BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009271
(538 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3PSG|A Chain A, The High Resolution Crystal Structure Of Porcine
Pepsinogen
Length = 370
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 84/362 (23%), Positives = 140/362 (38%), Gaps = 72/362 (19%)
Query: 110 HYTWIDIGTPNVSFLVALDAGSNLLWVPCQCIQCAPLSASYYTSLDRNLXXXXXXXXXXX 169
++ I IGTP F V D GS+ LWVP + C+ L+ S + + +
Sbjct: 58 YFGTIGIGTPAQDFTVIFDTGSSNLWVPS--VYCSSLACSDHNQFNPDDSSTFEATSQEL 115
Query: 170 XXXXXXHPXXXXXXXXXXXXDPCPYIADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQ 229
Y T S +G L D + + S
Sbjct: 116 SIT-------------------------YGTG--SMTGILGYDTVQVGGIS--------D 140
Query: 230 SSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVSVPSL------LAKAGLI-QNSFSICFD 282
++ I G + GS+L A DG++GL +S L GL+ Q+ FS+
Sbjct: 141 TNQIFGLSETEPGSFLYYAPFDGILGLAYPSISASGATPVFDNLWDQGLVSQDLFSVYLS 200
Query: 283 EN-DSGSVFF--GDQGPATQQSTSFLPIG-EKYDAYFVGVESYCI-GNSCLTQSGFQALV 337
N DSGSV G S +++P+ E Y + + ++S + G + G QA+V
Sbjct: 201 SNDDSGSVVLLGGIDSSYYTGSLNWVPVSVEGY--WQITLDSITMDGETIACSGGCQAIV 258
Query: 338 DSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMRLIFSK 397
D+G S PT A + S + + + + + SS + L PD+
Sbjct: 259 DTGTSLLTGPTSAIAN--------IQSDIGASENSDGEMVISCSSIDSL--PDIVFTIDG 308
Query: 398 NQ------SFVVRNHIFSFPENEGFTVFCLTVMSTDGDYGIIGQNFMMGHRIVFDRENLK 451
Q ++++++ EG + V ++ G+ I+G F+ + VFDR N K
Sbjct: 309 VQYPLSPSAYILQDDDSCTSGFEG-----MDVPTSSGELWILGDVFIRQYYTVFDRANNK 363
Query: 452 LA 453
+
Sbjct: 364 VG 365
>pdb|1FLH|A Chain A, Crystal Structure Of Human Uropepsin At 2.45 A Resolution
Length = 326
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 84/357 (23%), Positives = 137/357 (38%), Gaps = 62/357 (17%)
Query: 110 HYTWIDIGTPNVSFLVALDAGSNLLWVPCQCIQCAPLSASYYTSLDRNLXXXXXXXXXXX 169
++ I IGTP F V D GS+ LWVP + C+ L+ + + +
Sbjct: 14 YFGTIGIGTPAQDFTVVFDTGSSNLWVPS--VYCSSLACTNHNRFNPE------------ 59
Query: 170 XXXXXXHPXXXXXXXXXXXXDPCPYIADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQ 229
D Y ST +T S Y + + +
Sbjct: 60 --------------------DSSTY---QSTSETVSITYGTGSMTGILGYDTVQVGGISD 96
Query: 230 SSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVS------VPSLLAKAGLI-QNSFSICFD 282
++ I G + GS+L A DG++GL +S V + GL+ Q+ FS+
Sbjct: 97 TNQIFGLSETEPGSFLYYAPFDGILGLAYPSISSSGATPVFDNIWNQGLVSQDLFSVYLS 156
Query: 283 END-SGSV--FFGDQGPATQQSTSFLPIGEKYDAYF-VGVESYCI-GNSCLTQSGFQALV 337
+D SGSV F G S +++P+ + Y+ + V+S + G + G QA+V
Sbjct: 157 ADDQSGSVVIFGGIDSSYYTGSLNWVPV--TVEGYWQITVDSITMNGEAIACAEGCQAIV 214
Query: 338 DSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMRLIFSK 397
D+G S PT A + +S G+ C SS +PD+ +
Sbjct: 215 DTGTSLLTGPTSPIANIQSDIGASENSD-----GDMVVSCSAISS-----LPDIVFTING 264
Query: 398 NQSFVVRNHIFSFPENEGFTVF-CLTVMSTDGDYGIIGQNFMMGHRIVFDRENLKLA 453
Q V + E + F + V + G+ I+G F+ + VFDR N ++
Sbjct: 265 VQYPVPPSAYILQSEGSCISGFQGMNVPTESGELWILGDVFIRQYFTVFDRANNQVG 321
>pdb|1G0V|A Chain A, The Structure Of Proteinase A Complexed With A Ia3 Mutant,
Mvv
Length = 329
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 74/361 (20%), Positives = 142/361 (39%), Gaps = 76/361 (21%)
Query: 110 HYTWIDIGTPNVSFLVALDAGSNLLWVPCQCIQCAPLSASYYTSLDRNLXXXXXXXXXXX 169
+YT I +GTP +F V LD GS+ LWVP +C L+ ++ D
Sbjct: 15 YYTDITLGTPPQNFKVILDTGSSNLWVPSN--ECGSLACFLHSKYDHE------------ 60
Query: 170 XXXXXXHPXXXXXXXXXXXXDPCPYIADYSTEDTSSSGYLVDDILHLASFS---KHAPQS 226
+ + Y T S GY+ D L + + + ++
Sbjct: 61 -------------ASSSYKANGTEFAIQYGT--GSLEGYISQDTLSIGDLTIPKQDFAEA 105
Query: 227 SVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVSVPSL-------LAKAGLIQNSFSI 279
+ + + G+ DG++GLG +SV + + + L + F+
Sbjct: 106 TSEPGLTFAFGKF-----------DGILGLGYDTISVDKVVPPFYNAIQQDLLDEKRFAF 154
Query: 280 CFD------ENDSGSVFFGDQGPATQQSTSFLPIGEKYDAYF-VGVESYCIGNSCLTQSG 332
EN + F G + ++LP+ K AY+ V E +G+
Sbjct: 155 YLGDTSKDTENGGEATFGGIDESKFKGDITWLPVRRK--AYWEVKFEGIGLGDEYAELES 212
Query: 333 FQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMR 392
A +D+G S LP+ + ++++++ + +G++ +Y + ++ + L PD
Sbjct: 213 HGAAIDTGTSLITLPSGL--------AEMINAEIGAKKGSTGQYTLDCNTRDNL--PD-- 260
Query: 393 LIFSKNQ-SFVVRNHIFSFPENEGFTVFCLTVMSTD---GDYGIIGQNFMMGHRIVFDRE 448
LIF+ N +F + + ++ E G + +T M G I+G F+ + ++D
Sbjct: 261 LIFNFNGYNFTIGPYDYTL-EVSGSCISAITPMDFPEPVGPLAIVGDAFLRKYYSIYDLG 319
Query: 449 N 449
N
Sbjct: 320 N 320
>pdb|2PSG|A Chain A, Refined Structure Of Porcine Pepsinogen At 1.8 Angstroms
Resolution
Length = 370
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 85/362 (23%), Positives = 141/362 (38%), Gaps = 72/362 (19%)
Query: 110 HYTWIDIGTPNVSFLVALDAGSNLLWVPCQCIQCAPLSASYYTSLDRNLXXXXXXXXXXX 169
++ I IGTP F V D GS+ LWVP + C+ L+ S + + +
Sbjct: 58 YFGTIGIGTPAQDFTVIFDTGSSNLWVPS--VYCSSLACSDHNQFNPDDSSTFEATXQEL 115
Query: 170 XXXXXXHPXXXXXXXXXXXXDPCPYIADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQ 229
Y T S +G L D + + S
Sbjct: 116 SIT-------------------------YGT--GSMTGILGYDTVQVGGIS--------D 140
Query: 230 SSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVSVPSL------LAKAGLI-QNSFSICFD 282
++ I G + GS+L A DG++GL +S L GL+ Q+ FS+
Sbjct: 141 TNQIFGLSETEPGSFLYYAPFDGILGLAYPSISASGATPVFDNLWDQGLVSQDLFSVYLS 200
Query: 283 EN-DSGSVFF--GDQGPATQQSTSFLPIG-EKYDAYFVGVESYCI-GNSCLTQSGFQALV 337
N DSGSV G S +++P+ E Y + + ++S + G + G QA+V
Sbjct: 201 SNDDSGSVVLLGGIDSSYYTGSLNWVPVSVEGY--WQITLDSITMDGETIACSGGCQAIV 258
Query: 338 DSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMRLIFSK 397
D+G S PT A + S + + + + + SS + L PD+
Sbjct: 259 DTGTSLLTGPTSAIAN--------IQSDIGASENSDGEMVISCSSIDSL--PDIVFTIDG 308
Query: 398 NQ------SFVVRNHIFSFPENEGFTVFCLTVMSTDGDYGIIGQNFMMGHRIVFDRENLK 451
Q ++++++ EG + V ++ G+ I+G F+ + VFDR N K
Sbjct: 309 VQYPLSPSAYILQDDDSCTSGFEG-----MDVPTSSGELWILGDVFIRQYYTVFDRANNK 363
Query: 452 LA 453
+
Sbjct: 364 VG 365
>pdb|1PSA|A Chain A, Structure Of A Pepsin(Slash)renin Inhibitor Complex
Reveals A Novel Crystal Packing Induced By Minor
Chemical Alterations In The Inhibitor
pdb|1PSA|B Chain B, Structure Of A Pepsin(Slash)renin Inhibitor Complex
Reveals A Novel Crystal Packing Induced By Minor
Chemical Alterations In The Inhibitor
pdb|1YX9|A Chain A, Effect Of Dimethyl Sulphoxide On The Crystal Structure Of
Porcine Pepsin
Length = 326
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 84/362 (23%), Positives = 141/362 (38%), Gaps = 72/362 (19%)
Query: 110 HYTWIDIGTPNVSFLVALDAGSNLLWVPCQCIQCAPLSASYYTSLDRNLXXXXXXXXXXX 169
++ I IGTP F V D GS+ LWVP + C+ L+ S + + +
Sbjct: 14 YFGTIGIGTPAQDFTVIFDTGSSNLWVPS--VYCSSLACSDHNQFNPDDSSTFEATSQEL 71
Query: 170 XXXXXXHPXXXXXXXXXXXXDPCPYIADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQ 229
Y T S +G L D + + S
Sbjct: 72 SIT-------------------------YGTG--SMTGILGYDTVQVGGISD-------- 96
Query: 230 SSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVSVPSL------LAKAGLI-QNSFSICFD 282
++ I G + GS+L A DG++GL +S L GL+ Q+ FS+
Sbjct: 97 TNQIFGLSETEPGSFLYYAPFDGILGLAYPSISASGATPVFDNLWDQGLVSQDLFSVYLS 156
Query: 283 END-SGSVFF--GDQGPATQQSTSFLPIG-EKYDAYFVGVESYCI-GNSCLTQSGFQALV 337
ND SGSV G S +++P+ E Y + + ++S + G + G QA+V
Sbjct: 157 SNDDSGSVVLLGGIDSSYYTGSLNWVPVSVEGY--WQITLDSITMDGETIACSGGCQAIV 214
Query: 338 DSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMRLIFSK 397
D+G S PT A + S + + + + + SS + L PD+ +
Sbjct: 215 DTGTSLLTGPTSAIANI--------QSDIGASENSDGEMVISCSSIDSL--PDIVFTING 264
Query: 398 NQ------SFVVRNHIFSFPENEGFTVFCLTVMSTDGDYGIIGQNFMMGHRIVFDRENLK 451
Q ++++++ EG + V ++ G+ I+G F+ + VFDR N K
Sbjct: 265 VQYPLSPSAYILQDDDSCTSGFEG-----MDVPTSSGELWILGDVFIRQYYTVFDRANNK 319
Query: 452 LA 453
+
Sbjct: 320 VG 321
>pdb|5PEP|A Chain A, X-Ray Analyses Of Aspartic Proteases. Ii.
Three-Dimensional Structure Of The Hexagonal Crystal
Form Of Porcine Pepsin At 2.3 Angstroms Resolution
Length = 326
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 83/362 (22%), Positives = 141/362 (38%), Gaps = 72/362 (19%)
Query: 110 HYTWIDIGTPNVSFLVALDAGSNLLWVPCQCIQCAPLSASYYTSLDRNLXXXXXXXXXXX 169
++ I IGTP F V D GS+ LWVP + C+ L+ S + + +
Sbjct: 14 YFGTIGIGTPAQDFTVIFDTGSSNLWVPS--VYCSSLACSDHNQFNPDDSSTFEATSQEL 71
Query: 170 XXXXXXHPXXXXXXXXXXXXDPCPYIADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQ 229
Y T S +G L D + + S
Sbjct: 72 SIT-------------------------YGTG--SMTGILGYDTVQVGGISD-------- 96
Query: 230 SSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVSVPSL------LAKAGLI-QNSFSICFD 282
++ I G + GS+L A DG++GL +S L GL+ Q+ FS+
Sbjct: 97 TNQIFGLSETEPGSFLYYAPFDGILGLAYPSISASGATPVFDNLWDQGLVSQDLFSVYLS 156
Query: 283 EN-DSGSVFF--GDQGPATQQSTSFLPIG-EKYDAYFVGVESYCI-GNSCLTQSGFQALV 337
N DSGSV G S +++P+ E Y + + ++S + G + G QA+V
Sbjct: 157 SNDDSGSVVLLGGIDSSYYTGSLNWVPVSVEGY--WQITLDSITMDGETIACSGGCQAIV 214
Query: 338 DSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMRLIFSK 397
D+G S PT A + S + + + + + SS + +PD+ +
Sbjct: 215 DTGTSLLTGPTSAIAN--------IQSDIGASENSDGEMVISCSS--IASLPDIVFTING 264
Query: 398 NQ------SFVVRNHIFSFPENEGFTVFCLTVMSTDGDYGIIGQNFMMGHRIVFDRENLK 451
Q ++++++ EG + V ++ G+ I+G F+ + VFDR N K
Sbjct: 265 VQYPLSPSAYILQDDDSCTSGFEG-----MDVPTSSGELWILGDVFIRQYYTVFDRANNK 319
Query: 452 LA 453
+
Sbjct: 320 VG 321
>pdb|1F34|A Chain A, Crystal Structure Of Ascaris Pepsin Inhibitor-3 Bound To
Porcine Pepsin
Length = 326
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 85/362 (23%), Positives = 142/362 (39%), Gaps = 72/362 (19%)
Query: 110 HYTWIDIGTPNVSFLVALDAGSNLLWVPCQCIQCAPLSASYYTSLDRNLXXXXXXXXXXX 169
++ I IGTP F V D GS+ LWVP + C+ L+ S + + +
Sbjct: 14 YFGTIGIGTPAQDFTVIFDTGSSNLWVPS--VYCSSLACSDHNQFNPDDSSTFEATXQEL 71
Query: 170 XXXXXXHPXXXXXXXXXXXXDPCPYIADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQ 229
Y T S +G L D + + S
Sbjct: 72 SIT-------------------------YGTG--SMTGILGYDTVQVGGISD-------- 96
Query: 230 SSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVSVPSL------LAKAGLI-QNSFSICFD 282
++ I G + GS+L A DG++GL +S L GL+ Q+ FS+
Sbjct: 97 TNQIFGLSETEPGSFLYYAPFDGILGLAYPSISASGATPVFDNLWDQGLVSQDLFSVYLS 156
Query: 283 END-SGSVFF--GDQGPATQQSTSFLPIG-EKYDAYFVGVESYCI-GNSCLTQSGFQALV 337
ND SGSV G S +++P+ E Y + + ++S + G + G QA+V
Sbjct: 157 SNDDSGSVVLLGGIDSSYYTGSLNWVPVSVEGY--WQITLDSITMDGETIACSGGCQAIV 214
Query: 338 DSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMRLIFSK 397
D+G S PT A + S + + + + + SS + L PD+ +
Sbjct: 215 DTGTSLLTGPTSAIANI--------QSDIGASENSDGEMVISCSSIDSL--PDIVFTING 264
Query: 398 NQ------SFVVRNHIFSFPENEGFTVFCLTVMSTDGDYGIIGQNFMMGHRIVFDRENLK 451
Q ++++++ EG + V ++ G+ I+G F+ + VFDR N K
Sbjct: 265 VQYPLSPSAYILQDDDSCTSGFEG-----MDVPTSSGELWILGDVFIRQYYTVFDRANNK 319
Query: 452 LA 453
+
Sbjct: 320 VG 321
>pdb|1DP5|A Chain A, The Structure Of Proteinase A Complexed With A Ia3 Mutant
Inhibitor
pdb|1DPJ|A Chain A, The Structure Of Proteinase A Complexed With Ia3 Peptide
Inhibitor
pdb|1FMU|A Chain A, Structure Of Native Proteinase A In P3221 Space Group.
pdb|1FMX|A Chain A, Structure Of Native Proteinase A In The Space Group P21
pdb|1FMX|B Chain B, Structure Of Native Proteinase A In The Space Group P21
Length = 329
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 76/361 (21%), Positives = 136/361 (37%), Gaps = 76/361 (21%)
Query: 110 HYTWIDIGTPNVSFLVALDAGSNLLWVPCQCIQCAPLSASYYTSLDRNLXXXXXXXXXXX 169
+YT I +GTP +F V LD GS+ LWVP +C L+ ++ D
Sbjct: 15 YYTDITLGTPPQNFKVILDTGSSNLWVPSN--ECGSLACFLHSKYDHE------------ 60
Query: 170 XXXXXXHPXXXXXXXXXXXXDPCPYIADYSTEDTSSSGYLVDDILHLASFS---KHAPQS 226
+ + Y T S GY+ D L + + + ++
Sbjct: 61 -------------ASSSYKANGTEFAIQYGT--GSLEGYISQDTLSIGDLTIPKQDFAEA 105
Query: 227 SVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVSVPSL-------LAKAGLIQNSFSI 279
+ + + G+ DG++GLG +SV + + + L + F+
Sbjct: 106 TSEPGLTFAFGKF-----------DGILGLGYDTISVDKVVPPFYNAIQQDLLDEKRFAF 154
Query: 280 CFD------ENDSGSVFFGDQGPATQQSTSFLPIGEKYDAYF-VGVESYCIGNSCLTQSG 332
EN + F G + ++LP+ K AY+ V E +G+
Sbjct: 155 YLGDTSKDTENGGEATFGGIDESKFKGDITWLPVRRK--AYWEVKFEGIGLGDEYAELES 212
Query: 333 FQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMR 392
A +D+G S LP+ + AE++ + + +K+ W Y +PD
Sbjct: 213 HGAAIDTGTSLITLPSGL-AEMI---NAEIGAKK------GWTGQYTLDCNTRDNLPD-- 260
Query: 393 LIFSKN-QSFVVRNHIFSFPENEGFTVFCLTVMSTD---GDYGIIGQNFMMGHRIVFDRE 448
LIF+ N +F + + ++ E G + +T M G I+G F+ + ++D
Sbjct: 261 LIFNFNGYNFTIGPYDYTL-EVSGSCISAITPMDFPEPVGPLAIVGDAFLRKYYSIYDLG 319
Query: 449 N 449
N
Sbjct: 320 N 320
>pdb|3PEP|A Chain A, Revised 2.3 Angstroms Structure Of Porcine Pepsin.
Evidence For A Flexible Subdomain
Length = 326
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 84/362 (23%), Positives = 140/362 (38%), Gaps = 72/362 (19%)
Query: 110 HYTWIDIGTPNVSFLVALDAGSNLLWVPCQCIQCAPLSASYYTSLDRNLXXXXXXXXXXX 169
++ I IGTP F V D GS+ LWVP + C+ L+ S + + +
Sbjct: 14 YFGTIGIGTPAQDFTVIFDTGSSNLWVPS--VYCSSLACSDHNQFNPDDSSTFEATSQEL 71
Query: 170 XXXXXXHPXXXXXXXXXXXXDPCPYIADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQ 229
Y T S +G L D + + S
Sbjct: 72 SIT-------------------------YGTG--SMTGILGYDTVQVGGISD-------- 96
Query: 230 SSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVSVPSL------LAKAGLI-QNSFSICFD 282
++ I G + GS+L A DG++GL +S L GL+ Q+ FS+
Sbjct: 97 TNQIFGLSETEPGSFLYYAPFDGILGLAYPSISASGATPVFDNLWDQGLVSQDLFSVYLS 156
Query: 283 EN-DSGSVFF--GDQGPATQQSTSFLPIG-EKYDAYFVGVESYCI-GNSCLTQSGFQALV 337
N DSGSV G S +++P+ E Y + + ++S + G + G QA+V
Sbjct: 157 SNDDSGSVVLLGGIDSSYYTGSLNWVPVSVEGY--WQITLDSITMDGETIACSGGCQAIV 214
Query: 338 DSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMRLIFSK 397
D+G S PT A + S + + + + + SS + L PD+
Sbjct: 215 DTGTSLLTGPTSAIAN--------IQSDIGASENSDGEMVISCSSIDSL--PDIVFTIDG 264
Query: 398 NQ------SFVVRNHIFSFPENEGFTVFCLTVMSTDGDYGIIGQNFMMGHRIVFDRENLK 451
Q ++++++ EG + V ++ G+ I+G F+ + VFDR N K
Sbjct: 265 VQYPLSPSAYILQDDDSCTSGFEG-----MDVPTSSGELWILGDVFIRQYYTVFDRANNK 319
Query: 452 LA 453
+
Sbjct: 320 VG 321
>pdb|1PSO|E Chain E, The Crystal Structure Of Human Pepsin And Its Complex With
Pepstatin
pdb|1QRP|E Chain E, Human Pepsin 3a In Complex With A Phosphonate Inhibitor
Iva-Val-Val- Leu(P)-(O)phe-Ala-Ala-Ome
pdb|1PSN|A Chain A, The Crystal Structure Of Human Pepsin And Its Complex With
Pepstatin
pdb|3UTL|A Chain A, Human Pepsin 3b
Length = 326
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 83/357 (23%), Positives = 137/357 (38%), Gaps = 62/357 (17%)
Query: 110 HYTWIDIGTPNVSFLVALDAGSNLLWVPCQCIQCAPLSASYYTSLDRNLXXXXXXXXXXX 169
++ I IGTP F V D GS+ LWVP + C+ L+ + + +
Sbjct: 14 YFGTIGIGTPAQDFTVVFDTGSSNLWVPS--VYCSSLACTNHNRFNPE------------ 59
Query: 170 XXXXXXHPXXXXXXXXXXXXDPCPYIADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQ 229
D Y ST +T S Y + + +
Sbjct: 60 --------------------DSSTY---QSTSETVSITYGTGSMTGILGYDTVQVGGISD 96
Query: 230 SSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVS------VPSLLAKAGLI-QNSFSICFD 282
++ I G + GS+L A DG++GL +S V + GL+ Q+ FS+
Sbjct: 97 TNQIFGLSETEPGSFLYYAPFDGILGLAYPSISSSGATPVFDNIWNQGLVSQDLFSVYLS 156
Query: 283 END-SGSV--FFGDQGPATQQSTSFLPIGEKYDAYF-VGVESYCI-GNSCLTQSGFQALV 337
+D SGSV F G S +++P+ + Y+ + V+S + G + G QA+V
Sbjct: 157 ADDQSGSVVIFGGIDSSYYTGSLNWVPV--TVEGYWQITVDSITMNGEAIACAEGCQAIV 214
Query: 338 DSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMRLIFSK 397
D+G S PT A + +S G+ C SS +PD+ +
Sbjct: 215 DTGTSLLTGPTSPIANIQSDIGASENSD-----GDMVVSCSAISS-----LPDIVFTING 264
Query: 398 NQSFVVRNHIFSFPENEGFTVF-CLTVMSTDGDYGIIGQNFMMGHRIVFDRENLKLA 453
Q V + E + F + + + G+ I+G F+ + VFDR N ++
Sbjct: 265 VQYPVPPSAYILQSEGSCISGFQGMNLPTESGELWILGDVFIRQYFTVFDRANNQVG 321
>pdb|4PEP|A Chain A, The Molecular And Crystal Structures Of Monoclinic Porcine
Pepsin Refined At 1.8 Angstroms Resolution
Length = 326
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 85/362 (23%), Positives = 141/362 (38%), Gaps = 72/362 (19%)
Query: 110 HYTWIDIGTPNVSFLVALDAGSNLLWVPCQCIQCAPLSASYYTSLDRNLXXXXXXXXXXX 169
++ I IGTP F V D GS+ LWVP + C+ L+ S + + +
Sbjct: 14 YFGTIGIGTPAQDFTVIFDTGSSNLWVPS--VYCSSLACSDHNQFNPDDSSTFEATXQEL 71
Query: 170 XXXXXXHPXXXXXXXXXXXXDPCPYIADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQ 229
Y T S +G L D + + S
Sbjct: 72 SIT-------------------------YGTG--SMTGILGYDTVQVGGISD-------- 96
Query: 230 SSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVSVPSL------LAKAGLI-QNSFSICFD 282
++ I G + GS+L A DG++GL +S L GL+ Q+ FS+
Sbjct: 97 TNQIFGLSETEPGSFLYYAPFDGILGLAYPSISASGATPVFDNLWDQGLVSQDLFSVYLS 156
Query: 283 EN-DSGSVFF--GDQGPATQQSTSFLPIG-EKYDAYFVGVESYCI-GNSCLTQSGFQALV 337
N DSGSV G S +++P+ E Y + + ++S + G + G QA+V
Sbjct: 157 SNDDSGSVVLLGGIDSSYYTGSLNWVPVSVEGY--WQITLDSITMDGETIACSGGCQAIV 214
Query: 338 DSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMRLIFSK 397
D+G S PT A + S + + + + + SS + L PD+
Sbjct: 215 DTGTSLLTGPTSAIAN--------IQSDIGASENSDGEMVISCSSIDSL--PDIVFTIDG 264
Query: 398 NQ------SFVVRNHIFSFPENEGFTVFCLTVMSTDGDYGIIGQNFMMGHRIVFDRENLK 451
Q ++++++ EG + V ++ G+ I+G F+ + VFDR N K
Sbjct: 265 VQYPLSPSAYILQDDDSCTSGFEG-----MDVPTSSGELWILGDVFIRQYYTVFDRANNK 319
Query: 452 LA 453
+
Sbjct: 320 VG 321
>pdb|2JXR|A Chain A, Structure Of Yeast Proteinase A
pdb|1FQ4|A Chain A, Crystal Structure Of A Complex Between Hydroxyethylene
Inhibitor Cp- 108,420 And Yeast Aspartic Proteinase A
pdb|1FQ5|A Chain A, X-Ray Struture Of A Cyclic Statine Inhibitor Pd-129,541
Bound To Yeast Proteinase A
pdb|1FQ6|A Chain A, X-Ray Structure Of Glycol Inhibitor Pd-133,450 Bound To
Saccharopepsin
pdb|1FQ7|A Chain A, X-Ray Structure Of Inhibitor Cp-72,647 Bound To
Saccharopepsin
pdb|1FQ8|A Chain A, X-Ray Structure Of Difluorostatine Inhibitor Cp81,198
Bound To Saccharopepsin
Length = 329
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 76/361 (21%), Positives = 136/361 (37%), Gaps = 76/361 (21%)
Query: 110 HYTWIDIGTPNVSFLVALDAGSNLLWVPCQCIQCAPLSASYYTSLDRNLXXXXXXXXXXX 169
+YT I +GTP +F V LD GS+ LWVP +C L+ ++ D
Sbjct: 15 YYTDITLGTPPQNFKVILDTGSSNLWVPSN--ECGSLACFLHSKYDHE------------ 60
Query: 170 XXXXXXHPXXXXXXXXXXXXDPCPYIADYSTEDTSSSGYLVDDILHLASFS---KHAPQS 226
+ + Y T S GY+ D L + + + ++
Sbjct: 61 -------------ASSSYKANGTEFAIQYGT--GSLEGYISQDTLSIGDLTIPKQDFAEA 105
Query: 227 SVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVSVPSL-------LAKAGLIQNSFSI 279
+ + + G+ DG++GLG +SV + + + L + F+
Sbjct: 106 TSEPGLTFAFGKF-----------DGILGLGYDTISVDKVVPPFYNAIQQDLLDEKRFAF 154
Query: 280 CFD------ENDSGSVFFGDQGPATQQSTSFLPIGEKYDAYF-VGVESYCIGNSCLTQSG 332
EN + F G + ++LP+ K AY+ V E +G+
Sbjct: 155 YLGDTSKDTENGGEATFGGIDESKFKGDITWLPVRRK--AYWEVKFEGIGLGDEYAELES 212
Query: 333 FQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMR 392
A +D+G S LP+ + AE++ + + +K+ W Y +PD
Sbjct: 213 HGAAIDTGTSLITLPSGL-AEMI---NAEIGAKK------GWTGQYTLDCNTRDNLPD-- 260
Query: 393 LIFSKN-QSFVVRNHIFSFPENEGFTVFCLTVMSTD---GDYGIIGQNFMMGHRIVFDRE 448
LIF+ N +F + + ++ E G + +T M G I+G F+ + ++D
Sbjct: 261 LIFNFNGYNFTIGPYDYTL-EVSGSCISAITPMDFPEPVGPLAIVGDAFLRKYYSIYDIG 319
Query: 449 N 449
N
Sbjct: 320 N 320
>pdb|1SMR|A Chain A, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|C Chain C, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|E Chain E, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|G Chain G, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
Length = 335
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 44/228 (19%), Positives = 93/228 (40%), Gaps = 34/228 (14%)
Query: 251 DGVMGLGLGDVSVPS-------LLAKAGLIQNSFSICFDEND---SGSVFFGDQGPATQQ 300
DGV+G+G +V +L++ L + FS+ ++ G V G P Q
Sbjct: 122 DGVLGMGFPAQAVGGVTPVFDHILSQGVLKEKVFSVYYNRGPHLLGGEVVLGGSDPQHYQ 181
Query: 301 STSFLPIGEKYDAYFVGVESYCIGNSCLT-QSGFQALVDSGASFTFLPTEIYAEVVVKFD 359
K D++ + ++ +G+S L + G + +VD+G+SF PT
Sbjct: 182 GDFHYVSLSKTDSWQITMKGVSVGSSTLLCEEGCEVVVDTGSSFISAPT----------- 230
Query: 360 KLVSSKRISLQGNSWK----YCYNASSEEMLKVPDMRL-IFSKNQSFVVRNHIFSFPENE 414
SS ++ +Q K + Y S ++ +PD+ + + + +++ +P
Sbjct: 231 ---SSLKLIMQALGAKEKRLHEYVVSCSQVPTLPDISFNLGGRAYTLSSTDYVLQYPNRR 287
Query: 415 ----GFTVFCLTVMSTDGDYGIIGQNFMMGHRIVFDRENLKLAWSHSK 458
+ + + G ++G F+ FDR N ++ ++ ++
Sbjct: 288 DKLCTVALHAMDIPPPTGPVWVLGATFIRKFYTEFDRHNNRIGFALAR 335
Score = 32.0 bits (71), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 17/28 (60%)
Query: 110 HYTWIDIGTPNVSFLVALDAGSNLLWVP 137
+Y I IGTP +F V D GS LWVP
Sbjct: 17 YYGEIGIGTPPQTFKVIFDTGSANLWVP 44
>pdb|3HD8|A Chain A, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-Iia In Complex With Bacillus Subtilis Xylanase
pdb|3HD8|C Chain C, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-Iia In Complex With Bacillus Subtilis Xylanase
Length = 389
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 41/186 (22%), Positives = 72/186 (38%), Gaps = 13/186 (6%)
Query: 191 PCPYIADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIGCGRKQTGSYLDGAAP 250
PC ++G L + + P S V V+ C + + L +
Sbjct: 81 PCTAYPSNPVTGACAAGSLFHTRFAANTTDGNKPVSEVNVRVLAACAPSKLLASLPRGS- 139
Query: 251 DGVMGLGLGDVSVPSLLAKAGLIQNSFSICFDENDSGSVFFGDQG---PATQQSTSFLPI 307
GV GL +++PS +A A + N F +C G FG P QS + P+
Sbjct: 140 TGVAGLAGSGLALPSQVASAQKVPNKFLLCLPTGGPGVAIFGGGPLPWPQFTQSMDYTPL 199
Query: 308 GEK--YDAYFVGVESYCIGNSCLTQSGFQALVDSGA------SFTFLPTEIYAEVVVKFD 359
K A+++ S + N+ + S +AL G + L ++Y +V F
Sbjct: 200 VAKGGSPAHYISARSIKVENTRVPIS-ERALATGGVMLSTRLPYVLLRRDVYRPLVDAFT 258
Query: 360 KLVSSK 365
K ++++
Sbjct: 259 KALAAQ 264
>pdb|1EAG|A Chain A, Secreted Aspartic Proteinase (Sap2) From Candida Albicans
Complexed With A70450
pdb|3PVK|A Chain A, Secreted Aspartic Protease 2 In Complex With Benzamidine
pdb|3Q70|A Chain A, Secreted Aspartic Protease In Complex With Ritonavir
Length = 342
Score = 37.0 bits (84), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 90/204 (44%), Gaps = 18/204 (8%)
Query: 262 SVPSLLAKAGLI-QNSFSICFDEND--SGSVFFGDQGPATQQSTSFLPIGEKYDAYF-VG 317
+VP L K G+I +N++S+ + D +G + FG A + S S + + D +
Sbjct: 139 NVPVTLKKQGVIAKNAYSLYLNSPDAATGQIIFGGVDNA-KYSGSLIALPVTSDRELRIS 197
Query: 318 VESYCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQGNS-WKY 376
+ S + + L+DSG + T+L ++ +++ F+ ++ GNS ++
Sbjct: 198 LGSVEVSGKTINTDNVDVLLDSGTTITYLQQDLADQIIKAFNGKLTQDS---NGNSFYEV 254
Query: 377 CYNASSEEMLKVPDMRLIFSKNQSFVVRNHIF--SFPENEGFTVFCLTVMSTDGDYGIIG 434
N S D+ FSKN V F S ++G ++ D I+G
Sbjct: 255 DCNLSG-------DVVFNFSKNAKISVPASEFAASLQGDDGQPYDKCQLLFDVNDANILG 307
Query: 435 QNFMMGHRIVFDRENLKLAWSHSK 458
NF+ IV+D ++ +++ + K
Sbjct: 308 DNFLRSAYIVYDLDDNEISLAQVK 331
>pdb|1B5F|A Chain A, Native Cardosin A From Cynara Cardunculus L.
pdb|1B5F|C Chain C, Native Cardosin A From Cynara Cardunculus L
Length = 239
Score = 37.0 bits (84), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 11/114 (9%)
Query: 251 DGVMGLGLGDVSVP---SLLAKAGLIQNSFSICF----DENDSGSVFFGDQGPAT-QQST 302
DG++GL +SVP ++L + + + FS DE + G + FG P +
Sbjct: 120 DGILGLSFQTISVPVWYNMLNQGLVKERRFSFWLNRNVDEEEGGELVFGGLDPNHFRGDH 179
Query: 303 SFLPIGEKYDAYFVGVESYCIGN--SCLTQSGFQALVDSGASFTFLPTEIYAEV 354
+++P+ +Y F G+ IG+ + G QA DSG S PT I ++
Sbjct: 180 TYVPVTYQYYWQF-GIGDVLIGDKSTGFCAPGCQAFADSGTSLLSGPTAIVTQI 232
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 110 HYTWIDIGTPNVSFLVALDAGSNLLWVP-CQCIQCAPLSA-SYYTSLD 155
++ I IGTP F V D GS++LWVP +CI A S Y S D
Sbjct: 15 YFGEIGIGTPPQKFTVIFDTGSSVLWVPSSKCINSKACRAHSMYESSD 62
>pdb|1AM5|A Chain A, The Crystal Structure And Proposed Amino Acid Sequence Of
A Pepsin From Atlantic Cod (Gadus Morhua)
Length = 324
Score = 35.4 bits (80), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 77/377 (20%), Positives = 127/377 (33%), Gaps = 100/377 (26%)
Query: 110 HYTWIDIGTPNVSFLVALDAGSNLLWVP---CQCIQCA------PLSASYYTSLDRNLXX 160
+Y I IGTP SF V D GS+ LWV C C+ P +S Y + +
Sbjct: 14 YYGVISIGTPPESFKVIFDTGSSNLWVSSSHCSAQACSNHNKFKPRQSSTYVETGKTV-- 71
Query: 161 XXXXXXXXXXXXXXXHPXXXXXXXXXXXXDPCPYIADYSTEDTSSSGYLVDDILHLASFS 220
D + G L D + + S
Sbjct: 72 ------------------------------------DLTYGTGGMRGILGQDTVSVGGGS 95
Query: 221 KHAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVSVPSLLAKAGL--IQNSFS 278
+ +G + + G + A DG++GL + PS+ A + N S
Sbjct: 96 DPNQE--------LGESQTEPGPFQAAAPFDGILGL-----AYPSIAAAGAVPVFDNMGS 142
Query: 279 ICFDENDSGSVFFGDQGPATQQ-------------STSFLPI-GEKYDAYFVGVESYCIG 324
E D S + G + S ++P+ EKY + V ++ +
Sbjct: 143 QSLVEKDLFSFYLSGGGANGSEVMLGGVDNSHYTGSIHWIPVTAEKY--WQVALDGITVN 200
Query: 325 NSCLTQSGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYCYNASSEE 384
G QA+VD+G S P A ++ K I N + N +S +
Sbjct: 201 GQTAACEGCQAIVDTGTSKIVAPVSALANIM---------KDIGASENQGEMMGNCASVQ 251
Query: 385 MLKVPDMRLIFSKNQSFVVRNHIFSFPENEGFTVFCLTVMSTDG------DYGIIGQNFM 438
L PD+ + V+ + EG FC + + + G + I G F+
Sbjct: 252 SL--PDITFTING-----VKQPLPPSAYIEGDQAFCTSGLGSSGVPSNTSELWIFGDVFL 304
Query: 439 MGHRIVFDRENLKLAWS 455
+ ++DR N K+ ++
Sbjct: 305 RNYYTIYDRTNNKVGFA 321
>pdb|1HTR|B Chain B, Crystal And Molecular Structures Of Human Progastricsin At
1.62 Angstroms Resolution
pdb|1AVF|A Chain A, Activation Intermediate 2 Of Human Gastricsin From Human
Stomach
pdb|1AVF|J Chain J, Activation Intermediate 2 Of Human Gastricsin From Human
Stomach
Length = 329
Score = 35.4 bits (80), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Query: 110 HYTWIDIGTPNVSFLVALDAGSNLLWVP---CQCIQC 143
++ I IGTP +FLV D GS+ LWVP CQ C
Sbjct: 14 YFGEISIGTPPQNFLVLFDTGSSNLWVPSVYCQSQAC 50
>pdb|4AA9|A Chain A, Camel Chymosin At 1.6a Resolution
Length = 320
Score = 35.4 bits (80), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 61/264 (23%), Positives = 102/264 (38%), Gaps = 78/264 (29%)
Query: 110 HYTWIDIGTPNVSFLVALDAGSNLLWVP---CQCIQCA------PLSASYYTSLDRNLXX 160
++ I IGTP F V D GS+ LWVP C+ C P +S + +L +
Sbjct: 13 YFGKIYIGTPPQEFTVVFDTGSSDLWVPSIYCKSNVCKNHHRFDPRKSSTFRNLGK---- 68
Query: 161 XXXXXXXXXXXXXXXHPXXXXXXXXXXXXDPCPYIADYSTEDTSSSGYLVDDILHLASFS 220
P Y T S G+L D + +++
Sbjct: 69 --------------------------------PLSIHYGT--GSMEGFLGYDTVTVSNI- 93
Query: 221 KHAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGL----GDVSVP---SLLAKAGLI 273
V + +G +Q G + DG++GL + SVP +++ + +
Sbjct: 94 -------VDPNQTVGLSTEQPGEVFTYSEFDGILGLAYPSLASEYSVPVFDNMMDRHLVA 146
Query: 274 QNSFSICFDENDSGSVF-FGDQGPATQQ-STSFLPIG-EKYDAYFV------GVESYCIG 324
++ FS+ D N GS+ G P+ S ++P+ ++Y + V GV C+G
Sbjct: 147 RDLFSVYMDRNGQGSMLTLGAIDPSYYTGSLHWVPVTLQQYWQFTVDSVTINGVAVACVG 206
Query: 325 NSCLTQSGFQALVDSGASFTFLPT 348
G QA++D+G S F P+
Sbjct: 207 -------GCQAILDTGTSVLFGPS 223
>pdb|1T6E|X Chain X, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor I
pdb|1T6G|A Chain A, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-i In Complex With Aspergillus Niger Xylanase-i
pdb|1T6G|B Chain B, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-i In Complex With Aspergillus Niger Xylanase-i
Length = 381
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 33/154 (21%), Positives = 64/154 (41%), Gaps = 15/154 (9%)
Query: 224 PQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVSVPSLLAKAGLIQNSFSICFDE 283
P S V V+ C + + L + GV GL +++P+ +A A + N F +C
Sbjct: 112 PVSKVNVGVLAACAPSKLLASLPRGS-TGVAGLANSGLALPAQVASAQKVANRFLLCLPT 170
Query: 284 NDSGSVFFGDQG---PATQQSTSFLPIGEK--YDAYFVGVESYCIGNS-------CLTQS 331
G FG P QS + P+ K A+++ S +G++ L
Sbjct: 171 GGPGVAIFGGGPVPWPQFTQSMPYTPLVTKGGSPAHYISARSIVVGDTRVPVPEGALATG 230
Query: 332 GFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSK 365
G ++ + + L ++Y ++ F K ++++
Sbjct: 231 GV--MLSTRLPYVLLRPDVYRPLMDAFTKALAAQ 262
>pdb|2B42|A Chain A, Crystal Structure Of The Triticum Xylanse Inhibitor-I In
Complex With Bacillus Subtilis Xylanase
Length = 381
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 33/155 (21%), Positives = 64/155 (41%), Gaps = 15/155 (9%)
Query: 224 PQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVSVPSLLAKAGLIQNSFSICFDE 283
P S V V+ C + + L + GV GL +++P+ +A A + N F +C
Sbjct: 112 PVSKVNVGVLAACAPSKLLASLPRGS-TGVAGLANSGLALPAQVASAQKVANRFLLCLPT 170
Query: 284 NDSGSVFFGDQG---PATQQSTSFLPIGEK--YDAYFVGVESYCIGNS-------CLTQS 331
G FG P QS + P+ K A+++ S +G++ L
Sbjct: 171 GGPGVAIFGGGPVPWPQFTQSMPYTPLVTKGGSPAHYISARSIVVGDTRVPVPEGALATG 230
Query: 332 GFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKR 366
G ++ + + L ++Y ++ F K ++++
Sbjct: 231 GV--MLSTRLPYVLLRPDVYRPLMDAFTKALAAQH 263
>pdb|1UH7|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 4.6
pdb|1UH8|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 8.0
pdb|1UH9|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 7.0
Length = 325
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 80/366 (21%), Positives = 125/366 (34%), Gaps = 97/366 (26%)
Query: 110 HYTWIDIGTPNVSFLVALDAGSNLLWVPCQ-CIQCAPLSASYYTSLDRNLXXXXXXXXXX 168
+Y + IGTP F + D GS+ LW+ C C S T D N
Sbjct: 17 YYGQVTIGTPGKKFNLDFDTGSSDLWIASTLCTNCG----SRQTKYDPN----------- 61
Query: 169 XXXXXXXHPXXXXXXXXXXXXDPCPYIADYST------EDTSSSGYLVDDILHLASFSKH 222
Y AD T + +S+SG L D ++L
Sbjct: 62 ---------------------QSSTYQADGRTWSISYGDGSSASGILAKDNVNLGGL--- 97
Query: 223 APQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGL-------------------GDVSV 263
+ I +++ S+ G DG++GLG G +S
Sbjct: 98 -----LIKGQTIELAKREAASFASGPN-DGLLGLGFDTITTVRGVKTPMDNLISQGLISR 151
Query: 264 PSLLAKAGLIQNSFSICFDENDSGSVFFGDQGPATQQSTSFLPIGEKYDAYFVGVESYCI 323
P G +N + S F + S + +PI + + V+ +
Sbjct: 152 PIFGVYLGKAKNGGGGEYIFGGYDSTKF-------KGSLTTVPIDNSRGWWGITVDRATV 204
Query: 324 GNSCLTQSGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYCYNASSE 383
G S + S F ++D+G + LP I A V + S G+ Y S +
Sbjct: 205 GTSTVASS-FDGILDTGTTLLILPNNIAASVARAYGA-------SDNGDG---TYTISCD 253
Query: 384 EMLKVPDMRLIFSKN-QSFVVRNHIFSFPENEGFTVFCLTVMS-TDGDYGIIGQNFMMGH 441
P L+FS N SF V F E +G C+ + D+ IIG F+ +
Sbjct: 254 TSRFKP---LVFSINGASFQVSPDSLVFEEFQG---QCIAGFGYGNWDFAIIGDTFLKNN 307
Query: 442 RIVFDR 447
+VF++
Sbjct: 308 YVVFNQ 313
>pdb|3VCM|A Chain A, Crystal Structure Of Human Prorenin
pdb|3VCM|B Chain B, Crystal Structure Of Human Prorenin
Length = 335
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 74/364 (20%), Positives = 140/364 (38%), Gaps = 63/364 (17%)
Query: 110 HYTWIDIGTPNVSFLVALDAGSNLLWVPCQCIQCAPLSASYYTSLDRNLXXXXXXXXXXX 169
+Y I IGTP +F V D GS+ +WVP +C+ L YT+
Sbjct: 20 YYGEIGIGTPPQTFKVVFDTGSSNVWVPSS--KCSRL----YTAC--------------- 58
Query: 170 XXXXXXHPXXXXXXXXXXXXDPCPYIADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQ 229
H + YST + SG+L DI+ + +
Sbjct: 59 ----VYHKLFDASDSSSYKHNGTELTLRYSTG--TVSGFLSQDIITVG---------GIT 103
Query: 230 SSVIIGCGRKQTGSYLDGAAPDGVMGLG-----LGDVS--VPSLLAKAGLIQNSFSICFD 282
+ + G + A DGV+G+G +G V+ +++++ L ++ FS ++
Sbjct: 104 VTQMFGEVTEMPALPFMLAEFDGVVGMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYN 163
Query: 283 END-SGSVFFGDQGPATQQSTSFLPIGEKYDAYFVGVESYCIGNSCLT-QSGFQALVDSG 340
+ G + G P + K + + ++ +G+S L + G ALVD+G
Sbjct: 164 RDSLGGQIVLGGSDPQHYEGNFHYINLIKTGVWQIQMKGVSVGSSTLLCEDGCLALVDTG 223
Query: 341 ASFTFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMRLIFSKNQS 400
AS+ T +++ + L + KR+ + Y E +PD+ +
Sbjct: 224 ASYISGSTSSIEKLM---EALGAKKRL--------FDYVVKCNEGPTLPDISFHLG-GKE 271
Query: 401 FVVRNHIFSFPENEGFTVFC-LTVMSTD-----GDYGIIGQNFMMGHRIVFDRENLKLAW 454
+ + + + F E+ C L + + D G +G F+ FDR N ++ +
Sbjct: 272 YTLTSADYVFQESYSSKKLCTLAIHAMDIPPPTGPTWALGATFIRKFYTEFDRRNNRIGF 331
Query: 455 SHSK 458
+ ++
Sbjct: 332 ALAR 335
>pdb|1ZAP|A Chain A, Secreted Aspartic Protease From C. Albicans
Length = 342
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 50/218 (22%), Positives = 89/218 (40%), Gaps = 46/218 (21%)
Query: 262 SVPSLLAKAGLI-QNSFSICFDENDS--GSVFFGDQGPATQQSTSFLPIGEKYDAYF-VG 317
+VP L K G+I +N++S+ + DS G + FG A + S S + + D +
Sbjct: 139 NVPVTLKKQGVIAKNAYSLYLNSPDSATGQIIFGGVDNA-KYSGSLIALPVTSDRELRIS 197
Query: 318 VESYCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQGNS-WKY 376
+ S + + L+DSG + T+L ++ +++ F+ ++ GNS ++
Sbjct: 198 LGSVEVSGKTINTDNVDVLLDSGTTITYLQQDLADQIIKAFNGKLTQDS---NGNSFYEV 254
Query: 377 CYNASSEEMLKVPDMRLIFSKNQSFVVRNHIFSFPENEGFTVFCLTVMSTDGDYG----- 431
N S D+ FSKN V F+ ST GD G
Sbjct: 255 DCNLSG-------DVVFNFSKNAKISVPASDFA--------------ASTQGDDGQPYDK 293
Query: 432 -----------IIGQNFMMGHRIVFDRENLKLAWSHSK 458
I+G NF+ IV+D ++ +++ + K
Sbjct: 294 CQLLFDVNKANILGDNFLRSAYIVYDLDDNEISIAQVK 331
>pdb|1SME|A Chain A, Plasmepsin Ii, A Hemoglobin-Degrading Enzyme From
Plasmodium Falciparum, In Complex With Pepstatin A
pdb|1SME|B Chain B, Plasmepsin Ii, A Hemoglobin-Degrading Enzyme From
Plasmodium Falciparum, In Complex With Pepstatin A
pdb|1ME6|A Chain A, Crystal Structure Of Plasmepsin Ii, An Aspartyl Protease
From Plasmodium Falciparum, In Complex With A
Statine-Based Inhibitor
pdb|1ME6|B Chain B, Crystal Structure Of Plasmepsin Ii, An Aspartyl Protease
From Plasmodium Falciparum, In Complex With A
Statine-Based Inhibitor
pdb|1XE5|A Chain A, Structure Of Plasmepsin Ii In Complex Of An Pepstatin
Analogue
pdb|1XE5|B Chain B, Structure Of Plasmepsin Ii In Complex Of An Pepstatin
Analogue
pdb|1XE6|A Chain A, Structure Of Plasmepsin Ii In Complex Of An Pepstatin
Analogue
pdb|1XE6|B Chain B, Structure Of Plasmepsin Ii In Complex Of An Pepstatin
Analogue
pdb|2IGX|A Chain A, Achiral, Cheap And Potent Inhibitors Of Plasmepsins Ii
pdb|2IGY|A Chain A, Achiral, Cheap And Potent Inhibitors Of Plasmepsins Ii
pdb|2IGY|B Chain B, Achiral, Cheap And Potent Inhibitors Of Plasmepsins Ii
pdb|2R9B|A Chain A, Structural Analysis Of Plasmepsin 2 From Plasmodium
Falciparum Complexed With A Peptide-Based Inhibitor
pdb|2R9B|B Chain B, Structural Analysis Of Plasmepsin 2 From Plasmodium
Falciparum Complexed With A Peptide-Based Inhibitor
Length = 329
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 47/225 (20%), Positives = 88/225 (39%), Gaps = 36/225 (16%)
Query: 251 DGVMGLGLGDVSVPSLLAKAGLIQNSFSICFDENDSGSVFFGDQGPATQQSTSFLPIGEK 310
DG++GLG D+S+ S+ ++N +N + F P + T FL IG
Sbjct: 121 DGILGLGWKDLSIGSVDPIVVELKN-------QNKIENALFTFYLPVHDKHTGFLTIGGI 173
Query: 311 YDAYFVGVESY---------------CIGNSCLTQSGFQALVDSGASFTFLPTEIYAEVV 355
+ ++ G +Y +GN L ++ +VDSG S +PT+ +++
Sbjct: 174 EERFYEGPLTYEKLNHDLYWQITLDAHVGNIMLEKA--NCIVDSGTSAITVPTDFLNKML 231
Query: 356 VKFDKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMRLIFSKNQSFVVRNHIFSFPENEG 415
D + ++ C N+ K+P + + + E+ G
Sbjct: 232 QNLDVI----KVPFLPFYVTLCNNS------KLPTFEFTSENGKYTLEPEYYLQHIEDVG 281
Query: 416 FTVFCLTVMSTDGDYG--IIGQNFMMGHRIVFDRENLKLAWSHSK 458
+ L ++ D I+G FM + VFD +N + + +K
Sbjct: 282 PGLCMLNIIGLDFPVPTFILGDPFMRKYFTVFDYDNHSVGIALAK 326
>pdb|3F9Q|A Chain A, Re-Refinement Of Uncomplexed Plasmepsin Ii From Plasmodium
Falciparum
Length = 329
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 47/225 (20%), Positives = 88/225 (39%), Gaps = 36/225 (16%)
Query: 251 DGVMGLGLGDVSVPSLLAKAGLIQNSFSICFDENDSGSVFFGDQGPATQQSTSFLPIGEK 310
DG++GLG D+S+ S+ ++N +N + F P + T FL IG
Sbjct: 121 DGILGLGWKDLSIGSVDPIVVELKN-------QNKIENALFTFYLPVHDKHTGFLTIGGI 173
Query: 311 YDAYFVGVESY---------------CIGNSCLTQSGFQALVDSGASFTFLPTEIYAEVV 355
+ ++ G +Y +GN L ++ +VDSG S +PT+ +++
Sbjct: 174 EERFYEGPLTYEKLNHDLYWQITLDAHVGNISLEKA--NCIVDSGTSAITVPTDFLNKML 231
Query: 356 VKFDKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMRLIFSKNQSFVVRNHIFSFPENEG 415
D + ++ C N+ K+P + + + E+ G
Sbjct: 232 QNLDVI----KVPFLPFYVTLCNNS------KLPTFEFTSENGKYTLEPEYYLQHIEDVG 281
Query: 416 FTVFCLTVMSTDGDYG--IIGQNFMMGHRIVFDRENLKLAWSHSK 458
+ L ++ D I+G FM + VFD +N + + +K
Sbjct: 282 PGLCMLNIIGLDFPVPTFILGDPFMRKYFTVFDYDNHSVGIALAK 326
>pdb|1M43|A Chain A, Crystal Structure Of Pmii In Complex With Pepstatin A To
2.4 A
pdb|1M43|B Chain B, Crystal Structure Of Pmii In Complex With Pepstatin A To
2.4 A
pdb|1LEE|A Chain A, Crystal Structure Of Plasmepsin From P. Falciparum In
Complex With Inhibitor Rs367
pdb|1LF2|A Chain A, Crystal Structure Of Plasmepsin Ii From P Falciparum In
Complex With Inhibitor Rs370
Length = 331
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 47/225 (20%), Positives = 88/225 (39%), Gaps = 36/225 (16%)
Query: 251 DGVMGLGLGDVSVPSLLAKAGLIQNSFSICFDENDSGSVFFGDQGPATQQSTSFLPIGEK 310
DG++GLG D+S+ S+ ++N +N + F P + T FL IG
Sbjct: 123 DGILGLGWKDLSIGSVDPIVVELKN-------QNKIENALFTFYLPVHDKHTGFLTIGGI 175
Query: 311 YDAYFVGVESY---------------CIGNSCLTQSGFQALVDSGASFTFLPTEIYAEVV 355
+ ++ G +Y +GN L ++ +VDSG S +PT+ +++
Sbjct: 176 EERFYEGPLTYEKLNHDLYWQITLDAHVGNISLEKA--NCIVDSGTSAITVPTDFLNKML 233
Query: 356 VKFDKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMRLIFSKNQSFVVRNHIFSFPENEG 415
D + ++ C N+ K+P + + + E+ G
Sbjct: 234 QNLDVI----KVPFLPFYVTLCNNS------KLPTFEFTSENGKYTLEPEYYLQHIEDVG 283
Query: 416 FTVFCLTVMSTDGDYG--IIGQNFMMGHRIVFDRENLKLAWSHSK 458
+ L ++ D I+G FM + VFD +N + + +K
Sbjct: 284 PGLCMLNIIGLDFPVPTFILGDPFMRKYFTVFDYDNHSVGIALAK 328
>pdb|1LF3|A Chain A, Crystal Structure Of Plasmepsin Ii From P Falciparum In
Complex With Inhibitor Eh58
pdb|1LF4|A Chain A, Structure Of Plasmepsin Ii
pdb|1XDH|A Chain A, Structure Of Plasmepsin Ii In Complex With Pepstatin A
pdb|1XDH|B Chain B, Structure Of Plasmepsin Ii In Complex With Pepstatin A
pdb|1W6H|A Chain A, Novel Plasmepsin Ii-inhibitor Complex
pdb|1W6H|B Chain B, Novel Plasmepsin Ii-inhibitor Complex
pdb|1W6I|A Chain A, Plasmepsin Ii-Pepstatin A Complex
pdb|1W6I|C Chain C, Plasmepsin Ii-Pepstatin A Complex
Length = 331
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 47/225 (20%), Positives = 88/225 (39%), Gaps = 36/225 (16%)
Query: 251 DGVMGLGLGDVSVPSLLAKAGLIQNSFSICFDENDSGSVFFGDQGPATQQSTSFLPIGEK 310
DG++GLG D+S+ S+ ++N +N + F P + T FL IG
Sbjct: 123 DGILGLGWKDLSIGSVDPIVVELKN-------QNKIENALFTFYLPVHDKHTGFLTIGGI 175
Query: 311 YDAYFVGVESY---------------CIGNSCLTQSGFQALVDSGASFTFLPTEIYAEVV 355
+ ++ G +Y +GN L ++ +VDSG S +PT+ +++
Sbjct: 176 EERFYEGPLTYEKLNHDLYWQITLDAHVGNIMLEKA--NCIVDSGTSAITVPTDFLNKML 233
Query: 356 VKFDKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMRLIFSKNQSFVVRNHIFSFPENEG 415
D + ++ C N+ K+P + + + E+ G
Sbjct: 234 QNLDVI----KVPFLPFYVTLCNNS------KLPTFEFTSENGKYTLEPEYYLQHIEDVG 283
Query: 416 FTVFCLTVMSTDGDYG--IIGQNFMMGHRIVFDRENLKLAWSHSK 458
+ L ++ D I+G FM + VFD +N + + +K
Sbjct: 284 PGLCMLNIIGLDFPVPTFILGDPFMRKYFTVFDYDNHSVGIALAK 328
>pdb|2X0B|A Chain A, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|C Chain C, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|E Chain E, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|G Chain G, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
Length = 383
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 74/369 (20%), Positives = 140/369 (37%), Gaps = 68/369 (18%)
Query: 110 HYTWIDIGTPNVSFLVALDAGSNLLWVPCQCIQCAPLSASYYTSLDRNLXXXXXXXXXXX 169
+Y I IGTP +F V D GS+ +WVP +C+ L YT+
Sbjct: 63 YYGEIGIGTPPQTFKVVFDTGSSNVWVPSS--KCSRL----YTAC--------------- 101
Query: 170 XXXXXXHPXXXXXXXXXXXXDPCPYIADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQ 229
H + YST + SG+L DI+ + +
Sbjct: 102 ----VYHKLFDASDSSSYKHNGTELTLRYST--GTVSGFLSQDIITVG---------GIT 146
Query: 230 SSVIIGCGRKQTGSYLDGAAPDGVMGLG-----LGDVS--VPSLLAKAGLIQNSFSICFD 282
+ + G + A DGV+G+G +G V+ +++++ L ++ FS ++
Sbjct: 147 VTQMFGEVTEMPALPFMLAEFDGVVGMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYN 206
Query: 283 ENDS------GSVFFGDQGPATQQSTSFLPIGEKYDAYFVGVESYCIGNSCLT-QSGFQA 335
+ G + G P + K + + ++ +G+S L + G A
Sbjct: 207 RDSENSQSLGGQIVLGGSDPQHYEGNFHYINLIKTGVWQIQMKGVSVGSSTLLCEDGCLA 266
Query: 336 LVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMRLIF 395
LVD+GAS+ T +++ + L + KR+ + Y E +PD+
Sbjct: 267 LVDTGASYISGSTSSIEKLM---EALGAKKRL--------FDYVVKCNEGPTLPDISFHL 315
Query: 396 SKNQSFVVRNHIFSFPENEGFTVFC-LTVMSTD-----GDYGIIGQNFMMGHRIVFDREN 449
+ + + + + F E+ C L + + D G +G F+ FDR N
Sbjct: 316 G-GKEYTLTSADYVFQESYSSKKLCTLAIHAMDIPPPTGPTWALGATFIRKFYTEFDRRN 374
Query: 450 LKLAWSHSK 458
++ ++ ++
Sbjct: 375 NRIGFALAR 383
>pdb|3AUP|A Chain A, Crystal Structure Of Basic 7s Globulin From Soybean
pdb|3AUP|B Chain B, Crystal Structure Of Basic 7s Globulin From Soybean
pdb|3AUP|C Chain C, Crystal Structure Of Basic 7s Globulin From Soybean
pdb|3AUP|D Chain D, Crystal Structure Of Basic 7s Globulin From Soybean
Length = 403
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 251 DGVMGLGLGDVSVPSLLAKAGLIQNSFSICFDE--NDSGSVFFGD 293
GV GLG +S+P+ LA +Q F+ C G++ FGD
Sbjct: 156 QGVAGLGHAPISLPNQLASHFGLQRQFTTCLSRYPTSKGAIIFGD 200
>pdb|1PFZ|A Chain A, Proplasmepsin Ii From Plasmodium Falciparum
pdb|1PFZ|B Chain B, Proplasmepsin Ii From Plasmodium Falciparum
pdb|1PFZ|C Chain C, Proplasmepsin Ii From Plasmodium Falciparum
pdb|1PFZ|D Chain D, Proplasmepsin Ii From Plasmodium Falciparum
Length = 380
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 47/225 (20%), Positives = 88/225 (39%), Gaps = 36/225 (16%)
Query: 251 DGVMGLGLGDVSVPSLLAKAGLIQNSFSICFDENDSGSVFFGDQGPATQQSTSFLPIGEK 310
DG++GLG D+S+ S+ ++N +N + F P + T FL IG
Sbjct: 172 DGILGLGWKDLSIGSVDPIVVELKN-------QNKIENALFTFYLPVHDKHTGFLTIGGI 224
Query: 311 YDAYFVGVESY---------------CIGNSCLTQSGFQALVDSGASFTFLPTEIYAEVV 355
+ ++ G +Y +GN L ++ +VDSG S +PT+ +++
Sbjct: 225 EERFYEGPLTYEKLNHDLYWQITLDAHVGNIMLEKA--NCIVDSGTSAITVPTDFLNKML 282
Query: 356 VKFDKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMRLIFSKNQSFVVRNHIFSFPENEG 415
D + ++ C N+ K+P + + + E+ G
Sbjct: 283 QNLDVI----KVPFLPFYVTLCNNS------KLPTFEFTSENGKYTLEPEYYLQHIEDVG 332
Query: 416 FTVFCLTVMSTDGDYG--IIGQNFMMGHRIVFDRENLKLAWSHSK 458
+ L ++ D I+G FM + VFD +N + + +K
Sbjct: 333 PGLCMLNIIGLDFPVPTFILGDPFMRKYFTVFDYDNHSVGIALAK 377
>pdb|2BJU|A Chain A, Plasmepsin Ii Complexed With A Highly Active Achiral
Inhibitor
Length = 453
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 53/124 (42%), Gaps = 24/124 (19%)
Query: 251 DGVMGLGLGDVSVPSLLAKAGLIQNSFSICFDENDSGSVFFGDQGPATQQSTSFLPIGEK 310
DG++GLG D+S+ S+ ++N +N + F P + T FL IG
Sbjct: 245 DGILGLGWKDLSIGSVDPIVVELKN-------QNKIENALFTFYLPVHDKHTGFLTIGGI 297
Query: 311 YDAYFVGVESY---------------CIGNSCLTQSGFQALVDSGASFTFLPTEIYAEVV 355
+ ++ G +Y +GN L ++ +VDSG S +PT+ +++
Sbjct: 298 EERFYEGPLTYEKLNHDLYWQITLDAHVGNIMLEKA--NCIVDSGTSAITVPTDFLNKML 355
Query: 356 VKFD 359
D
Sbjct: 356 QNLD 359
>pdb|1HRN|A Chain A, High Resolution Crystal Structures Of Recombinant Human
Renin In Complex With Polyhydroxymonoamide Inhibitors
pdb|1HRN|B Chain B, High Resolution Crystal Structures Of Recombinant Human
Renin In Complex With Polyhydroxymonoamide Inhibitors
pdb|1BIM|A Chain A, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIM|B Chain B, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIL|A Chain A, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIL|B Chain B, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|3GW5|A Chain A, Crystal Structure Of Human Renin Complexed With A Novel
Inhibitor
pdb|3GW5|B Chain B, Crystal Structure Of Human Renin Complexed With A Novel
Inhibitor
pdb|3KM4|A Chain A, Optimization Of Orally Bioavailable Alkyl Amine Renin
Inhibitors
pdb|3KM4|B Chain B, Optimization Of Orally Bioavailable Alkyl Amine Renin
Inhibitors
Length = 337
Score = 32.7 bits (73), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 74/369 (20%), Positives = 140/369 (37%), Gaps = 68/369 (18%)
Query: 110 HYTWIDIGTPNVSFLVALDAGSNLLWVPCQCIQCAPLSASYYTSLDRNLXXXXXXXXXXX 169
+Y I IGTP +F V D GS+ +WVP +C+ L YT+
Sbjct: 17 YYGEIGIGTPPQTFKVVFDTGSSNVWVPSS--KCSRL----YTAC--------------- 55
Query: 170 XXXXXXHPXXXXXXXXXXXXDPCPYIADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQ 229
H + YST + SG+L DI+ + +
Sbjct: 56 ----VYHKLFDASDSSSYKHNGTELTLRYST--GTVSGFLSQDIITVG---------GIT 100
Query: 230 SSVIIGCGRKQTGSYLDGAAPDGVMGLG-----LGDVS--VPSLLAKAGLIQNSFSICFD 282
+ + G + A DGV+G+G +G V+ +++++ L ++ FS ++
Sbjct: 101 VTQMFGEVTEMPALPFMLAEFDGVVGMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYN 160
Query: 283 END------SGSVFFGDQGPATQQSTSFLPIGEKYDAYFVGVESYCIGNSCLT-QSGFQA 335
+ G + G P + K + + ++ +G+S L + G A
Sbjct: 161 RDSENSQSLGGQIVLGGSDPQHYEGNFHYINLIKTGVWQIQMKGVSVGSSTLLCEDGCLA 220
Query: 336 LVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMRLIF 395
LVD+GAS+ T +++ + L + KR+ + Y E +PD+
Sbjct: 221 LVDTGASYISGSTSSIEKLM---EALGAKKRL--------FDYVVKCNEGPTLPDISFHL 269
Query: 396 SKNQSFVVRNHIFSFPENEGFTVFC-LTVMSTD-----GDYGIIGQNFMMGHRIVFDREN 449
+ + + + + F E+ C L + + D G +G F+ FDR N
Sbjct: 270 G-GKEYTLTSADYVFQESYSSKKLCTLAIHAMDIPPPTGPTWALGATFIRKFYTEFDRRN 328
Query: 450 LKLAWSHSK 458
++ ++ ++
Sbjct: 329 NRIGFALAR 337
>pdb|2G24|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G24|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G26|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G26|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G27|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G27|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2FS4|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2FS4|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1N|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1N|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1O|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1O|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1R|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1R|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1S|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1S|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1Y|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1Y|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G20|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G20|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G21|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G21|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G22|A Chain A, Ketopiperazine-based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G22|B Chain B, Ketopiperazine-based Renin Inhibitors: Optimization Of The
"c" Ring
Length = 333
Score = 32.7 bits (73), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 74/369 (20%), Positives = 140/369 (37%), Gaps = 68/369 (18%)
Query: 110 HYTWIDIGTPNVSFLVALDAGSNLLWVPCQCIQCAPLSASYYTSLDRNLXXXXXXXXXXX 169
+Y I IGTP +F V D GS+ +WVP +C+ L YT+
Sbjct: 13 YYGEIGIGTPPQTFKVVFDTGSSNVWVPSS--KCSRL----YTAC--------------- 51
Query: 170 XXXXXXHPXXXXXXXXXXXXDPCPYIADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQ 229
H + YST + SG+L DI+ + +
Sbjct: 52 ----VYHKLFDASDSSSYKHNGTELTLRYST--GTVSGFLSQDIITVG---------GIT 96
Query: 230 SSVIIGCGRKQTGSYLDGAAPDGVMGLG-----LGDVS--VPSLLAKAGLIQNSFSICFD 282
+ + G + A DGV+G+G +G V+ +++++ L ++ FS ++
Sbjct: 97 VTQMFGEVTEMPALPFMLAEFDGVVGMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYN 156
Query: 283 END------SGSVFFGDQGPATQQSTSFLPIGEKYDAYFVGVESYCIGNSCLT-QSGFQA 335
+ G + G P + K + + ++ +G+S L + G A
Sbjct: 157 RDSENSQSLGGQIVLGGSDPQHYEGNFHYINLIKTGVWQIQMKGVSVGSSTLLCEDGCLA 216
Query: 336 LVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMRLIF 395
LVD+GAS+ T +++ + L + KR+ + Y E +PD+
Sbjct: 217 LVDTGASYISGSTSSIEKLM---EALGAKKRL--------FDYVVKCNEGPTLPDISFHL 265
Query: 396 SKNQSFVVRNHIFSFPENEGFTVFC-LTVMSTD-----GDYGIIGQNFMMGHRIVFDREN 449
+ + + + + F E+ C L + + D G +G F+ FDR N
Sbjct: 266 G-GKEYTLTSADYVFQESYSSKKLCTLAIHAMDIPPPTGPTWALGATFIRKFYTEFDRRN 324
Query: 450 LKLAWSHSK 458
++ ++ ++
Sbjct: 325 NRIGFALAR 333
>pdb|2I4Q|A Chain A, Human ReninPF02342674 COMPLEX
pdb|2I4Q|B Chain B, Human ReninPF02342674 COMPLEX
Length = 336
Score = 32.7 bits (73), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 74/369 (20%), Positives = 140/369 (37%), Gaps = 68/369 (18%)
Query: 110 HYTWIDIGTPNVSFLVALDAGSNLLWVPCQCIQCAPLSASYYTSLDRNLXXXXXXXXXXX 169
+Y I IGTP +F V D GS+ +WVP +C+ L YT+
Sbjct: 16 YYGEIGIGTPPQTFKVVFDTGSSNVWVPSS--KCSRL----YTAC--------------- 54
Query: 170 XXXXXXHPXXXXXXXXXXXXDPCPYIADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQ 229
H + YST + SG+L DI+ + +
Sbjct: 55 ----VYHKLFDASDSSSYKHNGTELTLRYST--GTVSGFLSQDIITVG---------GIT 99
Query: 230 SSVIIGCGRKQTGSYLDGAAPDGVMGLG-----LGDVS--VPSLLAKAGLIQNSFSICFD 282
+ + G + A DGV+G+G +G V+ +++++ L ++ FS ++
Sbjct: 100 VTQMFGEVTEMPALPFMLAEFDGVVGMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYN 159
Query: 283 END------SGSVFFGDQGPATQQSTSFLPIGEKYDAYFVGVESYCIGNSCLT-QSGFQA 335
+ G + G P + K + + ++ +G+S L + G A
Sbjct: 160 RDSENSQSLGGQIVLGGSDPQHYEGNFHYINLIKTGVWQIQMKGVSVGSSTLLCEDGCLA 219
Query: 336 LVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMRLIF 395
LVD+GAS+ T +++ + L + KR+ + Y E +PD+
Sbjct: 220 LVDTGASYISGSTSSIEKLM---EALGAKKRL--------FDYVVKCNEGPTLPDISFHL 268
Query: 396 SKNQSFVVRNHIFSFPENEGFTVFC-LTVMSTD-----GDYGIIGQNFMMGHRIVFDREN 449
+ + + + + F E+ C L + + D G +G F+ FDR N
Sbjct: 269 G-GKEYTLTSADYVFQESYSSKKLCTLAIHAMDIPPPTGPTWALGATFIRKFYTEFDRRN 327
Query: 450 LKLAWSHSK 458
++ ++ ++
Sbjct: 328 NRIGFALAR 336
>pdb|3D91|A Chain A, Human Renin In Complex With Remikiren
pdb|3D91|B Chain B, Human Renin In Complex With Remikiren
pdb|3G6Z|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G6Z|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G70|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G70|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3K1W|A Chain A, New Classes Of Potent And Bioavailable Human Renin
Inhibitors
pdb|3K1W|B Chain B, New Classes Of Potent And Bioavailable Human Renin
Inhibitors
pdb|3OWN|A Chain A, Potent Macrocyclic Renin Inhibitors
pdb|3OWN|B Chain B, Potent Macrocyclic Renin Inhibitors
Length = 341
Score = 32.7 bits (73), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 74/369 (20%), Positives = 140/369 (37%), Gaps = 68/369 (18%)
Query: 110 HYTWIDIGTPNVSFLVALDAGSNLLWVPCQCIQCAPLSASYYTSLDRNLXXXXXXXXXXX 169
+Y I IGTP +F V D GS+ +WVP +C+ L YT+
Sbjct: 20 YYGEIGIGTPPQTFKVVFDTGSSNVWVPSS--KCSRL----YTAC--------------- 58
Query: 170 XXXXXXHPXXXXXXXXXXXXDPCPYIADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQ 229
H + YST + SG+L DI+ + +
Sbjct: 59 ----VYHKLFDASDSSSYKHNGTELTLRYSTG--TVSGFLSQDIITVG---------GIT 103
Query: 230 SSVIIGCGRKQTGSYLDGAAPDGVMGLG-----LGDVS--VPSLLAKAGLIQNSFSICFD 282
+ + G + A DGV+G+G +G V+ +++++ L ++ FS ++
Sbjct: 104 VTQMFGEVTEMPALPFMLAEFDGVVGMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYN 163
Query: 283 END------SGSVFFGDQGPATQQSTSFLPIGEKYDAYFVGVESYCIGNSCLT-QSGFQA 335
+ G + G P + K + + ++ +G+S L + G A
Sbjct: 164 RDSENSQSLGGQIVLGGSDPQHYEGNFHYINLIKTGVWQIQMKGVSVGSSTLLCEDGCLA 223
Query: 336 LVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMRLIF 395
LVD+GAS+ T +++ + L + KR+ + Y E +PD+
Sbjct: 224 LVDTGASYISGSTSSIEKLM---EALGAKKRL--------FDYVVKCNEGPTLPDISFHL 272
Query: 396 SKNQSFVVRNHIFSFPENEGFTVFC-LTVMSTD-----GDYGIIGQNFMMGHRIVFDREN 449
+ + + + + F E+ C L + + D G +G F+ FDR N
Sbjct: 273 G-GKEYTLTSADYVFQESYSSKKLCTLAIHAMDIPPPTGPTWALGATFIRKFYTEFDRRN 331
Query: 450 LKLAWSHSK 458
++ ++ ++
Sbjct: 332 NRIGFALAR 340
>pdb|3OAD|A Chain A, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAD|C Chain C, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAG|A Chain A, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAG|C Chain C, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3O9L|A Chain A, Design And Optimisation Of New Piperidines As Renin
Inhibitors
pdb|3O9L|C Chain C, Design And Optimisation Of New Piperidines As Renin
Inhibitors
Length = 166
Score = 32.7 bits (73), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 110 HYTWIDIGTPNVSFLVALDAGSNLLWVPCQCIQCAPL 146
+Y I IGTP +F V D GS+ +WVP +C+ L
Sbjct: 20 YYGEIGIGTPPQTFKVVFDTGSSNVWVPSS--KCSRL 54
>pdb|2H6S|A Chain A, Secreted Aspartic Proteinase (sap) 3 From Candida Albicans
pdb|2H6T|A Chain A, Secreted Aspartic Proteinase (Sap) 3 From Candida Albicans
Complexed With Pepstatin A
Length = 340
Score = 32.3 bits (72), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 54/244 (22%), Positives = 96/244 (39%), Gaps = 36/244 (14%)
Query: 234 IGCGRKQTGSYLDGAAPDGVMGLGL------GDV-SVPSLLAKAGLI-QNSFSICFD--E 283
I ++Q + G++G+G G+ +VP L G+I +N++S+ + +
Sbjct: 103 ISITKQQFADVTSTSVDQGILGIGYKTHEAEGNYDNVPVTLKNQGIISKNAYSLYLNSRQ 162
Query: 284 NDSGSVFFGDQGPATQQSTSF-LPIGEKYDAYFVGVESYCIGNSCLTQSGFQALVDSGAS 342
SG + FG A T LP+ + G S + L+DSG +
Sbjct: 163 ATSGQIIFGGVDNAKYSGTLIALPVTSDNELRIHLNTVKVAGQSI--NADVDVLLDSGTT 220
Query: 343 FTFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYCYNASSEEMLKVP-----DMRLIFSK 397
T+L + +V+ F+ + Y+A+ V + F K
Sbjct: 221 ITYLQQGVADQVISAFNG--------------QETYDANGNLFYLVDCNLSGSVDFAFDK 266
Query: 398 NQSFVVRNHIFSFP-ENEGFTVF--CLTVMSTDGDYGIIGQNFMMGHRIVFDRENLKLAW 454
N V F+ P E V+ C + T DY I+G NF+ IV+D ++ +++
Sbjct: 267 NAKISVPASEFTAPLYTEDGQVYDQCQLLFGT-SDYNILGDNFLRSAYIVYDLDDNEISL 325
Query: 455 SHSK 458
+ K
Sbjct: 326 AQVK 329
>pdb|2BKS|A Chain A, Crystal Structure Of Renin-Pf00074777 Complex
pdb|2BKS|B Chain B, Crystal Structure Of Renin-Pf00074777 Complex
pdb|2BKT|A Chain A, Crystal Structure Of Renin-Pf00257567 Complex
pdb|2BKT|B Chain B, Crystal Structure Of Renin-Pf00257567 Complex
pdb|2IKO|A Chain A, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2IKO|B Chain B, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2IKU|A Chain A, Crystal Structure Of Human Renin Complexed With Inhibitors
pdb|2IKU|B Chain B, Crystal Structure Of Human Renin Complexed With Inhibitors
pdb|2IL2|A Chain A, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2IL2|B Chain B, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2V0Z|C Chain C, Crystal Structure Of Renin With Inhibitor 10 (Aliskiren)
pdb|2V0Z|O Chain O, Crystal Structure Of Renin With Inhibitor 10 (Aliskiren)
pdb|2V10|C Chain C, Crystal Structure Of Renin With Inhibitor 9
pdb|2V10|O Chain O, Crystal Structure Of Renin With Inhibitor 9
pdb|2V11|C Chain C, Crystal Structure Of Renin With Inhibitor 6
pdb|2V11|O Chain O, Crystal Structure Of Renin With Inhibitor 6
pdb|2V12|C Chain C, Crystal Structure Of Renin With Inhibitor 8
pdb|2V12|O Chain O, Crystal Structure Of Renin With Inhibitor 8
pdb|1BBS|A Chain A, X-Ray Analyses Of Peptide Inhibitor Complexes Define The
Structural Basis Of Specificity For Human And Mouse
Renins
pdb|1BBS|B Chain B, X-Ray Analyses Of Peptide Inhibitor Complexes Define The
Structural Basis Of Specificity For Human And Mouse
Renins
pdb|1RNE|A Chain A, The Crystal Structure Of Recombinant Glycosylated Human
Renin Alone And In Complex With A Transition State
Analog Inhibitor
pdb|2REN|A Chain A, Structure Of Recombinant Human Renin, A Target For
Cardiovascular- Active Drugs, At 2.5 Angstroms
Resolution
pdb|2V13|A Chain A, Crystal Structure Of Renin With Inhibitor 7
pdb|2V16|C Chain C, Crystal Structure Of Renin With Inhibitor 3
pdb|2V16|O Chain O, Crystal Structure Of Renin With Inhibitor 3
pdb|3G72|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G72|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3OQF|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazine
Inhibitor Complexes
pdb|3OQF|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazine
Inhibitor Complexes
pdb|3OOT|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OOT|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OQK|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OQK|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3Q3T|A Chain A, Alkyl Amine Renin Inhibitors: Filling S1 From S3
pdb|3Q3T|B Chain B, Alkyl Amine Renin Inhibitors: Filling S1 From S3
pdb|3SFC|A Chain A, Structure-Based Optimization Of Potent 4- And
6-Azaindole-3- Carboxamides As Renin Inhibitors
pdb|3SFC|B Chain B, Structure-Based Optimization Of Potent 4- And
6-Azaindole-3- Carboxamides As Renin Inhibitors
pdb|3Q4B|A Chain A, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q4B|B Chain B, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q5H|A Chain A, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q5H|B Chain B, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3VSW|A Chain A, Human Renin In Complex With Compound 8
pdb|3VSW|B Chain B, Human Renin In Complex With Compound 8
pdb|3VSX|A Chain A, Human Renin In Complex With Compound 18
pdb|3VSX|B Chain B, Human Renin In Complex With Compound 18
pdb|3VYD|A Chain A, Human Renin In Complex With Inhibitor 6
pdb|3VYD|B Chain B, Human Renin In Complex With Inhibitor 6
pdb|3VYE|A Chain A, Human Renin In Complex With Inhibitor 7
pdb|3VYE|B Chain B, Human Renin In Complex With Inhibitor 7
pdb|3VYF|A Chain A, Human Renin In Complex With Inhibitor 9
pdb|3VYF|B Chain B, Human Renin In Complex With Inhibitor 9
pdb|4GJ8|A Chain A, Crystal Structure Of Renin In Complex With Pkf909-724
(compound 3)
pdb|4GJ8|B Chain B, Crystal Structure Of Renin In Complex With Pkf909-724
(compound 3)
pdb|4GJ9|A Chain A, Crystal Structure Of Renin In Complex With Gp055321
(compound 4)
pdb|4GJ9|B Chain B, Crystal Structure Of Renin In Complex With Gp055321
(compound 4)
pdb|4GJA|A Chain A, Crystal Structure Of Renin In Complex With Nvp-ayl747
(compound 5)
pdb|4GJA|B Chain B, Crystal Structure Of Renin In Complex With Nvp-ayl747
(compound 5)
pdb|4GJB|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bbv031
(compound 6)
pdb|4GJB|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bbv031
(compound 6)
pdb|4GJC|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bch965
(compound 9)
pdb|4GJC|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bch965
(compound 9)
pdb|4GJD|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bgq311
(compound 12)
pdb|4GJD|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bgq311
(compound 12)
Length = 340
Score = 32.3 bits (72), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 74/369 (20%), Positives = 140/369 (37%), Gaps = 68/369 (18%)
Query: 110 HYTWIDIGTPNVSFLVALDAGSNLLWVPCQCIQCAPLSASYYTSLDRNLXXXXXXXXXXX 169
+Y I IGTP +F V D GS+ +WVP +C+ L YT+
Sbjct: 20 YYGEIGIGTPPQTFKVVFDTGSSNVWVPSS--KCSRL----YTAC--------------- 58
Query: 170 XXXXXXHPXXXXXXXXXXXXDPCPYIADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQ 229
H + YST + SG+L DI+ + +
Sbjct: 59 ----VYHKLFDASDSSSYKHNGTELTLRYSTG--TVSGFLSQDIITVG---------GIT 103
Query: 230 SSVIIGCGRKQTGSYLDGAAPDGVMGLG-----LGDVS--VPSLLAKAGLIQNSFSICFD 282
+ + G + A DGV+G+G +G V+ +++++ L ++ FS ++
Sbjct: 104 VTQMFGEVTEMPALPFMLAEFDGVVGMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYN 163
Query: 283 END------SGSVFFGDQGPATQQSTSFLPIGEKYDAYFVGVESYCIGNSCLT-QSGFQA 335
+ G + G P + K + + ++ +G+S L + G A
Sbjct: 164 RDSENSQSLGGQIVLGGSDPQHYEGNFHYINLIKTGVWQIQMKGVSVGSSTLLCEDGCLA 223
Query: 336 LVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMRLIF 395
LVD+GAS+ T +++ + L + KR+ + Y E +PD+
Sbjct: 224 LVDTGASYISGSTSSIEKLM---EALGAKKRL--------FDYVVKCNEGPTLPDISFHL 272
Query: 396 SKNQSFVVRNHIFSFPENEGFTVFC-LTVMSTD-----GDYGIIGQNFMMGHRIVFDREN 449
+ + + + + F E+ C L + + D G +G F+ FDR N
Sbjct: 273 G-GKEYTLTSADYVFQESYSSKKLCTLAIHAMDIPPPTGPTWALGATFIRKFYTEFDRRN 331
Query: 450 LKLAWSHSK 458
++ ++ ++
Sbjct: 332 NRIGFALAR 340
>pdb|4B1C|A Chain A, New Aminoimidazoles As Bace-1 Inhibitors: From Rational
Design To Ab-Lowering In Brain
Length = 375
Score = 32.3 bits (72), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 62/271 (22%), Positives = 108/271 (39%), Gaps = 34/271 (12%)
Query: 222 HAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVSVP--SL------LAKAGLI 273
H P +V+++ I + +++G+ +G++GL +++ P SL L K +
Sbjct: 95 HGPNVTVRAN--IAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHV 152
Query: 274 QNSFSICFDENDSGSVFFGDQGPATQQSTSFLPIGEK--YDAYFVGVE--SYCIGNSCLT 329
N FS+ S + D T S + PI + Y+ V VE + C
Sbjct: 153 PNLFSLQLCGGGSMIIGGIDHSLYTG-SLWYTPIRREWYYEVIIVRVEINGQDLKMDCKE 211
Query: 330 QSGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQG---NSWKYCYNASSEEML 386
+ +++VDSG + LP +++ E VK K SS G C+ A +
Sbjct: 212 YNYDKSIVDSGTTNLRLPKKVF-EAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWN 270
Query: 387 KVPDMRLIFS---KNQSFVV----RNHIFSFPENEGFTVFCLTVMSTDGDYG-IIGQNFM 438
P + L NQSF + + ++ + C + G ++G M
Sbjct: 271 IFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIM 330
Query: 439 MGHRIVFDRENLKLAWSHSKCEEVIDKSHVH 469
G +VFDR ++ ++ S C HVH
Sbjct: 331 EGFYVVFDRARKRIGFAVSAC-------HVH 354
>pdb|1LYA|B Chain B, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYA|D Chain D, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYW|B Chain B, Cathepsin D At Ph 7.5
pdb|1LYW|D Chain D, Cathepsin D At Ph 7.5
pdb|1LYW|F Chain F, Cathepsin D At Ph 7.5
pdb|1LYW|H Chain H, Cathepsin D At Ph 7.5
pdb|1LYB|B Chain B, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYB|D Chain D, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
Length = 241
Score = 32.0 bits (71), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 54/245 (22%), Positives = 103/245 (42%), Gaps = 33/245 (13%)
Query: 233 IIGCGRKQTGSYLDGAAPDGVMGLGLGDVSV-------PSLLAKAGLIQNSFSICF---- 281
+ G KQ G A DG++G+ +SV +L+ + + QN FS
Sbjct: 9 VFGEATKQPGITFIAAKFDGILGMAYPRISVNNVLPVFDNLMQQKLVDQNIFSFYLSRDP 68
Query: 282 DENDSGSVFFGD-QGPATQQSTSFLPIGEKYDAYF-VGVESYCIGNS-CLTQSGFQALVD 338
D G + G + S S+L + K AY+ V ++ + + L + G +A+VD
Sbjct: 69 DAQPGGELMLGGTDSKYYKGSLSYLNVTRK--AYWQVHLDQVEVASGLTLCKEGCEAIVD 126
Query: 339 SGASFTFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMRLIFSKN 398
+G S P + V + K + + + +QG Y E++ +P + L
Sbjct: 127 TGTSLMVGPV----DEVRELQKAIGAVPL-IQGE-----YMIPCEKVSTLPAITLKLG-G 175
Query: 399 QSFVVRNHIFSFPENEGFTVFCLT-VMSTD-----GDYGIIGQNFMMGHRIVFDRENLKL 452
+ + + ++ ++ CL+ M D G I+G F+ + VFDR+N ++
Sbjct: 176 KGYKLSPEDYTLKVSQAGKTLCLSGFMGMDIPPPSGPLWILGDVFIGRYYTVFDRDNNRV 235
Query: 453 AWSHS 457
++ +
Sbjct: 236 GFAEA 240
>pdb|1LYW|A Chain A, Cathepsin D At Ph 7.5
pdb|1LYW|C Chain C, Cathepsin D At Ph 7.5
pdb|1LYW|E Chain E, Cathepsin D At Ph 7.5
pdb|1LYW|G Chain G, Cathepsin D At Ph 7.5
pdb|1LYA|A Chain A, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYA|C Chain C, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYB|A Chain A, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYB|C Chain C, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
Length = 97
Score = 32.0 bits (71), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 17/28 (60%)
Query: 110 HYTWIDIGTPNVSFLVALDAGSNLLWVP 137
+Y I IGTP F V D GS+ LWVP
Sbjct: 15 YYGEIGIGTPPQCFTVVFDTGSSNLWVP 42
>pdb|1J71|A Chain A, Structure Of The Extracellular Aspartic Proteinase From
Candida Tropicalis Yeast
Length = 334
Score = 32.0 bits (71), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 50/224 (22%), Positives = 93/224 (41%), Gaps = 38/224 (16%)
Query: 252 GVMGLG---------LGDVSVPSLLAKAGLI-QNSFSICFDEND--SGSVFFGDQGPATQ 299
G+MG+G L D +VP L K G+I +N++S+ + D +G + FG A
Sbjct: 122 GIMGIGFTADEAGYNLYD-NVPVTLKKQGIINKNAYSLYLNSEDASTGKIIFGGVDNAKY 180
Query: 300 QST-SFLPIGEKYDAYFVGVESYCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEVVVKF 358
T + LP+ + G S T + ++DSG + T+ F
Sbjct: 181 TGTLTALPVTSSVELRVHLGSINFDGTSVSTNA--DVVLDSGTTITY------------F 226
Query: 359 DKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMRL----IFSKNQSFVVRNHIFSFPENE 414
+ + K + G +W S E+ ++P L +F+ +Q + + +
Sbjct: 227 SQSTADKFARIVGATWD-----SRNEIYRLPSCDLSGDAVFNFDQGVKITVPLSELILKD 281
Query: 415 GFTVFCLTVMSTDGDYGIIGQNFMMGHRIVFDRENLKLAWSHSK 458
+ C +S + D I+G NF+ IV+D ++ ++ + K
Sbjct: 282 SDSSICYFGISRN-DANILGDNFLRRAYIVYDLDDKTISLAQVK 324
>pdb|3VLB|A Chain A, Crystal Structure Of Xeg-Edgp
pdb|3VLB|C Chain C, Crystal Structure Of Xeg-Edgp
Length = 413
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 56/248 (22%), Positives = 96/248 (38%), Gaps = 51/248 (20%)
Query: 252 GVMGLGLGDVSVPSLLAKAGLIQNSFSICFDENDSGS--VFFGDQGPAT--------QQS 301
G+ GLG +++PS A A + F++C + S + + FG+ P T ++
Sbjct: 153 GMAGLGRTRIALPSQFASAFSFKRKFAMCLSGSTSSNSVIIFGND-PYTFLPNIIVSDKT 211
Query: 302 TSFLPI-------------GEKYDAYFVGVESYCIGNSCLTQSGFQALVDSGAS------ 342
++ P+ GE YF+GV+S I NS + L S A
Sbjct: 212 LTYTPLLTNPVSTSATSTQGEPSVEYFIGVKSIKI-NSKIVALNTSLLSISSAGLGGTKI 270
Query: 343 -----FTFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYCYNASSEEML------KVPDM 391
+T L T IY V F K +++ I+ + + S++ +L VP +
Sbjct: 271 STINPYTVLETSIYKAVTEAFIKESAARNITRVASVAPFGACFSTDNILSTRLGPSVPSI 330
Query: 392 RLIFSKNQ---SFVVRNHIFSFPENEGFTVFCLTVMSTDGDYGIIGQNFMMGHRIVFDRE 448
L+ + N + +N V CL V+ DG + + GH++ +
Sbjct: 331 DLVLQSESVVWTITGSNSMVYINDN----VVCLGVV--DGGSNLRTSIVIGGHQLEDNLV 384
Query: 449 NLKLAWSH 456
LA S
Sbjct: 385 QFDLATSR 392
>pdb|3VLA|A Chain A, Crystal Structure Of Edgp
Length = 413
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 56/248 (22%), Positives = 96/248 (38%), Gaps = 51/248 (20%)
Query: 252 GVMGLGLGDVSVPSLLAKAGLIQNSFSICFDENDSGS--VFFGDQGPAT--------QQS 301
G+ GLG +++PS A A + F++C + S + + FG+ P T ++
Sbjct: 153 GMAGLGRTRIALPSQFASAFSFKRKFAMCLSGSTSSNSVIIFGND-PYTFLPNIIVSDKT 211
Query: 302 TSFLPI-------------GEKYDAYFVGVESYCIGNSCLTQSGFQALVDSGAS------ 342
++ P+ GE YF+GV+S I NS + L S A
Sbjct: 212 LTYTPLLTNPVSTSATSTQGEPSVEYFIGVKSIKI-NSKIVALNTSLLSISSAGLGGTKI 270
Query: 343 -----FTFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYCYNASSEEML------KVPDM 391
+T L T IY V F K +++ I+ + + S++ +L VP +
Sbjct: 271 STINPYTVLETSIYKAVTEAFIKESAARNITRVASVAPFGACFSTDNILSTRLGPSVPSI 330
Query: 392 RLIFSKNQ---SFVVRNHIFSFPENEGFTVFCLTVMSTDGDYGIIGQNFMMGHRIVFDRE 448
L+ + N + +N V CL V+ DG + + GH++ +
Sbjct: 331 DLVLQSESVVWTITGSNSMVYINDN----VVCLGVV--DGGSNLRTSIVIGGHQLEDNLV 384
Query: 449 NLKLAWSH 456
LA S
Sbjct: 385 QFDLATSR 392
>pdb|3APR|E Chain E, Binding Of A Reduced Peptide Inhibitor To The Aspartic
Proteinase From Rhizopus Chinensis. Implications For A
Mechanism Of Action
pdb|4APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|5APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|6APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|2APR|A Chain A, Structure And Refinement At 1.8 Angstroms Resolution Of
The Aspartic Proteinase From Rhizopus Chinensis
Length = 325
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 81/367 (22%), Positives = 126/367 (34%), Gaps = 99/367 (26%)
Query: 110 HYTWIDIGTPNVSFLVALDAGSNLLWVPCQ-CIQCAPLSASYYTSLDRNLXXXXXXXXXX 168
+Y + IGTP F + D GS+ LW+ C C S T D N
Sbjct: 17 YYGQVTIGTPGKKFNLDFDTGSSDLWIASTLCTNCG----SGQTKYDPN----------- 61
Query: 169 XXXXXXXHPXXXXXXXXXXXXDPCPYIADYST------EDTSSSGYLVDDILHLASFSKH 222
Y AD T + +S+SG L D ++L
Sbjct: 62 ---------------------QSSTYQADGRTWSISYGDGSSASGILAKDNVNLGGL--- 97
Query: 223 APQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGL-------------------GDVSV 263
+ I +++ S+ G DG++GLG G +S
Sbjct: 98 -----LIKGQTIELAKREAASFASGPN-DGLLGLGFDTITTVRGVKTPMDNLISQGLISR 151
Query: 264 PSLLAKAGLIQNSFSICFDENDSGSVFFGDQGPATQQSTSFLPIGEKYDAYFVGVESYCI 323
P G +N + S F + S + +PI + + V+ +
Sbjct: 152 PIFGVYLGKAKNGGGGEYIFGGYDSTKF-------KGSLTTVPIDNSRGWWGITVDRATV 204
Query: 324 GNSCLTQSGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYCYNASSE 383
G S + S F ++D+G + LP I A V + S G+ Y S +
Sbjct: 205 GTSTVASS-FDGILDTGTTLLILPNNIAASVARAYGA-------SDNGDG---TYTISCD 253
Query: 384 EMLKVPDMRLIFSKN-QSFVVRNHIFSFPENEGFTVFCLTVMSTDGDYG--IIGQNFMMG 440
P L+FS N SF V F E +G C+ G++G IIG F+
Sbjct: 254 TSAFKP---LVFSINGASFQVSPDSLVFEEFQG---QCIAGFGY-GNWGFAIIGDTFLKN 306
Query: 441 HRIVFDR 447
+ +VF++
Sbjct: 307 NYVVFNQ 313
>pdb|2QZW|A Chain A, Secreted Aspartic Proteinase (Sap) 1 From Candida Albicans
pdb|2QZW|B Chain B, Secreted Aspartic Proteinase (Sap) 1 From Candida Albicans
Length = 341
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 44/223 (19%), Positives = 90/223 (40%), Gaps = 26/223 (11%)
Query: 250 PDGVMGLGL------GDV-SVPSLLAKAGLI-QNSFSICFDEND--SGSVFFGDQGPATQ 299
P G++G+G GD +VP L G+I +N++S+ + + +G + FG A
Sbjct: 120 PQGILGIGYKTNEAAGDYDNVPVTLKNQGVIAKNAYSLYLNSPNAATGQIIFGGVDKAKY 179
Query: 300 QSTSF-LPIGEKYDAYFVGVESYCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEVVVKF 358
+ +P+ + +G + L+DSG + T+L ++ +++ F
Sbjct: 180 SGSLIAVPVTSDRELRITLNSLKAVGKNI--NGNIDVLLDSGTTITYLQQDVAQDIIDAF 237
Query: 359 DKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMRLIFSKNQSFVVRNHIFSFP---ENEG 415
+ L+ + + + + + D F N V F+ P N
Sbjct: 238 -------QAELKSDGQGHTFYVTDCQTSGTVDFN--FDNNAKISVPASEFTAPLSYANGQ 288
Query: 416 FTVFCLTVMSTDGDYGIIGQNFMMGHRIVFDRENLKLAWSHSK 458
C ++ D I+G NF+ +V+D ++ K++ + K
Sbjct: 289 PYPKCQLLLGI-SDANILGDNFLRSAYLVYDLDDDKISLAQVK 330
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 114 IDIGTPNVSFLVALDAGSNLLWVPCQCIQC 143
I IG+ F V +D GS+ LWVP + C
Sbjct: 18 ITIGSNKQKFNVIVDTGSSDLWVPDASVTC 47
>pdb|1QDM|A Chain A, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase.
pdb|1QDM|B Chain B, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase.
pdb|1QDM|C Chain C, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase
Length = 478
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 110 HYTWIDIGTPNVSFLVALDAGSNLLWVP 137
++ I +GTP F V D GS+ LWVP
Sbjct: 54 YFGEIGVGTPPQKFTVIFDTGSSNLWVP 81
>pdb|1IBQ|A Chain A, Aspergillopepsin From Aspergillus Phoenicis
pdb|1IBQ|B Chain B, Aspergillopepsin From Aspergillus Phoenicis
Length = 325
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 54/122 (44%), Gaps = 11/122 (9%)
Query: 335 ALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMRLI 394
A+ D+G + L EI V + + VS + S + Y ++ S++ +PD ++
Sbjct: 211 AIADTGTTLILLDDEI----VSAYYEQVSGAQESYEAGG--YVFSCSTD----LPDFTVV 260
Query: 395 FSKNQSFVVRNHIFSFPENEGFTVFCLTVMSTDG-DYGIIGQNFMMGHRIVFDRENLKLA 453
++ V +I P + G + + S G I+G F+ +VF+ E KL
Sbjct: 261 IGDYKAVVPGKYINYAPVSTGSSTCYGGIQSNSGLGLSILGDVFLKSQYVVFNSEGPKLG 320
Query: 454 WS 455
++
Sbjct: 321 FA 322
>pdb|3EXO|A Chain A, Crystal Structure Of Bace1 Bound To Inhibitor
Length = 413
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 67/285 (23%), Positives = 113/285 (39%), Gaps = 48/285 (16%)
Query: 222 HAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVSVP--SL------LAKAGLI 273
H P +V+++ I + +++G+ +G++GL +++ P SL L K +
Sbjct: 109 HGPNVTVRAN--IAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHV 166
Query: 274 QNSFSI-----CFDENDS-------GSVFFG--DQGPATQQSTSFLPIGEK--YDAYFVG 317
N FS+ F N S GS+ G D T S + PI + Y+ V
Sbjct: 167 PNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTG-SLWYTPIRREWYYEVIIVR 225
Query: 318 VE--SYCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQG---N 372
VE + C + +++VDSG + LP +++ E VK K SS G
Sbjct: 226 VEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVF-EAAVKSIKAASSTEKFPDGFWLG 284
Query: 373 SWKYCYNASSEEMLKVPDMRLIFS---KNQSFVV----RNHIFSFPENEGFTVFCLTVMS 425
C+ A + P + L NQSF + + ++ + C
Sbjct: 285 EQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAI 344
Query: 426 TDGDYG-IIGQNFMMGHRIVFDRENLKLAWSHSKCEEVIDKSHVH 469
+ G ++G M G +VFDR ++ ++ S C HVH
Sbjct: 345 SQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC-------HVH 382
>pdb|1W50|A Chain A, Apo Structure Of Bace (beta Secretase)
pdb|1W51|A Chain A, Bace (Beta Secretase) In Complex With A Nanomolar Non-
Peptidic Inhibitor
pdb|3RSV|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
(R)-3-(2-Amino-6-
O-Tolylquinolin-3-Yl)-N-((R)-2,
2-Dimethyltetrahydro-2h-Pyran-4-Yl)-2- Methylpropanamide
pdb|3RSX|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
6-(Thiophen-3- Yl)quinolin-2-Amine
pdb|3RTH|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
6-(2-(3,3- Dimethylbut-1-Ynyl)phenyl)quinolin-2-Amine
pdb|3RTM|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With 3-(2-
Aminoquinolin-3-Yl)-N-Cyclohexyl-N-Methylpropanamide
pdb|3RTN|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
3-(2-Amino-6-O-
Tolylquinolin-3-Yl)-N-Cyclohexylpropanamide
pdb|3RU1|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With 3-(2-
Aminoquinolin-3-Yl)-N-(Cyclohexylmethyl)propanamide
pdb|3RVI|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
2-((2-Amino-6-O-
Tolylquinolin-3-Yl)methyl)-N-
(Cyclohexylmethyl)pentanamide
pdb|4ACU|A Chain A, Aminoimidazoles As Bace-1 Inhibitors. X-Ray Crystal
Structure Of Beta Secretase Complexed With Compound 14
pdb|4ACX|A Chain A, Aminoimidazoles As Bace-1 Inhibitors. X-Ray Crystal
Structure Of Beta Secretase Complexed With Compound 23
pdb|4DH6|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
(2r)-N-((2s,3r)-
1-(Benzo[d][1,
3]dioxol-5-Yl)-3-Hydroxy-4-((S)-6'-Neopentyl-3',4'-
Dihydrospiro[cyclobutane-1,2'-Pyrano[2,
3-B]pyridine]-4'-Ylamino)
Butan-2-Yl)-2-Methoxypropanamide
pdb|4FRI|A Chain A, Crystal Structure Of Bace1 In Complex With Biarylspiro
Aminooxazoline 6
pdb|4FRJ|A Chain A, Crystal Structure Of Bace1 In Complex With Aminooxazoline
Xanthene 9l
pdb|4FRK|A Chain A, Crystal Structure Of Bace1 In Complex With Aminooxazoline
Xanthene 11a
pdb|4DI2|A Chain A, Crystal Structure Of Bace1 In Complex With
Hydroxyethylamine Inhibitor 37
pdb|4DI2|B Chain B, Crystal Structure Of Bace1 In Complex With
Hydroxyethylamine Inhibitor 37
pdb|4DI2|C Chain C, Crystal Structure Of Bace1 In Complex With
Hydroxyethylamine Inhibitor 37
pdb|4DUS|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
N-((2s,3r)-1-(4-
Fluorophenyl)-3-Hydroxy-4-((6'-Neopentyl-3',4'-
Dihydrospiro[cyclobutane-1,2'-Pyrano[2,
3-B]pyridin]-4'-Yl)amino) Butan-2-Yl)acetamide
pdb|4AZY|A Chain A, Design And Synthesis Of Bace1 Inhibitors With In Vivo
Brain Reduction Of Beta-Amyloid Peptides (Compound 10)
pdb|4B00|A Chain A, Design And Synthesis Of Bace1 Inhibitors With In Vivo
Brain Reduction Of Beta-Amyloid Peptides (Compound
(R)-41)
pdb|4B05|A Chain A, Preclinical Characterization Of Azd3839, A Novel Clinical
Candidate Bace1 Inhibitor For The Treatment Of Alzheimer
Disease
Length = 411
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 70/288 (24%), Positives = 115/288 (39%), Gaps = 54/288 (18%)
Query: 222 HAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVSVP--SL------LAKAGLI 273
H P +V+++ I + +++G+ +G++GL +++ P SL L K +
Sbjct: 108 HGPNVTVRAN--IAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHV 165
Query: 274 QNSFSI-----CFDENDS-------GSVFFG--DQGPATQQSTSFLPIGEK--YDAYFVG 317
N FS+ F N S GS+ G D T S + PI + Y+ V
Sbjct: 166 PNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTG-SLWYTPIRREWYYEVIIVR 224
Query: 318 VE--SYCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQG---N 372
VE + C + +++VDSG + LP +++ E VK K SS G
Sbjct: 225 VEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVF-EAAVKSIKAASSTEKFPDGFWLG 283
Query: 373 SWKYCYNASSEEMLKVPDMRLIFS---KNQSF--VVRNHIFSFPENEGFT------VFCL 421
C+ A + P + L NQSF + + P + T F +
Sbjct: 284 EQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAI 343
Query: 422 TVMSTDGDYGIIGQNFMMGHRIVFDRENLKLAWSHSKCEEVIDKSHVH 469
+ ST ++G M G +VFDR ++ ++ S C HVH
Sbjct: 344 SQSSTGT---VMGAVIMEGFYVVFDRARKRIGFAVSAC-------HVH 381
>pdb|1TZS|A Chain A, Crystal Structure Of An Activation Intermediate Of
Cathepsin E
Length = 351
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 110 HYTWIDIGTPNVSFLVALDAGSNLLWVP 137
++ I IG+P +F V D GS+ LWVP
Sbjct: 25 YFGTISIGSPPQNFTVIFDTGSSNLWVP 52
>pdb|3L58|A Chain A, Structure Of Bace Bound To Sch589432
pdb|3L58|B Chain B, Structure Of Bace Bound To Sch589432
pdb|3L59|A Chain A, Structure Of Bace Bound To Sch710413
pdb|3L59|B Chain B, Structure Of Bace Bound To Sch710413
pdb|3L5B|A Chain A, Structure Of Bace Bound To Sch713601
pdb|3L5B|B Chain B, Structure Of Bace Bound To Sch713601
pdb|3L5C|A Chain A, Structure Of Bace Bound To Sch723871
pdb|3L5C|B Chain B, Structure Of Bace Bound To Sch723871
pdb|3L5D|A Chain A, Structure Of Bace Bound To Sch723873
pdb|3L5D|B Chain B, Structure Of Bace Bound To Sch723873
pdb|3L5E|A Chain A, Structure Of Bace Bound To Sch736062
pdb|3L5E|B Chain B, Structure Of Bace Bound To Sch736062
pdb|3L5F|A Chain A, Structure Of Bace Bound To Sch736201
pdb|3L5F|B Chain B, Structure Of Bace Bound To Sch736201
pdb|4DJU|A Chain A, Structure Of Bace Bound To
2-Imino-3-Methyl-5,5-Diphenylimidazolidin- 4-One
pdb|4DJU|B Chain B, Structure Of Bace Bound To
2-Imino-3-Methyl-5,5-Diphenylimidazolidin- 4-One
pdb|4DJV|A Chain A, Structure Of Bace Bound To
2-Imino-5-(3'-Methoxy-[1,1'-Biphenyl]-3-
Yl)-3-Methyl-5-Phenylimidazolidin-4-One
pdb|4DJV|B Chain B, Structure Of Bace Bound To
2-Imino-5-(3'-Methoxy-[1,1'-Biphenyl]-3-
Yl)-3-Methyl-5-Phenylimidazolidin-4-One
pdb|4DJW|A Chain A, Structure Of Bace Bound To
2-Imino-3-Methyl-5-Phenyl-5-(3-(Pyridin-3-
Yl)phenyl)imidazolidin-4-One
pdb|4DJW|B Chain B, Structure Of Bace Bound To
2-Imino-3-Methyl-5-Phenyl-5-(3-(Pyridin-3-
Yl)phenyl)imidazolidin-4-One
pdb|4DJX|A Chain A, Structure Of Bace Bound To
5-(3-(5-Chloropyridin-3-Yl)phenyl)-5-
Cyclopropyl-2-Imino-3-Methylimidazolidin-4-One
pdb|4DJX|B Chain B, Structure Of Bace Bound To
5-(3-(5-Chloropyridin-3-Yl)phenyl)-5-
Cyclopropyl-2-Imino-3-Methylimidazolidin-4-One
pdb|4DJY|A Chain A, Structure Of Bace Bound To
(R)-5-Cyclopropyl-2-Imino-3-Methyl-5-(3-(5-
(Prop-1-Yn-1-Yl)pyridin-3-Yl)phenyl)imidazolidin-4-One
pdb|4DJY|B Chain B, Structure Of Bace Bound To
(R)-5-Cyclopropyl-2-Imino-3-Methyl-5-(3-(5-
(Prop-1-Yn-1-Yl)pyridin-3-Yl)phenyl)imidazolidin-4-One
pdb|4H1E|A Chain A, Structure Of Bace-1 Bound To
(7ar)-6-Benzoyl-7a-(4-(3-Cyanophenyl)
Thiophen-2-Yl)-3-Methyl-4-Oxohexahydro-1h-Pyrrolo[3,
4-D]pyrimidin- 2(3h)-Iminium
pdb|4H1E|B Chain B, Structure Of Bace-1 Bound To
(7ar)-6-Benzoyl-7a-(4-(3-Cyanophenyl)
Thiophen-2-Yl)-3-Methyl-4-Oxohexahydro-1h-Pyrrolo[3,
4-D]pyrimidin- 2(3h)-Iminium
pdb|4H3J|A Chain A, Structure Of Bace Bound To
2-Fluoro-5-(5-(2-Imino-3-Methyl-4-Oxo-6-
Phenyloctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl)thiophen-2-Yl) Benzonitrile
pdb|4H3J|B Chain B, Structure Of Bace Bound To
2-Fluoro-5-(5-(2-Imino-3-Methyl-4-Oxo-6-
Phenyloctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl)thiophen-2-Yl) Benzonitrile
pdb|4HA5|A Chain A, Structure Of Bace Bound To
(S)-3-(5-(2-Imino-1,4-Dimethyl-6-
Oxohexahydropyrimidin-4-Yl)thiophen-3-Yl)benzonitrile
pdb|4HA5|B Chain B, Structure Of Bace Bound To
(S)-3-(5-(2-Imino-1,4-Dimethyl-6-
Oxohexahydropyrimidin-4-Yl)thiophen-3-Yl)benzonitrile
pdb|4H3F|A Chain A, Structure Of Bace Bound To
3-(5-((7ar)-2-Imino-6-(6-Methoxypyridin-2-
Yl)-3-Methyl-4-Oxooctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl) Thiophen-3-Yl)benzonitrile
pdb|4H3F|B Chain B, Structure Of Bace Bound To
3-(5-((7ar)-2-Imino-6-(6-Methoxypyridin-2-
Yl)-3-Methyl-4-Oxooctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl) Thiophen-3-Yl)benzonitrile
pdb|4H3G|A Chain A, Structure Of Bace Bound To
2-((7ar)-7a-(4-(3-Cyanophenyl)thiophen-2-
Yl)-2-Imino-3-Methyl-4-Oxohexahydro-1h-Pyrrolo[3,
4-D]pyrimidin-6(2h)- Yl)nicotinonitrile
pdb|4H3G|B Chain B, Structure Of Bace Bound To
2-((7ar)-7a-(4-(3-Cyanophenyl)thiophen-2-
Yl)-2-Imino-3-Methyl-4-Oxohexahydro-1h-Pyrrolo[3,
4-D]pyrimidin-6(2h)- Yl)nicotinonitrile
pdb|4H3I|A Chain A, Structure Of Bace Bound To
3-(5-((7ar)-2-Imino-6-(3-Methoxypyridin-2-
Yl)-3-Methyl-4-Oxooctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl) Thiophen-3-Yl)benzonitrile
pdb|4H3I|B Chain B, Structure Of Bace Bound To
3-(5-((7ar)-2-Imino-6-(3-Methoxypyridin-2-
Yl)-3-Methyl-4-Oxooctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl) Thiophen-3-Yl)benzonitrile
Length = 414
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 67/285 (23%), Positives = 113/285 (39%), Gaps = 48/285 (16%)
Query: 222 HAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVSVP--SL------LAKAGLI 273
H P +V+++ I + +++G+ +G++GL +++ P SL L K +
Sbjct: 110 HGPNVTVRAN--IAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHV 167
Query: 274 QNSFSI-----CFDENDS-------GSVFFG--DQGPATQQSTSFLPIGEK--YDAYFVG 317
N FS+ F N S GS+ G D T S + PI + Y+ V
Sbjct: 168 PNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTG-SLWYTPIRREWYYEVIIVR 226
Query: 318 VE--SYCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQG---N 372
VE + C + +++VDSG + LP +++ E VK K SS G
Sbjct: 227 VEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVF-EAAVKSIKAASSTEKFPDGFWLG 285
Query: 373 SWKYCYNASSEEMLKVPDMRLIFS---KNQSFVV----RNHIFSFPENEGFTVFCLTVMS 425
C+ A + P + L NQSF + + ++ + C
Sbjct: 286 EQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAI 345
Query: 426 TDGDYG-IIGQNFMMGHRIVFDRENLKLAWSHSKCEEVIDKSHVH 469
+ G ++G M G +VFDR ++ ++ S C HVH
Sbjct: 346 SQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC-------HVH 383
>pdb|3VV6|A Chain A, Crystal Structure Of Beta Secetase In Complex With
2-Amino-3-Methyl-6- ((1s,
2r)-2-Phenylcyclopropyl)pyrimidin-4(3h)-One
pdb|3VV7|A Chain A, Crystal Structure Of Beta Secetase In Complex With
2-Amino-6-((1s,2r)-
2-(3'-Methoxybiphenyl-3-Yl)cyclopropyl)-3-
Methylpyrimidin-4(3h)-One
pdb|3VV8|A Chain A, Crystal Structure Of Beta Secetase In Complex With
2-Amino-3-Methyl-6-
((1s,
2r)-2-(3'-Methylbiphenyl-4-Yl)cyclopropyl)pyrimidin-
4(3h)-One
Length = 416
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 67/285 (23%), Positives = 113/285 (39%), Gaps = 48/285 (16%)
Query: 222 HAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVSVP--SL------LAKAGLI 273
H P +V+++ I + +++G+ +G++GL +++ P SL L K +
Sbjct: 112 HGPNVTVRAN--IAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHV 169
Query: 274 QNSFSI-----CFDENDS-------GSVFFG--DQGPATQQSTSFLPIGEK--YDAYFVG 317
N FS+ F N S GS+ G D T S + PI + Y+ V
Sbjct: 170 PNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTG-SLWYTPIRREWYYEVIIVR 228
Query: 318 VE--SYCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQG---N 372
VE + C + +++VDSG + LP +++ E VK K SS G
Sbjct: 229 VEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVF-EAAVKSIKAASSTEKFPDGFWLG 287
Query: 373 SWKYCYNASSEEMLKVPDMRLIFS---KNQSFVV----RNHIFSFPENEGFTVFCLTVMS 425
C+ A + P + L NQSF + + ++ + C
Sbjct: 288 EQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAI 347
Query: 426 TDGDYG-IIGQNFMMGHRIVFDRENLKLAWSHSKCEEVIDKSHVH 469
+ G ++G M G +VFDR ++ ++ S C HVH
Sbjct: 348 SQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC-------HVH 385
>pdb|3HVG|A Chain A, Structure Of Bace (Beta Secretase) In Complex With Ev0
pdb|3HVG|B Chain B, Structure Of Bace (Beta Secretase) In Complex With Ev0
pdb|3HVG|C Chain C, Structure Of Bace (Beta Secretase) In Complex With Ev0
pdb|3HW1|A Chain A, Structure Of Bace (Beta Secretase) In Complex With Ligand
Ev2
pdb|3HW1|B Chain B, Structure Of Bace (Beta Secretase) In Complex With Ligand
Ev2
pdb|3HW1|C Chain C, Structure Of Bace (Beta Secretase) In Complex With Ligand
Ev2
pdb|3MSJ|A Chain A, Structure Of Bace (Beta Secretase) In Complex With
Inhibitor
pdb|3MSJ|B Chain B, Structure Of Bace (Beta Secretase) In Complex With
Inhibitor
pdb|3MSJ|C Chain C, Structure Of Bace (Beta Secretase) In Complex With
Inhibitor
Length = 411
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 67/285 (23%), Positives = 113/285 (39%), Gaps = 48/285 (16%)
Query: 222 HAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVSVP--SL------LAKAGLI 273
H P +V+++ I + +++G+ +G++GL +++ P SL L K +
Sbjct: 108 HGPNVTVRAN--IAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHV 165
Query: 274 QNSFSI-----CFDENDS-------GSVFFG--DQGPATQQSTSFLPIGEK--YDAYFVG 317
N FS+ F N S GS+ G D T S + PI + Y+ V
Sbjct: 166 PNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTG-SLWYTPIRREWYYEVIIVR 224
Query: 318 VE--SYCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQG---N 372
VE + C + +++VDSG + LP +++ E VK K SS G
Sbjct: 225 VEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVF-EAAVKSIKAASSTEKFPDGFWLG 283
Query: 373 SWKYCYNASSEEMLKVPDMRLIFS---KNQSFVV----RNHIFSFPENEGFTVFCLTVMS 425
C+ A + P + L NQSF + + ++ + C
Sbjct: 284 EQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAI 343
Query: 426 TDGDYG-IIGQNFMMGHRIVFDRENLKLAWSHSKCEEVIDKSHVH 469
+ G ++G M G +VFDR ++ ++ S C HVH
Sbjct: 344 SQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC-------HVH 381
>pdb|2ZHR|A Chain A, Crystal Structure Of Bace1 In Complex With Om99-2 At Ph
5.0
pdb|2ZHR|B Chain B, Crystal Structure Of Bace1 In Complex With Om99-2 At Ph
5.0
pdb|2ZHS|A Chain A, Crystal Structure Of Bace1 At Ph 4.0
pdb|2ZHT|A Chain A, Crystal Structure Of Bace1 At Ph 4.5
pdb|2ZHU|A Chain A, Crystal Structure Of Bace1 At Ph 5.0
pdb|2ZHV|A Chain A, Crystal Structure Of Bace1 At Ph 7.0
Length = 411
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 67/285 (23%), Positives = 113/285 (39%), Gaps = 48/285 (16%)
Query: 222 HAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVSVP--SL------LAKAGLI 273
H P +V+++ I + +++G+ +G++GL +++ P SL L K +
Sbjct: 107 HGPNVTVRAN--IAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHV 164
Query: 274 QNSFSI-----CFDENDS-------GSVFFG--DQGPATQQSTSFLPIGEK--YDAYFVG 317
N FS+ F N S GS+ G D T S + PI + Y+ V
Sbjct: 165 PNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTG-SLWYTPIRREWYYEVIIVR 223
Query: 318 VE--SYCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQG---N 372
VE + C + +++VDSG + LP +++ E VK K SS G
Sbjct: 224 VEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVF-EAAVKSIKAASSTEKFPDGFWLG 282
Query: 373 SWKYCYNASSEEMLKVPDMRLIFS---KNQSFVV----RNHIFSFPENEGFTVFCLTVMS 425
C+ A + P + L NQSF + + ++ + C
Sbjct: 283 EQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAI 342
Query: 426 TDGDYG-IIGQNFMMGHRIVFDRENLKLAWSHSKCEEVIDKSHVH 469
+ G ++G M G +VFDR ++ ++ S C HVH
Sbjct: 343 SQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC-------HVH 380
>pdb|3QRV|A Chain A, Crystal Structure Of Plasmepsin I (Pmi) From Plasmodium
Falciparum
pdb|3QRV|B Chain B, Crystal Structure Of Plasmepsin I (Pmi) From Plasmodium
Falciparum
pdb|3QS1|A Chain A, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
(Pmi) From Plasmodium Falciparum
pdb|3QS1|B Chain B, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
(Pmi) From Plasmodium Falciparum
pdb|3QS1|C Chain C, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
(Pmi) From Plasmodium Falciparum
pdb|3QS1|D Chain D, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
(Pmi) From Plasmodium Falciparum
Length = 336
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 51/228 (22%), Positives = 91/228 (39%), Gaps = 42/228 (18%)
Query: 251 DGVMGLGLGDVSVPSLLAKAGLIQNSFSICFDENDSGSVFFGDQGPATQQSTSFLPIGEK 310
DG++GLG D+S+ S+ ++N +N F P + +L IG
Sbjct: 128 DGIVGLGWKDLSIGSVDPVVVELKN-------QNKIEQAVFTFYLPFDDKHKGYLTIGGI 180
Query: 311 YDAYFVGVESYCIGN-------------SCLTQSGFQALVDSGASFTFLPTEIYAEVVVK 357
D ++ G +Y N LT A+VDSG S PTE + K
Sbjct: 181 EDRFYEGQLTYEKLNHDLYWQVDLDLHFGNLTVEKATAIVDSGTSSITAPTEF----LNK 236
Query: 358 FDKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMRL-----IFSKNQSFVVRNHIFSFPE 412
F + + +I C N K+P + +++ + ++ IF F
Sbjct: 237 FFEGLDVVKIPFLPLYITTCNNP------KLPTLEFRSATNVYTLEPEYYLQ-QIFDF-- 287
Query: 413 NEGFTVFCLTVMSTDGDYG--IIGQNFMMGHRIVFDRENLKLAWSHSK 458
G ++ ++++ D + I+G FM + VFD +N + ++ +K
Sbjct: 288 --GISLCMVSIIPVDLNKNTFILGDPFMRKYFTVFDYDNHTVGFALAK 333
>pdb|3IXK|A Chain A, Potent Beta-Secretase 1 Inhibitor
pdb|3IXK|B Chain B, Potent Beta-Secretase 1 Inhibitor
pdb|3IXK|C Chain C, Potent Beta-Secretase 1 Inhibitor
pdb|3KYR|A Chain A, Bace-1 In Complex With A Norstatine Type Inhibitor
pdb|3KYR|B Chain B, Bace-1 In Complex With A Norstatine Type Inhibitor
pdb|3KYR|C Chain C, Bace-1 In Complex With A Norstatine Type Inhibitor
Length = 405
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 67/285 (23%), Positives = 113/285 (39%), Gaps = 48/285 (16%)
Query: 222 HAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVSVP--SL------LAKAGLI 273
H P +V+++ I + +++G+ +G++GL +++ P SL L K +
Sbjct: 109 HGPNVTVRAN--IAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHV 166
Query: 274 QNSFSI-----CFDENDS-------GSVFFG--DQGPATQQSTSFLPIGEK--YDAYFVG 317
N FS+ F N S GS+ G D T S + PI + Y+ V
Sbjct: 167 PNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTG-SLWYTPIRREWYYEVIIVR 225
Query: 318 VE--SYCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQG---N 372
VE + C + +++VDSG + LP +++ E VK K SS G
Sbjct: 226 VEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVF-EAAVKSIKAASSTEKFPDGFWLG 284
Query: 373 SWKYCYNASSEEMLKVPDMRLIFS---KNQSFVV----RNHIFSFPENEGFTVFCLTVMS 425
C+ A + P + L NQSF + + ++ + C
Sbjct: 285 EQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAI 344
Query: 426 TDGDYG-IIGQNFMMGHRIVFDRENLKLAWSHSKCEEVIDKSHVH 469
+ G ++G M G +VFDR ++ ++ S C HVH
Sbjct: 345 SQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC-------HVH 382
>pdb|3CKP|A Chain A, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKP|B Chain B, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKP|C Chain C, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKR|A Chain A, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKR|B Chain B, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKR|C Chain C, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|4FSL|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Db-Mut) Complex With N-(N-(4-
Acetamido-3-Chloro-5-Methylbenzyl) Carbamimidoyl)-3-(4-
Methoxyphenyl)-5-Methyl-4-Isothiazolecarboxamide
pdb|4FSL|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Db-Mut) Complex With N-(N-(4-
Acetamido-3-Chloro-5-Methylbenzyl) Carbamimidoyl)-3-(4-
Methoxyphenyl)-5-Methyl-4-Isothiazolecarboxamide
pdb|4FSL|D Chain D, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Db-Mut) Complex With N-(N-(4-
Acetamido-3-Chloro-5-Methylbenzyl) Carbamimidoyl)-3-(4-
Methoxyphenyl)-5-Methyl-4-Isothiazolecarboxamide
pdb|4FSL|E Chain E, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Db-Mut) Complex With N-(N-(4-
Acetamido-3-Chloro-5-Methylbenzyl) Carbamimidoyl)-3-(4-
Methoxyphenyl)-5-Methyl-4-Isothiazolecarboxamide
Length = 412
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 67/285 (23%), Positives = 113/285 (39%), Gaps = 48/285 (16%)
Query: 222 HAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVSVP--SL------LAKAGLI 273
H P +V+++ I + +++G+ +G++GL +++ P SL L K +
Sbjct: 108 HGPNVTVRAN--IAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHV 165
Query: 274 QNSFSI-----CFDENDS-------GSVFFG--DQGPATQQSTSFLPIGEK--YDAYFVG 317
N FS+ F N S GS+ G D T S + PI + Y+ V
Sbjct: 166 PNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTG-SLWYTPIRREWYYEVIIVR 224
Query: 318 VE--SYCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQG---N 372
VE + C + +++VDSG + LP +++ E VK K SS G
Sbjct: 225 VEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVF-EAAVKSIKAASSTEKFPDGFWLG 283
Query: 373 SWKYCYNASSEEMLKVPDMRLIFS---KNQSFVV----RNHIFSFPENEGFTVFCLTVMS 425
C+ A + P + L NQSF + + ++ + C
Sbjct: 284 EQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAI 343
Query: 426 TDGDYG-IIGQNFMMGHRIVFDRENLKLAWSHSKCEEVIDKSHVH 469
+ G ++G M G +VFDR ++ ++ S C HVH
Sbjct: 344 SQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC-------HVH 381
>pdb|2QU2|A Chain A, Bace1 With Compound 1
pdb|2QU3|A Chain A, Bace1 With Compound 2
pdb|2ZDZ|A Chain A, X-Ray Structure Of Bace-1 In Complex With Compound 3.B.10
pdb|2ZE1|A Chain A, X-Ray Structure Of Bace-1 In Complex With Compound 6g
pdb|3IGB|A Chain A, Bace-1 With Compound 3
pdb|3IN3|A Chain A, Bace1 With Compound 30
pdb|3IN4|A Chain A, Bace1 With Compound 38
pdb|3IND|A Chain A, Bace1 With The Aminohydantoin Compound 29
pdb|3INE|A Chain A, Bace1 With The Aminohydantoin Compound S-34
pdb|3INF|A Chain A, Bace1 With The Aminohydantoin Compound 37
pdb|3INH|A Chain A, Bace1 With The Aminohydantoin Compound R-58
pdb|3LHG|A Chain A, Bace1 In Complex With The Aminohydantoin Compound 4g
pdb|3L38|A Chain A, Bace1 In Complex With The Aminopyridine Compound 44
pdb|3L3A|A Chain A, Bace-1 With The Aminopyridine Compound 32
pdb|3OOZ|A Chain A, Bace1 In Complex With The Aminohydantoin Compound 102
pdb|3S7L|A Chain A, Pyrazolyl And Thienyl Aminohydantoins As Potent Bace1
Inhibitors
pdb|3S7M|A Chain A, Pyrazolyl And Thienyl Aminohydantoins As Potent Bace1
Inhibitors
Length = 415
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 67/285 (23%), Positives = 113/285 (39%), Gaps = 48/285 (16%)
Query: 222 HAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVSVP--SL------LAKAGLI 273
H P +V+++ I + +++G+ +G++GL +++ P SL L K +
Sbjct: 105 HGPNVTVRAN--IAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHV 162
Query: 274 QNSFSI-----CFDENDS-------GSVFFG--DQGPATQQSTSFLPIGEK--YDAYFVG 317
N FS+ F N S GS+ G D T S + PI + Y+ V
Sbjct: 163 PNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTG-SLWYTPIRREWYYEVIIVR 221
Query: 318 VE--SYCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQG---N 372
VE + C + +++VDSG + LP +++ E VK K SS G
Sbjct: 222 VEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVF-EAAVKSIKAASSTEKFPDGFWLG 280
Query: 373 SWKYCYNASSEEMLKVPDMRLIFS---KNQSFVV----RNHIFSFPENEGFTVFCLTVMS 425
C+ A + P + L NQSF + + ++ + C
Sbjct: 281 EQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAI 340
Query: 426 TDGDYG-IIGQNFMMGHRIVFDRENLKLAWSHSKCEEVIDKSHVH 469
+ G ++G M G +VFDR ++ ++ S C HVH
Sbjct: 341 SQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC-------HVH 378
>pdb|3QI1|A Chain A, Design And Synthesis Of Hydroxyethylamine (Hea) Bace-1
Inhibitors: Prime Side Chromane-Containing Inhibitors
Length = 408
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 67/285 (23%), Positives = 113/285 (39%), Gaps = 48/285 (16%)
Query: 222 HAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVSVP--SL------LAKAGLI 273
H P +V+++ I + +++G+ +G++GL +++ P SL L K +
Sbjct: 105 HGPNVTVRAN--IAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHV 162
Query: 274 QNSFSI-----CFDENDS-------GSVFFG--DQGPATQQSTSFLPIGEK--YDAYFVG 317
N FS+ F N S GS+ G D T S + PI + Y+ V
Sbjct: 163 PNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTG-SLWYTPIRREWYYEVIIVR 221
Query: 318 VE--SYCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQG---N 372
VE + C + +++VDSG + LP +++ E VK K SS G
Sbjct: 222 VEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVF-EAAVKSIKAASSTEKFPDGFWLG 280
Query: 373 SWKYCYNASSEEMLKVPDMRLIFS---KNQSFVV----RNHIFSFPENEGFTVFCLTVMS 425
C+ A + P + L NQSF + + ++ + C
Sbjct: 281 EQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAI 340
Query: 426 TDGDYG-IIGQNFMMGHRIVFDRENLKLAWSHSKCEEVIDKSHVH 469
+ G ++G M G +VFDR ++ ++ S C HVH
Sbjct: 341 SQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC-------HVH 378
>pdb|2ZJN|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-[1-(5-Chloro-2-Isopropoxy-3-Methoxy-Benzyl)-
Piperidin-4-Yl]-2-(2-Methyl-4-Sulfamoyl-Phenoxy)-
Acetamide
pdb|3H0B|A Chain A, Discovery Of Aminoheterocycles As A Novel Beta-Secretase
Inhibitor Class
pdb|3H0B|B Chain B, Discovery Of Aminoheterocycles As A Novel Beta-Secretase
Inhibitor Class
pdb|3H0B|C Chain C, Discovery Of Aminoheterocycles As A Novel Beta-Secretase
Inhibitor Class
Length = 405
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 67/285 (23%), Positives = 113/285 (39%), Gaps = 48/285 (16%)
Query: 222 HAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVSVP--SL------LAKAGLI 273
H P +V+++ I + +++G+ +G++GL +++ P SL L K +
Sbjct: 109 HGPNVTVRAN--IAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHV 166
Query: 274 QNSFSI-----CFDENDS-------GSVFFG--DQGPATQQSTSFLPIGEK--YDAYFVG 317
N FS+ F N S GS+ G D T S + PI + Y+ V
Sbjct: 167 PNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTG-SLWYTPIRREWYYEVIIVR 225
Query: 318 VE--SYCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQG---N 372
VE + C + +++VDSG + LP +++ E VK K SS G
Sbjct: 226 VEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVF-EAAVKSIKAASSTEKFPDGFWLG 284
Query: 373 SWKYCYNASSEEMLKVPDMRLIFS---KNQSFVV----RNHIFSFPENEGFTVFCLTVMS 425
C+ A + P + L NQSF + + ++ + C
Sbjct: 285 EQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAI 344
Query: 426 TDGDYG-IIGQNFMMGHRIVFDRENLKLAWSHSKCEEVIDKSHVH 469
+ G ++G M G +VFDR ++ ++ S C HVH
Sbjct: 345 SQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC-------HVH 382
>pdb|2FDP|A Chain A, Crystal Structure Of Beta-Secretase Complexed With An
Amino- Ethylene Inhibitor
pdb|2FDP|B Chain B, Crystal Structure Of Beta-Secretase Complexed With An
Amino- Ethylene Inhibitor
pdb|2FDP|C Chain C, Crystal Structure Of Beta-Secretase Complexed With An
Amino- Ethylene Inhibitor
pdb|3IXJ|A Chain A, Crystal Structure Of Beta-Secretase 1 In Complex With
Selective Beta-Secretase 1 Inhibitor
pdb|3IXJ|B Chain B, Crystal Structure Of Beta-Secretase 1 In Complex With
Selective Beta-Secretase 1 Inhibitor
pdb|3IXJ|C Chain C, Crystal Structure Of Beta-Secretase 1 In Complex With
Selective Beta-Secretase 1 Inhibitor
pdb|4GID|A Chain A, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|4GID|B Chain B, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|4GID|C Chain C, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|4GID|D Chain D, Structure Of Beta-Secretase Complexed With Inhibitor
Length = 388
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 68/285 (23%), Positives = 114/285 (40%), Gaps = 48/285 (16%)
Query: 222 HAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVSVP--SL------LAKAGLI 273
H P +V+++ I + +++G+ +G++GL +++ P SL L K +
Sbjct: 92 HGPNVTVRAN--IAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHV 149
Query: 274 QNSFSI--C---FDENDS-------GSVFFG--DQGPATQQSTSFLPIGEK--YDAYFVG 317
N FS+ C F N S GS+ G D T S + PI + Y+ V
Sbjct: 150 PNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTG-SLWYTPIRREWYYEVIIVR 208
Query: 318 VE--SYCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQG---N 372
VE + C + +++VDSG + LP +++ E VK K SS G
Sbjct: 209 VEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVF-EAAVKSIKAASSTEKFPDGFWLG 267
Query: 373 SWKYCYNASSEEMLKVPDMRLIFS---KNQSFVV----RNHIFSFPENEGFTVFCLTVMS 425
C+ A + P + L NQSF + + ++ + C
Sbjct: 268 EQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAI 327
Query: 426 TDGDYG-IIGQNFMMGHRIVFDRENLKLAWSHSKCEEVIDKSHVH 469
+ G ++G M G +VFDR ++ ++ S C HVH
Sbjct: 328 SQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC-------HVH 365
>pdb|2ZJK|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic
Acid(3-Mercapto-Propyl)-Amide
pdb|2ZJK|B Chain B, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic
Acid(3-Mercapto-Propyl)-Amide
pdb|2ZJK|C Chain C, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic
Acid(3-Mercapto-Propyl)-Amide
Length = 405
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 68/285 (23%), Positives = 114/285 (40%), Gaps = 48/285 (16%)
Query: 222 HAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVSVP--SL------LAKAGLI 273
H P +V+++ I + +++G+ +G++GL +++ P SL L K +
Sbjct: 109 HGPNVTVRAN--IAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHV 166
Query: 274 QNSFSI--C---FDENDS-------GSVFFG--DQGPATQQSTSFLPIGEK--YDAYFVG 317
N FS+ C F N S GS+ G D T S + PI + Y+ V
Sbjct: 167 PNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTG-SLWYTPIRREWYYEVIIVR 225
Query: 318 VE--SYCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQG---N 372
VE + C + +++VDSG + LP +++ E VK K SS G
Sbjct: 226 VEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVF-EAAVKSIKAASSTEKFPDGFWLG 284
Query: 373 SWKYCYNASSEEMLKVPDMRLIFS---KNQSFVV----RNHIFSFPENEGFTVFCLTVMS 425
C+ A + P + L NQSF + + ++ + C
Sbjct: 285 EQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAI 344
Query: 426 TDGDYG-IIGQNFMMGHRIVFDRENLKLAWSHSKCEEVIDKSHVH 469
+ G ++G M G +VFDR ++ ++ S C HVH
Sbjct: 345 SQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC-------HVH 382
>pdb|1TQF|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2B8L|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2B8V|A Chain A, Crystal Structure Of Human Beta-Secretase Complexed With
L- L000430,469
pdb|2IRZ|A Chain A, Crystal Structure Of Human Beta-Secretase Complexed With
Inhibitor
pdb|2IS0|A Chain A, Crystal Structure Of Human Beta-Secretase Complexed With
Inhibitor
pdb|2PH6|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2OAH|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2P8H|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2NTR|A Chain A, Crystal Structure Of Human Bace-1 Bound To Inhibitor
pdb|2PH8|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2QZK|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
I21
pdb|2ZJM|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-[1-(5-Chloro-2-Isopropoxy-3-Methoxy-Benzyl)-
Piperidin-4-Yl]-2-(4-Sulfamoyl-Phenoxy)-Acetamide
pdb|3FKT|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Spiropiperdine Iminohydantoin Inhibitor
Length = 405
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 67/285 (23%), Positives = 113/285 (39%), Gaps = 48/285 (16%)
Query: 222 HAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVSVP--SL------LAKAGLI 273
H P +V+++ I + +++G+ +G++GL +++ P SL L K +
Sbjct: 109 HGPNVTVRAN--IAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHV 166
Query: 274 QNSFSI-----CFDENDS-------GSVFFG--DQGPATQQSTSFLPIGEK--YDAYFVG 317
N FS+ F N S GS+ G D T S + PI + Y+ V
Sbjct: 167 PNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTG-SLWYTPIRREWYYEVIIVR 225
Query: 318 VE--SYCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQG---N 372
VE + C + +++VDSG + LP +++ E VK K SS G
Sbjct: 226 VEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVF-EAAVKSIKAASSTEKFPDGFWLG 284
Query: 373 SWKYCYNASSEEMLKVPDMRLIFS---KNQSFVV----RNHIFSFPENEGFTVFCLTVMS 425
C+ A + P + L NQSF + + ++ + C
Sbjct: 285 EQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAI 344
Query: 426 TDGDYG-IIGQNFMMGHRIVFDRENLKLAWSHSKCEEVIDKSHVH 469
+ G ++G M G +VFDR ++ ++ S C HVH
Sbjct: 345 SQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC-------HVH 382
>pdb|4EWO|A Chain A, Design And Synthesis Of Potent Hydroxyethylamine (Hea)
Bace-1 Inhibitors
pdb|4EXG|A Chain A, Design And Synthesis Of Potent Hydroxyethylamine (Hea)
Bace-1 Inhibitors
Length = 386
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 68/285 (23%), Positives = 114/285 (40%), Gaps = 48/285 (16%)
Query: 222 HAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVSVP--SL------LAKAGLI 273
H P +V+++ I + +++G+ +G++GL +++ P SL L K +
Sbjct: 90 HGPNVTVRAN--IAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHV 147
Query: 274 QNSFSI--C---FDENDS-------GSVFFG--DQGPATQQSTSFLPIGEK--YDAYFVG 317
N FS+ C F N S GS+ G D T S + PI + Y+ V
Sbjct: 148 PNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTG-SLWYTPIRREWYYEVIIVR 206
Query: 318 VE--SYCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQG---N 372
VE + C + +++VDSG + LP +++ E VK K SS G
Sbjct: 207 VEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVF-EAAVKSIKAASSTEKFPDGFWLG 265
Query: 373 SWKYCYNASSEEMLKVPDMRLIFS---KNQSFVV----RNHIFSFPENEGFTVFCLTVMS 425
C+ A + P + L NQSF + + ++ + C
Sbjct: 266 EQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAI 325
Query: 426 TDGDYG-IIGQNFMMGHRIVFDRENLKLAWSHSKCEEVIDKSHVH 469
+ G ++G M G +VFDR ++ ++ S C HVH
Sbjct: 326 SQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC-------HVH 363
>pdb|2QZL|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Ixs
Length = 411
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 67/285 (23%), Positives = 113/285 (39%), Gaps = 48/285 (16%)
Query: 222 HAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVSVP--SL------LAKAGLI 273
H P +V+++ I + +++G+ +G++GL +++ P SL L K +
Sbjct: 115 HGPNVTVRAN--IAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHV 172
Query: 274 QNSFSI-----CFDENDS-------GSVFFG--DQGPATQQSTSFLPIGEK--YDAYFVG 317
N FS+ F N S GS+ G D T S + PI + Y+ V
Sbjct: 173 PNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTG-SLWYTPIRREWYYEVIIVR 231
Query: 318 VE--SYCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQG---N 372
VE + C + +++VDSG + LP +++ E VK K SS G
Sbjct: 232 VEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVF-EAAVKSIKAASSTEKFPDGFWLG 290
Query: 373 SWKYCYNASSEEMLKVPDMRLIFS---KNQSFVV----RNHIFSFPENEGFTVFCLTVMS 425
C+ A + P + L NQSF + + ++ + C
Sbjct: 291 EQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAI 350
Query: 426 TDGDYG-IIGQNFMMGHRIVFDRENLKLAWSHSKCEEVIDKSHVH 469
+ G ++G M G +VFDR ++ ++ S C HVH
Sbjct: 351 SQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC-------HVH 388
>pdb|3UDH|A Chain A, Crystal Structure Of Bace With Compound 1
pdb|3UDJ|A Chain A, Crystal Structure Of Bace With Compound 5
pdb|3UDK|A Chain A, Crystal Structure Of Bace With Compound 6
pdb|3UDM|A Chain A, Crystal Structure Of Bace With Compound 8
pdb|3UDN|A Chain A, Crystal Structure Of Bace With Compound 9
pdb|3UDP|A Chain A, Crystal Structure Of Bace With Compound 12
pdb|3UDQ|A Chain A, Crystal Structure Of Bace With Compound 13
pdb|3UDR|A Chain A, Crystal Structure Of Bace With Compound 14
pdb|3UDY|A Chain A, Crystal Structure Of Bace With Compound 11
pdb|4FM7|A Chain A, Crystal Structure Of Bace With Compound 14g
pdb|4FM8|A Chain A, Crystal Structure Of Bace With Compound 12a
Length = 404
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 67/285 (23%), Positives = 113/285 (39%), Gaps = 48/285 (16%)
Query: 222 HAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVSVP--SL------LAKAGLI 273
H P +V+++ I + +++G+ +G++GL +++ P SL L K +
Sbjct: 93 HGPNVTVRAN--IAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHV 150
Query: 274 QNSFSI-----CFDENDS-------GSVFFG--DQGPATQQSTSFLPIGEK--YDAYFVG 317
N FS+ F N S GS+ G D T S + PI + Y+ V
Sbjct: 151 PNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTG-SLWYTPIRREWYYEVIIVR 209
Query: 318 VE--SYCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQG---N 372
VE + C + +++VDSG + LP +++ E VK K SS G
Sbjct: 210 VEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVF-EAAVKSIKAASSTEKFPDGFWLG 268
Query: 373 SWKYCYNASSEEMLKVPDMRLIFS---KNQSFVV----RNHIFSFPENEGFTVFCLTVMS 425
C+ A + P + L NQSF + + ++ + C
Sbjct: 269 EQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAI 328
Query: 426 TDGDYG-IIGQNFMMGHRIVFDRENLKLAWSHSKCEEVIDKSHVH 469
+ G ++G M G +VFDR ++ ++ S C HVH
Sbjct: 329 SQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC-------HVH 366
>pdb|2HM1|A Chain A, Crystal Structure Of Human Beta-Secretase (Bace) In The
Presence Of An Inhibitor (2)
pdb|2IQG|A Chain A, Crystal Structure Of Hydroxyethyl Secondary Amine-Based
Peptidomimetic Inhibitor Of Human Beta-Secretase (Bace)
pdb|3IVH|A Chain A, Design And Synthesis Of Potent Bace-1 Inhibitors With
Cellular Activity: Structure-Activity Relationship Of P1
Substituents
pdb|3IVI|A Chain A, Design And Synthesis Of Potent Bace-1 Inhibitors With
Cellular Activity: Structure-Activity Relationship Of P1
Substituents
pdb|3IVI|B Chain B, Design And Synthesis Of Potent Bace-1 Inhibitors With
Cellular Activity: Structure-Activity Relationship Of P1
Substituents
pdb|3IVI|C Chain C, Design And Synthesis Of Potent Bace-1 Inhibitors With
Cellular Activity: Structure-Activity Relationship Of P1
Substituents
pdb|3NSH|A Chain A, Bace-1 In Complex With Eln475957
pdb|3NSH|B Chain B, Bace-1 In Complex With Eln475957
pdb|3NSH|C Chain C, Bace-1 In Complex With Eln475957
pdb|3N4L|A Chain A, Bace-1 In Complex With Eln380842
pdb|3N4L|B Chain B, Bace-1 In Complex With Eln380842
pdb|3N4L|C Chain C, Bace-1 In Complex With Eln380842
Length = 406
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 68/285 (23%), Positives = 114/285 (40%), Gaps = 48/285 (16%)
Query: 222 HAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVSVP--SL------LAKAGLI 273
H P +V+++ I + +++G+ +G++GL +++ P SL L K +
Sbjct: 95 HGPNVTVRAN--IAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHV 152
Query: 274 QNSFSI--C---FDENDS-------GSVFFG--DQGPATQQSTSFLPIGEK--YDAYFVG 317
N FS+ C F N S GS+ G D T S + PI + Y+ V
Sbjct: 153 PNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTG-SLWYTPIRREWYYEVIIVR 211
Query: 318 VE--SYCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQG---N 372
VE + C + +++VDSG + LP +++ E VK K SS G
Sbjct: 212 VEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVF-EAAVKSIKAASSTEKFPDGFWLG 270
Query: 373 SWKYCYNASSEEMLKVPDMRLIFS---KNQSFVV----RNHIFSFPENEGFTVFCLTVMS 425
C+ A + P + L NQSF + + ++ + C
Sbjct: 271 EQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAI 330
Query: 426 TDGDYG-IIGQNFMMGHRIVFDRENLKLAWSHSKCEEVIDKSHVH 469
+ G ++G M G +VFDR ++ ++ S C HVH
Sbjct: 331 SQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC-------HVH 368
>pdb|3DM6|A Chain A, Beta-Secretase 1 Complexed With Statine-Based Inhibitor
pdb|3DM6|B Chain B, Beta-Secretase 1 Complexed With Statine-Based Inhibitor
pdb|3DM6|C Chain C, Beta-Secretase 1 Complexed With Statine-Based Inhibitor
pdb|3I25|A Chain A, Potent Beta-Secretase 1 Hydroxyethylene Inhibitor
pdb|3I25|B Chain B, Potent Beta-Secretase 1 Hydroxyethylene Inhibitor
pdb|3I25|C Chain C, Potent Beta-Secretase 1 Hydroxyethylene Inhibitor
Length = 406
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 67/285 (23%), Positives = 113/285 (39%), Gaps = 48/285 (16%)
Query: 222 HAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVSVP--SL------LAKAGLI 273
H P +V+++ I + +++G+ +G++GL +++ P SL L K +
Sbjct: 110 HGPNVTVRAN--IAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHV 167
Query: 274 QNSFSI-----CFDENDS-------GSVFFG--DQGPATQQSTSFLPIGEK--YDAYFVG 317
N FS+ F N S GS+ G D T S + PI + Y+ V
Sbjct: 168 PNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTG-SLWYTPIRREWYYEVIIVR 226
Query: 318 VE--SYCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQG---N 372
VE + C + +++VDSG + LP +++ E VK K SS G
Sbjct: 227 VEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVF-EAAVKSIKAASSTEKFPDGFWLG 285
Query: 373 SWKYCYNASSEEMLKVPDMRLIFS---KNQSFVV----RNHIFSFPENEGFTVFCLTVMS 425
C+ A + P + L NQSF + + ++ + C
Sbjct: 286 EQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAI 345
Query: 426 TDGDYG-IIGQNFMMGHRIVFDRENLKLAWSHSKCEEVIDKSHVH 469
+ G ++G M G +VFDR ++ ++ S C HVH
Sbjct: 346 SQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC-------HVH 383
>pdb|1YM4|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Amk640
pdb|1YM4|B Chain B, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Amk640
pdb|1YM4|C Chain C, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Amk640
pdb|3K5D|A Chain A, Crystal Structure Of Bace-1 In Complex With Ahm178
pdb|3K5D|B Chain B, Crystal Structure Of Bace-1 In Complex With Ahm178
pdb|3K5D|C Chain C, Crystal Structure Of Bace-1 In Complex With Ahm178
pdb|3MSK|A Chain A, Fragment Based Discovery And Optimisation Of Bace-1
Inhibitors
pdb|3MSL|A Chain A, Fragment Based Discovery And Optimisation Of Bace-1
Inhibitors
pdb|3S2O|A Chain A, Fragment Based Discovery And Optimisation Of Bace-1
Inhibitors
pdb|4D85|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bvi151
Length = 408
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 67/285 (23%), Positives = 113/285 (39%), Gaps = 48/285 (16%)
Query: 222 HAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVSVP--SL------LAKAGLI 273
H P +V+++ I + +++G+ +G++GL +++ P SL L K +
Sbjct: 105 HGPNVTVRAN--IAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHV 162
Query: 274 QNSFSI-----CFDENDS-------GSVFFG--DQGPATQQSTSFLPIGEK--YDAYFVG 317
N FS+ F N S GS+ G D T S + PI + Y+ V
Sbjct: 163 PNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTG-SLWYTPIRREWYYEVIIVR 221
Query: 318 VE--SYCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQG---N 372
VE + C + +++VDSG + LP +++ E VK K SS G
Sbjct: 222 VEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVF-EAAVKSIKAASSTEKFPDGFWLG 280
Query: 373 SWKYCYNASSEEMLKVPDMRLIFS---KNQSFVV----RNHIFSFPENEGFTVFCLTVMS 425
C+ A + P + L NQSF + + ++ + C
Sbjct: 281 EQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAI 340
Query: 426 TDGDYG-IIGQNFMMGHRIVFDRENLKLAWSHSKCEEVIDKSHVH 469
+ G ++G M G +VFDR ++ ++ S C HVH
Sbjct: 341 SQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC-------HVH 378
>pdb|1YM2|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Aur200
pdb|1YM2|B Chain B, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Aur200
pdb|1YM2|C Chain C, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Aur200
pdb|2F3E|A Chain A, Crystal Structure Of The Bace Complex With Axq093, A
Macrocyclic Inhibitor
pdb|2F3E|B Chain B, Crystal Structure Of The Bace Complex With Axq093, A
Macrocyclic Inhibitor
pdb|2F3E|C Chain C, Crystal Structure Of The Bace Complex With Axq093, A
Macrocyclic Inhibitor
pdb|2F3F|A Chain A, Crystal Structure Of The Bace Complex With Bdf488, A
Macrocyclic Inhibitor
pdb|2F3F|B Chain B, Crystal Structure Of The Bace Complex With Bdf488, A
Macrocyclic Inhibitor
pdb|2F3F|C Chain C, Crystal Structure Of The Bace Complex With Bdf488, A
Macrocyclic Inhibitor
pdb|3DUY|A Chain A, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Afj144
pdb|3DUY|B Chain B, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Afj144
pdb|3DUY|C Chain C, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Afj144
pdb|3DV1|A Chain A, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Arv999
pdb|3DV1|B Chain B, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Arv999
pdb|3DV1|C Chain C, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Arv999
pdb|3DV5|A Chain A, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Bav544
pdb|3DV5|B Chain B, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Bav544
pdb|3DV5|C Chain C, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Bav544
pdb|3K5C|A Chain A, Human Bace-1 Complex With Nb-216
pdb|3K5C|B Chain B, Human Bace-1 Complex With Nb-216
pdb|3K5C|C Chain C, Human Bace-1 Complex With Nb-216
pdb|3K5F|A Chain A, Human Bace-1 Complex With Ayh011
pdb|3K5F|B Chain B, Human Bace-1 Complex With Ayh011
pdb|3K5F|C Chain C, Human Bace-1 Complex With Ayh011
pdb|3K5G|A Chain A, Human Bace-1 Complex With Bjc060
pdb|3K5G|B Chain B, Human Bace-1 Complex With Bjc060
pdb|3K5G|C Chain C, Human Bace-1 Complex With Bjc060
pdb|3PI5|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Bfg356
pdb|3PI5|B Chain B, Crystal Structure Of Human Beta Secretase In Complex With
Bfg356
pdb|3PI5|C Chain C, Crystal Structure Of Human Beta Secretase In Complex With
Bfg356
pdb|3QBH|A Chain A, Structure Based Design, Synthesis And Sar Of Cyclic
Hydroxyethylamine (Hea) Bace-1 Inhibitors
pdb|3QBH|B Chain B, Structure Based Design, Synthesis And Sar Of Cyclic
Hydroxyethylamine (Hea) Bace-1 Inhibitors
pdb|3QBH|C Chain C, Structure Based Design, Synthesis And Sar Of Cyclic
Hydroxyethylamine (Hea) Bace-1 Inhibitors
pdb|3VEU|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Avi326
pdb|3VF3|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bqq711
pdb|3VG1|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bur436, Derived From A Soaking Experiment
pdb|4D83|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bur436, Derived From A Co-Crystallization Experiment
pdb|4D83|B Chain B, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bur436, Derived From A Co-Crystallization Experiment
pdb|4D83|C Chain C, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bur436, Derived From A Co-Crystallization Experiment
pdb|4D88|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxq490
pdb|4D89|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxd552, Derived From A Soaking Experiment
pdb|4D8C|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxd552, Derived From A Co-Crystallization Experiment
pdb|4D8C|B Chain B, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxd552, Derived From A Co-Crystallization Experiment
pdb|4D8C|C Chain C, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxd552, Derived From A Co-Crystallization Experiment
Length = 402
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 70/288 (24%), Positives = 115/288 (39%), Gaps = 54/288 (18%)
Query: 222 HAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVSVP--SL------LAKAGLI 273
H P +V+++ I + +++G+ +G++GL +++ P SL L K +
Sbjct: 105 HGPNVTVRAN--IAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHV 162
Query: 274 QNSFSI-----CFDENDS-------GSVFFG--DQGPATQQSTSFLPIGEK--YDAYFVG 317
N FS+ F N S GS+ G D T S + PI + Y+ V
Sbjct: 163 PNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTG-SLWYTPIRREWYYEVIIVR 221
Query: 318 VE--SYCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQG---N 372
VE + C + +++VDSG + LP +++ E VK K SS G
Sbjct: 222 VEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVF-EAAVKSIKAASSTEKFPDGFWLG 280
Query: 373 SWKYCYNASSEEMLKVPDMRLIFS---KNQSF--VVRNHIFSFPENEGFT------VFCL 421
C+ A + P + L NQSF + + P + T F +
Sbjct: 281 EQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAI 340
Query: 422 TVMSTDGDYGIIGQNFMMGHRIVFDRENLKLAWSHSKCEEVIDKSHVH 469
+ ST ++G M G +VFDR ++ ++ S C HVH
Sbjct: 341 SQSSTGT---VMGAVIMEGFYVVFDRARKRIGFAVSAC-------HVH 378
>pdb|2WJO|A Chain A, Human Bace (Beta Secretase) In Complex With
Cyclohexanecarboxylic Acid (2-(2-Am Ino-6-Phenoxy-4h-
Quinazolin-3-Yl)-2-Cyclohexyl-Ethyl)-Amide
Length = 412
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 71/288 (24%), Positives = 116/288 (40%), Gaps = 54/288 (18%)
Query: 222 HAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVSVP--SL------LAKAGLI 273
H P +V+++ I + +++G+ +G++GL +++ P SL L K +
Sbjct: 93 HGPNVTVRAN--IAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHV 150
Query: 274 QNSFSI--C---FDENDS-------GSVFFG--DQGPATQQSTSFLPIGEK--YDAYFVG 317
N FS+ C F N S GS+ G D T S + PI + Y+ V
Sbjct: 151 PNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTG-SLWYTPIRREWYYEVIIVR 209
Query: 318 VE--SYCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQG---N 372
VE + C + +++VDSG + LP +++ E VK K SS G
Sbjct: 210 VEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVF-EAAVKSIKAASSTEKFPDGFWLG 268
Query: 373 SWKYCYNASSEEMLKVPDMRLIFS---KNQSF--VVRNHIFSFPENEGFT------VFCL 421
C+ A + P + L NQSF + + P + T F +
Sbjct: 269 EQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAI 328
Query: 422 TVMSTDGDYGIIGQNFMMGHRIVFDRENLKLAWSHSKCEEVIDKSHVH 469
+ ST ++G M G +VFDR ++ ++ S C HVH
Sbjct: 329 SQSSTGT---VMGAVIMEGFYVVFDRARKRIGFAVSAC-------HVH 366
>pdb|3R1G|B Chain B, Structure Basis Of Allosteric Inhibition Of Bace1 By An
Exosite- Binding Antibody
Length = 402
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 67/285 (23%), Positives = 113/285 (39%), Gaps = 48/285 (16%)
Query: 222 HAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVSVP--SL------LAKAGLI 273
H P +V+++ I + +++G+ +G++GL +++ P SL L K +
Sbjct: 96 HGPNVTVRAN--IAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHV 153
Query: 274 QNSFSI-----CFDENDS-------GSVFFG--DQGPATQQSTSFLPIGEK--YDAYFVG 317
N FS+ F N S GS+ G D T S + PI + Y+ V
Sbjct: 154 PNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTG-SLWYTPIRREWYYEVIIVR 212
Query: 318 VE--SYCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQG---N 372
VE + C + +++VDSG + LP +++ E VK K SS G
Sbjct: 213 VEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVF-EAAVKSIKAASSTEKFPDGFWLG 271
Query: 373 SWKYCYNASSEEMLKVPDMRLIFS---KNQSFVV----RNHIFSFPENEGFTVFCLTVMS 425
C+ A + P + L NQSF + + ++ + C
Sbjct: 272 EQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAI 331
Query: 426 TDGDYG-IIGQNFMMGHRIVFDRENLKLAWSHSKCEEVIDKSHVH 469
+ G ++G M G +VFDR ++ ++ S C HVH
Sbjct: 332 SQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC-------HVH 369
>pdb|1FKN|A Chain A, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|1FKN|B Chain B, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|1M4H|A Chain A, Crystal Structure Of Beta-Secretase Complexed With
Inhibitor Om00-3
pdb|1M4H|B Chain B, Crystal Structure Of Beta-Secretase Complexed With
Inhibitor Om00-3
Length = 391
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 68/285 (23%), Positives = 114/285 (40%), Gaps = 48/285 (16%)
Query: 222 HAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVSVP--SL------LAKAGLI 273
H P +V+++ I + +++G+ +G++GL +++ P SL L K +
Sbjct: 95 HGPNVTVRAN--IAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHV 152
Query: 274 QNSFSI--C---FDENDS-------GSVFFG--DQGPATQQSTSFLPIGEK--YDAYFVG 317
N FS+ C F N S GS+ G D T S + PI + Y+ V
Sbjct: 153 PNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTG-SLWYTPIRREWYYEVIIVR 211
Query: 318 VE--SYCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQG---N 372
VE + C + +++VDSG + LP +++ E VK K SS G
Sbjct: 212 VEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVF-EAAVKSIKAASSTEKFPDGFWLG 270
Query: 373 SWKYCYNASSEEMLKVPDMRLIFS---KNQSFVV----RNHIFSFPENEGFTVFCLTVMS 425
C+ A + P + L NQSF + + ++ + C
Sbjct: 271 EQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAI 330
Query: 426 TDGDYG-IIGQNFMMGHRIVFDRENLKLAWSHSKCEEVIDKSHVH 469
+ G ++G M G +VFDR ++ ++ S C HVH
Sbjct: 331 SQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC-------HVH 368
>pdb|2OF0|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 5
pdb|2OHK|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
1- Amino-Isoquinoline
pdb|2OHL|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
2- Aminoquinoline
pdb|2OHM|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
N~3~-Benzylpyridine-2,3-Diamine
pdb|2OHN|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
4- (4-Fluorobenzyl)piperidine
pdb|2OHQ|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 4
pdb|2OHR|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 6a
pdb|2OHS|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 6b
pdb|2OHT|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 7
pdb|2OHU|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 8b
pdb|2OHP|A Chain A, X-ray Crystal Structure Of Beta Secretase Complexed With
Compound 3
Length = 402
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 67/285 (23%), Positives = 113/285 (39%), Gaps = 48/285 (16%)
Query: 222 HAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVSVP--SL------LAKAGLI 273
H P +V+++ I + +++G+ +G++GL +++ P SL L K +
Sbjct: 106 HGPNVTVRAN--IAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHV 163
Query: 274 QNSFSI-----CFDENDS-------GSVFFG--DQGPATQQSTSFLPIGEK--YDAYFVG 317
N FS+ F N S GS+ G D T S + PI + Y+ V
Sbjct: 164 PNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTG-SLWYTPIRREWYYEVIIVR 222
Query: 318 VE--SYCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQG---N 372
VE + C + +++VDSG + LP +++ E VK K SS G
Sbjct: 223 VEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVF-EAAVKSIKAASSTEKFPDGFWLG 281
Query: 373 SWKYCYNASSEEMLKVPDMRLIFS---KNQSFVV----RNHIFSFPENEGFTVFCLTVMS 425
C+ A + P + L NQSF + + ++ + C
Sbjct: 282 EQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAI 341
Query: 426 TDGDYG-IIGQNFMMGHRIVFDRENLKLAWSHSKCEEVIDKSHVH 469
+ G ++G M G +VFDR ++ ++ S C HVH
Sbjct: 342 SQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC-------HVH 379
>pdb|3CIB|A Chain A, Structure Of Bace Bound To Sch727596
pdb|3CIB|B Chain B, Structure Of Bace Bound To Sch727596
pdb|3CIC|A Chain A, Structure Of Bace Bound To Sch709583
pdb|3CIC|B Chain B, Structure Of Bace Bound To Sch709583
pdb|3CID|A Chain A, Structure Of Bace Bound To Sch726222
pdb|3CID|B Chain B, Structure Of Bace Bound To Sch726222
pdb|4FS4|A Chain A, Structure Of Bace Bound To
(S)-4-(3'-Methoxy-[1,1'-Biphenyl]-3-Yl)-1,
4-Dimethyl-6-Oxotetrahydropyrimidin-2(1h)-Iminium
pdb|4FS4|B Chain B, Structure Of Bace Bound To
(S)-4-(3'-Methoxy-[1,1'-Biphenyl]-3-Yl)-1,
4-Dimethyl-6-Oxotetrahydropyrimidin-2(1h)-Iminium
Length = 390
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 68/285 (23%), Positives = 114/285 (40%), Gaps = 48/285 (16%)
Query: 222 HAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVSVP--SL------LAKAGLI 273
H P +V+++ I + +++G+ +G++GL +++ P SL L K +
Sbjct: 93 HGPNVTVRAN--IAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHV 150
Query: 274 QNSFSI--C---FDENDS-------GSVFFG--DQGPATQQSTSFLPIGEK--YDAYFVG 317
N FS+ C F N S GS+ G D T S + PI + Y+ V
Sbjct: 151 PNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTG-SLWYTPIRREWYYEVIIVR 209
Query: 318 VE--SYCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQG---N 372
VE + C + +++VDSG + LP +++ E VK K SS G
Sbjct: 210 VEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVF-EAAVKSIKAASSTEKFPDGFWLG 268
Query: 373 SWKYCYNASSEEMLKVPDMRLIFS---KNQSFVV----RNHIFSFPENEGFTVFCLTVMS 425
C+ A + P + L NQSF + + ++ + C
Sbjct: 269 EQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAI 328
Query: 426 TDGDYG-IIGQNFMMGHRIVFDRENLKLAWSHSKCEEVIDKSHVH 469
+ G ++G M G +VFDR ++ ++ S C HVH
Sbjct: 329 SQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC-------HVH 366
>pdb|4B1D|A Chain A, New Aminoimidazoles As Bace-1 Inhibitors: From Rational
Design To Ab-Lowering In Brain
pdb|4B1E|A Chain A, New Aminoimidazoles As Bace-1 Inhibitors: From Rational
Design To Ab-Lowering In Brain
Length = 388
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 68/285 (23%), Positives = 114/285 (40%), Gaps = 48/285 (16%)
Query: 222 HAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVSVP--SL------LAKAGLI 273
H P +V+++ I + +++G+ +G++GL +++ P SL L K +
Sbjct: 93 HGPNVTVRAN--IAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHV 150
Query: 274 QNSFSI--C---FDENDS-------GSVFFG--DQGPATQQSTSFLPIGEK--YDAYFVG 317
N FS+ C F N S GS+ G D T S + PI + Y+ V
Sbjct: 151 PNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTG-SLWYTPIRREWYYEVIIVR 209
Query: 318 VE--SYCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQG---N 372
VE + C + +++VDSG + LP +++ E VK K SS G
Sbjct: 210 VEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVF-EAAVKSIKAASSTEKFPDGFWLG 268
Query: 373 SWKYCYNASSEEMLKVPDMRLIFS---KNQSFVV----RNHIFSFPENEGFTVFCLTVMS 425
C+ A + P + L NQSF + + ++ + C
Sbjct: 269 EQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAI 328
Query: 426 TDGDYG-IIGQNFMMGHRIVFDRENLKLAWSHSKCEEVIDKSHVH 469
+ G ++G M G +VFDR ++ ++ S C HVH
Sbjct: 329 SQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC-------HVH 366
>pdb|1SGZ|A Chain A, Crystal Structure Of Unbound Beta-Secretase Catalytic
Domain.
pdb|1SGZ|B Chain B, Crystal Structure Of Unbound Beta-Secretase Catalytic
Domain.
pdb|1SGZ|C Chain C, Crystal Structure Of Unbound Beta-Secretase Catalytic
Domain.
pdb|1SGZ|D Chain D, Crystal Structure Of Unbound Beta-Secretase Catalytic
Domain.
pdb|1XS7|D Chain D, Crystal Structure Of A Cycloamide-Urethane-Derived Novel
Inhibitor Bound To Human Brain Memapsin 2
(Beta-Secretase).
pdb|1XN2|A Chain A, New Substrate Binding Pockets For Beta-Secretase.
pdb|1XN2|B Chain B, New Substrate Binding Pockets For Beta-Secretase.
pdb|1XN2|C Chain C, New Substrate Binding Pockets For Beta-Secretase.
pdb|1XN2|D Chain D, New Substrate Binding Pockets For Beta-Secretase.
pdb|1XN3|A Chain A, Crystal Structure Of Beta-Secretase Bound To A Long
Inhibitor With Additional Upstream Residues.
pdb|1XN3|B Chain B, Crystal Structure Of Beta-Secretase Bound To A Long
Inhibitor With Additional Upstream Residues.
pdb|1XN3|C Chain C, Crystal Structure Of Beta-Secretase Bound To A Long
Inhibitor With Additional Upstream Residues.
pdb|1XN3|D Chain D, Crystal Structure Of Beta-Secretase Bound To A Long
Inhibitor With Additional Upstream Residues.
pdb|2G94|A Chain A, Crystal Structure Of Beta-secretase Bound To A Potent And
Highly Selective Inhibitor.
pdb|2G94|B Chain B, Crystal Structure Of Beta-secretase Bound To A Potent And
Highly Selective Inhibitor.
pdb|2G94|C Chain C, Crystal Structure Of Beta-secretase Bound To A Potent And
Highly Selective Inhibitor.
pdb|2G94|D Chain D, Crystal Structure Of Beta-secretase Bound To A Potent And
Highly Selective Inhibitor.
pdb|2P4J|A Chain A, Crystal Structure Of Beta-Secretase Bond To An Inhibitor
With Isophthalamide Derivatives At P2-P3
pdb|2P4J|B Chain B, Crystal Structure Of Beta-Secretase Bond To An Inhibitor
With Isophthalamide Derivatives At P2-P3
pdb|2P4J|C Chain C, Crystal Structure Of Beta-Secretase Bond To An Inhibitor
With Isophthalamide Derivatives At P2-P3
pdb|2P4J|D Chain D, Crystal Structure Of Beta-Secretase Bond To An Inhibitor
With Isophthalamide Derivatives At P2-P3
pdb|2VKM|A Chain A, Crystal Structure Of Grl-8234 Bound To Bace
(Beta-Secretase)
pdb|2VKM|B Chain B, Crystal Structure Of Grl-8234 Bound To Bace
(Beta-Secretase)
pdb|2VKM|C Chain C, Crystal Structure Of Grl-8234 Bound To Bace
(Beta-Secretase)
pdb|2VKM|D Chain D, Crystal Structure Of Grl-8234 Bound To Bace
(Beta-Secretase)
pdb|3UFL|A Chain A, Discovery Of Pyrrolidine-Based B-Secretase Inhibitors:
Lead Advancement Through Conformational Design For
Maintenance Of Ligand Binding Efficiency
Length = 389
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 68/285 (23%), Positives = 114/285 (40%), Gaps = 48/285 (16%)
Query: 222 HAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVSVP--SL------LAKAGLI 273
H P +V+++ I + +++G+ +G++GL +++ P SL L K +
Sbjct: 93 HGPNVTVRAN--IAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHV 150
Query: 274 QNSFSI--C---FDENDS-------GSVFFG--DQGPATQQSTSFLPIGEK--YDAYFVG 317
N FS+ C F N S GS+ G D T S + PI + Y+ V
Sbjct: 151 PNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTG-SLWYTPIRREWYYEVIIVR 209
Query: 318 VE--SYCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQG---N 372
VE + C + +++VDSG + LP +++ E VK K SS G
Sbjct: 210 VEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVF-EAAVKSIKAASSTEKFPDGFWLG 268
Query: 373 SWKYCYNASSEEMLKVPDMRLIFS---KNQSFVV----RNHIFSFPENEGFTVFCLTVMS 425
C+ A + P + L NQSF + + ++ + C
Sbjct: 269 EQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAI 328
Query: 426 TDGDYG-IIGQNFMMGHRIVFDRENLKLAWSHSKCEEVIDKSHVH 469
+ G ++G M G +VFDR ++ ++ S C HVH
Sbjct: 329 SQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC-------HVH 366
>pdb|3U6A|A Chain A, Rational Design And Synthesis Of Aminopiperazinones As
Beta Secretase (Bace) Inhibitors
pdb|3U6A|B Chain B, Rational Design And Synthesis Of Aminopiperazinones As
Beta Secretase (Bace) Inhibitors
pdb|3U6A|C Chain C, Rational Design And Synthesis Of Aminopiperazinones As
Beta Secretase (Bace) Inhibitors
Length = 390
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 68/285 (23%), Positives = 114/285 (40%), Gaps = 48/285 (16%)
Query: 222 HAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVSVP--SL------LAKAGLI 273
H P +V+++ I + +++G+ +G++GL +++ P SL L K +
Sbjct: 94 HGPNVTVRAN--IAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHV 151
Query: 274 QNSFSI--C---FDENDS-------GSVFFG--DQGPATQQSTSFLPIGEK--YDAYFVG 317
N FS+ C F N S GS+ G D T S + PI + Y+ V
Sbjct: 152 PNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTG-SLWYTPIRREWYYEVIIVR 210
Query: 318 VE--SYCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQG---N 372
VE + C + +++VDSG + LP +++ E VK K SS G
Sbjct: 211 VEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVF-EAAVKSIKAASSTEKFPDGFWLG 269
Query: 373 SWKYCYNASSEEMLKVPDMRLIFS---KNQSFVV----RNHIFSFPENEGFTVFCLTVMS 425
C+ A + P + L NQSF + + ++ + C
Sbjct: 270 EQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAI 329
Query: 426 TDGDYG-IIGQNFMMGHRIVFDRENLKLAWSHSKCEEVIDKSHVH 469
+ G ++G M G +VFDR ++ ++ S C HVH
Sbjct: 330 SQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC-------HVH 367
>pdb|2ZJJ|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic
Acid (2-Mercapto-Ethyl)- Amide
Length = 405
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 68/285 (23%), Positives = 114/285 (40%), Gaps = 48/285 (16%)
Query: 222 HAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVSVP--SL------LAKAGLI 273
H P +V+++ I + +++G+ +G++GL +++ P SL L K +
Sbjct: 109 HGPNVTVRAN--IAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHV 166
Query: 274 QNSFSI--C---FDENDS-------GSVFFG--DQGPATQQSTSFLPIGEK--YDAYFVG 317
N FS+ C F N S GS+ G D T S + PI + Y+ V
Sbjct: 167 PNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTG-SLWYTPIRREWYYEVIIVR 225
Query: 318 VE--SYCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQG---N 372
VE + C + +++VDSG + LP +++ E VK K SS G
Sbjct: 226 VEINGQDLKMDCKEYNYDKSIVDSGCTNLRLPKKVF-EAAVKSIKAASSTEKFPDGFWLG 284
Query: 373 SWKYCYNASSEEMLKVPDMRLIFS---KNQSFVV----RNHIFSFPENEGFTVFCLTVMS 425
C+ A + P + L NQSF + + ++ + C
Sbjct: 285 EQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAI 344
Query: 426 TDGDYG-IIGQNFMMGHRIVFDRENLKLAWSHSKCEEVIDKSHVH 469
+ G ++G M G +VFDR ++ ++ S C HVH
Sbjct: 345 SQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC-------HVH 382
>pdb|2QZX|A Chain A, Secreted Aspartic Proteinase (Sap) 5 From Candida Albicans
pdb|2QZX|B Chain B, Secreted Aspartic Proteinase (Sap) 5 From Candida Albicans
Length = 342
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 114 IDIGTPNVSFLVALDAGSNLLWVPCQCIQCAP 145
I +G+ N V +D GS+ LW+P + C P
Sbjct: 18 ITVGSDNQKLNVIVDTGSSDLWIPDSNVICIP 49
>pdb|4DPF|A Chain A, Bace-1 In Complex With A Hea-Macrocyclic Type Inhibitor
pdb|4DPI|A Chain A, Bace-1 In Complex With Hea-Macrocyclic Inhibitor, Mv078512
Length = 391
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 68/285 (23%), Positives = 114/285 (40%), Gaps = 48/285 (16%)
Query: 222 HAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVSVP--SL------LAKAGLI 273
H P +V+++ I + +++G+ +G++GL +++ P SL L K +
Sbjct: 95 HGPNVTVRAN--IAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHV 152
Query: 274 QNSFSI--C---FDENDS-------GSVFFG--DQGPATQQSTSFLPIGEK--YDAYFVG 317
N FS+ C F N S GS+ G D T S + PI + Y+ V
Sbjct: 153 PNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTG-SLWYTPIRREWYYEVIIVR 211
Query: 318 VE--SYCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQG---N 372
VE + C + +++VDSG + LP +++ E VK K SS G
Sbjct: 212 VEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVF-EAAVKSIKAASSTEKFPDGFWLG 270
Query: 373 SWKYCYNASSEEMLKVPDMRLIFS---KNQSFVV----RNHIFSFPENEGFTVFCLTVMS 425
C+ A + P + L NQSF + + ++ + C
Sbjct: 271 EQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAI 330
Query: 426 TDGDYG-IIGQNFMMGHRIVFDRENLKLAWSHSKCEEVIDKSHVH 469
+ G ++G M G +VFDR ++ ++ S C HVH
Sbjct: 331 SQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC-------HVH 368
>pdb|3TPJ|A Chain A, Apo Structure Of Bace1
pdb|3TPL|A Chain A, Apo Structure Of Bace1
pdb|3TPL|B Chain B, Apo Structure Of Bace1
pdb|3TPL|C Chain C, Apo Structure Of Bace1
pdb|3TPP|A Chain A, Crystal Structure Of Bace1 Complexed With An Inhibitor
pdb|3UQP|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQU|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQW|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQX|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|4DV9|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|4DVF|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|4DVF|B Chain B, Crystal Structure Of Bace1 With Its Inhibitor
pdb|4FGX|A Chain A, Crystal Structure Of Bace1 With Novel Inhibitor
Length = 433
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 70/288 (24%), Positives = 115/288 (39%), Gaps = 54/288 (18%)
Query: 222 HAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVSVP--SL------LAKAGLI 273
H P +V+++ I + +++G+ +G++GL +++ P SL L K +
Sbjct: 129 HGPNVTVRAN--IAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHV 186
Query: 274 QNSFSI-----CFDENDS-------GSVFFG--DQGPATQQSTSFLPIGEK--YDAYFVG 317
N FS+ F N S GS+ G D T S + PI + Y+ V
Sbjct: 187 PNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTG-SLWYTPIRREWYYEVIIVR 245
Query: 318 VE--SYCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQG---N 372
VE + C + +++VDSG + LP +++ E VK K SS G
Sbjct: 246 VEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVF-EAAVKSIKAASSTEKFPDGFWLG 304
Query: 373 SWKYCYNASSEEMLKVPDMRLIFS---KNQSF--VVRNHIFSFPENEGFT------VFCL 421
C+ A + P + L NQSF + + P + T F +
Sbjct: 305 EQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAI 364
Query: 422 TVMSTDGDYGIIGQNFMMGHRIVFDRENLKLAWSHSKCEEVIDKSHVH 469
+ ST ++G M G +VFDR ++ ++ S C HVH
Sbjct: 365 SQSSTGT---VMGAVIMEGFYVVFDRARKRIGFAVSAC-------HVH 402
>pdb|3KMX|A Chain A, Structure Of Bace Bound To Sch346572
pdb|3KMX|B Chain B, Structure Of Bace Bound To Sch346572
pdb|3KMY|A Chain A, Structure Of Bace Bound To Sch12472
pdb|3KMY|B Chain B, Structure Of Bace Bound To Sch12472
pdb|3KN0|A Chain A, Structure Of Bace Bound To Sch708236
pdb|3KN0|B Chain B, Structure Of Bace Bound To Sch708236
pdb|3LNK|A Chain A, Structure Of Bace Bound To Sch743813
pdb|3LNK|B Chain B, Structure Of Bace Bound To Sch743813
pdb|4FRS|A Chain A, Structure Of Bace In Complex With
(S)-4-(3-Chloro-5-(5-(Prop-1-Yn-1-
Yl)pyridin-3-Yl)thiophen-2-Yl)-1,
4-Dimethyl-6-Oxotetrahydropyrimidin- 2(1h)-Iminium
pdb|4FRS|B Chain B, Structure Of Bace In Complex With
(S)-4-(3-Chloro-5-(5-(Prop-1-Yn-1-
Yl)pyridin-3-Yl)thiophen-2-Yl)-1,
4-Dimethyl-6-Oxotetrahydropyrimidin- 2(1h)-Iminium
Length = 395
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 67/285 (23%), Positives = 113/285 (39%), Gaps = 48/285 (16%)
Query: 222 HAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVSVP--SL------LAKAGLI 273
H P +V+++ I + +++G+ +G++GL +++ P SL L K +
Sbjct: 98 HGPNVTVRAN--IAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHV 155
Query: 274 QNSFSI-----CFDENDS-------GSVFFG--DQGPATQQSTSFLPIGEK--YDAYFVG 317
N FS+ F N S GS+ G D T S + PI + Y+ V
Sbjct: 156 PNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTG-SLWYTPIRREWYYEVIIVR 214
Query: 318 VE--SYCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQG---N 372
VE + C + +++VDSG + LP +++ E VK K SS G
Sbjct: 215 VEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVF-EAAVKSIKAASSTEKFPDGFWLG 273
Query: 373 SWKYCYNASSEEMLKVPDMRLIFS---KNQSFVV----RNHIFSFPENEGFTVFCLTVMS 425
C+ A + P + L NQSF + + ++ + C
Sbjct: 274 EQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAI 333
Query: 426 TDGDYG-IIGQNFMMGHRIVFDRENLKLAWSHSKCEEVIDKSHVH 469
+ G ++G M G +VFDR ++ ++ S C HVH
Sbjct: 334 SQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC-------HVH 371
>pdb|3TPR|A Chain A, Crystal Structure Of Bace1 Complexed With An Inhibitor
pdb|3UQR|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQR|B Chain B, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQR|C Chain C, Crystal Structure Of Bace1 With Its Inhibitor
Length = 433
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 70/288 (24%), Positives = 115/288 (39%), Gaps = 54/288 (18%)
Query: 222 HAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVSVP--SL------LAKAGLI 273
H P +V+++ I + +++G+ +G++GL +++ P SL L K +
Sbjct: 129 HGPNVTVRAN--IAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHV 186
Query: 274 QNSFSI-----CFDENDS-------GSVFFG--DQGPATQQSTSFLPIGEK--YDAYFVG 317
N FS+ F N S GS+ G D T S + PI + Y+ V
Sbjct: 187 PNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTG-SLWYTPIRREWYYEVIIVR 245
Query: 318 VE--SYCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQG---N 372
VE + C + +++VDSG + LP +++ E VK K SS G
Sbjct: 246 VEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVF-EAAVKSIKAASSTEKFPDGFWLG 304
Query: 373 SWKYCYNASSEEMLKVPDMRLIFS---KNQSF--VVRNHIFSFPENEGFT------VFCL 421
C+ A + P + L NQSF + + P + T F +
Sbjct: 305 EQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAI 364
Query: 422 TVMSTDGDYGIIGQNFMMGHRIVFDRENLKLAWSHSKCEEVIDKSHVH 469
+ ST ++G M G +VFDR ++ ++ S C HVH
Sbjct: 365 SQSSTGT---VMGAVIMEGFYVVFDRARKRIGFAVSAC-------HVH 402
>pdb|2QK5|A Chain A, Structure Of Bace1 Bound To Sch626485
pdb|2QK5|B Chain B, Structure Of Bace1 Bound To Sch626485
pdb|2QMD|A Chain A, Structure Of Bace Bound To Sch722924
pdb|2QMD|B Chain B, Structure Of Bace Bound To Sch722924
pdb|2QMF|A Chain A, Structure Of Bace Bound To Sch735310
pdb|2QMF|B Chain B, Structure Of Bace Bound To Sch735310
pdb|2QP8|A Chain A, Structure Of Bace Bound To Sch734723
pdb|2QP8|B Chain B, Structure Of Bace Bound To Sch734723
pdb|2QMG|A Chain A, Structure Of Bace Bound To Sch745966
pdb|2QMG|B Chain B, Structure Of Bace Bound To Sch745966
Length = 395
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 67/285 (23%), Positives = 113/285 (39%), Gaps = 48/285 (16%)
Query: 222 HAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVSVP--SL------LAKAGLI 273
H P +V+++ I + +++G+ +G++GL +++ P SL L K +
Sbjct: 98 HGPNVTVRAN--IAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHV 155
Query: 274 QNSFSI-----CFDENDS-------GSVFFG--DQGPATQQSTSFLPIGEK--YDAYFVG 317
N FS+ F N S GS+ G D T S + PI + Y+ V
Sbjct: 156 PNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTG-SLWYTPIRREWYYEVIIVR 214
Query: 318 VE--SYCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQG---N 372
VE + C + +++VDSG + LP +++ E VK K SS G
Sbjct: 215 VEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVF-EAAVKSIKAASSTEKFPDGFWLG 273
Query: 373 SWKYCYNASSEEMLKVPDMRLIFS---KNQSFVV----RNHIFSFPENEGFTVFCLTVMS 425
C+ A + P + L NQSF + + ++ + C
Sbjct: 274 EQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAI 333
Query: 426 TDGDYG-IIGQNFMMGHRIVFDRENLKLAWSHSKCEEVIDKSHVH 469
+ G ++G M G +VFDR ++ ++ S C HVH
Sbjct: 334 SQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC-------HVH 371
>pdb|2ZJI|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-[1-(2,
6-Dimethoxy-Benzyl)-Piperidin-4-Yl]-4-Mercapto-
Butyramide
Length = 405
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 68/285 (23%), Positives = 114/285 (40%), Gaps = 48/285 (16%)
Query: 222 HAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVSVP--SL------LAKAGLI 273
H P +V+++ I + +++G+ +G++GL +++ P SL L K +
Sbjct: 109 HGPNVTVRAN--IAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHV 166
Query: 274 QNSFSI--C---FDENDS-------GSVFFG--DQGPATQQSTSFLPIGEK--YDAYFVG 317
N FS+ C F N S GS+ G D T S + PI + Y+ V
Sbjct: 167 PNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTG-SLWYTPIRREWYYEVIIVR 225
Query: 318 VE--SYCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQG---N 372
VE + C + +++VDSG + LP +++ E VK K SS G
Sbjct: 226 VEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVF-EAAVKSIKAASSTEKFPDGFWLG 284
Query: 373 SWKYCYNASSEEMLKVPDMRLIFS---KNQSFVV----RNHIFSFPENEGFTVFCLTVMS 425
C+ A + P + L NQSF + + ++ + C
Sbjct: 285 EQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAI 344
Query: 426 TDGDYG-IIGQNFMMGHRIVFDRENLKLAWSHSKCEEVIDKSHVH 469
+ G ++G M G +VFDR ++ ++ S C HVH
Sbjct: 345 SQSSCGTVMGAVIMEGFYVVFDRARKRIGFAVSAC-------HVH 382
>pdb|2RMP|A Chain A, Rmp-Pepstatin A Complex
pdb|2ASI|A Chain A, Aspartic Proteinase
Length = 361
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 114 IDIGTPNVSFLVALDAGSNLLWVP 137
+ IGTP FL+ D GS+ WVP
Sbjct: 24 VSIGTPGQDFLLLFDTGSSDTWVP 47
>pdb|1LS5|A Chain A, Crystal Structure Of Plasmepsin Iv From P. Falciparum In
Complex With Pepstatin A
pdb|1LS5|B Chain B, Crystal Structure Of Plasmepsin Iv From P. Falciparum In
Complex With Pepstatin A
Length = 328
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 49/230 (21%), Positives = 91/230 (39%), Gaps = 38/230 (16%)
Query: 247 GAAPDGVMGLGLGDVSVPSL------LAKAGLIQN---SFSICFDENDSGSVFFGD---- 293
G+ DG++GLG D+S+ S+ L K I N +F + + G + G
Sbjct: 117 GSEFDGILGLGWKDLSIGSIDPVVVELKKQNKIDNALFTFYLPVHDKHVGYLTIGGIESD 176
Query: 294 --QGPATQQSTSFLPIGEKYDAYFVGVESYCIGNSCLTQSGFQALVDSGASFTFLPTEIY 351
+GP T + + +D Y+ G + ++ A+VDSG S PT
Sbjct: 177 FYEGPLTYEKLN-------HDLYWQIDLDIHFGKYVMQKA--NAVVDSGTSTITAPTSF- 226
Query: 352 AEVVVKFDKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMRLIFSKNQSFVVRNHIFSFP 411
+ KF + ++ ++ C N +P + S+N + + + P
Sbjct: 227 ---LNKFFRDMNVIKVPFLPLYVTTCDNDD------LPTLEF-HSRNNKYTLEPEFYMDP 276
Query: 412 ENEGFTVFCLTVM---STDGDYGIIGQNFMMGHRIVFDRENLKLAWSHSK 458
++ C+ + D + I+G FM + VFD E + ++ +K
Sbjct: 277 LSDIDPALCMLYILPVDIDDNTFILGDPFMRKYFTVFDYEKESVGFAVAK 326
>pdb|2HIZ|A Chain A, Crystal Structure Of Human Beta-Secretase (Bace) In The
Presence Of An Inhibitor
pdb|2HIZ|B Chain B, Crystal Structure Of Human Beta-Secretase (Bace) In The
Presence Of An Inhibitor
pdb|2HIZ|C Chain C, Crystal Structure Of Human Beta-Secretase (Bace) In The
Presence Of An Inhibitor
pdb|2P83|A Chain A, Potent And Selective Isophthalamide S2 Hydroxyethylamine
Inhibitor Of Bace1
pdb|2P83|B Chain B, Potent And Selective Isophthalamide S2 Hydroxyethylamine
Inhibitor Of Bace1
pdb|2P83|C Chain C, Potent And Selective Isophthalamide S2 Hydroxyethylamine
Inhibitor Of Bace1
Length = 455
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 70/288 (24%), Positives = 115/288 (39%), Gaps = 54/288 (18%)
Query: 222 HAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVSVP--SL------LAKAGLI 273
H P +V+++ I + +++G+ +G++GL +++ P SL L K +
Sbjct: 152 HGPNVTVRAN--IAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHV 209
Query: 274 QNSFSI-----CFDENDS-------GSVFFG--DQGPATQQSTSFLPIGEK--YDAYFVG 317
N FS+ F N S GS+ G D T S + PI + Y+ V
Sbjct: 210 PNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTG-SLWYTPIRREWYYEVIIVR 268
Query: 318 VE--SYCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQG---N 372
VE + C + +++VDSG + LP +++ E VK K SS G
Sbjct: 269 VEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVF-EAAVKSIKAASSTEKFPDGFWLG 327
Query: 373 SWKYCYNASSEEMLKVPDMRLIFS---KNQSF--VVRNHIFSFPENEGFT------VFCL 421
C+ A + P + L NQSF + + P + T F +
Sbjct: 328 EQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAI 387
Query: 422 TVMSTDGDYGIIGQNFMMGHRIVFDRENLKLAWSHSKCEEVIDKSHVH 469
+ ST ++G M G +VFDR ++ ++ S C HVH
Sbjct: 388 SQSSTGT---VMGAVIMEGFYVVFDRARKRIGFAVSAC-------HVH 425
>pdb|3LPI|A Chain A, Structure Of Bace Bound To Sch745132
pdb|3LPI|B Chain B, Structure Of Bace Bound To Sch745132
pdb|3LPJ|A Chain A, Structure Of Bace Bound To Sch743641
pdb|3LPJ|B Chain B, Structure Of Bace Bound To Sch743641
pdb|3LPK|A Chain A, Structure Of Bace Bound To Sch747123
pdb|3LPK|B Chain B, Structure Of Bace Bound To Sch747123
pdb|3OHF|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-655295 Aka N~3~-((1s,2r)-1-
Benzyl-2-Hydroxy-3-((3-
Methoxybenzyl)amino)propyl)-N~1~,
N~1~-Dibutyl-1h-Indole-1,3- Dicarboxamide
pdb|3OHF|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-655295 Aka N~3~-((1s,2r)-1-
Benzyl-2-Hydroxy-3-((3-
Methoxybenzyl)amino)propyl)-N~1~,
N~1~-Dibutyl-1h-Indole-1,3- Dicarboxamide
pdb|3OHH|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-681889 Aka
N~1~-Butyl-5-Cyano- N~3~-((1s,2r)-1-(3,5-
Difluorobenzyl)-2-Hydroxy-3-((3-
Methoxybenzyl)amino)propyl)-N~1~- Methyl-1h-Indole-1,3-
Dicarboxamide
pdb|3OHH|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-681889 Aka
N~1~-Butyl-5-Cyano- N~3~-((1s,2r)-1-(3,5-
Difluorobenzyl)-2-Hydroxy-3-((3-
Methoxybenzyl)amino)propyl)-N~1~- Methyl-1h-Indole-1,3-
Dicarboxamide
pdb|3R2F|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-693391 Aka
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-((1s,2r)-1-(3,
5-Difluorobenzyl)-2-Hydroxy-2-((2r,4r)-
4-Propoxy-2-Pyrrolidinyl)ethyl)-4-Phenylbutanamide
pdb|3R2F|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-693391 Aka
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-((1s,2r)-1-(3,
5-Difluorobenzyl)-2-Hydroxy-2-((2r,4r)-
4-Propoxy-2-Pyrrolidinyl)ethyl)-4-Phenylbutanamide
pdb|3R2F|D Chain D, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-693391 Aka
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-((1s,2r)-1-(3,
5-Difluorobenzyl)-2-Hydroxy-2-((2r,4r)-
4-Propoxy-2-Pyrrolidinyl)ethyl)-4-Phenylbutanamide
pdb|3R2F|E Chain E, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-693391 Aka
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-((1s,2r)-1-(3,
5-Difluorobenzyl)-2-Hydroxy-2-((2r,4r)-
4-Propoxy-2-Pyrrolidinyl)ethyl)-4-Phenylbutanamide
pdb|3SKF|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3s)-3-(Acetylamino)-3-(Butan-2-Yl)-2-
Oxopyrrolidin-1-
Yl)-N-((2s,
3r)-3-Hydroxy-4-((3-Methoxybenzyl)amino)-1-Phenylbutan-
2- Yl)-4-Phenylbutanamide
pdb|3SKF|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3s)-3-(Acetylamino)-3-(Butan-2-Yl)-2-
Oxopyrrolidin-1-
Yl)-N-((2s,
3r)-3-Hydroxy-4-((3-Methoxybenzyl)amino)-1-Phenylbutan-
2- Yl)-4-Phenylbutanamide
pdb|3SKG|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-
((1s,2r)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,
4-Tetrahydro-3- Isoquinolinyl)ethyl)-4-Phenylbutanamide
pdb|3SKG|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-
((1s,2r)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,
4-Tetrahydro-3- Isoquinolinyl)ethyl)-4-Phenylbutanamide
pdb|3SKG|D Chain D, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-
((1s,2r)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,
4-Tetrahydro-3- Isoquinolinyl)ethyl)-4-Phenylbutanamide
pdb|3SKG|E Chain E, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-
((1s,2r)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,
4-Tetrahydro-3- Isoquinolinyl)ethyl)-4-Phenylbutanamide
pdb|4FSE|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With N-(N-(4-Amino-3,5-
Dichlorobenzyl)carbamimidoyl)-3-(4- Methoxyphenyl)-5-
Methyl-4-Isothiazolecarboxamide
pdb|4FSE|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With N-(N-(4-Amino-3,5-
Dichlorobenzyl)carbamimidoyl)-3-(4- Methoxyphenyl)-5-
Methyl-4-Isothiazolecarboxamide
pdb|4FSE|D Chain D, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With N-(N-(4-Amino-3,5-
Dichlorobenzyl)carbamimidoyl)-3-(4- Methoxyphenyl)-5-
Methyl-4-Isothiazolecarboxamide
pdb|4FSE|E Chain E, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With N-(N-(4-Amino-3,5-
Dichlorobenzyl)carbamimidoyl)-3-(4- Methoxyphenyl)-5-
Methyl-4-Isothiazolecarboxamide
Length = 455
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 70/288 (24%), Positives = 115/288 (39%), Gaps = 54/288 (18%)
Query: 222 HAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVSVP--SL------LAKAGLI 273
H P +V+++ I + +++G+ +G++GL +++ P SL L K +
Sbjct: 151 HGPNVTVRAN--IAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHV 208
Query: 274 QNSFSI-----CFDENDS-------GSVFFG--DQGPATQQSTSFLPIGEK--YDAYFVG 317
N FS+ F N S GS+ G D T S + PI + Y+ V
Sbjct: 209 PNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTG-SLWYTPIRREWYYEVIIVR 267
Query: 318 VE--SYCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQG---N 372
VE + C + +++VDSG + LP +++ E VK K SS G
Sbjct: 268 VEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVF-EAAVKSIKAASSTEKFPDGFWLG 326
Query: 373 SWKYCYNASSEEMLKVPDMRLIFS---KNQSF--VVRNHIFSFPENEGFT------VFCL 421
C+ A + P + L NQSF + + P + T F +
Sbjct: 327 EQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAI 386
Query: 422 TVMSTDGDYGIIGQNFMMGHRIVFDRENLKLAWSHSKCEEVIDKSHVH 469
+ ST ++G M G +VFDR ++ ++ S C HVH
Sbjct: 387 SQSSTGT---VMGAVIMEGFYVVFDRARKRIGFAVSAC-------HVH 424
>pdb|2VA5|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 8c
pdb|2VA6|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 24
pdb|2VA7|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 27
Length = 455
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 70/288 (24%), Positives = 115/288 (39%), Gaps = 54/288 (18%)
Query: 222 HAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVSVP--SL------LAKAGLI 273
H P +V+++ I + +++G+ +G++GL +++ P SL L K +
Sbjct: 152 HGPNVTVRAN--IAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHV 209
Query: 274 QNSFSI-----CFDENDS-------GSVFFG--DQGPATQQSTSFLPIGEK--YDAYFVG 317
N FS+ F N S GS+ G D T S + PI + Y+ V
Sbjct: 210 PNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTG-SLWYTPIRREWYYEVIIVR 268
Query: 318 VE--SYCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQG---N 372
VE + C + +++VDSG + LP +++ E VK K SS G
Sbjct: 269 VEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVF-EAAVKSIKAASSTEKFPDGFWLG 327
Query: 373 SWKYCYNASSEEMLKVPDMRLIFS---KNQSF--VVRNHIFSFPENEGFT------VFCL 421
C+ A + P + L NQSF + + P + T F +
Sbjct: 328 EQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAI 387
Query: 422 TVMSTDGDYGIIGQNFMMGHRIVFDRENLKLAWSHSKCEEVIDKSHVH 469
+ ST ++G M G +VFDR ++ ++ S C HVH
Sbjct: 388 SQSSTGT---VMGAVIMEGFYVVFDRARKRIGFAVSAC-------HVH 425
>pdb|3BRA|A Chain A, Bace-1 Complexed With Compound 1
pdb|3BUF|A Chain A, Bace-1 Complexed With Compound 2
pdb|3BUG|A Chain A, Bace-1 Complexed With Compound 3
pdb|3BUH|A Chain A, Bace-1 Complexed With Compound 4
Length = 409
Score = 28.9 bits (63), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 62/284 (21%), Positives = 111/284 (39%), Gaps = 46/284 (16%)
Query: 222 HAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVSVP--SL------LAKAGLI 273
H P +V+++ I + +++G+ +G++GL +++ P SL L K +
Sbjct: 105 HGPNVTVRAN--IAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHV 162
Query: 274 QNSFSI-----CFDENDS-------GSVFFG--DQGPATQQSTSFLPIGEK--YDAYFVG 317
N FS+ F N S GS+ G D T S + PI + Y+ V
Sbjct: 163 PNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTG-SLWYTPIRREWYYEVIIVR 221
Query: 318 VE--SYCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRI--SLQGNS 373
VE + C + +++VDSG + LP +++ V S+++
Sbjct: 222 VEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVASIKAASSTEKFPDGFWLGE 281
Query: 374 WKYCYNASSEEMLKVPDMRLIFS---KNQSFVV----RNHIFSFPENEGFTVFCLTVMST 426
C+ A + P + L NQSF + + ++ + C +
Sbjct: 282 QLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAIS 341
Query: 427 DGDYG-IIGQNFMMGHRIVFDRENLKLAWSHSKCEEVIDKSHVH 469
G ++G M G +VFDR ++ ++ S C HVH
Sbjct: 342 QSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC-------HVH 378
>pdb|1VRW|A Chain A, Crystal Structure Analysis Of Plasmodium Falciparum Enoyl-
Acyl-Carrier-Protein Reductase With Nadh
pdb|1VRW|B Chain B, Crystal Structure Analysis Of Plasmodium Falciparum Enoyl-
Acyl-Carrier-Protein Reductase With Nadh
pdb|1ZSN|A Chain A, Synthesis, Biological Activity, And X-Ray Crystal
Structural Analysis Of Diaryl Ether Inhibitors Of
Malarial Enoyl Acp Reductase. Part 1:4'-Substituted
Triclosan Derivatives
pdb|1ZSN|B Chain B, Synthesis, Biological Activity, And X-Ray Crystal
Structural Analysis Of Diaryl Ether Inhibitors Of
Malarial Enoyl Acp Reductase. Part 1:4'-Substituted
Triclosan Derivatives
pdb|1ZW1|A Chain A, Synthesis, Biological Activity, And X-ray Crystal
Structural Analysis Of Diaryl Ether Inhibitors Of
Malarial Enoyl Acp Reductase. Part 1:4'-substituted
Triclosan Derivatives
pdb|1ZW1|B Chain B, Synthesis, Biological Activity, And X-ray Crystal
Structural Analysis Of Diaryl Ether Inhibitors Of
Malarial Enoyl Acp Reductase. Part 1:4'-substituted
Triclosan Derivatives
pdb|1ZXB|A Chain A, Synthesis, Biological Activity, And X-Ray Crystal
Structural Analysis Of Diaryl Ether Inhibitors Of
Malarial Enoyl Acp Reductase. Part 1:4'-Substituted
Triclosan Derivatives
pdb|1ZXB|B Chain B, Synthesis, Biological Activity, And X-Ray Crystal
Structural Analysis Of Diaryl Ether Inhibitors Of
Malarial Enoyl Acp Reductase. Part 1:4'-Substituted
Triclosan Derivatives
pdb|1ZXL|A Chain A, Synthesis, Biological Activity, And X-Ray Crystal
Structural Analysis Of Diaryl Ether Inhibitors Of
Malarial Enoyl Acp Reductase. Part 1:4'-Substituted
Triclosan Derivatives
pdb|1ZXL|B Chain B, Synthesis, Biological Activity, And X-Ray Crystal
Structural Analysis Of Diaryl Ether Inhibitors Of
Malarial Enoyl Acp Reductase. Part 1:4'-Substituted
Triclosan Derivatives
Length = 336
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 297 ATQQSTSFLPIGEKYDAYFVG-VESYCIGNSCLTQSGFQALVDSGASFTFLPTEIY 351
A + S + P+ +K + +G V S+ + +G VD+G + FLP +IY
Sbjct: 276 AIEYSEKYAPLRQKLLSTDIGSVASFLLSRESRAITGQTIYVDNGLNIMFLPDDIY 331
>pdb|2O2Y|A Chain A, The Crystal Structure Of P. Falciparum Enoyl Acyl Carrier
Protein Reductase
pdb|2O2Y|B Chain B, The Crystal Structure Of P. Falciparum Enoyl Acyl Carrier
Protein Reductase
pdb|2O2Y|C Chain C, The Crystal Structure Of P. Falciparum Enoyl Acyl Carrier
Protein Reductase
pdb|2O2Y|D Chain D, The Crystal Structure Of P. Falciparum Enoyl Acyl Carrier
Protein Reductase
Length = 349
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 297 ATQQSTSFLPIGEKYDAYFVG-VESYCIGNSCLTQSGFQALVDSGASFTFLPTEIY 351
A + S + P+ +K + +G V S+ + +G VD+G + FLP +IY
Sbjct: 289 AIEYSEKYAPLRQKLLSTDIGSVASFLLSRESRAITGQTIYVDNGLNIMFLPDDIY 344
>pdb|2ZJH|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-(1-Benzyl-Piperidin-4-Yl)-4-Mercapto-Butyramide
pdb|2ZJL|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-[1-(5-Bromo-2,3-Dimethoxy-Benzyl)-Piperidin-
4-Yl]-4-Mercapto-Butyramide
Length = 405
Score = 28.9 bits (63), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 68/285 (23%), Positives = 113/285 (39%), Gaps = 48/285 (16%)
Query: 222 HAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVSVP--SL------LAKAGLI 273
H P +V+++ I + +++G+ +G++GL +++ P SL L K +
Sbjct: 109 HGPNVTVRAN--IAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHV 166
Query: 274 QNSFSI--C---FDENDS-------GSVFFG--DQGPATQQSTSFLPIGEK--YDAYFVG 317
N FS+ C F N S GS+ G D T S + PI + Y+ V
Sbjct: 167 PNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTG-SLWYTPIRREWYYEVIIVR 225
Query: 318 VE--SYCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQG---N 372
VE + C + +++VDSG + LP +++ E VK K SS G
Sbjct: 226 VEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVF-EAAVKSIKAASSTEKFPDGFWLG 284
Query: 373 SWKYCYNASSEEMLKVPDMRLIFS---KNQSFVV----RNHIFSFPENEGFTVFCLTVMS 425
C+ A + P + L NQSF + + ++ + C
Sbjct: 285 EQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAI 344
Query: 426 TDGDYGI-IGQNFMMGHRIVFDRENLKLAWSHSKCEEVIDKSHVH 469
+ G +G M G +VFDR ++ ++ S C HVH
Sbjct: 345 SQSSTGTCMGAVIMEGFYVVFDRARKRIGFAVSAC-------HVH 382
>pdb|1QS8|A Chain A, Crystal Structure Of The P. Vivax Aspartic Proteinase
Plasmepsin Complexed With The Inhibitor Pepstatin A
pdb|1QS8|B Chain B, Crystal Structure Of The P. Vivax Aspartic Proteinase
Plasmepsin Complexed With The Inhibitor Pepstatin A
Length = 329
Score = 28.9 bits (63), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 46/224 (20%), Positives = 83/224 (37%), Gaps = 34/224 (15%)
Query: 251 DGVMGLGLGDVSVPSLLAKAGLIQNSFSICFDENDSGSVFFGDQGPATQQSTSFLPIGEK 310
DG++GLG D+S+ S+ ++N +N + F P +L IG
Sbjct: 123 DGILGLGWKDLSIGSIDPIVVELKN-------QNKIDNALFTFYLPVHDVHAGYLTIGGI 175
Query: 311 YDAYFVGVESYCIGNSCL-------------TQSGFQALVDSGASFTFLPTEIYAEVVVK 357
+ ++ G +Y N L T +VDSG + P+E
Sbjct: 176 EEKFYEGNITYEKLNHDLYWQIDLDVHFGKQTMEKANVIVDSGTTTITAPSEF------- 228
Query: 358 FDKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMRLIFSKNQSFVVRNHIFSFPENEGFT 417
+K ++ + Y ++EM P + S N ++ + + P E
Sbjct: 229 LNKFFANLNVIKVPFLPFYVTTCDNKEM---PTLEFK-SANNTYTLEPEYYMNPILEVDD 284
Query: 418 VFCLTVM---STDGDYGIIGQNFMMGHRIVFDRENLKLAWSHSK 458
C+ M D + I+G FM + VFD + + ++ +K
Sbjct: 285 TLCMITMLPVDIDSNTFILGDPFMRKYFTVFDYDKESVGFAIAK 328
>pdb|1MPP|A Chain A, X-Ray Analyses Of Aspartic Proteinases. V. Structure And
Refinement At 2.0 Angstroms Resolution Of The Aspartic
Proteinase From Mucor Pusillus
Length = 361
Score = 28.5 bits (62), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 10/55 (18%)
Query: 114 IDIGTPNVSFLVALDAGSNLLWVPCQ-------CIQCA---PLSASYYTSLDRNL 158
+ IGTP F + D GS+ WVP + C+ P S+S + D NL
Sbjct: 24 VSIGTPGQDFYLLFDTGSSDTWVPHKGCDNSEGCVGKRFFDPSSSSTFKETDYNL 78
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,222,754
Number of Sequences: 62578
Number of extensions: 551353
Number of successful extensions: 1405
Number of sequences better than 100.0: 108
Number of HSP's better than 100.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 71
Number of HSP's that attempted gapping in prelim test: 1304
Number of HSP's gapped (non-prelim): 169
length of query: 538
length of database: 14,973,337
effective HSP length: 103
effective length of query: 435
effective length of database: 8,527,803
effective search space: 3709594305
effective search space used: 3709594305
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)