Query 009272
Match_columns 538
No_of_seqs 203 out of 2065
Neff 9.3
Searched_HMMs 46136
Date Thu Mar 28 22:32:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009272.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009272hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02785 Protein HOTHEAD 100.0 2E-81 4.2E-86 665.5 48.2 510 27-537 26-583 (587)
2 KOG1238 Glucose dehydrogenase/ 100.0 1.1E-79 2.3E-84 625.6 34.7 479 33-535 44-617 (623)
3 PRK02106 choline dehydrogenase 100.0 1.8E-70 3.9E-75 587.4 43.5 465 43-534 2-535 (560)
4 TIGR01810 betA choline dehydro 100.0 4.9E-70 1.1E-74 581.1 44.3 459 48-533 1-529 (532)
5 COG2303 BetA Choline dehydroge 100.0 3E-63 6.5E-68 523.9 37.1 464 43-533 4-536 (542)
6 TIGR02462 pyranose_ox pyranose 100.0 4.9E-48 1.1E-52 401.9 34.3 436 47-533 1-542 (544)
7 PF00732 GMC_oxred_N: GMC oxid 100.0 7.8E-42 1.7E-46 339.0 14.4 263 47-320 1-295 (296)
8 PF05199 GMC_oxred_C: GMC oxid 100.0 8.8E-32 1.9E-36 237.2 11.2 139 379-526 1-144 (144)
9 PRK06481 fumarate reductase fl 99.6 1.2E-14 2.6E-19 154.2 19.1 228 1-287 1-256 (506)
10 PRK12845 3-ketosteroid-delta-1 99.5 2.3E-13 5E-18 145.3 15.9 62 217-288 223-284 (564)
11 PRK07121 hypothetical protein; 99.5 5.4E-13 1.2E-17 141.5 16.3 64 217-289 183-246 (492)
12 PRK12835 3-ketosteroid-delta-1 99.5 4.9E-13 1.1E-17 143.7 16.0 61 219-288 221-281 (584)
13 PRK08274 tricarballylate dehyd 99.5 4E-13 8.6E-18 141.8 14.8 194 44-293 2-203 (466)
14 PLN00128 Succinate dehydrogena 99.5 1E-12 2.3E-17 142.0 17.7 59 217-284 193-252 (635)
15 COG2081 Predicted flavoprotein 99.5 5.2E-13 1.1E-17 130.5 13.3 190 45-310 2-193 (408)
16 PRK12844 3-ketosteroid-delta-1 99.5 1.4E-12 3.1E-17 139.6 16.8 62 217-288 214-275 (557)
17 PF00890 FAD_binding_2: FAD bi 99.4 5.8E-13 1.3E-17 138.7 12.1 182 48-283 1-204 (417)
18 PRK06175 L-aspartate oxidase; 99.4 2.3E-12 5E-17 133.9 16.0 56 217-283 134-190 (433)
19 PRK12837 3-ketosteroid-delta-1 99.4 3.4E-12 7.3E-17 135.7 16.6 55 221-285 184-238 (513)
20 PRK07573 sdhA succinate dehydr 99.4 2.8E-12 6.1E-17 139.1 15.2 55 25-79 9-69 (640)
21 PRK12834 putative FAD-binding 99.4 5E-12 1.1E-16 135.7 16.2 36 44-79 2-38 (549)
22 TIGR01813 flavo_cyto_c flavocy 99.4 3.7E-12 8.1E-17 133.4 14.8 62 217-287 136-197 (439)
23 PRK12839 hypothetical protein; 99.4 5.1E-12 1.1E-16 135.4 14.4 62 217-287 220-281 (572)
24 PF03486 HI0933_like: HI0933-l 99.4 8.9E-13 1.9E-17 134.6 7.7 190 47-310 1-192 (409)
25 PRK06263 sdhA succinate dehydr 99.3 1.6E-11 3.5E-16 131.6 15.6 58 217-283 140-198 (543)
26 PRK06452 sdhA succinate dehydr 99.3 2E-11 4.3E-16 131.1 16.1 56 217-282 142-198 (566)
27 PTZ00306 NADH-dependent fumara 99.3 1.9E-11 4.2E-16 141.0 16.8 58 223-285 559-623 (1167)
28 PRK07843 3-ketosteroid-delta-1 99.3 3.1E-11 6.7E-16 129.5 16.8 63 218-290 215-277 (557)
29 PRK08958 sdhA succinate dehydr 99.3 2.9E-11 6.3E-16 130.2 16.6 58 217-283 149-207 (588)
30 PRK09078 sdhA succinate dehydr 99.3 2.6E-11 5.7E-16 130.9 16.2 58 217-283 155-213 (598)
31 PRK06134 putative FAD-binding 99.3 3E-11 6.5E-16 130.3 16.3 62 217-288 223-284 (581)
32 PLN02815 L-aspartate oxidase 99.3 1.7E-11 3.7E-16 131.4 14.3 61 217-283 161-223 (594)
33 PRK12842 putative succinate de 99.3 4.8E-11 1E-15 128.7 17.4 62 218-289 221-282 (574)
34 PRK07395 L-aspartate oxidase; 99.3 1.7E-11 3.6E-16 131.0 13.6 57 217-283 140-198 (553)
35 PRK11101 glpA sn-glycerol-3-ph 99.3 1.9E-11 4E-16 130.9 13.8 194 45-292 5-220 (546)
36 PTZ00139 Succinate dehydrogena 99.3 2.8E-11 6.1E-16 130.9 15.2 58 217-283 172-230 (617)
37 PRK12843 putative FAD-binding 99.3 4.1E-11 8.8E-16 129.2 16.0 63 217-289 227-289 (578)
38 PRK07804 L-aspartate oxidase; 99.3 4.9E-11 1.1E-15 127.5 15.6 36 44-79 14-50 (541)
39 PRK08071 L-aspartate oxidase; 99.3 4.3E-11 9.3E-16 127.0 14.8 56 217-283 136-191 (510)
40 PRK09077 L-aspartate oxidase; 99.3 6E-11 1.3E-15 126.8 15.8 57 222-283 150-208 (536)
41 PRK08641 sdhA succinate dehydr 99.3 3.9E-11 8.5E-16 129.3 14.3 50 225-283 151-201 (589)
42 PRK05945 sdhA succinate dehydr 99.3 5.9E-11 1.3E-15 128.0 15.5 57 217-283 141-198 (575)
43 PRK08626 fumarate reductase fl 99.3 4.4E-11 9.5E-16 130.1 13.9 57 217-283 164-221 (657)
44 PRK09231 fumarate reductase fl 99.2 1E-10 2.2E-15 126.0 15.5 52 222-283 145-197 (582)
45 PLN02464 glycerol-3-phosphate 99.2 5.7E-11 1.2E-15 128.7 13.5 77 205-291 223-304 (627)
46 PRK07057 sdhA succinate dehydr 99.2 1.1E-10 2.5E-15 125.9 15.6 58 217-283 154-212 (591)
47 TIGR00551 nadB L-aspartate oxi 99.2 1.1E-10 2.5E-15 123.5 15.0 56 217-283 134-190 (488)
48 TIGR01176 fum_red_Fp fumarate 99.2 1.6E-10 3.5E-15 124.2 15.2 52 222-283 144-196 (580)
49 PRK07803 sdhA succinate dehydr 99.2 1.4E-10 3E-15 125.9 14.4 35 45-79 7-42 (626)
50 TIGR01812 sdhA_frdA_Gneg succi 99.2 1.7E-10 3.6E-15 124.6 15.0 57 217-283 135-192 (566)
51 PRK08205 sdhA succinate dehydr 99.2 2.3E-10 5.1E-15 123.4 15.1 58 217-283 146-207 (583)
52 COG0579 Predicted dehydrogenas 99.2 2.1E-10 4.5E-15 116.1 13.4 193 45-294 2-222 (429)
53 PF01266 DAO: FAD dependent ox 99.2 1.9E-11 4.2E-16 124.2 5.6 60 217-292 153-212 (358)
54 PRK06069 sdhA succinate dehydr 99.2 2.5E-10 5.4E-15 123.3 13.7 57 217-283 143-201 (577)
55 PRK07512 L-aspartate oxidase; 99.2 3.5E-10 7.7E-15 120.2 14.2 56 217-283 142-198 (513)
56 TIGR01811 sdhA_Bsu succinate d 99.2 3.3E-10 7.1E-15 122.4 13.8 52 223-283 145-197 (603)
57 PRK12266 glpD glycerol-3-phosp 99.1 1.7E-10 3.6E-15 122.6 10.7 38 42-79 2-40 (508)
58 PTZ00383 malate:quinone oxidor 99.1 7.6E-10 1.6E-14 116.1 14.5 61 217-293 217-283 (497)
59 PRK08275 putative oxidoreducta 99.1 6.3E-10 1.4E-14 119.6 14.1 58 217-283 143-201 (554)
60 TIGR02061 aprA adenosine phosp 99.1 7.4E-10 1.6E-14 119.0 14.4 53 221-282 136-191 (614)
61 COG0578 GlpA Glycerol-3-phosph 99.1 2.3E-09 5E-14 110.8 16.7 78 220-309 173-254 (532)
62 TIGR02734 crtI_fam phytoene de 99.1 1.9E-09 4E-14 115.1 16.1 70 205-288 213-282 (502)
63 PRK06854 adenylylsulfate reduc 99.1 1.1E-09 2.3E-14 118.7 13.8 56 217-282 138-195 (608)
64 PRK13369 glycerol-3-phosphate 99.1 7.2E-10 1.6E-14 117.8 12.2 37 43-79 3-40 (502)
65 PRK04176 ribulose-1,5-biphosph 99.1 1.4E-09 2.9E-14 104.8 12.8 36 44-79 23-59 (257)
66 COG0029 NadB Aspartate oxidase 99.1 1.5E-09 3.3E-14 108.9 13.1 57 217-282 139-196 (518)
67 COG1233 Phytoene dehydrogenase 99.1 6.4E-09 1.4E-13 109.9 18.6 39 45-83 2-41 (487)
68 PRK12409 D-amino acid dehydrog 99.1 1E-09 2.2E-14 114.0 12.4 33 47-79 2-35 (410)
69 TIGR01320 mal_quin_oxido malat 99.1 4.8E-09 1E-13 110.4 17.2 82 201-293 165-250 (483)
70 TIGR01373 soxB sarcosine oxida 99.0 1.8E-09 4E-14 112.0 13.5 36 44-79 28-66 (407)
71 PF01946 Thi4: Thi4 family; PD 99.0 3E-10 6.5E-15 102.6 5.9 35 45-79 16-51 (230)
72 PRK05257 malate:quinone oxidor 99.0 5.5E-09 1.2E-13 110.0 15.9 66 217-293 189-256 (494)
73 TIGR02733 desat_CrtD C-3',4' d 99.0 4.3E-08 9.3E-13 104.4 22.3 70 207-286 228-298 (492)
74 TIGR01377 soxA_mon sarcosine o 99.0 2.3E-09 4.9E-14 110.3 11.7 33 47-79 1-34 (380)
75 PRK13800 putative oxidoreducta 99.0 2E-09 4.2E-14 121.8 12.1 51 223-283 155-206 (897)
76 PRK11259 solA N-methyltryptoph 99.0 2.2E-09 4.8E-14 110.2 11.2 35 45-79 2-37 (376)
77 PLN02661 Putative thiazole syn 99.0 5E-09 1.1E-13 103.3 12.6 36 44-79 90-127 (357)
78 PRK00711 D-amino acid dehydrog 99.0 6.1E-09 1.3E-13 108.5 14.1 32 48-79 2-34 (416)
79 TIGR02485 CobZ_N-term precorri 99.0 2.3E-09 4.9E-14 112.1 10.7 61 217-289 129-190 (432)
80 TIGR03329 Phn_aa_oxid putative 99.0 1.9E-09 4.2E-14 113.4 10.0 39 41-79 19-60 (460)
81 PRK11728 hydroxyglutarate oxid 99.0 2.5E-09 5.5E-14 110.4 10.7 34 46-79 2-38 (393)
82 TIGR00292 thiazole biosynthesi 99.0 4.3E-09 9.3E-14 101.0 11.4 35 45-79 20-55 (254)
83 COG1053 SdhA Succinate dehydro 99.0 2.8E-09 6.1E-14 112.9 11.0 57 217-282 144-202 (562)
84 PRK08401 L-aspartate oxidase; 98.9 1.2E-08 2.7E-13 107.3 14.7 32 47-78 2-34 (466)
85 COG1635 THI4 Ribulose 1,5-bisp 98.9 5.7E-09 1.2E-13 93.7 9.7 34 46-79 30-64 (262)
86 KOG2820 FAD-dependent oxidored 98.9 5.2E-09 1.1E-13 99.7 9.9 40 42-81 3-43 (399)
87 KOG0042 Glycerol-3-phosphate d 98.9 3.7E-09 8E-14 106.3 9.1 73 207-289 217-293 (680)
88 PF12831 FAD_oxidored: FAD dep 98.9 9.6E-10 2.1E-14 114.4 3.6 59 220-292 99-157 (428)
89 PRK13339 malate:quinone oxidor 98.9 7.1E-08 1.5E-12 101.0 17.4 66 217-293 190-257 (497)
90 TIGR03364 HpnW_proposed FAD de 98.8 4.3E-09 9.3E-14 107.6 7.1 33 47-79 1-34 (365)
91 PRK10157 putative oxidoreducta 98.8 2.7E-08 5.9E-13 103.6 12.5 36 45-80 4-40 (428)
92 PRK05192 tRNA uridine 5-carbox 98.8 3E-08 6.5E-13 104.8 11.7 35 44-78 2-37 (618)
93 COG3573 Predicted oxidoreducta 98.8 7.8E-08 1.7E-12 91.4 13.1 36 44-79 3-39 (552)
94 COG0644 FixC Dehydrogenases (f 98.8 2.8E-08 6.1E-13 102.5 11.1 36 45-80 2-38 (396)
95 PTZ00363 rab-GDP dissociation 98.8 5.4E-08 1.2E-12 100.7 12.8 46 43-88 1-47 (443)
96 PRK01747 mnmC bifunctional tRN 98.7 5E-08 1.1E-12 107.4 11.7 34 46-79 260-294 (662)
97 KOG1298 Squalene monooxygenase 98.7 4.7E-08 1E-12 94.7 9.9 55 220-285 157-211 (509)
98 PRK10015 oxidoreductase; Provi 98.7 5.5E-08 1.2E-12 101.3 10.9 36 45-80 4-40 (429)
99 COG0665 DadA Glycine/D-amino a 98.7 2.3E-07 5E-12 95.6 13.9 36 44-79 2-38 (387)
100 PF06039 Mqo: Malate:quinone o 98.7 8.5E-07 1.8E-11 89.2 16.8 66 217-293 187-254 (488)
101 PRK05976 dihydrolipoamide dehy 98.7 1.4E-07 2.9E-12 99.9 11.9 36 43-78 1-37 (472)
102 PRK13977 myosin-cross-reactive 98.7 1.8E-07 3.8E-12 98.1 11.7 63 217-283 232-294 (576)
103 PRK06467 dihydrolipoamide dehy 98.6 1.5E-07 3.3E-12 99.3 10.8 35 44-78 2-37 (471)
104 TIGR00275 flavoprotein, HI0933 98.6 2.5E-07 5.5E-12 95.4 12.0 31 50-80 1-32 (400)
105 TIGR02730 carot_isom carotene 98.6 1.9E-07 4.2E-12 99.3 11.1 71 204-288 222-292 (493)
106 PF01134 GIDA: Glucose inhibit 98.6 2.3E-07 5E-12 93.1 9.3 48 221-283 106-153 (392)
107 PLN02172 flavin-containing mon 98.6 8.1E-07 1.8E-11 93.0 13.7 37 43-79 7-44 (461)
108 KOG2415 Electron transfer flav 98.5 1.7E-07 3.8E-12 91.6 7.3 64 220-292 192-268 (621)
109 PRK07818 dihydrolipoamide dehy 98.5 6.6E-07 1.4E-11 94.5 12.4 34 45-78 3-37 (466)
110 KOG2404 Fumarate reductase, fl 98.5 3E-07 6.6E-12 87.1 8.3 51 224-284 158-208 (477)
111 PLN02507 glutathione reductase 98.5 5.8E-07 1.3E-11 95.4 11.4 33 44-76 23-56 (499)
112 PLN02985 squalene monooxygenas 98.5 3.2E-06 7E-11 89.8 16.8 37 43-79 40-77 (514)
113 PRK05249 soluble pyridine nucl 98.5 7E-07 1.5E-11 94.3 11.3 36 44-79 3-39 (461)
114 PRK06185 hypothetical protein; 98.5 1.1E-06 2.3E-11 91.4 12.5 37 43-79 3-40 (407)
115 PRK08773 2-octaprenyl-3-methyl 98.5 1.6E-06 3.5E-11 89.6 12.5 37 43-79 3-40 (392)
116 PF13738 Pyr_redox_3: Pyridine 98.4 2E-07 4.3E-12 86.8 5.1 60 217-291 87-147 (203)
117 PRK06416 dihydrolipoamide dehy 98.4 1.1E-06 2.4E-11 92.7 11.1 34 45-78 3-37 (462)
118 TIGR02032 GG-red-SF geranylger 98.4 1.1E-06 2.4E-11 86.7 9.7 33 47-79 1-34 (295)
119 PRK07208 hypothetical protein; 98.4 3.9E-06 8.4E-11 89.2 14.3 40 43-82 1-41 (479)
120 PRK06847 hypothetical protein; 98.4 1.7E-06 3.6E-11 88.9 11.1 36 44-79 2-38 (375)
121 PRK07364 2-octaprenyl-6-methox 98.4 2.7E-06 6E-11 88.5 12.2 37 44-80 16-53 (415)
122 COG2072 TrkA Predicted flavopr 98.4 3.8E-06 8.3E-11 87.5 13.0 37 43-79 5-43 (443)
123 PLN02697 lycopene epsilon cycl 98.4 2.1E-06 4.5E-11 90.9 11.2 34 45-78 107-141 (529)
124 TIGR02023 BchP-ChlP geranylger 98.4 2.8E-06 6.1E-11 87.6 11.7 31 47-77 1-32 (388)
125 PRK07608 ubiquinone biosynthes 98.4 4.1E-06 8.8E-11 86.4 12.7 35 45-79 4-39 (388)
126 PRK05675 sdhA succinate dehydr 98.3 7E-06 1.5E-10 88.6 14.4 58 217-283 132-190 (570)
127 KOG2844 Dimethylglycine dehydr 98.3 1.7E-06 3.7E-11 89.6 8.7 76 201-292 174-252 (856)
128 KOG4254 Phytoene desaturase [C 98.3 3.3E-06 7.3E-11 83.8 10.0 79 203-295 256-334 (561)
129 PRK07045 putative monooxygenas 98.3 7.4E-06 1.6E-10 84.5 13.1 37 44-80 3-40 (388)
130 PRK06126 hypothetical protein; 98.3 1.3E-05 2.8E-10 86.5 15.4 36 44-79 5-41 (545)
131 KOG2853 Possible oxidoreductas 98.3 9.8E-06 2.1E-10 77.6 12.0 36 45-80 85-125 (509)
132 TIGR03452 mycothione_red mycot 98.3 4.2E-06 9.1E-11 87.9 10.7 32 46-78 2-33 (452)
133 TIGR00136 gidA glucose-inhibit 98.3 5.9E-06 1.3E-10 87.5 11.2 33 47-79 1-34 (617)
134 COG3380 Predicted NAD/FAD-depe 98.3 9.7E-06 2.1E-10 75.5 11.1 33 47-79 2-35 (331)
135 TIGR03143 AhpF_homolog putativ 98.2 2.7E-06 5.8E-11 91.6 8.7 35 44-78 2-37 (555)
136 PRK06183 mhpA 3-(3-hydroxyphen 98.2 1.2E-05 2.7E-10 86.4 13.3 37 44-80 8-45 (538)
137 COG2509 Uncharacterized FAD-de 98.2 1.7E-05 3.6E-10 79.4 12.9 200 42-280 14-228 (486)
138 PTZ00058 glutathione reductase 98.2 1.2E-06 2.7E-11 93.5 5.4 34 45-78 47-81 (561)
139 PRK08244 hypothetical protein; 98.2 7.2E-06 1.6E-10 87.4 11.1 34 46-79 2-36 (493)
140 TIGR01421 gluta_reduc_1 glutat 98.2 6.9E-07 1.5E-11 93.8 3.2 34 45-78 1-35 (450)
141 PRK06116 glutathione reductase 98.2 8.6E-07 1.9E-11 93.3 3.8 35 44-78 2-37 (450)
142 PRK06370 mercuric reductase; V 98.2 9E-07 1.9E-11 93.5 4.0 36 43-78 2-38 (463)
143 PF01494 FAD_binding_3: FAD bi 98.2 7.9E-07 1.7E-11 90.2 3.2 35 46-80 1-36 (356)
144 KOG0405 Pyridine nucleotide-di 98.2 6.5E-06 1.4E-10 79.1 8.8 35 44-78 18-53 (478)
145 PRK05714 2-octaprenyl-3-methyl 98.2 1.4E-05 3.1E-10 82.9 12.3 33 46-78 2-35 (405)
146 PRK07333 2-octaprenyl-6-methox 98.2 1E-05 2.2E-10 83.9 11.0 33 47-79 2-37 (403)
147 COG1249 Lpd Pyruvate/2-oxoglut 98.2 1.1E-06 2.4E-11 90.8 3.4 35 44-78 2-37 (454)
148 PRK06834 hypothetical protein; 98.2 9.3E-06 2E-10 86.0 10.5 34 46-79 3-37 (488)
149 TIGR01988 Ubi-OHases Ubiquinon 98.2 1.6E-05 3.4E-10 81.9 12.0 33 48-80 1-34 (385)
150 PRK06184 hypothetical protein; 98.1 1.6E-05 3.4E-10 84.9 12.0 35 45-79 2-37 (502)
151 PRK08163 salicylate hydroxylas 98.1 3.4E-06 7.3E-11 87.3 6.6 36 44-79 2-38 (396)
152 TIGR01424 gluta_reduc_2 glutat 98.1 1.2E-06 2.6E-11 91.9 3.3 33 46-78 2-35 (446)
153 PRK08243 4-hydroxybenzoate 3-m 98.1 1.5E-05 3.2E-10 82.4 11.2 34 46-79 2-36 (392)
154 PRK07845 flavoprotein disulfid 98.1 1.4E-05 3.1E-10 84.3 11.1 31 48-78 3-34 (466)
155 KOG1335 Dihydrolipoamide dehyd 98.1 2E-05 4.3E-10 76.8 10.8 35 45-79 38-73 (506)
156 KOG2960 Protein involved in th 98.1 8.2E-06 1.8E-10 72.9 7.5 35 46-80 76-113 (328)
157 TIGR01790 carotene-cycl lycope 98.1 1.1E-05 2.4E-10 83.2 9.8 32 48-79 1-33 (388)
158 COG0654 UbiH 2-polyprenyl-6-me 98.1 1.9E-05 4E-10 81.4 11.3 32 46-77 2-34 (387)
159 PF13450 NAD_binding_8: NAD(P) 98.1 1.9E-06 4.2E-11 64.5 2.9 29 51-79 1-30 (68)
160 TIGR01292 TRX_reduct thioredox 98.1 2.4E-05 5.2E-10 77.4 11.7 32 47-78 1-33 (300)
161 PRK07251 pyridine nucleotide-d 98.1 2.7E-06 5.9E-11 89.2 4.7 35 45-79 2-37 (438)
162 PRK07190 hypothetical protein; 98.1 6.2E-06 1.4E-10 87.2 7.5 35 45-79 4-39 (487)
163 TIGR01984 UbiH 2-polyprenyl-6- 98.1 2.2E-05 4.7E-10 80.8 11.2 33 48-80 1-35 (382)
164 PLN02546 glutathione reductase 98.1 2.4E-06 5.1E-11 91.4 4.0 33 44-76 77-110 (558)
165 PF05834 Lycopene_cycl: Lycope 98.1 1.8E-05 3.9E-10 81.0 10.2 32 48-79 1-35 (374)
166 KOG4716 Thioredoxin reductase 98.1 1.2E-05 2.7E-10 76.8 8.1 37 42-78 15-52 (503)
167 PRK08010 pyridine nucleotide-d 98.1 2.3E-06 5E-11 89.8 3.7 35 45-79 2-37 (441)
168 PRK06115 dihydrolipoamide dehy 98.1 2.4E-06 5.1E-11 90.2 3.6 33 46-78 3-36 (466)
169 PRK15317 alkyl hydroperoxide r 98.1 1.9E-05 4E-10 84.6 10.2 33 44-76 209-242 (517)
170 PRK07588 hypothetical protein; 98.0 2.4E-05 5.2E-10 80.8 10.5 32 48-79 2-34 (391)
171 TIGR03140 AhpF alkyl hydropero 98.0 2E-05 4.3E-10 84.2 9.9 33 44-76 210-243 (515)
172 PRK08132 FAD-dependent oxidore 98.0 6.4E-05 1.4E-09 81.2 14.0 36 44-79 21-57 (547)
173 TIGR03377 glycerol3P_GlpA glyc 98.0 5E-05 1.1E-09 81.3 12.9 74 208-292 122-199 (516)
174 PRK14694 putative mercuric red 98.0 3.8E-06 8.1E-11 88.8 4.0 35 44-78 4-39 (468)
175 TIGR02053 MerA mercuric reduct 98.0 3.1E-06 6.6E-11 89.4 3.2 32 47-78 1-33 (463)
176 PTZ00153 lipoamide dehydrogena 98.0 3.3E-06 7.2E-11 91.6 3.4 32 46-77 116-148 (659)
177 PRK11445 putative oxidoreducta 98.0 5.3E-05 1.1E-09 77.0 12.0 33 47-79 2-34 (351)
178 PRK13748 putative mercuric red 98.0 4E-06 8.6E-11 90.9 3.7 34 45-78 97-131 (561)
179 KOG2665 Predicted FAD-dependen 98.0 3.1E-05 6.7E-10 73.6 8.9 39 41-79 43-84 (453)
180 TIGR01816 sdhA_forward succina 98.0 0.00011 2.4E-09 79.3 14.3 57 217-283 125-182 (565)
181 COG0445 GidA Flavin-dependent 98.0 1.8E-05 3.9E-10 80.9 7.6 35 44-78 2-37 (621)
182 TIGR01423 trypano_reduc trypan 98.0 5E-06 1.1E-10 87.8 3.7 33 45-77 2-36 (486)
183 PRK06327 dihydrolipoamide dehy 98.0 5E-06 1.1E-10 88.0 3.7 34 44-77 2-36 (475)
184 PRK07236 hypothetical protein; 98.0 0.00014 3.1E-09 74.9 14.3 36 44-79 4-40 (386)
185 TIGR01350 lipoamide_DH dihydro 98.0 5E-06 1.1E-10 87.9 3.5 32 46-77 1-33 (461)
186 PLN00093 geranylgeranyl diphos 97.9 5.8E-06 1.3E-10 86.4 3.8 36 43-78 36-72 (450)
187 PRK06753 hypothetical protein; 97.9 6.8E-05 1.5E-09 76.9 11.5 33 48-80 2-35 (373)
188 PTZ00052 thioredoxin reductase 97.9 6.5E-06 1.4E-10 87.5 3.6 33 45-77 4-37 (499)
189 PRK06292 dihydrolipoamide dehy 97.9 7E-06 1.5E-10 86.7 3.6 34 45-78 2-36 (460)
190 KOG1399 Flavin-containing mono 97.9 6.9E-05 1.5E-09 77.3 10.5 34 46-79 6-40 (448)
191 PF00743 FMO-like: Flavin-bind 97.9 2.8E-05 6E-10 82.7 7.8 32 48-79 3-35 (531)
192 COG0562 Glf UDP-galactopyranos 97.9 1.2E-05 2.6E-10 76.8 4.0 38 47-84 2-40 (374)
193 KOG2852 Possible oxidoreductas 97.8 6.7E-05 1.4E-09 70.5 7.4 64 217-292 153-217 (380)
194 TIGR01372 soxA sarcosine oxida 97.8 0.00019 4.1E-09 82.5 12.7 35 45-79 162-197 (985)
195 PLN02676 polyamine oxidase 97.8 2.8E-05 6.1E-10 82.2 5.5 60 6-82 3-64 (487)
196 PRK05868 hypothetical protein; 97.8 0.00039 8.5E-09 71.2 13.7 32 48-79 3-35 (372)
197 PRK07494 2-octaprenyl-6-methox 97.8 2E-05 4.2E-10 81.3 4.0 36 44-79 5-41 (388)
198 PRK14727 putative mercuric red 97.8 1.7E-05 3.6E-10 84.1 3.6 35 45-79 15-50 (479)
199 PRK08020 ubiF 2-octaprenyl-3-m 97.8 1.8E-05 3.9E-10 81.7 3.6 36 44-79 3-39 (391)
200 PRK09897 hypothetical protein; 97.8 0.00021 4.5E-09 75.9 11.6 33 47-79 2-37 (534)
201 PRK07846 mycothione reductase; 97.8 2E-05 4.3E-10 82.8 4.0 32 46-78 1-32 (451)
202 TIGR01438 TGR thioredoxin and 97.7 1.8E-05 3.9E-10 83.7 3.3 33 46-78 2-35 (484)
203 TIGR02028 ChlP geranylgeranyl 97.7 2.1E-05 4.5E-10 81.3 3.7 32 47-78 1-33 (398)
204 PRK09126 hypothetical protein; 97.7 2E-05 4.2E-10 81.5 3.4 34 46-79 3-37 (392)
205 PRK08013 oxidoreductase; Provi 97.7 2.2E-05 4.8E-10 81.3 3.7 34 46-79 3-37 (400)
206 KOG0029 Amine oxidase [Seconda 97.7 2.6E-05 5.6E-10 81.9 3.7 39 44-82 13-52 (501)
207 TIGR00031 UDP-GALP_mutase UDP- 97.7 2.6E-05 5.7E-10 79.0 3.4 36 47-82 2-38 (377)
208 COG0492 TrxB Thioredoxin reduc 97.7 2.6E-05 5.6E-10 76.8 3.1 35 45-79 2-38 (305)
209 TIGR01316 gltA glutamate synth 97.7 0.0016 3.4E-08 68.5 16.5 37 44-80 131-168 (449)
210 PF04820 Trp_halogenase: Trypt 97.6 6.6E-05 1.4E-09 78.6 5.8 33 48-80 1-37 (454)
211 PRK08849 2-octaprenyl-3-methyl 97.6 3.2E-05 7E-10 79.6 3.3 33 46-78 3-36 (384)
212 PF13434 K_oxygenase: L-lysine 97.6 0.00022 4.8E-09 71.7 9.1 63 215-286 98-161 (341)
213 PLN02463 lycopene beta cyclase 97.6 3.8E-05 8.3E-10 80.0 3.5 36 44-79 26-62 (447)
214 PRK08850 2-octaprenyl-6-methox 97.6 4E-05 8.6E-10 79.6 3.4 33 45-77 3-36 (405)
215 COG2907 Predicted NAD/FAD-bind 97.6 0.00084 1.8E-08 65.0 11.7 40 46-85 8-47 (447)
216 PRK06912 acoL dihydrolipoamide 97.6 4.2E-05 9.1E-10 80.6 3.2 32 48-79 2-34 (458)
217 TIGR03862 flavo_PP4765 unchara 97.6 0.00059 1.3E-08 69.0 11.2 111 172-310 56-167 (376)
218 TIGR02352 thiamin_ThiO glycine 97.5 0.0002 4.3E-09 72.2 7.3 67 204-286 127-196 (337)
219 PRK12775 putative trifunctiona 97.5 0.0021 4.6E-08 73.8 16.2 36 45-80 429-465 (1006)
220 PLN02268 probable polyamine ox 97.5 6E-05 1.3E-09 79.0 3.4 35 48-82 2-37 (435)
221 PF06100 Strep_67kDa_ant: Stre 97.5 0.0018 3.9E-08 66.4 13.7 59 220-282 216-274 (500)
222 COG1231 Monoamine oxidase [Ami 97.5 7.7E-05 1.7E-09 75.1 3.8 38 44-81 5-43 (450)
223 PTZ00367 squalene epoxidase; P 97.5 6.9E-05 1.5E-09 80.3 3.4 34 45-78 32-66 (567)
224 PRK05329 anaerobic glycerol-3- 97.5 0.00016 3.6E-09 74.5 5.9 33 46-78 2-35 (422)
225 TIGR02360 pbenz_hydroxyl 4-hyd 97.5 6.9E-05 1.5E-09 77.3 3.2 34 46-79 2-36 (390)
226 PRK06617 2-octaprenyl-6-methox 97.5 7.3E-05 1.6E-09 76.7 3.2 33 47-79 2-35 (374)
227 PRK11883 protoporphyrinogen ox 97.4 7.6E-05 1.7E-09 78.6 3.1 35 48-82 2-39 (451)
228 TIGR03219 salicylate_mono sali 97.4 0.0011 2.4E-08 69.0 11.8 32 48-79 2-35 (414)
229 PRK07233 hypothetical protein; 97.4 9.8E-05 2.1E-09 77.3 3.2 35 48-82 1-36 (434)
230 PRK05732 2-octaprenyl-6-methox 97.4 0.00012 2.7E-09 75.5 3.5 34 45-78 2-39 (395)
231 PLN02576 protoporphyrinogen ox 97.4 0.00014 3E-09 77.6 4.0 38 45-82 11-50 (496)
232 TIGR01989 COQ6 Ubiquinone bios 97.4 0.00012 2.7E-09 76.6 3.4 32 47-78 1-37 (437)
233 PRK06996 hypothetical protein; 97.3 0.00016 3.5E-09 74.8 3.9 36 44-79 9-49 (398)
234 PLN02568 polyamine oxidase 97.3 0.00016 3.5E-09 77.2 3.8 39 44-82 3-47 (539)
235 PRK10262 thioredoxin reductase 97.3 0.00016 3.4E-09 72.6 3.5 36 43-78 3-39 (321)
236 KOG2311 NAD/FAD-utilizing prot 97.3 0.00058 1.2E-08 68.7 6.7 34 44-77 26-60 (679)
237 PF13454 NAD_binding_9: FAD-NA 97.2 0.006 1.3E-07 54.0 12.3 30 50-79 1-36 (156)
238 TIGR03197 MnmC_Cterm tRNA U-34 97.2 0.0018 4E-08 66.5 10.2 67 204-287 125-194 (381)
239 TIGR00562 proto_IX_ox protopor 97.2 0.00022 4.9E-09 75.3 3.4 36 47-82 3-43 (462)
240 PRK07538 hypothetical protein; 97.2 0.00021 4.6E-09 74.3 2.9 32 48-79 2-34 (413)
241 PF07992 Pyr_redox_2: Pyridine 97.2 0.00021 4.6E-09 66.1 2.6 32 48-79 1-33 (201)
242 TIGR01789 lycopene_cycl lycope 97.2 0.00023 5.1E-09 72.6 3.1 32 48-79 1-35 (370)
243 COG3349 Uncharacterized conser 97.2 0.00024 5.3E-09 72.9 3.1 37 48-84 2-39 (485)
244 PRK08294 phenol 2-monooxygenas 97.1 0.00032 6.8E-09 76.7 3.8 37 43-79 29-67 (634)
245 PRK13512 coenzyme A disulfide 97.1 0.0033 7.2E-08 65.9 11.0 32 48-79 3-37 (438)
246 PRK12416 protoporphyrinogen ox 97.1 0.00029 6.4E-09 74.5 3.1 35 48-82 3-44 (463)
247 PRK05335 tRNA (uracil-5-)-meth 97.1 0.00032 6.9E-09 71.5 2.9 34 47-80 3-37 (436)
248 TIGR02731 phytoene_desat phyto 97.1 0.00034 7.5E-09 73.7 3.2 35 48-82 1-36 (453)
249 PLN02927 antheraxanthin epoxid 97.1 0.00039 8.4E-09 75.3 3.5 35 44-78 79-114 (668)
250 TIGR03315 Se_ygfK putative sel 97.1 0.00041 8.9E-09 78.3 3.7 36 45-80 536-572 (1012)
251 COG3075 GlpB Anaerobic glycero 97.0 0.00045 9.7E-09 66.4 3.0 34 46-79 2-36 (421)
252 COG1148 HdrA Heterodisulfide r 97.0 0.0005 1.1E-08 69.4 3.1 34 46-79 124-158 (622)
253 PRK12831 putative oxidoreducta 97.0 0.00064 1.4E-08 71.6 3.9 36 44-79 138-174 (464)
254 COG1232 HemY Protoporphyrinoge 96.9 0.00058 1.3E-08 70.3 3.1 34 49-82 3-39 (444)
255 TIGR03378 glycerol3P_GlpB glyc 96.9 0.00058 1.2E-08 69.8 2.9 62 217-290 269-330 (419)
256 PLN02529 lysine-specific histo 96.9 0.0015 3.2E-08 71.8 5.8 39 44-82 158-197 (738)
257 PLN02612 phytoene desaturase 96.9 0.00092 2E-08 72.2 4.2 37 45-81 92-129 (567)
258 PRK06475 salicylate hydroxylas 96.8 0.00076 1.6E-08 69.9 3.1 32 48-79 4-36 (400)
259 PLN02328 lysine-specific histo 96.8 0.00094 2E-08 73.8 3.8 38 44-81 236-274 (808)
260 TIGR00137 gid_trmFO tRNA:m(5)U 96.8 0.0009 1.9E-08 68.7 3.0 33 47-79 1-34 (433)
261 TIGR02732 zeta_caro_desat caro 96.7 0.0011 2.4E-08 70.1 3.2 35 48-82 1-36 (474)
262 PLN02487 zeta-carotene desatur 96.7 0.0018 3.8E-08 69.5 4.6 37 45-81 74-111 (569)
263 PRK12779 putative bifunctional 96.6 0.0012 2.6E-08 75.1 3.2 36 45-80 305-341 (944)
264 KOG2614 Kynurenine 3-monooxyge 96.6 0.0014 3E-08 65.4 3.1 34 46-79 2-36 (420)
265 PRK12810 gltD glutamate syntha 96.6 0.0016 3.5E-08 68.9 3.8 37 44-80 141-178 (471)
266 PF00996 GDI: GDP dissociation 96.6 0.0011 2.4E-08 68.2 2.4 43 43-85 1-44 (438)
267 PF00070 Pyr_redox: Pyridine n 96.6 0.0018 3.9E-08 50.2 3.0 33 49-81 2-35 (80)
268 PRK12769 putative oxidoreducta 96.6 0.0017 3.7E-08 71.6 3.6 35 45-79 326-361 (654)
269 PRK09853 putative selenate red 96.5 0.002 4.3E-08 72.6 3.6 36 45-80 538-574 (1019)
270 PRK04965 NADH:flavorubredoxin 96.4 0.028 6E-07 57.7 11.5 33 47-79 142-175 (377)
271 TIGR01350 lipoamide_DH dihydro 96.4 0.018 3.9E-07 60.8 10.2 33 47-79 171-204 (461)
272 PRK11749 dihydropyrimidine deh 96.4 0.0026 5.7E-08 67.0 3.5 37 44-80 138-175 (457)
273 PRK12778 putative bifunctional 96.3 0.0032 6.9E-08 70.7 4.1 36 44-79 429-465 (752)
274 KOG0685 Flavin-containing amin 96.2 0.0039 8.5E-08 63.2 3.7 37 45-81 20-58 (498)
275 PRK12814 putative NADPH-depend 96.2 0.0039 8.6E-08 68.6 4.0 36 45-80 192-228 (652)
276 KOG3855 Monooxygenase involved 96.2 0.0043 9.3E-08 61.7 3.8 37 43-79 33-74 (481)
277 PLN03000 amine oxidase 96.2 0.0036 7.7E-08 69.4 3.6 38 45-82 183-221 (881)
278 PRK09754 phenylpropionate diox 96.2 0.039 8.5E-07 57.0 11.0 33 47-79 145-178 (396)
279 COG3634 AhpF Alkyl hydroperoxi 96.2 0.0024 5.1E-08 61.9 1.7 60 221-290 400-460 (520)
280 PLN02976 amine oxidase 96.2 0.0039 8.3E-08 71.8 3.6 38 44-81 691-729 (1713)
281 KOG1276 Protoporphyrinogen oxi 96.2 0.0052 1.1E-07 61.4 4.1 38 44-81 9-49 (491)
282 PLN02852 ferredoxin-NADP+ redu 96.2 0.0052 1.1E-07 64.6 4.4 37 45-81 25-64 (491)
283 PRK07818 dihydrolipoamide dehy 96.2 0.057 1.2E-06 57.1 12.3 60 222-292 224-285 (466)
284 PRK12770 putative glutamate sy 96.1 0.006 1.3E-07 62.0 4.2 36 45-80 17-53 (352)
285 PRK06327 dihydrolipoamide dehy 95.9 0.045 9.6E-07 58.1 10.2 53 223-286 236-288 (475)
286 PRK06567 putative bifunctional 95.9 0.0059 1.3E-07 68.3 3.4 34 45-78 382-416 (1028)
287 TIGR01318 gltD_gamma_fam gluta 95.9 0.0061 1.3E-07 64.3 3.4 36 45-80 140-176 (467)
288 PRK08255 salicylyl-CoA 5-hydro 95.9 0.0051 1.1E-07 69.0 3.0 33 48-80 2-37 (765)
289 PRK05976 dihydrolipoamide dehy 95.8 0.045 9.9E-07 58.0 9.8 33 47-79 181-214 (472)
290 TIGR02374 nitri_red_nirB nitri 95.7 0.039 8.5E-07 62.1 9.2 31 49-79 1-35 (785)
291 PRK14989 nitrite reductase sub 95.7 0.066 1.4E-06 60.6 10.8 57 223-292 199-255 (847)
292 TIGR01317 GOGAT_sm_gam glutama 95.6 0.0087 1.9E-07 63.5 3.5 35 45-79 142-177 (485)
293 PRK12809 putative oxidoreducta 95.6 0.0096 2.1E-07 65.5 3.6 37 45-81 309-346 (639)
294 COG4529 Uncharacterized protei 95.6 0.12 2.6E-06 53.0 11.2 33 47-79 2-38 (474)
295 PRK09564 coenzyme A disulfide 95.6 0.071 1.5E-06 56.0 10.0 33 47-79 150-183 (444)
296 PRK06416 dihydrolipoamide dehy 95.5 0.13 2.7E-06 54.5 11.7 32 48-79 174-206 (462)
297 PRK06370 mercuric reductase; V 95.5 0.094 2E-06 55.4 10.6 32 48-79 173-205 (463)
298 PRK05249 soluble pyridine nucl 95.4 0.097 2.1E-06 55.3 10.5 32 48-79 177-209 (461)
299 TIGR03140 AhpF alkyl hydropero 95.4 0.18 3.9E-06 54.1 12.4 55 224-288 401-456 (515)
300 TIGR02053 MerA mercuric reduct 95.4 0.13 2.8E-06 54.3 11.3 33 47-79 167-200 (463)
301 PTZ00188 adrenodoxin reductase 95.4 0.016 3.4E-07 60.4 4.1 36 46-81 39-76 (506)
302 PRK15317 alkyl hydroperoxide r 95.3 0.18 3.9E-06 54.1 12.3 56 224-289 400-456 (517)
303 COG1249 Lpd Pyruvate/2-oxoglut 95.3 0.11 2.3E-06 54.3 9.9 32 48-79 175-207 (454)
304 TIGR01421 gluta_reduc_1 glutat 95.3 0.083 1.8E-06 55.6 9.4 32 48-79 168-200 (450)
305 PRK06912 acoL dihydrolipoamide 95.3 0.092 2E-06 55.4 9.7 32 48-79 172-204 (458)
306 PRK06467 dihydrolipoamide dehy 95.2 0.1 2.2E-06 55.3 9.9 32 48-79 176-208 (471)
307 PRK10262 thioredoxin reductase 95.2 0.28 6.1E-06 49.0 12.5 60 222-292 196-257 (321)
308 TIGR02374 nitri_red_nirB nitri 95.2 0.1 2.2E-06 58.9 10.1 55 223-292 194-248 (785)
309 PRK12771 putative glutamate sy 95.1 0.015 3.3E-07 63.0 3.2 36 45-80 136-172 (564)
310 PRK07845 flavoprotein disulfid 95.0 0.24 5.3E-06 52.3 12.0 55 223-292 230-286 (466)
311 PLN02507 glutathione reductase 95.0 0.14 3.1E-06 54.6 10.3 49 223-286 256-304 (499)
312 PRK06116 glutathione reductase 95.0 0.14 3.1E-06 53.8 10.2 50 222-285 219-268 (450)
313 PRK14727 putative mercuric red 95.0 0.18 3.9E-06 53.5 10.9 50 222-287 239-288 (479)
314 PRK13984 putative oxidoreducta 95.0 0.02 4.3E-07 62.7 3.6 37 44-80 281-318 (604)
315 PRK08010 pyridine nucleotide-d 94.9 0.13 2.8E-06 54.0 9.3 51 221-287 209-259 (441)
316 PTZ00318 NADH dehydrogenase-li 94.8 0.029 6.4E-07 58.5 4.3 38 44-81 8-46 (424)
317 COG1252 Ndh NADH dehydrogenase 94.8 0.095 2.1E-06 53.4 7.8 48 222-287 220-267 (405)
318 PRK09564 coenzyme A disulfide 94.8 0.021 4.6E-07 60.0 3.2 58 219-292 199-256 (444)
319 TIGR03385 CoA_CoA_reduc CoA-di 94.8 0.23 4.9E-06 51.9 10.9 33 47-79 138-171 (427)
320 PRK09754 phenylpropionate diox 94.7 0.024 5.3E-07 58.6 3.5 59 218-292 193-251 (396)
321 PRK12831 putative oxidoreducta 94.7 0.16 3.4E-06 53.7 9.5 31 48-78 283-314 (464)
322 PRK06115 dihydrolipoamide dehy 94.7 0.2 4.3E-06 53.0 10.3 53 223-286 227-280 (466)
323 KOG1439 RAB proteins geranylge 94.7 0.031 6.8E-07 55.5 3.7 46 43-88 1-47 (440)
324 TIGR01424 gluta_reduc_2 glutat 94.6 0.18 3.8E-06 53.1 9.5 49 223-286 219-267 (446)
325 PRK13748 putative mercuric red 94.4 0.27 5.9E-06 53.3 10.8 30 48-77 272-302 (561)
326 KOG3851 Sulfide:quinone oxidor 94.3 0.038 8.2E-07 53.2 3.3 42 44-85 37-81 (446)
327 TIGR01292 TRX_reduct thioredox 94.3 0.48 1E-05 46.5 11.5 32 47-78 142-174 (300)
328 PTZ00058 glutathione reductase 94.2 0.28 6.1E-06 52.9 10.1 33 47-79 238-271 (561)
329 PRK14694 putative mercuric red 93.9 0.37 8.1E-06 51.0 10.4 50 222-287 229-278 (468)
330 COG0493 GltD NADPH-dependent g 93.9 0.053 1.1E-06 56.6 3.8 35 46-80 123-158 (457)
331 TIGR03378 glycerol3P_GlpB glyc 93.9 0.2 4.3E-06 51.5 7.7 32 47-78 1-33 (419)
332 COG1206 Gid NAD(FAD)-utilizing 93.8 0.073 1.6E-06 51.6 4.1 34 47-80 4-38 (439)
333 KOG2403 Succinate dehydrogenas 93.6 0.11 2.3E-06 53.9 5.2 48 486-533 417-469 (642)
334 COG3486 IucD Lysine/ornithine 93.6 0.8 1.7E-05 46.1 11.0 38 43-80 2-41 (436)
335 PF13434 K_oxygenase: L-lysine 93.5 0.19 4.1E-06 50.6 6.8 36 44-79 188-226 (341)
336 KOG1800 Ferredoxin/adrenodoxin 93.4 0.077 1.7E-06 52.5 3.7 35 47-81 21-58 (468)
337 KOG0399 Glutamate synthase [Am 93.4 0.089 1.9E-06 58.7 4.4 36 45-80 1784-1820(2142)
338 TIGR03169 Nterm_to_SelD pyridi 93.3 0.083 1.8E-06 53.9 4.1 34 48-81 1-38 (364)
339 KOG4405 GDP dissociation inhib 93.3 0.092 2E-06 52.3 3.9 40 44-83 6-46 (547)
340 COG5044 MRS6 RAB proteins gera 93.2 0.12 2.6E-06 50.9 4.6 43 45-87 5-48 (434)
341 TIGR01423 trypano_reduc trypan 93.1 0.52 1.1E-05 50.0 9.8 52 222-287 242-293 (486)
342 TIGR01438 TGR thioredoxin and 92.9 0.46 9.9E-06 50.5 9.0 52 223-287 232-284 (484)
343 PRK04965 NADH:flavorubredoxin 92.8 0.086 1.9E-06 54.1 3.4 61 218-293 190-250 (377)
344 KOG2755 Oxidoreductase [Genera 92.8 0.045 9.7E-07 51.3 1.0 34 49-82 2-38 (334)
345 COG1252 Ndh NADH dehydrogenase 92.5 0.11 2.5E-06 52.9 3.5 35 48-82 5-42 (405)
346 PRK11749 dihydropyrimidine deh 92.4 0.78 1.7E-05 48.4 9.9 32 47-78 274-307 (457)
347 COG3634 AhpF Alkyl hydroperoxi 92.3 1.4 3E-05 43.4 10.3 34 46-79 354-388 (520)
348 KOG0404 Thioredoxin reductase 91.7 0.13 2.8E-06 47.2 2.5 35 45-79 7-42 (322)
349 COG0446 HcaD Uncharacterized N 91.1 0.16 3.4E-06 52.5 2.9 36 46-81 136-172 (415)
350 TIGR01372 soxA sarcosine oxida 90.5 1.9 4.2E-05 50.0 11.3 59 223-292 363-421 (985)
351 PF02558 ApbA: Ketopantoate re 90.3 0.19 4.1E-06 44.0 2.4 30 49-78 1-31 (151)
352 COG0569 TrkA K+ transport syst 90.0 0.25 5.3E-06 46.6 2.9 32 48-79 2-34 (225)
353 KOG1336 Monodehydroascorbate/f 89.7 1.7 3.6E-05 44.7 8.6 55 222-289 266-320 (478)
354 PRK05329 anaerobic glycerol-3- 88.8 1 2.2E-05 46.7 6.6 58 217-286 265-322 (422)
355 PF02737 3HCDH_N: 3-hydroxyacy 88.7 0.26 5.6E-06 44.7 2.0 30 49-78 2-32 (180)
356 PRK07251 pyridine nucleotide-d 88.5 0.35 7.6E-06 50.7 3.1 33 48-80 159-192 (438)
357 PF01210 NAD_Gly3P_dh_N: NAD-d 88.4 0.27 5.9E-06 43.5 1.9 30 49-78 2-32 (157)
358 PF13738 Pyr_redox_3: Pyridine 88.3 0.41 8.8E-06 44.1 3.1 34 46-79 167-201 (203)
359 PRK07846 mycothione reductase; 88.0 0.39 8.5E-06 50.5 3.1 34 47-80 167-201 (451)
360 PRK05708 2-dehydropantoate 2-r 87.2 0.45 9.7E-06 47.2 2.8 31 48-78 4-35 (305)
361 PF01593 Amino_oxidase: Flavin 86.7 0.36 7.8E-06 49.9 1.9 29 56-84 1-30 (450)
362 PRK13512 coenzyme A disulfide 86.0 0.57 1.2E-05 49.1 3.0 32 48-79 150-182 (438)
363 PRK14989 nitrite reductase sub 86.0 0.81 1.8E-05 51.9 4.3 34 48-81 5-43 (847)
364 TIGR03452 mycothione_red mycot 85.3 0.67 1.4E-05 48.8 3.1 33 47-79 170-203 (452)
365 PRK06292 dihydrolipoamide dehy 85.1 0.68 1.5E-05 48.9 3.0 34 47-80 170-204 (460)
366 PRK06129 3-hydroxyacyl-CoA deh 85.0 0.6 1.3E-05 46.4 2.4 31 48-78 4-35 (308)
367 TIGR02731 phytoene_desat phyto 84.9 1.6 3.5E-05 45.9 5.8 55 217-280 219-274 (453)
368 PRK06249 2-dehydropantoate 2-r 84.5 0.79 1.7E-05 45.6 3.0 31 48-78 7-38 (313)
369 PTZ00153 lipoamide dehydrogena 84.3 0.81 1.7E-05 50.3 3.2 33 48-80 314-347 (659)
370 PF03721 UDPG_MGDP_dh_N: UDP-g 84.3 0.85 1.9E-05 41.5 2.9 31 49-79 3-34 (185)
371 PRK01438 murD UDP-N-acetylmura 84.3 0.77 1.7E-05 48.7 3.0 31 48-78 18-49 (480)
372 KOG1335 Dihydrolipoamide dehyd 83.9 5.2 0.00011 40.1 8.1 56 223-293 264-320 (506)
373 TIGR03143 AhpF_homolog putativ 83.6 0.89 1.9E-05 49.2 3.2 33 47-79 144-177 (555)
374 PRK12921 2-dehydropantoate 2-r 83.3 0.87 1.9E-05 45.0 2.7 28 49-76 3-31 (305)
375 PRK06522 2-dehydropantoate 2-r 83.1 0.94 2E-05 44.7 2.9 29 49-77 3-32 (304)
376 PF02254 TrkA_N: TrkA-N domain 82.9 0.96 2.1E-05 37.4 2.5 31 49-79 1-32 (116)
377 PF13241 NAD_binding_7: Putati 82.8 0.82 1.8E-05 37.1 1.9 32 46-77 7-39 (103)
378 PRK02705 murD UDP-N-acetylmura 82.7 0.93 2E-05 47.8 2.9 31 49-79 3-34 (459)
379 PLN02546 glutathione reductase 82.0 1.1 2.4E-05 48.4 3.0 33 48-80 254-287 (558)
380 PRK07066 3-hydroxybutyryl-CoA 81.9 1.1 2.4E-05 44.6 2.9 31 48-78 9-40 (321)
381 PRK08293 3-hydroxybutyryl-CoA 81.9 1.1 2.4E-05 44.0 2.8 31 48-78 5-36 (287)
382 PRK04148 hypothetical protein; 81.9 1.2 2.5E-05 38.0 2.6 32 47-79 18-50 (134)
383 KOG1346 Programmed cell death 81.8 11 0.00023 38.3 9.5 52 218-288 264-315 (659)
384 PRK06718 precorrin-2 dehydroge 81.7 1.2 2.5E-05 41.3 2.7 30 47-76 11-41 (202)
385 PRK07819 3-hydroxybutyryl-CoA 81.6 1.1 2.4E-05 44.0 2.7 32 48-79 7-39 (286)
386 PRK09260 3-hydroxybutyryl-CoA 81.5 0.99 2.2E-05 44.3 2.4 31 49-79 4-35 (288)
387 PRK06719 precorrin-2 dehydroge 81.4 1.3 2.8E-05 39.1 2.8 29 47-75 14-43 (157)
388 PRK14106 murD UDP-N-acetylmura 80.5 1.3 2.8E-05 46.6 3.0 32 47-78 6-38 (450)
389 PF00899 ThiF: ThiF family; I 80.1 1.4 3E-05 37.7 2.5 33 47-79 3-37 (135)
390 TIGR02732 zeta_caro_desat caro 79.3 3.6 7.8E-05 43.6 5.9 65 217-287 225-289 (474)
391 KOG3923 D-aspartate oxidase [A 79.1 1.7 3.6E-05 41.9 2.9 33 46-78 3-43 (342)
392 PRK12770 putative glutamate sy 79.0 1.5 3.3E-05 44.4 2.8 32 48-79 174-207 (352)
393 COG1004 Ugd Predicted UDP-gluc 78.9 1.7 3.6E-05 43.8 2.9 31 49-79 3-34 (414)
394 TIGR01316 gltA glutamate synth 78.9 1.6 3.5E-05 45.8 3.1 32 48-79 274-306 (449)
395 TIGR01470 cysG_Nterm siroheme 78.8 1.6 3.5E-05 40.4 2.7 29 48-76 11-40 (205)
396 PRK15116 sulfur acceptor prote 78.8 1.8 3.8E-05 41.8 3.0 34 46-79 30-65 (268)
397 COG1748 LYS9 Saccharopine dehy 78.7 1.8 3.9E-05 44.0 3.2 32 48-79 3-36 (389)
398 PF01488 Shikimate_DH: Shikima 78.6 1.5 3.3E-05 37.5 2.3 33 46-78 12-46 (135)
399 PRK08229 2-dehydropantoate 2-r 78.4 1.6 3.6E-05 43.9 2.9 31 48-78 4-35 (341)
400 TIGR02354 thiF_fam2 thiamine b 78.2 1.9 4.2E-05 39.7 3.0 34 46-79 21-56 (200)
401 PRK06035 3-hydroxyacyl-CoA deh 78.1 1.7 3.7E-05 42.7 2.8 30 49-78 6-36 (291)
402 PTZ00052 thioredoxin reductase 77.9 1.6 3.5E-05 46.5 2.8 30 48-77 184-214 (499)
403 PRK07530 3-hydroxybutyryl-CoA 77.0 2.2 4.8E-05 41.9 3.3 31 48-78 6-37 (292)
404 TIGR00518 alaDH alanine dehydr 77.0 1.9 4.1E-05 44.0 2.8 33 46-78 167-200 (370)
405 PLN02487 zeta-carotene desatur 76.9 4.4 9.5E-05 43.8 5.7 63 218-286 302-364 (569)
406 cd01075 NAD_bind_Leu_Phe_Val_D 76.8 2 4.3E-05 39.6 2.7 31 48-78 30-61 (200)
407 PRK14620 NAD(P)H-dependent gly 76.6 2 4.2E-05 43.1 2.8 30 49-78 3-33 (326)
408 cd01080 NAD_bind_m-THF_DH_Cycl 76.5 2.9 6.3E-05 37.3 3.5 33 45-77 43-77 (168)
409 COG0686 Ald Alanine dehydrogen 76.3 3.3 7.2E-05 40.3 4.0 36 44-79 166-202 (371)
410 cd01483 E1_enzyme_family Super 76.1 2.2 4.7E-05 36.9 2.6 31 49-79 2-34 (143)
411 PRK14618 NAD(P)H-dependent gly 76.0 2.5 5.5E-05 42.3 3.4 31 48-78 6-37 (328)
412 PLN02172 flavin-containing mon 75.7 2.5 5.5E-05 44.5 3.4 31 48-78 206-237 (461)
413 KOG2304 3-hydroxyacyl-CoA dehy 75.7 2.7 5.9E-05 38.8 3.1 36 44-79 9-45 (298)
414 COG1893 ApbA Ketopantoate redu 75.5 2.1 4.6E-05 42.4 2.6 31 49-79 3-34 (307)
415 cd01487 E1_ThiF_like E1_ThiF_l 75.1 2.5 5.5E-05 38.0 2.8 31 49-79 2-34 (174)
416 PRK12475 thiamine/molybdopteri 74.5 2.6 5.5E-05 42.4 3.0 34 46-79 24-59 (338)
417 COG1250 FadB 3-hydroxyacyl-CoA 74.5 2.8 6.1E-05 41.2 3.1 30 49-78 6-36 (307)
418 PRK05808 3-hydroxybutyryl-CoA 74.4 2.3 4.9E-05 41.6 2.6 31 48-78 5-36 (282)
419 PRK07688 thiamine/molybdopteri 73.8 2.8 6.1E-05 42.1 3.1 34 46-79 24-59 (339)
420 PF01262 AlaDh_PNT_C: Alanine 73.8 2.5 5.5E-05 37.7 2.5 33 46-78 20-53 (168)
421 cd00401 AdoHcyase S-adenosyl-L 73.4 2.8 6E-05 43.2 2.9 33 47-79 203-236 (413)
422 PRK06130 3-hydroxybutyryl-CoA 73.3 3.2 6.9E-05 41.2 3.3 31 48-78 6-37 (311)
423 COG4716 Myosin-crossreactive a 73.3 3.1 6.7E-05 41.4 3.0 38 44-81 20-62 (587)
424 TIGR01763 MalateDH_bact malate 73.0 2.9 6.3E-05 41.4 2.9 29 49-77 4-34 (305)
425 TIGR02355 moeB molybdopterin s 72.9 3 6.5E-05 39.7 2.9 34 46-79 24-59 (240)
426 PRK00094 gpsA NAD(P)H-dependen 72.6 2.7 5.8E-05 41.9 2.6 31 48-78 3-34 (325)
427 PTZ00318 NADH dehydrogenase-li 72.1 3 6.6E-05 43.5 2.9 33 48-80 175-222 (424)
428 TIGR02279 PaaC-3OHAcCoADH 3-hy 72.0 2.9 6.3E-05 44.5 2.8 32 48-79 7-39 (503)
429 COG2072 TrkA Predicted flavopr 72.0 3.8 8.3E-05 42.9 3.7 34 47-80 176-210 (443)
430 PRK05690 molybdopterin biosynt 71.7 3.3 7.1E-05 39.6 2.8 35 45-79 31-67 (245)
431 TIGR03736 PRTRC_ThiF PRTRC sys 71.5 3.6 7.7E-05 39.1 3.0 35 44-78 9-55 (244)
432 PRK08328 hypothetical protein; 71.4 3.4 7.3E-05 39.1 2.8 34 46-79 27-62 (231)
433 cd05311 NAD_bind_2_malic_enz N 71.1 2.9 6.4E-05 39.4 2.3 32 48-79 27-62 (226)
434 cd01486 Apg7 Apg7 is an E1-lik 71.0 3.8 8.2E-05 40.1 3.1 33 49-81 2-36 (307)
435 PRK08644 thiamine biosynthesis 71.0 3.6 7.9E-05 38.3 2.9 34 46-79 28-63 (212)
436 TIGR03026 NDP-sugDHase nucleot 71.0 3.8 8.2E-05 42.5 3.3 31 49-79 3-34 (411)
437 cd00757 ThiF_MoeB_HesA_family 71.0 3.2 7E-05 39.1 2.6 34 46-79 21-56 (228)
438 TIGR02356 adenyl_thiF thiazole 70.5 3.8 8.3E-05 37.8 2.9 34 46-79 21-56 (202)
439 PRK12549 shikimate 5-dehydroge 70.5 3.5 7.5E-05 40.4 2.8 32 47-78 128-161 (284)
440 TIGR01381 E1_like_apg7 E1-like 70.4 3.6 7.7E-05 44.5 3.0 36 46-81 338-375 (664)
441 PRK11730 fadB multifunctional 70.3 3.5 7.7E-05 46.0 3.1 32 48-79 315-347 (715)
442 PRK14619 NAD(P)H-dependent gly 70.2 4.2 9.1E-05 40.3 3.4 31 48-78 6-37 (308)
443 TIGR01915 npdG NADPH-dependent 70.0 3.9 8.4E-05 38.3 2.9 30 49-78 3-34 (219)
444 PF13478 XdhC_C: XdhC Rossmann 70.0 3.9 8.5E-05 35.1 2.7 31 49-79 1-32 (136)
445 cd01484 E1-2_like Ubiquitin ac 69.6 3.7 8E-05 38.8 2.6 31 49-79 2-34 (234)
446 PLN02545 3-hydroxybutyryl-CoA 69.4 4.6 0.0001 39.7 3.4 30 49-78 7-37 (295)
447 PRK11064 wecC UDP-N-acetyl-D-m 69.3 3.9 8.4E-05 42.5 3.0 32 48-79 5-37 (415)
448 TIGR02853 spore_dpaA dipicolin 69.1 3.7 8.1E-05 40.2 2.7 32 47-78 152-184 (287)
449 TIGR02437 FadB fatty oxidation 68.7 4 8.6E-05 45.6 3.1 32 48-79 315-347 (714)
450 cd01485 E1-1_like Ubiquitin ac 68.7 4.3 9.4E-05 37.3 2.9 34 46-79 19-54 (198)
451 TIGR00936 ahcY adenosylhomocys 68.6 4.3 9.4E-05 41.7 3.1 33 47-79 196-229 (406)
452 PRK12548 shikimate 5-dehydroge 68.5 3.9 8.4E-05 40.2 2.6 32 47-78 127-160 (289)
453 cd05292 LDH_2 A subgroup of L- 68.2 4.6 9.9E-05 40.1 3.1 31 48-78 2-35 (308)
454 PRK07233 hypothetical protein; 68.0 7 0.00015 40.6 4.6 65 207-286 194-258 (434)
455 cd01492 Aos1_SUMO Ubiquitin ac 67.7 4.6 0.0001 37.1 2.8 34 46-79 21-56 (197)
456 PRK08268 3-hydroxy-acyl-CoA de 67.6 4.2 9.2E-05 43.4 2.9 31 49-79 10-41 (507)
457 PRK02472 murD UDP-N-acetylmura 67.5 3.9 8.5E-05 42.9 2.7 30 49-78 8-38 (447)
458 KOG2018 Predicted dinucleotide 66.3 5.1 0.00011 38.8 2.8 31 48-78 76-108 (430)
459 PRK08223 hypothetical protein; 66.1 5.2 0.00011 38.9 2.9 34 46-79 27-62 (287)
460 PLN02612 phytoene desaturase 66.0 9.7 0.00021 41.4 5.3 47 221-280 318-364 (567)
461 cd01488 Uba3_RUB Ubiquitin act 66.0 4.8 0.0001 39.4 2.7 31 49-79 2-34 (291)
462 PRK07531 bifunctional 3-hydrox 65.9 4.7 0.0001 42.9 2.9 31 48-78 6-37 (495)
463 cd01489 Uba2_SUMO Ubiquitin ac 65.8 4.5 9.8E-05 40.0 2.5 31 49-79 2-34 (312)
464 PRK05476 S-adenosyl-L-homocyst 65.7 5.1 0.00011 41.5 2.9 33 47-79 213-246 (425)
465 PRK09496 trkA potassium transp 65.1 5 0.00011 42.1 2.9 32 48-79 2-34 (453)
466 PTZ00082 L-lactate dehydrogena 65.1 7.4 0.00016 38.8 3.9 35 45-79 5-41 (321)
467 PRK07417 arogenate dehydrogena 65.0 4.8 0.0001 39.2 2.6 30 49-78 3-33 (279)
468 PRK06153 hypothetical protein; 64.7 6.2 0.00013 40.0 3.2 34 46-79 176-211 (393)
469 cd05291 HicDH_like L-2-hydroxy 64.7 5.7 0.00012 39.4 3.0 31 49-79 3-36 (306)
470 PLN02494 adenosylhomocysteinas 64.4 5.8 0.00013 41.4 3.0 33 47-79 255-288 (477)
471 TIGR02441 fa_ox_alpha_mit fatt 64.2 5.2 0.00011 44.8 2.9 32 48-79 337-369 (737)
472 PLN02520 bifunctional 3-dehydr 63.7 5.4 0.00012 42.8 2.8 30 48-77 381-411 (529)
473 PF00670 AdoHcyase_NAD: S-aden 63.6 4.5 9.7E-05 35.7 1.8 32 48-79 25-57 (162)
474 PRK10669 putative cation:proto 63.3 5.6 0.00012 43.1 2.9 34 46-79 417-451 (558)
475 cd00755 YgdL_like Family of ac 63.1 6.3 0.00014 37.2 2.8 34 46-79 11-46 (231)
476 PF03807 F420_oxidored: NADP o 62.9 5.2 0.00011 31.6 1.9 31 49-79 2-37 (96)
477 cd05191 NAD_bind_amino_acid_DH 62.8 7.2 0.00016 30.3 2.7 30 47-76 24-55 (86)
478 cd01339 LDH-like_MDH L-lactate 62.5 5.6 0.00012 39.3 2.5 30 49-78 1-32 (300)
479 PRK12778 putative bifunctional 62.4 5.6 0.00012 44.9 2.8 32 48-79 572-605 (752)
480 PRK08306 dipicolinate synthase 62.3 6.4 0.00014 38.8 2.8 33 46-78 152-185 (296)
481 PRK12810 gltD glutamate syntha 62.3 18 0.00039 38.2 6.5 62 220-291 338-410 (471)
482 PRK06223 malate dehydrogenase; 62.1 6.8 0.00015 38.8 3.0 31 48-78 4-36 (307)
483 TIGR00507 aroE shikimate 5-deh 61.9 6.7 0.00015 38.0 2.9 32 47-78 118-150 (270)
484 PRK11154 fadJ multifunctional 61.6 6.6 0.00014 43.9 3.1 31 48-78 311-343 (708)
485 PRK09424 pntA NAD(P) transhydr 61.3 6.4 0.00014 41.8 2.7 34 46-79 165-199 (509)
486 PLN02353 probable UDP-glucose 61.2 6.9 0.00015 41.3 3.0 31 49-79 4-37 (473)
487 cd01490 Ube1_repeat2 Ubiquitin 61.2 6.3 0.00014 40.8 2.6 31 49-79 2-39 (435)
488 PRK05562 precorrin-2 dehydroge 61.1 7.2 0.00016 36.5 2.8 29 46-74 25-54 (223)
489 cd01078 NAD_bind_H4MPT_DH NADP 61.1 7.6 0.00016 35.5 2.9 31 47-77 29-61 (194)
490 PF10518 TAT_signal: TAT (twin 61.0 7.2 0.00016 22.8 1.7 20 1-20 2-21 (26)
491 PRK08017 oxidoreductase; Provi 60.9 7.7 0.00017 36.9 3.1 30 49-78 5-36 (256)
492 PRK15057 UDP-glucose 6-dehydro 60.8 7.4 0.00016 40.0 3.1 31 49-79 3-33 (388)
493 PTZ00075 Adenosylhomocysteinas 60.1 7.5 0.00016 40.7 3.0 33 47-79 255-288 (476)
494 PRK08762 molybdopterin biosynt 60.1 7.3 0.00016 39.8 2.9 34 46-79 135-170 (376)
495 TIGR01505 tartro_sem_red 2-hyd 59.8 6.1 0.00013 38.7 2.2 30 49-78 2-32 (291)
496 PRK14027 quinate/shikimate deh 59.7 7.6 0.00016 38.0 2.8 32 47-78 128-161 (283)
497 TIGR01809 Shik-DH-AROM shikima 59.5 7.7 0.00017 37.9 2.8 32 47-78 126-159 (282)
498 PRK07878 molybdopterin biosynt 59.4 7.4 0.00016 40.1 2.8 34 46-79 42-77 (392)
499 PRK00258 aroE shikimate 5-dehy 59.2 7.4 0.00016 38.0 2.7 32 47-78 124-157 (278)
500 PRK12839 hypothetical protein; 59.1 14 0.00031 40.1 5.0 36 44-79 6-42 (572)
No 1
>PLN02785 Protein HOTHEAD
Probab=100.00 E-value=2e-81 Score=665.47 Aligned_cols=510 Identities=61% Similarity=1.048 Sum_probs=400.4
Q ss_pred ccCCCcccccccccCCC----------CCCccEEEECCCCchHHHhhhhcCCCeEEEEeccCCCCCCCCcccchhhhhhh
Q 009272 27 QKAPNYSFMRNATAAKP----------VSYYDYIVIGGGTAGCPLAASLSQNASVLLLERGDSPYGNPNITNSGSFSAEL 96 (538)
Q Consensus 27 ~~~~~~~~~~~~~~~~~----------~~~~DvIIVGsG~aG~~~A~~La~g~~VlvlE~G~~~~~~~~~~~~~~~~~~~ 96 (538)
.....+.|+.++.+.+. +..|||||||+|.+||++|.+|+++.+|||||+|+.....+.+.....+....
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IIVG~G~aG~~lA~~Ls~~~~VLllE~G~~~~~~~~~~~~~~~~~~~ 105 (587)
T PLN02785 26 FTPYRYPFIDKASSFSSSSSSSSSSGGDSAYDYIVVGGGTAGCPLAATLSQNFSVLLLERGGVPFGNANVSFLENFHIGL 105 (587)
T ss_pred CCccCCchhhccccccccccccccccccccCCEEEECcCHHHHHHHHHHhcCCcEEEEecCCCCCCCchhhhHHhhCCcc
Confidence 34455688999887776 56899999999999999999999988999999998643334443333343344
Q ss_pred cCCCCCCCCccccCCCceeecCcccccchhhhcccccccCChhhhhcCCCChhhhhhhhhhhccccccCCCCchhHHHHH
Q 009272 97 ADLSPTSPSQRFISEDGVVSTRARVLGGGTCINAGFYTRAEPYYAREAGWDGRLVNESYQWVEKKVVFRPPMQRWQSALR 176 (538)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~g~~lGG~s~~n~~~~~r~~~~~~~~~gw~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~ 176 (538)
.+|.+.+.+|.+..++.+.+.+||+|||+|++|++.|.|+++++++..||+++.+.++|++.|+.+...+...++...+.
T Consensus 106 ~d~~~~~~~q~~~~~~~~~~~rGr~LGGsS~iN~~~y~Rg~~~d~~~~GW~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~ 185 (587)
T PLN02785 106 ADTSPTSASQAFISTDGVINARARVLGGGTCINAGFYSRASTRFIQKAGWDAKLVNESYPWVERQIVHWPKVAPWQAALR 185 (587)
T ss_pred cccCCccccccccCCCceeccccceecchhhhcCeEEEeCCHHHhccCCCCcccccchHHHHhcccccCCCcChHHHHHH
Confidence 57888888888888889999999999999999999999999988888899999999999999987655666778899999
Q ss_pred HHHHHcCCCCCCCCccCCCCceeeeeeeeCCCCccccHHHHHhhcCCCCeEEEeccEEEEEEecCCCCCCCeEEEEEEEe
Q 009272 177 DGLVEVGVLPYNGFTYDHLYGTKIGGTIIDQNSQRHTAADLLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRD 256 (538)
Q Consensus 177 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~r~~~~~~l~~~~~~~~~i~~~~~V~~I~~~~~~~~~~~~~gV~~~~ 256 (538)
+++.++|+.+.+++..++..+...+.++++..|.|+++..+++.+++.|++|++++.|++|++++++ .+++++||++.+
T Consensus 186 ~a~~e~G~~~~n~~~~d~~~G~~~g~~i~~~~g~R~saa~l~~~~~~~nl~Vl~~a~V~rIl~~~~~-~~~ra~GV~~~~ 264 (587)
T PLN02785 186 DSLLEVGVSPFNGFTYDHVYGTKVGGTIFDEFGRRHTAAELLAAGNPNKLRVLLHATVQKIVFDTSG-KRPRATGVIFKD 264 (587)
T ss_pred HHHHHcCCCccCCCCCCCccceeeeEEEeCCCCEEcCHHHHHhhcCCCCeEEEeCCEEEEEEEcCCC-CCceEEEEEEEE
Confidence 9999999988777666666666667777777899999888877778899999999999999998642 223899999987
Q ss_pred CCCCeEEEEeccCCCceEEEcCCCcCCHHHHHHcCCCChhhhhhCCCceeecCcccCccCccCCCceEEeeCCCCccchh
Q 009272 257 ATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVGPADHLKAHNITVVLDQPLVGQGMSDNPMNAIFVPSPVPVEVSL 336 (538)
Q Consensus 257 ~~g~~~~~~~~~~~a~~VVLaaGai~tp~lLl~SGig~~~~l~~~gi~~~~~~p~vG~~l~dh~~~~~~~~~~~~~~~~~ 336 (538)
.+|..+++.+...++++||||||+|+||+|||+|||||+.+|+++||+++.|+|.||+||+|||...+.+..+.+.....
T Consensus 265 ~~g~~~~~~~~~~~~~eVILsAGai~sP~lL~~SGIGp~~~L~~~gIpvv~dlP~VG~NL~DHp~~~i~~~~~~~~~~~~ 344 (587)
T PLN02785 265 ENGNQHQAFLSNNKGSEIILSAGAIGSPQMLLLSGIGPKKELKKHKIPVVLHNEHVGKGMADNPMNSIFVPSKAPVEQSL 344 (587)
T ss_pred CCCceEEEEeecccCceEEecccccCCHHHHHHcCCCCHHHHHHcCCCeeecCCCcccchhhCcccceEEEeCCCchhhh
Confidence 66765544322124689999999999999999999999999999999999999999999999999888887665543222
Q ss_pred hHhhccccccccccccCCCC------------CC----------CCC--CC-------------CCCccceeeEeeecCc
Q 009272 337 IQVVGITQFGSYIEGASGVN------------FA----------GGS--PS-------------PRPYRGGFIFEKIIGP 379 (538)
Q Consensus 337 ~~~~~~~~~~~~~~~~~g~~------------~~----------~~~--~~-------------~~~~~~~~~~~~~~~p 379 (538)
.+..+....+.|.+..+++. +. +.. .. ...+...+++..++.|
T Consensus 345 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~P 424 (587)
T PLN02785 345 IQTVGITKMGVYIEASSGFGQSPDSIHCHHGIMSAEIGQLSTIPPKQRTPEAIQAYIHRKKNLPHEAFNGGFILEKIAGP 424 (587)
T ss_pred HhhhhhhccccceecccccccCchhhhhhccccccccccccccCcccccchhhhhhccCcccccccccccceEEEEecCC
Confidence 33222222222221111100 00 000 00 0011112445677899
Q ss_pred CcceEEEecCCCCCCCCeeecCCCCCHHHHHHHHHHHHHHHHHHcCccccccccccc-hhHHhhhhccCCCCCCCCCCCC
Q 009272 380 VSTGHLELRTRNPNDTPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYDNM-SVETLLNMTASMPLNLLPKHSN 458 (538)
Q Consensus 380 ~s~g~v~l~~~d~~~~p~i~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~ 458 (538)
.|||+|+|.++||.+.|.|+++|+.++.|++.+.++++.+++++++.+++.+...+. +.+++.......+.+..|...+
T Consensus 425 ~SrG~V~L~ssdp~~~P~i~~ny~~~p~Dl~~~~~g~r~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 504 (587)
T PLN02785 425 ISTGHLSLINTNVDDNPSVTFNYFKHPQDLQRCVYGIRTIEKIVKTNHFTNFTQCDKQTMEKVLNMSVKANINLIPKHTN 504 (587)
T ss_pred CcceEEEecCCCCCcCCccccccCCCHHHHHHHHHHHHHHHHHHcChhhhhhccccccccccccccccccccccCCCCCC
Confidence 999999999999999999999999999999999999999999999988776642211 1111122111112223344456
Q ss_pred CHHHHHHHHHhccCCcccccccccCCCccCCCCcEeccCCceEEecccCCCCCCCchHHHHHHHHHHHHHHHHHhhhhc
Q 009272 459 TSTSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVVDGSTFYYSPGTNPQATVMMLGRYMGVRILSERLAS 537 (538)
Q Consensus 459 ~~~~~~~~~~~~~~~~~H~~Gt~~mG~VVD~~~rv~g~~nL~V~DaSv~P~~~~~NP~~Ti~ala~r~a~~i~~~~~~~ 537 (538)
+++++++|+|+...+.||++|||+||+|||+++||||++||||||+|+||..|++||++|+||+|+|+|++|+++++.+
T Consensus 505 ~d~~l~~~ir~~~~t~~H~~GTc~MG~VVD~~lrV~GV~~LRVvDaSi~P~~p~~np~atv~miaer~A~~Il~~~~~~ 583 (587)
T PLN02785 505 DTKSLEQFCKDTVITIWHYHGGCHVGKVVDQNYKVLGVSRLRVIDGSTFDESPGTNPQATVMMMGRYMGVKILRERLGR 583 (587)
T ss_pred CHHHHHHHHHHhcccccCCcccccCCCeECCCCeEeccCCeEEeecccCCCCCCCccHHHHHHHHHHHHHHHHHHhhhh
Confidence 7889999999999999999999999999999999999999999999999999999999999999999999999987653
No 2
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=100.00 E-value=1.1e-79 Score=625.59 Aligned_cols=479 Identities=42% Similarity=0.609 Sum_probs=367.0
Q ss_pred ccccccccCCCCCCccEEEECCCCchHHHhhhhcC--CCeEEEEeccCCCCCCCCcccchhhhhhh----cCCCCCCCCc
Q 009272 33 SFMRNATAAKPVSYYDYIVIGGGTAGCPLAASLSQ--NASVLLLERGDSPYGNPNITNSGSFSAEL----ADLSPTSPSQ 106 (538)
Q Consensus 33 ~~~~~~~~~~~~~~~DvIIVGsG~aG~~~A~~La~--g~~VlvlE~G~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 106 (538)
.+..+....+....||+||||||.|||++|.+|+| ..+|||||+|+.. +...+++.+...+ .+|.|.+.++
T Consensus 44 ~~~~~~~~~~~~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~---~~~~~~p~~~~~~q~s~~dw~y~t~Ps 120 (623)
T KOG1238|consen 44 SRPSDATGSELDSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP---PLYSDPPLLAANLQLSLYDWSYHTEPS 120 (623)
T ss_pred cccccccccccccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC---cccccchHHHHHhccccccccCcCccC
Confidence 34555555556778999999999999999999999 5999999999975 2333333333333 3789888877
Q ss_pred cc----cCCCceeecCcccccchhhhcccccccCC----hhhhhc--CCCChhhhhhhhhhhccccccCCCCch------
Q 009272 107 RF----ISEDGVVSTRARVLGGGTCINAGFYTRAE----PYYARE--AGWDGRLVNESYQWVEKKVVFRPPMQR------ 170 (538)
Q Consensus 107 ~~----~~~~~~~~~~g~~lGG~s~~n~~~~~r~~----~~~~~~--~gw~~~~l~~~~~~~e~~~~~~~~~~~------ 170 (538)
.. ..++...|+|||++||+|++|+|+|.|++ ++|.+. +||+++++.+||++.|+.....++..+
T Consensus 121 ~~ac~~m~~~~c~wpRGrVLGGsS~iN~m~Y~RG~r~Dyd~W~~~gnpgW~y~~vl~yf~k~E~~~~~~~~~~~y~~~~g 200 (623)
T KOG1238|consen 121 QHACLAMSEDRCYWPRGRVLGGSSVLNAMFYVRGNRRDYDRWAAEGNPGWSYDEVLPYFKKSEDKVVPDPELTPYHGAGG 200 (623)
T ss_pred hhhhhhhcCCceecCccceecccccccceEEecCCccchHHHHHhcCCCCCHHHHHHHHHHHhhccCCCcccCcccccCC
Confidence 65 78889999999999999999999999999 455554 679999999999999987655444332
Q ss_pred ------------hHHHHHHHHHHcCCCCCCCCccCCCCceeeeeee---eCCCCccccHHH-HHh-hc-CCCCeEEEecc
Q 009272 171 ------------WQSALRDGLVEVGVLPYNGFTYDHLYGTKIGGTI---IDQNSQRHTAAD-LLE-YA-NPSGLTVLLHA 232 (538)
Q Consensus 171 ------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~---~~~~g~r~~~~~-~l~-~~-~~~~~~i~~~~ 232 (538)
....+.++..++|... .+.+.....+..+ ...+|.|++... |+. .. .++|+.+..++
T Consensus 201 ~~~ve~~~~~~~~~~~~~~ag~e~G~~~-----~D~nG~~~tg~~~l~~t~~~g~R~s~~~a~l~~~~~~R~NL~~~~~~ 275 (623)
T KOG1238|consen 201 PLLVEAGVYPNNLFTAFHRAGTEIGGSI-----FDRNGERHTGASLLQYTIRNGIRVSLAKAYLKPIRLTRPNLHISRNA 275 (623)
T ss_pred cceeccccccCchhhHhHHhHHhcCCCc-----cCCCCccccchhhhhccccCCEEEEehhhhhhhhhccCccccccccc
Confidence 3456666677777431 1112222222222 236788887755 665 33 37899999999
Q ss_pred EEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCceEEEcCCCcCCHHHHHHcCCCChhhhhhCCCceeecCccc
Q 009272 233 SVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVGPADHLKAHNITVVLDQPLV 312 (538)
Q Consensus 233 ~V~~I~~~~~~~~~~~~~gV~~~~~~g~~~~~~~~~~~a~~VVLaaGai~tp~lLl~SGig~~~~l~~~gi~~~~~~p~v 312 (538)
.|++|.+|..+ .++.||++....|+.+++. +.|+|||+||+|+||+|||+|||||+++|+++||+++.|+|.|
T Consensus 276 ~vtrvl~D~~~---~~a~gv~~~~~~~~~~~v~----a~kEVILSAGAi~SPQLLMLSGIGP~~~L~~~gIpvv~dLP~V 348 (623)
T KOG1238|consen 276 AVTRVLIDPAG---KRAKGVEFVRDGGKEHTVK----ARKEVILSAGAINSPQLLMLSGIGPADHLKKLGIPVVLDLPGV 348 (623)
T ss_pred eEEEEEEcCCC---ceEEEEEEEecCceeeeec----ccceEEEeccccCCHHHHHHcCCCcHHHHHhcCCCeeccCccc
Confidence 99999999653 2899999986447888887 6799999999999999999999999999999999999999999
Q ss_pred CccCccCCCceEEeeCCCCccchhhHhhccccccccccccCCCCC-----------------CCCCCC------------
Q 009272 313 GQGMSDNPMNAIFVPSPVPVEVSLIQVVGITQFGSYIEGASGVNF-----------------AGGSPS------------ 363 (538)
Q Consensus 313 G~~l~dh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-----------------~~~~~~------------ 363 (538)
|+||+||++..++...+.+......+...+.....|+...+|... ..+++.
T Consensus 349 G~nLqDH~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~G~~~~~~~e~~~f~~t~~~~~~~~~PD~~~~~~~~~~~~ 428 (623)
T KOG1238|consen 349 GQNLQDHPMNPGFVFSTNPVELSLIRLVGITTVGQYLEGGSGPLASPGVETLGFINTVSSNLSLDWPDIELHFVAGSLSS 428 (623)
T ss_pred ccccccccccceeeecCCCccccccccccchHHHHHHHcCCCCcccCcceeeEEeccccccCcCCCCCeeEEeccccccc
Confidence 999999999988777666543222222221111112211111000 001110
Q ss_pred ----------CC----------CccceeeEeeecCcCcceEEEecCCCCCCCCeeecCCCCCHHHHHHHHHHHHHHHHHH
Q 009272 364 ----------PR----------PYRGGFIFEKIIGPVSTGHLELRTRNPNDTPSVTFNYFKEPEDLQRCVQGISTIEKII 423 (538)
Q Consensus 364 ----------~~----------~~~~~~~~~~~~~p~s~g~v~l~~~d~~~~p~i~~~~~~~~~D~~~~~~~~~~~~~i~ 423 (538)
.+ ......++..++.|.|+|+|+|+++||.+.|.|+++|+.+|+|++.+.++++.+.++.
T Consensus 429 ~~~~~~~~~~~~~y~~~~~~~~~~~~~~i~~~~l~P~SrG~l~L~s~nP~~~P~I~~NY~~~p~Dv~~~vegi~~~~~l~ 508 (623)
T KOG1238|consen 429 DGLTALRKALGEIYQALFGELTNSDSFVIFPKLLRPKSRGRLKLRSTNPRDNPLITPNYFTHPEDVATLVEGIRTIIRLS 508 (623)
T ss_pred cchhhhhhhcchHHHHhhhhhhcCceeEEeehhcCCCccceEEecCCCCCcCceeccCcCCCHHHHHHHHHHHHHHHHHH
Confidence 00 0112456788899999999999999999999999999999999999999999999999
Q ss_pred cCccccccccccchhHHhhhhccCCCCCCCCCCCCCHHHHHHHHHhccCCcccccccccCC------CccCCCCcEeccC
Q 009272 424 ESKSFSKFKYDNMSVETLLNMTASMPLNLLPKHSNTSTSLEQFCRDTVMTIWHYHGGCQVG------KVVDHDYKVLGVD 497 (538)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~H~~Gt~~mG------~VVD~~~rv~g~~ 497 (538)
++.+|+++...... ...+.+.. ....+++++++|+|....+.||++|||+|| +|||+++||||++
T Consensus 509 ~s~af~~~~~r~~~--------~~~~~c~~-~~~~sd~yw~c~~R~~~~TiyH~~GtckMGp~~D~~aVVD~~lrV~Gv~ 579 (623)
T KOG1238|consen 509 NSKAFQRFGARLWK--------KPVPGCDL-LAFLSDAYWECFCRHTVVTIYHYSGTCKMGPSSDPTAVVDPQLRVHGVR 579 (623)
T ss_pred cCHHHHHhcchhcc--------ccCCCccc-ccCCCHHHHHHHHHhccceeeccCCceEeCCccCCCcccCCcceecccc
Confidence 99999888765421 01111111 135689999999999999999999999999 8999999999999
Q ss_pred CceEEecccCCCCCCCchHHHHHHHHHHHHHHHHHhhh
Q 009272 498 ALRVVDGSTFYYSPGTNPQATVMMLGRYMGVRILSERL 535 (538)
Q Consensus 498 nL~V~DaSv~P~~~~~NP~~Ti~ala~r~a~~i~~~~~ 535 (538)
||||+|||+||.+|++||++|+++||+|+||.|.++..
T Consensus 580 ~LRVVDaSimP~~psgN~nA~v~MIgek~ad~Ik~~~~ 617 (623)
T KOG1238|consen 580 GLRVVDASIMPESPSGNPNAPVMMIGEKAADMIKEEWL 617 (623)
T ss_pred CceEeeccccCCCCCCCccHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999998887753
No 3
>PRK02106 choline dehydrogenase; Validated
Probab=100.00 E-value=1.8e-70 Score=587.43 Aligned_cols=465 Identities=28% Similarity=0.415 Sum_probs=342.6
Q ss_pred CCCCccEEEECCCCchHHHhhhhcC--CCeEEEEeccCCCC-CCCCcccchhhhhh----hcCCCCCCCCccccCCCcee
Q 009272 43 PVSYYDYIVIGGGTAGCPLAASLSQ--NASVLLLERGDSPY-GNPNITNSGSFSAE----LADLSPTSPSQRFISEDGVV 115 (538)
Q Consensus 43 ~~~~~DvIIVGsG~aG~~~A~~La~--g~~VlvlE~G~~~~-~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 115 (538)
+..+|||||||||++|+++|.+|++ |.+|||||+|+... .......+..+... ..+|.+.+.++.+..++.+.
T Consensus 2 ~~~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 81 (560)
T PRK02106 2 TTMEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGPDYRWDFFIQMPAALAFPLQGKRYNWAYETEPEPHMNNRRME 81 (560)
T ss_pred CCCcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCCcccCCCcceeCcHHHHHhcCCCceeeceecccCCCCCCCeee
Confidence 3567999999999999999999999 89999999997532 12222222211111 12455666677777777889
Q ss_pred ecCcccccchhhhcccccccCChhhhhc-------CCCChhhhhhhhhhhccccccC----------------CCCchhH
Q 009272 116 STRARVLGGGTCINAGFYTRAEPYYARE-------AGWDGRLVNESYQWVEKKVVFR----------------PPMQRWQ 172 (538)
Q Consensus 116 ~~~g~~lGG~s~~n~~~~~r~~~~~~~~-------~gw~~~~l~~~~~~~e~~~~~~----------------~~~~~~~ 172 (538)
+.+|++|||+|.+|++.+.|+.+.+++. .+|++++++|||+++|+.+... ....+..
T Consensus 82 ~~~g~~lGGsS~iN~~~~~R~~~~Dfd~w~~~~g~~~Ws~~~l~py~~k~E~~~~~~~~~~g~~gp~~~~~~~~~~~~~~ 161 (560)
T PRK02106 82 CPRGKVLGGSSSINGMVYIRGNAMDYDNWAELPGLEGWSYADCLPYFKKAETRDGGEDDYRGGDGPLSVTRGKPGTNPLF 161 (560)
T ss_pred cccccccCCCCCccceEEecCCHHHHHHHHhhcCCCCCCHHHHHHHHHHhhccCCCCccccCCCCCEEEeCCCCCCCHHH
Confidence 9999999999999999999999854432 4799999999999999865210 1124456
Q ss_pred HHHHHHHHHcCCCCCCCCccCCCCceeeeeeeeCCCCccccHHH-HHh-hcCCCCeEEEeccEEEEEEecCCCCCCCeEE
Q 009272 173 SALRDGLVEVGVLPYNGFTYDHLYGTKIGGTIIDQNSQRHTAAD-LLE-YANPSGLTVLLHASVHKILFRNKGKARPVAH 250 (538)
Q Consensus 173 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~r~~~~~-~l~-~~~~~~~~i~~~~~V~~I~~~~~~~~~~~~~ 250 (538)
+.+.++++++|+............++...... ..+|.|+++.. |++ ..++.|++|++++.|++|+++++ +++
T Consensus 162 ~~~~~a~~~lG~~~~~~~~~~~~~g~~~~~~~-~~~g~R~s~~~~~l~~a~~~~nl~i~~~a~V~rI~~~~~-----~a~ 235 (560)
T PRK02106 162 QAFVEAGVQAGYPRTDDLNGYQQEGFGPMDRT-VTNGRRWSAARAYLDPALKRPNLTIVTHALTDRILFEGK-----RAV 235 (560)
T ss_pred HHHHHHHHHcCCCcCCCCCCCCCceeEEEeee-cCCCEEEChHHHhhccccCCCCcEEEcCCEEEEEEEeCC-----eEE
Confidence 77888899999864332111111122111111 25788887765 776 45578999999999999999854 999
Q ss_pred EEEEEeCCCCeEEEEeccCCCceEEEcCCCcCCHHHHHHcCCCChhhhhhCCCceeecCcccCccCccCCCceEEeeCCC
Q 009272 251 GVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVGPADHLKAHNITVVLDQPLVGQGMSDNPMNAIFVPSPV 330 (538)
Q Consensus 251 gV~~~~~~g~~~~~~~~~~~a~~VVLaaGai~tp~lLl~SGig~~~~l~~~gi~~~~~~p~vG~~l~dh~~~~~~~~~~~ 330 (538)
||++.+.++. .++. ++++||||||+|+||+|||+|||||+++|+++||+++.++|.||+||+||+...+.+..+.
T Consensus 236 GV~~~~~~~~-~~~~----~ak~VILaaGai~TP~LLl~SGIG~~~~L~~~gI~~~~dlP~VG~NL~dH~~~~~~~~~~~ 310 (560)
T PRK02106 236 GVEYERGGGR-ETAR----ARREVILSAGAINSPQLLQLSGIGPAEHLKELGIPVVHDLPGVGENLQDHLEVYIQYECKQ 310 (560)
T ss_pred EEEEEeCCcE-EEEE----eeeeEEEccCCCCCHHHHhhcCCCChHHHHhcCCceEeeCCCCCcChhhCccceEEEEeCC
Confidence 9999875443 3333 6899999999999999999999999999999999999999999999999999887776544
Q ss_pred Cccch-----h------hHhh----ccc-----cccccccccCCCC-------CCC-CCCC--CCC--ccceeeEeeecC
Q 009272 331 PVEVS-----L------IQVV----GIT-----QFGSYIEGASGVN-------FAG-GSPS--PRP--YRGGFIFEKIIG 378 (538)
Q Consensus 331 ~~~~~-----~------~~~~----~~~-----~~~~~~~~~~g~~-------~~~-~~~~--~~~--~~~~~~~~~~~~ 378 (538)
+.... . .++. +.. ..+.|.....+.. +.+ .... ... ....++......
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (560)
T PRK02106 311 PVSLYPALKWWNKPKIGAEWLFTGTGLGASNHFEAGGFIRSRAGVDWPNIQYHFLPVAIRYDGSNAVKGHGFQAHVGPMR 390 (560)
T ss_pred CcccccccchhhhhHHHHHHHhcCCCCccccccceeeEEecCCCCCCCCeEEEEeeccccccCCCCCCCCeEEEEEEecC
Confidence 32110 0 0000 000 0001111100000 000 0000 000 011223335678
Q ss_pred cCcceEEEecCCCCCCCCeeecCCCCCHHHHHHHHHHHHHHHHHHcCccccccccccchhHHhhhhccCCCCCCCCC-CC
Q 009272 379 PVSTGHLELRTRNPNDTPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYDNMSVETLLNMTASMPLNLLPK-HS 457 (538)
Q Consensus 379 p~s~g~v~l~~~d~~~~p~i~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~ 457 (538)
|.|+|+|+|+++|+++.|.|+++|+.++.|++.+.++++.+++++++.+++.+...+ ..|. ..
T Consensus 391 P~srG~V~L~s~d~~~~P~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~----------------~~p~~~~ 454 (560)
T PRK02106 391 SPSRGSVKLKSADPRAHPSILFNYMSTEQDWREFRDAIRLTREIMAQPALDPYRGRE----------------ISPGADV 454 (560)
T ss_pred CcceEEEEEeCCCCccCceEccccCCCHHHHHHHHHHHHHHHHHHcChhhhhccccc----------------cCCCccc
Confidence 999999999999999999999999999999999999999999999988776543221 1221 23
Q ss_pred CCHHHHHHHHHhccCCcccccccccCC----CccCCCCcEeccCCceEEecccCCCCCCCchHHHHHHHHHHHHHHHHHh
Q 009272 458 NTSTSLEQFCRDTVMTIWHYHGGCQVG----KVVDHDYKVLGVDALRVVDGSTFYYSPGTNPQATVMMLGRYMGVRILSE 533 (538)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~H~~Gt~~mG----~VVD~~~rv~g~~nL~V~DaSv~P~~~~~NP~~Ti~ala~r~a~~i~~~ 533 (538)
.+++++++|++....+.+|++|||||| +|||++|||||++||||+|+||||+.+++||++|+||+|+|+||+|+++
T Consensus 455 ~~~~~~~~~i~~~~~~~~H~~GTcrMG~d~~sVVD~~~rV~Gv~nLrVvDaSv~P~~~~~np~~ti~aiaeraAd~I~~~ 534 (560)
T PRK02106 455 QTDEEIDAFVREHAETAYHPSCTCKMGTDPMAVVDPEGRVHGVEGLRVVDASIMPTITNGNLNAPTIMIAEKAADLIRGR 534 (560)
T ss_pred CCHHHHHHHHHhccCcCcccCCCeecCCCCCeeECCCCEEeccCCeEEeeccccCCCCCcchHHHHHHHHHHHHHHHhcc
Confidence 577889999999988999999999999 6999999999999999999999999999999999999999999999875
Q ss_pred h
Q 009272 534 R 534 (538)
Q Consensus 534 ~ 534 (538)
.
T Consensus 535 ~ 535 (560)
T PRK02106 535 T 535 (560)
T ss_pred C
Confidence 3
No 4
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=100.00 E-value=4.9e-70 Score=581.11 Aligned_cols=459 Identities=28% Similarity=0.410 Sum_probs=339.9
Q ss_pred cEEEECCCCchHHHhhhhcC-C-CeEEEEeccCCCCC-CCCcccchhhhhhh----cCCCCCCCCccccCCCceeecCcc
Q 009272 48 DYIVIGGGTAGCPLAASLSQ-N-ASVLLLERGDSPYG-NPNITNSGSFSAEL----ADLSPTSPSQRFISEDGVVSTRAR 120 (538)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g-~~VlvlE~G~~~~~-~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~g~ 120 (538)
||||||||++|+++|.+|++ + .+|||||+|+.... ......+..+...+ .+|.+.+.++.+..++.+.+.+|+
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~ 80 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGGSDYPWDLLIQMPAALAYPAGNKRYNWIYETEPEPHMNNRRVGHARGK 80 (532)
T ss_pred CEEEECCCchHHHHHHHhccCCCCeEEEEecCCCCCCCCcceeCcHHHHHhcCCCCcceeeEcccCCCCCCceEeeeccc
Confidence 89999999999999999999 6 79999999985322 22222322211111 245666777777778889999999
Q ss_pred cccchhhhcccccccCChhhhhc-------CCCChhhhhhhhhhhcccccc---------------CCCCchhHHHHHHH
Q 009272 121 VLGGGTCINAGFYTRAEPYYARE-------AGWDGRLVNESYQWVEKKVVF---------------RPPMQRWQSALRDG 178 (538)
Q Consensus 121 ~lGG~s~~n~~~~~r~~~~~~~~-------~gw~~~~l~~~~~~~e~~~~~---------------~~~~~~~~~~~~~~ 178 (538)
+|||+|.+|++.+.|+.+.+++. .+|.|+++.+||+++|..+.. .+...+..+.+.++
T Consensus 81 ~lGGss~in~~~~~R~~~~d~~~w~~~~g~~~W~~~~l~py~~~~E~~~~~~~~~~g~~G~~~v~~~~~~~~~~~~~~~a 160 (532)
T TIGR01810 81 VLGGSSSINGMIYQRGNPMDYEKWAKPEGMESWDYADCLPYYKRLETTFGGEKPYRGHDGPIKVRRGPADNPLFQAFIEA 160 (532)
T ss_pred ccCCCCCEeeeEEecCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCCCCcccCCCCCCEEEecCCCCCHHHHHHHHH
Confidence 99999999999999999854332 479999999999999986541 11124456778888
Q ss_pred HHHcCCCCCCCCccCCCCceeeeeeeeCCCCccccHHH-HHh-hcCCCCeEEEeccEEEEEEecCCCCCCCeEEEEEEEe
Q 009272 179 LVEVGVLPYNGFTYDHLYGTKIGGTIIDQNSQRHTAAD-LLE-YANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRD 256 (538)
Q Consensus 179 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~r~~~~~-~l~-~~~~~~~~i~~~~~V~~I~~~~~~~~~~~~~gV~~~~ 256 (538)
++++|++..+........++......+ .+|.|+++.. |++ +.++.|++|+++++|++|+++++ +++||++.+
T Consensus 161 ~~~~G~~~~~~~~~~~~~g~~~~~~~~-~~g~r~s~~~~~l~~a~~r~nl~i~~~~~V~rI~~~~~-----ra~GV~~~~ 234 (532)
T TIGR01810 161 GVEAGYNKTPDVNGFRQEGFGPMDSTV-HNGRRVSAARAYLHPAMKRPNLEVQTRAFVTKINFEGN-----RATGVEFKK 234 (532)
T ss_pred HHHcCCCccCCCCCCCccceEEEEEEc-CCCEEEcHHHHHhhhhccCCCeEEEeCCEEEEEEecCC-----eEEEEEEEe
Confidence 999998754322111111211111112 4788888765 776 44588999999999999999855 999999986
Q ss_pred CCCCeEEEEeccCCCceEEEcCCCcCCHHHHHHcCCCChhhhhhCCCceeecCcccCccCccCCCceEEeeCCCCccch-
Q 009272 257 ATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVGPADHLKAHNITVVLDQPLVGQGMSDNPMNAIFVPSPVPVEVS- 335 (538)
Q Consensus 257 ~~g~~~~~~~~~~~a~~VVLaaGai~tp~lLl~SGig~~~~l~~~gi~~~~~~p~vG~~l~dh~~~~~~~~~~~~~~~~- 335 (538)
. +...++. ++|+||||||+++||+||++|||||+++|+++||+++.++|.||+|||||+...+.+..+.+....
T Consensus 235 ~-~~~~~~~----~ak~VIlaAGai~SP~LLl~SGIG~~~~L~~~gI~~~~~lp~VG~nL~DH~~~~~~~~~~~~~~~~~ 309 (532)
T TIGR01810 235 G-GRKEHTE----ANKEVILSAGAINSPQLLQLSGIGDAEHLRELGIEPRIHLPGVGENLQDHLEVYVQHACKQPVSLYP 309 (532)
T ss_pred C-CcEEEEE----EeeeEEEccCCCCCHHHHHhcCCCCHHHHHhcCCCeEeeCCccccchhhcccceeEEEecCCccccc
Confidence 3 3333333 689999999999999999999999999999999999999999999999999988877655432110
Q ss_pred hh----------Hh----hccc---c--ccccccccCCCCCC-------C-C--CCCCCC--ccceeeEeeecCcCcceE
Q 009272 336 LI----------QV----VGIT---Q--FGSYIEGASGVNFA-------G-G--SPSPRP--YRGGFIFEKIIGPVSTGH 384 (538)
Q Consensus 336 ~~----------~~----~~~~---~--~~~~~~~~~g~~~~-------~-~--~~~~~~--~~~~~~~~~~~~p~s~g~ 384 (538)
.. ++ .+.. . .+.|.....+..+. + . ...... ....++......|.|||+
T Consensus 310 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~srG~ 389 (532)
T TIGR01810 310 SLNWLKQPFIGAQWLFGRKGAGASNHFEGGGFVRSNDDVDYPNIQYHFLPVAIRYDGTKAPKAHGFQVHVGPMYSNSRGH 389 (532)
T ss_pred ccchhhhhHHHHHHHhcCCCCccccccceeEEEecCCCCCCCCeEEEEEeeeeccCCCCCCCCCcEEEEEeecCCCCceE
Confidence 00 00 0000 0 00111110000000 0 0 000000 001123345678999999
Q ss_pred EEecCCCCCCCCeeecCCCCCHHHHHHHHHHHHHHHHHHcCccccccccccchhHHhhhhccCCCCCCCC-CCCCCHHHH
Q 009272 385 LELRTRNPNDTPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYDNMSVETLLNMTASMPLNLLP-KHSNTSTSL 463 (538)
Q Consensus 385 v~l~~~d~~~~p~i~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~~~ 463 (538)
|+|+++||.+.|.|+++|+.++.|++.+.++++.+++++++.+++.+.... ..| ....+++++
T Consensus 390 V~L~s~dp~~~P~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~----------------~~p~~~~~~d~~~ 453 (532)
T TIGR01810 390 VKIKSKDPFEKPEIVFNYMSHEEDWREFREAIRVTREILKQKALDPYRGGE----------------ISPGPEVQTDEEI 453 (532)
T ss_pred EEecCCCCccCceeccccCCCHHHHHHHHHHHHHHHHHHcCcchhhccccc----------------cCCCCCCCCHHHH
Confidence 999999999999999999999999999999999999999988776653222 112 234678999
Q ss_pred HHHHHhccCCcccccccccCC------CccCCCCcEeccCCceEEecccCCCCCCCchHHHHHHHHHHHHHHHHHh
Q 009272 464 EQFCRDTVMTIWHYHGGCQVG------KVVDHDYKVLGVDALRVVDGSTFYYSPGTNPQATVMMLGRYMGVRILSE 533 (538)
Q Consensus 464 ~~~~~~~~~~~~H~~Gt~~mG------~VVD~~~rv~g~~nL~V~DaSv~P~~~~~NP~~Ti~ala~r~a~~i~~~ 533 (538)
++|+|....+.+|++|||||| +|||+++||||++||||||+||||+.+++||++|+||+|+|+||.|+++
T Consensus 454 ~~~ir~~~~~~~H~~GTcrMG~~~~~~~VVD~~~rV~Gv~nLrVvDaSv~P~~~~~n~~~t~~aiaeraAd~I~~~ 529 (532)
T TIGR01810 454 DEFVRRHGETALHPCGTCKMGPASDEMSVVDPETRVHGMEGLRVVDASIMPRITNGNLNAPVIMMGEKAADIIRGK 529 (532)
T ss_pred HHHHhhhcccccccccceeCCCcccCCCccCCCCeEeccCCcEEeeeccCCCCCCCccHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999 4999999999999999999999999999999999999999999999865
No 5
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=100.00 E-value=3e-63 Score=523.93 Aligned_cols=464 Identities=27% Similarity=0.370 Sum_probs=348.8
Q ss_pred CCCCccEEEECCCCchHHHhhhhcC-CCeEEEEeccCCCCCCCCcccchhhhhhhc----CCCCCCCCccccCCCceeec
Q 009272 43 PVSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSPYGNPNITNSGSFSAELA----DLSPTSPSQRFISEDGVVST 117 (538)
Q Consensus 43 ~~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 117 (538)
+..+||+||||||.+|+++|.+|++ |.+|||||+|+..... ....+..+..... +|.+.+.++.+..++.+.+.
T Consensus 4 ~~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG~~~~~~-~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~r~~~~~ 82 (542)
T COG2303 4 MKMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGGPDRRP-LIQMPAAYAFLMNGPRYDWGFRTEPEPHLRGRELAWP 82 (542)
T ss_pred ccCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCCCCCCcc-ceecchhHhhhccCcccCCccccCcccCCCCcccccc
Confidence 4668999999999999999999999 9999999999853321 3344444444333 47788888888889999999
Q ss_pred CcccccchhhhcccccccCChhhhhc-------CCCChhhhhhhhhhhccccccC--------C-----------CCchh
Q 009272 118 RARVLGGGTCINAGFYTRAEPYYARE-------AGWDGRLVNESYQWVEKKVVFR--------P-----------PMQRW 171 (538)
Q Consensus 118 ~g~~lGG~s~~n~~~~~r~~~~~~~~-------~gw~~~~l~~~~~~~e~~~~~~--------~-----------~~~~~ 171 (538)
++++|||+|++|++++.|+.+.+|+. .+|+++++.|||+++|+...+. . ...+.
T Consensus 83 rgk~lGGsS~ing~~~~R~~~~Df~~w~~~~G~~~W~y~d~lPyf~~aE~~~~~~g~~~~~~~g~~gp~~~~~~~~~~~~ 162 (542)
T COG2303 83 RGKVLGGSSSINGMVYVRGHPEDFDAWAQESGAPGWPYDDVLPYFKRAEDLLGVGGQDLRTWHGGGGPLPVSPPRSPNPI 162 (542)
T ss_pred ccCcccchhhhccceeecCCHHHHHHHHhhcCCCCCCccccHHHHHHHHhhcCCCCCCCCCCcCCCCCccccCCCCchHH
Confidence 99999999999999999999965532 5599999999999999755431 1 11334
Q ss_pred HHHHHHHHHHcCCCCCCCCccCCCCceeeeeeeeCCCCccccHHH-HHh-hcCCCCeEEEeccEEEEEEecCCCCCCCeE
Q 009272 172 QSALRDGLVEVGVLPYNGFTYDHLYGTKIGGTIIDQNSQRHTAAD-LLE-YANPSGLTVLLHASVHKILFRNKGKARPVA 249 (538)
Q Consensus 172 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~r~~~~~-~l~-~~~~~~~~i~~~~~V~~I~~~~~~~~~~~~ 249 (538)
...+.++..++|++..+.+.-....++...+..+ .+|.|+++.. |++ +.+++|++|++++.|++|+++++ ++
T Consensus 163 ~~a~~~a~~~~G~~~~~~~~~~~~~g~g~~~~~~-~~g~r~sa~~a~l~~a~~~~nl~v~t~a~v~ri~~~~~-----r~ 236 (542)
T COG2303 163 ARAFIEAGEQLGFPTTPDPNGADQEGFGPYCVTI-CNGRRWSAARAYLKPALKRPNLTLLTGARVRRILLEGD-----RA 236 (542)
T ss_pred HHHHHHHHHHcCCCcCcccccCCCCCcccceeec-cCCeEeechhhcchhHhcCCceEEecCCEEEEEEEECC-----ee
Confidence 5677777788888754432221111222222222 3788887765 666 67889999999999999999998 99
Q ss_pred EEEEEEeCCCC-eEEEEeccCCCceEEEcCCCcCCHHHHHHcCCCChhhhhhCCCceeecCcccCccCccCCCceEEeeC
Q 009272 250 HGVVFRDATDA-EHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVGPADHLKAHNITVVLDQPLVGQGMSDNPMNAIFVPS 328 (538)
Q Consensus 250 ~gV~~~~~~g~-~~~~~~~~~~a~~VVLaaGai~tp~lLl~SGig~~~~l~~~gi~~~~~~p~vG~~l~dh~~~~~~~~~ 328 (538)
+||++...++. ..... ++++||||||+|+||+|||+||||+...+..+++.++.++|.||+|||||....+.+..
T Consensus 237 ~gv~~~~~~~~~~~~~~----a~~~viL~AGai~Sp~LL~~Sgig~~~~~~~~g~~~v~~~~~vg~nl~dH~~~~~~~~~ 312 (542)
T COG2303 237 VGVEVEIGDGGTIETAV----AAREVVLAAGAINSPKLLLLSGIGPADHLLEHGIDVVGRLPGVGQNLQDHLEIYVAFEA 312 (542)
T ss_pred EEEEEEeCCCCceEEEe----cCceEEEeccccCCHHHHHhcCCCchhhhhhcCCeeeecCcchhHHHHhhhhhhhheec
Confidence 99999864432 23333 78999999999999999999999999999999999999999999999999988777665
Q ss_pred CCCccchhhHhhcccccc--cccccc----------CCCCCC------CCCC-C----------CCCccceeeEeeecCc
Q 009272 329 PVPVEVSLIQVVGITQFG--SYIEGA----------SGVNFA------GGSP-S----------PRPYRGGFIFEKIIGP 379 (538)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~--~~~~~~----------~g~~~~------~~~~-~----------~~~~~~~~~~~~~~~p 379 (538)
..+..............+ .|.... .++... ++.+ + .......++......|
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~gf~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rp 392 (542)
T COG2303 313 TEPTNDSVLSLFSKLGIGADRYLLTRDGPGATNHFEGGFVRSGPAGEYPDGQYHFAPLPLAIRAAGAEHGFTLHVGPMRP 392 (542)
T ss_pred cCccccccccccccccccceeEEeecCCCcccccccccccccCccccCCCcccccccccccccccccCCccEEeeccCCC
Confidence 544311111000000000 011100 010000 0000 0 0111233455667889
Q ss_pred CcceEEEecCCCCCCCCeeecCCCCCHHHHHHHHHHHHHHHHHHcCccccccccccchhHHhhhhccCCCCCCCC-CCCC
Q 009272 380 VSTGHLELRTRNPNDTPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYDNMSVETLLNMTASMPLNLLP-KHSN 458 (538)
Q Consensus 380 ~s~g~v~l~~~d~~~~p~i~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~ 458 (538)
.|+|.|.+++.|+...|.|+++|.+++.|+..+.++++..++++....+..+...+ ..| ....
T Consensus 393 ~srg~v~~~~~d~~~~p~i~~~~~~~~~d~~~~~~~~~~~r~i~~~~~~~~~~~~e----------------~~~~~~~~ 456 (542)
T COG2303 393 KSRGSVTLRSPDPDNRPVIDPNYLSAEGDRAIFRAGIRLTREIIGQPALDARRKAE----------------LAPGPRVT 456 (542)
T ss_pred ccccceecCCCCCcCCcccCccccCchhHHHHHHHHHHHHHHHhcCccchhhHHHh----------------hcCCCccc
Confidence 99999999999999999999999999999999999999999999865555444333 122 2445
Q ss_pred CHHHHHHHHHhccCCcccccccccCC-----CccCCCCcEeccCCceEEecccCCCCCCCchHHHHHHHHHHHHHHHHHh
Q 009272 459 TSTSLEQFCRDTVMTIWHYHGGCQVG-----KVVDHDYKVLGVDALRVVDGSTFYYSPGTNPQATVMMLGRYMGVRILSE 533 (538)
Q Consensus 459 ~~~~~~~~~~~~~~~~~H~~Gt~~mG-----~VVD~~~rv~g~~nL~V~DaSv~P~~~~~NP~~Ti~ala~r~a~~i~~~ 533 (538)
++++++.|++....+.+|++|||+|| +|+|++|||||++||||+|+|+||+++++||++||+|||+|+||+|+++
T Consensus 457 ~~~~~~~~~~~~~~t~~H~~GT~rMG~Dp~~~V~d~~lrv~g~~nL~VvDaSvmPt~~~~Np~~ti~ala~raA~~I~~~ 536 (542)
T COG2303 457 TDEDISAAIRFLARTAYHPMGTCRMGSDPAAVVDDPYLRVHGLENLRVVDASVMPTSTGVNPNLTIIALAERAADHILGD 536 (542)
T ss_pred cHHHHHHHHHhccCccccccccccCCCCchhhccccccccccCCCeEEeCcccCcCccCCCccHhHHHHHHHHHHHHhhc
Confidence 67789999999999999999999999 3555999999999999999999999999999999999999999999974
No 6
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=100.00 E-value=4.9e-48 Score=401.89 Aligned_cols=436 Identities=16% Similarity=0.150 Sum_probs=275.0
Q ss_pred ccEEEECCCCchHHHhhhhcC-CCeEEEEeccCCCCCCC-C---------cccchhhhhhhc----CCC-C-------CC
Q 009272 47 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSPYGNP-N---------ITNSGSFSAELA----DLS-P-------TS 103 (538)
Q Consensus 47 ~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~~~~~-~---------~~~~~~~~~~~~----~~~-~-------~~ 103 (538)
|||||||+|++|+++|+.|++ |++|+|||+|....... . ......+....+ ..+ + +.
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSFLKIGAHKKNEIEYQKDIDKFVNVIKGALQSVSVPVSNLVIPTL 80 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCCCcccccccccccccccHHHHHHHHhhhccccccccccCCcCCC
Confidence 799999999999999999999 99999999998754211 0 001122222111 100 0 00
Q ss_pred CC---c----ccc--CC--------Ccee-ecCcccccchhhhcccccccCChhhhh--cCCCCh--hhhhhhhhhhccc
Q 009272 104 PS---Q----RFI--SE--------DGVV-STRARVLGGGTCINAGFYTRAEPYYAR--EAGWDG--RLVNESYQWVEKK 161 (538)
Q Consensus 104 ~~---~----~~~--~~--------~~~~-~~~g~~lGG~s~~n~~~~~r~~~~~~~--~~gw~~--~~l~~~~~~~e~~ 161 (538)
.+ + .+. .+ ..+. ..+-+.|||+|.+|++.++|..++... ..+||+ ++|+|||+++|+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~R~vGGsS~hW~g~~~R~~p~~r~g~~~dWPI~y~eL~PyY~~Ae~~ 160 (544)
T TIGR02462 81 DPTAWSASIESFFVSNGKNPEQDPFRNLSGEAVTRGVGGMSTHWTCATPRFHREERPKLSDDAAEDDAEWDRLYTKAESL 160 (544)
T ss_pred CccccccCCCcceecCCCCcccCchhccChhheeeccCchhhhcCcccCCCCHHhccCCCCCCCCCHHHHHHHHHHHHHH
Confidence 00 0 000 00 0111 357889999999999999999884211 146885 8999999999999
Q ss_pred cccCCCC--chh--HHHHHHHHHHc-CC-CCCCCCccCCCCceeeeeeeeCCCCccccHH-HHHh-----hcCCCCeEEE
Q 009272 162 VVFRPPM--QRW--QSALRDGLVEV-GV-LPYNGFTYDHLYGTKIGGTIIDQNSQRHTAA-DLLE-----YANPSGLTVL 229 (538)
Q Consensus 162 ~~~~~~~--~~~--~~~~~~~~~~~-g~-~~~~~~~~~~~~~~~~~~~~~~~~g~r~~~~-~~l~-----~~~~~~~~i~ 229 (538)
+++.+.. .+. ...+....+++ |. ...+.. ..|... .| ..+.+++.. +.++ .+++.|++|+
T Consensus 161 ~gv~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~P-----lA~~~~--~c-~~~ak~s~~~t~~~~~~~~~~~~~n~~l~ 232 (544)
T TIGR02462 161 IGTSTDQFDESIRHNLVLRKLQDEYKGQRDFQPLP-----LACHRR--TD-PTYVEWHSADTVFDLQPNDDAPSERFTLL 232 (544)
T ss_pred hCCCCCcCCCcccchhHHHHHHHHhccccccccCc-----hhhhcc--CC-CccceecCCccchhhhhhhhccCCCEEEE
Confidence 8876532 111 11111222222 22 111110 011110 01 123333322 2222 2247789999
Q ss_pred eccEEEEEEecCCCCCCCeEEEEEEEeC-CCCeEEEEeccCCCceEEEcCCCcCCHHHHHHcCCCChhhhhhCCCceeec
Q 009272 230 LHASVHKILFRNKGKARPVAHGVVFRDA-TDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVGPADHLKAHNITVVLD 308 (538)
Q Consensus 230 ~~~~V~~I~~~~~~~~~~~~~gV~~~~~-~g~~~~~~~~~~~a~~VVLaaGai~tp~lLl~SGig~~~~l~~~gi~~~~~ 308 (538)
+++.|++|++++++ ..+|++|++.+. +|+.+++ .|+.||||||+|+||||||+|+++.... ..|+..-..
T Consensus 233 ~~a~v~~i~~d~~~--~~~v~~v~~~d~~~g~~~~v-----~A~~vVLAagaIetpRLLL~S~~~~~~~--p~gl~Nss~ 303 (544)
T TIGR02462 233 TNHRCTRLVRNETN--ESEIEAALVRDLLSGDRFEI-----KADVYVLACGAVHNPQILVNSGFGQLGR--PDPTNPPPL 303 (544)
T ss_pred cCCEEEEEEeCCCC--CceeEEEEEEECCCCcEEEE-----ECCEEEEccCchhhHHHHHhCCCCCCcC--CCCcCCCCC
Confidence 99999999998642 128999999986 5666655 4899999999999999999999874221 112211111
Q ss_pred CcccCccCccCCCceEEeeCCCCccchh------hHhhcccccccccccc-CC--------------CCCCCC--CCC--
Q 009272 309 QPLVGQGMSDNPMNAIFVPSPVPVEVSL------IQVVGITQFGSYIEGA-SG--------------VNFAGG--SPS-- 363 (538)
Q Consensus 309 ~p~vG~~l~dh~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~-~g--------------~~~~~~--~~~-- 363 (538)
++.||+||+||+...+...++.+....+ ..+..-.. ..+.... .+ ..|... |..
T Consensus 304 ~g~VGRnlmdh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~w~~~~ 382 (544)
T TIGR02462 304 LPSLGRYITEQSMTFCQIVLSTELVDSVRSDPRGLDWWKEKV-ANHMMKHPEDPLPIPFRDPEPQVTTPFTEEHPWHTQI 382 (544)
T ss_pred CCCCCcchhcCCCccEEEEecchhhhhccCCccccccccccc-hhhhccccCCcccccccccCcccccccccccccchhh
Confidence 3789999999998876665544321000 00000000 0000000 00 000000 000
Q ss_pred ----------------CCCccceeeEeeecCcCcceEEEecC--CCCCCCCeeecCCCCCHHHHHHHHHHHHHHHHHHcC
Q 009272 364 ----------------PRPYRGGFIFEKIIGPVSTGHLELRT--RNPNDTPSVTFNYFKEPEDLQRCVQGISTIEKIIES 425 (538)
Q Consensus 364 ----------------~~~~~~~~~~~~~~~p~s~g~v~l~~--~d~~~~p~i~~~~~~~~~D~~~~~~~~~~~~~i~~~ 425 (538)
...+.+..+.+.+ |...++|+|++ +|.++.|.+.+.|..++.|++.+..+.+.+.++++.
T Consensus 383 ~~~~~~~g~~~~~~~~~~~v~l~~~~e~l--P~~~NrV~Ld~~~~D~~G~P~~~i~~~~~~~d~~~~~~~~~~~~~i~~~ 460 (544)
T TIGR02462 383 HRDAFSYGAVGPSIDSRVIVDLRFFGRTE--PKEENKLVFQDKVTDTYNMPQPTFDFRFSAADSKRARRMMTDMCNVAAK 460 (544)
T ss_pred hhhhhhcccccccccccceeeEEEEeccC--CCCCCeEEcCCCCcCCCCCeeEEEEEeCCHHHHHHHHHHHHHHHHHHHH
Confidence 0001122344444 66778899964 699999999999999999999999999999999887
Q ss_pred ccccccccccchhHHhhhhccCCCCCCCCCCCCCHHHHHHHHHhccCCcccccccccCC-----CccCCCCcEeccCCce
Q 009272 426 KSFSKFKYDNMSVETLLNMTASMPLNLLPKHSNTSTSLEQFCRDTVMTIWHYHGGCQVG-----KVVDHDYKVLGVDALR 500 (538)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~H~~Gt~~mG-----~VVD~~~rv~g~~nL~ 500 (538)
.+...... .+ .+ ...+.+.|++|||||| +|||+++||||++|||
T Consensus 461 ~G~~~~~~-------------------~~----------~~--~~~~~~~H~~Gt~rMG~dp~~sVvd~~~rv~g~~NL~ 509 (544)
T TIGR02462 461 IGGYLPGS-------------------LP----------QF--MEPGLALHLAGTTRIGFDEQTTVANTDSKVHNFKNLY 509 (544)
T ss_pred cCCCcccc-------------------cc----------cc--cCCCccccCCCCeecCCCCCCceECCCCcEeCCCCeE
Confidence 75421110 00 00 0124578999999999 7999999999999999
Q ss_pred EEecccCCCCCCCchHHHHHHHHHHHHHHHHHh
Q 009272 501 VVDGSTFYYSPGTNPQATVMMLGRYMGVRILSE 533 (538)
Q Consensus 501 V~DaSv~P~~~~~NP~~Ti~ala~r~a~~i~~~ 533 (538)
|+|+|+||+.++.|||+|+||||.|+|++|+++
T Consensus 510 V~d~s~~Pt~~~~nPtlTi~ala~r~a~~i~~~ 542 (544)
T TIGR02462 510 VGGNGNIPTAFGANPTLTSMCYAIKSAEYIINN 542 (544)
T ss_pred EeccCcCCCCCCCCcHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999865
No 7
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=100.00 E-value=7.8e-42 Score=338.97 Aligned_cols=263 Identities=34% Similarity=0.501 Sum_probs=183.4
Q ss_pred ccEEEECCCCchHHHhhhhcC-C-CeEEEEeccCCCCCCCCcccchhhhhhh---cCCCCCCCCccccCCCceeecCccc
Q 009272 47 YDYIVIGGGTAGCPLAASLSQ-N-ASVLLLERGDSPYGNPNITNSGSFSAEL---ADLSPTSPSQRFISEDGVVSTRARV 121 (538)
Q Consensus 47 ~DvIIVGsG~aG~~~A~~La~-g-~~VlvlE~G~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~~ 121 (538)
|||||||||++|+++|.+|++ + .+|||||+|+...... ........... .++.+.+.++....++.+.+.+|++
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 79 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPRYPPED-STPPSSFYQDFDSEYDWGYYSGPQPFLNGRTINWPRGKG 79 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBSCTTSG-HHGGGGGGGCTTTTTBBGEEECEEECTTTTSEEEEEB-S
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEccccCcccc-chhhhccccccCcccccccccccccccccceeeeeccee
Confidence 899999999999999999999 6 7999999999865433 11111111101 1233444556666778888889999
Q ss_pred ccchhhhcccccccCChhhhhc-------CCCChhhhhhhhhhhcccc-------------cc---CCCCchhHHHHHHH
Q 009272 122 LGGGTCINAGFYTRAEPYYARE-------AGWDGRLVNESYQWVEKKV-------------VF---RPPMQRWQSALRDG 178 (538)
Q Consensus 122 lGG~s~~n~~~~~r~~~~~~~~-------~gw~~~~l~~~~~~~e~~~-------------~~---~~~~~~~~~~~~~~ 178 (538)
|||+|.+|++.+.|+.+++++. .+|.++++.+||+++|... .+ .+...+....+.++
T Consensus 80 lGGsS~in~~~~~R~~~~df~~w~~~~g~~~w~~~~l~~~~~~~e~~~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~a 159 (296)
T PF00732_consen 80 LGGSSAINGGVYFRPSPSDFDEWAREFGADGWSWDDLEPYYDKAETFLGPSSDLHGVDGPLPVSSSPPYPSPMNQALMDA 159 (296)
T ss_dssp TTGGGGTS--BE-B--HHHHHHHHHTTTCTTGSHHHHHHHHHHHEEEHTTBGGGSCBSSSEEEHHHCSCHCTHHHHHHHH
T ss_pred cCCcccccccccccCCcccchhhhhcccccccchhhHHHHHHHHHhhccccccccccccccccccccCCCCHHHHHHHHH
Confidence 9999999999999999854432 3588999999999999432 22 12234456788899
Q ss_pred HHHcCCCCCCCCc-cCCCCceeeeeeeeCCCCccccHHH-HHh-hcCCCCeEEEeccEEEEEEecCCCCCCCeEEEEEEE
Q 009272 179 LVEVGVLPYNGFT-YDHLYGTKIGGTIIDQNSQRHTAAD-LLE-YANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFR 255 (538)
Q Consensus 179 ~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~g~r~~~~~-~l~-~~~~~~~~i~~~~~V~~I~~~~~~~~~~~~~gV~~~ 255 (538)
+.++|++...... ...+.-|..+. ..++|.|+++.. ||+ +.++.|++|+++|+|++|+++.++ .+++||++.
T Consensus 160 ~~~~G~~~~~~~~~~~~~g~~~~~~--~~~~g~r~s~~~~~L~~a~~~~n~~l~~~~~V~~i~~~~~~---~~a~gV~~~ 234 (296)
T PF00732_consen 160 AEELGIPVPQDFNGCDPCGFCMTGF--NCPNGARSSAATTYLPPALKRPNLTLLTNARVTRIIFDGDG---GRATGVEYV 234 (296)
T ss_dssp HHHTTHHBCSCTTSSTCSEEEECEE--CECTTCBBHHHHHHHHHHTTTTTEEEEESEEEEEEEEETTS---TEEEEEEEE
T ss_pred HHHcCCccccccccccccccccccc--cccchhceehhhcccchhhccCCccEEcCcEEEEEeeeccc---cceeeeeee
Confidence 9999987221111 11111122221 136788887754 776 556679999999999999886331 399999999
Q ss_pred eCCCC-eEEEEeccCCCceEEEcCCCcCCHHHHHHcCCCChhhhhhCCCceeecCcccCccCccCC
Q 009272 256 DATDA-EHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVGPADHLKAHNITVVLDQPLVGQGMSDNP 320 (538)
Q Consensus 256 ~~~g~-~~~~~~~~~~a~~VVLaaGai~tp~lLl~SGig~~~~l~~~gi~~~~~~p~vG~~l~dh~ 320 (538)
+.++. .+.+. ++|+||||||+|+||+|||+||||+..+|.+.||+++.++| ||+||||||
T Consensus 235 ~~~~~~~~~~~----~ak~VIlaAGai~Tp~LLl~SGiG~~~~L~~~gi~~~~~lp-VG~nl~dH~ 295 (296)
T PF00732_consen 235 DNDGGVQRRIV----AAKEVILAAGAIGTPRLLLRSGIGPKDHLDALGIPVVVDLP-VGRNLQDHP 295 (296)
T ss_dssp ETTTSEEEEEE----EEEEEEE-SHHHHHHHHHHHTTEE-HHHHHHTTHHHSEE-T-TTECEB--E
T ss_pred ecCCcceeeec----cceeEEeccCCCCChhhhcccccccHHHHHHcCCCceeeCc-chhchhccc
Confidence 87776 23333 58999999999999999999999999999999999999999 999999997
No 8
>PF05199 GMC_oxred_C: GMC oxidoreductase; InterPro: IPR007867 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. The function of this C-terminal conserved domain is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0055114 oxidation-reduction process; PDB: 3BG7_F 2IGM_D 3BLY_A 3BG6_H 3LSK_A 2IGO_A 3K4B_A 3K4L_B 2IGN_B 3K4M_H ....
Probab=99.97 E-value=8.8e-32 Score=237.22 Aligned_cols=139 Identities=34% Similarity=0.590 Sum_probs=110.1
Q ss_pred cCcceEEEecCCCCCCCCeeecCCCCCHHHHHHHHHHHHHHHHHHcCccccccccccchhHHhhhhccCCCCCCCCCCCC
Q 009272 379 PVSTGHLELRTRNPNDTPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYDNMSVETLLNMTASMPLNLLPKHSN 458 (538)
Q Consensus 379 p~s~g~v~l~~~d~~~~p~i~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 458 (538)
|.|+|+|+|+++|+++.|.|+++|+.+++|++.+.++++.+.++++.. ++.+......+ .. ... .......
T Consensus 1 P~S~G~V~L~~~d~~~~p~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~------~~-~~~-~~~~~~~ 71 (144)
T PF05199_consen 1 PKSRGRVTLDSSDPFGQPLIDPNYLSDPRDLEALREGIKRARRILRAA-FEEIGAGELLP------GP-SPF-CPDASLD 71 (144)
T ss_dssp -SS-BEEEESSSSTTSEEEEE--TTSSHHHHHHHHHHHHHHHHHHTSG-GGGTEEEEEES------CG-CSC-CGCSTTT
T ss_pred CCCCcEEEeCCCCCCCCcEEEeCCCCCHHHHHHHHHHHHHHHHHHhhh-hcccccccccc------cc-ccc-ccccccc
Confidence 789999999999999999999999999999999999999999999988 65554322100 00 000 0112446
Q ss_pred CHHHHHHHHHhccCCcccccccccCC-----CccCCCCcEeccCCceEEecccCCCCCCCchHHHHHHHHHHH
Q 009272 459 TSTSLEQFCRDTVMTIWHYHGGCQVG-----KVVDHDYKVLGVDALRVVDGSTFYYSPGTNPQATVMMLGRYM 526 (538)
Q Consensus 459 ~~~~~~~~~~~~~~~~~H~~Gt~~mG-----~VVD~~~rv~g~~nL~V~DaSv~P~~~~~NP~~Ti~ala~r~ 526 (538)
+++++++|+++...+.+|++|||+|| +|||++|||||++||||+|+||||+.+++||++|+||||+|+
T Consensus 72 ~~~~~~~~~~~~~~~~~H~~Gt~~mG~~~~~~VvD~~~rv~g~~nL~V~DaSv~P~~~~~np~~t~~ala~ra 144 (144)
T PF05199_consen 72 SDEDLECYIRQNVGTSWHPSGTCRMGPDPDTSVVDPDLRVHGVRNLRVADASVFPTSPGANPTLTIMALAERA 144 (144)
T ss_dssp CHHHHHHHHHHHGEECSS-BETT-BTSSTTTTSB-TTSBBTTSBSEEE-SGGGSSS-SSSSSHHHHHHHHHHH
T ss_pred cchhhhhheeeccceecccccceeccccCCceeECCCCCeeeeeeEEECCCCcCCCCCCcCcHHHHHHHeeCC
Confidence 77899999999999999999999999 999999999999999999999999999999999999999996
No 9
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=99.63 E-value=1.2e-14 Score=154.19 Aligned_cols=228 Identities=16% Similarity=0.165 Sum_probs=121.4
Q ss_pred CCccchhHHHHHHHHHHHHhhcccccccCCC-----------------cccccccccCCCCCCccEEEECCCCchHHHhh
Q 009272 1 MDLRCLRLSFVATLATFLFFHDFCACQKAPN-----------------YSFMRNATAAKPVSYYDYIVIGGGTAGCPLAA 63 (538)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~DvIIVGsG~aG~~~A~ 63 (538)
|.+|.+.+...+.++++++...+|......+ ..+..+ ...++.++||||||+|.+|+++|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~DVvVVG~G~AGl~AAi 78 (506)
T PRK06481 1 MKKKLWTTLGMLLLLALILVGCGSNTTSKSDSSSSKESEKTEVTSGASKTSYTD--PSELKDKYDIVIVGAGGAGMSAAI 78 (506)
T ss_pred CchHHHHHHHHHHHHHHHHHhhcccccccccccccccCCcccccccccccCCCC--CccccccCCEEEECcCHHHHHHHH
Confidence 6777777666665555555544443211110 011111 122346899999999999999999
Q ss_pred hhcC-CCeEEEEeccCCCCCCCCcccchhhhhhhcCCCCCCCCccccCCCceeecCcccccchhhhcccccccCChhhhh
Q 009272 64 SLSQ-NASVLLLERGDSPYGNPNITNSGSFSAELADLSPTSPSQRFISEDGVVSTRARVLGGGTCINAGFYTRAEPYYAR 142 (538)
Q Consensus 64 ~La~-g~~VlvlE~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lGG~s~~n~~~~~r~~~~~~~ 142 (538)
++++ |.+|+||||.+. +||.|....+.+.-....+.+
T Consensus 79 ~Aa~~Ga~VivlEK~~~------------------------------------------~GG~s~~s~Gg~~~~~~~~~~ 116 (506)
T PRK06481 79 EAKDAGMNPVILEKMPV------------------------------------------AGGNTMKASSGMNASETKFQK 116 (506)
T ss_pred HHHHCCCCEEEEECCCC------------------------------------------CCCcccccCCccccCChHHHH
Confidence 9999 999999999975 445444333333222222222
Q ss_pred cCCCChhhhhhhhhhhccccccCCCCchh-------HHHHHHHHHHcCCCCCCCCccCCCCceeeeeeeeCCCCccc---
Q 009272 143 EAGWDGRLVNESYQWVEKKVVFRPPMQRW-------QSALRDGLVEVGVLPYNGFTYDHLYGTKIGGTIIDQNSQRH--- 212 (538)
Q Consensus 143 ~~gw~~~~l~~~~~~~e~~~~~~~~~~~~-------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~r~--- 212 (538)
..+.. +..+.+|+...+....... ..+ .....+++.+.|+..... .. ..+........+.++...
T Consensus 117 ~~g~~-d~~~~~~~~~~~~~~~~~d-~~l~~~~~~~s~~~i~wl~~~Gv~~~~~-~~--~~g~~~~r~~~p~~g~~~g~~ 191 (506)
T PRK06481 117 AQGIA-DSNDKFYEETLKGGGGTND-KALLRYFVDNSASAIDWLDSMGIKLDNL-TI--TGGMSEKRTHRPHDGSAVGGY 191 (506)
T ss_pred hcCCC-CCHHHHHHHHHHhcCCCCC-HHHHHHHHhccHHHHHHHHHcCceEeec-cc--CCCCCCCceeccCCCCCChHH
Confidence 22211 1112223222111000000 011 122345666677642110 00 001000001111122111
Q ss_pred cHHHHHhhcCCCCeEEEeccEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCceEEEcCCCcCCHHHH
Q 009272 213 TAADLLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLL 287 (538)
Q Consensus 213 ~~~~~l~~~~~~~~~i~~~~~V~~I~~~~~~~~~~~~~gV~~~~~~g~~~~~~~~~~~a~~VVLaaGai~tp~lL 287 (538)
....+...+++.|+++++++.|++|+.+++ +++||.+...+++...+ .++.||||+|++....-+
T Consensus 192 l~~~L~~~~~~~gv~i~~~t~v~~l~~~~g-----~V~Gv~~~~~~g~~~~i-----~a~~VVlAtGG~~~n~~m 256 (506)
T PRK06481 192 LVDGLLKNVQERKIPLFVNADVTKITEKDG-----KVTGVKVKINGKETKTI-----SSKAVVVTTGGFGANKDM 256 (506)
T ss_pred HHHHHHHHHHHcCCeEEeCCeeEEEEecCC-----EEEEEEEEeCCCeEEEE-----ecCeEEEeCCCcccCHHH
Confidence 111244455677999999999999987654 89999887555454444 479999999988765433
No 10
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.51 E-value=2.3e-13 Score=145.33 Aligned_cols=62 Identities=13% Similarity=0.205 Sum_probs=47.1
Q ss_pred HHhhcCCCCeEEEeccEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCceEEEcCCCcCCHHHHH
Q 009272 217 LLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLM 288 (538)
Q Consensus 217 ~l~~~~~~~~~i~~~~~V~~I~~~~~~~~~~~~~gV~~~~~~g~~~~~~~~~~~a~~VVLaaGai~tp~lLl 288 (538)
+...+++.|++|+++++|++|+.+++ +|+||.+.+ ++....+. ++|.||||+|+++...-|+
T Consensus 223 L~~~~~~~Gv~i~~~t~v~~Li~~~g-----~V~GV~~~~-~g~~~~i~----a~kaVILAtGGf~~n~em~ 284 (564)
T PRK12845 223 LFAGVLRAGIPIWTETSLVRLTDDGG-----RVTGAVVDH-RGREVTVT----ARRGVVLAAGGFDHDMEMR 284 (564)
T ss_pred HHHHHHHCCCEEEecCEeeEEEecCC-----EEEEEEEEE-CCcEEEEE----cCCEEEEecCCccccHHHH
Confidence 33446678999999999999997644 999998875 45555554 5689999999999765333
No 11
>PRK07121 hypothetical protein; Validated
Probab=99.49 E-value=5.4e-13 Score=141.52 Aligned_cols=64 Identities=14% Similarity=0.275 Sum_probs=48.3
Q ss_pred HHhhcCCCCeEEEeccEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCceEEEcCCCcCCHHHHHH
Q 009272 217 LLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLML 289 (538)
Q Consensus 217 ~l~~~~~~~~~i~~~~~V~~I~~~~~~~~~~~~~gV~~~~~~g~~~~~~~~~~~a~~VVLaaGai~tp~lLl~ 289 (538)
+...+++.|++|+++++|++|+.++++ +++||++.+ +++.+.+. +++.||||+|++....-|++
T Consensus 183 L~~~~~~~gv~i~~~~~v~~l~~~~~g----~v~Gv~~~~-~~~~~~i~----a~k~VVlAtGg~~~N~em~~ 246 (492)
T PRK07121 183 LAKRAAALGVQIRYDTRATRLIVDDDG----RVVGVEARR-YGETVAIR----ARKGVVLAAGGFAMNREMVA 246 (492)
T ss_pred HHHHHHhCCCEEEeCCEEEEEEECCCC----CEEEEEEEe-CCcEEEEE----eCCEEEECCCCcCcCHHHHH
Confidence 445667789999999999999987654 899999864 45555553 33999999999886444443
No 12
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.48 E-value=4.9e-13 Score=143.73 Aligned_cols=61 Identities=11% Similarity=0.193 Sum_probs=47.2
Q ss_pred hhcCCCCeEEEeccEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCceEEEcCCCcCCHHHHH
Q 009272 219 EYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLM 288 (538)
Q Consensus 219 ~~~~~~~~~i~~~~~V~~I~~~~~~~~~~~~~gV~~~~~~g~~~~~~~~~~~a~~VVLaaGai~tp~lLl 288 (538)
..+++.|++|+++++|++|+.++++ +|+||.+.. +++.+++. +++.||||+|+++...-|+
T Consensus 221 ~~~~~~gv~i~~~~~~~~Li~d~~g----~V~Gv~~~~-~~~~~~i~----a~~aVilAtGGf~~N~em~ 281 (584)
T PRK12835 221 LALKDAGVPLWLDSPMTELITDPDG----AVVGAVVER-EGRTLRIG----ARRGVILATGGFDHDMDWR 281 (584)
T ss_pred HHHHhCCceEEeCCEEEEEEECCCC----cEEEEEEEe-CCcEEEEE----eceeEEEecCcccCCHHHH
Confidence 3566789999999999999998654 999998864 56665554 3457999999999644333
No 13
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=99.48 E-value=4e-13 Score=141.82 Aligned_cols=194 Identities=19% Similarity=0.176 Sum_probs=106.6
Q ss_pred CCCccEEEECCCCchHHHhhhhcC-CCeEEEEeccCCCCCCCCcccchhhhhhhcCCCCCCCCccccCCCceeecCcccc
Q 009272 44 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSPYGNPNITNSGSFSAELADLSPTSPSQRFISEDGVVSTRARVL 122 (538)
Q Consensus 44 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l 122 (538)
..++||||||+|.+|+++|++|++ |.+|+||||++... .
T Consensus 2 ~~~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~~~~----------------------------------------~ 41 (466)
T PRK08274 2 ASMVDVLVIGGGNAALCAALAAREAGASVLLLEAAPREW----------------------------------------R 41 (466)
T ss_pred CccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcC----------------------------------------C
Confidence 457999999999999999999999 99999999997411 3
Q ss_pred cchhhhcccccccCCh-hhhhcCCCChhhhhhhhhhhccccccCCCCc---hh---HHHHHHHHHHcCCCCCCCCccCCC
Q 009272 123 GGGTCINAGFYTRAEP-YYAREAGWDGRLVNESYQWVEKKVVFRPPMQ---RW---QSALRDGLVEVGVLPYNGFTYDHL 195 (538)
Q Consensus 123 GG~s~~n~~~~~r~~~-~~~~~~gw~~~~l~~~~~~~e~~~~~~~~~~---~~---~~~~~~~~~~~g~~~~~~~~~~~~ 195 (538)
||+|.+.++....... .......++.+ .+++...+......... .+ .....+++.+.|+....... ..
T Consensus 42 GG~s~~s~G~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~wl~~~Gv~~~~~~~--~~ 116 (466)
T PRK08274 42 GGNSRHTRNLRCMHDAPQDVLVGAYPEE---EFWQDLLRVTGGRTDEALARLLIRESSDCRDWMRKHGVRFQPPLS--GA 116 (466)
T ss_pred CcccccCCceeeeCCCchhhccccccHH---HHHHHHHHhhCCCCCHHHHHHHHHcCHHHHHHHHhCCceEeecCC--Cc
Confidence 4544444432111110 00000011111 12222221111111100 00 12234556666764211000 00
Q ss_pred CceeeeeeeeCCCCccccHHHHHhhcCCCCeEEEeccEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCceEE
Q 009272 196 YGTKIGGTIIDQNSQRHTAADLLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEII 275 (538)
Q Consensus 196 ~~~~~~~~~~~~~g~r~~~~~~l~~~~~~~~~i~~~~~V~~I~~~~~~~~~~~~~gV~~~~~~g~~~~~~~~~~~a~~VV 275 (538)
.........+ ..+.+.....+...+++.|++++++++|++|+.+++ +++||.+.+.+++...+ .++.||
T Consensus 117 ~~~~~~~~~~-~g~g~~l~~~l~~~~~~~gv~i~~~t~v~~l~~~~g-----~v~gv~~~~~~g~~~~i-----~a~~VI 185 (466)
T PRK08274 117 LHVARTNAFF-WGGGKALVNALYRSAERLGVEIRYDAPVTALELDDG-----RFVGARAGSAAGGAERI-----RAKAVV 185 (466)
T ss_pred cccCCCCeee-cCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCC-----eEEEEEEEccCCceEEE-----ECCEEE
Confidence 0000000011 111111112244556678999999999999998755 89999886445655554 479999
Q ss_pred EcCCCcCCHHHHHHcCCC
Q 009272 276 VSAGALGSPQLLMLSGVG 293 (538)
Q Consensus 276 LaaGai~tp~lLl~SGig 293 (538)
||+|++...+.++..-++
T Consensus 186 lAtGg~~~n~~~~~~~~~ 203 (466)
T PRK08274 186 LAAGGFESNREWLREAWG 203 (466)
T ss_pred ECCCCCCCCHHHHHhhcC
Confidence 999999988877776444
No 14
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=99.47 E-value=1e-12 Score=141.99 Aligned_cols=59 Identities=15% Similarity=0.255 Sum_probs=46.1
Q ss_pred HHhhcCCCCeEEEeccEEEEEEecCCCCCCCeEEEEEEEeC-CCCeEEEEeccCCCceEEEcCCCcCCH
Q 009272 217 LLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDA-TDAEHIAYLRNGPKNEIIVSAGALGSP 284 (538)
Q Consensus 217 ~l~~~~~~~~~i~~~~~V~~I~~~~~~~~~~~~~gV~~~~~-~g~~~~~~~~~~~a~~VVLaaGai~tp 284 (538)
+...+.+.|++|+.++.+++|+.++++ ++.||.+.+. +|+.+.+ .+|.||||+|+++..
T Consensus 193 L~~~a~~~gv~i~~~~~~~~Li~~~~g----~v~Gv~~~~~~~g~~~~i-----~AkaVILATGG~g~~ 252 (635)
T PLN00128 193 LYGQAMKHNTQFFVEYFALDLIMDSDG----ACQGVIALNMEDGTLHRF-----RAHSTILATGGYGRA 252 (635)
T ss_pred HHHHHHhCCCEEEEeeEEEEEEEcCCC----EEEEEEEEEcCCCeEEEE-----EcCeEEECCCCCccc
Confidence 444455679999999999999987443 9999988763 5665555 589999999998753
No 15
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.47 E-value=5.2e-13 Score=130.52 Aligned_cols=190 Identities=18% Similarity=0.249 Sum_probs=116.5
Q ss_pred CCccEEEECCCCchHHHhhhhcC-CCeEEEEeccCCCCCCCCcccchhhhhhhcCCCCCCCCccccCCCceeecCccccc
Q 009272 45 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSPYGNPNITNSGSFSAELADLSPTSPSQRFISEDGVVSTRARVLG 123 (538)
Q Consensus 45 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lG 123 (538)
+.+||||||+|++|+++|..+++ |.+|+|+|+++....+-. +-
T Consensus 2 ~~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil------------------------------------~s 45 (408)
T COG2081 2 ERFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKIL------------------------------------MS 45 (408)
T ss_pred CcceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeE------------------------------------ec
Confidence 46999999999999999999999 999999999997543221 22
Q ss_pred chhhhcccccccCChhhhhcCCCChhhhhhhhhhhccccccCCCCchhHHHHHHHHHHcCCCCCCCCccCCCCceeeeee
Q 009272 124 GGTCINAGFYTRAEPYYAREAGWDGRLVNESYQWVEKKVVFRPPMQRWQSALRDGLVEVGVLPYNGFTYDHLYGTKIGGT 203 (538)
Q Consensus 124 G~s~~n~~~~~r~~~~~~~~~gw~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 203 (538)
|++.+|-..... .+++....+=.-..+.+.+.+. -.+.+++.++.+|+..+.. ..+.
T Consensus 46 GgGrCN~Tn~~~-~~~~ls~~p~~~~fl~sal~~f------------t~~d~i~~~e~~Gi~~~e~----------~~Gr 102 (408)
T COG2081 46 GGGRCNFTNSEA-PDEFLSRNPGNGHFLKSALARF------------TPEDFIDWVEGLGIALKEE----------DLGR 102 (408)
T ss_pred CCCCcccccccc-HHHHHHhCCCcchHHHHHHHhC------------CHHHHHHHHHhcCCeeEEc----------cCce
Confidence 444444443322 2222211100001111111111 1356888889999863211 1123
Q ss_pred eeCC-CCccccHHHHHhhcCCCCeEEEeccEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCceEEEcCCCcC
Q 009272 204 IIDQ-NSQRHTAADLLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALG 282 (538)
Q Consensus 204 ~~~~-~g~r~~~~~~l~~~~~~~~~i~~~~~V~~I~~~~~~~~~~~~~gV~~~~~~g~~~~~~~~~~~a~~VVLaaGai~ 282 (538)
.++. +........++..+++.|++|+++++|..|..++. +..+..++|+ ++ .++.+|||+|+..
T Consensus 103 ~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~--------~f~l~t~~g~--~i-----~~d~lilAtGG~S 167 (408)
T COG2081 103 MFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDS--------GFRLDTSSGE--TV-----KCDSLILATGGKS 167 (408)
T ss_pred ecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCc--------eEEEEcCCCC--EE-----EccEEEEecCCcC
Confidence 3333 33333333466678889999999999999998874 4445545675 23 4799999999988
Q ss_pred CHHHHHHcCCCChhhhhhCCCceeecCc
Q 009272 283 SPQLLMLSGVGPADHLKAHNITVVLDQP 310 (538)
Q Consensus 283 tp~lLl~SGig~~~~l~~~gi~~~~~~p 310 (538)
-|++- ..|.| ....+++|+++....|
T Consensus 168 ~P~lG-stg~g-y~iA~~~G~~I~~~rp 193 (408)
T COG2081 168 WPKLG-STGFG-YPIARQFGHTITPLRP 193 (408)
T ss_pred CCCCC-CCchh-hHHHHHcCCccccCcc
Confidence 88741 22333 3456677776554444
No 16
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.45 E-value=1.4e-12 Score=139.62 Aligned_cols=62 Identities=16% Similarity=0.341 Sum_probs=48.0
Q ss_pred HHhhcCCCCeEEEeccEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCceEEEcCCCcCCHHHHH
Q 009272 217 LLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLM 288 (538)
Q Consensus 217 ~l~~~~~~~~~i~~~~~V~~I~~~~~~~~~~~~~gV~~~~~~g~~~~~~~~~~~a~~VVLaaGai~tp~lLl 288 (538)
+...+++.|++|+++++|++|+.+++ +|+||++.. +|+.+.+. +++.||||+|++....=|+
T Consensus 214 l~~~~~~~gv~i~~~~~v~~Li~~~g-----~v~Gv~~~~-~g~~~~i~----A~~aVIlAtGG~~~N~em~ 275 (557)
T PRK12844 214 MLEAALAAGVPLWTNTPLTELIVEDG-----RVVGVVVVR-DGREVLIR----ARRGVLLASGGFGHNAEMR 275 (557)
T ss_pred HHHHHHhCCCEEEeCCEEEEEEEeCC-----EEEEEEEEE-CCeEEEEE----ecceEEEecCCccCCHHHH
Confidence 33456778999999999999998765 999999874 56655554 4468999999998854443
No 17
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=99.44 E-value=5.8e-13 Score=138.71 Aligned_cols=182 Identities=24% Similarity=0.287 Sum_probs=95.9
Q ss_pred cEEEECCCCchHHHhhhhcC-CCeEEEEeccCCCCCCCCcccchhhhhhhcCCCCCCCCccccCCCceeecCcccccchh
Q 009272 48 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSPYGNPNITNSGSFSAELADLSPTSPSQRFISEDGVVSTRARVLGGGT 126 (538)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lGG~s 126 (538)
||||||+|.+|+++|++|++ |.+|+||||++. +||++
T Consensus 1 DVvVIG~G~AGl~AA~~Aae~G~~V~lvek~~~------------------------------------------~gg~~ 38 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAEAGAKVLLVEKGPR------------------------------------------LGGSS 38 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHHTTT-EEEEESSSG------------------------------------------GGSGG
T ss_pred CEEEECCCHHHHHHHHHHhhhcCeEEEEEeecc------------------------------------------ccccc
Confidence 89999999999999999999 999999999985 55655
Q ss_pred hhcccccccCChhhhhcCCCChhhhhhhhhhhccccccCCCCchh-------HHHHHHHHHHcCCCCCC----CCccCCC
Q 009272 127 CINAGFYTRAEPYYAREAGWDGRLVNESYQWVEKKVVFRPPMQRW-------QSALRDGLVEVGVLPYN----GFTYDHL 195 (538)
Q Consensus 127 ~~n~~~~~r~~~~~~~~~gw~~~~l~~~~~~~e~~~~~~~~~~~~-------~~~~~~~~~~~g~~~~~----~~~~~~~ 195 (538)
...++.+.-......+..+- .+..+.++....+...... ..++ .....+++.+.|+.... .+.....
T Consensus 39 ~~s~g~~~~~~~~~~~~~~~-~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~g~~~~~~~ 116 (417)
T PF00890_consen 39 AFSSGGFDAAGTPPQREAGI-EDSPEEFFQDIMAAGGGLN-DPDLVRAFVENSPEAIDWLEELGVPFRRDEDGPFAPTPF 116 (417)
T ss_dssp GGTCSEEEESSSHSSHHTTT-TCHHHHHHHHHHHHTTT-S--HHHHHHHHHHHHHHHHHHHHTT--B-BGTTSSBCEEEE
T ss_pred ccccCceeeecccccccccc-cccccccceeeeccccccc-ccchhhhhhhcccceehhhhhhccccccccccccccccc
Confidence 55544443333211111110 0112222222222221111 1111 22345566777765322 0000001
Q ss_pred Cceeee-eeee-CCCC------c-cccHHHHHhhcCCCCeEEEeccEEEEEEecCCCCCCCeEEEEEEEe-CCCCeEEEE
Q 009272 196 YGTKIG-GTII-DQNS------Q-RHTAADLLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRD-ATDAEHIAY 265 (538)
Q Consensus 196 ~~~~~~-~~~~-~~~g------~-r~~~~~~l~~~~~~~~~i~~~~~V~~I~~~~~~~~~~~~~gV~~~~-~~g~~~~~~ 265 (538)
...... .... ..+. . ......+...+++.+++|+.+++|++|+.+++ +|+||++.+ .+|+.+++.
T Consensus 117 g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e~g-----~V~Gv~~~~~~~g~~~~i~ 191 (417)
T PF00890_consen 117 GGHSPRWRSPPGNPDPPFGGLGGGKALIEALAKAAEEAGVDIRFNTRVTDLITEDG-----RVTGVVAENPADGEFVRIK 191 (417)
T ss_dssp TTESSTEEEEESSTTSSSHCCCHHHHHHHHHHHHHHHTTEEEEESEEEEEEEEETT-----EEEEEEEEETTTCEEEEEE
T ss_pred CCccccceeeeccccccccccccHHHHHHHHHHHHhhcCeeeeccceeeeEEEeCC-----ceeEEEEEECCCCeEEEEe
Confidence 111001 0111 1111 0 00111134456667899999999999999876 999999985 356666664
Q ss_pred eccCCCceEEEcCCCcCC
Q 009272 266 LRNGPKNEIIVSAGALGS 283 (538)
Q Consensus 266 ~~~~~a~~VVLaaGai~t 283 (538)
++.||||+|++..
T Consensus 192 -----A~aVIlAtGG~~~ 204 (417)
T PF00890_consen 192 -----AKAVILATGGFGG 204 (417)
T ss_dssp -----ESEEEE----BGG
T ss_pred -----eeEEEeccCcccc
Confidence 6799999999998
No 18
>PRK06175 L-aspartate oxidase; Provisional
Probab=99.43 E-value=2.3e-12 Score=133.94 Aligned_cols=56 Identities=14% Similarity=0.271 Sum_probs=42.5
Q ss_pred HHhhc-CCCCeEEEeccEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCceEEEcCCCcCC
Q 009272 217 LLEYA-NPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGS 283 (538)
Q Consensus 217 ~l~~~-~~~~~~i~~~~~V~~I~~~~~~~~~~~~~gV~~~~~~g~~~~~~~~~~~a~~VVLaaGai~t 283 (538)
++..+ ++.|++|++++.|++|+.+++ +++||.+.+ ++..+.+ .++.||||+|+++.
T Consensus 134 L~~~~~~~~gV~i~~~t~v~~Li~~~~-----~v~Gv~~~~-~g~~~~i-----~Ak~VILAtGG~~~ 190 (433)
T PRK06175 134 LLKKVKKRKNITIIENCYLVDIIENDN-----TCIGAICLK-DNKQINI-----YSKVTILATGGIGG 190 (433)
T ss_pred HHHHHHhcCCCEEEECcEeeeeEecCC-----EEEEEEEEE-CCcEEEE-----EcCeEEEccCcccc
Confidence 44434 456999999999999998765 899987764 4544444 47999999999764
No 19
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=99.42 E-value=3.4e-12 Score=135.73 Aligned_cols=55 Identities=11% Similarity=0.219 Sum_probs=43.2
Q ss_pred cCCCCeEEEeccEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCceEEEcCCCcCCHH
Q 009272 221 ANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQ 285 (538)
Q Consensus 221 ~~~~~~~i~~~~~V~~I~~~~~~~~~~~~~gV~~~~~~g~~~~~~~~~~~a~~VVLaaGai~tp~ 285 (538)
.++.|++|+++++|++|+.+++ +|+||++.. +++.+++. +++.||||||+++...
T Consensus 184 ~~~~gv~i~~~t~~~~Li~~~g-----~v~Gv~~~~-~g~~~~i~----A~k~VIlAtGG~~~n~ 238 (513)
T PRK12837 184 ARFPNARLRLNTPLVELVVEDG-----RVVGAVVER-GGERRRVR----ARRGVLLAAGGFEQND 238 (513)
T ss_pred HhCCCCEEEeCCEEEEEEecCC-----EEEEEEEEE-CCcEEEEE----eCceEEEeCCCccCCH
Confidence 3446999999999999998755 999998864 56655554 4468999999997543
No 20
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.41 E-value=2.8e-12 Score=139.09 Aligned_cols=55 Identities=27% Similarity=0.285 Sum_probs=45.0
Q ss_pred ccccCCCcccccccccCC-----CCCCccEEEECCCCchHHHhhhhcC-CCeEEEEeccCC
Q 009272 25 ACQKAPNYSFMRNATAAK-----PVSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 79 (538)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~-----~~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (538)
.+..+.+.+|.+.++++. ...++||||||||.+|+++|.+|++ |.+|+|||+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~ 69 (640)
T PRK07573 9 IPEGPIEEKWDRYKFHLKLVNPANKRKFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDS 69 (640)
T ss_pred CCCCcchhhhhhccccccccCCccccccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCC
Confidence 455666778888777653 2347899999999999999999999 999999998654
No 21
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=99.40 E-value=5e-12 Score=135.70 Aligned_cols=36 Identities=39% Similarity=0.526 Sum_probs=33.7
Q ss_pred CCCccEEEECCCCchHHHhhhhcC-CCeEEEEeccCC
Q 009272 44 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 79 (538)
Q Consensus 44 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (538)
..++||||||+|.+|+++|..+++ |.+|+||||++.
T Consensus 2 ~~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~~ 38 (549)
T PRK12834 2 AMDADVIVVGAGLAGLVAAAELADAGKRVLLLDQENE 38 (549)
T ss_pred CccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 467999999999999999999999 999999999983
No 22
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=99.39 E-value=3.7e-12 Score=133.42 Aligned_cols=62 Identities=21% Similarity=0.422 Sum_probs=47.3
Q ss_pred HHhhcCCCCeEEEeccEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCceEEEcCCCcCCHHHH
Q 009272 217 LLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLL 287 (538)
Q Consensus 217 ~l~~~~~~~~~i~~~~~V~~I~~~~~~~~~~~~~gV~~~~~~g~~~~~~~~~~~a~~VVLaaGai~tp~lL 287 (538)
+...+++.|++|+++++|++|+.++++ +++||++.+.+++.+.+ +++.||||+|++....-+
T Consensus 136 l~~~~~~~gv~i~~~~~v~~l~~~~~g----~v~Gv~~~~~~g~~~~~-----~a~~VVlAtGg~~~n~~m 197 (439)
T TIGR01813 136 LYKKAKKEGIDTRLNSKVEDLIQDDQG----TVVGVVVKGKGKGIYIK-----AAKAVVLATGGFGSNKEM 197 (439)
T ss_pred HHHHHHHcCCEEEeCCEeeEeEECCCC----cEEEEEEEeCCCeEEEE-----ecceEEEecCCCCCCHHH
Confidence 444566789999999999999997654 89999988655543333 579999999998764333
No 23
>PRK12839 hypothetical protein; Provisional
Probab=99.37 E-value=5.1e-12 Score=135.44 Aligned_cols=62 Identities=16% Similarity=0.230 Sum_probs=47.7
Q ss_pred HHhhcCCCCeEEEeccEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCceEEEcCCCcCCHHHH
Q 009272 217 LLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLL 287 (538)
Q Consensus 217 ~l~~~~~~~~~i~~~~~V~~I~~~~~~~~~~~~~gV~~~~~~g~~~~~~~~~~~a~~VVLaaGai~tp~lL 287 (538)
++..+.+.|++|+.++.|++|+.++++ +|+||.+.+.++. .++. +++.||||+|++....-+
T Consensus 220 L~~~a~~~Gv~i~~~t~v~~Li~~~~g----~V~GV~~~~~~g~-~~i~----aak~VVLAtGGf~~n~~~ 281 (572)
T PRK12839 220 LLRSADDLGVDLRVSTSATSLTTDKNG----RVTGVRVQGPDGA-VTVE----ATRGVVLATGGFPNDVDR 281 (572)
T ss_pred HHHHHHHCCCEEEcCCEEEEEEECCCC----cEEEEEEEeCCCc-EEEE----eCCEEEEcCCCcccCHHH
Confidence 444566789999999999999987554 9999998765554 3333 579999999999874433
No 24
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.37 E-value=8.9e-13 Score=134.57 Aligned_cols=190 Identities=22% Similarity=0.284 Sum_probs=93.2
Q ss_pred ccEEEECCCCchHHHhhhhcC-CCeEEEEeccCCCCCCCCcccchhhhhhhcCCCCCCCCccccCCCceeecCcccccch
Q 009272 47 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSPYGNPNITNSGSFSAELADLSPTSPSQRFISEDGVVSTRARVLGGG 125 (538)
Q Consensus 47 ~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lGG~ 125 (538)
|||||||+|++|+++|+.|++ |.+|+|+||++....+-. +-|.
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil------------------------------------~tG~ 44 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKIL------------------------------------ITGN 44 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHH------------------------------------HCGG
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCccccccee------------------------------------ecCC
Confidence 899999999999999999999 999999999986421100 1143
Q ss_pred hhhcccccccCChhhhhcCCCChhhhhhhhhhhccccccCCCCchhHHHHHHHHHHcCCCCCCCCccCCCCceeeeeeee
Q 009272 126 TCINAGFYTRAEPYYAREAGWDGRLVNESYQWVEKKVVFRPPMQRWQSALRDGLVEVGVLPYNGFTYDHLYGTKIGGTII 205 (538)
Q Consensus 126 s~~n~~~~~r~~~~~~~~~gw~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 205 (538)
+.+|-........++....+-..+.+.+.+... ..+.+.+.+.+.|+.... ...+.++
T Consensus 45 GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f------------~~~d~~~ff~~~Gv~~~~----------~~~gr~f 102 (409)
T PF03486_consen 45 GRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRF------------SPEDLIAFFEELGVPTKI----------EEDGRVF 102 (409)
T ss_dssp GT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-------------HHHHHHHHHHTT--EEE-----------STTEEE
T ss_pred CCccccccccchhhHhhhcccchHHHHHHHhcC------------CHHHHHHHHHhcCCeEEE----------cCCCEEC
Confidence 444433311111111110000001111111110 134567788888875210 0112344
Q ss_pred CCCCccccHHH-HHhhcCCCCeEEEeccEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCceEEEcCCCcCCH
Q 009272 206 DQNSQRHTAAD-LLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSP 284 (538)
Q Consensus 206 ~~~g~r~~~~~-~l~~~~~~~~~i~~~~~V~~I~~~~~~~~~~~~~gV~~~~~~g~~~~~~~~~~~a~~VVLaaGai~tp 284 (538)
+......+... ++..+++.|++|+++++|+.|..+++ .+..|.+. +++. + .++.||||+|+..-|
T Consensus 103 P~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~-----~~f~v~~~--~~~~--~-----~a~~vILAtGG~S~p 168 (409)
T PF03486_consen 103 PKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKED-----GVFGVKTK--NGGE--Y-----EADAVILATGGKSYP 168 (409)
T ss_dssp ETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETT-----EEEEEEET--TTEE--E-----EESEEEE----SSSG
T ss_pred CCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCC-----ceeEeecc--Cccc--c-----cCCEEEEecCCCCcc
Confidence 43333333333 55567788999999999999999887 67777762 3332 2 369999999998888
Q ss_pred HHHHHcCCCChhhhhhCCCceeecCc
Q 009272 285 QLLMLSGVGPADHLKAHNITVVLDQP 310 (538)
Q Consensus 285 ~lLl~SGig~~~~l~~~gi~~~~~~p 310 (538)
.+ =-+|-| ...++++|+++....|
T Consensus 169 ~~-GS~G~g-y~~a~~lGh~i~~~~P 192 (409)
T PF03486_consen 169 KT-GSDGSG-YRIAKKLGHTITPPYP 192 (409)
T ss_dssp GG-T-SSHH-HHHHHHTT--EEEEEE
T ss_pred cc-CCCcHH-HHHHHHCCCcEecCCC
Confidence 74 111211 2346677877666555
No 25
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.34 E-value=1.6e-11 Score=131.62 Aligned_cols=58 Identities=19% Similarity=0.302 Sum_probs=46.0
Q ss_pred HHhhcCCCCeEEEeccEEEEEEecCCCCCCCeEEEEEEEe-CCCCeEEEEeccCCCceEEEcCCCcCC
Q 009272 217 LLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRD-ATDAEHIAYLRNGPKNEIIVSAGALGS 283 (538)
Q Consensus 217 ~l~~~~~~~~~i~~~~~V~~I~~~~~~~~~~~~~gV~~~~-~~g~~~~~~~~~~~a~~VVLaaGai~t 283 (538)
+...+.+.|++|++++.|++|+.++++ +++||.+.+ .+|+.+.+ .++.||||+|++..
T Consensus 140 L~~~~~~~gv~i~~~t~v~~Li~~~~~----~v~Gv~~~~~~~g~~~~i-----~AkaVIlATGG~~~ 198 (543)
T PRK06263 140 LMEYLIKERIKILEEVMAIKLIVDENR----EVIGAIFLDLRNGEIFPI-----YAKATILATGGAGQ 198 (543)
T ss_pred HHHHHhcCCCEEEeCeEeeeeEEeCCc----EEEEEEEEECCCCcEEEE-----EcCcEEECCCCCCC
Confidence 444556689999999999999987663 699998876 56665555 47999999999874
No 26
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.34 E-value=2e-11 Score=131.10 Aligned_cols=56 Identities=16% Similarity=0.210 Sum_probs=44.3
Q ss_pred HHhhcCCCCeEEEeccEEEEEEecCCCCCCCeEEEEEEEeC-CCCeEEEEeccCCCceEEEcCCCcC
Q 009272 217 LLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDA-TDAEHIAYLRNGPKNEIIVSAGALG 282 (538)
Q Consensus 217 ~l~~~~~~~~~i~~~~~V~~I~~~~~~~~~~~~~gV~~~~~-~g~~~~~~~~~~~a~~VVLaaGai~ 282 (538)
+...+.+.|++++.++.|++|+.+++ +|+||.+.+. +++.+.+ .++.||||+|+++
T Consensus 142 L~~~~~~~gv~i~~~~~~~~Li~~~g-----~v~Gv~~~~~~~g~~~~i-----~AkaVVLATGG~~ 198 (566)
T PRK06452 142 LFERTSGLNVDFYNEWFSLDLVTDNK-----KVVGIVAMQMKTLTPFFF-----KTKAVVLATGGMG 198 (566)
T ss_pred HHHHHHhCCCEEEeCcEEEEEEEECC-----EEEEEEEEECCCCeEEEE-----EeCeEEECCCccc
Confidence 44445556999999999999999765 9999998864 3444444 5799999999987
No 27
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=99.33 E-value=1.9e-11 Score=141.04 Aligned_cols=58 Identities=14% Similarity=0.271 Sum_probs=44.9
Q ss_pred CCCeEEEeccEEEEEEecCCC----CCCCeEEEEEEEeC---CCCeEEEEeccCCCceEEEcCCCcCCHH
Q 009272 223 PSGLTVLLHASVHKILFRNKG----KARPVAHGVVFRDA---TDAEHIAYLRNGPKNEIIVSAGALGSPQ 285 (538)
Q Consensus 223 ~~~~~i~~~~~V~~I~~~~~~----~~~~~~~gV~~~~~---~g~~~~~~~~~~~a~~VVLaaGai~tp~ 285 (538)
+.|++|+++++|++|+.++++ ....+|+||++.+. +|+.+.+ .+|.||||+|+++...
T Consensus 559 ~~gv~i~~~t~~~~LI~d~~~~~~G~~~~~V~Gv~~~~~~~~~g~~~~i-----~AkaVILATGGf~~N~ 623 (1167)
T PTZ00306 559 SGRVTIMTETTVTSLLSESSARPDGVREIRVTGVRYKQASDASGQVMDL-----LADAVILATGGFSNDH 623 (1167)
T ss_pred cCCcEEEECCEEEEEEecCCcccCCCccceEEEEEEEecccCCCcEEEE-----EeceEEEecCCcccCc
Confidence 369999999999999987521 11138999999875 6765555 4799999999999754
No 28
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.32 E-value=3.1e-11 Score=129.50 Aligned_cols=63 Identities=13% Similarity=0.257 Sum_probs=48.2
Q ss_pred HhhcCCCCeEEEeccEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCceEEEcCCCcCCHHHHHHc
Q 009272 218 LEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLS 290 (538)
Q Consensus 218 l~~~~~~~~~i~~~~~V~~I~~~~~~~~~~~~~gV~~~~~~g~~~~~~~~~~~a~~VVLaaGai~tp~lLl~S 290 (538)
...+++.|++|+++++|++|+.+++ +|+||++.. +++.+.+. +++.||||+|++....-|+..
T Consensus 215 ~~~~~~~gv~v~~~t~v~~l~~~~g-----~v~Gv~~~~-~g~~~~i~----A~~~VIlAtGG~~~n~~m~~~ 277 (557)
T PRK07843 215 RIGLQRAGVPVLLNTPLTDLYVEDG-----RVTGVHAAE-SGEPQLIR----ARRGVILASGGFEHNEQMRAK 277 (557)
T ss_pred HHHHHcCCCEEEeCCEEEEEEEeCC-----EEEEEEEEe-CCcEEEEE----eceeEEEccCCcCcCHHHHHH
Confidence 3455678999999999999998755 999998864 56555554 345799999999986655543
No 29
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.32 E-value=2.9e-11 Score=130.19 Aligned_cols=58 Identities=12% Similarity=0.100 Sum_probs=45.8
Q ss_pred HHhhcCCCCeEEEeccEEEEEEecCCCCCCCeEEEEEEEe-CCCCeEEEEeccCCCceEEEcCCCcCC
Q 009272 217 LLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRD-ATDAEHIAYLRNGPKNEIIVSAGALGS 283 (538)
Q Consensus 217 ~l~~~~~~~~~i~~~~~V~~I~~~~~~~~~~~~~gV~~~~-~~g~~~~~~~~~~~a~~VVLaaGai~t 283 (538)
++..+.+.|++++.++.|++|+.++++ +|+||.+.+ .+|+.+.+ .++.||||+|+++.
T Consensus 149 L~~~~~~~gi~i~~~~~~~~Li~~~~g----~v~Gv~~~~~~~g~~~~i-----~AkaVILATGG~~~ 207 (588)
T PRK08958 149 LYQQNLKNHTTIFSEWYALDLVKNQDG----AVVGCTAICIETGEVVYF-----KARATVLATGGAGR 207 (588)
T ss_pred HHHHhhhcCCEEEeCcEEEEEEECCCC----EEEEEEEEEcCCCcEEEE-----EcCeEEECCCCccc
Confidence 444556789999999999999987544 999999864 35665555 47999999999875
No 30
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.32 E-value=2.6e-11 Score=130.92 Aligned_cols=58 Identities=16% Similarity=0.290 Sum_probs=46.1
Q ss_pred HHhhcCCCCeEEEeccEEEEEEecCCCCCCCeEEEEEEEe-CCCCeEEEEeccCCCceEEEcCCCcCC
Q 009272 217 LLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRD-ATDAEHIAYLRNGPKNEIIVSAGALGS 283 (538)
Q Consensus 217 ~l~~~~~~~~~i~~~~~V~~I~~~~~~~~~~~~~gV~~~~-~~g~~~~~~~~~~~a~~VVLaaGai~t 283 (538)
++..+.+.|+++++++.|++|+.++++ +|+||.+.+ .+|+.+.+ .++.||||+|+++.
T Consensus 155 L~~~~~~~gi~i~~~~~v~~Li~~~~g----~v~Gv~~~~~~~g~~~~i-----~AkaVVLATGG~~~ 213 (598)
T PRK09078 155 LYQQSLKHNAEFFIEYFALDLIMDDGG----VCRGVVAWNLDDGTLHRF-----RAHMVVLATGGYGR 213 (598)
T ss_pred HHHHHhhcCCEEEEeEEEEEEEEcCCC----EEEEEEEEECCCCcEEEE-----EcCEEEECCCCCcc
Confidence 444566689999999999999987644 999998865 35665555 47999999999886
No 31
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=99.32 E-value=3e-11 Score=130.26 Aligned_cols=62 Identities=16% Similarity=0.232 Sum_probs=46.8
Q ss_pred HHhhcCCCCeEEEeccEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCceEEEcCCCcCCHHHHH
Q 009272 217 LLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLM 288 (538)
Q Consensus 217 ~l~~~~~~~~~i~~~~~V~~I~~~~~~~~~~~~~gV~~~~~~g~~~~~~~~~~~a~~VVLaaGai~tp~lLl 288 (538)
+...+++.|++|+++++|++|+.+++ +++||.+.+. +..+.+. +++.||||+|++....-++
T Consensus 223 L~~~a~~~Gv~i~~~t~v~~l~~~~g-----~v~GV~~~~~-~~~~~i~----a~k~VVlAtGg~~~n~~~~ 284 (581)
T PRK06134 223 LLKSAEDLGVRIWESAPARELLREDG-----RVAGAVVETP-GGLQEIR----ARKGVVLAAGGFPHDPARR 284 (581)
T ss_pred HHHHHHhCCCEEEcCCEEEEEEEeCC-----EEEEEEEEEC-CcEEEEE----eCCEEEEcCCCcccCHHHH
Confidence 44456778999999999999998755 9999988753 3334443 3389999999988755443
No 32
>PLN02815 L-aspartate oxidase
Probab=99.32 E-value=1.7e-11 Score=131.45 Aligned_cols=61 Identities=25% Similarity=0.299 Sum_probs=43.6
Q ss_pred HHhhc-CCCCeEEEeccEEEEEEecCCCCCCCeEEEEEEEeC-CCCeEEEEeccCCCceEEEcCCCcCC
Q 009272 217 LLEYA-NPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDA-TDAEHIAYLRNGPKNEIIVSAGALGS 283 (538)
Q Consensus 217 ~l~~~-~~~~~~i~~~~~V~~I~~~~~~~~~~~~~gV~~~~~-~g~~~~~~~~~~~a~~VVLaaGai~t 283 (538)
++..+ +..|++|+.++.+++|+.++++ +..+|+||.+.+. +|+.+.+ .+|.||||+|+++.
T Consensus 161 L~~~~~~~~~i~i~~~~~~~~Li~~~~g-~~~~v~Gv~~~~~~~g~~~~i-----~AkaVILATGG~g~ 223 (594)
T PLN02815 161 LLEAVKNDPNITFFEHHFAIDLLTSQDG-GSIVCHGADVLDTRTGEVVRF-----ISKVTLLASGGAGH 223 (594)
T ss_pred HHHHHHhcCCCEEEeceEhheeeeecCC-CccEEEEEEEEEcCCCeEEEE-----EeceEEEcCCccee
Confidence 44433 3469999999999999986542 0013899988753 5655554 47999999999874
No 33
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=99.31 E-value=4.8e-11 Score=128.74 Aligned_cols=62 Identities=15% Similarity=0.198 Sum_probs=46.4
Q ss_pred HhhcCCCCeEEEeccEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCceEEEcCCCcCCHHHHHH
Q 009272 218 LEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLML 289 (538)
Q Consensus 218 l~~~~~~~~~i~~~~~V~~I~~~~~~~~~~~~~gV~~~~~~g~~~~~~~~~~~a~~VVLaaGai~tp~lLl~ 289 (538)
...+++.|++|++++.|++|+.+++ +++||.+.+.++ ...+. +++.||||+|++....-++.
T Consensus 221 ~~~~~~~Gv~i~~~~~v~~l~~~~g-----~V~GV~~~~~~~-~~~i~----a~k~VVlAtGg~~~n~~~~~ 282 (574)
T PRK12842 221 AKSALDLGIPILTGTPARELLTEGG-----RVVGARVIDAGG-ERRIT----ARRGVVLACGGFSHDLARIA 282 (574)
T ss_pred HHHHHhCCCEEEeCCEEEEEEeeCC-----EEEEEEEEcCCc-eEEEE----eCCEEEEcCCCccchHHHHH
Confidence 3456678999999999999998765 999999886444 33343 34689999999885555443
No 34
>PRK07395 L-aspartate oxidase; Provisional
Probab=99.31 E-value=1.7e-11 Score=130.97 Aligned_cols=57 Identities=14% Similarity=0.238 Sum_probs=43.1
Q ss_pred HHhhc-CCCCeEEEeccEEEEEEecC-CCCCCCeEEEEEEEeCCCCeEEEEeccCCCceEEEcCCCcCC
Q 009272 217 LLEYA-NPSGLTVLLHASVHKILFRN-KGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGS 283 (538)
Q Consensus 217 ~l~~~-~~~~~~i~~~~~V~~I~~~~-~~~~~~~~~gV~~~~~~g~~~~~~~~~~~a~~VVLaaGai~t 283 (538)
+...+ ++.|++|++++.|++|+.++ ++ +++||.+.+ +|..+.+ .++.||||+|+++.
T Consensus 140 L~~~~~~~~gi~i~~~~~v~~Li~~~~~g----~v~Gv~~~~-~g~~~~i-----~AkaVILATGG~~~ 198 (553)
T PRK07395 140 LTEQVLQRPNIEIISQALALSLWLEPETG----RCQGISLLY-QGQITWL-----RAGAVILATGGGGQ 198 (553)
T ss_pred HHHHHhhcCCcEEEECcChhhheecCCCC----EEEEEEEEE-CCeEEEE-----EcCEEEEcCCCCcc
Confidence 44434 35699999999999999874 23 899998764 5654444 47999999999764
No 35
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=99.31 E-value=1.9e-11 Score=130.89 Aligned_cols=194 Identities=19% Similarity=0.202 Sum_probs=106.6
Q ss_pred CCccEEEECCCCchHHHhhhhcC-CCeEEEEeccCCCCCCCCcccchhhhhhhcCCCCCCCCccccCCCceeecCccccc
Q 009272 45 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSPYGNPNITNSGSFSAELADLSPTSPSQRFISEDGVVSTRARVLG 123 (538)
Q Consensus 45 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lG 123 (538)
..|||||||||+.|+++|++|++ |++|+|||++....
T Consensus 5 ~~~DVvIIGGGi~G~~iA~~La~rG~~V~LlEk~d~~~------------------------------------------ 42 (546)
T PRK11101 5 QETDVIIIGGGATGAGIARDCALRGLRCILVERHDIAT------------------------------------------ 42 (546)
T ss_pred ccccEEEECcCHHHHHHHHHHHHcCCeEEEEECCCCCC------------------------------------------
Confidence 36999999999999999999999 99999999976421
Q ss_pred chhhhcccccccCCh------hhhhc--CCCC-hhhhhhh-hhhhccccccCC-CCchhHHHHHHHHHHcCCCC--CCCC
Q 009272 124 GGTCINAGFYTRAEP------YYARE--AGWD-GRLVNES-YQWVEKKVVFRP-PMQRWQSALRDGLVEVGVLP--YNGF 190 (538)
Q Consensus 124 G~s~~n~~~~~r~~~------~~~~~--~gw~-~~~l~~~-~~~~e~~~~~~~-~~~~~~~~~~~~~~~~g~~~--~~~~ 190 (538)
|+|..|.++...+.. ...+. .... +..+.++ +......+-..+ ....+...+.+...+.|+.. ....
T Consensus 43 GaS~~~~gllh~g~ry~~~~~~~~~~~~~e~~~l~~~a~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~Gi~~~~l~~~ 122 (546)
T PRK11101 43 GATGRNHGLLHSGARYAVTDAESARECISENQILKRIARHCVEPTDGLFITLPEDDLAFQATFIRACEEAGIEAEAIDPQ 122 (546)
T ss_pred CcccccccceeccchhcccCHHHHHHHHHHHHHHHHhchHhhcccCCceEEeccccHHHHHHHHHHHHHcCCCcEEECHH
Confidence 334444333321111 00000 0000 0001111 000000000111 11233444555556666531 0000
Q ss_pred ---c-cCCCCceeeeeeeeCCCCccccHHH---HHhhcCCCCeEEEeccEEEEEEecCCCCCCCeEEEEEEEeC-CCCeE
Q 009272 191 ---T-YDHLYGTKIGGTIIDQNSQRHTAAD---LLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDA-TDAEH 262 (538)
Q Consensus 191 ---~-~~~~~~~~~~~~~~~~~g~r~~~~~---~l~~~~~~~~~i~~~~~V~~I~~~~~~~~~~~~~gV~~~~~-~g~~~ 262 (538)
. .........++.+++ +|.-.+... +...+.+.|++++++++|+.|..+++ +++||++.+. +++..
T Consensus 123 e~~~~eP~l~~~~~ga~~~~-dg~vdp~rl~~al~~~A~~~Ga~i~~~t~V~~i~~~~~-----~v~gv~v~d~~~g~~~ 196 (546)
T PRK11101 123 QALILEPAVNPALIGAVKVP-DGTVDPFRLTAANMLDAKEHGAQILTYHEVTGLIREGD-----TVCGVRVRDHLTGETQ 196 (546)
T ss_pred HHHHhCCCcCccceEEEEec-CcEECHHHHHHHHHHHHHhCCCEEEeccEEEEEEEcCC-----eEEEEEEEEcCCCcEE
Confidence 0 001111122333333 565443322 33456778999999999999998766 8999998753 34444
Q ss_pred EEEeccCCCceEEEcCCCcCCHHHHHHcCC
Q 009272 263 IAYLRNGPKNEIIVSAGALGSPQLLMLSGV 292 (538)
Q Consensus 263 ~~~~~~~~a~~VVLaaGai~tp~lLl~SGi 292 (538)
.+ .++.||+|||+ ++..|+...|+
T Consensus 197 ~i-----~A~~VVnAaG~-wa~~l~~~~g~ 220 (546)
T PRK11101 197 EI-----HAPVVVNAAGI-WGQHIAEYADL 220 (546)
T ss_pred EE-----ECCEEEECCCh-hHHHHHHhcCC
Confidence 44 48999999998 67788776654
No 36
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=99.30 E-value=2.8e-11 Score=130.92 Aligned_cols=58 Identities=12% Similarity=0.213 Sum_probs=45.4
Q ss_pred HHhhcCCCCeEEEeccEEEEEEecCCCCCCCeEEEEEEEe-CCCCeEEEEeccCCCceEEEcCCCcCC
Q 009272 217 LLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRD-ATDAEHIAYLRNGPKNEIIVSAGALGS 283 (538)
Q Consensus 217 ~l~~~~~~~~~i~~~~~V~~I~~~~~~~~~~~~~gV~~~~-~~g~~~~~~~~~~~a~~VVLaaGai~t 283 (538)
+...+.+.|++++.++.|++|+.++++ +|.||.+.+ .+|+.+.+ .++.||||+|+++.
T Consensus 172 L~~~a~~~gv~i~~~~~~~~Li~~~~g----~v~Gv~~~~~~~g~~~~i-----~AkaVVLATGG~~~ 230 (617)
T PTZ00139 172 LYGQSLKYDCNFFIEYFALDLIMDEDG----ECRGVIAMSMEDGSIHRF-----RAHYTVIATGGYGR 230 (617)
T ss_pred HHHHHHhCCCEEEeceEEEEEEECCCC----EEEEEEEEECCCCeEEEE-----ECCcEEEeCCCCcc
Confidence 444566789999999999999985443 999998865 35655554 58999999999875
No 37
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=99.30 E-value=4.1e-11 Score=129.17 Aligned_cols=63 Identities=13% Similarity=0.192 Sum_probs=48.1
Q ss_pred HHhhcCCCCeEEEeccEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCceEEEcCCCcCCHHHHHH
Q 009272 217 LLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLML 289 (538)
Q Consensus 217 ~l~~~~~~~~~i~~~~~V~~I~~~~~~~~~~~~~gV~~~~~~g~~~~~~~~~~~a~~VVLaaGai~tp~lLl~ 289 (538)
++..+++.|+++++++.|++|+.+++ +++||.+.+ +++.+.+. +++.||||+|++....=|++
T Consensus 227 L~~~~~~~Gv~i~~~t~v~~Li~~~g-----~V~GV~~~~-~g~~~~i~----A~~~VVlAtGg~~~n~em~~ 289 (578)
T PRK12843 227 LLYSLRARGVRILTQTDVESLETDHG-----RVIGATVVQ-GGVRRRIR----ARGGVVLATGGFNRHPQLRR 289 (578)
T ss_pred HHHHHHhCCCEEEeCCEEEEEEeeCC-----EEEEEEEec-CCeEEEEE----ccceEEECCCCcccCHHHHH
Confidence 44556678999999999999998755 999998874 55555553 45899999999988644443
No 38
>PRK07804 L-aspartate oxidase; Provisional
Probab=99.29 E-value=4.9e-11 Score=127.54 Aligned_cols=36 Identities=25% Similarity=0.381 Sum_probs=33.9
Q ss_pred CCCccEEEECCCCchHHHhhhhcC-CCeEEEEeccCC
Q 009272 44 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 79 (538)
Q Consensus 44 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (538)
..++||||||+|.+|+.+|.++++ |.+|+||||++.
T Consensus 14 ~~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~ 50 (541)
T PRK07804 14 RDAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAAL 50 (541)
T ss_pred ccccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCC
Confidence 457999999999999999999999 999999999985
No 39
>PRK08071 L-aspartate oxidase; Provisional
Probab=99.28 E-value=4.3e-11 Score=127.02 Aligned_cols=56 Identities=20% Similarity=0.278 Sum_probs=43.9
Q ss_pred HHhhcCCCCeEEEeccEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCceEEEcCCCcCC
Q 009272 217 LLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGS 283 (538)
Q Consensus 217 ~l~~~~~~~~~i~~~~~V~~I~~~~~~~~~~~~~gV~~~~~~g~~~~~~~~~~~a~~VVLaaGai~t 283 (538)
+...+. .|+++++++.|++|+.+++ ++.||.+.+.+++.+.+ .++.||||+|++..
T Consensus 136 L~~~~~-~gV~i~~~~~v~~Li~~~g-----~v~Gv~~~~~~g~~~~i-----~Ak~VVlATGG~~~ 191 (510)
T PRK08071 136 LLQELV-PHVTVVEQEMVIDLIIENG-----RCIGVLTKDSEGKLKRY-----YADYVVLASGGCGG 191 (510)
T ss_pred HHHHHh-cCCEEEECeEhhheeecCC-----EEEEEEEEECCCcEEEE-----EcCeEEEecCCCcc
Confidence 334343 6999999999999988765 99999987655655454 47999999999875
No 40
>PRK09077 L-aspartate oxidase; Provisional
Probab=99.28 E-value=6e-11 Score=126.79 Aligned_cols=57 Identities=14% Similarity=0.214 Sum_probs=41.9
Q ss_pred CCCCeEEEeccEEEEEEecCC-CCCCCeEEEEEEEeC-CCCeEEEEeccCCCceEEEcCCCcCC
Q 009272 222 NPSGLTVLLHASVHKILFRNK-GKARPVAHGVVFRDA-TDAEHIAYLRNGPKNEIIVSAGALGS 283 (538)
Q Consensus 222 ~~~~~~i~~~~~V~~I~~~~~-~~~~~~~~gV~~~~~-~g~~~~~~~~~~~a~~VVLaaGai~t 283 (538)
++.|++|+.++.|++|+.+++ +....+++||.+.+. +++.+.+ .++.||||+|++..
T Consensus 150 ~~~~I~v~~~~~v~~Li~~~~~~~~~g~v~Gv~~~~~~~g~~~~i-----~Ak~VVlATGG~~~ 208 (536)
T PRK09077 150 NHPNITVLERHNAIDLITSDKLGLPGRRVVGAYVLNRNKERVETI-----RAKFVVLATGGASK 208 (536)
T ss_pred hCCCcEEEeeEEeeeeeecccccCCCCEEEEEEEEECCCCcEEEE-----ecCeEEECCCCCCC
Confidence 456999999999999998641 000028999998764 4555454 57999999999874
No 41
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.28 E-value=3.9e-11 Score=129.35 Aligned_cols=50 Identities=22% Similarity=0.290 Sum_probs=40.1
Q ss_pred CeEEEeccEEEEEEecCCCCCCCeEEEEEEEeC-CCCeEEEEeccCCCceEEEcCCCcCC
Q 009272 225 GLTVLLHASVHKILFRNKGKARPVAHGVVFRDA-TDAEHIAYLRNGPKNEIIVSAGALGS 283 (538)
Q Consensus 225 ~~~i~~~~~V~~I~~~~~~~~~~~~~gV~~~~~-~g~~~~~~~~~~~a~~VVLaaGai~t 283 (538)
+++++.++.+++|+.++++ +|+||.+.+. +++.+.+ .++.||||+|+++.
T Consensus 151 ~i~i~~~~~~~~Li~~~~g----~v~Gv~~~~~~~g~~~~i-----~AkaVILATGG~~~ 201 (589)
T PRK08641 151 LVTKYEGWEFLGAVLDDEG----VCRGIVAQDLFTMEIESF-----PADAVIMATGGPGI 201 (589)
T ss_pred CcEEEeeEEEEEEEECCCC----EEEEEEEEECCCCcEEEE-----ECCEEEECCCCCcC
Confidence 4899999999999987544 9999999864 3444444 58999999999885
No 42
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.27 E-value=5.9e-11 Score=127.97 Aligned_cols=57 Identities=19% Similarity=0.355 Sum_probs=44.5
Q ss_pred HHhhcCCCCeEEEeccEEEEEEecCCCCCCCeEEEEEEEe-CCCCeEEEEeccCCCceEEEcCCCcCC
Q 009272 217 LLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRD-ATDAEHIAYLRNGPKNEIIVSAGALGS 283 (538)
Q Consensus 217 ~l~~~~~~~~~i~~~~~V~~I~~~~~~~~~~~~~gV~~~~-~~g~~~~~~~~~~~a~~VVLaaGai~t 283 (538)
+...+.+.|+++++++.|++|+.+++ ++.||...+ .+++...+ .++.||||+|++..
T Consensus 141 L~~~~~~~gi~i~~~t~v~~L~~~~g-----~v~Gv~~~~~~~g~~~~i-----~AkaVVlATGG~~~ 198 (575)
T PRK05945 141 LVNNLRRYGVTIYDEWYVMRLILEDN-----QAKGVVMYHIADGRLEVV-----RAKAVMFATGGYGR 198 (575)
T ss_pred HHHHHhhCCCEEEeCcEEEEEEEECC-----EEEEEEEEEcCCCeEEEE-----ECCEEEECCCCCcC
Confidence 45556678999999999999998765 999998754 35554444 47999999999865
No 43
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=99.26 E-value=4.4e-11 Score=130.10 Aligned_cols=57 Identities=18% Similarity=0.173 Sum_probs=46.0
Q ss_pred HHhhcCCCCeEEEeccEEEEEEecCCCCCCCeEEEEEEEe-CCCCeEEEEeccCCCceEEEcCCCcCC
Q 009272 217 LLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRD-ATDAEHIAYLRNGPKNEIIVSAGALGS 283 (538)
Q Consensus 217 ~l~~~~~~~~~i~~~~~V~~I~~~~~~~~~~~~~gV~~~~-~~g~~~~~~~~~~~a~~VVLaaGai~t 283 (538)
+...+.+.|++|+.++.|++|+.+++ ++.||.+.+ .+|+.+.+ .++.||||+|+++.
T Consensus 164 L~~~~~~~gv~i~~~~~~~~Li~~~g-----~v~Gv~~~~~~~G~~~~i-----~AkaVVLATGG~g~ 221 (657)
T PRK08626 164 VDNEAIKLGVPVHDRKEAIALIHDGK-----RCYGAVVRCLITGELRAY-----VAKATLIATGGYGR 221 (657)
T ss_pred HHHHHHhCCCEEEeeEEEEEEEEECC-----EEEEEEEEEcCCCcEEEE-----EcCeEEECCCcccC
Confidence 33456678999999999999998765 999999986 46765555 47999999999875
No 44
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=99.25 E-value=1e-10 Score=125.96 Aligned_cols=52 Identities=15% Similarity=0.188 Sum_probs=41.4
Q ss_pred CCCCeEEEeccEEEEEEecCCCCCCCeEEEEEEEe-CCCCeEEEEeccCCCceEEEcCCCcCC
Q 009272 222 NPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRD-ATDAEHIAYLRNGPKNEIIVSAGALGS 283 (538)
Q Consensus 222 ~~~~~~i~~~~~V~~I~~~~~~~~~~~~~gV~~~~-~~g~~~~~~~~~~~a~~VVLaaGai~t 283 (538)
+..|++++.++.|++|+.+++ ++.||.+.+ .+|+.+.+ .++.||||+|++..
T Consensus 145 ~~~~i~i~~~~~v~~Li~~~g-----~v~Gv~~~~~~~g~~~~i-----~AkaVIlATGG~~~ 197 (582)
T PRK09231 145 KYPQIQRFDEHFVLDILVDDG-----HVRGLVAMNMMEGTLVQI-----RANAVVMATGGAGR 197 (582)
T ss_pred cCCCcEEEeCeEEEEEEEeCC-----EEEEEEEEEcCCCcEEEE-----ECCEEEECCCCCcC
Confidence 335899999999999998765 999998765 35654454 58999999999764
No 45
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=99.24 E-value=5.7e-11 Score=128.65 Aligned_cols=77 Identities=21% Similarity=0.173 Sum_probs=55.1
Q ss_pred eCCCCccccHHH---HHhhcCCCCeEEEeccEEEEEEecC-CCCCCCeEEEEEEEeC-CCCeEEEEeccCCCceEEEcCC
Q 009272 205 IDQNSQRHTAAD---LLEYANPSGLTVLLHASVHKILFRN-KGKARPVAHGVVFRDA-TDAEHIAYLRNGPKNEIIVSAG 279 (538)
Q Consensus 205 ~~~~g~r~~~~~---~l~~~~~~~~~i~~~~~V~~I~~~~-~~~~~~~~~gV~~~~~-~g~~~~~~~~~~~a~~VVLaaG 279 (538)
...+|.-.+... ++..+.+.|++++.+++|++|..++ ++ ++++|.+.+. +++.+.+ .++.||+|||
T Consensus 223 ~~~Dg~vdp~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g----~v~gV~v~d~~tg~~~~i-----~a~~VVnAaG 293 (627)
T PLN02464 223 VYYDGQMNDSRLNVALACTAALAGAAVLNYAEVVSLIKDESTG----RIVGARVRDNLTGKEFDV-----YAKVVVNAAG 293 (627)
T ss_pred EecCcEEcHHHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCC----cEEEEEEEECCCCcEEEE-----EeCEEEECCC
Confidence 334565443322 4456778899999999999999874 33 8999988763 3444444 4899999999
Q ss_pred CcCCHHHHHHcC
Q 009272 280 ALGSPQLLMLSG 291 (538)
Q Consensus 280 ai~tp~lLl~SG 291 (538)
+ ++.+++...|
T Consensus 294 a-ws~~l~~~~g 304 (627)
T PLN02464 294 P-FCDEVRKMAD 304 (627)
T ss_pred H-hHHHHHHhcc
Confidence 8 6778877665
No 46
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.24 E-value=1.1e-10 Score=125.86 Aligned_cols=58 Identities=14% Similarity=0.159 Sum_probs=44.9
Q ss_pred HHhhcCCCCeEEEeccEEEEEEecCCCCCCCeEEEEEEEeC-CCCeEEEEeccCCCceEEEcCCCcCC
Q 009272 217 LLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDA-TDAEHIAYLRNGPKNEIIVSAGALGS 283 (538)
Q Consensus 217 ~l~~~~~~~~~i~~~~~V~~I~~~~~~~~~~~~~gV~~~~~-~g~~~~~~~~~~~a~~VVLaaGai~t 283 (538)
++..+.+.|++++.++.|++|+.++++ ++.||.+.+. +|+...+ .+|.||||+|++..
T Consensus 154 L~~~~~~~gi~i~~~~~~~~Li~~~~g----~v~Gv~~~~~~~g~~~~i-----~AkaVILATGG~~~ 212 (591)
T PRK07057 154 LYQQNVAAKTQFFVEWMALDLIRDADG----DVLGVTALEMETGDVYIL-----EAKTTLFATGGAGR 212 (591)
T ss_pred HHHHHHhcCCEEEeCcEEEEEEEcCCC----eEEEEEEEEcCCCeEEEE-----ECCeEEECCCCccc
Confidence 444556689999999999999987544 8999988653 4544444 58999999999875
No 47
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=99.24 E-value=1.1e-10 Score=123.46 Aligned_cols=56 Identities=13% Similarity=0.264 Sum_probs=43.0
Q ss_pred HHhhcCC-CCeEEEeccEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCceEEEcCCCcCC
Q 009272 217 LLEYANP-SGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGS 283 (538)
Q Consensus 217 ~l~~~~~-~~~~i~~~~~V~~I~~~~~~~~~~~~~gV~~~~~~g~~~~~~~~~~~a~~VVLaaGai~t 283 (538)
+...+++ .|++++.++.|++|+.+++ +++||.+.+. +....+ .++.||||+|++..
T Consensus 134 L~~~~~~~~gi~i~~~~~v~~l~~~~g-----~v~Gv~~~~~-~~~~~i-----~A~~VVlAtGG~~~ 190 (488)
T TIGR00551 134 LVKKALNHPNIRIIEGENALDLLIETG-----RVVGVWVWNR-ETVETC-----HADAVVLATGGAGK 190 (488)
T ss_pred HHHHHHhcCCcEEEECeEeeeeeccCC-----EEEEEEEEEC-CcEEEE-----EcCEEEECCCcccC
Confidence 4444444 7999999999999998765 8999988764 433343 47999999999875
No 48
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=99.22 E-value=1.6e-10 Score=124.18 Aligned_cols=52 Identities=13% Similarity=0.143 Sum_probs=42.0
Q ss_pred CCCCeEEEeccEEEEEEecCCCCCCCeEEEEEEEe-CCCCeEEEEeccCCCceEEEcCCCcCC
Q 009272 222 NPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRD-ATDAEHIAYLRNGPKNEIIVSAGALGS 283 (538)
Q Consensus 222 ~~~~~~i~~~~~V~~I~~~~~~~~~~~~~gV~~~~-~~g~~~~~~~~~~~a~~VVLaaGai~t 283 (538)
+..|++++.++.|++|+.+++ ++.||.+.+ .+|+.+.+ .++.||||+|++..
T Consensus 144 ~~~~i~i~~~~~v~~Li~~~g-----~v~Gv~~~~~~~g~~~~i-----~AkaVILATGG~~~ 196 (580)
T TIGR01176 144 TYPQIMRYDEWFVTDLLVDDG-----RVCGLVAIEMAEGRLVTI-----LADAVVLATGGAGR 196 (580)
T ss_pred hcCCCEEEeCeEEEEEEeeCC-----EEEEEEEEEcCCCcEEEE-----ecCEEEEcCCCCcc
Confidence 346899999999999998765 999998765 35655555 47999999999774
No 49
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.21 E-value=1.4e-10 Score=125.88 Aligned_cols=35 Identities=29% Similarity=0.363 Sum_probs=32.9
Q ss_pred CCccEEEECCCCchHHHhhhhcC-CCeEEEEeccCC
Q 009272 45 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 79 (538)
Q Consensus 45 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (538)
.++||||||||.+|+++|..+++ |.+|+||||++.
T Consensus 7 ~~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~ 42 (626)
T PRK07803 7 HSYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLF 42 (626)
T ss_pred eeecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCC
Confidence 46999999999999999999999 999999999974
No 50
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=99.21 E-value=1.7e-10 Score=124.65 Aligned_cols=57 Identities=18% Similarity=0.241 Sum_probs=44.4
Q ss_pred HHhhcCCCCeEEEeccEEEEEEecCCCCCCCeEEEEEEEeC-CCCeEEEEeccCCCceEEEcCCCcCC
Q 009272 217 LLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDA-TDAEHIAYLRNGPKNEIIVSAGALGS 283 (538)
Q Consensus 217 ~l~~~~~~~~~i~~~~~V~~I~~~~~~~~~~~~~gV~~~~~-~g~~~~~~~~~~~a~~VVLaaGai~t 283 (538)
+...+.+.|++++.++.|++|+.+++ +++||.+.+. +|+...+ .++.||||+|++..
T Consensus 135 L~~~~~~~gv~i~~~~~v~~L~~~~g-----~v~Gv~~~~~~~g~~~~i-----~Ak~VVlAtGG~~~ 192 (566)
T TIGR01812 135 LYEQCLKLGVSFFNEYFALDLIHDDG-----RVRGVVAYDLKTGEIVFF-----RAKAVVLATGGYGR 192 (566)
T ss_pred HHHHHHHcCCEEEeccEEEEEEEeCC-----EEEEEEEEECCCCcEEEE-----ECCeEEECCCcccC
Confidence 44445556999999999999998765 9999988653 5554444 47999999999764
No 51
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.19 E-value=2.3e-10 Score=123.45 Aligned_cols=58 Identities=24% Similarity=0.347 Sum_probs=44.6
Q ss_pred HHhhcCCCCeEEEeccEEEEEEecCC---CCCCCeEEEEEEEe-CCCCeEEEEeccCCCceEEEcCCCcCC
Q 009272 217 LLEYANPSGLTVLLHASVHKILFRNK---GKARPVAHGVVFRD-ATDAEHIAYLRNGPKNEIIVSAGALGS 283 (538)
Q Consensus 217 ~l~~~~~~~~~i~~~~~V~~I~~~~~---~~~~~~~~gV~~~~-~~g~~~~~~~~~~~a~~VVLaaGai~t 283 (538)
+...+++.|++++.++.|++|+.+++ + +++||...+ .+++.+.+ .++.||||+|+++.
T Consensus 146 L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g----~v~Gv~~~~~~~g~~~~i-----~AkaVVLATGG~~~ 207 (583)
T PRK08205 146 LYQNCVKHGVEFFNEFYVLDLLLTETPSGP----VAAGVVAYELATGEIHVF-----HAKAVVFATGGSGR 207 (583)
T ss_pred HHHHHHhcCCEEEeCCEEEEEEecCCccCC----cEEEEEEEEcCCCeEEEE-----EeCeEEECCCCCcc
Confidence 44456678999999999999998752 3 899998864 34554444 47999999999874
No 52
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=99.19 E-value=2.1e-10 Score=116.15 Aligned_cols=193 Identities=20% Similarity=0.200 Sum_probs=108.5
Q ss_pred CCccEEEECCCCchHHHhhhhcC-C--CeEEEEeccCCCCCCCCcccchhhhhhhcCCCCCCCCccccCCCceeecCccc
Q 009272 45 SYYDYIVIGGGTAGCPLAASLSQ-N--ASVLLLERGDSPYGNPNITNSGSFSAELADLSPTSPSQRFISEDGVVSTRARV 121 (538)
Q Consensus 45 ~~~DvIIVGsG~aG~~~A~~La~-g--~~VlvlE~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 121 (538)
+.|||+|||+|+.|+++|+.|++ . ++|+||||-.....
T Consensus 2 ~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a~--------------------------------------- 42 (429)
T COG0579 2 MDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQ--------------------------------------- 42 (429)
T ss_pred CceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCcccc---------------------------------------
Confidence 46999999999999999999999 5 99999999986421
Q ss_pred ccchhhhcccccccC-----Ch--hhhhcCC---CChhhhhh---hhhhhccc-cccCCCCchhHHHHHHHHHHcCCCCC
Q 009272 122 LGGGTCINAGFYTRA-----EP--YYAREAG---WDGRLVNE---SYQWVEKK-VVFRPPMQRWQSALRDGLVEVGVLPY 187 (538)
Q Consensus 122 lGG~s~~n~~~~~r~-----~~--~~~~~~g---w~~~~l~~---~~~~~e~~-~~~~~~~~~~~~~~~~~~~~~g~~~~ 187 (538)
++|..|+++..-+ .+ ..+...| | ++--++ -|.....+ +....+.-+..+.+.+.+.+.|+...
T Consensus 43 --~sS~~NSgviHag~~y~p~slka~l~~~g~~~~-~~~~kq~~~~f~~~g~l~vA~~e~e~~~L~~l~~~~~~ngv~~~ 119 (429)
T COG0579 43 --ESSSNNSGVIHAGLYYTPGSLKAKLCVAGNINE-FAICKQLGIPFINCGKLSVATGEEEVERLEKLYERGKANGVFDL 119 (429)
T ss_pred --ccccCcccceeccccCCCcchhhHHHHHHHHHH-HHHHHHhCCcccccCeEEEEEChHHHHHHHHHHHHHhhCCCcce
Confidence 2333333332221 11 0000000 1 100000 11111111 11222334455666677777776511
Q ss_pred CCCc------cC--CCCceeeeeeeeCCCCccccH---HHHHhhcCCCCeEEEeccEEEEEEecCCCCCCCeEEEEEEEe
Q 009272 188 NGFT------YD--HLYGTKIGGTIIDQNSQRHTA---ADLLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRD 256 (538)
Q Consensus 188 ~~~~------~~--~~~~~~~~~~~~~~~g~r~~~---~~~l~~~~~~~~~i~~~~~V~~I~~~~~~~~~~~~~gV~~~~ 256 (538)
...+ .. ...+ ..+..+.+..|.-... ..|...+...|++|..+++|++|..+++ .++-+.+
T Consensus 120 ~~ld~~~i~~~eP~l~~~-~~aal~~p~~giV~~~~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~d-----g~~~~~~-- 191 (429)
T COG0579 120 EILDKEEIKELEPLLNEG-AVAALLVPSGGIVDPGELTRALAEEAQANGVELRLNTEVTGIEKQSD-----GVFVLNT-- 191 (429)
T ss_pred eecCHHHHHhhCcccccc-ceeeEEcCCCceEcHHHHHHHHHHHHHHcCCEEEecCeeeEEEEeCC-----ceEEEEe--
Confidence 1000 00 1111 2222333444433322 2255656667999999999999999887 2222222
Q ss_pred CCCCeEEEEeccCCCceEEEcCCCcCCHHHHHHcCCCC
Q 009272 257 ATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVGP 294 (538)
Q Consensus 257 ~~g~~~~~~~~~~~a~~VVLaaGai~tp~lLl~SGig~ 294 (538)
.+|+.. + .++.||.|||. .+.+|+.++|+.+
T Consensus 192 ~~g~~~-~-----~ak~Vin~AGl-~Ad~la~~~g~~~ 222 (429)
T COG0579 192 SNGEET-L-----EAKFVINAAGL-YADPLAQMAGIPE 222 (429)
T ss_pred cCCcEE-E-----EeeEEEECCch-hHHHHHHHhCCCc
Confidence 356544 4 48999999997 7889999998864
No 53
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.18 E-value=1.9e-11 Score=124.22 Aligned_cols=60 Identities=28% Similarity=0.345 Sum_probs=44.3
Q ss_pred HHhhcCCCCeEEEeccEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCceEEEcCCCcCCHHHHHHcCC
Q 009272 217 LLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGV 292 (538)
Q Consensus 217 ~l~~~~~~~~~i~~~~~V~~I~~~~~~~~~~~~~gV~~~~~~g~~~~~~~~~~~a~~VVLaaGai~tp~lLl~SGi 292 (538)
+...+++.|++++++++|++|..+++ +++||.+. +|+ + .++.||+|+|+ +++.|+...|+
T Consensus 153 l~~~~~~~Gv~i~~~~~V~~i~~~~~-----~v~gv~~~--~g~---i-----~ad~vV~a~G~-~s~~l~~~~~~ 212 (358)
T PF01266_consen 153 LAAEAQRAGVEIRTGTEVTSIDVDGG-----RVTGVRTS--DGE---I-----RADRVVLAAGA-WSPQLLPLLGL 212 (358)
T ss_dssp HHHHHHHTT-EEEESEEEEEEEEETT-----EEEEEEET--TEE---E-----EECEEEE--GG-GHHHHHHTTTT
T ss_pred hHHHHHHhhhhccccccccchhhccc-----cccccccc--ccc---c-----ccceeEecccc-cceeeeecccc
Confidence 44456667999999999999999988 88888875 453 2 36999999997 67887777654
No 54
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.17 E-value=2.5e-10 Score=123.31 Aligned_cols=57 Identities=19% Similarity=0.202 Sum_probs=43.3
Q ss_pred HHhhc-CCCCeEEEeccEEEEEEecCCCCCCCeEEEEEEEeC-CCCeEEEEeccCCCceEEEcCCCcCC
Q 009272 217 LLEYA-NPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDA-TDAEHIAYLRNGPKNEIIVSAGALGS 283 (538)
Q Consensus 217 ~l~~~-~~~~~~i~~~~~V~~I~~~~~~~~~~~~~gV~~~~~-~g~~~~~~~~~~~a~~VVLaaGai~t 283 (538)
++..+ +..|++++.++.|++|+.+++ +++||.+.+. +++.+.+ .++.||||+|++..
T Consensus 143 L~~~~~~~~gv~i~~~~~v~~Li~~~g-----~v~Gv~~~~~~~g~~~~i-----~Ak~VIlATGG~~~ 201 (577)
T PRK06069 143 LYSRALRFDNIHFYDEHFVTSLIVENG-----VFKGVTAIDLKRGEFKVF-----QAKAGIIATGGAGR 201 (577)
T ss_pred HHHHHHhcCCCEEEECCEEEEEEEECC-----EEEEEEEEEcCCCeEEEE-----ECCcEEEcCchhcc
Confidence 44433 346999999999999998765 9999988653 4544444 48999999999864
No 55
>PRK07512 L-aspartate oxidase; Provisional
Probab=99.16 E-value=3.5e-10 Score=120.15 Aligned_cols=56 Identities=20% Similarity=0.424 Sum_probs=42.1
Q ss_pred HHhhcC-CCCeEEEeccEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCceEEEcCCCcCC
Q 009272 217 LLEYAN-PSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGS 283 (538)
Q Consensus 217 ~l~~~~-~~~~~i~~~~~V~~I~~~~~~~~~~~~~gV~~~~~~g~~~~~~~~~~~a~~VVLaaGai~t 283 (538)
+...+. +.|++++.++.|++|+.+++ +++||.+.+ .+..+.+ .++.||||+|+++.
T Consensus 142 L~~~~~~~~gV~i~~~~~v~~Li~~~g-----~v~Gv~~~~-~~~~~~i-----~Ak~VVLATGG~~~ 198 (513)
T PRK07512 142 LIAAVRATPSITVLEGAEARRLLVDDG-----AVAGVLAAT-AGGPVVL-----PARAVVLATGGIGG 198 (513)
T ss_pred HHHHHHhCCCCEEEECcChhheeecCC-----EEEEEEEEe-CCeEEEE-----ECCEEEEcCCCCcC
Confidence 444444 35899999999999987755 999998875 3333333 47999999999864
No 56
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=99.15 E-value=3.3e-10 Score=122.38 Aligned_cols=52 Identities=15% Similarity=0.250 Sum_probs=42.1
Q ss_pred CCCeEEEeccEEEEEEecCCCCCCCeEEEEEEEeC-CCCeEEEEeccCCCceEEEcCCCcCC
Q 009272 223 PSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDA-TDAEHIAYLRNGPKNEIIVSAGALGS 283 (538)
Q Consensus 223 ~~~~~i~~~~~V~~I~~~~~~~~~~~~~gV~~~~~-~g~~~~~~~~~~~a~~VVLaaGai~t 283 (538)
+.|+++++++.|++|+.++++ +|+||.+.+. +|+.+.+ .++.||||+|+++.
T Consensus 145 ~~gV~i~~~t~v~~Li~dd~g----rV~GV~~~~~~~g~~~~i-----~AkaVVLATGG~g~ 197 (603)
T TIGR01811 145 AGLVEKYEGWEMLDIIVVDGN----RARGIIARNLVTGEIETH-----SADAVILATGGYGN 197 (603)
T ss_pred cCCcEEEeCcEEEEEEEcCCC----EEEEEEEEECCCCcEEEE-----EcCEEEECCCCCcC
Confidence 458999999999999987654 9999998864 4554444 47999999999865
No 57
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=99.14 E-value=1.7e-10 Score=122.56 Aligned_cols=38 Identities=39% Similarity=0.595 Sum_probs=35.1
Q ss_pred CCCCCccEEEECCCCchHHHhhhhcC-CCeEEEEeccCC
Q 009272 42 KPVSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 79 (538)
Q Consensus 42 ~~~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (538)
+|.+.|||||||||+.|+.+|+.|++ |++|+|||+++.
T Consensus 2 ~~~~~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d~ 40 (508)
T PRK12266 2 TMMETYDLLVIGGGINGAGIARDAAGRGLSVLLCEQDDL 40 (508)
T ss_pred CCCCcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 45678999999999999999999999 999999999865
No 58
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=99.12 E-value=7.6e-10 Score=116.06 Aligned_cols=61 Identities=20% Similarity=0.164 Sum_probs=45.3
Q ss_pred HHhhcCC----CC--eEEEeccEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCceEEEcCCCcCCHHHHHHc
Q 009272 217 LLEYANP----SG--LTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLS 290 (538)
Q Consensus 217 ~l~~~~~----~~--~~i~~~~~V~~I~~~~~~~~~~~~~gV~~~~~~g~~~~~~~~~~~a~~VVLaaGai~tp~lLl~S 290 (538)
|...+++ .| ++|+++++|+.|..+++ ....|.+. +|. + .++.||+|||+ ++.+|+..+
T Consensus 217 l~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~-----~~~~V~T~--~G~---i-----~A~~VVvaAG~-~S~~La~~~ 280 (497)
T PTZ00383 217 FVKHARRDALVPGKKISINLNTEVLNIERSND-----SLYKIHTN--RGE---I-----RARFVVVSACG-YSLLFAQKM 280 (497)
T ss_pred HHHHHHhhhhhcCCCEEEEeCCEEEEEEecCC-----CeEEEEEC--CCE---E-----EeCEEEECcCh-hHHHHHHHh
Confidence 5555555 55 88999999999998755 44455442 452 3 47999999998 688899999
Q ss_pred CCC
Q 009272 291 GVG 293 (538)
Q Consensus 291 Gig 293 (538)
|++
T Consensus 281 Gi~ 283 (497)
T PTZ00383 281 GYG 283 (497)
T ss_pred CCC
Confidence 875
No 59
>PRK08275 putative oxidoreductase; Provisional
Probab=99.12 E-value=6.3e-10 Score=119.57 Aligned_cols=58 Identities=17% Similarity=0.212 Sum_probs=44.3
Q ss_pred HHhhcCCCCeEEEeccEEEEEEecCCCCCCCeEEEEEEEe-CCCCeEEEEeccCCCceEEEcCCCcCC
Q 009272 217 LLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRD-ATDAEHIAYLRNGPKNEIIVSAGALGS 283 (538)
Q Consensus 217 ~l~~~~~~~~~i~~~~~V~~I~~~~~~~~~~~~~gV~~~~-~~g~~~~~~~~~~~a~~VVLaaGai~t 283 (538)
+...+++.|++|+.++.|++|+.++++ ++.||.+.+ .+|+.+.+ .++.||||+|+++.
T Consensus 143 L~~~~~~~gv~i~~~~~v~~Li~~~~g----~v~Gv~~~~~~~g~~~~i-----~Ak~VIlATGG~~~ 201 (554)
T PRK08275 143 LYRQLKRARVLITNRIMATRLLTDADG----RVAGALGFDCRTGEFLVI-----RAKAVILCCGAAGR 201 (554)
T ss_pred HHHHHHHCCCEEEcceEEEEEEEcCCC----eEEEEEEEecCCCcEEEE-----ECCEEEECCCCccc
Confidence 444556789999999999999987443 899998765 35554444 47999999999753
No 60
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=99.12 E-value=7.4e-10 Score=118.96 Aligned_cols=53 Identities=19% Similarity=0.206 Sum_probs=41.0
Q ss_pred cCCCCeEEEeccEEEEEEecCC--CCCCCeEEEEEEEe-CCCCeEEEEeccCCCceEEEcCCCcC
Q 009272 221 ANPSGLTVLLHASVHKILFRNK--GKARPVAHGVVFRD-ATDAEHIAYLRNGPKNEIIVSAGALG 282 (538)
Q Consensus 221 ~~~~~~~i~~~~~V~~I~~~~~--~~~~~~~~gV~~~~-~~g~~~~~~~~~~~a~~VVLaaGai~ 282 (538)
+.+.+++++.++.|++|+.+++ + +++||.+.+ .+|+.+.+ .++.||||+|++.
T Consensus 136 l~~~~~~i~~~~~v~~Ll~d~~~~G----rV~Gv~~~~~~~g~~~~i-----~AkaVVLATGG~~ 191 (614)
T TIGR02061 136 AKNALGDIFERIFIVKLLLDKNTPN----RIAGAVGFNVRANEVHVF-----KAKTVIVAAGGAV 191 (614)
T ss_pred HHhCCCeEEcccEEEEEEecCCCCC----eEEEEEEEEeCCCcEEEE-----ECCEEEECCCccc
Confidence 3445679999999999998652 3 999998865 35555555 4899999999985
No 61
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.10 E-value=2.3e-09 Score=110.76 Aligned_cols=78 Identities=18% Similarity=0.215 Sum_probs=60.0
Q ss_pred hcCCCCeEEEeccEEEEEEecCCCCCCCeEEEEEEEeC-CCCeEEEEeccCCCceEEEcCCCcCCHHHHHHcCCCChh--
Q 009272 220 YANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDA-TDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVGPAD-- 296 (538)
Q Consensus 220 ~~~~~~~~i~~~~~V~~I~~~~~~~~~~~~~gV~~~~~-~g~~~~~~~~~~~a~~VVLaaGai~tp~lLl~SGig~~~-- 296 (538)
.+...|.++++.++|+.++.++ .++||++.|. +|+.+.+ .++.||.|||. ++-.++...+..+..
T Consensus 173 ~A~~~Ga~il~~~~v~~~~re~------~v~gV~~~D~~tg~~~~i-----ra~~VVNAaGp-W~d~i~~~~~~~~~~~~ 240 (532)
T COG0578 173 DAAEHGAEILTYTRVESLRREG------GVWGVEVEDRETGETYEI-----RARAVVNAAGP-WVDEILEMAGLEQSPHI 240 (532)
T ss_pred HHHhcccchhhcceeeeeeecC------CEEEEEEEecCCCcEEEE-----EcCEEEECCCc-cHHHHHHhhcccCCCCc
Confidence 5667899999999999999876 3899999985 4666666 48999999998 788888888665432
Q ss_pred -hhhhCCCceeecC
Q 009272 297 -HLKAHNITVVLDQ 309 (538)
Q Consensus 297 -~l~~~gi~~~~~~ 309 (538)
.....|+.++++.
T Consensus 241 ~vr~skGsHlVv~~ 254 (532)
T COG0578 241 GVRPSKGSHLVVDK 254 (532)
T ss_pred cceeccceEEEecc
Confidence 2335677777664
No 62
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=99.09 E-value=1.9e-09 Score=115.13 Aligned_cols=70 Identities=16% Similarity=0.143 Sum_probs=49.2
Q ss_pred eCCCCccccHHHHHhhcCCCCeEEEeccEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCceEEEcCCCcCCH
Q 009272 205 IDQNSQRHTAADLLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSP 284 (538)
Q Consensus 205 ~~~~g~r~~~~~~l~~~~~~~~~i~~~~~V~~I~~~~~~~~~~~~~gV~~~~~~g~~~~~~~~~~~a~~VVLaaGai~tp 284 (538)
++..|.......+...+++.|++|++++.|++|..+++ ++++|++. +|+. + .++.||+|++...+.
T Consensus 213 ~~~gG~~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~-----~~~~V~~~--~g~~--~-----~ad~VI~a~~~~~~~ 278 (502)
T TIGR02734 213 FPRGGTGALVAAMAKLAEDLGGELRLNAEVIRIETEGG-----RATAVHLA--DGER--L-----DADAVVSNADLHHTY 278 (502)
T ss_pred EcCCCHHHHHHHHHHHHHHCCCEEEECCeEEEEEeeCC-----EEEEEEEC--CCCE--E-----ECCEEEECCcHHHHH
Confidence 44455433333355556677999999999999998776 88888765 4543 2 379999999976666
Q ss_pred HHHH
Q 009272 285 QLLM 288 (538)
Q Consensus 285 ~lLl 288 (538)
..|+
T Consensus 279 ~~l~ 282 (502)
T TIGR02734 279 RRLL 282 (502)
T ss_pred HHhc
Confidence 5554
No 63
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=99.08 E-value=1.1e-09 Score=118.66 Aligned_cols=56 Identities=20% Similarity=0.202 Sum_probs=41.7
Q ss_pred HHhhcCC-CCeEEEeccEEEEEEecCCCCCCCeEEEEEEEe-CCCCeEEEEeccCCCceEEEcCCCcC
Q 009272 217 LLEYANP-SGLTVLLHASVHKILFRNKGKARPVAHGVVFRD-ATDAEHIAYLRNGPKNEIIVSAGALG 282 (538)
Q Consensus 217 ~l~~~~~-~~~~i~~~~~V~~I~~~~~~~~~~~~~gV~~~~-~~g~~~~~~~~~~~a~~VVLaaGai~ 282 (538)
+...+++ .|++++.++.|++|+.+++ +++||.+.+ .+++.+.+ .++.||||+|++.
T Consensus 138 L~~~a~~~ggV~i~~~~~v~~Li~~~g-----~v~Gv~~~~~~~g~~~~i-----~AkaVILATGG~~ 195 (608)
T PRK06854 138 VAEAAKKALGDNVLNRVFITDLLVDDN-----RIAGAVGFSVRENKFYVF-----KAKAVIVATGGAA 195 (608)
T ss_pred HHHHHHhcCCCEEEeCCEEEEEEEeCC-----EEEEEEEEEccCCcEEEE-----ECCEEEECCCchh
Confidence 3344444 4599999999999998765 899997654 34544444 4799999999976
No 64
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.08 E-value=7.2e-10 Score=117.81 Aligned_cols=37 Identities=38% Similarity=0.573 Sum_probs=34.7
Q ss_pred CCCCccEEEECCCCchHHHhhhhcC-CCeEEEEeccCC
Q 009272 43 PVSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 79 (538)
Q Consensus 43 ~~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (538)
|..+|||||||||+.|+++|+.|++ |.+|+|||+++.
T Consensus 3 ~~~~~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~d~ 40 (502)
T PRK13369 3 EPETYDLFVIGGGINGAGIARDAAGRGLKVLLCEKDDL 40 (502)
T ss_pred CCcccCEEEECCCHHHHHHHHHHHhCCCcEEEEECCCC
Confidence 5677999999999999999999999 999999999975
No 65
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.07 E-value=1.4e-09 Score=104.79 Aligned_cols=36 Identities=28% Similarity=0.339 Sum_probs=33.2
Q ss_pred CCCccEEEECCCCchHHHhhhhcC-CCeEEEEeccCC
Q 009272 44 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 79 (538)
Q Consensus 44 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (538)
..+|||+|||+|++|+++|++|++ |++|+|||+...
T Consensus 23 ~~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~ 59 (257)
T PRK04176 23 YLEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLS 59 (257)
T ss_pred hccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCC
Confidence 346999999999999999999999 999999999864
No 66
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=99.07 E-value=1.5e-09 Score=108.94 Aligned_cols=57 Identities=21% Similarity=0.307 Sum_probs=44.0
Q ss_pred HHh-hcCCCCeEEEeccEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCceEEEcCCCcC
Q 009272 217 LLE-YANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALG 282 (538)
Q Consensus 217 ~l~-~~~~~~~~i~~~~~V~~I~~~~~~~~~~~~~gV~~~~~~g~~~~~~~~~~~a~~VVLaaGai~ 282 (538)
++. ..+++|++|+.++.+.+|+++++. .+.||.+.+.+++...+ .++.||||+|+++
T Consensus 139 L~~~v~~~p~I~v~e~~~a~~li~~~~~----~~~Gv~~~~~~~~~~~~-----~a~~vVLATGG~g 196 (518)
T COG0029 139 LLKKVRNRPNITVLEGAEALDLIIEDGI----GVAGVLVLNRNGELGTF-----RAKAVVLATGGLG 196 (518)
T ss_pred HHHHHhcCCCcEEEecchhhhhhhcCCc----eEeEEEEecCCCeEEEE-----ecCeEEEecCCCc
Confidence 455 445689999999999999999873 55699998654434444 5899999999864
No 67
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.07 E-value=6.4e-09 Score=109.85 Aligned_cols=39 Identities=38% Similarity=0.575 Sum_probs=35.4
Q ss_pred CCccEEEECCCCchHHHhhhhcC-CCeEEEEeccCCCCCC
Q 009272 45 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSPYGN 83 (538)
Q Consensus 45 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~~~~ 83 (538)
..|||||||||.+|+++|..||+ |++|+|+||.......
T Consensus 2 ~~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~GG~ 41 (487)
T COG1233 2 PMYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGR 41 (487)
T ss_pred CCccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCCcc
Confidence 46999999999999999999999 9999999998876643
No 68
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=99.06 E-value=1e-09 Score=114.03 Aligned_cols=33 Identities=30% Similarity=0.412 Sum_probs=31.5
Q ss_pred ccEEEECCCCchHHHhhhhcC-CCeEEEEeccCC
Q 009272 47 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 79 (538)
Q Consensus 47 ~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (538)
+||||||+|..|+++|++|++ |.+|+||||++.
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~~ 35 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHRY 35 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 699999999999999999999 999999999974
No 69
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=99.06 E-value=4.8e-09 Score=110.36 Aligned_cols=82 Identities=22% Similarity=0.304 Sum_probs=52.5
Q ss_pred eeeeeCCCCccccHH---HHHhhcCCCCeEEEeccEEEEEEecCCCCCCCeEEEEEEEe-CCCCeEEEEeccCCCceEEE
Q 009272 201 GGTIIDQNSQRHTAA---DLLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRD-ATDAEHIAYLRNGPKNEIIV 276 (538)
Q Consensus 201 ~~~~~~~~g~r~~~~---~~l~~~~~~~~~i~~~~~V~~I~~~~~~~~~~~~~gV~~~~-~~g~~~~~~~~~~~a~~VVL 276 (538)
++.+++.+|.-.... .|...+++.|++|+++++|++|..++++ .+ .|.+.+ ..|+..++ .++.||+
T Consensus 165 gAl~~p~~g~Vdp~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~----~v-~v~~~~~~~g~~~~i-----~A~~VV~ 234 (483)
T TIGR01320 165 AANWAAEGTDVDFGALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDG----SW-TVTVKNTRTGGKRTL-----NTRFVFV 234 (483)
T ss_pred EEEEeCCCEEECHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCC----eE-EEEEeeccCCceEEE-----ECCEEEE
Confidence 344445555433332 2555566679999999999999876542 22 233332 23433334 4799999
Q ss_pred cCCCcCCHHHHHHcCCC
Q 009272 277 SAGALGSPQLLMLSGVG 293 (538)
Q Consensus 277 aaGai~tp~lLl~SGig 293 (538)
|||+ ++.+|+...|+.
T Consensus 235 AAG~-~s~~La~~~Gi~ 250 (483)
T TIGR01320 235 GAGG-GALPLLQKSGIP 250 (483)
T ss_pred CCCc-chHHHHHHcCCC
Confidence 9998 678888888774
No 70
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=99.05 E-value=1.8e-09 Score=112.04 Aligned_cols=36 Identities=36% Similarity=0.564 Sum_probs=32.3
Q ss_pred CCCccEEEECCCCchHHHhhhhcC--C-CeEEEEeccCC
Q 009272 44 VSYYDYIVIGGGTAGCPLAASLSQ--N-ASVLLLERGDS 79 (538)
Q Consensus 44 ~~~~DvIIVGsG~aG~~~A~~La~--g-~~VlvlE~G~~ 79 (538)
...|||||||+|+.|+++|++|++ | .+|+|||++..
T Consensus 28 ~~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~~ 66 (407)
T TIGR01373 28 KPTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGWL 66 (407)
T ss_pred CccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEcccc
Confidence 467999999999999999999997 7 49999999853
No 71
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=99.03 E-value=3e-10 Score=102.59 Aligned_cols=35 Identities=34% Similarity=0.464 Sum_probs=30.1
Q ss_pred CCccEEEECCCCchHHHhhhhcC-CCeEEEEeccCC
Q 009272 45 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 79 (538)
Q Consensus 45 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (538)
.+|||+|||+|++|+++|++|++ |+||+|+|+...
T Consensus 16 ~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~ 51 (230)
T PF01946_consen 16 LEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLS 51 (230)
T ss_dssp TEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS
T ss_pred ccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCC
Confidence 47999999999999999999999 999999999865
No 72
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=99.02 E-value=5.5e-09 Score=109.98 Aligned_cols=66 Identities=26% Similarity=0.391 Sum_probs=45.0
Q ss_pred HHhhcCCCC-eEEEeccEEEEEEecCCCCCCCeEEEEEEEe-CCCCeEEEEeccCCCceEEEcCCCcCCHHHHHHcCCC
Q 009272 217 LLEYANPSG-LTVLLHASVHKILFRNKGKARPVAHGVVFRD-ATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVG 293 (538)
Q Consensus 217 ~l~~~~~~~-~~i~~~~~V~~I~~~~~~~~~~~~~gV~~~~-~~g~~~~~~~~~~~a~~VVLaaGai~tp~lLl~SGig 293 (538)
|...+++.| ++|+++++|+.|..++++ .+ .|.+.+ .+|+..++ .++.||+|||+ ++.+|+..+|+.
T Consensus 189 L~~~a~~~Ggv~i~~~teV~~I~~~~dg----~~-~v~~~~~~~G~~~~i-----~A~~VVvaAGg-~s~~L~~~~Gi~ 256 (494)
T PRK05257 189 LVGYLQKQGNFELQLGHEVRDIKRNDDG----SW-TVTVKDLKTGEKRTV-----RAKFVFIGAGG-GALPLLQKSGIP 256 (494)
T ss_pred HHHHHHhCCCeEEEeCCEEEEEEECCCC----CE-EEEEEEcCCCceEEE-----EcCEEEECCCc-chHHHHHHcCCC
Confidence 445455554 899999999999886552 33 344432 23432334 47999999999 678888888774
No 73
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=99.01 E-value=4.3e-08 Score=104.38 Aligned_cols=70 Identities=17% Similarity=0.160 Sum_probs=47.1
Q ss_pred CCCccccHHHHHhhcCCCCeEEEeccEEEEEEecCCCCCCCeEEEEEEEeC-CCCeEEEEeccCCCceEEEcCCCcCCHH
Q 009272 207 QNSQRHTAADLLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDA-TDAEHIAYLRNGPKNEIIVSAGALGSPQ 285 (538)
Q Consensus 207 ~~g~r~~~~~~l~~~~~~~~~i~~~~~V~~I~~~~~~~~~~~~~gV~~~~~-~g~~~~~~~~~~~a~~VVLaaGai~tp~ 285 (538)
.+|...-...+...+++.|.+|+++++|++|..+++ ++++|.+.+. .++...+ .++.||+++....+.+
T Consensus 228 ~GG~~~l~~aL~~~~~~~G~~i~~~~~V~~I~~~~~-----~~~gv~~~~~~~~~~~~~-----~ad~VI~~~~~~~~~~ 297 (492)
T TIGR02733 228 HGSMQTLSDRLVEALKRDGGNLLTGQRVTAIHTKGG-----RAGWVVVVDSRKQEDLNV-----KADDVVANLPPQSLLE 297 (492)
T ss_pred cCcHHHHHHHHHHHHHhcCCEEeCCceEEEEEEeCC-----eEEEEEEecCCCCceEEE-----ECCEEEECCCHHHHHH
Confidence 445433333354555567999999999999999876 7888887642 1222233 4799999998755554
Q ss_pred H
Q 009272 286 L 286 (538)
Q Consensus 286 l 286 (538)
|
T Consensus 298 l 298 (492)
T TIGR02733 298 L 298 (492)
T ss_pred h
Confidence 3
No 74
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.00 E-value=2.3e-09 Score=110.32 Aligned_cols=33 Identities=42% Similarity=0.666 Sum_probs=31.4
Q ss_pred ccEEEECCCCchHHHhhhhcC-CCeEEEEeccCC
Q 009272 47 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 79 (538)
Q Consensus 47 ~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (538)
|||||||+|+.|+++|++|++ |.+|+|||++..
T Consensus 1 ~dvvIIGaGi~G~s~A~~La~~g~~V~l~e~~~~ 34 (380)
T TIGR01377 1 FDVIVVGAGIMGCFAAYHLAKHGKKTLLLEQFDL 34 (380)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEeccCC
Confidence 799999999999999999999 999999999864
No 75
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.00 E-value=2e-09 Score=121.84 Aligned_cols=51 Identities=14% Similarity=0.129 Sum_probs=40.9
Q ss_pred CCCeEEEeccEEEEEEecCCCCCCCeEEEEEEEe-CCCCeEEEEeccCCCceEEEcCCCcCC
Q 009272 223 PSGLTVLLHASVHKILFRNKGKARPVAHGVVFRD-ATDAEHIAYLRNGPKNEIIVSAGALGS 283 (538)
Q Consensus 223 ~~~~~i~~~~~V~~I~~~~~~~~~~~~~gV~~~~-~~g~~~~~~~~~~~a~~VVLaaGai~t 283 (538)
+.++++.+++.+++|+.+++ +++||.+.+ .+|+.+.+ .+|.||||+|+++.
T Consensus 155 ~~~i~~~~~~~~~~Li~~~g-----~v~Gv~~~~~~~g~~~~i-----~AkaVILATGG~g~ 206 (897)
T PRK13800 155 RERIRIENRLMPVRVLTEGG-----RAVGAAALNTRTGEFVTV-----GAKAVILATGPCGR 206 (897)
T ss_pred cCCcEEEeceeeEEEEeeCC-----EEEEEEEEecCCCcEEEE-----ECCEEEECCCcccc
Confidence 35899999999999998755 999998865 35665555 48999999999864
No 76
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=98.99 E-value=2.2e-09 Score=110.22 Aligned_cols=35 Identities=37% Similarity=0.416 Sum_probs=32.7
Q ss_pred CCccEEEECCCCchHHHhhhhcC-CCeEEEEeccCC
Q 009272 45 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 79 (538)
Q Consensus 45 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (538)
..|||+|||+|+.|+++|++|++ |.+|+|||++..
T Consensus 2 ~~~dv~IIGgGi~G~s~A~~L~~~g~~V~lie~~~~ 37 (376)
T PRK11259 2 MRYDVIVIGLGSMGSAAGYYLARRGLRVLGLDRFMP 37 (376)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCCCeEEEEecccC
Confidence 36999999999999999999999 999999999964
No 77
>PLN02661 Putative thiazole synthesis
Probab=98.98 E-value=5e-09 Score=103.32 Aligned_cols=36 Identities=33% Similarity=0.505 Sum_probs=32.6
Q ss_pred CCCccEEEECCCCchHHHhhhhcC--CCeEEEEeccCC
Q 009272 44 VSYYDYIVIGGGTAGCPLAASLSQ--NASVLLLERGDS 79 (538)
Q Consensus 44 ~~~~DvIIVGsG~aG~~~A~~La~--g~~VlvlE~G~~ 79 (538)
..++||+|||+|++|+++|+.|++ |.+|+|||++..
T Consensus 90 ~~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~ 127 (357)
T PLN02661 90 YADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVS 127 (357)
T ss_pred cccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcc
Confidence 447899999999999999999996 799999999864
No 78
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=98.98 E-value=6.1e-09 Score=108.47 Aligned_cols=32 Identities=28% Similarity=0.445 Sum_probs=30.3
Q ss_pred cEEEECCCCchHHHhhhhcC-CCeEEEEeccCC
Q 009272 48 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 79 (538)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (538)
||||||+|..|+++|++|++ |.+|+|||++..
T Consensus 2 ~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~~ 34 (416)
T PRK00711 2 RVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQPG 34 (416)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCEEEEEeCCCc
Confidence 79999999999999999999 999999999853
No 79
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=98.97 E-value=2.3e-09 Score=112.07 Aligned_cols=61 Identities=20% Similarity=0.288 Sum_probs=45.2
Q ss_pred HHhhcCCCCeEEEeccEEEEEEecC-CCCCCCeEEEEEEEeCCCCeEEEEeccCCCceEEEcCCCcCCHHHHHH
Q 009272 217 LLEYANPSGLTVLLHASVHKILFRN-KGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLML 289 (538)
Q Consensus 217 ~l~~~~~~~~~i~~~~~V~~I~~~~-~~~~~~~~~gV~~~~~~g~~~~~~~~~~~a~~VVLaaGai~tp~lLl~ 289 (538)
+...+++.|++|+++++|++|+.++ ++ +++||...+ ++ ..+ .++.||||+|++...+-++.
T Consensus 129 L~~~a~~~Gv~i~~~~~v~~l~~~~~~g----~v~gv~~~~-~~--~~i-----~ak~VIlAtGG~~~n~~~~~ 190 (432)
T TIGR02485 129 LYSSAERLGVEIRYGIAVDRIPPEAFDG----AHDGPLTTV-GT--HRI-----TTQALVLAAGGLGANRDWLR 190 (432)
T ss_pred HHHHHHHcCCEEEeCCEEEEEEecCCCC----eEEEEEEcC-Cc--EEE-----EcCEEEEcCCCcccCHHHHH
Confidence 4556677899999999999999873 33 888987642 22 333 47999999999987665443
No 80
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=98.97 E-value=1.9e-09 Score=113.43 Aligned_cols=39 Identities=28% Similarity=0.284 Sum_probs=33.8
Q ss_pred CCCCCCccEEEECCCCchHHHhhhhcC---CCeEEEEeccCC
Q 009272 41 AKPVSYYDYIVIGGGTAGCPLAASLSQ---NASVLLLERGDS 79 (538)
Q Consensus 41 ~~~~~~~DvIIVGsG~aG~~~A~~La~---g~~VlvlE~G~~ 79 (538)
+....++||+|||+|+.|+++|++|++ |.+|+|||++..
T Consensus 19 L~~~~~~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~~ 60 (460)
T TIGR03329 19 LVGDTQADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADLC 60 (460)
T ss_pred CCCCceeCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCcc
Confidence 334557999999999999999999997 689999999863
No 81
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=98.97 E-value=2.5e-09 Score=110.41 Aligned_cols=34 Identities=35% Similarity=0.741 Sum_probs=31.4
Q ss_pred CccEEEECCCCchHHHhhhhcC---CCeEEEEeccCC
Q 009272 46 YYDYIVIGGGTAGCPLAASLSQ---NASVLLLERGDS 79 (538)
Q Consensus 46 ~~DvIIVGsG~aG~~~A~~La~---g~~VlvlE~G~~ 79 (538)
.|||+|||+|++|+++|++|++ |.+|+||||+..
T Consensus 2 ~~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~~ 38 (393)
T PRK11728 2 MYDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKESG 38 (393)
T ss_pred CccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCCc
Confidence 4899999999999999999997 789999999864
No 82
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=98.97 E-value=4.3e-09 Score=100.98 Aligned_cols=35 Identities=31% Similarity=0.448 Sum_probs=33.2
Q ss_pred CCccEEEECCCCchHHHhhhhcC-CCeEEEEeccCC
Q 009272 45 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 79 (538)
Q Consensus 45 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (538)
.+|||+|||+|++|+++|+.|++ |.+|+||||+..
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~ 55 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLA 55 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 47999999999999999999999 999999999975
No 83
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.96 E-value=2.8e-09 Score=112.92 Aligned_cols=57 Identities=28% Similarity=0.362 Sum_probs=43.5
Q ss_pred HHhhcCC-CCeEEEeccEEEEEEecCCCCCCCeEEEEEEEeC-CCCeEEEEeccCCCceEEEcCCCcC
Q 009272 217 LLEYANP-SGLTVLLHASVHKILFRNKGKARPVAHGVVFRDA-TDAEHIAYLRNGPKNEIIVSAGALG 282 (538)
Q Consensus 217 ~l~~~~~-~~~~i~~~~~V~~I~~~~~~~~~~~~~gV~~~~~-~g~~~~~~~~~~~a~~VVLaaGai~ 282 (538)
+.....+ .+++++.+..|++|+.++++ .+.||...+. +|+.+.+ .+|.||+|+|+.+
T Consensus 144 L~~~~~~~~~~~~~~~~~~~~l~~~~~~----~v~Gvv~~~~~~g~~~~~-----~akavilaTGG~g 202 (562)
T COG1053 144 LYEQLLKFSGIEIFDEYFVLDLLVDDGG----GVAGVVARDLRTGELYVF-----RAKAVILATGGAG 202 (562)
T ss_pred HHHHHHHhhcchhhhhhhhhhheecCCC----cEEEEEEEEecCCcEEEE-----ecCcEEEccCCce
Confidence 3343334 67799999999999998773 5899988764 4555554 4799999999988
No 84
>PRK08401 L-aspartate oxidase; Provisional
Probab=98.94 E-value=1.2e-08 Score=107.28 Aligned_cols=32 Identities=31% Similarity=0.455 Sum_probs=30.7
Q ss_pred ccEEEECCCCchHHHhhhhcC-CCeEEEEeccC
Q 009272 47 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD 78 (538)
Q Consensus 47 ~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (538)
+||||||+|.+|+++|..|++ |.+|+|||++.
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~ 34 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGI 34 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 799999999999999999999 99999999985
No 85
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=98.93 E-value=5.7e-09 Score=93.69 Aligned_cols=34 Identities=32% Similarity=0.439 Sum_probs=32.3
Q ss_pred CccEEEECCCCchHHHhhhhcC-CCeEEEEeccCC
Q 009272 46 YYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 79 (538)
Q Consensus 46 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (538)
+.||||||+|++|+++|++||+ |.||+|+||.-.
T Consensus 30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls 64 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLS 64 (262)
T ss_pred hccEEEECcCcchHHHHHHHHhCCceEEEEEeecc
Confidence 6899999999999999999999 999999999865
No 86
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=98.92 E-value=5.2e-09 Score=99.68 Aligned_cols=40 Identities=33% Similarity=0.441 Sum_probs=36.4
Q ss_pred CCCCCccEEEECCCCchHHHhhhhcC-CCeEEEEeccCCCC
Q 009272 42 KPVSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSPY 81 (538)
Q Consensus 42 ~~~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~~ 81 (538)
.+.+.+|+||||+|.-|+++|++|++ |.++++||+-+...
T Consensus 3 ~~~~~~~viiVGAGVfG~stAyeLaK~g~killLeqf~~ph 43 (399)
T KOG2820|consen 3 EMVKSRDVIIVGAGVFGLSTAYELAKRGDKILLLEQFPLPH 43 (399)
T ss_pred ccccceeEEEEcccccchHHHHHHHhcCCeEEEEeccCCCc
Confidence 35678999999999999999999999 99999999998753
No 87
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.92 E-value=3.7e-09 Score=106.32 Aligned_cols=73 Identities=25% Similarity=0.269 Sum_probs=54.4
Q ss_pred CCCccccHHH--HHh-hcCCCCeEEEeccEEEEEEecCCCCCCCeEEEEEEEeC-CCCeEEEEeccCCCceEEEcCCCcC
Q 009272 207 QNSQRHTAAD--LLE-YANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDA-TDAEHIAYLRNGPKNEIIVSAGALG 282 (538)
Q Consensus 207 ~~g~r~~~~~--~l~-~~~~~~~~i~~~~~V~~I~~~~~~~~~~~~~gV~~~~~-~g~~~~~~~~~~~a~~VVLaaGai~ 282 (538)
-+|+...+.. .+. .|.+.|+++..+.+|.+++.++++ ++.|++++|. .|+++.++ +|.||-|+|-+
T Consensus 217 yDGQ~nDaRmnl~vAlTA~r~GA~v~Nh~ev~~Llkd~~~----kv~Ga~~rD~iTG~e~~I~-----Ak~VVNATGpf- 286 (680)
T KOG0042|consen 217 YDGQHNDARMNLAVALTAARNGATVLNHVEVVSLLKDKDG----KVIGARARDHITGKEYEIR-----AKVVVNATGPF- 286 (680)
T ss_pred ecCCCchHHHHHHHHHHHHhcchhhhhHHHHHHHhhCCCC----ceeeeEEEEeecCcEEEEE-----EEEEEeCCCCc-
Confidence 3565555543 111 456789999999999999999886 8999999874 68888874 89999999985
Q ss_pred CHHHHHH
Q 009272 283 SPQLLML 289 (538)
Q Consensus 283 tp~lLl~ 289 (538)
|-.|+.+
T Consensus 287 sDsIr~M 293 (680)
T KOG0042|consen 287 SDSIRKM 293 (680)
T ss_pred cHHHHhh
Confidence 4444443
No 88
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.88 E-value=9.6e-10 Score=114.39 Aligned_cols=59 Identities=20% Similarity=0.291 Sum_probs=0.0
Q ss_pred hcCCCCeEEEeccEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCceEEEcCCCcCCHHHHHHcCC
Q 009272 220 YANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGV 292 (538)
Q Consensus 220 ~~~~~~~~i~~~~~V~~I~~~~~~~~~~~~~gV~~~~~~g~~~~~~~~~~~a~~VVLaaGai~tp~lLl~SGi 292 (538)
.+.+.|++|++++.|..++.+++ ++++|.+.++.| ..++ .++.||-|+|- -.|+.++|+
T Consensus 99 ~l~e~gv~v~~~t~v~~v~~~~~-----~i~~V~~~~~~g-~~~i-----~A~~~IDaTG~---g~l~~~aG~ 157 (428)
T PF12831_consen 99 MLAEAGVEVLLGTRVVDVIRDGG-----RITGVIVETKSG-RKEI-----RAKVFIDATGD---GDLAALAGA 157 (428)
T ss_dssp -------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccc-----cccccccccccc-cccc-----ccccccccccc---ccccccccc
Confidence 44568999999999999999876 999999987666 4454 58999999993 477777776
No 89
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=98.88 E-value=7.1e-08 Score=100.97 Aligned_cols=66 Identities=21% Similarity=0.237 Sum_probs=44.7
Q ss_pred HHhhc-CCCCeEEEeccEEEEEEecCCCCCCCeEEEEEEEe-CCCCeEEEEeccCCCceEEEcCCCcCCHHHHHHcCCC
Q 009272 217 LLEYA-NPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRD-ATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVG 293 (538)
Q Consensus 217 ~l~~~-~~~~~~i~~~~~V~~I~~~~~~~~~~~~~gV~~~~-~~g~~~~~~~~~~~a~~VVLaaGai~tp~lLl~SGig 293 (538)
|...+ +..|++++++++|+.|..++++ .++ |.+.+ ..++..++ .++.||+|||+ ++.+|+..+|+.
T Consensus 190 L~~~l~~~~Gv~i~~~~~V~~I~~~~d~----~w~-v~v~~t~~g~~~~i-----~Ad~VV~AAGa-wS~~La~~~Gi~ 257 (497)
T PRK13339 190 LAKHLESHPNAQVKYNHEVVDLERLSDG----GWE-VTVKDRNTGEKREQ-----VADYVFIGAGG-GAIPLLQKSGIP 257 (497)
T ss_pred HHHHHHhCCCcEEEeCCEEEEEEECCCC----CEE-EEEEecCCCceEEE-----EcCEEEECCCc-chHHHHHHcCCC
Confidence 44544 3568999999999999877332 332 33322 23422233 47999999999 778888888874
No 90
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=98.85 E-value=4.3e-09 Score=107.62 Aligned_cols=33 Identities=33% Similarity=0.585 Sum_probs=31.3
Q ss_pred ccEEEECCCCchHHHhhhhcC-CCeEEEEeccCC
Q 009272 47 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 79 (538)
Q Consensus 47 ~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (538)
|||||||+|++|+++|++|++ |.+|+|||++..
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~~ 34 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSSR 34 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 699999999999999999999 999999999864
No 91
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=98.83 E-value=2.7e-08 Score=103.59 Aligned_cols=36 Identities=42% Similarity=0.718 Sum_probs=33.6
Q ss_pred CCccEEEECCCCchHHHhhhhcC-CCeEEEEeccCCC
Q 009272 45 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSP 80 (538)
Q Consensus 45 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~ 80 (538)
+.|||||||+|++|+++|+.|++ |.+|+||||+...
T Consensus 4 ~~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~ 40 (428)
T PRK10157 4 DIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSA 40 (428)
T ss_pred ccCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCC
Confidence 46999999999999999999999 9999999999764
No 92
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=98.80 E-value=3e-08 Score=104.80 Aligned_cols=35 Identities=43% Similarity=0.680 Sum_probs=32.4
Q ss_pred CCCccEEEECCCCchHHHhhhhcC-CCeEEEEeccC
Q 009272 44 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD 78 (538)
Q Consensus 44 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (538)
..+|||||||||+||+.+|..||+ |.+|+|||+..
T Consensus 2 ~~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~ 37 (618)
T PRK05192 2 PEEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNL 37 (618)
T ss_pred CccceEEEECchHHHHHHHHHHHHcCCcEEEEeccc
Confidence 346999999999999999999999 99999999874
No 93
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=98.80 E-value=7.8e-08 Score=91.39 Aligned_cols=36 Identities=36% Similarity=0.466 Sum_probs=33.1
Q ss_pred CCCccEEEECCCCchHHHhhhhcC-CCeEEEEeccCC
Q 009272 44 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 79 (538)
Q Consensus 44 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (538)
..++||||||+|.+|+++|.+||+ |++|+|||+-+.
T Consensus 3 ~~~~dvivvgaglaglvaa~elA~aG~~V~ildQEge 39 (552)
T COG3573 3 GLTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGE 39 (552)
T ss_pred cccccEEEECccHHHHHHHHHHHhcCceEEEEccccc
Confidence 347999999999999999999999 999999998764
No 94
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=98.79 E-value=2.8e-08 Score=102.53 Aligned_cols=36 Identities=39% Similarity=0.750 Sum_probs=34.0
Q ss_pred CCccEEEECCCCchHHHhhhhcC-CCeEEEEeccCCC
Q 009272 45 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSP 80 (538)
Q Consensus 45 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~ 80 (538)
.+|||||||+|++|+++|++|++ |.+|+|+|++...
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~ 38 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEP 38 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCC
Confidence 47999999999999999999999 9999999999875
No 95
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=98.79 E-value=5.4e-08 Score=100.68 Aligned_cols=46 Identities=33% Similarity=0.380 Sum_probs=40.2
Q ss_pred CCCCccEEEECCCCchHHHhhhhcC-CCeEEEEeccCCCCCCCCccc
Q 009272 43 PVSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSPYGNPNITN 88 (538)
Q Consensus 43 ~~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~~~~~~~~~ 88 (538)
|.++|||||||+|.+||++|..|++ |+|||+||+.++.+.......
T Consensus 1 m~~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~~as~~ 47 (443)
T PTZ00363 1 MDETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGESASLN 47 (443)
T ss_pred CCCcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCccccccc
Confidence 4678999999999999999999999 999999999998876555443
No 96
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=98.74 E-value=5e-08 Score=107.38 Aligned_cols=34 Identities=38% Similarity=0.557 Sum_probs=31.9
Q ss_pred CccEEEECCCCchHHHhhhhcC-CCeEEEEeccCC
Q 009272 46 YYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 79 (538)
Q Consensus 46 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (538)
.+||||||+|++|+++|++|++ |.+|+|||++..
T Consensus 260 ~~dVvIIGaGIaG~s~A~~La~~G~~V~VlE~~~~ 294 (662)
T PRK01747 260 ARDAAIIGGGIAGAALALALARRGWQVTLYEADEA 294 (662)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 5899999999999999999999 999999999853
No 97
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=98.74 E-value=4.7e-08 Score=94.67 Aligned_cols=55 Identities=18% Similarity=0.227 Sum_probs=44.6
Q ss_pred hcCCCCeEEEeccEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCceEEEcCCCcCCHH
Q 009272 220 YANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQ 285 (538)
Q Consensus 220 ~~~~~~~~i~~~~~V~~I~~~~~~~~~~~~~gV~~~~~~g~~~~~~~~~~~a~~VVLaaGai~tp~ 285 (538)
++..+|+++..+ .|+.|+.+++ .+.||.+.++.|++.+. .|..-|+|-|.+.+-|
T Consensus 157 a~slpNV~~eeG-tV~sLlee~g-----vvkGV~yk~k~gee~~~-----~ApLTvVCDGcfSnlR 211 (509)
T KOG1298|consen 157 AASLPNVRLEEG-TVKSLLEEEG-----VVKGVTYKNKEGEEVEA-----FAPLTVVCDGCFSNLR 211 (509)
T ss_pred HhcCCCeEEeee-eHHHHHhccC-----eEEeEEEecCCCceEEE-----ecceEEEecchhHHHH
Confidence 456789998655 7888888877 99999999888877665 4899999999987644
No 98
>PRK10015 oxidoreductase; Provisional
Probab=98.73 E-value=5.5e-08 Score=101.26 Aligned_cols=36 Identities=42% Similarity=0.701 Sum_probs=33.6
Q ss_pred CCccEEEECCCCchHHHhhhhcC-CCeEEEEeccCCC
Q 009272 45 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSP 80 (538)
Q Consensus 45 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~ 80 (538)
++|||||||+|++|+++|+.|++ |.+|+||||++..
T Consensus 4 ~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~ 40 (429)
T PRK10015 4 DKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSA 40 (429)
T ss_pred cccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCC
Confidence 46999999999999999999999 9999999999764
No 99
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=98.68 E-value=2.3e-07 Score=95.58 Aligned_cols=36 Identities=36% Similarity=0.578 Sum_probs=33.7
Q ss_pred CCCccEEEECCCCchHHHhhhhcC-CCeEEEEeccCC
Q 009272 44 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 79 (538)
Q Consensus 44 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (538)
..++||||||+|+.|+++|++|++ |.+|+|+|++..
T Consensus 2 ~~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~~ 38 (387)
T COG0665 2 SMKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEA 38 (387)
T ss_pred CCcceEEEECCcHHHHHHHHHHHHcCCEEEEEecCcc
Confidence 457999999999999999999999 999999999975
No 100
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=98.67 E-value=8.5e-07 Score=89.24 Aligned_cols=66 Identities=26% Similarity=0.325 Sum_probs=50.1
Q ss_pred HHh-hcCCCCeEEEeccEEEEEEecCCCCCCCeEEEEEEEeC-CCCeEEEEeccCCCceEEEcCCCcCCHHHHHHcCCC
Q 009272 217 LLE-YANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDA-TDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVG 293 (538)
Q Consensus 217 ~l~-~~~~~~~~i~~~~~V~~I~~~~~~~~~~~~~gV~~~~~-~g~~~~~~~~~~~a~~VVLaaGai~tp~lLl~SGig 293 (538)
++. ..++.|+++.++++|++|...++ .-.-|.+.+. .|+...+ .++-|+|.||+ ++=.||.+|||.
T Consensus 187 l~~~l~~~~~~~~~~~~eV~~i~r~~d-----g~W~v~~~~~~~~~~~~v-----~a~FVfvGAGG-~aL~LLqksgi~ 254 (488)
T PF06039_consen 187 LVEYLQKQKGFELHLNHEVTDIKRNGD-----GRWEVKVKDLKTGEKREV-----RAKFVFVGAGG-GALPLLQKSGIP 254 (488)
T ss_pred HHHHHHhCCCcEEEecCEeCeeEECCC-----CCEEEEEEecCCCCeEEE-----ECCEEEECCch-HhHHHHHHcCCh
Confidence 555 33456999999999999999877 3455666543 4555555 48999999999 788889999984
No 101
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.67 E-value=1.4e-07 Score=99.90 Aligned_cols=36 Identities=33% Similarity=0.574 Sum_probs=33.2
Q ss_pred CCCCccEEEECCCCchHHHhhhhcC-CCeEEEEeccC
Q 009272 43 PVSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD 78 (538)
Q Consensus 43 ~~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (538)
|...||+||||||++|+.+|.+|++ |++|+|+|++.
T Consensus 1 ~~~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~ 37 (472)
T PRK05976 1 MAKEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKGK 37 (472)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhCCCeEEEEEccC
Confidence 3568999999999999999999999 99999999864
No 102
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=98.65 E-value=1.8e-07 Score=98.12 Aligned_cols=63 Identities=19% Similarity=0.342 Sum_probs=46.9
Q ss_pred HHhhcCCCCeEEEeccEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCceEEEcCCCcCC
Q 009272 217 LLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGS 283 (538)
Q Consensus 217 ~l~~~~~~~~~i~~~~~V~~I~~~~~~~~~~~~~gV~~~~~~g~~~~~~~~~~~a~~VVLaaGai~t 283 (538)
+...+++.|++++++|+|++|..+.++ ++.+|+||++.. +|+...+.+. +++.||+++|++..
T Consensus 232 L~~~Le~~GV~f~~~t~VtdL~~~~d~-~~~~VtgI~~~~-~~~~~~I~l~--~~DlVivTnGs~t~ 294 (576)
T PRK13977 232 LIKYLEDHGVDFQYGTKVTDIDFDITG-GKKTATAIHLTR-NGKEETIDLT--EDDLVFVTNGSITE 294 (576)
T ss_pred HHHHHHhCCCEEEeCCEEEEEEEcCCC-CceEEEEEEEEe-CCceeEEEec--CCCEEEEeCCcCcc
Confidence 445677889999999999999986221 123899999974 3444444444 78999999999755
No 103
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.63 E-value=1.5e-07 Score=99.32 Aligned_cols=35 Identities=23% Similarity=0.286 Sum_probs=32.7
Q ss_pred CCCccEEEECCCCchHHHhhhhcC-CCeEEEEeccC
Q 009272 44 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD 78 (538)
Q Consensus 44 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (538)
+..||+||||+|++|..+|.+|++ |++|+|||+.+
T Consensus 2 ~~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~ 37 (471)
T PRK06467 2 EIKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYS 37 (471)
T ss_pred CccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 457999999999999999999999 99999999875
No 104
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=98.62 E-value=2.5e-07 Score=95.42 Aligned_cols=31 Identities=45% Similarity=0.660 Sum_probs=29.0
Q ss_pred EEECCCCchHHHhhhhcC-CCeEEEEeccCCC
Q 009272 50 IVIGGGTAGCPLAASLSQ-NASVLLLERGDSP 80 (538)
Q Consensus 50 IIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~ 80 (538)
||||+|++|+++|+.|++ |.+|+|||+.+..
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~ 32 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKI 32 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCccc
Confidence 699999999999999999 9999999999753
No 105
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=98.61 E-value=1.9e-07 Score=99.28 Aligned_cols=71 Identities=20% Similarity=0.191 Sum_probs=50.8
Q ss_pred eeCCCCccccHHHHHhhcCCCCeEEEeccEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCceEEEcCCCcCC
Q 009272 204 IIDQNSQRHTAADLLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGS 283 (538)
Q Consensus 204 ~~~~~g~r~~~~~~l~~~~~~~~~i~~~~~V~~I~~~~~~~~~~~~~gV~~~~~~g~~~~~~~~~~~a~~VVLaaGai~t 283 (538)
.++.+|...-...+...+++.|++|+++++|++|..+++ ++.+|.+. +|+. + .++.||+|+|...+
T Consensus 222 ~~~~gG~~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~~~-----~~~gv~~~--~g~~--~-----~ad~vV~a~~~~~~ 287 (493)
T TIGR02730 222 NYPKGGVGQIAESLVKGLEKHGGQIRYRARVTKIILENG-----KAVGVKLA--DGEK--I-----YAKRIVSNATRWDT 287 (493)
T ss_pred ecCCChHHHHHHHHHHHHHHCCCEEEeCCeeeEEEecCC-----cEEEEEeC--CCCE--E-----EcCEEEECCChHHH
Confidence 444555543333355667778999999999999998766 88898875 4543 2 36899999998766
Q ss_pred HHHHH
Q 009272 284 PQLLM 288 (538)
Q Consensus 284 p~lLl 288 (538)
-..|+
T Consensus 288 ~~~Ll 292 (493)
T TIGR02730 288 FGKLL 292 (493)
T ss_pred HHHhC
Confidence 65444
No 106
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.56 E-value=2.3e-07 Score=93.10 Aligned_cols=48 Identities=19% Similarity=0.416 Sum_probs=36.3
Q ss_pred cCCCCeEEEeccEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCceEEEcCCCcCC
Q 009272 221 ANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGS 283 (538)
Q Consensus 221 ~~~~~~~i~~~~~V~~I~~~~~~~~~~~~~gV~~~~~~g~~~~~~~~~~~a~~VVLaaGai~t 283 (538)
...+|++|+ +.+|+.|..+++ ++.||... +|+. + .++.||||+|.+.+
T Consensus 106 ~~~~nl~i~-~~~V~~l~~e~~-----~v~GV~~~--~g~~--~-----~a~~vVlaTGtfl~ 153 (392)
T PF01134_consen 106 ESHPNLTII-QGEVTDLIVENG-----KVKGVVTK--DGEE--I-----EADAVVLATGTFLN 153 (392)
T ss_dssp HTSTTEEEE-ES-EEEEEECTT-----EEEEEEET--TSEE--E-----EECEEEE-TTTGBT
T ss_pred hcCCCeEEE-EcccceEEecCC-----eEEEEEeC--CCCE--E-----ecCEEEEecccccC
Confidence 456899996 679999999887 99999875 5653 2 37999999999443
No 107
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=98.56 E-value=8.1e-07 Score=92.96 Aligned_cols=37 Identities=32% Similarity=0.526 Sum_probs=33.8
Q ss_pred CCCCccEEEECCCCchHHHhhhhcC-CCeEEEEeccCC
Q 009272 43 PVSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 79 (538)
Q Consensus 43 ~~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (538)
+....+|+|||+|++|+++|.+|.+ |.+|+|+|+++.
T Consensus 7 ~~~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~ 44 (461)
T PLN02172 7 PINSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQ 44 (461)
T ss_pred CCCCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCC
Confidence 3456899999999999999999999 999999999986
No 108
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=98.54 E-value=1.7e-07 Score=91.58 Aligned_cols=64 Identities=19% Similarity=0.278 Sum_probs=47.8
Q ss_pred hcCCCCeEEEeccEEEEEEecCCCCCCCeEEEEEEEe----CCCCe-------EEEEeccCCCceEEEcCCCcCC--HHH
Q 009272 220 YANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRD----ATDAE-------HIAYLRNGPKNEIIVSAGALGS--PQL 286 (538)
Q Consensus 220 ~~~~~~~~i~~~~~V~~I~~~~~~~~~~~~~gV~~~~----~~g~~-------~~~~~~~~~a~~VVLaaGai~t--p~l 286 (538)
.++..|++|..+..+.++++++++ .|.||.+.| ++|.. ..+ .++.-|+|-|+-++ -++
T Consensus 192 kAEe~GvEiyPg~aaSevly~edg----sVkGiaT~D~GI~k~G~pKd~FerGme~-----hak~TifAEGc~G~Lskqi 262 (621)
T KOG2415|consen 192 KAEELGVEIYPGFAASEVLYDEDG----SVKGIATNDVGISKDGAPKDTFERGMEF-----HAKVTIFAEGCHGSLSKQI 262 (621)
T ss_pred HHHhhCceeccccchhheeEcCCC----cEeeEeeccccccCCCCcccccccccee-----cceeEEEeccccchhHHHH
Confidence 677889999999999999999887 899998875 23321 223 47889999888764 455
Q ss_pred HHHcCC
Q 009272 287 LMLSGV 292 (538)
Q Consensus 287 Ll~SGi 292 (538)
+.+-++
T Consensus 263 ~kkf~L 268 (621)
T KOG2415|consen 263 IKKFDL 268 (621)
T ss_pred HHHhCc
Confidence 555444
No 109
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.54 E-value=6.6e-07 Score=94.53 Aligned_cols=34 Identities=26% Similarity=0.447 Sum_probs=31.9
Q ss_pred CCccEEEECCCCchHHHhhhhcC-CCeEEEEeccC
Q 009272 45 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD 78 (538)
Q Consensus 45 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (538)
.+||+||||+|++|+.+|.+|++ |++|+|||++.
T Consensus 3 ~~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~~ 37 (466)
T PRK07818 3 THYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKKY 37 (466)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCC
Confidence 46999999999999999999999 99999999874
No 110
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.52 E-value=3e-07 Score=87.06 Aligned_cols=51 Identities=24% Similarity=0.392 Sum_probs=43.0
Q ss_pred CCeEEEeccEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCceEEEcCCCcCCH
Q 009272 224 SGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSP 284 (538)
Q Consensus 224 ~~~~i~~~~~V~~I~~~~~~~~~~~~~gV~~~~~~g~~~~~~~~~~~a~~VVLaaGai~tp 284 (538)
.-++|..+++|++|..+++ ++.||++.|.+|+...+ ..+.||+|+|+++-.
T Consensus 158 e~~ki~~nskvv~il~n~g-----kVsgVeymd~sgek~~~-----~~~~VVlatGGf~ys 208 (477)
T KOG2404|consen 158 ELVKILLNSKVVDILRNNG-----KVSGVEYMDASGEKSKI-----IGDAVVLATGGFGYS 208 (477)
T ss_pred HHHhhhhcceeeeeecCCC-----eEEEEEEEcCCCCccce-----ecCceEEecCCcCcC
Confidence 3589999999999996655 99999999988876555 379999999999863
No 111
>PLN02507 glutathione reductase
Probab=98.52 E-value=5.8e-07 Score=95.36 Aligned_cols=33 Identities=30% Similarity=0.355 Sum_probs=31.1
Q ss_pred CCCccEEEECCCCchHHHhhhhcC-CCeEEEEec
Q 009272 44 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLER 76 (538)
Q Consensus 44 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~ 76 (538)
..+||+||||+|++|..+|.+|++ |++|+|+|+
T Consensus 23 ~~~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~ 56 (499)
T PLN02507 23 HYDFDLFVIGAGSGGVRAARFSANFGAKVGICEL 56 (499)
T ss_pred ccccCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 447999999999999999999999 999999996
No 112
>PLN02985 squalene monooxygenase
Probab=98.51 E-value=3.2e-06 Score=89.78 Aligned_cols=37 Identities=30% Similarity=0.448 Sum_probs=33.6
Q ss_pred CCCCccEEEECCCCchHHHhhhhcC-CCeEEEEeccCC
Q 009272 43 PVSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 79 (538)
Q Consensus 43 ~~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (538)
....+||||||+|++|+++|..|++ |.+|+|+||...
T Consensus 40 ~~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~ 77 (514)
T PLN02985 40 KDGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLR 77 (514)
T ss_pred cCCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCC
Confidence 3557999999999999999999999 999999999753
No 113
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.49 E-value=7e-07 Score=94.27 Aligned_cols=36 Identities=33% Similarity=0.479 Sum_probs=33.0
Q ss_pred CCCccEEEECCCCchHHHhhhhcC-CCeEEEEeccCC
Q 009272 44 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 79 (538)
Q Consensus 44 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (538)
...|||||||+|++|+.+|.+|++ |++|+|+|+++.
T Consensus 3 ~~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~ 39 (461)
T PRK05249 3 MYDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRN 39 (461)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCEEEEEecccc
Confidence 346999999999999999999999 999999999754
No 114
>PRK06185 hypothetical protein; Provisional
Probab=98.49 E-value=1.1e-06 Score=91.36 Aligned_cols=37 Identities=32% Similarity=0.505 Sum_probs=33.9
Q ss_pred CCCCccEEEECCCCchHHHhhhhcC-CCeEEEEeccCC
Q 009272 43 PVSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 79 (538)
Q Consensus 43 ~~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (538)
+..+|||+|||+|++|+++|+.|++ |.+|+|||+.+.
T Consensus 3 ~~~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~ 40 (407)
T PRK06185 3 EVETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHAD 40 (407)
T ss_pred ccccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 3567999999999999999999999 999999999863
No 115
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=98.45 E-value=1.6e-06 Score=89.55 Aligned_cols=37 Identities=32% Similarity=0.503 Sum_probs=34.1
Q ss_pred CCCCccEEEECCCCchHHHhhhhcC-CCeEEEEeccCC
Q 009272 43 PVSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 79 (538)
Q Consensus 43 ~~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (538)
+...+||+|||+|++|+++|+.|++ |.+|+|||+.+.
T Consensus 3 ~~~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~ 40 (392)
T PRK08773 3 RRSRRDAVIVGGGVVGAACALALADAGLSVALVEGREP 40 (392)
T ss_pred CCCCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCC
Confidence 3567999999999999999999999 999999999864
No 116
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=98.45 E-value=2e-07 Score=86.79 Aligned_cols=60 Identities=18% Similarity=0.349 Sum_probs=35.7
Q ss_pred HHh-hcCCCCeEEEeccEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCceEEEcCCCcCCHHHHHHcC
Q 009272 217 LLE-YANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSG 291 (538)
Q Consensus 217 ~l~-~~~~~~~~i~~~~~V~~I~~~~~~~~~~~~~gV~~~~~~g~~~~~~~~~~~a~~VVLaaGai~tp~lLl~SG 291 (538)
|+. .+++.+++++++++|+++..+++ + .-|.+. +++ ++ .++.||+|+|.+..|+.+..-|
T Consensus 87 yl~~~~~~~~l~i~~~~~V~~v~~~~~-----~-w~v~~~--~~~--~~-----~a~~VVlAtG~~~~p~~p~~~g 147 (203)
T PF13738_consen 87 YLQEYAERFGLEIRFNTRVESVRRDGD-----G-WTVTTR--DGR--TI-----RADRVVLATGHYSHPRIPDIPG 147 (203)
T ss_dssp HHHHHHHHTTGGEETS--EEEEEEETT-----T-EEEEET--TS---EE-----EEEEEEE---SSCSB---S-TT
T ss_pred HHHHHHhhcCcccccCCEEEEEEEecc-----E-EEEEEE--ecc--ee-----eeeeEEEeeeccCCCCcccccc
Confidence 444 55667888999999999999877 4 335443 452 23 3699999999999998766443
No 117
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.43 E-value=1.1e-06 Score=92.73 Aligned_cols=34 Identities=35% Similarity=0.499 Sum_probs=32.1
Q ss_pred CCccEEEECCCCchHHHhhhhcC-CCeEEEEeccC
Q 009272 45 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD 78 (538)
Q Consensus 45 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (538)
.+||+||||+|++|+.+|.+|++ |++|+|+|++.
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~ 37 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK 37 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc
Confidence 46999999999999999999999 99999999875
No 118
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=98.41 E-value=1.1e-06 Score=86.74 Aligned_cols=33 Identities=42% Similarity=0.675 Sum_probs=31.7
Q ss_pred ccEEEECCCCchHHHhhhhcC-CCeEEEEeccCC
Q 009272 47 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 79 (538)
Q Consensus 47 ~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (538)
|||+|||+|++|+++|+.|++ |.+|+|||+.+.
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~ 34 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSF 34 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCC
Confidence 799999999999999999999 999999999975
No 119
>PRK07208 hypothetical protein; Provisional
Probab=98.40 E-value=3.9e-06 Score=89.15 Aligned_cols=40 Identities=28% Similarity=0.306 Sum_probs=36.0
Q ss_pred CCCCccEEEECCCCchHHHhhhhcC-CCeEEEEeccCCCCC
Q 009272 43 PVSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSPYG 82 (538)
Q Consensus 43 ~~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~~~ 82 (538)
|++..||||||+|++|+++|++|++ |.+|+|+|+.+....
T Consensus 1 ~~~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG 41 (479)
T PRK07208 1 MTNKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGG 41 (479)
T ss_pred CCCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCc
Confidence 4567899999999999999999999 999999999887654
No 120
>PRK06847 hypothetical protein; Provisional
Probab=98.40 E-value=1.7e-06 Score=88.86 Aligned_cols=36 Identities=25% Similarity=0.419 Sum_probs=33.0
Q ss_pred CCCccEEEECCCCchHHHhhhhcC-CCeEEEEeccCC
Q 009272 44 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 79 (538)
Q Consensus 44 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (538)
.+..||+|||+|++|+++|..|++ |.+|+|+|+.+.
T Consensus 2 ~~~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~ 38 (375)
T PRK06847 2 AAVKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPE 38 (375)
T ss_pred CCcceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 456899999999999999999999 999999999864
No 121
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.38 E-value=2.7e-06 Score=88.53 Aligned_cols=37 Identities=32% Similarity=0.548 Sum_probs=34.1
Q ss_pred CCCccEEEECCCCchHHHhhhhcC-CCeEEEEeccCCC
Q 009272 44 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSP 80 (538)
Q Consensus 44 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~ 80 (538)
...|||+|||+|++|+++|..|++ |.+|+|+|+.+..
T Consensus 16 ~~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~ 53 (415)
T PRK07364 16 SLTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAE 53 (415)
T ss_pred ccccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCcc
Confidence 457999999999999999999999 9999999999753
No 122
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=98.37 E-value=3.8e-06 Score=87.53 Aligned_cols=37 Identities=27% Similarity=0.459 Sum_probs=34.0
Q ss_pred CCCCccEEEECCCCchHHHhhhhcC-CCe-EEEEeccCC
Q 009272 43 PVSYYDYIVIGGGTAGCPLAASLSQ-NAS-VLLLERGDS 79 (538)
Q Consensus 43 ~~~~~DvIIVGsG~aG~~~A~~La~-g~~-VlvlE~G~~ 79 (538)
..+.+||+|||+|.+|+++|++|.+ |.. ++|+||...
T Consensus 5 ~~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~ 43 (443)
T COG2072 5 VATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDD 43 (443)
T ss_pred cCCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCC
Confidence 4568999999999999999999999 876 999999986
No 123
>PLN02697 lycopene epsilon cyclase
Probab=98.37 E-value=2.1e-06 Score=90.85 Aligned_cols=34 Identities=35% Similarity=0.419 Sum_probs=31.5
Q ss_pred CCccEEEECCCCchHHHhhhhcC-CCeEEEEeccC
Q 009272 45 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD 78 (538)
Q Consensus 45 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (538)
..|||||||+|++|+++|..|++ |++|+|||++.
T Consensus 107 ~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~ 141 (529)
T PLN02697 107 GTLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDL 141 (529)
T ss_pred CcccEEEECcCHHHHHHHHHHHhCCCcEEEecCcc
Confidence 46999999999999999999999 99999999863
No 124
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=98.36 E-value=2.8e-06 Score=87.58 Aligned_cols=31 Identities=45% Similarity=0.805 Sum_probs=30.3
Q ss_pred ccEEEECCCCchHHHhhhhcC-CCeEEEEecc
Q 009272 47 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERG 77 (538)
Q Consensus 47 ~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G 77 (538)
|||||||+|++|+++|+.|++ |.+|+|||+.
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~ 32 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERA 32 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 799999999999999999999 9999999997
No 125
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=98.35 E-value=4.1e-06 Score=86.41 Aligned_cols=35 Identities=37% Similarity=0.595 Sum_probs=32.9
Q ss_pred CCccEEEECCCCchHHHhhhhcC-CCeEEEEeccCC
Q 009272 45 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 79 (538)
Q Consensus 45 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (538)
..|||||||+|++|+++|+.|++ |.+|+|+|+++.
T Consensus 4 ~~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~ 39 (388)
T PRK07608 4 MKFDVVVVGGGLVGASLALALAQSGLRVALLAPRAP 39 (388)
T ss_pred ccCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCC
Confidence 36899999999999999999999 999999999975
No 126
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.34 E-value=7e-06 Score=88.55 Aligned_cols=58 Identities=17% Similarity=0.183 Sum_probs=46.4
Q ss_pred HHhhcCCCCeEEEeccEEEEEEecCCCCCCCeEEEEEEEe-CCCCeEEEEeccCCCceEEEcCCCcCC
Q 009272 217 LLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRD-ATDAEHIAYLRNGPKNEIIVSAGALGS 283 (538)
Q Consensus 217 ~l~~~~~~~~~i~~~~~V~~I~~~~~~~~~~~~~gV~~~~-~~g~~~~~~~~~~~a~~VVLaaGai~t 283 (538)
+...+.+.|++|+.++.+++|+.++++ +|+||.+.+ .+|+.+.+ .+|.||||+|+++.
T Consensus 132 L~~~~~~~gi~i~~~~~~~~Li~~~~g----~v~Gv~~~~~~~g~~~~i-----~AkaVVLATGG~~~ 190 (570)
T PRK05675 132 LYQGNLKNGTTFLNEWYAVDLVKNQDG----AVVGVIAICIETGETVYI-----KSKATVLATGGAGR 190 (570)
T ss_pred HHHHHhccCCEEEECcEEEEEEEcCCC----eEEEEEEEEcCCCcEEEE-----ecCeEEECCCCccc
Confidence 444566789999999999999987554 999999865 45665555 58999999999885
No 127
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=98.33 E-value=1.7e-06 Score=89.61 Aligned_cols=76 Identities=18% Similarity=0.194 Sum_probs=56.0
Q ss_pred eeeeeCCCCccccHHH---HHhhcCCCCeEEEeccEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCceEEEc
Q 009272 201 GGTIIDQNSQRHTAAD---LLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVS 277 (538)
Q Consensus 201 ~~~~~~~~g~r~~~~~---~l~~~~~~~~~i~~~~~V~~I~~~~~~~~~~~~~gV~~~~~~g~~~~~~~~~~~a~~VVLa 277 (538)
+.-+.+.||.-.+... |...|++.|+.|+.+|.|++|....+ +..||++. .|.. .+..||-|
T Consensus 174 g~Ly~P~DG~~DP~~lC~ala~~A~~~GA~viE~cpV~~i~~~~~-----~~~gVeT~--~G~i--------et~~~VNa 238 (856)
T KOG2844|consen 174 GGLYSPGDGVMDPAGLCQALARAASALGALVIENCPVTGLHVETD-----KFGGVETP--HGSI--------ETECVVNA 238 (856)
T ss_pred eeeecCCCcccCHHHHHHHHHHHHHhcCcEEEecCCcceEEeecC-----Cccceecc--Ccce--------ecceEEec
Confidence 3345567887777643 55578889999999999999998877 55588886 5654 46899999
Q ss_pred CCCcCCHHHHHHcCC
Q 009272 278 AGALGSPQLLMLSGV 292 (538)
Q Consensus 278 aGai~tp~lLl~SGi 292 (538)
||.+. ..+-.++|+
T Consensus 239 aGvWA-r~Vg~m~gv 252 (856)
T KOG2844|consen 239 AGVWA-REVGAMAGV 252 (856)
T ss_pred hhHHH-HHhhhhcCC
Confidence 99865 444455553
No 128
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=98.31 E-value=3.3e-06 Score=83.76 Aligned_cols=79 Identities=18% Similarity=0.167 Sum_probs=59.1
Q ss_pred eeeCCCCccccHHHHHhhcCCCCeEEEeccEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCceEEEcCCCcC
Q 009272 203 TIIDQNSQRHTAADLLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALG 282 (538)
Q Consensus 203 ~~~~~~g~r~~~~~~l~~~~~~~~~i~~~~~V~~I~~~~~~~~~~~~~gV~~~~~~g~~~~~~~~~~~a~~VVLaaGai~ 282 (538)
..++.+|.-..+..+.+.+++.|.+|++++.|..|+.|++ ++.||.+. +|++.+ +|.||-.|+-+.
T Consensus 256 ~~Yp~GG~Gavs~aia~~~~~~GaeI~tka~Vq~Illd~g-----ka~GV~L~--dG~ev~-------sk~VvSNAt~~~ 321 (561)
T KOG4254|consen 256 WGYPRGGMGAVSFAIAEGAKRAGAEIFTKATVQSILLDSG-----KAVGVRLA--DGTEVR-------SKIVVSNATPWD 321 (561)
T ss_pred ccCCCCChhHHHHHHHHHHHhccceeeehhhhhheeccCC-----eEEEEEec--CCcEEE-------eeeeecCCchHH
Confidence 3344555444444466778899999999999999999996 99999998 676532 588999999988
Q ss_pred CHHHHHHcCCCCh
Q 009272 283 SPQLLMLSGVGPA 295 (538)
Q Consensus 283 tp~lLl~SGig~~ 295 (538)
|-.-|+.-+.-|.
T Consensus 322 Tf~kLlp~e~LPe 334 (561)
T KOG4254|consen 322 TFEKLLPGEALPE 334 (561)
T ss_pred HHHHhCCCccCCc
Confidence 8766665544333
No 129
>PRK07045 putative monooxygenase; Reviewed
Probab=98.30 E-value=7.4e-06 Score=84.50 Aligned_cols=37 Identities=32% Similarity=0.416 Sum_probs=34.0
Q ss_pred CCCccEEEECCCCchHHHhhhhcC-CCeEEEEeccCCC
Q 009272 44 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSP 80 (538)
Q Consensus 44 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~ 80 (538)
...+||+|||+|++|+++|..|++ |.+|+|+|+.+..
T Consensus 3 ~~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~ 40 (388)
T PRK07045 3 NNPVDVLINGSGIAGVALAHLLGARGHSVTVVERAARN 40 (388)
T ss_pred CceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcc
Confidence 357999999999999999999999 9999999999853
No 130
>PRK06126 hypothetical protein; Provisional
Probab=98.30 E-value=1.3e-05 Score=86.51 Aligned_cols=36 Identities=33% Similarity=0.581 Sum_probs=33.1
Q ss_pred CCCccEEEECCCCchHHHhhhhcC-CCeEEEEeccCC
Q 009272 44 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 79 (538)
Q Consensus 44 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (538)
..++||+|||+|++|+++|..|++ |.+|+|+||.+.
T Consensus 5 ~~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~ 41 (545)
T PRK06126 5 TSETPVLIVGGGPVGLALALDLGRRGVDSILVERKDG 41 (545)
T ss_pred CccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 447999999999999999999999 999999998864
No 131
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=98.28 E-value=9.8e-06 Score=77.62 Aligned_cols=36 Identities=33% Similarity=0.536 Sum_probs=31.8
Q ss_pred CCccEEEECCCCchHHHhhhhcC-----CCeEEEEeccCCC
Q 009272 45 SYYDYIVIGGGTAGCPLAASLSQ-----NASVLLLERGDSP 80 (538)
Q Consensus 45 ~~~DvIIVGsG~aG~~~A~~La~-----g~~VlvlE~G~~~ 80 (538)
...||+|||+|..|+++|+-|.+ |.+|+|+|+..-+
T Consensus 85 ~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddty 125 (509)
T KOG2853|consen 85 YHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTY 125 (509)
T ss_pred cccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcc
Confidence 36899999999999999998865 6899999999754
No 132
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=98.27 E-value=4.2e-06 Score=87.90 Aligned_cols=32 Identities=25% Similarity=0.560 Sum_probs=27.5
Q ss_pred CccEEEECCCCchHHHhhhhcCCCeEEEEeccC
Q 009272 46 YYDYIVIGGGTAGCPLAASLSQNASVLLLERGD 78 (538)
Q Consensus 46 ~~DvIIVGsG~aG~~~A~~La~g~~VlvlE~G~ 78 (538)
+||+||||+|++|..+|.++ .|+||+|||++.
T Consensus 2 ~yD~vvIG~G~~g~~aa~~~-~g~~V~lie~~~ 33 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPRF-ADKRIAIVEKGT 33 (452)
T ss_pred CcCEEEECCCHHHHHHHHHH-CCCeEEEEeCCC
Confidence 69999999999998886554 299999999865
No 133
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=98.26 E-value=5.9e-06 Score=87.51 Aligned_cols=33 Identities=45% Similarity=0.723 Sum_probs=31.0
Q ss_pred ccEEEECCCCchHHHhhhhcC-CCeEEEEeccCC
Q 009272 47 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 79 (538)
Q Consensus 47 ~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (538)
|||||||+|.+|+.+|..+++ |.+|+|||+...
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~ 34 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLD 34 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCEEEEecccc
Confidence 799999999999999999999 999999999753
No 134
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=98.25 E-value=9.7e-06 Score=75.49 Aligned_cols=33 Identities=27% Similarity=0.481 Sum_probs=30.7
Q ss_pred ccEEEECCCCchHHHhhhhcC-CCeEEEEeccCC
Q 009272 47 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 79 (538)
Q Consensus 47 ~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (538)
-+++|||+|++|+++|+.|++ |.+|+|+|||.-
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~G 35 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALREAGREVTVFEKGRG 35 (331)
T ss_pred CcEEEEccchHHHHHHHHHHhcCcEEEEEEcCCC
Confidence 369999999999999999999 999999999963
No 135
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.25 E-value=2.7e-06 Score=91.65 Aligned_cols=35 Identities=34% Similarity=0.639 Sum_probs=32.5
Q ss_pred CCCccEEEECCCCchHHHhhhhcC-CCeEEEEeccC
Q 009272 44 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD 78 (538)
Q Consensus 44 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (538)
.+.|||+|||||+||+.+|.+|++ |++|+|+|++.
T Consensus 2 ~~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~ 37 (555)
T TIGR03143 2 EEIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDD 37 (555)
T ss_pred CCcCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Confidence 456999999999999999999999 99999999864
No 136
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=98.23 E-value=1.2e-05 Score=86.44 Aligned_cols=37 Identities=35% Similarity=0.493 Sum_probs=33.9
Q ss_pred CCCccEEEECCCCchHHHhhhhcC-CCeEEEEeccCCC
Q 009272 44 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSP 80 (538)
Q Consensus 44 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~ 80 (538)
...+||+|||+|++|+++|..|++ |.+|+||||.+..
T Consensus 8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~ 45 (538)
T PRK06183 8 AHDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTL 45 (538)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 456999999999999999999999 9999999999753
No 137
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=98.23 E-value=1.7e-05 Score=79.44 Aligned_cols=200 Identities=15% Similarity=0.118 Sum_probs=100.9
Q ss_pred CCCCCccEEEECCCCchHHHhhhhcC------CCeEEEEeccCCCCCCCCcccchhhhhhhcCCCCCCCCccccC-CCce
Q 009272 42 KPVSYYDYIVIGGGTAGCPLAASLSQ------NASVLLLERGDSPYGNPNITNSGSFSAELADLSPTSPSQRFIS-EDGV 114 (538)
Q Consensus 42 ~~~~~~DvIIVGsG~aG~~~A~~La~------g~~VlvlE~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 114 (538)
.|...||+||||+|++|+.+|++++. ..+|++||.|.......-.. .. ..+.... -...
T Consensus 14 ~~~~~~~vvivgag~~g~f~a~~~s~~ar~~~~~~i~~vd~g~~~~~r~~~~----~~----------~~~~~c~~~~~~ 79 (486)
T COG2509 14 LMNAALDVVIVGAGPAGLFAAYELSGDARKVPILKIYVVDVGLDIEQRLCPK----DE----------KKLEKCPKCDPC 79 (486)
T ss_pred HhhhccceEEECCCchHHHHHHHHhhhcccCCceEEEEEEeccchhhhhccc----cc----------cchhhcCCCCCc
Confidence 35668999999999999999999985 36899999998643211000 00 0000000 0011
Q ss_pred eecCcccccchhhhcccccc-cCCh-hhhhc--CCCCh-hhhhhhhhhhccccccC--CCCchhHHHHH-HHHHHcCCCC
Q 009272 115 VSTRARVLGGGTCINAGFYT-RAEP-YYARE--AGWDG-RLVNESYQWVEKKVVFR--PPMQRWQSALR-DGLVEVGVLP 186 (538)
Q Consensus 115 ~~~~g~~lGG~s~~n~~~~~-r~~~-~~~~~--~gw~~-~~l~~~~~~~e~~~~~~--~~~~~~~~~~~-~~~~~~g~~~ 186 (538)
. --.++||...+..+.+. +|.. .+++. .+|.. -++..+.+..--..+.. ....+..+.+. ..++++|...
T Consensus 80 ~--I~~G~GgaG~fs~g~lnl~P~~Gg~~~~~~~d~~~~~~~~~~vd~~~vqfG~~g~~~~~~~~e~ikd~e~~aa~a~~ 157 (486)
T COG2509 80 P--IVIGFGGAGLFSDGILNLRPIRGGDVHERTKDTDEFWELVNLVDESNVQFGAPGAGTFSDLTEQIKDIEFRAAGAGE 157 (486)
T ss_pred e--eEecccccccccccceecccccccchhhhhCChHHHHHHHhccchhheecCCCcCcccCCchhhhhHHHHHHhCCCc
Confidence 1 12358888888877654 3322 01111 11111 01111111110000000 01111223333 2233444321
Q ss_pred CCCCccCCCCceeeeeeeeCCCCccccHHHHHhhcCCCCeEEEeccEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEe
Q 009272 187 YNGFTYDHLYGTKIGGTIIDQNSQRHTAADLLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYL 266 (538)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~g~r~~~~~~l~~~~~~~~~i~~~~~V~~I~~~~~~~~~~~~~gV~~~~~~g~~~~~~~ 266 (538)
. +-.....+.| .+..+.....+....+..|++++++++|+.|.+.++ .+.+|... +|...
T Consensus 158 e----il~~~~rHiG-----TD~l~~vvkni~~~l~~~G~ei~f~t~VeDi~~~~~-----~~~~v~~~--~g~~i---- 217 (486)
T COG2509 158 E----ILPIYQRHIG-----TDILPKVVKNIREYLESLGGEIRFNTEVEDIEIEDN-----EVLGVKLT--KGEEI---- 217 (486)
T ss_pred e----eeeccccccC-----ccchHHHHHHHHHHHHhcCcEEEeeeEEEEEEecCC-----ceEEEEcc--CCcEE----
Confidence 0 0000000111 122233333344456677999999999999999887 67777765 56432
Q ss_pred ccCCCceEEEcCCC
Q 009272 267 RNGPKNEIIVSAGA 280 (538)
Q Consensus 267 ~~~~a~~VVLaaGa 280 (538)
.++.||||-|=
T Consensus 218 ---~~~~vvlA~Gr 228 (486)
T COG2509 218 ---EADYVVLAPGR 228 (486)
T ss_pred ---ecCEEEEccCc
Confidence 47999999994
No 138
>PTZ00058 glutathione reductase; Provisional
Probab=98.22 E-value=1.2e-06 Score=93.52 Aligned_cols=34 Identities=41% Similarity=0.646 Sum_probs=32.1
Q ss_pred CCccEEEECCCCchHHHhhhhcC-CCeEEEEeccC
Q 009272 45 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD 78 (538)
Q Consensus 45 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (538)
.+||+||||+|++|..+|.+|++ |++|+|||++.
T Consensus 47 ~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~~ 81 (561)
T PTZ00058 47 MVYDLIVIGGGSGGMAAARRAARNKAKVALVEKDY 81 (561)
T ss_pred ccccEEEECcCHHHHHHHHHHHHcCCeEEEEeccc
Confidence 47999999999999999999999 99999999874
No 139
>PRK08244 hypothetical protein; Provisional
Probab=98.22 E-value=7.2e-06 Score=87.37 Aligned_cols=34 Identities=35% Similarity=0.595 Sum_probs=32.3
Q ss_pred CccEEEECCCCchHHHhhhhcC-CCeEEEEeccCC
Q 009272 46 YYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 79 (538)
Q Consensus 46 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (538)
+|||+|||+|++|+++|..|++ |.+|+||||.+.
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~ 36 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKE 36 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 4899999999999999999999 999999999875
No 140
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.21 E-value=6.9e-07 Score=93.77 Aligned_cols=34 Identities=41% Similarity=0.709 Sum_probs=32.0
Q ss_pred CCccEEEECCCCchHHHhhhhcC-CCeEEEEeccC
Q 009272 45 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD 78 (538)
Q Consensus 45 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (538)
++|||||||+|++|..+|.+|++ |++|+|+|++.
T Consensus 1 ~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~ 35 (450)
T TIGR01421 1 KHYDYLVIGGGSGGIASARRAAEHGAKALLVEAKK 35 (450)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEecccc
Confidence 46999999999999999999999 99999999964
No 141
>PRK06116 glutathione reductase; Validated
Probab=98.21 E-value=8.6e-07 Score=93.27 Aligned_cols=35 Identities=40% Similarity=0.582 Sum_probs=32.5
Q ss_pred CCCccEEEECCCCchHHHhhhhcC-CCeEEEEeccC
Q 009272 44 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD 78 (538)
Q Consensus 44 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (538)
..+|||||||+|++|+.+|.+|++ |++|+|+|++.
T Consensus 2 ~~~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~~ 37 (450)
T PRK06116 2 TKDYDLIVIGGGSGGIASANRAAMYGAKVALIEAKR 37 (450)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccc
Confidence 457999999999999999999999 99999999874
No 142
>PRK06370 mercuric reductase; Validated
Probab=98.21 E-value=9e-07 Score=93.45 Aligned_cols=36 Identities=53% Similarity=0.761 Sum_probs=33.4
Q ss_pred CCCCccEEEECCCCchHHHhhhhcC-CCeEEEEeccC
Q 009272 43 PVSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD 78 (538)
Q Consensus 43 ~~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (538)
|..+|||||||+|++|..+|.+|++ |++|+|+|++.
T Consensus 2 ~~~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~ 38 (463)
T PRK06370 2 PAQRYDAIVIGAGQAGPPLAARAAGLGMKVALIERGL 38 (463)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhCCCeEEEEecCc
Confidence 4567999999999999999999999 99999999975
No 143
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=98.20 E-value=7.9e-07 Score=90.18 Aligned_cols=35 Identities=34% Similarity=0.628 Sum_probs=30.8
Q ss_pred CccEEEECCCCchHHHhhhhcC-CCeEEEEeccCCC
Q 009272 46 YYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSP 80 (538)
Q Consensus 46 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~ 80 (538)
+|||||||+|++|+++|..|++ |.+|+|+|+.+..
T Consensus 1 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~ 36 (356)
T PF01494_consen 1 EYDVAIVGAGPAGLAAALALARAGIDVTIIERRPDP 36 (356)
T ss_dssp EEEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSC
T ss_pred CceEEEECCCHHHHHHHHHHHhcccccccchhcccc
Confidence 4899999999999999999999 9999999998764
No 144
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.19 E-value=6.5e-06 Score=79.08 Aligned_cols=35 Identities=40% Similarity=0.569 Sum_probs=32.8
Q ss_pred CCCccEEEECCCCchHHHhhhhcC-CCeEEEEeccC
Q 009272 44 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD 78 (538)
Q Consensus 44 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (538)
.+.||++|||+|.+|..+|.++++ |.||.|+|..-
T Consensus 18 ~k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f 53 (478)
T KOG0405|consen 18 VKDFDYLVIGGGSGGVASARRAASHGAKVALCELPF 53 (478)
T ss_pred ccccceEEEcCCcchhHHhHHHHhcCceEEEEecCC
Confidence 458999999999999999999999 99999999884
No 145
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.19 E-value=1.4e-05 Score=82.91 Aligned_cols=33 Identities=36% Similarity=0.625 Sum_probs=31.7
Q ss_pred CccEEEECCCCchHHHhhhhcC-CCeEEEEeccC
Q 009272 46 YYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD 78 (538)
Q Consensus 46 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (538)
.|||+|||+|++|+++|+.|++ |.+|+|+|+.+
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~ 35 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQGSGLEVLLLDGGP 35 (405)
T ss_pred CccEEEECccHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 5899999999999999999999 99999999986
No 146
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.17 E-value=1e-05 Score=83.89 Aligned_cols=33 Identities=30% Similarity=0.545 Sum_probs=31.3
Q ss_pred ccEEEECCCCchHHHhhhhcC-C--CeEEEEeccCC
Q 009272 47 YDYIVIGGGTAGCPLAASLSQ-N--ASVLLLERGDS 79 (538)
Q Consensus 47 ~DvIIVGsG~aG~~~A~~La~-g--~~VlvlE~G~~ 79 (538)
|||||||+|++|+++|..|++ | .+|+|+|+.+.
T Consensus 2 ~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~ 37 (403)
T PRK07333 2 CDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPA 37 (403)
T ss_pred CCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCc
Confidence 899999999999999999999 7 89999999974
No 147
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.16 E-value=1.1e-06 Score=90.77 Aligned_cols=35 Identities=40% Similarity=0.639 Sum_probs=32.9
Q ss_pred CCCccEEEECCCCchHHHhhhhcC-CCeEEEEeccC
Q 009272 44 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD 78 (538)
Q Consensus 44 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (538)
..+||+||||+|++|..+|.+|++ |.||+|+|+++
T Consensus 2 ~~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~ 37 (454)
T COG1249 2 MKEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGE 37 (454)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecC
Confidence 457999999999999999999999 98899999996
No 148
>PRK06834 hypothetical protein; Provisional
Probab=98.16 E-value=9.3e-06 Score=85.98 Aligned_cols=34 Identities=29% Similarity=0.473 Sum_probs=32.2
Q ss_pred CccEEEECCCCchHHHhhhhcC-CCeEEEEeccCC
Q 009272 46 YYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 79 (538)
Q Consensus 46 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (538)
.+||||||+|++|+++|..|++ |.+|+|||+.+.
T Consensus 3 ~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~ 37 (488)
T PRK06834 3 EHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPN 37 (488)
T ss_pred cceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 5999999999999999999999 999999999874
No 149
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=98.16 E-value=1.6e-05 Score=81.92 Aligned_cols=33 Identities=30% Similarity=0.614 Sum_probs=31.4
Q ss_pred cEEEECCCCchHHHhhhhcC-CCeEEEEeccCCC
Q 009272 48 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSP 80 (538)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~ 80 (538)
||||||+|++|+++|+.|++ |.+|+|+||.+..
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~ 34 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATPAE 34 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCcc
Confidence 89999999999999999999 9999999999864
No 150
>PRK06184 hypothetical protein; Provisional
Probab=98.15 E-value=1.6e-05 Score=84.95 Aligned_cols=35 Identities=29% Similarity=0.534 Sum_probs=32.7
Q ss_pred CCccEEEECCCCchHHHhhhhcC-CCeEEEEeccCC
Q 009272 45 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 79 (538)
Q Consensus 45 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (538)
+++||+|||+|++|+++|..|++ |.+|+||||.+.
T Consensus 2 ~~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~ 37 (502)
T PRK06184 2 TTTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPE 37 (502)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 36999999999999999999999 999999999875
No 151
>PRK08163 salicylate hydroxylase; Provisional
Probab=98.15 E-value=3.4e-06 Score=87.29 Aligned_cols=36 Identities=28% Similarity=0.479 Sum_probs=33.2
Q ss_pred CCCccEEEECCCCchHHHhhhhcC-CCeEEEEeccCC
Q 009272 44 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 79 (538)
Q Consensus 44 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (538)
....||+|||+|++|+++|..|++ |.+|+|+||.+.
T Consensus 2 ~~~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~ 38 (396)
T PRK08163 2 TKVTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAE 38 (396)
T ss_pred CCCCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcc
Confidence 346899999999999999999999 999999999874
No 152
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.14 E-value=1.2e-06 Score=91.94 Aligned_cols=33 Identities=33% Similarity=0.480 Sum_probs=31.3
Q ss_pred CccEEEECCCCchHHHhhhhcC-CCeEEEEeccC
Q 009272 46 YYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD 78 (538)
Q Consensus 46 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (538)
+||+||||+|++|..+|.+|++ |++|+|+|++.
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~ 35 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEEPR 35 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCc
Confidence 6999999999999999999999 99999999953
No 153
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=98.14 E-value=1.5e-05 Score=82.39 Aligned_cols=34 Identities=29% Similarity=0.394 Sum_probs=32.3
Q ss_pred CccEEEECCCCchHHHhhhhcC-CCeEEEEeccCC
Q 009272 46 YYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 79 (538)
Q Consensus 46 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (538)
.+||+|||+|++|+++|..|++ |.+|+|+|+.+.
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~ 36 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSR 36 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCc
Confidence 5899999999999999999999 999999999974
No 154
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.13 E-value=1.4e-05 Score=84.32 Aligned_cols=31 Identities=35% Similarity=0.595 Sum_probs=29.7
Q ss_pred cEEEECCCCchHHHhhhhcC-CCeEEEEeccC
Q 009272 48 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGD 78 (538)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (538)
|+||||+|++|+.+|..|++ |.+|+|+|++.
T Consensus 3 ~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~ 34 (466)
T PRK07845 3 RIVIIGGGPGGYEAALVAAQLGADVTVIERDG 34 (466)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEEccC
Confidence 79999999999999999999 99999999875
No 155
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=98.13 E-value=2e-05 Score=76.82 Aligned_cols=35 Identities=31% Similarity=0.507 Sum_probs=32.5
Q ss_pred CCccEEEECCCCchHHHhhhhcC-CCeEEEEeccCC
Q 009272 45 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 79 (538)
Q Consensus 45 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (538)
.+||++|||+|++|-++|+++++ |++..++|+...
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~ 73 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGT 73 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCc
Confidence 58999999999999999999999 999999999653
No 156
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=98.12 E-value=8.2e-06 Score=72.93 Aligned_cols=35 Identities=26% Similarity=0.508 Sum_probs=31.4
Q ss_pred CccEEEECCCCchHHHhhhhcC---CCeEEEEeccCCC
Q 009272 46 YYDYIVIGGGTAGCPLAASLSQ---NASVLLLERGDSP 80 (538)
Q Consensus 46 ~~DvIIVGsG~aG~~~A~~La~---g~~VlvlE~G~~~ 80 (538)
+.||||||+|.+|+++||..++ +++|.+||+.-.+
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaP 113 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAP 113 (328)
T ss_pred ccceEEECCCccccceeeeeeccCCCceEEEEEeeecC
Confidence 5699999999999999999996 6899999988643
No 157
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=98.12 E-value=1.1e-05 Score=83.16 Aligned_cols=32 Identities=41% Similarity=0.609 Sum_probs=30.5
Q ss_pred cEEEECCCCchHHHhhhhcC-CCeEEEEeccCC
Q 009272 48 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 79 (538)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (538)
||||||+|++|+++|+.|++ |.+|+|||+.+.
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~ 33 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPP 33 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCC
Confidence 89999999999999999999 999999999864
No 158
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=98.11 E-value=1.9e-05 Score=81.43 Aligned_cols=32 Identities=41% Similarity=0.645 Sum_probs=31.1
Q ss_pred CccEEEECCCCchHHHhhhhcC-CCeEEEEecc
Q 009272 46 YYDYIVIGGGTAGCPLAASLSQ-NASVLLLERG 77 (538)
Q Consensus 46 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G 77 (538)
.+||+|||+|++|+++|..|++ |.+|+|||+.
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~ 34 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERA 34 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Confidence 5899999999999999999999 9999999998
No 159
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=98.11 E-value=1.9e-06 Score=64.50 Aligned_cols=29 Identities=31% Similarity=0.524 Sum_probs=27.1
Q ss_pred EECCCCchHHHhhhhcC-CCeEEEEeccCC
Q 009272 51 VIGGGTAGCPLAASLSQ-NASVLLLERGDS 79 (538)
Q Consensus 51 IVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (538)
|||+|++|+++|++|++ |.+|+|+|+.+.
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~ 30 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDR 30 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcc
Confidence 89999999999999999 999999999986
No 160
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.11 E-value=2.4e-05 Score=77.45 Aligned_cols=32 Identities=38% Similarity=0.604 Sum_probs=30.8
Q ss_pred ccEEEECCCCchHHHhhhhcC-CCeEEEEeccC
Q 009272 47 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD 78 (538)
Q Consensus 47 ~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (538)
|||+|||+|++|+.+|..|++ |.+|+|+|+++
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~ 33 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGME 33 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccC
Confidence 799999999999999999999 99999999886
No 161
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.10 E-value=2.7e-06 Score=89.17 Aligned_cols=35 Identities=46% Similarity=0.597 Sum_probs=32.6
Q ss_pred CCccEEEECCCCchHHHhhhhcC-CCeEEEEeccCC
Q 009272 45 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 79 (538)
Q Consensus 45 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (538)
++|||||||||+||+.+|.+|++ |++|+|+|+++.
T Consensus 2 ~~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~ 37 (438)
T PRK07251 2 LTYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKA 37 (438)
T ss_pred CccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCc
Confidence 36999999999999999999999 999999999863
No 162
>PRK07190 hypothetical protein; Provisional
Probab=98.10 E-value=6.2e-06 Score=87.23 Aligned_cols=35 Identities=20% Similarity=0.342 Sum_probs=32.8
Q ss_pred CCccEEEECCCCchHHHhhhhcC-CCeEEEEeccCC
Q 009272 45 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 79 (538)
Q Consensus 45 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (538)
..+||||||+|++|+++|..|++ |.+|+||||.+.
T Consensus 4 ~~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~ 39 (487)
T PRK07190 4 QVTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDG 39 (487)
T ss_pred ccceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCc
Confidence 46899999999999999999999 999999999975
No 163
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=98.09 E-value=2.2e-05 Score=80.80 Aligned_cols=33 Identities=36% Similarity=0.657 Sum_probs=31.3
Q ss_pred cEEEECCCCchHHHhhhhcC-C-CeEEEEeccCCC
Q 009272 48 DYIVIGGGTAGCPLAASLSQ-N-ASVLLLERGDSP 80 (538)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g-~~VlvlE~G~~~ 80 (538)
||||||+|++|+++|..|++ | .+|+|+|+.+..
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~ 35 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPS 35 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCcc
Confidence 89999999999999999999 9 999999999754
No 164
>PLN02546 glutathione reductase
Probab=98.08 E-value=2.4e-06 Score=91.43 Aligned_cols=33 Identities=27% Similarity=0.338 Sum_probs=31.0
Q ss_pred CCCccEEEECCCCchHHHhhhhcC-CCeEEEEec
Q 009272 44 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLER 76 (538)
Q Consensus 44 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~ 76 (538)
..+|||||||+|++|..+|.+|++ |++|+|+|+
T Consensus 77 ~~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~ 110 (558)
T PLN02546 77 HYDFDLFTIGAGSGGVRASRFASNFGASAAVCEL 110 (558)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 346999999999999999999999 999999996
No 165
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=98.08 E-value=1.8e-05 Score=81.00 Aligned_cols=32 Identities=41% Similarity=0.661 Sum_probs=30.1
Q ss_pred cEEEECCCCchHHHhhhh--cC-CCeEEEEeccCC
Q 009272 48 DYIVIGGGTAGCPLAASL--SQ-NASVLLLERGDS 79 (538)
Q Consensus 48 DvIIVGsG~aG~~~A~~L--a~-g~~VlvlE~G~~ 79 (538)
||||||+|++|+++|.+| ++ |.+|+|||+.+.
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~ 35 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPK 35 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCcc
Confidence 899999999999999999 66 899999999875
No 166
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.07 E-value=1.2e-05 Score=76.85 Aligned_cols=37 Identities=35% Similarity=0.436 Sum_probs=33.0
Q ss_pred CCCCCccEEEECCCCchHHHhhhhcC-CCeEEEEeccC
Q 009272 42 KPVSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD 78 (538)
Q Consensus 42 ~~~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (538)
....+||.||||+|.+|+++|.++|. |.+|.+|+-=.
T Consensus 15 ~~sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~ 52 (503)
T KOG4716|consen 15 FSSYDYDLIVIGGGSGGLACAKEAADLGAKVACLDFVK 52 (503)
T ss_pred cccCCccEEEEcCCcchhhHHHHHHhcCCcEEEEeecc
Confidence 34568999999999999999999999 99999998654
No 167
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.07 E-value=2.3e-06 Score=89.79 Aligned_cols=35 Identities=34% Similarity=0.562 Sum_probs=32.6
Q ss_pred CCccEEEECCCCchHHHhhhhcC-CCeEEEEeccCC
Q 009272 45 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 79 (538)
Q Consensus 45 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (538)
++|||||||||++|+.+|.+|++ |++|+|+|+++.
T Consensus 2 ~~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~ 37 (441)
T PRK08010 2 NKYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNA 37 (441)
T ss_pred CcCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCC
Confidence 36999999999999999999999 999999999863
No 168
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.07 E-value=2.4e-06 Score=90.22 Aligned_cols=33 Identities=33% Similarity=0.519 Sum_probs=30.9
Q ss_pred CccEEEECCCCchHHHhhhhcC-CCeEEEEeccC
Q 009272 46 YYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD 78 (538)
Q Consensus 46 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (538)
+||+||||+|++|+.+|.+|++ |++|+|||+..
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~ 36 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRS 36 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEecCC
Confidence 5999999999999999999999 99999999743
No 169
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.05 E-value=1.9e-05 Score=84.56 Aligned_cols=33 Identities=27% Similarity=0.466 Sum_probs=30.6
Q ss_pred CCCccEEEECCCCchHHHhhhhcC-CCeEEEEec
Q 009272 44 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLER 76 (538)
Q Consensus 44 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~ 76 (538)
...|||+|||||++|+.+|.+|++ |++|+|+|+
T Consensus 209 ~~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~ 242 (517)
T PRK15317 209 KDPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAE 242 (517)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEec
Confidence 457999999999999999999999 999999975
No 170
>PRK07588 hypothetical protein; Provisional
Probab=98.05 E-value=2.4e-05 Score=80.81 Aligned_cols=32 Identities=31% Similarity=0.387 Sum_probs=30.5
Q ss_pred cEEEECCCCchHHHhhhhcC-CCeEEEEeccCC
Q 009272 48 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 79 (538)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (538)
||+|||+|++|+++|..|++ |.+|+|+|+.+.
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~ 34 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRRYGHEPTLIERAPE 34 (391)
T ss_pred eEEEECccHHHHHHHHHHHHCCCceEEEeCCCC
Confidence 79999999999999999999 999999999864
No 171
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.03 E-value=2e-05 Score=84.22 Aligned_cols=33 Identities=27% Similarity=0.529 Sum_probs=30.5
Q ss_pred CCCccEEEECCCCchHHHhhhhcC-CCeEEEEec
Q 009272 44 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLER 76 (538)
Q Consensus 44 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~ 76 (538)
...|||+|||||++|+++|.+|++ |++|+|+|.
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~ 243 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAE 243 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEec
Confidence 457999999999999999999999 999999964
No 172
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=98.03 E-value=6.4e-05 Score=81.15 Aligned_cols=36 Identities=33% Similarity=0.548 Sum_probs=33.5
Q ss_pred CCCccEEEECCCCchHHHhhhhcC-CCeEEEEeccCC
Q 009272 44 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 79 (538)
Q Consensus 44 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (538)
...+||+|||+|++|+++|..|++ |.+|+|||+.+.
T Consensus 21 ~~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~ 57 (547)
T PRK08132 21 PARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDT 57 (547)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence 457999999999999999999999 999999999874
No 173
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.03 E-value=5e-05 Score=81.32 Aligned_cols=74 Identities=16% Similarity=0.153 Sum_probs=55.1
Q ss_pred CCccccHHH---HHhhcCCCCeEEEeccEEEEEEecCCCCCCCeEEEEEEEeC-CCCeEEEEeccCCCceEEEcCCCcCC
Q 009272 208 NSQRHTAAD---LLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDA-TDAEHIAYLRNGPKNEIIVSAGALGS 283 (538)
Q Consensus 208 ~g~r~~~~~---~l~~~~~~~~~i~~~~~V~~I~~~~~~~~~~~~~gV~~~~~-~g~~~~~~~~~~~a~~VVLaaGai~t 283 (538)
+|.-++... +...+.+.|++|+++++|++|..+++ ++++|++.+. +|+...+ .++.||+|||+ ++
T Consensus 122 dg~vdp~~l~~al~~~A~~~Ga~i~~~t~V~~i~~~~~-----~v~gv~v~~~~~g~~~~i-----~a~~VVnAaG~-wa 190 (516)
T TIGR03377 122 DGTVDPFRLVAANVLDAQEHGARIFTYTKVTGLIREGG-----RVTGVKVEDHKTGEEERI-----EAQVVINAAGI-WA 190 (516)
T ss_pred CcEECHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEECC-----EEEEEEEEEcCCCcEEEE-----EcCEEEECCCc-ch
Confidence 565443322 44567778999999999999998766 8999998753 3544444 48999999998 67
Q ss_pred HHHHHHcCC
Q 009272 284 PQLLMLSGV 292 (538)
Q Consensus 284 p~lLl~SGi 292 (538)
..|+...|+
T Consensus 191 ~~l~~~~g~ 199 (516)
T TIGR03377 191 GRIAEYAGL 199 (516)
T ss_pred HHHHHhcCC
Confidence 788877766
No 174
>PRK14694 putative mercuric reductase; Provisional
Probab=98.02 E-value=3.8e-06 Score=88.81 Aligned_cols=35 Identities=31% Similarity=0.429 Sum_probs=32.9
Q ss_pred CCCccEEEECCCCchHHHhhhhcC-CCeEEEEeccC
Q 009272 44 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD 78 (538)
Q Consensus 44 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (538)
..+|||||||+|++|+.+|.+|++ |++|+|+|++.
T Consensus 4 ~~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~~ 39 (468)
T PRK14694 4 DNNLHIAVIGSGGSAMAAALKATERGARVTLIERGT 39 (468)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEccc
Confidence 468999999999999999999999 99999999975
No 175
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.01 E-value=3.1e-06 Score=89.44 Aligned_cols=32 Identities=41% Similarity=0.702 Sum_probs=30.9
Q ss_pred ccEEEECCCCchHHHhhhhcC-CCeEEEEeccC
Q 009272 47 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD 78 (538)
Q Consensus 47 ~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (538)
||+||||+|++|..+|.+|++ |++|+|+|+++
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~ 33 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP 33 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc
Confidence 799999999999999999999 99999999976
No 176
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=98.00 E-value=3.3e-06 Score=91.59 Aligned_cols=32 Identities=25% Similarity=0.400 Sum_probs=30.9
Q ss_pred CccEEEECCCCchHHHhhhhcC-CCeEEEEecc
Q 009272 46 YYDYIVIGGGTAGCPLAASLSQ-NASVLLLERG 77 (538)
Q Consensus 46 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G 77 (538)
+||+||||+|++|..+|.++++ |+||+|||++
T Consensus 116 ~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~ 148 (659)
T PTZ00153 116 EYDVGIIGCGVGGHAAAINAMERGLKVIIFTGD 148 (659)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCC
Confidence 7999999999999999999999 9999999976
No 177
>PRK11445 putative oxidoreductase; Provisional
Probab=98.00 E-value=5.3e-05 Score=76.96 Aligned_cols=33 Identities=33% Similarity=0.573 Sum_probs=30.9
Q ss_pred ccEEEECCCCchHHHhhhhcCCCeEEEEeccCC
Q 009272 47 YDYIVIGGGTAGCPLAASLSQNASVLLLERGDS 79 (538)
Q Consensus 47 ~DvIIVGsG~aG~~~A~~La~g~~VlvlE~G~~ 79 (538)
|||+|||+|++|+++|..|++..+|+|||+.+.
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~~~~V~liE~~~~ 34 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAGKMKVIAIDKKHQ 34 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhccCCEEEEECCCc
Confidence 899999999999999999988789999999874
No 178
>PRK13748 putative mercuric reductase; Provisional
Probab=97.99 E-value=4e-06 Score=90.88 Aligned_cols=34 Identities=35% Similarity=0.427 Sum_probs=32.1
Q ss_pred CCccEEEECCCCchHHHhhhhcC-CCeEEEEeccC
Q 009272 45 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD 78 (538)
Q Consensus 45 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (538)
.+|||||||+|++|+.+|.+|++ |++|+|||++.
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~~ 131 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERGT 131 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCc
Confidence 46999999999999999999999 99999999974
No 179
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=97.98 E-value=3.1e-05 Score=73.57 Aligned_cols=39 Identities=36% Similarity=0.543 Sum_probs=34.1
Q ss_pred CCCCCCccEEEECCCCchHHHhhhhcC---CCeEEEEeccCC
Q 009272 41 AKPVSYYDYIVIGGGTAGCPLAASLSQ---NASVLLLERGDS 79 (538)
Q Consensus 41 ~~~~~~~DvIIVGsG~aG~~~A~~La~---g~~VlvlE~G~~ 79 (538)
......||.||||+|+.|++.|.+|.- +++|+|||+-..
T Consensus 43 s~s~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~ 84 (453)
T KOG2665|consen 43 SISKERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKS 84 (453)
T ss_pred ccccccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhh
Confidence 334668999999999999999999875 799999999875
No 180
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=97.97 E-value=0.00011 Score=79.32 Aligned_cols=57 Identities=14% Similarity=0.198 Sum_probs=45.6
Q ss_pred HHhhcCCCCeEEEeccEEEEEEecCCCCCCCeEEEEEEEe-CCCCeEEEEeccCCCceEEEcCCCcCC
Q 009272 217 LLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRD-ATDAEHIAYLRNGPKNEIIVSAGALGS 283 (538)
Q Consensus 217 ~l~~~~~~~~~i~~~~~V~~I~~~~~~~~~~~~~gV~~~~-~~g~~~~~~~~~~~a~~VVLaaGai~t 283 (538)
+...+.+.|++|+.++.|++|+.+++ +|+||...+ .+|+...+ .++.||||+|+++.
T Consensus 125 L~~~~~~~gi~i~~~~~~~~Li~~~g-----~v~Ga~~~~~~~g~~~~i-----~AkaVILATGG~~~ 182 (565)
T TIGR01816 125 LYQQNLKADTSFFNEYFALDLLMEDG-----ECRGVIAYCLETGEIHRF-----RAKAVVLATGGYGR 182 (565)
T ss_pred HHHHHHhCCCEEEeccEEEEEEeeCC-----EEEEEEEEEcCCCcEEEE-----EeCeEEECCCCccc
Confidence 44556678999999999999998754 999998865 35665555 47999999999875
No 181
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=97.97 E-value=1.8e-05 Score=80.91 Aligned_cols=35 Identities=43% Similarity=0.552 Sum_probs=31.0
Q ss_pred CCCccEEEECCCCchHHHhhhhcC-CCeEEEEeccC
Q 009272 44 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD 78 (538)
Q Consensus 44 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (538)
.+.|||||||+|-||+-+|...|+ |.+++||--..
T Consensus 2 ~~~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~ 37 (621)
T COG0445 2 PKEYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNL 37 (621)
T ss_pred CCCCceEEECCCccchHHHHhhhccCCeEEEEEcCC
Confidence 346999999999999999999999 99999985553
No 182
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.96 E-value=5e-06 Score=87.83 Aligned_cols=33 Identities=21% Similarity=0.422 Sum_probs=30.9
Q ss_pred CCccEEEECCCCchHHHhhhhcC--CCeEEEEecc
Q 009272 45 SYYDYIVIGGGTAGCPLAASLSQ--NASVLLLERG 77 (538)
Q Consensus 45 ~~~DvIIVGsG~aG~~~A~~La~--g~~VlvlE~G 77 (538)
++||+||||+|++|..+|.++++ |++|+|||++
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~ 36 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQ 36 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecc
Confidence 47999999999999999999999 6999999985
No 183
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=97.96 E-value=5e-06 Score=88.02 Aligned_cols=34 Identities=29% Similarity=0.391 Sum_probs=31.7
Q ss_pred CCCccEEEECCCCchHHHhhhhcC-CCeEEEEecc
Q 009272 44 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERG 77 (538)
Q Consensus 44 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G 77 (538)
..+||+||||+|++|+.+|.+|++ |.+|+|||++
T Consensus 2 ~~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~~ 36 (475)
T PRK06327 2 SKQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAW 36 (475)
T ss_pred CcceeEEEECCCHHHHHHHHHHHhCCCeEEEEecc
Confidence 457999999999999999999999 9999999983
No 184
>PRK07236 hypothetical protein; Provisional
Probab=97.96 E-value=0.00014 Score=74.91 Aligned_cols=36 Identities=31% Similarity=0.298 Sum_probs=32.9
Q ss_pred CCCccEEEECCCCchHHHhhhhcC-CCeEEEEeccCC
Q 009272 44 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 79 (538)
Q Consensus 44 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (538)
...+||||||+|++|+++|..|++ |.+|+|+|+.+.
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPT 40 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 346899999999999999999999 999999999864
No 185
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=97.96 E-value=5e-06 Score=87.86 Aligned_cols=32 Identities=41% Similarity=0.625 Sum_probs=30.5
Q ss_pred CccEEEECCCCchHHHhhhhcC-CCeEEEEecc
Q 009272 46 YYDYIVIGGGTAGCPLAASLSQ-NASVLLLERG 77 (538)
Q Consensus 46 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G 77 (538)
+|||||||||++|+.+|.+|++ |.+|+|||++
T Consensus 1 ~yDvvVIG~G~aGl~aA~~la~~G~~v~lie~~ 33 (461)
T TIGR01350 1 AYDVVVIGGGPGGYVAAIRAAQLGLKVALVEKE 33 (461)
T ss_pred CccEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Confidence 4999999999999999999999 9999999993
No 186
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=97.95 E-value=5.8e-06 Score=86.42 Aligned_cols=36 Identities=33% Similarity=0.440 Sum_probs=33.3
Q ss_pred CCCCccEEEECCCCchHHHhhhhcC-CCeEEEEeccC
Q 009272 43 PVSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD 78 (538)
Q Consensus 43 ~~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (538)
....|||||||+|++|+++|..|++ |.+|+|||+..
T Consensus 36 ~~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~ 72 (450)
T PLN00093 36 SGRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKL 72 (450)
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 3557999999999999999999999 99999999975
No 187
>PRK06753 hypothetical protein; Provisional
Probab=97.94 E-value=6.8e-05 Score=76.86 Aligned_cols=33 Identities=30% Similarity=0.476 Sum_probs=31.2
Q ss_pred cEEEECCCCchHHHhhhhcC-CCeEEEEeccCCC
Q 009272 48 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSP 80 (538)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~ 80 (538)
||||||+|++|+++|..|++ |.+|+|+|+.+..
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~ 35 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESV 35 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcc
Confidence 79999999999999999999 9999999999853
No 188
>PTZ00052 thioredoxin reductase; Provisional
Probab=97.92 E-value=6.5e-06 Score=87.47 Aligned_cols=33 Identities=33% Similarity=0.550 Sum_probs=31.1
Q ss_pred CCccEEEECCCCchHHHhhhhcC-CCeEEEEecc
Q 009272 45 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERG 77 (538)
Q Consensus 45 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G 77 (538)
..||+||||+|++|+.+|.+|++ |++|+|||++
T Consensus 4 ~~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~ 37 (499)
T PTZ00052 4 FMYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYV 37 (499)
T ss_pred cccCEEEECCCHHHHHHHHHHHhCCCeEEEEecc
Confidence 36999999999999999999999 9999999975
No 189
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=97.90 E-value=7e-06 Score=86.71 Aligned_cols=34 Identities=41% Similarity=0.633 Sum_probs=31.5
Q ss_pred CCccEEEECCCCchHHHhhhhcC-CCeEEEEeccC
Q 009272 45 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD 78 (538)
Q Consensus 45 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (538)
++||+||||||++|+.+|.+|++ |++|+|||++.
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~ 36 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAKLGKKVALIEKGP 36 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc
Confidence 45999999999999999999999 99999999943
No 190
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.89 E-value=6.9e-05 Score=77.35 Aligned_cols=34 Identities=38% Similarity=0.522 Sum_probs=32.1
Q ss_pred CccEEEECCCCchHHHhhhhcC-CCeEEEEeccCC
Q 009272 46 YYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 79 (538)
Q Consensus 46 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (538)
.-+|+|||+|++|+++|..|.+ |.+|.|+||.+.
T Consensus 6 ~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~ 40 (448)
T KOG1399|consen 6 SKDVAVIGAGPAGLAAARELLREGHEVVVFERTDD 40 (448)
T ss_pred CCceEEECcchHHHHHHHHHHHCCCCceEEEecCC
Confidence 4679999999999999999999 999999999986
No 191
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=97.89 E-value=2.8e-05 Score=82.70 Aligned_cols=32 Identities=31% Similarity=0.467 Sum_probs=27.3
Q ss_pred cEEEECCCCchHHHhhhhcC-CCeEEEEeccCC
Q 009272 48 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 79 (538)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (538)
.|+|||+|++|+++|..|.+ |.+|+++||.+.
T Consensus 3 rVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~ 35 (531)
T PF00743_consen 3 RVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDD 35 (531)
T ss_dssp EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSS
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCeEEecCCC
Confidence 38999999999999999998 999999999986
No 192
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=97.87 E-value=1.2e-05 Score=76.78 Aligned_cols=38 Identities=32% Similarity=0.662 Sum_probs=34.8
Q ss_pred ccEEEECCCCchHHHhhhhcC-CCeEEEEeccCCCCCCC
Q 009272 47 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSPYGNP 84 (538)
Q Consensus 47 ~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~~~~~ 84 (538)
||+||||||.+|+++|..|++ |++||||||-+....++
T Consensus 2 fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNa 40 (374)
T COG0562 2 FDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNA 40 (374)
T ss_pred CcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCcc
Confidence 899999999999999999999 99999999998776544
No 193
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=97.79 E-value=6.7e-05 Score=70.53 Aligned_cols=64 Identities=23% Similarity=0.321 Sum_probs=42.6
Q ss_pred HHh-hcCCCCeEEEeccEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCceEEEcCCCcCCHHHHHHcCC
Q 009272 217 LLE-YANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGV 292 (538)
Q Consensus 217 ~l~-~~~~~~~~i~~~~~V~~I~~~~~~~~~~~~~gV~~~~~~g~~~~~~~~~~~a~~VVLaaGai~tp~lLl~SGi 292 (538)
++. +.++.|++++.+ .|..+. |... |+.+|......+..+.. ...++||++|. +|++||..-+|
T Consensus 153 i~sea~k~~~V~lv~G-kv~ev~-dEk~----r~n~v~~ae~~~ti~~~-----d~~~ivvsaGP-WTskllp~~rI 217 (380)
T KOG2852|consen 153 ILSEAEKRGGVKLVFG-KVKEVS-DEKH----RINSVPKAEAEDTIIKA-----DVHKIVVSAGP-WTSKLLPFTRI 217 (380)
T ss_pred HHHHHHhhcCeEEEEe-eeEEee-cccc----cccccchhhhcCceEEe-----eeeEEEEecCC-Cchhhcccccc
Confidence 444 456677999988 677776 3333 77777665322322222 46899999998 88898887654
No 194
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.78 E-value=0.00019 Score=82.48 Aligned_cols=35 Identities=29% Similarity=0.492 Sum_probs=32.9
Q ss_pred CCccEEEECCCCchHHHhhhhcC-CCeEEEEeccCC
Q 009272 45 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 79 (538)
Q Consensus 45 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (538)
..+||+|||+|++|+++|..|++ |++|+|+|+++.
T Consensus 162 ~~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~ 197 (985)
T TIGR01372 162 AHCDVLVVGAGPAGLAAALAAARAGARVILVDEQPE 197 (985)
T ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Confidence 46899999999999999999999 999999999975
No 195
>PLN02676 polyamine oxidase
Probab=97.77 E-value=2.8e-05 Score=82.22 Aligned_cols=60 Identities=32% Similarity=0.403 Sum_probs=44.9
Q ss_pred hhHHHHHHHHHHHHhhcccccccCCCcccccccccCCCCCCccEEEECCCCchHHHhhhhcC-CC-eEEEEeccCCCCC
Q 009272 6 LRLSFVATLATFLFFHDFCACQKAPNYSFMRNATAAKPVSYYDYIVIGGGTAGCPLAASLSQ-NA-SVLLLERGDSPYG 82 (538)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIIVGsG~aG~~~A~~La~-g~-~VlvlE~G~~~~~ 82 (538)
+.|.+++++++-+++... +.....+||||||+|++|+++|++|++ |. +|+|+|+.+....
T Consensus 3 ~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG 64 (487)
T PLN02676 3 LLLSLSVLLAVHLFAVAA-----------------MDAKPSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGG 64 (487)
T ss_pred HHHHHHHHHHHHHHHHhh-----------------hcccCCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCC
Confidence 456666677666555311 112346899999999999999999999 97 6999999987543
No 196
>PRK05868 hypothetical protein; Validated
Probab=97.77 E-value=0.00039 Score=71.17 Aligned_cols=32 Identities=31% Similarity=0.368 Sum_probs=30.6
Q ss_pred cEEEECCCCchHHHhhhhcC-CCeEEEEeccCC
Q 009272 48 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 79 (538)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (538)
||+|||+|++|+++|..|++ |.+|+|+|+.+.
T Consensus 3 ~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~ 35 (372)
T PRK05868 3 TVVVSGASVAGTAAAYWLGRHGYSVTMVERHPG 35 (372)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Confidence 79999999999999999999 999999999875
No 197
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=97.76 E-value=2e-05 Score=81.35 Aligned_cols=36 Identities=39% Similarity=0.481 Sum_probs=33.4
Q ss_pred CCCccEEEECCCCchHHHhhhhcC-CCeEEEEeccCC
Q 009272 44 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 79 (538)
Q Consensus 44 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (538)
.+.|||||||+|++|+++|..|++ |.+|+|||+.+.
T Consensus 5 ~~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~ 41 (388)
T PRK07494 5 KEHTDIAVIGGGPAGLAAAIALARAGASVALVAPEPP 41 (388)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCC
Confidence 457999999999999999999999 999999999864
No 198
>PRK14727 putative mercuric reductase; Provisional
Probab=97.76 E-value=1.7e-05 Score=84.09 Aligned_cols=35 Identities=26% Similarity=0.368 Sum_probs=32.7
Q ss_pred CCccEEEECCCCchHHHhhhhcC-CCeEEEEeccCC
Q 009272 45 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 79 (538)
Q Consensus 45 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (538)
..||+||||+|++|..+|.+|++ |.+|+|+|++..
T Consensus 15 ~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~ 50 (479)
T PRK14727 15 LQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADV 50 (479)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCc
Confidence 46999999999999999999999 999999999854
No 199
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=97.76 E-value=1.8e-05 Score=81.72 Aligned_cols=36 Identities=36% Similarity=0.516 Sum_probs=33.1
Q ss_pred CCCccEEEECCCCchHHHhhhhcC-CCeEEEEeccCC
Q 009272 44 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 79 (538)
Q Consensus 44 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (538)
.+.|||||||+|++|+++|..|++ |.+|+|||+.+.
T Consensus 3 ~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~ 39 (391)
T PRK08020 3 NQPTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAP 39 (391)
T ss_pred cccccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCC
Confidence 456999999999999999999999 999999999863
No 200
>PRK09897 hypothetical protein; Provisional
Probab=97.76 E-value=0.00021 Score=75.87 Aligned_cols=33 Identities=27% Similarity=0.393 Sum_probs=29.5
Q ss_pred ccEEEECCCCchHHHhhhhcC-C--CeEEEEeccCC
Q 009272 47 YDYIVIGGGTAGCPLAASLSQ-N--ASVLLLERGDS 79 (538)
Q Consensus 47 ~DvIIVGsG~aG~~~A~~La~-g--~~VlvlE~G~~ 79 (538)
.+|+|||+|++|+++|.+|.+ + .+|+|+|++..
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~ 37 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADE 37 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCC
Confidence 479999999999999999987 3 69999999865
No 201
>PRK07846 mycothione reductase; Reviewed
Probab=97.76 E-value=2e-05 Score=82.77 Aligned_cols=32 Identities=28% Similarity=0.622 Sum_probs=28.2
Q ss_pred CccEEEECCCCchHHHhhhhcCCCeEEEEeccC
Q 009272 46 YYDYIVIGGGTAGCPLAASLSQNASVLLLERGD 78 (538)
Q Consensus 46 ~~DvIIVGsG~aG~~~A~~La~g~~VlvlE~G~ 78 (538)
+||+||||+|++|..+|.++ .|+||+|||++.
T Consensus 1 ~yD~vVIG~G~~g~~aa~~~-~G~~V~lie~~~ 32 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDERF-ADKRIAIVEKGT 32 (451)
T ss_pred CCCEEEECCCHHHHHHHHHH-CCCeEEEEeCCC
Confidence 49999999999999988774 399999999875
No 202
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.73 E-value=1.8e-05 Score=83.73 Aligned_cols=33 Identities=42% Similarity=0.641 Sum_probs=31.1
Q ss_pred CccEEEECCCCchHHHhhhhcC-CCeEEEEeccC
Q 009272 46 YYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD 78 (538)
Q Consensus 46 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (538)
+||+||||+|++|..+|.+|++ |++|+|||+..
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~~ 35 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFVT 35 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence 5999999999999999999999 99999999853
No 203
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=97.73 E-value=2.1e-05 Score=81.25 Aligned_cols=32 Identities=38% Similarity=0.609 Sum_probs=30.5
Q ss_pred ccEEEECCCCchHHHhhhhcC-CCeEEEEeccC
Q 009272 47 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD 78 (538)
Q Consensus 47 ~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (538)
+||||||+|++|+++|+.|++ |.+|+|||+..
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~ 33 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKP 33 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCC
Confidence 699999999999999999999 99999999975
No 204
>PRK09126 hypothetical protein; Provisional
Probab=97.73 E-value=2e-05 Score=81.46 Aligned_cols=34 Identities=38% Similarity=0.530 Sum_probs=32.7
Q ss_pred CccEEEECCCCchHHHhhhhcC-CCeEEEEeccCC
Q 009272 46 YYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 79 (538)
Q Consensus 46 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (538)
+|||||||+|++|+++|..|++ |.+|+|+||.+.
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~ 37 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPL 37 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCc
Confidence 6999999999999999999999 999999999985
No 205
>PRK08013 oxidoreductase; Provisional
Probab=97.72 E-value=2.2e-05 Score=81.27 Aligned_cols=34 Identities=29% Similarity=0.468 Sum_probs=32.5
Q ss_pred CccEEEECCCCchHHHhhhhcC-CCeEEEEeccCC
Q 009272 46 YYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 79 (538)
Q Consensus 46 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (538)
+|||+|||+|++|+++|..|++ |.+|+|||+.+.
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~ 37 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVP 37 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCC
Confidence 5999999999999999999999 999999999975
No 206
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.69 E-value=2.6e-05 Score=81.91 Aligned_cols=39 Identities=38% Similarity=0.417 Sum_probs=35.4
Q ss_pred CCCccEEEECCCCchHHHhhhhcC-CCeEEEEeccCCCCC
Q 009272 44 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSPYG 82 (538)
Q Consensus 44 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~~~ 82 (538)
.+..+|||||+|.+|++||..|.+ |.+|+|||+-++.+.
T Consensus 13 ~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGG 52 (501)
T KOG0029|consen 13 GKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGG 52 (501)
T ss_pred cCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCc
Confidence 457899999999999999999999 999999999987653
No 207
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=97.68 E-value=2.6e-05 Score=78.96 Aligned_cols=36 Identities=42% Similarity=0.728 Sum_probs=32.7
Q ss_pred ccEEEECCCCchHHHhhhhcC-CCeEEEEeccCCCCC
Q 009272 47 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSPYG 82 (538)
Q Consensus 47 ~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~~~ 82 (538)
+||+|||+|++|+++|.+|++ |.+|+|||+.+....
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG 38 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGG 38 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCC
Confidence 799999999999999999999 999999999775443
No 208
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=2.6e-05 Score=76.76 Aligned_cols=35 Identities=43% Similarity=0.715 Sum_probs=30.8
Q ss_pred CCccEEEECCCCchHHHhhhhcC-CCe-EEEEeccCC
Q 009272 45 SYYDYIVIGGGTAGCPLAASLSQ-NAS-VLLLERGDS 79 (538)
Q Consensus 45 ~~~DvIIVGsG~aG~~~A~~La~-g~~-VlvlE~G~~ 79 (538)
+.|||||||||++|+++|.++++ +++ ++|+|++..
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~ 38 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEP 38 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCc
Confidence 46999999999999999999999 988 777777653
No 209
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=97.66 E-value=0.0016 Score=68.50 Aligned_cols=37 Identities=32% Similarity=0.424 Sum_probs=33.3
Q ss_pred CCCccEEEECCCCchHHHhhhhcC-CCeEEEEeccCCC
Q 009272 44 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSP 80 (538)
Q Consensus 44 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~ 80 (538)
...+||+|||+|++|+.+|..|++ |++|+|+|+.+..
T Consensus 131 ~~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~ 168 (449)
T TIGR01316 131 STHKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKP 168 (449)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 346899999999999999999999 9999999997643
No 210
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=97.64 E-value=6.6e-05 Score=78.63 Aligned_cols=33 Identities=48% Similarity=0.754 Sum_probs=27.1
Q ss_pred cEEEECCCCchHHHhhhhcC-C---CeEEEEeccCCC
Q 009272 48 DYIVIGGGTAGCPLAASLSQ-N---ASVLLLERGDSP 80 (538)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g---~~VlvlE~G~~~ 80 (538)
||||||+|++|..+|..|++ + .+|+|||+....
T Consensus 1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~~~~ 37 (454)
T PF04820_consen 1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESPDIP 37 (454)
T ss_dssp EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-SSS-
T ss_pred CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecCCCC
Confidence 79999999999999999999 6 799999999764
No 211
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=97.63 E-value=3.2e-05 Score=79.61 Aligned_cols=33 Identities=36% Similarity=0.684 Sum_probs=31.4
Q ss_pred CccEEEECCCCchHHHhhhhcC-CCeEEEEeccC
Q 009272 46 YYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD 78 (538)
Q Consensus 46 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (538)
.|||+|||+|++|+++|..|++ |.+|+|+|+.+
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~ 36 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGE 36 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCC
Confidence 5899999999999999999999 99999999875
No 212
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=97.62 E-value=0.00022 Score=71.68 Aligned_cols=63 Identities=21% Similarity=0.290 Sum_probs=38.1
Q ss_pred HHHHh-hcCCCCeEEEeccEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCceEEEcCCCcCCHHH
Q 009272 215 ADLLE-YANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQL 286 (538)
Q Consensus 215 ~~~l~-~~~~~~~~i~~~~~V~~I~~~~~~~~~~~~~gV~~~~~~g~~~~~~~~~~~a~~VVLaaGai~tp~l 286 (538)
..|+. .+++..-.+..+++|++|..+.++. .....|++.+.+|....+ .++.||||+| .+|.+
T Consensus 98 ~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~--~~~~~V~~~~~~g~~~~~-----~ar~vVla~G--~~P~i 161 (341)
T PF13434_consen 98 NDYLRWVAEQLDNQVRYGSEVTSIEPDDDGD--EDLFRVTTRDSDGDGETY-----RARNVVLATG--GQPRI 161 (341)
T ss_dssp HHHHHHHHCCGTTTEEESEEEEEEEEEEETT--EEEEEEEEEETTS-EEEE-----EESEEEE------EE--
T ss_pred HHHHHHHHHhCCCceEECCEEEEEEEecCCC--ccEEEEEEeecCCCeeEE-----EeCeEEECcC--CCCCC
Confidence 34665 5566565588899999999876521 145667776666765555 3799999999 55553
No 213
>PLN02463 lycopene beta cyclase
Probab=97.61 E-value=3.8e-05 Score=80.01 Aligned_cols=36 Identities=31% Similarity=0.487 Sum_probs=32.8
Q ss_pred CCCccEEEECCCCchHHHhhhhcC-CCeEEEEeccCC
Q 009272 44 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 79 (538)
Q Consensus 44 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (538)
...|||||||+|++|+++|..|++ |.+|+|||+.+.
T Consensus 26 ~~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~ 62 (447)
T PLN02463 26 SRVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPL 62 (447)
T ss_pred ccCceEEEECCCHHHHHHHHHHHHCCCeEEEeccCcc
Confidence 346999999999999999999999 999999999753
No 214
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=97.60 E-value=4e-05 Score=79.56 Aligned_cols=33 Identities=33% Similarity=0.570 Sum_probs=31.4
Q ss_pred CCccEEEECCCCchHHHhhhhcC-CCeEEEEecc
Q 009272 45 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERG 77 (538)
Q Consensus 45 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G 77 (538)
..|||+|||+|++|+++|..|++ |.+|+|+|+.
T Consensus 3 ~~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~ 36 (405)
T PRK08850 3 QSVDVAIIGGGMVGLALAAALKESDLRIAVIEGQ 36 (405)
T ss_pred CcCCEEEECccHHHHHHHHHHHhCCCEEEEEcCC
Confidence 46999999999999999999999 9999999996
No 215
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=97.58 E-value=0.00084 Score=65.04 Aligned_cols=40 Identities=33% Similarity=0.350 Sum_probs=35.1
Q ss_pred CccEEEECCCCchHHHhhhhcCCCeEEEEeccCCCCCCCC
Q 009272 46 YYDYIVIGGGTAGCPLAASLSQNASVLLLERGDSPYGNPN 85 (538)
Q Consensus 46 ~~DvIIVGsG~aG~~~A~~La~g~~VlvlE~G~~~~~~~~ 85 (538)
.-++.|||||.+|+++|+.|++-.+|.|.|++.+.....+
T Consensus 8 r~~IAVIGsGisGLSAA~~Ls~rhdVTLfEA~~rlGGha~ 47 (447)
T COG2907 8 RRKIAVIGSGISGLSAAWLLSRRHDVTLFEADRRLGGHAN 47 (447)
T ss_pred CcceEEEcccchhhhhHHhhhcccceEEEeccccccCccc
Confidence 4579999999999999999999889999999998765443
No 216
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.57 E-value=4.2e-05 Score=80.64 Aligned_cols=32 Identities=38% Similarity=0.606 Sum_probs=30.2
Q ss_pred cEEEECCCCchHHHhhhhcC-CCeEEEEeccCC
Q 009272 48 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 79 (538)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (538)
++||||+|++|..+|.+|++ |++|+|||++..
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~~ 34 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEADL 34 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCcc
Confidence 69999999999999999999 999999999864
No 217
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=97.57 E-value=0.00059 Score=69.03 Aligned_cols=111 Identities=13% Similarity=0.117 Sum_probs=66.2
Q ss_pred HHHHHHHHHHcCCCCCCCCccCCCCceeeeeeeeCCCCccccHHH-HHhhcCCCCeEEEeccEEEEEEecCCCCCCCeEE
Q 009272 172 QSALRDGLVEVGVLPYNGFTYDHLYGTKIGGTIIDQNSQRHTAAD-LLEYANPSGLTVLLHASVHKILFRNKGKARPVAH 250 (538)
Q Consensus 172 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~r~~~~~-~l~~~~~~~~~i~~~~~V~~I~~~~~~~~~~~~~ 250 (538)
.+.+.+.|.+.|+... ....+.++|......+... ++..+++.|++|+++++|+.| +++ . .
T Consensus 56 ~~d~~~fF~~~Gi~~~----------~e~~grvfP~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~~~-----~-~ 117 (376)
T TIGR03862 56 AVALQDWARGLGIETF----------VGSSGRVFPVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGW--QGG-----T-L 117 (376)
T ss_pred HHHHHHHHHHCCCceE----------ECCCCEECCCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEE--eCC-----c-E
Confidence 3557788888898521 0112245554443334433 556788899999999999999 322 2 3
Q ss_pred EEEEEeCCCCeEEEEeccCCCceEEEcCCCcCCHHHHHHcCCCChhhhhhCCCceeecCc
Q 009272 251 GVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVGPADHLKAHNITVVLDQP 310 (538)
Q Consensus 251 gV~~~~~~g~~~~~~~~~~~a~~VVLaaGai~tp~lLl~SGig~~~~l~~~gi~~~~~~p 310 (538)
.|.+. .+. ..+ .++.||||+|+...|.+- -+|-| .....++|+++....|
T Consensus 118 ~v~~~--~~~-~~~-----~a~~vIlAtGG~s~p~~G-s~g~g-y~la~~lGh~i~~~~P 167 (376)
T TIGR03862 118 RFETP--DGQ-STI-----EADAVVLALGGASWSQLG-SDGAW-QQVLDQRGVSVAPFAP 167 (376)
T ss_pred EEEEC--CCc-eEE-----ecCEEEEcCCCccccccC-CCcHH-HHHHHHCCCcccCCcC
Confidence 45443 222 122 489999999998877641 11211 2335567776655555
No 218
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=97.53 E-value=0.0002 Score=72.21 Aligned_cols=67 Identities=18% Similarity=0.294 Sum_probs=46.4
Q ss_pred eeCCCCccccHHH---HHhhcCCCCeEEEeccEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCceEEEcCCC
Q 009272 204 IIDQNSQRHTAAD---LLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGA 280 (538)
Q Consensus 204 ~~~~~g~r~~~~~---~l~~~~~~~~~i~~~~~V~~I~~~~~~~~~~~~~gV~~~~~~g~~~~~~~~~~~a~~VVLaaGa 280 (538)
+.+.+|.-.+... ++..+.+.|++++.+++|+.|..+++ ++++|... +|. + .++.||+|+|+
T Consensus 127 ~~~~~g~v~p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~~~-----~~~~v~~~--~g~---~-----~a~~vV~a~G~ 191 (337)
T TIGR02352 127 FYPDDAHVDPRALLKALEKALEKLGVEIIEHTEVQHIEIRGE-----KVTAIVTP--SGD---V-----QADQVVLAAGA 191 (337)
T ss_pred EcCCCceEChHHHHHHHHHHHHHcCCEEEccceEEEEEeeCC-----EEEEEEcC--CCE---E-----ECCEEEEcCCh
Confidence 3344565444432 45566778999999999999998765 77777643 342 2 47999999998
Q ss_pred cCCHHH
Q 009272 281 LGSPQL 286 (538)
Q Consensus 281 i~tp~l 286 (538)
+++.|
T Consensus 192 -~~~~l 196 (337)
T TIGR02352 192 -WAGEL 196 (337)
T ss_pred -hhhhc
Confidence 55554
No 219
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=97.52 E-value=0.0021 Score=73.79 Aligned_cols=36 Identities=25% Similarity=0.260 Sum_probs=33.1
Q ss_pred CCccEEEECCCCchHHHhhhhcC-CCeEEEEeccCCC
Q 009272 45 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSP 80 (538)
Q Consensus 45 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~ 80 (538)
+..+|+|||||++|+++|..|++ |++|+|+|+.+..
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~ 465 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVV 465 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCC
Confidence 45799999999999999999999 9999999998754
No 220
>PLN02268 probable polyamine oxidase
Probab=97.52 E-value=6e-05 Score=79.03 Aligned_cols=35 Identities=46% Similarity=0.575 Sum_probs=32.8
Q ss_pred cEEEECCCCchHHHhhhhcC-CCeEEEEeccCCCCC
Q 009272 48 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSPYG 82 (538)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~~~ 82 (538)
+|||||+|.+|+++|++|.+ |.+|+|||+.++...
T Consensus 2 ~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GG 37 (435)
T PLN02268 2 SVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGG 37 (435)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCc
Confidence 79999999999999999999 999999999998764
No 221
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=97.51 E-value=0.0018 Score=66.43 Aligned_cols=59 Identities=20% Similarity=0.372 Sum_probs=46.1
Q ss_pred hcCCCCeEEEeccEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCceEEEcCCCcC
Q 009272 220 YANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALG 282 (538)
Q Consensus 220 ~~~~~~~~i~~~~~V~~I~~~~~~~~~~~~~gV~~~~~~g~~~~~~~~~~~a~~VVLaaGai~ 282 (538)
.++..||.+..+++|+.|.++.++ ....++++.+. .+|+..++.+. +.+.|++.-|.+-
T Consensus 216 ~L~~~GV~F~~~t~V~di~~~~~~-~~~~~~~i~~~-~~g~~~~i~l~--~~DlV~vT~GS~t 274 (500)
T PF06100_consen 216 YLKSQGVDFRFNTKVTDIDFDITG-DKKTATRIHIE-QDGKEETIDLG--PDDLVFVTNGSMT 274 (500)
T ss_pred HHHHCCCEEECCCEEEEEEEEccC-CCeeEEEEEEE-cCCCeeEEEeC--CCCEEEEECCccc
Confidence 456789999999999999997653 23477888887 46777777665 7899999999753
No 222
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=97.50 E-value=7.7e-05 Score=75.11 Aligned_cols=38 Identities=32% Similarity=0.359 Sum_probs=34.7
Q ss_pred CCCccEEEECCCCchHHHhhhhcC-CCeEEEEeccCCCC
Q 009272 44 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSPY 81 (538)
Q Consensus 44 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~~ 81 (538)
.+..||||||+|.+||++|++|.+ |++|+|||.-++..
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~G 43 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVG 43 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcC
Confidence 457899999999999999999999 99999999988753
No 223
>PTZ00367 squalene epoxidase; Provisional
Probab=97.48 E-value=6.9e-05 Score=80.30 Aligned_cols=34 Identities=47% Similarity=0.660 Sum_probs=32.2
Q ss_pred CCccEEEECCCCchHHHhhhhcC-CCeEEEEeccC
Q 009272 45 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD 78 (538)
Q Consensus 45 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (538)
..|||||||+|++|+++|..|++ |.+|+|+||.+
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 47999999999999999999999 99999999976
No 224
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=97.47 E-value=0.00016 Score=74.47 Aligned_cols=33 Identities=36% Similarity=0.643 Sum_probs=31.4
Q ss_pred CccEEEECCCCchHHHhhhhcC-CCeEEEEeccC
Q 009272 46 YYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD 78 (538)
Q Consensus 46 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (538)
+|||||||+|.+|+++|..|++ |.+|+|||++.
T Consensus 2 ~~DviIIG~G~aGl~aA~~la~~g~~v~vi~~~~ 35 (422)
T PRK05329 2 KFDVLVIGGGLAGLTAALAAAEAGKRVALVAKGQ 35 (422)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCcEEEEECCC
Confidence 5999999999999999999999 99999999984
No 225
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=97.47 E-value=6.9e-05 Score=77.25 Aligned_cols=34 Identities=26% Similarity=0.407 Sum_probs=32.2
Q ss_pred CccEEEECCCCchHHHhhhhcC-CCeEEEEeccCC
Q 009272 46 YYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 79 (538)
Q Consensus 46 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (538)
.+||+|||+|++|+++|..|++ |.+|+|+|+.+.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~ 36 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSR 36 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 4899999999999999999999 999999999974
No 226
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.46 E-value=7.3e-05 Score=76.68 Aligned_cols=33 Identities=21% Similarity=0.352 Sum_probs=31.2
Q ss_pred ccEEEECCCCchHHHhhhhcC-CCeEEEEeccCC
Q 009272 47 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 79 (538)
Q Consensus 47 ~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (538)
+||+|||+|++|+++|..|++ |.+|+|+|+.+.
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~~ 35 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQKGIKTTIFESKSV 35 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcCCCeEEEecCCCC
Confidence 799999999999999999999 999999999853
No 227
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=97.44 E-value=7.6e-05 Score=78.59 Aligned_cols=35 Identities=37% Similarity=0.538 Sum_probs=31.7
Q ss_pred cEEEECCCCchHHHhhhhcC-C--CeEEEEeccCCCCC
Q 009272 48 DYIVIGGGTAGCPLAASLSQ-N--ASVLLLERGDSPYG 82 (538)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g--~~VlvlE~G~~~~~ 82 (538)
+|+|||||++|+++|++|++ | .+|+|+|+.+....
T Consensus 2 ~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GG 39 (451)
T PRK11883 2 KVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGG 39 (451)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcc
Confidence 59999999999999999999 7 89999999887543
No 228
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=97.44 E-value=0.0011 Score=69.00 Aligned_cols=32 Identities=38% Similarity=0.598 Sum_probs=29.5
Q ss_pred cEEEECCCCchHHHhhhhcC-C-CeEEEEeccCC
Q 009272 48 DYIVIGGGTAGCPLAASLSQ-N-ASVLLLERGDS 79 (538)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g-~~VlvlE~G~~ 79 (538)
.|+|||+|++|+++|..|++ | .+|+|+||.+.
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~ 35 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPA 35 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCc
Confidence 58999999999999999999 7 59999999864
No 229
>PRK07233 hypothetical protein; Provisional
Probab=97.39 E-value=9.8e-05 Score=77.28 Aligned_cols=35 Identities=31% Similarity=0.492 Sum_probs=32.5
Q ss_pred cEEEECCCCchHHHhhhhcC-CCeEEEEeccCCCCC
Q 009272 48 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSPYG 82 (538)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~~~ 82 (538)
+|||||+|.+|+++|+.|++ |++|+|+|+.+....
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG 36 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGG 36 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCC
Confidence 58999999999999999999 999999999998654
No 230
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.37 E-value=0.00012 Score=75.53 Aligned_cols=34 Identities=44% Similarity=0.617 Sum_probs=31.0
Q ss_pred CCccEEEECCCCchHHHhhhhcC----CCeEEEEeccC
Q 009272 45 SYYDYIVIGGGTAGCPLAASLSQ----NASVLLLERGD 78 (538)
Q Consensus 45 ~~~DvIIVGsG~aG~~~A~~La~----g~~VlvlE~G~ 78 (538)
+.+||+|||+|++|+++|+.|++ |.+|+|+|+..
T Consensus 2 ~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~ 39 (395)
T PRK05732 2 SRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFA 39 (395)
T ss_pred CcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCC
Confidence 46999999999999999999976 89999999963
No 231
>PLN02576 protoporphyrinogen oxidase
Probab=97.36 E-value=0.00014 Score=77.64 Aligned_cols=38 Identities=34% Similarity=0.437 Sum_probs=34.1
Q ss_pred CCccEEEECCCCchHHHhhhhcC--CCeEEEEeccCCCCC
Q 009272 45 SYYDYIVIGGGTAGCPLAASLSQ--NASVLLLERGDSPYG 82 (538)
Q Consensus 45 ~~~DvIIVGsG~aG~~~A~~La~--g~~VlvlE~G~~~~~ 82 (538)
..+||||||||++|+++|++|++ |.+|+|+|+.+....
T Consensus 11 ~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGG 50 (496)
T PLN02576 11 SSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGG 50 (496)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCC
Confidence 45799999999999999999998 699999999987654
No 232
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=97.36 E-value=0.00012 Score=76.60 Aligned_cols=32 Identities=44% Similarity=0.816 Sum_probs=29.9
Q ss_pred ccEEEECCCCchHHHhhhhcC-----CCeEEEEeccC
Q 009272 47 YDYIVIGGGTAGCPLAASLSQ-----NASVLLLERGD 78 (538)
Q Consensus 47 ~DvIIVGsG~aG~~~A~~La~-----g~~VlvlE~G~ 78 (538)
|||||||+|++|+++|+.|++ |.+|+|||+.+
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~ 37 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVD 37 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCC
Confidence 799999999999999999996 78999999965
No 233
>PRK06996 hypothetical protein; Provisional
Probab=97.33 E-value=0.00016 Score=74.83 Aligned_cols=36 Identities=25% Similarity=0.524 Sum_probs=32.2
Q ss_pred CCCccEEEECCCCchHHHhhhhcC-C----CeEEEEeccCC
Q 009272 44 VSYYDYIVIGGGTAGCPLAASLSQ-N----ASVLLLERGDS 79 (538)
Q Consensus 44 ~~~~DvIIVGsG~aG~~~A~~La~-g----~~VlvlE~G~~ 79 (538)
.+.|||+|||+|++|+++|..|++ | ++|+|+|+.+.
T Consensus 9 ~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~ 49 (398)
T PRK06996 9 APDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREP 49 (398)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCC
Confidence 457999999999999999999999 7 47999999864
No 234
>PLN02568 polyamine oxidase
Probab=97.32 E-value=0.00016 Score=77.24 Aligned_cols=39 Identities=28% Similarity=0.382 Sum_probs=34.6
Q ss_pred CCCccEEEECCCCchHHHhhhhcC-C-----CeEEEEeccCCCCC
Q 009272 44 VSYYDYIVIGGGTAGCPLAASLSQ-N-----ASVLLLERGDSPYG 82 (538)
Q Consensus 44 ~~~~DvIIVGsG~aG~~~A~~La~-g-----~~VlvlE~G~~~~~ 82 (538)
.+..||||||+|.+|+++|.+|++ | .+|+|+|+......
T Consensus 3 ~~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GG 47 (539)
T PLN02568 3 AKKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGG 47 (539)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCC
Confidence 446899999999999999999997 7 89999999987654
No 235
>PRK10262 thioredoxin reductase; Provisional
Probab=97.32 E-value=0.00016 Score=72.59 Aligned_cols=36 Identities=19% Similarity=0.336 Sum_probs=32.3
Q ss_pred CCCCccEEEECCCCchHHHhhhhcC-CCeEEEEeccC
Q 009272 43 PVSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD 78 (538)
Q Consensus 43 ~~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (538)
..+.+||+|||+|++|+.+|..|++ |++|+++|+..
T Consensus 3 ~~~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~~ 39 (321)
T PRK10262 3 TTKHSKLLILGSGPAGYTAAVYAARANLQPVLITGME 39 (321)
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEeec
Confidence 3568999999999999999999999 99999998653
No 236
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.27 E-value=0.00058 Score=68.66 Aligned_cols=34 Identities=50% Similarity=0.816 Sum_probs=30.3
Q ss_pred CCCccEEEECCCCchHHHhhhhcC-CCeEEEEecc
Q 009272 44 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERG 77 (538)
Q Consensus 44 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G 77 (538)
...|||||||+|-|||-+|...|+ |.+.++|-..
T Consensus 26 ~~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ 60 (679)
T KOG2311|consen 26 TSTYDVVVIGGGHAGCEAAAAAARLGARTLLLTHN 60 (679)
T ss_pred CCcccEEEECCCccchHHHHHHHhcCCceEEeecc
Confidence 568999999999999999999999 9988888544
No 237
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=97.23 E-value=0.006 Score=54.02 Aligned_cols=30 Identities=20% Similarity=0.440 Sum_probs=25.4
Q ss_pred EEECCCCchHHHhhhhcC-C-----CeEEEEeccCC
Q 009272 50 IVIGGGTAGCPLAASLSQ-N-----ASVLLLERGDS 79 (538)
Q Consensus 50 IIVGsG~aG~~~A~~La~-g-----~~VlvlE~G~~ 79 (538)
.|||+|++|++++.+|.+ . .+|.|+|+.+.
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~ 36 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF 36 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc
Confidence 499999999999999876 2 58999999653
No 238
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=97.22 E-value=0.0018 Score=66.53 Aligned_cols=67 Identities=16% Similarity=0.138 Sum_probs=42.8
Q ss_pred eeCCCCccccHHH---HHhhcCCCCeEEEeccEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCceEEEcCCC
Q 009272 204 IIDQNSQRHTAAD---LLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGA 280 (538)
Q Consensus 204 ~~~~~g~r~~~~~---~l~~~~~~~~~i~~~~~V~~I~~~~~~~~~~~~~gV~~~~~~g~~~~~~~~~~~a~~VVLaaGa 280 (538)
+.+.+|.-++... |...+.+ |++++++++|+.|..+++ + ..|.+ .+|.. + .++.||+|+|+
T Consensus 125 ~~~~~g~idp~~~~~~l~~~~~~-G~~i~~~~~V~~i~~~~~-----~-~~v~t--~~g~~--~-----~a~~vV~a~G~ 188 (381)
T TIGR03197 125 FFPQGGWLSPPQLCRALLAHAGI-RLTLHFNTEITSLERDGE-----G-WQLLD--ANGEV--I-----AASVVVLANGA 188 (381)
T ss_pred EeCCCcccChHHHHHHHHhccCC-CcEEEeCCEEEEEEEcCC-----e-EEEEe--CCCCE--E-----EcCEEEEcCCc
Confidence 4444554443322 4456677 999999999999987654 3 33433 35542 2 47999999998
Q ss_pred cCCHHHH
Q 009272 281 LGSPQLL 287 (538)
Q Consensus 281 i~tp~lL 287 (538)
+++.++
T Consensus 189 -~~~~l~ 194 (381)
T TIGR03197 189 -QAGQLA 194 (381)
T ss_pred -cccccc
Confidence 454443
No 239
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=97.21 E-value=0.00022 Score=75.31 Aligned_cols=36 Identities=31% Similarity=0.435 Sum_probs=32.5
Q ss_pred ccEEEECCCCchHHHhhhhcC-----CCeEEEEeccCCCCC
Q 009272 47 YDYIVIGGGTAGCPLAASLSQ-----NASVLLLERGDSPYG 82 (538)
Q Consensus 47 ~DvIIVGsG~aG~~~A~~La~-----g~~VlvlE~G~~~~~ 82 (538)
.||||||+|++|+++|++|++ |.+|+|+|+.+....
T Consensus 3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG 43 (462)
T TIGR00562 3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGG 43 (462)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcc
Confidence 689999999999999999987 589999999987654
No 240
>PRK07538 hypothetical protein; Provisional
Probab=97.19 E-value=0.00021 Score=74.33 Aligned_cols=32 Identities=31% Similarity=0.567 Sum_probs=30.5
Q ss_pred cEEEECCCCchHHHhhhhcC-CCeEEEEeccCC
Q 009272 48 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 79 (538)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (538)
||+|||+|++|+++|..|++ |.+|+|+|+.+.
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 34 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPE 34 (413)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCc
Confidence 89999999999999999999 999999999864
No 241
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=97.18 E-value=0.00021 Score=66.09 Aligned_cols=32 Identities=41% Similarity=0.737 Sum_probs=29.8
Q ss_pred cEEEECCCCchHHHhhhhcC-CCeEEEEeccCC
Q 009272 48 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 79 (538)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (538)
||||||||++|+.+|.+|++ +.+|+|+|+.+.
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~ 33 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPG 33 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSH
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEecccc
Confidence 79999999999999999999 999999988764
No 242
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=97.18 E-value=0.00023 Score=72.61 Aligned_cols=32 Identities=34% Similarity=0.658 Sum_probs=30.0
Q ss_pred cEEEECCCCchHHHhhhhcC---CCeEEEEeccCC
Q 009272 48 DYIVIGGGTAGCPLAASLSQ---NASVLLLERGDS 79 (538)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~---g~~VlvlE~G~~ 79 (538)
||||||+|++|+++|.+|++ |++|+|||+++.
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~ 35 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRT 35 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCC
Confidence 89999999999999999986 899999999874
No 243
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=97.18 E-value=0.00024 Score=72.90 Aligned_cols=37 Identities=30% Similarity=0.327 Sum_probs=33.5
Q ss_pred cEEEECCCCchHHHhhhhcC-CCeEEEEeccCCCCCCC
Q 009272 48 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSPYGNP 84 (538)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~~~~~ 84 (538)
-|+|+|+|.||+++|++|++ |++|.|+|++++...+.
T Consensus 2 rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk~ 39 (485)
T COG3349 2 RVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKV 39 (485)
T ss_pred eEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCcee
Confidence 38999999999999999999 99999999999876543
No 244
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=97.15 E-value=0.00032 Score=76.73 Aligned_cols=37 Identities=32% Similarity=0.463 Sum_probs=33.8
Q ss_pred CCCCccEEEECCCCchHHHhhhhcC--CCeEEEEeccCC
Q 009272 43 PVSYYDYIVIGGGTAGCPLAASLSQ--NASVLLLERGDS 79 (538)
Q Consensus 43 ~~~~~DvIIVGsG~aG~~~A~~La~--g~~VlvlE~G~~ 79 (538)
|.+++||+|||+|++|+++|..|++ |.+|+|||+.+.
T Consensus 29 ~~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~ 67 (634)
T PRK08294 29 LPDEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPG 67 (634)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCC
Confidence 4568999999999999999999998 799999999864
No 245
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=97.11 E-value=0.0033 Score=65.85 Aligned_cols=32 Identities=19% Similarity=0.506 Sum_probs=29.2
Q ss_pred cEEEECCCCchHHHhhhhcC---CCeEEEEeccCC
Q 009272 48 DYIVIGGGTAGCPLAASLSQ---NASVLLLERGDS 79 (538)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~---g~~VlvlE~G~~ 79 (538)
.|||||+|++|+.+|.+|.+ +.+|+|+|+.+.
T Consensus 3 ~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~ 37 (438)
T PRK13512 3 KIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRD 37 (438)
T ss_pred eEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCC
Confidence 59999999999999999987 479999999975
No 246
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=97.11 E-value=0.00029 Score=74.46 Aligned_cols=35 Identities=29% Similarity=0.493 Sum_probs=31.2
Q ss_pred cEEEECCCCchHHHhhhhcC-C------CeEEEEeccCCCCC
Q 009272 48 DYIVIGGGTAGCPLAASLSQ-N------ASVLLLERGDSPYG 82 (538)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g------~~VlvlE~G~~~~~ 82 (538)
+|||||+|++|+++|++|++ + .+|+|+|+.++...
T Consensus 3 ~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GG 44 (463)
T PRK12416 3 TVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGG 44 (463)
T ss_pred eEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccc
Confidence 59999999999999999997 4 68999999987654
No 247
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=97.08 E-value=0.00032 Score=71.52 Aligned_cols=34 Identities=32% Similarity=0.298 Sum_probs=31.5
Q ss_pred ccEEEECCCCchHHHhhhhcC-CCeEEEEeccCCC
Q 009272 47 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSP 80 (538)
Q Consensus 47 ~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~ 80 (538)
-||+|||+|.+|+.+|+.|++ |.+|+|+|+.+..
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~ 37 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVK 37 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc
Confidence 489999999999999999999 9999999988753
No 248
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=97.07 E-value=0.00034 Score=73.70 Aligned_cols=35 Identities=29% Similarity=0.372 Sum_probs=32.0
Q ss_pred cEEEECCCCchHHHhhhhcC-CCeEEEEeccCCCCC
Q 009272 48 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSPYG 82 (538)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~~~ 82 (538)
+|+|||+|++|+++|++|++ |++|+|+|+.+....
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG 36 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGG 36 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Confidence 48999999999999999999 999999999987543
No 249
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=97.06 E-value=0.00039 Score=75.34 Aligned_cols=35 Identities=26% Similarity=0.366 Sum_probs=32.8
Q ss_pred CCCccEEEECCCCchHHHhhhhcC-CCeEEEEeccC
Q 009272 44 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD 78 (538)
Q Consensus 44 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (538)
.+.++|+|||||++|+++|..|++ |.+|.|+||.+
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~ 114 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL 114 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence 457999999999999999999999 99999999975
No 250
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=97.05 E-value=0.00041 Score=78.33 Aligned_cols=36 Identities=31% Similarity=0.445 Sum_probs=33.1
Q ss_pred CCccEEEECCCCchHHHhhhhcC-CCeEEEEeccCCC
Q 009272 45 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSP 80 (538)
Q Consensus 45 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~ 80 (538)
..++|+|||||+||+++|+.|++ |++|+|+|+.+..
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~l 572 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKP 572 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeccccc
Confidence 45899999999999999999999 9999999998754
No 251
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=97.02 E-value=0.00045 Score=66.38 Aligned_cols=34 Identities=35% Similarity=0.628 Sum_probs=32.4
Q ss_pred CccEEEECCCCchHHHhhhhcC-CCeEEEEeccCC
Q 009272 46 YYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 79 (538)
Q Consensus 46 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (538)
+|||+|||+|.+|+.+|++|.+ |+++.+|-+|..
T Consensus 2 ~fDv~IIGGGLAGltc~l~l~~~Gk~c~iv~~gQs 36 (421)
T COG3075 2 NFDVAIIGGGLAGLTCGLALQQAGKRCAIVNRGQS 36 (421)
T ss_pred cccEEEEcCcHHHHHHHHHHHhcCCcEEEEeCChh
Confidence 6999999999999999999999 999999999974
No 252
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=96.99 E-value=0.0005 Score=69.36 Aligned_cols=34 Identities=38% Similarity=0.530 Sum_probs=31.9
Q ss_pred CccEEEECCCCchHHHhhhhcC-CCeEEEEeccCC
Q 009272 46 YYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 79 (538)
Q Consensus 46 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (538)
.=+++|||||++|+.+|+.||+ |.+|.|+|+.+.
T Consensus 124 ~~svLVIGGGvAGitAAl~La~~G~~v~LVEKeps 158 (622)
T COG1148 124 SKSVLVIGGGVAGITAALELADMGFKVYLVEKEPS 158 (622)
T ss_pred ccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCc
Confidence 3479999999999999999999 999999999986
No 253
>PRK12831 putative oxidoreductase; Provisional
Probab=96.95 E-value=0.00064 Score=71.60 Aligned_cols=36 Identities=28% Similarity=0.306 Sum_probs=33.0
Q ss_pred CCCccEEEECCCCchHHHhhhhcC-CCeEEEEeccCC
Q 009272 44 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 79 (538)
Q Consensus 44 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (538)
....||+|||+|++|+.+|++|++ |++|+|+|+.+.
T Consensus 138 ~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~ 174 (464)
T PRK12831 138 KKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHE 174 (464)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCC
Confidence 456899999999999999999999 999999998764
No 254
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=96.91 E-value=0.00058 Score=70.25 Aligned_cols=34 Identities=38% Similarity=0.534 Sum_probs=31.1
Q ss_pred EEEECCCCchHHHhhhhcC-C--CeEEEEeccCCCCC
Q 009272 49 YIVIGGGTAGCPLAASLSQ-N--ASVLLLERGDSPYG 82 (538)
Q Consensus 49 vIIVGsG~aG~~~A~~La~-g--~~VlvlE~G~~~~~ 82 (538)
++|||+|.+|+++|++|.+ + .+|.|+|++++...
T Consensus 3 i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG 39 (444)
T COG1232 3 IAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGG 39 (444)
T ss_pred EEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCc
Confidence 8999999999999999999 7 89999999987543
No 255
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=96.90 E-value=0.00058 Score=69.76 Aligned_cols=62 Identities=15% Similarity=0.113 Sum_probs=45.9
Q ss_pred HHhhcCCCCeEEEeccEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCceEEEcCCCcCCHHHHHHc
Q 009272 217 LLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLS 290 (538)
Q Consensus 217 ~l~~~~~~~~~i~~~~~V~~I~~~~~~~~~~~~~gV~~~~~~g~~~~~~~~~~~a~~VVLaaGai~tp~lLl~S 290 (538)
+...+++.|++++.+++|+++..+++ ++++|.+. ++....+ .++.||||+|++.|..|+...
T Consensus 269 L~~~~~~~Gg~il~g~~V~~i~~~~~-----~v~~V~t~--~g~~~~l-----~AD~vVLAaGaw~S~gL~a~l 330 (419)
T TIGR03378 269 LKHRFEQLGGVMLPGDRVLRAEFEGN-----RVTRIHTR--NHRDIPL-----RADHFVLASGSFFSNGLVAEF 330 (419)
T ss_pred HHHHHHHCCCEEEECcEEEEEEeeCC-----eEEEEEec--CCccceE-----ECCEEEEccCCCcCHHHHhhc
Confidence 34455677999999999999998877 78887664 3322233 478999999998788875543
No 256
>PLN02529 lysine-specific histone demethylase 1
Probab=96.86 E-value=0.0015 Score=71.84 Aligned_cols=39 Identities=31% Similarity=0.405 Sum_probs=34.9
Q ss_pred CCCccEEEECCCCchHHHhhhhcC-CCeEEEEeccCCCCC
Q 009272 44 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSPYG 82 (538)
Q Consensus 44 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~~~ 82 (538)
....||+|||+|++|+.+|..|++ |++|+|+|+.+....
T Consensus 158 ~~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG 197 (738)
T PLN02529 158 GTEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGG 197 (738)
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcC
Confidence 356899999999999999999999 999999999887543
No 257
>PLN02612 phytoene desaturase
Probab=96.85 E-value=0.00092 Score=72.24 Aligned_cols=37 Identities=27% Similarity=0.317 Sum_probs=33.7
Q ss_pred CCccEEEECCCCchHHHhhhhcC-CCeEEEEeccCCCC
Q 009272 45 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSPY 81 (538)
Q Consensus 45 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~~ 81 (538)
...+|+|||+|.+|+++|++|++ |++|+|+|+.....
T Consensus 92 ~~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~g 129 (567)
T PLN02612 92 KPLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLG 129 (567)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCC
Confidence 46899999999999999999999 99999999987654
No 258
>PRK06475 salicylate hydroxylase; Provisional
Probab=96.82 E-value=0.00076 Score=69.86 Aligned_cols=32 Identities=25% Similarity=0.446 Sum_probs=30.2
Q ss_pred cEEEECCCCchHHHhhhhcC-CCeEEEEeccCC
Q 009272 48 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 79 (538)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (538)
+|+|||+|++|+++|..|++ |.+|.|+|+.+.
T Consensus 4 ~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~ 36 (400)
T PRK06475 4 SPLIAGAGVAGLSAALELAARGWAVTIIEKAQE 36 (400)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 69999999999999999999 999999999864
No 259
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=96.81 E-value=0.00094 Score=73.76 Aligned_cols=38 Identities=32% Similarity=0.386 Sum_probs=34.5
Q ss_pred CCCccEEEECCCCchHHHhhhhcC-CCeEEEEeccCCCC
Q 009272 44 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSPY 81 (538)
Q Consensus 44 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~~ 81 (538)
....+|+|||+|++|+++|+.|++ |.+|+|+|+.....
T Consensus 236 ~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~G 274 (808)
T PLN02328 236 VEPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPG 274 (808)
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCC
Confidence 456899999999999999999999 99999999988754
No 260
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=96.76 E-value=0.0009 Score=68.66 Aligned_cols=33 Identities=39% Similarity=0.463 Sum_probs=30.7
Q ss_pred ccEEEECCCCchHHHhhhhcC-CCeEEEEeccCC
Q 009272 47 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 79 (538)
Q Consensus 47 ~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (538)
.||+|||+|.+|+.+|..|++ |.+|+|+|+.+.
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~ 34 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPE 34 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEecccc
Confidence 379999999999999999999 999999998765
No 261
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=96.68 E-value=0.0011 Score=70.07 Aligned_cols=35 Identities=26% Similarity=0.311 Sum_probs=31.8
Q ss_pred cEEEECCCCchHHHhhhhcC-CCeEEEEeccCCCCC
Q 009272 48 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSPYG 82 (538)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~~~ 82 (538)
+|+|||+|.+|+++|++|++ |.+|+|+|+.+....
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG 36 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGG 36 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCc
Confidence 48999999999999999999 999999999887543
No 262
>PLN02487 zeta-carotene desaturase
Probab=96.67 E-value=0.0018 Score=69.52 Aligned_cols=37 Identities=24% Similarity=0.213 Sum_probs=33.5
Q ss_pred CCccEEEECCCCchHHHhhhhcC-CCeEEEEeccCCCC
Q 009272 45 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSPY 81 (538)
Q Consensus 45 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~~ 81 (538)
+..+|+|||+|++|+++|++|++ |++|+|+|+.+...
T Consensus 74 ~~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~g 111 (569)
T PLN02487 74 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIG 111 (569)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCC
Confidence 34699999999999999999999 99999999988754
No 263
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=96.64 E-value=0.0012 Score=75.07 Aligned_cols=36 Identities=22% Similarity=0.140 Sum_probs=32.9
Q ss_pred CCccEEEECCCCchHHHhhhhcC-CCeEEEEeccCCC
Q 009272 45 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSP 80 (538)
Q Consensus 45 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~ 80 (538)
+..+|+|||||+||+++|+.|++ |++|+|+|+.+..
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~ 341 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDL 341 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCC
Confidence 35789999999999999999999 9999999998753
No 264
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=96.63 E-value=0.0014 Score=65.37 Aligned_cols=34 Identities=26% Similarity=0.497 Sum_probs=30.9
Q ss_pred CccEEEECCCCchHHHhhhhcC-CCeEEEEeccCC
Q 009272 46 YYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 79 (538)
Q Consensus 46 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (538)
+-+|||||||.+|+++|.-|++ |.+|+|+|+...
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~ 36 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESRED 36 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeeccc
Confidence 3579999999999999999999 999999999543
No 265
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=96.62 E-value=0.0016 Score=68.88 Aligned_cols=37 Identities=30% Similarity=0.398 Sum_probs=33.5
Q ss_pred CCCccEEEECCCCchHHHhhhhcC-CCeEEEEeccCCC
Q 009272 44 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSP 80 (538)
Q Consensus 44 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~ 80 (538)
...++|+|||+|++|+.+|..|++ |++|+|+|+.+..
T Consensus 141 ~~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~ 178 (471)
T PRK12810 141 RTGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRI 178 (471)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCC
Confidence 345799999999999999999999 9999999998764
No 266
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=96.60 E-value=0.0011 Score=68.16 Aligned_cols=43 Identities=35% Similarity=0.414 Sum_probs=32.4
Q ss_pred CCCCccEEEECCCCchHHHhhhhcC-CCeEEEEeccCCCCCCCC
Q 009272 43 PVSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSPYGNPN 85 (538)
Q Consensus 43 ~~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~~~~~~ 85 (538)
|.++|||||+|.|..-+++|..|+. |+|||.||+.++++....
T Consensus 1 m~~~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYGg~~a 44 (438)
T PF00996_consen 1 MDEEYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYGGEWA 44 (438)
T ss_dssp --SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCGGG-
T ss_pred CCccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcCCchh
Confidence 4678999999999999999999999 999999999999876443
No 267
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=96.59 E-value=0.0018 Score=50.17 Aligned_cols=33 Identities=42% Similarity=0.662 Sum_probs=30.8
Q ss_pred EEEECCCCchHHHhhhhcC-CCeEEEEeccCCCC
Q 009272 49 YIVIGGGTAGCPLAASLSQ-NASVLLLERGDSPY 81 (538)
Q Consensus 49 vIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~~ 81 (538)
++|||+|+.|+-+|..|++ |.+|.|+|+.+...
T Consensus 2 vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~ 35 (80)
T PF00070_consen 2 VVVIGGGFIGIELAEALAELGKEVTLIERSDRLL 35 (80)
T ss_dssp EEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred EEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh
Confidence 7999999999999999999 99999999998753
No 268
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=96.55 E-value=0.0017 Score=71.64 Aligned_cols=35 Identities=29% Similarity=0.392 Sum_probs=32.4
Q ss_pred CCccEEEECCCCchHHHhhhhcC-CCeEEEEeccCC
Q 009272 45 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 79 (538)
Q Consensus 45 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (538)
...+|+|||||++|+++|..|++ |++|+|+|+.+.
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~ 361 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPE 361 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 45799999999999999999999 999999999865
No 269
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=96.49 E-value=0.002 Score=72.64 Aligned_cols=36 Identities=33% Similarity=0.427 Sum_probs=32.8
Q ss_pred CCccEEEECCCCchHHHhhhhcC-CCeEEEEeccCCC
Q 009272 45 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSP 80 (538)
Q Consensus 45 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~ 80 (538)
+..+|+|||||++|+++|+.|++ |++|+|+|+.+..
T Consensus 538 tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~ 574 (1019)
T PRK09853 538 SRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENA 574 (1019)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCeEEEEeccccc
Confidence 45689999999999999999999 9999999998754
No 270
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=96.44 E-value=0.028 Score=57.71 Aligned_cols=33 Identities=33% Similarity=0.563 Sum_probs=30.3
Q ss_pred ccEEEECCCCchHHHhhhhcC-CCeEEEEeccCC
Q 009272 47 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 79 (538)
Q Consensus 47 ~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (538)
-.++|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus 142 ~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~ 175 (377)
T PRK04965 142 QRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAAS 175 (377)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCc
Confidence 469999999999999999999 999999999864
No 271
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=96.40 E-value=0.018 Score=60.81 Aligned_cols=33 Identities=27% Similarity=0.499 Sum_probs=29.6
Q ss_pred ccEEEECCCCchHHHhhhhcC-CCeEEEEeccCC
Q 009272 47 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 79 (538)
Q Consensus 47 ~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (538)
-+++|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus 171 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~ 204 (461)
T TIGR01350 171 ESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDR 204 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCC
Confidence 479999999999999999999 999999998864
No 272
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=96.35 E-value=0.0026 Score=67.05 Aligned_cols=37 Identities=30% Similarity=0.367 Sum_probs=33.4
Q ss_pred CCCccEEEECCCCchHHHhhhhcC-CCeEEEEeccCCC
Q 009272 44 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSP 80 (538)
Q Consensus 44 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~ 80 (538)
....+|+|||+|++|+.+|..|++ |++|+|+|+.+..
T Consensus 138 ~~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~ 175 (457)
T PRK11749 138 KTGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKA 175 (457)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCC
Confidence 345799999999999999999999 9999999998754
No 273
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=96.32 E-value=0.0032 Score=70.66 Aligned_cols=36 Identities=28% Similarity=0.339 Sum_probs=32.5
Q ss_pred CCCccEEEECCCCchHHHhhhhcC-CCeEEEEeccCC
Q 009272 44 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 79 (538)
Q Consensus 44 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (538)
....+|+|||||++|+++|..|++ |++|+|+|+.+.
T Consensus 429 ~~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~ 465 (752)
T PRK12778 429 KNGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHE 465 (752)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 346799999999999999999999 999999998654
No 274
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=96.23 E-value=0.0039 Score=63.18 Aligned_cols=37 Identities=32% Similarity=0.438 Sum_probs=32.5
Q ss_pred CCccEEEECCCCchHHHhhhhcC-C-CeEEEEeccCCCC
Q 009272 45 SYYDYIVIGGGTAGCPLAASLSQ-N-ASVLLLERGDSPY 81 (538)
Q Consensus 45 ~~~DvIIVGsG~aG~~~A~~La~-g-~~VlvlE~G~~~~ 81 (538)
...-++|||+|.+|+++|.+|-+ | .+|+|+|+.++..
T Consensus 20 ~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIG 58 (498)
T KOG0685|consen 20 GNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIG 58 (498)
T ss_pred CCceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccC
Confidence 34579999999999999999997 5 6899999998765
No 275
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=96.21 E-value=0.0039 Score=68.56 Aligned_cols=36 Identities=25% Similarity=0.338 Sum_probs=33.0
Q ss_pred CCccEEEECCCCchHHHhhhhcC-CCeEEEEeccCCC
Q 009272 45 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSP 80 (538)
Q Consensus 45 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~ 80 (538)
...+|+|||+|++|+.+|..|++ |++|+|+|+.+..
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~ 228 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQA 228 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 45799999999999999999999 9999999998764
No 276
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=96.21 E-value=0.0043 Score=61.65 Aligned_cols=37 Identities=46% Similarity=0.827 Sum_probs=32.0
Q ss_pred CCCCccEEEECCCCchHHHhhhhcC-----CCeEEEEeccCC
Q 009272 43 PVSYYDYIVIGGGTAGCPLAASLSQ-----NASVLLLERGDS 79 (538)
Q Consensus 43 ~~~~~DvIIVGsG~aG~~~A~~La~-----g~~VlvlE~G~~ 79 (538)
..+.|||||||||+.|...|..|.. .+||+++|.+..
T Consensus 33 ~~~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s 74 (481)
T KOG3855|consen 33 DTAKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDS 74 (481)
T ss_pred CcccCCEEEECCchHHHHHHHHhccCCccchheeeEEecccC
Confidence 3458999999999999999999876 479999999954
No 277
>PLN03000 amine oxidase
Probab=96.20 E-value=0.0036 Score=69.43 Aligned_cols=38 Identities=29% Similarity=0.430 Sum_probs=34.6
Q ss_pred CCccEEEECCCCchHHHhhhhcC-CCeEEEEeccCCCCC
Q 009272 45 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSPYG 82 (538)
Q Consensus 45 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~~~ 82 (538)
...||+|||+|++|+.+|..|++ |++|+|+|+.+....
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGG 221 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGG 221 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCC
Confidence 46899999999999999999999 999999999987654
No 278
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=96.18 E-value=0.039 Score=57.00 Aligned_cols=33 Identities=33% Similarity=0.522 Sum_probs=30.3
Q ss_pred ccEEEECCCCchHHHhhhhcC-CCeEEEEeccCC
Q 009272 47 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 79 (538)
Q Consensus 47 ~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (538)
-.++|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus 145 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~ 178 (396)
T PRK09754 145 RSVVIVGAGTIGLELAASATQRRCKVTVIELAAT 178 (396)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCc
Confidence 369999999999999999999 999999999874
No 279
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.16 E-value=0.0024 Score=61.88 Aligned_cols=60 Identities=20% Similarity=0.293 Sum_probs=48.8
Q ss_pred cCCCCeEEEeccEEEEEEecCCCCCCCeEEEEEEEeC-CCCeEEEEeccCCCceEEEcCCCcCCHHHHHHc
Q 009272 221 ANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDA-TDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLS 290 (538)
Q Consensus 221 ~~~~~~~i~~~~~V~~I~~~~~~~~~~~~~gV~~~~~-~g~~~~~~~~~~~a~~VVLaaGai~tp~lLl~S 290 (538)
..-+|++|++++.-+.|.-|++ +++|+.|++. .|+.+.+.+ ..|++--|-+.++.+|.-+
T Consensus 400 ~sl~Nv~ii~na~Ttei~Gdg~-----kV~Gl~Y~dr~sge~~~l~L-----eGvFVqIGL~PNT~WLkg~ 460 (520)
T COG3634 400 RSLPNVTIITNAQTTEVKGDGD-----KVTGLEYRDRVSGEEHHLEL-----EGVFVQIGLLPNTEWLKGA 460 (520)
T ss_pred hcCCCcEEEecceeeEEecCCc-----eecceEEEeccCCceeEEEe-----eeeEEEEecccChhHhhch
Confidence 4458999999999999998877 9999999975 466677654 6788888888888887754
No 280
>PLN02976 amine oxidase
Probab=96.16 E-value=0.0039 Score=71.83 Aligned_cols=38 Identities=34% Similarity=0.367 Sum_probs=34.1
Q ss_pred CCCccEEEECCCCchHHHhhhhcC-CCeEEEEeccCCCC
Q 009272 44 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSPY 81 (538)
Q Consensus 44 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~~ 81 (538)
...+||+|||+|++|+.+|++|++ |.+|+|+|+.+...
T Consensus 691 ~~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vG 729 (1713)
T PLN02976 691 VDRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIG 729 (1713)
T ss_pred CCCCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCC
Confidence 346899999999999999999999 99999999987654
No 281
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=96.16 E-value=0.0052 Score=61.40 Aligned_cols=38 Identities=29% Similarity=0.339 Sum_probs=32.4
Q ss_pred CCCccEEEECCCCchHHHhhhhcC-C--CeEEEEeccCCCC
Q 009272 44 VSYYDYIVIGGGTAGCPLAASLSQ-N--ASVLLLERGDSPY 81 (538)
Q Consensus 44 ~~~~DvIIVGsG~aG~~~A~~La~-g--~~VlvlE~G~~~~ 81 (538)
....+|+|||+|++|+++|+.|++ + ..|.|.|++++..
T Consensus 9 ~~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvG 49 (491)
T KOG1276|consen 9 VSGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVG 49 (491)
T ss_pred eecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCccc
Confidence 345789999999999999999999 4 4677899999854
No 282
>PLN02852 ferredoxin-NADP+ reductase
Probab=96.15 E-value=0.0052 Score=64.61 Aligned_cols=37 Identities=32% Similarity=0.451 Sum_probs=32.6
Q ss_pred CCccEEEECCCCchHHHhhhhcC---CCeEEEEeccCCCC
Q 009272 45 SYYDYIVIGGGTAGCPLAASLSQ---NASVLLLERGDSPY 81 (538)
Q Consensus 45 ~~~DvIIVGsG~aG~~~A~~La~---g~~VlvlE~G~~~~ 81 (538)
....|+|||||++|+.+|..|++ |++|.|+|+-+...
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pg 64 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPF 64 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCc
Confidence 35679999999999999999984 89999999998654
No 283
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=96.15 E-value=0.057 Score=57.12 Aligned_cols=60 Identities=15% Similarity=0.141 Sum_probs=38.4
Q ss_pred CCCCeEEEeccEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCceEEEcCCCcCCHHH--HHHcCC
Q 009272 222 NPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQL--LMLSGV 292 (538)
Q Consensus 222 ~~~~~~i~~~~~V~~I~~~~~~~~~~~~~gV~~~~~~g~~~~~~~~~~~a~~VVLaaGai~tp~l--Ll~SGi 292 (538)
++.|++|++++.|+++..+++ .+ .+.+.+.+|+..++ .++.||+|+|...+..+ |..+|+
T Consensus 224 ~~~gV~i~~~~~v~~i~~~~~-----~~-~v~~~~~~g~~~~i-----~~D~vi~a~G~~pn~~~l~l~~~g~ 285 (466)
T PRK07818 224 KKLGVKILTGTKVESIDDNGS-----KV-TVTVSKKDGKAQEL-----EADKVLQAIGFAPRVEGYGLEKTGV 285 (466)
T ss_pred HHCCCEEEECCEEEEEEEeCC-----eE-EEEEEecCCCeEEE-----EeCEEEECcCcccCCCCCCchhcCc
Confidence 345899999999999975433 22 24443235544444 47999999997666554 334444
No 284
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=96.07 E-value=0.006 Score=61.98 Aligned_cols=36 Identities=25% Similarity=0.326 Sum_probs=32.7
Q ss_pred CCccEEEECCCCchHHHhhhhcC-CCeEEEEeccCCC
Q 009272 45 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSP 80 (538)
Q Consensus 45 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~ 80 (538)
...+|+|||+|++|+.+|..|++ |.+|+|+|+.+..
T Consensus 17 ~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~ 53 (352)
T PRK12770 17 TGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEP 53 (352)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence 34689999999999999999999 9999999998764
No 285
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=95.91 E-value=0.045 Score=58.07 Aligned_cols=53 Identities=23% Similarity=0.304 Sum_probs=36.8
Q ss_pred CCCeEEEeccEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCceEEEcCCCcCCHHH
Q 009272 223 PSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQL 286 (538)
Q Consensus 223 ~~~~~i~~~~~V~~I~~~~~~~~~~~~~gV~~~~~~g~~~~~~~~~~~a~~VVLaaGai~tp~l 286 (538)
+.|+++++++.|++|..+++ .+ .|++.+.+|+...+ .++.||+|+|...+...
T Consensus 236 ~~gi~i~~~~~v~~i~~~~~-----~v-~v~~~~~~g~~~~i-----~~D~vl~a~G~~p~~~~ 288 (475)
T PRK06327 236 KQGLDIHLGVKIGEIKTGGK-----GV-SVAYTDADGEAQTL-----EVDKLIVSIGRVPNTDG 288 (475)
T ss_pred HcCcEEEeCcEEEEEEEcCC-----EE-EEEEEeCCCceeEE-----EcCEEEEccCCccCCCC
Confidence 45889999999999986654 33 35555444544444 47999999997766553
No 286
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=95.88 E-value=0.0059 Score=68.26 Aligned_cols=34 Identities=26% Similarity=0.383 Sum_probs=31.3
Q ss_pred CCccEEEECCCCchHHHhhhhcC-CCeEEEEeccC
Q 009272 45 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD 78 (538)
Q Consensus 45 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (538)
....|+|||+|+||+.+|+.|++ |++|+|+|+.+
T Consensus 382 tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~ 416 (1028)
T PRK06567 382 TNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLK 416 (1028)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCeEEEEcccc
Confidence 45689999999999999999999 99999999864
No 287
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=95.87 E-value=0.0061 Score=64.33 Aligned_cols=36 Identities=28% Similarity=0.373 Sum_probs=32.9
Q ss_pred CCccEEEECCCCchHHHhhhhcC-CCeEEEEeccCCC
Q 009272 45 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSP 80 (538)
Q Consensus 45 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~ 80 (538)
+..+|+|||+|++|+.+|..|++ |.+|+|+|+.+..
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~ 176 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEI 176 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence 45799999999999999999999 9999999998753
No 288
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=95.87 E-value=0.0051 Score=68.98 Aligned_cols=33 Identities=30% Similarity=0.438 Sum_probs=29.9
Q ss_pred cEEEECCCCchHHHhhhhcC---CCeEEEEeccCCC
Q 009272 48 DYIVIGGGTAGCPLAASLSQ---NASVLLLERGDSP 80 (538)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~---g~~VlvlE~G~~~ 80 (538)
+|+|||+|++|+++|..|++ |++|+|+|+.+..
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~ 37 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPY 37 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCC
Confidence 69999999999999999998 5899999998753
No 289
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=95.82 E-value=0.045 Score=57.97 Aligned_cols=33 Identities=27% Similarity=0.537 Sum_probs=28.5
Q ss_pred ccEEEECCCCchHHHhhhhcC-CCeEEEEeccCC
Q 009272 47 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 79 (538)
Q Consensus 47 ~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (538)
-.++|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus 181 ~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~ 214 (472)
T PRK05976 181 KSLVIVGGGVIGLEWASMLADFGVEVTVVEAADR 214 (472)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCc
Confidence 368999999999999999988 889999988864
No 290
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=95.73 E-value=0.039 Score=62.12 Aligned_cols=31 Identities=13% Similarity=0.293 Sum_probs=27.2
Q ss_pred EEEECCCCchHHHhhhhcC----CCeEEEEeccCC
Q 009272 49 YIVIGGGTAGCPLAASLSQ----NASVLLLERGDS 79 (538)
Q Consensus 49 vIIVGsG~aG~~~A~~La~----g~~VlvlE~G~~ 79 (538)
+||||+|++|+.+|.+|.+ +.+|+|+|+.+.
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~ 35 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPH 35 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCC
Confidence 5899999999999998765 469999999875
No 291
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=95.68 E-value=0.066 Score=60.55 Aligned_cols=57 Identities=18% Similarity=0.208 Sum_probs=41.5
Q ss_pred CCCeEEEeccEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCceEEEcCCCcCCHHHHHHcCC
Q 009272 223 PSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGV 292 (538)
Q Consensus 223 ~~~~~i~~~~~V~~I~~~~~~~~~~~~~gV~~~~~~g~~~~~~~~~~~a~~VVLaaGai~tp~lLl~SGi 292 (538)
+.|+++++++.|++|..++.+ ....|.+. +|+. + .++.||+|+|.-.+..|+..+|+
T Consensus 199 ~~GV~v~~~~~v~~I~~~~~~----~~~~v~~~--dG~~--i-----~~D~Vv~A~G~rPn~~L~~~~Gl 255 (847)
T PRK14989 199 SMGVRVHTSKNTLEIVQEGVE----ARKTMRFA--DGSE--L-----EVDFIVFSTGIRPQDKLATQCGL 255 (847)
T ss_pred HCCCEEEcCCeEEEEEecCCC----ceEEEEEC--CCCE--E-----EcCEEEECCCcccCchHHhhcCc
Confidence 458899999999999764432 44555554 5653 2 47999999999888887777776
No 292
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=95.65 E-value=0.0087 Score=63.47 Aligned_cols=35 Identities=31% Similarity=0.463 Sum_probs=32.3
Q ss_pred CCccEEEECCCCchHHHhhhhcC-CCeEEEEeccCC
Q 009272 45 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 79 (538)
Q Consensus 45 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (538)
...+|+|||+|++|+.+|..|++ |.+|+|+|+.+.
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~ 177 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDR 177 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCC
Confidence 34799999999999999999999 999999999875
No 293
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=95.59 E-value=0.0096 Score=65.46 Aligned_cols=37 Identities=27% Similarity=0.264 Sum_probs=33.5
Q ss_pred CCccEEEECCCCchHHHhhhhcC-CCeEEEEeccCCCC
Q 009272 45 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSPY 81 (538)
Q Consensus 45 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~~ 81 (538)
...+|+|||+|++|+++|..|++ |++|+|+|+.+...
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~G 346 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIG 346 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCC
Confidence 35789999999999999999999 99999999998643
No 294
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.59 E-value=0.12 Score=53.03 Aligned_cols=33 Identities=27% Similarity=0.503 Sum_probs=28.7
Q ss_pred ccEEEECCCCchHHHhhhhcC----CCeEEEEeccCC
Q 009272 47 YDYIVIGGGTAGCPLAASLSQ----NASVLLLERGDS 79 (538)
Q Consensus 47 ~DvIIVGsG~aG~~~A~~La~----g~~VlvlE~G~~ 79 (538)
++|+|||+|++|..+|.+|.+ ..+|.|+|.-+.
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~ 38 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPN 38 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccc
Confidence 789999999999999999987 234999998875
No 295
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=95.57 E-value=0.071 Score=56.00 Aligned_cols=33 Identities=18% Similarity=0.364 Sum_probs=29.8
Q ss_pred ccEEEECCCCchHHHhhhhcC-CCeEEEEeccCC
Q 009272 47 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 79 (538)
Q Consensus 47 ~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (538)
-.++|||+|..|+-+|..|++ |.+|.++|+++.
T Consensus 150 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~ 183 (444)
T PRK09564 150 KNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDR 183 (444)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcc
Confidence 469999999999999999999 999999988764
No 296
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=95.51 E-value=0.13 Score=54.47 Aligned_cols=32 Identities=31% Similarity=0.516 Sum_probs=25.8
Q ss_pred cEEEECCCCchHHHhhhhcC-CCeEEEEeccCC
Q 009272 48 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 79 (538)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (538)
.++|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus 174 ~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~ 206 (462)
T PRK06416 174 SLVVIGGGYIGVEFASAYASLGAEVTIVEALPR 206 (462)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCC
Confidence 58888888888888888887 888888887764
No 297
>PRK06370 mercuric reductase; Validated
Probab=95.49 E-value=0.094 Score=55.44 Aligned_cols=32 Identities=31% Similarity=0.634 Sum_probs=27.3
Q ss_pred cEEEECCCCchHHHhhhhcC-CCeEEEEeccCC
Q 009272 48 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 79 (538)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (538)
.++|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus 173 ~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~ 205 (463)
T PRK06370 173 HLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPR 205 (463)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCC
Confidence 68889999999888888888 888888888764
No 298
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=95.43 E-value=0.097 Score=55.30 Aligned_cols=32 Identities=28% Similarity=0.581 Sum_probs=26.7
Q ss_pred cEEEECCCCchHHHhhhhcC-CCeEEEEeccCC
Q 009272 48 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 79 (538)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (538)
.++|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus 177 ~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~ 209 (461)
T PRK05249 177 SLIIYGAGVIGCEYASIFAALGVKVTLINTRDR 209 (461)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEecCCC
Confidence 58888888888888888888 888888888763
No 299
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=95.38 E-value=0.18 Score=54.06 Aligned_cols=55 Identities=16% Similarity=0.291 Sum_probs=41.5
Q ss_pred CCeEEEeccEEEEEEecCCCCCCCeEEEEEEEeC-CCCeEEEEeccCCCceEEEcCCCcCCHHHHH
Q 009272 224 SGLTVLLHASVHKILFRNKGKARPVAHGVVFRDA-TDAEHIAYLRNGPKNEIIVSAGALGSPQLLM 288 (538)
Q Consensus 224 ~~~~i~~~~~V~~I~~~~~~~~~~~~~gV~~~~~-~g~~~~~~~~~~~a~~VVLaaGai~tp~lLl 288 (538)
.|++++.++.|++|.-+++ ++.+|.+.+. +++..++ .++.||+|.|...++.+|.
T Consensus 401 ~gV~i~~~~~v~~i~~~~~-----~v~~v~~~~~~~~~~~~i-----~~D~vi~a~G~~Pn~~~l~ 456 (515)
T TIGR03140 401 PNVDILTSAQTTEIVGDGD-----KVTGIRYQDRNSGEEKQL-----DLDGVFVQIGLVPNTEWLK 456 (515)
T ss_pred CCCEEEECCeeEEEEcCCC-----EEEEEEEEECCCCcEEEE-----EcCEEEEEeCCcCCchHHh
Confidence 5889999999999976544 7888888753 3444444 4799999999887777664
No 300
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=95.38 E-value=0.13 Score=54.33 Aligned_cols=33 Identities=36% Similarity=0.646 Sum_probs=29.8
Q ss_pred ccEEEECCCCchHHHhhhhcC-CCeEEEEeccCC
Q 009272 47 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 79 (538)
Q Consensus 47 ~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (538)
-.++|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus 167 ~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~ 200 (463)
T TIGR02053 167 ESLAVIGGGAIGVELAQAFARLGSEVTILQRSDR 200 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCc
Confidence 469999999999999999999 999999998864
No 301
>PTZ00188 adrenodoxin reductase; Provisional
Probab=95.37 E-value=0.016 Score=60.40 Aligned_cols=36 Identities=22% Similarity=0.358 Sum_probs=31.5
Q ss_pred CccEEEECCCCchHHHhhhhc-C-CCeEEEEeccCCCC
Q 009272 46 YYDYIVIGGGTAGCPLAASLS-Q-NASVLLLERGDSPY 81 (538)
Q Consensus 46 ~~DvIIVGsG~aG~~~A~~La-~-g~~VlvlE~G~~~~ 81 (538)
..-|.|||||++|+.+|.+|. + |.+|.|+|+-+.+.
T Consensus 39 ~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pg 76 (506)
T PTZ00188 39 PFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPY 76 (506)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCc
Confidence 346999999999999999865 5 99999999998765
No 302
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=95.34 E-value=0.18 Score=54.07 Aligned_cols=56 Identities=18% Similarity=0.293 Sum_probs=43.2
Q ss_pred CCeEEEeccEEEEEEecCCCCCCCeEEEEEEEeC-CCCeEEEEeccCCCceEEEcCCCcCCHHHHHH
Q 009272 224 SGLTVLLHASVHKILFRNKGKARPVAHGVVFRDA-TDAEHIAYLRNGPKNEIIVSAGALGSPQLLML 289 (538)
Q Consensus 224 ~~~~i~~~~~V~~I~~~~~~~~~~~~~gV~~~~~-~g~~~~~~~~~~~a~~VVLaaGai~tp~lLl~ 289 (538)
.|++++.++.|++|..+++ ++++|++.+. +++..++ .++.|+++.|...++.++..
T Consensus 400 ~gI~i~~~~~v~~i~~~~g-----~v~~v~~~~~~~g~~~~i-----~~D~v~~~~G~~p~~~~l~~ 456 (517)
T PRK15317 400 PNVTIITNAQTTEVTGDGD-----KVTGLTYKDRTTGEEHHL-----ELEGVFVQIGLVPNTEWLKG 456 (517)
T ss_pred CCcEEEECcEEEEEEcCCC-----cEEEEEEEECCCCcEEEE-----EcCEEEEeECCccCchHHhh
Confidence 5899999999999986544 8888888753 3544444 47999999999887776644
No 303
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=95.29 E-value=0.11 Score=54.30 Aligned_cols=32 Identities=31% Similarity=0.684 Sum_probs=30.6
Q ss_pred cEEEECCCCchHHHhhhhcC-CCeEEEEeccCC
Q 009272 48 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 79 (538)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (538)
.++|||+|+.|+-.|.-+++ |.+|.|||+++.
T Consensus 175 ~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~ 207 (454)
T COG1249 175 SLVIVGGGYIGLEFASVFAALGSKVTVVERGDR 207 (454)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Confidence 49999999999999999999 999999999986
No 304
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=95.29 E-value=0.083 Score=55.56 Aligned_cols=32 Identities=22% Similarity=0.379 Sum_probs=28.2
Q ss_pred cEEEECCCCchHHHhhhhcC-CCeEEEEeccCC
Q 009272 48 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 79 (538)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (538)
.++|||+|..|+-+|..|++ |.+|.|||+++.
T Consensus 168 ~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ 200 (450)
T TIGR01421 168 RVVIVGAGYIAVELAGVLHGLGSETHLVIRHER 200 (450)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Confidence 68999999999999999988 899999988864
No 305
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=95.28 E-value=0.092 Score=55.40 Aligned_cols=32 Identities=28% Similarity=0.659 Sum_probs=26.7
Q ss_pred cEEEECCCCchHHHhhhhcC-CCeEEEEeccCC
Q 009272 48 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 79 (538)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (538)
.++|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus 172 ~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ 204 (458)
T PRK06912 172 SLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQ 204 (458)
T ss_pred cEEEECCCHHHHHHHHHHHHcCCeEEEEecCCC
Confidence 68888888888888888888 888888888763
No 306
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=95.24 E-value=0.1 Score=55.27 Aligned_cols=32 Identities=25% Similarity=0.438 Sum_probs=26.2
Q ss_pred cEEEECCCCchHHHhhhhcC-CCeEEEEeccCC
Q 009272 48 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 79 (538)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (538)
.++|||+|..|+-+|..|++ |.+|.|||+++.
T Consensus 176 ~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~ 208 (471)
T PRK06467 176 RLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQ 208 (471)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCCEEEEecCCC
Confidence 68888888888888888888 888888887763
No 307
>PRK10262 thioredoxin reductase; Provisional
Probab=95.18 E-value=0.28 Score=48.99 Aligned_cols=60 Identities=12% Similarity=0.160 Sum_probs=41.9
Q ss_pred CCCCeEEEeccEEEEEEecCCCCCCCeEEEEEEEeCC--CCeEEEEeccCCCceEEEcCCCcCCHHHHHHcCC
Q 009272 222 NPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDAT--DAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGV 292 (538)
Q Consensus 222 ~~~~~~i~~~~~V~~I~~~~~~~~~~~~~gV~~~~~~--g~~~~~~~~~~~a~~VVLaaGai~tp~lLl~SGi 292 (538)
++.|+++++++.+++|.-+++ ++.+|++.+.. +...++ .++.||++.|......++ .+++
T Consensus 196 ~~~gV~i~~~~~v~~v~~~~~-----~~~~v~~~~~~~~~~~~~i-----~~D~vv~a~G~~p~~~l~-~~~l 257 (321)
T PRK10262 196 ENGNIILHTNRTLEEVTGDQM-----GVTGVRLRDTQNSDNIESL-----DVAGLFVAIGHSPNTAIF-EGQL 257 (321)
T ss_pred cCCCeEEEeCCEEEEEEcCCc-----cEEEEEEEEcCCCCeEEEE-----ECCEEEEEeCCccChhHh-hccc
Confidence 356899999999999976544 67788876532 233344 579999999987666644 3444
No 308
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=95.17 E-value=0.1 Score=58.87 Aligned_cols=55 Identities=24% Similarity=0.363 Sum_probs=40.2
Q ss_pred CCCeEEEeccEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCceEEEcCCCcCCHHHHHHcCC
Q 009272 223 PSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGV 292 (538)
Q Consensus 223 ~~~~~i~~~~~V~~I~~~~~~~~~~~~~gV~~~~~~g~~~~~~~~~~~a~~VVLaaGai~tp~lLl~SGi 292 (538)
+.|+++++++.|++|..+ + ++.+|.+. +|+. + .++.||+|+|.-.+..++..+|+
T Consensus 194 ~~GV~v~~~~~v~~i~~~-~-----~~~~v~~~--dG~~--i-----~~D~Vi~a~G~~Pn~~la~~~gl 248 (785)
T TIGR02374 194 QKGLTFLLEKDTVEIVGA-T-----KADRIRFK--DGSS--L-----EADLIVMAAGIRPNDELAVSAGI 248 (785)
T ss_pred HcCCEEEeCCceEEEEcC-C-----ceEEEEEC--CCCE--E-----EcCEEEECCCCCcCcHHHHhcCC
Confidence 458889999999888643 2 56677665 5643 2 47999999998877777766766
No 309
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=95.11 E-value=0.015 Score=63.01 Aligned_cols=36 Identities=33% Similarity=0.434 Sum_probs=32.3
Q ss_pred CCccEEEECCCCchHHHhhhhcC-CCeEEEEeccCCC
Q 009272 45 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSP 80 (538)
Q Consensus 45 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~ 80 (538)
..-+|+|||+|++|+.+|..|++ |.+|+|+|+.+..
T Consensus 136 ~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~ 172 (564)
T PRK12771 136 TGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKL 172 (564)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 34689999999999999999999 9999999987654
No 310
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=95.04 E-value=0.24 Score=52.32 Aligned_cols=55 Identities=18% Similarity=0.212 Sum_probs=36.7
Q ss_pred CCCeEEEeccEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCceEEEcCCCcCCHHH--HHHcCC
Q 009272 223 PSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQL--LMLSGV 292 (538)
Q Consensus 223 ~~~~~i~~~~~V~~I~~~~~~~~~~~~~gV~~~~~~g~~~~~~~~~~~a~~VVLaaGai~tp~l--Ll~SGi 292 (538)
+.|++++++++|++|..+++ . +.+...+|+. + .++.||+|.|...+..+ |..+|+
T Consensus 230 ~~gV~i~~~~~v~~v~~~~~-----~---~~v~~~~g~~--l-----~~D~vl~a~G~~pn~~~l~l~~~gl 286 (466)
T PRK07845 230 RRGMTVLKRSRAESVERTGD-----G---VVVTLTDGRT--V-----EGSHALMAVGSVPNTAGLGLEEAGV 286 (466)
T ss_pred HCCcEEEcCCEEEEEEEeCC-----E---EEEEECCCcE--E-----EecEEEEeecCCcCCCCCCchhhCc
Confidence 45889999999999976554 3 3333234543 2 46999999998776664 344444
No 311
>PLN02507 glutathione reductase
Probab=95.03 E-value=0.14 Score=54.56 Aligned_cols=49 Identities=6% Similarity=0.101 Sum_probs=33.9
Q ss_pred CCCeEEEeccEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCceEEEcCCCcCCHHH
Q 009272 223 PSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQL 286 (538)
Q Consensus 223 ~~~~~i~~~~~V~~I~~~~~~~~~~~~~gV~~~~~~g~~~~~~~~~~~a~~VVLaaGai~tp~l 286 (538)
+.|+++++++.|++|..+++ . +.+...+|+. + .++.||+|.|...+..+
T Consensus 256 ~~GI~i~~~~~V~~i~~~~~-----~---~~v~~~~g~~--i-----~~D~vl~a~G~~pn~~~ 304 (499)
T PLN02507 256 GRGINLHPRTNLTQLTKTEG-----G---IKVITDHGEE--F-----VADVVLFATGRAPNTKR 304 (499)
T ss_pred hCCCEEEeCCEEEEEEEeCC-----e---EEEEECCCcE--E-----EcCEEEEeecCCCCCCC
Confidence 45889999999999986544 2 2233334543 3 47999999998766665
No 312
>PRK06116 glutathione reductase; Validated
Probab=95.01 E-value=0.14 Score=53.85 Aligned_cols=50 Identities=10% Similarity=0.126 Sum_probs=33.9
Q ss_pred CCCCeEEEeccEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCceEEEcCCCcCCHH
Q 009272 222 NPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQ 285 (538)
Q Consensus 222 ~~~~~~i~~~~~V~~I~~~~~~~~~~~~~gV~~~~~~g~~~~~~~~~~~a~~VVLaaGai~tp~ 285 (538)
++.|+++++++.|++|..++++ .+ .|++. +|+. + .++.||+|+|.-.+..
T Consensus 219 ~~~GV~i~~~~~V~~i~~~~~g----~~-~v~~~--~g~~--i-----~~D~Vv~a~G~~p~~~ 268 (450)
T PRK06116 219 EKKGIRLHTNAVPKAVEKNADG----SL-TLTLE--DGET--L-----TVDCLIWAIGREPNTD 268 (450)
T ss_pred HHCCcEEECCCEEEEEEEcCCc----eE-EEEEc--CCcE--E-----EeCEEEEeeCCCcCCC
Confidence 3468899999999999876542 22 24333 4543 2 4699999999765554
No 313
>PRK14727 putative mercuric reductase; Provisional
Probab=94.97 E-value=0.18 Score=53.50 Aligned_cols=50 Identities=14% Similarity=0.249 Sum_probs=34.4
Q ss_pred CCCCeEEEeccEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCceEEEcCCCcCCHHHH
Q 009272 222 NPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLL 287 (538)
Q Consensus 222 ~~~~~~i~~~~~V~~I~~~~~~~~~~~~~gV~~~~~~g~~~~~~~~~~~a~~VVLaaGai~tp~lL 287 (538)
++.|+++++++.|+++..+++ . +.+...+++ + .++.||+|+|...+..+|
T Consensus 239 ~~~GV~i~~~~~V~~i~~~~~-----~---~~v~~~~g~---i-----~aD~VlvA~G~~pn~~~l 288 (479)
T PRK14727 239 EKEGIEVLNNTQASLVEHDDN-----G---FVLTTGHGE---L-----RAEKLLISTGRHANTHDL 288 (479)
T ss_pred HhCCCEEEcCcEEEEEEEeCC-----E---EEEEEcCCe---E-----EeCEEEEccCCCCCccCC
Confidence 345889999999999986544 2 333332332 2 469999999998777653
No 314
>PRK13984 putative oxidoreductase; Provisional
Probab=94.96 E-value=0.02 Score=62.74 Aligned_cols=37 Identities=24% Similarity=0.291 Sum_probs=33.5
Q ss_pred CCCccEEEECCCCchHHHhhhhcC-CCeEEEEeccCCC
Q 009272 44 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSP 80 (538)
Q Consensus 44 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~ 80 (538)
.+..+|+|||+|++|+.+|..|++ |.+|+|+|+.+..
T Consensus 281 ~~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~ 318 (604)
T PRK13984 281 KKNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKP 318 (604)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 346789999999999999999999 9999999998754
No 315
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=94.86 E-value=0.13 Score=54.04 Aligned_cols=51 Identities=16% Similarity=0.315 Sum_probs=34.5
Q ss_pred cCCCCeEEEeccEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCceEEEcCCCcCCHHHH
Q 009272 221 ANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLL 287 (538)
Q Consensus 221 ~~~~~~~i~~~~~V~~I~~~~~~~~~~~~~gV~~~~~~g~~~~~~~~~~~a~~VVLaaGai~tp~lL 287 (538)
+++.|+++++++.|++|..+++ . +.+...+++ + .++.||+|+|...+..+|
T Consensus 209 l~~~gV~v~~~~~v~~i~~~~~-----~---v~v~~~~g~---i-----~~D~vl~a~G~~pn~~~l 259 (441)
T PRK08010 209 LRDQGVDIILNAHVERISHHEN-----Q---VQVHSEHAQ---L-----AVDALLIASGRQPATASL 259 (441)
T ss_pred HHhCCCEEEeCCEEEEEEEcCC-----E---EEEEEcCCe---E-----EeCEEEEeecCCcCCCCc
Confidence 3456899999999999986543 2 333322332 2 369999999987766543
No 316
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=94.82 E-value=0.029 Score=58.50 Aligned_cols=38 Identities=16% Similarity=0.287 Sum_probs=33.1
Q ss_pred CCCccEEEECCCCchHHHhhhhcC-CCeEEEEeccCCCC
Q 009272 44 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSPY 81 (538)
Q Consensus 44 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~~ 81 (538)
.+..+|||||+|.+|+.+|.+|.+ +.+|+|||+.++..
T Consensus 8 ~~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~~ 46 (424)
T PTZ00318 8 LKKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHML 46 (424)
T ss_pred CCCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCcc
Confidence 345789999999999999999988 78999999887653
No 317
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=94.82 E-value=0.095 Score=53.42 Aligned_cols=48 Identities=29% Similarity=0.459 Sum_probs=34.6
Q ss_pred CCCCeEEEeccEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCceEEEcCCCcCCHHHH
Q 009272 222 NPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLL 287 (538)
Q Consensus 222 ~~~~~~i~~~~~V~~I~~~~~~~~~~~~~gV~~~~~~g~~~~~~~~~~~a~~VVLaaGai~tp~lL 287 (538)
++.|++|++++.|++|..+ +|.+. +|.. ++ +++.||-|||.-.+|-+-
T Consensus 220 ~~~GV~v~l~~~Vt~v~~~----------~v~~~--~g~~-~I-----~~~tvvWaaGv~a~~~~~ 267 (405)
T COG1252 220 EKLGVEVLLGTPVTEVTPD----------GVTLK--DGEE-EI-----PADTVVWAAGVRASPLLK 267 (405)
T ss_pred HHCCCEEEcCCceEEECCC----------cEEEc--cCCe-eE-----ecCEEEEcCCCcCChhhh
Confidence 3568899999999998753 45555 3433 33 589999999987666543
No 318
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=94.79 E-value=0.021 Score=60.00 Aligned_cols=58 Identities=22% Similarity=0.326 Sum_probs=41.3
Q ss_pred hhcCCCCeEEEeccEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCceEEEcCCCcCCHHHHHHcCC
Q 009272 219 EYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGV 292 (538)
Q Consensus 219 ~~~~~~~~~i~~~~~V~~I~~~~~~~~~~~~~gV~~~~~~g~~~~~~~~~~~a~~VVLaaGai~tp~lLl~SGi 292 (538)
..+++.|++++++++|++|.. ++ ++..+.. ++.. + .++.||+|+|...+..+|..+|+
T Consensus 199 ~~l~~~gI~v~~~~~v~~i~~-~~-----~~~~v~~---~~~~--i-----~~d~vi~a~G~~p~~~~l~~~gl 256 (444)
T PRK09564 199 EELRENGVELHLNEFVKSLIG-ED-----KVEGVVT---DKGE--Y-----EADVVIVATGVKPNTEFLEDTGL 256 (444)
T ss_pred HHHHHCCCEEEcCCEEEEEec-CC-----cEEEEEe---CCCE--E-----EcCEEEECcCCCcCHHHHHhcCc
Confidence 355677999999999999953 22 4444443 2322 2 47999999998777778887776
No 319
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=94.79 E-value=0.23 Score=51.90 Aligned_cols=33 Identities=30% Similarity=0.610 Sum_probs=29.9
Q ss_pred ccEEEECCCCchHHHhhhhcC-CCeEEEEeccCC
Q 009272 47 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 79 (538)
Q Consensus 47 ~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (538)
-.++|||+|..|+-+|..|++ |.+|.++++++.
T Consensus 138 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~ 171 (427)
T TIGR03385 138 ENVVIIGGGYIGIEMAEALRERGKNVTLIHRSER 171 (427)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcc
Confidence 369999999999999999999 999999998864
No 320
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=94.75 E-value=0.024 Score=58.55 Aligned_cols=59 Identities=14% Similarity=0.259 Sum_probs=41.3
Q ss_pred HhhcCCCCeEEEeccEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCceEEEcCCCcCCHHHHHHcCC
Q 009272 218 LEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGV 292 (538)
Q Consensus 218 l~~~~~~~~~i~~~~~V~~I~~~~~~~~~~~~~gV~~~~~~g~~~~~~~~~~~a~~VVLaaGai~tp~lLl~SGi 292 (538)
....++.|+++++++.|+++.. ++ . ..|++ .+|+. + .++.||+|+|...+..++..+|+
T Consensus 193 ~~~l~~~GV~i~~~~~V~~i~~-~~-----~-~~v~l--~~g~~--i-----~aD~Vv~a~G~~pn~~l~~~~gl 251 (396)
T PRK09754 193 LQRHQQAGVRILLNNAIEHVVD-GE-----K-VELTL--QSGET--L-----QADVVIYGIGISANDQLAREANL 251 (396)
T ss_pred HHHHHHCCCEEEeCCeeEEEEc-CC-----E-EEEEE--CCCCE--E-----ECCEEEECCCCChhhHHHHhcCC
Confidence 3345567999999999999875 22 2 22433 35643 2 47999999998877777766766
No 321
>PRK12831 putative oxidoreductase; Provisional
Probab=94.72 E-value=0.16 Score=53.66 Aligned_cols=31 Identities=26% Similarity=0.381 Sum_probs=28.2
Q ss_pred cEEEECCCCchHHHhhhhcC-CCeEEEEeccC
Q 009272 48 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGD 78 (538)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (538)
.|+|||+|..|+-+|..|.+ |.+|.|+++..
T Consensus 283 ~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~ 314 (464)
T PRK12831 283 KVAVVGGGNVAMDAARTALRLGAEVHIVYRRS 314 (464)
T ss_pred eEEEECCcHHHHHHHHHHHHcCCEEEEEeecC
Confidence 69999999999999999999 98999997654
No 322
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=94.71 E-value=0.2 Score=52.99 Aligned_cols=53 Identities=15% Similarity=0.115 Sum_probs=34.0
Q ss_pred CCCeEEEeccEEEEEEecCCCCCCCeEEEEEEEe-CCCCeEEEEeccCCCceEEEcCCCcCCHHH
Q 009272 223 PSGLTVLLHASVHKILFRNKGKARPVAHGVVFRD-ATDAEHIAYLRNGPKNEIIVSAGALGSPQL 286 (538)
Q Consensus 223 ~~~~~i~~~~~V~~I~~~~~~~~~~~~~gV~~~~-~~g~~~~~~~~~~~a~~VVLaaGai~tp~l 286 (538)
+.|+++++++.|++|..+++ .+ .+.+.+ .+|+...+ .++.||+|.|...+...
T Consensus 227 ~~gV~i~~~~~V~~i~~~~~-----~v-~v~~~~~~~g~~~~i-----~~D~vi~a~G~~pn~~~ 280 (466)
T PRK06115 227 KQGMKFKLGSKVTGATAGAD-----GV-SLTLEPAAGGAAETL-----QADYVLVAIGRRPYTQG 280 (466)
T ss_pred hcCCEEEECcEEEEEEEcCC-----eE-EEEEEEcCCCceeEE-----EeCEEEEccCCcccccc
Confidence 45889999999999976543 22 233332 12433344 47999999997655543
No 323
>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=94.66 E-value=0.031 Score=55.53 Aligned_cols=46 Identities=33% Similarity=0.447 Sum_probs=39.4
Q ss_pred CCCCccEEEECCCCchHHHhhhhcC-CCeEEEEeccCCCCCCCCccc
Q 009272 43 PVSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSPYGNPNITN 88 (538)
Q Consensus 43 ~~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~~~~~~~~~ 88 (538)
|.++|||||+|.|..=|+++..|+- |.+||.++|.++.+.......
T Consensus 1 mdeeyDvivlGTgl~ecilS~~Ls~~gkkVLhiDrN~yYG~~saslt 47 (440)
T KOG1439|consen 1 MDEEYDVIVLGTGLTECILSGALSVDGKKVLHIDRNDYYGGESASLT 47 (440)
T ss_pred CCCceeEEEEcCCchhheeeeeeeecCcEEEEEeCCCCCCcccccee
Confidence 3456999999999999999999999 999999999999876554433
No 324
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=94.58 E-value=0.18 Score=53.08 Aligned_cols=49 Identities=12% Similarity=0.157 Sum_probs=32.9
Q ss_pred CCCeEEEeccEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCceEEEcCCCcCCHHH
Q 009272 223 PSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQL 286 (538)
Q Consensus 223 ~~~~~i~~~~~V~~I~~~~~~~~~~~~~gV~~~~~~g~~~~~~~~~~~a~~VVLaaGai~tp~l 286 (538)
+.|+++++++.|++|..+++ . ..|++ .+++. + .++.||+|+|...+...
T Consensus 219 ~~gV~i~~~~~v~~i~~~~~-----~-~~v~~--~~g~~--i-----~~D~viva~G~~pn~~~ 267 (446)
T TIGR01424 219 GRGIRIHPQTSLTSITKTDD-----G-LKVTL--SHGEE--I-----VADVVLFATGRSPNTKG 267 (446)
T ss_pred HCCCEEEeCCEEEEEEEcCC-----e-EEEEE--cCCcE--e-----ecCEEEEeeCCCcCCCc
Confidence 45889999999999976544 2 12333 24542 2 47999999997655543
No 325
>PRK13748 putative mercuric reductase; Provisional
Probab=94.42 E-value=0.27 Score=53.34 Aligned_cols=30 Identities=27% Similarity=0.443 Sum_probs=25.6
Q ss_pred cEEEECCCCchHHHhhhhcC-CCeEEEEecc
Q 009272 48 DYIVIGGGTAGCPLAASLSQ-NASVLLLERG 77 (538)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G 77 (538)
.++|||+|..|+-+|..|++ |.+|.|||+.
T Consensus 272 ~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~ 302 (561)
T PRK13748 272 RLAVIGSSVVALELAQAFARLGSKVTILARS 302 (561)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCEEEEEecC
Confidence 58888999888888888888 8888888874
No 326
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=94.33 E-value=0.038 Score=53.24 Aligned_cols=42 Identities=29% Similarity=0.550 Sum_probs=34.7
Q ss_pred CCCccEEEECCCCchHHHhhhhcC--C-CeEEEEeccCCCCCCCC
Q 009272 44 VSYYDYIVIGGGTAGCPLAASLSQ--N-ASVLLLERGDSPYGNPN 85 (538)
Q Consensus 44 ~~~~DvIIVGsG~aG~~~A~~La~--g-~~VlvlE~G~~~~~~~~ 85 (538)
.++|.|+|||||.+|+..|.++.+ + -+|.|||-..++.-.|.
T Consensus 37 ~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~HyYQPg 81 (446)
T KOG3851|consen 37 RKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAEDHYYQPG 81 (446)
T ss_pred ccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhhcccCcc
Confidence 568999999999999999999988 5 58999998776544343
No 327
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=94.33 E-value=0.48 Score=46.55 Aligned_cols=32 Identities=31% Similarity=0.466 Sum_probs=29.0
Q ss_pred ccEEEECCCCchHHHhhhhcC-CCeEEEEeccC
Q 009272 47 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD 78 (538)
Q Consensus 47 ~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (538)
-.++|||+|..|+-+|..|++ +.+|.++++++
T Consensus 142 ~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~ 174 (300)
T TIGR01292 142 KEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRD 174 (300)
T ss_pred CEEEEECCChHHHHHHHHHHhhcCEEEEEEeCc
Confidence 379999999999999999999 89999998875
No 328
>PTZ00058 glutathione reductase; Provisional
Probab=94.19 E-value=0.28 Score=52.90 Aligned_cols=33 Identities=18% Similarity=0.323 Sum_probs=27.3
Q ss_pred ccEEEECCCCchHHHhhhhcC-CCeEEEEeccCC
Q 009272 47 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 79 (538)
Q Consensus 47 ~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (538)
-.++|||+|..|+-.|..|++ |.+|.|+|+++.
T Consensus 238 k~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~ 271 (561)
T PTZ00058 238 KRIGIAGSGYIAVELINVVNRLGAESYIFARGNR 271 (561)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccc
Confidence 358888888888888888888 888888888763
No 329
>PRK14694 putative mercuric reductase; Provisional
Probab=93.94 E-value=0.37 Score=50.96 Aligned_cols=50 Identities=12% Similarity=0.312 Sum_probs=33.3
Q ss_pred CCCCeEEEeccEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCceEEEcCCCcCCHHHH
Q 009272 222 NPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLL 287 (538)
Q Consensus 222 ~~~~~~i~~~~~V~~I~~~~~~~~~~~~~gV~~~~~~g~~~~~~~~~~~a~~VVLaaGai~tp~lL 287 (538)
++.|+++++++.|++|..+++ . +.+...++ . + .++.||+|+|...+..+|
T Consensus 229 ~~~GI~v~~~~~v~~i~~~~~-----~---~~v~~~~~-~--i-----~~D~vi~a~G~~pn~~~l 278 (468)
T PRK14694 229 RREGIEVLKQTQASEVDYNGR-----E---FILETNAG-T--L-----RAEQLLVATGRTPNTENL 278 (468)
T ss_pred HhCCCEEEeCCEEEEEEEcCC-----E---EEEEECCC-E--E-----EeCEEEEccCCCCCcCCC
Confidence 345889999999999976543 2 22222233 2 3 469999999987776654
No 330
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=93.93 E-value=0.053 Score=56.58 Aligned_cols=35 Identities=34% Similarity=0.368 Sum_probs=32.2
Q ss_pred CccEEEECCCCchHHHhhhhcC-CCeEEEEeccCCC
Q 009272 46 YYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSP 80 (538)
Q Consensus 46 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~ 80 (538)
--.|.|||||++|+.+|..|++ |++|++.|+-+..
T Consensus 123 g~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~ 158 (457)
T COG0493 123 GKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALD 158 (457)
T ss_pred CCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCC
Confidence 3689999999999999999999 9999999998863
No 331
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=93.85 E-value=0.2 Score=51.50 Aligned_cols=32 Identities=34% Similarity=0.666 Sum_probs=30.8
Q ss_pred ccEEEECCCCchHHHhhhhcC-CCeEEEEeccC
Q 009272 47 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD 78 (538)
Q Consensus 47 ~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (538)
||++|||+|.+|+++|+.|++ |++|+|+|++.
T Consensus 1 ~Dv~IIGgG~aGl~~A~~l~~~g~~v~lv~~~~ 33 (419)
T TIGR03378 1 FDVIIIGGGLAGLSCALRLAEAGKKCAIIAAGQ 33 (419)
T ss_pred CCEEEECchHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 799999999999999999999 99999999986
No 332
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=93.80 E-value=0.073 Score=51.61 Aligned_cols=34 Identities=29% Similarity=0.348 Sum_probs=30.5
Q ss_pred ccEEEECCCCchHHHhhhhcC-CCeEEEEeccCCC
Q 009272 47 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSP 80 (538)
Q Consensus 47 ~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~ 80 (538)
--|.|||+|.+|+-+|+.+|+ |.+|.|.|--+..
T Consensus 4 ~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~k 38 (439)
T COG1206 4 QPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPVK 38 (439)
T ss_pred CceEEEcccccccHHHHHHHHcCCcEEEEEccccc
Confidence 348999999999999999999 9999999977654
No 333
>KOG2403 consensus Succinate dehydrogenase, flavoprotein subunit [Energy production and conversion]
Probab=93.59 E-value=0.11 Score=53.87 Aligned_cols=48 Identities=19% Similarity=0.160 Sum_probs=36.4
Q ss_pred ccCCCCcEeccCCceEEe----cccCC-CCCCCchHHHHHHHHHHHHHHHHHh
Q 009272 486 VVDHDYKVLGVDALRVVD----GSTFY-YSPGTNPQATVMMLGRYMGVRILSE 533 (538)
Q Consensus 486 VVD~~~rv~g~~nL~V~D----aSv~P-~~~~~NP~~Ti~ala~r~a~~i~~~ 533 (538)
+.|+.++...+++||.|+ +||.- .-.++|-.|-+..++..+|..|..+
T Consensus 417 ~~~~~g~d~vvpGL~a~GEaac~svHGANRLgaNSLLdlvvfgraca~~ia~~ 469 (642)
T KOG2403|consen 417 TIREVGQDQVVPGLYACGEAACASVHGANRLGANSLLDLVVFGRACALSIAEE 469 (642)
T ss_pred eeccccccccccceeehhHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHh
Confidence 677778889999999876 45554 3456788888888888888877653
No 334
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=93.55 E-value=0.8 Score=46.10 Aligned_cols=38 Identities=34% Similarity=0.318 Sum_probs=34.2
Q ss_pred CCCCccEEEECCCCchHHHhhhhcC--CCeEEEEeccCCC
Q 009272 43 PVSYYDYIVIGGGTAGCPLAASLSQ--NASVLLLERGDSP 80 (538)
Q Consensus 43 ~~~~~DvIIVGsG~aG~~~A~~La~--g~~VlvlE~G~~~ 80 (538)
|.+.+|+|.||-|+.-+.+|.-|.+ +.+++.|||-+..
T Consensus 2 ~~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F 41 (436)
T COG3486 2 MAEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDF 41 (436)
T ss_pred CCcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCC
Confidence 4567999999999999999999999 5899999999853
No 335
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=93.48 E-value=0.19 Score=50.61 Aligned_cols=36 Identities=22% Similarity=0.351 Sum_probs=27.8
Q ss_pred CCCccEEEECCCCchHHHhhhhcC-C--CeEEEEeccCC
Q 009272 44 VSYYDYIVIGGGTAGCPLAASLSQ-N--ASVLLLERGDS 79 (538)
Q Consensus 44 ~~~~DvIIVGsG~aG~~~A~~La~-g--~~VlvlE~G~~ 79 (538)
.....|+|||||-+++-++..|.+ + .+|.++=|++.
T Consensus 188 ~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~ 226 (341)
T PF13434_consen 188 LAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPG 226 (341)
T ss_dssp ---EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS
T ss_pred cCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCc
Confidence 446789999999999999999998 5 48999988874
No 336
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=93.45 E-value=0.077 Score=52.49 Aligned_cols=35 Identities=31% Similarity=0.445 Sum_probs=30.7
Q ss_pred ccEEEECCCCchHHHhhhhcC---CCeEEEEeccCCCC
Q 009272 47 YDYIVIGGGTAGCPLAASLSQ---NASVLLLERGDSPY 81 (538)
Q Consensus 47 ~DvIIVGsG~aG~~~A~~La~---g~~VlvlE~G~~~~ 81 (538)
.-|+|||||+||..+|.+|-+ +.+|-|.|+-+.+.
T Consensus 21 p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPF 58 (468)
T KOG1800|consen 21 PRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPF 58 (468)
T ss_pred ceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCccc
Confidence 479999999999999999766 68999999998653
No 337
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=93.36 E-value=0.089 Score=58.67 Aligned_cols=36 Identities=31% Similarity=0.424 Sum_probs=33.2
Q ss_pred CCccEEEECCCCchHHHhhhhcC-CCeEEEEeccCCC
Q 009272 45 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSP 80 (538)
Q Consensus 45 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~ 80 (538)
.-.-|.|||||++|+++|..|-+ |+.|+|.||.++.
T Consensus 1784 tg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ 1820 (2142)
T KOG0399|consen 1784 TGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRV 1820 (2142)
T ss_pred cCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCc
Confidence 35679999999999999999999 9999999999874
No 338
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=93.35 E-value=0.083 Score=53.86 Aligned_cols=34 Identities=18% Similarity=0.335 Sum_probs=29.3
Q ss_pred cEEEECCCCchHHHhhhhcC----CCeEEEEeccCCCC
Q 009272 48 DYIVIGGGTAGCPLAASLSQ----NASVLLLERGDSPY 81 (538)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~----g~~VlvlE~G~~~~ 81 (538)
.|||||+|++|..+|.+|.+ +.+|+|||+.+...
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~ 38 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTP 38 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCc
Confidence 38999999999999999963 58999999887643
No 339
>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.26 E-value=0.092 Score=52.31 Aligned_cols=40 Identities=38% Similarity=0.459 Sum_probs=36.6
Q ss_pred CCCccEEEECCCCchHHHhhhhcC-CCeEEEEeccCCCCCC
Q 009272 44 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSPYGN 83 (538)
Q Consensus 44 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~~~~ 83 (538)
..+|||||||.|.-=+++|...++ |.+||=|++..+++..
T Consensus 6 P~~fDvVViGTGlpESilAAAcSrsG~sVLHlDsn~yYGg~ 46 (547)
T KOG4405|consen 6 PEEFDVVVIGTGLPESILAAACSRSGSSVLHLDSNEYYGGN 46 (547)
T ss_pred chhccEEEEcCCCcHHHHHHHhhhcCCceEeccCccccCCc
Confidence 468999999999999999999999 9999999999987654
No 340
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=93.19 E-value=0.12 Score=50.92 Aligned_cols=43 Identities=28% Similarity=0.392 Sum_probs=38.0
Q ss_pred CCccEEEECCCCchHHHhhhhcC-CCeEEEEeccCCCCCCCCcc
Q 009272 45 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSPYGNPNIT 87 (538)
Q Consensus 45 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~~~~~~~~ 87 (538)
+.|||||+|.|.-=|+.+..|+- |.+||.|++.+..++.....
T Consensus 5 ~~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~YG~~~asl 48 (434)
T COG5044 5 TLYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYGSTSASL 48 (434)
T ss_pred ccccEEEecccHHHHHHHHHhhhcCceEEEEeCCCccCccccce
Confidence 37999999999999999999998 99999999999887655433
No 341
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=93.12 E-value=0.52 Score=50.01 Aligned_cols=52 Identities=13% Similarity=0.307 Sum_probs=35.0
Q ss_pred CCCCeEEEeccEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCceEEEcCCCcCCHHHH
Q 009272 222 NPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLL 287 (538)
Q Consensus 222 ~~~~~~i~~~~~V~~I~~~~~~~~~~~~~gV~~~~~~g~~~~~~~~~~~a~~VVLaaGai~tp~lL 287 (538)
++.|+++++++.|++|..+++ ....|.+. +++. + .++.||+|+|-.....+|
T Consensus 242 ~~~GI~i~~~~~v~~i~~~~~-----~~~~v~~~--~g~~--i-----~~D~vl~a~G~~Pn~~~l 293 (486)
T TIGR01423 242 RANGINIMTNENPAKVTLNAD-----GSKHVTFE--SGKT--L-----DVDVVMMAIGRVPRTQTL 293 (486)
T ss_pred HHcCCEEEcCCEEEEEEEcCC-----ceEEEEEc--CCCE--E-----EcCEEEEeeCCCcCcccC
Confidence 345889999999999986544 23344443 4432 3 479999999976665543
No 342
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=92.90 E-value=0.46 Score=50.49 Aligned_cols=52 Identities=13% Similarity=0.102 Sum_probs=34.3
Q ss_pred CCCeEEEeccEEEEEEecCCCCCCCeEEEEEEEeCCCC-eEEEEeccCCCceEEEcCCCcCCHHHH
Q 009272 223 PSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDA-EHIAYLRNGPKNEIIVSAGALGSPQLL 287 (538)
Q Consensus 223 ~~~~~i~~~~~V~~I~~~~~~~~~~~~~gV~~~~~~g~-~~~~~~~~~~a~~VVLaaGai~tp~lL 287 (538)
+.|+++++++.+++|...++ . ..|++.+ +. ..++ .++.||+|.|-..++.+|
T Consensus 232 ~~gV~i~~~~~v~~v~~~~~-----~-~~v~~~~--~~~~~~i-----~~D~vl~a~G~~pn~~~l 284 (484)
T TIGR01438 232 EHGVKFKRQFVPIKVEQIEA-----K-VKVTFTD--STNGIEE-----EYDTVLLAIGRDACTRKL 284 (484)
T ss_pred HcCCEEEeCceEEEEEEcCC-----e-EEEEEec--CCcceEE-----EeCEEEEEecCCcCCCcC
Confidence 45889999999988875543 2 2344442 32 1233 479999999987776654
No 343
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=92.85 E-value=0.086 Score=54.05 Aligned_cols=61 Identities=13% Similarity=0.180 Sum_probs=43.7
Q ss_pred HhhcCCCCeEEEeccEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCceEEEcCCCcCCHHHHHHcCCC
Q 009272 218 LEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVG 293 (538)
Q Consensus 218 l~~~~~~~~~i~~~~~V~~I~~~~~~~~~~~~~gV~~~~~~g~~~~~~~~~~~a~~VVLaaGai~tp~lLl~SGig 293 (538)
....++.|+++++++.|++|..+++ . ..|.+ .+|+. + .++.||+|+|...++.++..+|+.
T Consensus 190 ~~~l~~~gV~i~~~~~v~~i~~~~~-----~-~~v~~--~~g~~--i-----~~D~vI~a~G~~p~~~l~~~~gl~ 250 (377)
T PRK04965 190 QHRLTEMGVHLLLKSQLQGLEKTDS-----G-IRATL--DSGRS--I-----EVDAVIAAAGLRPNTALARRAGLA 250 (377)
T ss_pred HHHHHhCCCEEEECCeEEEEEccCC-----E-EEEEE--cCCcE--E-----ECCEEEECcCCCcchHHHHHCCCC
Confidence 3455667999999999999986543 2 23443 35543 3 479999999988777887777764
No 344
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=92.77 E-value=0.045 Score=51.31 Aligned_cols=34 Identities=38% Similarity=0.632 Sum_probs=29.9
Q ss_pred EEEECCCCchHHHhhhhcC---CCeEEEEeccCCCCC
Q 009272 49 YIVIGGGTAGCPLAASLSQ---NASVLLLERGDSPYG 82 (538)
Q Consensus 49 vIIVGsG~aG~~~A~~La~---g~~VlvlE~G~~~~~ 82 (538)
+||||||+||.++|..|+. ..+||+|-+.+...+
T Consensus 2 fivvgggiagvscaeqla~~~psa~illitass~vks 38 (334)
T KOG2755|consen 2 FIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFVKS 38 (334)
T ss_pred eEEEcCccccccHHHHHHhhCCCCcEEEEeccHHHHH
Confidence 7999999999999999998 689999988876543
No 345
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=92.47 E-value=0.11 Score=52.87 Aligned_cols=35 Identities=26% Similarity=0.445 Sum_probs=31.4
Q ss_pred cEEEECCCCchHHHhhhhcC-C--CeEEEEeccCCCCC
Q 009272 48 DYIVIGGGTAGCPLAASLSQ-N--ASVLLLERGDSPYG 82 (538)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g--~~VlvlE~G~~~~~ 82 (538)
-+||||||.+|+.+|.+|.+ . .+|+|||+..+..-
T Consensus 5 ~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~ 42 (405)
T COG1252 5 RIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLF 42 (405)
T ss_pred eEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCcccc
Confidence 49999999999999999999 5 88999999987643
No 346
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=92.36 E-value=0.78 Score=48.36 Aligned_cols=32 Identities=31% Similarity=0.440 Sum_probs=28.2
Q ss_pred ccEEEECCCCchHHHhhhhcC-CC-eEEEEeccC
Q 009272 47 YDYIVIGGGTAGCPLAASLSQ-NA-SVLLLERGD 78 (538)
Q Consensus 47 ~DvIIVGsG~aG~~~A~~La~-g~-~VlvlE~G~ 78 (538)
=.|+|||+|..|+-+|..|++ |. +|.|+++..
T Consensus 274 ~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~ 307 (457)
T PRK11749 274 KRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRG 307 (457)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 369999999999999999998 86 899998764
No 347
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=92.29 E-value=1.4 Score=43.42 Aligned_cols=34 Identities=35% Similarity=0.390 Sum_probs=29.4
Q ss_pred CccEEEECCCCchHHHhhhhcC-CCeEEEEeccCC
Q 009272 46 YYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 79 (538)
Q Consensus 46 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (538)
--||.|||+|.+|.-+|+.||- =.-|.|||=.+.
T Consensus 354 gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~e 388 (520)
T COG3634 354 GKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPE 388 (520)
T ss_pred CceEEEECCCcchHHHHHhHHhhhheeeeeecchh
Confidence 4599999999999999999998 567888886653
No 348
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=91.68 E-value=0.13 Score=47.16 Aligned_cols=35 Identities=23% Similarity=0.264 Sum_probs=30.8
Q ss_pred CCccEEEECCCCchHHHhhhhcC-CCeEEEEeccCC
Q 009272 45 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 79 (538)
Q Consensus 45 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (538)
..-.|+|||||+++-.+|+++++ .+|.+|.|-...
T Consensus 7 h~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~ 42 (322)
T KOG0404|consen 7 HNENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMA 42 (322)
T ss_pred eeeeEEEEccCchHHHHHHHHhhcccCceEEeeeec
Confidence 34569999999999999999999 899999997753
No 349
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=91.07 E-value=0.16 Score=52.48 Aligned_cols=36 Identities=28% Similarity=0.372 Sum_probs=33.2
Q ss_pred CccEEEECCCCchHHHhhhhcC-CCeEEEEeccCCCC
Q 009272 46 YYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSPY 81 (538)
Q Consensus 46 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~~ 81 (538)
.-+++|||+|..|+.+|..|++ |++|.++|+.+...
T Consensus 136 ~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~ 172 (415)
T COG0446 136 PKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLG 172 (415)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccc
Confidence 3689999999999999999999 99999999998753
No 350
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=90.51 E-value=1.9 Score=50.03 Aligned_cols=59 Identities=22% Similarity=0.141 Sum_probs=42.9
Q ss_pred CCCeEEEeccEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCceEEEcCCCcCCHHHHHHcCC
Q 009272 223 PSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGV 292 (538)
Q Consensus 223 ~~~~~i~~~~~V~~I~~~~~~~~~~~~~gV~~~~~~g~~~~~~~~~~~a~~VVLaaGai~tp~lLl~SGi 292 (538)
+.|+++++++.|++|.-+ + ++.+|++...+++..++ .++.|+++.|...+..|+...|.
T Consensus 363 ~~GV~i~~~~~v~~i~g~-~-----~v~~V~l~~~~g~~~~i-----~~D~V~va~G~~Pnt~L~~~lg~ 421 (985)
T TIGR01372 363 ELGIEVLTGHVVAATEGG-K-----RVSGVAVARNGGAGQRL-----EADALAVSGGWTPVVHLFSQRGG 421 (985)
T ss_pred HcCCEEEcCCeEEEEecC-C-----cEEEEEEEecCCceEEE-----ECCEEEEcCCcCchhHHHHhcCC
Confidence 347888899999888643 2 67788776433444444 47999999999888888777654
No 351
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=90.35 E-value=0.19 Score=43.97 Aligned_cols=30 Identities=37% Similarity=0.579 Sum_probs=28.3
Q ss_pred EEEECCCCchHHHhhhhcC-CCeEEEEeccC
Q 009272 49 YIVIGGGTAGCPLAASLSQ-NASVLLLERGD 78 (538)
Q Consensus 49 vIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (538)
+.|||+|..|+..|.+|++ |.+|.++-+.+
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence 5899999999999999999 99999998887
No 352
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=89.97 E-value=0.25 Score=46.62 Aligned_cols=32 Identities=34% Similarity=0.666 Sum_probs=29.9
Q ss_pred cEEEECCCCchHHHhhhhcC-CCeEEEEeccCC
Q 009272 48 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 79 (538)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (538)
.++|||.|-.|..+|..|++ |..|+++|+-+.
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~ 34 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDEE 34 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCCCceEEEEcCHH
Confidence 48999999999999999999 999999998874
No 353
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=89.70 E-value=1.7 Score=44.74 Aligned_cols=55 Identities=15% Similarity=0.197 Sum_probs=43.4
Q ss_pred CCCCeEEEeccEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCceEEEcCCCcCCHHHHHH
Q 009272 222 NPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLML 289 (538)
Q Consensus 222 ~~~~~~i~~~~~V~~I~~~~~~~~~~~~~gV~~~~~~g~~~~~~~~~~~a~~VVLaaGai~tp~lLl~ 289 (538)
+..++++..++.+..+..+.+| +++.|.+. +|+. + .++.||++.|+--...++..
T Consensus 266 e~kgVk~~~~t~~s~l~~~~~G----ev~~V~l~--dg~~--l-----~adlvv~GiG~~p~t~~~~~ 320 (478)
T KOG1336|consen 266 ENKGVKFYLGTVVSSLEGNSDG----EVSEVKLK--DGKT--L-----EADLVVVGIGIKPNTSFLEK 320 (478)
T ss_pred HhcCeEEEEecceeecccCCCC----cEEEEEec--cCCE--e-----ccCeEEEeeccccccccccc
Confidence 4568999999999999988765 88888887 4543 2 58999999998776666654
No 354
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=88.85 E-value=1 Score=46.75 Aligned_cols=58 Identities=16% Similarity=0.106 Sum_probs=41.9
Q ss_pred HHhhcCCCCeEEEeccEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCceEEEcCCCcCCHHH
Q 009272 217 LLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQL 286 (538)
Q Consensus 217 ~l~~~~~~~~~i~~~~~V~~I~~~~~~~~~~~~~gV~~~~~~g~~~~~~~~~~~a~~VVLaaGai~tp~l 286 (538)
+....++.|++++++++|+++..+++ ++..+... +++...+ .++.||||+|.+.+..|
T Consensus 265 L~~~l~~~Gv~I~~g~~V~~v~~~~~-----~V~~v~~~--~g~~~~i-----~AD~VVLAtGrf~s~GL 322 (422)
T PRK05329 265 LRRAFERLGGRIMPGDEVLGAEFEGG-----RVTAVWTR--NHGDIPL-----RARHFVLATGSFFSGGL 322 (422)
T ss_pred HHHHHHhCCCEEEeCCEEEEEEEeCC-----EEEEEEee--CCceEEE-----ECCEEEEeCCCcccCce
Confidence 44455677999999999999998765 67666532 4554444 47999999998755443
No 355
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=88.72 E-value=0.26 Score=44.71 Aligned_cols=30 Identities=37% Similarity=0.506 Sum_probs=26.2
Q ss_pred EEEECCCCchHHHhhhhcC-CCeEEEEeccC
Q 009272 49 YIVIGGGTAGCPLAASLSQ-NASVLLLERGD 78 (538)
Q Consensus 49 vIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (538)
|.|||+|..|...|..++. |.+|.+++..+
T Consensus 2 V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 32 (180)
T PF02737_consen 2 VAVIGAGTMGRGIAALFARAGYEVTLYDRSP 32 (180)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEE-SSH
T ss_pred EEEEcCCHHHHHHHHHHHhCCCcEEEEECCh
Confidence 7899999999999999999 99999999865
No 356
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=88.47 E-value=0.35 Score=50.69 Aligned_cols=33 Identities=24% Similarity=0.436 Sum_probs=30.7
Q ss_pred cEEEECCCCchHHHhhhhcC-CCeEEEEeccCCC
Q 009272 48 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSP 80 (538)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~ 80 (538)
.++|||+|..|+-+|..|++ |.+|.|+|+++..
T Consensus 159 ~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~ 192 (438)
T PRK07251 159 RLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTI 192 (438)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcc
Confidence 69999999999999999999 9999999998753
No 357
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=88.42 E-value=0.27 Score=43.47 Aligned_cols=30 Identities=40% Similarity=0.529 Sum_probs=27.5
Q ss_pred EEEECCCCchHHHhhhhcC-CCeEEEEeccC
Q 009272 49 YIVIGGGTAGCPLAASLSQ-NASVLLLERGD 78 (538)
Q Consensus 49 vIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (538)
|.|||+|..|.++|..|++ |.+|.|..+-+
T Consensus 2 I~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 2 IAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred EEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 7899999999999999999 99999997754
No 358
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=88.35 E-value=0.41 Score=44.06 Aligned_cols=34 Identities=29% Similarity=0.458 Sum_probs=27.7
Q ss_pred CccEEEECCCCchHHHhhhhcC-CCeEEEEeccCC
Q 009272 46 YYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 79 (538)
Q Consensus 46 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (538)
.-.|+|||+|.++.-+|..|++ |.+|.++=|.+.
T Consensus 167 ~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~~ 201 (203)
T PF13738_consen 167 GKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSPI 201 (203)
T ss_dssp TSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS--
T ss_pred CCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCCC
Confidence 3579999999999999999999 999999988864
No 359
>PRK07846 mycothione reductase; Reviewed
Probab=88.03 E-value=0.39 Score=50.51 Aligned_cols=34 Identities=21% Similarity=0.399 Sum_probs=31.2
Q ss_pred ccEEEECCCCchHHHhhhhcC-CCeEEEEeccCCC
Q 009272 47 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSP 80 (538)
Q Consensus 47 ~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~ 80 (538)
-.++|||+|..|+-+|..|++ |.+|.|+|+++..
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~l 201 (451)
T PRK07846 167 ESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRL 201 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcc
Confidence 479999999999999999999 9999999998753
No 360
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=87.18 E-value=0.45 Score=47.21 Aligned_cols=31 Identities=26% Similarity=0.475 Sum_probs=29.2
Q ss_pred cEEEECCCCchHHHhhhhcC-CCeEEEEeccC
Q 009272 48 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGD 78 (538)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (538)
.+.|||+|..|+..|.+|++ |.+|.++.|+.
T Consensus 4 ~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~ 35 (305)
T PRK05708 4 TWHILGAGSLGSLWACRLARAGLPVRLILRDR 35 (305)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCCeEEEEech
Confidence 49999999999999999999 99999999975
No 361
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=86.69 E-value=0.36 Score=49.90 Aligned_cols=29 Identities=31% Similarity=0.276 Sum_probs=25.2
Q ss_pred CchHHHhhhhcC-CCeEEEEeccCCCCCCC
Q 009272 56 TAGCPLAASLSQ-NASVLLLERGDSPYGNP 84 (538)
Q Consensus 56 ~aG~~~A~~La~-g~~VlvlE~G~~~~~~~ 84 (538)
.+|+++|++|++ |.+|+|+|+.+..+...
T Consensus 1 iaGL~aA~~L~~~G~~v~vlEa~~r~GGr~ 30 (450)
T PF01593_consen 1 IAGLAAAYYLAKAGYDVTVLEASDRVGGRI 30 (450)
T ss_dssp HHHHHHHHHHHHTTTEEEEEESSSSSBTTS
T ss_pred ChHHHHHHHHHhCCCCEEEEEcCCCCCcce
Confidence 379999999999 99999999999865433
No 362
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=86.01 E-value=0.57 Score=49.09 Aligned_cols=32 Identities=22% Similarity=0.369 Sum_probs=30.2
Q ss_pred cEEEECCCCchHHHhhhhcC-CCeEEEEeccCC
Q 009272 48 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 79 (538)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (538)
.++|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus 150 ~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~ 182 (438)
T PRK13512 150 KALVVGAGYISLEVLENLYERGLHPTLIHRSDK 182 (438)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecccc
Confidence 69999999999999999999 999999999875
No 363
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=85.99 E-value=0.81 Score=51.94 Aligned_cols=34 Identities=18% Similarity=0.261 Sum_probs=29.5
Q ss_pred cEEEECCCCchHHHhhhhcC-----CCeEEEEeccCCCC
Q 009272 48 DYIVIGGGTAGCPLAASLSQ-----NASVLLLERGDSPY 81 (538)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-----g~~VlvlE~G~~~~ 81 (538)
.+||||+|++|+.+|.+|.+ +.+|+|+++.++..
T Consensus 5 kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~ 43 (847)
T PRK14989 5 RLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIA 43 (847)
T ss_pred cEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCc
Confidence 69999999999999999864 47999999998753
No 364
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=85.35 E-value=0.67 Score=48.79 Aligned_cols=33 Identities=21% Similarity=0.455 Sum_probs=30.6
Q ss_pred ccEEEECCCCchHHHhhhhcC-CCeEEEEeccCC
Q 009272 47 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 79 (538)
Q Consensus 47 ~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (538)
-.++|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus 170 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ 203 (452)
T TIGR03452 170 ESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTK 203 (452)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCc
Confidence 369999999999999999999 999999999875
No 365
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=85.08 E-value=0.68 Score=48.87 Aligned_cols=34 Identities=41% Similarity=0.638 Sum_probs=31.0
Q ss_pred ccEEEECCCCchHHHhhhhcC-CCeEEEEeccCCC
Q 009272 47 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSP 80 (538)
Q Consensus 47 ~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~ 80 (538)
-.++|||+|..|+-+|..|++ |.+|.|+|+++..
T Consensus 170 k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~ 204 (460)
T PRK06292 170 KSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRI 204 (460)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Confidence 369999999999999999999 9999999998753
No 366
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=84.99 E-value=0.6 Score=46.38 Aligned_cols=31 Identities=23% Similarity=0.349 Sum_probs=29.0
Q ss_pred cEEEECCCCchHHHhhhhcC-CCeEEEEeccC
Q 009272 48 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGD 78 (538)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (538)
.|.|||+|..|...|..|++ |.+|.++++.+
T Consensus 4 ~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~ 35 (308)
T PRK06129 4 SVAIIGAGLIGRAWAIVFARAGHEVRLWDADP 35 (308)
T ss_pred EEEEECccHHHHHHHHHHHHCCCeeEEEeCCH
Confidence 48999999999999999999 99999999875
No 367
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=84.95 E-value=1.6 Score=45.93 Aligned_cols=55 Identities=15% Similarity=0.322 Sum_probs=39.3
Q ss_pred HHhhcCCCCeEEEeccEEEEEEecCCCCCCCeEEEEEEEeCCCCeE-EEEeccCCCceEEEcCCC
Q 009272 217 LLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEH-IAYLRNGPKNEIIVSAGA 280 (538)
Q Consensus 217 ~l~~~~~~~~~i~~~~~V~~I~~~~~~~~~~~~~gV~~~~~~g~~~-~~~~~~~~a~~VVLaaGa 280 (538)
+...+++.|.+|++++.|++|..++++ +++||++.+..++.. ++ .++.||+|+..
T Consensus 219 l~~~l~~~g~~i~l~~~V~~I~~~~~~----~v~~v~~~~~~~~~~~~~-----~a~~VI~a~p~ 274 (453)
T TIGR02731 219 IVDYITSRGGEVRLNSRLKEIVLNEDG----SVKHFVLADGEGQRRFEV-----TADAYVSAMPV 274 (453)
T ss_pred HHHHHHhcCCEEeCCCeeEEEEECCCC----CEEEEEEecCCCCceeEE-----ECCEEEEcCCH
Confidence 434444568999999999999876554 788998875333221 23 47999999875
No 368
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=84.48 E-value=0.79 Score=45.63 Aligned_cols=31 Identities=32% Similarity=0.383 Sum_probs=29.0
Q ss_pred cEEEECCCCchHHHhhhhcC-CCeEEEEeccC
Q 009272 48 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGD 78 (538)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (538)
.+.|||+|..|+..|.+|++ |.+|.++.|+.
T Consensus 7 ~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 7 RIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 59999999999999999999 99999998875
No 369
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=84.33 E-value=0.81 Score=50.30 Aligned_cols=33 Identities=15% Similarity=0.187 Sum_probs=30.7
Q ss_pred cEEEECCCCchHHHhhhhcC-CCeEEEEeccCCC
Q 009272 48 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSP 80 (538)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~ 80 (538)
.++|||+|..|+-+|..|++ |.+|.|||+++..
T Consensus 314 ~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~l 347 (659)
T PTZ00153 314 YMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQL 347 (659)
T ss_pred ceEEECCCHHHHHHHHHHHhCCCeEEEEeccCcc
Confidence 69999999999999999999 9999999999864
No 370
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=84.28 E-value=0.85 Score=41.50 Aligned_cols=31 Identities=35% Similarity=0.528 Sum_probs=25.0
Q ss_pred EEEECCCCchHHHhhhhcC-CCeEEEEeccCC
Q 009272 49 YIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 79 (538)
Q Consensus 49 vIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (538)
|.|||.|..|+.+|..||+ |++|+.+|..+.
T Consensus 3 I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~ 34 (185)
T PF03721_consen 3 IAVIGLGYVGLPLAAALAEKGHQVIGVDIDEE 34 (185)
T ss_dssp EEEE--STTHHHHHHHHHHTTSEEEEE-S-HH
T ss_pred EEEECCCcchHHHHHHHHhCCCEEEEEeCChH
Confidence 7899999999999999999 999999987763
No 371
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=84.27 E-value=0.77 Score=48.75 Aligned_cols=31 Identities=32% Similarity=0.516 Sum_probs=28.8
Q ss_pred cEEEECCCCchHHHhhhhcC-CCeEEEEeccC
Q 009272 48 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGD 78 (538)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (538)
.|+|||+|..|+.+|..|++ |.+|.++|+.+
T Consensus 18 ~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~ 49 (480)
T PRK01438 18 RVVVAGLGVSGFAAADALLELGARVTVVDDGD 49 (480)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 59999999999999999999 99999999775
No 372
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=83.91 E-value=5.2 Score=40.13 Aligned_cols=56 Identities=21% Similarity=0.321 Sum_probs=38.7
Q ss_pred CCCeEEEeccEEEEEEecCCCCCCCeEEEEEEEeC-CCCeEEEEeccCCCceEEEcCCCcCCHHHHHHcCCC
Q 009272 223 PSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDA-TDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVG 293 (538)
Q Consensus 223 ~~~~~i~~~~~V~~I~~~~~~~~~~~~~gV~~~~~-~g~~~~~~~~~~~a~~VVLaaGai~tp~lLl~SGig 293 (538)
+.|++++++++|.....+.++ ..-|++.+. +++..++ .++.+.+|.| ..|. ..|+|
T Consensus 264 kQgikF~l~tkv~~a~~~~dg-----~v~i~ve~ak~~k~~tl-----e~DvlLVsiG--RrP~---t~GLg 320 (506)
T KOG1335|consen 264 KQGIKFKLGTKVTSATRNGDG-----PVEIEVENAKTGKKETL-----ECDVLLVSIG--RRPF---TEGLG 320 (506)
T ss_pred hcCceeEeccEEEEeeccCCC-----ceEEEEEecCCCceeEE-----EeeEEEEEcc--Cccc---ccCCC
Confidence 358888999999999988773 445666654 4554444 4799999999 4443 35555
No 373
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=83.65 E-value=0.89 Score=49.24 Aligned_cols=33 Identities=33% Similarity=0.462 Sum_probs=30.5
Q ss_pred ccEEEECCCCchHHHhhhhcC-CCeEEEEeccCC
Q 009272 47 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 79 (538)
Q Consensus 47 ~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (538)
-.++|||+|..|+-+|..|++ |.+|.|+++++.
T Consensus 144 ~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~ 177 (555)
T TIGR03143 144 MDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPD 177 (555)
T ss_pred CEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCc
Confidence 369999999999999999999 999999999875
No 374
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=83.25 E-value=0.87 Score=45.05 Aligned_cols=28 Identities=29% Similarity=0.497 Sum_probs=27.0
Q ss_pred EEEECCCCchHHHhhhhcC-CCeEEEEec
Q 009272 49 YIVIGGGTAGCPLAASLSQ-NASVLLLER 76 (538)
Q Consensus 49 vIIVGsG~aG~~~A~~La~-g~~VlvlE~ 76 (538)
+.|||+|..|+..|..|++ |.+|.++.+
T Consensus 3 I~IiG~G~iG~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 3 IAVVGAGAVGGTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred EEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence 8899999999999999999 999999988
No 375
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=83.08 E-value=0.94 Score=44.74 Aligned_cols=29 Identities=31% Similarity=0.526 Sum_probs=27.4
Q ss_pred EEEECCCCchHHHhhhhcC-CCeEEEEecc
Q 009272 49 YIVIGGGTAGCPLAASLSQ-NASVLLLERG 77 (538)
Q Consensus 49 vIIVGsG~aG~~~A~~La~-g~~VlvlE~G 77 (538)
+.|||+|..|+..|..|++ |.+|.++.+.
T Consensus 3 I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~ 32 (304)
T PRK06522 3 IAILGAGAIGGLFGAALAQAGHDVTLVARR 32 (304)
T ss_pred EEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence 8999999999999999999 9999999884
No 376
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=82.89 E-value=0.96 Score=37.39 Aligned_cols=31 Identities=26% Similarity=0.531 Sum_probs=27.5
Q ss_pred EEEECCCCchHHHhhhhcC-CCeEEEEeccCC
Q 009272 49 YIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 79 (538)
Q Consensus 49 vIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (538)
|||||.|..|..+|..|.+ +.+|+++|+.+.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~ 32 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPE 32 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcH
Confidence 7999999999999999999 779999998863
No 377
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=82.76 E-value=0.82 Score=37.14 Aligned_cols=32 Identities=25% Similarity=0.326 Sum_probs=27.9
Q ss_pred CccEEEECCCCchHHHhhhhcC-CCeEEEEecc
Q 009272 46 YYDYIVIGGGTAGCPLAASLSQ-NASVLLLERG 77 (538)
Q Consensus 46 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G 77 (538)
.-.|+|||+|..|..-+..|.+ |.+|.|+...
T Consensus 7 ~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~ 39 (103)
T PF13241_consen 7 GKRVLVVGGGPVAARKARLLLEAGAKVTVISPE 39 (103)
T ss_dssp T-EEEEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence 4569999999999999999999 9999999655
No 378
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=82.73 E-value=0.93 Score=47.82 Aligned_cols=31 Identities=35% Similarity=0.404 Sum_probs=28.9
Q ss_pred EEEECCCCchHHHhhhhcC-CCeEEEEeccCC
Q 009272 49 YIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 79 (538)
Q Consensus 49 vIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (538)
|.|||.|.+|.++|..|.+ |.+|.+.|+...
T Consensus 3 v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~ 34 (459)
T PRK02705 3 AHVIGLGRSGIAAARLLKAQGWEVVVSDRNDS 34 (459)
T ss_pred EEEEccCHHHHHHHHHHHHCCCEEEEECCCCc
Confidence 8999999999999999999 999999998864
No 379
>PLN02546 glutathione reductase
Probab=81.99 E-value=1.1 Score=48.42 Aligned_cols=33 Identities=18% Similarity=0.338 Sum_probs=30.5
Q ss_pred cEEEECCCCchHHHhhhhcC-CCeEEEEeccCCC
Q 009272 48 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSP 80 (538)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~ 80 (538)
.++|||+|..|+-+|..|++ |.+|.|+|+++..
T Consensus 254 ~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~i 287 (558)
T PLN02546 254 KIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKV 287 (558)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCeEEEEEecccc
Confidence 79999999999999999999 9999999998753
No 380
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=81.89 E-value=1.1 Score=44.55 Aligned_cols=31 Identities=19% Similarity=0.313 Sum_probs=28.6
Q ss_pred cEEEECCCCchHHHhhhhcC-CCeEEEEeccC
Q 009272 48 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGD 78 (538)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (538)
-|.|||+|..|...|..++. |++|.+.+..+
T Consensus 9 ~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~ 40 (321)
T PRK07066 9 TFAAIGSGVIGSGWVARALAHGLDVVAWDPAP 40 (321)
T ss_pred EEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 38899999999999999999 99999999875
No 381
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=81.87 E-value=1.1 Score=43.96 Aligned_cols=31 Identities=23% Similarity=0.338 Sum_probs=28.5
Q ss_pred cEEEECCCCchHHHhhhhcC-CCeEEEEeccC
Q 009272 48 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGD 78 (538)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (538)
-|.|||+|..|...|..|++ |.+|.++++.+
T Consensus 5 kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (287)
T PRK08293 5 NVTVAGAGVLGSQIAFQTAFHGFDVTIYDISD 36 (287)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 48999999999999999999 99999998765
No 382
>PRK04148 hypothetical protein; Provisional
Probab=81.85 E-value=1.2 Score=38.01 Aligned_cols=32 Identities=16% Similarity=0.265 Sum_probs=28.3
Q ss_pred ccEEEECCCCchHHHhhhhcC-CCeEEEEeccCC
Q 009272 47 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 79 (538)
Q Consensus 47 ~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (538)
-.+++||.| .|..+|..|++ |.+|+.+|..+.
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~ 50 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK 50 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence 459999999 88888999999 999999998874
No 383
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=81.80 E-value=11 Score=38.28 Aligned_cols=52 Identities=25% Similarity=0.295 Sum_probs=35.8
Q ss_pred HhhcCCCCeEEEeccEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCceEEEcCCCcCCHHHHH
Q 009272 218 LEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLM 288 (538)
Q Consensus 218 l~~~~~~~~~i~~~~~V~~I~~~~~~~~~~~~~gV~~~~~~g~~~~~~~~~~~a~~VVLaaGai~tp~lLl 288 (538)
|+.+...|+-++.+-.|.+|..++. -|.+. +|.+.. =++.++|+|. +|+-|.
T Consensus 264 Lp~~~nGGvAvl~G~kvvkid~~d~--------~V~Ln--DG~~I~-------YdkcLIATG~--~Pk~l~ 315 (659)
T KOG1346|consen 264 LPKAVNGGVAVLRGRKVVKIDEEDK--------KVILN--DGTTIG-------YDKCLIATGV--RPKKLQ 315 (659)
T ss_pred CcccccCceEEEeccceEEeecccC--------eEEec--CCcEee-------hhheeeecCc--Ccccch
Confidence 4456678999999999999988766 24444 665433 2778888884 555443
No 384
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=81.71 E-value=1.2 Score=41.26 Aligned_cols=30 Identities=20% Similarity=0.436 Sum_probs=27.3
Q ss_pred ccEEEECCCCchHHHhhhhcC-CCeEEEEec
Q 009272 47 YDYIVIGGGTAGCPLAASLSQ-NASVLLLER 76 (538)
Q Consensus 47 ~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~ 76 (538)
--++|||+|-.|...|..|.+ |.+|.|+++
T Consensus 11 k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~ 41 (202)
T PRK06718 11 KRVVIVGGGKVAGRRAITLLKYGAHIVVISP 41 (202)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEcC
Confidence 469999999999999999998 999999974
No 385
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=81.63 E-value=1.1 Score=43.96 Aligned_cols=32 Identities=25% Similarity=0.437 Sum_probs=29.5
Q ss_pred cEEEECCCCchHHHhhhhcC-CCeEEEEeccCC
Q 009272 48 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 79 (538)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (538)
-|.|||+|..|...|..++. |++|.++|+.+.
T Consensus 7 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~ 39 (286)
T PRK07819 7 RVGVVGAGQMGAGIAEVCARAGVDVLVFETTEE 39 (286)
T ss_pred EEEEEcccHHHHHHHHHHHhCCCEEEEEECCHH
Confidence 48899999999999999999 999999998864
No 386
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=81.53 E-value=0.99 Score=44.32 Aligned_cols=31 Identities=19% Similarity=0.347 Sum_probs=28.7
Q ss_pred EEEECCCCchHHHhhhhcC-CCeEEEEeccCC
Q 009272 49 YIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 79 (538)
Q Consensus 49 vIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (538)
|.|||+|..|...|..|++ |.+|.++++.+.
T Consensus 4 V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~ 35 (288)
T PRK09260 4 LVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQE 35 (288)
T ss_pred EEEECccHHHHHHHHHHHhCCCcEEEEeCCHH
Confidence 8999999999999999999 999999988753
No 387
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=81.40 E-value=1.3 Score=39.14 Aligned_cols=29 Identities=28% Similarity=0.404 Sum_probs=26.3
Q ss_pred ccEEEECCCCchHHHhhhhcC-CCeEEEEe
Q 009272 47 YDYIVIGGGTAGCPLAASLSQ-NASVLLLE 75 (538)
Q Consensus 47 ~DvIIVGsG~aG~~~A~~La~-g~~VlvlE 75 (538)
--++|||+|..|..-|..|.+ |.+|.||.
T Consensus 14 ~~vlVvGGG~va~rka~~Ll~~ga~V~VIs 43 (157)
T PRK06719 14 KVVVIIGGGKIAYRKASGLKDTGAFVTVVS 43 (157)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence 349999999999999999988 99999993
No 388
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=80.48 E-value=1.3 Score=46.59 Aligned_cols=32 Identities=31% Similarity=0.543 Sum_probs=29.3
Q ss_pred ccEEEECCCCchHHHhhhhcC-CCeEEEEeccC
Q 009272 47 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD 78 (538)
Q Consensus 47 ~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (538)
-.|+|||+|..|..+|..|++ |.+|.++|+..
T Consensus 6 k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 6 KKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 458999999999999999999 99999998864
No 389
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=80.10 E-value=1.4 Score=37.74 Aligned_cols=33 Identities=21% Similarity=0.430 Sum_probs=29.1
Q ss_pred ccEEEECCCCchHHHhhhhcC-CC-eEEEEeccCC
Q 009272 47 YDYIVIGGGTAGCPLAASLSQ-NA-SVLLLERGDS 79 (538)
Q Consensus 47 ~DvIIVGsG~aG~~~A~~La~-g~-~VlvlE~G~~ 79 (538)
.-|+|||.|.-|+.+|..|+. |. ++.|++....
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v 37 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIV 37 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB
T ss_pred CEEEEECcCHHHHHHHHHHHHhCCCceeecCCcce
Confidence 458999999999999999999 85 8999988864
No 390
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=79.34 E-value=3.6 Score=43.60 Aligned_cols=65 Identities=17% Similarity=0.353 Sum_probs=42.8
Q ss_pred HHhhcCCCCeEEEeccEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCceEEEcCCCcCCHHHH
Q 009272 217 LLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLL 287 (538)
Q Consensus 217 ~l~~~~~~~~~i~~~~~V~~I~~~~~~~~~~~~~gV~~~~~~g~~~~~~~~~~~a~~VVLaaGai~tp~lL 287 (538)
+....++.|.+|+.+++|++|..++++++..++++|.+.+.++. ..+ .++.||+|+......+||
T Consensus 225 l~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~-~~~-----~aD~VVlA~p~~~~~~Ll 289 (474)
T TIGR02732 225 ILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGK-KVI-----KADAYVAACDVPGIKRLL 289 (474)
T ss_pred HHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcc-eEE-----ECCEEEECCChHHHHhhC
Confidence 34444557999999999999998652100113788887532221 223 479999999987766654
No 391
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=79.14 E-value=1.7 Score=41.93 Aligned_cols=33 Identities=24% Similarity=0.240 Sum_probs=25.4
Q ss_pred CccEEEECCCCchHHHhhhhcC-C-------CeEEEEeccC
Q 009272 46 YYDYIVIGGGTAGCPLAASLSQ-N-------ASVLLLERGD 78 (538)
Q Consensus 46 ~~DvIIVGsG~aG~~~A~~La~-g-------~~VlvlE~G~ 78 (538)
..++.|||+|..|+++|..+.+ . .+|.|++--.
T Consensus 3 ~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf 43 (342)
T KOG3923|consen 3 TPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRF 43 (342)
T ss_pred CccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCC
Confidence 4679999999999999966655 2 5777775443
No 392
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=78.98 E-value=1.5 Score=44.42 Aligned_cols=32 Identities=25% Similarity=0.279 Sum_probs=28.3
Q ss_pred cEEEECCCCchHHHhhhhcC-CCe-EEEEeccCC
Q 009272 48 DYIVIGGGTAGCPLAASLSQ-NAS-VLLLERGDS 79 (538)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g~~-VlvlE~G~~ 79 (538)
.++|||+|..|+-+|..|++ |.+ |.|+++...
T Consensus 174 ~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~~ 207 (352)
T PRK12770 174 KVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRTI 207 (352)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCeEEEEeecch
Confidence 59999999999999999988 875 999998753
No 393
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=78.92 E-value=1.7 Score=43.82 Aligned_cols=31 Identities=29% Similarity=0.418 Sum_probs=28.6
Q ss_pred EEEECCCCchHHHhhhhcC-CCeEEEEeccCC
Q 009272 49 YIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 79 (538)
Q Consensus 49 vIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (538)
+.|||+|..|++.|.-||+ |+.|+.+|.-+.
T Consensus 3 I~viGtGYVGLv~g~~lA~~GHeVv~vDid~~ 34 (414)
T COG1004 3 ITVIGTGYVGLVTGACLAELGHEVVCVDIDES 34 (414)
T ss_pred eEEECCchHHHHHHHHHHHcCCeEEEEeCCHH
Confidence 7899999999999999999 999999987753
No 394
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=78.90 E-value=1.6 Score=45.83 Aligned_cols=32 Identities=31% Similarity=0.395 Sum_probs=29.7
Q ss_pred cEEEECCCCchHHHhhhhcC-CCeEEEEeccCC
Q 009272 48 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 79 (538)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (538)
.|+|||+|..|+-+|..|++ |.+|.|+++...
T Consensus 274 ~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~ 306 (449)
T TIGR01316 274 SVVVIGGGNTAVDSARTALRLGAEVHCLYRRTR 306 (449)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCEEEEEeecCc
Confidence 69999999999999999999 999999998864
No 395
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=78.76 E-value=1.6 Score=40.41 Aligned_cols=29 Identities=24% Similarity=0.398 Sum_probs=26.9
Q ss_pred cEEEECCCCchHHHhhhhcC-CCeEEEEec
Q 009272 48 DYIVIGGGTAGCPLAASLSQ-NASVLLLER 76 (538)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g~~VlvlE~ 76 (538)
-|+|||+|..|..-|..|.+ |.+|.|+..
T Consensus 11 ~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp 40 (205)
T TIGR01470 11 AVLVVGGGDVALRKARLLLKAGAQLRVIAE 40 (205)
T ss_pred eEEEECcCHHHHHHHHHHHHCCCEEEEEcC
Confidence 59999999999999999999 999999964
No 396
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=78.75 E-value=1.8 Score=41.84 Aligned_cols=34 Identities=24% Similarity=0.333 Sum_probs=30.4
Q ss_pred CccEEEECCCCchHHHhhhhcC-C-CeEEEEeccCC
Q 009272 46 YYDYIVIGGGTAGCPLAASLSQ-N-ASVLLLERGDS 79 (538)
Q Consensus 46 ~~DvIIVGsG~aG~~~A~~La~-g-~~VlvlE~G~~ 79 (538)
...|+|||.|..|+.+|..|++ | .++.|+|.-..
T Consensus 30 ~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V 65 (268)
T PRK15116 30 DAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDV 65 (268)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEe
Confidence 5679999999999999999999 8 68999987654
No 397
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=78.74 E-value=1.8 Score=43.98 Aligned_cols=32 Identities=31% Similarity=0.545 Sum_probs=29.2
Q ss_pred cEEEECCCCchHHHhhhhcC-C-CeEEEEeccCC
Q 009272 48 DYIVIGGGTAGCPLAASLSQ-N-ASVLLLERGDS 79 (538)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g-~~VlvlE~G~~ 79 (538)
+++|||+|..|.++|..||+ + .+|++.+|...
T Consensus 3 ~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~ 36 (389)
T COG1748 3 KILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKE 36 (389)
T ss_pred cEEEECCchhHHHHHHHHHhCCCceEEEEeCCHH
Confidence 58999999999999999999 6 89999999853
No 398
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=78.58 E-value=1.5 Score=37.55 Aligned_cols=33 Identities=30% Similarity=0.426 Sum_probs=28.4
Q ss_pred CccEEEECCCCchHHHhhhhcC-CC-eEEEEeccC
Q 009272 46 YYDYIVIGGGTAGCPLAASLSQ-NA-SVLLLERGD 78 (538)
Q Consensus 46 ~~DvIIVGsG~aG~~~A~~La~-g~-~VlvlE~G~ 78 (538)
.--++|||+|-+|-.++..|++ |. +|.|+-|..
T Consensus 12 ~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~ 46 (135)
T PF01488_consen 12 GKRVLVIGAGGAARAVAAALAALGAKEITIVNRTP 46 (135)
T ss_dssp TSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSH
T ss_pred CCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence 4569999999999999999999 86 599997754
No 399
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=78.40 E-value=1.6 Score=43.88 Aligned_cols=31 Identities=35% Similarity=0.640 Sum_probs=28.4
Q ss_pred cEEEECCCCchHHHhhhhcC-CCeEEEEeccC
Q 009272 48 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGD 78 (538)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (538)
.+.|||+|..|...|.+|++ |++|.++++.+
T Consensus 4 kI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~ 35 (341)
T PRK08229 4 RICVLGAGSIGCYLGGRLAAAGADVTLIGRAR 35 (341)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCcEEEEecHH
Confidence 38999999999999999999 99999999853
No 400
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=78.19 E-value=1.9 Score=39.74 Aligned_cols=34 Identities=18% Similarity=0.249 Sum_probs=29.9
Q ss_pred CccEEEECCCCchHHHhhhhcC-CC-eEEEEeccCC
Q 009272 46 YYDYIVIGGGTAGCPLAASLSQ-NA-SVLLLERGDS 79 (538)
Q Consensus 46 ~~DvIIVGsG~aG~~~A~~La~-g~-~VlvlE~G~~ 79 (538)
...|+|||.|..|+.+|..|++ |. ++.|++....
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~v 56 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARAGIGKLILVDFDVV 56 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEE
Confidence 4679999999999999999999 96 7999987743
No 401
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=78.11 E-value=1.7 Score=42.72 Aligned_cols=30 Identities=20% Similarity=0.386 Sum_probs=28.2
Q ss_pred EEEECCCCchHHHhhhhcC-CCeEEEEeccC
Q 009272 49 YIVIGGGTAGCPLAASLSQ-NASVLLLERGD 78 (538)
Q Consensus 49 vIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (538)
|.|||+|..|...|..|++ |.+|.++|+.+
T Consensus 6 I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (291)
T PRK06035 6 IGVVGSGVMGQGIAQVFARTGYDVTIVDVSE 36 (291)
T ss_pred EEEECccHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 8999999999999999999 99999998875
No 402
>PTZ00052 thioredoxin reductase; Provisional
Probab=77.89 E-value=1.6 Score=46.53 Aligned_cols=30 Identities=20% Similarity=0.300 Sum_probs=28.2
Q ss_pred cEEEECCCCchHHHhhhhcC-CCeEEEEecc
Q 009272 48 DYIVIGGGTAGCPLAASLSQ-NASVLLLERG 77 (538)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G 77 (538)
.++|||+|..|+-+|..|++ |.+|.|+++.
T Consensus 184 ~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~ 214 (499)
T PTZ00052 184 KTLIVGASYIGLETAGFLNELGFDVTVAVRS 214 (499)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCcEEEEEcC
Confidence 69999999999999999999 9999999874
No 403
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=77.04 E-value=2.2 Score=41.90 Aligned_cols=31 Identities=29% Similarity=0.300 Sum_probs=28.6
Q ss_pred cEEEECCCCchHHHhhhhcC-CCeEEEEeccC
Q 009272 48 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGD 78 (538)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (538)
.|.|||+|..|...|..|++ |.+|.++++.+
T Consensus 6 kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~ 37 (292)
T PRK07530 6 KVGVIGAGQMGNGIAHVCALAGYDVLLNDVSA 37 (292)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 48999999999999999999 99999998765
No 404
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=77.03 E-value=1.9 Score=44.02 Aligned_cols=33 Identities=30% Similarity=0.368 Sum_probs=29.7
Q ss_pred CccEEEECCCCchHHHhhhhcC-CCeEEEEeccC
Q 009272 46 YYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD 78 (538)
Q Consensus 46 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (538)
..+++|||+|..|..+|..|.. |.+|.++++.+
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~ 200 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGLGATVTILDINI 200 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence 4569999999999999999999 99999998764
No 405
>PLN02487 zeta-carotene desaturase
Probab=76.92 E-value=4.4 Score=43.84 Aligned_cols=63 Identities=14% Similarity=0.259 Sum_probs=42.7
Q ss_pred HhhcCCCCeEEEeccEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCceEEEcCCCcCCHHH
Q 009272 218 LEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQL 286 (538)
Q Consensus 218 l~~~~~~~~~i~~~~~V~~I~~~~~~~~~~~~~gV~~~~~~g~~~~~~~~~~~a~~VVLaaGai~tp~l 286 (538)
....++.|.+|++++.|++|..+.++++..+++||.+.. +++...+ .++.||+|++.....+|
T Consensus 302 ~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~-~~~~~~~-----~aD~VV~A~p~~~~~~L 364 (569)
T PLN02487 302 AKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSK-ATEKEIV-----KADAYVAACDVPGIKRL 364 (569)
T ss_pred HHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEec-CCCceEE-----ECCEEEECCCHHHHHHh
Confidence 344567899999999999999985421112588998852 2332233 47999999997655444
No 406
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=76.84 E-value=2 Score=39.64 Aligned_cols=31 Identities=26% Similarity=0.382 Sum_probs=28.0
Q ss_pred cEEEECCCCchHHHhhhhcC-CCeEEEEeccC
Q 009272 48 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGD 78 (538)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (538)
-++|+|.|-.|..+|.+|.+ |.+|++.++..
T Consensus 30 ~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~ 61 (200)
T cd01075 30 TVAVQGLGKVGYKLAEHLLEEGAKLIVADINE 61 (200)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 49999999999999999999 99999987653
No 407
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=76.55 E-value=2 Score=43.08 Aligned_cols=30 Identities=33% Similarity=0.503 Sum_probs=27.6
Q ss_pred EEEECCCCchHHHhhhhcC-CCeEEEEeccC
Q 009272 49 YIVIGGGTAGCPLAASLSQ-NASVLLLERGD 78 (538)
Q Consensus 49 vIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (538)
+.|||+|..|...|..|++ |.+|.++.+..
T Consensus 3 I~IiGaGa~G~ala~~L~~~g~~V~l~~r~~ 33 (326)
T PRK14620 3 ISILGAGSFGTAIAIALSSKKISVNLWGRNH 33 (326)
T ss_pred EEEECcCHHHHHHHHHHHHCCCeEEEEecCH
Confidence 7899999999999999999 99999998743
No 408
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=76.53 E-value=2.9 Score=37.33 Aligned_cols=33 Identities=33% Similarity=0.410 Sum_probs=28.6
Q ss_pred CCccEEEECCCC-chHHHhhhhcC-CCeEEEEecc
Q 009272 45 SYYDYIVIGGGT-AGCPLAASLSQ-NASVLLLERG 77 (538)
Q Consensus 45 ~~~DvIIVGsG~-aG~~~A~~La~-g~~VlvlE~G 77 (538)
....++|||+|- +|..+|..|.+ |.+|.++.|-
T Consensus 43 ~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~ 77 (168)
T cd01080 43 AGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK 77 (168)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence 357799999996 69999999998 8899999875
No 409
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=76.31 E-value=3.3 Score=40.27 Aligned_cols=36 Identities=28% Similarity=0.322 Sum_probs=32.3
Q ss_pred CCCccEEEECCCCchHHHhhhhcC-CCeEEEEeccCC
Q 009272 44 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 79 (538)
Q Consensus 44 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (538)
...-+|+|||+|..|.-+|.-+.. |.+|.++|....
T Consensus 166 V~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~ 202 (371)
T COG0686 166 VLPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNID 202 (371)
T ss_pred CCCccEEEECCccccchHHHHHhccCCeeEEEecCHH
Confidence 456789999999999999999998 999999999864
No 410
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=76.13 E-value=2.2 Score=36.88 Aligned_cols=31 Identities=19% Similarity=0.416 Sum_probs=28.0
Q ss_pred EEEECCCCchHHHhhhhcC-CC-eEEEEeccCC
Q 009272 49 YIVIGGGTAGCPLAASLSQ-NA-SVLLLERGDS 79 (538)
Q Consensus 49 vIIVGsG~aG~~~A~~La~-g~-~VlvlE~G~~ 79 (538)
|+|||.|..|+.+|..|+. |. ++.+++....
T Consensus 2 VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v 34 (143)
T cd01483 2 VLLVGLGGLGSEIALNLARSGVGKITLIDFDTV 34 (143)
T ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCc
Confidence 7999999999999999999 85 8999987764
No 411
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=76.04 E-value=2.5 Score=42.32 Aligned_cols=31 Identities=29% Similarity=0.367 Sum_probs=28.5
Q ss_pred cEEEECCCCchHHHhhhhcC-CCeEEEEeccC
Q 009272 48 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGD 78 (538)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (538)
-+.|||+|..|...|.+|++ |.+|.++.+.+
T Consensus 6 ~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~ 37 (328)
T PRK14618 6 RVAVLGAGAWGTALAVLAASKGVPVRLWARRP 37 (328)
T ss_pred eEEEECcCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 48999999999999999999 99999998854
No 412
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=75.69 E-value=2.5 Score=44.49 Aligned_cols=31 Identities=19% Similarity=0.368 Sum_probs=29.2
Q ss_pred cEEEECCCCchHHHhhhhcC-CCeEEEEeccC
Q 009272 48 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGD 78 (538)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (538)
.|+|||+|..|+=+|..|++ +.+|.++.++.
T Consensus 206 ~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~ 237 (461)
T PLN02172 206 VVVVIGNFASGADISRDIAKVAKEVHIASRAS 237 (461)
T ss_pred EEEEECCCcCHHHHHHHHHHhCCeEEEEEeec
Confidence 69999999999999999999 89999999875
No 413
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=75.66 E-value=2.7 Score=38.78 Aligned_cols=36 Identities=17% Similarity=0.374 Sum_probs=31.7
Q ss_pred CCCccEEEECCCCchHHHhhhhcC-CCeEEEEeccCC
Q 009272 44 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 79 (538)
Q Consensus 44 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (538)
.+.-.|-|||+|..|+-+|.-.+. |+.|.|+++...
T Consensus 9 ~~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~ 45 (298)
T KOG2304|consen 9 AEIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANED 45 (298)
T ss_pred ccccceEEEcccccchhHHHHHHhcCCceEEecCCHH
Confidence 344569999999999999999999 999999998864
No 414
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=75.47 E-value=2.1 Score=42.36 Aligned_cols=31 Identities=32% Similarity=0.561 Sum_probs=28.2
Q ss_pred EEEECCCCchHHHhhhhcC-CCeEEEEeccCC
Q 009272 49 YIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 79 (538)
Q Consensus 49 vIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (538)
+.|+|+|..|+..|++|++ |..|+++=|.+.
T Consensus 3 I~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~ 34 (307)
T COG1893 3 ILILGAGAIGSLLGARLAKAGHDVTLLVRSRR 34 (307)
T ss_pred EEEECCcHHHHHHHHHHHhCCCeEEEEecHHH
Confidence 7899999999999999999 988999977763
No 415
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=75.14 E-value=2.5 Score=37.99 Aligned_cols=31 Identities=19% Similarity=0.284 Sum_probs=27.9
Q ss_pred EEEECCCCchHHHhhhhcC-CC-eEEEEeccCC
Q 009272 49 YIVIGGGTAGCPLAASLSQ-NA-SVLLLERGDS 79 (538)
Q Consensus 49 vIIVGsG~aG~~~A~~La~-g~-~VlvlE~G~~ 79 (538)
|+|||.|..|+.+|..|++ |. ++.+++....
T Consensus 2 VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v 34 (174)
T cd01487 2 VGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVV 34 (174)
T ss_pred EEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEE
Confidence 7999999999999999999 86 6999988753
No 416
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=74.53 E-value=2.6 Score=42.42 Aligned_cols=34 Identities=18% Similarity=0.340 Sum_probs=30.1
Q ss_pred CccEEEECCCCchHHHhhhhcC-CC-eEEEEeccCC
Q 009272 46 YYDYIVIGGGTAGCPLAASLSQ-NA-SVLLLERGDS 79 (538)
Q Consensus 46 ~~DvIIVGsG~aG~~~A~~La~-g~-~VlvlE~G~~ 79 (538)
..-|+|||.|..|+.+|..|++ |. ++.|+|....
T Consensus 24 ~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~v 59 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYV 59 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcc
Confidence 4569999999999999999999 85 8999988764
No 417
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=74.47 E-value=2.8 Score=41.23 Aligned_cols=30 Identities=30% Similarity=0.422 Sum_probs=28.2
Q ss_pred EEEECCCCchHHHhhhhcC-CCeEEEEeccC
Q 009272 49 YIVIGGGTAGCPLAASLSQ-NASVLLLERGD 78 (538)
Q Consensus 49 vIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (538)
|-|||+|..|.-.|..+|. |++|.+.|..+
T Consensus 6 v~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~ 36 (307)
T COG1250 6 VAVIGAGVMGAGIAAVFALAGYDVVLKDISP 36 (307)
T ss_pred EEEEcccchhHHHHHHHhhcCCceEEEeCCH
Confidence 7899999999999999999 89999999884
No 418
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=74.45 E-value=2.3 Score=41.61 Aligned_cols=31 Identities=29% Similarity=0.403 Sum_probs=28.4
Q ss_pred cEEEECCCCchHHHhhhhcC-CCeEEEEeccC
Q 009272 48 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGD 78 (538)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (538)
.+.|||+|..|...|..|++ |.+|+++|..+
T Consensus 5 kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~ 36 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVAGYDVVMVDISD 36 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHCCCceEEEeCCH
Confidence 48999999999999999999 99999998765
No 419
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=73.79 E-value=2.8 Score=42.13 Aligned_cols=34 Identities=24% Similarity=0.368 Sum_probs=30.3
Q ss_pred CccEEEECCCCchHHHhhhhcC-CC-eEEEEeccCC
Q 009272 46 YYDYIVIGGGTAGCPLAASLSQ-NA-SVLLLERGDS 79 (538)
Q Consensus 46 ~~DvIIVGsG~aG~~~A~~La~-g~-~VlvlE~G~~ 79 (538)
...|+|||.|.-|+.+|..|+. |. ++.+++....
T Consensus 24 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~V 59 (339)
T PRK07688 24 EKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYV 59 (339)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCcc
Confidence 4679999999999999999999 86 8999998653
No 420
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=73.76 E-value=2.5 Score=37.69 Aligned_cols=33 Identities=21% Similarity=0.230 Sum_probs=28.3
Q ss_pred CccEEEECCCCchHHHhhhhcC-CCeEEEEeccC
Q 009272 46 YYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD 78 (538)
Q Consensus 46 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (538)
..-|+|+|+|..|..+|.-|.. |.+|.++|..+
T Consensus 20 p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~ 53 (168)
T PF01262_consen 20 PAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP 53 (168)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred CeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCH
Confidence 4679999999999999999999 99999998765
No 421
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=73.41 E-value=2.8 Score=43.23 Aligned_cols=33 Identities=30% Similarity=0.246 Sum_probs=29.5
Q ss_pred ccEEEECCCCchHHHhhhhcC-CCeEEEEeccCC
Q 009272 47 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 79 (538)
Q Consensus 47 ~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (538)
-.|+|+|.|..|..+|..|.. |.+|+++|.-+.
T Consensus 203 ktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~ 236 (413)
T cd00401 203 KVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPI 236 (413)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECChh
Confidence 369999999999999999988 999999988754
No 422
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=73.31 E-value=3.2 Score=41.23 Aligned_cols=31 Identities=29% Similarity=0.544 Sum_probs=28.2
Q ss_pred cEEEECCCCchHHHhhhhcC-CCeEEEEeccC
Q 009272 48 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGD 78 (538)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (538)
.|.|||+|..|...|..|++ |.+|.++++..
T Consensus 6 ~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~ 37 (311)
T PRK06130 6 NLAIIGAGTMGSGIAALFARKGLQVVLIDVME 37 (311)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 48999999999999999999 99999998754
No 423
>COG4716 Myosin-crossreactive antigen [Function unknown]
Probab=73.29 E-value=3.1 Score=41.45 Aligned_cols=38 Identities=24% Similarity=0.239 Sum_probs=31.0
Q ss_pred CCCccEEEECCCCchHHHhhhhcC-----CCeEEEEeccCCCC
Q 009272 44 VSYYDYIVIGGGTAGCPLAASLSQ-----NASVLLLERGDSPY 81 (538)
Q Consensus 44 ~~~~DvIIVGsG~aG~~~A~~La~-----g~~VlvlE~G~~~~ 81 (538)
.++-.+-|||+|.||+++|-.|-+ |.++-++|.=+...
T Consensus 20 VdqKsaY~vG~GlAsLA~AvfLIRDg~m~G~~IHilEelpl~G 62 (587)
T COG4716 20 VDQKSAYIVGGGLASLAAAVFLIRDGQMDGKRIHILEELPLAG 62 (587)
T ss_pred cccceeEEEccchHhhhheeEEEeccccCCceeEeeecCcccC
Confidence 444568899999999999999976 57999999877543
No 424
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=73.02 E-value=2.9 Score=41.37 Aligned_cols=29 Identities=31% Similarity=0.441 Sum_probs=26.5
Q ss_pred EEEECCCCchHHHhhhhcC-CC-eEEEEecc
Q 009272 49 YIVIGGGTAGCPLAASLSQ-NA-SVLLLERG 77 (538)
Q Consensus 49 vIIVGsG~aG~~~A~~La~-g~-~VlvlE~G 77 (538)
+.|||+|..|+.+|..|+. |. +|+++|.-
T Consensus 4 V~VIGaG~vG~~iA~~la~~g~~~VvlvDi~ 34 (305)
T TIGR01763 4 ISVIGAGFVGATTAFRLAEKELADLVLLDVV 34 (305)
T ss_pred EEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 8899999999999999998 75 89999983
No 425
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=72.87 E-value=3 Score=39.68 Aligned_cols=34 Identities=21% Similarity=0.393 Sum_probs=30.1
Q ss_pred CccEEEECCCCchHHHhhhhcC-C-CeEEEEeccCC
Q 009272 46 YYDYIVIGGGTAGCPLAASLSQ-N-ASVLLLERGDS 79 (538)
Q Consensus 46 ~~DvIIVGsG~aG~~~A~~La~-g-~~VlvlE~G~~ 79 (538)
...|+|||.|..|+.+|..|+. | .++.+++....
T Consensus 24 ~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~v 59 (240)
T TIGR02355 24 ASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTV 59 (240)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcc
Confidence 4679999999999999999999 8 58999887764
No 426
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=72.57 E-value=2.7 Score=41.94 Aligned_cols=31 Identities=32% Similarity=0.474 Sum_probs=28.6
Q ss_pred cEEEECCCCchHHHhhhhcC-CCeEEEEeccC
Q 009272 48 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGD 78 (538)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (538)
.|.|||+|..|...|..|++ |.+|.++++.+
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~ 34 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGHDVTLWARDP 34 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 48999999999999999999 99999998865
No 427
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=72.07 E-value=3 Score=43.45 Aligned_cols=33 Identities=36% Similarity=0.733 Sum_probs=28.6
Q ss_pred cEEEECCCCchHHHhhhhcC---------------CCeEEEEeccCCC
Q 009272 48 DYIVIGGGTAGCPLAASLSQ---------------NASVLLLERGDSP 80 (538)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~---------------g~~VlvlE~G~~~ 80 (538)
.++|||+|+.|+-+|..|++ +.+|.|+|+++..
T Consensus 175 ~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l 222 (424)
T PTZ00318 175 HFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEV 222 (424)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCcc
Confidence 79999999999999998873 5789999999753
No 428
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=72.01 E-value=2.9 Score=44.51 Aligned_cols=32 Identities=28% Similarity=0.408 Sum_probs=29.3
Q ss_pred cEEEECCCCchHHHhhhhcC-CCeEEEEeccCC
Q 009272 48 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 79 (538)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (538)
-|-|||+|..|...|..|++ |++|.|.|+.+.
T Consensus 7 kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e 39 (503)
T TIGR02279 7 TVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAE 39 (503)
T ss_pred EEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 38999999999999999999 999999998763
No 429
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=71.98 E-value=3.8 Score=42.92 Aligned_cols=34 Identities=32% Similarity=0.479 Sum_probs=31.2
Q ss_pred ccEEEECCCCchHHHhhhhcC-CCeEEEEeccCCC
Q 009272 47 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSP 80 (538)
Q Consensus 47 ~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~ 80 (538)
-+|+|||+|.+|.-+|-.|++ |.+|.|+=|.+..
T Consensus 176 KrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~~~ 210 (443)
T COG2072 176 KRVLVIGAGASAVDIAPELAEVGASVTLSQRSPPH 210 (443)
T ss_pred CeEEEECCCccHHHHHHHHHhcCCeeEEEecCCCc
Confidence 379999999999999999999 9999999998854
No 430
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=71.67 E-value=3.3 Score=39.60 Aligned_cols=35 Identities=20% Similarity=0.368 Sum_probs=30.3
Q ss_pred CCccEEEECCCCchHHHhhhhcC-C-CeEEEEeccCC
Q 009272 45 SYYDYIVIGGGTAGCPLAASLSQ-N-ASVLLLERGDS 79 (538)
Q Consensus 45 ~~~DvIIVGsG~aG~~~A~~La~-g-~~VlvlE~G~~ 79 (538)
.+..|+|||.|.-|+.+|..|+. | .++.|++....
T Consensus 31 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~v 67 (245)
T PRK05690 31 KAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTV 67 (245)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEE
Confidence 35789999999999999999999 8 48999887754
No 431
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=71.55 E-value=3.6 Score=39.14 Aligned_cols=35 Identities=17% Similarity=0.382 Sum_probs=28.5
Q ss_pred CCCccEEEECCCCchHHHhhhhcC-CC-----------eEEEEeccC
Q 009272 44 VSYYDYIVIGGGTAGCPLAASLSQ-NA-----------SVLLLERGD 78 (538)
Q Consensus 44 ~~~~DvIIVGsG~aG~~~A~~La~-g~-----------~VlvlE~G~ 78 (538)
.+...|+|||.|..|+.++..|++ |. ++.|++...
T Consensus 9 ~~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~ 55 (244)
T TIGR03736 9 SRPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDT 55 (244)
T ss_pred hCCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCE
Confidence 456789999999999999999997 62 677776554
No 432
>PRK08328 hypothetical protein; Provisional
Probab=71.42 E-value=3.4 Score=39.10 Aligned_cols=34 Identities=26% Similarity=0.440 Sum_probs=28.9
Q ss_pred CccEEEECCCCchHHHhhhhcC-C-CeEEEEeccCC
Q 009272 46 YYDYIVIGGGTAGCPLAASLSQ-N-ASVLLLERGDS 79 (538)
Q Consensus 46 ~~DvIIVGsG~aG~~~A~~La~-g-~~VlvlE~G~~ 79 (538)
..-|+|||.|..|+.+|..|+. | .++.+++....
T Consensus 27 ~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~v 62 (231)
T PRK08328 27 KAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTP 62 (231)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcc
Confidence 4569999999999999999999 8 47888866543
No 433
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=71.11 E-value=2.9 Score=39.36 Aligned_cols=32 Identities=22% Similarity=0.445 Sum_probs=28.4
Q ss_pred cEEEECCCCchHHHhhhhcC-CC---eEEEEeccCC
Q 009272 48 DYIVIGGGTAGCPLAASLSQ-NA---SVLLLERGDS 79 (538)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g~---~VlvlE~G~~ 79 (538)
-++|+|+|.+|..+|..|.+ |. +|.|++|-+.
T Consensus 27 rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl 62 (226)
T cd05311 27 KIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGV 62 (226)
T ss_pred EEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCc
Confidence 59999999999999999998 85 5999999753
No 434
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=71.03 E-value=3.8 Score=40.09 Aligned_cols=33 Identities=27% Similarity=0.672 Sum_probs=29.3
Q ss_pred EEEECCCCchHHHhhhhcC-C-CeEEEEeccCCCC
Q 009272 49 YIVIGGGTAGCPLAASLSQ-N-ASVLLLERGDSPY 81 (538)
Q Consensus 49 vIIVGsG~aG~~~A~~La~-g-~~VlvlE~G~~~~ 81 (538)
|+|||+|.-|+.+|..|+. | .++.+++.+....
T Consensus 2 VLIvGaGGLGs~vA~~La~aGVg~ItlvD~D~Ve~ 36 (307)
T cd01486 2 CLLLGAGTLGCNVARNLLGWGVRHITFVDSGKVSY 36 (307)
T ss_pred EEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecc
Confidence 7999999999999999999 8 5899999887543
No 435
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=71.01 E-value=3.6 Score=38.30 Aligned_cols=34 Identities=18% Similarity=0.254 Sum_probs=29.9
Q ss_pred CccEEEECCCCchHHHhhhhcC-CC-eEEEEeccCC
Q 009272 46 YYDYIVIGGGTAGCPLAASLSQ-NA-SVLLLERGDS 79 (538)
Q Consensus 46 ~~DvIIVGsG~aG~~~A~~La~-g~-~VlvlE~G~~ 79 (538)
...|+|||.|..|+.+|..|+. |. ++.+++....
T Consensus 28 ~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~v 63 (212)
T PRK08644 28 KAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVV 63 (212)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEe
Confidence 5679999999999999999999 85 7999988753
No 436
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=70.98 E-value=3.8 Score=42.54 Aligned_cols=31 Identities=35% Similarity=0.422 Sum_probs=28.5
Q ss_pred EEEECCCCchHHHhhhhcC-CCeEEEEeccCC
Q 009272 49 YIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 79 (538)
Q Consensus 49 vIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (538)
|.|||.|..|+..|..|++ |++|.++++.+.
T Consensus 3 I~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~ 34 (411)
T TIGR03026 3 IAVIGLGYVGLPLAALLADLGHEVTGVDIDQE 34 (411)
T ss_pred EEEECCCchhHHHHHHHHhcCCeEEEEECCHH
Confidence 7899999999999999999 999999988653
No 437
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=70.95 E-value=3.2 Score=39.12 Aligned_cols=34 Identities=24% Similarity=0.360 Sum_probs=29.5
Q ss_pred CccEEEECCCCchHHHhhhhcC-CC-eEEEEeccCC
Q 009272 46 YYDYIVIGGGTAGCPLAASLSQ-NA-SVLLLERGDS 79 (538)
Q Consensus 46 ~~DvIIVGsG~aG~~~A~~La~-g~-~VlvlE~G~~ 79 (538)
+.-|+|||.|..|+.+|..|+. |. ++.|++....
T Consensus 21 ~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~v 56 (228)
T cd00757 21 NARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVV 56 (228)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEE
Confidence 4679999999999999999999 84 8888877653
No 438
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=70.48 E-value=3.8 Score=37.81 Aligned_cols=34 Identities=21% Similarity=0.464 Sum_probs=30.1
Q ss_pred CccEEEECCCCchHHHhhhhcC-CC-eEEEEeccCC
Q 009272 46 YYDYIVIGGGTAGCPLAASLSQ-NA-SVLLLERGDS 79 (538)
Q Consensus 46 ~~DvIIVGsG~aG~~~A~~La~-g~-~VlvlE~G~~ 79 (538)
+.-|+|||.|..|+.+|..|+. |. ++.+++....
T Consensus 21 ~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~v 56 (202)
T TIGR02356 21 NSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHV 56 (202)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEE
Confidence 5679999999999999999999 85 8999988754
No 439
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=70.46 E-value=3.5 Score=40.39 Aligned_cols=32 Identities=19% Similarity=0.364 Sum_probs=28.4
Q ss_pred ccEEEECCCCchHHHhhhhcC-CC-eEEEEeccC
Q 009272 47 YDYIVIGGGTAGCPLAASLSQ-NA-SVLLLERGD 78 (538)
Q Consensus 47 ~DvIIVGsG~aG~~~A~~La~-g~-~VlvlE~G~ 78 (538)
-.++|||+|.+|.++|..|++ |. +|.|+.|..
T Consensus 128 k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~ 161 (284)
T PRK12549 128 ERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDP 161 (284)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCH
Confidence 469999999999999999998 85 799998864
No 440
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=70.38 E-value=3.6 Score=44.47 Aligned_cols=36 Identities=25% Similarity=0.600 Sum_probs=31.7
Q ss_pred CccEEEECCCCchHHHhhhhcC-C-CeEEEEeccCCCC
Q 009272 46 YYDYIVIGGGTAGCPLAASLSQ-N-ASVLLLERGDSPY 81 (538)
Q Consensus 46 ~~DvIIVGsG~aG~~~A~~La~-g-~~VlvlE~G~~~~ 81 (538)
..-|+|||+|.-|+.+|..|+. | .++.+++.+....
T Consensus 338 ~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~D~Ve~ 375 (664)
T TIGR01381 338 QLKVLLLGAGTLGCNVARCLIGWGVRHITFVDNGKVSY 375 (664)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEECC
Confidence 5679999999999999999999 8 5899999887644
No 441
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=70.28 E-value=3.5 Score=46.01 Aligned_cols=32 Identities=19% Similarity=0.329 Sum_probs=29.3
Q ss_pred cEEEECCCCchHHHhhhhcC-CCeEEEEeccCC
Q 009272 48 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 79 (538)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (538)
-|.|||+|..|.-+|..++. |++|.|+|..+.
T Consensus 315 ~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~ 347 (715)
T PRK11730 315 QAAVLGAGIMGGGIAYQSASKGVPVIMKDINQK 347 (715)
T ss_pred eEEEECCchhHHHHHHHHHhCCCeEEEEeCCHH
Confidence 48999999999999999999 999999997753
No 442
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=70.25 E-value=4.2 Score=40.34 Aligned_cols=31 Identities=26% Similarity=0.363 Sum_probs=28.4
Q ss_pred cEEEECCCCchHHHhhhhcC-CCeEEEEeccC
Q 009272 48 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGD 78 (538)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (538)
.+.|||+|..|...|.+|++ |++|.+..+..
T Consensus 6 ~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~ 37 (308)
T PRK14619 6 TIAILGAGAWGSTLAGLASANGHRVRVWSRRS 37 (308)
T ss_pred EEEEECccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 48999999999999999999 99999998764
No 443
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=70.03 E-value=3.9 Score=38.32 Aligned_cols=30 Identities=27% Similarity=0.400 Sum_probs=27.0
Q ss_pred EEEEC-CCCchHHHhhhhcC-CCeEEEEeccC
Q 009272 49 YIVIG-GGTAGCPLAASLSQ-NASVLLLERGD 78 (538)
Q Consensus 49 vIIVG-sG~aG~~~A~~La~-g~~VlvlE~G~ 78 (538)
+.||| +|..|..+|..|++ |.+|.+..+.+
T Consensus 3 I~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~ 34 (219)
T TIGR01915 3 IAVLGGTGDQGKGLALRLAKAGNKIIIGSRDL 34 (219)
T ss_pred EEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCH
Confidence 78997 79999999999999 99999987764
No 444
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=69.97 E-value=3.9 Score=35.06 Aligned_cols=31 Identities=16% Similarity=0.273 Sum_probs=26.1
Q ss_pred EEEECCCCchHHHhhhhcC-CCeEEEEeccCC
Q 009272 49 YIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 79 (538)
Q Consensus 49 vIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (538)
++|+|+|..+..+|.-++. |++|.|+|--+.
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e 32 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRPE 32 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-CC
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCcc
Confidence 5899999999999999988 999999987754
No 445
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=69.58 E-value=3.7 Score=38.84 Aligned_cols=31 Identities=19% Similarity=0.528 Sum_probs=27.5
Q ss_pred EEEECCCCchHHHhhhhcC-C-CeEEEEeccCC
Q 009272 49 YIVIGGGTAGCPLAASLSQ-N-ASVLLLERGDS 79 (538)
Q Consensus 49 vIIVGsG~aG~~~A~~La~-g-~~VlvlE~G~~ 79 (538)
|+|||+|.-|+.++..|+. | .++.|++....
T Consensus 2 VlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~V 34 (234)
T cd01484 2 VLLVGAGGIGCELLKNLALMGFGQIHVIDMDTI 34 (234)
T ss_pred EEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEE
Confidence 7999999999999999999 8 48999887753
No 446
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=69.41 E-value=4.6 Score=39.75 Aligned_cols=30 Identities=27% Similarity=0.384 Sum_probs=28.2
Q ss_pred EEEECCCCchHHHhhhhcC-CCeEEEEeccC
Q 009272 49 YIVIGGGTAGCPLAASLSQ-NASVLLLERGD 78 (538)
Q Consensus 49 vIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (538)
|.|||+|..|...|..|+. |.+|.++++.+
T Consensus 7 V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~ 37 (295)
T PLN02545 7 VGVVGAGQMGSGIAQLAAAAGMDVWLLDSDP 37 (295)
T ss_pred EEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 8999999999999999999 99999998775
No 447
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=69.28 E-value=3.9 Score=42.49 Aligned_cols=32 Identities=28% Similarity=0.388 Sum_probs=29.0
Q ss_pred cEEEECCCCchHHHhhhhcC-CCeEEEEeccCC
Q 009272 48 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 79 (538)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (538)
-+.|||.|..|+..|..|++ |.+|.++++.+.
T Consensus 5 kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~ 37 (415)
T PRK11064 5 TISVIGLGYIGLPTAAAFASRQKQVIGVDINQH 37 (415)
T ss_pred EEEEECcchhhHHHHHHHHhCCCEEEEEeCCHH
Confidence 38999999999999999999 999999997653
No 448
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=69.05 E-value=3.7 Score=40.20 Aligned_cols=32 Identities=28% Similarity=0.451 Sum_probs=29.3
Q ss_pred ccEEEECCCCchHHHhhhhcC-CCeEEEEeccC
Q 009272 47 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD 78 (538)
Q Consensus 47 ~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (538)
-.++|||.|..|..+|..|.. |.+|.+.+|.+
T Consensus 152 k~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~ 184 (287)
T TIGR02853 152 SNVMVLGFGRTGMTIARTFSALGARVFVGARSS 184 (287)
T ss_pred CEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 459999999999999999999 99999998865
No 449
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=68.72 E-value=4 Score=45.57 Aligned_cols=32 Identities=16% Similarity=0.317 Sum_probs=29.4
Q ss_pred cEEEECCCCchHHHhhhhcC-CCeEEEEeccCC
Q 009272 48 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 79 (538)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (538)
-|.|||+|..|..+|..++. |+.|.++|..+.
T Consensus 315 ~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~ 347 (714)
T TIGR02437 315 QAAVLGAGIMGGGIAYQSASKGTPIVMKDINQH 347 (714)
T ss_pred eEEEECCchHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 49999999999999999999 999999998763
No 450
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=68.68 E-value=4.3 Score=37.34 Aligned_cols=34 Identities=21% Similarity=0.369 Sum_probs=29.7
Q ss_pred CccEEEECCCCchHHHhhhhcC-CC-eEEEEeccCC
Q 009272 46 YYDYIVIGGGTAGCPLAASLSQ-NA-SVLLLERGDS 79 (538)
Q Consensus 46 ~~DvIIVGsG~aG~~~A~~La~-g~-~VlvlE~G~~ 79 (538)
+.-|+|||.|.-|+.+|..|+. |. ++.+++....
T Consensus 19 ~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~v 54 (198)
T cd01485 19 SAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRLV 54 (198)
T ss_pred hCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCcC
Confidence 4679999999999999999999 84 7999987753
No 451
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=68.61 E-value=4.3 Score=41.70 Aligned_cols=33 Identities=24% Similarity=0.217 Sum_probs=29.8
Q ss_pred ccEEEECCCCchHHHhhhhcC-CCeEEEEeccCC
Q 009272 47 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 79 (538)
Q Consensus 47 ~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (538)
--|+|||.|..|..+|..|.. |.+|+++|..+.
T Consensus 196 k~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~ 229 (406)
T TIGR00936 196 KTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPI 229 (406)
T ss_pred CEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChh
Confidence 369999999999999999999 999999998763
No 452
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=68.50 E-value=3.9 Score=40.19 Aligned_cols=32 Identities=22% Similarity=0.345 Sum_probs=27.4
Q ss_pred ccEEEECCCCchHHHhhhhcC-CCe-EEEEeccC
Q 009272 47 YDYIVIGGGTAGCPLAASLSQ-NAS-VLLLERGD 78 (538)
Q Consensus 47 ~DvIIVGsG~aG~~~A~~La~-g~~-VlvlE~G~ 78 (538)
--++|+|+|-+|.++|..|++ |.+ |.|+.|..
T Consensus 127 k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~ 160 (289)
T PRK12548 127 KKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD 160 (289)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 358999999999999999998 875 99998764
No 453
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=68.18 E-value=4.6 Score=40.09 Aligned_cols=31 Identities=19% Similarity=0.400 Sum_probs=27.7
Q ss_pred cEEEECCCCchHHHhhhhcC-C--CeEEEEeccC
Q 009272 48 DYIVIGGGTAGCPLAASLSQ-N--ASVLLLERGD 78 (538)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g--~~VlvlE~G~ 78 (538)
.+.|||+|..|+.+|..|+. | ..|.++++..
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~ 35 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINK 35 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCc
Confidence 38999999999999999998 7 4799999865
No 454
>PRK07233 hypothetical protein; Provisional
Probab=67.97 E-value=7 Score=40.60 Aligned_cols=65 Identities=17% Similarity=0.144 Sum_probs=42.6
Q ss_pred CCCccccHHHHHhhcCCCCeEEEeccEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCceEEEcCCCcCCHHH
Q 009272 207 QNSQRHTAADLLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQL 286 (538)
Q Consensus 207 ~~g~r~~~~~~l~~~~~~~~~i~~~~~V~~I~~~~~~~~~~~~~gV~~~~~~g~~~~~~~~~~~a~~VVLaaGai~tp~l 286 (538)
.+|.......+...+++.|.+|+++++|++|..+++ +++++.. +++. + .++.||+|+..-....+
T Consensus 194 ~gG~~~l~~~l~~~l~~~g~~v~~~~~V~~i~~~~~-----~~~~~~~---~~~~--~-----~ad~vI~a~p~~~~~~l 258 (434)
T PRK07233 194 EGGFATLIDALAEAIEARGGEIRLGTPVTSVVIDGG-----GVTGVEV---DGEE--E-----DFDAVISTAPPPILARL 258 (434)
T ss_pred CCCHHHHHHHHHHHHHhcCceEEeCCCeeEEEEcCC-----ceEEEEe---CCce--E-----ECCEEEECCCHHHHHhh
Confidence 455433333355555667889999999999998766 5655542 3432 2 47999999987544443
No 455
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=67.73 E-value=4.6 Score=37.11 Aligned_cols=34 Identities=21% Similarity=0.252 Sum_probs=29.6
Q ss_pred CccEEEECCCCchHHHhhhhcC-CC-eEEEEeccCC
Q 009272 46 YYDYIVIGGGTAGCPLAASLSQ-NA-SVLLLERGDS 79 (538)
Q Consensus 46 ~~DvIIVGsG~aG~~~A~~La~-g~-~VlvlE~G~~ 79 (538)
..-|+|||.|.-|+.+|..|+. |. ++.+++-...
T Consensus 21 ~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~v 56 (197)
T cd01492 21 SARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTV 56 (197)
T ss_pred hCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCcc
Confidence 4669999999999999999999 85 7999987753
No 456
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=67.63 E-value=4.2 Score=43.37 Aligned_cols=31 Identities=32% Similarity=0.484 Sum_probs=28.9
Q ss_pred EEEECCCCchHHHhhhhcC-CCeEEEEeccCC
Q 009272 49 YIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 79 (538)
Q Consensus 49 vIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (538)
|-|||+|..|...|..|+. |+.|.|.|+.+.
T Consensus 10 V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e 41 (507)
T PRK08268 10 VAVIGAGAMGAGIAQVAAQAGHTVLLYDARAG 41 (507)
T ss_pred EEEECCCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 8899999999999999999 999999998764
No 457
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=67.54 E-value=3.9 Score=42.89 Aligned_cols=30 Identities=23% Similarity=0.298 Sum_probs=27.9
Q ss_pred EEEECCCCchHHHhhhhcC-CCeEEEEeccC
Q 009272 49 YIVIGGGTAGCPLAASLSQ-NASVLLLERGD 78 (538)
Q Consensus 49 vIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (538)
++|+|+|..|.++|..|++ |.+|++.|+..
T Consensus 8 v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~ 38 (447)
T PRK02472 8 VLVLGLAKSGYAAAKLLHKLGANVTVNDGKP 38 (447)
T ss_pred EEEEeeCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 8999999999999999999 99999998765
No 458
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=66.32 E-value=5.1 Score=38.81 Aligned_cols=31 Identities=19% Similarity=0.349 Sum_probs=26.6
Q ss_pred cEEEECCCCchHHHhhhhcC-C-CeEEEEeccC
Q 009272 48 DYIVIGGGTAGCPLAASLSQ-N-ASVLLLERGD 78 (538)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g-~~VlvlE~G~ 78 (538)
=|||||+|-.|+.++.-|.+ | .|+.+++=-.
T Consensus 76 yVVVVG~GgVGSwv~nmL~RSG~qKi~iVDfdq 108 (430)
T KOG2018|consen 76 YVVVVGAGGVGSWVANMLLRSGVQKIRIVDFDQ 108 (430)
T ss_pred EEEEEecCchhHHHHHHHHHhcCceEEEechhh
Confidence 38999999999999999999 8 5898886444
No 459
>PRK08223 hypothetical protein; Validated
Probab=66.06 E-value=5.2 Score=38.95 Aligned_cols=34 Identities=12% Similarity=0.058 Sum_probs=29.9
Q ss_pred CccEEEECCCCchHHHhhhhcC-C-CeEEEEeccCC
Q 009272 46 YYDYIVIGGGTAGCPLAASLSQ-N-ASVLLLERGDS 79 (538)
Q Consensus 46 ~~DvIIVGsG~aG~~~A~~La~-g-~~VlvlE~G~~ 79 (538)
+.-|+|||.|.-|+.+|..|+. | .++.+++-...
T Consensus 27 ~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~V 62 (287)
T PRK08223 27 NSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVF 62 (287)
T ss_pred cCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCc
Confidence 5779999999999999999999 8 48899887764
No 460
>PLN02612 phytoene desaturase
Probab=65.98 E-value=9.7 Score=41.37 Aligned_cols=47 Identities=13% Similarity=0.208 Sum_probs=35.3
Q ss_pred cCCCCeEEEeccEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCceEEEcCCC
Q 009272 221 ANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGA 280 (538)
Q Consensus 221 ~~~~~~~i~~~~~V~~I~~~~~~~~~~~~~gV~~~~~~g~~~~~~~~~~~a~~VVLaaGa 280 (538)
.++.|.+|+++++|++|..++++ ++.+|.+. +|+. + .++.||+|+..
T Consensus 318 l~~~G~~I~l~~~V~~I~~~~~g----~v~~v~~~--~G~~--~-----~ad~VI~a~p~ 364 (567)
T PLN02612 318 FQSLGGEVRLNSRIKKIELNDDG----TVKHFLLT--NGSV--V-----EGDVYVSATPV 364 (567)
T ss_pred HHhcCCEEEeCCeeeEEEECCCC----cEEEEEEC--CCcE--E-----ECCEEEECCCH
Confidence 34568999999999999987664 67777774 5643 2 37999998754
No 461
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=65.97 E-value=4.8 Score=39.38 Aligned_cols=31 Identities=26% Similarity=0.550 Sum_probs=27.4
Q ss_pred EEEECCCCchHHHhhhhcC-C-CeEEEEeccCC
Q 009272 49 YIVIGGGTAGCPLAASLSQ-N-ASVLLLERGDS 79 (538)
Q Consensus 49 vIIVGsG~aG~~~A~~La~-g-~~VlvlE~G~~ 79 (538)
|+|||+|.-|+.++..|+. | .++.|++-...
T Consensus 2 VlVVGaGGlG~eilknLal~Gvg~I~IvD~D~V 34 (291)
T cd01488 2 ILVIGAGGLGCELLKNLALSGFRNIHVIDMDTI 34 (291)
T ss_pred EEEECCCHHHHHHHHHHHHcCCCeEEEECCCEe
Confidence 7999999999999999999 8 48999877653
No 462
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=65.88 E-value=4.7 Score=42.93 Aligned_cols=31 Identities=26% Similarity=0.340 Sum_probs=28.5
Q ss_pred cEEEECCCCchHHHhhhhcC-CCeEEEEeccC
Q 009272 48 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGD 78 (538)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (538)
.|-|||+|..|...|..|++ |.+|.|.++.+
T Consensus 6 kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~ 37 (495)
T PRK07531 6 KAACIGGGVIGGGWAARFLLAGIDVAVFDPHP 37 (495)
T ss_pred EEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 38899999999999999999 99999998865
No 463
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=65.79 E-value=4.5 Score=40.00 Aligned_cols=31 Identities=23% Similarity=0.528 Sum_probs=27.9
Q ss_pred EEEECCCCchHHHhhhhcC-C-CeEEEEeccCC
Q 009272 49 YIVIGGGTAGCPLAASLSQ-N-ASVLLLERGDS 79 (538)
Q Consensus 49 vIIVGsG~aG~~~A~~La~-g-~~VlvlE~G~~ 79 (538)
|+|||+|.-|+.+|..|+. | .++.|++....
T Consensus 2 VlIVGaGGlG~EiaKnLal~Gvg~ItIvD~D~V 34 (312)
T cd01489 2 VLVVGAGGIGCELLKNLVLTGFGEIHIIDLDTI 34 (312)
T ss_pred EEEECCCHHHHHHHHHHHHhcCCeEEEEcCCCc
Confidence 7999999999999999999 8 48999987764
No 464
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=65.73 E-value=5.1 Score=41.46 Aligned_cols=33 Identities=27% Similarity=0.233 Sum_probs=29.8
Q ss_pred ccEEEECCCCchHHHhhhhcC-CCeEEEEeccCC
Q 009272 47 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 79 (538)
Q Consensus 47 ~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (538)
--|+|||.|..|..+|..|.. |.+|+++|..+.
T Consensus 213 k~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ 246 (425)
T PRK05476 213 KVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPI 246 (425)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCch
Confidence 359999999999999999999 999999998764
No 465
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=65.09 E-value=5 Score=42.14 Aligned_cols=32 Identities=31% Similarity=0.612 Sum_probs=29.0
Q ss_pred cEEEECCCCchHHHhhhhcC-CCeEEEEeccCC
Q 009272 48 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 79 (538)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (538)
.|+|||+|..|..+|..|.+ |.+|.++|+.+.
T Consensus 2 ~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~ 34 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSGENNDVTVIDTDEE 34 (453)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEECCHH
Confidence 48999999999999999998 999999998653
No 466
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=65.06 E-value=7.4 Score=38.84 Aligned_cols=35 Identities=23% Similarity=0.289 Sum_probs=29.7
Q ss_pred CCccEEEECCCCchHHHhhhhcC-CC-eEEEEeccCC
Q 009272 45 SYYDYIVIGGGTAGCPLAASLSQ-NA-SVLLLERGDS 79 (538)
Q Consensus 45 ~~~DvIIVGsG~aG~~~A~~La~-g~-~VlvlE~G~~ 79 (538)
+..-+.|||+|..|..+|+.|+. |. +|.|+|.-+.
T Consensus 5 ~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~ 41 (321)
T PTZ00082 5 KRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKN 41 (321)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCc
Confidence 33469999999999999999988 85 8999998664
No 467
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=65.01 E-value=4.8 Score=39.25 Aligned_cols=30 Identities=23% Similarity=0.324 Sum_probs=27.5
Q ss_pred EEEECCCCchHHHhhhhcC-CCeEEEEeccC
Q 009272 49 YIVIGGGTAGCPLAASLSQ-NASVLLLERGD 78 (538)
Q Consensus 49 vIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (538)
|.|||.|..|.+.|..|++ |.+|.++++.+
T Consensus 3 I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~ 33 (279)
T PRK07417 3 IGIVGLGLIGGSLGLDLRSLGHTVYGVSRRE 33 (279)
T ss_pred EEEEeecHHHHHHHHHHHHCCCEEEEEECCH
Confidence 7899999999999999998 99999998754
No 468
>PRK06153 hypothetical protein; Provisional
Probab=64.67 E-value=6.2 Score=40.02 Aligned_cols=34 Identities=18% Similarity=0.244 Sum_probs=30.0
Q ss_pred CccEEEECCCCchHHHhhhhcC-C-CeEEEEeccCC
Q 009272 46 YYDYIVIGGGTAGCPLAASLSQ-N-ASVLLLERGDS 79 (538)
Q Consensus 46 ~~DvIIVGsG~aG~~~A~~La~-g-~~VlvlE~G~~ 79 (538)
..-|.|||.|..|+.+|..|++ | .++.|++....
T Consensus 176 ~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D~V 211 (393)
T PRK06153 176 GQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGDDF 211 (393)
T ss_pred hCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCCEe
Confidence 4679999999999999999999 8 58999987754
No 469
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=64.65 E-value=5.7 Score=39.37 Aligned_cols=31 Identities=26% Similarity=0.561 Sum_probs=27.5
Q ss_pred EEEECCCCchHHHhhhhcC-C--CeEEEEeccCC
Q 009272 49 YIVIGGGTAGCPLAASLSQ-N--ASVLLLERGDS 79 (538)
Q Consensus 49 vIIVGsG~aG~~~A~~La~-g--~~VlvlE~G~~ 79 (538)
|.|||+|..|.++|+.|+. | ..|.|+++...
T Consensus 3 I~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~ 36 (306)
T cd05291 3 VVIIGAGHVGSSFAYSLVNQGIADELVLIDINEE 36 (306)
T ss_pred EEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcc
Confidence 7999999999999999998 7 47999998653
No 470
>PLN02494 adenosylhomocysteinase
Probab=64.38 E-value=5.8 Score=41.37 Aligned_cols=33 Identities=24% Similarity=0.250 Sum_probs=29.9
Q ss_pred ccEEEECCCCchHHHhhhhcC-CCeEEEEeccCC
Q 009272 47 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 79 (538)
Q Consensus 47 ~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (538)
-.++|||.|..|..+|.+|.. |.+|+++|+.+.
T Consensus 255 KtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~ 288 (477)
T PLN02494 255 KVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPI 288 (477)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch
Confidence 469999999999999999988 999999998764
No 471
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=64.20 E-value=5.2 Score=44.81 Aligned_cols=32 Identities=19% Similarity=0.302 Sum_probs=29.3
Q ss_pred cEEEECCCCchHHHhhhhcC-CCeEEEEeccCC
Q 009272 48 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 79 (538)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (538)
-|.|||+|..|.-+|..++. |++|.++|..+.
T Consensus 337 ~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~ 369 (737)
T TIGR02441 337 TLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPA 369 (737)
T ss_pred EEEEECCCHhHHHHHHHHHhCCCcEEEecCCHH
Confidence 48999999999999999999 999999997763
No 472
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=63.65 E-value=5.4 Score=42.81 Aligned_cols=30 Identities=37% Similarity=0.554 Sum_probs=27.3
Q ss_pred cEEEECCCCchHHHhhhhcC-CCeEEEEecc
Q 009272 48 DYIVIGGGTAGCPLAASLSQ-NASVLLLERG 77 (538)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G 77 (538)
-++|+|+|.+|.++|+.|++ |.+|.++.|.
T Consensus 381 ~vlIlGaGGagrAia~~L~~~G~~V~i~nR~ 411 (529)
T PLN02520 381 LFVVIGAGGAGKALAYGAKEKGARVVIANRT 411 (529)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCEEEEEcCC
Confidence 58999999999999999999 9999999764
No 473
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=63.60 E-value=4.5 Score=35.68 Aligned_cols=32 Identities=31% Similarity=0.347 Sum_probs=25.8
Q ss_pred cEEEECCCCchHHHhhhhcC-CCeEEEEeccCC
Q 009272 48 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 79 (538)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (538)
-++|+|=|..|..+|.+|.. |.+|.|.|.-|.
T Consensus 25 ~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi 57 (162)
T PF00670_consen 25 RVVVIGYGKVGKGIARALRGLGARVTVTEIDPI 57 (162)
T ss_dssp EEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHH
T ss_pred EEEEeCCCcccHHHHHHHhhCCCEEEEEECChH
Confidence 49999999999999999998 999999999773
No 474
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=63.25 E-value=5.6 Score=43.13 Aligned_cols=34 Identities=18% Similarity=0.364 Sum_probs=30.8
Q ss_pred CccEEEECCCCchHHHhhhhcC-CCeEEEEeccCC
Q 009272 46 YYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 79 (538)
Q Consensus 46 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (538)
+-.+||+|.|.-|-.+|.+|.+ |.+|+++|+.+.
T Consensus 417 ~~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~ 451 (558)
T PRK10669 417 CNHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRT 451 (558)
T ss_pred CCCEEEECCChHHHHHHHHHHHCCCCEEEEECCHH
Confidence 4679999999999999999998 999999998753
No 475
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=63.14 E-value=6.3 Score=37.20 Aligned_cols=34 Identities=21% Similarity=0.231 Sum_probs=29.5
Q ss_pred CccEEEECCCCchHHHhhhhcC-CC-eEEEEeccCC
Q 009272 46 YYDYIVIGGGTAGCPLAASLSQ-NA-SVLLLERGDS 79 (538)
Q Consensus 46 ~~DvIIVGsG~aG~~~A~~La~-g~-~VlvlE~G~~ 79 (538)
+.-|+|||.|..|+.+|..|++ |. ++.|++....
T Consensus 11 ~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V 46 (231)
T cd00755 11 NAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVV 46 (231)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEE
Confidence 4569999999999999999999 84 8999887654
No 476
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=62.88 E-value=5.2 Score=31.62 Aligned_cols=31 Identities=29% Similarity=0.492 Sum_probs=26.9
Q ss_pred EEEECCCCchHHHhhhhcC-C---CeEEEE-eccCC
Q 009272 49 YIVIGGGTAGCPLAASLSQ-N---ASVLLL-ERGDS 79 (538)
Q Consensus 49 vIIVGsG~aG~~~A~~La~-g---~~Vlvl-E~G~~ 79 (538)
+.|||+|-.|.+++..|.+ | .+|+++ ++.+.
T Consensus 2 I~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~ 37 (96)
T PF03807_consen 2 IGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPE 37 (96)
T ss_dssp EEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHH
T ss_pred EEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHH
Confidence 5789999999999999998 8 899976 77763
No 477
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=62.82 E-value=7.2 Score=30.29 Aligned_cols=30 Identities=30% Similarity=0.511 Sum_probs=26.4
Q ss_pred ccEEEECCCCchHHHhhhhcC-C-CeEEEEec
Q 009272 47 YDYIVIGGGTAGCPLAASLSQ-N-ASVLLLER 76 (538)
Q Consensus 47 ~DvIIVGsG~aG~~~A~~La~-g-~~VlvlE~ 76 (538)
-.++|+|.|..|..+|..|.+ + .+|.+.++
T Consensus 24 ~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 24 KTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 359999999999999999988 4 68999888
No 478
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=62.47 E-value=5.6 Score=39.28 Aligned_cols=30 Identities=33% Similarity=0.521 Sum_probs=26.6
Q ss_pred EEEECCCCchHHHhhhhcC-CC-eEEEEeccC
Q 009272 49 YIVIGGGTAGCPLAASLSQ-NA-SVLLLERGD 78 (538)
Q Consensus 49 vIIVGsG~aG~~~A~~La~-g~-~VlvlE~G~ 78 (538)
|.|||+|..|..+|..|+. +. .|.|+|...
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e 32 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVE 32 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCC
Confidence 4799999999999999987 65 999999874
No 479
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=62.38 E-value=5.6 Score=44.87 Aligned_cols=32 Identities=25% Similarity=0.396 Sum_probs=28.7
Q ss_pred cEEEECCCCchHHHhhhhcC-CCe-EEEEeccCC
Q 009272 48 DYIVIGGGTAGCPLAASLSQ-NAS-VLLLERGDS 79 (538)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g~~-VlvlE~G~~ 79 (538)
.|+|||+|..|+-+|..|.+ |.+ |.|+++...
T Consensus 572 ~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~~ 605 (752)
T PRK12778 572 KVAVVGGGNTAMDSARTAKRLGAERVTIVYRRSE 605 (752)
T ss_pred cEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCc
Confidence 69999999999999999998 876 999998753
No 480
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=62.31 E-value=6.4 Score=38.80 Aligned_cols=33 Identities=30% Similarity=0.374 Sum_probs=29.7
Q ss_pred CccEEEECCCCchHHHhhhhcC-CCeEEEEeccC
Q 009272 46 YYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD 78 (538)
Q Consensus 46 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (538)
.-.++|||.|..|..+|..|.. |.+|.++++-+
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~ 185 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKALGANVTVGARKS 185 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 3569999999999999999999 99999998874
No 481
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=62.27 E-value=18 Score=38.23 Aligned_cols=62 Identities=19% Similarity=0.278 Sum_probs=42.1
Q ss_pred hcCCCCeEEEeccEEEEEEecCCCCCCCeEEEEEEEe---C-------CCCeEEEEeccCCCceEEEcCCCcCC-HHHHH
Q 009272 220 YANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRD---A-------TDAEHIAYLRNGPKNEIIVSAGALGS-PQLLM 288 (538)
Q Consensus 220 ~~~~~~~~i~~~~~V~~I~~~~~~~~~~~~~gV~~~~---~-------~g~~~~~~~~~~~a~~VVLaaGai~t-p~lLl 288 (538)
.+.+.|+++++++.+++|..+++ ++++|++.. . .++..++ .++.||+|.|...+ ..++.
T Consensus 338 ~~~~~GV~i~~~~~~~~i~~~~g-----~v~~V~~~~~~~~~g~~~~~~g~~~~i-----~~D~VI~A~G~~p~~~~l~~ 407 (471)
T PRK12810 338 NAHEEGVEREFNVQTKEFEGENG-----KVTGVKVVRTELGEGDFEPVEGSEFVL-----PADLVLLAMGFTGPEAGLLA 407 (471)
T ss_pred HHHHcCCeEEeccCceEEEccCC-----EEEEEEEEEEEecCCCccccCCceEEE-----ECCEEEECcCcCCCchhhcc
Confidence 34567999999999999975444 888887642 1 2333444 58999999996544 34544
Q ss_pred HcC
Q 009272 289 LSG 291 (538)
Q Consensus 289 ~SG 291 (538)
..|
T Consensus 408 ~~g 410 (471)
T PRK12810 408 QFG 410 (471)
T ss_pred ccC
Confidence 444
No 482
>PRK06223 malate dehydrogenase; Reviewed
Probab=62.12 E-value=6.8 Score=38.79 Aligned_cols=31 Identities=29% Similarity=0.482 Sum_probs=27.2
Q ss_pred cEEEECCCCchHHHhhhhcC-CC-eEEEEeccC
Q 009272 48 DYIVIGGGTAGCPLAASLSQ-NA-SVLLLERGD 78 (538)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g~-~VlvlE~G~ 78 (538)
-+.|||+|..|..+|..|+. |. .|.|+|.-.
T Consensus 4 KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~ 36 (307)
T PRK06223 4 KISIIGAGNVGATLAHLLALKELGDVVLFDIVE 36 (307)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEEECCC
Confidence 48999999999999999998 65 899999843
No 483
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=61.89 E-value=6.7 Score=38.04 Aligned_cols=32 Identities=25% Similarity=0.420 Sum_probs=28.3
Q ss_pred ccEEEECCCCchHHHhhhhcC-CCeEEEEeccC
Q 009272 47 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD 78 (538)
Q Consensus 47 ~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (538)
-.++|+|+|..|..+|..|++ |.+|.++.|..
T Consensus 118 k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~ 150 (270)
T TIGR00507 118 QRVLIIGAGGAARAVALPLLKADCNVIIANRTV 150 (270)
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 358999999999999999999 88999997754
No 484
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=61.56 E-value=6.6 Score=43.88 Aligned_cols=31 Identities=23% Similarity=0.289 Sum_probs=28.2
Q ss_pred cEEEECCCCchHHHhhhhc-C-CCeEEEEeccC
Q 009272 48 DYIVIGGGTAGCPLAASLS-Q-NASVLLLERGD 78 (538)
Q Consensus 48 DvIIVGsG~aG~~~A~~La-~-g~~VlvlE~G~ 78 (538)
-|.|||+|..|...|..++ . |..|.++|..+
T Consensus 311 ~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~ 343 (708)
T PRK11154 311 KVGVLGGGLMGGGIAYVTATKAGLPVRIKDINP 343 (708)
T ss_pred EEEEECCchhhHHHHHHHHHHcCCeEEEEeCCH
Confidence 4899999999999999988 7 99999999864
No 485
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=61.30 E-value=6.4 Score=41.80 Aligned_cols=34 Identities=24% Similarity=0.284 Sum_probs=29.6
Q ss_pred CccEEEECCCCchHHHhhhhcC-CCeEEEEeccCC
Q 009272 46 YYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 79 (538)
Q Consensus 46 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (538)
.-.|+|+|+|+.|+.++.-+.. |.+|.++|..+.
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~ 199 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPE 199 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 4679999999999999888877 999999988763
No 486
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=61.21 E-value=6.9 Score=41.27 Aligned_cols=31 Identities=23% Similarity=0.352 Sum_probs=27.6
Q ss_pred EEEECCCCchHHHhhhhcC-C--CeEEEEeccCC
Q 009272 49 YIVIGGGTAGCPLAASLSQ-N--ASVLLLERGDS 79 (538)
Q Consensus 49 vIIVGsG~aG~~~A~~La~-g--~~VlvlE~G~~ 79 (538)
+.|||.|..|+.+|..||+ | .+|+.+|..+.
T Consensus 4 I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~ 37 (473)
T PLN02353 4 ICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVP 37 (473)
T ss_pred EEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHH
Confidence 8999999999999999998 5 78999987653
No 487
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=61.17 E-value=6.3 Score=40.82 Aligned_cols=31 Identities=16% Similarity=0.487 Sum_probs=27.4
Q ss_pred EEEECCCCchHHHhhhhcC-CC------eEEEEeccCC
Q 009272 49 YIVIGGGTAGCPLAASLSQ-NA------SVLLLERGDS 79 (538)
Q Consensus 49 vIIVGsG~aG~~~A~~La~-g~------~VlvlE~G~~ 79 (538)
|+|||+|..||-++..|+. |. ++.|++....
T Consensus 2 VlvVGaGGlGcE~lKnLal~Gv~~g~~G~I~IvD~D~I 39 (435)
T cd01490 2 VFLVGAGAIGCELLKNFALMGVGTGESGEITVTDMDNI 39 (435)
T ss_pred EEEECCCHHHHHHHHHHHHcCCCcCCCCeEEEECCCCc
Confidence 7999999999999999999 86 7888877654
No 488
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=61.14 E-value=7.2 Score=36.51 Aligned_cols=29 Identities=24% Similarity=0.415 Sum_probs=25.8
Q ss_pred CccEEEECCCCchHHHhhhhcC-CCeEEEE
Q 009272 46 YYDYIVIGGGTAGCPLAASLSQ-NASVLLL 74 (538)
Q Consensus 46 ~~DvIIVGsG~aG~~~A~~La~-g~~Vlvl 74 (538)
..-|+|||||..++-=+..|.+ |.+|.|+
T Consensus 25 ~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVV 54 (223)
T PRK05562 25 KIKVLIIGGGKAAFIKGKTFLKKGCYVYIL 54 (223)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEE
Confidence 4569999999999888888888 9999998
No 489
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=61.07 E-value=7.6 Score=35.48 Aligned_cols=31 Identities=35% Similarity=0.557 Sum_probs=27.2
Q ss_pred ccEEEECC-CCchHHHhhhhcC-CCeEEEEecc
Q 009272 47 YDYIVIGG-GTAGCPLAASLSQ-NASVLLLERG 77 (538)
Q Consensus 47 ~DvIIVGs-G~aG~~~A~~La~-g~~VlvlE~G 77 (538)
-.++|+|+ |..|..+|..|++ |.+|.++.|.
T Consensus 29 ~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~ 61 (194)
T cd01078 29 KTAVVLGGTGPVGQRAAVLLAREGARVVLVGRD 61 (194)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 45999996 9999999999999 8999999765
No 490
>PF10518 TAT_signal: TAT (twin-arginine translocation) pathway signal sequence; InterPro: IPR019546 The twin-arginine translocation (Tat) pathway serves the role of transporting folded proteins across energy-transducing membranes []. Homologues of the genes that encode the transport apparatus occur in archaea, bacteria, chloroplasts, and plant mitochondria []. In bacteria, the Tat pathway catalyses the export of proteins from the cytoplasm across the inner/cytoplasmic membrane. In chloroplasts, the Tat components are found in the thylakoid membrane and direct the import of proteins from the stroma. The Tat pathway acts separately from the general secretory (Sec) pathway, which transports proteins in an unfolded state []. It is generally accepted that the primary role of the Tat system is to translocate fully folded proteins across membranes. An example of proteins that need to be exported in their 3D conformation are redox proteins that have acquired complex multi-atom cofactors in the bacterial cytoplasm (or the chloroplast stroma or mitochondrial matrix). They include hydrogenases, formate dehydrogenases, nitrate reductases, trimethylamine N-oxide (TMAO) reductases and dimethyl sulphoxide (DMSO) reductases [, ]. The Tat system can also export whole heteroligomeric complexes in which some proteins have no Tat signal. This is the case of the DMSO reductase or formate dehydrogenase complexes. But there are also other cases where the physiological rationale for targeting a protein to the Tat signal is less obvious. Indeed, there are examples of homologous proteins that are in some cases targeted to the Tat pathway and in other cases to the Sec apparatus. Some examples are: copper nitrite reductases, flavin domains of flavocytochrome c and N-acetylmuramoyl-L-alanine amidases []. In halophilic archaea such as Halobacterium almost all secreted proteins appear to be Tat targeted. It has been proposed to be a response to the difficulties these organisms would otherwise face in successfully folding proteins extracellularly at high ionic strength []. The Tat signal peptide consists of three motifs: the positively charged N-terminal motif, the hydrophobic region and the C-terminal region that generally ends with a consensus short motif (A-x-A) specifying cleavage by signal peptidase. Sequence analysis revealed that signal peptides capable of targeting the Tat protein contain the consensus sequence [ST]-R-R-x-F-L-K. The nearly invariant twin-arginine gave rise to the pathway's name. In addition the h-region of Tat signal peptides is typically less hydrophobic than that of Sec-specific signal peptides [, ].
Probab=60.98 E-value=7.2 Score=22.77 Aligned_cols=20 Identities=15% Similarity=-0.089 Sum_probs=13.7
Q ss_pred CCccchhHHHHHHHHHHHHh
Q 009272 1 MDLRCLRLSFVATLATFLFF 20 (538)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~ 20 (538)
|+||.|..+.+++.++.++.
T Consensus 2 ~sRR~fLk~~~a~~a~~~~~ 21 (26)
T PF10518_consen 2 LSRRQFLKGGAAAAAAAALG 21 (26)
T ss_pred CcHHHHHHHHHHHHHHHHhc
Confidence 67888887777666665443
No 491
>PRK08017 oxidoreductase; Provisional
Probab=60.92 E-value=7.7 Score=36.89 Aligned_cols=30 Identities=23% Similarity=0.231 Sum_probs=27.0
Q ss_pred EEEECC-CCchHHHhhhhcC-CCeEEEEeccC
Q 009272 49 YIVIGG-GTAGCPLAASLSQ-NASVLLLERGD 78 (538)
Q Consensus 49 vIIVGs-G~aG~~~A~~La~-g~~VlvlE~G~ 78 (538)
++|+|+ |..|..+|.+|++ |.+|+++.+..
T Consensus 5 vlVtGasg~IG~~la~~l~~~g~~v~~~~r~~ 36 (256)
T PRK08017 5 VLITGCSSGIGLEAALELKRRGYRVLAACRKP 36 (256)
T ss_pred EEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence 899998 9999999999998 99999987754
No 492
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=60.84 E-value=7.4 Score=39.97 Aligned_cols=31 Identities=26% Similarity=0.273 Sum_probs=27.5
Q ss_pred EEEECCCCchHHHhhhhcCCCeEEEEeccCC
Q 009272 49 YIVIGGGTAGCPLAASLSQNASVLLLERGDS 79 (538)
Q Consensus 49 vIIVGsG~aG~~~A~~La~g~~VlvlE~G~~ 79 (538)
|.|||.|..|+..|.-++.|++|+++|+...
T Consensus 3 I~VIGlGyvGl~~A~~lA~G~~VigvD~d~~ 33 (388)
T PRK15057 3 ITISGTGYVGLSNGLLIAQNHEVVALDILPS 33 (388)
T ss_pred EEEECCCHHHHHHHHHHHhCCcEEEEECCHH
Confidence 7899999999999977777999999998764
No 493
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=60.15 E-value=7.5 Score=40.65 Aligned_cols=33 Identities=27% Similarity=0.258 Sum_probs=29.8
Q ss_pred ccEEEECCCCchHHHhhhhcC-CCeEEEEeccCC
Q 009272 47 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 79 (538)
Q Consensus 47 ~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (538)
--++|||.|..|..+|.+|.. |.+|++.|+.+.
T Consensus 255 KtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~ 288 (476)
T PTZ00075 255 KTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPI 288 (476)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch
Confidence 359999999999999999998 999999998764
No 494
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=60.09 E-value=7.3 Score=39.85 Aligned_cols=34 Identities=21% Similarity=0.340 Sum_probs=29.9
Q ss_pred CccEEEECCCCchHHHhhhhcC-CC-eEEEEeccCC
Q 009272 46 YYDYIVIGGGTAGCPLAASLSQ-NA-SVLLLERGDS 79 (538)
Q Consensus 46 ~~DvIIVGsG~aG~~~A~~La~-g~-~VlvlE~G~~ 79 (538)
..-|+|||.|..|+.+|..|+. |. ++.+++....
T Consensus 135 ~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d~v 170 (376)
T PRK08762 135 EARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDVV 170 (376)
T ss_pred cCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEe
Confidence 5679999999999999999999 85 8999987754
No 495
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=59.84 E-value=6.1 Score=38.75 Aligned_cols=30 Identities=23% Similarity=0.369 Sum_probs=27.6
Q ss_pred EEEECCCCchHHHhhhhcC-CCeEEEEeccC
Q 009272 49 YIVIGGGTAGCPLAASLSQ-NASVLLLERGD 78 (538)
Q Consensus 49 vIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (538)
|-|||.|..|...|.+|++ |.+|.+.++.+
T Consensus 2 IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~ 32 (291)
T TIGR01505 2 VGFIGLGIMGSPMSINLAKAGYQLHVTTIGP 32 (291)
T ss_pred EEEEEecHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 6799999999999999999 99999998765
No 496
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=59.67 E-value=7.6 Score=37.95 Aligned_cols=32 Identities=16% Similarity=0.285 Sum_probs=27.6
Q ss_pred ccEEEECCCCchHHHhhhhcC-CC-eEEEEeccC
Q 009272 47 YDYIVIGGGTAGCPLAASLSQ-NA-SVLLLERGD 78 (538)
Q Consensus 47 ~DvIIVGsG~aG~~~A~~La~-g~-~VlvlE~G~ 78 (538)
--++|+|+|-++-++|+.|++ |. +|.|+.|..
T Consensus 128 k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~ 161 (283)
T PRK14027 128 DSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDT 161 (283)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCH
Confidence 358999999999999999998 74 799997754
No 497
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=59.53 E-value=7.7 Score=37.93 Aligned_cols=32 Identities=19% Similarity=0.402 Sum_probs=27.9
Q ss_pred ccEEEECCCCchHHHhhhhcC-CC-eEEEEeccC
Q 009272 47 YDYIVIGGGTAGCPLAASLSQ-NA-SVLLLERGD 78 (538)
Q Consensus 47 ~DvIIVGsG~aG~~~A~~La~-g~-~VlvlE~G~ 78 (538)
-.++|||+|-+|-++|+.|++ |. +|.|+.|..
T Consensus 126 k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~ 159 (282)
T TIGR01809 126 FRGLVIGAGGTSRAAVYALASLGVTDITVINRNP 159 (282)
T ss_pred ceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCH
Confidence 469999999999999999999 84 799997753
No 498
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=59.41 E-value=7.4 Score=40.05 Aligned_cols=34 Identities=24% Similarity=0.303 Sum_probs=29.9
Q ss_pred CccEEEECCCCchHHHhhhhcC-CC-eEEEEeccCC
Q 009272 46 YYDYIVIGGGTAGCPLAASLSQ-NA-SVLLLERGDS 79 (538)
Q Consensus 46 ~~DvIIVGsG~aG~~~A~~La~-g~-~VlvlE~G~~ 79 (538)
+..|+|||.|.-|+.+|..|+. |. ++.|++-...
T Consensus 42 ~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~v 77 (392)
T PRK07878 42 NARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDVV 77 (392)
T ss_pred cCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEe
Confidence 5679999999999999999999 84 8999887654
No 499
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=59.21 E-value=7.4 Score=37.95 Aligned_cols=32 Identities=19% Similarity=0.347 Sum_probs=28.4
Q ss_pred ccEEEECCCCchHHHhhhhcC-C-CeEEEEeccC
Q 009272 47 YDYIVIGGGTAGCPLAASLSQ-N-ASVLLLERGD 78 (538)
Q Consensus 47 ~DvIIVGsG~aG~~~A~~La~-g-~~VlvlE~G~ 78 (538)
-.++|+|+|-+|..+|..|++ | .+|.|+.|..
T Consensus 124 k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~ 157 (278)
T PRK00258 124 KRILILGAGGAARAVILPLLDLGVAEITIVNRTV 157 (278)
T ss_pred CEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence 469999999999999999998 8 7999998764
No 500
>PRK12839 hypothetical protein; Provisional
Probab=59.07 E-value=14 Score=40.13 Aligned_cols=36 Identities=31% Similarity=0.578 Sum_probs=33.6
Q ss_pred CCCccEEEECCCCchHHHhhhhcC-CCeEEEEeccCC
Q 009272 44 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 79 (538)
Q Consensus 44 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (538)
..++||||||+|.+|+++|+.|++ |.+|+|||++..
T Consensus 6 ~~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~ 42 (572)
T PRK12839 6 THTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKAST 42 (572)
T ss_pred CCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 457999999999999999999999 999999999875
Done!