Query 009271
Match_columns 538
No_of_seqs 321 out of 1400
Neff 7.8
Searched_HMMs 46136
Date Thu Mar 28 22:31:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009271.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009271hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03146 aspartyl protease fam 100.0 1.2E-66 2.5E-71 553.9 42.7 395 14-461 15-430 (431)
2 KOG1339 Aspartyl protease [Pos 100.0 7.7E-57 1.7E-61 475.6 35.4 334 104-460 41-397 (398)
3 cd05472 cnd41_like Chloroplast 100.0 6.1E-54 1.3E-58 437.3 30.9 287 109-459 1-299 (299)
4 cd06096 Plasmepsin_5 Plasmepsi 100.0 1.1E-53 2.4E-58 440.6 32.0 300 108-460 2-326 (326)
5 cd05489 xylanase_inhibitor_I_l 100.0 3.8E-53 8.2E-58 441.0 32.0 313 116-457 2-361 (362)
6 cd05478 pepsin_A Pepsin A, asp 100.0 8.4E-53 1.8E-57 432.4 30.7 299 101-456 2-317 (317)
7 cd05490 Cathepsin_D2 Cathepsin 100.0 1.1E-52 2.3E-57 433.1 30.4 302 104-456 1-325 (325)
8 cd05485 Cathepsin_D_like Cathe 100.0 6.4E-52 1.4E-56 427.9 29.7 305 101-456 3-329 (329)
9 PTZ00165 aspartyl protease; Pr 100.0 1.3E-51 2.9E-56 441.1 33.1 308 98-462 109-451 (482)
10 cd05486 Cathespin_E Cathepsin 100.0 7.5E-52 1.6E-56 425.2 28.6 291 110-456 1-316 (316)
11 cd05477 gastricsin Gastricsins 100.0 2E-51 4.4E-56 422.3 31.2 292 107-457 1-318 (318)
12 cd06098 phytepsin Phytepsin, a 100.0 2.7E-51 5.9E-56 421.1 31.1 289 101-456 2-317 (317)
13 cd05488 Proteinase_A_fungi Fun 100.0 1.6E-51 3.5E-56 423.4 29.0 297 101-456 2-320 (320)
14 cd05487 renin_like Renin stimu 100.0 4.7E-51 1E-55 421.0 31.6 301 103-457 2-326 (326)
15 cd05475 nucellin_like Nucellin 100.0 2.5E-50 5.3E-55 405.5 30.6 260 109-459 2-273 (273)
16 cd05473 beta_secretase_like Be 100.0 3.7E-50 8E-55 420.4 32.0 313 108-464 2-352 (364)
17 PTZ00147 plasmepsin-1; Provisi 100.0 1.1E-48 2.5E-53 415.5 32.4 302 98-458 128-450 (453)
18 PTZ00013 plasmepsin 4 (PM4); P 100.0 4.4E-48 9.6E-53 410.3 33.1 302 98-458 127-449 (450)
19 cd05476 pepsin_A_like_plant Ch 100.0 2.1E-48 4.5E-53 389.8 27.8 247 109-459 1-265 (265)
20 cd06097 Aspergillopepsin_like 100.0 3.1E-47 6.8E-52 384.0 26.5 263 110-456 1-278 (278)
21 cd05474 SAP_like SAPs, pepsin- 100.0 1.3E-45 2.8E-50 375.0 27.9 267 109-457 2-295 (295)
22 PF00026 Asp: Eukaryotic aspar 100.0 2E-45 4.4E-50 376.6 22.5 296 109-457 1-317 (317)
23 cd05471 pepsin_like Pepsin-lik 100.0 1.4E-43 3E-48 356.7 27.9 265 110-456 1-283 (283)
24 PF14543 TAXi_N: Xylanase inhi 100.0 3.7E-32 8E-37 252.4 13.6 157 110-293 1-164 (164)
25 PF14541 TAXi_C: Xylanase inhi 99.9 2E-25 4.3E-30 206.9 14.3 142 313-456 1-161 (161)
26 cd05470 pepsin_retropepsin_lik 99.9 1.4E-21 3.1E-26 168.8 12.1 107 112-256 1-109 (109)
27 cd05483 retropepsin_like_bacte 97.2 0.0015 3.3E-08 54.0 7.8 29 109-139 2-30 (96)
28 cd05479 RP_DDI RP_DDI; retrope 94.4 0.33 7.2E-06 42.7 9.4 103 320-453 20-123 (124)
29 TIGR02281 clan_AA_DTGA clan AA 93.5 0.71 1.5E-05 40.4 9.6 35 312-354 10-44 (121)
30 cd05479 RP_DDI RP_DDI; retrope 90.5 2.7 5.8E-05 36.9 9.8 30 108-139 15-44 (124)
31 PF08284 RVP_2: Retroviral asp 89.9 2.1 4.4E-05 38.3 8.6 28 430-457 105-132 (135)
32 PF13650 Asp_protease_2: Aspar 89.4 3.7 8E-05 32.9 9.2 25 113-139 2-26 (90)
33 cd05484 retropepsin_like_LTR_2 88.5 0.54 1.2E-05 38.7 3.6 28 110-139 1-28 (91)
34 TIGR03698 clan_AA_DTGF clan AA 88.1 1.8 3.8E-05 37.1 6.7 24 429-452 84-107 (107)
35 PF12384 Peptidase_A2B: Ty3 tr 83.2 7.4 0.00016 35.8 8.2 21 334-354 47-67 (177)
36 TIGR02281 clan_AA_DTGA clan AA 81.3 3.1 6.7E-05 36.4 5.1 34 104-139 6-39 (121)
37 PF13650 Asp_protease_2: Aspar 81.2 2 4.4E-05 34.5 3.8 30 320-354 2-31 (90)
38 PF13975 gag-asp_proteas: gag- 77.6 3.9 8.4E-05 32.1 4.2 30 320-354 12-41 (72)
39 PF13975 gag-asp_proteas: gag- 77.0 5 0.00011 31.5 4.7 31 107-139 6-36 (72)
40 cd05484 retropepsin_like_LTR_2 76.3 3.8 8.2E-05 33.6 4.0 30 320-354 4-33 (91)
41 PF09668 Asp_protease: Asparty 74.4 13 0.00027 32.8 6.9 30 320-354 28-57 (124)
42 cd05483 retropepsin_like_bacte 73.6 5.8 0.00012 32.2 4.5 31 319-354 5-35 (96)
43 PF00077 RVP: Retroviral aspar 73.0 7 0.00015 32.4 4.9 26 112-139 8-33 (100)
44 KOG0012 DNA damage inducible p 66.6 31 0.00066 35.7 8.5 110 319-459 238-348 (380)
45 cd06095 RP_RTVL_H_like Retrope 61.9 9.6 0.00021 30.9 3.4 29 321-354 3-31 (86)
46 cd05480 NRIP_C NRIP_C; putativ 58.7 90 0.0019 26.4 8.5 33 417-449 70-103 (103)
47 cd05482 HIV_retropepsin_like R 58.4 13 0.00029 30.5 3.6 23 114-138 3-25 (87)
48 PF00077 RVP: Retroviral aspar 57.7 8.8 0.00019 31.8 2.6 28 319-351 8-35 (100)
49 cd05481 retropepsin_like_LTR_1 46.8 21 0.00045 29.6 3.1 30 321-355 3-33 (93)
50 cd06094 RP_Saci_like RP_Saci_l 46.6 64 0.0014 26.6 5.7 21 331-351 8-28 (89)
51 cd06095 RP_RTVL_H_like Retrope 45.8 27 0.00058 28.3 3.5 24 114-139 3-26 (86)
52 PF02160 Peptidase_A3: Caulifl 40.7 47 0.001 31.8 4.7 52 387-456 66-117 (201)
53 COG3577 Predicted aspartyl pro 36.9 1.6E+02 0.0034 28.3 7.5 44 93-138 89-132 (215)
54 PF09668 Asp_protease: Asparty 34.5 32 0.0007 30.3 2.4 34 109-144 24-58 (124)
55 COG3577 Predicted aspartyl pro 30.8 67 0.0015 30.8 4.0 35 312-354 104-138 (215)
56 COG5550 Predicted aspartyl pro 30.3 32 0.00069 30.1 1.7 20 335-354 29-49 (125)
57 PF12384 Peptidase_A2B: Ty3 tr 25.6 88 0.0019 28.9 3.7 27 112-138 35-61 (177)
58 cd00303 retropepsin_like Retro 23.0 1.4E+02 0.0029 22.2 4.1 21 334-354 11-31 (92)
59 PF13956 Ibs_toxin: Toxin Ibs, 23.0 47 0.001 18.8 0.9 15 1-15 1-15 (19)
No 1
>PLN03146 aspartyl protease family protein; Provisional
Probab=100.00 E-value=1.2e-66 Score=553.90 Aligned_cols=395 Identities=24% Similarity=0.429 Sum_probs=308.4
Q ss_pred HHhhccccccceEEEEeecChhhhhhhhccCCCCcccCCCCCCCcHHHHHHHhhchHHHHHHHhhhhcCCCCCCcccccc
Q 009271 14 ILLDGSDAVSFSSKLVHRFSDEAKERWISKSGNVSVADSWPKKNSVEYLELLLSNDWKRQKTRVKLQSNNNSSRNQLLFP 93 (538)
Q Consensus 14 ~~~~~~~~~~~~~~l~hr~s~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 93 (538)
+....+...+++++|+||+++++|+. + +.....+..+++++++.+|.++..... ... .+
T Consensus 15 ~~~~~~~~~~~~~~l~h~~~~~sp~~---------~----~~~~~~~~~~~~~~~~~~r~~~~~~~~-----~~~---~~ 73 (431)
T PLN03146 15 LSAAEAPKGGFTVDLIHRDSPKSPFY---------N----PSETPSQRLRNAFRRSISRVNHFRPTD-----ASP---ND 73 (431)
T ss_pred hhhccccCCceEEEEEeCCCCCCCCC---------C----CCCChhHHHHHHHHHHHHHHHHHhhcc-----ccC---Cc
Confidence 33455577889999999999998552 1 222344566666776766654432210 000 01
Q ss_pred CCCCceeeecc-ccccEEEEEEEecCCCeEEEEEEEcCCCceeEecC-CCCCCCCccccccccCCCCCCCCCCCCCCCcc
Q 009271 94 SEGSQTHFFGN-QFYWLHYTWIDIGTPNVSFLVALDAGSNLLWVPCQ-CIQCAPLSASYYTSLDRNLSEYDPSSSSSSKN 171 (538)
Q Consensus 94 ~~g~~~~~~~~-~~~~~yy~~v~iGtP~q~~~v~lDTGS~~~Wv~c~-C~~C~~~~~~~~~~~~~~~~~f~ps~SsT~~~ 171 (538)
+..+. ..+..|+++|.||||||++.|++||||+++||+|. |..|.++. .+.|||++|+||+.
T Consensus 74 ------~~~~~~~~~~~Y~v~i~iGTPpq~~~vi~DTGS~l~Wv~C~~C~~C~~~~----------~~~fdps~SST~~~ 137 (431)
T PLN03146 74 ------PQSDLISNGGEYLMNISIGTPPVPILAIADTGSDLIWTQCKPCDDCYKQV----------SPLFDPKKSSTYKD 137 (431)
T ss_pred ------cccCcccCCccEEEEEEcCCCCceEEEEECCCCCcceEcCCCCcccccCC----------CCcccCCCCCCCcc
Confidence 11111 22457999999999999999999999999999998 99998653 47999999999999
Q ss_pred ccCCCCCCCCCC---CCCCCCCCCceeEecCCCCceEEEEEEEEEEEeccCCCCCCCccccccEEEEEEEeecCCCCCCC
Q 009271 172 VSCSHPLCKSRS---SCKSLKDPCPYIADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIGCGRKQTGSYLDGA 248 (538)
Q Consensus 172 ~~C~~~~C~~~~---~C~~~~~~c~y~~~Y~dg~ss~~G~l~~D~v~l~~~~~~~~~~~~~~~~~fGc~~~~~g~~~~~~ 248 (538)
++|+++.|.... .|... +.|.|.+.|+|| +.+.|++++|+|+|++..+.. ...+++.|||++.+.|.|..
T Consensus 138 ~~C~s~~C~~~~~~~~c~~~-~~c~y~i~Ygdg-s~~~G~l~~Dtltlg~~~~~~---~~v~~~~FGc~~~~~g~f~~-- 210 (431)
T PLN03146 138 VSCDSSQCQALGNQASCSDE-NTCTYSYSYGDG-SFTKGNLAVETLTIGSTSGRP---VSFPGIVFGCGHNNGGTFDE-- 210 (431)
T ss_pred cCCCCcccccCCCCCCCCCC-CCCeeEEEeCCC-CceeeEEEEEEEEeccCCCCc---ceeCCEEEeCCCCCCCCccC--
Confidence 999999998642 37553 469999999996 778999999999998753211 23679999999998887742
Q ss_pred CCceEEeeCCCCCChHHHHHhcCCCCCceEEeecC-----CCCccEEeCCCCCC---CceeeeeeecCCCCceEEEeEeE
Q 009271 249 APDGVMGLGLGDVSVPSLLAKAGLIQNSFSICFDE-----NDSGSVFFGDQGPA---TQQSTSFLPIGEKYDAYFVGVES 320 (538)
Q Consensus 249 ~~dGIlGLG~~~~Sl~sqL~~~g~i~~~FS~cl~~-----~~~G~l~fG~~d~~---~~~~tplv~~~~~~~~y~V~l~~ 320 (538)
..+||||||++++|+++||... ++++|||||.+ ...|.|+||+.... ...+||++.... +.+|+|+|++
T Consensus 211 ~~~GilGLG~~~~Sl~sql~~~--~~~~FSycL~~~~~~~~~~g~l~fG~~~~~~~~~~~~tPl~~~~~-~~~y~V~L~g 287 (431)
T PLN03146 211 KGSGIVGLGGGPLSLISQLGSS--IGGKFSYCLVPLSSDSNGTSKINFGTNAIVSGSGVVSTPLVSKDP-DTFYYLTLEA 287 (431)
T ss_pred CCceeEecCCCCccHHHHhhHh--hCCcEEEECCCCCCCCCCcceEEeCCccccCCCCceEcccccCCC-CCeEEEeEEE
Confidence 4699999999999999999853 66799999964 23699999985422 256899986533 4799999999
Q ss_pred EEECCeEeecCC--------ceEEEcCCCccccccHHHHHHHHHHHHHhhcccccccccccccccccccccccccCccEE
Q 009271 321 YCIGNSCLTQSG--------FQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMR 392 (538)
Q Consensus 321 i~Vgg~~l~~~~--------~~aiiDSGTs~t~LP~~~y~~l~~~~~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~it 392 (538)
|+||++++.... .++||||||++|+||+++|++|.++|.+++...+.......++.||+.... ..+|+|+
T Consensus 288 IsVgg~~l~~~~~~~~~~~~g~~iiDSGTt~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~--~~~P~i~ 365 (431)
T PLN03146 288 ISVGSKKLPYTGSSKNGVEEGNIIIDSGTTLTLLPSDFYSELESAVEEAIGGERVSDPQGLLSLCYSSTSD--IKLPIIT 365 (431)
T ss_pred EEECCEECcCCccccccCCCCcEEEeCCccceecCHHHHHHHHHHHHHHhccccCCCCCCCCCccccCCCC--CCCCeEE
Confidence 999999886422 369999999999999999999999999988754433333346789985432 4789999
Q ss_pred EEEcCCeeeeeecceeEEeecCCcceEEEEEEecCCCceeEcceeeeeeEEEEeCCCCEEEEeecCCCc
Q 009271 393 LIFSKNQSFVVRNHIFSFPENEGFTVFCLTVMSTDGDYGIIGQNFMMGHRIVFDRENLKLAWSHSKCEE 461 (538)
Q Consensus 393 ~~f~gg~~~~v~~~~y~~~~~~~~~~~Cl~i~~~~~~~~IlG~~fl~~~yvVFD~e~~rIGfa~~~C~~ 461 (538)
|+|+ |+++.+++.+|++...+ +.+|+++.... +.+|||+.|||++|||||++++||||++.+|.+
T Consensus 366 ~~F~-Ga~~~l~~~~~~~~~~~--~~~Cl~~~~~~-~~~IlG~~~q~~~~vvyDl~~~~igFa~~~C~~ 430 (431)
T PLN03146 366 AHFT-GADVKLQPLNTFVKVSE--DLVCFAMIPTS-SIAIFGNLAQMNFLVGYDLESKTVSFKPTDCTK 430 (431)
T ss_pred EEEC-CCeeecCcceeEEEcCC--CcEEEEEecCC-CceEECeeeEeeEEEEEECCCCEEeeecCCcCc
Confidence 9995 68899999999987654 57899998764 469999999999999999999999999999975
No 2
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.7e-57 Score=475.61 Aligned_cols=334 Identities=33% Similarity=0.570 Sum_probs=278.1
Q ss_pred cccccEEEEEEEecCCCeEEEEEEEcCCCceeEecC-CC-CCCCCccccccccCCCCCCCCCCCCCCCccccCCCCCCCC
Q 009271 104 NQFYWLHYTWIDIGTPNVSFLVALDAGSNLLWVPCQ-CI-QCAPLSASYYTSLDRNLSEYDPSSSSSSKNVSCSHPLCKS 181 (538)
Q Consensus 104 ~~~~~~yy~~v~iGtP~q~~~v~lDTGS~~~Wv~c~-C~-~C~~~~~~~~~~~~~~~~~f~ps~SsT~~~~~C~~~~C~~ 181 (538)
.+....||++|.||||||.|.|++||||+++||+|. |. .|..+. .+.|+|++||||+.+.|.+..|..
T Consensus 41 ~~~~~~Y~~~i~IGTPpq~f~v~~DTGS~~lWV~c~~c~~~C~~~~----------~~~f~p~~SSt~~~~~c~~~~c~~ 110 (398)
T KOG1339|consen 41 SYSSGEYYGNISIGTPPQSFTVVLDTGSDLLWVPCAPCSSACYSQH----------NPIFDPSASSTYKSVGCSSPRCKS 110 (398)
T ss_pred cccccccEEEEecCCCCeeeEEEEeCCCCceeeccccccccccccC----------CCccCccccccccccCCCCccccc
Confidence 445568999999999999999999999999999998 98 787643 245999999999999999999999
Q ss_pred CCCCCCCCCCCceeEecCCCCceEEEEEEEEEEEeccCCCCCCCccccccEEEEEEEeecCCCCCC-CCCceEEeeCCCC
Q 009271 182 RSSCKSLKDPCPYIADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIGCGRKQTGSYLDG-AAPDGVMGLGLGD 260 (538)
Q Consensus 182 ~~~C~~~~~~c~y~~~Y~dg~ss~~G~l~~D~v~l~~~~~~~~~~~~~~~~~fGc~~~~~g~~~~~-~~~dGIlGLG~~~ 260 (538)
...|..+++.|.|.+.|+|+ ++++|.+++|+|+|++.+. ...+++.|||+..+.|. ... .+.|||||||+++
T Consensus 111 ~~~~~~~~~~C~y~i~Ygd~-~~~~G~l~~Dtv~~~~~~~-----~~~~~~~FGc~~~~~g~-~~~~~~~dGIlGLg~~~ 183 (398)
T KOG1339|consen 111 LPQSCSPNSSCPYSIQYGDG-SSTSGYLATDTVTFGGTTS-----LPVPNQTFGCGTNNPGS-FGLFAAFDGILGLGRGS 183 (398)
T ss_pred cccCcccCCcCceEEEeCCC-CceeEEEEEEEEEEccccc-----cccccEEEEeeecCccc-cccccccceEeecCCCC
Confidence 86666667789999999996 6899999999999998531 23578999999999886 222 4789999999999
Q ss_pred CChHHHHHhcCCCCCceEEeecCC-----CCccEEeCCCCCCCce----eeeeeecCCCCceEEEeEeEEEECCeE----
Q 009271 261 VSVPSLLAKAGLIQNSFSICFDEN-----DSGSVFFGDQGPATQQ----STSFLPIGEKYDAYFVGVESYCIGNSC---- 327 (538)
Q Consensus 261 ~Sl~sqL~~~g~i~~~FS~cl~~~-----~~G~l~fG~~d~~~~~----~tplv~~~~~~~~y~V~l~~i~Vgg~~---- 327 (538)
+|+++|+.......++||+||.++ ..|.|+||+.|...+. ||||+.... .+|+|++++|.||++.
T Consensus 184 ~S~~~q~~~~~~~~~~FS~cL~~~~~~~~~~G~i~fG~~d~~~~~~~l~~tPl~~~~~--~~y~v~l~~I~vgg~~~~~~ 261 (398)
T KOG1339|consen 184 LSVPSQLPSFYNAINVFSYCLSSNGSPSSGGGSIIFGGVDSSHYTGSLTYTPLLSNPS--TYYQVNLDGISVGGKRPIGS 261 (398)
T ss_pred ccceeecccccCCceeEEEEeCCCCCCCCCCcEEEECCCcccCcCCceEEEeeccCCC--ccEEEEEeEEEECCccCCCc
Confidence 999999998777667999999875 3799999999998653 899976543 5999999999999843
Q ss_pred --eecCCceEEEcCCCccccccHHHHHHHHHHHHHhhcccccccccccccccccccccccccCccEEEEEcCCeeeeeec
Q 009271 328 --LTQSGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMRLIFSKNQSFVVRN 405 (538)
Q Consensus 328 --l~~~~~~aiiDSGTs~t~LP~~~y~~l~~~~~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~it~~f~gg~~~~v~~ 405 (538)
......++||||||++|+||+++|++|.++|.+++.. ....+..+..||...... ..+|.|+|+|.+|+.|.+++
T Consensus 262 ~~~~~~~~~~iiDSGTs~t~lp~~~y~~i~~~~~~~~~~--~~~~~~~~~~C~~~~~~~-~~~P~i~~~f~~g~~~~l~~ 338 (398)
T KOG1339|consen 262 SLFCTDGGGAIIDSGTSLTYLPTSAYNALREAIGAEVSV--VGTDGEYFVPCFSISTSG-VKLPDITFHFGGGAVFSLPP 338 (398)
T ss_pred ceEecCCCCEEEECCcceeeccHHHHHHHHHHHHhheec--cccCCceeeecccCCCCc-ccCCcEEEEECCCcEEEeCc
Confidence 2223478999999999999999999999999987511 111223556899876433 45899999997789999999
Q ss_pred ceeEEeecCCcceEEEEEEecCC--CceeEcceeeeeeEEEEeCC-CCEEEEee--cCCC
Q 009271 406 HIFSFPENEGFTVFCLTVMSTDG--DYGIIGQNFMMGHRIVFDRE-NLKLAWSH--SKCE 460 (538)
Q Consensus 406 ~~y~~~~~~~~~~~Cl~i~~~~~--~~~IlG~~fl~~~yvVFD~e-~~rIGfa~--~~C~ 460 (538)
++|++...++... |+++..... ..||||+.||++++++||+. ++||||++ .+|.
T Consensus 339 ~~y~~~~~~~~~~-Cl~~~~~~~~~~~~ilG~~~~~~~~~~~D~~~~~riGfa~~~~~c~ 397 (398)
T KOG1339|consen 339 KNYLVEVSDGGGV-CLAFFNGMDSGPLWILGDVFQQNYLVVFDLGENSRVGFAPALTNCS 397 (398)
T ss_pred cceEEEECCCCCc-eeeEEecCCCCceEEEchHHhCCEEEEEeCCCCCEEEeccccccCC
Confidence 9999987653122 998777643 37999999999999999999 99999999 7774
No 3
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami
Probab=100.00 E-value=6.1e-54 Score=437.33 Aligned_cols=287 Identities=27% Similarity=0.488 Sum_probs=240.2
Q ss_pred EEEEEEEecCCCeEEEEEEEcCCCceeEecCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCC
Q 009271 109 LHYTWIDIGTPNVSFLVALDAGSNLLWVPCQCIQCAPLSASYYTSLDRNLSEYDPSSSSSSKNVSCSHPLCKSRSSCKSL 188 (538)
Q Consensus 109 ~yy~~v~iGtP~q~~~v~lDTGS~~~Wv~c~C~~C~~~~~~~~~~~~~~~~~f~ps~SsT~~~~~C~~~~C~~~~~C~~~ 188 (538)
.||++|.||||||++.|++||||+++||+|. .|
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~c~--~c--------------------------------------------- 33 (299)
T cd05472 1 EYVVTVGLGTPARDQTVIVDTGSDLTWVQCQ--PC--------------------------------------------- 33 (299)
T ss_pred CeEEEEecCCCCcceEEEecCCCCcccccCC--CC---------------------------------------------
Confidence 3899999999999999999999999999873 11
Q ss_pred CCCCceeEecCCCCceEEEEEEEEEEEeccCCCCCCCccccccEEEEEEEeecCCCCCCCCCceEEeeCCCCCChHHHHH
Q 009271 189 KDPCPYIADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVSVPSLLA 268 (538)
Q Consensus 189 ~~~c~y~~~Y~dg~ss~~G~l~~D~v~l~~~~~~~~~~~~~~~~~fGc~~~~~g~~~~~~~~dGIlGLG~~~~Sl~sqL~ 268 (538)
|.|.++|++| +.++|.+++|+|+|++. ...+++.|||++.+++.+. ..+||||||+..+|+++||.
T Consensus 34 ---~~~~i~Yg~G-s~~~G~~~~D~v~ig~~-------~~~~~~~Fg~~~~~~~~~~---~~~GilGLg~~~~s~~~ql~ 99 (299)
T cd05472 34 ---CLYQVSYGDG-SYTTGDLATDTLTLGSS-------DVVPGFAFGCGHDNEGLFG---GAAGLLGLGRGKLSLPSQTA 99 (299)
T ss_pred ---CeeeeEeCCC-ceEEEEEEEEEEEeCCC-------CccCCEEEECCccCCCccC---CCCEEEECCCCcchHHHHhh
Confidence 6899999986 67799999999999874 1357899999998887663 57999999999999999998
Q ss_pred hcCCCCCceEEeecC---CCCccEEeCCCCCC--CceeeeeeecCCCCceEEEeEeEEEECCeEeec-----CCceEEEc
Q 009271 269 KAGLIQNSFSICFDE---NDSGSVFFGDQGPA--TQQSTSFLPIGEKYDAYFVGVESYCIGNSCLTQ-----SGFQALVD 338 (538)
Q Consensus 269 ~~g~i~~~FS~cl~~---~~~G~l~fG~~d~~--~~~~tplv~~~~~~~~y~V~l~~i~Vgg~~l~~-----~~~~aiiD 338 (538)
.+ .+++||+||.+ ...|+|+||++|+. ...|+|++.......+|.|+|++|+||++.+.. ....+|||
T Consensus 100 ~~--~~~~FS~~L~~~~~~~~G~l~fGg~d~~~g~l~~~pv~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~ivD 177 (299)
T cd05472 100 SS--YGGVFSYCLPDRSSSSSGYLSFGAAASVPAGASFTPMLSNPRVPTFYYVGLTGISVGGRRLPIPPASFGAGGVIID 177 (299)
T ss_pred Hh--hcCceEEEccCCCCCCCceEEeCCccccCCCceECCCccCCCCCCeEEEeeEEEEECCEECCCCccccCCCCeEEe
Confidence 65 56899999986 45799999999984 567999987654457999999999999998863 24579999
Q ss_pred CCCccccccHHHHHHHHHHHHHhhcccccccccccccccccccccccccCccEEEEEcCCeeeeeecceeEEeecCCcce
Q 009271 339 SGASFTFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMRLIFSKNQSFVVRNHIFSFPENEGFTV 418 (538)
Q Consensus 339 SGTs~t~LP~~~y~~l~~~~~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~it~~f~gg~~~~v~~~~y~~~~~~~~~~ 418 (538)
|||++++||+++|++|.+++.+++...........++.||+.++.....+|+|+|+|+|+..+.+++++|++....+ +.
T Consensus 178 SGTt~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~~g~~~~l~~~~y~~~~~~~-~~ 256 (299)
T cd05472 178 SGTVITRLPPSAYAALRDAFRAAMAAYPRAPGFSILDTCYDLSGFRSVSVPTVSLHFQGGADVELDASGVLYPVDDS-SQ 256 (299)
T ss_pred CCCcceecCHHHHHHHHHHHHHHhccCCCCCCCCCCCccCcCCCCcCCccCCEEEEECCCCEEEeCcccEEEEecCC-CC
Confidence 99999999999999999999887643221112223456998877656689999999976899999999999843332 67
Q ss_pred EEEEEEecC--CCceeEcceeeeeeEEEEeCCCCEEEEeecCC
Q 009271 419 FCLTVMSTD--GDYGIIGQNFMMGHRIVFDRENLKLAWSHSKC 459 (538)
Q Consensus 419 ~Cl~i~~~~--~~~~IlG~~fl~~~yvVFD~e~~rIGfa~~~C 459 (538)
+|+++...+ ...+|||+.|||++|+|||++++|||||+++|
T Consensus 257 ~C~~~~~~~~~~~~~ilG~~fl~~~~vvfD~~~~~igfa~~~C 299 (299)
T cd05472 257 VCLAFAGTSDDGGLSIIGNVQQQTFRVVYDVAGGRIGFAPGGC 299 (299)
T ss_pred EEEEEeCCCCCCCCEEEchHHccceEEEEECCCCEEeEecCCC
Confidence 999988763 35799999999999999999999999999999
No 4
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=100.00 E-value=1.1e-53 Score=440.60 Aligned_cols=300 Identities=25% Similarity=0.432 Sum_probs=244.7
Q ss_pred cEEEEEEEecCCCeEEEEEEEcCCCceeEecC-CCCCCCCccccccccCCCCCCCCCCCCCCCccccCCCCCCCCCCCCC
Q 009271 108 WLHYTWIDIGTPNVSFLVALDAGSNLLWVPCQ-CIQCAPLSASYYTSLDRNLSEYDPSSSSSSKNVSCSHPLCKSRSSCK 186 (538)
Q Consensus 108 ~~yy~~v~iGtP~q~~~v~lDTGS~~~Wv~c~-C~~C~~~~~~~~~~~~~~~~~f~ps~SsT~~~~~C~~~~C~~~~~C~ 186 (538)
.+||++|.||||+|++.|+|||||+++||+|. |..|..+. .+.|+|++|+|++.+.|++..|.....|.
T Consensus 2 ~~Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~C~~c~~~~----------~~~y~~~~Sst~~~~~C~~~~c~~~~~~~ 71 (326)
T cd06096 2 AYYFIDIFIGNPPQKQSLILDTGSSSLSFPCSQCKNCGIHM----------EPPYNLNNSITSSILYCDCNKCCYCLSCL 71 (326)
T ss_pred ceEEEEEEecCCCeEEEEEEeCCCCceEEecCCCCCcCCCC----------CCCcCcccccccccccCCCccccccCcCC
Confidence 37999999999999999999999999999998 99997543 46899999999999999999997666665
Q ss_pred CCCCCCceeEecCCCCceEEEEEEEEEEEeccCCCCCCCccccccEEEEEEEeecCCCCCCCCCceEEeeCCCCCC----
Q 009271 187 SLKDPCPYIADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVS---- 262 (538)
Q Consensus 187 ~~~~~c~y~~~Y~dg~ss~~G~l~~D~v~l~~~~~~~~~~~~~~~~~fGc~~~~~g~~~~~~~~dGIlGLG~~~~S---- 262 (538)
+ +.|.|.+.|++| +.+.|.+++|+|+|++..... ......++.|||+..+.+.|..+ ..|||||||+...+
T Consensus 72 ~--~~~~~~i~Y~~g-s~~~G~~~~D~v~lg~~~~~~-~~~~~~~~~fg~~~~~~~~~~~~-~~~GilGLg~~~~~~~~~ 146 (326)
T cd06096 72 N--NKCEYSISYSEG-SSISGFYFSDFVSFESYLNSN-SEKESFKKIFGCHTHETNLFLTQ-QATGILGLSLTKNNGLPT 146 (326)
T ss_pred C--CcCcEEEEECCC-CceeeEEEEEEEEeccCCCCc-cccccccEEeccCccccCccccc-ccceEEEccCCcccccCc
Confidence 4 569999999996 778999999999998753210 00123468999999988877544 57999999998742
Q ss_pred hHHHHHhcCCC---CCceEEeecCCCCccEEeCCCCCCCc--------------eeeeeeecCCCCceEEEeEeEEEECC
Q 009271 263 VPSLLAKAGLI---QNSFSICFDENDSGSVFFGDQGPATQ--------------QSTSFLPIGEKYDAYFVGVESYCIGN 325 (538)
Q Consensus 263 l~sqL~~~g~i---~~~FS~cl~~~~~G~l~fG~~d~~~~--------------~~tplv~~~~~~~~y~V~l~~i~Vgg 325 (538)
...+|.+++.+ +++||+||+++ .|.|+||++|+.++ .|+|+.. ..+|.|++++|.||+
T Consensus 147 ~~~~l~~~~~~~~~~~~FS~~l~~~-~G~l~~Gg~d~~~~~~~~~~~~~~~~~~~~~p~~~----~~~y~v~l~~i~vg~ 221 (326)
T cd06096 147 PIILLFTKRPKLKKDKIFSICLSED-GGELTIGGYDKDYTVRNSSIGNNKVSKIVWTPITR----KYYYYVKLEGLSVYG 221 (326)
T ss_pred hhHHHHHhcccccCCceEEEEEcCC-CeEEEECccChhhhcccccccccccCCceEEeccC----CceEEEEEEEEEEcc
Confidence 22235555544 28999999975 79999999987543 4777753 268999999999999
Q ss_pred eE---eecCCceEEEcCCCccccccHHHHHHHHHHHHHhhcccccccccccccccccccccccccCccEEEEEcCCeeee
Q 009271 326 SC---LTQSGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMRLIFSKNQSFV 402 (538)
Q Consensus 326 ~~---l~~~~~~aiiDSGTs~t~LP~~~y~~l~~~~~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~it~~f~gg~~~~ 402 (538)
+. .......+||||||++++||+++|++|.+++ |+|+|+|.+|.++.
T Consensus 222 ~~~~~~~~~~~~aivDSGTs~~~lp~~~~~~l~~~~------------------------------P~i~~~f~~g~~~~ 271 (326)
T cd06096 222 TTSNSGNTKGLGMLVDSGSTLSHFPEDLYNKINNFF------------------------------PTITIIFENNLKID 271 (326)
T ss_pred cccceecccCCCEEEeCCCCcccCCHHHHHHHHhhc------------------------------CcEEEEEcCCcEEE
Confidence 86 2235667999999999999999999998655 89999997689999
Q ss_pred eecceeEEeecCCcceEEEEEEecCCCceeEcceeeeeeEEEEeCCCCEEEEeecCCC
Q 009271 403 VRNHIFSFPENEGFTVFCLTVMSTDGDYGIIGQNFMMGHRIVFDRENLKLAWSHSKCE 460 (538)
Q Consensus 403 v~~~~y~~~~~~~~~~~Cl~i~~~~~~~~IlG~~fl~~~yvVFD~e~~rIGfa~~~C~ 460 (538)
+++++|++.... ...|+++... ++.+|||++|||++|+|||+|++|||||+++|.
T Consensus 272 i~p~~y~~~~~~--~~c~~~~~~~-~~~~ILG~~flr~~y~vFD~~~~riGfa~~~C~ 326 (326)
T cd06096 272 WKPSSYLYKKES--FWCKGGEKSV-SNKPILGASFFKNKQIIFDLDNNRIGFVESNCP 326 (326)
T ss_pred ECHHHhccccCC--ceEEEEEecC-CCceEEChHHhcCcEEEEECcCCEEeeEcCCCC
Confidence 999999987643 2345665544 368999999999999999999999999999993
No 5
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall. Xylanase inhibitor-I (TAXI-I) is a member of potent TAXI-type inhibitors of fungal and bacterial family 11 xylanases. Plants developed a diverse battery of defense mechanisms in response to continual challenges by a broad spectrum of pathogenic microorganisms. Their defense arsenal includes inhibitors of cell wall-degrading enzymes, which hinder a possible invasion and colonization by antagonists. Xylanases of fungal and bacterial pathogens are the key enzymes in the degradation of xylan in the cell wall. Plants secrete proteins that inhibit these degradation glycosidases, including xylanase. Surprisingly, TAXI-I displays structural homology with the pepsin-like family of aspartic proteases but is proteolytically nonfunctional, because one or more residues of the essential catalytic triad are absent. The structure of the TAXI-inhibitor, Aspergillus niger xylanase I complex, illustrates the ability
Probab=100.00 E-value=3.8e-53 Score=440.95 Aligned_cols=313 Identities=23% Similarity=0.363 Sum_probs=249.6
Q ss_pred ecCCCeE-EEEEEEcCCCceeEecCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCCCCCCCCC-----------
Q 009271 116 IGTPNVS-FLVALDAGSNLLWVPCQCIQCAPLSASYYTSLDRNLSEYDPSSSSSSKNVSCSHPLCKSRS----------- 183 (538)
Q Consensus 116 iGtP~q~-~~v~lDTGS~~~Wv~c~C~~C~~~~~~~~~~~~~~~~~f~ps~SsT~~~~~C~~~~C~~~~----------- 183 (538)
+|||-.+ |.|++||||+++||+|. |.+|+||+.++|+++.|....
T Consensus 2 ~~~~~~~~~~~~~DTGS~l~WvqC~-----------------------~~~sst~~~~~C~s~~C~~~~~~~~~~~~~~~ 58 (362)
T cd05489 2 TITPLKGAVPLVLDLAGPLLWSTCD-----------------------AGHSSTYQTVPCSSSVCSLANRYHCPGTCGGA 58 (362)
T ss_pred cccCccCCeeEEEECCCCceeeeCC-----------------------CCCcCCCCccCcCChhhccccccCCCccccCC
Confidence 5788777 99999999999999983 346889999999999998531
Q ss_pred ---CCCCCCCCCceeEe-cCCCCceEEEEEEEEEEEeccCCCCCCCccccccEEEEEEEeecCCCCCCCCCceEEeeCCC
Q 009271 184 ---SCKSLKDPCPYIAD-YSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLG 259 (538)
Q Consensus 184 ---~C~~~~~~c~y~~~-Y~dg~ss~~G~l~~D~v~l~~~~~~~~~~~~~~~~~fGc~~~~~g~~~~~~~~dGIlGLG~~ 259 (538)
.|.+ +.|.|... |++| +.+.|+|++|+|+|+..++.......++++.|||++++...... ...|||||||++
T Consensus 59 ~~~~c~~--~~C~y~~~~y~~g-s~t~G~l~~Dtl~~~~~~g~~~~~~~~~~~~FGC~~~~~~~~~~-~~~dGIlGLg~~ 134 (362)
T cd05489 59 PGPGCGN--NTCTAHPYNPVTG-ECATGDLTQDVLSANTTDGSNPLLVVIFNFVFSCAPSLLLKGLP-PGAQGVAGLGRS 134 (362)
T ss_pred CCCCCCC--CcCeeEccccccC-cEeeEEEEEEEEEecccCCCCcccceeCCEEEEcCCcccccCCc-cccccccccCCC
Confidence 3433 35988665 7775 78999999999999864322100024689999999886432111 147999999999
Q ss_pred CCChHHHHHhcCCCCCceEEeecCC--CCccEEeCCCCC----------CCceeeeeeecCCCCceEEEeEeEEEECCeE
Q 009271 260 DVSVPSLLAKAGLIQNSFSICFDEN--DSGSVFFGDQGP----------ATQQSTSFLPIGEKYDAYFVGVESYCIGNSC 327 (538)
Q Consensus 260 ~~Sl~sqL~~~g~i~~~FS~cl~~~--~~G~l~fG~~d~----------~~~~~tplv~~~~~~~~y~V~l~~i~Vgg~~ 327 (538)
++|+++||..++.+.++|||||.++ ..|.|+||+.+. ..+.||||+..+..+.+|+|+|++|+||+++
T Consensus 135 ~lSl~sql~~~~~~~~~FS~CL~~~~~~~g~l~fG~~~~~~~~~~~~~~~~~~~tPl~~~~~~~~~Y~v~l~~IsVg~~~ 214 (362)
T cd05489 135 PLSLPAQLASAFGVARKFALCLPSSPGGPGVAIFGGGPYYLFPPPIDLSKSLSYTPLLTNPRKSGEYYIGVTSIAVNGHA 214 (362)
T ss_pred ccchHHHhhhhcCCCcceEEEeCCCCCCCeeEEECCCchhcccccccccCCccccccccCCCCCCceEEEEEEEEECCEE
Confidence 9999999998766679999999864 579999999885 3457999987654457999999999999998
Q ss_pred eecC----------CceEEEcCCCccccccHHHHHHHHHHHHHhhccccccccc-ccccccccccc----cccccCccEE
Q 009271 328 LTQS----------GFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQG-NSWKYCYNASS----EEMLKVPDMR 392 (538)
Q Consensus 328 l~~~----------~~~aiiDSGTs~t~LP~~~y~~l~~~~~~~~~~~~~~~~~-~~~~~Cy~~~~----~~~~~~P~it 392 (538)
+... ..++||||||++|+||+++|++|.++|.+++...+..... ..++.||+... .....+|+|+
T Consensus 215 l~~~~~~~~~~~~~~~g~iiDSGTs~t~lp~~~y~~l~~a~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~it 294 (362)
T cd05489 215 VPLNPTLSANDRLGPGGVKLSTVVPYTVLRSDIYRAFTQAFAKATARIPRVPAAAVFPELCYPASALGNTRLGYAVPAID 294 (362)
T ss_pred CCCCchhccccccCCCcEEEecCCceEEECHHHHHHHHHHHHHHhcccCcCCCCCCCcCccccCCCcCCcccccccceEE
Confidence 8631 3479999999999999999999999999888654332221 22368998643 2245799999
Q ss_pred EEEcC-CeeeeeecceeEEeecCCcceEEEEEEecC---CCceeEcceeeeeeEEEEeCCCCEEEEeec
Q 009271 393 LIFSK-NQSFVVRNHIFSFPENEGFTVFCLTVMSTD---GDYGIIGQNFMMGHRIVFDRENLKLAWSHS 457 (538)
Q Consensus 393 ~~f~g-g~~~~v~~~~y~~~~~~~~~~~Cl~i~~~~---~~~~IlG~~fl~~~yvVFD~e~~rIGfa~~ 457 (538)
|+|+| |++|.|++++|+++..+ +.+||+|+..+ +..||||+.||++||+|||++++||||+++
T Consensus 295 ~~f~g~g~~~~l~~~ny~~~~~~--~~~Cl~f~~~~~~~~~~~IlG~~~~~~~~vvyD~~~~riGfa~~ 361 (362)
T cd05489 295 LVLDGGGVNWTIFGANSMVQVKG--GVACLAFVDGGSEPRPAVVIGGHQMEDNLLVFDLEKSRLGFSSS 361 (362)
T ss_pred EEEeCCCeEEEEcCCceEEEcCC--CcEEEEEeeCCCCCCceEEEeeheecceEEEEECCCCEeecccC
Confidence 99987 89999999999998654 57999998865 347999999999999999999999999975
No 6
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals. Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which
Probab=100.00 E-value=8.4e-53 Score=432.42 Aligned_cols=299 Identities=24% Similarity=0.380 Sum_probs=247.4
Q ss_pred eeccccccEEEEEEEecCCCeEEEEEEEcCCCceeEecC-CCCCCCCccccccccCCCCCCCCCCCCCCCccccCCCCCC
Q 009271 101 FFGNQFYWLHYTWIDIGTPNVSFLVALDAGSNLLWVPCQ-CIQCAPLSASYYTSLDRNLSEYDPSSSSSSKNVSCSHPLC 179 (538)
Q Consensus 101 ~~~~~~~~~yy~~v~iGtP~q~~~v~lDTGS~~~Wv~c~-C~~C~~~~~~~~~~~~~~~~~f~ps~SsT~~~~~C~~~~C 179 (538)
++.|+.+..||++|.||||+|++.|+|||||+++||+|. |..|.- ...+.|+|++|+|++..
T Consensus 2 ~l~n~~~~~Y~~~i~vGtp~q~~~v~~DTGS~~~wv~~~~C~~~~c----------~~~~~f~~~~Sst~~~~------- 64 (317)
T cd05478 2 PLTNYLDMEYYGTISIGTPPQDFTVIFDTGSSNLWVPSVYCSSQAC----------SNHNRFNPRQSSTYQST------- 64 (317)
T ss_pred ccccccCCEEEEEEEeCCCCcEEEEEEeCCCccEEEecCCCCcccc----------cccCcCCCCCCcceeeC-------
Confidence 356888999999999999999999999999999999997 864321 13469999999999964
Q ss_pred CCCCCCCCCCCCCceeEecCCCCceEEEEEEEEEEEeccCCCCCCCccccccEEEEEEEeecCCCCCCCCCceEEeeCCC
Q 009271 180 KSRSSCKSLKDPCPYIADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLG 259 (538)
Q Consensus 180 ~~~~~C~~~~~~c~y~~~Y~dg~ss~~G~l~~D~v~l~~~~~~~~~~~~~~~~~fGc~~~~~g~~~~~~~~dGIlGLG~~ 259 (538)
.|.|.+.|++| + +.|.+++|+|+|++. ..+++.|||++...+.+......|||||||+.
T Consensus 65 -----------~~~~~~~yg~g-s-~~G~~~~D~v~ig~~--------~i~~~~fg~~~~~~~~~~~~~~~dGilGLg~~ 123 (317)
T cd05478 65 -----------GQPLSIQYGTG-S-MTGILGYDTVQVGGI--------SDTNQIFGLSETEPGSFFYYAPFDGILGLAYP 123 (317)
T ss_pred -----------CcEEEEEECCc-e-EEEEEeeeEEEECCE--------EECCEEEEEEEecCccccccccccceeeeccc
Confidence 37899999986 4 799999999999874 35789999998887766544457999999987
Q ss_pred CC------ChHHHHHhcCCCC-CceEEeecCC--CCccEEeCCCCCCCc----eeeeeeecCCCCceEEEeEeEEEECCe
Q 009271 260 DV------SVPSLLAKAGLIQ-NSFSICFDEN--DSGSVFFGDQGPATQ----QSTSFLPIGEKYDAYFVGVESYCIGNS 326 (538)
Q Consensus 260 ~~------Sl~sqL~~~g~i~-~~FS~cl~~~--~~G~l~fG~~d~~~~----~~tplv~~~~~~~~y~V~l~~i~Vgg~ 326 (538)
.+ +++++|+++|+|+ ++||+||.++ ..|.|+||++|+.++ .|+|+.. ..+|.|.+++|.||++
T Consensus 124 ~~s~~~~~~~~~~L~~~g~i~~~~FS~~L~~~~~~~g~l~~Gg~d~~~~~g~l~~~p~~~----~~~w~v~l~~v~v~g~ 199 (317)
T cd05478 124 SIASSGATPVFDNMMSQGLVSQDLFSVYLSSNGQQGSVVTFGGIDPSYYTGSLNWVPVTA----ETYWQITVDSVTINGQ 199 (317)
T ss_pred hhcccCCCCHHHHHHhCCCCCCCEEEEEeCCCCCCCeEEEEcccCHHHccCceEEEECCC----CcEEEEEeeEEEECCE
Confidence 54 4889999999997 9999999876 368999999998754 4777742 3799999999999999
Q ss_pred Eeec-CCceEEEcCCCccccccHHHHHHHHHHHHHhhcccccccccccccccccccccccccCccEEEEEcCCeeeeeec
Q 009271 327 CLTQ-SGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMRLIFSKNQSFVVRN 405 (538)
Q Consensus 327 ~l~~-~~~~aiiDSGTs~t~LP~~~y~~l~~~~~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~it~~f~gg~~~~v~~ 405 (538)
.+.. ....+||||||++++||+++|++|.+++..... . ..+|..+|.....+|.|+|+| +|..|.|++
T Consensus 200 ~~~~~~~~~~iiDTGts~~~lp~~~~~~l~~~~~~~~~-----~-----~~~~~~~C~~~~~~P~~~f~f-~g~~~~i~~ 268 (317)
T cd05478 200 VVACSGGCQAIVDTGTSLLVGPSSDIANIQSDIGASQN-----Q-----NGEMVVNCSSISSMPDVVFTI-NGVQYPLPP 268 (317)
T ss_pred EEccCCCCEEEECCCchhhhCCHHHHHHHHHHhCCccc-----c-----CCcEEeCCcCcccCCcEEEEE-CCEEEEECH
Confidence 9863 345799999999999999999999987754221 0 124555665555789999999 679999999
Q ss_pred ceeEEeecCCcceEEE-EEEecC-CCceeEcceeeeeeEEEEeCCCCEEEEee
Q 009271 406 HIFSFPENEGFTVFCL-TVMSTD-GDYGIIGQNFMMGHRIVFDRENLKLAWSH 456 (538)
Q Consensus 406 ~~y~~~~~~~~~~~Cl-~i~~~~-~~~~IlG~~fl~~~yvVFD~e~~rIGfa~ 456 (538)
++|+... ..+|+ +|+..+ .+.||||++|||++|+|||++++|||||+
T Consensus 269 ~~y~~~~----~~~C~~~~~~~~~~~~~IlG~~fl~~~y~vfD~~~~~iG~A~ 317 (317)
T cd05478 269 SAYILQD----QGSCTSGFQSMGLGELWILGDVFIRQYYSVFDRANNKVGLAP 317 (317)
T ss_pred HHheecC----CCEEeEEEEeCCCCCeEEechHHhcceEEEEeCCCCEEeecC
Confidence 9999865 46895 677654 35799999999999999999999999996
No 7
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank
Probab=100.00 E-value=1.1e-52 Score=433.14 Aligned_cols=302 Identities=23% Similarity=0.373 Sum_probs=241.0
Q ss_pred cccccEEEEEEEecCCCeEEEEEEEcCCCceeEecC-CCCCCCCccccccccCCCCCCCCCCCCCCCccccCCCCCCCCC
Q 009271 104 NQFYWLHYTWIDIGTPNVSFLVALDAGSNLLWVPCQ-CIQCAPLSASYYTSLDRNLSEYDPSSSSSSKNVSCSHPLCKSR 182 (538)
Q Consensus 104 ~~~~~~yy~~v~iGtP~q~~~v~lDTGS~~~Wv~c~-C~~C~~~~~~~~~~~~~~~~~f~ps~SsT~~~~~C~~~~C~~~ 182 (538)
|+.+..||++|.||||||+|.|++||||+++||+|. |..|.. .|..++.|+|++|+|++..
T Consensus 1 ~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~--------~C~~~~~y~~~~SsT~~~~---------- 62 (325)
T cd05490 1 NYMDAQYYGEIGIGTPPQTFTVVFDTGSSNLWVPSVHCSLLDI--------ACWLHHKYNSSKSSTYVKN---------- 62 (325)
T ss_pred CCcCCEEEEEEEECCCCcEEEEEEeCCCccEEEEcCCCCCCCc--------cccCcCcCCcccCcceeeC----------
Confidence 467889999999999999999999999999999997 863311 0113468999999999852
Q ss_pred CCCCCCCCCCceeEecCCCCceEEEEEEEEEEEeccCCCCCCCccccccEEEEEEEeecCCCCCCCCCceEEeeCCCCCC
Q 009271 183 SSCKSLKDPCPYIADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVS 262 (538)
Q Consensus 183 ~~C~~~~~~c~y~~~Y~dg~ss~~G~l~~D~v~l~~~~~~~~~~~~~~~~~fGc~~~~~g~~~~~~~~dGIlGLG~~~~S 262 (538)
.|.|.+.|++| ++.|.+++|+|+|++. ...++.|||++.+.+........|||||||++.++
T Consensus 63 --------~~~~~i~Yg~G--~~~G~~~~D~v~~g~~--------~~~~~~Fg~~~~~~~~~~~~~~~dGilGLg~~~~s 124 (325)
T cd05490 63 --------GTEFAIQYGSG--SLSGYLSQDTVSIGGL--------QVEGQLFGEAVKQPGITFIAAKFDGILGMAYPRIS 124 (325)
T ss_pred --------CcEEEEEECCc--EEEEEEeeeEEEECCE--------EEcCEEEEEEeeccCCcccceeeeEEEecCCcccc
Confidence 38999999996 4799999999999875 35789999999887743333357999999987654
Q ss_pred ------hHHHHHhcCCCC-CceEEeecCC----CCccEEeCCCCCCCc----eeeeeeecCCCCceEEEeEeEEEECCeE
Q 009271 263 ------VPSLLAKAGLIQ-NSFSICFDEN----DSGSVFFGDQGPATQ----QSTSFLPIGEKYDAYFVGVESYCIGNSC 327 (538)
Q Consensus 263 ------l~sqL~~~g~i~-~~FS~cl~~~----~~G~l~fG~~d~~~~----~~tplv~~~~~~~~y~V~l~~i~Vgg~~ 327 (538)
++++|+++|+|. ++||+||.++ ..|.|+||++|+.++ .++|+.. ..+|.|++++|.||++.
T Consensus 125 ~~~~~~~~~~l~~~g~i~~~~FS~~L~~~~~~~~~G~l~~Gg~d~~~~~g~l~~~~~~~----~~~w~v~l~~i~vg~~~ 200 (325)
T cd05490 125 VDGVTPVFDNIMAQKLVEQNVFSFYLNRDPDAQPGGELMLGGTDPKYYTGDLHYVNVTR----KAYWQIHMDQVDVGSGL 200 (325)
T ss_pred ccCCCCHHHHHHhcCCCCCCEEEEEEeCCCCCCCCCEEEECccCHHHcCCceEEEEcCc----ceEEEEEeeEEEECCee
Confidence 567999999996 9999999853 369999999998765 3666632 37999999999999875
Q ss_pred ee-cCCceEEEcCCCccccccHHHHHHHHHHHHHhhcccccccccccccccccccccccccCccEEEEEcCCeeeeeecc
Q 009271 328 LT-QSGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMRLIFSKNQSFVVRNH 406 (538)
Q Consensus 328 l~-~~~~~aiiDSGTs~t~LP~~~y~~l~~~~~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~it~~f~gg~~~~v~~~ 406 (538)
.. .....+||||||+++++|+++|++|.+++.+. .. . ..+|..+|.....+|+|+|+| ||+.|.|+++
T Consensus 201 ~~~~~~~~aiiDSGTt~~~~p~~~~~~l~~~~~~~----~~-~-----~~~~~~~C~~~~~~P~i~f~f-gg~~~~l~~~ 269 (325)
T cd05490 201 TLCKGGCEAIVDTGTSLITGPVEEVRALQKAIGAV----PL-I-----QGEYMIDCEKIPTLPVISFSL-GGKVYPLTGE 269 (325)
T ss_pred eecCCCCEEEECCCCccccCCHHHHHHHHHHhCCc----cc-c-----CCCEEecccccccCCCEEEEE-CCEEEEEChH
Confidence 43 34568999999999999999999999877532 10 1 123455565556789999999 7799999999
Q ss_pred eeEEeecCCcceEEE-EEEec-----CCCceeEcceeeeeeEEEEeCCCCEEEEee
Q 009271 407 IFSFPENEGFTVFCL-TVMST-----DGDYGIIGQNFMMGHRIVFDRENLKLAWSH 456 (538)
Q Consensus 407 ~y~~~~~~~~~~~Cl-~i~~~-----~~~~~IlG~~fl~~~yvVFD~e~~rIGfa~ 456 (538)
+|++.........|+ +|+.. ....||||+.|||+||+|||++++|||||+
T Consensus 270 ~y~~~~~~~~~~~C~~~~~~~~~~~~~~~~~ilGd~flr~~y~vfD~~~~~IGfA~ 325 (325)
T cd05490 270 DYILKVSQRGTTICLSGFMGLDIPPPAGPLWILGDVFIGRYYTVFDRDNDRVGFAK 325 (325)
T ss_pred HeEEeccCCCCCEEeeEEEECCCCCCCCceEEEChHhheeeEEEEEcCCcEeeccC
Confidence 999876433346895 67653 234799999999999999999999999996
No 8
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets an
Probab=100.00 E-value=6.4e-52 Score=427.87 Aligned_cols=305 Identities=22% Similarity=0.356 Sum_probs=248.3
Q ss_pred eeccccccEEEEEEEecCCCeEEEEEEEcCCCceeEecC-CCCCCCCccccccccCCCCCCCCCCCCCCCccccCCCCCC
Q 009271 101 FFGNQFYWLHYTWIDIGTPNVSFLVALDAGSNLLWVPCQ-CIQCAPLSASYYTSLDRNLSEYDPSSSSSSKNVSCSHPLC 179 (538)
Q Consensus 101 ~~~~~~~~~yy~~v~iGtP~q~~~v~lDTGS~~~Wv~c~-C~~C~~~~~~~~~~~~~~~~~f~ps~SsT~~~~~C~~~~C 179 (538)
++.|+.+.+||++|.||||+|++.|++||||+++||+|. |..|... |...+.|+|++|+|++..
T Consensus 3 ~~~n~~~~~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~--------c~~~~~y~~~~Sst~~~~------- 67 (329)
T cd05485 3 PLSNYMDAQYYGVITIGTPPQSFKVVFDTGSSNLWVPSKKCSWTNIA--------CLLHNKYDSTKSSTYKKN------- 67 (329)
T ss_pred cceeccCCeEEEEEEECCCCcEEEEEEcCCCccEEEecCCCCCCCcc--------ccCCCeECCcCCCCeEEC-------
Confidence 356888999999999999999999999999999999998 8643210 112468999999999864
Q ss_pred CCCCCCCCCCCCCceeEecCCCCceEEEEEEEEEEEeccCCCCCCCccccccEEEEEEEeecCCCCCCCCCceEEeeCCC
Q 009271 180 KSRSSCKSLKDPCPYIADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLG 259 (538)
Q Consensus 180 ~~~~~C~~~~~~c~y~~~Y~dg~ss~~G~l~~D~v~l~~~~~~~~~~~~~~~~~fGc~~~~~g~~~~~~~~dGIlGLG~~ 259 (538)
.|.|.+.|++| + +.|.+++|+++|++. ...++.|||+..+.|........+||||||++
T Consensus 68 -----------~~~~~i~Y~~g-~-~~G~~~~D~v~ig~~--------~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~ 126 (329)
T cd05485 68 -----------GTEFAIQYGSG-S-LSGFLSTDTVSVGGV--------SVKGQTFAEAINEPGLTFVAAKFDGILGMGYS 126 (329)
T ss_pred -----------CeEEEEEECCc-e-EEEEEecCcEEECCE--------EECCEEEEEEEecCCccccccccceEEEcCCc
Confidence 48999999986 4 799999999999874 25689999998877643333467999999998
Q ss_pred CCC------hHHHHHhcCCCC-CceEEeecCC----CCccEEeCCCCCCCc----eeeeeeecCCCCceEEEeEeEEEEC
Q 009271 260 DVS------VPSLLAKAGLIQ-NSFSICFDEN----DSGSVFFGDQGPATQ----QSTSFLPIGEKYDAYFVGVESYCIG 324 (538)
Q Consensus 260 ~~S------l~sqL~~~g~i~-~~FS~cl~~~----~~G~l~fG~~d~~~~----~~tplv~~~~~~~~y~V~l~~i~Vg 324 (538)
.+| ++.||+++|+|+ ++||+||.++ ..|+|+||+.|+.++ .++|+.. ..+|.|.+++|.||
T Consensus 127 ~~s~~~~~p~~~~l~~qg~i~~~~FS~~l~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~~~v~~~~i~v~ 202 (329)
T cd05485 127 SISVDGVVPVFYNMVNQKLVDAPVFSFYLNRDPSAKEGGELILGGSDPKHYTGNFTYLPVTR----KGYWQFKMDSVSVG 202 (329)
T ss_pred cccccCCCCHHHHHHhCCCCCCCEEEEEecCCCCCCCCcEEEEcccCHHHcccceEEEEcCC----ceEEEEEeeEEEEC
Confidence 765 467999999996 8999999863 369999999998765 4888742 37999999999999
Q ss_pred CeEeecCCceEEEcCCCccccccHHHHHHHHHHHHHhhcccccccccccccccccccccccccCccEEEEEcCCeeeeee
Q 009271 325 NSCLTQSGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMRLIFSKNQSFVVR 404 (538)
Q Consensus 325 g~~l~~~~~~aiiDSGTs~t~LP~~~y~~l~~~~~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~it~~f~gg~~~~v~ 404 (538)
++.+......+||||||++++||+++|++|.+++... ... ..||..+|....++|+|+|+| |++++.|+
T Consensus 203 ~~~~~~~~~~~iiDSGtt~~~lP~~~~~~l~~~~~~~----~~~------~~~~~~~C~~~~~~p~i~f~f-gg~~~~i~ 271 (329)
T cd05485 203 EGEFCSGGCQAIADTGTSLIAGPVDEIEKLNNAIGAK----PII------GGEYMVNCSAIPSLPDITFVL-GGKSFSLT 271 (329)
T ss_pred CeeecCCCcEEEEccCCcceeCCHHHHHHHHHHhCCc----ccc------CCcEEEeccccccCCcEEEEE-CCEEeEEC
Confidence 9988756678999999999999999999998776431 111 135666776556789999999 77999999
Q ss_pred cceeEEeecCCcceEEE-EEEecC-----CCceeEcceeeeeeEEEEeCCCCEEEEee
Q 009271 405 NHIFSFPENEGFTVFCL-TVMSTD-----GDYGIIGQNFMMGHRIVFDRENLKLAWSH 456 (538)
Q Consensus 405 ~~~y~~~~~~~~~~~Cl-~i~~~~-----~~~~IlG~~fl~~~yvVFD~e~~rIGfa~ 456 (538)
+++|+++..+....+|+ +++..+ ++.||||+.|||++|+|||++++|||||+
T Consensus 272 ~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~IlG~~fl~~~y~vFD~~~~~ig~a~ 329 (329)
T cd05485 272 GKDYVLKVTQMGQTICLSGFMGIDIPPPAGPLWILGDVFIGKYYTEFDLGNNRVGFAT 329 (329)
T ss_pred hHHeEEEecCCCCCEEeeeEEECcCCCCCCCeEEEchHHhccceEEEeCCCCEEeecC
Confidence 99999876543357895 677532 34799999999999999999999999985
No 9
>PTZ00165 aspartyl protease; Provisional
Probab=100.00 E-value=1.3e-51 Score=441.08 Aligned_cols=308 Identities=22% Similarity=0.380 Sum_probs=248.7
Q ss_pred ceeeeccccccEEEEEEEecCCCeEEEEEEEcCCCceeEecC-CCC--CCCCccccccccCCCCCCCCCCCCCCCccccC
Q 009271 98 QTHFFGNQFYWLHYTWIDIGTPNVSFLVALDAGSNLLWVPCQ-CIQ--CAPLSASYYTSLDRNLSEYDPSSSSSSKNVSC 174 (538)
Q Consensus 98 ~~~~~~~~~~~~yy~~v~iGtP~q~~~v~lDTGS~~~Wv~c~-C~~--C~~~~~~~~~~~~~~~~~f~ps~SsT~~~~~C 174 (538)
...++.|+.+..||++|.||||||+|.|++||||+++||||. |.. |. .++.|||++||||+.+.+
T Consensus 109 ~~~~l~n~~d~~Y~~~I~IGTPpQ~f~Vv~DTGSS~lWVps~~C~~~~C~------------~~~~yd~s~SSTy~~~~~ 176 (482)
T PTZ00165 109 LQQDLLNFHNSQYFGEIQVGTPPKSFVVVFDTGSSNLWIPSKECKSGGCA------------PHRKFDPKKSSTYTKLKL 176 (482)
T ss_pred cceecccccCCeEEEEEEeCCCCceEEEEEeCCCCCEEEEchhcCccccc------------ccCCCCccccCCcEecCC
Confidence 346677999999999999999999999999999999999998 854 43 346899999999997532
Q ss_pred CCCCCCCCCCCCCCCCCCceeEecCCCCceEEEEEEEEEEEeccCCCCCCCccccccEEEEEEEeecCCCCCCCCCceEE
Q 009271 175 SHPLCKSRSSCKSLKDPCPYIADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVM 254 (538)
Q Consensus 175 ~~~~C~~~~~C~~~~~~c~y~~~Y~dg~ss~~G~l~~D~v~l~~~~~~~~~~~~~~~~~fGc~~~~~g~~~~~~~~dGIl 254 (538)
.. ....+.++|++| +..|.+++|+|+|++. .++++.|||++.+++..+...+.||||
T Consensus 177 ~~-------------~~~~~~i~YGsG--s~~G~l~~DtV~ig~l--------~i~~q~FG~a~~~s~~~f~~~~~DGIL 233 (482)
T PTZ00165 177 GD-------------ESAETYIQYGTG--ECVLALGKDTVKIGGL--------KVKHQSIGLAIEESLHPFADLPFDGLV 233 (482)
T ss_pred CC-------------ccceEEEEeCCC--cEEEEEEEEEEEECCE--------EEccEEEEEEEecccccccccccccee
Confidence 21 112567999997 4679999999999874 367899999998876533444689999
Q ss_pred eeCCCCC---------ChHHHHHhcCCCC-CceEEeecCC--CCccEEeCCCCCCCc------eeeeeeecCCCCceEEE
Q 009271 255 GLGLGDV---------SVPSLLAKAGLIQ-NSFSICFDEN--DSGSVFFGDQGPATQ------QSTSFLPIGEKYDAYFV 316 (538)
Q Consensus 255 GLG~~~~---------Sl~sqL~~~g~i~-~~FS~cl~~~--~~G~l~fG~~d~~~~------~~tplv~~~~~~~~y~V 316 (538)
|||++.+ +++.+|.+||+|+ ++||+||.++ ..|.|+|||+|+..+ .|+|++. ..+|.|
T Consensus 234 GLg~~~~s~~s~~~~~p~~~~l~~qgli~~~~FS~yL~~~~~~~G~l~fGGiD~~~~~~~g~i~~~Pv~~----~~yW~i 309 (482)
T PTZ00165 234 GLGFPDKDFKESKKALPIVDNIKKQNLLKRNIFSFYMSKDLNQPGSISFGSADPKYTLEGHKIWWFPVIS----TDYWEI 309 (482)
T ss_pred ecCCCcccccccCCCCCHHHHHHHcCCcccceEEEEeccCCCCCCEEEeCCcCHHHcCCCCceEEEEccc----cceEEE
Confidence 9998764 5678999999997 9999999753 569999999987533 4777743 379999
Q ss_pred eEeEEEECCeEeec--CCceEEEcCCCccccccHHHHHHHHHHHHHhhcccccccccccccccccccccccccCccEEEE
Q 009271 317 GVESYCIGNSCLTQ--SGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMRLI 394 (538)
Q Consensus 317 ~l~~i~Vgg~~l~~--~~~~aiiDSGTs~t~LP~~~y~~l~~~~~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~it~~ 394 (538)
.+++|.||++.+.. ....+|+||||+++++|+++|++|.+++... ..|+.. ..+|+|+|+
T Consensus 310 ~l~~i~vgg~~~~~~~~~~~aIiDTGTSli~lP~~~~~~i~~~i~~~-------------~~C~~~-----~~lP~itf~ 371 (482)
T PTZ00165 310 EVVDILIDGKSLGFCDRKCKAAIDTGSSLITGPSSVINPLLEKIPLE-------------EDCSNK-----DSLPRISFV 371 (482)
T ss_pred EeCeEEECCEEeeecCCceEEEEcCCCccEeCCHHHHHHHHHHcCCc-------------cccccc-----ccCCceEEE
Confidence 99999999987753 5678999999999999999999998766421 236643 478999999
Q ss_pred EcC--C--eeeeeecceeEEeec--CCcceEE-EEEEecC-----CCceeEcceeeeeeEEEEeCCCCEEEEeecCCCcc
Q 009271 395 FSK--N--QSFVVRNHIFSFPEN--EGFTVFC-LTVMSTD-----GDYGIIGQNFMMGHRIVFDRENLKLAWSHSKCEEV 462 (538)
Q Consensus 395 f~g--g--~~~~v~~~~y~~~~~--~~~~~~C-l~i~~~~-----~~~~IlG~~fl~~~yvVFD~e~~rIGfa~~~C~~~ 462 (538)
|.| | .+|.+++++|+++.. +.....| ++++..+ ++.||||++||++||+|||++|+|||||+++|...
T Consensus 372 f~g~~g~~v~~~l~p~dYi~~~~~~~~~~~~C~~g~~~~d~~~~~g~~~ILGd~Flr~yy~VFD~~n~rIGfA~a~~~~~ 451 (482)
T PTZ00165 372 LEDVNGRKIKFDMDPEDYVIEEGDSEEQEHQCVIGIIPMDVPAPRGPLFVLGNNFIRKYYSIFDRDHMMVGLVPAKHDQS 451 (482)
T ss_pred ECCCCCceEEEEEchHHeeeecccCCCCCCeEEEEEEECCCCCCCCceEEEchhhheeEEEEEeCCCCEEEEEeeccCCC
Confidence 953 2 278999999999742 2225799 6888643 24799999999999999999999999999998653
No 10
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease. Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalyt
Probab=100.00 E-value=7.5e-52 Score=425.19 Aligned_cols=291 Identities=21% Similarity=0.373 Sum_probs=237.9
Q ss_pred EEEEEEecCCCeEEEEEEEcCCCceeEecC-CC--CCCCCccccccccCCCCCCCCCCCCCCCccccCCCCCCCCCCCCC
Q 009271 110 HYTWIDIGTPNVSFLVALDAGSNLLWVPCQ-CI--QCAPLSASYYTSLDRNLSEYDPSSSSSSKNVSCSHPLCKSRSSCK 186 (538)
Q Consensus 110 yy~~v~iGtP~q~~~v~lDTGS~~~Wv~c~-C~--~C~~~~~~~~~~~~~~~~~f~ps~SsT~~~~~C~~~~C~~~~~C~ 186 (538)
||++|.||||||+|.|+|||||+++||+|. |. .|.. ++.|+|++|+|++..
T Consensus 1 Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~s~~C~~~~C~~------------~~~y~~~~SsT~~~~-------------- 54 (316)
T cd05486 1 YFGQISIGTPPQNFTVIFDTGSSNLWVPSIYCTSQACTK------------HNRFQPSESSTYVSN-------------- 54 (316)
T ss_pred CeEEEEECCCCcEEEEEEcCCCccEEEecCCCCCcccCc------------cceECCCCCcccccC--------------
Confidence 799999999999999999999999999998 75 4543 368999999999854
Q ss_pred CCCCCCceeEecCCCCceEEEEEEEEEEEeccCCCCCCCccccccEEEEEEEeecCCCCCCCCCceEEeeCCCCCC----
Q 009271 187 SLKDPCPYIADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVS---- 262 (538)
Q Consensus 187 ~~~~~c~y~~~Y~dg~ss~~G~l~~D~v~l~~~~~~~~~~~~~~~~~fGc~~~~~g~~~~~~~~dGIlGLG~~~~S---- 262 (538)
.|.|++.|++| ++.|.+++|+|+|++. ...++.|||+..+.+..+.....|||||||++.++
T Consensus 55 ----~~~~~i~Yg~g--~~~G~~~~D~v~ig~~--------~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~ 120 (316)
T cd05486 55 ----GEAFSIQYGTG--SLTGIIGIDQVTVEGI--------TVQNQQFAESVSEPGSTFQDSEFDGILGLAYPSLAVDGV 120 (316)
T ss_pred ----CcEEEEEeCCc--EEEEEeeecEEEECCE--------EEcCEEEEEeeccCcccccccccceEeccCchhhccCCC
Confidence 48999999996 4799999999999864 35789999998877653333467999999987654
Q ss_pred --hHHHHHhcCCCC-CceEEeecCC----CCccEEeCCCCCCCc----eeeeeeecCCCCceEEEeEeEEEECCeEeec-
Q 009271 263 --VPSLLAKAGLIQ-NSFSICFDEN----DSGSVFFGDQGPATQ----QSTSFLPIGEKYDAYFVGVESYCIGNSCLTQ- 330 (538)
Q Consensus 263 --l~sqL~~~g~i~-~~FS~cl~~~----~~G~l~fG~~d~~~~----~~tplv~~~~~~~~y~V~l~~i~Vgg~~l~~- 330 (538)
++++|+++|+|+ ++||+||.++ ..|.|+||++|+.++ .|+|+.. ..+|.|++++|.||++.+..
T Consensus 121 ~p~~~~l~~qg~i~~~~FS~~L~~~~~~~~~g~l~fGg~d~~~~~g~l~~~pi~~----~~~w~v~l~~i~v~g~~~~~~ 196 (316)
T cd05486 121 TPVFDNMMAQNLVELPMFSVYMSRNPNSADGGELVFGGFDTSRFSGQLNWVPVTV----QGYWQIQLDNIQVGGTVIFCS 196 (316)
T ss_pred CCHHHHHHhcCCCCCCEEEEEEccCCCCCCCcEEEEcccCHHHcccceEEEECCC----ceEEEEEeeEEEEecceEecC
Confidence 578999999997 8999999853 369999999998764 4888743 37999999999999988752
Q ss_pred CCceEEEcCCCccccccHHHHHHHHHHHHHhhcccccccccccccccccccccccccCccEEEEEcCCeeeeeecceeEE
Q 009271 331 SGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMRLIFSKNQSFVVRNHIFSF 410 (538)
Q Consensus 331 ~~~~aiiDSGTs~t~LP~~~y~~l~~~~~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~it~~f~gg~~~~v~~~~y~~ 410 (538)
....+||||||++++||+++|++|.+++... . . +.+|..+|.....+|+|+|+| +|..+++++++|++
T Consensus 197 ~~~~aiiDTGTs~~~lP~~~~~~l~~~~~~~----~--~-----~~~~~~~C~~~~~~p~i~f~f-~g~~~~l~~~~y~~ 264 (316)
T cd05486 197 DGCQAIVDTGTSLITGPSGDIKQLQNYIGAT----A--T-----DGEYGVDCSTLSLMPSVTFTI-NGIPYSLSPQAYTL 264 (316)
T ss_pred CCCEEEECCCcchhhcCHHHHHHHHHHhCCc----c--c-----CCcEEEeccccccCCCEEEEE-CCEEEEeCHHHeEE
Confidence 4568999999999999999999998766421 1 1 124555665556799999999 67999999999998
Q ss_pred eecCCcceEEE-EEEecC-----CCceeEcceeeeeeEEEEeCCCCEEEEee
Q 009271 411 PENEGFTVFCL-TVMSTD-----GDYGIIGQNFMMGHRIVFDRENLKLAWSH 456 (538)
Q Consensus 411 ~~~~~~~~~Cl-~i~~~~-----~~~~IlG~~fl~~~yvVFD~e~~rIGfa~ 456 (538)
........+|+ +|+..+ ++.||||+.|||++|+|||.+++|||||+
T Consensus 265 ~~~~~~~~~C~~~~~~~~~~~~~~~~~ILGd~flr~~y~vfD~~~~~IGfA~ 316 (316)
T cd05486 265 EDQSDGGGYCSSGFQGLDIPPPAGPLWILGDVFIRQYYSVFDRGNNRVGFAP 316 (316)
T ss_pred ecccCCCCEEeeEEEECCCCCCCCCeEEEchHHhcceEEEEeCCCCEeeccC
Confidence 75322256895 676532 34799999999999999999999999986
No 11
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa. Gastricsin is also called pepsinogen C. Gastricsins are produced in gastric mucosa of mammals. It is synthesized by the chief cells in the stomach as an inactive zymogen. It is self-converted to a mature enzyme under acidic conditions. Human gastricsin is distributed throughout all parts of the stomach. Gastricsin is synthesized as an inactive progastricsin that has an approximately 40 residue prosequence. It is self-converting to a mature enzyme being triggered by a drop in pH from neutrality to acidic conditions. Like other aspartic proteases, gastricsin are characterized by two catalytic aspartic residues at the active site, and display optimal activity at acidic pH. Mature enzyme has a pseudo-2-fold symmetry that passes through the active site between the catalytic aspartate residues. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic aspartate residue, with an exten
Probab=100.00 E-value=2e-51 Score=422.33 Aligned_cols=292 Identities=22% Similarity=0.387 Sum_probs=241.5
Q ss_pred ccEEEEEEEecCCCeEEEEEEEcCCCceeEecC-CC--CCCCCccccccccCCCCCCCCCCCCCCCccccCCCCCCCCCC
Q 009271 107 YWLHYTWIDIGTPNVSFLVALDAGSNLLWVPCQ-CI--QCAPLSASYYTSLDRNLSEYDPSSSSSSKNVSCSHPLCKSRS 183 (538)
Q Consensus 107 ~~~yy~~v~iGtP~q~~~v~lDTGS~~~Wv~c~-C~--~C~~~~~~~~~~~~~~~~~f~ps~SsT~~~~~C~~~~C~~~~ 183 (538)
+..|+++|.||||||++.|+|||||+++||+|. |. .|.+ .+.|+|++|+|++..
T Consensus 1 ~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~C~~~~C~~------------~~~f~~~~SsT~~~~----------- 57 (318)
T cd05477 1 DMSYYGEISIGTPPQNFLVLFDTGSSNLWVPSVLCQSQACTN------------HTKFNPSQSSTYSTN----------- 57 (318)
T ss_pred CcEEEEEEEECCCCcEEEEEEeCCCccEEEccCCCCCccccc------------cCCCCcccCCCceEC-----------
Confidence 357999999999999999999999999999997 75 3532 468999999999853
Q ss_pred CCCCCCCCCceeEecCCCCceEEEEEEEEEEEeccCCCCCCCccccccEEEEEEEeecCCCCCCCCCceEEeeCCCC---
Q 009271 184 SCKSLKDPCPYIADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGD--- 260 (538)
Q Consensus 184 ~C~~~~~~c~y~~~Y~dg~ss~~G~l~~D~v~l~~~~~~~~~~~~~~~~~fGc~~~~~g~~~~~~~~dGIlGLG~~~--- 260 (538)
.|.|++.|++| + +.|.+++|+|+|++. ..+++.|||++...+........+||||||+..
T Consensus 58 -------~~~~~~~Yg~G-s-~~G~~~~D~i~~g~~--------~i~~~~Fg~~~~~~~~~~~~~~~~GilGLg~~~~s~ 120 (318)
T cd05477 58 -------GETFSLQYGSG-S-LTGIFGYDTVTVQGI--------IITNQEFGLSETEPGTNFVYAQFDGILGLAYPSISA 120 (318)
T ss_pred -------CcEEEEEECCc-E-EEEEEEeeEEEECCE--------EEcCEEEEEEEecccccccccceeeEeecCcccccc
Confidence 48999999996 3 799999999999874 357899999998766432223569999999853
Q ss_pred ---CChHHHHHhcCCCC-CceEEeecCC---CCccEEeCCCCCCCc----eeeeeeecCCCCceEEEeEeEEEECCeEee
Q 009271 261 ---VSVPSLLAKAGLIQ-NSFSICFDEN---DSGSVFFGDQGPATQ----QSTSFLPIGEKYDAYFVGVESYCIGNSCLT 329 (538)
Q Consensus 261 ---~Sl~sqL~~~g~i~-~~FS~cl~~~---~~G~l~fG~~d~~~~----~~tplv~~~~~~~~y~V~l~~i~Vgg~~l~ 329 (538)
.++++||+++|+|. ++||+||.++ ..|.|+||++|+.++ .++|+.. ..+|.|++++|.||++.+.
T Consensus 121 ~~~~~~~~~L~~~g~i~~~~FS~~L~~~~~~~~g~l~fGg~d~~~~~g~l~~~pv~~----~~~w~v~l~~i~v~g~~~~ 196 (318)
T cd05477 121 GGATTVMQGMMQQNLLQAPIFSFYLSGQQGQQGGELVFGGVDNNLYTGQIYWTPVTS----ETYWQIGIQGFQINGQATG 196 (318)
T ss_pred cCCCCHHHHHHhcCCcCCCEEEEEEcCCCCCCCCEEEEcccCHHHcCCceEEEecCC----ceEEEEEeeEEEECCEEec
Confidence 57899999999996 9999999864 469999999998765 4788743 3799999999999999874
Q ss_pred --cCCceEEEcCCCccccccHHHHHHHHHHHHHhhcccccccccccccccccccccccccCccEEEEEcCCeeeeeecce
Q 009271 330 --QSGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMRLIFSKNQSFVVRNHI 407 (538)
Q Consensus 330 --~~~~~aiiDSGTs~t~LP~~~y~~l~~~~~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~it~~f~gg~~~~v~~~~ 407 (538)
.....+||||||++++||+++|++|.+++..+... ..+|..+|.....+|.|+|+| +|.++.+++++
T Consensus 197 ~~~~~~~~iiDSGtt~~~lP~~~~~~l~~~~~~~~~~----------~~~~~~~C~~~~~~p~l~~~f-~g~~~~v~~~~ 265 (318)
T cd05477 197 WCSQGCQAIVDTGTSLLTAPQQVMSTLMQSIGAQQDQ----------YGQYVVNCNNIQNLPTLTFTI-NGVSFPLPPSA 265 (318)
T ss_pred ccCCCceeeECCCCccEECCHHHHHHHHHHhCCcccc----------CCCEEEeCCccccCCcEEEEE-CCEEEEECHHH
Confidence 23467999999999999999999999888654321 235666776666799999999 67999999999
Q ss_pred eEEeecCCcceEE-EEEEecC------CCceeEcceeeeeeEEEEeCCCCEEEEeec
Q 009271 408 FSFPENEGFTVFC-LTVMSTD------GDYGIIGQNFMMGHRIVFDRENLKLAWSHS 457 (538)
Q Consensus 408 y~~~~~~~~~~~C-l~i~~~~------~~~~IlG~~fl~~~yvVFD~e~~rIGfa~~ 457 (538)
|+... ..+| ++|++.. +..||||+.|||++|+|||++++|||||++
T Consensus 266 y~~~~----~~~C~~~i~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~ig~a~~ 318 (318)
T cd05477 266 YILQN----NGYCTVGIEPTYLPSQNGQPLWILGDVFLRQYYSVYDLGNNQVGFATA 318 (318)
T ss_pred eEecC----CCeEEEEEEecccCCCCCCceEEEcHHHhhheEEEEeCCCCEEeeeeC
Confidence 99874 3589 5887531 246999999999999999999999999985
No 12
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=100.00 E-value=2.7e-51 Score=421.12 Aligned_cols=289 Identities=27% Similarity=0.422 Sum_probs=236.4
Q ss_pred eeccccccEEEEEEEecCCCeEEEEEEEcCCCceeEecC-CC---CCCCCccccccccCCCCCCCCCCCCCCCccccCCC
Q 009271 101 FFGNQFYWLHYTWIDIGTPNVSFLVALDAGSNLLWVPCQ-CI---QCAPLSASYYTSLDRNLSEYDPSSSSSSKNVSCSH 176 (538)
Q Consensus 101 ~~~~~~~~~yy~~v~iGtP~q~~~v~lDTGS~~~Wv~c~-C~---~C~~~~~~~~~~~~~~~~~f~ps~SsT~~~~~C~~ 176 (538)
++.|+.+..||++|.||||+|+|.|++||||+++||+|. |. .|.. ++.|+|++|+|++..
T Consensus 2 ~l~n~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~C~~~~~C~~------------~~~y~~~~SsT~~~~---- 65 (317)
T cd06098 2 ALKNYLDAQYFGEIGIGTPPQKFTVIFDTGSSNLWVPSSKCYFSIACYF------------HSKYKSSKSSTYKKN---- 65 (317)
T ss_pred cccccCCCEEEEEEEECCCCeEEEEEECCCccceEEecCCCCCCccccc------------cCcCCcccCCCcccC----
Confidence 356888999999999999999999999999999999997 84 4643 368999999999854
Q ss_pred CCCCCCCCCCCCCCCCceeEecCCCCceEEEEEEEEEEEeccCCCCCCCccccccEEEEEEEeecCCCCCCCCCceEEee
Q 009271 177 PLCKSRSSCKSLKDPCPYIADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGL 256 (538)
Q Consensus 177 ~~C~~~~~C~~~~~~c~y~~~Y~dg~ss~~G~l~~D~v~l~~~~~~~~~~~~~~~~~fGc~~~~~g~~~~~~~~dGIlGL 256 (538)
.+.+.+.|++| ++.|.+++|+|+|++. ...++.|||++.+.+........||||||
T Consensus 66 --------------~~~~~i~Yg~G--~~~G~~~~D~v~ig~~--------~v~~~~f~~~~~~~~~~~~~~~~dGilGL 121 (317)
T cd06098 66 --------------GTSASIQYGTG--SISGFFSQDSVTVGDL--------VVKNQVFIEATKEPGLTFLLAKFDGILGL 121 (317)
T ss_pred --------------CCEEEEEcCCc--eEEEEEEeeEEEECCE--------EECCEEEEEEEecCCccccccccceeccc
Confidence 36789999986 3789999999999874 35789999998776543333467999999
Q ss_pred CCCCCC------hHHHHHhcCCCC-CceEEeecCC----CCccEEeCCCCCCCc----eeeeeeecCCCCceEEEeEeEE
Q 009271 257 GLGDVS------VPSLLAKAGLIQ-NSFSICFDEN----DSGSVFFGDQGPATQ----QSTSFLPIGEKYDAYFVGVESY 321 (538)
Q Consensus 257 G~~~~S------l~sqL~~~g~i~-~~FS~cl~~~----~~G~l~fG~~d~~~~----~~tplv~~~~~~~~y~V~l~~i 321 (538)
|+..++ ++.+|+++|+|+ ++||+||.++ ..|.|+||++|+.++ .|+|++. ..+|.|.+++|
T Consensus 122 g~~~~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~~~g~l~~~pv~~----~~~w~v~l~~i 197 (317)
T cd06098 122 GFQEISVGKAVPVWYNMVEQGLVKEPVFSFWLNRNPDEEEGGELVFGGVDPKHFKGEHTYVPVTR----KGYWQFEMGDV 197 (317)
T ss_pred cccchhhcCCCCHHHHHHhcCCCCCCEEEEEEecCCCCCCCcEEEECccChhhcccceEEEecCc----CcEEEEEeCeE
Confidence 987654 456899999996 8999999753 469999999998875 4888853 36899999999
Q ss_pred EECCeEeec--CCceEEEcCCCccccccHHHHHHHHHHHHHhhcccccccccccccccccccccccccCccEEEEEcCCe
Q 009271 322 CIGNSCLTQ--SGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMRLIFSKNQ 399 (538)
Q Consensus 322 ~Vgg~~l~~--~~~~aiiDSGTs~t~LP~~~y~~l~~~~~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~it~~f~gg~ 399 (538)
.||++.+.. ....+||||||++++||++++++|. ....|+.. ..+|+|+|+| ||+
T Consensus 198 ~v~g~~~~~~~~~~~aivDTGTs~~~lP~~~~~~i~-----------------~~~~C~~~-----~~~P~i~f~f-~g~ 254 (317)
T cd06098 198 LIGGKSTGFCAGGCAAIADSGTSLLAGPTTIVTQIN-----------------SAVDCNSL-----SSMPNVSFTI-GGK 254 (317)
T ss_pred EECCEEeeecCCCcEEEEecCCcceeCCHHHHHhhh-----------------ccCCcccc-----ccCCcEEEEE-CCE
Confidence 999998652 4567999999999999998776553 11246643 4689999999 779
Q ss_pred eeeeecceeEEeecCCcceEEE-EEEecC-----CCceeEcceeeeeeEEEEeCCCCEEEEee
Q 009271 400 SFVVRNHIFSFPENEGFTVFCL-TVMSTD-----GDYGIIGQNFMMGHRIVFDRENLKLAWSH 456 (538)
Q Consensus 400 ~~~v~~~~y~~~~~~~~~~~Cl-~i~~~~-----~~~~IlG~~fl~~~yvVFD~e~~rIGfa~ 456 (538)
.+.|++++|++...++....|+ +|+..+ +..||||++|||+||+|||++++|||||+
T Consensus 255 ~~~l~~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~IlGd~Flr~~y~VfD~~~~~iGfA~ 317 (317)
T cd06098 255 TFELTPEQYILKVGEGAAAQCISGFTALDVPPPRGPLWILGDVFMGAYHTVFDYGNLRVGFAE 317 (317)
T ss_pred EEEEChHHeEEeecCCCCCEEeceEEECCCCCCCCCeEEechHHhcccEEEEeCCCCEEeecC
Confidence 9999999999876543356894 676432 34799999999999999999999999995
No 13
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily. Fungal Proteinase A, a proteolytic enzyme distributed among a variety of organisms, is a member of the aspartic proteinase superfamily. In Saccharomyces cerevisiae, targeted to the vacuole as a zymogen, activation of proteinases A at acidic pH can occur by two different pathways: a one-step process to release mature proteinase A, involving the intervention of proteinase B, or a step-wise pathway via the auto-activation product known as pseudo-proteinase A. Once active, S. cerevisiae proteinase A is essential to the activities of other yeast vacuolar hydrolases, including proteinase B and carboxypeptidase Y. The mature enzyme is bilobal, with each lobe providing one of the two catalytically essential aspartic acid residues in the active site. The crystal structure of free proteinase A shows that flap loop is atypically pointing directly into the S(1) pocket of the enzyme. Proteinase A preferentially hydro
Probab=100.00 E-value=1.6e-51 Score=423.38 Aligned_cols=297 Identities=24% Similarity=0.381 Sum_probs=244.0
Q ss_pred eeccccccEEEEEEEecCCCeEEEEEEEcCCCceeEecC-CC--CCCCCccccccccCCCCCCCCCCCCCCCccccCCCC
Q 009271 101 FFGNQFYWLHYTWIDIGTPNVSFLVALDAGSNLLWVPCQ-CI--QCAPLSASYYTSLDRNLSEYDPSSSSSSKNVSCSHP 177 (538)
Q Consensus 101 ~~~~~~~~~yy~~v~iGtP~q~~~v~lDTGS~~~Wv~c~-C~--~C~~~~~~~~~~~~~~~~~f~ps~SsT~~~~~C~~~ 177 (538)
++.|+.+..||++|.||||+|++.|++||||+++||+|. |. .|.. ++.|+|++|+|++..
T Consensus 2 ~l~n~~~~~Y~~~i~iGtp~q~~~v~~DTGSs~~wv~~~~C~~~~C~~------------~~~y~~~~Sst~~~~----- 64 (320)
T cd05488 2 PLTNYLNAQYFTDITLGTPPQKFKVILDTGSSNLWVPSVKCGSIACFL------------HSKYDSSASSTYKAN----- 64 (320)
T ss_pred cccccCCCEEEEEEEECCCCcEEEEEEecCCcceEEEcCCCCCcccCC------------cceECCCCCcceeeC-----
Confidence 355778899999999999999999999999999999998 85 4542 358999999999853
Q ss_pred CCCCCCCCCCCCCCCceeEecCCCCceEEEEEEEEEEEeccCCCCCCCccccccEEEEEEEeecCCCCCCCCCceEEeeC
Q 009271 178 LCKSRSSCKSLKDPCPYIADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLG 257 (538)
Q Consensus 178 ~C~~~~~C~~~~~~c~y~~~Y~dg~ss~~G~l~~D~v~l~~~~~~~~~~~~~~~~~fGc~~~~~g~~~~~~~~dGIlGLG 257 (538)
.|.|.+.|++| + ++|.+++|+++|++. ..+++.|||++.+.|........|||||||
T Consensus 65 -------------~~~~~~~y~~g-~-~~G~~~~D~v~ig~~--------~~~~~~f~~a~~~~g~~~~~~~~dGilGLg 121 (320)
T cd05488 65 -------------GTEFKIQYGSG-S-LEGFVSQDTLSIGDL--------TIKKQDFAEATSEPGLAFAFGKFDGILGLA 121 (320)
T ss_pred -------------CCEEEEEECCc-e-EEEEEEEeEEEECCE--------EECCEEEEEEecCCCcceeeeeeceEEecC
Confidence 48999999986 3 799999999999874 256899999988777543333579999999
Q ss_pred CCCCCh------HHHHHhcCCCC-CceEEeecCC--CCccEEeCCCCCCCc----eeeeeeecCCCCceEEEeEeEEEEC
Q 009271 258 LGDVSV------PSLLAKAGLIQ-NSFSICFDEN--DSGSVFFGDQGPATQ----QSTSFLPIGEKYDAYFVGVESYCIG 324 (538)
Q Consensus 258 ~~~~Sl------~sqL~~~g~i~-~~FS~cl~~~--~~G~l~fG~~d~~~~----~~tplv~~~~~~~~y~V~l~~i~Vg 324 (538)
++..+. ..+|.++|+|. ++||+||.+. ..|.|+||++|+.++ .|+|++. ..+|.|++++|.||
T Consensus 122 ~~~~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~w~v~l~~i~vg 197 (320)
T cd05488 122 YDTISVNKIVPPFYNMINQGLLDEPVFSFYLGSSEEDGGEATFGGIDESRFTGKITWLPVRR----KAYWEVELEKIGLG 197 (320)
T ss_pred CccccccCCCCHHHHHHhcCCCCCCEEEEEecCCCCCCcEEEECCcCHHHcCCceEEEeCCc----CcEEEEEeCeEEEC
Confidence 987654 34788999996 8999999864 579999999998654 4888753 36899999999999
Q ss_pred CeEeecCCceEEEcCCCccccccHHHHHHHHHHHHHhhcccccccccccccccccccccccccCccEEEEEcCCeeeeee
Q 009271 325 NSCLTQSGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMRLIFSKNQSFVVR 404 (538)
Q Consensus 325 g~~l~~~~~~aiiDSGTs~t~LP~~~y~~l~~~~~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~it~~f~gg~~~~v~ 404 (538)
++.+......+||||||++++||++++++|.+++.+.. ....+|..+|.....+|.|+|+| +|+++.|+
T Consensus 198 ~~~~~~~~~~~ivDSGtt~~~lp~~~~~~l~~~~~~~~----------~~~~~~~~~C~~~~~~P~i~f~f-~g~~~~i~ 266 (320)
T cd05488 198 DEELELENTGAAIDTGTSLIALPSDLAEMLNAEIGAKK----------SWNGQYTVDCSKVDSLPDLTFNF-DGYNFTLG 266 (320)
T ss_pred CEEeccCCCeEEEcCCcccccCCHHHHHHHHHHhCCcc----------ccCCcEEeeccccccCCCEEEEE-CCEEEEEC
Confidence 99887667789999999999999999999887764321 11335666776656799999999 67999999
Q ss_pred cceeEEeecCCcceEEE-EEEecC-----CCceeEcceeeeeeEEEEeCCCCEEEEee
Q 009271 405 NHIFSFPENEGFTVFCL-TVMSTD-----GDYGIIGQNFMMGHRIVFDRENLKLAWSH 456 (538)
Q Consensus 405 ~~~y~~~~~~~~~~~Cl-~i~~~~-----~~~~IlG~~fl~~~yvVFD~e~~rIGfa~ 456 (538)
+++|++.. ...|+ .+...+ ++.||||++|||++|+|||++++|||||+
T Consensus 267 ~~~y~~~~----~g~C~~~~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~iG~a~ 320 (320)
T cd05488 267 PFDYTLEV----SGSCISAFTGMDFPEPVGPLAIVGDAFLRKYYSVYDLGNNAVGLAK 320 (320)
T ss_pred HHHheecC----CCeEEEEEEECcCCCCCCCeEEEchHHhhheEEEEeCCCCEEeecC
Confidence 99999853 34796 555432 24799999999999999999999999986
No 14
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure. Renin, also known as angiotensinogenase, is a circulating enzyme that participates in the renin-angiotensin system that mediates extracellular volume, arterial vasoconstriction, and consequently mean arterial blood pressure. The enzyme is secreted by the kidneys from specialized juxtaglomerular cells in response to decreases in glomerular filtration rate (a consequence of low blood volume), diminished filtered sodium chloride and sympathetic nervous system innervation. The enzyme circulates in the blood stream and hydrolyzes angiotensinogen secreted from the liver into the peptide angiotensin I. Angiotensin I is further cleaved in the lungs by endothelial bound angiotensin converting enzyme (ACE) into angiotensin II, the final active peptide. Renin is a member of the aspartic protease family. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate r
Probab=100.00 E-value=4.7e-51 Score=421.05 Aligned_cols=301 Identities=23% Similarity=0.403 Sum_probs=241.7
Q ss_pred ccccccEEEEEEEecCCCeEEEEEEEcCCCceeEecC-CCCCCCCccccccccCCCCCCCCCCCCCCCccccCCCCCCCC
Q 009271 103 GNQFYWLHYTWIDIGTPNVSFLVALDAGSNLLWVPCQ-CIQCAPLSASYYTSLDRNLSEYDPSSSSSSKNVSCSHPLCKS 181 (538)
Q Consensus 103 ~~~~~~~yy~~v~iGtP~q~~~v~lDTGS~~~Wv~c~-C~~C~~~~~~~~~~~~~~~~~f~ps~SsT~~~~~C~~~~C~~ 181 (538)
.|+.+.+||++|.||||+|++.|++||||+++||+|. |..|... |..++.|+|++|+|++..
T Consensus 2 ~~~~~~~y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~--------c~~~~~y~~~~SsT~~~~--------- 64 (326)
T cd05487 2 TNYLDTQYYGEIGIGTPPQTFKVVFDTGSSNLWVPSSKCSPLYTA--------CVTHNLYDASDSSTYKEN--------- 64 (326)
T ss_pred cccCCCeEEEEEEECCCCcEEEEEEeCCccceEEccCCCcCcchh--------hcccCcCCCCCCeeeeEC---------
Confidence 3778899999999999999999999999999999987 7653211 113468999999999954
Q ss_pred CCCCCCCCCCCceeEecCCCCceEEEEEEEEEEEeccCCCCCCCccccccEEEEEEEeecC-CCCCCCCCceEEeeCCCC
Q 009271 182 RSSCKSLKDPCPYIADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIGCGRKQTG-SYLDGAAPDGVMGLGLGD 260 (538)
Q Consensus 182 ~~~C~~~~~~c~y~~~Y~dg~ss~~G~l~~D~v~l~~~~~~~~~~~~~~~~~fGc~~~~~g-~~~~~~~~dGIlGLG~~~ 260 (538)
.|.|++.|++| ++.|.+++|+|+|++.. + ++.|||.....+ .|. ....|||||||++.
T Consensus 65 ---------~~~~~~~Yg~g--~~~G~~~~D~v~~g~~~--------~-~~~fg~~~~~~~~~~~-~~~~dGilGLg~~~ 123 (326)
T cd05487 65 ---------GTEFTIHYASG--TVKGFLSQDIVTVGGIP--------V-TQMFGEVTALPAIPFM-LAKFDGVLGMGYPK 123 (326)
T ss_pred ---------CEEEEEEeCCc--eEEEEEeeeEEEECCEE--------e-eEEEEEEEeccCCccc-eeecceEEecCChh
Confidence 48999999996 48999999999998752 2 467999887643 222 22579999999876
Q ss_pred C------ChHHHHHhcCCCC-CceEEeecCC----CCccEEeCCCCCCCce----eeeeeecCCCCceEEEeEeEEEECC
Q 009271 261 V------SVPSLLAKAGLIQ-NSFSICFDEN----DSGSVFFGDQGPATQQ----STSFLPIGEKYDAYFVGVESYCIGN 325 (538)
Q Consensus 261 ~------Sl~sqL~~~g~i~-~~FS~cl~~~----~~G~l~fG~~d~~~~~----~tplv~~~~~~~~y~V~l~~i~Vgg 325 (538)
. +++.+|+++|+|+ ++||+||.++ ..|.|+||++|+.++. ++|+. ...+|.|++++|.||+
T Consensus 124 ~s~~~~~~~~~~L~~qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~y~g~l~~~~~~----~~~~w~v~l~~i~vg~ 199 (326)
T cd05487 124 QAIGGVTPVFDNIMSQGVLKEDVFSVYYSRDSSHSLGGEIVLGGSDPQHYQGDFHYINTS----KTGFWQIQMKGVSVGS 199 (326)
T ss_pred hcccCCCCHHHHHHhcCCCCCCEEEEEEeCCCCCCCCcEEEECCcChhhccCceEEEECC----cCceEEEEecEEEECC
Confidence 4 4677899999996 9999999863 4699999999998764 44442 2479999999999999
Q ss_pred eEeec-CCceEEEcCCCccccccHHHHHHHHHHHHHhhcccccccccccccccccccccccccCccEEEEEcCCeeeeee
Q 009271 326 SCLTQ-SGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMRLIFSKNQSFVVR 404 (538)
Q Consensus 326 ~~l~~-~~~~aiiDSGTs~t~LP~~~y~~l~~~~~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~it~~f~gg~~~~v~ 404 (538)
+.+.. ....+||||||++++||+++|++|.+++..+.. ..+|..+|.....+|.|+|+| |+..+.|+
T Consensus 200 ~~~~~~~~~~aiiDSGts~~~lP~~~~~~l~~~~~~~~~-----------~~~y~~~C~~~~~~P~i~f~f-gg~~~~v~ 267 (326)
T cd05487 200 STLLCEDGCTAVVDTGASFISGPTSSISKLMEALGAKER-----------LGDYVVKCNEVPTLPDISFHL-GGKEYTLS 267 (326)
T ss_pred EEEecCCCCEEEECCCccchhCcHHHHHHHHHHhCCccc-----------CCCEEEeccccCCCCCEEEEE-CCEEEEeC
Confidence 98753 345799999999999999999999887753221 124555665556789999999 77999999
Q ss_pred cceeEEeecCCcceEE-EEEEecC-----CCceeEcceeeeeeEEEEeCCCCEEEEeec
Q 009271 405 NHIFSFPENEGFTVFC-LTVMSTD-----GDYGIIGQNFMMGHRIVFDRENLKLAWSHS 457 (538)
Q Consensus 405 ~~~y~~~~~~~~~~~C-l~i~~~~-----~~~~IlG~~fl~~~yvVFD~e~~rIGfa~~ 457 (538)
+++|++...+....+| ++|+..+ ++.||||+.|||++|+|||++++|||||++
T Consensus 268 ~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~ilG~~flr~~y~vfD~~~~~IGfA~a 326 (326)
T cd05487 268 SSDYVLQDSDFSDKLCTVAFHAMDIPPPTGPLWVLGATFIRKFYTEFDRQNNRIGFALA 326 (326)
T ss_pred HHHhEEeccCCCCCEEEEEEEeCCCCCCCCCeEEEehHHhhccEEEEeCCCCEEeeeeC
Confidence 9999998654335789 5787532 347999999999999999999999999985
No 15
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=100.00 E-value=2.5e-50 Score=405.50 Aligned_cols=260 Identities=30% Similarity=0.610 Sum_probs=219.4
Q ss_pred EEEEEEEecCCCeEEEEEEEcCCCceeEecC--CCCCCCCccccccccCCCCCCCCCCCCCCCccccCCCCCCCCCCCCC
Q 009271 109 LHYTWIDIGTPNVSFLVALDAGSNLLWVPCQ--CIQCAPLSASYYTSLDRNLSEYDPSSSSSSKNVSCSHPLCKSRSSCK 186 (538)
Q Consensus 109 ~yy~~v~iGtP~q~~~v~lDTGS~~~Wv~c~--C~~C~~~~~~~~~~~~~~~~~f~ps~SsT~~~~~C~~~~C~~~~~C~ 186 (538)
.||++|.||||||++.|++||||+++||+|. |..|
T Consensus 2 ~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~c~~~c~~c------------------------------------------- 38 (273)
T cd05475 2 YYYVTINIGNPPKPYFLDIDTGSDLTWLQCDAPCTGC------------------------------------------- 38 (273)
T ss_pred ceEEEEEcCCCCeeEEEEEccCCCceEEeCCCCCCCC-------------------------------------------
Confidence 5999999999999999999999999999983 4333
Q ss_pred CCCCCCceeEecCCCCceEEEEEEEEEEEeccCCCCCCCccccccEEEEEEEeecCCCC-CCCCCceEEeeCCCCCChHH
Q 009271 187 SLKDPCPYIADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIGCGRKQTGSYL-DGAAPDGVMGLGLGDVSVPS 265 (538)
Q Consensus 187 ~~~~~c~y~~~Y~dg~ss~~G~l~~D~v~l~~~~~~~~~~~~~~~~~fGc~~~~~g~~~-~~~~~dGIlGLG~~~~Sl~s 265 (538)
.|.|++.|+|+ +++.|.+++|+|+|+...+. ...+++.|||+..+.+.+. .....|||||||++++|+++
T Consensus 39 ----~c~~~i~Ygd~-~~~~G~~~~D~v~~~~~~~~----~~~~~~~Fgc~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~ 109 (273)
T cd05475 39 ----QCDYEIEYADG-GSSMGVLVTDIFSLKLTNGS----RAKPRIAFGCGYDQQGPLLNPPPPTDGILGLGRGKISLPS 109 (273)
T ss_pred ----cCccEeEeCCC-CceEEEEEEEEEEEeecCCC----cccCCEEEEeeeccCCcccCCCccCCEEEECCCCCCCHHH
Confidence 28899999986 68899999999999754221 2357899999988776542 23367999999999999999
Q ss_pred HHHhcCCCCCceEEeecCCCCccEEeCCCCCC--CceeeeeeecCCCCceEEEeEeEEEECCeEeecCCceEEEcCCCcc
Q 009271 266 LLAKAGLIQNSFSICFDENDSGSVFFGDQGPA--TQQSTSFLPIGEKYDAYFVGVESYCIGNSCLTQSGFQALVDSGASF 343 (538)
Q Consensus 266 qL~~~g~i~~~FS~cl~~~~~G~l~fG~~d~~--~~~~tplv~~~~~~~~y~V~l~~i~Vgg~~l~~~~~~aiiDSGTs~ 343 (538)
||+++++|+++||+||.++..|.|+||+.... ...|+|+..... ..+|.|++++|+||++.+......+||||||++
T Consensus 110 ql~~~~~i~~~Fs~~l~~~~~g~l~~G~~~~~~g~i~ytpl~~~~~-~~~y~v~l~~i~vg~~~~~~~~~~~ivDTGTt~ 188 (273)
T cd05475 110 QLASQGIIKNVIGHCLSSNGGGFLFFGDDLVPSSGVTWTPMRRESQ-KKHYSPGPASLLFNGQPTGGKGLEVVFDSGSSY 188 (273)
T ss_pred HHHhcCCcCceEEEEccCCCCeEEEECCCCCCCCCeeecccccCCC-CCeEEEeEeEEEECCEECcCCCceEEEECCCce
Confidence 99999999999999999877799999965332 356999975432 369999999999999976656678999999999
Q ss_pred ccccHHHHHHHHHHHHHhhcccccccccccccccccccccccccCccEEEEEcCC---eeeeeecceeEEeecCCcceEE
Q 009271 344 TFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMRLIFSKN---QSFVVRNHIFSFPENEGFTVFC 420 (538)
Q Consensus 344 t~LP~~~y~~l~~~~~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~it~~f~gg---~~~~v~~~~y~~~~~~~~~~~C 420 (538)
++||+++| +|+|+|+|+++ +++++++++|++...+ +..|
T Consensus 189 t~lp~~~y------------------------------------~p~i~~~f~~~~~~~~~~l~~~~y~~~~~~--~~~C 230 (273)
T cd05475 189 TYFNAQAY------------------------------------FKPLTLKFGKGWRTRLLEIPPENYLIISEK--GNVC 230 (273)
T ss_pred EEcCCccc------------------------------------cccEEEEECCCCceeEEEeCCCceEEEcCC--CCEE
Confidence 99999877 58999999764 6999999999987543 5689
Q ss_pred EEEEecC----CCceeEcceeeeeeEEEEeCCCCEEEEeecCC
Q 009271 421 LTVMSTD----GDYGIIGQNFMMGHRIVFDRENLKLAWSHSKC 459 (538)
Q Consensus 421 l~i~~~~----~~~~IlG~~fl~~~yvVFD~e~~rIGfa~~~C 459 (538)
++++... .+.||||+.|||++|+|||++++||||++++|
T Consensus 231 l~~~~~~~~~~~~~~ilG~~~l~~~~~vfD~~~~riGfa~~~C 273 (273)
T cd05475 231 LGILNGSEIGLGNTNIIGDISMQGLMVIYDNEKQQIGWVRSDC 273 (273)
T ss_pred EEEecCCCcCCCceEEECceEEEeeEEEEECcCCEeCcccCCC
Confidence 9987653 24799999999999999999999999999999
No 16
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease. Beta-secretase also called BACE (beta-site of APP cleaving enzyme) or memapsin-2. Beta-secretase is an aspartic-acid protease important in the pathogenesis of Alzheimer's disease, and in the formation of myelin sheaths in peripheral nerve cells. It cleaves amyloid precursor protein (APP) to reveal the N-terminus of the beta-amyloid peptides. The beta-amyloid peptides are the major components of the amyloid plaques formed in the brain of patients with Alzheimer's disease (AD). Since BACE mediates one of the cleavages responsible for generation of AD, it is regarded as a potential target for pharmacological intervention in AD. Beta-secretase is a member of pepsin family of aspartic proteases. Same as other aspartic proteases, beta-secretase is a bilobal enzyme, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two
Probab=100.00 E-value=3.7e-50 Score=420.45 Aligned_cols=313 Identities=20% Similarity=0.256 Sum_probs=240.1
Q ss_pred cEEEEEEEecCCCeEEEEEEEcCCCceeEecC-CCCCCCCccccccccCCCCCCCCCCCCCCCccccCCCCCCCCCCCCC
Q 009271 108 WLHYTWIDIGTPNVSFLVALDAGSNLLWVPCQ-CIQCAPLSASYYTSLDRNLSEYDPSSSSSSKNVSCSHPLCKSRSSCK 186 (538)
Q Consensus 108 ~~yy~~v~iGtP~q~~~v~lDTGS~~~Wv~c~-C~~C~~~~~~~~~~~~~~~~~f~ps~SsT~~~~~C~~~~C~~~~~C~ 186 (538)
..||++|.||||+|+|.|+|||||+++||+|. |..| ++.|+|++|+|++..
T Consensus 2 ~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~~~~~--------------~~~f~~~~SsT~~~~-------------- 53 (364)
T cd05473 2 QGYYIEMLIGTPPQKLNILVDTGSSNFAVAAAPHPFI--------------HTYFHRELSSTYRDL-------------- 53 (364)
T ss_pred CceEEEEEecCCCceEEEEEecCCcceEEEcCCCccc--------------cccCCchhCcCcccC--------------
Confidence 46999999999999999999999999999997 5322 358999999999965
Q ss_pred CCCCCCceeEecCCCCceEEEEEEEEEEEeccCCCCCCCccccccEEEEEEEeecCCCCCCCCCceEEeeCCCCC-----
Q 009271 187 SLKDPCPYIADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDV----- 261 (538)
Q Consensus 187 ~~~~~c~y~~~Y~dg~ss~~G~l~~D~v~l~~~~~~~~~~~~~~~~~fGc~~~~~g~~~~~~~~dGIlGLG~~~~----- 261 (538)
.|.|+++|++| ++.|.+++|+|+|++.. .....+.|++.....+.+..+...|||||||++.+
T Consensus 54 ----~~~~~i~Yg~G--s~~G~~~~D~v~ig~~~------~~~~~~~~~~~~~~~~~~~~~~~~dGIlGLg~~~l~~~~~ 121 (364)
T cd05473 54 ----GKGVTVPYTQG--SWEGELGTDLVSIPKGP------NVTFRANIAAITESENFFLNGSNWEGILGLAYAELARPDS 121 (364)
T ss_pred ----CceEEEEECcc--eEEEEEEEEEEEECCCC------ccceEEeeEEEeccccceecccccceeeeecccccccCCC
Confidence 38999999986 46899999999998531 11233456777666665544446799999998765
Q ss_pred ---ChHHHHHhcCCCCCceEEeecC-----------CCCccEEeCCCCCCCc----eeeeeeecCCCCceEEEeEeEEEE
Q 009271 262 ---SVPSLLAKAGLIQNSFSICFDE-----------NDSGSVFFGDQGPATQ----QSTSFLPIGEKYDAYFVGVESYCI 323 (538)
Q Consensus 262 ---Sl~sqL~~~g~i~~~FS~cl~~-----------~~~G~l~fG~~d~~~~----~~tplv~~~~~~~~y~V~l~~i~V 323 (538)
+++.+|.+|+.++++||++|.. ...|.|+||++|+.++ .|+|++. ..+|.|.+++|.|
T Consensus 122 ~~~~~~~~l~~q~~~~~~FS~~l~~~~~~~~~~~~~~~~g~l~fGg~D~~~~~g~l~~~p~~~----~~~~~v~l~~i~v 197 (364)
T cd05473 122 SVEPFFDSLVKQTGIPDVFSLQMCGAGLPVNGSASGTVGGSMVIGGIDPSLYKGDIWYTPIRE----EWYYEVIILKLEV 197 (364)
T ss_pred CCCCHHHHHHhccCCccceEEEecccccccccccccCCCcEEEeCCcCHhhcCCCceEEecCc----ceeEEEEEEEEEE
Confidence 4567899998888899998741 1369999999998764 4889853 3689999999999
Q ss_pred CCeEeecC-----CceEEEcCCCccccccHHHHHHHHHHHHHhhcccccccc--cccccccccccccccccCccEEEEEc
Q 009271 324 GNSCLTQS-----GFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQ--GNSWKYCYNASSEEMLKVPDMRLIFS 396 (538)
Q Consensus 324 gg~~l~~~-----~~~aiiDSGTs~t~LP~~~y~~l~~~~~~~~~~~~~~~~--~~~~~~Cy~~~~~~~~~~P~it~~f~ 396 (538)
|++.+... ...+||||||++++||+++|++|.+++.++......... ......|+.........+|+|+|+|+
T Consensus 198 g~~~~~~~~~~~~~~~~ivDSGTs~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~ 277 (364)
T cd05473 198 GGQSLNLDCKEYNYDKAIVDSGTTNLRLPVKVFNAAVDAIKAASLIEDFPDGFWLGSQLACWQKGTTPWEIFPKISIYLR 277 (364)
T ss_pred CCEecccccccccCccEEEeCCCcceeCCHHHHHHHHHHHHhhcccccCCccccCcceeecccccCchHhhCCcEEEEEc
Confidence 99988632 135999999999999999999999999887543211111 01123687654333346999999997
Q ss_pred CC-----eeeeeecceeEEeecC-CcceEEEEEEec-CCCceeEcceeeeeeEEEEeCCCCEEEEeecCCCcccc
Q 009271 397 KN-----QSFVVRNHIFSFPENE-GFTVFCLTVMST-DGDYGIIGQNFMMGHRIVFDRENLKLAWSHSKCEEVID 464 (538)
Q Consensus 397 gg-----~~~~v~~~~y~~~~~~-~~~~~Cl~i~~~-~~~~~IlG~~fl~~~yvVFD~e~~rIGfa~~~C~~~~~ 464 (538)
|+ .++.++++.|+..... +....|+++... ..+.||||+.|||++|+|||++++|||||+++|.+...
T Consensus 278 g~~~~~~~~l~l~p~~Y~~~~~~~~~~~~C~~~~~~~~~~~~ILG~~flr~~yvvfD~~~~rIGfa~~~C~~~~~ 352 (364)
T cd05473 278 DENSSQSFRITILPQLYLRPVEDHGTQLDCYKFAISQSTNGTVIGAVIMEGFYVVFDRANKRVGFAVSTCAEHDG 352 (364)
T ss_pred cCCCCceEEEEECHHHhhhhhccCCCcceeeEEeeecCCCceEEeeeeEcceEEEEECCCCEEeeEecccccccC
Confidence 63 3678889999875432 124689754332 23579999999999999999999999999999987544
No 17
>PTZ00147 plasmepsin-1; Provisional
Probab=100.00 E-value=1.1e-48 Score=415.53 Aligned_cols=302 Identities=22% Similarity=0.336 Sum_probs=239.9
Q ss_pred ceeeeccccccEEEEEEEecCCCeEEEEEEEcCCCceeEecC-CCC--CCCCccccccccCCCCCCCCCCCCCCCccccC
Q 009271 98 QTHFFGNQFYWLHYTWIDIGTPNVSFLVALDAGSNLLWVPCQ-CIQ--CAPLSASYYTSLDRNLSEYDPSSSSSSKNVSC 174 (538)
Q Consensus 98 ~~~~~~~~~~~~yy~~v~iGtP~q~~~v~lDTGS~~~Wv~c~-C~~--C~~~~~~~~~~~~~~~~~f~ps~SsT~~~~~C 174 (538)
..+++.|+.+.+||++|.||||||+|.|++||||+++||+|. |.. |. .++.|||++|+|++..
T Consensus 128 ~~v~L~n~~n~~Y~~~I~IGTP~Q~f~Vi~DTGSsdlWVps~~C~~~~C~------------~~~~yd~s~SsT~~~~-- 193 (453)
T PTZ00147 128 DNVELKDLANVMSYGEAKLGDNGQKFNFIFDTGSANLWVPSIKCTTEGCE------------TKNLYDSSKSKTYEKD-- 193 (453)
T ss_pred CeeeccccCCCEEEEEEEECCCCeEEEEEEeCCCCcEEEeecCCCccccc------------CCCccCCccCcceEEC--
Confidence 456777888999999999999999999999999999999998 863 43 2468999999999864
Q ss_pred CCCCCCCCCCCCCCCCCCceeEecCCCCceEEEEEEEEEEEeccCCCCCCCccccccEEEEEEEeecCC--CCCCCCCce
Q 009271 175 SHPLCKSRSSCKSLKDPCPYIADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIGCGRKQTGS--YLDGAAPDG 252 (538)
Q Consensus 175 ~~~~C~~~~~C~~~~~~c~y~~~Y~dg~ss~~G~l~~D~v~l~~~~~~~~~~~~~~~~~fGc~~~~~g~--~~~~~~~dG 252 (538)
.|.|++.|++| ++.|.+++|+|+|++.. .+ ..|+|.....+. +......||
T Consensus 194 ----------------~~~f~i~Yg~G--svsG~~~~DtVtiG~~~--------v~-~qF~~~~~~~~f~~~~~~~~~DG 246 (453)
T PTZ00147 194 ----------------GTKVEMNYVSG--TVSGFFSKDLVTIGNLS--------VP-YKFIEVTDTNGFEPFYTESDFDG 246 (453)
T ss_pred ----------------CCEEEEEeCCC--CEEEEEEEEEEEECCEE--------EE-EEEEEEEeccCcccccccccccc
Confidence 48899999996 48999999999998752 33 579998876652 223336799
Q ss_pred EEeeCCCCCC------hHHHHHhcCCCC-CceEEeecCC--CCccEEeCCCCCCCc----eeeeeeecCCCCceEEEeEe
Q 009271 253 VMGLGLGDVS------VPSLLAKAGLIQ-NSFSICFDEN--DSGSVFFGDQGPATQ----QSTSFLPIGEKYDAYFVGVE 319 (538)
Q Consensus 253 IlGLG~~~~S------l~sqL~~~g~i~-~~FS~cl~~~--~~G~l~fG~~d~~~~----~~tplv~~~~~~~~y~V~l~ 319 (538)
|||||+++++ ++.+|+++|+|+ ++||+||.++ ..|.|+|||+|+.++ .|+|+.. ..+|.|.++
T Consensus 247 ILGLG~~~~S~~~~~p~~~~L~~qg~I~~~vFS~~L~~~~~~~G~L~fGGiD~~ky~G~l~y~pl~~----~~~W~V~l~ 322 (453)
T PTZ00147 247 IFGLGWKDLSIGSVDPYVVELKNQNKIEQAVFTFYLPPEDKHKGYLTIGGIEERFYEGPLTYEKLNH----DLYWQVDLD 322 (453)
T ss_pred eecccCCccccccCCCHHHHHHHcCCCCccEEEEEecCCCCCCeEEEECCcChhhcCCceEEEEcCC----CceEEEEEE
Confidence 9999998754 567999999997 8999999863 579999999998865 3788742 368999998
Q ss_pred EEEECCeEeecCCceEEEcCCCccccccHHHHHHHHHHHHHhhcccccccccccccccccccccccccCccEEEEEcCCe
Q 009271 320 SYCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMRLIFSKNQ 399 (538)
Q Consensus 320 ~i~Vgg~~l~~~~~~aiiDSGTs~t~LP~~~y~~l~~~~~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~it~~f~gg~ 399 (538)
+.+|+... ....+||||||+++++|+++++++.+++.... ..........|+. ..+|+|+|+| +|.
T Consensus 323 -~~vg~~~~--~~~~aIiDSGTsli~lP~~~~~ai~~~l~~~~----~~~~~~y~~~C~~------~~lP~~~f~f-~g~ 388 (453)
T PTZ00147 323 -VHFGNVSS--EKANVIVDSGTSVITVPTEFLNKFVESLDVFK----VPFLPLYVTTCNN------TKLPTLEFRS-PNK 388 (453)
T ss_pred -EEECCEec--CceeEEECCCCchhcCCHHHHHHHHHHhCCee----cCCCCeEEEeCCC------CCCCeEEEEE-CCE
Confidence 57877543 45679999999999999999999988774321 1111111234553 3689999999 578
Q ss_pred eeeeecceeEEeecCCcceEE-EEEEecC--CCceeEcceeeeeeEEEEeCCCCEEEEeecC
Q 009271 400 SFVVRNHIFSFPENEGFTVFC-LTVMSTD--GDYGIIGQNFMMGHRIVFDRENLKLAWSHSK 458 (538)
Q Consensus 400 ~~~v~~~~y~~~~~~~~~~~C-l~i~~~~--~~~~IlG~~fl~~~yvVFD~e~~rIGfa~~~ 458 (538)
.+.|++++|+....+.....| +++++.+ .+.||||+.|||++|+|||++++|||||+++
T Consensus 389 ~~~L~p~~yi~~~~~~~~~~C~~~i~~~~~~~~~~ILGd~FLr~~YtVFD~~n~rIGfA~a~ 450 (453)
T PTZ00147 389 VYTLEPEYYLQPIEDIGSALCMLNIIPIDLEKNTFILGDPFMRKYFTVFDYDNHTVGFALAK 450 (453)
T ss_pred EEEECHHHheeccccCCCcEEEEEEEECCCCCCCEEECHHHhccEEEEEECCCCEEEEEEec
Confidence 899999999876443324689 5788754 3479999999999999999999999999986
No 18
>PTZ00013 plasmepsin 4 (PM4); Provisional
Probab=100.00 E-value=4.4e-48 Score=410.26 Aligned_cols=302 Identities=19% Similarity=0.323 Sum_probs=236.7
Q ss_pred ceeeeccccccEEEEEEEecCCCeEEEEEEEcCCCceeEecC-CC--CCCCCccccccccCCCCCCCCCCCCCCCccccC
Q 009271 98 QTHFFGNQFYWLHYTWIDIGTPNVSFLVALDAGSNLLWVPCQ-CI--QCAPLSASYYTSLDRNLSEYDPSSSSSSKNVSC 174 (538)
Q Consensus 98 ~~~~~~~~~~~~yy~~v~iGtP~q~~~v~lDTGS~~~Wv~c~-C~--~C~~~~~~~~~~~~~~~~~f~ps~SsT~~~~~C 174 (538)
..+++.++.+.+||++|.||||+|+|.|++||||+++||+|. |. .|.. .+.|+|++|+|++..
T Consensus 127 ~~~~l~d~~n~~Yy~~i~IGTP~Q~f~vi~DTGSsdlWV~s~~C~~~~C~~------------~~~yd~s~SsT~~~~-- 192 (450)
T PTZ00013 127 DVIELDDVANIMFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCDSIGCSI------------KNLYDSSKSKSYEKD-- 192 (450)
T ss_pred CceeeeccCCCEEEEEEEECCCCeEEEEEEeCCCCceEEecccCCcccccc------------CCCccCccCcccccC--
Confidence 446677888899999999999999999999999999999998 85 4543 368999999999854
Q ss_pred CCCCCCCCCCCCCCCCCCceeEecCCCCceEEEEEEEEEEEeccCCCCCCCccccccEEEEEEEeecC--CCCCCCCCce
Q 009271 175 SHPLCKSRSSCKSLKDPCPYIADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIGCGRKQTG--SYLDGAAPDG 252 (538)
Q Consensus 175 ~~~~C~~~~~C~~~~~~c~y~~~Y~dg~ss~~G~l~~D~v~l~~~~~~~~~~~~~~~~~fGc~~~~~g--~~~~~~~~dG 252 (538)
.|.|.+.|++| ++.|.+++|+|+|++.. . ...|||+....+ ........||
T Consensus 193 ----------------~~~~~i~YG~G--sv~G~~~~Dtv~iG~~~--------~-~~~f~~~~~~~~~~~~~~~~~~dG 245 (450)
T PTZ00013 193 ----------------GTKVDITYGSG--TVKGFFSKDLVTLGHLS--------M-PYKFIEVTDTDDLEPIYSSSEFDG 245 (450)
T ss_pred ----------------CcEEEEEECCc--eEEEEEEEEEEEECCEE--------E-ccEEEEEEeccccccceecccccc
Confidence 48999999986 38999999999998752 2 357888876543 2222336799
Q ss_pred EEeeCCCCC------ChHHHHHhcCCCC-CceEEeecCC--CCccEEeCCCCCCCce----eeeeeecCCCCceEEEeEe
Q 009271 253 VMGLGLGDV------SVPSLLAKAGLIQ-NSFSICFDEN--DSGSVFFGDQGPATQQ----STSFLPIGEKYDAYFVGVE 319 (538)
Q Consensus 253 IlGLG~~~~------Sl~sqL~~~g~i~-~~FS~cl~~~--~~G~l~fG~~d~~~~~----~tplv~~~~~~~~y~V~l~ 319 (538)
|||||++.+ +++.+|+++|+|+ ++||+||.++ ..|.|+|||+|+.++. |+|+.. ..+|.|.++
T Consensus 246 IlGLg~~~~s~~~~~p~~~~L~~qg~I~~~vFS~~L~~~~~~~G~L~fGGiD~~~y~G~L~y~pv~~----~~yW~I~l~ 321 (450)
T PTZ00013 246 ILGLGWKDLSIGSIDPIVVELKNQNKIDNALFTFYLPVHDVHAGYLTIGGIEEKFYEGNITYEKLNH----DLYWQIDLD 321 (450)
T ss_pred eecccCCccccccCCCHHHHHHhccCcCCcEEEEEecCCCCCCCEEEECCcCccccccceEEEEcCc----CceEEEEEE
Confidence 999999865 4678999999997 8999999853 5799999999988753 888742 368999998
Q ss_pred EEEECCeEeecCCceEEEcCCCccccccHHHHHHHHHHHHHhhcccccccccccccccccccccccccCccEEEEEcCCe
Q 009271 320 SYCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMRLIFSKNQ 399 (538)
Q Consensus 320 ~i~Vgg~~l~~~~~~aiiDSGTs~t~LP~~~y~~l~~~~~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~it~~f~gg~ 399 (538)
+.+|.... ....+||||||+++++|+++++++.+++... ...........|+. ..+|+|+|+| +|.
T Consensus 322 -v~~G~~~~--~~~~aIlDSGTSli~lP~~~~~~i~~~l~~~----~~~~~~~y~~~C~~------~~lP~i~F~~-~g~ 387 (450)
T PTZ00013 322 -VHFGKQTM--QKANVIVDSGTTTITAPSEFLNKFFANLNVI----KVPFLPFYVTTCDN------KEMPTLEFKS-ANN 387 (450)
T ss_pred -EEECceec--cccceEECCCCccccCCHHHHHHHHHHhCCe----ecCCCCeEEeecCC------CCCCeEEEEE-CCE
Confidence 77775543 3567999999999999999999888766421 11111111234542 3689999999 668
Q ss_pred eeeeecceeEEeecCCcceEE-EEEEecC--CCceeEcceeeeeeEEEEeCCCCEEEEeecC
Q 009271 400 SFVVRNHIFSFPENEGFTVFC-LTVMSTD--GDYGIIGQNFMMGHRIVFDRENLKLAWSHSK 458 (538)
Q Consensus 400 ~~~v~~~~y~~~~~~~~~~~C-l~i~~~~--~~~~IlG~~fl~~~yvVFD~e~~rIGfa~~~ 458 (538)
++.+++++|+.......+..| +++++.+ ++.||||+.|||++|+|||++++|||||+++
T Consensus 388 ~~~L~p~~Yi~~~~~~~~~~C~~~i~~~~~~~~~~ILGd~FLr~~Y~VFD~~n~rIGfA~a~ 449 (450)
T PTZ00013 388 TYTLEPEYYMNPLLDVDDTLCMITMLPVDIDDNTFILGDPFMRKYFTVFDYDKESVGFAIAK 449 (450)
T ss_pred EEEECHHHheehhccCCCCeeEEEEEECCCCCCCEEECHHHhccEEEEEECCCCEEEEEEeC
Confidence 999999999875322224689 5777654 3479999999999999999999999999875
No 19
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=100.00 E-value=2.1e-48 Score=389.84 Aligned_cols=247 Identities=29% Similarity=0.546 Sum_probs=215.3
Q ss_pred EEEEEEEecCCCeEEEEEEEcCCCceeEecCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCC
Q 009271 109 LHYTWIDIGTPNVSFLVALDAGSNLLWVPCQCIQCAPLSASYYTSLDRNLSEYDPSSSSSSKNVSCSHPLCKSRSSCKSL 188 (538)
Q Consensus 109 ~yy~~v~iGtP~q~~~v~lDTGS~~~Wv~c~C~~C~~~~~~~~~~~~~~~~~f~ps~SsT~~~~~C~~~~C~~~~~C~~~ 188 (538)
.||++|.||||+|++.|++||||+++||+|
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~-------------------------------------------------- 30 (265)
T cd05476 1 EYLVTLSIGTPPQPFSLIVDTGSDLTWTQC-------------------------------------------------- 30 (265)
T ss_pred CeEEEEecCCCCcceEEEecCCCCCEEEcC--------------------------------------------------
Confidence 389999999999999999999999999974
Q ss_pred CCCCceeEecCCCCceEEEEEEEEEEEeccCCCCCCCccccccEEEEEEEeecCCCCCCCCCceEEeeCCCCCChHHHHH
Q 009271 189 KDPCPYIADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVSVPSLLA 268 (538)
Q Consensus 189 ~~~c~y~~~Y~dg~ss~~G~l~~D~v~l~~~~~~~~~~~~~~~~~fGc~~~~~g~~~~~~~~dGIlGLG~~~~Sl~sqL~ 268 (538)
|.|.+.|+|+ +.++|.+++|+|+|++.. ...+++.|||++.+.+ +.. ...+||||||+...|+++||.
T Consensus 31 ---~~~~~~Y~dg-~~~~G~~~~D~v~~g~~~------~~~~~~~Fg~~~~~~~-~~~-~~~~GIlGLg~~~~s~~~ql~ 98 (265)
T cd05476 31 ---CSYEYSYGDG-SSTSGVLATETFTFGDSS------VSVPNVAFGCGTDNEG-GSF-GGADGILGLGRGPLSLVSQLG 98 (265)
T ss_pred ---CceEeEeCCC-ceeeeeEEEEEEEecCCC------CccCCEEEEecccccC-Ccc-CCCCEEEECCCCcccHHHHhh
Confidence 5789999985 789999999999998752 1368899999999887 332 367999999999999999999
Q ss_pred hcCCCCCceEEeecC----CCCccEEeCCCCCC---CceeeeeeecCCCCceEEEeEeEEEECCeEee----------cC
Q 009271 269 KAGLIQNSFSICFDE----NDSGSVFFGDQGPA---TQQSTSFLPIGEKYDAYFVGVESYCIGNSCLT----------QS 331 (538)
Q Consensus 269 ~~g~i~~~FS~cl~~----~~~G~l~fG~~d~~---~~~~tplv~~~~~~~~y~V~l~~i~Vgg~~l~----------~~ 331 (538)
.++ ++||+||.+ +..|+|+||++|+. ...|+|++..+....+|.|+|++|+||++.+. ..
T Consensus 99 ~~~---~~Fs~~l~~~~~~~~~G~l~fGg~d~~~~~~l~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~ 175 (265)
T cd05476 99 STG---NKFSYCLVPHDDTGGSSPLILGDAADLGGSGVVYTPLVKNPANPTYYYVNLEGISVGGKRLPIPPSVFAIDSDG 175 (265)
T ss_pred ccc---CeeEEEccCCCCCCCCCeEEECCcccccCCCceEeecccCCCCCCceEeeeEEEEECCEEecCCchhcccccCC
Confidence 887 899999986 35799999999984 45699998754345789999999999999874 24
Q ss_pred CceEEEcCCCccccccHHHHHHHHHHHHHhhcccccccccccccccccccccccccCccEEEEEcCCeeeeeecceeEEe
Q 009271 332 GFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMRLIFSKNQSFVVRNHIFSFP 411 (538)
Q Consensus 332 ~~~aiiDSGTs~t~LP~~~y~~l~~~~~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~it~~f~gg~~~~v~~~~y~~~ 411 (538)
...+||||||++++||+++| |+|+|+|+|+.+|.+++++|++.
T Consensus 176 ~~~ai~DTGTs~~~lp~~~~-------------------------------------P~i~~~f~~~~~~~i~~~~y~~~ 218 (265)
T cd05476 176 SGGTIIDSGTTLTYLPDPAY-------------------------------------PDLTLHFDGGADLELPPENYFVD 218 (265)
T ss_pred CCcEEEeCCCcceEcCcccc-------------------------------------CCEEEEECCCCEEEeCcccEEEE
Confidence 56799999999999999987 88999997689999999999986
Q ss_pred ecCCcceEEEEEEec-CCCceeEcceeeeeeEEEEeCCCCEEEEeecCC
Q 009271 412 ENEGFTVFCLTVMST-DGDYGIIGQNFMMGHRIVFDRENLKLAWSHSKC 459 (538)
Q Consensus 412 ~~~~~~~~Cl~i~~~-~~~~~IlG~~fl~~~yvVFD~e~~rIGfa~~~C 459 (538)
... +.+|++++.. ..+.+|||++|||++|+|||++++|||||+++|
T Consensus 219 ~~~--~~~C~~~~~~~~~~~~ilG~~fl~~~~~vFD~~~~~iGfa~~~C 265 (265)
T cd05476 219 VGE--GVVCLAILSSSSGGVSILGNIQQQNFLVEYDLENSRLGFAPADC 265 (265)
T ss_pred CCC--CCEEEEEecCCCCCcEEEChhhcccEEEEEECCCCEEeeecCCC
Confidence 543 6799999887 456899999999999999999999999999999
No 20
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=100.00 E-value=3.1e-47 Score=383.99 Aligned_cols=263 Identities=22% Similarity=0.338 Sum_probs=216.9
Q ss_pred EEEEEEecCCCeEEEEEEEcCCCceeEecC-CCCCCCCccccccccCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCC
Q 009271 110 HYTWIDIGTPNVSFLVALDAGSNLLWVPCQ-CIQCAPLSASYYTSLDRNLSEYDPSSSSSSKNVSCSHPLCKSRSSCKSL 188 (538)
Q Consensus 110 yy~~v~iGtP~q~~~v~lDTGS~~~Wv~c~-C~~C~~~~~~~~~~~~~~~~~f~ps~SsT~~~~~C~~~~C~~~~~C~~~ 188 (538)
||++|.||||+|++.|+|||||+++||+|. |..|.... ...|+|++|+|++.++
T Consensus 1 Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~c~~~~~~~----------~~~y~~~~Sst~~~~~--------------- 55 (278)
T cd06097 1 YLTPVKIGTPPQTLNLDLDTGSSDLWVFSSETPAAQQGG----------HKLYDPSKSSTAKLLP--------------- 55 (278)
T ss_pred CeeeEEECCCCcEEEEEEeCCCCceeEeeCCCCchhhcc----------CCcCCCccCccceecC---------------
Confidence 789999999999999999999999999998 88775432 4679999999998642
Q ss_pred CCCCceeEecCCCCceEEEEEEEEEEEeccCCCCCCCccccccEEEEEEEeecCCCCCCCCCceEEeeCCCCC-------
Q 009271 189 KDPCPYIADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDV------- 261 (538)
Q Consensus 189 ~~~c~y~~~Y~dg~ss~~G~l~~D~v~l~~~~~~~~~~~~~~~~~fGc~~~~~g~~~~~~~~dGIlGLG~~~~------- 261 (538)
.|.|.+.|++| +.+.|.+++|+|+|++. ...++.|||++...+.+......|||||||+..+
T Consensus 56 --~~~~~i~Y~~G-~~~~G~~~~D~v~ig~~--------~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~~~~~~~~ 124 (278)
T cd06097 56 --GATWSISYGDG-SSASGIVYTDTVSIGGV--------EVPNQAIELATAVSASFFSDTASDGLLGLAFSSINTVQPPK 124 (278)
T ss_pred --CcEEEEEeCCC-CeEEEEEEEEEEEECCE--------EECCeEEEEEeecCccccccccccceeeeccccccccccCC
Confidence 48999999996 67899999999999874 3578999999988775444457899999998764
Q ss_pred --ChHHHHHhcCCCCCceEEeecCCCCccEEeCCCCCCCc----eeeeeeecCCCCceEEEeEeEEEECCeEe-ecCCce
Q 009271 262 --SVPSLLAKAGLIQNSFSICFDENDSGSVFFGDQGPATQ----QSTSFLPIGEKYDAYFVGVESYCIGNSCL-TQSGFQ 334 (538)
Q Consensus 262 --Sl~sqL~~~g~i~~~FS~cl~~~~~G~l~fG~~d~~~~----~~tplv~~~~~~~~y~V~l~~i~Vgg~~l-~~~~~~ 334 (538)
++..+|.+++. +++||+||.++..|+|+|||+|+.++ .|+|++.. ..+|.|++++|.||++.. ......
T Consensus 125 ~~~~~~~l~~~~~-~~~Fs~~l~~~~~G~l~fGg~D~~~~~g~l~~~pi~~~---~~~w~v~l~~i~v~~~~~~~~~~~~ 200 (278)
T cd06097 125 QKTFFENALSSLD-APLFTADLRKAAPGFYTFGYIDESKYKGEISWTPVDNS---SGFWQFTSTSYTVGGDAPWSRSGFS 200 (278)
T ss_pred CCCHHHHHHHhcc-CceEEEEecCCCCcEEEEeccChHHcCCceEEEEccCC---CcEEEEEEeeEEECCcceeecCCce
Confidence 35667887764 78999999977789999999998654 48887542 369999999999999843 345678
Q ss_pred EEEcCCCccccccHHHHHHHHHHHHHhhcccccccccccccccccccccccccCccEEEEEcCCeeeeeecceeEEeecC
Q 009271 335 ALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMRLIFSKNQSFVVRNHIFSFPENE 414 (538)
Q Consensus 335 aiiDSGTs~t~LP~~~y~~l~~~~~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~it~~f~gg~~~~v~~~~y~~~~~~ 414 (538)
+||||||+++++|++++++|.+++.... . .....+|.++|+.. +|+|+|+|
T Consensus 201 ~iiDSGTs~~~lP~~~~~~l~~~l~g~~----~----~~~~~~~~~~C~~~--~P~i~f~~------------------- 251 (278)
T cd06097 201 AIADTGTTLILLPDAIVEAYYSQVPGAY----Y----DSEYGGWVFPCDTT--LPDLSFAV------------------- 251 (278)
T ss_pred EEeecCCchhcCCHHHHHHHHHhCcCCc----c----cCCCCEEEEECCCC--CCCEEEEE-------------------
Confidence 9999999999999999999987763111 0 01134677778643 89999999
Q ss_pred CcceEEEEEEecCCCceeEcceeeeeeEEEEeCCCCEEEEee
Q 009271 415 GFTVFCLTVMSTDGDYGIIGQNFMMGHRIVFDRENLKLAWSH 456 (538)
Q Consensus 415 ~~~~~Cl~i~~~~~~~~IlG~~fl~~~yvVFD~e~~rIGfa~ 456 (538)
.||||++|||++|+|||++|+|||||+
T Consensus 252 ---------------~~ilGd~fl~~~y~vfD~~~~~ig~A~ 278 (278)
T cd06097 252 ---------------FSILGDVFLKAQYVVFDVGGPKLGFAP 278 (278)
T ss_pred ---------------EEEEcchhhCceeEEEcCCCceeeecC
Confidence 599999999999999999999999985
No 21
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins. SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases
Probab=100.00 E-value=1.3e-45 Score=374.96 Aligned_cols=267 Identities=24% Similarity=0.424 Sum_probs=221.5
Q ss_pred EEEEEEEecCCCeEEEEEEEcCCCceeEecCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCC
Q 009271 109 LHYTWIDIGTPNVSFLVALDAGSNLLWVPCQCIQCAPLSASYYTSLDRNLSEYDPSSSSSSKNVSCSHPLCKSRSSCKSL 188 (538)
Q Consensus 109 ~yy~~v~iGtP~q~~~v~lDTGS~~~Wv~c~C~~C~~~~~~~~~~~~~~~~~f~ps~SsT~~~~~C~~~~C~~~~~C~~~ 188 (538)
+|+++|.||||+|++.|++||||+++||+
T Consensus 2 ~Y~~~i~iGtp~q~~~v~~DTgS~~~wv~--------------------------------------------------- 30 (295)
T cd05474 2 YYSAELSVGTPPQKVTVLLDTGSSDLWVP--------------------------------------------------- 30 (295)
T ss_pred eEEEEEEECCCCcEEEEEEeCCCCcceee---------------------------------------------------
Confidence 68999999999999999999999999994
Q ss_pred CCCCceeEecCCCCceEEEEEEEEEEEeccCCCCCCCccccccEEEEEEEeecCCCCCCCCCceEEeeCCCCC-------
Q 009271 189 KDPCPYIADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDV------- 261 (538)
Q Consensus 189 ~~~c~y~~~Y~dg~ss~~G~l~~D~v~l~~~~~~~~~~~~~~~~~fGc~~~~~g~~~~~~~~dGIlGLG~~~~------- 261 (538)
.|++.|++| +++.|.+++|+|+|++. ...++.|||+++.. ..+||||||+.+.
T Consensus 31 ----~~~~~Y~~g-~~~~G~~~~D~v~~g~~--------~~~~~~fg~~~~~~-------~~~GilGLg~~~~~~~~~~~ 90 (295)
T cd05474 31 ----DFSISYGDG-TSASGTWGTDTVSIGGA--------TVKNLQFAVANSTS-------SDVGVLGIGLPGNEATYGTG 90 (295)
T ss_pred ----eeEEEeccC-CcEEEEEEEEEEEECCe--------EecceEEEEEecCC-------CCcceeeECCCCCcccccCC
Confidence 378899985 68999999999999875 25789999998832 4589999999886
Q ss_pred ----ChHHHHHhcCCCC-CceEEeecCC--CCccEEeCCCCCCCc----eeeeeeecCC--CCceEEEeEeEEEECCeEe
Q 009271 262 ----SVPSLLAKAGLIQ-NSFSICFDEN--DSGSVFFGDQGPATQ----QSTSFLPIGE--KYDAYFVGVESYCIGNSCL 328 (538)
Q Consensus 262 ----Sl~sqL~~~g~i~-~~FS~cl~~~--~~G~l~fG~~d~~~~----~~tplv~~~~--~~~~y~V~l~~i~Vgg~~l 328 (538)
+++.||.++|+|+ ++||+||.+. ..|.|+||++|..++ .++|++.... ...+|.|++++|.|+++.+
T Consensus 91 ~~~~s~~~~L~~~g~i~~~~Fsl~l~~~~~~~g~l~~Gg~d~~~~~g~~~~~p~~~~~~~~~~~~~~v~l~~i~v~~~~~ 170 (295)
T cd05474 91 YTYPNFPIALKKQGLIKKNAYSLYLNDLDASTGSILFGGVDTAKYSGDLVTLPIVNDNGGSEPSELSVTLSSISVNGSSG 170 (295)
T ss_pred CcCCCHHHHHHHCCcccceEEEEEeCCCCCCceeEEEeeeccceeeceeEEEeCcCcCCCCCceEEEEEEEEEEEEcCCC
Confidence 7999999999996 9999999874 579999999998764 4888875432 2378999999999999886
Q ss_pred e----cCCceEEEcCCCccccccHHHHHHHHHHHHHhhcccccccccccccccccccccccccCccEEEEEcCCeeeeee
Q 009271 329 T----QSGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMRLIFSKNQSFVVR 404 (538)
Q Consensus 329 ~----~~~~~aiiDSGTs~t~LP~~~y~~l~~~~~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~it~~f~gg~~~~v~ 404 (538)
. .....+||||||++++||+++|++|.+++.+..... ....+..|+. ... |.|+|+| +|.++.++
T Consensus 171 ~~~~~~~~~~~iiDSGt~~~~lP~~~~~~l~~~~~~~~~~~----~~~~~~~C~~-----~~~-p~i~f~f-~g~~~~i~ 239 (295)
T cd05474 171 NTTLLSKNLPALLDSGTTLTYLPSDIVDAIAKQLGATYDSD----EGLYVVDCDA-----KDD-GSLTFNF-GGATISVP 239 (295)
T ss_pred cccccCCCccEEECCCCccEeCCHHHHHHHHHHhCCEEcCC----CcEEEEeCCC-----CCC-CEEEEEE-CCeEEEEE
Confidence 3 245679999999999999999999999887654321 1122334544 334 9999999 56999999
Q ss_pred cceeEEeecC--CcceEE-EEEEecCCCceeEcceeeeeeEEEEeCCCCEEEEeec
Q 009271 405 NHIFSFPENE--GFTVFC-LTVMSTDGDYGIIGQNFMMGHRIVFDRENLKLAWSHS 457 (538)
Q Consensus 405 ~~~y~~~~~~--~~~~~C-l~i~~~~~~~~IlG~~fl~~~yvVFD~e~~rIGfa~~ 457 (538)
+++|++.... ....+| ++|++.+.+.||||++||+++|+|||.+++|||||++
T Consensus 240 ~~~~~~~~~~~~~~~~~C~~~i~~~~~~~~iLG~~fl~~~y~vfD~~~~~ig~a~a 295 (295)
T cd05474 240 LSDLVLPASTDDGGDGACYLGIQPSTSDYNILGDTFLRSAYVVYDLDNNEISLAQA 295 (295)
T ss_pred HHHhEeccccCCCCCCCeEEEEEeCCCCcEEeChHHhhcEEEEEECCCCEEEeecC
Confidence 9999987642 235789 7898876568999999999999999999999999985
No 22
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077.; InterPro: IPR001461 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A1 (pepsin family, clan AA). The type example is pepsin A from Homo sapiens (Human) . More than 70 aspartic peptidases, from all from eukaryotic organisms, have been identified. These include pepsins, cathepsins, and renins. The enzymes are synthesised with signal peptides, and the proenzymes are secreted or passed into the lysosomal/endosomal system, where acidification leads to autocatalytic activation. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residues in both the P1 and P1' positions []. Crystallography has shown the active site to form a groove across the junction of the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors within the active site []. Specificity is determined by several hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. Cysteine residues are well conserved within the pepsin family, pepsin itself containing three disulphide loops. The first loop is found in all but the fungal enzymes, and is usually around five residues in length, but is longer in barrierpepsin and candidapepsin; the second loop is also small and found only in the animal enzymes; and the third loop is the largest, found in all members of the family, except for the cysteine-free polyporopepsin. The loops are spread unequally throughout the two lobes, suggesting that they formed after the initial gene duplication and fusion event []. This family does not include the retroviral nor retrotransposon aspartic proteases which are much smaller and appear to be homologous to the single domain aspartic proteases.; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1CZI_E 3CMS_A 1CMS_A 4CMS_A 1YG9_A 2NR6_A 3LIZ_A 1FLH_A 3UTL_A 1QRP_E ....
Probab=100.00 E-value=2e-45 Score=376.60 Aligned_cols=296 Identities=28% Similarity=0.521 Sum_probs=243.5
Q ss_pred EEEEEEEecCCCeEEEEEEEcCCCceeEecC-CCCCCCCccccccccCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCC
Q 009271 109 LHYTWIDIGTPNVSFLVALDAGSNLLWVPCQ-CIQCAPLSASYYTSLDRNLSEYDPSSSSSSKNVSCSHPLCKSRSSCKS 187 (538)
Q Consensus 109 ~yy~~v~iGtP~q~~~v~lDTGS~~~Wv~c~-C~~C~~~~~~~~~~~~~~~~~f~ps~SsT~~~~~C~~~~C~~~~~C~~ 187 (538)
.|+++|.||||+|++.|++||||+.+||++. |..|.. |.....|++.+|+|++...
T Consensus 1 ~Y~~~v~iGtp~q~~~~~iDTGS~~~wv~~~~c~~~~~---------~~~~~~y~~~~S~t~~~~~-------------- 57 (317)
T PF00026_consen 1 QYYINVTIGTPPQTFRVLIDTGSSDTWVPSSNCNSCSS---------CASSGFYNPSKSSTFSNQG-------------- 57 (317)
T ss_dssp EEEEEEEETTTTEEEEEEEETTBSSEEEEBTTECSHTH---------HCTSC-BBGGGSTTEEEEE--------------
T ss_pred CeEEEEEECCCCeEEEEEEecccceeeeceeccccccc---------cccccccccccccccccce--------------
Confidence 4999999999999999999999999999987 766611 1124689999999999753
Q ss_pred CCCCCceeEecCCCCceEEEEEEEEEEEeccCCCCCCCccccccEEEEEEEeecCCCCCCCCCceEEeeCCCC-------
Q 009271 188 LKDPCPYIADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGD------- 260 (538)
Q Consensus 188 ~~~~c~y~~~Y~dg~ss~~G~l~~D~v~l~~~~~~~~~~~~~~~~~fGc~~~~~g~~~~~~~~dGIlGLG~~~------- 260 (538)
+.+.+.|++| + ++|.+++|+|+|++. ...++.||++....+........+||||||+..
T Consensus 58 ----~~~~~~y~~g-~-~~G~~~~D~v~ig~~--------~~~~~~f~~~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~ 123 (317)
T PF00026_consen 58 ----KPFSISYGDG-S-VSGNLVSDTVSIGGL--------TIPNQTFGLADSYSGDPFSPIPFDGILGLGFPSLSSSSTY 123 (317)
T ss_dssp ----EEEEEEETTE-E-EEEEEEEEEEEETTE--------EEEEEEEEEEEEEESHHHHHSSSSEEEE-SSGGGSGGGTS
T ss_pred ----eeeeeeccCc-c-cccccccceEeeeec--------cccccceeccccccccccccccccccccccCCcccccccC
Confidence 7799999986 4 999999999999875 356799999999766432223679999999643
Q ss_pred CChHHHHHhcCCCC-CceEEeecCCC--CccEEeCCCCCCCce----eeeeeecCCCCceEEEeEeEEEECCe-EeecCC
Q 009271 261 VSVPSLLAKAGLIQ-NSFSICFDEND--SGSVFFGDQGPATQQ----STSFLPIGEKYDAYFVGVESYCIGNS-CLTQSG 332 (538)
Q Consensus 261 ~Sl~sqL~~~g~i~-~~FS~cl~~~~--~G~l~fG~~d~~~~~----~tplv~~~~~~~~y~V~l~~i~Vgg~-~l~~~~ 332 (538)
.+++.+|.++|+|. ++||++|.+.. .|.|+||++|+.++. ++|++ ...+|.|.+++|.++++ ......
T Consensus 124 ~~~~~~l~~~g~i~~~~fsl~l~~~~~~~g~l~~Gg~d~~~~~g~~~~~~~~----~~~~w~v~~~~i~i~~~~~~~~~~ 199 (317)
T PF00026_consen 124 PTFLDQLVQQGLISSNVFSLYLNPSDSQNGSLTFGGYDPSKYDGDLVWVPLV----SSGYWSVPLDSISIGGESVFSSSG 199 (317)
T ss_dssp -SHHHHHHHTTSSSSSEEEEEEESTTSSEEEEEESSEEGGGEESEEEEEEBS----STTTTEEEEEEEEETTEEEEEEEE
T ss_pred CcceecchhhccccccccceeeeecccccchheeeccccccccCceeccCcc----cccccccccccccccccccccccc
Confidence 57889999999997 99999999864 699999999988764 66765 34789999999999999 444455
Q ss_pred ceEEEcCCCccccccHHHHHHHHHHHHHhhcccccccccccccccccccccccccCccEEEEEcCCeeeeeecceeEEee
Q 009271 333 FQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMRLIFSKNQSFVVRNHIFSFPE 412 (538)
Q Consensus 333 ~~aiiDSGTs~t~LP~~~y~~l~~~~~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~it~~f~gg~~~~v~~~~y~~~~ 412 (538)
..++|||||++++||.+++++|.+++...... .+|..+|.....+|.|+|+| ++.++.+++++|++..
T Consensus 200 ~~~~~Dtgt~~i~lp~~~~~~i~~~l~~~~~~-----------~~~~~~c~~~~~~p~l~f~~-~~~~~~i~~~~~~~~~ 267 (317)
T PF00026_consen 200 QQAILDTGTSYIYLPRSIFDAIIKALGGSYSD-----------GVYSVPCNSTDSLPDLTFTF-GGVTFTIPPSDYIFKI 267 (317)
T ss_dssp EEEEEETTBSSEEEEHHHHHHHHHHHTTEEEC-----------SEEEEETTGGGGSEEEEEEE-TTEEEEEEHHHHEEEE
T ss_pred eeeecccccccccccchhhHHHHhhhcccccc-----------eeEEEecccccccceEEEee-CCEEEEecchHhcccc
Confidence 78999999999999999999999887654332 36677777667899999999 6799999999999988
Q ss_pred cCCcceEE-EEEEe----cCCCceeEcceeeeeeEEEEeCCCCEEEEeec
Q 009271 413 NEGFTVFC-LTVMS----TDGDYGIIGQNFMMGHRIVFDRENLKLAWSHS 457 (538)
Q Consensus 413 ~~~~~~~C-l~i~~----~~~~~~IlG~~fl~~~yvVFD~e~~rIGfa~~ 457 (538)
.......| ++|.. ...+.+|||.+|||++|+|||.|++|||||++
T Consensus 268 ~~~~~~~C~~~i~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~ig~A~a 317 (317)
T PF00026_consen 268 EDGNGGYCYLGIQPMDSSDDSDDWILGSPFLRNYYVVFDYENNRIGFAQA 317 (317)
T ss_dssp SSTTSSEEEESEEEESSTTSSSEEEEEHHHHTTEEEEEETTTTEEEEEEE
T ss_pred cccccceeEeeeecccccccCCceEecHHHhhceEEEEeCCCCEEEEecC
Confidence 76544589 67777 23458999999999999999999999999985
No 23
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=100.00 E-value=1.4e-43 Score=356.74 Aligned_cols=265 Identities=29% Similarity=0.520 Sum_probs=221.1
Q ss_pred EEEEEEecCCCeEEEEEEEcCCCceeEecC-CCCCCCCccccccccCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCC
Q 009271 110 HYTWIDIGTPNVSFLVALDAGSNLLWVPCQ-CIQCAPLSASYYTSLDRNLSEYDPSSSSSSKNVSCSHPLCKSRSSCKSL 188 (538)
Q Consensus 110 yy~~v~iGtP~q~~~v~lDTGS~~~Wv~c~-C~~C~~~~~~~~~~~~~~~~~f~ps~SsT~~~~~C~~~~C~~~~~C~~~ 188 (538)
|+++|.||||+|++.|++||||+++||+|. |..|..+... ...|++..|+++..
T Consensus 1 Y~~~i~iGtp~q~~~l~~DTGS~~~wv~~~~c~~~~~~~~~--------~~~~~~~~s~~~~~----------------- 55 (283)
T cd05471 1 YYGEITIGTPPQKFSVIFDTGSSLLWVPSSNCTSCSCQKHP--------RFKYDSSKSSTYKD----------------- 55 (283)
T ss_pred CEEEEEECCCCcEEEEEEeCCCCCEEEecCCCCccccccCC--------CCccCccCCceeec-----------------
Confidence 789999999999999999999999999998 8877654310 11367777776653
Q ss_pred CCCCceeEecCCCCceEEEEEEEEEEEeccCCCCCCCccccccEEEEEEEeecCCCCCCCCCceEEeeCCCC------CC
Q 009271 189 KDPCPYIADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGD------VS 262 (538)
Q Consensus 189 ~~~c~y~~~Y~dg~ss~~G~l~~D~v~l~~~~~~~~~~~~~~~~~fGc~~~~~g~~~~~~~~dGIlGLG~~~------~S 262 (538)
..|.|.+.|++| ++.|.+++|+|+|++.. .+++.|||++...+.+.. ...+||||||+.. .+
T Consensus 56 -~~~~~~~~Y~~g--~~~g~~~~D~v~~~~~~--------~~~~~fg~~~~~~~~~~~-~~~~GilGLg~~~~~~~~~~s 123 (283)
T cd05471 56 -TGCTFSITYGDG--SVTGGLGTDTVTIGGLT--------IPNQTFGCATSESGDFSS-SGFDGILGLGFPSLSVDGVPS 123 (283)
T ss_pred -CCCEEEEEECCC--eEEEEEEEeEEEECCEE--------EeceEEEEEeccCCcccc-cccceEeecCCcccccccCCC
Confidence 359999999985 58899999999998752 678999999998764332 3679999999998 79
Q ss_pred hHHHHHhcCCCC-CceEEeecCC----CCccEEeCCCCCCC----ceeeeeeecCCCCceEEEeEeEEEECCe--EeecC
Q 009271 263 VPSLLAKAGLIQ-NSFSICFDEN----DSGSVFFGDQGPAT----QQSTSFLPIGEKYDAYFVGVESYCIGNS--CLTQS 331 (538)
Q Consensus 263 l~sqL~~~g~i~-~~FS~cl~~~----~~G~l~fG~~d~~~----~~~tplv~~~~~~~~y~V~l~~i~Vgg~--~l~~~ 331 (538)
+++||.++++|. ++||+||.+. ..|.|+||+.++.+ ..++|++.. ...+|.|.+++|.|+++ .....
T Consensus 124 ~~~~l~~~~~i~~~~Fs~~l~~~~~~~~~g~l~~Gg~d~~~~~~~~~~~p~~~~--~~~~~~v~l~~i~v~~~~~~~~~~ 201 (283)
T cd05471 124 FFDQLKSQGLISSPVFSFYLGRDGDGGNGGELTFGGIDPSKYTGDLTYTPVVSN--GPGYWQVPLDGISVGGKSVISSSG 201 (283)
T ss_pred HHHHHHHCCCCCCCEEEEEEcCCCCCCCCCEEEEcccCccccCCceEEEecCCC--CCCEEEEEeCeEEECCceeeecCC
Confidence 999999999986 9999999873 68999999999864 458998764 24799999999999997 34445
Q ss_pred CceEEEcCCCccccccHHHHHHHHHHHHHhhcccccccccccccccccccccccccCccEEEEEcCCeeeeeecceeEEe
Q 009271 332 GFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMRLIFSKNQSFVVRNHIFSFP 411 (538)
Q Consensus 332 ~~~aiiDSGTs~t~LP~~~y~~l~~~~~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~it~~f~gg~~~~v~~~~y~~~ 411 (538)
...+||||||++++||+++|++|.+++.+.... ...|+...|.....+|.|+|+|
T Consensus 202 ~~~~iiDsGt~~~~lp~~~~~~l~~~~~~~~~~---------~~~~~~~~~~~~~~~p~i~f~f---------------- 256 (283)
T cd05471 202 GGGAIVDSGTSLIYLPSSVYDAILKALGAAVSS---------SDGGYGVDCSPCDTLPDITFTF---------------- 256 (283)
T ss_pred CcEEEEecCCCCEeCCHHHHHHHHHHhCCcccc---------cCCcEEEeCcccCcCCCEEEEE----------------
Confidence 678999999999999999999999888765543 2346666666667899999999
Q ss_pred ecCCcceEEEEEEecCCCceeEcceeeeeeEEEEeCCCCEEEEee
Q 009271 412 ENEGFTVFCLTVMSTDGDYGIIGQNFMMGHRIVFDRENLKLAWSH 456 (538)
Q Consensus 412 ~~~~~~~~Cl~i~~~~~~~~IlG~~fl~~~yvVFD~e~~rIGfa~ 456 (538)
.+|||+.||+++|++||.++++|||++
T Consensus 257 ------------------~~ilG~~fl~~~y~vfD~~~~~igfa~ 283 (283)
T cd05471 257 ------------------LWILGDVFLRNYYTVFDLDNNRIGFAP 283 (283)
T ss_pred ------------------EEEccHhhhhheEEEEeCCCCEEeecC
Confidence 589999999999999999999999985
No 24
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A.
Probab=99.98 E-value=3.7e-32 Score=252.44 Aligned_cols=157 Identities=39% Similarity=0.762 Sum_probs=128.8
Q ss_pred EEEEEEecCCCeEEEEEEEcCCCceeEecCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCCCCCCCCC----CC
Q 009271 110 HYTWIDIGTPNVSFLVALDAGSNLLWVPCQCIQCAPLSASYYTSLDRNLSEYDPSSSSSSKNVSCSHPLCKSRS----SC 185 (538)
Q Consensus 110 yy~~v~iGtP~q~~~v~lDTGS~~~Wv~c~C~~C~~~~~~~~~~~~~~~~~f~ps~SsT~~~~~C~~~~C~~~~----~C 185 (538)
||++|.||||+|++.|+|||||+++|++| ..+.|+|++|+||+.++|++++|.... .|
T Consensus 1 Y~~~~~iGtP~~~~~lvvDtgs~l~W~~C------------------~~~~f~~~~Sst~~~v~C~s~~C~~~~~~~~~~ 62 (164)
T PF14543_consen 1 YYVSVSIGTPPQPFSLVVDTGSDLTWVQC------------------PDPPFDPSKSSTYRPVPCSSPQCSSAPSFCPCC 62 (164)
T ss_dssp EEEEEECTCTTEEEEEEEETT-SSEEEET----------------------STT-TTSSBEC-BTTSHHHHHCTSSBTCC
T ss_pred CEEEEEeCCCCceEEEEEECCCCceEEcC------------------CCcccCCccCCcccccCCCCcchhhcccccccC
Confidence 89999999999999999999999999997 137999999999999999999998542 45
Q ss_pred CCCCCCCceeEecCCCCceEEEEEEEEEEEeccCCCCCCCccccccEEEEEEEeecCCCCCCCCCceEEeeCCCCCChHH
Q 009271 186 KSLKDPCPYIADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVSVPS 265 (538)
Q Consensus 186 ~~~~~~c~y~~~Y~dg~ss~~G~l~~D~v~l~~~~~~~~~~~~~~~~~fGc~~~~~g~~~~~~~~dGIlGLG~~~~Sl~s 265 (538)
...+..|.|.+.|+++ +++.|.+++|+|+++...... ....++.|||++.+.|.+. ..+||||||++++||++
T Consensus 63 ~~~~~~C~y~~~y~~~-s~~~G~l~~D~~~~~~~~~~~---~~~~~~~FGC~~~~~g~~~---~~~GilGLg~~~~Sl~s 135 (164)
T PF14543_consen 63 CCSNNSCPYSQSYGDG-SSSSGFLASDTLTFGSSSGGS---NSVPDFIFGCATSNSGLFY---GADGILGLGRGPLSLPS 135 (164)
T ss_dssp TCESSEEEEEEEETTT-EEEEEEEEEEEEEEEEESSSS---EEEEEEEEEEE-GGGTSST---TEEEEEE-SSSTTSHHH
T ss_pred CCCcCcccceeecCCC-ccccCceEEEEEEecCCCCCC---ceeeeEEEEeeeccccCCc---CCCcccccCCCcccHHH
Confidence 5556789999999994 899999999999999864332 3457999999999998775 67999999999999999
Q ss_pred HHHhcCCCCCceEEeecC---CCCccEEeCC
Q 009271 266 LLAKAGLIQNSFSICFDE---NDSGSVFFGD 293 (538)
Q Consensus 266 qL~~~g~i~~~FS~cl~~---~~~G~l~fG~ 293 (538)
||+++ ..++|||||.+ +..|.|+||+
T Consensus 136 Ql~~~--~~~~FSyCL~~~~~~~~g~l~fG~ 164 (164)
T PF14543_consen 136 QLASS--SGNKFSYCLPSSSPSSSGFLSFGD 164 (164)
T ss_dssp HHHHH----SEEEEEB-S-SSSSEEEEEECS
T ss_pred HHHHh--cCCeEEEECCCCCCCCCEEEEeCc
Confidence 99988 66999999988 4679999996
No 25
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A.
Probab=99.93 E-value=2e-25 Score=206.87 Aligned_cols=142 Identities=24% Similarity=0.483 Sum_probs=115.6
Q ss_pred eEEEeEeEEEECCeEeecC---------CceEEEcCCCccccccHHHHHHHHHHHHHhhccccc---ccccccccccccc
Q 009271 313 AYFVGVESYCIGNSCLTQS---------GFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRI---SLQGNSWKYCYNA 380 (538)
Q Consensus 313 ~y~V~l~~i~Vgg~~l~~~---------~~~aiiDSGTs~t~LP~~~y~~l~~~~~~~~~~~~~---~~~~~~~~~Cy~~ 380 (538)
+|+|+|++|+||++++... ..++||||||++|+||+++|++|+++|.+++..... ......++.||+.
T Consensus 1 ~Y~v~l~~Isvg~~~l~~~~~~~~~~~~~g~~iiDSGT~~T~L~~~~y~~l~~al~~~~~~~~~~~~~~~~~~~~~Cy~~ 80 (161)
T PF14541_consen 1 FYYVNLTGISVGGKRLPIPPSVFQLSDGSGGTIIDSGTTYTYLPPPVYDALVQALDAQMGAPGVSREAPPFSGFDLCYNL 80 (161)
T ss_dssp SEEEEEEEEEETTEEE---TTCSCETTSTCSEEE-SSSSSEEEEHHHHHHHHHHHHHHHHTCT--CEE---TT-S-EEEG
T ss_pred CccEEEEEEEECCEEecCChHHhhccCCCCCEEEECCCCccCCcHHHHHHHHHHHHHHhhhcccccccccCCCCCceeec
Confidence 5999999999999998732 246999999999999999999999999999987642 2233678899999
Q ss_pred cc----cccccCccEEEEEcCCeeeeeecceeEEeecCCcceEEEEEEec---CCCceeEcceeeeeeEEEEeCCCCEEE
Q 009271 381 SS----EEMLKVPDMRLIFSKNQSFVVRNHIFSFPENEGFTVFCLTVMST---DGDYGIIGQNFMMGHRIVFDRENLKLA 453 (538)
Q Consensus 381 ~~----~~~~~~P~it~~f~gg~~~~v~~~~y~~~~~~~~~~~Cl~i~~~---~~~~~IlG~~fl~~~yvVFD~e~~rIG 453 (538)
+. .....+|+|+|+|+||+.+++++++|++.... +.+||+|.++ ..+..|||..+|++++++||++++|||
T Consensus 81 ~~~~~~~~~~~~P~i~l~F~~ga~l~l~~~~y~~~~~~--~~~Cla~~~~~~~~~~~~viG~~~~~~~~v~fDl~~~~ig 158 (161)
T PF14541_consen 81 SSFGVNRDWAKFPTITLHFEGGADLTLPPENYFVQVSP--GVFCLAFVPSDADDDGVSVIGNFQQQNYHVVFDLENGRIG 158 (161)
T ss_dssp GCS-EETTEESS--EEEEETTSEEEEE-HHHHEEEECT--TEEEESEEEETSTTSSSEEE-HHHCCTEEEEEETTTTEEE
T ss_pred cccccccccccCCeEEEEEeCCcceeeeccceeeeccC--CCEEEEEEccCCCCCCcEEECHHHhcCcEEEEECCCCEEE
Confidence 87 35568999999999999999999999998874 6999999998 456899999999999999999999999
Q ss_pred Eee
Q 009271 454 WSH 456 (538)
Q Consensus 454 fa~ 456 (538)
|+|
T Consensus 159 F~~ 161 (161)
T PF14541_consen 159 FAP 161 (161)
T ss_dssp EEE
T ss_pred EeC
Confidence 986
No 26
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=99.86 E-value=1.4e-21 Score=168.76 Aligned_cols=107 Identities=38% Similarity=0.595 Sum_probs=89.5
Q ss_pred EEEEecCCCeEEEEEEEcCCCceeEecC-CCCCCCCccccccccCCCCCCC-CCCCCCCCccccCCCCCCCCCCCCCCCC
Q 009271 112 TWIDIGTPNVSFLVALDAGSNLLWVPCQ-CIQCAPLSASYYTSLDRNLSEY-DPSSSSSSKNVSCSHPLCKSRSSCKSLK 189 (538)
Q Consensus 112 ~~v~iGtP~q~~~v~lDTGS~~~Wv~c~-C~~C~~~~~~~~~~~~~~~~~f-~ps~SsT~~~~~C~~~~C~~~~~C~~~~ 189 (538)
++|.||||||++.|+|||||+++||+|. |..|.... .+.| +|++|+|++..
T Consensus 1 ~~i~vGtP~q~~~~~~DTGSs~~Wv~~~~c~~~~~~~----------~~~~~~~~~sst~~~~----------------- 53 (109)
T cd05470 1 IEIGIGTPPQTFNVLLDTGSSNLWVPSVDCQSLAIYS----------HSSYDDPSASSTYSDN----------------- 53 (109)
T ss_pred CEEEeCCCCceEEEEEeCCCCCEEEeCCCCCCccccc----------ccccCCcCCCCCCCCC-----------------
Confidence 3689999999999999999999999998 87775432 2345 99999998854
Q ss_pred CCCceeEecCCCCceEEEEEEEEEEEeccCCCCCCCccccccEEEEEEEeecCCCCCCCCCceEEee
Q 009271 190 DPCPYIADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGL 256 (538)
Q Consensus 190 ~~c~y~~~Y~dg~ss~~G~l~~D~v~l~~~~~~~~~~~~~~~~~fGc~~~~~g~~~~~~~~dGIlGL 256 (538)
.|.|.+.|++| ++.|.+++|+|+|++. ...++.|||++...+.+......+|||||
T Consensus 54 -~~~~~~~Y~~g--~~~g~~~~D~v~ig~~--------~~~~~~fg~~~~~~~~~~~~~~~~GilGL 109 (109)
T cd05470 54 -GCTFSITYGTG--SLSGGLSTDTVSIGDI--------EVVGQAFGCATDEPGATFLPALFDGILGL 109 (109)
T ss_pred -CcEEEEEeCCC--eEEEEEEEEEEEECCE--------EECCEEEEEEEecCCccccccccccccCC
Confidence 48999999986 4789999999999874 35789999999998875544477999998
No 27
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=97.20 E-value=0.0015 Score=54.04 Aligned_cols=29 Identities=14% Similarity=0.122 Sum_probs=26.0
Q ss_pred EEEEEEEecCCCeEEEEEEEcCCCceeEecC
Q 009271 109 LHYTWIDIGTPNVSFLVALDAGSNLLWVPCQ 139 (538)
Q Consensus 109 ~yy~~v~iGtP~q~~~v~lDTGS~~~Wv~c~ 139 (538)
.||+++.|+ .+++.+++|||++.+|+...
T Consensus 2 ~~~v~v~i~--~~~~~~llDTGa~~s~i~~~ 30 (96)
T cd05483 2 HFVVPVTIN--GQPVRFLLDTGASTTVISEE 30 (96)
T ss_pred cEEEEEEEC--CEEEEEEEECCCCcEEcCHH
Confidence 478999999 69999999999999999764
No 28
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=94.39 E-value=0.33 Score=42.67 Aligned_cols=103 Identities=18% Similarity=0.179 Sum_probs=55.8
Q ss_pred EEEECCeEeecCCceEEEcCCCccccccHHHHHHHHHHHHHhhccc-ccccccccccccccccccccccCccEEEEEcCC
Q 009271 320 SYCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSK-RISLQGNSWKYCYNASSEEMLKVPDMRLIFSKN 398 (538)
Q Consensus 320 ~i~Vgg~~l~~~~~~aiiDSGTs~t~LP~~~y~~l~~~~~~~~~~~-~~~~~~~~~~~Cy~~~~~~~~~~P~it~~f~gg 398 (538)
.+.|+|..+. ++||||.+.+.++.+..+++--... .... .....+..-..+ ........+++ |+
T Consensus 20 ~~~Ing~~~~-----~LvDTGAs~s~Is~~~a~~lgl~~~--~~~~~~~~~~g~g~~~~-------~g~~~~~~l~i-~~ 84 (124)
T cd05479 20 NVEINGVPVK-----AFVDSGAQMTIMSKACAEKCGLMRL--IDKRFQGIAKGVGTQKI-------LGRIHLAQVKI-GN 84 (124)
T ss_pred EEEECCEEEE-----EEEeCCCceEEeCHHHHHHcCCccc--cCcceEEEEecCCCcEE-------EeEEEEEEEEE-CC
Confidence 4466777665 8999999999999988776531100 0000 000000000000 00112333444 33
Q ss_pred eeeeeecceeEEeecCCcceEEEEEEecCCCceeEcceeeeeeEEEEeCCCCEEE
Q 009271 399 QSFVVRNHIFSFPENEGFTVFCLTVMSTDGDYGIIGQNFMMGHRIVFDRENLKLA 453 (538)
Q Consensus 399 ~~~~v~~~~y~~~~~~~~~~~Cl~i~~~~~~~~IlG~~fl~~~yvVFD~e~~rIG 453 (538)
..+.+ . +.+.+..+...|||.+||+.+..+.|..+++|-
T Consensus 85 ~~~~~--~--------------~~Vl~~~~~d~ILG~d~L~~~~~~ID~~~~~i~ 123 (124)
T cd05479 85 LFLPC--S--------------FTVLEDDDVDFLIGLDMLKRHQCVIDLKENVLR 123 (124)
T ss_pred EEeee--E--------------EEEECCCCcCEEecHHHHHhCCeEEECCCCEEE
Confidence 32221 1 223333233589999999999999999999875
No 29
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=93.46 E-value=0.71 Score=40.43 Aligned_cols=35 Identities=20% Similarity=0.265 Sum_probs=27.3
Q ss_pred ceEEEeEeEEEECCeEeecCCceEEEcCCCccccccHHHHHHH
Q 009271 312 DAYFVGVESYCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEV 354 (538)
Q Consensus 312 ~~y~V~l~~i~Vgg~~l~~~~~~aiiDSGTs~t~LP~~~y~~l 354 (538)
.+|.+ .+.|+|+.+. ++||||.+.+.++.+..+++
T Consensus 10 g~~~v---~~~InG~~~~-----flVDTGAs~t~is~~~A~~L 44 (121)
T TIGR02281 10 GHFYA---TGRVNGRNVR-----FLVDTGATSVALNEEDAQRL 44 (121)
T ss_pred CeEEE---EEEECCEEEE-----EEEECCCCcEEcCHHHHHHc
Confidence 45644 4577888655 89999999999999977665
No 30
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=90.54 E-value=2.7 Score=36.88 Aligned_cols=30 Identities=17% Similarity=0.273 Sum_probs=25.9
Q ss_pred cEEEEEEEecCCCeEEEEEEEcCCCceeEecC
Q 009271 108 WLHYTWIDIGTPNVSFLVALDAGSNLLWVPCQ 139 (538)
Q Consensus 108 ~~yy~~v~iGtP~q~~~v~lDTGS~~~Wv~c~ 139 (538)
..+|+++.|+ ++++.+++|||++..++.-+
T Consensus 15 ~~~~v~~~In--g~~~~~LvDTGAs~s~Is~~ 44 (124)
T cd05479 15 PMLYINVEIN--GVPVKAFVDSGAQMTIMSKA 44 (124)
T ss_pred eEEEEEEEEC--CEEEEEEEeCCCceEEeCHH
Confidence 3578899998 68899999999999999765
No 31
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=89.86 E-value=2.1 Score=38.33 Aligned_cols=28 Identities=18% Similarity=0.349 Sum_probs=25.5
Q ss_pred ceeEcceeeeeeEEEEeCCCCEEEEeec
Q 009271 430 YGIIGQNFMMGHRIVFDRENLKLAWSHS 457 (538)
Q Consensus 430 ~~IlG~~fl~~~yvVFD~e~~rIGfa~~ 457 (538)
..|||...|+.|..+-|..+++|-|...
T Consensus 105 DvILGm~WL~~~~~~IDw~~k~v~f~~p 132 (135)
T PF08284_consen 105 DVILGMDWLKKHNPVIDWATKTVTFNSP 132 (135)
T ss_pred eeEeccchHHhCCCEEEccCCEEEEeCC
Confidence 5899999999999999999999999753
No 32
>PF13650 Asp_protease_2: Aspartyl protease
Probab=89.36 E-value=3.7 Score=32.94 Aligned_cols=25 Identities=8% Similarity=0.193 Sum_probs=20.0
Q ss_pred EEEecCCCeEEEEEEEcCCCceeEecC
Q 009271 113 WIDIGTPNVSFLVALDAGSNLLWVPCQ 139 (538)
Q Consensus 113 ~v~iGtP~q~~~v~lDTGS~~~Wv~c~ 139 (538)
++.|+ .+++.+++|||++.+.+.-+
T Consensus 2 ~v~vn--g~~~~~liDTGa~~~~i~~~ 26 (90)
T PF13650_consen 2 PVKVN--GKPVRFLIDTGASISVISRS 26 (90)
T ss_pred EEEEC--CEEEEEEEcCCCCcEEECHH
Confidence 45666 58999999999998888643
No 33
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=88.48 E-value=0.54 Score=38.70 Aligned_cols=28 Identities=14% Similarity=0.182 Sum_probs=24.5
Q ss_pred EEEEEEecCCCeEEEEEEEcCCCceeEecC
Q 009271 110 HYTWIDIGTPNVSFLVALDAGSNLLWVPCQ 139 (538)
Q Consensus 110 yy~~v~iGtP~q~~~v~lDTGS~~~Wv~c~ 139 (538)
||+++.|+ .+++.+.+||||+..++.-+
T Consensus 1 ~~~~~~In--g~~i~~lvDTGA~~svis~~ 28 (91)
T cd05484 1 KTVTLLVN--GKPLKFQLDTGSAITVISEK 28 (91)
T ss_pred CEEEEEEC--CEEEEEEEcCCcceEEeCHH
Confidence 57889998 68999999999999999753
No 34
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=88.15 E-value=1.8 Score=37.08 Aligned_cols=24 Identities=33% Similarity=0.512 Sum_probs=20.6
Q ss_pred CceeEcceeeeeeEEEEeCCCCEE
Q 009271 429 DYGIIGQNFMMGHRIVFDRENLKL 452 (538)
Q Consensus 429 ~~~IlG~~fl~~~yvVFD~e~~rI 452 (538)
+..+||..||+.+-++.|..++++
T Consensus 84 ~~~LLG~~~L~~l~l~id~~~~~~ 107 (107)
T TIGR03698 84 DEPLLGTELLEGLGIVIDYRNQGL 107 (107)
T ss_pred CccEecHHHHhhCCEEEehhhCcC
Confidence 368999999999999999887653
No 35
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=83.16 E-value=7.4 Score=35.76 Aligned_cols=21 Identities=29% Similarity=0.619 Sum_probs=17.4
Q ss_pred eEEEcCCCccccccHHHHHHH
Q 009271 334 QALVDSGASFTFLPTEIYAEV 354 (538)
Q Consensus 334 ~aiiDSGTs~t~LP~~~y~~l 354 (538)
.++||||....++-.++.+.|
T Consensus 47 ~vLfDSGSPTSfIr~di~~kL 67 (177)
T PF12384_consen 47 KVLFDSGSPTSFIRSDIVEKL 67 (177)
T ss_pred EEEEeCCCccceeehhhHHhh
Confidence 499999999988888776655
No 36
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=81.28 E-value=3.1 Score=36.40 Aligned_cols=34 Identities=9% Similarity=-0.013 Sum_probs=28.5
Q ss_pred cccccEEEEEEEecCCCeEEEEEEEcCCCceeEecC
Q 009271 104 NQFYWLHYTWIDIGTPNVSFLVALDAGSNLLWVPCQ 139 (538)
Q Consensus 104 ~~~~~~yy~~v~iGtP~q~~~v~lDTGS~~~Wv~c~ 139 (538)
...+..||+++.|. .+++.++||||++.+-++.+
T Consensus 6 ~~~~g~~~v~~~In--G~~~~flVDTGAs~t~is~~ 39 (121)
T TIGR02281 6 KDGDGHFYATGRVN--GRNVRFLVDTGATSVALNEE 39 (121)
T ss_pred EcCCCeEEEEEEEC--CEEEEEEEECCCCcEEcCHH
Confidence 45567899999997 57999999999999988753
No 37
>PF13650 Asp_protease_2: Aspartyl protease
Probab=81.23 E-value=2 Score=34.49 Aligned_cols=30 Identities=17% Similarity=0.337 Sum_probs=25.0
Q ss_pred EEEECCeEeecCCceEEEcCCCccccccHHHHHHH
Q 009271 320 SYCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEV 354 (538)
Q Consensus 320 ~i~Vgg~~l~~~~~~aiiDSGTs~t~LP~~~y~~l 354 (538)
.+.|+|+.+. ++||||.+.+.+.++.++++
T Consensus 2 ~v~vng~~~~-----~liDTGa~~~~i~~~~~~~l 31 (90)
T PF13650_consen 2 PVKVNGKPVR-----FLIDTGASISVISRSLAKKL 31 (90)
T ss_pred EEEECCEEEE-----EEEcCCCCcEEECHHHHHHc
Confidence 3577887665 89999999999999988776
No 38
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=77.63 E-value=3.9 Score=32.12 Aligned_cols=30 Identities=30% Similarity=0.540 Sum_probs=25.6
Q ss_pred EEEECCeEeecCCceEEEcCCCccccccHHHHHHH
Q 009271 320 SYCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEV 354 (538)
Q Consensus 320 ~i~Vgg~~l~~~~~~aiiDSGTs~t~LP~~~y~~l 354 (538)
.+.|+|..+. ++||||.+-.+++....+.+
T Consensus 12 ~~~I~g~~~~-----alvDtGat~~fis~~~a~rL 41 (72)
T PF13975_consen 12 PVSIGGVQVK-----ALVDTGATHNFISESLAKRL 41 (72)
T ss_pred EEEECCEEEE-----EEEeCCCcceecCHHHHHHh
Confidence 4577887776 89999999999999988876
No 39
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=76.97 E-value=5 Score=31.49 Aligned_cols=31 Identities=23% Similarity=0.289 Sum_probs=27.4
Q ss_pred ccEEEEEEEecCCCeEEEEEEEcCCCceeEecC
Q 009271 107 YWLHYTWIDIGTPNVSFLVALDAGSNLLWVPCQ 139 (538)
Q Consensus 107 ~~~yy~~v~iGtP~q~~~v~lDTGS~~~Wv~c~ 139 (538)
...+++.+.||. +.+..++|||++...|+.+
T Consensus 6 ~g~~~v~~~I~g--~~~~alvDtGat~~fis~~ 36 (72)
T PF13975_consen 6 PGLMYVPVSIGG--VQVKALVDTGATHNFISES 36 (72)
T ss_pred CCEEEEEEEECC--EEEEEEEeCCCcceecCHH
Confidence 467889999995 9999999999999999875
No 40
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=76.30 E-value=3.8 Score=33.58 Aligned_cols=30 Identities=13% Similarity=0.354 Sum_probs=26.4
Q ss_pred EEEECCeEeecCCceEEEcCCCccccccHHHHHHH
Q 009271 320 SYCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEV 354 (538)
Q Consensus 320 ~i~Vgg~~l~~~~~~aiiDSGTs~t~LP~~~y~~l 354 (538)
.+.|+|+.+. ++||||.+.+.++++.+.++
T Consensus 4 ~~~Ing~~i~-----~lvDTGA~~svis~~~~~~l 33 (91)
T cd05484 4 TLLVNGKPLK-----FQLDTGSAITVISEKTWRKL 33 (91)
T ss_pred EEEECCEEEE-----EEEcCCcceEEeCHHHHHHh
Confidence 4678888887 89999999999999988876
No 41
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=74.45 E-value=13 Score=32.79 Aligned_cols=30 Identities=23% Similarity=0.276 Sum_probs=24.2
Q ss_pred EEEECCeEeecCCceEEEcCCCccccccHHHHHHH
Q 009271 320 SYCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEV 354 (538)
Q Consensus 320 ~i~Vgg~~l~~~~~~aiiDSGTs~t~LP~~~y~~l 354 (538)
.+.++|+.+. |+||||...+.++....+++
T Consensus 28 ~~~ing~~vk-----A~VDtGAQ~tims~~~a~r~ 57 (124)
T PF09668_consen 28 NCKINGVPVK-----AFVDTGAQSTIMSKSCAERC 57 (124)
T ss_dssp EEEETTEEEE-----EEEETT-SS-EEEHHHHHHT
T ss_pred EEEECCEEEE-----EEEeCCCCccccCHHHHHHc
Confidence 5678998887 99999999999999988765
No 42
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=73.56 E-value=5.8 Score=32.16 Aligned_cols=31 Identities=26% Similarity=0.337 Sum_probs=24.8
Q ss_pred eEEEECCeEeecCCceEEEcCCCccccccHHHHHHH
Q 009271 319 ESYCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEV 354 (538)
Q Consensus 319 ~~i~Vgg~~l~~~~~~aiiDSGTs~t~LP~~~y~~l 354 (538)
..+.||++.+. ++||||.+.+.++.+..+.+
T Consensus 5 v~v~i~~~~~~-----~llDTGa~~s~i~~~~~~~l 35 (96)
T cd05483 5 VPVTINGQPVR-----FLLDTGASTTVISEELAERL 35 (96)
T ss_pred EEEEECCEEEE-----EEEECCCCcEEcCHHHHHHc
Confidence 35677777665 89999999999999876655
No 43
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=73.02 E-value=7 Score=32.37 Aligned_cols=26 Identities=15% Similarity=0.253 Sum_probs=21.6
Q ss_pred EEEEecCCCeEEEEEEEcCCCceeEecC
Q 009271 112 TWIDIGTPNVSFLVALDAGSNLLWVPCQ 139 (538)
Q Consensus 112 ~~v~iGtP~q~~~v~lDTGS~~~Wv~c~ 139 (538)
.+|.|. .+++.+++||||+.+-++..
T Consensus 8 i~v~i~--g~~i~~LlDTGA~vsiI~~~ 33 (100)
T PF00077_consen 8 ITVKIN--GKKIKALLDTGADVSIISEK 33 (100)
T ss_dssp EEEEET--TEEEEEEEETTBSSEEESSG
T ss_pred EEEeEC--CEEEEEEEecCCCcceeccc
Confidence 456777 57999999999999999864
No 44
>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]
Probab=66.59 E-value=31 Score=35.71 Aligned_cols=110 Identities=16% Similarity=0.214 Sum_probs=64.4
Q ss_pred eEEEECCeEeecCCceEEEcCCCccccccHHHHHHHHHHHHHhhcccccccccccccccccccccccccCccEEEEEcCC
Q 009271 319 ESYCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMRLIFSKN 398 (538)
Q Consensus 319 ~~i~Vgg~~l~~~~~~aiiDSGTs~t~LP~~~y~~l~~~~~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~it~~f~gg 398 (538)
-++.++|+.++ |.||||+-++.+...-.++.- +.+.+.. +..... ..+| +..+.|
T Consensus 238 iN~~ing~~VK-----AfVDsGaq~timS~~Caer~g--L~rlid~-r~~g~a--------------~gvg--~~ki~g- 292 (380)
T KOG0012|consen 238 INCEINGVPVK-----AFVDSGAQTTIMSAACAERCG--LNRLIDK-RFQGEA--------------RGVG--TEKILG- 292 (380)
T ss_pred EEEEECCEEEE-----EEEcccchhhhhhHHHHHHhC--hHHHhhh-hhhccc--------------cCCC--cccccc-
Confidence 35678888887 899999988877655444321 1111111 111110 1223 112212
Q ss_pred eeeeeecceeEEeecCCcceEE-EEEEecCCCceeEcceeeeeeEEEEeCCCCEEEEeecCC
Q 009271 399 QSFVVRNHIFSFPENEGFTVFC-LTVMSTDGDYGIIGQNFMMGHRIVFDRENLKLAWSHSKC 459 (538)
Q Consensus 399 ~~~~v~~~~y~~~~~~~~~~~C-l~i~~~~~~~~IlG~~fl~~~yvVFD~e~~rIGfa~~~C 459 (538)
. |. ...+.-++ ....| +.++...+-...||-..|+.|--.-|++++++-++...-
T Consensus 293 ~---Ih--~~~lki~~-~~l~c~ftV~d~~~~d~llGLd~Lrr~~ccIdL~~~~L~ig~~~t 348 (380)
T KOG0012|consen 293 R---IH--QAQLKIED-LYLPCSFTVLDRRDMDLLLGLDMLRRHQCCIDLKTNVLRIGNTET 348 (380)
T ss_pred e---eE--EEEEEecc-EeeccceEEecCCCcchhhhHHHHHhccceeecccCeEEecCCCc
Confidence 1 11 11111111 14568 778777655689999999999999999999999886543
No 45
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=61.92 E-value=9.6 Score=30.93 Aligned_cols=29 Identities=21% Similarity=0.345 Sum_probs=24.5
Q ss_pred EEECCeEeecCCceEEEcCCCccccccHHHHHHH
Q 009271 321 YCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEV 354 (538)
Q Consensus 321 i~Vgg~~l~~~~~~aiiDSGTs~t~LP~~~y~~l 354 (538)
+.|+|+.+. .++|||.+.+.++++..+.+
T Consensus 3 v~InG~~~~-----fLvDTGA~~tii~~~~a~~~ 31 (86)
T cd06095 3 ITVEGVPIV-----FLVDTGATHSVLKSDLGPKQ 31 (86)
T ss_pred EEECCEEEE-----EEEECCCCeEEECHHHhhhc
Confidence 567787766 89999999999999888765
No 46
>cd05480 NRIP_C NRIP_C; putative nuclear receptor interacting protein. Proteins in this family have been described as probable nuclear receptor interacting proteins. The C-terminal domain of this family is homologous to the retroviral aspartyl protease domain. The domain is structurally related to one lobe of the pepsin molecule. The conserved active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=58.73 E-value=90 Score=26.42 Aligned_cols=33 Identities=21% Similarity=0.283 Sum_probs=25.2
Q ss_pred ceEE-EEEEecCCCceeEcceeeeeeEEEEeCCC
Q 009271 417 TVFC-LTVMSTDGDYGIIGQNFMMGHRIVFDREN 449 (538)
Q Consensus 417 ~~~C-l~i~~~~~~~~IlG~~fl~~~yvVFD~e~ 449 (538)
-.-| +.++...+-..+||-..|+.|--.-|+++
T Consensus 70 ~~~CSftVld~~~~d~llGLdmLkrhqc~IdL~k 103 (103)
T cd05480 70 TVECSAQVVDDNEKNFSLGLQTLKSLKCVINLEK 103 (103)
T ss_pred EeeEEEEEEcCCCcceEeeHHHHhhcceeeeccC
Confidence 3557 66777654578999999999988888764
No 47
>cd05482 HIV_retropepsin_like Retropepsins, pepsin-like aspartate proteases. This is a subfamily of retropepsins. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This gro
Probab=58.44 E-value=13 Score=30.45 Aligned_cols=23 Identities=22% Similarity=0.265 Sum_probs=19.8
Q ss_pred EEecCCCeEEEEEEEcCCCceeEec
Q 009271 114 IDIGTPNVSFLVALDAGSNLLWVPC 138 (538)
Q Consensus 114 v~iGtP~q~~~v~lDTGS~~~Wv~c 138 (538)
+.|+ .|.+.+++|||.|++-+.-
T Consensus 3 ~~i~--g~~~~~llDTGAd~Tvi~~ 25 (87)
T cd05482 3 LYIN--GKLFEGLLDTGADVSIIAE 25 (87)
T ss_pred EEEC--CEEEEEEEccCCCCeEEcc
Confidence 5666 6999999999999999964
No 48
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=57.73 E-value=8.8 Score=31.77 Aligned_cols=28 Identities=21% Similarity=0.370 Sum_probs=22.3
Q ss_pred eEEEECCeEeecCCceEEEcCCCccccccHHHH
Q 009271 319 ESYCIGNSCLTQSGFQALVDSGASFTFLPTEIY 351 (538)
Q Consensus 319 ~~i~Vgg~~l~~~~~~aiiDSGTs~t~LP~~~y 351 (538)
..|.++|+.+. ++||||...+.++++.+
T Consensus 8 i~v~i~g~~i~-----~LlDTGA~vsiI~~~~~ 35 (100)
T PF00077_consen 8 ITVKINGKKIK-----ALLDTGADVSIISEKDW 35 (100)
T ss_dssp EEEEETTEEEE-----EEEETTBSSEEESSGGS
T ss_pred EEEeECCEEEE-----EEEecCCCcceeccccc
Confidence 35667777766 99999999999997643
No 49
>cd05481 retropepsin_like_LTR_1 Retropepsins_like_LTR; pepsin-like aspartate protease from retrotransposons with long terminal repeats. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identifi
Probab=46.81 E-value=21 Score=29.56 Aligned_cols=30 Identities=20% Similarity=0.338 Sum_probs=23.7
Q ss_pred EEECC-eEeecCCceEEEcCCCccccccHHHHHHHH
Q 009271 321 YCIGN-SCLTQSGFQALVDSGASFTFLPTEIYAEVV 355 (538)
Q Consensus 321 i~Vgg-~~l~~~~~~aiiDSGTs~t~LP~~~y~~l~ 355 (538)
+.++| +.+ .+.+|||.+...||...|+.+.
T Consensus 3 ~~i~g~~~v-----~~~vDtGA~vnllp~~~~~~l~ 33 (93)
T cd05481 3 MKINGKQSV-----KFQLDTGATCNVLPLRWLKSLT 33 (93)
T ss_pred eEeCCceeE-----EEEEecCCEEEeccHHHHhhhc
Confidence 55666 444 4899999999999999888764
No 50
>cd06094 RP_Saci_like RP_Saci_like, retropepsin family. Retropepsin on retrotransposons with long terminal repeats (LTR) including Saci-1, -2 and -3 of Schistosoma mansoni. Retropepsins are related to fungal and mammalian pepsins. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified
Probab=46.58 E-value=64 Score=26.63 Aligned_cols=21 Identities=43% Similarity=0.700 Sum_probs=16.6
Q ss_pred CCceEEEcCCCccccccHHHH
Q 009271 331 SGFQALVDSGASFTFLPTEIY 351 (538)
Q Consensus 331 ~~~~aiiDSGTs~t~LP~~~y 351 (538)
++...+||||.....+|.+..
T Consensus 8 s~~~fLVDTGA~vSviP~~~~ 28 (89)
T cd06094 8 SGLRFLVDTGAAVSVLPASST 28 (89)
T ss_pred CCcEEEEeCCCceEeeccccc
Confidence 445689999999999996643
No 51
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=45.77 E-value=27 Score=28.27 Aligned_cols=24 Identities=17% Similarity=0.322 Sum_probs=19.4
Q ss_pred EEecCCCeEEEEEEEcCCCceeEecC
Q 009271 114 IDIGTPNVSFLVALDAGSNLLWVPCQ 139 (538)
Q Consensus 114 v~iGtP~q~~~v~lDTGS~~~Wv~c~ 139 (538)
+.|. ++++.+++|||++.+-+...
T Consensus 3 v~In--G~~~~fLvDTGA~~tii~~~ 26 (86)
T cd06095 3 ITVE--GVPIVFLVDTGATHSVLKSD 26 (86)
T ss_pred EEEC--CEEEEEEEECCCCeEEECHH
Confidence 4454 58999999999999999753
No 52
>PF02160 Peptidase_A3: Cauliflower mosaic virus peptidase (A3); InterPro: IPR000588 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of sequences contain an aspartic peptidase signature that belongs to MEROPS peptidase family A3, subfamily A3A (cauliflower mosaic virus-type endopeptidase, clan AA). Cauliflower mosaic virus belongs to the Retro-transcribing viruses, which have a double-stranded DNA genome. The genome includes an open reading frame (ORF V) that shows similarities to the pol gene of retroviruses. This ORF codes for a polyprotein that includes a reverse transcriptase, which, on the basis of a DTG triplet near the N terminus, was suggested to include an aspartic protease. The presence of an aspartic protease has been confirmed by mutational studies, implicating Asp-45 in catalysis. The protease releases itself from the polyprotein and is involved in reactions required to process the ORF IV polyprotein, which includes the viral coat protein []. The viral aspartic peptidase signature has also been found associated with a polyprotein encoded by integrated pararetrovirus-like sequences in the genome of Nicotiana tabacum (Common tobacco) []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis
Probab=40.70 E-value=47 Score=31.76 Aligned_cols=52 Identities=17% Similarity=0.287 Sum_probs=32.4
Q ss_pred cCccEEEEEcCCeeeeeecceeEEeecCCcceEEEEEEecCCCceeEcceeeeeeEEEEeCCCCEEEEee
Q 009271 387 KVPDMRLIFSKNQSFVVRNHIFSFPENEGFTVFCLTVMSTDGDYGIIGQNFMMGHRIVFDRENLKLAWSH 456 (538)
Q Consensus 387 ~~P~it~~f~gg~~~~v~~~~y~~~~~~~~~~~Cl~i~~~~~~~~IlG~~fl~~~yvVFD~e~~rIGfa~ 456 (538)
..+.+.+.+ ++..|.+| ..|... .+-..|||.||++-|+=..+.+ .+|-|..
T Consensus 66 ~~~~~~i~I-~~~~F~IP-~iYq~~---------------~g~d~IlG~NF~r~y~Pfiq~~-~~I~f~~ 117 (201)
T PF02160_consen 66 KAKNGKIQI-ADKIFRIP-TIYQQE---------------SGIDIILGNNFLRLYEPFIQTE-DRIQFHK 117 (201)
T ss_pred EecCceEEE-ccEEEecc-EEEEec---------------CCCCEEecchHHHhcCCcEEEc-cEEEEEe
Confidence 346677777 44666664 222111 2245899999999887655555 4677765
No 53
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=36.89 E-value=1.6e+02 Score=28.32 Aligned_cols=44 Identities=9% Similarity=-0.062 Sum_probs=35.0
Q ss_pred cCCCCceeeeccccccEEEEEEEecCCCeEEEEEEEcCCCceeEec
Q 009271 93 PSEGSQTHFFGNQFYWLHYTWIDIGTPNVSFLVALDAGSNLLWVPC 138 (538)
Q Consensus 93 ~~~g~~~~~~~~~~~~~yy~~v~iGtP~q~~~v~lDTGS~~~Wv~c 138 (538)
..+|...+.+....+.-|+++..|- +|++..++|||-+.+-++-
T Consensus 89 ~~~g~~~v~Lak~~~GHF~a~~~VN--Gk~v~fLVDTGATsVal~~ 132 (215)
T COG3577 89 VGDGYQEVSLAKSRDGHFEANGRVN--GKKVDFLVDTGATSVALNE 132 (215)
T ss_pred CCCCceEEEEEecCCCcEEEEEEEC--CEEEEEEEecCcceeecCH
Confidence 3445456777777788888888887 7999999999999888864
No 54
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=34.48 E-value=32 Score=30.26 Aligned_cols=34 Identities=21% Similarity=0.396 Sum_probs=25.6
Q ss_pred EEEEEEEecCCCeEEEEEEEcCCCceeEecCC-CCCC
Q 009271 109 LHYTWIDIGTPNVSFLVALDAGSNLLWVPCQC-IQCA 144 (538)
Q Consensus 109 ~yy~~v~iGtP~q~~~v~lDTGS~~~Wv~c~C-~~C~ 144 (538)
..|.++.|+ .+++...+|||...+-+.-.| ..|.
T Consensus 24 mLyI~~~in--g~~vkA~VDtGAQ~tims~~~a~r~g 58 (124)
T PF09668_consen 24 MLYINCKIN--GVPVKAFVDTGAQSTIMSKSCAERCG 58 (124)
T ss_dssp --EEEEEET--TEEEEEEEETT-SS-EEEHHHHHHTT
T ss_pred eEEEEEEEC--CEEEEEEEeCCCCccccCHHHHHHcC
Confidence 578899999 699999999999999998773 5674
No 55
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=30.83 E-value=67 Score=30.76 Aligned_cols=35 Identities=20% Similarity=0.166 Sum_probs=28.3
Q ss_pred ceEEEeEeEEEECCeEeecCCceEEEcCCCccccccHHHHHHH
Q 009271 312 DAYFVGVESYCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEV 354 (538)
Q Consensus 312 ~~y~V~l~~i~Vgg~~l~~~~~~aiiDSGTs~t~LP~~~y~~l 354 (538)
.+|.+ ...|||+.+. .++|||.|.+.|+++.-+++
T Consensus 104 GHF~a---~~~VNGk~v~-----fLVDTGATsVal~~~dA~Rl 138 (215)
T COG3577 104 GHFEA---NGRVNGKKVD-----FLVDTGATSVALNEEDARRL 138 (215)
T ss_pred CcEEE---EEEECCEEEE-----EEEecCcceeecCHHHHHHh
Confidence 56644 4689999888 89999999999998866554
No 56
>COG5550 Predicted aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=30.32 E-value=32 Score=30.13 Aligned_cols=20 Identities=25% Similarity=0.672 Sum_probs=18.1
Q ss_pred EEEcCCCc-cccccHHHHHHH
Q 009271 335 ALVDSGAS-FTFLPTEIYAEV 354 (538)
Q Consensus 335 aiiDSGTs-~t~LP~~~y~~l 354 (538)
.+||||-+ ++.+|.++++++
T Consensus 29 ~LiDTGFtg~lvlp~~vaek~ 49 (125)
T COG5550 29 ELIDTGFTGYLVLPPQVAEKL 49 (125)
T ss_pred eEEecCCceeEEeCHHHHHhc
Confidence 58999998 999999999876
No 57
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=25.63 E-value=88 Score=28.94 Aligned_cols=27 Identities=15% Similarity=0.310 Sum_probs=22.3
Q ss_pred EEEEecCCCeEEEEEEEcCCCceeEec
Q 009271 112 TWIDIGTPNVSFLVALDAGSNLLWVPC 138 (538)
Q Consensus 112 ~~v~iGtP~q~~~v~lDTGS~~~Wv~c 138 (538)
+.+.+++-..++.++|||||..-.+..
T Consensus 35 ~~v~l~~~~t~i~vLfDSGSPTSfIr~ 61 (177)
T PF12384_consen 35 AIVQLNCKGTPIKVLFDSGSPTSFIRS 61 (177)
T ss_pred EEEEEeecCcEEEEEEeCCCccceeeh
Confidence 346777778999999999999888865
No 58
>cd00303 retropepsin_like Retropepsins; pepsin-like aspartate proteases. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements, as well as eukaryotic dna-damage-inducible proteins (DDIs), and bacterial aspartate peptidases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples
Probab=23.00 E-value=1.4e+02 Score=22.17 Aligned_cols=21 Identities=43% Similarity=0.691 Sum_probs=17.5
Q ss_pred eEEEcCCCccccccHHHHHHH
Q 009271 334 QALVDSGASFTFLPTEIYAEV 354 (538)
Q Consensus 334 ~aiiDSGTs~t~LP~~~y~~l 354 (538)
.+++|+|.+...+..+.+...
T Consensus 11 ~~liDtgs~~~~~~~~~~~~~ 31 (92)
T cd00303 11 RALVDSGASVNFISESLAKKL 31 (92)
T ss_pred EEEEcCCCcccccCHHHHHHc
Confidence 489999999999998877643
No 59
>PF13956 Ibs_toxin: Toxin Ibs, type I toxin-antitoxin system
Probab=23.00 E-value=47 Score=18.80 Aligned_cols=15 Identities=33% Similarity=0.383 Sum_probs=9.9
Q ss_pred CchhHHHHHHHHHHH
Q 009271 1 MVNLVAICMLFGCIL 15 (538)
Q Consensus 1 ~~~~~~~~~~~~~~~ 15 (538)
|.+++.||+.++.++
T Consensus 1 MMk~vIIlvvLLliS 15 (19)
T PF13956_consen 1 MMKLVIILVVLLLIS 15 (19)
T ss_pred CceehHHHHHHHhcc
Confidence 566777777776554
Done!