Query         009271
Match_columns 538
No_of_seqs    321 out of 1400
Neff          7.8 
Searched_HMMs 29240
Date          Mon Mar 25 22:43:34 2013
Command       hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009271.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009271hhsearch_pdb -cpu 12 -v 0 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 3vla_A EDGP; extracellular, in 100.0 2.2E-59 7.7E-64  495.7  25.6  326  104-457    16-398 (413)
  2 1mpp_A Pepsin; hydrolase(acid  100.0 2.4E-55 8.3E-60  457.7  30.5  313  100-462    10-359 (361)
  3 3aup_A SBG7S, BG, basic 7S glo 100.0 1.3E-55 4.5E-60  466.3  28.1  335  100-465    12-400 (403)
  4 1tzs_A Cathepsin E; hydrolase, 100.0 3.3E-55 1.1E-59  455.0  28.0  307   99-461    14-345 (351)
  5 2x0b_A Renin; hydrolase-hormon 100.0 3.8E-55 1.3E-59  458.7  25.5  303   99-458    52-383 (383)
  6 1dpj_A Proteinase A; proteinas 100.0 2.2E-54 7.4E-59  445.0  28.1  299  100-458     5-329 (329)
  7 3psg_A Pepsinogen; hydrolase(a 100.0 1.3E-54 4.5E-59  453.3  26.6  302  100-458    48-370 (370)
  8 1am5_A Pepsin, acid proteinase 100.0 3.6E-54 1.2E-58  442.4  28.6  299  100-458     4-324 (324)
  9 1j71_A Candidapepsin, aspartic 100.0 2.7E-54 9.3E-59  445.1  27.2  306  100-461     5-327 (334)
 10 2qzx_A Candidapepsin-5; aspart 100.0 3.4E-54 1.2E-58  445.8  27.8  308  100-461     5-334 (342)
 11 2apr_A Rhizopuspepsin; hydrola 100.0 6.8E-54 2.3E-58  440.6  29.6  297  104-458    11-324 (325)
 12 3cms_A Chymosin B; hydrolase,  100.0 2.2E-54 7.7E-59  443.8  24.5  300  100-458     6-323 (323)
 13 1t6e_X Xylanase inhibitor; two 100.0 1.3E-53 4.5E-58  447.8  28.5  317  104-459    10-374 (381)
 14 2ewy_A Beta-secretase 2; BACE2 100.0 2.4E-53 8.1E-58  446.1  30.0  324  102-470     7-367 (383)
 15 4aa9_A Chymosin; hydrolase, as 100.0 5.2E-54 1.8E-58  440.3  24.3  300  100-458     3-320 (320)
 16 2bju_A Plasmepsin II; aspartic 100.0 4.3E-54 1.5E-58  458.4  24.5  302   98-458   128-450 (453)
 17 3k1w_A Renin; protease, altern 100.0 5.5E-54 1.9E-58  443.9  24.2  307   99-458     9-340 (341)
 18 3c9x_A Trichoderma reesei aspa 100.0 1.4E-53 4.7E-58  439.0  27.0  303  104-457    11-329 (329)
 19 1htr_B Gastricsin; aspartyl pr 100.0 1.1E-53 3.9E-58  439.6  25.6  298  101-458     6-329 (329)
 20 2qp8_A Beta-secretase 1; BACE1 100.0 4.4E-53 1.5E-57  445.9  30.2  322  104-470    17-379 (395)
 21 1oew_A Endothiapepsin; hydrola 100.0 3.7E-53 1.3E-57  435.8  27.1  301  105-457    12-329 (329)
 22 3fv3_A SAPP1P-secreted asparti 100.0 6.3E-53 2.2E-57  435.7  28.4  292  107-461    11-332 (339)
 23 3vf3_A Beta-secretase 1; struc 100.0 3.5E-52 1.2E-56  440.0  31.5  321  105-470    25-386 (402)
 24 3lpj_A Beta-secretase 1; alzhe 100.0 5.6E-52 1.9E-56  445.2  32.8  321  104-469    70-431 (455)
 25 1miq_A Plasmepsin; aspartic pr 100.0 6.2E-53 2.1E-57  441.4  24.6  299   99-458    53-374 (375)
 26 3pvk_A Candidapepsin-2; hydrol 100.0 1.4E-52 4.9E-57  433.5  27.0  304  106-461    10-334 (342)
 27 1qdm_A Prophytepsin; aspartic  100.0 5.5E-53 1.9E-57  454.1  24.0  315   98-457    42-477 (478)
 28 3qvc_A Histo-aspartic protease 100.0 7.4E-52 2.5E-56  441.6  25.5  300   98-458   127-449 (451)
 29 1yg9_A Aspartic protease BLA G 100.0 9.3E-52 3.2E-56  425.5  24.5  299  101-458    10-329 (330)
 30 1wkr_A Polyporopepsin; hydrola 100.0 4.8E-51 1.6E-55  421.9  25.6  297  100-462     5-337 (340)
 31 1ibq_A Aspergillopepsin; aspar 100.0 9.3E-51 3.2E-55  417.2  27.4  298  105-457    11-324 (325)
 32 1izd_A Aspartic proteinase; su 100.0 4.5E-50 1.6E-54  411.7  27.5  295  105-457    12-322 (323)
 33 1bxo_A Protein (penicillopepsi 100.0 2.6E-50 8.8E-55  413.6  23.8  295  105-457    12-322 (323)
 34 1b5f_A Protein (cardosin A); h 100.0 1.9E-41 6.3E-46  333.0  21.3  219   97-359     2-237 (239)
 35 1lya_B Cathepsin D; lysosomal  100.0 8.7E-36   3E-40  292.8  20.5  216  228-458     4-241 (241)
 36 1lya_A Cathepsin D; lysosomal   99.9 5.5E-22 1.9E-26  166.4   9.5   88   99-218     4-96  (97)
 37 1b5f_B Protein (cardosin A); h  99.6 1.1E-15 3.9E-20  125.3   6.8   79  379-458     4-87  (87)
 38 3s8i_A Protein DDI1 homolog 1;  92.8    0.22 7.4E-06   44.1   6.9  112  313-458    24-136 (148)
 39 2i1a_A DNA damage-inducible pr  92.6    0.48 1.7E-05   41.4   8.9  103  320-455    30-134 (148)
 40 1fmb_A EIAV protease; hydrolas  73.2     3.4 0.00012   34.0   4.2   25  111-137    10-34  (104)
 41 2hs1_A HIV-1 protease; ultra-h  72.3     3.8 0.00013   33.4   4.2   25  111-137    10-34  (99)
 42 3ec0_A Protease; HIV-2, inhibi  65.3       6 0.00021   32.2   4.0   25  111-137    10-34  (99)
 43 3liy_A Protease; hydrolase, hy  64.6     6.2 0.00021   32.9   3.9   26  113-138    14-42  (116)
 44 2hah_A Protease, retropepsin;   59.9     8.1 0.00028   32.4   3.9   23  114-138    18-40  (116)
 45 2i1a_A DNA damage-inducible pr  56.8     8.4 0.00029   33.2   3.8   30  108-139    25-54  (148)
 46 3s8i_A Protein DDI1 homolog 1;  48.7      14 0.00048   32.2   3.8   29  109-139    24-52  (148)
 47 3sqf_A Protease; folded monome  47.7      19 0.00064   30.0   4.2   25  112-138    12-36  (114)
 48 3slz_A GAG-Pro-POL polyprotein  35.7      33  0.0011   29.3   4.0   25  111-137    24-48  (132)
 49 1lya_A Cathepsin D; lysosomal   31.5      38  0.0013   27.0   3.5   32  312-349    13-44  (97)
 50 2rsp_A RSV protease; hydrolase  30.5      40  0.0014   28.5   3.6   19  120-138    29-47  (124)
 51 3ka2_A [L-Ala51;Gly51']HIV-1 p  28.6      47  0.0016   30.5   4.0   24  112-137    11-34  (203)
 52 1uff_A Intersectin 2; beta bar  20.7 1.6E+02  0.0055   22.7   5.4   15  450-464    49-63  (93)
 53 1ibq_A Aspergillopepsin; aspar  20.4 1.1E+02  0.0038   29.7   5.3   30  312-349    14-43  (325)

No 1  
>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A
Probab=100.00  E-value=2.2e-59  Score=495.70  Aligned_cols=326  Identities=21%  Similarity=0.347  Sum_probs=263.0

Q ss_pred             cccccEEEEEEEecCCCeEEEEEEEcCCCceeEecCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCCCCCCCCC
Q 009271          104 NQFYWLHYTWIDIGTPNVSFLVALDAGSNLLWVPCQCIQCAPLSASYYTSLDRNLSEYDPSSSSSSKNVSCSHPLCKSRS  183 (538)
Q Consensus       104 ~~~~~~yy~~v~iGtP~q~~~v~lDTGS~~~Wv~c~C~~C~~~~~~~~~~~~~~~~~f~ps~SsT~~~~~C~~~~C~~~~  183 (538)
                      +..+.+||++|.||||||+|.|+|||||+++||||.  .|                    .+|+||+.++|.++.|....
T Consensus        16 d~~~~~Y~~~i~iGTPpq~~~v~~DTGS~~lWv~c~--~c--------------------~~Sst~~~v~C~s~~C~~~~   73 (413)
T 3vla_A           16 DASTLQYVTTINQRTPLVSENLVVDLGGRFLWVDCD--QN--------------------YVSSTYRPVRCRTSQCSLSG   73 (413)
T ss_dssp             CTTTCCEEEEEEETTTTEEEEEEEETTCSSEEEECS--SS--------------------CCCTTCEECBTTSHHHHHTT
T ss_pred             cCCCCeEEEEEEcCCCCcceEEEEeCCChhhhcccC--CC--------------------CCCCCcCccCCCcccccccc
Confidence            345678999999999999999999999999999986  23                    25999999999999997531


Q ss_pred             --CC---CC------CCCCCceeEecC-CCCceEEEEEEEEEEEeccCCCCCCC-ccccccEEEEEEEeec--CCCCCCC
Q 009271          184 --SC---KS------LKDPCPYIADYS-TEDTSSSGYLVDDILHLASFSKHAPQ-SSVQSSVIIGCGRKQT--GSYLDGA  248 (538)
Q Consensus       184 --~C---~~------~~~~c~y~~~Y~-dg~ss~~G~l~~D~v~l~~~~~~~~~-~~~~~~~~fGc~~~~~--g~~~~~~  248 (538)
                        .|   .+      .++.|.|.+.|+ |+ +++.|+|++|+|+|+..++...+ ...++++.|||++.+.  |.+   .
T Consensus        74 ~~~~~~c~s~~~~~c~~~~c~~~i~Y~~d~-~~~~G~l~~Dtv~l~~~~g~~~~~~~~v~~~~FGc~~~~~~~g~~---~  149 (413)
T 3vla_A           74 SIACGDCFNGPRPGCNNNTCGVFPENPVIN-TATGGEVAEDVVSVESTDGSSSGRVVTVPRFIFSCAPTSLLQNLA---S  149 (413)
T ss_dssp             CCEEECCSSCCBTTBCSSEEEECCEETTTT-EECCEEEEEEEEEEEEECSSBEEEEEEEEEEEEEEECGGGGTTSC---T
T ss_pred             cCCCcccccCCCCCCCCCcCcceeecCcCC-ceeeeEEEEEEEEecccCCCCcccceeeCCEEEECcccccccCcc---c
Confidence              23   21      134699999994 74 78899999999999854321100 1245789999999873  332   3


Q ss_pred             CCceEEeeCCCCCChHHHHHhcCCCCCceEEeecC--CCCccEEeCCCCCC---------C-ceeeeeeecCCC------
Q 009271          249 APDGVMGLGLGDVSVPSLLAKAGLIQNSFSICFDE--NDSGSVFFGDQGPA---------T-QQSTSFLPIGEK------  310 (538)
Q Consensus       249 ~~dGIlGLG~~~~Sl~sqL~~~g~i~~~FS~cl~~--~~~G~l~fG~~d~~---------~-~~~tplv~~~~~------  310 (538)
                      .+|||||||++++|+++||+++++++++|||||.+  +..|.|+||+.+..         . ..|||++.....      
T Consensus       150 ~~dGIlGLg~~~lSl~sql~~~~~i~~~FS~cL~~~~~~~G~l~fGg~~~~~~p~~~~~g~~l~~tPl~~~~~~~~~~~~  229 (413)
T 3vla_A          150 GVVGMAGLGRTRIALPSQFASAFSFKRKFAMCLSGSTSSNSVIIFGNDPYTFLPNIIVSDKTLTYTPLLTNPVSTSATST  229 (413)
T ss_dssp             TCCEEEECSSSSSSHHHHHHHHHTCCSEEEEECCSCSSSCEEEEEESCCEEETTTEEECTTTSEEEECBCCSSCCSSSCC
T ss_pred             ccccccccCCCCcchHHHHhhhcCCCceEEEeCCCCCCCceEEEECCCcccccccccccCCceeEeecccCCcccccccc
Confidence            67999999999999999999999889999999987  35799999998752         3 779999876422      


Q ss_pred             ----CceEEEeEeEEEECCeEeecC----------CceEEEcCCCccccccHHHHHHHHHHHHHhhccccc--ccccccc
Q 009271          311 ----YDAYFVGVESYCIGNSCLTQS----------GFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRI--SLQGNSW  374 (538)
Q Consensus       311 ----~~~y~V~l~~i~Vgg~~l~~~----------~~~aiiDSGTs~t~LP~~~y~~l~~~~~~~~~~~~~--~~~~~~~  374 (538)
                          ..+|+|+|++|+||++.+...          ..++||||||++|+||+++|++|.++|.+++...+.  ......+
T Consensus       230 ~~~~~~~y~V~l~~IsVgg~~l~~~~~~~~~~~~g~~~aIiDSGTslt~lp~~~y~~l~~a~~~~~~~~~~~~~~~~~~~  309 (413)
T 3vla_A          230 QGEPSVEYFIGVKSIKINSKIVALNTSLLSISSAGLGGTKISTINPYTVLETSIYKAVTEAFIKESAARNITRVASVAPF  309 (413)
T ss_dssp             TTCCCCSCEECCCEEEETTEEECCCGGGTSBCTTSCBCEEECSSSSSEEEEHHHHHHHHHHHHHHHHHTTCCEECCCTTC
T ss_pred             ccCCCceEEEEEEEEEECCEEccCCchhcccccCCCCCEEEECCCCcEEcCHHHHHHHHHHHHHHhcccCCCcCCCCCCC
Confidence                269999999999999998642          357999999999999999999999999988752111  1122456


Q ss_pred             cccccccccc----cccCccEEEEEcC-CeeeeeecceeEEeecCCcceEEEEEEecCC---CceeEcceeeeeeEEEEe
Q 009271          375 KYCYNASSEE----MLKVPDMRLIFSK-NQSFVVRNHIFSFPENEGFTVFCLTVMSTDG---DYGIIGQNFMMGHRIVFD  446 (538)
Q Consensus       375 ~~Cy~~~~~~----~~~~P~it~~f~g-g~~~~v~~~~y~~~~~~~~~~~Cl~i~~~~~---~~~IlG~~fl~~~yvVFD  446 (538)
                      +.||+.++..    ...+|+|+|+|+| +..|.|++++|++...+  +.+|++|+..+.   +.||||+.||++||+|||
T Consensus       310 ~~C~~~~~~~~~~~~~~lP~i~f~f~g~~~~~~l~~~~y~~~~~~--~~~Cl~~~~~~~~~~~~~IlGd~fl~~~~vvfD  387 (413)
T 3vla_A          310 GACFSTDNILSTRLGPSVPSIDLVLQSESVVWTITGSNSMVYIND--NVVCLGVVDGGSNLRTSIVIGGHQLEDNLVQFD  387 (413)
T ss_dssp             SCEEECTTCCEETTEECCCCEEEECSSTTCEEEECHHHHEEEEET--TEEEECEEEEESSCSSSEEECHHHHTTEEEEEE
T ss_pred             cceeccCCccccccccCCCcEEEEEcCCcEEEEeCccceEEEeCC--CcEEEEEEecCCCcccceeEehhhhcCeEEEEE
Confidence            8899987532    2479999999976 48899999999987653  579999987642   589999999999999999


Q ss_pred             CCCCEEEEeec
Q 009271          447 RENLKLAWSHS  457 (538)
Q Consensus       447 ~e~~rIGfa~~  457 (538)
                      ++++|||||++
T Consensus       388 ~~~~riGfa~~  398 (413)
T 3vla_A          388 LATSRVGFSGT  398 (413)
T ss_dssp             TTTTEEEEEEE
T ss_pred             CCCCEEEEEEe
Confidence            99999999995


No 2  
>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A*
Probab=100.00  E-value=2.4e-55  Score=457.71  Aligned_cols=313  Identities=23%  Similarity=0.277  Sum_probs=259.0

Q ss_pred             eeeccccccEEEEEEEecCCCeEEEEEEEcCCCceeEecC-CC---CCCCCccccccccCCCCCCCCCCCCCCCccccCC
Q 009271          100 HFFGNQFYWLHYTWIDIGTPNVSFLVALDAGSNLLWVPCQ-CI---QCAPLSASYYTSLDRNLSEYDPSSSSSSKNVSCS  175 (538)
Q Consensus       100 ~~~~~~~~~~yy~~v~iGtP~q~~~v~lDTGS~~~Wv~c~-C~---~C~~~~~~~~~~~~~~~~~f~ps~SsT~~~~~C~  175 (538)
                      +++.|+.+..|+++|.||||+|+|.|+|||||+++||+|. |.   .|..            ++.|+|++|+|++...  
T Consensus        10 ~~l~~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~C~~------------~~~y~~~~SsT~~~~~--   75 (361)
T 1mpp_A           10 PGLYDFDLEEYAIPVSIGTPGQDFYLLFDTGSSDTWVPHKGCDNSEGCVG------------KRFFDPSSSSTFKETD--   75 (361)
T ss_dssp             EEEEETTTTEEEEEEEETTTTEEEEEEEETTCCCCEEEBTTCCGGGTCCS------------SCCBCGGGCTTCEEEE--
T ss_pred             EEeecCCCCEEEEEEEECCCCcEEEEEEcCCCCCeEECCCCCCCCccCCC------------CCcCCCccCCceEecC--
Confidence            5677788899999999999999999999999999999998 87   6753            3689999999999764  


Q ss_pred             CCCCCCCCCCCCCCCCCceeEecCCCCceEEEEEEEEEEEeccCCCCCCCccccccEEEEEEEeecC-----CCCCCCCC
Q 009271          176 HPLCKSRSSCKSLKDPCPYIADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIGCGRKQTG-----SYLDGAAP  250 (538)
Q Consensus       176 ~~~C~~~~~C~~~~~~c~y~~~Y~dg~ss~~G~l~~D~v~l~~~~~~~~~~~~~~~~~fGc~~~~~g-----~~~~~~~~  250 (538)
                                      |.|.+.|++| + +.|.+++|+|+|++.        .+.++.|||++.+.+     .+......
T Consensus        76 ----------------~~~~i~Yg~G-s-~~G~~~~D~v~~g~~--------~v~~~~fg~~~~~~~~~~~~~~~~~~~~  129 (361)
T 1mpp_A           76 ----------------YNLNITYGTG-G-ANGIYFRDSITVGGA--------TVKQQTLAYVDNVSGPTAEQSPDSELFL  129 (361)
T ss_dssp             ----------------EEEEEECSSC-E-EEEEEEEEEEEETTE--------EEEEEEEEEEEEEESGGGSSCTTCSSCC
T ss_pred             ----------------CeEEEEECCc-e-EEEEEEEEEEEECCE--------EEeceEEEEEEeccCccccccccccCCC
Confidence                            8999999996 4 799999999999864        368899999999887     44333467


Q ss_pred             ceEEeeCCCCCC------------hHHHHHhcCCCC-CceEEeecCC-CCccEEeCCCCCCCc----eeeeeeecCCCCc
Q 009271          251 DGVMGLGLGDVS------------VPSLLAKAGLIQ-NSFSICFDEN-DSGSVFFGDQGPATQ----QSTSFLPIGEKYD  312 (538)
Q Consensus       251 dGIlGLG~~~~S------------l~sqL~~~g~i~-~~FS~cl~~~-~~G~l~fG~~d~~~~----~~tplv~~~~~~~  312 (538)
                      +||||||+..++            ++.+|+++|+|. ++||+||.++ ..|.|+||++|+.++    .|+|++.......
T Consensus       130 ~GilGLg~~~~s~~~~~~~~~~~~~~~~l~~~g~i~~~~FS~~l~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~~~  209 (361)
T 1mpp_A          130 DGIFGAAYPDNTAMEAEYGDTYNTVHVNLYKQGLISSPVFSVYMNTNDGGGQVVFGGVNNTLLGGDIQYTDVLKSRGGYF  209 (361)
T ss_dssp             CEEEECSCGGGSHHHHHHSCCCCCHHHHHHHTTSSSSSEEEEECCCSSSEEEEEESSCCGGGBSSCCEEEECEEETTEEE
T ss_pred             CCEEEeCCcccccccccccccCCCHHHHHHHcCCCCCcEEEEEecCCCCCcEEEEecCChhhcCCceEEEEcccCCCcee
Confidence            999999997554            566899999996 9999999985 579999999998754    5999987543333


Q ss_pred             eEEEeEeEEEECCeEee-cCCceEE-EcCCCccccccHHHHHHHHHHHHHhhcccccccccccccccccccccccccC-c
Q 009271          313 AYFVGVESYCIGNSCLT-QSGFQAL-VDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYCYNASSEEMLKV-P  389 (538)
Q Consensus       313 ~y~V~l~~i~Vgg~~l~-~~~~~ai-iDSGTs~t~LP~~~y~~l~~~~~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~-P  389 (538)
                      +|.|.|++|.|+++.+. .....+| |||||++++||+++|++|.+++.+....    ..+.....|+.     ...+ |
T Consensus       210 ~~~v~l~~i~v~~~~~~~~~~~~ai~iDSGTt~~~lP~~~~~~l~~~~~~~~~~----~~g~~~~~C~~-----~~~~~p  280 (361)
T 1mpp_A          210 FWDAPVTGVKIDGSDAVSFDGAQAFTIDTGTNFFIAPSSFAEKVVKAALPDATE----SQQGYTVPCSK-----YQDSKT  280 (361)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEEEEEEEETTCCSEEEEHHHHHHHHHHHCTTCEE----ETTEEEEEHHH-----HTTCCC
T ss_pred             EEEEEEeEEEECCeeeccCCCCEEEEECCCCCceeCCHHHHHHHHHHhCCcccC----CCCcEEEECCC-----cccCCC
Confidence            89999999999998874 3456799 9999999999999999999888654321    11112234554     3466 9


Q ss_pred             cEEEEEc-C-----CeeeeeecceeEEeecCCcceEEE-EEEecCCCceeEcceeeeeeEEEEeCCCCEEEEeecCCCcc
Q 009271          390 DMRLIFS-K-----NQSFVVRNHIFSFPENEGFTVFCL-TVMSTDGDYGIIGQNFMMGHRIVFDRENLKLAWSHSKCEEV  462 (538)
Q Consensus       390 ~it~~f~-g-----g~~~~v~~~~y~~~~~~~~~~~Cl-~i~~~~~~~~IlG~~fl~~~yvVFD~e~~rIGfa~~~C~~~  462 (538)
                      .|+|+|. |     |.++.|++++|++....+ ...|+ +|++..++.||||+.|||++|+|||++++|||||+++|...
T Consensus       281 ~i~f~f~~g~~~~~g~~~~i~~~~y~~~~~~~-~~~C~~~i~~~~~~~~iLG~~fl~~~yvvfD~~~~~igfa~~~~~~~  359 (361)
T 1mpp_A          281 TFSLVLQKSGSSSDTIDVSVPISKMLLPVDKS-GETCMFIVLPDGGNQFIVGNLFLRFFVNVYDFGKNRIGFAPLASGYE  359 (361)
T ss_dssp             EEEEEEECTTCSSCEEEEEEEGGGGEEECSSS-SCEEEESEEEESSSCCEEEHHHHTTEEEEEETTTTEEEEEEBCTTTC
T ss_pred             cEEEEEEcCCcCCCCeEEEECHHHhEEecCCC-CCeeEEEEEeCCCCCEEEChHHhccEEEEEECCCCEEEEEEcccCCC
Confidence            9999994 4     789999999999986533 56895 88876556899999999999999999999999999999864


No 3  
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max}
Probab=100.00  E-value=1.3e-55  Score=466.30  Aligned_cols=335  Identities=21%  Similarity=0.350  Sum_probs=261.9

Q ss_pred             eeec-cccccEEEEEEEecCCCeEEEEEEEcCCCceeEecCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCCCC
Q 009271          100 HFFG-NQFYWLHYTWIDIGTPNVSFLVALDAGSNLLWVPCQCIQCAPLSASYYTSLDRNLSEYDPSSSSSSKNVSCSHPL  178 (538)
Q Consensus       100 ~~~~-~~~~~~yy~~v~iGtP~q~~~v~lDTGS~~~Wv~c~C~~C~~~~~~~~~~~~~~~~~f~ps~SsT~~~~~C~~~~  178 (538)
                      +++. |+.+..||++|.||||||+|.|+|||||+++||+|.  .|                    .+|+|++.++|.++.
T Consensus        12 ~pl~~~~~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~--~~--------------------~~Sst~~~~~C~s~~   69 (403)
T 3aup_A           12 LPVQNDGSTGLHWANLQKRTPLMQVPVLVDLNGNHLWVNCE--QQ--------------------YSSKTYQAPFCHSTQ   69 (403)
T ss_dssp             EEEEECTTTCCEEEEEEETTTTEEEEEEEETTCSSEEEECS--SC--------------------CCCSSCBCCCTTBHH
T ss_pred             EeeecCCCCceEEEEEECCCCCceeEEEEECCCCceeECCC--CC--------------------CCCCCCCccCCCCcc
Confidence            5555 667889999999999999999999999999999985  12                    359999999999888


Q ss_pred             CCCCC--C---CCCC------CCCCceeEecC-CCCceEEEEEEEEEEEeccCCCCC---CCccccccEEEEEEEeecCC
Q 009271          179 CKSRS--S---CKSL------KDPCPYIADYS-TEDTSSSGYLVDDILHLASFSKHA---PQSSVQSSVIIGCGRKQTGS  243 (538)
Q Consensus       179 C~~~~--~---C~~~------~~~c~y~~~Y~-dg~ss~~G~l~~D~v~l~~~~~~~---~~~~~~~~~~fGc~~~~~g~  243 (538)
                      |....  .   |.++      ++.|.|.+.|+ |+ +++.|.+++|+|+|++..+..   .....++++.|||++.+.+.
T Consensus        70 C~~~~~~~c~~c~~~~~s~~~~~~~~~~~~Y~~d~-~~~~G~~~~Dtv~ig~~~g~~~~~~~~~~v~~~~Fg~~~~~~~~  148 (403)
T 3aup_A           70 CSRANTHQCLSCPAASRPGCHKNTCGLMSTNPITQ-QTGLGELGEDVLAIHATQGSTQQLGPLVTVPQFLFSCAPSFLVQ  148 (403)
T ss_dssp             HHHTTCCCEEECSSSCBTTBCSSEEEEEEEETTTT-EEEEEEEEEEEEEEEECCC----CCCEEEEEEEEEEEECGGGGS
T ss_pred             ccCccccCccccCCCCCCCCCCCcceeEeecCCCC-ceeeEEEEEEEEEecccCCccccccccccccCEEEECCcccccc
Confidence            86531  1   2121      24699999998 54 789999999999998743210   00124578999999987544


Q ss_pred             -CCCCCCCceEEeeCCCCCChHHHHHhcCCCCCceEEeecC--CCCccEEeCCCCCC------------CceeeeeeecC
Q 009271          244 -YLDGAAPDGVMGLGLGDVSVPSLLAKAGLIQNSFSICFDE--NDSGSVFFGDQGPA------------TQQSTSFLPIG  308 (538)
Q Consensus       244 -~~~~~~~dGIlGLG~~~~Sl~sqL~~~g~i~~~FS~cl~~--~~~G~l~fG~~d~~------------~~~~tplv~~~  308 (538)
                       +.. ...|||||||++.+|+++||++..+.+++||+||.+  +..|.|+||+ |+.            ...|+|++...
T Consensus       149 ~~~~-~~~dGIlGLg~~~~s~~~ql~~~~~~~~~FS~~L~~~~~~~G~l~fGg-d~~~~~~~~G~~~~~~l~~~Pl~~~~  226 (403)
T 3aup_A          149 KGLP-RNTQGVAGLGHAPISLPNQLASHFGLQRQFTTCLSRYPTSKGAIIFGD-APNNMRQFQNQDIFHDLAFTPLTITL  226 (403)
T ss_dssp             SSSS-TTCCEEEECSSSTTSHHHHHHHHHTCCSEEEEECCSCTTSCEEEEESC-HHHHC--CTTCCTTTTEEEEECEECT
T ss_pred             cCCC-CCCceEEECCCCCcCHHHHHHhhcCCCCeEEEEcCCCCCCCeeEEECC-CchhccccccccccCceeecccccCC
Confidence             322 367999999999999999998665556999999987  4679999999 643            44699998753


Q ss_pred             CCCceEEEeEeEEEECCeEe-ec-C-C--------ceEEEcCCCccccccHHHHHHHHHHHHHhhccccccccccccccc
Q 009271          309 EKYDAYFVGVESYCIGNSCL-TQ-S-G--------FQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYC  377 (538)
Q Consensus       309 ~~~~~y~V~l~~i~Vgg~~l-~~-~-~--------~~aiiDSGTs~t~LP~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C  377 (538)
                        ..+|.|+|++|.||++.+ .. . .        .++||||||++++||+++|++|.++|.+++...........+++|
T Consensus       227 --~~~y~v~l~~i~v~g~~~~~~~~~~~~~~~~g~~~aiiDSGTt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~c  304 (403)
T 3aup_A          227 --QGEYNVRVNSIRINQHSVFPLNKISSTIVGSTSGGTMISTSTPHMVLQQSVYQAFTQVFAQQLPKQAQVKSVAPFGLC  304 (403)
T ss_dssp             --TSCEEECEEEEEETTEEEECC------------CCEEECSSCSSEEECHHHHHHHHHHHHHTSCGGGEECCCTTCSCE
T ss_pred             --CCcceEEEEEEEECCEEcccCChhHeeeccCCCCCEEEECCCccEEeCHHHHHHHHHHHHHHhccccccCCCCCCCce
Confidence              258999999999999988 42 1 1        249999999999999999999999998876542221112245678


Q ss_pred             ccccccccccCccEEEEEcCC--eeeeeecceeEEeecCCcceEEEEEEecCC---CceeEcceeeeeeEEEEeCCCCEE
Q 009271          378 YNASSEEMLKVPDMRLIFSKN--QSFVVRNHIFSFPENEGFTVFCLTVMSTDG---DYGIIGQNFMMGHRIVFDRENLKL  452 (538)
Q Consensus       378 y~~~~~~~~~~P~it~~f~gg--~~~~v~~~~y~~~~~~~~~~~Cl~i~~~~~---~~~IlG~~fl~~~yvVFD~e~~rI  452 (538)
                      |+  |.....+|.|+|+|.|+  ..|.|++++|++...+  +.+|++|+..+.   +.||||+.||+++|+|||++++||
T Consensus       305 ~~--c~~~~~~P~i~f~f~g~~~~~~~l~~~~y~~~~~~--~~~C~~~~~~~~~~~~~~ILG~~fl~~~yvvfD~~~~rI  380 (403)
T 3aup_A          305 FN--SNKINAYPSVDLVMDKPNGPVWRISGEDLMVQAQP--GVTCLGVMNGGMQPRAEITLGARQLEENLVVFDLARSRV  380 (403)
T ss_dssp             EC--GGGCCCCCCEEEEESSTTCCEEEECHHHHEEEC-----CEEECEEECCSCCSSSEEECHHHHTTSCEEEETTTTEE
T ss_pred             EE--CCCcCcCCcEEEEEcCCCceEEEEcccceEEEcCC--CeEEEEEEcCCCCCCCcEEEChHHhcCeEEEEECCCCEE
Confidence            86  44444799999999776  6899999999987643  579999988753   589999999999999999999999


Q ss_pred             EE-------eecCCCccccc
Q 009271          453 AW-------SHSKCEEVIDK  465 (538)
Q Consensus       453 Gf-------a~~~C~~~~~~  465 (538)
                      ||       ++++|.++.+.
T Consensus       381 Gf~A~~~~~~~~~C~~~~~~  400 (403)
T 3aup_A          381 GFSTSSLHSHGVKCADLFNF  400 (403)
T ss_dssp             EEESSCGGGGTCCGGGSCCT
T ss_pred             EEecccccccCCCccccccc
Confidence            99       77888876543


No 4  
>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens}
Probab=100.00  E-value=3.3e-55  Score=455.04  Aligned_cols=307  Identities=22%  Similarity=0.356  Sum_probs=250.1

Q ss_pred             eeeeccccccEEEEEEEecCCCeEEEEEEEcCCCceeEecC-CC--CCCCCccccccccCCCCCCCCCCCCCCCccccCC
Q 009271           99 THFFGNQFYWLHYTWIDIGTPNVSFLVALDAGSNLLWVPCQ-CI--QCAPLSASYYTSLDRNLSEYDPSSSSSSKNVSCS  175 (538)
Q Consensus        99 ~~~~~~~~~~~yy~~v~iGtP~q~~~v~lDTGS~~~Wv~c~-C~--~C~~~~~~~~~~~~~~~~~f~ps~SsT~~~~~C~  175 (538)
                      .+++.|+.+..||++|.||||+|+|.|++||||+++||+|. |.  .|..            ++.|+|++|+|++..   
T Consensus        14 ~~~l~n~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~C~~~~C~~------------~~~y~~~~SsT~~~~---   78 (351)
T 1tzs_A           14 KEPLINYLDMEYFGTISIGSPPQNFTVIFDTGSSNLWVPSVYCTSPACKT------------HSRFQPSQSSTYSQP---   78 (351)
T ss_dssp             CCTTGGGSSSCCCEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSGGGTT------------SCCBCGGGCTTCBCC---
T ss_pred             ceeceecCCCEEEEEEEECCCCeEEEEEEeCCCcceEEecCCCCccccCC------------CCcCCcccCcceEEC---
Confidence            45666778889999999999999999999999999999998 85  5643            468999999999964   


Q ss_pred             CCCCCCCCCCCCCCCCCceeEecCCCCceEEEEEEEEEEEeccCCCCCCCccccccEEEEEEEeecCCCCCCCCCceEEe
Q 009271          176 HPLCKSRSSCKSLKDPCPYIADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMG  255 (538)
Q Consensus       176 ~~~C~~~~~C~~~~~~c~y~~~Y~dg~ss~~G~l~~D~v~l~~~~~~~~~~~~~~~~~fGc~~~~~g~~~~~~~~dGIlG  255 (538)
                                     .|.|.+.|++| + +.|.+++|+|+|++.        ...++.|||++.+.+.++.....|||||
T Consensus        79 ---------------~~~~~i~Yg~G-s-~~G~~~~D~v~ig~~--------~~~~~~fg~~~~~~~~~~~~~~~~GilG  133 (351)
T 1tzs_A           79 ---------------GQSFSIQYGTG-S-LSGIIGADQVSVEGL--------TVVGQQFGESVTEPGQTFVDAEFDGILG  133 (351)
T ss_dssp             ---------------SCEEEEESSSC-E-EEEEEEEEEEEETTE--------EEEEEEEEEECSCCCGGGGGCSCSEEEE
T ss_pred             ---------------CCEEEEEeCCC-C-eEEEEEEeEEEECCe--------EECCeEEEEEEeccccccccCCCceEEe
Confidence                           48999999996 4 789999999999864        3678999999988775443346799999


Q ss_pred             eCCCCCC------hHHHHHhcCCCC-CceEEeecCCC----CccEEeCCCCCCCc----eeeeeeecCCCCceEEEeEeE
Q 009271          256 LGLGDVS------VPSLLAKAGLIQ-NSFSICFDEND----SGSVFFGDQGPATQ----QSTSFLPIGEKYDAYFVGVES  320 (538)
Q Consensus       256 LG~~~~S------l~sqL~~~g~i~-~~FS~cl~~~~----~G~l~fG~~d~~~~----~~tplv~~~~~~~~y~V~l~~  320 (538)
                      ||+..++      ++.+|+++|+|. ++||+||.+..    .|.|+||++|+.++    .|+|++.    ..+|.|.|++
T Consensus       134 Lg~~~~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~~~v~l~~  209 (351)
T 1tzs_A          134 LGYPSLAVGGVTPVFDNMMAQNLVDLPMFSVYMSSNPEGGAGSELIFGGYDHSHFSGSLNWVPVTK----QAYWQIALDN  209 (351)
T ss_dssp             CSCGGGSGGGCCCHHHHHHHTTCCSSSEEEEECCCCC--CTTCEEEETSCCGGGBCSCCEEEECSE----ETTEEEEEEE
T ss_pred             cCCccccccCCCcHHHHHHHCCCCCCCEEEEEEcCCCCCCCCCEEEECCCCHHHcCCceEEEecCC----CceEEEEeCE
Confidence            9998754      778999999996 99999998752    79999999998764    4888864    3689999999


Q ss_pred             EEECCeEee-cCCceEEEcCCCccccccHHHHHHHHHHHHHhhcccccccccccccccccccccccccCccEEEEEcCCe
Q 009271          321 YCIGNSCLT-QSGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMRLIFSKNQ  399 (538)
Q Consensus       321 i~Vgg~~l~-~~~~~aiiDSGTs~t~LP~~~y~~l~~~~~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~it~~f~gg~  399 (538)
                      |.||++.+. .....+||||||++++||+++|++|.+++.+...    .  +.....|+.     ...+|+|+|+| ||.
T Consensus       210 i~v~~~~~~~~~~~~aiiDSGTs~~~lP~~~~~~l~~~~~~~~~----~--g~~~~~C~~-----~~~~P~i~f~f-~g~  277 (351)
T 1tzs_A          210 IQVGGTVMFCSEGCQAIVDTGTSLITGPSDKIKQLQNAIGAAPV----D--GEYAVECAN-----LNVMPDVTFTI-NGV  277 (351)
T ss_dssp             EEETTEEEECTTCEEEEECTTCSSEEECHHHHHHHHHHHTCEEC----S--SSEEECGGG-----GGGSCCEEEEE-TTE
T ss_pred             EEECCceEEcCCCceEEeccCCcceeCCHHHHHHHHHHhCCccc----C--CeEEEeCCC-----CccCCcEEEEE-CCE
Confidence            999999854 3567899999999999999999999988754321    1  111224554     35789999999 779


Q ss_pred             eeeeecceeEEeecCCcceEEE-EEEecC-----CCceeEcceeeeeeEEEEeCCCCEEEEeecCCCc
Q 009271          400 SFVVRNHIFSFPENEGFTVFCL-TVMSTD-----GDYGIIGQNFMMGHRIVFDRENLKLAWSHSKCEE  461 (538)
Q Consensus       400 ~~~v~~~~y~~~~~~~~~~~Cl-~i~~~~-----~~~~IlG~~fl~~~yvVFD~e~~rIGfa~~~C~~  461 (538)
                      ++.|++++|++...+.....|+ +|+..+     .+.||||+.||+++|+|||++++|||||+++|..
T Consensus       278 ~~~i~~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~rigfA~~~~~s  345 (351)
T 1tzs_A          278 PYTLSPTAYTLLDFVDGMQFCSSGFQGLDIHPPAGPLWILGDVFIRQFYSVFDRGNNRVGLAPAVPWS  345 (351)
T ss_dssp             EEEECTTTSEECC-----CCEEESEEECCCCTTTCSCEEECHHHHHHEEEEEETTTTEEEEEEBC---
T ss_pred             EEEECHHHhEeeccCCCCCeEEEEEEECCCCCCCCCeEEEChHHhhheEEEEECCCCEEEEEECCccc
Confidence            9999999999876432246896 687652     4589999999999999999999999999999975


No 5  
>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens}
Probab=100.00  E-value=3.8e-55  Score=458.71  Aligned_cols=303  Identities=23%  Similarity=0.403  Sum_probs=250.5

Q ss_pred             eeeeccccccEEEEEEEecCCCeEEEEEEEcCCCceeEecC-CC----CCCCCccccccccCCCCCCCCCCCCCCCcccc
Q 009271           99 THFFGNQFYWLHYTWIDIGTPNVSFLVALDAGSNLLWVPCQ-CI----QCAPLSASYYTSLDRNLSEYDPSSSSSSKNVS  173 (538)
Q Consensus        99 ~~~~~~~~~~~yy~~v~iGtP~q~~~v~lDTGS~~~Wv~c~-C~----~C~~~~~~~~~~~~~~~~~f~ps~SsT~~~~~  173 (538)
                      .+++.|+.+..||++|.||||||+|.|++||||+++||+|. |.    .|..            ++.|+|++|+||+.. 
T Consensus        52 ~~~l~n~~~~~Y~~~I~IGTP~Q~f~vi~DTGSs~lWV~s~~C~~~~~~C~~------------~~~y~~~~SsT~~~~-  118 (383)
T 2x0b_A           52 SVILTNYMDTQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVY------------HKLFDASDSSSYKHN-  118 (383)
T ss_dssp             EEEEEEETTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTSCTTSHHHHT------------SCCBCGGGCTTCEEE-
T ss_pred             eEeeeecCCCEEEEEEEECCCCcEEEEEEeCCCCCeEEeccCCCCCcccccC------------CCCCCCCCCCcEEEC-
Confidence            36677889999999999999999999999999999999998 74    4643            368999999999975 


Q ss_pred             CCCCCCCCCCCCCCCCCCCceeEecCCCCceEEEEEEEEEEEeccCCCCCCCccccccEEEEEEEeecCCCCCCCCCceE
Q 009271          174 CSHPLCKSRSSCKSLKDPCPYIADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGV  253 (538)
Q Consensus       174 C~~~~C~~~~~C~~~~~~c~y~~~Y~dg~ss~~G~l~~D~v~l~~~~~~~~~~~~~~~~~fGc~~~~~g~~~~~~~~dGI  253 (538)
                                       .|.|.++|++| + ++|.+++|+|+|++.        .+. +.|||++.+.|..+.....|||
T Consensus       119 -----------------~~~~~i~Yg~G-s-~~G~~~~Dtv~ig~~--------~v~-~~Fg~a~~~~g~~f~~~~~dGI  170 (383)
T 2x0b_A          119 -----------------GTELTLRYSTG-T-VSGFLSQDIITVGGI--------TVT-QMFGEVTEMPALPFMLAEFDGV  170 (383)
T ss_dssp             -----------------EEEEEEECSSC-E-EEEEEEEEEEEETTE--------EEE-EEEEEEEECCHHHHTTCSSSEE
T ss_pred             -----------------CcEEEEEcCCc-c-EEEEEEeeEEEEcCc--------eEE-EEEEEEEecCCcccccCCCceE
Confidence                             38999999996 4 899999999999874        356 9999999987754333478999


Q ss_pred             EeeCCCCCC------hHHHHHhcCCCC-CceEEeecCC--C----CccEEeCCCCCCCce----eeeeeecCCCCceEEE
Q 009271          254 MGLGLGDVS------VPSLLAKAGLIQ-NSFSICFDEN--D----SGSVFFGDQGPATQQ----STSFLPIGEKYDAYFV  316 (538)
Q Consensus       254 lGLG~~~~S------l~sqL~~~g~i~-~~FS~cl~~~--~----~G~l~fG~~d~~~~~----~tplv~~~~~~~~y~V  316 (538)
                      ||||+..++      ++.+|.++|+|. ++||+||.++  .    .|.|+|||+|+.++.    |+|+..    ..+|.|
T Consensus       171 lGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~~~~~~~~G~l~fGg~d~~~y~G~l~~~pv~~----~~~w~v  246 (383)
T 2x0b_A          171 VGMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNRDSENSQSLGGQIVLGGSDPQHYEGNFHYINLIK----TGVWQI  246 (383)
T ss_dssp             EECSCGGGCGGGCCCHHHHHHTTTCCSSSEEEEEECCSCC----CCEEEEESSCCGGGEEEEEEEEEBSS----TTSCEE
T ss_pred             eccCCCccccCCCCcHHHHHHhCCCCCCCEEEEEEcCCCCcccCCCcEEEECCcChHHcCCceEEEEcCC----CceEEE
Confidence            999998764      678999999996 9999999875  2    799999999998753    888753    369999


Q ss_pred             eEeEEEECCeEe-ecCCceEEEcCCCccccccHHHHHHHHHHHHHhhcccccccccccccccccccccccccCccEEEEE
Q 009271          317 GVESYCIGNSCL-TQSGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMRLIF  395 (538)
Q Consensus       317 ~l~~i~Vgg~~l-~~~~~~aiiDSGTs~t~LP~~~y~~l~~~~~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~it~~f  395 (538)
                      .+++|.||++.+ ......+||||||+++++|.++|++|.+++.+..      ..+.....|+.     ...+|+|+|+|
T Consensus       247 ~l~~i~v~~~~~~~~~~~~aiiDTGTs~~~lP~~~~~~i~~~i~a~~------~~g~~~v~C~~-----~~~~P~i~f~~  315 (383)
T 2x0b_A          247 QMKGVSVGSSTLLCEDGCLALVDTGASYISGSTSSIEKLMEALGAKK------RLFDYVVKCNE-----GPTLPDISFHL  315 (383)
T ss_dssp             EECEEEESSCCCBSTTCEEEEECTTCSSEEECHHHHHHHHHHHTCEE------CSSCEEEEGGG-----TTTCCCEEEEE
T ss_pred             EEeEEEeCCceEEcCCCcEEEEcCCCceEEcCHHHHHHHHHHhCCcc------cCCcEEEeccc-----cccCceEEEEE
Confidence            999999999874 3456789999999999999999999998875432      11112223554     45789999999


Q ss_pred             cCCeeeeeecceeEEeecCCcceEEE-EEEecC-----CCceeEcceeeeeeEEEEeCCCCEEEEeecC
Q 009271          396 SKNQSFVVRNHIFSFPENEGFTVFCL-TVMSTD-----GDYGIIGQNFMMGHRIVFDRENLKLAWSHSK  458 (538)
Q Consensus       396 ~gg~~~~v~~~~y~~~~~~~~~~~Cl-~i~~~~-----~~~~IlG~~fl~~~yvVFD~e~~rIGfa~~~  458 (538)
                       ||..|.|++++|++...+.....|+ +|+..+     ++.||||+.||++||+|||++|+|||||+++
T Consensus       316 -~g~~~~l~~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~ILGd~Fl~~~y~vfD~~~~rIGfA~a~  383 (383)
T 2x0b_A          316 -GGKEYTLTSADYVFQESYSSKKLCTLAIHAMDIPPPTGPTWALGATFIRKFYTEFDRRNNRIGFALAR  383 (383)
T ss_dssp             -TTEEEEECHHHHBCCCCCCTTSEEEBSEEECCCCTTTCSCEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred             -CCEEEEECHHHhEeeccCCCCCeEEEEEEecccCCCCCCcEEEChHHhcceEEEEECCCCEEeEEEcC
Confidence             6799999999999876543246996 687652     4589999999999999999999999999863


No 6  
>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A*
Probab=100.00  E-value=2.2e-54  Score=444.95  Aligned_cols=299  Identities=22%  Similarity=0.373  Sum_probs=251.3

Q ss_pred             eeeccccccEEEEEEEecCCCeEEEEEEEcCCCceeEecC-CCC--CCCCccccccccCCCCCCCCCCCCCCCccccCCC
Q 009271          100 HFFGNQFYWLHYTWIDIGTPNVSFLVALDAGSNLLWVPCQ-CIQ--CAPLSASYYTSLDRNLSEYDPSSSSSSKNVSCSH  176 (538)
Q Consensus       100 ~~~~~~~~~~yy~~v~iGtP~q~~~v~lDTGS~~~Wv~c~-C~~--C~~~~~~~~~~~~~~~~~f~ps~SsT~~~~~C~~  176 (538)
                      +++.|+.+..||++|.||||+|+|.|++||||+++||+|. |..  |..            ++.|+|++|+|++..    
T Consensus         5 ~~l~~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~lWv~~~~C~~~~C~~------------~~~y~~~~SsT~~~~----   68 (329)
T 1dpj_A            5 VPLTNYLNAQYYTDITLGTPPQNFKVILDTGSSNLWVPSNECGSLACFL------------HSKYDHEASSSYKAN----   68 (329)
T ss_dssp             EECEEETTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSHHHHT------------SCCBCGGGCTTCEEE----
T ss_pred             eeeeecCCCEEEEEEEECCCCcEEEEEEeCCCcCeEEecCCCCCcccCC------------cCcCCcccCcCeEEC----
Confidence            5666778889999999999999999999999999999998 865  543            368999999999964    


Q ss_pred             CCCCCCCCCCCCCCCCceeEecCCCCceEEEEEEEEEEEeccCCCCCCCccccccEEEEEEEeecC-CCCCCCCCceEEe
Q 009271          177 PLCKSRSSCKSLKDPCPYIADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIGCGRKQTG-SYLDGAAPDGVMG  255 (538)
Q Consensus       177 ~~C~~~~~C~~~~~~c~y~~~Y~dg~ss~~G~l~~D~v~l~~~~~~~~~~~~~~~~~fGc~~~~~g-~~~~~~~~dGIlG  255 (538)
                                    .|.|.+.|++|  ++.|.+++|+|+|++.        ..+++.|||++.+.+ .|.. ...|||||
T Consensus        69 --------------~~~~~i~Yg~G--s~~G~~~~D~v~ig~~--------~~~~~~fg~~~~~~~~~f~~-~~~~GilG  123 (329)
T 1dpj_A           69 --------------GTEFAIQYGTG--SLEGYISQDTLSIGDL--------TIPKQDFAEATSEPGLTFAF-GKFDGILG  123 (329)
T ss_dssp             --------------EEEEEEEETTE--EEEEEEEEEEEEETTE--------EEEEEEEEEEEECCHHHHTT-CSCSEEEE
T ss_pred             --------------CcEEEEEECCc--eEEEEEEEEEEEECCe--------EECCeEEEEEEecCcccccc-CCcceEEE
Confidence                          48999999996  5899999999999864        367899999998876 3332 36799999


Q ss_pred             eCCCCCC------hHHHHHhcCCCC-CceEEeecCC-----CCccEEeCCCCCCCce----eeeeeecCCCCceEEEeEe
Q 009271          256 LGLGDVS------VPSLLAKAGLIQ-NSFSICFDEN-----DSGSVFFGDQGPATQQ----STSFLPIGEKYDAYFVGVE  319 (538)
Q Consensus       256 LG~~~~S------l~sqL~~~g~i~-~~FS~cl~~~-----~~G~l~fG~~d~~~~~----~tplv~~~~~~~~y~V~l~  319 (538)
                      ||+..++      +..+|+++|+|+ ++||+||.+.     ..|.|+||++|+.++.    |+|+..    ..+|.|.++
T Consensus       124 Lg~~~~s~~~~~~~~~~l~~qg~i~~~~Fs~~l~~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~~~v~l~  199 (329)
T 1dpj_A          124 LGYDTISVDKVVPPFYNAIQQDLLDEKRFAFYLGDTSKDTENGGEATFGGIDESKFKGDITWLPVRR----KAYWEVKFE  199 (329)
T ss_dssp             CSCGGGCGGGCCCHHHHHHHTTCCSSSEEEEEECCGGGTCSSSEEEEESSCCGGGEEEEEEEEECSS----BTTBEEEEE
T ss_pred             eCCchhhccCCCCHHHHHHhcCCcCCCEEEEEecCCCCCCCCCcEEEEcCCChhhcCCceEEEEcCC----CceEEEEee
Confidence            9998765      457899999996 9999999764     3699999999987653    788753    368999999


Q ss_pred             EEEECCeEeecCCceEEEcCCCccccccHHHHHHHHHHHHHhhcccccccccccccccccccccccccCccEEEEEcCCe
Q 009271          320 SYCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMRLIFSKNQ  399 (538)
Q Consensus       320 ~i~Vgg~~l~~~~~~aiiDSGTs~t~LP~~~y~~l~~~~~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~it~~f~gg~  399 (538)
                      +|.||++.+......+||||||++++||+++|++|.+++.+.    .      ....||.++|.....+|+|+|+| +|.
T Consensus       200 ~i~v~~~~~~~~~~~aiiDSGTt~~~lP~~~~~~l~~~~~~~----~------~~~g~~~~~C~~~~~~P~i~f~f-~g~  268 (329)
T 1dpj_A          200 GIGLGDEYAELESHGAAIDTGTSLITLPSGLAEMINAEIGAK----K------GWTGQYTLDCNTRDNLPDLIFNF-NGY  268 (329)
T ss_dssp             EEEETTEEEECSSCEEEECTTCSCEEECHHHHHHHHHHHTCE----E------CTTSSEEECGGGGGGCCCEEEEE-TTE
T ss_pred             eEEECCeEecCCCccEEeeCCCCcEECCHHHHHHHHHHhCCc----c------CCCCeEEEECCCCCcCCcEEEEE-CCE
Confidence            999999998766788999999999999999999999887532    1      11336677776666899999999 578


Q ss_pred             eeeeecceeEEeecCCcceEEE-EEEec-----CCCceeEcceeeeeeEEEEeCCCCEEEEeecC
Q 009271          400 SFVVRNHIFSFPENEGFTVFCL-TVMST-----DGDYGIIGQNFMMGHRIVFDRENLKLAWSHSK  458 (538)
Q Consensus       400 ~~~v~~~~y~~~~~~~~~~~Cl-~i~~~-----~~~~~IlG~~fl~~~yvVFD~e~~rIGfa~~~  458 (538)
                      ++.|++++|++...    ..|+ +|+..     .++.||||+.|||++|+|||++++|||||+++
T Consensus       269 ~~~i~~~~y~~~~~----~~C~~~~~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~igfA~~~  329 (329)
T 1dpj_A          269 NFTIGPYDYTLEVS----GSCISAITPMDFPEPVGPLAIVGDAFLRKYYSIYDLGNNAVGLAKAI  329 (329)
T ss_dssp             EEEECTTTSEEEET----TEEEECEEECCCCTTTCSEEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred             EEEECHHHhEecCC----CEEEEEEEecccCCCCCCcEEEChHHhcceEEEEECCCCEEEEEECC
Confidence            99999999999763    4896 67764     23589999999999999999999999999864


No 7  
>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A
Probab=100.00  E-value=1.3e-54  Score=453.33  Aligned_cols=302  Identities=24%  Similarity=0.353  Sum_probs=250.9

Q ss_pred             eeeccccccEEEEEEEecCCCeEEEEEEEcCCCceeEecC-CCCCCCCccccccccCCCCCCCCCCCCCCCccccCCCCC
Q 009271          100 HFFGNQFYWLHYTWIDIGTPNVSFLVALDAGSNLLWVPCQ-CIQCAPLSASYYTSLDRNLSEYDPSSSSSSKNVSCSHPL  178 (538)
Q Consensus       100 ~~~~~~~~~~yy~~v~iGtP~q~~~v~lDTGS~~~Wv~c~-C~~C~~~~~~~~~~~~~~~~~f~ps~SsT~~~~~C~~~~  178 (538)
                      +++.|+.+..||++|.||||||+|.|++||||+++||+|. |..|.          |..++.|+|++|+|++...     
T Consensus        48 ~~l~n~~d~~Y~~~i~iGTPpQ~~~v~~DTGSs~lWV~s~~C~~~~----------C~~~~~y~~~~SsT~~~~~-----  112 (370)
T 3psg_A           48 EPLENYLDTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLA----------CSDHNQFNPDDSSTFEATS-----  112 (370)
T ss_dssp             CTTGGGTTCCEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSGG----------GTTSCCBCGGGCTTCEEEE-----
T ss_pred             ecceeccCCEEEEEEEEcCCCCEEEEEEeCCCCccEEECCCCCCcc----------cCCCCCCCCccCcCcEECC-----
Confidence            5577899999999999999999999999999999999998 75431          1235799999999999764     


Q ss_pred             CCCCCCCCCCCCCCceeEecCCCCceEEEEEEEEEEEeccCCCCCCCccccccEEEEEEEeecCCCCCCCCCceEEeeCC
Q 009271          179 CKSRSSCKSLKDPCPYIADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGL  258 (538)
Q Consensus       179 C~~~~~C~~~~~~c~y~~~Y~dg~ss~~G~l~~D~v~l~~~~~~~~~~~~~~~~~fGc~~~~~g~~~~~~~~dGIlGLG~  258 (538)
                                   |.|.+.|++| + +.|.+++|+|+|++.        ...++.|||++.+.+.+......|||||||+
T Consensus       113 -------------~~~~i~Yg~G-s-~~G~~~~Dtv~ig~~--------~v~~~~Fg~a~~~~~~~~~~~~~dGIlGLg~  169 (370)
T 3psg_A          113 -------------QELSITYGTG-S-MTGILGYDTVQVGGI--------SDTNQIFGLSETEPGSFLYYAPFDGILGLAY  169 (370)
T ss_dssp             -------------EEEEEESSSC-E-EEEEEEEEEEEETTE--------EEEEEEEEEECSCCCGGGGGCSCSEEEECSC
T ss_pred             -------------cEEEEEeCCc-e-EEEEEEEEEEeeCCc--------ccCCeEEEEEEeecccccccCCccceeccCC
Confidence                         8899999996 4 899999999999874        4688999999988775544457899999998


Q ss_pred             CCC------ChHHHHHhcCCCC-CceEEeecCC--CCccEEeCCCCCCCc----eeeeeeecCCCCceEEEeEeEEEECC
Q 009271          259 GDV------SVPSLLAKAGLIQ-NSFSICFDEN--DSGSVFFGDQGPATQ----QSTSFLPIGEKYDAYFVGVESYCIGN  325 (538)
Q Consensus       259 ~~~------Sl~sqL~~~g~i~-~~FS~cl~~~--~~G~l~fG~~d~~~~----~~tplv~~~~~~~~y~V~l~~i~Vgg  325 (538)
                      +.+      +++++|.++|+|. ++||+||.++  ..|.|+|||+|+.++    .|+|+..    ..+|.|.+++|.||+
T Consensus       170 ~~~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~~~~G~l~fGg~D~~~y~g~l~~~pv~~----~~~w~v~l~~i~v~g  245 (370)
T 3psg_A          170 PSISASGATPVFDNLWDQGLVSQDLFSVYLSSNDDSGSVVLLGGIDSSYYTGSLNWVPVSV----EGYWQITLDSITMDG  245 (370)
T ss_dssp             GGGCGGGCCCHHHHHHHTTCSSSSEEEEEEC-----CEEEEETCCCGGGBSSCCEEEECSE----ETTEEEEECEEESSS
T ss_pred             ccccccCCCCHHHHHHHCCCCCCCEEEEEEccCCCCCeEEEEEeeChHhcCCcceeecccc----cceeEEEEeEEEECC
Confidence            775      4788999999997 9999999875  579999999999765    4888864    268999999999999


Q ss_pred             eEeec-CCceEEEcCCCccccccHHHHHHHHHHHHHhhcccccccccccccccccccccccccCccEEEEEcCCeeeeee
Q 009271          326 SCLTQ-SGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMRLIFSKNQSFVVR  404 (538)
Q Consensus       326 ~~l~~-~~~~aiiDSGTs~t~LP~~~y~~l~~~~~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~it~~f~gg~~~~v~  404 (538)
                      +.+.. ....+||||||++++||+++|++|.+++.+...     .     ..+|.++|.....+|+|+|+| ||.++.|+
T Consensus       246 ~~~~~~~~~~aiiDTGTs~~~lP~~~~~~i~~~i~a~~~-----~-----~g~~~v~C~~~~~lP~i~f~~-~g~~~~l~  314 (370)
T 3psg_A          246 ETIACSGGCQAIVDTGTSLLTGPTSAIANIQSDIGASEN-----S-----DGEMVISCSSIDSLPDIVFTI-DGVQYPLS  314 (370)
T ss_dssp             SEEECTTCEEEEECTTCCSEEEEHHHHHHHHHHTTCEEC-----T-----TCCEECCGGGGGGCCCEEEEE-TTEEEEEC
T ss_pred             EEEecCCCceEEEcCCCCcEECCHHHHHHHHHHhCCccc-----C-----CCcEEEECCCcccCCcEEEEE-CCEEEEEC
Confidence            88753 567899999999999999999999987753221     1     225666676667899999999 77999999


Q ss_pred             cceeEEeecCCcceEEE-EEEecC-----CCceeEcceeeeeeEEEEeCCCCEEEEeecC
Q 009271          405 NHIFSFPENEGFTVFCL-TVMSTD-----GDYGIIGQNFMMGHRIVFDRENLKLAWSHSK  458 (538)
Q Consensus       405 ~~~y~~~~~~~~~~~Cl-~i~~~~-----~~~~IlG~~fl~~~yvVFD~e~~rIGfa~~~  458 (538)
                      +++|++. .   ...|+ +|+..+     ++.||||+.||+++|+|||++|+|||||++.
T Consensus       315 ~~~yi~~-~---~~~C~~~~~~~~~~~~~~~~~ILG~~Fl~~~y~vfD~~~~riGfA~a~  370 (370)
T 3psg_A          315 PSAYILQ-D---DDSCTSGFEGMDVPTSSGELWILGDVFIRQYYTVFDRANNKVGLAPVA  370 (370)
T ss_dssp             HHHHEEE-C---SSCEEESEEEECCCTTSCCEEEECHHHHTTEEEEEETTTTEEEEEEBC
T ss_pred             HHHhccc-C---CCEEEEEEEeCCCCCCCCCcEEeChHHhcceEEEEECCCCEEEEEEcC
Confidence            9999998 3   24695 676643     2369999999999999999999999999873


No 8  
>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2
Probab=100.00  E-value=3.6e-54  Score=442.36  Aligned_cols=299  Identities=21%  Similarity=0.359  Sum_probs=249.2

Q ss_pred             eeeccccccEEEEEEEecCCCeEEEEEEEcCCCceeEecC-CC--CCCCCccccccccCCCCCCCCCCCCCCCccccCCC
Q 009271          100 HFFGNQFYWLHYTWIDIGTPNVSFLVALDAGSNLLWVPCQ-CI--QCAPLSASYYTSLDRNLSEYDPSSSSSSKNVSCSH  176 (538)
Q Consensus       100 ~~~~~~~~~~yy~~v~iGtP~q~~~v~lDTGS~~~Wv~c~-C~--~C~~~~~~~~~~~~~~~~~f~ps~SsT~~~~~C~~  176 (538)
                      +++.|+.+..||++|.||||||+|.|++||||+++||+|. |.  .|..            ++.|+|++|+|++...   
T Consensus         4 ~~l~n~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~C~~------------~~~y~~~~SsT~~~~~---   68 (324)
T 1am5_A            4 EQMKNEADTEYYGVISIGTPPESFKVIFDTGSSNLWVSSSHCSAQACSN------------HNKFKPRQSSTYVETG---   68 (324)
T ss_dssp             EEEEEETTTEEEEEEEETTTTEEEEEEEETTCCCEEECBTTCCSHHHHT------------SCCBCGGGCTTCEEEE---
T ss_pred             eeeecCCCCEEEEEEEECCCCeEEEEEEeCCCcceEEecCCCCcccccC------------CCcCCCccCCCeEeCC---
Confidence            4566778899999999999999999999999999999997 75  3543            3689999999999753   


Q ss_pred             CCCCCCCCCCCCCCCCceeEecCCCCceEEEEEEEEEEEeccCCCCCCCccccccEEEEEEEeecCCCCCCCCCceEEee
Q 009271          177 PLCKSRSSCKSLKDPCPYIADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGL  256 (538)
Q Consensus       177 ~~C~~~~~C~~~~~~c~y~~~Y~dg~ss~~G~l~~D~v~l~~~~~~~~~~~~~~~~~fGc~~~~~g~~~~~~~~dGIlGL  256 (538)
                                     |.|.+.|++| + +.|.+++|+|+|++.        ...++.|||++.+.+.+......||||||
T Consensus        69 ---------------~~~~i~Yg~G-s-~~G~~~~D~v~~g~~--------~~~~~~fg~~~~~~~~~~~~~~~~GilGL  123 (324)
T 1am5_A           69 ---------------KTVDLTYGTG-G-MRGILGQDTVSVGGG--------SDPNQELGESQTEPGPFQAAAPFDGILGL  123 (324)
T ss_dssp             ---------------EEEEEECSSC-E-EEEEEEEEEEESSSS--------CEEEEEEEEEEECCSTTTTTCSSSEEEEC
T ss_pred             ---------------cEEEEEECCC-C-eEEEEEECceeECCc--------EEcccEEEEEEecccccccCCCCceEEec
Confidence                           8999999996 3 599999999999864        36789999999987765444467999999


Q ss_pred             CCCCC------ChHHHHHhcCCCC-CceEEeecCC--CCccEEeCCCCCCCc----eeeeeeecCCCCceEEEeEeEEEE
Q 009271          257 GLGDV------SVPSLLAKAGLIQ-NSFSICFDEN--DSGSVFFGDQGPATQ----QSTSFLPIGEKYDAYFVGVESYCI  323 (538)
Q Consensus       257 G~~~~------Sl~sqL~~~g~i~-~~FS~cl~~~--~~G~l~fG~~d~~~~----~~tplv~~~~~~~~y~V~l~~i~V  323 (538)
                      |+..+      +++++|+++|+|. ++||+||.++  ..|.|+||++|+.++    .|+|++.    ..+|.|.+++|.|
T Consensus       124 g~~~~s~~~~~~~~~~l~~qg~i~~~~FS~~l~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~~~v~l~~i~v  199 (324)
T 1am5_A          124 AYPSIAAAGAVPVFDNMGSQSLVEKDLFSFYLSGGGANGSEVMLGGVDNSHYTGSIHWIPVTA----EKYWQVALDGITV  199 (324)
T ss_dssp             SCGGGCGGGCCCHHHHHHHTTCSSSSEEEEECCSTTCSCEEEEESSCCGGGBCSCCEEEEEEE----ETTEEEEECEEEE
T ss_pred             CCccccccCCCchHHhHHhcCCCCCCEEEEEecCCCCCCcEEEECccCHHHcCCceEEEecCC----CcEEEEEEeEEEE
Confidence            99865      4788999999996 9999999875  479999999998754    5999875    2689999999999


Q ss_pred             CCeEeecCCceEEEcCCCccccccHHHHHHHHHHHHHhhcccccccccccccccccccccccccCccEEEEEcCCeeeee
Q 009271          324 GNSCLTQSGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMRLIFSKNQSFVV  403 (538)
Q Consensus       324 gg~~l~~~~~~aiiDSGTs~t~LP~~~y~~l~~~~~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~it~~f~gg~~~~v  403 (538)
                      |++.+......+||||||++++||+++|++|.+++.+. .     ..+.....|+.     ...+|+|+|+| ||.++.|
T Consensus       200 ~~~~~~~~~~~aiiDSGTt~~~lp~~~~~~l~~~~~~~-~-----~~g~~~~~C~~-----~~~~P~i~f~f-~g~~~~i  267 (324)
T 1am5_A          200 NGQTAACEGCQAIVDTGTSKIVAPVSALANIMKDIGAS-E-----NQGEMMGNCAS-----VQSLPDITFTI-NGVKQPL  267 (324)
T ss_dssp             TTEECCCCCEEEEECTTCSSEEECTTTHHHHHHHHTCE-E-----CCCCEECCTTS-----SSSSCCEEEEE-TTEEEEE
T ss_pred             CCceeeccCceEEEecCCccEECCHHHHHHHHHHhCCc-c-----cCCcEEEeCCC-----cccCCcEEEEE-CCEEEEE
Confidence            99886433478999999999999999999999888654 1     11112234543     45789999999 6799999


Q ss_pred             ecceeEEeecCCcceEEE-EEEecC-----CCceeEcceeeeeeEEEEeCCCCEEEEeecC
Q 009271          404 RNHIFSFPENEGFTVFCL-TVMSTD-----GDYGIIGQNFMMGHRIVFDRENLKLAWSHSK  458 (538)
Q Consensus       404 ~~~~y~~~~~~~~~~~Cl-~i~~~~-----~~~~IlG~~fl~~~yvVFD~e~~rIGfa~~~  458 (538)
                      ++++|++..    ...|+ +|+..+     ++.||||+.||+++|+|||++++|||||+++
T Consensus       268 ~~~~y~~~~----~~~C~~~~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~igfa~a~  324 (324)
T 1am5_A          268 PPSAYIEGD----QAFCTSGLGSSGVPSNTSELWIFGDVFLRNYYTIYDRTNNKVGFAPAA  324 (324)
T ss_dssp             CHHHHEEES----SSCEEECEEECCSCCSSSCEEEECHHHHHHEEEEEETTTTEEEEEEBC
T ss_pred             CHHHhcccC----CCeEEEEEEECccCCCCCCcEEEChHHhccEEEEEECCCCEEEEEECC
Confidence            999999876    35796 787653     3589999999999999999999999999874


No 9  
>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2
Probab=100.00  E-value=2.7e-54  Score=445.15  Aligned_cols=306  Identities=20%  Similarity=0.307  Sum_probs=246.1

Q ss_pred             eeeccccccEEEEEEEecCCCeEEEEEEEcCCCceeEecCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCCCCC
Q 009271          100 HFFGNQFYWLHYTWIDIGTPNVSFLVALDAGSNLLWVPCQCIQCAPLSASYYTSLDRNLSEYDPSSSSSSKNVSCSHPLC  179 (538)
Q Consensus       100 ~~~~~~~~~~yy~~v~iGtP~q~~~v~lDTGS~~~Wv~c~C~~C~~~~~~~~~~~~~~~~~f~ps~SsT~~~~~C~~~~C  179 (538)
                      +++.|. +..||++|.||||+|+|.|++||||+++||+|.|..|...........|..++.|+|++|+|++...      
T Consensus         5 ~~l~~~-~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~~C~~~~~~~~~~~C~~~~~y~~~~SsT~~~~~------   77 (334)
T 1j71_A            5 TTLINE-GPSYAADIVVGSNQQKQTVVIDTGSSDLWVVDTDAECQVTYSGQTNNFCKQEGTFDPSSSSSAQNLN------   77 (334)
T ss_dssp             EEEEEC-SSSEEEEEEETTTTEEEEEEEETTCCCEEEEEEEEEECCCSTTCCTTGGGSSCCBCGGGCTTCEEEE------
T ss_pred             EEEecC-CcEEEEEEEEcCCCcEEEEEEcCCCCCEEEecCCCCCcCcccccccccccCCCcCCcccCCCcccCC------
Confidence            344443 6789999999999999999999999999999763233221000001123356799999999999764      


Q ss_pred             CCCCCCCCCCCCCceeEecCCCCceEEEEEEEEEEEeccCCCCCCCccccccEEEEEEEeecCCCCCCCCCceEEeeCCC
Q 009271          180 KSRSSCKSLKDPCPYIADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLG  259 (538)
Q Consensus       180 ~~~~~C~~~~~~c~y~~~Y~dg~ss~~G~l~~D~v~l~~~~~~~~~~~~~~~~~fGc~~~~~g~~~~~~~~dGIlGLG~~  259 (538)
                                  |.|.+.|++| +.+.|.+++|+|+|++.        ...++.|||++...       ..+||||||+.
T Consensus        78 ------------~~~~i~Yg~G-s~~~G~~~~D~v~~g~~--------~~~~~~fg~~~~~~-------~~~GilGLg~~  129 (334)
T 1j71_A           78 ------------QDFSIEYGDL-TSSQGSFYKDTVGFGGI--------SIKNQQFADVTTTS-------VDQGIMGIGFT  129 (334)
T ss_dssp             ------------EEEEEEBTTS-CEEEEEEEEEEEEETTE--------EEEEEEEEEEEEES-------SSSCEEECSCG
T ss_pred             ------------CceEEEECCC-CEEEEEEEEEEEEECCE--------EEccEEEEEEEecC-------CCccEEEEcCC
Confidence                        8999999996 67899999999999864        36899999998763       45899999998


Q ss_pred             CC--------ChHHHHHhcCCCC-CceEEeecC--CCCccEEeCCCCCCCce----eeeeeecCCCCceEEEeEeEEEEC
Q 009271          260 DV--------SVPSLLAKAGLIQ-NSFSICFDE--NDSGSVFFGDQGPATQQ----STSFLPIGEKYDAYFVGVESYCIG  324 (538)
Q Consensus       260 ~~--------Sl~sqL~~~g~i~-~~FS~cl~~--~~~G~l~fG~~d~~~~~----~tplv~~~~~~~~y~V~l~~i~Vg  324 (538)
                      .+        +++.+|+++|+|+ ++||+||.+  ...|.|+||++|+.++.    ++|++..    .+|.|.|++|.||
T Consensus       130 ~~~~~~~~~~~~~~~L~~qg~i~~~~Fs~~l~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~----~~~~v~l~~i~v~  205 (334)
T 1j71_A          130 ADEAGYNLYDNVPVTLKKQGIINKNAYSLYLNSEDASTGKIIFGGVDNAKYTGTLTALPVTSS----VELRVHLGSINFD  205 (334)
T ss_dssp             GGSSTTCCCCCHHHHHHHTTSCSSSEEEEECCCTTCSEEEEEETEEETTSEEEEEEEEECCCS----SSCEEEEEEEEET
T ss_pred             cccCccccCCcHHHHHHHCCCCCccEEEEEeCCCCCCCeEEEEeeechHHccCceEEEEccCC----CeEEEEEeEEEEC
Confidence            64        7899999999996 999999986  35799999999998754    7887542    5899999999999


Q ss_pred             CeEeecCCceEEEcCCCccccccHHHHHHHHHHHHHhhcccccccccccc-cccccccccccccCccEEEEEcCCeeeee
Q 009271          325 NSCLTQSGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQGNSW-KYCYNASSEEMLKVPDMRLIFSKNQSFVV  403 (538)
Q Consensus       325 g~~l~~~~~~aiiDSGTs~t~LP~~~y~~l~~~~~~~~~~~~~~~~~~~~-~~Cy~~~~~~~~~~P~it~~f~gg~~~~v  403 (538)
                      ++.+. ....+||||||++++||+++|++|.+++.++..    ....... ..|+        .+|.|+|+|.||.++.|
T Consensus       206 g~~~~-~~~~~iiDSGTt~~~lP~~~~~~l~~~~~~~~~----~~~~~~~~~~C~--------~~p~i~f~f~~g~~~~i  272 (334)
T 1j71_A          206 GTSVS-TNADVVLDSGTTITYFSQSTADKFARIVGATWD----SRNEIYRLPSCD--------LSGDAVFNFDQGVKITV  272 (334)
T ss_dssp             TEEEE-EEEEEEECTTCSSEEECHHHHHHHHHHHTCEEE----TTTTEEECSSSC--------CCSEEEEEESTTCEEEE
T ss_pred             CEecc-CCccEEEeCCCCcEecCHHHHHHHHHHcCCccc----CCCceEEEEcCC--------CCCceEEEEcCCcEEEE
Confidence            99887 456799999999999999999999998876542    1111111 3454        26999999987899999


Q ss_pred             ecceeEEeecCCcceEEE-EEEecCCCceeEcceeeeeeEEEEeCCCCEEEEeecCCCc
Q 009271          404 RNHIFSFPENEGFTVFCL-TVMSTDGDYGIIGQNFMMGHRIVFDRENLKLAWSHSKCEE  461 (538)
Q Consensus       404 ~~~~y~~~~~~~~~~~Cl-~i~~~~~~~~IlG~~fl~~~yvVFD~e~~rIGfa~~~C~~  461 (538)
                      ++++|++...+  +..|+ +|+..  +.||||+.|||++|+|||++++|||||+++|.+
T Consensus       273 ~~~~y~~~~~~--~~~C~~~i~~~--~~~iLG~~fl~~~y~vfD~~~~~igfA~~~~~~  327 (334)
T 1j71_A          273 PLSELILKDSD--SSICYFGISRN--DANILGDNFLRRAYIVYDLDDKTISLAQVKYTS  327 (334)
T ss_dssp             EGGGGEEECSS--SSCEEESEEEC--TTCEECHHHHTTEEEEEETTTTEEEEEEECCCS
T ss_pred             CHHHheeecCC--CCeeEEEEeEC--CCcEEChHhhccEEEEEECCCCEEEEEecCCCC
Confidence            99999998644  33596 45554  369999999999999999999999999999975


No 10 
>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans}
Probab=100.00  E-value=3.4e-54  Score=445.79  Aligned_cols=308  Identities=19%  Similarity=0.325  Sum_probs=247.3

Q ss_pred             eeeccccccEEEEEEEecCCCeEEEEEEEcCCCceeEecC---CCCCCCCccccccccCCCCCCCCCCCCCCCccccCCC
Q 009271          100 HFFGNQFYWLHYTWIDIGTPNVSFLVALDAGSNLLWVPCQ---CIQCAPLSASYYTSLDRNLSEYDPSSSSSSKNVSCSH  176 (538)
Q Consensus       100 ~~~~~~~~~~yy~~v~iGtP~q~~~v~lDTGS~~~Wv~c~---C~~C~~~~~~~~~~~~~~~~~f~ps~SsT~~~~~C~~  176 (538)
                      +++.| .+..|+++|.||||+|+|.|+|||||+++||+|.   |..|....   ....|..++.|+|++|+|++...   
T Consensus         5 ~~l~~-~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~~C~~~~~~~---~~~~C~~~~~y~~~~SsT~~~~~---   77 (342)
T 2qzx_A            5 VTLHN-EAITYTADITVGSDNQKLNVIVDTGSSDLWIPDSNVICIPKWRGD---KGDFCKSAGSYSPASSRTSQNLN---   77 (342)
T ss_dssp             EEEEE-CSSCEEEEEEETTTTEEEEEEEETTCCCEEEEEEEEEECCCSSSC---CTTGGGTTCCBCGGGCTTCEEEE---
T ss_pred             EEEec-CCeEEEEEEEECCCCcEEEEEEeCCCCCeEEecCCCCccCccccC---ccccccCCCcCCcccCCCcccCC---
Confidence            34434 4678999999999999999999999999999976   54332110   01123356799999999999764   


Q ss_pred             CCCCCCCCCCCCCCCCceeEecCCCCceEEEEEEEEEEEeccCCCCCCCccccccEEEEEEEeecCCCCCCCCCceEEee
Q 009271          177 PLCKSRSSCKSLKDPCPYIADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGL  256 (538)
Q Consensus       177 ~~C~~~~~C~~~~~~c~y~~~Y~dg~ss~~G~l~~D~v~l~~~~~~~~~~~~~~~~~fGc~~~~~g~~~~~~~~dGIlGL  256 (538)
                                     |.|.+.|++| +.+.|.+++|+|+|++.        ...++.|||++...       ..+|||||
T Consensus        78 ---------------~~~~i~Yg~G-s~~~G~~~~D~v~~g~~--------~v~~~~fg~~~~~~-------~~~GilGL  126 (342)
T 2qzx_A           78 ---------------TRFDIKYGDG-SYAKGKLYKDTVGIGGV--------SVRDQLFANVWSTS-------ARKGILGI  126 (342)
T ss_dssp             ---------------EEEEEECTTS-CEEEEEEEEEEEEETTE--------EEEEEEEEEEEEEC-------SSSCEEEC
T ss_pred             ---------------CcEEEEeCCC-CeEEEEEEEEEEEECCE--------EecceEEEEEEecC-------CCcCEEEE
Confidence                           8999999996 77899999999999864        36889999998763       45899999


Q ss_pred             CCCCC--------ChHHHHHhcCCCC-CceEEeecCC--CCccEEeCCCCCCCc----eeeeeeecCCCCceEEEeEeEE
Q 009271          257 GLGDV--------SVPSLLAKAGLIQ-NSFSICFDEN--DSGSVFFGDQGPATQ----QSTSFLPIGEKYDAYFVGVESY  321 (538)
Q Consensus       257 G~~~~--------Sl~sqL~~~g~i~-~~FS~cl~~~--~~G~l~fG~~d~~~~----~~tplv~~~~~~~~y~V~l~~i  321 (538)
                      |+..+        +++.+|+++|+|+ ++||+||.+.  ..|.|+||++|+.++    .++|++..    .+|.|.|++|
T Consensus       127 g~~~~~~~~~~~~~~~~~L~~qg~i~~~~Fs~~l~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~----~~~~v~l~~i  202 (342)
T 2qzx_A          127 GFQSGEATEFDYDNLPISLRNQGIIGKAAYSLYLNSAEASTGQIIFGGIDKAKYSGSLVDLPITSE----KKLTVGLRSV  202 (342)
T ss_dssp             SCGGGCSSSSCCCCHHHHHHHTTSSSSSEEEEECCCTTCSEEEEEETEEETTSBSSCCEEEECCCS----SSCEEEEEEE
T ss_pred             ccccccCCCccCccHHHHHHHCCCcCccEEEEEeCCCCCCCeEEEECccchhhEecceEEEeccCC----ceEEEEEeEE
Confidence            99764        7899999999996 9999999863  579999999998765    48888642    5899999999


Q ss_pred             EECCeEeecCCceEEEcCCCccccccHHHHHHHHHHHHHhhcccccccccccccccccccccccccCccEEEEEcCCeee
Q 009271          322 CIGNSCLTQSGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMRLIFSKNQSF  401 (538)
Q Consensus       322 ~Vgg~~l~~~~~~aiiDSGTs~t~LP~~~y~~l~~~~~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~it~~f~gg~~~  401 (538)
                      .||++.+. ....+||||||++++||+++|++|.+++.+.....+.  .    ...|..+|.   .+|.|+|+|.||.++
T Consensus       203 ~v~g~~~~-~~~~aiiDSGTt~~~lP~~~~~~l~~~~~~~~~~~~~--~----~~~~~~~C~---~~p~i~f~f~~g~~~  272 (342)
T 2qzx_A          203 NVRGRNVD-ANTNVLLDSGTTISYFTRSIVRNILYAIGAQMKFDSA--G----NKVYVADCK---TSGTIDFQFGNNLKI  272 (342)
T ss_dssp             EETTEEEE-EEEEEEECTTCSSEEECHHHHHHHHHHHTCEEEECTT--S----CEEEEECTT---CCCEEEEEETTTEEE
T ss_pred             EECCEecC-CCcCEEEeCCCCCEEcCHHHHHHHHHHhCCeeeeccC--C----CcEEEEECC---CCCcEEEEECCCcEE
Confidence            99999887 4567999999999999999999999988765432110  1    113334443   269999999878999


Q ss_pred             eeecceeEEeec---CCcceEEEE-EEecCCCceeEcceeeeeeEEEEeCCCCEEEEeecCCCc
Q 009271          402 VVRNHIFSFPEN---EGFTVFCLT-VMSTDGDYGIIGQNFMMGHRIVFDRENLKLAWSHSKCEE  461 (538)
Q Consensus       402 ~v~~~~y~~~~~---~~~~~~Cl~-i~~~~~~~~IlG~~fl~~~yvVFD~e~~rIGfa~~~C~~  461 (538)
                      .|++++|++...   ......|+. +...  +.||||+.|||++|+|||++++|||||+++|..
T Consensus       273 ~i~~~~~~~~~~~~~~~~~~~C~~~i~~~--~~~iLG~~fl~~~y~vfD~~~~~igfA~~~~~~  334 (342)
T 2qzx_A          273 SVPVSEFLFQTYYTSGKPFPKCEVRIRES--EDNILGDNFLRSAYVVYNLDDKKISMAPVKYTS  334 (342)
T ss_dssp             EEEGGGGEECCBCTTSCBCSSEEESEEEC--SSCEECHHHHTTEEEEEETTTTEEEEEEBCCCS
T ss_pred             EEcHHHhcccccccCCCCCCccEEEEecC--CCcEeChHhhhcEEEEEECCCCEEEEEeeCCCC
Confidence            999999998742   111468965 5544  369999999999999999999999999999975


No 11 
>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A
Probab=100.00  E-value=6.8e-54  Score=440.57  Aligned_cols=297  Identities=22%  Similarity=0.396  Sum_probs=246.5

Q ss_pred             cccccEEEEEEEecCCCeEEEEEEEcCCCceeEecC-CCCCCCCccccccccCCCCCCCCCCCCCCCccccCCCCCCCCC
Q 009271          104 NQFYWLHYTWIDIGTPNVSFLVALDAGSNLLWVPCQ-CIQCAPLSASYYTSLDRNLSEYDPSSSSSSKNVSCSHPLCKSR  182 (538)
Q Consensus       104 ~~~~~~yy~~v~iGtP~q~~~v~lDTGS~~~Wv~c~-C~~C~~~~~~~~~~~~~~~~~f~ps~SsT~~~~~C~~~~C~~~  182 (538)
                      +..+..||++|.||||+|+|.|++||||+++||+|. |..| .+          ..+.|+|++|+|++..          
T Consensus        11 ~~~~~~Y~~~i~iGTP~q~~~v~~DTGSs~lWv~~~~c~~c-~~----------~~~~y~~~~SsT~~~~----------   69 (325)
T 2apr_A           11 YGNDIEYYGQVTIGTPGKKFNLDFDTGSSDLWIASTLCTNC-GS----------GQTKYDPNQSSTYQAD----------   69 (325)
T ss_dssp             ETTTTEEEEEEEETTTTEEEEEEEETTCCCCEEEBTTCSSC-CT----------TSCCBCGGGCTTCEEE----------
T ss_pred             cCCCCEEEEEEEECCCCeEEEEEEcCCCCCEEEccCCCchH-hc----------CCCCCCcccCCCeeeC----------
Confidence            456789999999999999999999999999999998 9888 22          3479999999999964          


Q ss_pred             CCCCCCCCCCceeEecCCCCceEEEEEEEEEEEeccCCCCCCCccccccEEEEEEEeecCCCCCCCCCceEEeeCCCCC-
Q 009271          183 SSCKSLKDPCPYIADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDV-  261 (538)
Q Consensus       183 ~~C~~~~~~c~y~~~Y~dg~ss~~G~l~~D~v~l~~~~~~~~~~~~~~~~~fGc~~~~~g~~~~~~~~dGIlGLG~~~~-  261 (538)
                              .|.|.+.|++| +.+.|.+++|+|+|++.        ...++.|||++..++.|... ..|||||||+..+ 
T Consensus        70 --------~~~~~i~Yg~G-s~~~G~~~~D~v~~g~~--------~v~~~~fg~~~~~~~~f~~~-~~~GilGLg~~~~s  131 (325)
T 2apr_A           70 --------GRTWSISYGDG-SSASGILAKDNVNLGGL--------LIKGQTIELAKREAASFASG-PNDGLLGLGFDTIT  131 (325)
T ss_dssp             --------EEEEEEECTTS-CEEEEEEEEEEEEETTE--------EEEEEEEEEEEEECHHHHTS-SCSEEEECSCGGGC
T ss_pred             --------CCEEEEEECCC-CCEEEEEEEEEEEECCE--------EECcEEEEEEeccCcccccC-CCceEEEeCCcccc
Confidence                    38999999996 67899999999999864        35789999999887766443 4799999998765 


Q ss_pred             ------ChHHHHHhcCCCC-CceEEeecC---CCCccEEeCCCCCCCc----eeeeeeecCCCCceEEEeEeEEEECCeE
Q 009271          262 ------SVPSLLAKAGLIQ-NSFSICFDE---NDSGSVFFGDQGPATQ----QSTSFLPIGEKYDAYFVGVESYCIGNSC  327 (538)
Q Consensus       262 ------Sl~sqL~~~g~i~-~~FS~cl~~---~~~G~l~fG~~d~~~~----~~tplv~~~~~~~~y~V~l~~i~Vgg~~  327 (538)
                            +++++|+++|+|. ++||+||.+   ...|.|+||++|+.++    .|+|++..   ..+|.|.+++|.||+ .
T Consensus       132 ~~~~~~~~~~~l~~qg~i~~~~FS~~l~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~---~~~~~v~l~~i~vg~-~  207 (325)
T 2apr_A          132 TVRGVKTPMDNLISQGLISRPIFGVYLGKAKNGGGGEYIFGGYDSTKFKGSLTTVPIDNS---RGWWGITVDRATVGT-S  207 (325)
T ss_dssp             SSTTCCCHHHHHHHTTSCSSSEEEEEECCGGGTCCEEEEETCCCGGGBCSCCEEEECBCT---TSSCEEEECEEEETT-E
T ss_pred             cccCCCCHHHHHHhcCCCCCceEEEEecCCCCCCCCEEEEccCCchhccCceEEEEccCC---CCEEEEEEeEEEECC-E
Confidence                  4789999999886 999999953   4679999999998764    48888532   368999999999999 4


Q ss_pred             eecCCceEEEcCCCccccccHHHHHHHHHHHHHhhcccccccccccccccccccccccccCccEEEEEcCCeeeeeecce
Q 009271          328 LTQSGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMRLIFSKNQSFVVRNHI  407 (538)
Q Consensus       328 l~~~~~~aiiDSGTs~t~LP~~~y~~l~~~~~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~it~~f~gg~~~~v~~~~  407 (538)
                      +....+.+||||||++++||+++|++|++++.+++...     ......|+.      ..+|+|+|+|.| .++.|++++
T Consensus       208 ~~~~~~~~iiDSGTs~~~lP~~~~~~~~~~~~~~~~~~-----g~~~~~C~~------~~~p~i~f~f~g-~~~~ip~~~  275 (325)
T 2apr_A          208 TVASSFDGILDTGTTLLILPNNIAASVARAYGASDNGD-----GTYTISCDT------SAFKPLVFSING-ASFQVSPDS  275 (325)
T ss_dssp             EEECCEEEEECTTCSSEEEEHHHHHHHHHHHTCEECSS-----SCEEECSCG------GGCCCEEEEETT-EEEEECGGG
T ss_pred             ecCCCceEEEecCCccEECCHHHHHHHHHHHhcccCCC-----CeEEEECCC------CCCCcEEEEECC-EEEEECHHH
Confidence            55467889999999999999999999999987765432     111224552      248999999955 599999999


Q ss_pred             eEEeecCCcceEEEE-EEecCCCceeEcceeeeeeEEEEeCCCCEEEEeecC
Q 009271          408 FSFPENEGFTVFCLT-VMSTDGDYGIIGQNFMMGHRIVFDRENLKLAWSHSK  458 (538)
Q Consensus       408 y~~~~~~~~~~~Cl~-i~~~~~~~~IlG~~fl~~~yvVFD~e~~rIGfa~~~  458 (538)
                      |++...   +..|++ |+..+.+.||||+.|||++|+|||++++|||||+..
T Consensus       276 ~~~~~~---~~~C~~~i~~~~~~~~iLG~~fl~~~y~vfD~~~~~igfA~~~  324 (325)
T 2apr_A          276 LVFEEF---QGQCIAGFGYGNWGFAIIGDTFLKNNYVVFNQGVPEVQIAPVA  324 (325)
T ss_dssp             GEEEEE---TTEEEESEEEESSSSEEECHHHHTTEEEEEETTTTEEEEEEBC
T ss_pred             EEEcCC---CCeEEEEEEcCCCCCEEECHHHhcceEEEEECCCCEEEEEecC
Confidence            988654   468975 565555689999999999999999999999999863


No 12 
>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A
Probab=100.00  E-value=2.2e-54  Score=443.75  Aligned_cols=300  Identities=21%  Similarity=0.360  Sum_probs=247.0

Q ss_pred             eeeccccccEEEEEEEecCCCeEEEEEEEcCCCceeEecC-C--CCCCCCccccccccCCCCCCCCCCCCCCCccccCCC
Q 009271          100 HFFGNQFYWLHYTWIDIGTPNVSFLVALDAGSNLLWVPCQ-C--IQCAPLSASYYTSLDRNLSEYDPSSSSSSKNVSCSH  176 (538)
Q Consensus       100 ~~~~~~~~~~yy~~v~iGtP~q~~~v~lDTGS~~~Wv~c~-C--~~C~~~~~~~~~~~~~~~~~f~ps~SsT~~~~~C~~  176 (538)
                      +++.|+.+..||++|.||||||+|.|++||||+++||+|. |  ..|..            ++.|+|++|+|++...   
T Consensus         6 ~~l~n~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~C~~------------~~~y~~~~SsT~~~~~---   70 (323)
T 3cms_A            6 VPLTNYLDSQYFGKIYLGTPPQEFTVLFDTGSSDFWVPSIYCKSNACKN------------HQRFDPRKSSTFQNLG---   70 (323)
T ss_dssp             EEEEEETTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSHHHHT------------SCCBCGGGCTTCEEEE---
T ss_pred             eeeEeccCCEEEEEEEECCCCeEEEEEEeCCccceEEcCCCCCcccccC------------CCCCCCccCCCeEECC---
Confidence            5566888899999999999999999999999999999998 7  44643            3689999999999763   


Q ss_pred             CCCCCCCCCCCCCCCCceeEecCCCCceEEEEEEEEEEEeccCCCCCCCccccccEEEEEEEeecCCCCCCCCCceEEee
Q 009271          177 PLCKSRSSCKSLKDPCPYIADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGL  256 (538)
Q Consensus       177 ~~C~~~~~C~~~~~~c~y~~~Y~dg~ss~~G~l~~D~v~l~~~~~~~~~~~~~~~~~fGc~~~~~g~~~~~~~~dGIlGL  256 (538)
                                     |.|.+.|++| + +.|.+++|+|+|++.        ...++.|||++.+.+..+.....||||||
T Consensus        71 ---------------~~~~i~Yg~G-s-~~G~~~~D~v~ig~~--------~~~~~~fg~~~~~~~~~~~~~~~~GilGL  125 (323)
T 3cms_A           71 ---------------KPLSIHYGTG-S-MQGILGYDTVTVSNI--------VDIQQTVGLSTQEPGDFFTYAEFDGILGM  125 (323)
T ss_dssp             ---------------EEEEEEETTE-E-EEEEEEEEEEEETTE--------EEEEEEEEEEEECCSHHHHHSSCSEEEEC
T ss_pred             ---------------cEEEEEeCCC-C-eEEEEEEEEEEECCe--------EEeccEEEEEEecccccccccCCceEEec
Confidence                           8999999996 4 799999999999864        36789999999887632222256999999


Q ss_pred             CCCCC------ChHHHHHhcCCCC-CceEEeecCC-CCccEEeCCCCCCCc----eeeeeeecCCCCceEEEeEeEEEEC
Q 009271          257 GLGDV------SVPSLLAKAGLIQ-NSFSICFDEN-DSGSVFFGDQGPATQ----QSTSFLPIGEKYDAYFVGVESYCIG  324 (538)
Q Consensus       257 G~~~~------Sl~sqL~~~g~i~-~~FS~cl~~~-~~G~l~fG~~d~~~~----~~tplv~~~~~~~~y~V~l~~i~Vg  324 (538)
                      |+..+      +++++|+++|+|. ++||+||.++ ..|.|+||++|+.++    .|+|++.    ..+|.|.+++|.||
T Consensus       126 g~~~~s~~~~~~~~~~l~~q~~i~~~~FS~~l~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~~~v~l~~i~v~  201 (323)
T 3cms_A          126 AYPSLASEYSIPVFDNMMNRHLVAQDLFSVYMDRNGQESMLTLGAIDPSYYTGSLHWVPVTV----QQYWQFTVDSVTIS  201 (323)
T ss_dssp             SCGGGSCTTCCCHHHHHHHTTCSSSSEEEEECCTTSSCEEEEESCCCGGGEEEEEEEEECSS----BTTBEEEEEEEEET
T ss_pred             CcchhhccCCCCHHHHHHHCCCCCCCEEEEEECCCCCCEEEEECCCChhhccCceEEEECcc----CCeEEEEEeeEEEC
Confidence            98764      5788999999996 9999999875 459999999998865    3788853    36899999999999


Q ss_pred             CeEee-cCCceEEEcCCCccccccHHHHHHHHHHHHHhhcccccccccccccccccccccccccCccEEEEEcCCeeeee
Q 009271          325 NSCLT-QSGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMRLIFSKNQSFVV  403 (538)
Q Consensus       325 g~~l~-~~~~~aiiDSGTs~t~LP~~~y~~l~~~~~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~it~~f~gg~~~~v  403 (538)
                      ++.+. .....+||||||++++||+++|++|.+++.+...     ...     .|..+|.....+|+|+|+| ||.++.|
T Consensus       202 ~~~~~~~~~~~aiiDSGTt~~~lP~~~~~~l~~~~~~~~~-----~~g-----~~~~~C~~~~~~P~i~f~f-~g~~~~i  270 (323)
T 3cms_A          202 GVVVACEGGCQAILDTGTSKLVGPSSDILNIQQAIGATQN-----QYG-----EFDIDCDNLSYMPTVVFEI-NGKMYPL  270 (323)
T ss_dssp             TEEEESTTCEEEEECTTCCSEEECHHHHHHHHHHHTCEEE-----TTT-----EEEECTTCTTTSCCEEEEE-TTEEEEE
T ss_pred             CEEeecCCCcEEEEecCCccEeCCHHHHHHHHHHhCCeec-----CCC-----cEEEECCCCccCceEEEEE-CCEEEEE
Confidence            99875 3567899999999999999999999988754211     111     2233343345789999999 6799999


Q ss_pred             ecceeEEeecCCcceEEE-EEEecC-CCceeEcceeeeeeEEEEeCCCCEEEEeecC
Q 009271          404 RNHIFSFPENEGFTVFCL-TVMSTD-GDYGIIGQNFMMGHRIVFDRENLKLAWSHSK  458 (538)
Q Consensus       404 ~~~~y~~~~~~~~~~~Cl-~i~~~~-~~~~IlG~~fl~~~yvVFD~e~~rIGfa~~~  458 (538)
                      ++++|++..    ...|+ +|+..+ ++.||||+.||+++|+|||++++|||||+++
T Consensus       271 ~~~~y~~~~----~~~C~~~i~~~~~~~~~iLG~~fl~~~y~vfD~~~~~igfA~~~  323 (323)
T 3cms_A          271 TPSAYTSQD----QGFCTSGFQSENHSQKWILGDVFIREYYSVFDRANNLVGLAKAI  323 (323)
T ss_dssp             CHHHHEEEE----TTEEEESEEEC---CCEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred             CHHHhccCC----CCEEEEEEEeCCCCCcEEECHHHhhceEEEEECCCCEEEEEECC
Confidence            999999982    46896 587763 4689999999999999999999999999864


No 13 
>1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2 PDB: 1t6g_A 2b42_A 3hd8_A
Probab=100.00  E-value=1.3e-53  Score=447.75  Aligned_cols=317  Identities=19%  Similarity=0.353  Sum_probs=246.2

Q ss_pred             cccccEEEEEEEecCCCeEEEEEEEcCCCceeEecCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCCCCCCC--
Q 009271          104 NQFYWLHYTWIDIGTPNVSFLVALDAGSNLLWVPCQCIQCAPLSASYYTSLDRNLSEYDPSSSSSSKNVSCSHPLCKS--  181 (538)
Q Consensus       104 ~~~~~~yy~~v~iGtP~q~~~v~lDTGS~~~Wv~c~C~~C~~~~~~~~~~~~~~~~~f~ps~SsT~~~~~C~~~~C~~--  181 (538)
                      ++.+.+||++|.||||     |+|||||+++||+|.+  |                       .+++.++|.++.|..  
T Consensus        10 ~~~~~~Y~~~i~iGtP-----v~~DTGSs~lWv~c~~--~-----------------------~~~~~~~C~s~~C~~~~   59 (381)
T 1t6e_X           10 DPATSLYTIPFHDGAS-----LVLDVAGPLVWSTCDG--G-----------------------QPPAEIPCSSPTCLLAN   59 (381)
T ss_dssp             CTTTCCEEEEEETTEE-----EEEETTCCCEEECCCT--T-----------------------CCCCCCBTTSHHHHHHH
T ss_pred             cCCCcEEEEEEeCCCE-----EEEECCCCceEEeCCC--C-----------------------CCCCccCCCCchhcccc
Confidence            6677899999999998     9999999999999861  1                       124455666655642  


Q ss_pred             ---CCCCCCC-------CCCC-ceeEecCCCCceEEEEEEEEEEEeccCCCCCCCcccccc----EEEEEEEeecCCCCC
Q 009271          182 ---RSSCKSL-------KDPC-PYIADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSS----VIIGCGRKQTGSYLD  246 (538)
Q Consensus       182 ---~~~C~~~-------~~~c-~y~~~Y~dg~ss~~G~l~~D~v~l~~~~~~~~~~~~~~~----~~fGc~~~~~g~~~~  246 (538)
                         ...|...       +..| .|.++|+|| +.++|.+++|+|+|++.++.    ....+    +.|||++.+.+....
T Consensus        60 ~~~~~sc~~~~~~~~~~~~~c~~f~i~YgdG-s~~~G~l~~Dtv~ig~~~g~----~~v~~~~~~~~Fg~~~~~~~~~~~  134 (381)
T 1t6e_X           60 AYPAPGCPAPSCGSDKHDKPCTAYPYNPVSG-ACAAGSLSHTRFVANTTDGS----KPVSKVNVGVLAACAPSKLLASLP  134 (381)
T ss_dssp             SSCCTTCCCCCC------CBCEECCBCTTTC-CBCCEEEEEEEEEEEEESSS----SEEEEEEEEEEEEECCGGGGTTSC
T ss_pred             CCCCCCCCCccCCcCcCCCccccccccccCC-ceeeEEEEEEEEEeeccCCC----ccccceeeeeEeecCcccccCCCC
Confidence               1244421       2457 599999996 67799999999999864321    11233    478999886322111


Q ss_pred             CCCCceEEeeCCCCCChHHHHHhcCCCCCceEEeecCCCCccEEeCCCCCC------CceeeeeeecCCCCceEEEeEeE
Q 009271          247 GAAPDGVMGLGLGDVSVPSLLAKAGLIQNSFSICFDENDSGSVFFGDQGPA------TQQSTSFLPIGEKYDAYFVGVES  320 (538)
Q Consensus       247 ~~~~dGIlGLG~~~~Sl~sqL~~~g~i~~~FS~cl~~~~~G~l~fG~~d~~------~~~~tplv~~~~~~~~y~V~l~~  320 (538)
                       ...|||||||++++|+++||+++++++++||+||.++..|.|+||+.+..      ...|||++..+.. .+|.|+|++
T Consensus       135 -~~~dGIlGLg~~~~s~~~ql~~~~~~~~~FS~~L~~~~~G~l~fGg~~~~~~~~~g~l~~tPl~~~~~~-~~y~v~l~~  212 (381)
T 1t6e_X          135 -RGSTGVAGLANSGLALPAQVASAQKVANRFLLCLPTGGPGVAIFGGGPVPWPQFTQSMPYTPLVTKGGS-PAHYISARS  212 (381)
T ss_dssp             -TTEEEEEECSSSTTSHHHHHHHHHTCCSEEEEECCSSSCEEEEESCCSCSCHHHHTTCCEEECBCCTTC-CSCEECEEE
T ss_pred             -CCCceEEEeCCCcchhHHHHhhhcccCceEEEEeCCCCCeeEEeCCcccccccccCcceeeccccCCCC-cceEEEEEE
Confidence             36799999999999999999999988899999999877899999997653      3469999865332 467799999


Q ss_pred             EEECCeEeecC-----CceEEEcCCCccccccHHHHHHHHHHHHHhhcc--------cccccccccccccccccccc---
Q 009271          321 YCIGNSCLTQS-----GFQALVDSGASFTFLPTEIYAEVVVKFDKLVSS--------KRISLQGNSWKYCYNASSEE---  384 (538)
Q Consensus       321 i~Vgg~~l~~~-----~~~aiiDSGTs~t~LP~~~y~~l~~~~~~~~~~--------~~~~~~~~~~~~Cy~~~~~~---  384 (538)
                      |+||++.+...     ..++||||||++++||+++|++|.++|.+++..        .+.......+..||+.++..   
T Consensus       213 i~vg~~~~~~~~~~~~~~~~iiDTGTtl~~lp~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~C~~~~~~~~~~  292 (381)
T 1t6e_X          213 IVVGDTRVPVPEGALATGGVMLSTRLPYVLLRPDVYRPLMDAFTKALAAQHANGAPVARAVEAVAPFGVCYDTKTLGNNL  292 (381)
T ss_dssp             EEETTEECCCCTTCSCTTCEEECSSCSSEEECHHHHHHHHHHHHHHHHHC-------CCEECCCTTCSCEEEGGGCCEET
T ss_pred             EEEcCEEecCCHHHccCCCEEEECCCccEEeCHHHHHHHHHHHHHhhcccccccccccccCCCCCCCCccCCCCCCcccc
Confidence            99999988632     246999999999999999999999999887752        11111224567899876532   


Q ss_pred             -cccCccEEEEEcCCeeeeeecceeEEeecCCcceEEEEEEecCC--------CceeEcceeeeeeEEEEeCCCCEEEEe
Q 009271          385 -MLKVPDMRLIFSKNQSFVVRNHIFSFPENEGFTVFCLTVMSTDG--------DYGIIGQNFMMGHRIVFDRENLKLAWS  455 (538)
Q Consensus       385 -~~~~P~it~~f~gg~~~~v~~~~y~~~~~~~~~~~Cl~i~~~~~--------~~~IlG~~fl~~~yvVFD~e~~rIGfa  455 (538)
                       ...+|+|+|+|+||.+|.|++++|++...+  +..|++|+..+.        +.||||+.||+++|+|||++|+|||||
T Consensus       293 ~~~~~P~i~f~f~gg~~~~l~~~~y~~~~~~--~~~Cl~~~~~~~~~~~~~~~~~~ILGd~fl~~~yvvfD~~~~riGfA  370 (381)
T 1t6e_X          293 GGYAVPNVQLGLDGGSDWTMTGKNSMVDVKQ--GTACVAFVEMKGVAAGDGRAPAVILGGAQMEDFVLDFDMEKKRLGFS  370 (381)
T ss_dssp             TEECCCCEEEEETTSCEEEECHHHHEEEEET--TEEEESEEECCCCC------CSEEECHHHHTTEEEEEETTTTEEEEE
T ss_pred             cCCcCCeEEEEECCCcEEEeCCCeEEEEcCC--CeEEEEEEcCCCcccccCCCceEEEChHHhCCcEEEEECCCCEEEEe
Confidence             136899999998779999999999987643  579999988653        479999999999999999999999999


Q ss_pred             ecCC
Q 009271          456 HSKC  459 (538)
Q Consensus       456 ~~~C  459 (538)
                      ++..
T Consensus       371 ~~~~  374 (381)
T 1t6e_X          371 RLPH  374 (381)
T ss_dssp             ECCT
T ss_pred             cccC
Confidence            9754


No 14 
>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens}
Probab=100.00  E-value=2.4e-53  Score=446.14  Aligned_cols=324  Identities=19%  Similarity=0.284  Sum_probs=256.4

Q ss_pred             eccccccEEEEEEEecCCCeEEEEEEEcCCCceeEecC-CCCCCCCccccccccCCCCCCCCCCCCCCCccccCCCCCCC
Q 009271          102 FGNQFYWLHYTWIDIGTPNVSFLVALDAGSNLLWVPCQ-CIQCAPLSASYYTSLDRNLSEYDPSSSSSSKNVSCSHPLCK  180 (538)
Q Consensus       102 ~~~~~~~~yy~~v~iGtP~q~~~v~lDTGS~~~Wv~c~-C~~C~~~~~~~~~~~~~~~~~f~ps~SsT~~~~~C~~~~C~  180 (538)
                      +.+..+..||++|.||||+|+|.|+|||||+++||+|. |..|              .+.|+|++|+|++.+.       
T Consensus         7 l~~~~~~~Y~~~i~iGTP~q~~~v~~DTGSs~lWv~~~~c~~~--------------~~~f~~~~SsT~~~~~-------   65 (383)
T 2ewy_A            7 LQGDSGRGYYLEMLIGTPPQKLQILVDTGSSNFAVAGTPHSYI--------------DTYFDTERSSTYRSKG-------   65 (383)
T ss_dssp             EEEETTTEEEEEEEETTTTEEEEEEEETTCCCEEEECSCBTTB--------------SCCCCGGGCTTCEEEE-------
T ss_pred             ccCCCCCcEEEEEEecCCCceEEEEEecCCCceEEecCCCCcc--------------ccCcccccCccceeCC-------
Confidence            44566778999999999999999999999999999997 7655              2689999999999764       


Q ss_pred             CCCCCCCCCCCCceeEecCCCCceEEEEEEEEEEEeccCCCCCCCccccccEEEEEEEeecCCCCCCCCCceEEeeCCCC
Q 009271          181 SRSSCKSLKDPCPYIADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGD  260 (538)
Q Consensus       181 ~~~~C~~~~~~c~y~~~Y~dg~ss~~G~l~~D~v~l~~~~~~~~~~~~~~~~~fGc~~~~~g~~~~~~~~dGIlGLG~~~  260 (538)
                                 |.|.+.|++| + ++|.+++|+|+|++..      .....+.|+|.....+.|......|||||||+..
T Consensus        66 -----------~~~~i~Yg~G-s-~~G~~~~Dtv~i~~~~------~~~~~~~~~~~~~~~~~~~~~~~~dGilGLg~~~  126 (383)
T 2ewy_A           66 -----------FDVTVKYTQG-S-WTGFVGEDLVTIPKGF------NTSFLVNIATIFESENFFLPGIKWNGILGLAYAT  126 (383)
T ss_dssp             -----------EEEEEECSSC-E-EEEEEEEEEEEETTTE------EEEEEEEEEEEEEEESCSCTTCCCCEEEECSCGG
T ss_pred             -----------ceEEEEECCc-E-EEEEEEEEEEEECCCc------cceeEEEEEEEEeecceeeccCcCceEEecCchh
Confidence                       8899999996 4 6899999999998631      1223578999887777665444679999999876


Q ss_pred             CC--------hHHHHHhcCCCCCceEEeecC---------CCCccEEeCCCCCCCc----eeeeeeecCCCCceEEEeEe
Q 009271          261 VS--------VPSLLAKAGLIQNSFSICFDE---------NDSGSVFFGDQGPATQ----QSTSFLPIGEKYDAYFVGVE  319 (538)
Q Consensus       261 ~S--------l~sqL~~~g~i~~~FS~cl~~---------~~~G~l~fG~~d~~~~----~~tplv~~~~~~~~y~V~l~  319 (538)
                      ++        ++.+|.+++.++++||+||.+         ...|.|+||++|+.++    .|+|++.    ..+|.|.++
T Consensus       127 ~s~~~~~~~~~~~~l~~q~~i~~~FS~~l~~~~~~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~~~v~l~  202 (383)
T 2ewy_A          127 LAKPSSSLETFFDSLVTQANIPNVFSMQMCGAGLPVAGSGTNGGSLVLGGIEPSLYKGDIWYTPIKE----EWYYQIEIL  202 (383)
T ss_dssp             GCSSCTTSCCHHHHHHHHHTCCSCEEEEECCC---------CCEEEEETSCCGGGCCSCEEEEECSS----BTTBBCCEE
T ss_pred             cccccccccCHHHHHHHccCCCcceEEEeeccccccccCCCCCeEEEeCccchhhccCccEEEecCC----CceEEEEEE
Confidence            54        567899998888899999952         2579999999998764    4888864    268999999


Q ss_pred             EEEECCeEeecC-----CceEEEcCCCccccccHHHHHHHHHHHHHhhcccccccc--cccccccccccccccccCccEE
Q 009271          320 SYCIGNSCLTQS-----GFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQ--GNSWKYCYNASSEEMLKVPDMR  392 (538)
Q Consensus       320 ~i~Vgg~~l~~~-----~~~aiiDSGTs~t~LP~~~y~~l~~~~~~~~~~~~~~~~--~~~~~~Cy~~~~~~~~~~P~it  392 (538)
                      +|.||++.+...     ...+||||||++++||+++|++|.++|.+..........  ......|+.........+|+|+
T Consensus       203 ~i~v~g~~~~~~~~~~~~~~aiiDSGTt~~~lP~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~  282 (383)
T 2ewy_A          203 KLEIGGQSLNLDCREYNADKAIVDSGTTLLRLPQKVFDAVVEAVARASLIPEFSDGFWTGSQLACWTNSETPWSYFPKIS  282 (383)
T ss_dssp             EEEETTEECCCCTTTTTSSCEEECTTCSSEEEEHHHHHHHHHHHHHTTCSSCCCHHHHHTSEEEEECSSSCGGGGSCCEE
T ss_pred             EEEECCEEccccccccCCccEEEEcCCccccCCHHHHHHHHHHHhhhcccccCccccccccccccccCCcccHhhCCcEE
Confidence            999999988532     357999999999999999999999999886643211110  0123578876544445789999


Q ss_pred             EEEcCC-----eeeeeecceeEEeecC-CcceEEEE--EEecCCCceeEcceeeeeeEEEEeCCCCEEEEeecCCCcccc
Q 009271          393 LIFSKN-----QSFVVRNHIFSFPENE-GFTVFCLT--VMSTDGDYGIIGQNFMMGHRIVFDRENLKLAWSHSKCEEVID  464 (538)
Q Consensus       393 ~~f~gg-----~~~~v~~~~y~~~~~~-~~~~~Cl~--i~~~~~~~~IlG~~fl~~~yvVFD~e~~rIGfa~~~C~~~~~  464 (538)
                      |+|.|+     .++.|++++|++...+ +.+..|++  +.+.+ +.||||+.|||++|+|||++++|||||+++|....+
T Consensus       283 f~f~g~~~~~~~~~~l~~~~yi~~~~~~~~~~~C~~~~i~~~~-~~~ILG~~fl~~~yvvfD~~~~rIGfA~~~c~~~~~  361 (383)
T 2ewy_A          283 IYLRDENSSRSFRITILPQLYIQPMMGAGLNYECYRFGISPST-NALVIGATVMEGFYVIFDRAQKRVGFAASPCAEIAG  361 (383)
T ss_dssp             EEEECSSTTEEEEEEECHHHHEEEECCCTTCSEEEEESEEEES-SCEEECHHHHTTEEEEEETTTTEEEEEECTTCBSSS
T ss_pred             EEECCCCCCceEEEEEChHHheeecccCCCCceeEEEEecCCC-CcEEEChHHhCCeeEEEECCCCeEEEEeccCCCcCC
Confidence            999775     3689999999987642 12468975  45543 579999999999999999999999999999987655


Q ss_pred             cccccC
Q 009271          465 KSHVHL  470 (538)
Q Consensus       465 ~~~~~~  470 (538)
                      ...++.
T Consensus       362 ~~i~~i  367 (383)
T 2ewy_A          362 AAVSEI  367 (383)
T ss_dssp             CBCEEE
T ss_pred             cceeee
Confidence            555544


No 15 
>4aa9_A Chymosin; hydrolase, aspartic peptidase, rennet; HET: NAG; 1.60A {Camelus dromedarius} PDB: 4aa8_A 1czi_E* 1cms_A 4cms_A 3cms_A
Probab=100.00  E-value=5.2e-54  Score=440.31  Aligned_cols=300  Identities=22%  Similarity=0.380  Sum_probs=247.3

Q ss_pred             eeeccccccEEEEEEEecCCCeEEEEEEEcCCCceeEecC-CCC--CCCCccccccccCCCCCCCCCCCCCCCccccCCC
Q 009271          100 HFFGNQFYWLHYTWIDIGTPNVSFLVALDAGSNLLWVPCQ-CIQ--CAPLSASYYTSLDRNLSEYDPSSSSSSKNVSCSH  176 (538)
Q Consensus       100 ~~~~~~~~~~yy~~v~iGtP~q~~~v~lDTGS~~~Wv~c~-C~~--C~~~~~~~~~~~~~~~~~f~ps~SsT~~~~~C~~  176 (538)
                      +++.|+.+..||++|.||||||+|.|++||||+++||+|. |..  |.            .++.|+|++|+|++...   
T Consensus         3 ~~l~n~~d~~Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~~~~C~~~~C~------------~~~~y~~~~SsT~~~~~---   67 (320)
T 4aa9_A            3 EPLTSYLDSQYFGKIYIGTPPQEFTVVFDTGSSDLWVPSIYCKSNVCK------------NHHRFDPRKSSTFRNLG---   67 (320)
T ss_dssp             -----CCCCCCEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSHHHH------------TSCCBCGGGCTTCEEEE---
T ss_pred             ccceeccCCEEEEEEEECCCCeEEEEEEeCCCCceEEcCCCCCccccC------------CCCCCCCCCCcCeEcCC---
Confidence            4566888899999999999999999999999999999998 763  43            24699999999999764   


Q ss_pred             CCCCCCCCCCCCCCCCceeEecCCCCceEEEEEEEEEEEeccCCCCCCCccccccEEEEEEEeecCCCCCCCCCceEEee
Q 009271          177 PLCKSRSSCKSLKDPCPYIADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGL  256 (538)
Q Consensus       177 ~~C~~~~~C~~~~~~c~y~~~Y~dg~ss~~G~l~~D~v~l~~~~~~~~~~~~~~~~~fGc~~~~~g~~~~~~~~dGIlGL  256 (538)
                                     |.|.+.|++| + +.|.+++|+|+|++.        ...++.|||++...+........+|||||
T Consensus        68 ---------------~~~~i~Yg~g-s-~~G~~~~D~v~ig~~--------~v~~~~fg~~~~~~~~~~~~~~~~GilGL  122 (320)
T 4aa9_A           68 ---------------KPLSIHYGTG-S-MEGFLGYDTVTVSNI--------VDPNQTVGLSTEQPGEVFTYSEFDGILGL  122 (320)
T ss_dssp             ---------------EEEEEEETTE-E-EEEEEEEEEEEETTE--------EEEEEEEEEEEECCSHHHHSCCCSEEEEC
T ss_pred             ---------------cEEEEEECCc-E-EEEEEEEEEEEECCE--------eecCeEEEEEEEcccccccccCcccEEec
Confidence                           8999999996 4 799999999999874        36889999999887743333467999999


Q ss_pred             CCCCC------ChHHHHHhcCCCC-CceEEeecCC-CCccEEeCCCCCCCce----eeeeeecCCCCceEEEeEeEEEEC
Q 009271          257 GLGDV------SVPSLLAKAGLIQ-NSFSICFDEN-DSGSVFFGDQGPATQQ----STSFLPIGEKYDAYFVGVESYCIG  324 (538)
Q Consensus       257 G~~~~------Sl~sqL~~~g~i~-~~FS~cl~~~-~~G~l~fG~~d~~~~~----~tplv~~~~~~~~y~V~l~~i~Vg  324 (538)
                      |+..+      +++++|.++|+|. ++||+||.++ ..|.|+||++|+.++.    |+|++.    ..+|.|.+++|.||
T Consensus       123 g~~~~s~~~~~~~~~~l~~~g~i~~~~Fs~~l~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~w~v~l~~i~v~  198 (320)
T 4aa9_A          123 AYPSLASEYSVPVFDNMMDRHLVARDLFSVYMDRNGQGSMLTLGAIDPSYYTGSLHWVPVTL----QQYWQFTVDSVTIN  198 (320)
T ss_dssp             SCGGGSCTTCCCHHHHHHHTTCSSSSEEEEECCSSSSCCEEEETCCCGGGEEEEEEEEECSS----BTTBEEEECEEEET
T ss_pred             CcccccccCCCCHHHHHHhCCCCCCceEEEEeCCCCCCeEEEEcccCHHHccCceEEEEccc----CCceEEEEeEEEEC
Confidence            98754      5788999999996 9999999984 6899999999998753    788753    36899999999999


Q ss_pred             CeEeec-CCceEEEcCCCccccccHHHHHHHHHHHHHhhcccccccccccccccccccccccccCccEEEEEcCCeeeee
Q 009271          325 NSCLTQ-SGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMRLIFSKNQSFVV  403 (538)
Q Consensus       325 g~~l~~-~~~~aiiDSGTs~t~LP~~~y~~l~~~~~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~it~~f~gg~~~~v  403 (538)
                      ++.+.. ....+||||||++++||+++|++|.+++.+...     .     ...|..+|.....+|+|+|+| ||.++.|
T Consensus       199 ~~~~~~~~~~~~iiDsGtt~~~lP~~~~~~i~~~~~~~~~-----~-----~g~~~~~C~~~~~~p~i~f~f-~g~~~~l  267 (320)
T 4aa9_A          199 GVAVACVGGCQAILDTGTSVLFGPSSDILKIQMAIGATEN-----R-----YGEFDVNCGNLRSMPTVVFEI-NGRDYPL  267 (320)
T ss_dssp             TEEEESTTCEEEEECTTCSSEEEEHHHHHHHHHHTTCEEC-----T-----TSCEEECGGGGGGCCCEEEEE-TTEEEEE
T ss_pred             CEEeccCCCcEEEEECCCCcEECCHHHHHHHHHHhCCccc-----C-----CCcEEEeCCCCCcCceEEEEE-CCEEEEE
Confidence            998863 456899999999999999999999987753321     1     123455555556789999999 6799999


Q ss_pred             ecceeEEeecCCcceEEE-EEEecC-CCceeEcceeeeeeEEEEeCCCCEEEEeecC
Q 009271          404 RNHIFSFPENEGFTVFCL-TVMSTD-GDYGIIGQNFMMGHRIVFDRENLKLAWSHSK  458 (538)
Q Consensus       404 ~~~~y~~~~~~~~~~~Cl-~i~~~~-~~~~IlG~~fl~~~yvVFD~e~~rIGfa~~~  458 (538)
                      ++++|+...    ...|+ +|+... ++.||||+.|||++|+|||++++|||||+++
T Consensus       268 ~~~~y~~~~----~~~C~~~i~~~~~~~~~ilG~~fl~~~y~vfD~~~~~igfA~a~  320 (320)
T 4aa9_A          268 SPSAYTSKD----QGFCTSGFQGDNNSELWILGDVFIREYYSVFDRANNRVGLAKAI  320 (320)
T ss_dssp             CHHHHEEEE----TTEEEESEEEETTCCCEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred             CHHHhccCC----CCeEEEEEEcCCCCCcEEEChHHhcceEEEEECCCCEEEEEecC
Confidence            999999763    46896 677754 3579999999999999999999999999874


No 16 
>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ...
Probab=100.00  E-value=4.3e-54  Score=458.45  Aligned_cols=302  Identities=19%  Similarity=0.287  Sum_probs=247.6

Q ss_pred             ceeeeccccccEEEEEEEecCCCeEEEEEEEcCCCceeEecC-CC--CCCCCccccccccCCCCCCCCCCCCCCCccccC
Q 009271           98 QTHFFGNQFYWLHYTWIDIGTPNVSFLVALDAGSNLLWVPCQ-CI--QCAPLSASYYTSLDRNLSEYDPSSSSSSKNVSC  174 (538)
Q Consensus        98 ~~~~~~~~~~~~yy~~v~iGtP~q~~~v~lDTGS~~~Wv~c~-C~--~C~~~~~~~~~~~~~~~~~f~ps~SsT~~~~~C  174 (538)
                      ..+++.|+.+..||++|.||||||+|.|++||||+++||+|. |.  .|..            ++.|+|++|+|++... 
T Consensus       128 ~~~~L~n~~~~~Y~~~I~IGTP~Q~~~vi~DTGSs~lWV~~~~C~~~~C~~------------~~~ydps~SsT~~~~~-  194 (453)
T 2bju_A          128 DNIELVDFQNIMFYGDAEVGDNQQPFTFILDTGSANLWVPSVKCTTAGCLT------------KHLYDSSKSRTYEKDG-  194 (453)
T ss_dssp             EEEEEEEETTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSTTGGG------------SCCBCGGGCTTCEEEE-
T ss_pred             CceeeEecCCCEEEEEEEECCCCeEEEEEEECCCcceEEeccCCCccccCC------------CCcCCCccCCceeECC-
Confidence            346677888899999999999999999999999999999998 85  4542            4689999999999753 


Q ss_pred             CCCCCCCCCCCCCCCCCCceeEecCCCCceEEEEEEEEEEEeccCCCCCCCccccccEEEEEEEeec--CCCCCCCCCce
Q 009271          175 SHPLCKSRSSCKSLKDPCPYIADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIGCGRKQT--GSYLDGAAPDG  252 (538)
Q Consensus       175 ~~~~C~~~~~C~~~~~~c~y~~~Y~dg~ss~~G~l~~D~v~l~~~~~~~~~~~~~~~~~fGc~~~~~--g~~~~~~~~dG  252 (538)
                                       |.|.+.|++| + ++|.+++|+|+|++.        ... +.|||++.+.  |.+......||
T Consensus       195 -----------------~~~~i~YgdG-s-~~G~~~~Dtv~ig~~--------~v~-~~Fg~a~~~~~~g~~f~~~~~dG  246 (453)
T 2bju_A          195 -----------------TKVEMNYVSG-T-VSGFFSKDLVTVGNL--------SLP-YKFIEVIDTNGFEPTYTASTFDG  246 (453)
T ss_dssp             -----------------EEEEEECSSS-E-EEEEEEEEEEEETTE--------EEE-EEEEEEEECGGGTTHHHHSSCCE
T ss_pred             -----------------cEEEEEcCCC-C-eEEEEEEEEEEEeCc--------EEE-EEEEEEEEecccCccccccCCce
Confidence                             8999999996 4 799999999999874        246 9999999987  65332236799


Q ss_pred             EEeeCCCCC------ChHHHHHhcCCCC-CceEEeecCC--CCccEEeCCCCCCCc----eeeeeeecCCCCceEEEeEe
Q 009271          253 VMGLGLGDV------SVPSLLAKAGLIQ-NSFSICFDEN--DSGSVFFGDQGPATQ----QSTSFLPIGEKYDAYFVGVE  319 (538)
Q Consensus       253 IlGLG~~~~------Sl~sqL~~~g~i~-~~FS~cl~~~--~~G~l~fG~~d~~~~----~~tplv~~~~~~~~y~V~l~  319 (538)
                      |||||++.+      +++++|.++|+|. ++||+||.++  ..|.|+|||+|+.++    .|+|++.    ..+|.|.++
T Consensus       247 IlGLg~~~~s~~~~~~~~~~L~~qg~i~~~~FS~~L~~~~~~~G~l~fGg~D~~~y~G~l~~~pv~~----~~~w~V~l~  322 (453)
T 2bju_A          247 ILGLGWKDLSIGSVDPIVVELKNQNKIENALFTFYLPVHDKHTGFLTIGGIEERFYEGPLTYEKLNH----DLYWQITLD  322 (453)
T ss_dssp             EEECSCGGGSTTCCCCHHHHHHHTTSSSSCEEEEECCBTTTBCEEEEESSCCGGGEEEEEEEEEEEE----ETTEEEEEE
T ss_pred             eEeccCCcccccCCCcHHHHHHHCCCCCCCEEEEEeCCCCCCCeEEEECCCCHHHcCCceEEEecCC----CceEEEEEE
Confidence            999998764      4678999999996 9999999875  579999999998765    4899864    368999999


Q ss_pred             EEEECCeEeecCCceEEEcCCCccccccHHHHHHHHHHHHHhhcccccccccccccccccccccccccCccEEEEEcCCe
Q 009271          320 SYCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMRLIFSKNQ  399 (538)
Q Consensus       320 ~i~Vgg~~l~~~~~~aiiDSGTs~t~LP~~~y~~l~~~~~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~it~~f~gg~  399 (538)
                       |.||++ +. ....+||||||++++||+++|++|.+++.+.    . ...+    .+|..+|.. ..+|+|+|+| ||.
T Consensus       323 -I~Vgg~-~~-~~~~aIiDSGTsl~~lP~~~~~~l~~~i~~~----~-~~~g----~~~~v~C~~-~~~P~itf~f-gg~  388 (453)
T 2bju_A          323 -AHVGNI-ML-EKANCIVDSGTSAITVPTDFLNKMLQNLDVI----K-VPFL----PFYVTLCNN-SKLPTFEFTS-ENG  388 (453)
T ss_dssp             -EEETTE-EE-EEEEEEECTTCCSEEECHHHHHHHTTTSSCE----E-CTTS----SCEEEETTC-TTCCCEEEEC-SSC
T ss_pred             -EEECcE-Ee-ccccEEEcCCCCeEecCHHHHHHHHHHhCCc----c-cCCC----ceEEEecCC-CCCCcEEEEE-CCE
Confidence             999994 43 5678999999999999999999998766432    1 1111    133344433 4789999999 679


Q ss_pred             eeeeecceeEEeecCCcceEEE-EEEecC--CCceeEcceeeeeeEEEEeCCCCEEEEeecC
Q 009271          400 SFVVRNHIFSFPENEGFTVFCL-TVMSTD--GDYGIIGQNFMMGHRIVFDRENLKLAWSHSK  458 (538)
Q Consensus       400 ~~~v~~~~y~~~~~~~~~~~Cl-~i~~~~--~~~~IlG~~fl~~~yvVFD~e~~rIGfa~~~  458 (538)
                      .+.|++++|++.........|+ +|++.+  .+.||||+.||+++|+|||++++|||||+++
T Consensus       389 ~~~l~~~~yi~~~~~~g~~~C~~~~~~~~~~~~~~ILGd~Flr~~yvVFD~~n~rIGfA~~~  450 (453)
T 2bju_A          389 KYTLEPEYYLQHIEDVGPGLCMLNIIGLDFPVPTFILGDPFMRKYFTVFDYDNHSVGIALAK  450 (453)
T ss_dssp             EEEECHHHHEEECTTTSTTEEEECEEECCCSSCEEEECHHHHHHEEEEEETTTTEEEEEEEC
T ss_pred             EEEECHHHhEeecccCCCceEEEEEEeCCCCCCCEEECHHHhhcEEEEEECCCCEEEEEEcc
Confidence            9999999999986542256996 788765  3589999999999999999999999999975


No 17 
>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ...
Probab=100.00  E-value=5.5e-54  Score=443.91  Aligned_cols=307  Identities=23%  Similarity=0.384  Sum_probs=252.6

Q ss_pred             eeeeccccccEEEEEEEecCCCeEEEEEEEcCCCceeEecC-CCCCCCCccccccccCCCCCCCCCCCCCCCccccCCCC
Q 009271           99 THFFGNQFYWLHYTWIDIGTPNVSFLVALDAGSNLLWVPCQ-CIQCAPLSASYYTSLDRNLSEYDPSSSSSSKNVSCSHP  177 (538)
Q Consensus        99 ~~~~~~~~~~~yy~~v~iGtP~q~~~v~lDTGS~~~Wv~c~-C~~C~~~~~~~~~~~~~~~~~f~ps~SsT~~~~~C~~~  177 (538)
                      .+++.|+.+..||++|.||||||++.|++||||+++||+|. |..|.. .       |..++.|+|++|+|++..     
T Consensus         9 ~~~l~n~~d~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~-~-------C~~~~~y~~~~SsT~~~~-----   75 (341)
T 3k1w_A            9 SVILTNYMDTQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYT-A-------CVYHKLFDASDSSSYKHN-----   75 (341)
T ss_dssp             EEEEEEETTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTSCTTCH-H-------HHTSCCBCGGGCTTCEEE-----
T ss_pred             cccceEccCCEEEEEEEEcCCCcEEEEEEeCCCcceEEccCCCCCCCC-c-------ccCCCCCCCCcCcCeeEC-----
Confidence            46677888999999999999999999999999999999998 863210 0       113469999999999964     


Q ss_pred             CCCCCCCCCCCCCCCceeEecCCCCceEEEEEEEEEEEeccCCCCCCCccccccEEEEEEEeecCCCCCCCCCceEEeeC
Q 009271          178 LCKSRSSCKSLKDPCPYIADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLG  257 (538)
Q Consensus       178 ~C~~~~~C~~~~~~c~y~~~Y~dg~ss~~G~l~~D~v~l~~~~~~~~~~~~~~~~~fGc~~~~~g~~~~~~~~dGIlGLG  257 (538)
                                   .|.|.+.|++| + +.|.+++|+|+|++.        .. ++.|||++...+........+||||||
T Consensus        76 -------------~~~~~i~Yg~g-s-~~G~~~~D~v~ig~~--------~v-~~~fg~~~~~~~~~~~~~~~~GilGLg  131 (341)
T 3k1w_A           76 -------------GTELTLRYSTG-T-VSGFLSQDIITVGGI--------TV-TQMFGEVTEMPALPFMLAEFDGVVGMG  131 (341)
T ss_dssp             -------------EEEEEEEETTE-E-EEEEEEEEEEEETTE--------EE-EEEEEEEEECCHHHHTTCSSSEEEECS
T ss_pred             -------------CCEEEEEECCc-E-EEEEEEEEEEEECCc--------ee-eEEEEEEEEccccccccCCcceEEECC
Confidence                         38999999986 4 899999999999875        25 999999998877522233679999999


Q ss_pred             CCCCC------hHHHHHhcCCCC-CceEEeecCCC------CccEEeCCCCCCCce----eeeeeecCCCCceEEEeEeE
Q 009271          258 LGDVS------VPSLLAKAGLIQ-NSFSICFDEND------SGSVFFGDQGPATQQ----STSFLPIGEKYDAYFVGVES  320 (538)
Q Consensus       258 ~~~~S------l~sqL~~~g~i~-~~FS~cl~~~~------~G~l~fG~~d~~~~~----~tplv~~~~~~~~y~V~l~~  320 (538)
                      +..++      ++.+|+++|+|. ++||+||.++.      .|.|+||++|+.++.    |+|+..    ..+|.|.+++
T Consensus       132 ~~~~s~~~~~~~~~~l~~qg~i~~~~Fs~~l~~~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~w~v~l~~  207 (341)
T 3k1w_A          132 FIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNRDSENSQSLGGQIVLGGSDPQHYEGNFHYINLIK----TGVWQIQMKG  207 (341)
T ss_dssp             CGGGCGGGCCCHHHHHHHHTCBSSSEEEEEECCCC-----CCEEEEESSCCGGGEEEEEEEEECSS----TTSCEEEECC
T ss_pred             chhhcccCCCCHHHHHHHCCCCCCCEEEEEEeCCCCcCCCCCCEEEECccChHHccCceEEEecCC----CCEEEEEEeE
Confidence            98764      789999999996 99999998764      799999999998763    788752    3789999999


Q ss_pred             EEECCeEee-cCCceEEEcCCCccccccHHHHHHHHHHHHHhhcccccccccccccccccccccccccCccEEEEEcCCe
Q 009271          321 YCIGNSCLT-QSGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMRLIFSKNQ  399 (538)
Q Consensus       321 i~Vgg~~l~-~~~~~aiiDSGTs~t~LP~~~y~~l~~~~~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~it~~f~gg~  399 (538)
                      |.||++.+. .....+||||||++++||+++|++|.+++.....      ...     |.++|.....+|+|+|+| ||.
T Consensus       208 i~v~~~~~~~~~~~~~iiDsGtt~~~lP~~~~~~i~~~~~~~~~------~~g-----~~~~C~~~~~~p~i~f~f-~g~  275 (341)
T 3k1w_A          208 VSVGSSTLLCEDGCLALVDTGASYISGSTSSIEKLMEALGAKKR------LFD-----YVVKCNEGPTLPDISFHL-GGK  275 (341)
T ss_dssp             EEETTEEEECTTCEEEEECTTCSSEEECHHHHHHHHHHHTCEEC------SSC-----EEEEGGGGGGCCCEEEEE-TTE
T ss_pred             EEECCEEeecCCCCEEEEECCCChhcCCHHHHHHHHHHcCCeec------CCC-----eEEeCCCCCcCCcEEEEE-CCE
Confidence            999999753 3567899999999999999999999988754321      111     455665556789999999 679


Q ss_pred             eeeeecceeEEeecCCcceEEE-EEEec-----CCCceeEcceeeeeeEEEEeCCCCEEEEeecC
Q 009271          400 SFVVRNHIFSFPENEGFTVFCL-TVMST-----DGDYGIIGQNFMMGHRIVFDRENLKLAWSHSK  458 (538)
Q Consensus       400 ~~~v~~~~y~~~~~~~~~~~Cl-~i~~~-----~~~~~IlG~~fl~~~yvVFD~e~~rIGfa~~~  458 (538)
                      ++.|++++|++.........|+ +|+..     ..+.||||+.|||++|+|||++++|||||+++
T Consensus       276 ~~~l~~~~~~~~~~~~~~~~C~~~i~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~igfA~a~  340 (341)
T 3k1w_A          276 EYTLTSADYVFQESYSSKKLCTLAIHAMDIPPPTGPTWALGATFIRKFYTEFDRRNNRIGFALAR  340 (341)
T ss_dssp             EEEECHHHHBCCSCCCTTSEEEBSEEECCCCTTTCSCEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred             EEEECHHHheeEccCCCCCeEEeEEEecccCCCCCCeEEEChHHhcceEEEEeCCCCEEEEEECC
Confidence            9999999999876543367996 67763     24589999999999999999999999999975


No 18 
>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A*
Probab=100.00  E-value=1.4e-53  Score=439.03  Aligned_cols=303  Identities=19%  Similarity=0.288  Sum_probs=245.1

Q ss_pred             cccccEEEEEEEecCCCeEEEEEEEcCCCceeEecC-CCCCCCCccccccccCCCCCCCCCCCCCCCccccCCCCCCCCC
Q 009271          104 NQFYWLHYTWIDIGTPNVSFLVALDAGSNLLWVPCQ-CIQCAPLSASYYTSLDRNLSEYDPSSSSSSKNVSCSHPLCKSR  182 (538)
Q Consensus       104 ~~~~~~yy~~v~iGtP~q~~~v~lDTGS~~~Wv~c~-C~~C~~~~~~~~~~~~~~~~~f~ps~SsT~~~~~C~~~~C~~~  182 (538)
                      .+.+..|+++|.||||+|+|.|+|||||+++||+|. |..|..+          ..+.|+|++|+|++.++         
T Consensus        11 ~~~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~C~~~~~~----------~~~~y~~~~SsT~~~~~---------   71 (329)
T 3c9x_A           11 DSADSEYITSVSIGTPAQVLPLDFDTGSSDLWVFSSETPKSSAT----------GHAIYTPSKSSTSKKVS---------   71 (329)
T ss_dssp             STTCCCEEEEEEETTTTEEEEEEEETTCCCEEECBTTSCHHHHT----------TSCCBCGGGCTTCEECT---------
T ss_pred             CCCCCEEEEEEEECCCCeEEEEEEcCCCCCeEEecCCCCccccC----------CCCcCCcccCcCceEcC---------
Confidence            456778999999999999999999999999999998 8776422          34799999999999763         


Q ss_pred             CCCCCCCCCCceeEecCCCCceEEEEEEEEEEEeccCCCCCCCccccccEEEEEEEeecCCCCCCCCCceEEeeCCCCCC
Q 009271          183 SSCKSLKDPCPYIADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVS  262 (538)
Q Consensus       183 ~~C~~~~~~c~y~~~Y~dg~ss~~G~l~~D~v~l~~~~~~~~~~~~~~~~~fGc~~~~~g~~~~~~~~dGIlGLG~~~~S  262 (538)
                              .|.|.+.|++| +.+.|.+++|+|+|++.        ...++.|||++.+++.|......|||||||+..++
T Consensus        72 --------~~~~~i~Yg~G-s~~~G~~~~D~v~ig~~--------~v~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s  134 (329)
T 3c9x_A           72 --------GASWSISYGDG-SSSSGDVYTDKVTIGGF--------SVNTQGVESATRVSTEFVQDTVISGLVGLAFDSGN  134 (329)
T ss_dssp             --------TCBEEEECTTS-CEEEEEEEEEEEEETTE--------EEEEEEEEEEEEECHHHHHCTTCCEEEECSCGGGC
T ss_pred             --------CCeEEEEeCCC-CcEEEEEEEEEEEECCE--------EEcceEEEEEEecCccccccCCCceeEEeCccccc
Confidence                    48999999996 67899999999999864        36789999999987766433367999999987644


Q ss_pred             ---------hHHHHHhcCCCCCceEEeecCCCCccEEeCCCCCCCc----eeeeeeecCCCCceEEEeEeEEEECCeEee
Q 009271          263 ---------VPSLLAKAGLIQNSFSICFDENDSGSVFFGDQGPATQ----QSTSFLPIGEKYDAYFVGVESYCIGNSCLT  329 (538)
Q Consensus       263 ---------l~sqL~~~g~i~~~FS~cl~~~~~G~l~fG~~d~~~~----~~tplv~~~~~~~~y~V~l~~i~Vgg~~l~  329 (538)
                               ++++|+++ +-+++||+||.++..|.|+||++|+.++    .|+|++..   ..+|.|.|++|.||++.+.
T Consensus       135 ~~~~~~~~~~~~~l~~~-i~~~~FS~~l~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~---~~~~~v~l~~i~v~~~~~~  210 (329)
T 3c9x_A          135 QVRPHPQKTWFSNAASS-LAEPLFTADLRHGQNGSYNFGYIDTSVAKGPVAYTPVDNS---QGFWEFTASGYSVGGGKLN  210 (329)
T ss_dssp             CCBSSCCCCHHHHHHTT-SSSSEEEEECCSSSCEEEEESSCCGGGCSSCEEEEECBCT---TSSCEEEECCEEETTCCCC
T ss_pred             ccCCCCCCCHHHHHHHh-cCCCEEEEEecCCCCcEEEEeCcChhhcccceEEEEccCC---CceEEEEEeeEEECCEecc
Confidence                     67788875 3359999999987789999999998765    48898642   3689999999999999887


Q ss_pred             cCCceEEEcCCCccccccHHHHHHHHHHHHHhhcccccccccccccccccccccccccCccEEEEEcCCeeeeeecceeE
Q 009271          330 QSGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMRLIFSKNQSFVVRNHIFS  409 (538)
Q Consensus       330 ~~~~~aiiDSGTs~t~LP~~~y~~l~~~~~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~it~~f~gg~~~~v~~~~y~  409 (538)
                      ...+.+||||||++++||+++|++|.+++.....   ..........|+       ..+|+|+|+| +|.++.|++++|+
T Consensus       211 ~~~~~aiiDSGTt~~~lp~~~~~~i~~~i~~a~~---~~~~~~~~~~C~-------~~~P~i~f~f-~g~~~~ip~~~~~  279 (329)
T 3c9x_A          211 RNSIDGIADTGTTLLLLDDNVVDAYYANVQSAQY---DNQQEGVVFDCD-------EDLPSFSFGV-GSSTITIPGDLLN  279 (329)
T ss_dssp             SCCEEEEECTTCCSEEECHHHHHHHHTTCTTCEE---ETTTTEEEEETT-------CCCCCEEEEE-TTEEEEECGGGGE
T ss_pred             CCCceEEEECCCCcEeCCHHHHHHHHHhCCCcEE---cCCCCEEEEECC-------CCCCcEEEEE-CCEEEEECHHHee
Confidence            6678899999999999999999999866532211   111111112455       3689999999 5799999999998


Q ss_pred             EeecCCcceEEEE-EEecC-CCceeEcceeeeeeEEEEeCCCCEEEEeec
Q 009271          410 FPENEGFTVFCLT-VMSTD-GDYGIIGQNFMMGHRIVFDRENLKLAWSHS  457 (538)
Q Consensus       410 ~~~~~~~~~~Cl~-i~~~~-~~~~IlG~~fl~~~yvVFD~e~~rIGfa~~  457 (538)
                      +...+.....|++ |+..+ .+.||||+.|||++|+|||++++|||||+.
T Consensus       280 ~~~~~~~~~~C~~~i~~~~~~~~~ILG~~fl~~~y~vfD~~~~riGfA~~  329 (329)
T 3c9x_A          280 LTPLEEGSSTCFGGLQSSSGIGINIFGDVALKAALVVFDLGNERLGWAQK  329 (329)
T ss_dssp             EEESSTTCSEEEESEEECTTTTSEEECHHHHTTEEEEEETTTTEEEEEEC
T ss_pred             eeccCCCCCeEEEEEEcCCCCCcEEEChHHhccEEEEEECCCCEEeEecC
Confidence            8753322479975 67654 458999999999999999999999999973


No 19 
>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A
Probab=100.00  E-value=1.1e-53  Score=439.62  Aligned_cols=298  Identities=23%  Similarity=0.415  Sum_probs=246.2

Q ss_pred             eeccccccEEEEEEEecCCCeEEEEEEEcCCCceeEecC-CCC--CCCCccccccccCCCCCCCCCCCCCCCccccCCCC
Q 009271          101 FFGNQFYWLHYTWIDIGTPNVSFLVALDAGSNLLWVPCQ-CIQ--CAPLSASYYTSLDRNLSEYDPSSSSSSKNVSCSHP  177 (538)
Q Consensus       101 ~~~~~~~~~yy~~v~iGtP~q~~~v~lDTGS~~~Wv~c~-C~~--C~~~~~~~~~~~~~~~~~f~ps~SsT~~~~~C~~~  177 (538)
                      ++. +.+..||++|.||||+|+|.|++||||+++||+|. |..  |..            ++.|+|++|+|++...    
T Consensus         6 ~l~-~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~lWv~~~~C~~~~C~~------------~~~y~~~~SsT~~~~~----   68 (329)
T 1htr_B            6 PMA-YMDAAYFGEISIGTPPQNFLVLFDTGSSNLWVPSVYCQSQACTS------------HSRFNPSESSTYSTNG----   68 (329)
T ss_dssp             GGG-GTTCCEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSHHHHT------------SCCBCGGGCTTCEEEE----
T ss_pred             eeE-EcCCEEEEEEEECCCCcEEEEEEcCCCccEEEecCCCCCcccCC------------CCcCCCccCCCeEECC----
Confidence            344 66778999999999999999999999999999998 753  543            3689999999999763    


Q ss_pred             CCCCCCCCCCCCCCCceeEecCCCCceEEEEEEEEEEEeccCCCCCCCccccccEEEEEEEeecCCCCCCCCCceEEeeC
Q 009271          178 LCKSRSSCKSLKDPCPYIADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLG  257 (538)
Q Consensus       178 ~C~~~~~C~~~~~~c~y~~~Y~dg~ss~~G~l~~D~v~l~~~~~~~~~~~~~~~~~fGc~~~~~g~~~~~~~~dGIlGLG  257 (538)
                                    |.|.+.|++| + +.|.+++|+|+|++.        ...++.|||++.+.+.++.....|||||||
T Consensus        69 --------------~~~~i~Yg~g-s-~~G~~~~D~v~~g~~--------~~~~~~fg~~~~~~~~~~~~~~~~GilGLg  124 (329)
T 1htr_B           69 --------------QTFSLQYGSG-S-LTGFFGYDTLTVQSI--------QVPNQEFGLSENEPGTNFVYAQFDGIMGLA  124 (329)
T ss_dssp             --------------EEEEEEETTE-E-EEEEEEEEEEEETTE--------EEEEEEEEEESSCSSGGGGGCSCCEEEECC
T ss_pred             --------------cEEEEEeCCC-C-eEEEEEeeeEEEcce--------EECceEEEEEEEccccccccCCCceEEecC
Confidence                          8999999996 4 599999999999864        367899999998877543334679999999


Q ss_pred             CCCC------ChHHHHHhcCCCC-CceEEeecCCC---CccEEeCCCCCCCc----eeeeeeecCCCCceEEEeEeEEEE
Q 009271          258 LGDV------SVPSLLAKAGLIQ-NSFSICFDEND---SGSVFFGDQGPATQ----QSTSFLPIGEKYDAYFVGVESYCI  323 (538)
Q Consensus       258 ~~~~------Sl~sqL~~~g~i~-~~FS~cl~~~~---~G~l~fG~~d~~~~----~~tplv~~~~~~~~y~V~l~~i~V  323 (538)
                      +..+      +++++|+++|+|. ++||+||.++.   .|.|+||++|+.++    .|+|++.    ..+|.|.+++|.|
T Consensus       125 ~~~~s~~~~~~~~~~l~~qg~i~~~~Fs~~L~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~~~v~l~~i~v  200 (329)
T 1htr_B          125 YPALSVDEATTAMQGMVQEGALTSPVFSVYLSNQQGSSGGAVVFGGVDSSLYTGQIYWAPVTQ----ELYWQIGIEEFLI  200 (329)
T ss_dssp             CCSCCCTTCCSHHHHHHHTTCSSSSEEEEEECSSCSSEEEEEEESSCCGGGEEEEEEEEEBCS----SSSCEEEECEEEE
T ss_pred             CCcccccCCCCHHHHHHhcCCCCCCEEEEEEcCCCCCCCcEEEEcccCHHHcCCceEEEECCC----CceEEEEEeEEEE
Confidence            9875      4788999999996 99999998763   79999999998865    3888853    3689999999999


Q ss_pred             CCeEee--cCCceEEEcCCCccccccHHHHHHHHHHHHHhhcccccccccccccccccccccccccCccEEEEEcCCeee
Q 009271          324 GNSCLT--QSGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMRLIFSKNQSF  401 (538)
Q Consensus       324 gg~~l~--~~~~~aiiDSGTs~t~LP~~~y~~l~~~~~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~it~~f~gg~~~  401 (538)
                      |++.+.  .....+||||||++++||+++|++|.+++.+...     ........|+.     ...+|+|+|+| ||.++
T Consensus       201 ~~~~~~~~~~~~~aiiDSGTt~~~lp~~~~~~l~~~~~~~~~-----~~g~~~~~C~~-----~~~~P~i~f~f-~g~~~  269 (329)
T 1htr_B          201 GGQASGWCSEGCQAIVDTGTSLLTVPQQYMSALLQATGAQED-----EYGQFLVNCNS-----IQNLPSLTFII-NGVEF  269 (329)
T ss_dssp             TTEECCTTTTCEEEEECTTCCSEEEEGGGHHHHHHHHTCEEC-----TTSCEEECGGG-----GGGSCCEEEEE-TTEEE
T ss_pred             CCceeeecCCCceEEEecCCccEECCHHHHHHHHHHhCCeec-----CCCeEEEeCCC-----cccCCcEEEEE-CCEEE
Confidence            998864  3567899999999999999999999988754321     11112234554     35789999999 67999


Q ss_pred             eeecceeEEeecCCcceEEE-EEEecC-----CC-ceeEcceeeeeeEEEEeCCCCEEEEeecC
Q 009271          402 VVRNHIFSFPENEGFTVFCL-TVMSTD-----GD-YGIIGQNFMMGHRIVFDRENLKLAWSHSK  458 (538)
Q Consensus       402 ~v~~~~y~~~~~~~~~~~Cl-~i~~~~-----~~-~~IlG~~fl~~~yvVFD~e~~rIGfa~~~  458 (538)
                      .|++++|++...   + .|+ +|+..+     ++ .||||+.||+++|+|||++++|||||+++
T Consensus       270 ~i~~~~y~~~~~---g-~C~~~~~~~~~~~~~~~~~~iLG~~fl~~~yvvfD~~~~~igfa~~~  329 (329)
T 1htr_B          270 PLPPSSYILSNN---G-YCTVGVEPTYLSSQNGQPLWILGDVFLRSYYSVYDLGNNRVGFATAA  329 (329)
T ss_dssp             EECHHHHEEECS---S-CEEESEEEECCCCTTSSCEEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred             EECHHHhcccCC---C-EEEEEEEECCCCCCCCCceEEEChHHhccEEEEEECCCCEEEEEeCC
Confidence            999999998864   3 896 687653     34 79999999999999999999999999864


No 20 
>2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A* 2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A* 3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A 2zhs_A 2zhr_A 2zhu_A ...
Probab=100.00  E-value=4.4e-53  Score=445.87  Aligned_cols=322  Identities=17%  Similarity=0.217  Sum_probs=255.2

Q ss_pred             cccccEEEEEEEecCCCeEEEEEEEcCCCceeEecC-CCCCCCCccccccccCCCCCCCCCCCCCCCccccCCCCCCCCC
Q 009271          104 NQFYWLHYTWIDIGTPNVSFLVALDAGSNLLWVPCQ-CIQCAPLSASYYTSLDRNLSEYDPSSSSSSKNVSCSHPLCKSR  182 (538)
Q Consensus       104 ~~~~~~yy~~v~iGtP~q~~~v~lDTGS~~~Wv~c~-C~~C~~~~~~~~~~~~~~~~~f~ps~SsT~~~~~C~~~~C~~~  182 (538)
                      +..+..||++|.||||+|+|.|+|||||+++||+|. |..|              ++.|+|++|+|++.+.         
T Consensus        17 ~~~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~c~~~--------------~~~y~~~~SsT~~~~~---------   73 (395)
T 2qp8_A           17 GKSGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFL--------------HRYYQRQLSSTYRDLR---------   73 (395)
T ss_dssp             EETTTEEEEEEEETTTTEEEEEEEETTCCCEEEECSCCTTC--------------SCCCCGGGCTTCEEEE---------
T ss_pred             CCCCceEEEEEEecCCCceEEEEEecCCCceEEECCCCccc--------------cCCcCcccCCCceeCC---------
Confidence            445678999999999999999999999999999997 7544              3689999999999764         


Q ss_pred             CCCCCCCCCCceeEecCCCCceEEEEEEEEEEEeccCCCCCCCccccccEEEEEEEeecCCCCCCCCCceEEeeCCCCC-
Q 009271          183 SSCKSLKDPCPYIADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDV-  261 (538)
Q Consensus       183 ~~C~~~~~~c~y~~~Y~dg~ss~~G~l~~D~v~l~~~~~~~~~~~~~~~~~fGc~~~~~g~~~~~~~~dGIlGLG~~~~-  261 (538)
                               |.|.+.|++| + ++|.+++|+|+|++..      .+...+.|+|.....+.|......|||||||+..+ 
T Consensus        74 ---------~~~~i~Yg~G-s-~~G~~~~Dtv~ig~g~------~~~~~~~~~~~~~~~~~f~~~~~~dGIlGLg~~~~s  136 (395)
T 2qp8_A           74 ---------KGVYVPYTQG-K-WEGELGTDLVSIPHGP------NVTVRANIAAITESDKFFINGSNWEGILGLAYAEIA  136 (395)
T ss_dssp             ---------EEEEEECSSC-E-EEEEEEEEEEECTTSC------SCEEEEEEEEEEEEESCSCTTCCCCEEEECSCGGGC
T ss_pred             ---------ceEEEEECCc-E-EEEEEEeEEEEECCCC------CceEEEEEEEEEccCcccccccCccceEEcCchhhc
Confidence                     8899999996 4 5899999999998421      12234778888877666644346799999998765 


Q ss_pred             -------ChHHHHHhcCCCCCceEEeecC------------CCCccEEeCCCCCCCc----eeeeeeecCCCCceEEEeE
Q 009271          262 -------SVPSLLAKAGLIQNSFSICFDE------------NDSGSVFFGDQGPATQ----QSTSFLPIGEKYDAYFVGV  318 (538)
Q Consensus       262 -------Sl~sqL~~~g~i~~~FS~cl~~------------~~~G~l~fG~~d~~~~----~~tplv~~~~~~~~y~V~l  318 (538)
                             +++.+|+++++|+++||+||.+            ...|.|+||++|+.++    .|+|++.    ..+|.|.|
T Consensus       137 ~~~~~~~~~~~~l~~q~~i~~~FS~~L~~~~~~~~~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~~~v~l  212 (395)
T 2qp8_A          137 RPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGSLWYTPIRR----EWYYEVII  212 (395)
T ss_dssp             SSCTTSCCHHHHHHHHSCCCSCEEEEECCCSSCCCHHHHHHSCCEEEEETSCCGGGEEEEEEEEECCS----BTTBBCCE
T ss_pred             cCCCCCCCHHHHHHHccCCcceEEEEeccccccccccccccCCCcEEEECCcCcccccCceEEeccCC----CceEEEEE
Confidence                   4667999999998999999964            2579999999998765    3788854    36899999


Q ss_pred             eEEEECCeEeec-----CCceEEEcCCCccccccHHHHHHHHHHHHHhhcccccccc--cccccccccccccccccCccE
Q 009271          319 ESYCIGNSCLTQ-----SGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQ--GNSWKYCYNASSEEMLKVPDM  391 (538)
Q Consensus       319 ~~i~Vgg~~l~~-----~~~~aiiDSGTs~t~LP~~~y~~l~~~~~~~~~~~~~~~~--~~~~~~Cy~~~~~~~~~~P~i  391 (538)
                      ++|.||++.+..     ....+||||||++++||+++|++|.++|.+..........  ......|+.........+|+|
T Consensus       213 ~~i~v~g~~~~~~~~~~~~~~aiiDSGTt~~~lP~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i  292 (395)
T 2qp8_A          213 VRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVI  292 (395)
T ss_dssp             EEEEETTEECCCCGGGGGSSCEEECTTCCSEEEEHHHHHHHHHHHHHHTTTSCCCHHHHTTCSCEEESTTCCCGGGSCCE
T ss_pred             EEEEECCEEcccCccccCCceEEEEcCCCcEecCHHHHHHHHHHHhhhcccccCCccccccccccccccccchHhhCCcE
Confidence            999999998753     1357999999999999999999999999876543221100  011346887654444579999


Q ss_pred             EEEEcCCe-----eeeeecceeEEeecC--CcceEEE--EEEecCCCceeEcceeeeeeEEEEeCCCCEEEEeecCCCcc
Q 009271          392 RLIFSKNQ-----SFVVRNHIFSFPENE--GFTVFCL--TVMSTDGDYGIIGQNFMMGHRIVFDRENLKLAWSHSKCEEV  462 (538)
Q Consensus       392 t~~f~gg~-----~~~v~~~~y~~~~~~--~~~~~Cl--~i~~~~~~~~IlG~~fl~~~yvVFD~e~~rIGfa~~~C~~~  462 (538)
                      +|+|.|+.     ++.+++++|++...+  +....|+  ++.+.+ +.||||+.|||++|+|||++++|||||+++|.+.
T Consensus       293 ~f~f~g~~~~~~~~~~l~p~~yi~~~~~~~~~~~~C~~~~i~~~~-~~~ILG~~fl~~~yvvfD~~~~rIGfA~~~c~~~  371 (395)
T 2qp8_A          293 SLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSS-TGTVMGAVIMEGFYVVFDRARKRIGFAVSACHVH  371 (395)
T ss_dssp             EEEEECSSTTEEEEEEECHHHHEEEECCTTCCSCEEEEECEEEES-SCEEECHHHHTTEEEEEETTTTEEEEEEETTCCC
T ss_pred             EEEEccCCCCceEEEEECHHHhEeecccCCCCCceEEEEEecCCC-CcEEEChHHhCCeeEEEECCCCEEEEEeccCCCC
Confidence            99997763     689999999987643  1235896  566543 5799999999999999999999999999999976


Q ss_pred             cccccccC
Q 009271          463 IDKSHVHL  470 (538)
Q Consensus       463 ~~~~~~~~  470 (538)
                      ++...++.
T Consensus       372 ~~~~i~~i  379 (395)
T 2qp8_A          372 DEFRTAAV  379 (395)
T ss_dssp             CSSCCCEE
T ss_pred             CCCcccee
Confidence            66544444


No 21 
>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ...
Probab=100.00  E-value=3.7e-53  Score=435.78  Aligned_cols=301  Identities=18%  Similarity=0.281  Sum_probs=243.9

Q ss_pred             ccccEEEEEEEecCCCeEEEEEEEcCCCceeEecC-CCCCCCCccccccccCCCCCCCCCCCCCCCccccCCCCCCCCCC
Q 009271          105 QFYWLHYTWIDIGTPNVSFLVALDAGSNLLWVPCQ-CIQCAPLSASYYTSLDRNLSEYDPSSSSSSKNVSCSHPLCKSRS  183 (538)
Q Consensus       105 ~~~~~yy~~v~iGtP~q~~~v~lDTGS~~~Wv~c~-C~~C~~~~~~~~~~~~~~~~~f~ps~SsT~~~~~C~~~~C~~~~  183 (538)
                      ..+..|+++|.||||+|+|.|++||||+++||+|. |..|..           ..+.|+|++|+|++.++          
T Consensus        12 ~~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~C~~~~~-----------~~~~y~~~~SsT~~~~~----------   70 (329)
T 1oew_A           12 SLDDAYITPVQIGTPAQTLNLDFDTGSSDLWVFSSETTASEV-----------XQTIYTPSKSTTAKLLS----------   70 (329)
T ss_dssp             TTCCCEEEEEEETTTTEEEEEEEETTCCCEEECBTTSCGGGC------------CCCBCGGGCTTCEEEE----------
T ss_pred             CCCCEEEEEEEECCCCeEEEEEECCCCCCeEEecCCCCcccc-----------ccCccCCccCccceecC----------
Confidence            35678999999999999999999999999999998 877743           24689999999999864          


Q ss_pred             CCCCCCCCCceeEecCCCCceEEEEEEEEEEEeccCCCCCCCccccccEEEEEEEeecCCCCCCCCCceEEeeCCCCCC-
Q 009271          184 SCKSLKDPCPYIADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVS-  262 (538)
Q Consensus       184 ~C~~~~~~c~y~~~Y~dg~ss~~G~l~~D~v~l~~~~~~~~~~~~~~~~~fGc~~~~~g~~~~~~~~dGIlGLG~~~~S-  262 (538)
                             .|.|.+.|++| +.++|.+++|+|+|++.        ...++.|||++.+.+.|......|||||||+..++ 
T Consensus        71 -------~~~~~i~Yg~G-s~~~G~~~~D~v~~g~~--------~v~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~  134 (329)
T 1oew_A           71 -------GATWSISYGDG-SSSSGDVYTDTVSVGGL--------TVTGQAVESAKKVSSSFTEDSTIDGLLGLAFSTLNT  134 (329)
T ss_dssp             -------EEEEEEECTTS-CEEEEEEEEEEEEETTE--------EEEEEEEEEEEEECHHHHHCTTCCEEEECSCGGGCC
T ss_pred             -------CCeEEEEeCCC-CcEEEEEEEEEEEECCE--------EEeeeEEEEEEecCccccccCCCceEEEeccccccc
Confidence                   37899999996 67899999999999874        36889999999987766433367999999987654 


Q ss_pred             --------hHHHHHhcCCCCCceEEeecCCCCccEEeCCCCCCCc----eeeeeeecCCCCceEEEeEeEEEECCeEeec
Q 009271          263 --------VPSLLAKAGLIQNSFSICFDENDSGSVFFGDQGPATQ----QSTSFLPIGEKYDAYFVGVESYCIGNSCLTQ  330 (538)
Q Consensus       263 --------l~sqL~~~g~i~~~FS~cl~~~~~G~l~fG~~d~~~~----~~tplv~~~~~~~~y~V~l~~i~Vgg~~l~~  330 (538)
                              ++++|+++ +-+++||+||.++..|.|+||++|+.++    .|+|++..   ..+|.|.+++|.||++.+..
T Consensus       135 ~~~~~~~~~~~~l~~~-i~~~~FS~~L~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~---~~~~~v~l~~i~v~~~~~~~  210 (329)
T 1oew_A          135 VSPTQQKTFFDNAKAS-LDSPVFTADLGYHAPGTYNFGFIDTTAYTGSITYTAVSTK---QGFWEWTSTGYAVGSGTFKS  210 (329)
T ss_dssp             CBSSCCCCHHHHHTTT-SSSSEEEEECCSSSCEEEEESCCCTTSSSSCCEEEECBCT---TSSCEEEEEEEEETTSCCEE
T ss_pred             cCcCCCCCHHHHHHHh-ccCcEEEEEccCCCCeEEEEeccChHhcccceEEEEccCC---CceEEEEEeeEEECCeeccC
Confidence                    66888876 3359999999987789999999998765    48998642   36899999999999988765


Q ss_pred             CCceEEEcCCCccccccHHHHHHHHHHHHHhhcccccccccccccccccccccccccCccEEEEEcCCeeeeeecceeEE
Q 009271          331 SGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMRLIFSKNQSFVVRNHIFSF  410 (538)
Q Consensus       331 ~~~~aiiDSGTs~t~LP~~~y~~l~~~~~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~it~~f~gg~~~~v~~~~y~~  410 (538)
                      ..+.+||||||++++||+++|++|.+++....   ...........|+       ..+|+|+|+| ||.++.|++++|++
T Consensus       211 ~~~~aiiDSGTt~~~lP~~~~~~l~~~i~~a~---~~~~~g~~~~~C~-------~~~P~i~f~f-gg~~~~ip~~~~~~  279 (329)
T 1oew_A          211 TSIDGIADTGTTLLYLPATVVSAYWAQVSGAK---SSSSVGGYVFPCS-------ATLPSFTFGV-GSARIVIPGDYIDF  279 (329)
T ss_dssp             EEEEEEECTTCCSEEECHHHHHHHHTTSTTCE---EETTTTEEEEETT-------CCCCCEEEEE-TTEEEEECHHHHEE
T ss_pred             CCceEEEeCCCCCEECCHHHHHHHHHhCCCcE---EcCCCCEEEEECC-------CCCCcEEEEE-CCEEEEECHHHeee
Confidence            66789999999999999999999987653221   1111111113455       3689999999 78999999999988


Q ss_pred             eecCCcceEEEE-EEecC-CCceeEcceeeeeeEEEEeC-CCCEEEEeec
Q 009271          411 PENEGFTVFCLT-VMSTD-GDYGIIGQNFMMGHRIVFDR-ENLKLAWSHS  457 (538)
Q Consensus       411 ~~~~~~~~~Cl~-i~~~~-~~~~IlG~~fl~~~yvVFD~-e~~rIGfa~~  457 (538)
                      ...+.....|++ |+..+ .+.||||+.|||++|+|||+ +++|||||+.
T Consensus       280 ~~~~~~~~~C~~~i~~~~~~~~~iLG~~fl~~~y~vfD~~~~~riGfA~~  329 (329)
T 1oew_A          280 GPISTGSSSCFGGIQSSAGIGINIFGDVALKAAFVVFNGATTPTLGFASK  329 (329)
T ss_dssp             EESSTTCSEEEESEEESTTTSSEEECHHHHTTEEEEEECSSSCEEEEEEC
T ss_pred             eecCCCCCeEEEEEEeCCCCCceEEChHHhcCEEEEEECCCCceEEEecC
Confidence            753222479975 66654 45899999999999999999 9999999974


No 22 
>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} SCOP: b.50.1.0 PDB: 3tne_A*
Probab=100.00  E-value=6.3e-53  Score=435.71  Aligned_cols=292  Identities=21%  Similarity=0.355  Sum_probs=244.7

Q ss_pred             ccEEEEEEEecCCCeEEEEEEEcCCCceeEe-----cC-CCCCCCCccccccccCCCCCCCCCCCCCCCccccCCCCCCC
Q 009271          107 YWLHYTWIDIGTPNVSFLVALDAGSNLLWVP-----CQ-CIQCAPLSASYYTSLDRNLSEYDPSSSSSSKNVSCSHPLCK  180 (538)
Q Consensus       107 ~~~yy~~v~iGtP~q~~~v~lDTGS~~~Wv~-----c~-C~~C~~~~~~~~~~~~~~~~~f~ps~SsT~~~~~C~~~~C~  180 (538)
                      +..||++|.||||||++.|++||||+++||+     |. |..|..            .+.|+|++|+|++.+.       
T Consensus        11 ~~~Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~~~~~~C~~~~~C~~------------~~~y~~~~SsT~~~~~-------   71 (339)
T 3fv3_A           11 GPSYASKVSVGSNKQQQTVIIDTGSSDFWVVDSNAQCGKGVDCKS------------SGTFTPSSSSSYKNLG-------   71 (339)
T ss_dssp             SSSEEEEEEETTTTEEEEEEEETTCCCEEEEEEEEEECTTCCTTT------------TCCBCGGGCTTCEEEE-------
T ss_pred             CCEEEEEEEEcCCCcEEEEEEeCCCCceEEecCCCCCCCCCCCCC------------CCcCCCccCcceeeCC-------
Confidence            5689999999999999999999999999998     44 445542            4699999999999864       


Q ss_pred             CCCCCCCCCCCCceeEecCCCCceEEEEEEEEEEEeccCCCCCCCccccccEEEEEEEeecCCCCCCCCCceEEeeCCCC
Q 009271          181 SRSSCKSLKDPCPYIADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGD  260 (538)
Q Consensus       181 ~~~~C~~~~~~c~y~~~Y~dg~ss~~G~l~~D~v~l~~~~~~~~~~~~~~~~~fGc~~~~~g~~~~~~~~dGIlGLG~~~  260 (538)
                                 |.|.+.|++| +.+.|.+++|+|+|++.        ...++.|||++...+       .+||||||+..
T Consensus        72 -----------~~~~i~Yg~g-s~~~G~~~~D~v~~g~~--------~v~~~~fg~~~~~~~-------~~GilGLg~~~  124 (339)
T 3fv3_A           72 -----------AAFTIRYGDG-STSQGTWGKDTVTINGV--------SITGQQIADVTQTSV-------DQGILGIGYTS  124 (339)
T ss_dssp             -----------EEEEEECTTS-CEEEEEEEEEEEEETTE--------EEEEEEEEEEEEESS-------SSCEEECSCGG
T ss_pred             -----------ceEEEEECCC-ceEEEEEEEEEEEECCE--------EECceEEEEEEecCC-------CceeEEecCcc
Confidence                       8999999996 78999999999999874        368999999998764       48999999876


Q ss_pred             CC----------------hHHHHHhcCCCC-CceEEeecCC--CCccEEeCCCCCCCc----eeeeeeecCCCCceEEEe
Q 009271          261 VS----------------VPSLLAKAGLIQ-NSFSICFDEN--DSGSVFFGDQGPATQ----QSTSFLPIGEKYDAYFVG  317 (538)
Q Consensus       261 ~S----------------l~sqL~~~g~i~-~~FS~cl~~~--~~G~l~fG~~d~~~~----~~tplv~~~~~~~~y~V~  317 (538)
                      ++                ++.+|+++|+|+ ++||+||.+.  ..|.|+||++|+.++    .++|++..    .+|.|+
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~L~~~g~i~~~~fsl~l~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~----~~~~v~  200 (339)
T 3fv3_A          125 NEAVYDTSGRQTTPNYDNVPVTLKKQGKIRTNAYSLYLNSPSAETGTIIFGGVDNAKYSGKLVAEQVTSS----QALTIS  200 (339)
T ss_dssp             GCCCBCTTSCBCSCCCCCHHHHHHHTTSCSSSEEEEECCCTTCSEEEEEETEEETTSBSSCCEEEEBCCS----SSCEEE
T ss_pred             ccccccccccccCccCCcHHHHHHHCCCCCCceEEEEECCCCCCCeEEEEeeechHHeecceEEEecccC----ccEEEE
Confidence            53                899999999997 9999999875  479999999998865    48888642    589999


Q ss_pred             EeEEEECCeEeecCCceEEEcCCCccccccHHHHHHHHHHHHHhhcccccccccccccccccccccccccCccEEEEEcC
Q 009271          318 VESYCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMRLIFSK  397 (538)
Q Consensus       318 l~~i~Vgg~~l~~~~~~aiiDSGTs~t~LP~~~y~~l~~~~~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~it~~f~g  397 (538)
                      +++|.||++.+. ....+||||||++++||+++|++|.+++........ .........|+.      ..+|.|+|+|.+
T Consensus       201 l~~i~v~g~~~~-~~~~~iiDSGtt~~~lP~~~~~~i~~~~~~~~~~~~-~~~~~~~~~C~~------~~~p~i~f~f~~  272 (339)
T 3fv3_A          201 LASVNLKGSSFS-FGDGALLDSGTTLTYFPSDFAAQLADKAGARLVQVA-RDQYLYFIDCNT------DTSGTTVFNFGN  272 (339)
T ss_dssp             EEEEEESSCEEE-EEEEEEECTTBSSEEECHHHHHHHHHHHTCEEEEEE-TTEEEEEECTTC------CCCSEEEEEETT
T ss_pred             EEEEEECCEeec-CCccEEEeCCCCCEecCHHHHHHHHHHcCCEEcccc-ccCceEEEecCC------CCCCcEEEEECC
Confidence            999999999887 346799999999999999999999998875443110 011112234553      357999999976


Q ss_pred             CeeeeeecceeEEeecCCcceEE-EEEEecCCCceeEcceeeeeeEEEEeCCCCEEEEeecCCCc
Q 009271          398 NQSFVVRNHIFSFPENEGFTVFC-LTVMSTDGDYGIIGQNFMMGHRIVFDRENLKLAWSHSKCEE  461 (538)
Q Consensus       398 g~~~~v~~~~y~~~~~~~~~~~C-l~i~~~~~~~~IlG~~fl~~~yvVFD~e~~rIGfa~~~C~~  461 (538)
                      |.++.|++++|++...   ...| ++|++  .+.||||+.|||++|+|||++++|||||+++|++
T Consensus       273 g~~~~v~~~~~~~~~~---~~~C~~~i~~--~~~~ilG~~fl~~~y~vfD~~~~~igfA~~~~~~  332 (339)
T 3fv3_A          273 GAKITVPNTEYVYQNG---DGTCLWGIQP--SDDTILGDNFLRHAYLLYNLDANTISIAQVKYTT  332 (339)
T ss_dssp             SCEEEEEGGGGEEECS---SSCEEESEEE--CSSCEECHHHHTTEEEEEETTTTEEEEEEBCCCS
T ss_pred             CCEEEECHHHheeeCC---CCeEEEEEEe--CCcEEeChHHHhCEEEEEECCCCEEEEEecCCCC
Confidence            8999999999998753   3579 78887  3579999999999999999999999999999985


No 23 
>3vf3_A Beta-secretase 1; structure-based drug design, hydrolase-hydrolase inhibitor C; HET: 0GS; 1.48A {Homo sapiens} PDB: 2f3e_A* 2f3f_A* 1ym2_A* 3dv1_A* 3dv5_A* 3k5c_A* 3k5f_A* 3k5g_A* 3pi5_A* 3qbh_A* 3duy_A* 3veu_A* 3vg1_A* 4d83_A* 4d88_A* 4d89_A* 4d8c_A* 3msk_A* 3k5d_A* 1ym4_A* ...
Probab=100.00  E-value=3.5e-52  Score=440.04  Aligned_cols=321  Identities=17%  Similarity=0.216  Sum_probs=254.5

Q ss_pred             ccccEEEEEEEecCCCeEEEEEEEcCCCceeEecC-CCCCCCCccccccccCCCCCCCCCCCCCCCccccCCCCCCCCCC
Q 009271          105 QFYWLHYTWIDIGTPNVSFLVALDAGSNLLWVPCQ-CIQCAPLSASYYTSLDRNLSEYDPSSSSSSKNVSCSHPLCKSRS  183 (538)
Q Consensus       105 ~~~~~yy~~v~iGtP~q~~~v~lDTGS~~~Wv~c~-C~~C~~~~~~~~~~~~~~~~~f~ps~SsT~~~~~C~~~~C~~~~  183 (538)
                      ..+..||++|.||||||+|.|+|||||+++||+|. |  |.            .++.|+|++|+|++...          
T Consensus        25 ~~~~~Y~~~i~iGTP~q~~~v~~DTGSs~lWv~~~~c--~~------------~~~~y~~~~SsT~~~~~----------   80 (402)
T 3vf3_A           25 KSGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPH--PF------------LHRYYQRQLSSTYRDLR----------   80 (402)
T ss_dssp             ETTTEEEEEEEETTTTEEEEEEEETTCCCEEEECSCC--TT------------CSCCCCGGGCTTCEEEE----------
T ss_pred             CCCCEEEEEEEECCCCeEEEEEEeCCCCceEEccCCC--Cc------------ccCCcCcccCcccccCC----------
Confidence            34568999999999999999999999999999997 6  32            13689999999999764          


Q ss_pred             CCCCCCCCCceeEecCCCCceEEEEEEEEEEEeccCCCCCCCccccccEEEEEEEeecCCCCCCCCCceEEeeCCCCC--
Q 009271          184 SCKSLKDPCPYIADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDV--  261 (538)
Q Consensus       184 ~C~~~~~~c~y~~~Y~dg~ss~~G~l~~D~v~l~~~~~~~~~~~~~~~~~fGc~~~~~g~~~~~~~~dGIlGLG~~~~--  261 (538)
                              |.|.+.|++| + +.|.+++|+|+|++..      .+...+.|+|.....+.|......|||||||+..+  
T Consensus        81 --------~~~~i~Yg~G-s-~~G~~~~D~v~ig~~~------~~~~~~~~~~~~~~~~~~~~~~~~dGIlGLg~~~~s~  144 (402)
T 3vf3_A           81 --------KGVYVPYTQG-K-WEGELGTDLVSIPHGP------NVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR  144 (402)
T ss_dssp             --------EEEEEECSSC-E-EEEEEEEEEEECTTSC------SCEEEEEEEEEEEEESCSCTTCCCCEEEECSCGGGCS
T ss_pred             --------CEEEEEECcE-E-EEEEEEEEEEEECCcc------ccceeeeEEEEEccccccccCCCccceEEcCchhhcc
Confidence                    8999999996 4 6999999999998531      12235668998887777655457899999998754  


Q ss_pred             ------ChHHHHHhcCCCCCceEEeecC------------CCCccEEeCCCCCCCce----eeeeeecCCCCceEEEeEe
Q 009271          262 ------SVPSLLAKAGLIQNSFSICFDE------------NDSGSVFFGDQGPATQQ----STSFLPIGEKYDAYFVGVE  319 (538)
Q Consensus       262 ------Sl~sqL~~~g~i~~~FS~cl~~------------~~~G~l~fG~~d~~~~~----~tplv~~~~~~~~y~V~l~  319 (538)
                            +++.+|+++++|+++||+||.+            ...|.|+||++|+.++.    |+|++.    ..+|.|.++
T Consensus       145 ~~~~~~~~~~~L~~q~~i~~~FS~~l~~~~~~~~~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~w~v~l~  220 (402)
T 3vf3_A          145 PDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGSLWYTPIRR----EWYYEVIIV  220 (402)
T ss_dssp             SCTTSCCHHHHHHHHSCCCSCEEEEECCCC-------------EEEEESSCCGGGEEEEEEEEECSS----BTTBEECEE
T ss_pred             cCCcCCcHHHHHHHccCCccceEEEeecccccccccccccCCCCEEEeCCcCcccccCceEEEeCCc----CcEEEEEEe
Confidence                  5778999999998999999963            24799999999998764    788753    368999999


Q ss_pred             EEEECCeEeec-----CCceEEEcCCCccccccHHHHHHHHHHHHHhhcccccccc--cccccccccccccccccCccEE
Q 009271          320 SYCIGNSCLTQ-----SGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQ--GNSWKYCYNASSEEMLKVPDMR  392 (538)
Q Consensus       320 ~i~Vgg~~l~~-----~~~~aiiDSGTs~t~LP~~~y~~l~~~~~~~~~~~~~~~~--~~~~~~Cy~~~~~~~~~~P~it  392 (538)
                      +|.||++.+..     ....+||||||++++||+++|++|.++|.+..........  ......|+......+..+|+|+
T Consensus       221 ~i~v~g~~~~~~~~~~~~~~aiiDSGTt~~~lP~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~  300 (402)
T 3vf3_A          221 RVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVIS  300 (402)
T ss_dssp             EEEETTEECCCCGGGGGSSCEEECTTCCSEEEEHHHHHHHHHHHHHHTTTSCCCTTGGGTCSCEEEETTCCCGGGSCCEE
T ss_pred             EEEECCEEecccccccCCCeEEEECCCCcccCCHHHHHHHHHHHhhhccccccCccccccccccccccccchHhhCCceE
Confidence            99999998863     2457999999999999999999999999887543222111  1124578876544445799999


Q ss_pred             EEEcCCe-----eeeeecceeEEeecCC--cceEEEE--EEecCCCceeEcceeeeeeEEEEeCCCCEEEEeecCCCccc
Q 009271          393 LIFSKNQ-----SFVVRNHIFSFPENEG--FTVFCLT--VMSTDGDYGIIGQNFMMGHRIVFDRENLKLAWSHSKCEEVI  463 (538)
Q Consensus       393 ~~f~gg~-----~~~v~~~~y~~~~~~~--~~~~Cl~--i~~~~~~~~IlG~~fl~~~yvVFD~e~~rIGfa~~~C~~~~  463 (538)
                      |+|.|+.     ++.|++++|++...+.  ....|++  +... .+.||||+.||+++|+|||++++|||||+++|.+.+
T Consensus       301 f~f~g~~~~~~~~~~l~~~~yi~~~~~~~~~~~~C~~~~~~~~-~~~~ILG~~fl~~~yvvfD~~~~rIGfA~~~c~~~~  379 (402)
T 3vf3_A          301 LYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQS-STGTVMGAVIMEGFYVVFDRARKRIGFAVSACHVHD  379 (402)
T ss_dssp             EEEECSSTTEEEEEEECHHHHEEECCCGGGTTEEEEEECEEEE-SSCEEECHHHHTTEEEEEEGGGTEEEEEEETTCCBC
T ss_pred             EEEecCCCCceEEEEECHHHheehhccCCCCCceEEEEeccCC-CCcEEEChHHhCCeEEEEECCCCEEEEEecccCccc
Confidence            9997653     5899999999876532  1258975  3333 357999999999999999999999999999999876


Q ss_pred             ccccccC
Q 009271          464 DKSHVHL  470 (538)
Q Consensus       464 ~~~~~~~  470 (538)
                      +...++.
T Consensus       380 ~~~i~~i  386 (402)
T 3vf3_A          380 EFRTAAV  386 (402)
T ss_dssp             SSCBCEE
T ss_pred             Ccccccc
Confidence            6544443


No 24 
>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 4fse_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A*
Probab=100.00  E-value=5.6e-52  Score=445.18  Aligned_cols=321  Identities=17%  Similarity=0.212  Sum_probs=257.4

Q ss_pred             cccccEEEEEEEecCCCeEEEEEEEcCCCceeEecC-CCCCCCCccccccccCCCCCCCCCCCCCCCccccCCCCCCCCC
Q 009271          104 NQFYWLHYTWIDIGTPNVSFLVALDAGSNLLWVPCQ-CIQCAPLSASYYTSLDRNLSEYDPSSSSSSKNVSCSHPLCKSR  182 (538)
Q Consensus       104 ~~~~~~yy~~v~iGtP~q~~~v~lDTGS~~~Wv~c~-C~~C~~~~~~~~~~~~~~~~~f~ps~SsT~~~~~C~~~~C~~~  182 (538)
                      +..+..||++|.||||+|+|.|+|||||+++||+|. |  |..            .+.|+|++|+||+...         
T Consensus        70 ~~~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWV~~~~c--c~~------------~~~y~~~~SsT~~~~~---------  126 (455)
T 3lpj_A           70 GKSGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPH--PFL------------HRYYQRQLSSTYRDLR---------  126 (455)
T ss_dssp             EETTTEEEEEEEETTTTEEEEEEEETTCCCEEEECSCC--TTC------------SCCCCGGGCTTCEEEE---------
T ss_pred             CCCCCEEEEEEEECCCCeEEEEEEcCCCcceEEecccc--ccc------------CCcccCCCCCCcccCC---------
Confidence            345678999999999999999999999999999998 6  422            3689999999999764         


Q ss_pred             CCCCCCCCCCceeEecCCCCceEEEEEEEEEEEeccCCCCCCCccccccEEEEEEEeecCCCCCCCCCceEEeeCCCCC-
Q 009271          183 SSCKSLKDPCPYIADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDV-  261 (538)
Q Consensus       183 ~~C~~~~~~c~y~~~Y~dg~ss~~G~l~~D~v~l~~~~~~~~~~~~~~~~~fGc~~~~~g~~~~~~~~dGIlGLG~~~~-  261 (538)
                               |.|.+.|++| + +.|.+++|+|+|++..      .+..++.|+|.....+.|......|||||||+..+ 
T Consensus       127 ---------~~~~i~Yg~G-s-~~G~~~~Dtv~ig~~~------~~~~~~~~~~~~~~~~~~~~~~~~dGIlGLg~~~~s  189 (455)
T 3lpj_A          127 ---------KGVYVPYTQG-K-WEGELGTDLVSIPHGP------NVTVRANIAAITESDKFFINGSNWEGILGLAYAEIA  189 (455)
T ss_dssp             ---------EEEEEECSSC-E-EEEEEEEEEEECTTSC------SCEEEEEEEEEEEEESCSCTTCCCCEEEECSCGGGC
T ss_pred             ---------ccEEEEeCCe-E-EEEEEEEEEEEECCCc------ceeeEEEEEEEEccCcccccCCCcceEEEeCccccc
Confidence                     8999999996 3 5999999999998531      12335779999888877755457899999998754 


Q ss_pred             -------ChHHHHHhcCCCCCceEEeecC------------CCCccEEeCCCCCCCce----eeeeeecCCCCceEEEeE
Q 009271          262 -------SVPSLLAKAGLIQNSFSICFDE------------NDSGSVFFGDQGPATQQ----STSFLPIGEKYDAYFVGV  318 (538)
Q Consensus       262 -------Sl~sqL~~~g~i~~~FS~cl~~------------~~~G~l~fG~~d~~~~~----~tplv~~~~~~~~y~V~l  318 (538)
                             +++++|+++++|+++||+||.+            ...|.|+||++|+.++.    |+|+..    ..+|.|.+
T Consensus       190 ~~~~~~~~~~~~L~~q~~i~~~FS~~L~~~~~~~~~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~w~v~l  265 (455)
T 3lpj_A          190 RPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGSLWYTPIRR----EWYYEVII  265 (455)
T ss_dssp             SSCTTSCCHHHHHHHHSCCCSCEEEEECCCSSCCCHHHHHHSCCEEEEETSCCGGGEEEEEEEEECCS----BTTBBCCE
T ss_pred             cccCCCCcHHHHHHHccCCCceeEEEeccccccccccccccCCCceEEECCcCcccccCceEEEecCC----CceeEEEE
Confidence                   5678999999998999999963            35799999999998763    788754    36899999


Q ss_pred             eEEEECCeEeecC-----CceEEEcCCCccccccHHHHHHHHHHHHHhhcccccccc--cccccccccccccccccCccE
Q 009271          319 ESYCIGNSCLTQS-----GFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQ--GNSWKYCYNASSEEMLKVPDM  391 (538)
Q Consensus       319 ~~i~Vgg~~l~~~-----~~~aiiDSGTs~t~LP~~~y~~l~~~~~~~~~~~~~~~~--~~~~~~Cy~~~~~~~~~~P~i  391 (538)
                      ++|.||++.+...     ...+||||||++++||+++|++|.++|.+.....+....  ......|+......+..+|+|
T Consensus       266 ~~i~v~g~~~~~~~~~~~~~~aiiDSGTt~~~lP~~~~~~i~~~i~~~~~~~~~~~~~~~g~~~~C~~~~~~~~~~~P~i  345 (455)
T 3lpj_A          266 VRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVI  345 (455)
T ss_dssp             EEEEETTEECCCCGGGGGSSCEEECTTSSSEEEEHHHHHHHHHHHHHHTTTSCCCHHHHTTCSCEEESTTCCCGGGSCCE
T ss_pred             eEEEECCEEccccccccCCCeEEEECCCcceeCCHHHHHHHHHHhhhhccccccCcccccCcceecccccCCchhcCCcE
Confidence            9999999988632     457999999999999999999999999887643221111  112467888765444569999


Q ss_pred             EEEEcCCe-----eeeeecceeEEeecCCc--ceEEEEE--EecCCCceeEcceeeeeeEEEEeCCCCEEEEeecCCCcc
Q 009271          392 RLIFSKNQ-----SFVVRNHIFSFPENEGF--TVFCLTV--MSTDGDYGIIGQNFMMGHRIVFDRENLKLAWSHSKCEEV  462 (538)
Q Consensus       392 t~~f~gg~-----~~~v~~~~y~~~~~~~~--~~~Cl~i--~~~~~~~~IlG~~fl~~~yvVFD~e~~rIGfa~~~C~~~  462 (538)
                      +|+|.|+.     ++.|++++|++...+..  ...|+++  .+. .+.||||+.||+++|+|||++++|||||+++|.+.
T Consensus       346 ~f~f~g~~~~~~~~~~l~~~~yi~~~~~~~~~~~~C~~f~~~~~-~~~~ILG~~fl~~~yvvfD~~~~rIGfA~~~c~~~  424 (455)
T 3lpj_A          346 SLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQS-STGTVMGAVIMEGFYVVFDRARKRIGFAVSACHVH  424 (455)
T ss_dssp             EEEEECSSTTEEEEEEECHHHHEEEECCTTCCSCEEEEECEEEE-SSCEEECHHHHTTEEEEEETTTTEEEEEEETTCCC
T ss_pred             EEEEcCCCcCceEEEEECHHHheEeccCCCCCCceEEEEeccCC-CCcEEEChHHhCCeEEEEECCCCEEEEEecccccc
Confidence            99997754     58999999998765421  2589763  333 35799999999999999999999999999999887


Q ss_pred             ccccccc
Q 009271          463 IDKSHVH  469 (538)
Q Consensus       463 ~~~~~~~  469 (538)
                      ++...+.
T Consensus       425 ~~~~i~~  431 (455)
T 3lpj_A          425 DEFRTAA  431 (455)
T ss_dssp             CSSCCCE
T ss_pred             cccCcce
Confidence            6554433


No 25 
>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A*
Probab=100.00  E-value=6.2e-53  Score=441.40  Aligned_cols=299  Identities=19%  Similarity=0.315  Sum_probs=247.3

Q ss_pred             eeeeccccccEEEEEEEecCCCeEEEEEEEcCCCceeEecC-CC--CCCCCccccccccCCCCCCCCCCCCCCCccccCC
Q 009271           99 THFFGNQFYWLHYTWIDIGTPNVSFLVALDAGSNLLWVPCQ-CI--QCAPLSASYYTSLDRNLSEYDPSSSSSSKNVSCS  175 (538)
Q Consensus        99 ~~~~~~~~~~~yy~~v~iGtP~q~~~v~lDTGS~~~Wv~c~-C~--~C~~~~~~~~~~~~~~~~~f~ps~SsT~~~~~C~  175 (538)
                      .+++.|+.+..||++|.||||||+|.|++||||+++||+|. |.  .|..            ++.|+|++|+|++...  
T Consensus        53 ~~pl~~~~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~C~~~~C~~------------~~~y~~~~SsT~~~~~--  118 (375)
T 1miq_A           53 VIELDDVANIMFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCNSSGCSI------------KNLYDSSKSKSYEKDG--  118 (375)
T ss_dssp             CCCGGGTBCEEEECCCEETTTTEECCEEEETTCCCEEEEBTTCCSSGGGG------------SCCBCGGGCTTCEEEE--
T ss_pred             eEEcccCCCCEEEEEEEECCCCeEEEEEEeCCCcceEEccCCCCcccccC------------CCcCCCccCCceEECC--
Confidence            35677788889999999999999999999999999999998 85  4543            4689999999999753  


Q ss_pred             CCCCCCCCCCCCCCCCCceeEecCCCCceEEEEEEEEEEEeccCCCCCCCccccccEEEEEEEe----ecCCCCCCCCCc
Q 009271          176 HPLCKSRSSCKSLKDPCPYIADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIGCGRK----QTGSYLDGAAPD  251 (538)
Q Consensus       176 ~~~C~~~~~C~~~~~~c~y~~~Y~dg~ss~~G~l~~D~v~l~~~~~~~~~~~~~~~~~fGc~~~----~~g~~~~~~~~d  251 (538)
                                      |.|.+.|++| + +.|.+++|+|+|++.        ...+ .|||++.    +. .|.. ...|
T Consensus       119 ----------------~~~~i~Yg~G-s-~~G~~~~Dtv~ig~~--------~v~~-~Fg~~~~~~~~~~-~f~~-~~~d  169 (375)
T 1miq_A          119 ----------------TKVDITYGSG-T-VKGFFSKDLVTLGHL--------SMPY-KFIEVTDTDDLEP-IYSS-VEFD  169 (375)
T ss_dssp             ----------------EEEEEEETTE-E-EEEEEEEEEEEETTE--------EEEE-EEEEEEECGGGTT-HHHH-SCCC
T ss_pred             ----------------cEEEEEeCCC-e-EEEEEEEEEEEEcCc--------eECc-EEEEEEecccccc-cccc-CCCc
Confidence                            8999999996 4 799999999999864        3567 9999998    54 3322 2579


Q ss_pred             eEEeeCCCCC------ChHHHHHhcCCCC-CceEEeecCC--CCccEEeCCCCCCCc----eeeeeeecCCCCceEEEeE
Q 009271          252 GVMGLGLGDV------SVPSLLAKAGLIQ-NSFSICFDEN--DSGSVFFGDQGPATQ----QSTSFLPIGEKYDAYFVGV  318 (538)
Q Consensus       252 GIlGLG~~~~------Sl~sqL~~~g~i~-~~FS~cl~~~--~~G~l~fG~~d~~~~----~~tplv~~~~~~~~y~V~l  318 (538)
                      ||||||++.+      +++.+|+++|+|. ++||+||.++  ..|.|+|||+|+.++    .|+|++.    ..+|.|.+
T Consensus       170 GilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~w~v~l  245 (375)
T 1miq_A          170 GILGLGWKDLSIGSIDPIVVELKNQNKIDNALFTFYLPVHDVHAGYLTIGGIEEKFYEGNITYEKLNH----DLYWQIDL  245 (375)
T ss_dssp             EEEECSSCCTTCSSCCCHHHHHHHTTSSSSSEEEEECCTTCTTEEEEEESSCCGGGEEEEEEEEEBSS----SSSSEEEE
T ss_pred             eEEeCCCCcccccCCCCHHHHHHhccCcCCCEEEEEecCCCCCCeEEEEcccCHHHcCCceEEEecCC----CceEEEEE
Confidence            9999999875      4788999999996 9999999875  479999999998765    3888853    36999999


Q ss_pred             eEEEECCeEeecCCceEEEcCCCccccccHHHHHHHHHHHHHhhcccccccccccccccccccccccccCccEEEEEcCC
Q 009271          319 ESYCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMRLIFSKN  398 (538)
Q Consensus       319 ~~i~Vgg~~l~~~~~~aiiDSGTs~t~LP~~~y~~l~~~~~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~it~~f~gg  398 (538)
                      + |.||++.+  ....+||||||++++||+++|++|.+++.+...    ...+.....|+.      ..+|+|+|+| ||
T Consensus       246 ~-i~v~g~~~--~~~~aiiDSGTs~~~lP~~~~~~l~~~~~~~~~----~~~g~~~~~C~~------~~~P~i~f~f-~g  311 (375)
T 1miq_A          246 D-VHFGKQTM--EKANVIVDSGTTTITAPSEFLNKFFANLNVIKV----PFLPFYVTTCDN------KEMPTLEFKS-AN  311 (375)
T ss_dssp             E-EEETTEEE--EEEEEEECTTBSSEEECHHHHHHHHHHHTCEEC----TTSSCEEEETTC------TTCCCEEEEC-SS
T ss_pred             E-EEECCEEc--ccceEEecCCCccEEcCHHHHHHHHHHhCCccc----CCCCeEEEECCC------CCCCcEEEEE-CC
Confidence            9 99999988  567899999999999999999999988865321    111122334654      4689999999 67


Q ss_pred             eeeeeecceeEEeecCCcceEEE-EEEecCC--CceeEcceeeeeeEEEEeCCCCEEEEeecC
Q 009271          399 QSFVVRNHIFSFPENEGFTVFCL-TVMSTDG--DYGIIGQNFMMGHRIVFDRENLKLAWSHSK  458 (538)
Q Consensus       399 ~~~~v~~~~y~~~~~~~~~~~Cl-~i~~~~~--~~~IlG~~fl~~~yvVFD~e~~rIGfa~~~  458 (538)
                      ..+.|++++|++...+.....|+ +|++.+.  +.||||+.||+++|+|||++++|||||+++
T Consensus       312 ~~~~l~~~~yi~~~~~~g~~~C~~~~~~~~~~~~~~ILG~~fl~~~yvvfD~~~~riGfA~~~  374 (375)
T 1miq_A          312 NTYTLEPEYYMNPILEVDDTLCMITMLPVDIDSNTFILGDPFMRKYFTVFDYDKESVGFAIAK  374 (375)
T ss_dssp             CEEEECGGGSEEESSSSSCSEEEESEEECCSSSSEEEECHHHHHHEEEEEETTTTEEEEEEEC
T ss_pred             EEEEECHHHhEeeccCCCCCeEEEEEEECCCCCCcEEECHHHhccEEEEEECCCCEEEEEEcC
Confidence            99999999999986532246895 8887763  689999999999999999999999999864


No 26 
>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} SCOP: b.50.1.2 PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A*
Probab=100.00  E-value=1.4e-52  Score=433.46  Aligned_cols=304  Identities=22%  Similarity=0.374  Sum_probs=245.7

Q ss_pred             cccEEEEEEEecCCCeEEEEEEEcCCCceeEecC---CCCCCCCccccccccCCCCCCCCCCCCCCCccccCCCCCCCCC
Q 009271          106 FYWLHYTWIDIGTPNVSFLVALDAGSNLLWVPCQ---CIQCAPLSASYYTSLDRNLSEYDPSSSSSSKNVSCSHPLCKSR  182 (538)
Q Consensus       106 ~~~~yy~~v~iGtP~q~~~v~lDTGS~~~Wv~c~---C~~C~~~~~~~~~~~~~~~~~f~ps~SsT~~~~~C~~~~C~~~  182 (538)
                      .+..||++|.||||||+|.|++||||+++||+|.   |..|.....   ...|..++.|+|++|+|++.+.         
T Consensus        10 ~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~~C~~~~~~~~---~~~C~~~~~y~~~~SsT~~~~~---------   77 (342)
T 3pvk_A           10 EQVTYAADITVGSNNQKLNVIVDTGSSDLWVPDVNVDCQVTYSDQT---ADFCKQKGTYDPSGSSASQDLN---------   77 (342)
T ss_dssp             CSSSEEEEEEETTTTEEEEEEEETTCCCEEEEEEEEEECCCSTTCC---TTGGGTTCCBCGGGCTTCEEEE---------
T ss_pred             CCcEEEEEEEEcCCCcEEEEEEECCCcceEEEcCCCCCcccccccc---cCCCCCCCcCCCccCcceeecC---------
Confidence            3568999999999999999999999999999975   655532210   0123346799999999999864         


Q ss_pred             CCCCCCCCCCceeEecCCCCceEEEEEEEEEEEeccCCCCCCCccccccEEEEEEEeecCCCCCCCCCceEEeeCCCC--
Q 009271          183 SSCKSLKDPCPYIADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGD--  260 (538)
Q Consensus       183 ~~C~~~~~~c~y~~~Y~dg~ss~~G~l~~D~v~l~~~~~~~~~~~~~~~~~fGc~~~~~g~~~~~~~~dGIlGLG~~~--  260 (538)
                               |.|.+.|++| +.+.|.+++|+|+|++.        ...++.|||++...       ..+||||||+..  
T Consensus        78 ---------~~~~i~Yg~g-s~~~G~~~~D~v~ig~~--------~v~~~~fg~~~~~~-------~~~GilGLg~~~~~  132 (342)
T 3pvk_A           78 ---------TPFKIGYGDG-SSSQGTLYKDTVGFGGV--------SIKNQVLADVDSTS-------IDQGILGVGYKTNE  132 (342)
T ss_dssp             ---------EEEEEECSSS-CEEEEEEEEEEEEETTE--------EEEEEEEEEEEEES-------SSSCEEECSCGGGC
T ss_pred             ---------CeEEEEecCC-CeEEEEEEEEEEEECCE--------EecceEEEEEEccC-------CCccEEEecCcccc
Confidence                     8999999996 77999999999999874        36889999998764       458999999987  


Q ss_pred             -----CChHHHHHhcCCCC-CceEEeecCC--CCccEEeCCCCCCCc----eeeeeeecCCCCceEEEeEeEEEECCeEe
Q 009271          261 -----VSVPSLLAKAGLIQ-NSFSICFDEN--DSGSVFFGDQGPATQ----QSTSFLPIGEKYDAYFVGVESYCIGNSCL  328 (538)
Q Consensus       261 -----~Sl~sqL~~~g~i~-~~FS~cl~~~--~~G~l~fG~~d~~~~----~~tplv~~~~~~~~y~V~l~~i~Vgg~~l  328 (538)
                           .+++.+|+++|+|. ++||+||.+.  ..|.|+||++|+.++    .++|++..    .+|.|.+++|.|+++.+
T Consensus       133 ~~~~~~~~~~~L~~qg~i~~~~fs~~l~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~----~~~~v~l~~i~v~g~~~  208 (342)
T 3pvk_A          133 AGGSYDNVPVTLKKQGVIAKNAYSLYLNSPDAATGQIIFGGVDNAKYSGSLIALPVTSD----RELRISLGSVEVSGKTI  208 (342)
T ss_dssp             SSCSSCCHHHHHHHTTSSSSSEEEEECCCTTCSEEEEEETEEETTSBSSCCEEEECCCS----SSCEEEEEEEEETTEEE
T ss_pred             ccccCCcHHHHHHhcCCCCCceEEEEeCCCCCCCcEEEECccCccceeeeeEEeecCcc----ceEEEEEeEEEECCEEe
Confidence                 47999999999997 9999999864  469999999999875    48888643    58999999999999998


Q ss_pred             ecCCceEEEcCCCccccccHHHHHHHHHHHHHhhcccccccccccccccccccccccccCccEEEEEcCCeeeeeeccee
Q 009271          329 TQSGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMRLIFSKNQSFVVRNHIF  408 (538)
Q Consensus       329 ~~~~~~aiiDSGTs~t~LP~~~y~~l~~~~~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~it~~f~gg~~~~v~~~~y  408 (538)
                      ......+||||||++++||+++|++|.+++........   ..   ..+|..+|.   .+|.|+|+|.+|.++.+++++|
T Consensus       209 ~~~~~~~iiDSGtt~~~lP~~~~~~i~~~~~~~~~~~~---~~---~~~~~~~C~---~~p~i~f~f~~g~~~~vp~~~~  279 (342)
T 3pvk_A          209 NTDNVDVLLDSGTTITYLQQDLADQIIKAFNGKLTQDS---NG---NSFYEVDCN---LSGDVVFNFSKNAKISVPASEF  279 (342)
T ss_dssp             EEEEEEEEECTTCSSEEECHHHHHHHHHHTTCEEEECT---TS---CEEEEECSC---CCSEEEEEESTTCEEEEEGGGG
T ss_pred             cCCCceEEEeCCCCCeecCHHHHHHHHHHcCCeecccC---CC---ceEEEEecC---CCCceEEEECCCCEEEEcHHHh
Confidence            86667899999999999999999999988865443211   00   124455554   2499999997678999999999


Q ss_pred             EEeecCCc---ceEEE-EEEecCCCceeEcceeeeeeEEEEeCCCCEEEEeecCCCc
Q 009271          409 SFPENEGF---TVFCL-TVMSTDGDYGIIGQNFMMGHRIVFDRENLKLAWSHSKCEE  461 (538)
Q Consensus       409 ~~~~~~~~---~~~Cl-~i~~~~~~~~IlG~~fl~~~yvVFD~e~~rIGfa~~~C~~  461 (538)
                      ++......   ...|+ ++...  +.||||+.|||++|+|||++++|||||+++|+.
T Consensus       280 ~~~~~~~~g~~~~~C~~~i~~~--~~~ilG~~fl~~~y~vfD~~~~~igfA~~~~~~  334 (342)
T 3pvk_A          280 AASLQGDDGQPYDKCQLLFDVN--DANILGDNFLRSAYIVYDLDDNEISLAQVKYTS  334 (342)
T ss_dssp             EEC----------CEEESEEEC--TTCEECHHHHTTEEEEEETTTTEEEEEEBCCCS
T ss_pred             eeeccccCCCcCCeeEEEEeeC--CCeEeCHHHHhcEEEEEECCCCEEEEEecCCCC
Confidence            98742211   26895 56553  579999999999999999999999999999985


No 27 
>1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen structure, hydrolase; 2.30A {Hordeum vulgare} SCOP: a.64.1.2 b.50.1.2
Probab=100.00  E-value=5.5e-53  Score=454.07  Aligned_cols=315  Identities=24%  Similarity=0.392  Sum_probs=251.2

Q ss_pred             ceeeeccccccEEEEEEEecCCCeEEEEEEEcCCCceeEecC-CC---CCCCCccccccccCCCCCCCCCCCCCCCcccc
Q 009271           98 QTHFFGNQFYWLHYTWIDIGTPNVSFLVALDAGSNLLWVPCQ-CI---QCAPLSASYYTSLDRNLSEYDPSSSSSSKNVS  173 (538)
Q Consensus        98 ~~~~~~~~~~~~yy~~v~iGtP~q~~~v~lDTGS~~~Wv~c~-C~---~C~~~~~~~~~~~~~~~~~f~ps~SsT~~~~~  173 (538)
                      ..+++.|+.+..||++|.||||||+|.|+|||||+++||+|. |.   .|..            ++.|+|++|+||+.. 
T Consensus        42 ~~~~l~n~~~~~Y~~~i~IGTP~Q~~~v~~DTGSs~lWV~~~~C~~~~~C~~------------~~~y~~~~SsT~~~~-  108 (478)
T 1qdm_A           42 DIVALKNYMNAQYFGEIGVGTPPQKFTVIFDTGSSNLWVPSAKCYFSIACYL------------HSRYKAGASSTYKKN-  108 (478)
T ss_dssp             CSGGGCCGGGCCEEEEEEETTTTEEEEEEEETTCCCCEEEBTTCCSCGGGGG------------SCCBCGGGCTTCBCC-
T ss_pred             ceEEeEeccCCEEEEEEEECCCCeEEEEEEcCCCcceEEecCCCCCCccccC------------CCCCCcccCCCeeeC-
Confidence            346677888899999999999999999999999999999997 74   4543            368999999999854 


Q ss_pred             CCCCCCCCCCCCCCCCCCCceeEecCCCCceEEEEEEEEEEEeccCCCCCCCccccccEEEEEEEeecCCCCCCCCCceE
Q 009271          174 CSHPLCKSRSSCKSLKDPCPYIADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGV  253 (538)
Q Consensus       174 C~~~~C~~~~~C~~~~~~c~y~~~Y~dg~ss~~G~l~~D~v~l~~~~~~~~~~~~~~~~~fGc~~~~~g~~~~~~~~dGI  253 (538)
                                       .|.|.+.|++| + ++|.+++|+|+|++.        ...++.|||++.+.+..+.....|||
T Consensus       109 -----------------~~~~~i~Yg~G-s-~~G~~~~Dtv~ig~~--------~v~~~~Fg~a~~~~~~~f~~~~~dGI  161 (478)
T 1qdm_A          109 -----------------GKPAAIQYGTG-S-IAGYFSEDSVTVGDL--------VVKDQEFIEATKEPGITFLVAKFDGI  161 (478)
T ss_dssp             -----------------CCEEEEEETTE-E-EEEEEEEEEEEETTE--------EEEEEEEEEEEECCBSHHHHCSSSEE
T ss_pred             -----------------CcEEEEEcCCC-C-eEEEEEEEEEEECCe--------EECCEEEEEEEecCCcccccccccce
Confidence                             48999999996 4 899999999999874        36789999999877642222367999


Q ss_pred             EeeCCCCCC------hHHHHHhcCCCC-CceEEeecCC----CCccEEeCCCCCCCc----eeeeeeecCCCCceEEEeE
Q 009271          254 MGLGLGDVS------VPSLLAKAGLIQ-NSFSICFDEN----DSGSVFFGDQGPATQ----QSTSFLPIGEKYDAYFVGV  318 (538)
Q Consensus       254 lGLG~~~~S------l~sqL~~~g~i~-~~FS~cl~~~----~~G~l~fG~~d~~~~----~~tplv~~~~~~~~y~V~l  318 (538)
                      ||||+..++      +..+|.++|+|+ ++||+||.++    ..|.|+||++|+.++    .|+|+..    ..+|.|.+
T Consensus       162 lGLg~~~~s~~~~~p~~~~l~~qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~~~G~l~~~pv~~----~~~w~v~l  237 (478)
T 1qdm_A          162 LGLGFKEISVGKAVPVWYKMIEQGLVSDPVFSFWLNRHVDEGEGGEIIFGGMDPKHYVGEHTYVPVTQ----KGYWQFDM  237 (478)
T ss_dssp             EECSCGGGCGGGCCCHHHHHTTTTCCSSSEEEEECCCC-----CEEEEETCCCTTSEEEEEEEEEEEE----ETTEEEEE
T ss_pred             ecccccccccCCCCcHHHHHHHCCCCCCCEEEEEeecCCCCCCCeEEEeCCcCHhhcCCCceEEeccC----CCeEEEEE
Confidence            999998876      467899999996 9999999874    479999999999876    3888864    36999999


Q ss_pred             eEEEECCeEeec--CCceEEEcCCCccccccHHHHHHHHHHHHHhh----------------------ccc-cc------
Q 009271          319 ESYCIGNSCLTQ--SGFQALVDSGASFTFLPTEIYAEVVVKFDKLV----------------------SSK-RI------  367 (538)
Q Consensus       319 ~~i~Vgg~~l~~--~~~~aiiDSGTs~t~LP~~~y~~l~~~~~~~~----------------------~~~-~~------  367 (538)
                      ++|.||++.+..  ....+||||||++++||+++|++|.++|.+..                      ... +.      
T Consensus       238 ~~i~v~g~~~~~~~~~~~aiiDTGTs~~~lP~~~~~~i~~~i~a~~~~s~~Ck~~v~~yg~~ii~~l~~~~~p~~vC~~i  317 (478)
T 1qdm_A          238 GDVLVGGKSTGFCAGGCAAIADSGTSLLAGPTAIITEINEKIGAAGVVSQECKTIVSQYGQQILDLLLAETQPKKICSQV  317 (478)
T ss_dssp             CCEEETTEECSTTTTCEEEEECSSCCSEEECHHHHHHHHHHHTCCCBCCHHHHHHHHHTHHHHHHHHHTTCCHHHHHHHT
T ss_pred             eEEEECCEEEeecCCCceEEEcCCCCceeCCHHHHHHHHHHhCccccccccccchhhhhhhHHHHhhhhccChhhhhccc
Confidence            999999998653  46789999999999999999999998885421                      000 00      


Q ss_pred             -----c-------------c--------------------------------------cccccccccc---------ccc
Q 009271          368 -----S-------------L--------------------------------------QGNSWKYCYN---------ASS  382 (538)
Q Consensus       368 -----~-------------~--------------------------------------~~~~~~~Cy~---------~~~  382 (538)
                           .             .                                      .....+.|+.         ++|
T Consensus       318 glC~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~C~~Ce~~v~~~~~~l~~n~t~~~I~~~~~~~C~~~~~~~g~~~v~C  397 (478)
T 1qdm_A          318 GLCTFDGTRGVSAGIRSVVDDEPVKSNGLRADPMCSACEMAVVWMQNQLAQNKTQDLILDYVNQLCNRLPSPMGESAVDC  397 (478)
T ss_dssp             TCC---------------------------CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTCBCCSSSCCEECG
T ss_pred             cccccCccccccccccccccccccccccccccccchHHHHHHHHHHHHHhccccHHHHHHHHHHHhhccCCCCCeEEeec
Confidence                 0             0                                      0001234544         345


Q ss_pred             cccccCccEEEEEcCCeeeeeecceeEEeecCCcceEEEE-EEecC-----CCceeEcceeeeeeEEEEeCCCCEEEEee
Q 009271          383 EEMLKVPDMRLIFSKNQSFVVRNHIFSFPENEGFTVFCLT-VMSTD-----GDYGIIGQNFMMGHRIVFDRENLKLAWSH  456 (538)
Q Consensus       383 ~~~~~~P~it~~f~gg~~~~v~~~~y~~~~~~~~~~~Cl~-i~~~~-----~~~~IlG~~fl~~~yvVFD~e~~rIGfa~  456 (538)
                      +....+|+|+|+| ||..|.+++++|++...++....|++ |+..+     ++.||||+.||++||+|||++|+|||||+
T Consensus       398 ~~~~~lP~i~f~~-gg~~~~l~p~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~ILGd~fl~~~y~vfD~~~~rIGfA~  476 (478)
T 1qdm_A          398 GSLGSMPDIEFTI-GGKKFALKPEEYILKVGEGAAAQCISGFTAMDIPPPRGPLWILGDVFMGPYHTVFDYGKLRIGFAK  476 (478)
T ss_dssp             GGGTTCCCEEEEE-TTEEEEECHHHHEEECSCGGGCCEEESEEECCCCTTSCSEEEECHHHHTTEEEEEETTTTEEEEEE
T ss_pred             ccccccccEEEEE-CCEEEEEChHHhEEEccCCCCCeEEEEEEeccCCCCCCCcEEECHHHhccEEEEEECCCCEEEEEe
Confidence            5556799999999 67999999999999865433568964 66432     35899999999999999999999999998


Q ss_pred             c
Q 009271          457 S  457 (538)
Q Consensus       457 ~  457 (538)
                      +
T Consensus       477 a  477 (478)
T 1qdm_A          477 A  477 (478)
T ss_dssp             E
T ss_pred             C
Confidence            6


No 28 
>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A*
Probab=100.00  E-value=7.4e-52  Score=441.63  Aligned_cols=300  Identities=19%  Similarity=0.301  Sum_probs=249.5

Q ss_pred             ceeeeccccccEEEEEEEecCCCeEEEEEEEcCCCceeEecC-C--CCCCCCccccccccCCCCCCCCCCCCCCCccccC
Q 009271           98 QTHFFGNQFYWLHYTWIDIGTPNVSFLVALDAGSNLLWVPCQ-C--IQCAPLSASYYTSLDRNLSEYDPSSSSSSKNVSC  174 (538)
Q Consensus        98 ~~~~~~~~~~~~yy~~v~iGtP~q~~~v~lDTGS~~~Wv~c~-C--~~C~~~~~~~~~~~~~~~~~f~ps~SsT~~~~~C  174 (538)
                      ..+++.|+.+..||++|.||||||++.|++||||+++||+|. |  ..|..            ++.|+|++|+|++..  
T Consensus       127 ~~~pL~n~~d~~Y~~~I~IGTPpQ~~~vi~DTGSs~lWV~s~~C~s~~C~~------------~~~ydps~SsT~~~~--  192 (451)
T 3qvc_A          127 DNVELKDLANVLSFGEAKLGDNGQKFNFLFHTASSNVWVPSIKCTSESCES------------KNHYDSSKSKTYEKD--  192 (451)
T ss_dssp             CCCCGGGGBCEEEEEEEEETTTTEEEEEEEESSBCSEEEEBTTCCSGGGTT------------SCCBCGGGCTTCEEE--
T ss_pred             CccceeecCCCEEEEEEEECCCCcEEEEEEcCCCccEEEecCCCCccccCC------------CCCCCCCCCcccccC--
Confidence            346777888999999999999999999999999999999998 8  35643            468999999999975  


Q ss_pred             CCCCCCCCCCCCCCCCCCceeEecCCCCceEEEEEEEEEEEeccCCCCCCCccccccEEEEEEEe----ecCCCCCCCCC
Q 009271          175 SHPLCKSRSSCKSLKDPCPYIADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIGCGRK----QTGSYLDGAAP  250 (538)
Q Consensus       175 ~~~~C~~~~~C~~~~~~c~y~~~Y~dg~ss~~G~l~~D~v~l~~~~~~~~~~~~~~~~~fGc~~~----~~g~~~~~~~~  250 (538)
                                      .|.|.+.|++| + +.|.+++|+|+|++.        ..+ +.|||++.    +.+ |.. ...
T Consensus       193 ----------------~~~f~i~YgdG-s-~~G~~~~Dtv~igg~--------~v~-~~Fg~a~~t~~~~~~-f~~-~~~  243 (451)
T 3qvc_A          193 ----------------DTPVKLTSKAG-T-ISGIFSKDLVTIGKL--------SVP-YKFIEMTEIVGFEPF-YSE-SDV  243 (451)
T ss_dssp             ----------------EEEEEEECSSE-E-EEEEEEEEEEEETTE--------EEE-EEEEEEEEEEECTTH-HHH-SCC
T ss_pred             ----------------CCEEEEEECCC-E-EEEEEEEEEEEECCE--------EEE-EEEEEEEeccccCCC-ccC-CCC
Confidence                            38999999996 4 999999999999875        356 99999998    666 432 257


Q ss_pred             ceEEeeCCCCC------ChHHHHHhcCCCC-CceEEeecCC--CCccEEeCCCCCCCce----eeeeeecCCCCceEEEe
Q 009271          251 DGVMGLGLGDV------SVPSLLAKAGLIQ-NSFSICFDEN--DSGSVFFGDQGPATQQ----STSFLPIGEKYDAYFVG  317 (538)
Q Consensus       251 dGIlGLG~~~~------Sl~sqL~~~g~i~-~~FS~cl~~~--~~G~l~fG~~d~~~~~----~tplv~~~~~~~~y~V~  317 (538)
                      |||||||++.+      +++++|.++|+|+ ++||+||.+.  ..|.|+|||+|+.++.    |+|+..    ..+|.|.
T Consensus       244 dGILGLg~~~~s~~~~~~~~~~L~~qg~I~~~~FS~~L~~~~~~~G~l~fGgiD~s~y~G~l~~~pv~~----~~~w~v~  319 (451)
T 3qvc_A          244 DGVFGLGWKDLSIGSIDPYIVELKTQNKIEQAVYSIYLPPENKNKGYLTIGGIEERFFDGPLNYEKLNH----DLMWQVD  319 (451)
T ss_dssp             CEEEECSSBCSSSSCCCCHHHHHHHTTSSSSSEEEEECCTTCTTEEEEEESSCCGGGEEEEEEEEECSS----TTSSEEE
T ss_pred             CEEEecCCCcccccCCCCHHHHHHHcCCCCCCEEEEEEcCCCCCCCEEEECCcchhhcCCceEEEEccc----CCeeEEE
Confidence            99999998764      6789999999996 9999999975  3699999999998753    788753    3789999


Q ss_pred             EeEEEECCeEeecCCceEEEcCCCccccccHHHHHHHHHHHHHhhcccccccccccccccccccccccccCccEEEEEcC
Q 009271          318 VESYCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMRLIFSK  397 (538)
Q Consensus       318 l~~i~Vgg~~l~~~~~~aiiDSGTs~t~LP~~~y~~l~~~~~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~it~~f~g  397 (538)
                      ++ |.||++  ......+||||||++++||+++|++|.+++.....    .     ...+|..+|. ...+|+|+|+| |
T Consensus       320 l~-I~Vgg~--~~~~~~aiiDSGTt~i~lP~~~~~~i~~~i~a~~~----~-----~~g~y~v~C~-~~~~P~itf~f-g  385 (451)
T 3qvc_A          320 LD-VHFGNV--SSKKANVILDSATSVITVPTEFFNQFVESASVFKV----P-----FLSLYVTTCG-NTKLPTLEYRS-P  385 (451)
T ss_dssp             EE-EEETTE--EEEEEEEEECTTBSSEEECHHHHHHHHTTTTCEEC----T-----TSSCEEEETT-CTTCCCEEEEE-T
T ss_pred             EE-EEECCc--cCCCceEEEeCCCccccCCHHHHHHHHHHcCCeec----C-----CCCeEEeeCC-cCcCCcEEEEE-C
Confidence            99 999998  33567799999999999999999999876643211    1     1224556666 56789999999 6


Q ss_pred             CeeeeeecceeEEeecCCcceEEE-EEEecC--CCceeEcceeeeeeEEEEeCCCCEEEEeecC
Q 009271          398 NQSFVVRNHIFSFPENEGFTVFCL-TVMSTD--GDYGIIGQNFMMGHRIVFDRENLKLAWSHSK  458 (538)
Q Consensus       398 g~~~~v~~~~y~~~~~~~~~~~Cl-~i~~~~--~~~~IlG~~fl~~~yvVFD~e~~rIGfa~~~  458 (538)
                      |..+.|++++|++...+.....|+ ++++.+  .+.||||++||+++|+|||++++|||||+++
T Consensus       386 g~~i~lp~~~yi~~~~~~~~~~C~~~i~~~~~~~~~~ILG~~FLr~~YvVfD~~n~rIGfA~ak  449 (451)
T 3qvc_A          386 NKVYTLEPKQYLEPLENIFSALCMLNIVPIDLEKNTFVLGDPFMRKYFTVYDYDNHTVGFALAK  449 (451)
T ss_dssp             TEEEEECHHHHEEECTTTSTTEEEECEEECCCSTTEEEECHHHHHHEEEEEETTTTEEEEEEEC
T ss_pred             CEEEEEcHHHheeecccCCCCeEEEEEEeCCCCCCCEEECHHHhhcEEEEEECCCCEEEEEEcc
Confidence            799999999999986532357895 677766  4689999999999999999999999999974


No 29 
>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A*
Probab=100.00  E-value=9.3e-52  Score=425.51  Aligned_cols=299  Identities=18%  Similarity=0.244  Sum_probs=245.2

Q ss_pred             eeccccccEEEEEEEecCCCeEEEEEEEcCCCceeEecC-CC--CCCCCccccccccCCCCCCCCCCCCCCCccccCCCC
Q 009271          101 FFGNQFYWLHYTWIDIGTPNVSFLVALDAGSNLLWVPCQ-CI--QCAPLSASYYTSLDRNLSEYDPSSSSSSKNVSCSHP  177 (538)
Q Consensus       101 ~~~~~~~~~yy~~v~iGtP~q~~~v~lDTGS~~~Wv~c~-C~--~C~~~~~~~~~~~~~~~~~f~ps~SsT~~~~~C~~~  177 (538)
                      ++.|+.+..|+++|.||  +|+|.|++||||+++||+|. |.  .|...          .++.|+|++| |++..     
T Consensus        10 ~l~n~~~~~Y~~~i~iG--~Q~~~v~~DTGSs~lWv~~~~C~~~~C~~~----------~~~~y~~~~S-T~~~~-----   71 (330)
T 1yg9_A           10 LVHVFINTQYAGITKIG--NQNFLTVFDSTSCNVVVASQECVGGACVCP----------NLQKYEKLKP-KYISD-----   71 (330)
T ss_dssp             CEEEEECTTSEEEEEET--TEEEEEEEETTCCCEEEECTTCCSGGGGST----------TCCCCCCSSC-EEEEE-----
T ss_pred             eeecCCCCEEEEEEEEC--CEEEEEEEeCCCcceEEecCCCCCccCccc----------ccCccCCCCC-ceEEC-----
Confidence            45577788999999999  89999999999999999998 85  56211          2469999999 99865     


Q ss_pred             CCCCCCCCCCCCCCCceeEecCCCCceEEEEEEEEEEEeccCCCCCCCccccccEEEEEEEeecCCCCCCCCCceEEeeC
Q 009271          178 LCKSRSSCKSLKDPCPYIADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLG  257 (538)
Q Consensus       178 ~C~~~~~C~~~~~~c~y~~~Y~dg~ss~~G~l~~D~v~l~~~~~~~~~~~~~~~~~fGc~~~~~g~~~~~~~~dGIlGLG  257 (538)
                                   .|.|.+.|++| + +.|.+++|+|+|++.        ...++.|||++.+...|.. ...|||||||
T Consensus        72 -------------~~~~~i~Yg~G-s-~~G~~~~Dtv~ig~~--------~~~~~~fg~~~~~~~~f~~-~~~~GilGLg  127 (330)
T 1yg9_A           72 -------------GNVQVKFFDTG-S-AVGRGIEDSLTISQL--------TTSQQDIVLADELSQEVCI-LSADVVVGIA  127 (330)
T ss_dssp             -------------EEEEEEETTTE-E-EEEEEEEEEEEETTE--------EEEEEEEEEEEEECTHHHH-TTCSEEEECS
T ss_pred             -------------CCEEEEEECCc-e-EEEEEEEEEEEECCE--------EEcCeEEEEEEEccccccc-ccCceEEEcC
Confidence                         37899999996 4 599999999999864        3688999999988333422 3579999999


Q ss_pred             CCCCC-------hHHHHHhcCCCCCceEEeecCC--C--CccEEeCCCCCCCce----eeeeeecCCCCceEEEeEeEEE
Q 009271          258 LGDVS-------VPSLLAKAGLIQNSFSICFDEN--D--SGSVFFGDQGPATQQ----STSFLPIGEKYDAYFVGVESYC  322 (538)
Q Consensus       258 ~~~~S-------l~sqL~~~g~i~~~FS~cl~~~--~--~G~l~fG~~d~~~~~----~tplv~~~~~~~~y~V~l~~i~  322 (538)
                      +..++       ++++|+++|+|+++||+||.++  .  .|.|+||++|+.++.    |+|+..    ..+|.|++++|.
T Consensus       128 ~~~~s~~~~~~~~~~~l~~qg~i~~~FS~~l~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~w~v~l~~i~  203 (330)
T 1yg9_A          128 APGCPNALKGKTVLENFVEENLIAPVFSIHHARFQDGEHFGEIIFGGSDWKYVDGEFTYVPLVG----DDSWKFRLDGVK  203 (330)
T ss_dssp             CTTSCCTTSCCCHHHHHHHTTSSCSEEEEEEEECTTSCEEEEEEETSCCGGGEEEEEEEEEBSC----TTSCCEECSEEE
T ss_pred             cchhccccCCCCHHHHHHhcCCCCceEEEEEcCCCCCCCCCEEEECCcCHHHccCceEEEECCC----CCEEEEEeCeEE
Confidence            98876       8899999998899999999875  2  799999999998753    888752    369999999999


Q ss_pred             ECCeEeecCCceEEEcCCCccccccHHHHHHHHHHHHHhhcccccccccccccccc-cccccccccCccEEEEEcCCeee
Q 009271          323 IGNSCLTQSGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYCY-NASSEEMLKVPDMRLIFSKNQSF  401 (538)
Q Consensus       323 Vgg~~l~~~~~~aiiDSGTs~t~LP~~~y~~l~~~~~~~~~~~~~~~~~~~~~~Cy-~~~~~~~~~~P~it~~f~gg~~~  401 (538)
                      ||++.+......+||||||++++||+++|++|.+++.+...     ..+ .  ..| .++|.....+|+|+|+| ||.++
T Consensus       204 v~~~~~~~~~~~aiiDSGTs~~~lP~~~~~~l~~~~~~~~~-----~~g-~--~~~~~~~C~~~~~~p~i~f~f-gg~~~  274 (330)
T 1yg9_A          204 IGDTTVAPAGTQAIIDTSKAIIVGPKAYVNPINEAIGCVVE-----KTT-T--RRICKLDCSKIPSLPDVTFVI-NGRNF  274 (330)
T ss_dssp             ETTEEEECTTCEEEECTTCSSEEEEHHHHHHHHHHHTCEEE-----ECS-S--CEEEEECGGGGGGSCCEEEEE-TTEEE
T ss_pred             ECCEEEcCCCcEEEEecCCccccCCHHHHHHHHHHhCCccc-----CCC-c--eEEEEEECCCccccCcEEEEE-CCEEE
Confidence            99998765667899999999999999999999988854321     111 0  123 44555455789999999 78999


Q ss_pred             eeecceeEEeecCCcceEEE-EEEecC-CCceeEcceeeeeeEEEEeCCCCEEEEeecC
Q 009271          402 VVRNHIFSFPENEGFTVFCL-TVMSTD-GDYGIIGQNFMMGHRIVFDRENLKLAWSHSK  458 (538)
Q Consensus       402 ~v~~~~y~~~~~~~~~~~Cl-~i~~~~-~~~~IlG~~fl~~~yvVFD~e~~rIGfa~~~  458 (538)
                      .|++++|++..    ...|+ +|+... ++.||||+.|||++|+|||++++|||||+++
T Consensus       275 ~l~~~~y~~~~----~~~C~~~i~~~~~~~~~ilG~~fl~~~y~vfD~~~~riGfA~~~  329 (330)
T 1yg9_A          275 NISSQYYIQQN----GNLCYSGFQPCGHSDHFFIGDFFVDHYYSEFNWENKTMGFGRSV  329 (330)
T ss_dssp             EECHHHHEEEE----TTEEEESEEEETTCSSEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred             EECHHHhcccC----CCcEEEEEEeCCCCCeEEecHHHhhheEEEEECCCCEEEEEECC
Confidence            99999999876    35896 677643 4589999999999999999999999999864


No 30 
>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2
Probab=100.00  E-value=4.8e-51  Score=421.88  Aligned_cols=297  Identities=20%  Similarity=0.306  Sum_probs=239.9

Q ss_pred             eeeccccccEEEEEEEecCCCeEEEEEEEcCCCceeEecCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCCCCC
Q 009271          100 HFFGNQFYWLHYTWIDIGTPNVSFLVALDAGSNLLWVPCQCIQCAPLSASYYTSLDRNLSEYDPSSSSSSKNVSCSHPLC  179 (538)
Q Consensus       100 ~~~~~~~~~~yy~~v~iGtP~q~~~v~lDTGS~~~Wv~c~C~~C~~~~~~~~~~~~~~~~~f~ps~SsT~~~~~C~~~~C  179 (538)
                      +++.|+ +..|+++|.||||+|+|.|+|||||+++||+|.                   +.|+|++|+++.         
T Consensus         5 ~~l~n~-~~~Y~~~i~iGTP~q~~~v~~DTGSs~lWv~~~-------------------~~y~~s~Ss~~~---------   55 (340)
T 1wkr_A            5 VPATNQ-LVDYVVNVGVGSPATTYSLLVDTGSSNTWLGAD-------------------KSYVKTSTSSAT---------   55 (340)
T ss_dssp             EEEEEC-SSCEEEEEEETTTTEEEEEEEETTCCCCEECSS-------------------SCCCCCTTCEEE---------
T ss_pred             Eeeecc-CcEEEEEEEECCCCcEEEEEEeCCChhheecCC-------------------CccCCcCCcccc---------
Confidence            445554 568999999999999999999999999999873                   479998887553         


Q ss_pred             CCCCCCCCCCCCCceeEecCCCCceEEEEEEEEEEEeccCCCCCCCccccccEEEEEEEeecCCCCCCCCCceEEeeCCC
Q 009271          180 KSRSSCKSLKDPCPYIADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLG  259 (538)
Q Consensus       180 ~~~~~C~~~~~~c~y~~~Y~dg~ss~~G~l~~D~v~l~~~~~~~~~~~~~~~~~fGc~~~~~g~~~~~~~~dGIlGLG~~  259 (538)
                                 .|.|.+.|++| + ++|.+++|+|+|++.        .+.++.|||++.+.+ |.   ..|||||||+.
T Consensus        56 -----------~~~~~i~Yg~G-s-~~G~~~~Dtv~~g~~--------~v~~~~fg~~~~~~~-~~---~~~GilGLg~~  110 (340)
T 1wkr_A           56 -----------SDKVSVTYGSG-S-FSGTEYTDTVTLGSL--------TIPKQSIGVASRDSG-FD---GVDGILGVGPV  110 (340)
T ss_dssp             -----------EEEEEEECSSC-E-EEEEEEEEEEEETTE--------EEEEEEEEEEEEEES-CT---TCSEEEECSCG
T ss_pred             -----------CceEEEEECCc-E-EEEEEEEEEEEECCE--------EEcceEEEEEEccCC-Cc---CCCcEEECCcc
Confidence                       38999999996 4 899999999999874        368999999999876 42   57999999987


Q ss_pred             CC--------------ChHHHHHhcCCCC-CceEEeecCC-----CCccEEeCCCCCCCc----eeeeeeecCCCCceEE
Q 009271          260 DV--------------SVPSLLAKAGLIQ-NSFSICFDEN-----DSGSVFFGDQGPATQ----QSTSFLPIGEKYDAYF  315 (538)
Q Consensus       260 ~~--------------Sl~sqL~~~g~i~-~~FS~cl~~~-----~~G~l~fG~~d~~~~----~~tplv~~~~~~~~y~  315 (538)
                      .+              +++.+|.++|+|+ ++||+||.+.     ..|.|+||++|+.++    .|+|++.......+|.
T Consensus       111 ~~s~~~~~~~~~~~~~~~~~~l~~~g~i~~~~FS~~l~~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~~~~w~  190 (340)
T 1wkr_A          111 DLTVGTLSPHTSTSIPTVTDNLFSQGTIPTNLLAVSFEPTTSESSTNGELTFGATDSSKYTGSITYTPITSTSPASAYWG  190 (340)
T ss_dssp             GGGTTSEESCTTCCCCCHHHHHHHTTSSSSSEEEEECCCCSSSSEEEEEEEESSCCGGGCSSCCEEEECCSSTTGGGSSE
T ss_pred             ccccccccccccccCCCHHHHHHHcCCCCCCEEEEEecCCCCCCCCCcEEEEcccChhhcccceEEEECccCCCCcceEE
Confidence            64              4578999999997 9999999853     469999999998754    4899976543357899


Q ss_pred             EeEeEEEECC-eEeecCCceEEEcCCCccccccHHHHHHHHHHHHHhhcccccccccccccccccccccccccCccEEEE
Q 009271          316 VGVESYCIGN-SCLTQSGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMRLI  394 (538)
Q Consensus       316 V~l~~i~Vgg-~~l~~~~~~aiiDSGTs~t~LP~~~y~~l~~~~~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~it~~  394 (538)
                      |. ++|.||+ +.+. ....+||||||++++||+++|++|.+++.++...    .     ..+|.++|.....+|+|+|+
T Consensus       191 v~-~~i~v~~~~~l~-~~~~aiiDSGTt~~~lP~~~~~~l~~~~~a~~~~----~-----~g~~~~~C~~~~~~p~i~f~  259 (340)
T 1wkr_A          191 IN-QSIRYGSSTSIL-SSTAGIVDTGTTLTLIASDAFAKYKKATGAVADN----N-----TGLLRLTTAQYANLQSLFFT  259 (340)
T ss_dssp             EE-EEEEETTTEEEE-EEEEEEECTTBCSEEECHHHHHHHHHHHTCEECT----T-----TSSEEECHHHHHTCCCEEEE
T ss_pred             EE-eeEEECCCeEcc-CCCeEEEeCCcccccCCHHHHHHHHHhhCCEEcC----C-----CCeEEeeccccccCCcEEEE
Confidence            99 9999998 8876 4568999999999999999999998777543321    1     12445556544578999999


Q ss_pred             EcCCeeeeeecceeEEeecC-----CcceEE-EEEEecC-----CCceeEcceeeeeeEEEEeCCCCEEEEeecCCCcc
Q 009271          395 FSKNQSFVVRNHIFSFPENE-----GFTVFC-LTVMSTD-----GDYGIIGQNFMMGHRIVFDRENLKLAWSHSKCEEV  462 (538)
Q Consensus       395 f~gg~~~~v~~~~y~~~~~~-----~~~~~C-l~i~~~~-----~~~~IlG~~fl~~~yvVFD~e~~rIGfa~~~C~~~  462 (538)
                      | ||..+.+++++|+++...     +....| +++.+..     +..||||+.|||++|+|||++++|||||+++|++.
T Consensus       260 f-~g~~~~i~~~~yi~~~~~~~~~g~~~~~c~~~~~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~igfA~~~~~~~  337 (340)
T 1wkr_A          260 I-GGQTFELTANAQIWPRNLNTAIGGSASSVYLIVGDLGSDSGEGLDFINGLTFLERFYSVYDTTNKRLGLATTSFTTA  337 (340)
T ss_dssp             E-TTEEEEECTGGGBCCGGGGGGGTCCSSCEEBCEEECSSCTTSSCCEEECHHHHTSEEEEEETTTTEEEEEECTTTTC
T ss_pred             E-CCEEEEEcHHHhccccccccccCCCCceEEEEEecCCCCCCCCcceEeChHhhhheEEEEeCCCCeEEEEecCCCCC
Confidence            9 678999999999876431     112467 5676532     23699999999999999999999999999999863


No 31 
>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2
Probab=100.00  E-value=9.3e-51  Score=417.21  Aligned_cols=298  Identities=20%  Similarity=0.310  Sum_probs=240.0

Q ss_pred             ccccEEEEEEEecCCCeEEEEEEEcCCCceeEecC-CCCCCCCccccccccCCCCCCCCCCCCCCCccccCCCCCCCCCC
Q 009271          105 QFYWLHYTWIDIGTPNVSFLVALDAGSNLLWVPCQ-CIQCAPLSASYYTSLDRNLSEYDPSSSSSSKNVSCSHPLCKSRS  183 (538)
Q Consensus       105 ~~~~~yy~~v~iGtP~q~~~v~lDTGS~~~Wv~c~-C~~C~~~~~~~~~~~~~~~~~f~ps~SsT~~~~~C~~~~C~~~~  183 (538)
                      ..+..||++|.||  +|+|.|++||||+++||+|. |..|..+          .++.|+|++|+ ++.            
T Consensus        11 ~~~~~Y~~~i~iG--~Q~~~v~~DTGSs~lWv~~~~C~~~~c~----------~~~~y~~~~Ss-~~~------------   65 (325)
T 1ibq_A           11 NNDEEYLTPVTVG--KSTLHLDFDTGSADLWVFSDELPSSEQT----------GHDLYTPSSSA-TKL------------   65 (325)
T ss_dssp             TTTSCEEEEEEEB--TEEEEEEEETTCCCEEEECTTSCHHHHT----------TSCCCBCCSSC-EEC------------
T ss_pred             CCCCEEEEEEEEC--CEEEEEEEeCCCccceEeeCCCCccccC----------CCCCCCchhcC-Ccc------------
Confidence            3567899999999  89999999999999999998 8766321          35799999998 542            


Q ss_pred             CCCCCCCCCceeEecCCCCceEEEEEEEEEEEeccCCCCCCCccccccEEEEEEEeecCCCCCCCCCceEEeeCCCCCC-
Q 009271          184 SCKSLKDPCPYIADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVS-  262 (538)
Q Consensus       184 ~C~~~~~~c~y~~~Y~dg~ss~~G~l~~D~v~l~~~~~~~~~~~~~~~~~fGc~~~~~g~~~~~~~~dGIlGLG~~~~S-  262 (538)
                            +.|.|.+.|++| +.+.|.+++|+|+|++.        ...++.|||++.+.+.|......|||||||+..++ 
T Consensus        66 ------~~~~~~i~Yg~G-s~~~G~~~~D~v~ig~~--------~v~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~  130 (325)
T 1ibq_A           66 ------SGYSWDISYGDG-SSASGDVYRDTVTVGGV--------TTNKQAVEAASKISSEFVQDTANDGLLGLAFSSINT  130 (325)
T ss_dssp             ------TTCBEEEECSSS-CEEEEEEEEEEEEETTE--------EEEEEEEEEEEEECHHHHTSTTCCEEEECSCGGGCC
T ss_pred             ------CCCEEEEEeCCC-CEEEEEEEEeEEEECCE--------EEcceEEEEEEecCccccccCCCceEEEeCcccccc
Confidence                  258999999996 67899999999999864        36889999999987766543467999999997654 


Q ss_pred             --------hHHHHHhcCCCCCceEEeecCCCCccEEeCCCCCCCc----eeeeeeecCCCCceEEEeEeEEEECCeEeec
Q 009271          263 --------VPSLLAKAGLIQNSFSICFDENDSGSVFFGDQGPATQ----QSTSFLPIGEKYDAYFVGVESYCIGNSCLTQ  330 (538)
Q Consensus       263 --------l~sqL~~~g~i~~~FS~cl~~~~~G~l~fG~~d~~~~----~~tplv~~~~~~~~y~V~l~~i~Vgg~~l~~  330 (538)
                              +++||.++ +-+++||+||.++..|.|+||++|+.++    .|+|++..   ..+|.|++++|.||++.+..
T Consensus       131 ~~p~~~~~~~~~l~~~-i~~~~FS~~l~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~---~~~w~v~l~~i~v~~~~~~~  206 (325)
T 1ibq_A          131 VQPKAQTTFFDTVKSQ-LDSPLFAVQLKHDAPGVYDFGYIDDSKYTGSITYTDADSS---QGYWGFSTDGYSIGDGSSSS  206 (325)
T ss_dssp             CBSSCCCCHHHHHGGG-SSSSEEEEEEETTEEEEEEESSCCGGGBSSCCEEEECBCT---TSSCEEEECEEEETTSCCBS
T ss_pred             cCcCCCCCHHHHHHHh-cCCcEEEEEecCCCCceEEECCcChhhccCceEEEEcCCC---CceEEEEECcEEECCeeccC
Confidence                    56899876 3359999999987789999999998764    48898642   36899999999999988865


Q ss_pred             CCceEEEcCCCccccccHHHHHHHHHHHHHhhcccccccccccccccccccccccccCccEEEEEcCCeeeeeecceeEE
Q 009271          331 SGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMRLIFSKNQSFVVRNHIFSF  410 (538)
Q Consensus       331 ~~~~aiiDSGTs~t~LP~~~y~~l~~~~~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~it~~f~gg~~~~v~~~~y~~  410 (538)
                      ....+||||||++++||+++|++|.+++....   ...........|+       ..+|+|+|+| ||.++.|++++|++
T Consensus       207 ~~~~aiiDSGTt~~~lP~~~~~~i~~~i~~a~---~~~~~g~~~~~C~-------~~~P~i~f~f-gg~~~~i~~~~~~~  275 (325)
T 1ibq_A          207 SGFSAIADTGTTLILLDDEIVSAYYEQVSGAQ---ESYEAGGYVFSCS-------TDLPDFTVVI-GDYKAVVPGKYINY  275 (325)
T ss_dssp             CCEEEEECTTCCSEEECHHHHHHHHTTSTTCB---CCSSSSSCEEETT-------CCCCCEEEEE-TTEEEEECHHHHEE
T ss_pred             CCceEEEeCCCCcEeCCHHHHHHHHHhCCCce---EcCcCCeEEEEcC-------CCCCcEEEEE-CCEEEEECHHHhcc
Confidence            67789999999999999999999987763221   1111111112354       3689999999 78999999999988


Q ss_pred             eecCCcceEEEE-EEecC-CCceeEcceeeeeeEEEEeCCCCEEEEeec
Q 009271          411 PENEGFTVFCLT-VMSTD-GDYGIIGQNFMMGHRIVFDRENLKLAWSHS  457 (538)
Q Consensus       411 ~~~~~~~~~Cl~-i~~~~-~~~~IlG~~fl~~~yvVFD~e~~rIGfa~~  457 (538)
                      ...+.....|++ |+..+ .+.||||+.|||++|+|||++++|||||++
T Consensus       276 ~~~~~~~~~C~~~i~~~~~~~~~iLG~~fl~~~y~vfD~~~~~igfA~~  324 (325)
T 1ibq_A          276 APVSTGSSTCYGGIQSNSGLGLSILGDVFLKSQYVVFNSEGPKLGFAAQ  324 (325)
T ss_dssp             EESSTTCSEEEESEEECTTTCSEEECHHHHTTEEEEEETTTTEEEEEEB
T ss_pred             cccCCCCCeEEEEEEcCCCCCceEEChHHhcCEEEEEECCCCEEEeeeC
Confidence            754311479965 66654 458999999999999999999999999986


No 32 
>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A*
Probab=100.00  E-value=4.5e-50  Score=411.74  Aligned_cols=295  Identities=20%  Similarity=0.295  Sum_probs=238.0

Q ss_pred             ccccEEEEEEEecCCCeEEEEEEEcCCCceeEecC-CCCCCCCccccccccCCCCCCCCCCCCCCCccccCCCCCCCCCC
Q 009271          105 QFYWLHYTWIDIGTPNVSFLVALDAGSNLLWVPCQ-CIQCAPLSASYYTSLDRNLSEYDPSSSSSSKNVSCSHPLCKSRS  183 (538)
Q Consensus       105 ~~~~~yy~~v~iGtP~q~~~v~lDTGS~~~Wv~c~-C~~C~~~~~~~~~~~~~~~~~f~ps~SsT~~~~~C~~~~C~~~~  183 (538)
                      ..+..||++|.||  ||+|.|+|||||+++||+|. |..|...          .++.|+|++|+ ++.            
T Consensus        12 ~~~~~Y~~~i~iG--~q~~~v~~DTGSs~lWv~~~~C~~~~c~----------~~~~y~~~~Ss-~~~------------   66 (323)
T 1izd_A           12 SNDEEYITQVTVG--DDTLGLDFDTGSADLWVFSSQTPSSERS----------GHDYYTPGSSA-QKI------------   66 (323)
T ss_dssp             GGGCCEEEEEEET--TEEEEEEEETTCCCEEECBTTSCHHHHT----------TCCCBCCCTTC-EEE------------
T ss_pred             CCCCEEEEEEEEC--CEEEEEEEcCCCcceEEecCCCCccccc----------CCCCCCccccC-Ccc------------
Confidence            3567899999999  79999999999999999998 8766321          34789999998 542            


Q ss_pred             CCCCCCCCCceeEecCCCCceEEEEEEEEEEEeccCCCCCCCccccccEEEEEEEeecCCCCCCCCCceEEeeCCCCCC-
Q 009271          184 SCKSLKDPCPYIADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVS-  262 (538)
Q Consensus       184 ~C~~~~~~c~y~~~Y~dg~ss~~G~l~~D~v~l~~~~~~~~~~~~~~~~~fGc~~~~~g~~~~~~~~dGIlGLG~~~~S-  262 (538)
                            +.|.|.+.|++| +.+.|.+++|+|+|++.        ...++.|||++.+.+.|......|||||||+..++ 
T Consensus        67 ------~~~~~~i~Yg~G-s~~~G~~~~D~v~ig~~--------~v~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~  131 (323)
T 1izd_A           67 ------DGATWSISYGDG-SSASGDVYKDKVTVGGV--------SYDSQAVESAEKVSSEFTQDTANDGLLGLAFSSINT  131 (323)
T ss_dssp             ------EEEEEEEECTTS-CEEEEEEEEEEEEETTE--------EEEEEEEEEEEEECHHHHHCTTCCEEEECSCGGGCC
T ss_pred             ------CCCeEEEEcCCC-CeEEEEEEEEEEEECCE--------EECceEEEEEEeccccccccCCCceEEecCcccccc
Confidence                  248999999996 67899999999999864        36889999999987766433367999999997654 


Q ss_pred             --------hHHHHHhcCCCCCceEEeecCCCCccEEeCCCCCCCce----eeeeeecCCCCceEEEeEeEEEECCeEeec
Q 009271          263 --------VPSLLAKAGLIQNSFSICFDENDSGSVFFGDQGPATQQ----STSFLPIGEKYDAYFVGVESYCIGNSCLTQ  330 (538)
Q Consensus       263 --------l~sqL~~~g~i~~~FS~cl~~~~~G~l~fG~~d~~~~~----~tplv~~~~~~~~y~V~l~~i~Vgg~~l~~  330 (538)
                              ++++|.++ +-+++||+||.++..|.|+||++|+.++.    |+|++..   ..+|.|++++|.||+ .+..
T Consensus       132 ~~p~~~~~~~~~l~~~-i~~~~FS~~L~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~---~~~w~v~l~~i~v~~-~~~~  206 (323)
T 1izd_A          132 VQPTPQKTFFDNVKSS-LSEPIFAVALKHNAPGVYDFGYTDSSKYTGSITYTDVDNS---QGFWGFTADGYSIGS-DSSS  206 (323)
T ss_dssp             CBSSCCCCHHHHHGGG-SSSSEEEEECCTTSCEEEEESSCCTTSEEEEEEEEECBCT---TSSCEEEESEEEETT-EEEC
T ss_pred             cCCCCCCCHHHHHHHh-ccCcEEEEEccCCCCCEEEECCcCccccccceEEEECCCC---CceEEEEECeEEECC-cccC
Confidence                    56889876 43599999999877899999999998753    8888532   368999999999999 6665


Q ss_pred             CCceEEEcCCCccccccHHHHHHHHHHHHHhhcccccccccccccccccccccccccCccEEEEEcCCeeeeeecceeEE
Q 009271          331 SGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMRLIFSKNQSFVVRNHIFSF  410 (538)
Q Consensus       331 ~~~~aiiDSGTs~t~LP~~~y~~l~~~~~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~it~~f~gg~~~~v~~~~y~~  410 (538)
                      ....+||||||++++||+++|++|.+++....   ......     .|..+|.  ..+|+|+|+| ||.++.|++++|++
T Consensus       207 ~~~~aiiDSGTs~~~lp~~~~~~i~~~i~ga~---~~~~~g-----~~~~~C~--~~~P~i~f~f-gg~~~~i~~~~~~~  275 (323)
T 1izd_A          207 DSITGIADTGTTLLLLDDSIVDAYYEQVNGAS---YDSSQG-----GYVFPSS--ASLPDFSVTI-GDYTATVPGEYISF  275 (323)
T ss_dssp             CCEEEEECTTCCSEEECHHHHHHHHTTSTTCE---EETTTT-----EEEEETT--CCCCCEEEEE-TTEEEEECHHHHEE
T ss_pred             CCceEEEeCCCcceeCCHHHHHHHHHhCCCcE---EcCcCC-----EEEEECC--CCCceEEEEE-CCEEEecCHHHeEE
Confidence            67789999999999999999999987663211   111111     1223343  3689999999 78999999999988


Q ss_pred             eecCCcceEEEE-EEecC-CCceeEcceeeeeeEEEEeCCCCEEEEeec
Q 009271          411 PENEGFTVFCLT-VMSTD-GDYGIIGQNFMMGHRIVFDRENLKLAWSHS  457 (538)
Q Consensus       411 ~~~~~~~~~Cl~-i~~~~-~~~~IlG~~fl~~~yvVFD~e~~rIGfa~~  457 (538)
                      ....  ...|++ |+..+ .+.||||+.|||++|+|||++++|||||++
T Consensus       276 ~~~~--~~~C~~~i~~~~~~~~~IlG~~fl~~~y~vfD~~~~riGfA~~  322 (323)
T 1izd_A          276 ADVG--NGQTFGGIQSNSGIGFSIFGDVFLKSQYVVFDASGPRLGFAAQ  322 (323)
T ss_dssp             EECS--TTEEEESEEECTTTSSEEECHHHHTTEEEEEETTTTEEEEEEE
T ss_pred             ecCC--CCeEEEEEEcCCCCCcEEEChHHhcCEEEEEECCCCEEEEeeC
Confidence            7542  578975 77654 458999999999999999999999999985


No 33 
>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A
Probab=100.00  E-value=2.6e-50  Score=413.59  Aligned_cols=295  Identities=18%  Similarity=0.317  Sum_probs=236.8

Q ss_pred             ccccEEEEEEEecCCCeEEEEEEEcCCCceeEecC-CCCCCCCccccccccCCCCCCCCCCCCCCCccccCCCCCCCCCC
Q 009271          105 QFYWLHYTWIDIGTPNVSFLVALDAGSNLLWVPCQ-CIQCAPLSASYYTSLDRNLSEYDPSSSSSSKNVSCSHPLCKSRS  183 (538)
Q Consensus       105 ~~~~~yy~~v~iGtP~q~~~v~lDTGS~~~Wv~c~-C~~C~~~~~~~~~~~~~~~~~f~ps~SsT~~~~~C~~~~C~~~~  183 (538)
                      ..+..||++|.||  ||+|.|++||||+++||+|. |..|...          .++.|+|++|+ ++.            
T Consensus        12 ~~~~~Y~~~i~iG--~Q~~~v~~DTGSs~lWv~~~~C~~~~c~----------~~~~y~~~~Ss-~~~------------   66 (323)
T 1bxo_A           12 ANDEEYITPVTIG--GTTLNLNFDTGSADLWVFSTELPASQQS----------GHSVYNPSATG-KEL------------   66 (323)
T ss_dssp             GGGSCEEEEEEET--TEEEEEEEETTCCCEEECBTTSCHHHHT----------TSCCBCHHHHC-EEE------------
T ss_pred             CCCCEEEEEEEEC--CEEEEEEEeCCCcceEEecCCCCchhcc----------CCCCCCcccCC-ccc------------
Confidence            3567899999999  89999999999999999998 8766322          35799999998 553            


Q ss_pred             CCCCCCCCCceeEecCCCCceEEEEEEEEEEEeccCCCCCCCccccccEEEEEEEeecCCCCCCCCCceEEeeCCCCC--
Q 009271          184 SCKSLKDPCPYIADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDV--  261 (538)
Q Consensus       184 ~C~~~~~~c~y~~~Y~dg~ss~~G~l~~D~v~l~~~~~~~~~~~~~~~~~fGc~~~~~g~~~~~~~~dGIlGLG~~~~--  261 (538)
                            +.|.|.+.|++| +.++|.+++|+|+|++.        ...++.|||++.+++.|......|||||||+..+  
T Consensus        67 ------~~~~~~i~Yg~G-s~~~G~~~~D~v~ig~~--------~v~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~  131 (323)
T 1bxo_A           67 ------SGYTWSISYGDG-SSASGNVFTDSVTVGGV--------TAHGQAVQAAQQISAQFQQDTNNDGLLGLAFSSINT  131 (323)
T ss_dssp             ------EEEEEEEECTTS-CEEEEEEEEEEEEETTE--------EEEEEEEEEEEEECHHHHTCTTCSEEEECSCGGGCC
T ss_pred             ------CCCeEEEEeCCC-CeEEEEEEEEEEEECCE--------EECcEEEEEEEecCcccccCCCCceEEEeCcccccc
Confidence                  248999999996 67899999999999874        3688999999998776654346799999998754  


Q ss_pred             -------ChHHHHHhcCCCCCceEEeecCCCCccEEeCCCCCCCc----eeeeeeecCCCCceEEEeEeEEEECCeEeec
Q 009271          262 -------SVPSLLAKAGLIQNSFSICFDENDSGSVFFGDQGPATQ----QSTSFLPIGEKYDAYFVGVESYCIGNSCLTQ  330 (538)
Q Consensus       262 -------Sl~sqL~~~g~i~~~FS~cl~~~~~G~l~fG~~d~~~~----~~tplv~~~~~~~~y~V~l~~i~Vgg~~l~~  330 (538)
                             +++++|+++ +-+++||+||.++..|.|+||++|+.++    .|+|++..   ..+|.|++++|.||+  +..
T Consensus       132 ~~~~~~~~~~~~l~~~-i~~~~FS~~L~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~---~~~w~v~l~~i~v~~--~~~  205 (323)
T 1bxo_A          132 VQPQSQTTFFDTVKSS-LAQPLFAVALKHQQPGVYDFGFIDSSKYTGSLTYTGVDNS---QGFWSFNVDSYTAGS--QSG  205 (323)
T ss_dssp             CBSSCCCCHHHHHGGG-BSSSEEEEECCSSSCEEEEESSCCGGGBSSCCEEEECBCT---TSSCEEEEEEEEETT--EEE
T ss_pred             cccCCCCCHHHHHHHh-cCCcEEEEEEeCCCCceEEEeCcChhhccCceEEEECCCC---CCeEEEEEeeEEECC--ccC
Confidence                   367889876 3349999999987789999999998764    48898642   368999999999999  444


Q ss_pred             CCceEEEcCCCccccccHHHHHHHHHHHHHhhcccccccccccccccccccccccccCccEEEEEcCCeeeeeecceeEE
Q 009271          331 SGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMRLIFSKNQSFVVRNHIFSF  410 (538)
Q Consensus       331 ~~~~aiiDSGTs~t~LP~~~y~~l~~~~~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~it~~f~gg~~~~v~~~~y~~  410 (538)
                      ....+||||||++++||+++|++|.+++....   ...........|+       ..+|+|+|+| ||.++.|++++|++
T Consensus       206 ~~~~aiiDSGTs~~~lP~~~~~~l~~~i~~a~---~~~~~g~~~~~C~-------~~~P~i~f~f-gg~~~~l~~~~~~~  274 (323)
T 1bxo_A          206 DGFSGIADTGTTLLLLDDSVVSQYYSQVSGAQ---QDSNAGGYVFDCS-------TNLPDFSVSI-SGYTATVPGSLINY  274 (323)
T ss_dssp             EEEEEEECTTCSSEEECHHHHHHHHTTSTTCE---EETTTTEEEECTT-------CCCCCEEEEE-TTEEEEECHHHHEE
T ss_pred             CCceEEEeCCCCceeCCHHHHHHHHHhCCCce---EcCcCCEEEEECC-------CCCceEEEEE-CCEEEEECHHHeEE
Confidence            56789999999999999999999987763221   1111111112354       3689999999 78999999999988


Q ss_pred             eecCCcceEEEE-EEecC-CCceeEcceeeeeeEEEEeCCCCEEEEeec
Q 009271          411 PENEGFTVFCLT-VMSTD-GDYGIIGQNFMMGHRIVFDRENLKLAWSHS  457 (538)
Q Consensus       411 ~~~~~~~~~Cl~-i~~~~-~~~~IlG~~fl~~~yvVFD~e~~rIGfa~~  457 (538)
                      ....+ ...|+. |+..+ .+.||||+.|||++|+|||++|+|||||++
T Consensus       275 ~~~~~-~~~C~~~i~~~~~~~~~ILG~~fl~~~y~vfD~~~~riGfA~~  322 (323)
T 1bxo_A          275 GPSGD-GSTCLGGIQSNSGIGFSIFGDIFLKSQYVVFDSDGPQLGFAPQ  322 (323)
T ss_dssp             EECSS-SSCEEESEEECTTCSSEEECHHHHTTEEEEEETTTTEEEEEEB
T ss_pred             eccCC-CCeEEEEEECCCCCCcEEEChHHHcCEEEEEECCCCEEEEecC
Confidence            76432 478965 77654 458999999999999999999999999986


No 34 
>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2
Probab=100.00  E-value=1.9e-41  Score=333.05  Aligned_cols=219  Identities=26%  Similarity=0.389  Sum_probs=185.5

Q ss_pred             CceeeeccccccEEEEEEEecCCCeEEEEEEEcCCCceeEecC-CC---CCCCCccccccccCCCCCCCCCCCCCCCccc
Q 009271           97 SQTHFFGNQFYWLHYTWIDIGTPNVSFLVALDAGSNLLWVPCQ-CI---QCAPLSASYYTSLDRNLSEYDPSSSSSSKNV  172 (538)
Q Consensus        97 ~~~~~~~~~~~~~yy~~v~iGtP~q~~~v~lDTGS~~~Wv~c~-C~---~C~~~~~~~~~~~~~~~~~f~ps~SsT~~~~  172 (538)
                      +..+++.|+.+..||++|.||||+|+|.|+|||||+++||+|. |.   .|..            ++.|+|++|+|++..
T Consensus         2 ~~~~~l~n~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~lWv~~~~C~~~~~C~~------------~~~y~~~~SsT~~~~   69 (239)
T 1b5f_A            2 SAVVALTNDRDTSYFGEIGIGTPPQKFTVIFDTGSSVLWVPSSKCINSKACRA------------HSMYESSDSSTYKEN   69 (239)
T ss_dssp             CEEEEEEEETTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSCHHHHT------------SCCBCGGGCTTCEEE
T ss_pred             CceeeeeecCCCEEEEEEEECCCCeEEEEEEeCCCcceEEEcCCCCCCcccCC------------CCCCCCccCCCeeeC
Confidence            4457788889999999999999999999999999999999997 75   4543            368999999999975


Q ss_pred             cCCCCCCCCCCCCCCCCCCCceeEecCCCCceEEEEEEEEEEEeccCCCCCCCccccccEEEEEEEeecCCCCCCCCCce
Q 009271          173 SCSHPLCKSRSSCKSLKDPCPYIADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIGCGRKQTGSYLDGAAPDG  252 (538)
Q Consensus       173 ~C~~~~C~~~~~C~~~~~~c~y~~~Y~dg~ss~~G~l~~D~v~l~~~~~~~~~~~~~~~~~fGc~~~~~g~~~~~~~~dG  252 (538)
                      .                  |.|.+.|++| + +.|.+++|+|+|++.        ...++.|||++.+.+..+.....||
T Consensus        70 ~------------------~~~~i~Yg~G-s-~~G~~~~D~v~~g~~--------~v~~~~fg~~~~~~~~~f~~~~~~G  121 (239)
T 1b5f_A           70 G------------------TFGAIIYGTG-S-ITGFFSQDSVTIGDL--------VVKEQDFIEATDEADNVFLHRLFDG  121 (239)
T ss_dssp             E------------------EEEEEECSSC-E-EEEEEEEEEEEETTE--------EEEEEEEEEEEEECHHHHTTCSCCE
T ss_pred             C------------------cEEEEEECCC-c-EEEEEEEEEEEECCc--------EEccEEEEEEEeccCccccccCcce
Confidence            3                  7899999996 4 789999999999864        3678999999987663222236799


Q ss_pred             EEeeCCCCCC--hHHHHHhcCCCC-CceEEeecCC----CCccEEeCCCCCCCc----eeeeeeecCCCCceEEEeEeEE
Q 009271          253 VMGLGLGDVS--VPSLLAKAGLIQ-NSFSICFDEN----DSGSVFFGDQGPATQ----QSTSFLPIGEKYDAYFVGVESY  321 (538)
Q Consensus       253 IlGLG~~~~S--l~sqL~~~g~i~-~~FS~cl~~~----~~G~l~fG~~d~~~~----~~tplv~~~~~~~~y~V~l~~i  321 (538)
                      |||||+..++  +..+|+++|+|. ++||+||.++    ..|.|+||++|+.++    .|+|++.    ..+|.|.|++|
T Consensus       122 ilGLg~~~~s~p~~~~l~~qg~i~~~~FS~~l~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~~~v~l~~i  197 (239)
T 1b5f_A          122 ILGLSFQTISVPVWYNMLNQGLVKERRFSFWLNRNVDEEEGGELVFGGLDPNHFRGDHTYVPVTY----QYYWQFGIGDV  197 (239)
T ss_dssp             EEECSCCSSSCCHHHHHHHTTCCSSSEEEEEECCSCSSSCCEEEEETSCCGGGEEEEEEEEEEEE----ETTEEEEECCE
T ss_pred             EEecCccccccHHHHHHHHCCCCCCCEEEEEEeCCCCCCCCeEEEECCcChhhccCceEEEEccc----CCeEEEEeeEE
Confidence            9999999987  556799999986 9999999863    579999999998865    3888864    26899999999


Q ss_pred             EECCeEee--cCCceEEEcCCCccccccHHHHHHHHHHHH
Q 009271          322 CIGNSCLT--QSGFQALVDSGASFTFLPTEIYAEVVVKFD  359 (538)
Q Consensus       322 ~Vgg~~l~--~~~~~aiiDSGTs~t~LP~~~y~~l~~~~~  359 (538)
                      .||++.+.  .....+||||||++++||+++|++|.++|.
T Consensus       198 ~v~~~~~~~~~~~~~aiiDTGTt~~~lP~~~~~~i~~~ig  237 (239)
T 1b5f_A          198 LIGDKSTGFCAPGCQAFADSGTSLLSGPTAIVTQINHAIG  237 (239)
T ss_dssp             EETTEECCTTTTCEEEEECTTCSSEEECHHHHHHHHHHTT
T ss_pred             EECCEEecccCCCCEEEEecCcchhhCCHHHHHHHHHHhC
Confidence            99999875  245689999999999999999999998764


No 35 
>1lya_B Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_B* 1lyw_B*
Probab=100.00  E-value=8.7e-36  Score=292.84  Aligned_cols=216  Identities=20%  Similarity=0.352  Sum_probs=174.7

Q ss_pred             ccccEEEEEEEeecCCCCCCCCCceEEeeCCCCC------ChHHHHHhcCCCC-CceEEeecCCC----CccEEeCCCCC
Q 009271          228 VQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDV------SVPSLLAKAGLIQ-NSFSICFDEND----SGSVFFGDQGP  296 (538)
Q Consensus       228 ~~~~~~fGc~~~~~g~~~~~~~~dGIlGLG~~~~------Sl~sqL~~~g~i~-~~FS~cl~~~~----~G~l~fG~~d~  296 (538)
                      .++++.|||++.+.+.+......|||||||++.+      +++++|+++|+|. ++||+||.+..    .|.|+||++|+
T Consensus         4 ~v~~~~Fg~~~~~~~~~f~~~~~dGilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FS~~l~~~~~~~~~G~l~fGg~d~   83 (241)
T 1lya_B            4 KVERQVFGEATKQPGITFIAAKFDGILGMAYPRISVNNVLPVFDNLMQQKLVDQNIFSFYLSRDPDAQPGGELMLGGTDS   83 (241)
T ss_dssp             EEEEEEEEEEEECCSSTTTSCSSSEEEECSCGGGCGGGCCCHHHHHHHTTCSSSSEEEEEECSSTTCSSCEEEEETSCCG
T ss_pred             EECCeEEEEEEEccCCccccccCCEEEECCcchhhccCCChHHHHHHHCCCCCCCEEEEEEeCCCCCCCCcEEEECCcCH
Confidence            4689999999998886544447899999999875      4678999999996 99999998752    79999999999


Q ss_pred             CCce----eeeeeecCCCCceEEEeEeEEEECCeEe-ecCCceEEEcCCCccccccHHHHHHHHHHHHHhhccccccccc
Q 009271          297 ATQQ----STSFLPIGEKYDAYFVGVESYCIGNSCL-TQSGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQG  371 (538)
Q Consensus       297 ~~~~----~tplv~~~~~~~~y~V~l~~i~Vgg~~l-~~~~~~aiiDSGTs~t~LP~~~y~~l~~~~~~~~~~~~~~~~~  371 (538)
                      .++.    |+|++.    ..+|.|++++|+|+++.+ ......+||||||++++||+++|++|.+++.+...     ...
T Consensus        84 ~~~~g~l~~~p~~~----~~~~~v~l~~i~v~~~~~~~~~~~~aiiDSGTt~~~lP~~~~~~l~~~~~~~~~-----~~g  154 (241)
T 1lya_B           84 KYYKGSLSYLNVTR----KAYWQVHLDQVEVASGLTLCKEGCEAIVDTGTSLMVGPVDEVRELQKAIGAVPL-----IQG  154 (241)
T ss_dssp             GGEEEEEEEEECSS----BTTBEEEEEEEEETTSCEESTTCEEEEECTTCSSEEECHHHHHHHHHHHTCEEE-----ETT
T ss_pred             HHcCCceEEEECcc----ccEEEEEEeEEEECCeeEeccCCCEEEEECCCccccCCHHHHHHHHHHhCCeec-----cCC
Confidence            8753    788753    378999999999999874 33567899999999999999999999988754321     111


Q ss_pred             ccccccccccccccccCccEEEEEcCCeeeeeecceeEEeecCCcceEEE-EEEecC-----CCceeEcceeeeeeEEEE
Q 009271          372 NSWKYCYNASSEEMLKVPDMRLIFSKNQSFVVRNHIFSFPENEGFTVFCL-TVMSTD-----GDYGIIGQNFMMGHRIVF  445 (538)
Q Consensus       372 ~~~~~Cy~~~~~~~~~~P~it~~f~gg~~~~v~~~~y~~~~~~~~~~~Cl-~i~~~~-----~~~~IlG~~fl~~~yvVF  445 (538)
                           .|..+|.....+|+|+|+| ||.++.|++++|++...+.....|+ +|+..+     .+.||||++||+++|+||
T Consensus       155 -----~~~~~C~~~~~~p~i~f~f-~g~~~~l~~~~y~~~~~~~~~~~C~~~~~~~~~~~~~~~~~ilG~~fl~~~y~vf  228 (241)
T 1lya_B          155 -----EYMIPCEKVSTLPAITLKL-GGKGYKLSPEDYTLKVSQAGKTLCLSGFMGMDIPPPSGPLWILGDVFIGRYYTVF  228 (241)
T ss_dssp             -----EEEEEGGGGGGSCCEEEEE-TTEEEEECTTTSEEEETTTTSSEEEESEEECCCCTTTCCCEEECHHHHTTEEEEE
T ss_pred             -----cEEEECCCCccCCeEEEEE-CCEEEEECHHHhEEEccCCCCCeeEEEEEecccCCCCCCeEEechHHhcceEEEE
Confidence                 2333444445789999999 7799999999999987543246896 687752     458999999999999999


Q ss_pred             eCCCCEEEEeecC
Q 009271          446 DRENLKLAWSHSK  458 (538)
Q Consensus       446 D~e~~rIGfa~~~  458 (538)
                      |++++|||||+++
T Consensus       229 D~~~~~igfA~~~  241 (241)
T 1lya_B          229 DRDNNRVGFAEAA  241 (241)
T ss_dssp             ETTTTEEEEEEEC
T ss_pred             ECCCCEEEEEEcC
Confidence            9999999999863


No 36 
>1lya_A Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_A* 1lyw_A*
Probab=99.86  E-value=5.5e-22  Score=166.38  Aligned_cols=88  Identities=31%  Similarity=0.508  Sum_probs=77.6

Q ss_pred             eeeeccccccEEEEEEEecCCCeEEEEEEEcCCCceeEecC-CC----CCCCCccccccccCCCCCCCCCCCCCCCcccc
Q 009271           99 THFFGNQFYWLHYTWIDIGTPNVSFLVALDAGSNLLWVPCQ-CI----QCAPLSASYYTSLDRNLSEYDPSSSSSSKNVS  173 (538)
Q Consensus        99 ~~~~~~~~~~~yy~~v~iGtP~q~~~v~lDTGS~~~Wv~c~-C~----~C~~~~~~~~~~~~~~~~~f~ps~SsT~~~~~  173 (538)
                      .+++.|+.+..||++|.||||||+|.|+|||||+++||+|. |.    .|..            ++.|+|++|+|++...
T Consensus         4 ~~~l~n~~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~C~~~~~~C~~------------~~~y~p~~SsT~~~~~   71 (97)
T 1lya_A            4 PEVLKNYMDAQYYGEIGIGTPPQCFTVVFDTGSSNLWVPSIHCKLLDIACWI------------HHKYNSDKSSTYVKNG   71 (97)
T ss_dssp             EEEEEEETTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCTTCHHHHT------------SCCBCGGGCTTCEEEE
T ss_pred             eEeeEECCCCeEEEEEEECCCCeEEEEEEeCCCCceEEeEcCccCcccccCC------------CCCCCchhCCCceeCC
Confidence            46677888899999999999999999999999999999998 75    4543            4689999999999763


Q ss_pred             CCCCCCCCCCCCCCCCCCCceeEecCCCCceEEEEEEEEEEEecc
Q 009271          174 CSHPLCKSRSSCKSLKDPCPYIADYSTEDTSSSGYLVDDILHLAS  218 (538)
Q Consensus       174 C~~~~C~~~~~C~~~~~~c~y~~~Y~dg~ss~~G~l~~D~v~l~~  218 (538)
                                        |.|.+.|++| + +.|.+++|+|+|++
T Consensus        72 ------------------~~~~i~Yg~G-s-~~G~~~~Dtv~i~g   96 (97)
T 1lya_A           72 ------------------TSFDIHYGSG-S-LSGYLSQDTVSVPC   96 (97)
T ss_dssp             ------------------EEEEEECSSC-E-EEEEEEEEEEEESC
T ss_pred             ------------------CcEEEEECCc-E-EEEEEEEEEEEECC
Confidence                              8999999996 4 89999999999975


No 37 
>1b5f_B Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2
Probab=99.59  E-value=1.1e-15  Score=125.31  Aligned_cols=79  Identities=18%  Similarity=0.349  Sum_probs=64.7

Q ss_pred             cccccccccCccEEEEEcCCeeeeeecceeEEeecCCcceEEE-EEEec----CCCceeEcceeeeeeEEEEeCCCCEEE
Q 009271          379 NASSEEMLKVPDMRLIFSKNQSFVVRNHIFSFPENEGFTVFCL-TVMST----DGDYGIIGQNFMMGHRIVFDRENLKLA  453 (538)
Q Consensus       379 ~~~~~~~~~~P~it~~f~gg~~~~v~~~~y~~~~~~~~~~~Cl-~i~~~----~~~~~IlG~~fl~~~yvVFD~e~~rIG  453 (538)
                      .++|+....+|+|+|+| ||.++.+++++|++...++....|+ +|+..    .++.||||+.||+++|+|||++++|||
T Consensus         4 ~v~C~~~~~~P~i~f~~-gg~~~~l~~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~ILGd~Fl~~~y~vfD~~~~riG   82 (87)
T 1b5f_B            4 QVDCNTLSSMPNVSFTI-GGKKFGLTPEQYILKVGKGEATQCISGFTAMDATLLGPLWILGDVFMRPYHTVFDYGNLLVG   82 (87)
T ss_dssp             EECGGGGGGCCCEEEEE-TTEEEEECHHHHEEEESCTTTCEEEESEEECCCBSSSBEEEECHHHHTTEEEEEETTTTEEE
T ss_pred             EEECCCCCcCCcEEEEE-CCEEEEECHHHhEEEccCCCCCEEEEEEEECCCCCCCCeEEechHHhccEEEEEECCCCEEE
Confidence            44555556789999999 7799999999999886543246896 67764    235899999999999999999999999


Q ss_pred             EeecC
Q 009271          454 WSHSK  458 (538)
Q Consensus       454 fa~~~  458 (538)
                      ||+++
T Consensus        83 fA~~~   87 (87)
T 1b5f_B           83 FAEAA   87 (87)
T ss_dssp             EEEEC
T ss_pred             EEEcC
Confidence            99863


No 38 
>3s8i_A Protein DDI1 homolog 1; protease, structural genomics, structural genomics consortiu retropepsin-like domain, protein turnover, hydrolase; 1.70A {Homo sapiens}
Probab=92.85  E-value=0.22  Score=44.07  Aligned_cols=112  Identities=15%  Similarity=0.233  Sum_probs=62.9

Q ss_pred             eEEEeEeEEEECCeEeecCCceEEEcCCCccccccHHHHHHHHHHHHHhhcccccccccccccccccccccccccCccEE
Q 009271          313 AYFVGVESYCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMR  392 (538)
Q Consensus       313 ~y~V~l~~i~Vgg~~l~~~~~~aiiDSGTs~t~LP~~~y~~l~~~~~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~it  392 (538)
                      .++|++   .|+|+.+.     ++||||.+.+.++.+..+++-  +..... .+.........   ..  .....++...
T Consensus        24 ~l~v~~---~Ing~~v~-----~LVDTGAs~s~Is~~~A~rlG--L~~~~~-~~~~~~a~g~G---~~--~~~g~v~~~~   87 (148)
T 3s8i_A           24 MLYINC---KVNGHPLK-----AFVDSGAQMTIMSQACAERCN--IMRLVD-RRWAGVAKGVG---TQ--RIIGRVHLAQ   87 (148)
T ss_dssp             CCEEEE---EETTEEEE-----EEECTTCSSCEEEHHHHHHTT--CGGGEE-GGGCEECCC------C--EEEEEEEEEE
T ss_pred             EEEEEE---EECCEEEE-----EEEeCCCCcEeeCHHHHHHcC--CccccC-cceeEEEEcCC---cc--EEEEEEEEEE
Confidence            444444   47888776     899999999999998877662  000000 00000000000   00  0001123344


Q ss_pred             EEEcCCeeeeeecceeEEeecCCcceEE-EEEEecCCCceeEcceeeeeeEEEEeCCCCEEEEeecC
Q 009271          393 LIFSKNQSFVVRNHIFSFPENEGFTVFC-LTVMSTDGDYGIIGQNFMMGHRIVFDRENLKLAWSHSK  458 (538)
Q Consensus       393 ~~f~gg~~~~v~~~~y~~~~~~~~~~~C-l~i~~~~~~~~IlG~~fl~~~yvVFD~e~~rIGfa~~~  458 (538)
                      +++ |+..+                 .| +.+.+......|||..+|+.+-.+.|.++++|-|.+.+
T Consensus        88 I~I-g~~~~-----------------~~~~~Vle~~~~d~LLGmD~L~~~~~~ID~~~~~L~l~~~~  136 (148)
T 3s8i_A           88 IQI-EGDFL-----------------QCSFSILEDQPMDMLLGLDMLRRHQCSIDLKKNVLVIGTTG  136 (148)
T ss_dssp             EEE-TTEEE-----------------EEEEEEETTCSSSEEECHHHHHHTTCEEETTTTEEECTTTC
T ss_pred             EEE-CCEEE-----------------EEEEEEeCCCCcCeeccHHHHHhCCEEEEcCCCEEEEccCC
Confidence            444 33321                 23 23333332358999999999999999999999997643


No 39 
>2i1a_A DNA damage-inducible protein DDI1; acid protease fold, dimer, retroviral protease domain, protein turnover; HET: DNA; 2.30A {Saccharomyces cerevisiae}
Probab=92.62  E-value=0.48  Score=41.45  Aligned_cols=103  Identities=19%  Similarity=0.227  Sum_probs=57.6

Q ss_pred             EEEECCeEeecCCceEEEcCCCccccccHHHHHHHHHHHHHhhcccccc--cccccccccccccccccccCccEEEEEcC
Q 009271          320 SYCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRIS--LQGNSWKYCYNASSEEMLKVPDMRLIFSK  397 (538)
Q Consensus       320 ~i~Vgg~~l~~~~~~aiiDSGTs~t~LP~~~y~~l~~~~~~~~~~~~~~--~~~~~~~~Cy~~~~~~~~~~P~it~~f~g  397 (538)
                      .+.|+|+.+.     ++||||.+.+.++.+..+++-  +.. ....+..  ..+..-..+       ........+.+ |
T Consensus        30 ~v~InG~~~~-----~LvDTGAs~s~is~~~a~~lg--l~~-~~~~~~~~~a~g~g~~~~-------~~~~~~~~i~i-g   93 (148)
T 2i1a_A           30 NIEINNYPVK-----AFVDTGAQTTIMSTRLAKKTG--LSR-MIDKRFIGEARGVGTGKI-------IGRIHQAQVKI-E   93 (148)
T ss_dssp             EEEETTEEEE-----EEECTTCSSCEEEHHHHHHHT--GGG-GCBCCCC------------------CEEEEEEEEEE-T
T ss_pred             EEEECCEEEE-----EEEECCCCccccCHHHHHHcC--CCc-cCCcceEEEEecCCCccc-------ccEEEEEEEEE-C
Confidence            3678888666     899999999999988766542  000 0011110  000000000       00112234445 4


Q ss_pred             CeeeeeecceeEEeecCCcceEEEEEEecCCCceeEcceeeeeeEEEEeCCCCEEEEe
Q 009271          398 NQSFVVRNHIFSFPENEGFTVFCLTVMSTDGDYGIIGQNFMMGHRIVFDRENLKLAWS  455 (538)
Q Consensus       398 g~~~~v~~~~y~~~~~~~~~~~Cl~i~~~~~~~~IlG~~fl~~~yvVFD~e~~rIGfa  455 (538)
                      +..+.+  ..              .+.+ .+...|||..||+.+.++.|.++++|-|.
T Consensus        94 ~~~~~~--~~--------------~vl~-~~~d~iLG~d~L~~~~~~ID~~~~~l~l~  134 (148)
T 2i1a_A           94 TQYIPC--SF--------------TVLD-TDIDVLIGLDMLKRHLACVDLKENVLRIA  134 (148)
T ss_dssp             TEEEEE--EE--------------EEEC-SSCSEEECHHHHHHTTCEEETTTTEEEET
T ss_pred             CEEece--eE--------------EEec-CCCCeEecHHHHhhCCEEEECCCCEEEEc
Confidence            443221  11              1222 12248999999999999999999999996


No 40 
>1fmb_A EIAV protease; hydrolase (acid proteinase), RNA-directed DNA polymerase, AS protease, endonuclease, polyprotein; HET: HYB; 1.80A {Equine infectious anemia virus} SCOP: b.50.1.1 PDB: 2fmb_A*
Probab=73.23  E-value=3.4  Score=33.99  Aligned_cols=25  Identities=24%  Similarity=0.284  Sum_probs=22.0

Q ss_pred             EEEEEecCCCeEEEEEEEcCCCceeEe
Q 009271          111 YTWIDIGTPNVSFLVALDAGSNLLWVP  137 (538)
Q Consensus       111 y~~v~iGtP~q~~~v~lDTGS~~~Wv~  137 (538)
                      +..|.||  .|.+.+++|||.|++-+.
T Consensus        10 ~v~v~I~--Gq~~e~LLDTGAD~TVl~   34 (104)
T 1fmb_A           10 TTIVLIN--DTPLNVLLDTGADTSVLT   34 (104)
T ss_dssp             EEEEEET--TEEEEEEECTTCSSCEEE
T ss_pred             EEEEEEC--CEEEEEEeccCCCcEEEc
Confidence            4568999  699999999999999997


No 41 
>2hs1_A HIV-1 protease; ultra-high resolution active site surface binding site, HYDR; HET: 017; 0.84A {Human immunodeficiency virus 1} PDB: 3nu4_A* 3tl9_A* 3tkw_A* 3tkg_A* 3ndu_A* 3ndt_A* 3k4v_A* 3a2o_A* 1fgc_C* 2a1e_A* 2aod_A* 2aoi_A* 2aoj_A* 2hb3_A* 2ien_A* 1sdt_A* 2z4o_A* 2zye_A* 2nmw_A* 3b7v_A* ...
Probab=72.25  E-value=3.8  Score=33.39  Aligned_cols=25  Identities=24%  Similarity=0.214  Sum_probs=21.7

Q ss_pred             EEEEEecCCCeEEEEEEEcCCCceeEe
Q 009271          111 YTWIDIGTPNVSFLVALDAGSNLLWVP  137 (538)
Q Consensus       111 y~~v~iGtP~q~~~v~lDTGS~~~Wv~  137 (538)
                      +..|.||  .|.+.+++|||.|++-+.
T Consensus        10 ~vtvkI~--Gq~~eaLLDTGAD~TVl~   34 (99)
T 2hs1_A           10 LVTIKIG--GQLKEALLDTGADDTIIE   34 (99)
T ss_dssp             EEEEEET--TEEEEEEECTTCSSEEES
T ss_pred             EEEEEEC--CEEEEEEeccCCCcEEEe
Confidence            3558898  699999999999999985


No 42 
>3ec0_A Protease; HIV-2, inhibitor, hydrolase; HET: GRL; 1.18A {Human immunodeficiency virus type 2} SCOP: b.50.1.1 PDB: 1hii_A* 1hsi_A 1hsh_A* 1idb_A* 1jld_A* 2mip_A 1ida_A* 3ebz_A* 3ecg_A* 3s45_A* 4upj_A* 1ivq_A* 1ivp_A 2hpf_A 3upj_A* 2hpe_A* 5upj_A* 6upj_A* 1sip_A 1tcw_A* ...
Probab=65.34  E-value=6  Score=32.15  Aligned_cols=25  Identities=24%  Similarity=0.120  Sum_probs=21.7

Q ss_pred             EEEEEecCCCeEEEEEEEcCCCceeEe
Q 009271          111 YTWIDIGTPNVSFLVALDAGSNLLWVP  137 (538)
Q Consensus       111 y~~v~iGtP~q~~~v~lDTGS~~~Wv~  137 (538)
                      +..|.||  .|.+.+++|||.|++-+.
T Consensus        10 ~vti~I~--Gq~~e~LLDTGAD~TVl~   34 (99)
T 3ec0_A           10 VVTAYIE--GQPVEVLLDTGADDSIVA   34 (99)
T ss_dssp             EEEEEET--TEEEEEEECTTCSSCEES
T ss_pred             eEEEEEC--CEEEEEEEecCCCceEEc
Confidence            4558898  699999999999999985


No 43 
>3liy_A Protease; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.86A {Human t-lymphotropic virus 1} PDB: 2b7f_A* 3liq_A* 3lit_A* 3liv_A* 3lix_A* 3lin_A*
Probab=64.65  E-value=6.2  Score=32.88  Aligned_cols=26  Identities=15%  Similarity=0.308  Sum_probs=22.3

Q ss_pred             EEEec---CCCeEEEEEEEcCCCceeEec
Q 009271          113 WIDIG---TPNVSFLVALDAGSNLLWVPC  138 (538)
Q Consensus       113 ~v~iG---tP~q~~~v~lDTGS~~~Wv~c  138 (538)
                      .|.||   +|+|.+..++|||-|++-+.-
T Consensus        14 tikI~~~~~~Gq~~eaLLDTGADdTVl~~   42 (116)
T 3liy_A           14 KAQVDTQTSHPKTIEALLDTGADMTVIPI   42 (116)
T ss_dssp             EEEEECSSSCCEEEEEEECTTBSSCEEEG
T ss_pred             EEEEccccCCCeEeEEEeccCCCccEEec
Confidence            35666   789999999999999999975


No 44 
>2hah_A Protease, retropepsin; retroviral, aspartyl, hydrolase-hydrolase complex; HET: 3TL; 1.70A {Feline immunodeficiency virus} PDB: 3ogp_A* 3ogq_A* 2fiv_A* 6fiv_A* 3fiv_A* 5fiv_A* 4fiv_A* 1fiv_A* 1b11_A*
Probab=59.95  E-value=8.1  Score=32.37  Aligned_cols=23  Identities=17%  Similarity=0.252  Sum_probs=20.8

Q ss_pred             EEecCCCeEEEEEEEcCCCceeEec
Q 009271          114 IDIGTPNVSFLVALDAGSNLLWVPC  138 (538)
Q Consensus       114 v~iGtP~q~~~v~lDTGS~~~Wv~c  138 (538)
                      |.||  .|.+.+++|||.|++-+.-
T Consensus        18 ikI~--Gq~~eaLLDTGAD~TVi~~   40 (116)
T 2hah_A           18 IFVN--GYPIKFLLDTGADITVLNR   40 (116)
T ss_dssp             EEET--TEEEEEEECTTCSSCEEEG
T ss_pred             EEEC--CEEEEEEecCCCCcEEEcc
Confidence            8898  6999999999999998863


No 45 
>2i1a_A DNA damage-inducible protein DDI1; acid protease fold, dimer, retroviral protease domain, protein turnover; HET: DNA; 2.30A {Saccharomyces cerevisiae}
Probab=56.85  E-value=8.4  Score=33.24  Aligned_cols=30  Identities=20%  Similarity=0.264  Sum_probs=25.5

Q ss_pred             cEEEEEEEecCCCeEEEEEEEcCCCceeEecC
Q 009271          108 WLHYTWIDIGTPNVSFLVALDAGSNLLWVPCQ  139 (538)
Q Consensus       108 ~~yy~~v~iGtP~q~~~v~lDTGS~~~Wv~c~  139 (538)
                      ..+|+++.|+  .+++.+++|||++.+-+.-.
T Consensus        25 ~~~~v~v~In--G~~~~~LvDTGAs~s~is~~   54 (148)
T 2i1a_A           25 PMLYINIEIN--NYPVKAFVDTGAQTTIMSTR   54 (148)
T ss_dssp             CCCEEEEEET--TEEEEEEECTTCSSCEEEHH
T ss_pred             ceEEEEEEEC--CEEEEEEEECCCCccccCHH
Confidence            4578889998  68999999999999988754


No 46 
>3s8i_A Protein DDI1 homolog 1; protease, structural genomics, structural genomics consortiu retropepsin-like domain, protein turnover, hydrolase; 1.70A {Homo sapiens}
Probab=48.68  E-value=14  Score=32.19  Aligned_cols=29  Identities=10%  Similarity=0.220  Sum_probs=25.5

Q ss_pred             EEEEEEEecCCCeEEEEEEEcCCCceeEecC
Q 009271          109 LHYTWIDIGTPNVSFLVALDAGSNLLWVPCQ  139 (538)
Q Consensus       109 ~yy~~v~iGtP~q~~~v~lDTGS~~~Wv~c~  139 (538)
                      .+|+++.|.  .+++.+++|||++.+-+.-+
T Consensus        24 ~l~v~~~In--g~~v~~LVDTGAs~s~Is~~   52 (148)
T 3s8i_A           24 MLYINCKVN--GHPLKAFVDSGAQMTIMSQA   52 (148)
T ss_dssp             CCEEEEEET--TEEEEEEECTTCSSCEEEHH
T ss_pred             EEEEEEEEC--CEEEEEEEeCCCCcEeeCHH
Confidence            578888997  68999999999999999865


No 47 
>3sqf_A Protease; folded monomer, retropepsin, D-type retrovirus; 1.63A {Mason-pfizer monkey virus} SCOP: b.50.1.1 PDB: 1nso_A
Probab=47.68  E-value=19  Score=30.00  Aligned_cols=25  Identities=8%  Similarity=0.152  Sum_probs=21.5

Q ss_pred             EEEEecCCCeEEEEEEEcCCCceeEec
Q 009271          112 TWIDIGTPNVSFLVALDAGSNLLWVPC  138 (538)
Q Consensus       112 ~~v~iGtP~q~~~v~lDTGS~~~Wv~c  138 (538)
                      ..+.||  .|.+..+||||-|++-+.-
T Consensus        12 vti~I~--Gq~~eaLLDTGADdTVi~~   36 (114)
T 3sqf_A           12 LTLWLD--DKMFTGLINTGADVTIIKL   36 (114)
T ss_dssp             EEEEET--TEEEEEEECTTCSSCEEEG
T ss_pred             EEEEEC--CEEEEEEEccCCCceEEec
Confidence            347888  6999999999999999964


No 48 
>3slz_A GAG-Pro-POL polyprotein; beta sheet and dimer, protease, peptide inhibitor, TL-3 PEPS virus, hydrolase-hydrolase inhibitor complex; HET: 3TL; 1.40A {Dg-75 murine leukemia virus} PDB: 3nr6_A* 3sm1_A* 3sm2_A* 4exh_A*
Probab=35.66  E-value=33  Score=29.30  Aligned_cols=25  Identities=12%  Similarity=0.201  Sum_probs=21.2

Q ss_pred             EEEEEecCCCeEEEEEEEcCCCceeEe
Q 009271          111 YTWIDIGTPNVSFLVALDAGSNLLWVP  137 (538)
Q Consensus       111 y~~v~iGtP~q~~~v~lDTGS~~~Wv~  137 (538)
                      ++.+.|+  .|.+..+||||.+.+-+.
T Consensus        24 ~v~i~I~--G~~~~~LlDTGAd~tVl~   48 (132)
T 3slz_A           24 RITLKVG--GQPVTFLVDTGAQHSVLT   48 (132)
T ss_dssp             EEEEEET--TEEEEEEECTTCSSCEEC
T ss_pred             EEEEEEC--CEEEEEEEeCCCCeEEEc
Confidence            3457888  689999999999999986


No 49 
>1lya_A Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_A* 1lyw_A*
Probab=31.45  E-value=38  Score=26.97  Aligned_cols=32  Identities=25%  Similarity=0.507  Sum_probs=22.4

Q ss_pred             ceEEEeEeEEEECCeEeecCCceEEEcCCCccccccHH
Q 009271          312 DAYFVGVESYCIGNSCLTQSGFQALVDSGASFTFLPTE  349 (538)
Q Consensus       312 ~~y~V~l~~i~Vgg~~l~~~~~~aiiDSGTs~t~LP~~  349 (538)
                      ..|.+   .|.||.-   ...+.++||||.+.+.+|..
T Consensus        13 ~~Y~~---~i~iGTP---~Q~~~v~~DTGSs~lWv~~~   44 (97)
T 1lya_A           13 AQYYG---EIGIGTP---PQCFTVVFDTGSSNLWVPSI   44 (97)
T ss_dssp             TEEEE---EEEETTT---TEEEEEEEETTCCCEEEEBT
T ss_pred             CeEEE---EEEECCC---CeEEEEEEeCCCCceEEeEc
Confidence            45655   4778832   13455999999999998854


No 50 
>2rsp_A RSV protease; hydrolase(aspartyl proteinase); 2.00A {Rous sarcoma virus} SCOP: b.50.1.1 PDB: 1mvp_A 1bai_A*
Probab=30.52  E-value=40  Score=28.46  Aligned_cols=19  Identities=21%  Similarity=0.368  Sum_probs=16.7

Q ss_pred             CeEEEEEEEcCCCceeEec
Q 009271          120 NVSFLVALDAGSNLLWVPC  138 (538)
Q Consensus       120 ~q~~~v~lDTGS~~~Wv~c  138 (538)
                      .|.+..++|||-|++-+.-
T Consensus        29 gq~~eaLLDTGAD~TVl~~   47 (124)
T 2rsp_A           29 SVYITALLDSGADITIISE   47 (124)
T ss_dssp             EEEEEEEECTTCSSCEEET
T ss_pred             CEEEEEEecCCCCcEEEec
Confidence            5778999999999999974


No 51 
>3ka2_A [L-Ala51;Gly51']HIV-1 protease; beta-barrel, hydrolase-hydrolase inhibitor complex; HET: YCM 2NC; 1.40A {Synthetic} PDB: 3fsm_A* 3gi0_A* 2o40_A* 3hzc_A* 3hlo_A* 3iaw_A* 3nxe_A* 3nxn_A* 4epj_A 4ep2_A 4ep3_A 4eq0_A 4eqj_A 1hvc_A* 1g6l_A 2whh_A* 1lv1_A* 3dox_A 3kt5_A 3kt2_A ...
Probab=28.63  E-value=47  Score=30.54  Aligned_cols=24  Identities=25%  Similarity=0.201  Sum_probs=21.0

Q ss_pred             EEEEecCCCeEEEEEEEcCCCceeEe
Q 009271          112 TWIDIGTPNVSFLVALDAGSNLLWVP  137 (538)
Q Consensus       112 ~~v~iGtP~q~~~v~lDTGS~~~Wv~  137 (538)
                      +.|.||  .|.+..++|||.|.+-+.
T Consensus        11 vtv~I~--Gq~~e~LLDTGAD~TVl~   34 (203)
T 3ka2_A           11 VTIRIG--GQLKEALLDTGADDTVIE   34 (203)
T ss_dssp             EEEEET--TEEEEEEECTTCSSCEEC
T ss_pred             EEEEEC--CEEEEEEEecCCCceEEe
Confidence            458888  699999999999999885


No 52 
>1uff_A Intersectin 2; beta barrel, SH3 domain, endocytosis, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=20.75  E-value=1.6e+02  Score=22.70  Aligned_cols=15  Identities=13%  Similarity=0.255  Sum_probs=11.4

Q ss_pred             CEEEEeecCCCcccc
Q 009271          450 LKLAWSHSKCEEVID  464 (538)
Q Consensus       450 ~rIGfa~~~C~~~~~  464 (538)
                      .+.||-+.++-+.-+
T Consensus        49 g~~G~~P~~yv~~~~   63 (93)
T 1uff_A           49 GNFGWFPCNYVEKMP   63 (93)
T ss_dssp             TEEEEEETTTEEECC
T ss_pred             CCEEEechHHeEEcC
Confidence            689999999876433


No 53 
>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2
Probab=20.36  E-value=1.1e+02  Score=29.67  Aligned_cols=30  Identities=17%  Similarity=0.401  Sum_probs=22.5

Q ss_pred             ceEEEeEeEEEECCeEeecCCceEEEcCCCccccccHH
Q 009271          312 DAYFVGVESYCIGNSCLTQSGFQALVDSGASFTFLPTE  349 (538)
Q Consensus       312 ~~y~V~l~~i~Vgg~~l~~~~~~aiiDSGTs~t~LP~~  349 (538)
                      ..|.+   .|.||.     ..+.++||||++.+.+|..
T Consensus        14 ~~Y~~---~i~iG~-----Q~~~v~~DTGSs~lWv~~~   43 (325)
T 1ibq_A           14 EEYLT---PVTVGK-----STLHLDFDTGSADLWVFSD   43 (325)
T ss_dssp             SCEEE---EEEEBT-----EEEEEEEETTCCCEEEECT
T ss_pred             CEEEE---EEEECC-----EEEEEEEeCCCccceEeeC
Confidence            56754   467883     4456999999999999864


Done!