Query 009276
Match_columns 538
No_of_seqs 182 out of 1406
Neff 7.3
Searched_HMMs 46136
Date Thu Mar 28 22:35:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009276.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009276hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2466 Uridine permease/thiam 100.0 9.5E-96 2E-100 749.3 31.1 455 69-524 34-518 (572)
2 COG1953 FUI1 Cytosine/uracil/t 100.0 2.7E-93 5.9E-98 746.2 42.2 445 72-527 22-492 (497)
3 PRK11375 allantoin permease; P 100.0 8E-81 1.7E-85 674.9 42.5 444 71-526 7-476 (484)
4 TIGR00800 ncs1 NCS1 nucleoside 100.0 3.3E-66 7.1E-71 557.2 37.0 401 78-486 1-433 (442)
5 PF02133 Transp_cyt_pur: Perme 100.0 1.5E-63 3.3E-68 536.4 21.0 416 83-507 1-440 (440)
6 PRK11017 codB cytosine permeas 100.0 1.2E-58 2.6E-63 492.4 35.4 379 81-527 1-400 (404)
7 TIGR02358 thia_cytX probable h 100.0 1E-53 2.2E-58 452.0 35.0 360 99-519 26-386 (386)
8 COG1457 CodB Purine-cytosine p 100.0 5.6E-52 1.2E-56 435.5 33.2 397 80-527 10-438 (442)
9 TIGR00814 stp serine transport 98.0 0.003 6.6E-08 67.5 24.8 131 103-245 31-168 (397)
10 TIGR00905 2A0302 transporter, 97.9 0.046 9.9E-07 59.8 34.4 119 103-233 42-163 (473)
11 PF01566 Nramp: Natural resist 97.9 0.0038 8.3E-08 65.8 24.2 74 102-175 13-86 (358)
12 PF03222 Trp_Tyr_perm: Tryptop 97.8 0.03 6.5E-07 59.9 29.9 187 97-301 29-217 (394)
13 PRK10484 putative transporter; 97.8 0.048 1E-06 60.5 31.8 105 132-247 102-210 (523)
14 TIGR01773 GABAperm gamma-amino 97.8 0.045 9.7E-07 59.4 30.7 111 103-231 46-158 (452)
15 PRK10644 arginine:agmatin anti 97.8 0.099 2.1E-06 56.6 34.9 116 104-234 42-160 (445)
16 TIGR00908 2A0305 ethanolamine 97.8 0.088 1.9E-06 56.9 32.4 84 132-233 72-155 (442)
17 PRK11387 S-methylmethionine tr 97.7 0.05 1.1E-06 59.5 30.6 32 200-231 130-161 (471)
18 PRK09442 panF sodium/panthothe 97.7 0.058 1.3E-06 59.2 30.5 109 125-252 101-212 (483)
19 PRK15049 L-asparagine permease 97.7 0.13 2.9E-06 56.7 33.6 112 103-231 62-176 (499)
20 COG0733 Na+-dependent transpor 97.7 0.021 4.6E-07 60.9 25.6 50 199-248 144-194 (439)
21 TIGR00837 araaP aromatic amino 97.7 0.023 5E-07 60.1 26.2 126 101-239 27-154 (381)
22 PRK00701 manganese transport p 97.7 0.021 4.5E-07 62.0 25.9 62 103-164 66-127 (439)
23 TIGR02119 panF sodium/pantothe 97.7 0.073 1.6E-06 58.2 30.1 110 124-252 99-211 (471)
24 TIGR00813 sss transporter, SSS 97.6 0.027 5.8E-07 60.3 26.1 135 96-252 33-170 (407)
25 TIGR00912 2A0309 spore germina 97.6 0.019 4.1E-07 60.2 24.1 116 103-235 35-151 (359)
26 TIGR00930 2a30 K-Cl cotranspor 97.6 0.29 6.2E-06 58.2 37.3 127 101-236 110-240 (953)
27 PRK15419 proline:sodium sympor 97.6 0.048 1E-06 60.2 28.0 105 131-254 108-216 (502)
28 TIGR03813 put_Glu_GABA_T putat 97.6 0.18 3.9E-06 55.1 36.4 68 103-171 31-102 (474)
29 TIGR00796 livcs branched-chain 97.6 0.16 3.4E-06 54.1 30.5 223 200-433 112-347 (378)
30 PRK10238 aromatic amino acid t 97.5 0.17 3.6E-06 55.2 30.7 113 103-233 46-160 (456)
31 PF05525 Branch_AA_trans: Bran 97.5 0.029 6.2E-07 60.3 23.2 293 199-520 118-426 (427)
32 TIGR02121 Na_Pro_sym sodium/pr 97.4 0.19 4.1E-06 55.3 28.9 105 131-254 104-212 (487)
33 PRK12488 acetate permease; Pro 97.4 0.23 5E-06 55.5 29.7 131 96-248 97-230 (549)
34 TIGR00913 2A0310 amino acid pe 97.3 0.25 5.3E-06 54.0 29.1 110 103-230 37-149 (478)
35 TIGR00909 2A0306 amino acid tr 97.3 0.38 8.3E-06 51.6 34.4 131 104-238 38-172 (429)
36 PRK10746 putative transport pr 97.2 0.45 9.8E-06 51.9 32.0 111 103-231 44-156 (461)
37 PRK10655 potE putrescine trans 97.2 0.42 9.2E-06 51.6 33.5 115 103-233 39-157 (438)
38 PRK15433 branched-chain amino 97.2 0.18 3.8E-06 54.5 25.6 294 199-526 122-434 (439)
39 COG3949 Uncharacterized membra 97.2 0.25 5.3E-06 51.0 24.7 116 104-238 38-155 (349)
40 KOG1303 Amino acid transporter 97.2 0.16 3.4E-06 55.1 24.6 118 99-228 66-192 (437)
41 COG1914 MntH Mn2+ and Fe2+ tra 97.2 0.34 7.4E-06 52.0 26.7 74 102-175 48-121 (416)
42 PF13520 AA_permease_2: Amino 97.2 0.11 2.5E-06 55.5 23.6 117 104-233 32-152 (426)
43 PF03845 Spore_permease: Spore 97.1 0.16 3.4E-06 52.6 23.6 123 103-242 33-156 (320)
44 TIGR01197 nramp NRAMP (natural 97.1 0.61 1.3E-05 49.9 29.3 49 104-152 37-85 (390)
45 TIGR03810 arg_ornith_anti argi 97.0 0.71 1.5E-05 50.4 34.8 116 104-232 37-156 (468)
46 PRK10483 tryptophan permease; 96.9 0.5 1.1E-05 50.8 25.0 184 97-300 37-224 (414)
47 PRK10197 gamma-aminobutyrate t 96.8 0.99 2.2E-05 49.0 32.7 113 103-233 26-140 (446)
48 PRK09664 tryptophan permease T 96.8 0.9 1.9E-05 48.9 26.1 187 97-300 35-225 (415)
49 PF00474 SSF: Sodium:solute sy 96.8 0.017 3.6E-07 61.8 13.2 136 96-252 36-174 (406)
50 PRK09395 actP acetate permease 96.6 1.6 3.5E-05 48.8 30.9 135 96-252 99-237 (551)
51 PRK10249 phenylalanine transpo 96.6 1.4 3E-05 48.0 30.4 111 103-231 55-167 (458)
52 PTZ00206 amino acid transporte 96.5 1.3 2.8E-05 48.5 25.4 76 102-177 91-167 (467)
53 PF01235 Na_Ala_symp: Sodium:a 96.4 1 2.2E-05 48.4 23.6 47 200-246 140-186 (416)
54 PRK11049 D-alanine/D-serine/gl 96.4 1.9 4.2E-05 47.0 32.3 110 104-232 55-167 (469)
55 COG0814 SdaC Amino acid permea 96.3 2.2 4.7E-05 46.1 28.9 186 98-299 36-224 (415)
56 PRK10580 proY putative proline 96.2 2.4 5.2E-05 46.1 32.2 112 103-232 43-156 (457)
57 PRK10435 cadB lysine/cadaverin 96.2 2.4 5.2E-05 45.8 33.8 31 202-233 125-155 (435)
58 PRK11357 frlA putative fructos 96.1 2.6 5.6E-05 45.6 33.6 22 211-232 139-160 (445)
59 PRK15132 tyrosine transporter 96.1 2.5 5.4E-05 45.4 26.9 180 98-298 30-211 (403)
60 TIGR03648 Na_symport_lg probab 96.1 3.1 6.8E-05 46.5 29.6 98 126-242 89-189 (552)
61 TIGR02711 symport_actP cation/ 96.1 3.2 7E-05 46.4 29.3 99 131-248 130-230 (549)
62 PRK15238 inner membrane transp 96.0 3.3 7.2E-05 45.6 34.7 40 122-161 58-100 (496)
63 PRK13629 threonine/serine tran 95.8 3.2 6.9E-05 45.0 23.5 136 98-246 46-185 (443)
64 COG1114 BrnQ Branched-chain am 95.5 4.3 9.2E-05 43.4 24.9 293 199-524 120-431 (431)
65 TIGR00910 2A0307_GadC glutamat 95.4 5.4 0.00012 44.2 35.7 85 132-229 67-153 (507)
66 COG0591 PutP Na+/proline sympo 95.3 6 0.00013 43.7 31.8 140 96-253 68-210 (493)
67 TIGR00906 2A0303 cationic amin 95.3 6.5 0.00014 44.1 30.1 131 104-235 64-197 (557)
68 TIGR00911 2A0308 L-type amino 95.0 7.2 0.00016 42.9 37.6 29 207-235 173-201 (501)
69 TIGR00907 2A0304 amino acid pe 93.7 13 0.00028 40.6 31.1 124 104-234 49-178 (482)
70 COG1113 AnsP Gamma-aminobutyra 93.5 13 0.00028 40.3 25.4 111 102-231 46-159 (462)
71 COG0833 LysP Amino acid transp 93.2 16 0.00035 40.4 28.2 116 101-233 77-194 (541)
72 PF00324 AA_permease: Amino ac 93.2 0.61 1.3E-05 51.0 10.9 124 103-240 30-158 (478)
73 PF01490 Aa_trans: Transmembra 92.0 0.029 6.2E-07 59.6 -1.4 49 128-176 65-113 (409)
74 KOG2349 Na+:iodide/myo-inosito 90.2 2.6 5.6E-05 47.1 11.4 278 134-437 111-430 (585)
75 COG0531 PotE Amino acid transp 88.6 38 0.00082 36.3 32.7 112 122-245 68-180 (466)
76 PRK11021 putative transporter; 86.3 50 0.0011 35.2 33.6 110 103-229 33-145 (410)
77 PF00209 SNF: Sodium:neurotran 85.5 15 0.00032 40.9 13.9 33 350-383 349-381 (523)
78 PRK10836 lysine transporter; P 84.7 67 0.0015 35.2 31.7 28 203-230 134-161 (489)
79 TIGR00835 agcS amino acid carr 80.5 92 0.002 33.8 24.8 115 105-238 85-205 (425)
80 TIGR03428 ureacarb_perm permea 76.3 1.2E+02 0.0027 33.0 33.7 126 105-234 50-179 (475)
81 KOG1289 Amino acid transporter 76.0 1.4E+02 0.003 33.4 23.5 49 199-247 177-225 (550)
82 COG1115 AlsT Na+/alanine sympo 70.6 1.7E+02 0.0036 32.0 21.0 46 199-244 183-228 (452)
83 PRK03356 L-carnitine/gamma-but 65.7 2.2E+02 0.0049 31.6 16.8 124 93-236 138-270 (504)
84 PF05525 Branch_AA_trans: Bran 62.1 1.9E+02 0.0041 31.5 14.1 105 103-226 223-338 (427)
85 PF02028 BCCT: BCCT family tra 59.5 2.8E+02 0.0061 30.7 24.0 40 199-238 219-259 (485)
86 COG1292 BetT Choline-glycine b 59.3 2.9E+02 0.0064 30.8 27.3 122 93-234 140-268 (537)
87 PRK09950 putative transporter; 56.6 3.2E+02 0.0069 30.4 27.9 37 200-236 230-267 (506)
88 PLN03074 auxin influx permease 55.2 3.2E+02 0.007 30.0 23.9 33 134-166 123-155 (473)
89 PRK09928 choline transport pro 55.0 3.9E+02 0.0084 30.9 24.3 37 199-235 236-273 (679)
90 KOG3660 Sodium-neurotransmitte 54.2 3.9E+02 0.0084 30.7 17.9 46 199-244 216-261 (629)
91 KOG1286 Amino acid transporter 54.1 3.7E+02 0.0079 30.3 26.1 30 200-229 162-191 (554)
92 TIGR00796 livcs branched-chain 42.6 4.5E+02 0.0097 28.0 13.6 24 135-158 259-282 (378)
93 PRK15015 carbon starvation pro 39.1 4.1E+02 0.009 30.5 12.4 83 76-158 73-172 (701)
94 KOG4812 Golgi-associated prote 32.6 1.5E+02 0.0032 29.5 6.8 27 201-227 227-253 (262)
95 PF04306 DUF456: Protein of un 25.9 3.7E+02 0.0081 24.3 8.0 23 418-442 80-102 (140)
96 PF02554 CstA: Carbon starvati 25.0 6.3E+02 0.014 26.9 10.4 82 76-157 42-140 (376)
97 KOG1304 Amino acid transporter 23.9 9.8E+02 0.021 26.2 20.0 38 140-177 133-170 (449)
98 PRK15433 branched-chain amino 23.9 9.7E+02 0.021 26.2 13.8 25 202-226 317-341 (439)
99 KOG1291 Mn2+ and Fe2+ transpor 23.1 7.5E+02 0.016 27.3 10.6 40 104-143 62-101 (503)
100 COG1114 BrnQ Branched-chain am 21.2 1.1E+03 0.023 25.7 13.9 109 103-232 225-343 (431)
101 COG4146 Predicted symporter [G 20.2 1.1E+03 0.024 25.4 18.7 48 390-439 382-430 (571)
No 1
>KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=100.00 E-value=9.5e-96 Score=749.25 Aligned_cols=455 Identities=38% Similarity=0.676 Sum_probs=433.3
Q ss_pred CCCCCCccccCCCCCCCCCCccch----------------------hhhhccCcHHHHHHHHHHHHHHHHHHHHhhcccc
Q 009276 69 DLEPHLTLRNEDLKPSTINERTFS----------------------CLVDLGMAWWQGIATVVAANVILLVPLVLTGHPG 126 (538)
Q Consensus 69 ~~~~~~~~~n~dl~Pip~~~Rtw~----------------------s~~~~GLs~~qal~aiiiG~~i~~~~~~l~g~~G 126 (538)
+...++.++|+||+|+|+++|||+ +.+.+|||+||+++++++|+++..+++.++|++|
T Consensus 34 ~s~~~~fL~N~DL~Pv~~~~Rtws~~~~~~fW~~~~fnv~Tw~ia~s~l~lGLswwq~~~tv~vG~~~~~~f~~lns~~G 113 (572)
T KOG2466|consen 34 ESLSESFLTNPDLKPVPPSRRTWSWWNYIAFWLADSFNVNTWMIAGSALELGLSWWQTWITVWVGYLFTAIFLVLNSRPG 113 (572)
T ss_pred chhccccccCCCCCcCCcccccccHHHHHHHHHhccccccceeehhhHHhccCCHHHHHHHHHHHHHHHHHHHHHccCCC
Confidence 344667899999999999999998 5789999999999999999999999999999999
Q ss_pred cccCCCcceehhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccCCCCCCCChhHHHHHHHH
Q 009276 127 TKYGIPFPVLARSSFGIKGAHIPTLLRALVGCGWYGIETWIGGEAVFLLLPKFIKQSSILSQSLPWLGTSPLEFACFIAF 206 (538)
Q Consensus 127 ~k~Gl~~~v~sR~~FG~~Gs~lp~li~~i~~igW~~v~~~~gg~al~~~l~~~~~~~~~~~~~~p~~g~t~~~~i~~ii~ 206 (538)
..||+++++++|++||++||.+|.++|.+++|+|||+|+|+||++++.++..+++++.+++|+++..++++.+++||++|
T Consensus 114 ~~yhIsFpv~sR~sFGiygS~~pIi~R~vma~vwYg~~awiGgecV~lmL~si~~~~~hipntl~~~~~tt~e~i~FfIF 193 (572)
T KOG2466|consen 114 SDYHISFPVLSRSSFGIYGSLWPIINRVVMACVWYGVNAWIGGECVQLMLKSIFKSFSHIPNTLGKPGTTTYEFIGFFIF 193 (572)
T ss_pred cccccceeeeeeeehhhhHhHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHhhhhhcCccccCCCCCchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999889999999999999
Q ss_pred HHHHHHHHhhchhhHHHHHhhhhhHHHHHHHHHHHHHHHhcCCCcccccccccCCchhhHHHHHHHHHHHHHHHHhHhcc
Q 009276 207 WLAQLAIVWKGIEGIRELEKYSAPILIILTSSFLFWAYVNAGGFGHMLSKSSKLSSSEFWSLFFPSLTANISFWATVALN 286 (538)
Q Consensus 207 ~~l~~~~~~~G~~~i~~~~~~~~p~~~v~~i~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ai~~~ig~~~~~~~~ 286 (538)
|+++.+..+++++.||+++.+++++...+++++++|++.++||.|++++.+.+.++++..|.++.+++.+++.+++.++|
T Consensus 194 wv~s~~~~~~~p~~ir~lf~~ka~~t~fA~~g~LIw~l~kAhG~G~l~~~~st~~gs~~aWa~~~~i~~~~~~fstl~~N 273 (572)
T KOG2466|consen 194 WVASLPFYWFPPYKIRHLFTWKAVLTPFAAFGFLIWLLKKAHGLGHLFDSKSTVSGSAHAWAFVRSIMSCIANFSTLIVN 273 (572)
T ss_pred HHHhhheeeccHHHhhhHHHHHHhhhHHHHHHHHHHHHHhcCCccccccCCCcccccchhHHHHHHHHHHHhccchhhcc
Confidence 99999999999999999999999999999999999999999999998876656666676667888999999999999999
Q ss_pred ccccccccccCCcchhhc-hhhhHHHHHHHHHHHHHhhhhhhhhhccccCHHHHHHHh-------hhhHHHHHHHHHHHH
Q 009276 287 IPDFTRYAKSQNDQILGQ-AGLPIFMGAFTFVGLAITCSTQVIFGRVISSPIQLLDQI-------GGITTRILGIIGISL 358 (538)
Q Consensus 287 ~sDysRy~k~~~~~~~g~-~g~p~~~~~~~~~G~~~~~a~~~~~G~~~~dp~~~l~~~-------g~~~~~~~~~l~i~l 358 (538)
+||||||+|++.+.+++| +.+|+...++.++|++.++++..+||+.+|||.|++.++ |.|++++++.+++.+
T Consensus 274 ~pDFsRF~ksp~a~~~~Ql~alp~~~~l~~liGVlv~sa~~~iYG~~~W~Pldil~~~l~~~y~~G~RAgvFfi~~~f~l 353 (572)
T KOG2466|consen 274 APDFSRFAKSPNAIWWGQLIALPLPFGLTPLIGVLVTSASKIIYGTNYWSPLDILNQWLDTNYSAGARAGVFFIGFGFAL 353 (572)
T ss_pred CchhHhhcCCCCccchhhhhhhhhhhhhhhheeeEehhhhhhhhcccccCHHHHHHHHhccccccccchhhhHHHHHHHH
Confidence 999999999999999999 889999999999999999999999999999999999987 557999999999999
Q ss_pred HHHHHhhhhhhhhhHHhHhhhcCcccccchhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHhhhHhHHHHHHhhhhhhh
Q 009276 359 ATITTNIAANVVAPANALVNLRPSIFTFRKGAILTALLGIAFQPWRLLKSSESFVYTWLVGYSALLGPIGGIILADYYLI 438 (538)
Q Consensus 359 a~i~~Ni~~N~ys~~~~l~~l~pk~~~~~r~~ii~avl~~~l~pw~l~~~~~~fl~~fL~~lg~~l~P~~gI~l~Dy~li 438 (538)
+|+++||++|.+++|+|+++++||++|+|||++++++++++++||+++++.++|+ ++|+.++++++|++||+++|||++
T Consensus 354 aql~~NISan~vaagnDl~~L~PkyinIrRG~~~~a~ia~a~~PWnll~SSs~F~-t~LssysvfLspiagViiaDyF~i 432 (572)
T KOG2466|consen 354 AQLGTNISANSVAAGNDLSALLPKYINIRRGALICAIIAWAICPWNLLSSSSKFL-TALSSYSVFLSPIAGVIIADYFLI 432 (572)
T ss_pred HHHhcchhccccccchhhHhhCcceEEecccHHHHHHHHHHhCchHHhccccHHH-HHHHHHHHHHhhccceEeehhhee
Confidence 9999999999999999999999999999999999999999999999999999999 899999999999999999999999
Q ss_pred hcCCCCcccccccCCCCcccccCCCchHHHHHHHHHHhhccccccccccccccccccchhccchhHHHHHHHHHHHHHHH
Q 009276 439 QGAKLSIKYLYSLNPNGAYYYSGGYNLVAIMALSIGILPVIPGFLQKVGLVVTIPNSFVVIYNNAWFFSFFLAGFVYWVL 518 (538)
Q Consensus 439 Rr~~~~~~~Ly~~~~~g~Y~y~~G~N~~ai~A~~~G~~~~~pg~~~~~g~~~~~~~~~~~~~~~s~~~g~~vs~vvY~~l 518 (538)
||++|+++++|+.++++.|+|++|+||||++||+||+++++||+..++|....++++..+.+++++++|+++++++|+.|
T Consensus 433 Rk~~~~i~~~y~~~~g~yY~~~~G~NwRA~vA~vcG~~P~lpG~a~~V~~~~~v~~G~~~~yy~~yf~sf~isf~vYwiL 512 (572)
T KOG2466|consen 433 RKGYYKITHLYSLSKGSYYYFKKGINWRAFVAYVCGMAPNLPGFAGSVGADIKVPDGAVKLYYLDYFFSFLISFLVYWIL 512 (572)
T ss_pred ecceeeeeeeeecCCCceeeeecCccHHHHHHHHhccccCCcchhhhcCcccccccceEEEEechHHHHHHHHHHHHHHH
Confidence 99999999999988777788889999999999999999999999999987778899999999999999999999999999
Q ss_pred hhccCC
Q 009276 519 SLLRGK 524 (538)
Q Consensus 519 ~~~~~~ 524 (538)
|+..+.
T Consensus 513 c~~fP~ 518 (572)
T KOG2466|consen 513 CLFFPV 518 (572)
T ss_pred HhhcCc
Confidence 987554
No 2
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=2.7e-93 Score=746.15 Aligned_cols=445 Identities=39% Similarity=0.771 Sum_probs=413.7
Q ss_pred CCCccccCCCCCCCCCCccch----------------------hhhhccCcHHHHHHHHHHHHHHHHHHHHhhccccccc
Q 009276 72 PHLTLRNEDLKPSTINERTFS----------------------CLVDLGMAWWQGIATVVAANVILLVPLVLTGHPGTKY 129 (538)
Q Consensus 72 ~~~~~~n~dl~Pip~~~Rtw~----------------------s~~~~GLs~~qal~aiiiG~~i~~~~~~l~g~~G~k~ 129 (538)
.+++++|+||+|+|+|+|||+ +++.+|||+||+++++++|+++..++|.++|++|.||
T Consensus 22 ~~~~lyN~DL~P~~~~~rtWg~~~~~~~W~~~~~nv~~~~~aa~~~~lGLS~~qallai~vG~~iv~i~m~Lng~~G~~~ 101 (497)
T COG1953 22 ASSFLYNEDLAPTPAEQRTWGWWNYFALWLGMVHNVPTYMLAAGLFELGLSPWQALLAILVGNLIVAIFMVLNGHAGSKY 101 (497)
T ss_pred cCccccCCCCCCCccccCcchHHHHHHHHHHhhccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhccCccccc
Confidence 467899999999999999999 5689999999999999999999999999999999999
Q ss_pred CCCcceehhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccCCC-CCCCChhHHHHHHHHHH
Q 009276 130 GIPFPVLARSSFGIKGAHIPTLLRALVGCGWYGIETWIGGEAVFLLLPKFIKQSSILSQSLP-WLGTSPLEFACFIAFWL 208 (538)
Q Consensus 130 Gl~~~v~sR~~FG~~Gs~lp~li~~i~~igW~~v~~~~gg~al~~~l~~~~~~~~~~~~~~p-~~g~t~~~~i~~ii~~~ 208 (538)
|+||++++|++||++|+.+|.++|++++|+|||+|+|.||.|++.++..++|. .+.++++. .+|+++.+++||++||+
T Consensus 102 gIpFpv~~RaSFGi~Ga~~p~l~R~i~A~~WyGvqty~Gg~av~llL~~i~~~-~~~~~~~~~~lg~tt~~~i~F~ifW~ 180 (497)
T COG1953 102 GIPFPVLSRASFGIYGANFPALIRAIVAIVWYGVQTYAGGLAVNLLLGSIFPS-LLIPNTLSPLLGLTTLELICFFIFWV 180 (497)
T ss_pred CCCchHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhccc-cccCCccccccCCcHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998 45677754 68999999999999999
Q ss_pred HHHHHHhhchhhHHHHHhhhhhHHHHHHHHHHHHHHHhcCCCccccccc-ccCCchhhHHHHHHHHHHHHHHHHhHhccc
Q 009276 209 AQLAIVWKGIEGIRELEKYSAPILIILTSSFLFWAYVNAGGFGHMLSKS-SKLSSSEFWSLFFPSLTANISFWATVALNI 287 (538)
Q Consensus 209 l~~~~~~~G~~~i~~~~~~~~p~~~v~~i~l~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~ai~~~ig~~~~~~~~~ 287 (538)
+|.++.++|+|.|||++.++.|+..+.++++++|++.++||.+...+.+ +..++++.++.++.+++.++++|++.++|+
T Consensus 181 l~~l~~~~g~~~Ir~~~~~a~p~~~~~~~gl~Iw~~~~a~g~~~~~~~p~~~~~~~~~~w~~~~~~~~~v~~~Atl~lN~ 260 (497)
T COG1953 181 LQLLVLFKGMESIRKFETWAGPLVYIAMLGLAIWALVKAGGSSILGELPAGTVSGSNSSWAFLAGIAAWVGFWATLALNI 260 (497)
T ss_pred HHHHHHhcCHHHHHHHHHHhchHHHHHHHHHHHHHHHhcCCcCccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999999999866665555 334556778889999999999999999999
Q ss_pred cccccccccCCcchhhc-hhhhHHHHHHHHHHHHHhhhhhhhhhccccCHHHHHHHhhhhHHH-HHHHHHHHHHHHHHhh
Q 009276 288 PDFTRYAKSQNDQILGQ-AGLPIFMGAFTFVGLAITCSTQVIFGRVISSPIQLLDQIGGITTR-ILGIIGISLATITTNI 365 (538)
Q Consensus 288 sDysRy~k~~~~~~~g~-~g~p~~~~~~~~~G~~~~~a~~~~~G~~~~dp~~~l~~~g~~~~~-~~~~l~i~la~i~~Ni 365 (538)
||||||+|++++++++| +++|+...++.++|++++++...+|||.+|||.|++.+++..... +++.++++++|+++|+
T Consensus 261 ~DFsRfa~s~~~~~~gq~~gLPv~~~l~~ligvv~tsa~~~lyG~~~w~P~di~~~~~~~~~~~fl~~l~~~iati~~Ni 340 (497)
T COG1953 261 PDFTRFAKSQKAQIWGQLVGLPVNFALFSLIGVVVTSASYILYGETIWDPLDIVARFLSGFYAAFLAGLTFAVATISTNI 340 (497)
T ss_pred chhhcccCChhhhhhccchhhhHHHHHHHHHHhhHHHHHHHhhCcccCCHHHHHHHhccchHHHHHHHHHHHHHHHhhhH
Confidence 99999999999999999 999999999999999999999999999999999999999755444 5889999999999999
Q ss_pred hhhhhhhHHhHhhhcCcccccchhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHhhhHhHHHHHHhhhhhhhhcCCCCc
Q 009276 366 AANVVAPANALVNLRPSIFTFRKGAILTALLGIAFQPWRLLKSSESFVYTWLVGYSALLGPIGGIILADYYLIQGAKLSI 445 (538)
Q Consensus 366 ~~N~ys~~~~l~~l~pk~~~~~r~~ii~avl~~~l~pw~l~~~~~~fl~~fL~~lg~~l~P~~gI~l~Dy~liRr~~~~~ 445 (538)
++|.+|+++|+++++||++|+||+.+++++++++++||+++++..+|. +||+.+|++++|++|||++|||++||+|+|+
T Consensus 341 ~aN~vsp~~D~s~l~Pk~in~krg~liaA~ial~~~PW~l~~s~s~f~-~~L~~yg~~LgpiaGVmiaDyflirk~~~~v 419 (497)
T COG1953 341 AANIVSPGYDLSALFPKYINIKRGGLIAAIIALLICPWNLLESSSSFT-TFLGSYGVFLGPIAGVMIADYFLVRKGRLNL 419 (497)
T ss_pred HhccCChHHHHHHhcccccchhhhHHHHHHHHHHHcChHHHcCccHHH-HHHHHHHHHHHHHHHHHHHHHHhhhcCccCh
Confidence 999999999999999999999999999999999999999999999987 8999999999999999999999999999999
Q ss_pred ccccccCCCCcccccCCCchHHHHHHHHHHhhccccccccccccccccccchhccchhHHHHHHHHHHHHHHHhhccCCC
Q 009276 446 KYLYSLNPNGAYYYSGGYNLVAIMALSIGILPVIPGFLQKVGLVVTIPNSFVVIYNNAWFFSFFLAGFVYWVLSLLRGKQ 525 (538)
Q Consensus 446 ~~Ly~~~~~g~Y~y~~G~N~~ai~A~~~G~~~~~pg~~~~~g~~~~~~~~~~~~~~~s~~~g~~vs~vvY~~l~~~~~~~ 525 (538)
+|||++ +|+|||.+|+||||++|+++|+++++||. + .++++....++++|++|+++++.+|+.|||.++.+
T Consensus 420 ~~ly~~--~G~y~y~~G~N~rA~~A~~~G~~~~l~Gv----~---~~~~~~~~~~~~~wF~G~~ia~~iY~~L~~~~p~~ 490 (497)
T COG1953 420 DELYTE--PGEYYYYGGWNWRAFAAYLCGVAPSLPGV----G---KVPPGLPPLYYYGWFVGVLLAFLIYWGLCKFFPFK 490 (497)
T ss_pred HHhcCC--CCCeEEecCcCHHHHHHHHHhhhccccch----h---cCCcccchhhhhhHHHHHHHHHHHHHHHHhhcCCC
Confidence 999986 79999999999999999999999999981 1 23455667899999999999999999999987764
Q ss_pred CC
Q 009276 526 NS 527 (538)
Q Consensus 526 ~~ 527 (538)
+.
T Consensus 491 ~~ 492 (497)
T COG1953 491 RT 492 (497)
T ss_pred CC
Confidence 43
No 3
>PRK11375 allantoin permease; Provisional
Probab=100.00 E-value=8e-81 Score=674.88 Aligned_cols=444 Identities=24% Similarity=0.488 Sum_probs=399.2
Q ss_pred CCCCccccCCCCCCCCCCccch----------------------hhhhccCcHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 009276 71 EPHLTLRNEDLKPSTINERTFS----------------------CLVDLGMAWWQGIATVVAANVILLVPLVLTGHPGTK 128 (538)
Q Consensus 71 ~~~~~~~n~dl~Pip~~~Rtw~----------------------s~~~~GLs~~qal~aiiiG~~i~~~~~~l~g~~G~k 128 (538)
..+++++|+|++|+|+|||||+ ++++.|||+||+++++++|+++++++++++|++|+|
T Consensus 7 ~~~~~~~n~dl~pvp~~~Rt~~~~~~~~~W~g~~~~i~~~~~~g~~l~~GLs~~~ai~ai~lG~~i~~~~~~l~g~~G~~ 86 (484)
T PRK11375 7 LFQQRGYSEDLLPKTQSQRTWKTFNYFTLWMGSVHNVPNYVMVGGFFILGLSTFSIMLAIILSAFFIAAVMVLNGAAGSK 86 (484)
T ss_pred CCCCCCcCCCCCcCCccccCCcHHHHHHHHHHHhccHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 3456799999999999999998 356789999999999999999999999999999999
Q ss_pred cCCCcceehhhhhccccchHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccCCCCCCCChhHHHHHHHHH
Q 009276 129 YGIPFPVLARSSFGIKGAHIPTLLRA-LVGCGWYGIETWIGGEAVFLLLPKFIKQSSILSQSLPWLGTSPLEFACFIAFW 207 (538)
Q Consensus 129 ~Gl~~~v~sR~~FG~~Gs~lp~li~~-i~~igW~~v~~~~gg~al~~~l~~~~~~~~~~~~~~p~~g~t~~~~i~~ii~~ 207 (538)
||+|+++++|++||++|+++|+++|+ +..+||+++|++++|++++.+++.++|++.+++|++|..|.+...+++++++|
T Consensus 87 ~Gl~~~v~sR~sFG~~Gs~l~~~~rai~~~igW~~vqt~~~g~al~~~l~~i~~~~~~~~~~~~~~g~~~~~~i~~~i~~ 166 (484)
T PRK11375 87 YGVPFAMILRASYGVRGALFPGLLRGGIAAIMWFGLQCYAGSLALLILIGKIWPGFLTLGGDFTLLGLSLPGLITFLIFW 166 (484)
T ss_pred cCCChhHhHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCCcHHHHHHHHHHH
Confidence 99999999999999999999999997 68899999999999999999999999999999999888888877899999999
Q ss_pred HHHHHHHhhchhhHHHHHhhhhhHHHHHHHHHHHHHHHhcCCCcccccccc--cCCchhhHHHHHHHHHHHHHHHHhHhc
Q 009276 208 LAQLAIVWKGIEGIRELEKYSAPILIILTSSFLFWAYVNAGGFGHMLSKSS--KLSSSEFWSLFFPSLTANISFWATVAL 285 (538)
Q Consensus 208 ~l~~~~~~~G~~~i~~~~~~~~p~~~v~~i~l~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~~ai~~~ig~~~~~~~ 285 (538)
++|+++.++|+|.++|+++++.|++.++++++.+|.+.+. |.++..+..+ ..++++.++.+..++++++|.|++.++
T Consensus 167 ~l~~~~~~~g~~~i~~l~~i~~p~~~i~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~i~~vig~~~~~~~ 245 (484)
T PRK11375 167 LVNVGIGFGGGKVLNKFTAILNPCIYIVFGGMAIWAISLV-GIGPIFDYIPSGIQKAENSGFLFLVVINAVVAVWAAPAV 245 (484)
T ss_pred HHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCchhhccCcccccCCcchHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999998888888988887 5666554322 222333456788899999999999999
Q ss_pred cccccccccccCCcchhhc-hhhhHHHHHHHHHHHHHhhhhhhhhhccccCHHHHHHHhhhhHHHHHHHHHHHHHHHHHh
Q 009276 286 NIPDFTRYAKSQNDQILGQ-AGLPIFMGAFTFVGLAITCSTQVIFGRVISSPIQLLDQIGGITTRILGIIGISLATITTN 364 (538)
Q Consensus 286 ~~sDysRy~k~~~~~~~g~-~g~p~~~~~~~~~G~~~~~a~~~~~G~~~~dp~~~l~~~g~~~~~~~~~l~i~la~i~~N 364 (538)
|++||+||+|++|++.++| +|+|+...++.++|++.+++....+|+..|||.+++.+++++...+++++.++++++++|
T Consensus 246 ~~~D~tRy~k~~~~~~~~~~~g~~i~~~~~~~~g~~~~~~a~~~~g~~~~dp~~i~~~~~~~~~~~~a~l~~v~a~~~tN 325 (484)
T PRK11375 246 SASDFTQNAHSFRAQALGQTLGLVVAYILFAVASVCIIAGASIHYGADTWNVLDIVQRWDSLFASFFAVLVILMTTISTN 325 (484)
T ss_pred cccchhcccCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999 899999999999999998888888999899999999998888888889999999999999
Q ss_pred hhhhhhhhHHhHhhhcCcccccchhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHhhhHhHHHHHHhhhhhhhhcCCCC
Q 009276 365 IAANVVAPANALVNLRPSIFTFRKGAILTALLGIAFQPWRLLKSSESFVYTWLVGYSALLGPIGGIILADYYLIQGAKLS 444 (538)
Q Consensus 365 i~~N~ys~~~~l~~l~pk~~~~~r~~ii~avl~~~l~pw~l~~~~~~fl~~fL~~lg~~l~P~~gI~l~Dy~liRr~~~~ 444 (538)
+..|+||+++|+++++||++++||+.+++++++++++||+++++.+.|. +||+.+|.+++|++|||++|||++||+++|
T Consensus 326 ~~~N~ys~~~~l~~l~pk~i~~~~~~~i~~iig~~~~pw~~~~~~~~f~-~FL~~lg~~l~Pi~gImi~DY~i~rr~~~~ 404 (484)
T PRK11375 326 ATGNIIPAGYQIAALAPTKLTYKNGVLIASIISLLICPWKLMENQDSIY-LFLDIIGGMLGPVIGVMMAHYFVVMRGQIN 404 (484)
T ss_pred HHhhcccHHHHHHHhCcCccchhhHHHHHHHHHHHhccHHHhccHHHHH-HHHHHHHHHHHHHHHHHHhhheeEeccEee
Confidence 7789999999999999999999999999999999999999998878887 899999999999999999999999999999
Q ss_pred cccccccCCCCcccccCCCchHHHHHHHHHHhhccccccccccccccccccchhccchhHHHHHHHHHHHHHHHhhccCC
Q 009276 445 IKYLYSLNPNGAYYYSGGYNLVAIMALSIGILPVIPGFLQKVGLVVTIPNSFVVIYNNAWFFSFFLAGFVYWVLSLLRGK 524 (538)
Q Consensus 445 ~~~Ly~~~~~g~Y~y~~G~N~~ai~A~~~G~~~~~pg~~~~~g~~~~~~~~~~~~~~~s~~~g~~vs~vvY~~l~~~~~~ 524 (538)
++|||+. +++.|||++|+||||++||++|+++++++.... .....+|++|++|+++++++|++++|..++
T Consensus 405 ~~~Ly~~-~~~~~~y~~G~N~~A~ia~iiG~~~~~~~~~~~---------~~~~l~~~~~~~g~iva~~~Y~~l~~~~~~ 474 (484)
T PRK11375 405 LDELYTA-PGDYKYYDNGFNLTAFSVTLVAVILSLGGKFIP---------FMEPLSRVSWFVGVIVAFVAYALLKKRTTA 474 (484)
T ss_pred hHHhcCC-CCCeEeecCcCcHHHHHHHHHHHHHhcchhhHH---------HHHHHhhhhHHHHHHHHHHHHHHHHhhCCC
Confidence 9999975 456778999999999999999999988752110 112247899999999999999999988665
Q ss_pred CC
Q 009276 525 QN 526 (538)
Q Consensus 525 ~~ 526 (538)
++
T Consensus 475 ~~ 476 (484)
T PRK11375 475 EK 476 (484)
T ss_pred cc
Confidence 33
No 4
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=100.00 E-value=3.3e-66 Score=557.17 Aligned_cols=401 Identities=33% Similarity=0.605 Sum_probs=337.3
Q ss_pred cCCCCCCCCCCccch----------------------hhhhccCcHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcce
Q 009276 78 NEDLKPSTINERTFS----------------------CLVDLGMAWWQGIATVVAANVILLVPLVLTGHPGTKYGIPFPV 135 (538)
Q Consensus 78 n~dl~Pip~~~Rtw~----------------------s~~~~GLs~~qal~aiiiG~~i~~~~~~l~g~~G~k~Gl~~~v 135 (538)
|+|++|+|+|||+|+ .+...|||+||+++++++|+++++++++++|++|+|||+|+++
T Consensus 1 n~~i~pvp~~~R~~~~~~~~~~W~~~~~~v~~~~~Ga~l~~~GLs~~~ailai~lG~~i~~~~~~l~~~~G~r~Gl~~~v 80 (442)
T TIGR00800 1 NEDLQPVKEEERTWSFLNYFSLWLGAAFNIATWAIGALGLPLGLSWWQSVIAIILGNLLGGIFVALNSRAGAKYGLPFPV 80 (442)
T ss_pred CCCCCCCCcccCCccHHHHHHHHHHHhhhHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHhhhhHHHhCCCcch
Confidence 789999999999987 2346789999999999999999999999999999999999999
Q ss_pred ehhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccCCCCCCCChhHHHHHHHHHHHHHHH-H
Q 009276 136 LARSSFGIKGAHIPTLLRALVGCGWYGIETWIGGEAVFLLLPKFIKQSSILSQSLPWLGTSPLEFACFIAFWLAQLAI-V 214 (538)
Q Consensus 136 ~sR~~FG~~Gs~lp~li~~i~~igW~~v~~~~gg~al~~~l~~~~~~~~~~~~~~p~~g~t~~~~i~~ii~~~l~~~~-~ 214 (538)
++|++||++|+++|+++|+++++||+++|++++|++++++++.+++...+.+++ ++...++++++++++++++ .
T Consensus 81 ~sR~~FG~~Gs~~~~~~~~i~~igW~av~~~~~g~al~~~l~~i~~~~~~~~~~-----~t~~~~~~~~i~~~l~~~~~~ 155 (442)
T TIGR00800 81 LSRASFGIYGSLLPSLLRIVMAIGWYGVQAWVGGLCVALMLDSIFPGYLHLGNG-----MTTLELICFIIFWALVLVFLF 155 (442)
T ss_pred hhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcccccccCCc-----ccHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998887653322221 3445788999999999875 5
Q ss_pred hhchhhHHHHHhhhhhHHHHHHHHHHHHHHHhcCCCcccccccccCCchhhHHHHHHHHHHHHHHHHhHhcccccccccc
Q 009276 215 WKGIEGIRELEKYSAPILIILTSSFLFWAYVNAGGFGHMLSKSSKLSSSEFWSLFFPSLTANISFWATVALNIPDFTRYA 294 (538)
Q Consensus 215 ~~G~~~i~~~~~~~~p~~~v~~i~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ai~~~ig~~~~~~~~~sDysRy~ 294 (538)
+.|++.++++++++.|...+ ++++++|.+.+.++..+..+.++..++++.++.++.++++++|++++|+++++||+||+
T Consensus 156 ~~g~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~g~~~s~~~~~~DysRy~ 234 (442)
T TIGR00800 156 FFGYKIRHLFEWLAVVPPFA-AFGMLIWALSKAHGKGPLGELTGTLHGSTGAWAFLYALSLVIGSFATWATNAPDFTRFG 234 (442)
T ss_pred cCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCCCccccCCCCCCcchhHHHHHHHHHHHHHHHHHHHcCchhhhhhc
Confidence 55666666677766666554 44555677777766555433222223345567889999999999999999999999999
Q ss_pred ccCCcchhhc-hhhhHHHHHHHHHHHHHhhhhhhhhhccccCHHHHHHHhhhhHHHH------HHHHHHHHHHHHHhhhh
Q 009276 295 KSQNDQILGQ-AGLPIFMGAFTFVGLAITCSTQVIFGRVISSPIQLLDQIGGITTRI------LGIIGISLATITTNIAA 367 (538)
Q Consensus 295 k~~~~~~~g~-~g~p~~~~~~~~~G~~~~~a~~~~~G~~~~dp~~~l~~~g~~~~~~------~~~l~i~la~i~~Ni~~ 367 (538)
|++++..+++ ++++....++.++|++.+++....+|+..|||.+.+..+++..... ++.++++++++++|...
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~a~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~f~~~~~vl~~~~t~~~~ 314 (442)
T TIGR00800 235 KSKKTAIWGQFLALPGGFTLTCFFGILGAAAAYAAYGEPYWSPLDILARFLGLTYAVGARAVFGFGFCFVVAQLSTNISA 314 (442)
T ss_pred CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCHHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999 8999999999999999988877788988999999988876533222 23356667777766689
Q ss_pred hhhhhHHhHhhhcCcccccchhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHhhhHhHHHHHHhhhhhhhhcCCCCccc
Q 009276 368 NVVAPANALVNLRPSIFTFRKGAILTALLGIAFQPWRLLKSSESFVYTWLVGYSALLGPIGGIILADYYLIQGAKLSIKY 447 (538)
Q Consensus 368 N~ys~~~~l~~l~pk~~~~~r~~ii~avl~~~l~pw~l~~~~~~fl~~fL~~lg~~l~P~~gI~l~Dy~liRr~~~~~~~ 447 (538)
|.||+++++++++||+.++||+.+++++++++++||.+.+..+.| ++||+.+|++++||+|||++|||++||+++|.+|
T Consensus 315 N~ys~~l~l~~l~~~~~~~~r~~~i~~ii~~~~~~~~~~~~~~~~-~~FL~~lg~~~~P~~gI~l~Dy~~~rr~~~~~~~ 393 (442)
T TIGR00800 315 NSYSAGLDIAALLPKYIKIKRGSLICAIIALLICPWNLYNSSSKF-TTFLSSIGGFLSPIAGVMIADYFVVRRGYLHLTT 393 (442)
T ss_pred hccchHHHHHHhCcCccccchHHHHHHHHHHHhccHHHHhchHHH-HHHHHHHHHHHHHHHHHHHhheeEEeccccChHH
Confidence 999999999999999888889888999999999999887555555 4899999999999999999999999999999999
Q ss_pred ccccCCCCccccc--CCCchHHHHHHHHHHhhccccccccc
Q 009276 448 LYSLNPNGAYYYS--GGYNLVAIMALSIGILPVIPGFLQKV 486 (538)
Q Consensus 448 Ly~~~~~g~Y~y~--~G~N~~ai~A~~~G~~~~~pg~~~~~ 486 (538)
+|+++ +|+|||. +|+||+|+++|++|+++.+|++..+.
T Consensus 394 l~~~~-~g~y~~~~~~g~n~~a~~a~~ig~~~~~p~~~~~~ 433 (442)
T TIGR00800 394 LYSDT-KGEYYPGGIKGVNWRAIVAVICGLAPCLPGFVGEV 433 (442)
T ss_pred HhcCC-CCceEeeCCCcEeHHHHHHHHHHHhcccceehhhc
Confidence 99865 8999998 89999999999999999999887544
No 5
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.
Probab=100.00 E-value=1.5e-63 Score=536.38 Aligned_cols=416 Identities=32% Similarity=0.567 Sum_probs=301.0
Q ss_pred CCCCCCccch----------------------hhhhccCcHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcceehhhh
Q 009276 83 PSTINERTFS----------------------CLVDLGMAWWQGIATVVAANVILLVPLVLTGHPGTKYGIPFPVLARSS 140 (538)
Q Consensus 83 Pip~~~Rtw~----------------------s~~~~GLs~~qal~aiiiG~~i~~~~~~l~g~~G~k~Gl~~~v~sR~~ 140 (538)
|+|+|||+|+ ..+++||++||+++++++|++++++++++++++|+|+|+|+++++|++
T Consensus 1 PVP~~~R~~~~~~~~~iW~~~~~~~~~~~~G~~~~~~gL~~~~ailai~~G~~l~~i~~~~~~~~G~r~Gl~~~v~sR~~ 80 (440)
T PF02133_consen 1 PVPESERTWSPWSLFWIWFGANISIATFVTGALGVALGLSFWQAILAILIGNLLGAILVALMGIIGPRTGLPTMVLSRAS 80 (440)
T ss_dssp ----GG--B-HHHHHHHHCHHH-SCHHH-HHHHHHCCCS-HHHHHHHHHHHHHHHHHHHHHHTHHHHCC---HHHHTTTT
T ss_pred CCchhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHhcccccccCCCchhcchhc
Confidence 8999999987 125789999999999999999999999999999999999999999999
Q ss_pred hccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccCCCCCCCChhHHHHHHHHHHHHHHHHhhchhh
Q 009276 141 FGIKGAHIPTLLRALVGCGWYGIETWIGGEAVFLLLPKFIKQSSILSQSLPWLGTSPLEFACFIAFWLAQLAIVWKGIEG 220 (538)
Q Consensus 141 FG~~Gs~lp~li~~i~~igW~~v~~~~gg~al~~~l~~~~~~~~~~~~~~p~~g~t~~~~i~~ii~~~l~~~~~~~G~~~ 220 (538)
||++|+++|+++|.++.+||+++|++++|++++.+++..+|.+...++.. .+.....+++++++++++....++|++.
T Consensus 81 FG~~Gs~l~~~l~~i~~igW~av~~~~~g~al~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~g~~~ 158 (440)
T PF02133_consen 81 FGYRGSKLPSLLRAISAIGWFAVNTWLGGQALAALLGIIFGSFLWIGNAI--IGIALPLWVCFFIFWLIQTLFAIYGMKA 158 (440)
T ss_dssp S-TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----HH-------------HHHHHHHHHHHHHHCTHHHH
T ss_pred cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcchhhhhhh--hcchhhHHHHHHHHHHHHHHHHhcCHHH
Confidence 99999999999999999999999999999999999887766433333211 2334456789999999999999999999
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHhcCCCcccccccccCCchhhHHHHHHHHHHHHHHHHhHhccccccccccccCCcc
Q 009276 221 IRELEKYSAPILIILTSSFLFWAYVNAGGFGHMLSKSSKLSSSEFWSLFFPSLTANISFWATVALNIPDFTRYAKSQNDQ 300 (538)
Q Consensus 221 i~~~~~~~~p~~~v~~i~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ai~~~ig~~~~~~~~~sDysRy~k~~~~~ 300 (538)
+++++++..|++.++++.+.+|...+.++ ++..+.+...+..+ .+..+++..++.|++++++++||+||+|++++.
T Consensus 159 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~~~DysRy~~~~~~~ 234 (440)
T PF02133_consen 159 LRRLAVIAAPILLVVFIGMLIWALSKAGG-GPLLSAPASPSPSG---SFLAAIALVIGSWISWAPNASDYSRYAKSDTSA 234 (440)
T ss_dssp HHHHHHCCHHHHHHHHHHHHHHHHHHCT--HHHCCS--S----S----HHHHHHHHHCCCHHHHCCCHHHHTTC--HHHH
T ss_pred HHhHHhhhhHHHHhhhhheeEEEeecCCc-chhhhCcccchhHH---HHHHHHHHHHhhhhhhhhccccHHhhCCCCCCc
Confidence 99999999999988888888888877665 55444322211111 466788888999999999999999999999998
Q ss_pred hhhc-hhhhHHHHHHHHHHHHHhhhhhhhhhccccCHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhHHhHhhh
Q 009276 301 ILGQ-AGLPIFMGAFTFVGLAITCSTQVIFGRVISSPIQLLDQIGGITTRILGIIGISLATITTNIAANVVAPANALVNL 379 (538)
Q Consensus 301 ~~g~-~g~p~~~~~~~~~G~~~~~a~~~~~G~~~~dp~~~l~~~g~~~~~~~~~l~i~la~i~~Ni~~N~ys~~~~l~~l 379 (538)
.+.+ ++++.....+.++|++.+.+.....++..|||.+++.++++..+.++..+.+++++..+|...|.||++++++++
T Consensus 235 ~~~~~~~~~~~~~~~~~~g~lg~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~i~~~~~~~~~~~n~ys~~~~l~~~ 314 (440)
T PF02133_consen 235 WWGFWLGFPGGFIPFVLVGILGAAAGGIADGEPIWDPLQILGAFLPPFGGFFPALLILFASIWTNNAANLYSAGLALQNI 314 (440)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHTS--HHHHHHHHH-HHHHHHHTTHHHHHTHHHHHHHHCC
T ss_pred EEEEeehhhhHHHHHHHHHHHHHHHHHHhcCcccccHHHHHHHhcchhHHHHHHHHHHHHHHHHhhhhhHhhHHHHHHHc
Confidence 8888 788887777888888777666666777788999888877766344445555666666666579999999999999
Q ss_pred cCcccccchhHHHHHHHHHHHHHHHhhhcchh-HHHHHHHHHhhhHhHHHHHHhhhhhhhhcCCCCcccccccCCCCccc
Q 009276 380 RPSIFTFRKGAILTALLGIAFQPWRLLKSSES-FVYTWLVGYSALLGPIGGIILADYYLIQGAKLSIKYLYSLNPNGAYY 458 (538)
Q Consensus 380 ~pk~~~~~r~~ii~avl~~~l~pw~l~~~~~~-fl~~fL~~lg~~l~P~~gI~l~Dy~liRr~~~~~~~Ly~~~~~g~Y~ 458 (538)
+||++++||..+++++++++.++|.++++.+. |. +||+.+|++++||+||+++|||++||+|+|.+|+|+++++|+||
T Consensus 315 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~f~-~fL~~lg~~~~P~~gI~i~Dy~i~r~~~~~~~~~~~~~~~~~Y~ 393 (440)
T PF02133_consen 315 FPKRISRRRGVIIVGVIGIAIAPWGLLGNFSFLFT-NFLSLLGYFLGPWAGIMIADYFIVRRRRYDVDDLYDRRPGGPYW 393 (440)
T ss_dssp STTT--HHHHHHHHHHHHHCT-GGGTCCCCHC-----HCCCCCHTTHHHHHHHHHHHHTTTTT---HHHHTB--SSSTT-
T ss_pred cceeecchHHHHHHHHHHHHHHHHHHHhchhhhHH-HHHHHHHHhchhHHHHHHHHHHHHHhhhccHHHHHhcCCCCCCC
Confidence 99778999999999999999999988887776 55 89999999999999999999999999999999999988899999
Q ss_pred ccCCCchHHHHHHHHHHhhccccccccccccccccccchhccchhHHHH
Q 009276 459 YSGGYNLVAIMALSIGILPVIPGFLQKVGLVVTIPNSFVVIYNNAWFFS 507 (538)
Q Consensus 459 y~~G~N~~ai~A~~~G~~~~~pg~~~~~g~~~~~~~~~~~~~~~s~~~g 507 (538)
|++|+||+|+++|++|++++++++..++. ...++...+.+|++|++|
T Consensus 394 y~~g~n~~a~~a~~~G~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~vG 440 (440)
T PF02133_consen 394 YWGGWNWAALVAWVAGAAVGLLFMNGAVY--IGPIAGAMGGADLSWFVG 440 (440)
T ss_dssp CCTTB-HHHHHHHHHHHHCCCT-GGGH----------------------
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHhcccc--ccccccccccccccccCC
Confidence 99999999999999999999998876543 123345567889999876
No 6
>PRK11017 codB cytosine permease; Provisional
Probab=100.00 E-value=1.2e-58 Score=492.42 Aligned_cols=379 Identities=21% Similarity=0.316 Sum_probs=315.7
Q ss_pred CCCCCCCCccch--------------------hhhhccCcHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcceehhhh
Q 009276 81 LKPSTINERTFS--------------------CLVDLGMAWWQGIATVVAANVILLVPLVLTGHPGTKYGIPFPVLARSS 140 (538)
Q Consensus 81 l~Pip~~~Rtw~--------------------s~~~~GLs~~qal~aiiiG~~i~~~~~~l~g~~G~k~Gl~~~v~sR~~ 140 (538)
+||+|+|||+.. +.+++|||+||+++++++|+++++++++++|++|+|||+|+++++|++
T Consensus 1 ~~pvp~~~r~~~~~~~~~~~g~~~~~~~~~~g~~l~~GLs~~~ai~aiilG~~i~~~~~~l~~~~G~k~G~~~~v~sR~~ 80 (404)
T PRK11017 1 LSPVPQSARKGVLSLTMVMLGFTFFSASMWAGGTLGTGLSFVDFLLAVLIGNLLLGIYTAALGYIGAKTGLSTHLLARFS 80 (404)
T ss_pred CCCCCHHHhcchHhHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCHHHHHHHH
Confidence 589999999822 457889999999999999999999999999999999999999999999
Q ss_pred hccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccCCCCCCCChhHHHHHHHHHHHHHHHHhhchhh
Q 009276 141 FGIKGAHIPTLLRALVGCGWYGIETWIGGEAVFLLLPKFIKQSSILSQSLPWLGTSPLEFACFIAFWLAQLAIVWKGIEG 220 (538)
Q Consensus 141 FG~~Gs~lp~li~~i~~igW~~v~~~~gg~al~~~l~~~~~~~~~~~~~~p~~g~t~~~~i~~ii~~~l~~~~~~~G~~~ 220 (538)
||++|+++|+++|.++++||+++|+++++.+++.+++ .+ ...+++++++++++.+++|+|.
T Consensus 81 FG~~Gs~l~~~~~~i~~igW~av~~~~~~~~l~~~~~-----------------~~--~~~~~~i~~~l~~~~~~~G~~~ 141 (404)
T PRK11017 81 FGEKGSWLPSLLLGFTQVGWFGVGVAMFAIPVVKATG-----------------LD--INLLIVLSGLLMTVTAYFGISA 141 (404)
T ss_pred hchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC-----------------CC--HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999987765431 11 1236788999999999999999
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHhcCCCcccccccccCCchhhHHHHHHHHHHHHHHHHhHhccccccccccccCCcc
Q 009276 221 IRELEKYSAPILIILTSSFLFWAYVNAGGFGHMLSKSSKLSSSEFWSLFFPSLTANISFWATVALNIPDFTRYAKSQNDQ 300 (538)
Q Consensus 221 i~~~~~~~~p~~~v~~i~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ai~~~ig~~~~~~~~~sDysRy~k~~~~~ 300 (538)
++|+++++.|++.++++.+.+|.+.+.||.++..+.++. + ...++.+++.++|++++|++|+|||+||+|++|++
T Consensus 142 i~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----~-~~~~~~a~~~~~g~~~~~~~~~~DysRy~k~~~~~ 216 (404)
T PRK11017 142 LTILSRIAVPAIALLGGYSVWLAVNDVGGLDGLKAIVPA----E-PLDFSAALTLVVGSFISGGTLTADFVRFGRSAKIA 216 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhcCCCC----C-cccHHHHHHHHHHHHHHhHhcCCChHhhccCccce
Confidence 999999999999888877777777777776655433221 1 23577889999999999999999999999999999
Q ss_pred hhhc-hhhhHHHHHHHHHHHHHhhhhhhhhhccccCHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhHHhHhhh
Q 009276 301 ILGQ-AGLPIFMGAFTFVGLAITCSTQVIFGRVISSPIQLLDQIGGITTRILGIIGISLATITTNIAANVVAPANALVNL 379 (538)
Q Consensus 301 ~~g~-~g~p~~~~~~~~~G~~~~~a~~~~~G~~~~dp~~~l~~~g~~~~~~~~~l~i~la~i~~Ni~~N~ys~~~~l~~l 379 (538)
.+++ +|+++...++.++|++.+.+ .|+ .|+.+.+...+. ..++++.+.++++++| ..|.|+++++++++
T Consensus 217 ~~~~~lg~~i~~~~~~~~G~~~a~~----~~~--~d~~~~~~~~~~---~~~~l~~~~l~~~t~n-~~~~ys~~l~~~~l 286 (404)
T PRK11017 217 VLATMVAFFLGNSLMFIFGAAGAAV----YGQ--ADISDVMIAQGL---LIPAIVMLGLNIWTTN-DNALYASGLGFCNI 286 (404)
T ss_pred eehhHHHHHHHHHHHHHHHHHHHHH----cCC--ccHHHHHHHhch---HHHHHHHHHHHHHHhh-HHHHHHHHHHHHHH
Confidence 9999 89999999999999877654 344 577777654332 2346677889999999 58999999999999
Q ss_pred cCcccccchhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHhhhHhHHHHHHhhhhhhhhcCCCCcccccccCCCCcccc
Q 009276 380 RPSIFTFRKGAILTALLGIAFQPWRLLKSSESFVYTWLVGYSALLGPIGGIILADYYLIQGAKLSIKYLYSLNPNGAYYY 459 (538)
Q Consensus 380 ~pk~~~~~r~~ii~avl~~~l~pw~l~~~~~~fl~~fL~~lg~~l~P~~gI~l~Dy~liRr~~~~~~~Ly~~~~~g~Y~y 459 (538)
. | ++.|+..+++++++++++|| ++++ |. +||+.+|++++||+|||++|||++||++||. ++ +++|
T Consensus 287 ~-~-~~~~~~~ii~~vi~~~i~~~-~~~~---~~-~FL~~lg~~l~P~~gI~i~Dy~l~rr~~~~~--~~----~~~~-- 351 (404)
T PRK11017 287 T-R-LSSRTLTVVNGIIGTVLALW-LYNN---FV-GWLTLLGSAIPPVGGVIIADYFMNRRGRYPD--FA----TARL-- 351 (404)
T ss_pred h-c-CcchHHHHHHHHHHHHHHHH-HHHH---HH-HHHHHHHHHhhhhHhhhhhheeeeeccCccc--hh----hccc--
Confidence 7 3 46778888999999999999 6554 43 6888999999999999999999999999874 22 2333
Q ss_pred cCCCchHHHHHHHHHHhhccccccccccccccccccchhccchhHHHHHHHHHHHHHHHhhccCCCCC
Q 009276 460 SGGYNLVAIMALSIGILPVIPGFLQKVGLVVTIPNSFVVIYNNAWFFSFFLAGFVYWVLSLLRGKQNS 527 (538)
Q Consensus 460 ~~G~N~~ai~A~~~G~~~~~pg~~~~~g~~~~~~~~~~~~~~~s~~~g~~vs~vvY~~l~~~~~~~~~ 527 (538)
+|+||+|++||++|+++++. + .|+++++|+++++++|++++|..+++.+
T Consensus 352 -~g~N~~a~~a~~ig~~~~~~-----------~-------~~~~~~~g~i~~~~~Y~~l~~~~~~~~~ 400 (404)
T PRK11017 352 -PRVNWAAILAVALGAAAGHF-----------L-------PGIVPVNAVLGGALSYIVLNPLLNRKTA 400 (404)
T ss_pred -cCcCHHHHHHHHHHHHHHHH-----------h-------CCchHHHHHHHHHHHHHHHHHHhccccc
Confidence 79999999999999998642 1 1457899999999999999998766444
No 7
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=100.00 E-value=1e-53 Score=452.00 Aligned_cols=360 Identities=23% Similarity=0.326 Sum_probs=297.9
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcceehhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 009276 99 MAWWQGIATVVAANVILLVPLVLTGHPGTKYGIPFPVLARSSFGIKGAHIPTLLRALVGCGWYGIETWIGGEAVFLLLPK 178 (538)
Q Consensus 99 Ls~~qal~aiiiG~~i~~~~~~l~g~~G~k~Gl~~~v~sR~~FG~~Gs~lp~li~~i~~igW~~v~~~~gg~al~~~l~~ 178 (538)
|++||+++++++|+++++++++++|++|+|+|+|+++++|++||+||+++|+++|.++++||+++|++++|++++.+++.
T Consensus 26 L~~~~ai~aiilG~~i~~~~~~l~~~~G~~~Gl~~~v~sR~~FG~~Gs~~~~~l~~i~~igW~~v~~~~gg~~l~~~~~~ 105 (386)
T TIGR02358 26 LGLTRGLLAILLGHLVGVLLLSAAGVIGADTGLSAMGSLKLSLGSKGSVLPSLLNLLQLVGWTAVMIIVGAKAASLLGGR 105 (386)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcCHHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred hhhcccccccCCCCCCCChhHHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHHHHHHHHHHHHHHHhcCCCcccccccc
Q 009276 179 FIKQSSILSQSLPWLGTSPLEFACFIAFWLAQLAIVWKGIEGIRELEKYSAPILIILTSSFLFWAYVNAGGFGHMLSKSS 258 (538)
Q Consensus 179 ~~~~~~~~~~~~p~~g~t~~~~i~~ii~~~l~~~~~~~G~~~i~~~~~~~~p~~~v~~i~l~~~~~~~~~g~~~~~~~~~ 258 (538)
.++.. + ...+++++++++++++++|+|.+|++++++.|++.++++++.+|.+.+.+ .++..+.++
T Consensus 106 ~~~~~------------~--~~~~~~i~~~l~~~~~~~G~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~ 170 (386)
T TIGR02358 106 LFGEE------------S--PMLWILIVGILVTLWLLSGPLAFVWLNNWSVWLLLIATLWLLVVVFSKAD-LSELWNRAG 170 (386)
T ss_pred hcCCC------------c--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-hhhhcCCCC
Confidence 55431 1 24566778889999999999999999999999999988887777776654 233332111
Q ss_pred cCCchhhHHHHHHHHHHHHHHHHhHhccccccccccccCCcchhhc-hhhhHHHHHHHHHHHHHhhhhhhhhhccccCHH
Q 009276 259 KLSSSEFWSLFFPSLTANISFWATVALNIPDFTRYAKSQNDQILGQ-AGLPIFMGAFTFVGLAITCSTQVIFGRVISSPI 337 (538)
Q Consensus 259 ~~~~~~~~~~~~~ai~~~ig~~~~~~~~~sDysRy~k~~~~~~~g~-~g~p~~~~~~~~~G~~~~~a~~~~~G~~~~dp~ 337 (538)
+ ..+..+++.+++++++|++.++||+||+|++|+..+++ +|+++...++.++|++.+++.. + +||.
T Consensus 171 -----~--~s~~~~~~~~~~~~~swa~~~~DysRy~k~~~~~~~~~~~G~~i~~~~~~~~G~~~~~a~~----~--~d~~ 237 (386)
T TIGR02358 171 -----D--MSFAVAVELVIAMPLSWLPLIADYTRFARNPRHVFLGTVLGYFIGSCWMYFLGLAVTLATG----Q--TDII 237 (386)
T ss_pred -----C--ccHHHHHHHHHHHHHHHHHHccchhhhcCCCcceehHHHHHHHHHHHHHHHHHHHHHHhcC----C--CCHH
Confidence 1 23556778888988999999999999999999999999 8999999999999999887653 3 5999
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhHHhHhhhcCcccccchhHHHHHHHHHHHHHHHhhhcchhHHHHHH
Q 009276 338 QLLDQIGGITTRILGIIGISLATITTNIAANVVAPANALVNLRPSIFTFRKGAILTALLGIAFQPWRLLKSSESFVYTWL 417 (538)
Q Consensus 338 ~~l~~~g~~~~~~~~~l~i~la~i~~Ni~~N~ys~~~~l~~l~pk~~~~~r~~ii~avl~~~l~pw~l~~~~~~fl~~fL 417 (538)
+++.+.+. .+++++.++++++++| ..|.||+++|+++++||+ +.||..++++++++++++|... +.|. +||
T Consensus 238 ~~~~~~g~---~~~~~~~~~l~~~~~n-~~N~ys~~l~l~~l~~~~-~~~~~~~i~~ii~~~l~~~~~~---~~f~-~FL 308 (386)
T TIGR02358 238 SILAGAGL---GIPALLIILLSTVTTT-FMDIYSAAISTGNLLPRL-KVKHLAIGVGVLGTLIALLFPV---DKYE-NFL 308 (386)
T ss_pred HHHHhccH---HHHHHHHHHHhHHHHH-HHHHHHHHHHHHHHHHhh-cchHHHHHHHHHHHHHHHHHHH---HHHH-HHH
Confidence 98877654 2466788899999999 699999999999999986 5677778888999888776543 4455 799
Q ss_pred HHHhhhHhHHHHHHhhhhhhhhcCCCCcccccccCCCCcccccCCCchHHHHHHHHHHhhccccccccccccccccccch
Q 009276 418 VGYSALLGPIGGIILADYYLIQGAKLSIKYLYSLNPNGAYYYSGGYNLVAIMALSIGILPVIPGFLQKVGLVVTIPNSFV 497 (538)
Q Consensus 418 ~~lg~~l~P~~gI~l~Dy~liRr~~~~~~~Ly~~~~~g~Y~y~~G~N~~ai~A~~~G~~~~~pg~~~~~g~~~~~~~~~~ 497 (538)
+.+|++++|++||+++|||++||+|| ++|+||+|++||++|++++... ...+. +.+ .
T Consensus 309 ~~lg~~~~P~~gI~i~Dy~l~rr~~~----------------~~g~N~~a~~a~~ig~~~~~~~--~~~~~----~~~-~ 365 (386)
T TIGR02358 309 LLIGSVFAPLYAVVFVDFFVVKRRRL----------------SGYLNFQALVSWIIGFILYHAL--IAAGA----PEL-K 365 (386)
T ss_pred HHHHHHHHHHHHHHHHHHheeecccc----------------cCCCcHHHHHHHHHHHHHHHHH--HhcCC----chh-h
Confidence 99999999999999999999999876 1699999999999999987421 11111 100 0
Q ss_pred hccchhHHHHHHHHHHHHHHHh
Q 009276 498 VIYNNAWFFSFFLAGFVYWVLS 519 (538)
Q Consensus 498 ~~~~~s~~~g~~vs~vvY~~l~ 519 (538)
-+--+.++.+++++.+|+++.
T Consensus 366 -~~~~~~~~~~~~~~~~~~~~~ 386 (386)
T TIGR02358 366 -WLLGATIPAVLLAGVIYGLLS 386 (386)
T ss_pred -hhccchHHHHHHHHHHHHhcC
Confidence 012356799999999999873
No 8
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=100.00 E-value=5.6e-52 Score=435.50 Aligned_cols=397 Identities=21% Similarity=0.367 Sum_probs=314.7
Q ss_pred CCCCCCCCCccch--------------------hhhhccCcHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcceehhh
Q 009276 80 DLKPSTINERTFS--------------------CLVDLGMAWWQGIATVVAANVILLVPLVLTGHPGTKYGIPFPVLARS 139 (538)
Q Consensus 80 dl~Pip~~~Rtw~--------------------s~~~~GLs~~qal~aiiiG~~i~~~~~~l~g~~G~k~Gl~~~v~sR~ 139 (538)
..+|+|+++|+.. .+...+|+++|+++++++|++++++++++++.+|+|+|+|+++++|.
T Consensus 10 ~~~~vp~~~r~~~~~~~~vWfga~~~ias~~~G~ll~~~L~~~~si~aillG~llG~i~~A~~s~~Ga~~Glpqmi~sR~ 89 (442)
T COG1457 10 SIEPVPEESRKGWLNLFLVWFGANFTIASMVTGGLLVPGLSFGQSLLAILLGNLLGGIFMAYFSYQGARTGLPQMILSRY 89 (442)
T ss_pred CCCCCChhhhhcchhHHHHHHHhHhHHHHHHHhccccccccHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChheeecc
Confidence 5899999999744 23445699999999999999999999999999999999999999999
Q ss_pred hhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccCCCCCCCChhHHHHHHHHHHHHHHHHhhchh
Q 009276 140 SFGIKGAHIPTLLRALVGCGWYGIETWIGGEAVFLLLPKFIKQSSILSQSLPWLGTSPLEFACFIAFWLAQLAIVWKGIE 219 (538)
Q Consensus 140 ~FG~~Gs~lp~li~~i~~igW~~v~~~~gg~al~~~l~~~~~~~~~~~~~~p~~g~t~~~~i~~ii~~~l~~~~~~~G~~ 219 (538)
+||.+|+++|++++.++++||+++|++++|++.... + +. +.+++++++.++++.++++|+|
T Consensus 90 ~fG~~Gs~l~sll~~~~~iGW~~v~~~l~~~a~~~~-----~------------~~--~~~~~ili~g~l~~l~~ifG~r 150 (442)
T COG1457 90 PFGVKGSILPSLLNGITLIGWFGVNVILSGIAIGSG-----T------------GL--PVWAGILIIGVLMTLVTIFGYR 150 (442)
T ss_pred cccchhHHHHHHHHHHHHhhHHHHHHHHhccccccC-----C------------CC--cHHHHHHHHHHHHHHHHHHhHH
Confidence 999999999999999999999999999999983211 0 11 2567888899999999999999
Q ss_pred hHHHHHhhhhhHHHHHHHHHHHHHHHhcCCCcccccccccCCchhhHHHHHHHHHHHHHHHHhHhccccccccccccCC-
Q 009276 220 GIRELEKYSAPILIILTSSFLFWAYVNAGGFGHMLSKSSKLSSSEFWSLFFPSLTANISFWATVALNIPDFTRYAKSQN- 298 (538)
Q Consensus 220 ~i~~~~~~~~p~~~v~~i~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ai~~~ig~~~~~~~~~sDysRy~k~~~- 298 (538)
.++++||+++|++.++++++........++.......+ ...+..|+.++++++|+.++|++.++||+||+|++|
T Consensus 151 ~l~~l~~~a~~~~~~lf~~l~~~~~~~~~~~~~~~~~~-----~~~~~~fl~a~slv~g~~~sw~~~~aDysRy~~~~t~ 225 (442)
T COG1457 151 ALHKLERIAVPLLLLLFLYLLALLFRSKGGLDALWVKG-----PTSPLSFLSALSLVIGSFASWGPYAADYSRYAPSPTP 225 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccceeeccC-----CCcchhHHHHHHHHHHHHHhhhhhhhhhhhhcCCCch
Confidence 99999999999999888776544443344333322211 233567889999999999999999999999999999
Q ss_pred -cchhhc-hhhhHHHHHHHHHHHHHhhhhhhhhhccccC-HHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhHHh
Q 009276 299 -DQILGQ-AGLPIFMGAFTFVGLAITCSTQVIFGRVISS-PIQLLDQIGGITTRILGIIGISLATITTNIAANVVAPANA 375 (538)
Q Consensus 299 -~~~~g~-~g~p~~~~~~~~~G~~~~~a~~~~~G~~~~d-p~~~l~~~g~~~~~~~~~l~i~la~i~~Ni~~N~ys~~~~ 375 (538)
+..+.. +|.-+...++..+|++.+.+.. + +| +.+.+..+|+ ...++++.+.+++++|| ..|+||++++
T Consensus 226 ~~~~~~~~~G~~l~~~~~~ilGa~~a~a~g----~--~~~~~~~~~~~G~--~g~~~~lil~l~~~ttN-~~nlYsa~ls 296 (442)
T COG1457 226 SKAFLAAVLGFFLGTSFMMILGAALAAAAG----N--ADSIADVMLGLGG--FGLPAILILVLGTVTTN-ANNLYSAGLS 296 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----C--CchHHHHHHhccc--HHHHHHHHHHHHHHhcC-cHHHHHHHHH
Confidence 777777 7888888899999999887753 3 56 6777777775 35678899999999999 6999999999
Q ss_pred HhhhcCcccccchhHHHHHH-HHHHHHHHHhhhcchhHHHHHHHHHhhhHhHHHHHHhhhhhhhhcCC--CCcccccccC
Q 009276 376 LVNLRPSIFTFRKGAILTAL-LGIAFQPWRLLKSSESFVYTWLVGYSALLGPIGGIILADYYLIQGAK--LSIKYLYSLN 452 (538)
Q Consensus 376 l~~l~pk~~~~~r~~ii~av-l~~~l~pw~l~~~~~~fl~~fL~~lg~~l~P~~gI~l~Dy~liRr~~--~~~~~Ly~~~ 452 (538)
++++++|.-+++| .++.++ +|++++.+... +.++..+||.+++++++||.||+++|||++||+. ++.+|.+
T Consensus 297 ~~~i~~~l~k~~~-~v~~~v~igt~la~~~~~--f~~~f~~Fl~~i~~~i~P~~~I~iad~~~~rr~~~~~~~~~~~--- 370 (442)
T COG1457 297 FANIIPKLSKVTR-VVIAGVGIGTLLALAGPF--FYNFFENFLLLLGYFIPPWGGVMIADYFIVRRRYSAYNIDDWE--- 370 (442)
T ss_pred HHHhhhhhhhHHH-HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccc---
Confidence 9999998544444 445555 88888776632 2223337888999999999999999999888773 3444332
Q ss_pred CCCcccccCCCchHHHHHHHHHHhhc---ccccccc--ccccccccccchhccchhHHHHHHHHHHHHHHHhhccCCCCC
Q 009276 453 PNGAYYYSGGYNLVAIMALSIGILPV---IPGFLQK--VGLVVTIPNSFVVIYNNAWFFSFFLAGFVYWVLSLLRGKQNS 527 (538)
Q Consensus 453 ~~g~Y~y~~G~N~~ai~A~~~G~~~~---~pg~~~~--~g~~~~~~~~~~~~~~~s~~~g~~vs~vvY~~l~~~~~~~~~ 527 (538)
+++|+++..+|++|.+++ .+++++. .++..+. .+..+.+++.++++..++|++++|.+.++|.
T Consensus 371 --------~~~~~~g~~aw~~~~iv~~~~~~~~~~~~~vg~~~~~----~g~~~~g~i~~~l~~~~l~~~~~~~~~~~~~ 438 (442)
T COG1457 371 --------KGENLPGGVAWIAGLIVGLGVALGMAIGYWVGPLSPL----NGVLGIGFISGLLVMAVLYYVLAKLRALEEA 438 (442)
T ss_pred --------ccccccchHHHHHHHHHHHHhhhhhhhhhccchHHHh----cCccchhhHHHHHHHHHHHHHhccccccccc
Confidence 579999999999999988 4455442 1322211 2345668999999999999999988776543
No 9
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=97.96 E-value=0.003 Score=67.51 Aligned_cols=131 Identities=15% Similarity=0.032 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhcc------ccccc-CCCcceehhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009276 103 QGIATVVAANVILLVPLVLTGH------PGTKY-GIPFPVLARSSFGIKGAHIPTLLRALVGCGWYGIETWIGGEAVFLL 175 (538)
Q Consensus 103 qal~aiiiG~~i~~~~~~l~g~------~G~k~-Gl~~~v~sR~~FG~~Gs~lp~li~~i~~igW~~v~~~~gg~al~~~ 175 (538)
+++++.+++.+++..++.+.++ ...++ +-+....+|..||.++.++-+++..+.............++.+...
T Consensus 31 ~G~i~~li~~l~~~pl~~~~~~ll~~~~l~~~~p~~~i~~~~~~~fGk~~G~ii~~lY~~~~~~i~~aY~~~~~~~~~~f 110 (397)
T TIGR00814 31 GGLWVLVLMAIIAYPLTYFGHRALARFLLSSKNPCEDITEVVEEHFGKNWGILITLLYFFAIYPILLIYSVAITNDSASF 110 (397)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555 56676 8999999999999999988888777766555444443334444333
Q ss_pred hhhhhhcccccccCCCCCCCChhHHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHHHHHHHHHHHHHHH
Q 009276 176 LPKFIKQSSILSQSLPWLGTSPLEFACFIAFWLAQLAIVWKGIEGIRELEKYSAPILIILTSSFLFWAYV 245 (538)
Q Consensus 176 l~~~~~~~~~~~~~~p~~g~t~~~~i~~ii~~~l~~~~~~~G~~~i~~~~~~~~p~~~v~~i~l~~~~~~ 245 (538)
+..... . . ++..++..+++.++...+...|.|.+.|+..+..+.+++.++.+..+..-
T Consensus 111 l~~~~~----~-------~-~p~~~i~~lilv~il~~iv~~G~~~i~r~~~il~~~~ii~l~~l~~~lip 168 (397)
T TIGR00814 111 LVNQLG----T-------A-PPLRGLLSLALILILVAIMSFGEKLLFKIMGPLVFPLVLILVLLSLYLIP 168 (397)
T ss_pred HHHhcC----C-------C-CcHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 322110 0 1 11233333344444456677899999999999997776666655555543
No 10
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=97.94 E-value=0.046 Score=59.82 Aligned_cols=119 Identities=13% Similarity=-0.041 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccccccCC-C--cceehhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 009276 103 QGIATVVAANVILLVPLVLTGHPGTKYGI-P--FPVLARSSFGIKGAHIPTLLRALVGCGWYGIETWIGGEAVFLLLPKF 179 (538)
Q Consensus 103 qal~aiiiG~~i~~~~~~l~g~~G~k~Gl-~--~~v~sR~~FG~~Gs~lp~li~~i~~igW~~v~~~~gg~al~~~l~~~ 179 (538)
.++++-+++.++..+.....+..+.++-- + .....|..||.+-+.+-....++..+............ .+...
T Consensus 42 ~~~~~wli~~~~~~~~al~~aEl~s~~P~~sGG~y~y~~~~~G~~~gf~~gw~~~~~~~~~~~~~~~~~~~----~l~~~ 117 (473)
T TIGR00905 42 AVIIGWIITGVGMLALAFVFAILATKKPELDGGIYAYAREGFGPYIGFMSGWGYWLSAWIGNVAYAVLLFS----ALGYF 117 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhhHHhHcccccHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH
Confidence 34555566655544444445566655544 3 56677999998877776665544333222222212112 22222
Q ss_pred hhcccccccCCCCCCCChhHHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHHH
Q 009276 180 IKQSSILSQSLPWLGTSPLEFACFIAFWLAQLAIVWKGIEGIRELEKYSAPILI 233 (538)
Q Consensus 180 ~~~~~~~~~~~p~~g~t~~~~i~~ii~~~l~~~~~~~G~~~i~~~~~~~~p~~~ 233 (538)
+|... + +.....++..+++.++...+..+|.|...|++.+...+.+
T Consensus 118 ~p~~~---~-----~~~~~~~~~~~~~~~~~~~ln~~Gi~~~~~i~~~~~~~~l 163 (473)
T TIGR00905 118 FPLFG---S-----GNPVPSILGASVLLWVFTFLVLRGVRQAAFINTITTIAKL 163 (473)
T ss_pred hhhhc---C-----CCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 33110 0 0111123333343444566788899999999998775533
No 11
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=97.90 E-value=0.0038 Score=65.75 Aligned_cols=74 Identities=19% Similarity=0.069 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccccccCCCcceehhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009276 102 WQGIATVVAANVILLVPLVLTGHPGTKYGIPFPVLARSSFGIKGAHIPTLLRALVGCGWYGIETWIGGEAVFLL 175 (538)
Q Consensus 102 ~qal~aiiiG~~i~~~~~~l~g~~G~k~Gl~~~v~sR~~FG~~Gs~lp~li~~i~~igW~~v~~~~gg~al~~~ 175 (538)
++-++.+++++++...+.-..+|.|..+|-+.....|..+|.+=.++-.+.-.+..+.+..-|..-.+.+++.+
T Consensus 13 y~Llw~lll~~~~~~~~q~~~~R~~~~Tg~~l~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~g~a~al~ll 86 (358)
T PF01566_consen 13 YSLLWVLLLSNLLKYVFQEMAARLGIVTGKGLAEGIRERFGRGWAWFLWILIFLANIATQAAEIIGIAIALNLL 86 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35578888999999999999999999999999999999998876666666666777777777765555555443
No 12
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=97.84 E-value=0.03 Score=59.89 Aligned_cols=187 Identities=16% Similarity=0.200 Sum_probs=107.9
Q ss_pred ccCcHHHHHHHHHHHHHHHHHHHHhhccc--ccccCCCcceehhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009276 97 LGMAWWQGIATVVAANVILLVPLVLTGHP--GTKYGIPFPVLARSSFGIKGAHIPTLLRALVGCGWYGIETWIGGEAVFL 174 (538)
Q Consensus 97 ~GLs~~qal~aiiiG~~i~~~~~~l~g~~--G~k~Gl~~~v~sR~~FG~~Gs~lp~li~~i~~igW~~v~~~~gg~al~~ 174 (538)
-+.+++.+++.+++.-.+...-.-+.... ..+.+.++.-++|..+|.+|..+-.+...+..-.....-..-+|+.+..
T Consensus 29 ~~~Gf~~~~~~l~~~w~~~~~s~l~~~E~~~~~~~~~~~~~~a~~~lG~~g~~~~~~~~~~~~y~ll~AYisg~g~~~~~ 108 (394)
T PF03222_consen 29 AGAGFLPSLILLLIAWPLMYYSGLLLAEVSLNTPEGSSLTSMAEKYLGKKGGIVIGISYLFLLYALLVAYISGGGSILSS 108 (394)
T ss_pred HhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHccHHHHHH
Confidence 35666666666665554443322222222 3455999999999999999999888777766655555444445555555
Q ss_pred HhhhhhhcccccccCCCCCCCChhHHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHHHHHHHHHHHHHHHhcCCCcccc
Q 009276 175 LLPKFIKQSSILSQSLPWLGTSPLEFACFIAFWLAQLAIVWKGIEGIRELEKYSAPILIILTSSFLFWAYVNAGGFGHML 254 (538)
Q Consensus 175 ~l~~~~~~~~~~~~~~p~~g~t~~~~i~~ii~~~l~~~~~~~G~~~i~~~~~~~~p~~~v~~i~l~~~~~~~~~g~~~~~ 254 (538)
.+.... +.+...+...+++.++...+.+.|.+.+.|.+++....+++.++.+..+..-+.+. ..+.
T Consensus 109 ~l~~~~-------------~~~~~~~~~~~~f~~i~~~iv~~g~~~v~~~n~~lv~~~i~~~~~l~~~~~p~~~~-~~L~ 174 (394)
T PF03222_consen 109 LLGNQL-------------GTDLSPWLSSLLFTIIFGGIVYFGTKAVDRINRVLVFGMIISFIILVVYLIPHWNP-SNLL 174 (394)
T ss_pred HHHHhc-------------CCCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCH-HHhh
Confidence 443211 11112345555666666677789999999999999887777766665555433221 1111
Q ss_pred cccccCCchhhHHHHHHHHHHHHHHHHhHhccccccccccccCCcch
Q 009276 255 SKSSKLSSSEFWSLFFPSLTANISFWATVALNIPDFTRYAKSQNDQI 301 (538)
Q Consensus 255 ~~~~~~~~~~~~~~~~~ai~~~ig~~~~~~~~~sDysRy~k~~~~~~ 301 (538)
. .+ +....|...+.++-..+-. .+.-...|...||.+++++..
T Consensus 175 ~-~~--~~~~~~~~~~~~lPv~~~S-f~f~~ivPsl~~~~~~d~~k~ 217 (394)
T PF03222_consen 175 D-AP--PSPSDWSYILPALPVLVFS-FGFHNIVPSLVKYLGGDPKKI 217 (394)
T ss_pred c-cc--cccccHHHHHHHHHHHHHH-HHHHhhhHHHHHHhCccHHHH
Confidence 1 11 1112243344444433321 234456688889988654433
No 13
>PRK10484 putative transporter; Provisional
Probab=97.80 E-value=0.048 Score=60.52 Aligned_cols=105 Identities=13% Similarity=0.118 Sum_probs=55.0
Q ss_pred CcceehhhhhccccchHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhhhhcccccccCCCCCCCChh--HHHHHHHHHH
Q 009276 132 PFPVLARSSFGIKGAHIPTLLRALVGCG-WYGIETWIGGEAVFLLLPKFIKQSSILSQSLPWLGTSPL--EFACFIAFWL 208 (538)
Q Consensus 132 ~~~v~sR~~FG~~Gs~lp~li~~i~~ig-W~~v~~~~gg~al~~~l~~~~~~~~~~~~~~p~~g~t~~--~~i~~ii~~~ 208 (538)
+.+..-+.-||.+..++-+.+..+..+. +.+.+.+.++.+++.++.. .. ..|++.. .++..++..+
T Consensus 102 T~~e~l~~Ryg~~~~~~~~~~~~i~~~~~~~~~~l~~g~~~l~~i~~~--~~---------~~gi~~~~~~~~~~~~~~~ 170 (523)
T PRK10484 102 TIPDFLEERYDKTTRRIVSILFLIGYVVSFLPIVLYSGALALNSLFHV--SE---------LLGISYGAAIWLLVWLIGI 170 (523)
T ss_pred cHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--hh---------hcCCcHHHHHHHHHHHHHH
Confidence 5555666677776555555554444433 4556666677666654321 00 0122211 1222222222
Q ss_pred -HHHHHHhhchhhHHHHHhhhhhHHHHHHHHHHHHHHHhc
Q 009276 209 -AQLAIVWKGIEGIRELEKYSAPILIILTSSFLFWAYVNA 247 (538)
Q Consensus 209 -l~~~~~~~G~~~i~~~~~~~~p~~~v~~i~l~~~~~~~~ 247 (538)
..+-...-|++..-+...+...++++..+.+.+..+.+.
T Consensus 171 i~~~Yt~~GGl~aV~~TD~iQ~vim~i~~iiv~~~~l~~~ 210 (523)
T PRK10484 171 IGAIYAVFGGLKAVAVSDTINGIGLLIGGLLVPVFGLIAL 210 (523)
T ss_pred HHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 234456678999999888887766655444433334333
No 14
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=97.78 E-value=0.045 Score=59.44 Aligned_cols=111 Identities=10% Similarity=0.039 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccccccCC--CcceehhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 009276 103 QGIATVVAANVILLVPLVLTGHPGTKYGI--PFPVLARSSFGIKGAHIPTLLRALVGCGWYGIETWIGGEAVFLLLPKFI 180 (538)
Q Consensus 103 qal~aiiiG~~i~~~~~~l~g~~G~k~Gl--~~~v~sR~~FG~~Gs~lp~li~~i~~igW~~v~~~~gg~al~~~l~~~~ 180 (538)
.++++.+++.++........+.++.++-. +....+|..||.+.+.+-....++..+...+.+....+..+ ...+
T Consensus 46 ~~~i~~~i~~v~~~~~a~~~aEl~s~~P~~Gg~~~~~~~~~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l----~~~~ 121 (452)
T TIGR01773 46 AALLAYLLAGLLVVFIMRMLGEMAVANPDTGSFSTYADDAIGRWAGFTIGWLYWWFWVLVIPLEAIAAAGIL----QYWF 121 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhc
Confidence 45667777777666666666666655433 34567888888877666655555544444444433333322 2222
Q ss_pred hcccccccCCCCCCCChhHHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhH
Q 009276 181 KQSSILSQSLPWLGTSPLEFACFIAFWLAQLAIVWKGIEGIRELEKYSAPI 231 (538)
Q Consensus 181 ~~~~~~~~~~p~~g~t~~~~i~~ii~~~l~~~~~~~G~~~i~~~~~~~~p~ 231 (538)
|. ...++..+++.++...+-.+|.|...+++.+...+
T Consensus 122 ~~--------------~~~~~~~~~~~~~~~~~n~~gv~~~~~~~~~~~~~ 158 (452)
T TIGR01773 122 PD--------------IPLWLFSLILTIVLTLTNLYSVKSYGEFEFWFALI 158 (452)
T ss_pred Cc--------------CcHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 21 11355555555555677788999999999876644
No 15
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=97.75 E-value=0.099 Score=56.64 Aligned_cols=116 Identities=13% Similarity=-0.005 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccccCC--CcceehhhhhccccchHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhh
Q 009276 104 GIATVVAANVILLVPLVLTGHPGTKYGI--PFPVLARSSFGIKGAHIPTLLRALVG-CGWYGIETWIGGEAVFLLLPKFI 180 (538)
Q Consensus 104 al~aiiiG~~i~~~~~~l~g~~G~k~Gl--~~~v~sR~~FG~~Gs~lp~li~~i~~-igW~~v~~~~gg~al~~~l~~~~ 180 (538)
++++-+++.+.........+..+.++-. +.....|..||..-+.+-....++.. +++.+.... .. ......+
T Consensus 42 ~~~~~~i~~~~~l~~al~~aEL~s~~P~aGG~y~~~~~~~g~~~gf~~gw~~~~~~~~~~~~~~~~-~~----~~~~~~~ 116 (445)
T PRK10644 42 AIYGWLVTIIGALGLSMVYAKMSSLDPSPGGSYAYARRCFGPFLGYQTNVLYWLACWIGNIAMVVI-GV----GYLSYFF 116 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChhHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHH-HH----HHHHHHh
Confidence 3444444444333333333444433322 55666888999876666555544432 222221111 11 1112122
Q ss_pred hcccccccCCCCCCCChhHHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHHHH
Q 009276 181 KQSSILSQSLPWLGTSPLEFACFIAFWLAQLAIVWKGIEGIRELEKYSAPILII 234 (538)
Q Consensus 181 ~~~~~~~~~~p~~g~t~~~~i~~ii~~~l~~~~~~~G~~~i~~~~~~~~p~~~v 234 (538)
|.. .......+..+++..+...+-.+|.|...+++++.....++
T Consensus 117 ~~~----------~~~~~~~~~~~~~~~~~~~ln~~gvk~~~~i~~i~~~~~~i 160 (445)
T PRK10644 117 PIL----------KDPLVLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLALI 160 (445)
T ss_pred ccc----------CCcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHH
Confidence 211 00111122222233344556678999999999987755443
No 16
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=97.75 E-value=0.088 Score=56.91 Aligned_cols=84 Identities=14% Similarity=0.050 Sum_probs=47.4
Q ss_pred CcceehhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccCCCCCCCChhHHHHHHHHHHHHH
Q 009276 132 PFPVLARSSFGIKGAHIPTLLRALVGCGWYGIETWIGGEAVFLLLPKFIKQSSILSQSLPWLGTSPLEFACFIAFWLAQL 211 (538)
Q Consensus 132 ~~~v~sR~~FG~~Gs~lp~li~~i~~igW~~v~~~~gg~al~~~l~~~~~~~~~~~~~~p~~g~t~~~~i~~ii~~~l~~ 211 (538)
+.....|..||.+.+.+-.....+..+...+......++.+.. .+|.. ..++..+++.++..
T Consensus 72 g~y~~~~~~~G~~~gf~~gw~~~~~~~~~~~~~a~~~~~~l~~----~~p~~--------------~~~~~~~~~~~~~~ 133 (442)
T TIGR00908 72 GGYGFARRAFGPWGGFLAGTAILIEFAFAPPAIACFIGAYCES----LFPVG--------------PGWLAALVFYIVFI 133 (442)
T ss_pred CHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhccC--------------chhHHHHHHHHHHH
Confidence 3455678889887666655555544444444444333333322 22211 12333344445556
Q ss_pred HHHhhchhhHHHHHhhhhhHHH
Q 009276 212 AIVWKGIEGIRELEKYSAPILI 233 (538)
Q Consensus 212 ~~~~~G~~~i~~~~~~~~p~~~ 233 (538)
.+..+|.|...+++.+...+.+
T Consensus 134 ~ln~~g~~~~~~i~~~~~~~~~ 155 (442)
T TIGR00908 134 GINILGVGEAAKLEFVVTAVAI 155 (442)
T ss_pred HHHHHHHHHHHhHHHHHHHHHH
Confidence 7778899999999987665443
No 17
>PRK11387 S-methylmethionine transporter; Provisional
Probab=97.75 E-value=0.05 Score=59.48 Aligned_cols=32 Identities=13% Similarity=0.036 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHhhchhhHHHHHhhhhhH
Q 009276 200 FACFIAFWLAQLAIVWKGIEGIRELEKYSAPI 231 (538)
Q Consensus 200 ~i~~ii~~~l~~~~~~~G~~~i~~~~~~~~p~ 231 (538)
++..+++.++.+.+-.+|.|...+++.+...+
T Consensus 130 ~~~~~~~~~~~~~in~~gvk~~~~~~~~~~~~ 161 (471)
T PRK11387 130 WPWCLLFCALIFGLNVVSTRFFAEGEFWFSLI 161 (471)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 44344444555677788999888888776543
No 18
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=97.71 E-value=0.058 Score=59.21 Aligned_cols=109 Identities=12% Similarity=0.118 Sum_probs=66.5
Q ss_pred cccccC-CCcceehhhhhccccch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccCCCCCCCChhHHHH
Q 009276 125 PGTKYG-IPFPVLARSSFGIKGAH-IPTLLRALVGCGWYGIETWIGGEAVFLLLPKFIKQSSILSQSLPWLGTSPLEFAC 202 (538)
Q Consensus 125 ~G~k~G-l~~~v~sR~~FG~~Gs~-lp~li~~i~~igW~~v~~~~gg~al~~~l~~~~~~~~~~~~~~p~~g~t~~~~i~ 202 (538)
.+.|.| .+.+...+.-||.+..+ +-.+...+..+.+.+.|..-+|..++.+++ ++ .+.+
T Consensus 101 ~~r~~~~~T~~e~l~~Ryg~~~~~~~~~i~~~~~~~~~~~~ql~~~g~~l~~~~g-----------------i~--~~~~ 161 (483)
T PRK09442 101 LARKYNAVTLNDMLRARYQSRLLVWLASLSLLVFFFAAMTAQFIGGARLLETATG-----------------IS--YETG 161 (483)
T ss_pred HHHHcCCccHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----------------CC--HHHH
Confidence 344544 44555666667765433 333444555677889998888888776643 11 1233
Q ss_pred HHHHHHH-HHHHHhhchhhHHHHHhhhhhHHHHHHHHHHHHHHHhcCCCcc
Q 009276 203 FIAFWLA-QLAIVWKGIEGIRELEKYSAPILIILTSSFLFWAYVNAGGFGH 252 (538)
Q Consensus 203 ~ii~~~l-~~~~~~~G~~~i~~~~~~~~p~~~v~~i~l~~~~~~~~~g~~~ 252 (538)
.++..++ .+...+-|++..-+...+..+++.+..+.+....+.+.||.+.
T Consensus 162 iii~~~iv~iYt~~GGl~av~~TD~iQ~~i~~~~~~vi~~~~~~~~gG~~~ 212 (483)
T PRK09442 162 LLIFGITVALYTAFGGFRAVVLTDALQGIVMLVGTVILLIGVIHAGGGLEN 212 (483)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH
Confidence 3333333 4556678899999999988887766655555555555566544
No 19
>PRK15049 L-asparagine permease; Provisional
Probab=97.71 E-value=0.13 Score=56.71 Aligned_cols=112 Identities=18% Similarity=0.136 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccccc---cCCCcceehhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 009276 103 QGIATVVAANVILLVPLVLTGHPGTK---YGIPFPVLARSSFGIKGAHIPTLLRALVGCGWYGIETWIGGEAVFLLLPKF 179 (538)
Q Consensus 103 qal~aiiiG~~i~~~~~~l~g~~G~k---~Gl~~~v~sR~~FG~~Gs~lp~li~~i~~igW~~v~~~~gg~al~~~l~~~ 179 (538)
.++++-+++.++..+.+...+.++.+ .| ++....|..+|.+-+++..... .++|..... ....++..... .
T Consensus 62 ~~il~~li~~i~~~~v~~slaELas~~P~aG-g~y~y~~~~~G~~~gf~~GW~~---~l~~~~~~~-~~~~a~~~~~~-~ 135 (499)
T PRK15049 62 ALALVYLICGLFSFFILRALGELVLHRPSSG-SFVSYAREFLGEKAAYVAGWMY---FINWAMTGI-VDITAVALYMH-Y 135 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC-CHHHHHHHHhCcHhHHHHHHHH---HHHHHHHHH-HHHHHHHHHHH-H
Confidence 34566666666655555555555543 34 5667788888886544433333 233432211 11111111111 1
Q ss_pred hhcccccccCCCCCCCChhHHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhH
Q 009276 180 IKQSSILSQSLPWLGTSPLEFACFIAFWLAQLAIVWKGIEGIRELEKYSAPI 231 (538)
Q Consensus 180 ~~~~~~~~~~~p~~g~t~~~~i~~ii~~~l~~~~~~~G~~~i~~~~~~~~p~ 231 (538)
++.+ + + ...|+..+++.++.+.+-.+|.|...++|.+...+
T Consensus 136 ~~~~---~------~--~~~~~~~~~~~~l~~~iN~~gvk~~~~i~~~~~~i 176 (499)
T PRK15049 136 WGAF---G------G--VPQWVFALAALTIVGTMNMIGVKWFAEMEFWFALI 176 (499)
T ss_pred hccC---C------C--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2111 0 1 12455555556666778889999999999987744
No 20
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]
Probab=97.70 E-value=0.021 Score=60.95 Aligned_cols=50 Identities=22% Similarity=0.347 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHhhchhh-HHHHHhhhhhHHHHHHHHHHHHHHHhcC
Q 009276 199 EFACFIAFWLAQLAIVWKGIEG-IRELEKYSAPILIILTSSFLFWAYVNAG 248 (538)
Q Consensus 199 ~~i~~ii~~~l~~~~~~~G~~~-i~~~~~~~~p~~~v~~i~l~~~~~~~~~ 248 (538)
...+..+++++...+...|.+. |+|.+++..|.+.++++.++++.+...|
T Consensus 144 ~~~~~~~~~~lt~~iv~~GV~~GIEk~~kimMP~Lfvl~i~Lvi~~~tLpG 194 (439)
T COG0733 144 AVIFHLLFLVLTALIVSRGVKKGIEKANKIMMPLLFVLFIILVIRAVTLPG 194 (439)
T ss_pred HHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCcc
Confidence 3557788899999999999877 9999999999999999999999887644
No 21
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=97.69 E-value=0.023 Score=60.13 Aligned_cols=126 Identities=16% Similarity=0.095 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccc--CCCcceehhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 009276 101 WWQGIATVVAANVILLVPLVLTGHPGTKY--GIPFPVLARSSFGIKGAHIPTLLRALVGCGWYGIETWIGGEAVFLLLPK 178 (538)
Q Consensus 101 ~~qal~aiiiG~~i~~~~~~l~g~~G~k~--Gl~~~v~sR~~FG~~Gs~lp~li~~i~~igW~~v~~~~gg~al~~~l~~ 178 (538)
...+++..+++.++......+.+....++ +-++...+|..||.++.++..+...+........-....+..+...+..
T Consensus 27 ~~~~~~~~i~~~~~~~~~~l~~~el~~~~p~~~~~~~~~~~~~G~~~g~~~~~~~~~~~~~~~~ay~~~~~~~l~~~~~~ 106 (381)
T TIGR00837 27 FIWTLLLLILLWFLMLHSGLLLLEVYLTYPGGASFNTIAKDLLGKTGNIIAGLSLLFVLYILTYAYISGGGSILSRLIGE 106 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHH
Confidence 33444445554444433333333443333 4578899999999999887766555444333333333334444444332
Q ss_pred hhhcccccccCCCCCCCChhHHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHHHHHHHHH
Q 009276 179 FIKQSSILSQSLPWLGTSPLEFACFIAFWLAQLAIVWKGIEGIRELEKYSAPILIILTSSF 239 (538)
Q Consensus 179 ~~~~~~~~~~~~p~~g~t~~~~i~~ii~~~l~~~~~~~G~~~i~~~~~~~~p~~~v~~i~l 239 (538)
... . +. ...+..+++.++...+...|.|...|++.+..+..++.++.+
T Consensus 107 ~~~------~-----~~--~~~~~~~~~~~v~~~l~~~G~~~~~~v~~i~~~~~l~~l~~~ 154 (381)
T TIGR00837 107 YFG------F-----PW--SARAIVLIFTVLFGSFVWLSTSAVDRITRVLIFGKIIAFALV 154 (381)
T ss_pred hcC------C-----Cc--cHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHH
Confidence 110 0 11 123333444555567778899999999999887765554433
No 22
>PRK00701 manganese transport protein MntH; Reviewed
Probab=97.68 E-value=0.021 Score=61.98 Aligned_cols=62 Identities=11% Similarity=0.037 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccccccCCCcceehhhhhccccchHHHHHHHHHHHHHHHHH
Q 009276 103 QGIATVVAANVILLVPLVLTGHPGTKYGIPFPVLARSSFGIKGAHIPTLLRALVGCGWYGIE 164 (538)
Q Consensus 103 qal~aiiiG~~i~~~~~~l~g~~G~k~Gl~~~v~sR~~FG~~Gs~lp~li~~i~~igW~~v~ 164 (538)
+-++++++++++..++-.+.++.|..+|.+.....|..||.+-+++-.+.-.+..++...-|
T Consensus 66 ~LLW~llls~~~~~~~Q~~~~RlgivTG~~l~~~ir~~~~~~~~~~~~~~~~l~~~~~~~~e 127 (439)
T PRK00701 66 TLLWVILLSNLMAMLLQSLSAKLGIATGRDLAQACRDRYPRPVVWFLWIQAELAIMATDLAE 127 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhhcCCCHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHH
Confidence 34778888999989999999999999999999999999997666654444444444444444
No 23
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=97.65 E-value=0.073 Score=58.20 Aligned_cols=110 Identities=12% Similarity=0.090 Sum_probs=72.4
Q ss_pred ccccccC-CCcceehhhhhccccch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccCCCCCCCChhHHH
Q 009276 124 HPGTKYG-IPFPVLARSSFGIKGAH-IPTLLRALVGCGWYGIETWIGGEAVFLLLPKFIKQSSILSQSLPWLGTSPLEFA 201 (538)
Q Consensus 124 ~~G~k~G-l~~~v~sR~~FG~~Gs~-lp~li~~i~~igW~~v~~~~gg~al~~~l~~~~~~~~~~~~~~p~~g~t~~~~i 201 (538)
..+.|.| .+.+..-|.-||.+..+ +-.+...+..++|.+.|..-+|..++.+++ ++ .+.
T Consensus 99 ~~~~~~~~~T~~e~l~~Ryg~~~~~~~~~i~~i~~~~~~~~~ql~g~g~~l~~~~g-----------------i~--~~~ 159 (471)
T TIGR02119 99 IISRKYNAITINDVLKARYNNKFLVWLSSISLLVFFFSAMVAQFIGGARLIESLTG-----------------LS--YLT 159 (471)
T ss_pred HHHHHcCCccHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----------------CC--HHH
Confidence 3355555 45566667778876654 445556677889999999888888776643 11 234
Q ss_pred HHHHHHH-HHHHHHhhchhhHHHHHhhhhhHHHHHHHHHHHHHHHhcCCCcc
Q 009276 202 CFIAFWL-AQLAIVWKGIEGIRELEKYSAPILIILTSSFLFWAYVNAGGFGH 252 (538)
Q Consensus 202 ~~ii~~~-l~~~~~~~G~~~i~~~~~~~~p~~~v~~i~l~~~~~~~~~g~~~ 252 (538)
+.++..+ +.+...+-|++..-+...+..+++++..+.+....+.+.||..+
T Consensus 160 ~iii~~~iv~iYt~~GG~~av~~td~iQ~~v~~~~~~~~~~~~l~~~gG~~~ 211 (471)
T TIGR02119 160 ALFIFSSSVLIYTTFGGFRAVALTDAIQGIVMFTGTTILLIAVIKAGGGVEK 211 (471)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH
Confidence 4444444 33455678899999999999888877666555556666666543
No 24
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=97.65 E-value=0.027 Score=60.33 Aligned_cols=135 Identities=17% Similarity=0.164 Sum_probs=80.9
Q ss_pred hccCcHHHHHHHHHHHHHHHHHHHHhhcccccc-cCCCcceehhhhhccc-cchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009276 96 DLGMAWWQGIATVVAANVILLVPLVLTGHPGTK-YGIPFPVLARSSFGIK-GAHIPTLLRALVGCGWYGIETWIGGEAVF 173 (538)
Q Consensus 96 ~~GLs~~qal~aiiiG~~i~~~~~~l~g~~G~k-~Gl~~~v~sR~~FG~~-Gs~lp~li~~i~~igW~~v~~~~gg~al~ 173 (538)
..|++.+.-.++..++.++...+..-.- .| -..+.+...+.-||.+ ...+-+++..+..+.|.+.|..-.+..++
T Consensus 33 ~~G~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~T~~e~l~~Ryg~~~~~~~~~~~~i~~~~~~~~~q~~g~~~il~ 109 (407)
T TIGR00813 33 AYGFAIGFYELGALVLLIILGWLFVPIF---INNGAYTMPEYLEKRFGKRILRGLSVLSLILYIFLYMSVDLFSGALLIE 109 (407)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHcCCCchhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4465555444444444444333322221 22 2456666777778874 33444566678888999999888888877
Q ss_pred HHhhhhhhcccccccCCCCCCCChhHHHHHHHHHHH-HHHHHhhchhhHHHHHhhhhhHHHHHHHHHHHHHHHhcCCCcc
Q 009276 174 LLLPKFIKQSSILSQSLPWLGTSPLEFACFIAFWLA-QLAIVWKGIEGIRELEKYSAPILIILTSSFLFWAYVNAGGFGH 252 (538)
Q Consensus 174 ~~l~~~~~~~~~~~~~~p~~g~t~~~~i~~ii~~~l-~~~~~~~G~~~i~~~~~~~~p~~~v~~i~l~~~~~~~~~g~~~ 252 (538)
.+++. + .+.+.++..++ .+...+-|++..-+...+...++.+..+.+.++.+.+.||+.+
T Consensus 110 ~~~gi-----------------~--~~~~~ii~~~i~~~Yt~~GG~~av~~Td~iQ~~i~~~~~i~~~~~~~~~~GG~~~ 170 (407)
T TIGR00813 110 LITGL-----------------D--LYLSLLLLGAITILYTVFGGLKAVVWTDTIQAVIMILGTFILPVFAFSEVGGLGT 170 (407)
T ss_pred HHhCc-----------------h--HHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH
Confidence 66431 1 23333333333 3456678899999988888877666655555556666666544
No 25
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=97.62 E-value=0.019 Score=60.25 Aligned_cols=116 Identities=17% Similarity=0.193 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccccc-CCCcceehhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 009276 103 QGIATVVAANVILLVPLVLTGHPGTKY-GIPFPVLARSSFGIKGAHIPTLLRALVGCGWYGIETWIGGEAVFLLLPKFIK 181 (538)
Q Consensus 103 qal~aiiiG~~i~~~~~~l~g~~G~k~-Gl~~~v~sR~~FG~~Gs~lp~li~~i~~igW~~v~~~~gg~al~~~l~~~~~ 181 (538)
++.++.++|.++...........+.|+ +-+....+|..||.+.+++-.++..+..+.-.+... +.....++...
T Consensus 35 ~~wi~~ll~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~Gk~~g~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~- 109 (359)
T TIGR00912 35 DGWISIILGGLIIIFLLCLMIKIMSKFPEKNFSEILSKYLGKILGRLLSILFILYFFLIAAYLI----RIFADFIKTYL- 109 (359)
T ss_pred CeeHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHh-
Confidence 445666666666655555555555554 456788899999998777655443332222211211 22222222110
Q ss_pred cccccccCCCCCCCChhHHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHHHHH
Q 009276 182 QSSILSQSLPWLGTSPLEFACFIAFWLAQLAIVWKGIEGIRELEKYSAPILIIL 235 (538)
Q Consensus 182 ~~~~~~~~~p~~g~t~~~~i~~ii~~~l~~~~~~~G~~~i~~~~~~~~p~~~v~ 235 (538)
+++ + +.++..+++.++.......|.|.+.|.+.+..|+.++.
T Consensus 110 ----l~~-------t-p~~~~~l~~l~~~~~~~~~Gi~~i~r~~~i~~~~~i~~ 151 (359)
T TIGR00912 110 ----LPR-------T-PIIVIIILIIIVSIYIVRKGIEVLLRTAEILLIIFLIL 151 (359)
T ss_pred ----cCC-------C-CHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHH
Confidence 111 1 23444444445556667789999999999998877655
No 26
>TIGR00930 2a30 K-Cl cotransporter.
Probab=97.62 E-value=0.29 Score=58.17 Aligned_cols=127 Identities=13% Similarity=0.073 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH---hhccccc-ccCCCcceehhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009276 101 WWQGIATVVAANVILLVPLV---LTGHPGT-KYGIPFPVLARSSFGIKGAHIPTLLRALVGCGWYGIETWIGGEAVFLLL 176 (538)
Q Consensus 101 ~~qal~aiiiG~~i~~~~~~---l~g~~G~-k~Gl~~~v~sR~~FG~~Gs~lp~li~~i~~igW~~v~~~~gg~al~~~l 176 (538)
..+++++++++.++..+-.. -++..|. +.|=.+ ...+.+||........++..+....=.++.+.-.+..+..++
T Consensus 110 ~~~sll~~~la~~vtlltaLS~seiaTng~p~aGG~Y-~yisralGp~~Gf~iG~~~~la~~va~A~~~~Gf~eyl~~lf 188 (953)
T TIGR00930 110 IGLSLLIILLCCCVTTITGLSMSAIATNGVVKGGGAY-YLISRSLGPEFGGSIGLIFAFANAVAVAMYVVGFAETVLDLL 188 (953)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHH-HHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46788888888776543322 2333333 444444 445556777554444444433322222333222333333332
Q ss_pred hhhhhcccccccCCCCCCCChhHHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHHHHHH
Q 009276 177 PKFIKQSSILSQSLPWLGTSPLEFACFIAFWLAQLAIVWKGIEGIRELEKYSAPILIILT 236 (538)
Q Consensus 177 ~~~~~~~~~~~~~~p~~g~t~~~~i~~ii~~~l~~~~~~~G~~~i~~~~~~~~p~~~v~~ 236 (538)
. ... .............++.++. ++.+.+.++|.+...|++.+...+.++..
T Consensus 189 ~----~~~---~~~~~~~~~~~~iia~i~l-~ll~~In~~Gvk~~ak~q~vl~vi~ll~l 240 (953)
T TIGR00930 189 R----ENG---SKIMVDPINDIRIYGTVTV-VVLLGISFAGMEWENKAQVLFLVIVLLSI 240 (953)
T ss_pred h----hcc---cccccCccccchHHHHHHH-HHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 1 100 0000000111123444333 34456678899999999988765544433
No 27
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=97.61 E-value=0.048 Score=60.24 Aligned_cols=105 Identities=17% Similarity=0.107 Sum_probs=63.6
Q ss_pred CCcceehhhhhccccch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccCCCCCCCChhHHHHHHHHH
Q 009276 131 IPFPVLARSSFGIKGAH---IPTLLRALVGCGWYGIETWIGGEAVFLLLPKFIKQSSILSQSLPWLGTSPLEFACFIAFW 207 (538)
Q Consensus 131 l~~~v~sR~~FG~~Gs~---lp~li~~i~~igW~~v~~~~gg~al~~~l~~~~~~~~~~~~~~p~~g~t~~~~i~~ii~~ 207 (538)
.+.+..-+.-||.+... +-+++..+..+.|.+.|.+.++..++.+++ ++ .+.+.++..
T Consensus 108 ~T~~e~l~~Ry~~~~~~~~~~~~i~~~~~~~~~~~~ql~~~~~~l~~~~g-----------------i~--~~~~iii~~ 168 (502)
T PRK15419 108 LTLPDYFTGRFEDKSRILRIISALVILLFFTIYCASGIVAGARLFESTFG-----------------MS--YETALWAGA 168 (502)
T ss_pred eeHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----------------CC--HHHHHHHHH
Confidence 45556666777764322 233444556678889998878877766543 11 123333333
Q ss_pred H-HHHHHHhhchhhHHHHHhhhhhHHHHHHHHHHHHHHHhcCCCcccc
Q 009276 208 L-AQLAIVWKGIEGIRELEKYSAPILIILTSSFLFWAYVNAGGFGHML 254 (538)
Q Consensus 208 ~-l~~~~~~~G~~~i~~~~~~~~p~~~v~~i~l~~~~~~~~~g~~~~~ 254 (538)
+ +.+-..+-|++..-+...+...++++..+.+.+..+.+.||+++.+
T Consensus 169 ~iv~iYt~~GGl~aV~~TD~iQ~~imi~g~i~~~~~~~~~~GG~~~~~ 216 (502)
T PRK15419 169 AATILYTFIGGFLAVSWTDTVQASLMIFALILTPVIVIISVGGFGDSL 216 (502)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 3 3344567789999998888887766655544455555667765543
No 28
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=97.59 E-value=0.18 Score=55.10 Aligned_cols=68 Identities=16% Similarity=0.210 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHh-hccccc---ccCCCcceehhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 009276 103 QGIATVVAANVILLVPLVL-TGHPGT---KYGIPFPVLARSSFGIKGAHIPTLLRALVGCGWYGIETWIGGEA 171 (538)
Q Consensus 103 qal~aiiiG~~i~~~~~~l-~g~~G~---k~Gl~~~v~sR~~FG~~Gs~lp~li~~i~~igW~~v~~~~gg~a 171 (538)
.++...+++.++..+..++ .+..+. +.| +.....|..||.+...+-....++..+.|+......++..
T Consensus 31 ~~~~~~~i~~~~~~ip~al~~aEL~~~~P~~G-G~y~~~~~a~G~~~gf~~gw~~w~~~~~~~p~~~~~~~~~ 102 (474)
T TIGR03813 31 SAAFYYLFAAIFFLVPVSLVAAELATAWPEKG-GVFRWVGEAFGARWGFLAIFMLWAQVTIWFPTVLTFGAVS 102 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCCCCC-CceeeHhhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555544333332 233333 334 5678889999998888887778887777776544333333
No 29
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=97.58 E-value=0.16 Score=54.08 Aligned_cols=223 Identities=17% Similarity=0.227 Sum_probs=109.0
Q ss_pred HHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHHHHHHHHHHHHHHHhcCCCcccccccccCCc-hhhHHHHHHH---HHH
Q 009276 200 FACFIAFWLAQLAIVWKGIEGIRELEKYSAPILIILTSSFLFWAYVNAGGFGHMLSKSSKLSS-SEFWSLFFPS---LTA 275 (538)
Q Consensus 200 ~i~~ii~~~l~~~~~~~G~~~i~~~~~~~~p~~~v~~i~l~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~a---i~~ 275 (538)
.+..++|-.+...+.+.+-|.++++.|+..|.+++..+.+.+..+.+..| +.-....+... +.....+..+ +.+
T Consensus 112 ~i~siiff~i~~~l~~~~~k~~~~iGk~LTP~lLi~l~~lii~g~~~p~g--~~~~~~~~~~~~~~f~~g~l~GY~TmD~ 189 (378)
T TIGR00796 112 FIFSLIFFAVVLLLSLNPSKLIDRVGKFLTPALLVTLLALIIKALLWPAG--PILAASGAYASQQAFSKGFLEGYLTMDA 189 (378)
T ss_pred HHHHHHHHHHHHHHHcCcccHHHHhHHHHHHHHHHHHHHHHHHHHHcCCC--CcCCcccccccccHHHHHHHHHHHHHHH
Confidence 34445555666678899999999999999999988777766655554322 11111111211 2122223222 222
Q ss_pred HHHHHHhHhcccccccc-ccccCCcchhhc--hhh-hHHHHHHHHHHHHH-hhhhhhhhhccccCHHHHHHHh----hhh
Q 009276 276 NISFWATVALNIPDFTR-YAKSQNDQILGQ--AGL-PIFMGAFTFVGLAI-TCSTQVIFGRVISSPIQLLDQI----GGI 346 (538)
Q Consensus 276 ~ig~~~~~~~~~sDysR-y~k~~~~~~~g~--~g~-p~~~~~~~~~G~~~-~~a~~~~~G~~~~dp~~~l~~~----g~~ 346 (538)
..+...+|. ...+..+ ..|++++..... .|+ .........+|... .........+ ..|..+++.+. -+.
T Consensus 190 laal~fg~i-iv~~i~~~g~~~~~~~~~~~i~~G~ia~i~l~~vY~~L~~lGa~~~~~~~~-~~~~~~~l~~~a~~~~G~ 267 (378)
T TIGR00796 190 LAALVFGII-VVNAIRSRGVTKPKKITKYTIKAGLIAAVLLAFIYLSLFYLGATSAAAAGD-AVNGAQILSAYSQHLFGS 267 (378)
T ss_pred HHHHHHHHH-HHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHhhhcc-cCCcHHHHHHHHHHHcch
Confidence 222222221 2223333 455554443222 222 11111111122111 1111111221 12344444332 233
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhHHhHhhhcCcccccchhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHhhhHhH
Q 009276 347 TTRILGIIGISLATITTNIAANVVAPANALVNLRPSIFTFRKGAILTALLGIAFQPWRLLKSSESFVYTWLVGYSALLGP 426 (538)
Q Consensus 347 ~~~~~~~l~i~la~i~~Ni~~N~ys~~~~l~~l~pk~~~~~r~~ii~avl~~~l~pw~l~~~~~~fl~~fL~~lg~~l~P 426 (538)
.+..+..+.+.++.++|-+ .-.-+.+--+..+.|| .+.|...++..+.+..+...++ +..+ ++..-.-.++=|
T Consensus 268 ~G~~ll~i~v~lACLtT~i-Gli~~~a~~f~~~~~k-~~y~~~v~~~~l~s~~ia~~Gl----~~Ii-~~~~PvL~~~YP 340 (378)
T TIGR00796 268 LGSFLLGLIITLACLTTAV-GLTTACSEYFHKLVPK-LSYKTWVIVFTLFSFIVANLGL----TQII-SISIPVLMIIYP 340 (378)
T ss_pred hHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHhCH----HHHH-HHHHHHHHHHHH
Confidence 4455566778889888863 4445555566677787 6777777777777776654322 3333 333344445556
Q ss_pred HHHHHhh
Q 009276 427 IGGIILA 433 (538)
Q Consensus 427 ~~gI~l~ 433 (538)
.+.+.+.
T Consensus 341 ~~i~lil 347 (378)
T TIGR00796 341 LAIVLIL 347 (378)
T ss_pred HHHHHHH
Confidence 6555554
No 30
>PRK10238 aromatic amino acid transporter; Provisional
Probab=97.54 E-value=0.17 Score=55.21 Aligned_cols=113 Identities=14% Similarity=0.036 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccccccCC--CcceehhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 009276 103 QGIATVVAANVILLVPLVLTGHPGTKYGI--PFPVLARSSFGIKGAHIPTLLRALVGCGWYGIETWIGGEAVFLLLPKFI 180 (538)
Q Consensus 103 qal~aiiiG~~i~~~~~~l~g~~G~k~Gl--~~~v~sR~~FG~~Gs~lp~li~~i~~igW~~v~~~~gg~al~~~l~~~~ 180 (538)
.++++-+++.++..+.+...+.++.++-. ++...+|..||...+.+.....+ ++|....... ..+....++..+
T Consensus 46 ~~i~~~~i~gi~~~~v~~s~aEl~s~~P~aGg~y~~~~~~~g~~~gf~~Gw~~~---~~~~~~~~~~-~~~~~~~~~~~~ 121 (456)
T PRK10238 46 GIILGYAIAGFIAFLIMRQLGEMVVEEPVAGSFSHFAYKYWGSFAGFASGWNYW---VLYVLVAMAE-LTAVGKYIQFWY 121 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHcCcHHHHHHHHHHH---HHHHHHHHHH-HHHHHHHHHHhc
Confidence 35566666666655555555555543333 34445666677655544433333 3332222111 111222222111
Q ss_pred hcccccccCCCCCCCChhHHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHHH
Q 009276 181 KQSSILSQSLPWLGTSPLEFACFIAFWLAQLAIVWKGIEGIRELEKYSAPILI 233 (538)
Q Consensus 181 ~~~~~~~~~~p~~g~t~~~~i~~ii~~~l~~~~~~~G~~~i~~~~~~~~p~~~ 233 (538)
|. ...|....++.++...+-.+|.|...++|.+...+-+
T Consensus 122 p~--------------~~~~~~~~i~~~~~~~lN~~gv~~~~~~~~~~~~iki 160 (456)
T PRK10238 122 PE--------------IPTWVSAAVFFVVINAINLTNVKVFGEMEFWFAIIKV 160 (456)
T ss_pred Cc--------------CcHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 10 1245556666667777888999999999998765543
No 31
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=97.49 E-value=0.029 Score=60.35 Aligned_cols=293 Identities=18% Similarity=0.203 Sum_probs=143.4
Q ss_pred HHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHHHHHHHHHHHHHHHhcCCCcccccccccCCchhhHHHHHHH---HHH
Q 009276 199 EFACFIAFWLAQLAIVWKGIEGIRELEKYSAPILIILTSSFLFWAYVNAGGFGHMLSKSSKLSSSEFWSLFFPS---LTA 275 (538)
Q Consensus 199 ~~i~~ii~~~l~~~~~~~G~~~i~~~~~~~~p~~~v~~i~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~a---i~~ 275 (538)
.++-.++|-.+...++...-|.++++.|+..|++++....+.+..+.+..| +.-+..++.....+...+..+ +.+
T Consensus 118 ~~ifs~iFF~i~~~l~~~p~kivd~iGk~LTP~LL~~l~ilii~~i~~p~g--~~~~~~~~y~~~~f~~Gf~eGY~TMD~ 195 (427)
T PF05525_consen 118 LLIFSIIFFAITYLLSLNPSKIVDRIGKFLTPILLILLAILIIKGIFSPIG--PPQAPSGAYASNPFFKGFLEGYQTMDA 195 (427)
T ss_pred hhhhhHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--CccccchhhhhhHHHHHHHHHHhhhhH
Confidence 344556677777888889999999999999999988877776655554322 211111111111112222221 111
Q ss_pred HHHHHHhHhccccccccc-cccCCcchhhc--hhhhHHHHHH-HHHHHHHhhh-hhhhhhccccCHHHHHHHh----hhh
Q 009276 276 NISFWATVALNIPDFTRY-AKSQNDQILGQ--AGLPIFMGAF-TFVGLAITCS-TQVIFGRVISSPIQLLDQI----GGI 346 (538)
Q Consensus 276 ~ig~~~~~~~~~sDysRy-~k~~~~~~~g~--~g~p~~~~~~-~~~G~~~~~a-~~~~~G~~~~dp~~~l~~~----g~~ 346 (538)
..+...+.. ...+.-+. .+++|+..... .|+--...+. .-.|.....+ +...+++ ..|..+++.+. -+.
T Consensus 196 laal~Fg~i-Ii~~i~~~g~~~~k~~~~~~~~ag~ia~~lL~~IY~gL~~lGa~~~~~~~~-~~~g~~lL~~i~~~~~G~ 273 (427)
T PF05525_consen 196 LAALAFGII-IINAIRQKGYKDKKEIKKYTIKAGLIAGILLALIYGGLAYLGATSSGSFPD-DINGAELLSQIANHLFGS 273 (427)
T ss_pred HHHHHHHHH-HHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcccccC-CCCHHHHHHHHHHHHcCh
Confidence 122111111 11222222 22333333222 1111111111 1122111111 1112222 24566666544 234
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhHHhHhhhcCcccccchhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHhhhHhH
Q 009276 347 TTRILGIIGISLATITTNIAANVVAPANALVNLRPSIFTFRKGAILTALLGIAFQPWRLLKSSESFVYTWLVGYSALLGP 426 (538)
Q Consensus 347 ~~~~~~~l~i~la~i~~Ni~~N~ys~~~~l~~l~pk~~~~~r~~ii~avl~~~l~pw~l~~~~~~fl~~fL~~lg~~l~P 426 (538)
.+.++..+.+.+|.++|-+ .=..+.+--+.+++|| ++.|...+++++++.+++-.++ +..+ ++..-+-.++=|
T Consensus 274 ~G~~ll~iiv~lACLTTaI-GL~~a~a~yf~~~~~k-isY~~~v~i~~i~S~~ian~Gl----~~Ii-~~s~PiL~~iYP 346 (427)
T PF05525_consen 274 AGQILLGIIVFLACLTTAI-GLISACAEYFSELFPK-ISYKVWVIIFTIFSFIIANLGL----DQII-KISVPILMFIYP 346 (427)
T ss_pred hHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcc-cChHHHHHHHHHHHHHHHHhCH----HHHH-HHHHHHHHHHhH
Confidence 4556667888899999985 4455666778888884 7999999998899888876544 3333 333333344555
Q ss_pred HHHHHhhhhhhhhcCCCCcccccccCCCCcccccCCCchHHHHHHHHHHhhcccccccccc----ccccccccchhccch
Q 009276 427 IGGIILADYYLIQGAKLSIKYLYSLNPNGAYYYSGGYNLVAIMALSIGILPVIPGFLQKVG----LVVTIPNSFVVIYNN 502 (538)
Q Consensus 427 ~~gI~l~Dy~liRr~~~~~~~Ly~~~~~g~Y~y~~G~N~~ai~A~~~G~~~~~pg~~~~~g----~~~~~~~~~~~~~~~ 502 (538)
.+-+.+.=-++-|+-+.+ + . -..+....+.+.+..-.+--.....+ ....+| ....++
T Consensus 347 ~~IvLIll~l~~~~~~~~-~--------~------~y~~~v~~t~i~s~~~~l~~~~~~~~~~~~~~~~lP---l~~~gl 408 (427)
T PF05525_consen 347 VAIVLILLNLFDKFIKNK-K--------I------VYRGTVLVTFIFSLLDALNSLGISIAILTSLLSMLP---LYSYGL 408 (427)
T ss_pred HHHHHHHHHHHHHHhCCC-C--------c------eeeeeehHHHHHHHHHHHHHcccchhHHHHHHHhCC---CccCCC
Confidence 555544433222211111 1 1 12333445555554332111100000 011122 224678
Q ss_pred hHHHHHHHHHHHHHHHhh
Q 009276 503 AWFFSFFLAGFVYWVLSL 520 (538)
Q Consensus 503 s~~~g~~vs~vvY~~l~~ 520 (538)
+|++=.++++++-+++.|
T Consensus 409 ~Wi~Pa~i~~iig~ii~k 426 (427)
T PF05525_consen 409 GWIVPALIGFIIGLIIDK 426 (427)
T ss_pred ccHHHHHHHHHHHHHhcc
Confidence 898888888887777644
No 32
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=97.38 E-value=0.19 Score=55.30 Aligned_cols=105 Identities=16% Similarity=0.137 Sum_probs=65.5
Q ss_pred CCcceehhhhhccccch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccCCCCCCCChhHHHHHHHHH
Q 009276 131 IPFPVLARSSFGIKGAH---IPTLLRALVGCGWYGIETWIGGEAVFLLLPKFIKQSSILSQSLPWLGTSPLEFACFIAFW 207 (538)
Q Consensus 131 l~~~v~sR~~FG~~Gs~---lp~li~~i~~igW~~v~~~~gg~al~~~l~~~~~~~~~~~~~~p~~g~t~~~~i~~ii~~ 207 (538)
.+.+..-+.-||.+... +.+++..+..+.|.+.|..-+|..++.+++ ++ .+.+.++..
T Consensus 104 ~T~~e~l~~Ryg~~~~~~~~~~ai~~~~~~~~~~~~~l~~~~~~l~~~~g-----------------i~--~~~~iii~~ 164 (487)
T TIGR02121 104 ITLPDFFENRFNDKSRLLRIISALIILVFFTIYTSSGLVAGGKLFESTFG-----------------LD--YKTGLLIGA 164 (487)
T ss_pred ccHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----------------cc--HHHHHHHHH
Confidence 45677777778854322 234444555667888898877777766542 11 233333333
Q ss_pred HH-HHHHHhhchhhHHHHHhhhhhHHHHHHHHHHHHHHHhcCCCcccc
Q 009276 208 LA-QLAIVWKGIEGIRELEKYSAPILIILTSSFLFWAYVNAGGFGHML 254 (538)
Q Consensus 208 ~l-~~~~~~~G~~~i~~~~~~~~p~~~v~~i~l~~~~~~~~~g~~~~~ 254 (538)
++ .+-..+-|++..-+...+...++++..+.+..+.+.+.||+++.+
T Consensus 165 ~i~~~Yt~~GGl~av~~TD~iQ~~i~~~~~~~v~~~~~~~~GG~~~~~ 212 (487)
T TIGR02121 165 LIIVIYTFFGGFLAVSWTDFVQGLLMFFALVLVPIVALFNLGGFGETL 212 (487)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 33 344567789999998888877776666555566666777765543
No 33
>PRK12488 acetate permease; Provisional
Probab=97.37 E-value=0.23 Score=55.54 Aligned_cols=131 Identities=15% Similarity=0.062 Sum_probs=74.6
Q ss_pred hccCcHHHHHHHHHHHHHHHHHHHH-hhcccccccCCCcceehhhhhccccch-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009276 96 DLGMAWWQGIATVVAANVILLVPLV-LTGHPGTKYGIPFPVLARSSFGIKGAH-IPTLLRALVGCGWYGIETWIGGEAVF 173 (538)
Q Consensus 96 ~~GLs~~qal~aiiiG~~i~~~~~~-l~g~~G~k~Gl~~~v~sR~~FG~~Gs~-lp~li~~i~~igW~~v~~~~gg~al~ 173 (538)
..|++.+.-.+...+|.++...+.+ -.-+.|. .+.+...+.-||.+..+ +-+++..+..+.|.+.|..-+|..++
T Consensus 97 ~~G~~~~~~~~g~~~g~~~~~~~~a~~lr~~g~---~T~~d~l~~Rf~s~~~r~laai~~i~~~~~yl~~q~~g~g~il~ 173 (549)
T PRK12488 97 MNGYDGLLYALGVLAGWPIILFLIAERLRNLGK---YTFADVVSYRLAQGPVRLTAAFGTLTVVLMYLVAQMVGAGKLIE 173 (549)
T ss_pred HhChhHHHHHHHHHHHHHHHHHHHHHHHHHCCC---cchHHHHHHHcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466654444455555444333221 1111221 34444445556655444 55566667778999999888887776
Q ss_pred HHhhhhhhcccccccCCCCCCCChhHHHHHHHHHHHH-HHHHhhchhhHHHHHhhhhhHHHHHHHHHHHHHHHhcC
Q 009276 174 LLLPKFIKQSSILSQSLPWLGTSPLEFACFIAFWLAQ-LAIVWKGIEGIRELEKYSAPILIILTSSFLFWAYVNAG 248 (538)
Q Consensus 174 ~~l~~~~~~~~~~~~~~p~~g~t~~~~i~~ii~~~l~-~~~~~~G~~~i~~~~~~~~p~~~v~~i~l~~~~~~~~~ 248 (538)
.+++ ++ .+.+.++.+++. +...+-|++..-+.+.+...++.+..+.+.++.+.+.|
T Consensus 174 ~l~g-----------------i~--~~~~iii~~~i~~~Yt~~GGm~av~~td~iQ~~im~~~~i~~~~~~l~~~g 230 (549)
T PRK12488 174 LLFG-----------------IS--YLYAVVIVGALMVLYVTFGGMLATTWVQIIKAVLLLSGTSFMAFMVLKHFG 230 (549)
T ss_pred HHhC-----------------CC--HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 6542 11 233444444444 34456789999998888887776666555555555555
No 34
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=97.33 E-value=0.25 Score=54.05 Aligned_cols=110 Identities=14% Similarity=0.050 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccccccC---CCcceehhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 009276 103 QGIATVVAANVILLVPLVLTGHPGTKYG---IPFPVLARSSFGIKGAHIPTLLRALVGCGWYGIETWIGGEAVFLLLPKF 179 (538)
Q Consensus 103 qal~aiiiG~~i~~~~~~l~g~~G~k~G---l~~~v~sR~~FG~~Gs~lp~li~~i~~igW~~v~~~~gg~al~~~l~~~ 179 (538)
..+++.+++.++........+..+.++- =.+....|..||.+-+.+.....++..+...+.+....+..+.. .
T Consensus 37 ~~i~~~~i~~~~~~~~a~~~aEl~s~~P~~gG~~~~~~~~~~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~----~ 112 (478)
T TIGR00913 37 GLLIGYAIMGSIIYCVMQSLGEMATFYPVVSGSFATYASRFVDPAFGFAVGWNYWLQWLIVLPLELVTASMTIQY----W 112 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----c
Confidence 3456666666655555555555555543 23456788889887776665555555444444444333333221 1
Q ss_pred hhcccccccCCCCCCCChhHHHHHHHHHHHHHHHHhhchhhHHHHHhhhhh
Q 009276 180 IKQSSILSQSLPWLGTSPLEFACFIAFWLAQLAIVWKGIEGIRELEKYSAP 230 (538)
Q Consensus 180 ~~~~~~~~~~~p~~g~t~~~~i~~ii~~~l~~~~~~~G~~~i~~~~~~~~p 230 (538)
.+ ......++ .++.++.+.+-.+|.|...+++.+...
T Consensus 113 ~~------------~~~~~~~~--~~~~~~~~~in~~gv~~~~~~~~~~~~ 149 (478)
T TIGR00913 113 TD------------KVNPAVWI--AIFYVFIVIINLFGVKGYGEAEFWFSS 149 (478)
T ss_pred CC------------CCCHHHHH--HHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 11 01111222 233445566778999999999987653
No 35
>TIGR00909 2A0306 amino acid transporter.
Probab=97.27 E-value=0.38 Score=51.65 Aligned_cols=131 Identities=13% Similarity=-0.052 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccccCC--CcceehhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 009276 104 GIATVVAANVILLVPLVLTGHPGTKYGI--PFPVLARSSFGIKGAHIPTLLRALVGCGWYGIETWIGGEAVFLLLPKFIK 181 (538)
Q Consensus 104 al~aiiiG~~i~~~~~~l~g~~G~k~Gl--~~~v~sR~~FG~~Gs~lp~li~~i~~igW~~v~~~~gg~al~~~l~~~~~ 181 (538)
++++.+++.++........+..+.++-- +.....|..||.+.+++-.....+..+...+......++.+..++... +
T Consensus 38 ~~l~~li~~~~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~G~~~g~~~gw~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~ 116 (429)
T TIGR00909 38 VILSFVLAGLTALFIALVYAELAAMLPVAGSPYTYAYEAMGELTAFIIGWSLWLEYGVAVAAVAVGWGGYLQEFLPGV-G 116 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcceeeHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-c
Confidence 4455555655554444444444433322 556777888998877776666555544444555444444444433210 0
Q ss_pred cccccccCCCC--CCCChhHHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHHHHHHHH
Q 009276 182 QSSILSQSLPW--LGTSPLEFACFIAFWLAQLAIVWKGIEGIRELEKYSAPILIILTSS 238 (538)
Q Consensus 182 ~~~~~~~~~p~--~g~t~~~~i~~ii~~~l~~~~~~~G~~~i~~~~~~~~p~~~v~~i~ 238 (538)
. +.++.... ....... +..+++.++...+..+|.|...|++.+...+.++..+.
T Consensus 117 ~--~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~l~~~g~~~~~~~~~v~~~~~i~~l~~ 172 (429)
T TIGR00909 117 L--DLPAVLTAKPGNGGVFN-LPALLIVLFLTYILYLGAKESGKVNDILVVLKVAALLL 172 (429)
T ss_pred c--cCchhhhcCCccccccc-HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHH
Confidence 0 00100000 0000001 12233445556778899999999999988765554443
No 36
>PRK10746 putative transport protein YifK; Provisional
Probab=97.25 E-value=0.45 Score=51.93 Aligned_cols=111 Identities=10% Similarity=0.006 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccccccCC--CcceehhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 009276 103 QGIATVVAANVILLVPLVLTGHPGTKYGI--PFPVLARSSFGIKGAHIPTLLRALVGCGWYGIETWIGGEAVFLLLPKFI 180 (538)
Q Consensus 103 qal~aiiiG~~i~~~~~~l~g~~G~k~Gl--~~~v~sR~~FG~~Gs~lp~li~~i~~igW~~v~~~~gg~al~~~l~~~~ 180 (538)
.++++-+++.++....+...+.++..+-. ++...+|..+|.+...+.....+ +.|..+.... ..+....++..+
T Consensus 44 ~~~l~~~i~g~~~~~v~~~~aEl~~~~P~sGg~~~y~~~~~g~~~Gf~~gw~~~---~~~~~~~~~~-~~a~~~~l~~~~ 119 (461)
T PRK10746 44 SVLLAYIIAGLFVFFIMRSMGEMLFLEPVTGSFAVYAHRYMSPFFGYLTAWSYW---FMWMAVGISE-ITAIGVYVQFWF 119 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhCcHHHHHHHHHHH---HHHHHHHHHH-HHHHHHHHHHcc
Confidence 45667777766655555555666543321 44666777777755543333332 2333221111 012222222221
Q ss_pred hcccccccCCCCCCCChhHHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhH
Q 009276 181 KQSSILSQSLPWLGTSPLEFACFIAFWLAQLAIVWKGIEGIRELEKYSAPI 231 (538)
Q Consensus 181 ~~~~~~~~~~p~~g~t~~~~i~~ii~~~l~~~~~~~G~~~i~~~~~~~~p~ 231 (538)
|. . ..++...++.++.+.+-.+|.|...++|.+...+
T Consensus 120 p~-------~-------~~~~~~~~~~~~~~~lN~~gv~~~~~~e~~~~~~ 156 (461)
T PRK10746 120 PE-------M-------AQWIPALIAVALVALANLAAVRLYGEIEFWFAMI 156 (461)
T ss_pred CC-------C-------chHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 21 1 1344444555556667788999999988876643
No 37
>PRK10655 potE putrescine transporter; Provisional
Probab=97.24 E-value=0.42 Score=51.55 Aligned_cols=115 Identities=10% Similarity=-0.019 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccccc---cCCCcceehhhhhccccchHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhh
Q 009276 103 QGIATVVAANVILLVPLVLTGHPGTK---YGIPFPVLARSSFGIKGAHIPTLLRALVGC-GWYGIETWIGGEAVFLLLPK 178 (538)
Q Consensus 103 qal~aiiiG~~i~~~~~~l~g~~G~k---~Gl~~~v~sR~~FG~~Gs~lp~li~~i~~i-gW~~v~~~~gg~al~~~l~~ 178 (538)
.++++-+++.++..+.....+..+.+ .| +.....|..||.+...+.....++..+ ++.++ +.+....+..
T Consensus 39 ~~~~~w~i~~~~~~~~a~~~aeL~~~~P~~G-G~y~y~~~~~G~~~gf~~gw~~~~~~~~~~~~~-----a~~~~~y~~~ 112 (438)
T PRK10655 39 ISILSWLVTAVGSMALAYAFAKCGMFSRKSG-GMGGYAEYAFGKSGNFMANYTYGVSLLIANVAI-----AISAVGYGTE 112 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhCCCCC-chHHHHHHHcCcchHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHH
Confidence 45566666666544443334444433 33 346677888998766554444332221 12221 1111111122
Q ss_pred hhhcccccccCCCCCCCChhHHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHHH
Q 009276 179 FIKQSSILSQSLPWLGTSPLEFACFIAFWLAQLAIVWKGIEGIRELEKYSAPILI 233 (538)
Q Consensus 179 ~~~~~~~~~~~~p~~g~t~~~~i~~ii~~~l~~~~~~~G~~~i~~~~~~~~p~~~ 233 (538)
.+|.. ......++..+++..+...+-.+|.|...+++++.....+
T Consensus 113 ~~~~~----------~~~~~~~~~~~~~l~~~~~ln~~g~~~~~~i~~i~~~~~l 157 (438)
T PRK10655 113 LFGAT----------LSPVQICLATIGVLWLCTVANFGGARITGQISSVTVWGVI 157 (438)
T ss_pred hcccc----------cchHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 22210 0011123333333344555677899999999887665443
No 38
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=97.24 E-value=0.18 Score=54.47 Aligned_cols=294 Identities=13% Similarity=0.115 Sum_probs=148.5
Q ss_pred HHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHHHHHHHHHHHHHHHhcCCCcccccccccCCchhhHHHHHHH---HHH
Q 009276 199 EFACFIAFWLAQLAIVWKGIEGIRELEKYSAPILIILTSSFLFWAYVNAGGFGHMLSKSSKLSSSEFWSLFFPS---LTA 275 (538)
Q Consensus 199 ~~i~~ii~~~l~~~~~~~G~~~i~~~~~~~~p~~~v~~i~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~a---i~~ 275 (538)
.++--++|-.+...++...-|.++++.|+..|+++++...+++-.+.+.-| +.-...++.....+...+..+ +.+
T Consensus 122 ~~ifs~iFF~i~~~l~l~p~klvd~iGK~LTP~LL~~l~~lii~~i~~p~g--~~~~~~~~y~~~~f~~Gf~eGY~TMDa 199 (439)
T PRK15433 122 LFIYSLVYFAIVILVSLYPGKLLDTVGNFLAPLKIIALVILSVAAIVWPAG--SISTATEAYQNAAFSNGFVNGYLTMDT 199 (439)
T ss_pred HHHHHHHHHHHHHHHHcChhhHHHHhHHHHHHHHHHHHHHHHHHHHhcCCC--CCCCcchhhhhhhHHHHHHhhHHHHHH
Confidence 345556777778888889999999999999999988777666555544322 210000111111111112211 111
Q ss_pred HHHHHHhHhcccccc-ccccccCCcchhhc--hhh------hHHHHHHHHHHHHHhhhhhhhhhccccCHHHHHH----H
Q 009276 276 NISFWATVALNIPDF-TRYAKSQNDQILGQ--AGL------PIFMGAFTFVGLAITCSTQVIFGRVISSPIQLLD----Q 342 (538)
Q Consensus 276 ~ig~~~~~~~~~sDy-sRy~k~~~~~~~g~--~g~------p~~~~~~~~~G~~~~~a~~~~~G~~~~dp~~~l~----~ 342 (538)
..+...+.. ...+. .|-.+++|+..... .|+ .+.......+|+. +...+++ ..|..+++. .
T Consensus 200 laal~Fg~i-ii~~i~~~G~~~~~~~~k~t~~ag~ia~~~L~~vY~gL~~lGa~----s~~~~~~-~~~g~~il~~~~~~ 273 (439)
T PRK15433 200 LGAMVFGIV-IVNAARSRGVTEARLLTRYTVWAGLMAGVGLTLLYLALFRLGSD----SASLVDQ-SANGAAILHAYVQH 273 (439)
T ss_pred HHHHHHHHH-HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CcccccC-CCcHhHHHHHHHHH
Confidence 111111111 11122 22233344332222 121 1111112223321 1112332 224444433 3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhhhhhhhHHhHhhhcCcccccchhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHhh
Q 009276 343 IGGITTRILGIIGISLATITTNIAANVVAPANALVNLRPSIFTFRKGAILTALLGIAFQPWRLLKSSESFVYTWLVGYSA 422 (538)
Q Consensus 343 ~g~~~~~~~~~l~i~la~i~~Ni~~N~ys~~~~l~~l~pk~~~~~r~~ii~avl~~~l~pw~l~~~~~~fl~~fL~~lg~ 422 (538)
.-+..+.++..+.+.++..+|-+ .|.++.+--+..++| ++.|...++..+++.+++-.++ ++.+ .+..-+-.
T Consensus 274 ~~G~~G~~ll~iiv~lACLTTaI-GLi~a~a~~f~~~~~--isY~~~v~i~~l~S~~lSn~G~----~~II-~~s~PiL~ 345 (439)
T PRK15433 274 TFGGGGSFLLAALIFIACLVTAV-GLTCACAEFFAQYVP--LSYRTLVFILGGFSMVVSNLGL----SQLI-QISVPVLT 345 (439)
T ss_pred HhCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhcC--CcHHHHHHHHHHHHHHHHHhHH----HHHH-HHHHHHHH
Confidence 33344556667788899999984 899999998998876 5778887777788877765444 2233 23223333
Q ss_pred hHhHHHHHHhhhhhhhhcCCCCcccccccCCCCcccccCCCchHHHHHHHHHHhhccccccc-c-cc-ccccccccchhc
Q 009276 423 LLGPIGGIILADYYLIQGAKLSIKYLYSLNPNGAYYYSGGYNLVAIMALSIGILPVIPGFLQ-K-VG-LVVTIPNSFVVI 499 (538)
Q Consensus 423 ~l~P~~gI~l~Dy~liRr~~~~~~~Ly~~~~~g~Y~y~~G~N~~ai~A~~~G~~~~~pg~~~-~-~g-~~~~~~~~~~~~ 499 (538)
++=|.+-+.+.=-+ .+|. ++- ++ .-+.+....+.+.+..-.+-.+.. . .. ....+| ...
T Consensus 346 ~iYP~~IvLill~l-~~~~-~~~-------~~------~~y~~~~~~t~i~s~~~~l~~~~~~~~~~~~~~~lP---l~~ 407 (439)
T PRK15433 346 AIYPPCIALVVLSF-TRSW-WHN-------SS------RVIAPPMFISLLFGILDGIKASAFSDILPSWAQRLP---LAE 407 (439)
T ss_pred HHhHHHHHHHHHHH-HHHH-hCC-------CC------ceehHHHHHHHHHHHHHHHHhcchhhHHHHHHHhCC---ccc
Confidence 45565555544332 2331 210 01 123345566666665543221100 0 00 011122 234
Q ss_pred cchhHHHHHHHHHHHHHHHhhccCCCC
Q 009276 500 YNNAWFFSFFLAGFVYWVLSLLRGKQN 526 (538)
Q Consensus 500 ~~~s~~~g~~vs~vvY~~l~~~~~~~~ 526 (538)
.+++|++=.++++++=+++.|..+||-
T Consensus 408 ~gl~W~~Pa~i~~ii~~~~~~~~~~~~ 434 (439)
T PRK15433 408 QGLAWLMPTVVMVVLAIIWDRAAGRQV 434 (439)
T ss_pred cCCCcHHHHHHHHHHHHHHHHHcCCCc
Confidence 678898888888888888888887764
No 39
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=97.19 E-value=0.25 Score=50.97 Aligned_cols=116 Identities=16% Similarity=0.179 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccccCC-CcceehhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q 009276 104 GIATVVAANVILLVPLVLTGHPGTKYGI-PFPVLARSSFGIKGAHIPTLLRALVGCGWYGIETWIGGEAVFLLLPKFIKQ 182 (538)
Q Consensus 104 al~aiiiG~~i~~~~~~l~g~~G~k~Gl-~~~v~sR~~FG~~Gs~lp~li~~i~~igW~~v~~~~gg~al~~~l~~~~~~ 182 (538)
+..++++..++-.+.....-..|.|... ++.-.-|..+|.+=+++-.++..+..++=..+...=+|..+++.++
T Consensus 38 s~~gIivs~vlf~~~g~vim~ig~~f~a~~y~~~~~~v~~~~~~ki~d~~iif~lf~~~vVM~AGags~~~e~~~----- 112 (349)
T COG3949 38 SILGIILSTVLFTLSGAVIMTIGKKFNATSYREILKYVSGPKFAKIIDIIIIFFLFSTAVVMLAGAGSLLEEMFG----- 112 (349)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHhC-----
Confidence 4555555555444443333344444332 3344556677665554444333333332222222222223433321
Q ss_pred ccccccCCCCCCCChhHHHHHHHHHHHHHHHHhhc-hhhHHHHHhhhhhHHHHHHHH
Q 009276 183 SSILSQSLPWLGTSPLEFACFIAFWLAQLAIVWKG-IEGIRELEKYSAPILIILTSS 238 (538)
Q Consensus 183 ~~~~~~~~p~~g~t~~~~i~~ii~~~l~~~~~~~G-~~~i~~~~~~~~p~~~v~~i~ 238 (538)
+ +.|++-+++..+.....+.+ .|.+.+...+..|++++....
T Consensus 113 ------------l--P~wiGali~i~~v~i~lfl~~vegi~tvn~iI~P~LIi~l~~ 155 (349)
T COG3949 113 ------------L--PYWIGALIIILLVLILLFLGRVEGIITVNGIITPFLIIILVL 155 (349)
T ss_pred ------------c--cHHHHHHHHHHHHHHHHHHhcccceeeeheeHHHHHHHHHHH
Confidence 1 25888555555555666666 999999999999988776443
No 40
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=97.17 E-value=0.16 Score=55.05 Aligned_cols=118 Identities=20% Similarity=0.256 Sum_probs=76.8
Q ss_pred CcHHHHHHHHHHHHHHHHHH--------HHhhcccccccCCCcceehhhhhccccchHHHHHHHHHHHHHHHHHHHHHHH
Q 009276 99 MAWWQGIATVVAANVILLVP--------LVLTGHPGTKYGIPFPVLARSSFGIKGAHIPTLLRALVGCGWYGIETWIGGE 170 (538)
Q Consensus 99 Ls~~qal~aiiiG~~i~~~~--------~~l~g~~G~k~Gl~~~v~sR~~FG~~Gs~lp~li~~i~~igW~~v~~~~gg~ 170 (538)
++|...++..++..++..-- --.-.+ -.|++.||+-+.|+.||.++.++.+.+..+...+=.-..+.++|+
T Consensus 66 lGW~~G~~~Ll~~~iit~YT~~LL~~~~~~~~~~-~~~r~~~Y~dl~~~afG~~~~~iv~~~~~~~~fg~~v~y~il~~~ 144 (437)
T KOG1303|consen 66 LGWISGIVILLLFAIITLYTATLLSRCWEMHEAV-PGKRRYRYPDLGQAAFGPKGRLLVSVLQYLELFGICVVYIILAGD 144 (437)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-CCccCCChHHHHHHHhCCCceEeeeHHHHHHHHHHHHHHHHHHHH
Confidence 35555566666665554321 111233 344559999999999999998899999999888888888899999
Q ss_pred HHHHHhhhhhhcccccccCCCCCCCChhHHHHHHHHHHHHHHHHhhch-hhHHHHHhhh
Q 009276 171 AVFLLLPKFIKQSSILSQSLPWLGTSPLEFACFIAFWLAQLAIVWKGI-EGIRELEKYS 228 (538)
Q Consensus 171 al~~~l~~~~~~~~~~~~~~p~~g~t~~~~i~~ii~~~l~~~~~~~G~-~~i~~~~~~~ 228 (538)
.+..+.+....... + +. .-..+++++++++++.+... +.+.+..-..
T Consensus 145 ~L~~~~~~~~~~~~----~-----l~--~~~f~iif~~i~~~~s~lp~~~~l~~~S~~~ 192 (437)
T KOG1303|consen 145 NLKALFPIVSLNDN----S-----LD--KQYFIIIFGLIVLPLSQLPNFHSLSYLSLVG 192 (437)
T ss_pred HHHHHHHhcCCccc----c-----cc--ceehhhhHHHHHHHHHHCCCcchhHHHHHHH
Confidence 99888765432110 0 11 11345778888888887543 4444444433
No 41
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=97.15 E-value=0.34 Score=52.04 Aligned_cols=74 Identities=15% Similarity=0.048 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccccccCCCcceehhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009276 102 WQGIATVVAANVILLVPLVLTGHPGTKYGIPFPVLARSSFGIKGAHIPTLLRALVGCGWYGIETWIGGEAVFLL 175 (538)
Q Consensus 102 ~qal~aiiiG~~i~~~~~~l~g~~G~k~Gl~~~v~sR~~FG~~Gs~lp~li~~i~~igW~~v~~~~gg~al~~~ 175 (538)
++-+..+++.++...++=.++++.|..+|.+....+|-.|+.+=+++-.+.-.+..+.-.--|..-++.+++.+
T Consensus 48 y~ll~vills~l~~~~~Q~~~arLgivTG~~laq~ir~~y~~~~~~~~~~~~~i~~~at~iae~~G~aial~ll 121 (416)
T COG1914 48 YSLLWVILLSNLMAYILQELSARLGIVTGKGLAEAIRERYLPGLGILLWILAEIAGIATDIAEVAGIAIALNLL 121 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888899998999999999999999999999999988766655555555555555555544444444443
No 42
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=97.15 E-value=0.11 Score=55.52 Aligned_cols=117 Identities=15% Similarity=0.057 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHHHHHh----hcccccccCCCcceehhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 009276 104 GIATVVAANVILLVPLVL----TGHPGTKYGIPFPVLARSSFGIKGAHIPTLLRALVGCGWYGIETWIGGEAVFLLLPKF 179 (538)
Q Consensus 104 al~aiiiG~~i~~~~~~l----~g~~G~k~Gl~~~v~sR~~FG~~Gs~lp~li~~i~~igW~~v~~~~gg~al~~~l~~~ 179 (538)
++++.+++.++..++.++ .+..=++.|= .....|..||.+-+.+-.....+......+..+..+++.+...++
T Consensus 32 ~~~~~~i~~~~~~l~~a~~~~el~~~~p~~GG-~y~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 108 (426)
T PF13520_consen 32 AILAWIIAALLFFLPIALSYAELSSAYPSAGG-IYVWVSRAFGPFWGFIVGWLYWVAYILSLASVASSFASYLLSLFG-- 108 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTTSSTT-HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTT--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCcCe-eeehhhhcccccchhcccceeEEEeeccccccccchhhhhhhccc--
Confidence 555555655554222222 2333344443 446667778887777766666666665555555444444433322
Q ss_pred hhcccccccCCCCCCCChhHHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHHH
Q 009276 180 IKQSSILSQSLPWLGTSPLEFACFIAFWLAQLAIVWKGIEGIRELEKYSAPILI 233 (538)
Q Consensus 180 ~~~~~~~~~~~p~~g~t~~~~i~~ii~~~l~~~~~~~G~~~i~~~~~~~~p~~~ 233 (538)
+.. + +.+...++..+++.++...+..+|.|...|++++...+..
T Consensus 109 -~~~---~------~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i 152 (426)
T PF13520_consen 109 -PDL---N------PSPWPQFLIAIILILLFTLLNLLGIKLSGKIQNILTVIKI 152 (426)
T ss_dssp -GGG---T------CSHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred -ccc---c------cccchheeeeecccccceEeeechhhhhhhhhhhhhhhhh
Confidence 110 0 1011223333344455567788999999999998876655
No 43
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=97.12 E-value=0.16 Score=52.56 Aligned_cols=123 Identities=20% Similarity=0.138 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccccc-cCCCcceehhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 009276 103 QGIATVVAANVILLVPLVLTGHPGTK-YGIPFPVLARSSFGIKGAHIPTLLRALVGCGWYGIETWIGGEAVFLLLPKFIK 181 (538)
Q Consensus 103 qal~aiiiG~~i~~~~~~l~g~~G~k-~Gl~~~v~sR~~FG~~Gs~lp~li~~i~~igW~~v~~~~gg~al~~~l~~~~~ 181 (538)
++.+++++|.+++..+..+..+...| -|-+....+|..+|.+-.++-.++-.+..+...+...-..++.+... .+|
T Consensus 33 d~Wi~~ll~~~~~l~~~~l~~~l~~~~p~~~l~~~~~~~~Gk~lg~ii~~~~~l~~l~~~~~~lr~~~~~i~~~---~lp 109 (320)
T PF03845_consen 33 DAWISVLLGGLIGLLLALLIYYLLKRFPGKTLVEISEKLFGKWLGKIINLLYILYFLLISALVLREFSEFIKTY---LLP 109 (320)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcC
Confidence 46778888888888888888888777 67777888899999876666555554444444444333322222221 111
Q ss_pred cccccccCCCCCCCChhHHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHHHHHHHHHHHH
Q 009276 182 QSSILSQSLPWLGTSPLEFACFIAFWLAQLAIVWKGIEGIRELEKYSAPILIILTSSFLFW 242 (538)
Q Consensus 182 ~~~~~~~~~p~~g~t~~~~i~~ii~~~l~~~~~~~G~~~i~~~~~~~~p~~~v~~i~l~~~ 242 (538)
+ | +.++....+.++....+..|.|.+-|...+..|...+..+.+...
T Consensus 110 ------~-------T-P~~~i~~~~ll~~~y~a~~G~e~i~R~~~~~~~~~~i~~~~i~~~ 156 (320)
T PF03845_consen 110 ------E-------T-PIWVIILLFLLVAAYAARKGIEVIARVAEILFPIFLILLLLILLL 156 (320)
T ss_pred ------c-------C-CHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 2 245555556677777889999999998888888776665554443
No 44
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters. This model describes the Nramp metal ion transporter family. Historically, in mammals these proteins have been functionally characterized as proteins involved in the host pathogen resistance, hence the name - NRAMP. At least two isoforms Nramp1 and Nramp2 have been identified. However the exact mechanism of pathogen resistance was unclear, until it was demonstrated by expression cloning and electrophysiological techniques that this protein was a metal ion transporter. It was also independently demonstrated that a microcytic anemia (mk) locus in mouse, encodes a metal ion transporter (DCT1 or Nramp2). The transporter has a broad range of substrate specificity that include Fe+2, Zn+2, Mn+2, Co+2, Cd+2, Cu+2, Ni+2 and Pb+2. The uptake of these metal ions is coupled to proton symport. Metal ions are essential cofactors in a number of biological process including, oxidative phosphorylation, gene
Probab=97.05 E-value=0.61 Score=49.86 Aligned_cols=49 Identities=14% Similarity=0.162 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccccCCCcceehhhhhccccchHHHHH
Q 009276 104 GIATVVAANVILLVPLVLTGHPGTKYGIPFPVLARSSFGIKGAHIPTLL 152 (538)
Q Consensus 104 al~aiiiG~~i~~~~~~l~g~~G~k~Gl~~~v~sR~~FG~~Gs~lp~li 152 (538)
-++++++++++..++--+.++.|..+|.+-...+|..|+.++.+.--++
T Consensus 37 LLW~llls~~~~~~~Q~~aaRlg~vTg~~l~~~~r~~~~~~~~~~~~~~ 85 (390)
T TIGR01197 37 LLWVLLLSNIMALLLQRLCARLGVVTGLDLAEVCREHYPKVPRITLWIL 85 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHheeecCCCHHHHHHHHCCCchHHHHHHH
Confidence 3778888999989999999999999999999999999998666543333
No 45
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=97.04 E-value=0.71 Score=50.41 Aligned_cols=116 Identities=18% Similarity=0.193 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccccC---CCcceehhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 009276 104 GIATVVAANVILLVPLVLTGHPGTKYG---IPFPVLARSSFGIKGAHIPTLLRALVGCGWYGIETWIGGEAVFLLLPKFI 180 (538)
Q Consensus 104 al~aiiiG~~i~~~~~~l~g~~G~k~G---l~~~v~sR~~FG~~Gs~lp~li~~i~~igW~~v~~~~gg~al~~~l~~~~ 180 (538)
.+++-+++.++........+..+.++- =+.....|..||.+-+.+-....++.. |.+.-. . ..++...+...+
T Consensus 37 ~l~~w~i~~~~~~~~al~~aeL~s~~P~~gGG~y~y~~~~fG~~~gf~~gw~~w~~~--~~~~~~-~-~~~~~~~~~~~~ 112 (468)
T TIGR03810 37 VLIGWVITGVGMLALAFSFQNLANKKPELDGGVYSYAKAGFGPFMGFISAWGYWLSA--WLGNVA-Y-ATLLFSTLGYFF 112 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhhHHhHcCcHHHHHHHHHHHHHH--HHHHHH-H-HHHHHHHHHHhc
Confidence 344455555554444555566665543 256788999999877666555544332 111111 1 111112222222
Q ss_pred hcccccccCCCCCCCChhHHH-HHHHHHHHHHHHHhhchhhHHHHHhhhhhHH
Q 009276 181 KQSSILSQSLPWLGTSPLEFA-CFIAFWLAQLAIVWKGIEGIRELEKYSAPIL 232 (538)
Q Consensus 181 ~~~~~~~~~~p~~g~t~~~~i-~~ii~~~l~~~~~~~G~~~i~~~~~~~~p~~ 232 (538)
|... . +.+...++ +.++++++. .+..+|.|...+++.+.....
T Consensus 113 p~~~---~-----~~~~~~~~~~~~~~~~~~-~ln~~Gv~~~~~i~~i~~~~k 156 (468)
T TIGR03810 113 PIFG---G-----GNNPPSIIGASVLLWCVH-FLVLRGVEGAAFINTITTIAK 156 (468)
T ss_pred cccc---C-----CCcHHHHHHHHHHHHHHH-HHHHhCHHHHHHHHHHHHHHH
Confidence 2210 0 11111222 333444433 455689999999998876543
No 46
>PRK10483 tryptophan permease; Provisional
Probab=96.88 E-value=0.5 Score=50.82 Aligned_cols=184 Identities=10% Similarity=0.120 Sum_probs=96.4
Q ss_pred ccCcHHHHHHHHHHHHHHH--HHHHHhhcccccccCCCcceehhhhhccccchHHHHHHHHHHHHHHHHHHHH--HHHHH
Q 009276 97 LGMAWWQGIATVVAANVIL--LVPLVLTGHPGTKYGIPFPVLARSSFGIKGAHIPTLLRALVGCGWYGIETWI--GGEAV 172 (538)
Q Consensus 97 ~GLs~~qal~aiiiG~~i~--~~~~~l~g~~G~k~Gl~~~v~sR~~FG~~Gs~lp~li~~i~~igW~~v~~~~--gg~al 172 (538)
-+.++..+++.+++--++- ..++.+=...-.+.|.++..++|...|..|..+-.+...+ +.+.-.-+|+ +|+.+
T Consensus 37 a~~GF~~s~~~l~~~W~~M~~taLlllEv~l~~~~g~~~~tma~~~LG~~g~~i~~~s~lf--l~Y~Ll~AYisg~g~il 114 (414)
T PRK10483 37 SGAWFFWSMAALIFTWFCMLHSGLMILEANLNYRIGSSFDTITKDLLGKGWNVVNGISIAF--VLYILTYAYISASGSIL 114 (414)
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHcChHHHHHHHHHHHH--HHHHHHHHHHhCcHHHH
Confidence 3666665555444332221 1222222223446788999999999999887653332222 1222223333 33344
Q ss_pred HHHhhhhhhcccccccCCCCCCCChhHHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHHHHHHHHHHHHHHHhcCCCcc
Q 009276 173 FLLLPKFIKQSSILSQSLPWLGTSPLEFACFIAFWLAQLAIVWKGIEGIRELEKYSAPILIILTSSFLFWAYVNAGGFGH 252 (538)
Q Consensus 173 ~~~l~~~~~~~~~~~~~~p~~g~t~~~~i~~ii~~~l~~~~~~~G~~~i~~~~~~~~p~~~v~~i~l~~~~~~~~~g~~~ 252 (538)
+..++. . +.+...+++-++|.++...+.+.|-+.++|++++..-..++.++.++...+.+.. ...
T Consensus 115 ~~~l~~-~-------------~~~i~~~~~~llF~~~~~~iv~~gt~~vd~~n~~l~~~~i~~f~~~~~~l~~~i~-~~~ 179 (414)
T PRK10483 115 HHTFAE-M-------------SLNVPARAAGFGFALLVAFVVWLSTKAVSRMTAIVLGAKVITFFLTFGSLLGHVQ-PAT 179 (414)
T ss_pred HHHHHh-c-------------CCCCcHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-HHH
Confidence 443322 1 2222356788888888888999999999999998876666655544433322211 111
Q ss_pred cccccccCCchhhHHHHHHHHHHHHHHHHhHhccccccccccccCCcc
Q 009276 253 MLSKSSKLSSSEFWSLFFPSLTANISFWATVALNIPDFTRYAKSQNDQ 300 (538)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~ai~~~ig~~~~~~~~~sDysRy~k~~~~~ 300 (538)
+.+.... . ...|...+.++-..+- -.+.....|...||.+++.+.
T Consensus 180 L~~~~~~-~-~~~~~~~~~alPvl~~-SFgfh~iIPsl~~y~~~d~~k 224 (414)
T PRK10483 180 LFNVAES-N-ASYAPYLLMTLPFCLA-SFGYHGNVPSLMKYYGKDPKT 224 (414)
T ss_pred Hhccccc-c-chhHHHHHHHHHHHHh-hccCCCcchHHHHHhCcCHHH
Confidence 2221111 1 1112222233332221 124456788889998865443
No 47
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=96.84 E-value=0.99 Score=48.99 Aligned_cols=113 Identities=12% Similarity=0.058 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccccccCC--CcceehhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 009276 103 QGIATVVAANVILLVPLVLTGHPGTKYGI--PFPVLARSSFGIKGAHIPTLLRALVGCGWYGIETWIGGEAVFLLLPKFI 180 (538)
Q Consensus 103 qal~aiiiG~~i~~~~~~l~g~~G~k~Gl--~~~v~sR~~FG~~Gs~lp~li~~i~~igW~~v~~~~gg~al~~~l~~~~ 180 (538)
.++++-+++.++..+.+...+..+.++-. +.....|..||..-..+.....++..+.....+....+. .++...
T Consensus 26 ~~ll~~~i~gi~~~~~al~~aEL~s~~P~~Gg~y~y~~~~~G~~~gf~~gw~~~~~~~~~~~~~~~~~~~----~~~~~~ 101 (446)
T PRK10197 26 AVLLAYLFAGLLVVMIMRMLAEMAVATPDTGSFSTYADKAIGRWAGYTIGWLYWWFWVLVIPLEANIAAM----ILHSWV 101 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhcc
Confidence 46778888887777776667777755433 567888899998777666666665555444444322222 222111
Q ss_pred hcccccccCCCCCCCChhHHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHHH
Q 009276 181 KQSSILSQSLPWLGTSPLEFACFIAFWLAQLAIVWKGIEGIRELEKYSAPILI 233 (538)
Q Consensus 181 ~~~~~~~~~~p~~g~t~~~~i~~ii~~~l~~~~~~~G~~~i~~~~~~~~p~~~ 233 (538)
+ +. ..++..+++.++.+.+-.+|.|...++|.+...+-+
T Consensus 102 ~------------~~--~~~~~~~~~l~~~~~lN~~gv~~~~~i~~~~~~~ki 140 (446)
T PRK10197 102 P------------GI--PIWLFSLVITLALTGSNLLSVKNYGEFEFWLALCKV 140 (446)
T ss_pred c------------cC--cHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHH
Confidence 1 11 134444455555566778899999999988775433
No 48
>PRK09664 tryptophan permease TnaB; Provisional
Probab=96.79 E-value=0.9 Score=48.90 Aligned_cols=187 Identities=13% Similarity=0.132 Sum_probs=93.0
Q ss_pred ccCcHHHHHHHHHHHHHHH--HHHHHhhcccccccCCCcceehhhhhccccchHHHHHHHHHHHHHHHHHHH--HHHHHH
Q 009276 97 LGMAWWQGIATVVAANVIL--LVPLVLTGHPGTKYGIPFPVLARSSFGIKGAHIPTLLRALVGCGWYGIETW--IGGEAV 172 (538)
Q Consensus 97 ~GLs~~qal~aiiiG~~i~--~~~~~l~g~~G~k~Gl~~~v~sR~~FG~~Gs~lp~li~~i~~igW~~v~~~--~gg~al 172 (538)
-+.++..+++..++--++- ..++.+=...-.+.|.++.-++|...|..|..+-.+...+.. +.-.-+| -+|+-+
T Consensus 35 a~~Gf~~s~~ll~~~w~~M~~t~LlllEv~l~~~~g~~l~tma~~~LG~~g~~i~~~~~~fl~--Y~Ll~AYisggG~il 112 (415)
T PRK09664 35 AGAWFFWGAFILIIAWFSMLHSGLLLLEANLNYPVGSSFNTITKDLIGNTWNIISGITVAFVL--YILTYAYISANGAII 112 (415)
T ss_pred hcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHcChHHHHHHHHHHHHHH--HHHHHHHHhccHHHH
Confidence 3566655554443322221 122222223344679999999999999988876555443222 1111222 234444
Q ss_pred HHHhhhhhhcccccccCCCCCCCChhHHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHHHHHHHHHHHHHHHhcCCCcc
Q 009276 173 FLLLPKFIKQSSILSQSLPWLGTSPLEFACFIAFWLAQLAIVWKGIEGIRELEKYSAPILIILTSSFLFWAYVNAGGFGH 252 (538)
Q Consensus 173 ~~~l~~~~~~~~~~~~~~p~~g~t~~~~i~~ii~~~l~~~~~~~G~~~i~~~~~~~~p~~~v~~i~l~~~~~~~~~g~~~ 252 (538)
+..++... +.+.....+-++|.++...+.+.|-+.++|++++..-..++.++.++....-+.. ...
T Consensus 113 ~~~l~~~~-------------~~~i~~~~~~llF~~~~~~~v~~gt~~vd~~nr~l~~~~ii~f~~~~~~l~~~i~-~~~ 178 (415)
T PRK09664 113 SETISMNL-------------GYHANPRIVGICTAIFVASVLWISSLAASRITSLFLGLKIISFVIVFGSFFFQVD-YSI 178 (415)
T ss_pred HHHHhhhc-------------cCCCcHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHhhccc-HHH
Confidence 44443211 1121234444777777788889999999999998875555555443332222111 011
Q ss_pred cccccccCCchhhHHHHHHHHHHHHHHHHhHhccccccccccccCCcc
Q 009276 253 MLSKSSKLSSSEFWSLFFPSLTANISFWATVALNIPDFTRYAKSQNDQ 300 (538)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~ai~~~ig~~~~~~~~~sDysRy~k~~~~~ 300 (538)
+.+.+........+.....++-..+- -.+.....|...||.+++.+.
T Consensus 179 L~~~~~~~~~~~~~~~i~~alPVl~~-SFgfh~iIPsl~~y~~~d~~~ 225 (415)
T PRK09664 179 LRDATSTTAGTSYFPYIFMALPVCLA-SFGFHGNIPSLIICYGKRKDK 225 (415)
T ss_pred HhcCccccccchHHHHHHHHHHHHHH-hhhCCCcchHHHHHhCccHHH
Confidence 11111110000111122223333222 124467788889998765433
No 49
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=96.79 E-value=0.017 Score=61.82 Aligned_cols=136 Identities=12% Similarity=0.169 Sum_probs=71.5
Q ss_pred hccCcHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcceehhhhhcccc--chHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009276 96 DLGMAWWQGIATVVAANVILLVPLVLTGHPGTKYGIPFPVLARSSFGIKG--AHIPTLLRALVGCGWYGIETWIGGEAVF 173 (538)
Q Consensus 96 ~~GLs~~qal~aiiiG~~i~~~~~~l~g~~G~k~Gl~~~v~sR~~FG~~G--s~lp~li~~i~~igW~~v~~~~gg~al~ 173 (538)
..|++.....+...++..+...+. ..+.-.....+.+..-|.-||.+. ..+..+...+..+.|.+.|..-+++.++
T Consensus 36 ~~G~~~~~~~~~~~~~~~~~~~~~--~~~~r~~~~~T~~e~~~~Ryg~~~~~~~~~~i~~i~~~~~~~~~q~~~~~~~~~ 113 (406)
T PF00474_consen 36 SYGISGLWYAIGYAIGFLLFALFF--APRLRRSGAVTIPEYLEKRYGSKALLRILAAIIIIVFMIPYLAAQLVGGGALLS 113 (406)
T ss_dssp HT-GGGGHHHHHHHHHHHHHHHHT--HHHHHHTT--SHHHHHHHHT-HHH-HHHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred cCCcceeeeccccchhHHHHHHHH--HHhhcccchhhhhhhhhhhcCCchhhhhhcccccchhhhhhhhccccccccchh
Confidence 335544333333344443333222 222334455667778888888877 4455556667778999999888777776
Q ss_pred HHhhhhhhcccccccCCCCCCCChhHHHHHHHHHHH-HHHHHhhchhhHHHHHhhhhhHHHHHHHHHHHHHHHhcCCCcc
Q 009276 174 LLLPKFIKQSSILSQSLPWLGTSPLEFACFIAFWLA-QLAIVWKGIEGIRELEKYSAPILIILTSSFLFWAYVNAGGFGH 252 (538)
Q Consensus 174 ~~l~~~~~~~~~~~~~~p~~g~t~~~~i~~ii~~~l-~~~~~~~G~~~i~~~~~~~~p~~~v~~i~l~~~~~~~~~g~~~ 252 (538)
.+++ ++ ...+.++..++ .+...+-|++..-+.+.+...++.+..+.+.++.+.+.||.+.
T Consensus 114 ~~~g-----------------i~--~~~~~~i~~~i~~iYt~~GGl~av~~td~iQ~~i~~~~~~~~~~~~~~~~gg~~~ 174 (406)
T PF00474_consen 114 VLFG-----------------IP--YNTAILIVGVIVIIYTFFGGLRAVAWTDFIQGVIMIIGAIVVLIFVLSAVGGFGG 174 (406)
T ss_dssp HHTT---------------------HHHHHHHHHHHHHHTTCTT------SHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred hccc-----------------hh--hhHHHHHHHHHHHHhhhhhhHhhhhHHHHHHHHHHHHHHHHhhhccchhcCCchh
Confidence 6543 11 12233333333 3344567899988888888777666666666666666665443
No 50
>PRK09395 actP acetate permease; Provisional
Probab=96.64 E-value=1.6 Score=48.79 Aligned_cols=135 Identities=12% Similarity=0.087 Sum_probs=73.7
Q ss_pred hccCcHHHHHHHHHHHHHHHHHHHHhhcccccccC-CCcceehhhhhccccch-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009276 96 DLGMAWWQGIATVVAANVILLVPLVLTGHPGTKYG-IPFPVLARSSFGIKGAH-IPTLLRALVGCGWYGIETWIGGEAVF 173 (538)
Q Consensus 96 ~~GLs~~qal~aiiiG~~i~~~~~~l~g~~G~k~G-l~~~v~sR~~FG~~Gs~-lp~li~~i~~igW~~v~~~~gg~al~ 173 (538)
..|++.+...+...+|..+...+. +..=.|.| .+.+..-+.-||.+..+ +-+++..+..+.+.+.|..-+|..++
T Consensus 99 ~~G~~~~~~~~~~~~g~~~~~~~~---~~~~r~~g~~T~~d~l~~Rygs~~~r~l~av~~iv~~~~yl~~q~~g~g~il~ 175 (551)
T PRK09395 99 TSGYDGLIYSIGFLVGWPIILFLI---AERLRNLGKYTFADVASYRLKQGPIRTLSACGSLVVVALYLIAQMVGAGKLIQ 175 (551)
T ss_pred HhCHHHHHHHHHHHHHHHHHHHHH---HHHHhhCCCccHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346655444444455544433221 22112333 33444445566654333 44556666777888888877777666
Q ss_pred HHhhhhhhcccccccCCCCCCCChhHHHHHHHHHHHH-HHHHhhchhhHHHHHhhhhhHHHHHHHHHHHHHHHhcC-CCc
Q 009276 174 LLLPKFIKQSSILSQSLPWLGTSPLEFACFIAFWLAQ-LAIVWKGIEGIRELEKYSAPILIILTSSFLFWAYVNAG-GFG 251 (538)
Q Consensus 174 ~~l~~~~~~~~~~~~~~p~~g~t~~~~i~~ii~~~l~-~~~~~~G~~~i~~~~~~~~p~~~v~~i~l~~~~~~~~~-g~~ 251 (538)
.+++ ++ .+.+.++..++. +-...-|++..-+..-+...++++..+.+..+.+.+.| |++
T Consensus 176 ~~~g-----------------i~--~~~~ili~~~i~~iYt~~GGm~av~~TD~iQ~iim~~g~ii~~~~~~~~~ggg~~ 236 (551)
T PRK09395 176 LLFG-----------------LN--YHVAVVLVGVLMMVYVLFGGMLATTWVQIIKAVLLLSGATFMAFMVMKHVGFSFE 236 (551)
T ss_pred HHhC-----------------CC--HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH
Confidence 5542 11 233444444443 34556789999888888877766655555444555554 443
Q ss_pred c
Q 009276 252 H 252 (538)
Q Consensus 252 ~ 252 (538)
+
T Consensus 237 ~ 237 (551)
T PRK09395 237 N 237 (551)
T ss_pred H
Confidence 3
No 51
>PRK10249 phenylalanine transporter; Provisional
Probab=96.64 E-value=1.4 Score=47.99 Aligned_cols=111 Identities=13% Similarity=0.074 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccccccCC--CcceehhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 009276 103 QGIATVVAANVILLVPLVLTGHPGTKYGI--PFPVLARSSFGIKGAHIPTLLRALVGCGWYGIETWIGGEAVFLLLPKFI 180 (538)
Q Consensus 103 qal~aiiiG~~i~~~~~~l~g~~G~k~Gl--~~~v~sR~~FG~~Gs~lp~li~~i~~igW~~v~~~~gg~al~~~l~~~~ 180 (538)
.++++-+++.++....+...+.++.++-. +.....|..||.+-+.+-....++. |..... ....+....++..+
T Consensus 55 ~~~l~~li~~~~~~~~~~~~aEl~~~~P~~Gg~~~y~~~~~g~~~gf~~gw~~~~~---~~~~~~-~~~~a~~~~~~~~~ 130 (458)
T PRK10249 55 AVLLGYGVAGIIAFLIMRQLGEMVVEEPVSGSFAHFAYKYWGPFAGFLSGWNYWVM---FVLVGM-AELTAAGIYMQYWF 130 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhChHHHHHHHHHHHHH---HHHHHH-HHHHHHHHHHHHcC
Confidence 35667777777666666666666644332 4556778888876555544443332 211111 00111111112111
Q ss_pred hcccccccCCCCCCCChhHHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhH
Q 009276 181 KQSSILSQSLPWLGTSPLEFACFIAFWLAQLAIVWKGIEGIRELEKYSAPI 231 (538)
Q Consensus 181 ~~~~~~~~~~p~~g~t~~~~i~~ii~~~l~~~~~~~G~~~i~~~~~~~~p~ 231 (538)
|. . ..++..+++.++...+-.+|.|...++|.+...+
T Consensus 131 ~~-------~-------~~~~~~~~~~~l~~~lN~~gv~~~~~i~~~~~~i 167 (458)
T PRK10249 131 PD-------V-------PTWIWAAAFFIIINAVNLVNVRLYGETEFWFALI 167 (458)
T ss_pred Cc-------C-------cHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHH
Confidence 10 1 1344445555666777889999999998876533
No 52
>PTZ00206 amino acid transporter; Provisional
Probab=96.47 E-value=1.3 Score=48.53 Aligned_cols=76 Identities=14% Similarity=0.106 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccccccC-CCcceehhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009276 102 WQGIATVVAANVILLVPLVLTGHPGTKYG-IPFPVLARSSFGIKGAHIPTLLRALVGCGWYGIETWIGGEAVFLLLP 177 (538)
Q Consensus 102 ~qal~aiiiG~~i~~~~~~l~g~~G~k~G-l~~~v~sR~~FG~~Gs~lp~li~~i~~igW~~v~~~~gg~al~~~l~ 177 (538)
..+++.+++..++...-+.+..+...+.+ .++.-+.|..||.+|.++..+...+.++|-...-..+.|+.+..++.
T Consensus 91 v~giillil~a~ls~ys~~lL~~~~~~~~~~sY~~la~~~~G~~g~~~v~~~~~~~~~G~cv~YlIiigd~l~~~l~ 167 (467)
T PTZ00206 91 VMAMIYLIIITAMTIFSIYALGVAADKTNIRTYEGVARVLLGPWGSYYVAATRAFHGFSACVAYVISVGDILSATLK 167 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33444444444333332333344444443 38889999999999999999988888888776666777777766553
No 53
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=96.44 E-value=1 Score=48.44 Aligned_cols=47 Identities=15% Similarity=0.157 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHHHHHHHHHHHHHHHh
Q 009276 200 FACFIAFWLAQLAIVWKGIEGIRELEKYSAPILIILTSSFLFWAYVN 246 (538)
Q Consensus 200 ~i~~ii~~~l~~~~~~~G~~~i~~~~~~~~p~~~v~~i~l~~~~~~~ 246 (538)
|+.-+++.++..++.+-|.|.+.++.....|++.++-+...++.+..
T Consensus 140 ~~~gi~l~~l~~~vi~GGikrI~~v~~~lVP~Ma~~Yi~~~l~ii~~ 186 (416)
T PF01235_consen 140 WITGIILAILVALVIFGGIKRIAKVSEKLVPFMAILYILGGLIIIII 186 (416)
T ss_pred HHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44445556666777889999999999999999887766655554443
No 54
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=96.42 E-value=1.9 Score=47.02 Aligned_cols=110 Identities=15% Similarity=0.123 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHHHhhccc---ccccCCCcceehhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 009276 104 GIATVVAANVILLVPLVLTGHP---GTKYGIPFPVLARSSFGIKGAHIPTLLRALVGCGWYGIETWIGGEAVFLLLPKFI 180 (538)
Q Consensus 104 al~aiiiG~~i~~~~~~l~g~~---G~k~Gl~~~v~sR~~FG~~Gs~lp~li~~i~~igW~~v~~~~gg~al~~~l~~~~ 180 (538)
++++-+++.++........+.. +.++| +.....|..||...+.+....+.+ .|...... -..++...+...+
T Consensus 55 ~i~~~~i~~i~~~~~~~s~aEl~s~~~~~~-~~~~ya~~~~g~~~gf~~gW~~~~---~~~~~~~a-~~~a~~~~~~~~~ 129 (469)
T PRK11049 55 IIFVYMIIGFMLFFVMRAMGELLLSNLEYK-SFSDFASDLLGPWAGYFTGWTYWF---CWVVTGIA-DVVAITAYAQFWF 129 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-cHHHHHHHHhCcHHHHHHHHHHHH---HHHHHHHH-HHHHHHHHHHHhc
Confidence 4555555554443333333333 46666 566788888987666554443332 33111000 0111222222211
Q ss_pred hcccccccCCCCCCCChhHHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHH
Q 009276 181 KQSSILSQSLPWLGTSPLEFACFIAFWLAQLAIVWKGIEGIRELEKYSAPIL 232 (538)
Q Consensus 181 ~~~~~~~~~~p~~g~t~~~~i~~ii~~~l~~~~~~~G~~~i~~~~~~~~p~~ 232 (538)
|. .. .+...+++.++.+.+-.+|.|...++|.+...+.
T Consensus 130 p~------------~~--~~~~~~~~~~~~~~iN~~g~~~~~~i~~~~~~~k 167 (469)
T PRK11049 130 PD------------LS--DWVASLAVVLLLLSLNLATVKMFGEMEFWFAMIK 167 (469)
T ss_pred CC------------Cc--HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 21 11 2343344445556778899999999998866543
No 55
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=96.27 E-value=2.2 Score=46.06 Aligned_cols=186 Identities=14% Similarity=0.156 Sum_probs=114.9
Q ss_pred cCcHHHHHHHHHHHHHHHHHHHHhhcccccccCC---CcceehhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009276 98 GMAWWQGIATVVAANVILLVPLVLTGHPGTKYGI---PFPVLARSSFGIKGAHIPTLLRALVGCGWYGIETWIGGEAVFL 174 (538)
Q Consensus 98 GLs~~qal~aiiiG~~i~~~~~~l~g~~G~k~Gl---~~~v~sR~~FG~~Gs~lp~li~~i~~igW~~v~~~~gg~al~~ 174 (538)
+-++|-.++..++.......-.-+..+.-.+++. ++.-..+..+|.+|..+-.+...+.+.+....=....|+-+..
T Consensus 36 ~~G~~~~l~~l~i~~~~t~~s~~~l~~~~~~~~~~~~~~~~~~~~~~G~~~~~li~~s~~~~~~~~~~aY~~~~g~~l~~ 115 (415)
T COG0814 36 GGGFWPGLLLLIIAWPLTYLSLLLLLEALLSSPNGKASITSLVEDYLGKKGGILIGLSYFFALYGLLVAYIVGIGNLLAS 115 (415)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHhcchhHHHH
Confidence 5667777777777776666555555555555544 6788889999999999999988888888777666666777766
Q ss_pred HhhhhhhcccccccCCCCCCCChhHHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHHHHHHHHHHHHHHHhcCCCcccc
Q 009276 175 LLPKFIKQSSILSQSLPWLGTSPLEFACFIAFWLAQLAIVWKGIEGIRELEKYSAPILIILTSSFLFWAYVNAGGFGHML 254 (538)
Q Consensus 175 ~l~~~~~~~~~~~~~~p~~g~t~~~~i~~ii~~~l~~~~~~~G~~~i~~~~~~~~p~~~v~~i~l~~~~~~~~~g~~~~~ 254 (538)
.++..++... ....++.+++..+..++.+.|-+...|..++.....++.++.+..+...+.+. ....
T Consensus 116 ~~~~~~~~~~------------~~r~~~~lif~~~~~~l~~~~~~~~lk~ts~l~~~~v~~~~~l~~~~~~~~~~-~~l~ 182 (415)
T COG0814 116 FLGNQFGLNP------------LPRKLGSLIFALVLAFLSWLGTLAVLKITSLLVFGKVIYLVLLVVYLIPHWNP-ANLF 182 (415)
T ss_pred HHHhhcccCC------------cchHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHhcccCH-HHHh
Confidence 6654332210 12455566666666778999999999999988766655555444443322110 1111
Q ss_pred cccccCCchhhHHHHHHHHHHHHHHHHhHhccccccccccccCCc
Q 009276 255 SKSSKLSSSEFWSLFFPSLTANISFWATVALNIPDFTRYAKSQND 299 (538)
Q Consensus 255 ~~~~~~~~~~~~~~~~~ai~~~ig~~~~~~~~~sDysRy~k~~~~ 299 (538)
..+ ..+ ...|..++.++...+-. .+...|.+-..+|.|++..
T Consensus 183 ~~~-~~~-~~~~~~~~~~ipv~vfs-F~~h~~i~si~~~~~~~~~ 224 (415)
T COG0814 183 ALP-SAS-QSFWKYLLLAIPVFVFS-FGFHGNIPSLVNYMRKNSK 224 (415)
T ss_pred ccc-ccc-hhhHHHHHHHhhHHHhh-hhCCccchHHHHHhccchh
Confidence 111 111 13344444555444322 2445677888888886544
No 56
>PRK10580 proY putative proline-specific permease; Provisional
Probab=96.22 E-value=2.4 Score=46.07 Aligned_cols=112 Identities=11% Similarity=0.075 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccccccCC--CcceehhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 009276 103 QGIATVVAANVILLVPLVLTGHPGTKYGI--PFPVLARSSFGIKGAHIPTLLRALVGCGWYGIETWIGGEAVFLLLPKFI 180 (538)
Q Consensus 103 qal~aiiiG~~i~~~~~~l~g~~G~k~Gl--~~~v~sR~~FG~~Gs~lp~li~~i~~igW~~v~~~~gg~al~~~l~~~~ 180 (538)
.++++.+++.++..+.....+.++.++-. +.....|..||...+.+-.....+ .|..... ....+....++..+
T Consensus 43 ~~~l~~~i~~i~~~~~a~~~aEl~s~~P~~Gg~y~y~~~~~G~~~gf~~gw~~~~---~~~~~~~-~~~~~~~~~~~~~~ 118 (457)
T PRK10580 43 SVLLAYIIGGVAAYIIMRALGEMSVHNPAASSFSRYAQENLGPLAGYITGWTYCF---EILIVAI-ADVTAFGIYMGVWF 118 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCcHHHHHHHHHHHH---HHHHHHH-HHHHHHHHHHHHhC
Confidence 35677777776666555556666654332 233456777877655544433322 3321111 11112222222111
Q ss_pred hcccccccCCCCCCCChhHHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHH
Q 009276 181 KQSSILSQSLPWLGTSPLEFACFIAFWLAQLAIVWKGIEGIRELEKYSAPIL 232 (538)
Q Consensus 181 ~~~~~~~~~~p~~g~t~~~~i~~ii~~~l~~~~~~~G~~~i~~~~~~~~p~~ 232 (538)
|. . ..++..+++.++...+-.+|.|...++|.+...+.
T Consensus 119 ~~-------~-------~~~~~~~~~~~l~~~ln~~gv~~~~~~~~~~~~~~ 156 (457)
T PRK10580 119 PT-------V-------PHWIWVLSVVLIICAVNLMSVKVFGELEFWFSFFK 156 (457)
T ss_pred CC-------C-------ChHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHH
Confidence 11 1 12333444455566777889999999998765543
No 57
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=96.19 E-value=2.4 Score=45.78 Aligned_cols=31 Identities=13% Similarity=0.284 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHhhchhhHHHHHhhhhhHHH
Q 009276 202 CFIAFWLAQLAIVWKGIEGIRELEKYSAPILI 233 (538)
Q Consensus 202 ~~ii~~~l~~~~~~~G~~~i~~~~~~~~p~~~ 233 (538)
+.+++| +.+.+-.+|.|...+++.+...+.+
T Consensus 125 ~~~i~~-~~~~ln~~gvk~~~~i~~i~~~~~l 155 (435)
T PRK10435 125 CIAIVW-VFTFVNMLGGTWVSRLTTIGLVLVL 155 (435)
T ss_pred HHHHHH-HHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 334444 4455677899998888877665443
No 58
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=96.14 E-value=2.6 Score=45.63 Aligned_cols=22 Identities=9% Similarity=0.155 Sum_probs=14.7
Q ss_pred HHHHhhchhhHHHHHhhhhhHH
Q 009276 211 LAIVWKGIEGIRELEKYSAPIL 232 (538)
Q Consensus 211 ~~~~~~G~~~i~~~~~~~~p~~ 232 (538)
..+..+|.|...|++++.....
T Consensus 139 ~~ln~~gv~~~~~v~~~~~~~~ 160 (445)
T PRK11357 139 MLLHLRSVEGGAAFQTLITIAK 160 (445)
T ss_pred HHHHHhhhhHHHHHHHHHHHHH
Confidence 3455677777778888776443
No 59
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=96.13 E-value=2.5 Score=45.44 Aligned_cols=180 Identities=12% Similarity=0.106 Sum_probs=95.2
Q ss_pred cCcHHHHHHHHHHHHHHHHH--HHHhhcccccccCCCcceehhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009276 98 GMAWWQGIATVVAANVILLV--PLVLTGHPGTKYGIPFPVLARSSFGIKGAHIPTLLRALVGCGWYGIETWIGGEAVFLL 175 (538)
Q Consensus 98 GLs~~qal~aiiiG~~i~~~--~~~l~g~~G~k~Gl~~~v~sR~~FG~~Gs~lp~li~~i~~igW~~v~~~~gg~al~~~ 175 (538)
+.+++.+++.+++.-.+... ...+=-....+.|.+..-++|..+|.+|..+-.+...+....=...-..-+|+.+...
T Consensus 30 ~~Gf~~~~~~li~~w~~m~~t~l~l~Ev~~~~~~~~~~~~~a~~~LG~~g~~i~~~~y~fl~y~ll~AYisg~g~il~~~ 109 (403)
T PRK15132 30 GVGFSVTLILLIGLWALMCYTALLLLEVYQHVPADTGLGTLAKRYLGRYGQWLTGFSMMFLMYALTAAYISGAGELLASS 109 (403)
T ss_pred hChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHH
Confidence 56777777666655432221 1211112244667888999999999999987666655433222222122233444444
Q ss_pred hhhhhhcccccccCCCCCCCChhHHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHHHHHHHHHHHHHHHhcCCCccccc
Q 009276 176 LPKFIKQSSILSQSLPWLGTSPLEFACFIAFWLAQLAIVWKGIEGIRELEKYSAPILIILTSSFLFWAYVNAGGFGHMLS 255 (538)
Q Consensus 176 l~~~~~~~~~~~~~~p~~g~t~~~~i~~ii~~~l~~~~~~~G~~~i~~~~~~~~p~~~v~~i~l~~~~~~~~~g~~~~~~ 255 (538)
+...+ +++. + ...+.++|.++...+.+.|-|.+.|.+++..-.+++.++.+..+..-+.+. ..+.+
T Consensus 110 l~~~~------~~~i-----~--~~~~~l~F~~~~~~iv~~g~~~v~~~n~~L~~~~ii~~~~~~~~l~p~~~~-~~L~~ 175 (403)
T PRK15132 110 ISDWT------GISM-----S--PTAGVLLFTLVAGGVVCVGTSSVDLFNRFLFSAKIIFLVVMLALMMPHIHK-VNLLT 175 (403)
T ss_pred HHHhc------cCCC-----C--hHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH-HHHhc
Confidence 43311 1111 1 245566666666668888999999999998766555555444443332211 11111
Q ss_pred ccccCCchhhHHHHHHHHHHHHHHHHhHhccccccccccccCC
Q 009276 256 KSSKLSSSEFWSLFFPSLTANISFWATVALNIPDFTRYAKSQN 298 (538)
Q Consensus 256 ~~~~~~~~~~~~~~~~ai~~~ig~~~~~~~~~sDysRy~k~~~ 298 (538)
.+. . .+.. ..++-..+ .-.+.....|..+||.+++.
T Consensus 176 ~~~--~-~~~~---~~~iPvl~-~SFgfh~iIpsl~~y~~~~~ 211 (403)
T PRK15132 176 LPL--Q-QGLA---LSAIPVIF-TSFGFHGSVPSIVSYMGGNI 211 (403)
T ss_pred CCc--c-ccHH---HHHHHHHH-HHhhCCcccHHHHHHhCcCH
Confidence 110 1 1111 12222222 22345667899999987553
No 60
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=96.13 E-value=3.1 Score=46.53 Aligned_cols=98 Identities=11% Similarity=0.057 Sum_probs=59.3
Q ss_pred ccccCC-Ccceehhhhhccccch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccCCCCCCCChhHHHHH
Q 009276 126 GTKYGI-PFPVLARSSFGIKGAH-IPTLLRALVGCGWYGIETWIGGEAVFLLLPKFIKQSSILSQSLPWLGTSPLEFACF 203 (538)
Q Consensus 126 G~k~Gl-~~~v~sR~~FG~~Gs~-lp~li~~i~~igW~~v~~~~gg~al~~~l~~~~~~~~~~~~~~p~~g~t~~~~i~~ 203 (538)
-.|+|. +.+..-+.-||.+..+ +-.++..+..+.|.+.|..-++..++.+++ ++ .+.+.
T Consensus 89 ~rr~~~~T~~e~l~~Rf~s~~~~~~~~i~~~~~~~~~l~~ql~~~~~~l~~~~g-----------------i~--~~~~i 149 (552)
T TIGR03648 89 LRKFGKYTVPDFIGDRYYSNTARLVAVICAIFISFTYVAGQMRGVGVVFSRFLE-----------------VD--FETGV 149 (552)
T ss_pred HHHCCCccHHHHHHHHhCCCceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----------------CC--HHHHH
Confidence 345553 3344455667766544 444556677889999999888877776643 11 23333
Q ss_pred HHHHHHH-HHHHhhchhhHHHHHhhhhhHHHHHHHHHHHH
Q 009276 204 IAFWLAQ-LAIVWKGIEGIRELEKYSAPILIILTSSFLFW 242 (538)
Q Consensus 204 ii~~~l~-~~~~~~G~~~i~~~~~~~~p~~~v~~i~l~~~ 242 (538)
++..++. +-..+-|++..-+...+...++.+..+.++.+
T Consensus 150 ii~~~i~~iYt~~GG~~aV~~TD~iQ~iim~ig~i~~~~~ 189 (552)
T TIGR03648 150 FIGMAIVFFYAVLGGMKGVTWTQVAQYIVLIVAYLVPAIF 189 (552)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333433 44556789999888888876665554443333
No 61
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=96.10 E-value=3.2 Score=46.43 Aligned_cols=99 Identities=12% Similarity=0.116 Sum_probs=60.4
Q ss_pred CCcceehhhhhccccchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccCCCCCCCChhHHHHHHHHHHH
Q 009276 131 IPFPVLARSSFGIKGAHI-PTLLRALVGCGWYGIETWIGGEAVFLLLPKFIKQSSILSQSLPWLGTSPLEFACFIAFWLA 209 (538)
Q Consensus 131 l~~~v~sR~~FG~~Gs~l-p~li~~i~~igW~~v~~~~gg~al~~~l~~~~~~~~~~~~~~p~~g~t~~~~i~~ii~~~l 209 (538)
.+.+...+.-||.+..+. -++...+..+.|.+.|..-+|..++.+++ ++ .+.+.++.+++
T Consensus 130 ~T~~d~l~~Rf~s~~~r~l~ai~~i~~~~~yl~~ql~g~g~il~~~~g-----------------i~--~~~~iii~~~i 190 (549)
T TIGR02711 130 YTFADVASYRLKQRPIRILSACGSLVVVALYLIAQMVGAGKLIELLFG-----------------LN--YHVAVVLVGIL 190 (549)
T ss_pred ccHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----------------CC--HHHHHHHHHHH
Confidence 344444455666665553 34455666788889998777777766542 11 23444444444
Q ss_pred H-HHHHhhchhhHHHHHhhhhhHHHHHHHHHHHHHHHhcC
Q 009276 210 Q-LAIVWKGIEGIRELEKYSAPILIILTSSFLFWAYVNAG 248 (538)
Q Consensus 210 ~-~~~~~~G~~~i~~~~~~~~p~~~v~~i~l~~~~~~~~~ 248 (538)
. +-..+-|++...+.+-+...++.+..+.+.++.+.+.|
T Consensus 191 ~~~Yt~~GGm~av~~td~iQ~~im~~g~i~~~~~~~~~~g 230 (549)
T TIGR02711 191 MVMYVLFGGMLATTWVQIIKAVLLLFGATFMAFMVMKSVG 230 (549)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4 34556789999998888887776655555444555544
No 62
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=95.98 E-value=3.3 Score=45.57 Aligned_cols=40 Identities=20% Similarity=0.113 Sum_probs=24.8
Q ss_pred hcccccccC---CCcceehhhhhccccchHHHHHHHHHHHHHH
Q 009276 122 TGHPGTKYG---IPFPVLARSSFGIKGAHIPTLLRALVGCGWY 161 (538)
Q Consensus 122 ~g~~G~k~G---l~~~v~sR~~FG~~Gs~lp~li~~i~~igW~ 161 (538)
.+..+.++- =+...-.|..||.+-+.+....-+...+.|.
T Consensus 58 ~aEL~s~~P~~aGG~Y~w~~~~~G~~~gf~~~w~~~~~~~~~~ 100 (496)
T PRK15238 58 MAEYGSAFKDEKGGIYSWMNKSVGPKFAFIGTFMWFASYIIWM 100 (496)
T ss_pred HHHHHhcCCCCCCcHHHHHHHHcCchHHHHHHHHHHHHHHHHH
Confidence 455555543 1667888999998777665554444445554
No 63
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=95.78 E-value=3.2 Score=45.01 Aligned_cols=136 Identities=14% Similarity=0.029 Sum_probs=84.1
Q ss_pred cCcHHHHHHHHHHHHHHHHHHHHh---hcccccccCCCcceehhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009276 98 GMAWWQGIATVVAANVILLVPLVL---TGHPGTKYGIPFPVLARSSFGIKGAHIPTLLRALVGCGWYGIETWIGGEAVFL 174 (538)
Q Consensus 98 GLs~~qal~aiiiG~~i~~~~~~l---~g~~G~k~Gl~~~v~sR~~FG~~Gs~lp~li~~i~~igW~~v~~~~gg~al~~ 174 (538)
+.++|..++..++.-.+...---. .-.-+.+.|.++..+.|..||.+|..+-.++..+....+..+=. ..+..
T Consensus 46 ~~Gf~p~lillll~~p~m~~s~l~L~e~~L~~~~~~~~i~~v~~~~lG~~g~~i~~ilYff~ly~ll~aY~----~~itn 121 (443)
T PRK13629 46 FGGLIPILLMLVLAYPIAFYCHRALARLCLSGSNPSGNITETVEEHFGKTGGVVITFLYFFAICPLLWIYG----VTITN 121 (443)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHH----HHHHH
Confidence 567787777766665544332111 11223367899999999999999998887777666554443321 33333
Q ss_pred HhhhhhhcccccccCCCCCCC-ChhHHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHHHHHHHHHHHHHHHh
Q 009276 175 LLPKFIKQSSILSQSLPWLGT-SPLEFACFIAFWLAQLAIVWKGIEGIRELEKYSAPILIILTSSFLFWAYVN 246 (538)
Q Consensus 175 ~l~~~~~~~~~~~~~~p~~g~-t~~~~i~~ii~~~l~~~~~~~G~~~i~~~~~~~~p~~~v~~i~l~~~~~~~ 246 (538)
.+...+... + ++ +...++.-+++.++...+.+.|-|.+.|+.++....+++.++.+..+.+-+
T Consensus 122 ~l~sfl~~q------l---~~~~~~r~l~slifv~~l~~iv~~G~~~v~kv~~~Lv~~~i~~l~~l~~~LiP~ 185 (443)
T PRK13629 122 TFMTFWENQ------L---GFAPLNRGFVALFLLLLMAFVIWFGKDLMVKVMSYLVWPFIASLVLISLSLIPY 185 (443)
T ss_pred HHHHHHHhh------c---CcCCccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333221111 1 11 112455556666777788889999999999998877766666666665543
No 64
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=95.51 E-value=4.3 Score=43.38 Aligned_cols=293 Identities=19% Similarity=0.252 Sum_probs=135.9
Q ss_pred HHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHHHHHHHHHHHHHHHhcCCCcccccccccCCchhhHHHHHHH---HHH
Q 009276 199 EFACFIAFWLAQLAIVWKGIEGIRELEKYSAPILIILTSSFLFWAYVNAGGFGHMLSKSSKLSSSEFWSLFFPS---LTA 275 (538)
Q Consensus 199 ~~i~~ii~~~l~~~~~~~G~~~i~~~~~~~~p~~~v~~i~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~a---i~~ 275 (538)
..+--+++-++...+++...|.++++.|+..|+++++.+.+.+-.+...+| +.-+..++.....+...|..+ +.+
T Consensus 120 l~ifs~ifF~ia~~~sl~psklid~vGk~LTPilLv~l~il~i~~~~~p~g--~~~~a~~~y~~~pf~~GfleGY~TMDa 197 (431)
T COG1114 120 LFIFSVIFFAIAYLFSLNPSKLIDRVGKFLTPILLVLLLILVIAAIIPPAG--PISAASGAYQSQPFSKGFLEGYLTMDA 197 (431)
T ss_pred HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCC--CcccccHHHHhChHHHHHhcchHHHHH
Confidence 344445666677788889999999999999999988777666555444333 111111111100111111111 111
Q ss_pred HHHH-HHhHhccccccccccccCCcchh-----hc---hhhhHHHHHHHHHHHHHhhhhhhhhhccccCHHHHHHHh---
Q 009276 276 NISF-WATVALNIPDFTRYAKSQNDQIL-----GQ---AGLPIFMGAFTFVGLAITCSTQVIFGRVISSPIQLLDQI--- 343 (538)
Q Consensus 276 ~ig~-~~~~~~~~sDysRy~k~~~~~~~-----g~---~g~p~~~~~~~~~G~~~~~a~~~~~G~~~~dp~~~l~~~--- 343 (538)
..+. +.....|+=-..+..+ +|+... |- +++........-+|+ .+....++ ..|-.+++.+.
T Consensus 198 LAal~FgivIv~alk~~g~~~-~~~~~~~~~~aglIa~i~La~iY~~L~ylGa----~s~~~~~~-~~nG~~IL~~~s~~ 271 (431)
T COG1114 198 LAALAFGIVIVNALKSKGVTT-KKQIIKYTIKAGLIAAILLALIYLSLFYLGA----TSASAAGL-AANGGQILSAYSQH 271 (431)
T ss_pred HHHHHHHHHHHHHHHHhccCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----chHhhccc-ccchHHHHHHHHHH
Confidence 1111 1111222222222222 221111 11 111111111222331 11122222 34556666543
Q ss_pred -hhhHHHHHHHHHHHHHHHHHhhhhhhhhhHHhHhhhcCcccccchhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHhh
Q 009276 344 -GGITTRILGIIGISLATITTNIAANVVAPANALVNLRPSIFTFRKGAILTALLGIAFQPWRLLKSSESFVYTWLVGYSA 422 (538)
Q Consensus 344 -g~~~~~~~~~l~i~la~i~~Ni~~N~ys~~~~l~~l~pk~~~~~r~~ii~avl~~~l~pw~l~~~~~~fl~~fL~~lg~ 422 (538)
-+..+.++..+.+.++.++|.+ .=..+.+-=+..+.|| ++.|..+.+..+++..++-.++ +..+ ....-.-.
T Consensus 272 ~fG~~G~~lL~~iv~lACLTTai-GLi~a~aefF~~~~p~-~SY~~~v~if~i~sflvan~GL----~~Ii-~isvPvL~ 344 (431)
T COG1114 272 LFGSYGSILLGLIVFLACLTTAV-GLIVACAEFFSKLVPK-LSYKTWVIIFTLISFLVANLGL----EQII-KISVPVLT 344 (431)
T ss_pred HhchhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhccc-ccHHHHHHHHHHHHHHHHHhhH----HHHH-HHHHHHHH
Confidence 1223455666778899999974 3334444556677886 6889888888888877665433 2222 11111122
Q ss_pred hHhHHHHHHhhhhhhhhcCCCCcccccccCCCCcccccCCCchHHHHHHHHHHhhccc--ccccc-ccccccccccchhc
Q 009276 423 LLGPIGGIILADYYLIQGAKLSIKYLYSLNPNGAYYYSGGYNLVAIMALSIGILPVIP--GFLQK-VGLVVTIPNSFVVI 499 (538)
Q Consensus 423 ~l~P~~gI~l~Dy~liRr~~~~~~~Ly~~~~~g~Y~y~~G~N~~ai~A~~~G~~~~~p--g~~~~-~g~~~~~~~~~~~~ 499 (538)
++=|++-+.++=-++ ||- .+. + ++ ..+..-+.+.+.+..-++. ++... .+....+| ...
T Consensus 345 ~iYPiaI~Lv~l~~~-~k~-~~~-------~--~~----~y~~~l~~t~i~~i~d~l~~~~~~~~~~~~~~~LP---l~~ 406 (431)
T COG1114 345 AIYPIAIALVLLSFA-RKL-WKN-------S--KR----VYRLTLLVTLIISILDGLKASGFKMILPNFFQHLP---LAE 406 (431)
T ss_pred HHhHHHHHHHHHHHH-HHH-hcC-------c--ch----hHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhCC---HHh
Confidence 344555555444433 321 110 0 10 1222333444444333211 11100 00111122 234
Q ss_pred cchhHHHHHHHHHHHHHHHhhccCC
Q 009276 500 YNNAWFFSFFLAGFVYWVLSLLRGK 524 (538)
Q Consensus 500 ~~~s~~~g~~vs~vvY~~l~~~~~~ 524 (538)
++++|++=.+++.++-+++.|..+|
T Consensus 407 ~gl~Wlvp~lv~~i~~~~i~~~~~~ 431 (431)
T COG1114 407 YGLGWLVPALVGLILGYIIDRAKKK 431 (431)
T ss_pred cCCccHHHHHHHHHHHHHHHHHhcC
Confidence 6789988888888887777665543
No 65
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=95.45 E-value=5.4 Score=44.15 Aligned_cols=85 Identities=11% Similarity=0.083 Sum_probs=44.3
Q ss_pred CcceehhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccCCCCCCCC-hhHHHH-HHHHHHH
Q 009276 132 PFPVLARSSFGIKGAHIPTLLRALVGCGWYGIETWIGGEAVFLLLPKFIKQSSILSQSLPWLGTS-PLEFAC-FIAFWLA 209 (538)
Q Consensus 132 ~~~v~sR~~FG~~Gs~lp~li~~i~~igW~~v~~~~gg~al~~~l~~~~~~~~~~~~~~p~~g~t-~~~~i~-~ii~~~l 209 (538)
+...-.|..||.+-..+.....++....|+.........++..++. ++.. ..+ ...++. .+++|++
T Consensus 67 G~y~wv~~a~G~~~Gf~~~~~~W~~~~~~~~~~~~~~~~~~~y~~~--~~~~----------~~~~~~~~i~~l~i~~~~ 134 (507)
T TIGR00910 67 GIFAWVSNTLGERFGFAAIFFGWFQIAIGFIPMIYFILGALSYILK--FPAL----------NEDPIIKFIAALIIFWAL 134 (507)
T ss_pred CeeeehhhccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--Cchh----------ccCcHHHHHHHHHHHHHH
Confidence 6788899999997777666666666555544332211111121111 1111 001 012222 2334443
Q ss_pred HHHHHhhchhhHHHHHhhhh
Q 009276 210 QLAIVWKGIEGIRELEKYSA 229 (538)
Q Consensus 210 ~~~~~~~G~~~i~~~~~~~~ 229 (538)
+.+.+.|.|...+++++..
T Consensus 135 -t~~n~~G~k~~~~i~~i~~ 153 (507)
T TIGR00910 135 -AFSQFGGTKRTAKIAKAGF 153 (507)
T ss_pred -HHHHHhhhHHHHHHHHHHH
Confidence 4456788998888888754
No 66
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=95.29 E-value=6 Score=43.71 Aligned_cols=140 Identities=14% Similarity=0.159 Sum_probs=87.1
Q ss_pred hccCcHHHHHHHHHHHHHHHHHHHH-hhccccccc-CCCcceehhhhhc-cccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009276 96 DLGMAWWQGIATVVAANVILLVPLV-LTGHPGTKY-GIPFPVLARSSFG-IKGAHIPTLLRALVGCGWYGIETWIGGEAV 172 (538)
Q Consensus 96 ~~GLs~~qal~aiiiG~~i~~~~~~-l~g~~G~k~-Gl~~~v~sR~~FG-~~Gs~lp~li~~i~~igW~~v~~~~gg~al 172 (538)
..|++.....+...+|..+...+.. -.-+...+. -++.+..-+.-|| .....+-+++..+..+.+.+.|..-++..+
T Consensus 68 ~~G~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~T~~d~l~~Rf~s~~lr~l~ali~iv~~i~yia~ql~~~~~~~ 147 (493)
T COG0591 68 ASGLSGLWIAIGLLIGAFLLWLLFAPRLRRLAKARGATTIPDFLEARFGSKILRILSALIIIVFFIPYIALQLVAGGLLL 147 (493)
T ss_pred hcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4466665555554445444433322 222333222 3556677788888 555567778888899999999998888777
Q ss_pred HHHhhhhhhcccccccCCCCCCCChhHHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHHHHHHHHHHHHHHHhcCCCcc
Q 009276 173 FLLLPKFIKQSSILSQSLPWLGTSPLEFACFIAFWLAQLAIVWKGIEGIRELEKYSAPILIILTSSFLFWAYVNAGGFGH 252 (538)
Q Consensus 173 ~~~l~~~~~~~~~~~~~~p~~g~t~~~~i~~ii~~~l~~~~~~~G~~~i~~~~~~~~p~~~v~~i~l~~~~~~~~~g~~~ 252 (538)
+..++ ++. .....++..++..-..+.|++...+-+.+...++.+.+..+.++...+.+|.+.
T Consensus 148 ~~~~g-----------------i~~-~~~~~~~~~~v~~Yt~~gG~~av~~Td~iqg~im~i~~~~~~i~~~~~~~g~~~ 209 (493)
T COG0591 148 SLLFG-----------------ISY-VTGILIGALIVALYTFLGGLRAVVWTDFIQGLIMLIALIVIPILVLILFGGFGE 209 (493)
T ss_pred hhhcC-----------------CCH-HHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHH
Confidence 55432 111 112222333444556788999999999999888887777766666665666554
Q ss_pred c
Q 009276 253 M 253 (538)
Q Consensus 253 ~ 253 (538)
.
T Consensus 210 ~ 210 (493)
T COG0591 210 L 210 (493)
T ss_pred H
Confidence 3
No 67
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=95.28 E-value=6.5 Score=44.08 Aligned_cols=131 Identities=13% Similarity=-0.035 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccccCC--CcceehhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 009276 104 GIATVVAANVILLVPLVLTGHPGTKYGI--PFPVLARSSFGIKGAHIPTLLRALVGCGWYGIETWIGGEAVFLLLPKFIK 181 (538)
Q Consensus 104 al~aiiiG~~i~~~~~~l~g~~G~k~Gl--~~~v~sR~~FG~~Gs~lp~li~~i~~igW~~v~~~~gg~al~~~l~~~~~ 181 (538)
.+++.+++.+...+.....+..+.++-. +....++..||..-+.+......+..+...+......+..+..++...++
T Consensus 64 ~~ls~liagv~~l~~al~yaElas~~P~sGg~Y~y~~~~~G~~~gfi~GW~~~l~~~~~~a~va~~~s~yl~~ll~~~~~ 143 (557)
T TIGR00906 64 IVLSFLISGLAAVLSGFCYAEFGARVPKAGSAYLYSYVTVGELWAFITGWNLILEYVIGTAAVARSWSAYFDELLNKQIG 143 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcceeeHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 4555566665544444444555544433 34556677788765555444333332222222222222223333221111
Q ss_pred cccccccCCCCCCCC-hhHHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHHHHH
Q 009276 182 QSSILSQSLPWLGTS-PLEFACFIAFWLAQLAIVWKGIEGIRELEKYSAPILIIL 235 (538)
Q Consensus 182 ~~~~~~~~~p~~g~t-~~~~i~~ii~~~l~~~~~~~G~~~i~~~~~~~~p~~~v~ 235 (538)
.+..........+.+ ....+++.+.. +.+.+..+|.|...|++++...+.++.
T Consensus 144 ~~~~~~~~~~~~~l~~~~~~~a~~ii~-l~~~ln~~Gik~s~~v~~i~~~iki~~ 197 (557)
T TIGR00906 144 QFRRTYFKLNYDGLAEYPDFFAVCLIL-LLAVLLSFGVKESAWVNKIFTAINILV 197 (557)
T ss_pred ccccccccccCCcccccchHHHHHHHH-HHHHHHHhchhHHHHHHHHHHHHHHHH
Confidence 110000000000111 11234444433 345677899999999999877654443
No 68
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=94.98 E-value=7.2 Score=42.92 Aligned_cols=29 Identities=3% Similarity=-0.036 Sum_probs=20.9
Q ss_pred HHHHHHHHhhchhhHHHHHhhhhhHHHHH
Q 009276 207 WLAQLAIVWKGIEGIRELEKYSAPILIIL 235 (538)
Q Consensus 207 ~~l~~~~~~~G~~~i~~~~~~~~p~~~v~ 235 (538)
.++.+.+-.+|.|...|++.+...+.++.
T Consensus 173 i~~~~~ln~~Gvk~~~~~~~i~~~~~l~~ 201 (501)
T TIGR00911 173 VLLLTLVNCLSVKWATRVQDIFTACKLLA 201 (501)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 33455667889999999999887654443
No 69
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=93.67 E-value=13 Score=40.63 Aligned_cols=124 Identities=7% Similarity=-0.067 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccccCC--CcceehhhhhccccchHHHHH-HHHHHHHHHHHHH---HHHHHHHHHHhh
Q 009276 104 GIATVVAANVILLVPLVLTGHPGTKYGI--PFPVLARSSFGIKGAHIPTLL-RALVGCGWYGIET---WIGGEAVFLLLP 177 (538)
Q Consensus 104 al~aiiiG~~i~~~~~~l~g~~G~k~Gl--~~~v~sR~~FG~~Gs~lp~li-~~i~~igW~~v~~---~~gg~al~~~l~ 177 (538)
.+++-+++.++....+...+.++.++-. +.....|..+|.+-....+.+ .+...++|..... +..++.+..+..
T Consensus 49 ~i~~~~i~gi~~l~~~~~~aEl~s~~P~~Gg~y~~~~~~~g~~~g~~~~f~~gW~~~~~~~~~~a~~~~~~~~~~~~~~~ 128 (482)
T TIGR00907 49 IVWGWIIAGAGSICIALSLAELSSAYPTSGGQYFWSAKLAPPRQMPFASWMTGWFNLAGQVAGTASTDLSVAQLILGIVS 128 (482)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHhcccccccceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666555555555666655533 345556777775433333333 3444455554432 222222222211
Q ss_pred hhhhcccccccCCCCCCCChhHHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHHHH
Q 009276 178 KFIKQSSILSQSLPWLGTSPLEFACFIAFWLAQLAIVWKGIEGIRELEKYSAPILII 234 (538)
Q Consensus 178 ~~~~~~~~~~~~~p~~g~t~~~~i~~ii~~~l~~~~~~~G~~~i~~~~~~~~p~~~v 234 (538)
...+. +...|. . ....+..+++..+.+.+-.+|.|...+++++...+.++
T Consensus 129 ~~~~~----~~~~~~-~--~~~~~i~~~~~~~~~~in~~g~k~~~~~~~~~~~~~i~ 178 (482)
T TIGR00907 129 LTTPG----REYIPT-R--WHIFGIMIGIHLIHALINSLPTKWLPRITSSAAYWSLL 178 (482)
T ss_pred hcCCC----CCcccc-C--chhhhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHH
Confidence 10010 000010 0 00112223333445566778999999988886544333
No 70
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=93.53 E-value=13 Score=40.27 Aligned_cols=111 Identities=16% Similarity=0.080 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccc---ccccCCCcceehhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 009276 102 WQGIATVVAANVILLVPLVLTGHP---GTKYGIPFPVLARSSFGIKGAHIPTLLRALVGCGWYGIETWIGGEAVFLLLPK 178 (538)
Q Consensus 102 ~qal~aiiiG~~i~~~~~~l~g~~---G~k~Gl~~~v~sR~~FG~~Gs~lp~li~~i~~igW~~v~~~~gg~al~~~l~~ 178 (538)
...+++-+++.++...+|-..|.+ .+.+| ++...+|-.+|.+-.++-.-..++.-+.=-..|.. |+...++.
T Consensus 46 PSvlLaY~I~G~~~f~iMRaLGEm~~~~p~~g-SF~~~a~~~lG~~Agf~tgW~YW~~wv~v~~ae~t----Ai~~y~~~ 120 (462)
T COG1113 46 PSVLLAYLIAGIFVFLIMRALGEMLVANPVSG-SFSDYARKYLGPWAGFLTGWTYWFFWVLVGIAELT----AIGIYLQF 120 (462)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH
Confidence 345667777777766666555554 33455 67777777777776665554444332222222221 12222222
Q ss_pred hhhcccccccCCCCCCCChhHHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhH
Q 009276 179 FIKQSSILSQSLPWLGTSPLEFACFIAFWLAQLAIVWKGIEGIRELEKYSAPI 231 (538)
Q Consensus 179 ~~~~~~~~~~~~p~~g~t~~~~i~~ii~~~l~~~~~~~G~~~i~~~~~~~~p~ 231 (538)
.+|. . ++|+.-+++.++...+-..+.|.-..+|.|.+-+
T Consensus 121 WfP~------------v--P~Wv~al~~~~l~~~~NL~sVk~FGE~EfWfAlI 159 (462)
T COG1113 121 WFPD------------V--PQWVFALAAVVLLLAVNLISVKVFGELEFWFALI 159 (462)
T ss_pred hcCC------------C--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2221 1 3677666666666666667777777777776644
No 71
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=93.22 E-value=16 Score=40.41 Aligned_cols=116 Identities=15% Similarity=0.120 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccccCCCcceehhhhhccccchH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 009276 101 WWQGIATVVAANVILLVPLVLTGHPGTKYGIPFPVLARSSFGIKGAHI--PTLLRALVGCGWYGIETWIGGEAVFLLLPK 178 (538)
Q Consensus 101 ~~qal~aiiiG~~i~~~~~~l~g~~G~k~Gl~~~v~sR~~FG~~Gs~l--p~li~~i~~igW~~v~~~~gg~al~~~l~~ 178 (538)
+..++++-++...+..+.|.-.|-+...+-+ ..+|-.+++++ |++=.++.-..|+.--+.++.+....-+.
T Consensus 77 P~g~li~y~i~G~~vy~vm~sLGEma~~~P~------sGsF~~ya~rfvdpa~GFa~gWnYw~~w~v~~~~El~aa~~v- 149 (541)
T COG0833 77 PAGLLIAYLIIGIMVYFVMQSLGELAVFYPV------SGSFSTYATRFVDPAFGFALGWNYWLNWAVTLPLELTAASLV- 149 (541)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC------CCchhhhhhhhcCchHHHHHHHHHHHHHHHHhhHHHHHHHHh-
Confidence 4456777777666667777777776665532 23466666664 44433333344444444444443332111
Q ss_pred hhhcccccccCCCCCCCChhHHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHHH
Q 009276 179 FIKQSSILSQSLPWLGTSPLEFACFIAFWLAQLAIVWKGIEGIRELEKYSAPILI 233 (538)
Q Consensus 179 ~~~~~~~~~~~~p~~g~t~~~~i~~ii~~~l~~~~~~~G~~~i~~~~~~~~p~~~ 233 (538)
...|. +++ ...+++..+|+++.+.+-.+|.|..--.|-|..-+-+
T Consensus 150 -i~yW~--p~~-------v~~~~w~~iF~~~i~~iN~~~Vk~fGE~Efw~s~iKV 194 (541)
T COG0833 150 -IQYWF--PDT-------VPPWIWIAIFLVLIFLLNLFGVKGFGETEFWFSSIKV 194 (541)
T ss_pred -hhhhc--CCC-------CChHHHHHHHHHHHHHHHHhcccccceehHHHHHHHH
Confidence 11111 111 1257788888898888888998888777777665433
No 72
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=93.22 E-value=0.61 Score=50.97 Aligned_cols=124 Identities=16% Similarity=0.045 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhc---ccccccCCCcceehhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 009276 103 QGIATVVAANVILLVPLVLTG---HPGTKYGIPFPVLARSSFGIKGAHIPTLLRALVGCGWYGIETWIGGEAVFLLLPKF 179 (538)
Q Consensus 103 qal~aiiiG~~i~~~~~~l~g---~~G~k~Gl~~~v~sR~~FG~~Gs~lp~li~~i~~igW~~v~~~~gg~al~~~l~~~ 179 (538)
.++++.+++.++....+.-.+ ...++.|= +....|..+|.+-........++..+.-.+.+....+..+ ..
T Consensus 30 ~~~la~li~~i~~~~~~~~~~ems~~~p~~Gg-~y~y~~~~lg~~~Gf~~gw~y~~~~~~~~~~~~~~~~~~~----~~- 103 (478)
T PF00324_consen 30 GAPLAYLIAGIIVLLVALSLAEMSRRFPSAGG-FYAYASRGLGPALGFAAGWAYWLSYIAAIAAEATAAGSFL----QF- 103 (478)
T ss_pred cchhHhHHHHHHHHhhhhhhhhhhhhhccccc-hhhhhhhccCCcCCceeeHHHHHHHHHHHHhhhhhhhhhh----cc-
Confidence 345666666665555444333 33443343 3445555777765555444444333333333332222211 11
Q ss_pred hhcccccccCCCCCCCChhHH--HHHHHHHHHHHHHHhhchhhHHHHHhhhhhHHHHHHHHHH
Q 009276 180 IKQSSILSQSLPWLGTSPLEF--ACFIAFWLAQLAIVWKGIEGIRELEKYSAPILIILTSSFL 240 (538)
Q Consensus 180 ~~~~~~~~~~~p~~g~t~~~~--i~~ii~~~l~~~~~~~G~~~i~~~~~~~~p~~~v~~i~l~ 240 (538)
+....+ .|. ...+ +...++.++.+.+.++|.|.-.+.|.+...+.++..+.++
T Consensus 104 ~~~~~~----~~~----~~~~~~~~~~i~~~~~~~l~~~gv~~~~~~~~~~~~i~~~~li~~i 158 (478)
T PF00324_consen 104 WGYFPG----LPS----TWVWGILIAIIFILLITLLNLFGVRVSGKIEFILTIIKLIALIAFI 158 (478)
T ss_pred cccccc----ccc----cccccchhhhhhhhhhhhhhhhhhhccchHHHHHHHHhhhHhhhhh
Confidence 100110 010 0011 2244555666778889999999988887766554444433
No 73
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=92.03 E-value=0.029 Score=59.62 Aligned_cols=49 Identities=22% Similarity=0.166 Sum_probs=33.1
Q ss_pred ccCCCcceehhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009276 128 KYGIPFPVLARSSFGIKGAHIPTLLRALVGCGWYGIETWIGGEAVFLLL 176 (538)
Q Consensus 128 k~Gl~~~v~sR~~FG~~Gs~lp~li~~i~~igW~~v~~~~gg~al~~~l 176 (538)
+...++..+.|..||.+|.++..+...+...|=...-....++.+..++
T Consensus 65 ~~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~ 113 (409)
T PF01490_consen 65 TGRRSYGDLARRAFGPKGKWFVDICIFIYLFGSCVAYLIIIGDSLSSLI 113 (409)
T ss_pred cccccccccccccccccccccccchheeccccccceeEEEeeeeeeccc
Confidence 3578889999999999998887777766655433333334455554444
No 74
>KOG2349 consensus Na+:iodide/myo-inositol/multivitamin symporters [Inorganic ion transport and metabolism]
Probab=90.19 E-value=2.6 Score=47.07 Aligned_cols=278 Identities=15% Similarity=0.209 Sum_probs=149.5
Q ss_pred ceehhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccCCCCCCCChhHHHHHHHHHHHHH-H
Q 009276 134 PVLARSSFGIKGAHIPTLLRALVGCGWYGIETWIGGEAVFLLLPKFIKQSSILSQSLPWLGTSPLEFACFIAFWLAQL-A 212 (538)
Q Consensus 134 ~v~sR~~FG~~Gs~lp~li~~i~~igW~~v~~~~gg~al~~~l~~~~~~~~~~~~~~p~~g~t~~~~i~~ii~~~l~~-~ 212 (538)
+.--|..||.+..++.++...++.+-+..+..+..+.++++..+.-. .+.+++.+++.+ -
T Consensus 111 ~eYl~~Rf~~~~r~l~~l~f~l~~~~~l~v~~y~pal~~~qvtg~~~-------------------~l~~~~~~~ic~~Y 171 (585)
T KOG2349|consen 111 YEYLEKRFGGRVRYLATLSFILMIFLYLPVDMYAPALAINQVTGINL-------------------YLIVVILGLICVFY 171 (585)
T ss_pred hHHHHHHhcccchhhHHHHHHHHHHhheeeeEeehHHHHHHHhccCc-------------------eeehHHHHHHHHHH
Confidence 34467889999999999999999999999999999999988764210 112222333332 3
Q ss_pred HHhhchhhHHHHHhhhhhHHHHHHHHHHHHHHHhcCCCcccccccc---------cC-----CchhhHHHHHHHHHHHHH
Q 009276 213 IVWKGIEGIRELEKYSAPILIILTSSFLFWAYVNAGGFGHMLSKSS---------KL-----SSSEFWSLFFPSLTANIS 278 (538)
Q Consensus 213 ~~~~G~~~i~~~~~~~~p~~~v~~i~l~~~~~~~~~g~~~~~~~~~---------~~-----~~~~~~~~~~~ai~~~ig 278 (538)
...-|.+..-+...+.+.+++.....+.+....+.||.+..+.... +. .....|. ++.+.+ +-
T Consensus 172 T~~GGlkaVi~TDv~Q~~iml~~~~~v~i~gt~~vGG~~~V~e~a~~~gr~~~~~~~~~dp~vr~t~W~-~~~Gg~--~~ 248 (585)
T KOG2349|consen 172 TALGGLKAVIWTDVVQTVIMLGGVLAVMIKGTMKVGGLGRVLEKAFDAGRVNFVAEFLRDPTVRHTPWS-LLFGGT--IM 248 (585)
T ss_pred HHhcCeeEEEEhhHHHHHHHHHHHHHHhheeehhcCcccceeeecccCCceeecccccCCCcccccchh-HhcCCc--HH
Confidence 4456787777777777766666666666666667777655432210 11 1112344 332222 11
Q ss_pred HHHhHhccccccccccccC--Ccchhhch--hh--hHHHHHHHHHHHHHhhhh---hhh-hhcc-ccC---HHHHHHHhh
Q 009276 279 FWATVALNIPDFTRYAKSQ--NDQILGQA--GL--PIFMGAFTFVGLAITCST---QVI-FGRV-ISS---PIQLLDQIG 344 (538)
Q Consensus 279 ~~~~~~~~~sDysRy~k~~--~~~~~g~~--g~--p~~~~~~~~~G~~~~~a~---~~~-~G~~-~~d---p~~~l~~~g 344 (538)
+...+++||.=-.||..-+ |++....+ +. .+.+.+....|.+.=+.- ..+ -|.. -.| |.-++..++
T Consensus 249 ~l~~~~vnQ~~VQR~lsl~slk~ak~~~~~~~~~~~l~~~~~~~~G~i~~~~Y~~Cdpl~~g~v~~~D~~~P~fV~d~~~ 328 (585)
T KOG2349|consen 249 WLSYYGVNQLIVQRYLSLPSLKHAKPSLLLFGYGVLLIMFIMVFVGMIIYALYTDCDPLCGGLVGCPDQLLPLFVMDLMG 328 (585)
T ss_pred HHHHHhhhHHHHhHHhccccHHHhhhhhhhhhhHHHHHHHhhcccceeEeeecccCCcccccccCCccccccHHHHHhcC
Confidence 2335578999999998755 33333221 11 111222222333211000 000 0111 134 543344333
Q ss_pred ---hhHHHHH-HHHHHHHHHHHHhhhhhhhhhH--HhHhhhcCcccccchhH-------HHHHHHHHHHHHHHhhhcchh
Q 009276 345 ---GITTRIL-GIIGISLATITTNIAANVVAPA--NALVNLRPSIFTFRKGA-------ILTALLGIAFQPWRLLKSSES 411 (538)
Q Consensus 345 ---~~~~~~~-~~l~i~la~i~~Ni~~N~ys~~--~~l~~l~pk~~~~~r~~-------ii~avl~~~l~pw~l~~~~~~ 411 (538)
+..+.+. +.+...+++++++ .|..|+- .|+..-.+|.++-|+.. ++++++++...+ ..++...
T Consensus 329 ~~pGl~GLfia~vfsA~LSsLSS~--~NS~s~v~~eD~ik~~~k~~se~~~~~~~r~~vvv~G~~si~~~f--vv~~~~~ 404 (585)
T KOG2349|consen 329 HLPGLRGLFIAVVFSAALSSLSSI--FNSLSTVFLEDYIKPLRKPLSERELNIAMRLFVVVLGLISIGLAF--VVELLQQ 404 (585)
T ss_pred CCCCccchhHHHHHHHHHHHHHHh--hhhHHHHHHHHHHHhhcCCcChHHHhhhhheeeeeehhHHHHHHH--HHHHHHH
Confidence 3333333 2344567777776 4766654 34444344423333332 223344444333 2233334
Q ss_pred HHHHHHHHHhhhHhHHHHHHhhhhhh
Q 009276 412 FVYTWLVGYSALLGPIGGIILADYYL 437 (538)
Q Consensus 412 fl~~fL~~lg~~l~P~~gI~l~Dy~l 437 (538)
.++.-.+..|+.-+|+.|+.+-.-|+
T Consensus 405 vlq~~~si~g~~~gP~~gvF~Lgmf~ 430 (585)
T KOG2349|consen 405 VLQYSQSIFGYLGGPLLGVFVLGMFV 430 (585)
T ss_pred HHHHHHHHHhcccccHHHHHHHHHhc
Confidence 44455778899999999999999865
No 75
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=88.62 E-value=38 Score=36.30 Aligned_cols=112 Identities=13% Similarity=0.081 Sum_probs=69.6
Q ss_pred hcccccccCCCcceehhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccCCCCCCCC-hhHH
Q 009276 122 TGHPGTKYGIPFPVLARSSFGIKGAHIPTLLRALVGCGWYGIETWIGGEAVFLLLPKFIKQSSILSQSLPWLGTS-PLEF 200 (538)
Q Consensus 122 ~g~~G~k~Gl~~~v~sR~~FG~~Gs~lp~li~~i~~igW~~v~~~~gg~al~~~l~~~~~~~~~~~~~~p~~g~t-~~~~ 200 (538)
.+..-++.| +.....|..||.+-..+......+....+....+...+..+...+. ... .. ..+ ...+
T Consensus 68 l~~~~p~~G-G~y~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~----~~---~~~~~~~~ 135 (466)
T COG0531 68 LSSAIPSAG-GAYAYAKRALGPRLGFLAGWLYLLAYVIALAAIAIGAASYLSYLFP----GPG----LL---SIGPLLII 135 (466)
T ss_pred HHhcCCCCC-CeeeehhhhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----cch----hh---cCCchHHH
Confidence 344556677 7888999999977667777777777777777777666664444332 110 00 000 1233
Q ss_pred HHHHHHHHHHHHHHhhchhhHHHHHhhhhhHHHHHHHHHHHHHHH
Q 009276 201 ACFIAFWLAQLAIVWKGIEGIRELEKYSAPILIILTSSFLFWAYV 245 (538)
Q Consensus 201 i~~ii~~~l~~~~~~~G~~~i~~~~~~~~p~~~v~~i~l~~~~~~ 245 (538)
+..+++..+...+..+|.+...+++++...+-++..+.+.+..+.
T Consensus 136 ~~~~~~~~~~~~ln~~G~~~~~~~~~~~~~~~i~~~i~~~i~~~~ 180 (466)
T COG0531 136 LIALALIALLTLLNLRGIKASAKINSIITILKIIILLIFIILGLF 180 (466)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555667788999999999988876655554444444333
No 76
>PRK11021 putative transporter; Provisional
Probab=86.33 E-value=50 Score=35.18 Aligned_cols=110 Identities=9% Similarity=-0.051 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccc---ccCCCcceehhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 009276 103 QGIATVVAANVILLVPLVLTGHPGT---KYGIPFPVLARSSFGIKGAHIPTLLRALVGCGWYGIETWIGGEAVFLLLPKF 179 (538)
Q Consensus 103 qal~aiiiG~~i~~~~~~l~g~~G~---k~Gl~~~v~sR~~FG~~Gs~lp~li~~i~~igW~~v~~~~gg~al~~~l~~~ 179 (538)
.++++-+++.++........+..+. +.| +.....|..||.+-+.+......+............+++.+ ...
T Consensus 33 ~~~~~~~i~~~~~~~~al~~aEl~s~~P~aG-G~y~y~~~~~G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~----~~~ 107 (410)
T PRK11021 33 NSLWAWPLLILLIFPIAIVFARLGRHFPHAG-GPAHFVGMAFGPRLGRVTGWLFLSVIPVGLPAALQIAAGFG----QAL 107 (410)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC-CHHHhHHHHhCchhHHHHHHHHHHHHHhhHHHHHHHHHHHH----HHH
Confidence 3455555555554443333444433 334 45667788898876655554443211111110001111111 111
Q ss_pred hhcccccccCCCCCCCChhHHHHHHHHHHHHHHHHhhchhhHHHHHhhhh
Q 009276 180 IKQSSILSQSLPWLGTSPLEFACFIAFWLAQLAIVWKGIEGIRELEKYSA 229 (538)
Q Consensus 180 ~~~~~~~~~~~p~~g~t~~~~i~~ii~~~l~~~~~~~G~~~i~~~~~~~~ 229 (538)
++. .+ ...+...+++.++...+..+|.|...|++.+..
T Consensus 108 ~~~----------~~--~~~~~~~~~~~~~~~~ln~~Gv~~~~~~~~~~~ 145 (410)
T PRK11021 108 FGW----------SS--WQLLLAELLTLALLWLLNLRGASSSANLQTVIA 145 (410)
T ss_pred cCC----------CC--chHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 111 01 112233333334445677889999999998765
No 77
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses. High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B ....
Probab=85.48 E-value=15 Score=40.92 Aligned_cols=33 Identities=27% Similarity=0.258 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhHHhHhhhcCcc
Q 009276 350 ILGIIGISLATITTNIAANVVAPANALVNLRPSI 383 (538)
Q Consensus 350 ~~~~l~i~la~i~~Ni~~N~ys~~~~l~~l~pk~ 383 (538)
++..+.++++.+++.+ ...-+.-..+.+-+|+.
T Consensus 349 ~lFFl~l~~agl~S~i-~~~E~iv~~l~d~~~~~ 381 (523)
T PF00209_consen 349 ILFFLMLFLAGLTSQI-SMLEVIVSALMDEFPIS 381 (523)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHHHHHTST--
T ss_pred HHHHHHHHHHHhhhcC-CceeceeEeeeecCccc
Confidence 3334455566666663 44444455566666653
No 78
>PRK10836 lysine transporter; Provisional
Probab=84.68 E-value=67 Score=35.22 Aligned_cols=28 Identities=14% Similarity=0.159 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHhhchhhHHHHHhhhhh
Q 009276 203 FIAFWLAQLAIVWKGIEGIRELEKYSAP 230 (538)
Q Consensus 203 ~ii~~~l~~~~~~~G~~~i~~~~~~~~p 230 (538)
..++.++...+-.+|.|...+.|.+...
T Consensus 134 ~~~~~~~~~~lN~~gv~~~~~~~~~~~~ 161 (489)
T PRK10836 134 SALFLGVIFLLNYISVRGFGEAEYWFSL 161 (489)
T ss_pred HHHHHHHHHHHHHHcchhhhhhHHHHHH
Confidence 3344444566778899888888876553
No 79
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=80.48 E-value=92 Score=33.81 Aligned_cols=115 Identities=14% Similarity=0.165 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHHHhhcccccc------cCCCcceehhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 009276 105 IATVVAANVILLVPLVLTGHPGTK------YGIPFPVLARSSFGIKGAHIPTLLRALVGCGWYGIETWIGGEAVFLLLPK 178 (538)
Q Consensus 105 l~aiiiG~~i~~~~~~l~g~~G~k------~Gl~~~v~sR~~FG~~Gs~lp~li~~i~~igW~~v~~~~gg~al~~~l~~ 178 (538)
.++.++|......-..+.-+.-.| .|=|...+.|.-+|+ ++..+...+ .+..+++...+=.+.+...+..
T Consensus 85 WI~allGm~~~~~e~~L~~~yr~~~~~g~~~GGP~yyi~~gl~~k---~lg~lfa~~-~i~~f~~~~~~Q~nsi~~~~~~ 160 (425)
T TIGR00835 85 WVTAFIGMATKFVESTLAQKYRERDADGVFRGGPMYYIKKGLGMR---WLAVLFAVF-LIASFGIGNMVQANAIASALSN 160 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHeeeeCCCCCEecChHHHHHHHhCcc---HHHHHHHHH-HHHHHhhhHHHHHHHHHHHHHH
Confidence 566666666555544443333322 133335566655554 454444444 4444333222222333333332
Q ss_pred hhhcccccccCCCCCCCChhHHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHHHHHHHH
Q 009276 179 FIKQSSILSQSLPWLGTSPLEFACFIAFWLAQLAIVWKGIEGIRELEKYSAPILIILTSS 238 (538)
Q Consensus 179 ~~~~~~~~~~~~p~~g~t~~~~i~~ii~~~l~~~~~~~G~~~i~~~~~~~~p~~~v~~i~ 238 (538)
.+ ++ +.|+..+++.++...+..-|.|.+.++.....|++.+..+.
T Consensus 161 ~~-------------~~--~~~v~~i~l~~l~~~vi~GGik~Ia~v~~~lvP~m~~~Y~~ 205 (425)
T TIGR00835 161 AF-------------NV--PKLVTGIVLTVLTALIIFGGLKRIAKISSVVVPFMALLYVI 205 (425)
T ss_pred Hc-------------CC--cHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHH
Confidence 22 11 14555555556666666679999999999999987766543
No 80
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=76.30 E-value=1.2e+02 Score=32.98 Aligned_cols=126 Identities=12% Similarity=0.027 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHHHhhcccccccCC--CcceehhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q 009276 105 IATVVAANVILLVPLVLTGHPGTKYGI--PFPVLARSSFGIKGAHIPTLLRALVGCGWYGIETWIGGEAVFLLLPKFIKQ 182 (538)
Q Consensus 105 l~aiiiG~~i~~~~~~l~g~~G~k~Gl--~~~v~sR~~FG~~Gs~lp~li~~i~~igW~~v~~~~gg~al~~~l~~~~~~ 182 (538)
+++.+++.+...+.....+.++.++-. +.....|..||.+-+++-.....+ +|....+ ....+....+...++.
T Consensus 50 ~~~~li~~i~~l~~als~aEL~s~~P~aGG~Y~~~~~~~g~~~gf~~gW~~~~---~~~~~~~-~~~~~~~~~~~~~~~~ 125 (475)
T TIGR03428 50 FWTWPVVFVGQLLVALNFAELAARYPISGAIYQWSRRMGGEVIGWFAGWFMII---AQIVTAA-AAAIALQVVLPNIWSG 125 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHcCccccHHHHHHHHH---HHHHHHH-HHHHHHHHHHHHHhhh
Confidence 444444444433333334444444322 345667788887666655444443 3332111 1122222233222211
Q ss_pred ccccccCCCCC-C-CChhHHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHHHH
Q 009276 183 SSILSQSLPWL-G-TSPLEFACFIAFWLAQLAIVWKGIEGIRELEKYSAPILII 234 (538)
Q Consensus 183 ~~~~~~~~p~~-g-~t~~~~i~~ii~~~l~~~~~~~G~~~i~~~~~~~~p~~~v 234 (538)
......+.... . .....++..+++.++...+-.+|.|...+++++...+.++
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~g~k~~~~i~~~~~~~~i~ 179 (475)
T TIGR03428 126 FQIIGEDPTLTSPSGAANAVLLGSVLLVLTTVINCIGVEWMSRVNTIGVTCEIV 179 (475)
T ss_pred hhhcccCccccCCCchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 11000000000 0 0011233334444556677889999999999887655433
No 81
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=76.03 E-value=1.4e+02 Score=33.39 Aligned_cols=49 Identities=8% Similarity=0.096 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHHHHHHHHHHHHHHHhc
Q 009276 199 EFACFIAFWLAQLAIVWKGIEGIRELEKYSAPILIILTSSFLFWAYVNA 247 (538)
Q Consensus 199 ~~i~~ii~~~l~~~~~~~G~~~i~~~~~~~~p~~~v~~i~l~~~~~~~~ 247 (538)
+++.+..+..++.++..++.|.+++++++.....++.++..++++.+..
T Consensus 177 ~~~v~~ai~~v~~lln~~p~r~l~~I~~~~~~~~ll~~~i~~I~lla~~ 225 (550)
T KOG1289|consen 177 QFGVFEAILFVHGLLNSLPTRVLARINSVSVYLNLLFLVILMITLLAAS 225 (550)
T ss_pred eehHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 4566666667777888899999999999998877766666666666543
No 82
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]
Probab=70.62 E-value=1.7e+02 Score=31.96 Aligned_cols=46 Identities=17% Similarity=0.226 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHHHHHHHHHHHHHH
Q 009276 199 EFACFIAFWLAQLAIVWKGIEGIRELEKYSAPILIILTSSFLFWAY 244 (538)
Q Consensus 199 ~~i~~ii~~~l~~~~~~~G~~~i~~~~~~~~p~~~v~~i~l~~~~~ 244 (538)
.++.-++..++...+.+-|.+.|.++.....|.+.+.-+....+.+
T Consensus 183 ~~~~gi~la~l~~~VI~GGi~rIa~v~~~vVPfMA~~Yi~~~~~Ii 228 (452)
T COG1115 183 PLVTGIVLALLVALVIFGGIKRIAKVSSKVVPFMAILYVLVALVII 228 (452)
T ss_pred HHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455566777788899999999999999998766555444333
No 83
>PRK03356 L-carnitine/gamma-butyrobetaine antiporter; Provisional
Probab=65.66 E-value=2.2e+02 Score=31.59 Aligned_cols=124 Identities=12% Similarity=0.031 Sum_probs=59.7
Q ss_pred hhhhccCcHHHHHHHHHHHHHHHHHHHHhhcccccccCCCc---ceehhhhhcccc--chHHHHHH---HHHHHHHHHHH
Q 009276 93 CLVDLGMAWWQGIATVVAANVILLVPLVLTGHPGTKYGIPF---PVLARSSFGIKG--AHIPTLLR---ALVGCGWYGIE 164 (538)
Q Consensus 93 s~~~~GLs~~qal~aiiiG~~i~~~~~~l~g~~G~k~Gl~~---~v~sR~~FG~~G--s~lp~li~---~i~~igW~~v~ 164 (538)
+++--|++.|..- ++.....++..+|.|.|. .-..|..+|.+. ..+..++- .+..++=.+.-
T Consensus 138 ~~fHWG~~aWaiY----------~~~~la~ay~~y~~~~p~l~iss~~~pllG~~~~~g~~G~~IDil~v~atv~GvatS 207 (504)
T PRK03356 138 SLFHWGPLPWATY----------SFLSVAFGYFFFVRKMDVIRPSSTLVPLVGEKHAKGLFGTIVDNFYLVALIFAMGTS 207 (504)
T ss_pred HHHHhcHHHHHHH----------HHHHHHHHHHHHhcCCCcccHHHHHHHHcCCCcccCchHHHHHHHHHHHHHHHHHHH
Confidence 5666688888422 112222445556777774 334456677431 12333333 33333222222
Q ss_pred HHHHHHHHHHHhhhhhhcccccccCCCCCCCChhHHHHHHHHHHHHHHHHhhch-hhHHHHHhhhhhHHHHHH
Q 009276 165 TWIGGEAVFLLLPKFIKQSSILSQSLPWLGTSPLEFACFIAFWLAQLAIVWKGI-EGIRELEKYSAPILIILT 236 (538)
Q Consensus 165 ~~~gg~al~~~l~~~~~~~~~~~~~~p~~g~t~~~~i~~ii~~~l~~~~~~~G~-~~i~~~~~~~~p~~~v~~ 236 (538)
.-+|..-++.-++.+++.. + +. ..+.+.++++.++.+..+..|. |.+|+++++-..+..+++
T Consensus 208 LGlg~~qi~~gl~~l~Gi~----~-----~~-~~~~~ii~~i~~if~~S~~~Gl~kGIk~LS~~N~~la~~ll 270 (504)
T PRK03356 208 LGLATPLVTECMQWLFGIP----H-----TL-QLDAIIITCWIILNAICVACGLQKGVRIASDVRSYLSFLML 270 (504)
T ss_pred HHhHHHHHHHHHHHHcCCC----C-----ch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2233333444444443321 1 11 1233334444555566677786 668888887765544443
No 84
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=62.11 E-value=1.9e+02 Score=31.46 Aligned_cols=105 Identities=19% Similarity=0.134 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccccccCCCcc----------eehhhhhccccchHHHHHHHHHHHHHHHH-HHHHHHHH
Q 009276 103 QGIATVVAANVILLVPLVLTGHPGTKYGIPFP----------VLARSSFGIKGAHIPTLLRALVGCGWYGI-ETWIGGEA 171 (538)
Q Consensus 103 qal~aiiiG~~i~~~~~~l~g~~G~k~Gl~~~----------v~sR~~FG~~Gs~lp~li~~i~~igW~~v-~~~~gg~a 171 (538)
..+.+-+++.++.++.-...++.|++..-.+. ..++..||..|..+-+++-.+.|. =.++ .+...++.
T Consensus 223 ~~~~ag~ia~~lL~~IY~gL~~lGa~~~~~~~~~~~g~~lL~~i~~~~~G~~G~~ll~iiv~lACL-TTaIGL~~a~a~y 301 (427)
T PF05525_consen 223 YTIKAGLIAGILLALIYGGLAYLGATSSGSFPDDINGAELLSQIANHLFGSAGQILLGIIVFLACL-TTAIGLISACAEY 301 (427)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCcccccCCCCHHHHHHHHHHHHcChhHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 34444555555555555556777777665432 245678999998876665544432 1111 11122333
Q ss_pred HHHHhhhhhhcccccccCCCCCCCChhHHHHHHHHHHHHHHHHhhchhhHHHHHh
Q 009276 172 VFLLLPKFIKQSSILSQSLPWLGTSPLEFACFIAFWLAQLAIVWKGIEGIRELEK 226 (538)
Q Consensus 172 l~~~l~~~~~~~~~~~~~~p~~g~t~~~~i~~ii~~~l~~~~~~~G~~~i~~~~~ 226 (538)
++... ++ .+ --...+++.+++..++-+|.+.|-++..
T Consensus 302 f~~~~----~k------------is--Y~~~v~i~~i~S~~ian~Gl~~Ii~~s~ 338 (427)
T PF05525_consen 302 FSELF----PK------------IS--YKVWVIIFTIFSFIIANLGLDQIIKISV 338 (427)
T ss_pred HHHHh----cc------------cC--hHHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 33332 21 01 1123455667888889999888765443
No 85
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom. The BCCT proteins contain 12 transmembrane regions and are energized by proton symport. They contain a conserved region with four tryptophans in their central region [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2WSX_B 3HFX_A 2WSW_A 4DOJ_B 2WIT_C 4AIN_A 3P03_B.
Probab=59.51 E-value=2.8e+02 Score=30.67 Aligned_cols=40 Identities=15% Similarity=0.182 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHhhch-hhHHHHHhhhhhHHHHHHHH
Q 009276 199 EFACFIAFWLAQLAIVWKGI-EGIRELEKYSAPILIILTSS 238 (538)
Q Consensus 199 ~~i~~ii~~~l~~~~~~~G~-~~i~~~~~~~~p~~~v~~i~ 238 (538)
+.+.++++.++.+..+..|. |.+|+++++-..+..++++.
T Consensus 219 ~~~ii~~~~~i~~~S~~~Gl~kGIk~LS~~n~~l~~~ll~~ 259 (485)
T PF02028_consen 219 QIIIIIVITVIFTISAVSGLDKGIKRLSNINVYLAFALLLF 259 (485)
T ss_dssp HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555556667788897 45999999887665554443
No 86
>COG1292 BetT Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane]
Probab=59.26 E-value=2.9e+02 Score=30.81 Aligned_cols=122 Identities=15% Similarity=0.214 Sum_probs=63.5
Q ss_pred hhhhccCcHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcceeh--hhhhccc--cc--hHHHHHHHHHHHHHHHHHHH
Q 009276 93 CLVDLGMAWWQGIATVVAANVILLVPLVLTGHPGTKYGIPFPVLA--RSSFGIK--GA--HIPTLLRALVGCGWYGIETW 166 (538)
Q Consensus 93 s~~~~GLs~~qal~aiiiG~~i~~~~~~l~g~~G~k~Gl~~~v~s--R~~FG~~--Gs--~lp~li~~i~~igW~~v~~~ 166 (538)
+++-.|+..|. +-++.....++...|+|.|..+.+ |.-+|.| |- +..-++-.+..++=.+...-
T Consensus 140 tffHWG~~~Wa----------iY~lvalalaYf~~rk~~pl~lss~l~Pllg~~~~G~~G~~IDi~aiiaTl~GiATsLG 209 (537)
T COG1292 140 TFFHWGLHAWA----------IYALVALALAYFHYRKGLPLLLSSALYPLLGERIKGPIGHAVDILAIIATLFGIATSLG 209 (537)
T ss_pred HHHhhchHHHH----------HHHHHHHHhheeeEecCCCchhhhhhhhhhcccccCccchhhHHHHHHHHHHHHHHHHH
Confidence 45666888874 223333446678889999877322 2344444 11 13333444444433344444
Q ss_pred HHHHHHHHHhhhhhhcccccccCCCCCCCChhHHHHHHHHHHHHHHHHhhch-hhHHHHHhhhhhHHHH
Q 009276 167 IGGEAVFLLLPKFIKQSSILSQSLPWLGTSPLEFACFIAFWLAQLAIVWKGI-EGIRELEKYSAPILII 234 (538)
Q Consensus 167 ~gg~al~~~l~~~~~~~~~~~~~~p~~g~t~~~~i~~ii~~~l~~~~~~~G~-~~i~~~~~~~~p~~~v 234 (538)
+|+.-++..++.+++.. | ....+.+.+.+..++.+..+..|. |.+|+++++-..+..+
T Consensus 210 ~ga~qi~~Gl~~l~gip----~------~~~~q~~iI~vi~~~~~~S~~sGv~KGIr~LS~~n~~la~~ 268 (537)
T COG1292 210 LGALQLTAGLSYLFGIP----N------SFAVQAIIIAVITALFTISVWSGLDKGIRVLSNINMVLAFL 268 (537)
T ss_pred HhHHHHHHHHHHHhCCC----C------hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 45555555555544321 1 111233334444455566677887 7799988876654433
No 87
>PRK09950 putative transporter; Provisional
Probab=56.63 E-value=3.2e+02 Score=30.42 Aligned_cols=37 Identities=14% Similarity=0.104 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHhhch-hhHHHHHhhhhhHHHHHH
Q 009276 200 FACFIAFWLAQLAIVWKGI-EGIRELEKYSAPILIILT 236 (538)
Q Consensus 200 ~i~~ii~~~l~~~~~~~G~-~~i~~~~~~~~p~~~v~~ 236 (538)
.+.+.++.++.+..+..|. |.||+++++-..+..+++
T Consensus 230 ~~ii~vi~~if~~S~~~Gl~kGIk~LS~~N~~la~~ll 267 (506)
T PRK09950 230 AFVILLSGVIFCLSSYIGIDNGLQRLSKMVGWGAFLFA 267 (506)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3334455555666778887 779999888765544443
No 88
>PLN03074 auxin influx permease; Provisional
Probab=55.24 E-value=3.2e+02 Score=30.01 Aligned_cols=33 Identities=6% Similarity=-0.234 Sum_probs=20.5
Q ss_pred ceehhhhhccccchHHHHHHHHHHHHHHHHHHH
Q 009276 134 PVLARSSFGIKGAHIPTLLRALVGCGWYGIETW 166 (538)
Q Consensus 134 ~v~sR~~FG~~Gs~lp~li~~i~~igW~~v~~~ 166 (538)
..+.+..||.++.++..+...+..++...++..
T Consensus 123 ~e~~~~~~G~~~~~~~~~~~~v~l~~~~v~~li 155 (473)
T PLN03074 123 FEVLDGLLGPYWKNVGLAFNCTFLLFGSVIQLI 155 (473)
T ss_pred HHHHHHhcChhHHHHHHHHHhhhhHHHHHHHHH
Confidence 445566788888777666666555555444443
No 89
>PRK09928 choline transport protein BetT; Provisional
Probab=55.04 E-value=3.9e+02 Score=30.90 Aligned_cols=37 Identities=22% Similarity=0.219 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHhhch-hhHHHHHhhhhhHHHHH
Q 009276 199 EFACFIAFWLAQLAIVWKGI-EGIRELEKYSAPILIIL 235 (538)
Q Consensus 199 ~~i~~ii~~~l~~~~~~~G~-~~i~~~~~~~~p~~~v~ 235 (538)
+.+.++++.++.+..+..|. |.||+++.+-..+.+++
T Consensus 236 q~~ii~vi~~i~~~S~~sGl~KGIk~LS~lN~~La~~L 273 (679)
T PRK09928 236 QAALIALSVIIATISVTSGVNKGIRVLSELNVLLALGL 273 (679)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555666677886 66888888766544433
No 90
>KOG3660 consensus Sodium-neurotransmitter symporter [Signal transduction mechanisms]
Probab=54.23 E-value=3.9e+02 Score=30.65 Aligned_cols=46 Identities=17% Similarity=0.429 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHHHHHHHHHHHHHH
Q 009276 199 EFACFIAFWLAQLAIVWKGIEGIRELEKYSAPILIILTSSFLFWAY 244 (538)
Q Consensus 199 ~~i~~ii~~~l~~~~~~~G~~~i~~~~~~~~p~~~v~~i~l~~~~~ 244 (538)
..+|..+.|++.....++|.|...|...+.+-+-.++++.+++-.+
T Consensus 216 L~~~l~~~Wliv~~~i~KGvks~GKvvY~~a~fPyviL~iLliRgv 261 (629)
T KOG3660|consen 216 LALCLALAWLIVFFCIWKGVKSSGKVVYFTATFPYVILIVLLIRGV 261 (629)
T ss_pred HHHHHHHHHHHHHHHHhhcccccCcEEEEEehhHHHHHHHHHHHHc
Confidence 3468888999999999999999999888876554444444544444
No 91
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=54.13 E-value=3.7e+02 Score=30.33 Aligned_cols=30 Identities=17% Similarity=0.121 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHhhchhhHHHHHhhhh
Q 009276 200 FACFIAFWLAQLAIVWKGIEGIRELEKYSA 229 (538)
Q Consensus 200 ~i~~ii~~~l~~~~~~~G~~~i~~~~~~~~ 229 (538)
++++++...+..+..+.+.|-.....++..
T Consensus 162 fla~~v~in~~gv~~~ge~ef~~~~~kvl~ 191 (554)
T KOG1286|consen 162 FLAFILIINLFGVLAYGEVEFSLAFNKILT 191 (554)
T ss_pred HHHHHHHHHHHHHhhccceeehHHHHHHHH
Confidence 334444333333444455666666666544
No 92
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=42.58 E-value=4.5e+02 Score=28.04 Aligned_cols=24 Identities=21% Similarity=0.317 Sum_probs=17.6
Q ss_pred eehhhhhccccchHHHHHHHHHHH
Q 009276 135 VLARSSFGIKGAHIPTLLRALVGC 158 (538)
Q Consensus 135 v~sR~~FG~~Gs~lp~li~~i~~i 158 (538)
..++..||..|..+-+++-.+.+.
T Consensus 259 ~~a~~~~G~~G~~ll~i~v~lACL 282 (378)
T TIGR00796 259 AYSQHLFGSLGSFLLGLIITLACL 282 (378)
T ss_pred HHHHHHcchhHHHHHHHHHHHHHH
Confidence 346788999999887776665553
No 93
>PRK15015 carbon starvation protein A; Provisional
Probab=39.14 E-value=4.1e+02 Score=30.54 Aligned_cols=83 Identities=13% Similarity=0.144 Sum_probs=55.5
Q ss_pred cccCCCCCCCCCCcc-ch--------------hhhhccCcHHHHHHHHHHHHHHHHHHHHhhccc--ccccCCCcceehh
Q 009276 76 LRNEDLKPSTINERT-FS--------------CLVDLGMAWWQGIATVVAANVILLVPLVLTGHP--GTKYGIPFPVLAR 138 (538)
Q Consensus 76 ~~n~dl~Pip~~~Rt-w~--------------s~~~~GLs~~qal~aiiiG~~i~~~~~~l~g~~--G~k~Gl~~~v~sR 138 (538)
-.|++.|-+|.+++. ++ -.++.-.++.-+++=+++|+++.+..-=..+.+ =.+-|-+-..+.|
T Consensus 73 ~~~DG~DYvPt~k~VLfGHHFasIAGAGPivGPvlAa~~GwlP~~LWIl~G~vf~GaVhD~~~L~~S~R~~GrSig~ia~ 152 (701)
T PRK15015 73 RHNDGLDYVPTDKKVLFGHHFAAIAGAGPLVGPVLAAQMGYLPGMIWLLAGVVLAGAVQDFMVLFVSTRRDGRSLGELVK 152 (701)
T ss_pred ECCCCCCcCcCCccchhHHHHHHHhccCccHHHHHHHHHcchHHHHHHHHcceeechhhhhhheeeeecCCCccHHHHHH
Confidence 357889999988886 55 123445667778888888888876652222221 2356788888999
Q ss_pred hhhccccchHHHHHHHHHHH
Q 009276 139 SSFGIKGAHIPTLLRALVGC 158 (538)
Q Consensus 139 ~~FG~~Gs~lp~li~~i~~i 158 (538)
.-.|.+|..+..+...+..+
T Consensus 153 ~~iG~~~~~lfli~i~~ili 172 (701)
T PRK15015 153 EEMGPTAGVIALVACFMIMV 172 (701)
T ss_pred HHhhHHHHHHHHHHHHHHHH
Confidence 99999998876554444433
No 94
>KOG4812 consensus Golgi-associated protein/Nedd4 WW domain-binding protein [General function prediction only]
Probab=32.65 E-value=1.5e+02 Score=29.51 Aligned_cols=27 Identities=15% Similarity=0.133 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHhhchhhHHHHHhh
Q 009276 201 ACFIAFWLAQLAIVWKGIEGIRELEKY 227 (538)
Q Consensus 201 i~~ii~~~l~~~~~~~G~~~i~~~~~~ 227 (538)
..+++++.+.++-.++++-++||+++-
T Consensus 227 wi~~vlG~ll~lr~~i~YikVrrm~~~ 253 (262)
T KOG4812|consen 227 WIFLVLGLLLFLRGFINYIKVRRMEEK 253 (262)
T ss_pred HHHHHHHHHHHHHHHHhHHHHhhHHHH
Confidence 345556666677788889999988763
No 95
>PF04306 DUF456: Protein of unknown function (DUF456); InterPro: IPR007403 This is a family of putative membrane proteins.
Probab=25.92 E-value=3.7e+02 Score=24.32 Aligned_cols=23 Identities=22% Similarity=0.540 Sum_probs=18.2
Q ss_pred HHHhhhHhHHHHHHhhhhhhhhcCC
Q 009276 418 VGYSALLGPIGGIILADYYLIQGAK 442 (538)
Q Consensus 418 ~~lg~~l~P~~gI~l~Dy~liRr~~ 442 (538)
.-+|.+++|+.|+++.|+ +|+|+
T Consensus 80 ~p~G~iiG~~~Ga~l~El--~~~~~ 102 (140)
T PF04306_consen 80 PPLGLIIGPFLGAFLGEL--LRGKD 102 (140)
T ss_pred hHHHHHHHHHHHHHHHHH--HhCCC
Confidence 345889999999999998 45553
No 96
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex. This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane
Probab=24.98 E-value=6.3e+02 Score=26.94 Aligned_cols=82 Identities=10% Similarity=0.120 Sum_probs=53.5
Q ss_pred cccCCCCCCCCCCcc-ch--------------hhhhccCcHHHHHHHHHHHHHHHHHHHHhhc-ccc-cccCCCcceehh
Q 009276 76 LRNEDLKPSTINERT-FS--------------CLVDLGMAWWQGIATVVAANVILLVPLVLTG-HPG-TKYGIPFPVLAR 138 (538)
Q Consensus 76 ~~n~dl~Pip~~~Rt-w~--------------s~~~~GLs~~qal~aiiiG~~i~~~~~~l~g-~~G-~k~Gl~~~v~sR 138 (538)
-.|++.|-+|.++.. ++ -.++.-.+|.-+++=+++|+++.+..-=..+ ... .+-|-+...+.|
T Consensus 42 ~~~DGvDYvP~~~~vlfghhf~sIAGaGPI~GPi~aa~~GwlPa~lWI~~G~if~GaVHD~~sl~~SvR~~G~Si~~i~~ 121 (376)
T PF02554_consen 42 TMNDGVDYVPTNKWVLFGHHFASIAGAGPIVGPILAAQFGWLPALLWIVFGCIFAGAVHDYGSLMASVRHKGKSIGEIAG 121 (376)
T ss_pred ECCCCCCCCCCchHHhhHHHHHHHhccccchHHHHHHHhcchHHHHHHHHccHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 347788888877654 44 1234445666688888999988876522222 122 345778888899
Q ss_pred hhhccccchHHHHHHHHHH
Q 009276 139 SSFGIKGAHIPTLLRALVG 157 (538)
Q Consensus 139 ~~FG~~Gs~lp~li~~i~~ 157 (538)
.-.|.++.++-.+...+..
T Consensus 122 ~~lG~~~~~lf~~f~~~~l 140 (376)
T PF02554_consen 122 KYLGKRAKKLFLIFIFFLL 140 (376)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999988877665554443
No 97
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=23.87 E-value=9.8e+02 Score=26.21 Aligned_cols=38 Identities=5% Similarity=0.137 Sum_probs=21.1
Q ss_pred hhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009276 140 SFGIKGAHIPTLLRALVGCGWYGIETWIGGEAVFLLLP 177 (538)
Q Consensus 140 ~FG~~Gs~lp~li~~i~~igW~~v~~~~gg~al~~~l~ 177 (538)
.+|.++..+....-.+.++|...+=....++-+.+++.
T Consensus 133 ~~g~~~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~ 170 (449)
T KOG1304|consen 133 KYGPAARFVVNFFLVITQLGFCCVYLVFVATNLKQIVD 170 (449)
T ss_pred hhcHHHHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHh
Confidence 34444444555555566666666655555666656554
No 98
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=23.85 E-value=9.7e+02 Score=26.15 Aligned_cols=25 Identities=4% Similarity=0.024 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHhhchhhHHHHHh
Q 009276 202 CFIAFWLAQLAIVWKGIEGIRELEK 226 (538)
Q Consensus 202 ~~ii~~~l~~~~~~~G~~~i~~~~~ 226 (538)
..+++.+++.+++.+|.+.+-++..
T Consensus 317 ~v~i~~l~S~~lSn~G~~~II~~s~ 341 (439)
T PRK15433 317 LVFILGGFSMVVSNLGLSQLIQISV 341 (439)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 4456677888899999988776544
No 99
>KOG1291 consensus Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=23.14 E-value=7.5e+02 Score=27.28 Aligned_cols=40 Identities=18% Similarity=0.203 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccccCCCcceehhhhhcc
Q 009276 104 GIATVVAANVILLVPLVLTGHPGTKYGIPFPVLARSSFGI 143 (538)
Q Consensus 104 al~aiiiG~~i~~~~~~l~g~~G~k~Gl~~~v~sR~~FG~ 143 (538)
-++.+++.|+++.++=.+.++.|..+|......||.-+-.
T Consensus 62 LLwilL~a~~~alllQ~LaARLGvVTG~hLAe~Cr~~Ypk 101 (503)
T KOG1291|consen 62 LLWILLLANFMALLLQRLAARLGVVTGKHLAEICREEYPK 101 (503)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHccc
Confidence 3566777888888888899999999999999999976644
No 100
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=21.18 E-value=1.1e+03 Score=25.69 Aligned_cols=109 Identities=21% Similarity=0.188 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccccccC-------CCccee---hhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009276 103 QGIATVVAANVILLVPLVLTGHPGTKYG-------IPFPVL---ARSSFGIKGAHIPTLLRALVGCGWYGIETWIGGEAV 172 (538)
Q Consensus 103 qal~aiiiG~~i~~~~~~l~g~~G~k~G-------l~~~v~---sR~~FG~~Gs~lp~li~~i~~igW~~v~~~~gg~al 172 (538)
+.+.+-++..+..+..-...++.|+..+ -+..++ ++..||..|+.+-.++-.+.|.- .++... .+.
T Consensus 225 ~~~~aglIa~i~La~iY~~L~ylGa~s~~~~~~~~nG~~IL~~~s~~~fG~~G~~lL~~iv~lACLT-TaiGLi---~a~ 300 (431)
T COG1114 225 YTIKAGLIAAILLALIYLSLFYLGATSASAAGLAANGGQILSAYSQHLFGSYGSILLGLIVFLACLT-TAVGLI---VAC 300 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchHhhcccccchHHHHHHHHHHHhchhhHHHHHHHHHHHHHH-HHHHHH---HHH
Confidence 4444444444444555555666664433 133334 45789999998766655544321 111100 012
Q ss_pred HHHhhhhhhcccccccCCCCCCCChhHHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHH
Q 009276 173 FLLLPKFIKQSSILSQSLPWLGTSPLEFACFIAFWLAQLAIVWKGIEGIRELEKYSAPIL 232 (538)
Q Consensus 173 ~~~l~~~~~~~~~~~~~~p~~g~t~~~~i~~ii~~~l~~~~~~~G~~~i~~~~~~~~p~~ 232 (538)
.+-+++..|. .+=.. +..++.+.+..++-.|.+++- +++.|++
T Consensus 301 aefF~~~~p~------------~SY~~--~v~if~i~sflvan~GL~~Ii---~isvPvL 343 (431)
T COG1114 301 AEFFSKLVPK------------LSYKT--WVIIFTLISFLVANLGLEQII---KISVPVL 343 (431)
T ss_pred HHHHHHhccc------------ccHHH--HHHHHHHHHHHHHHhhHHHHH---HHHHHHH
Confidence 2223333331 11112 345677788888888877765 4455554
No 101
>COG4146 Predicted symporter [General function prediction only]
Probab=20.22 E-value=1.1e+03 Score=25.42 Aligned_cols=48 Identities=19% Similarity=0.537 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHhhhcchhHHHHHHHHH-hhhHhHHHHHHhhhhhhhh
Q 009276 390 AILTALLGIAFQPWRLLKSSESFVYTWLVGY-SALLGPIGGIILADYYLIQ 439 (538)
Q Consensus 390 ~ii~avl~~~l~pw~l~~~~~~fl~~fL~~l-g~~l~P~~gI~l~Dy~liR 439 (538)
....++++.+++||-.++. +.. +.|+--+ |..-.|+.+++++.+|.-|
T Consensus 382 ~a~~Ai~sv~iaP~i~~ap-qGl-y~~~k~~nGfynvPiva~~ivGfF~k~ 430 (571)
T COG4146 382 GAFIAIVSVLIAPWIANAP-QGL-YSWMKQLNGFYNVPIVAIIIVGFFFKR 430 (571)
T ss_pred HHHHHHHHHHHHHHHhcCc-chH-HHHHHHhcCcccchhHHHHHHHHHHhh
Confidence 3445677788999966543 332 2343322 4566799999999998633
Done!