Query 009276
Match_columns 538
No_of_seqs 182 out of 1406
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 22:50:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009276.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009276hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jln_A MHP1; hydantoin, transp 100.0 6.8E-68 2.3E-72 577.0 33.8 403 72-524 8-450 (501)
2 3l1l_A Arginine/agmatine antip 98.2 0.00031 1.1E-08 73.8 26.2 122 104-239 42-165 (445)
3 3dh4_A Sodium/glucose cotransp 98.0 0.0014 4.8E-08 71.2 26.8 101 131-250 83-185 (530)
4 3gia_A Uncharacterized protein 98.0 0.0058 2E-07 64.0 28.9 127 103-245 40-171 (444)
5 4djk_A Probable glutamate/gamm 97.7 0.025 8.6E-07 60.3 29.9 90 131-231 73-162 (511)
6 2xq2_A Sodium/glucose cotransp 97.5 0.022 7.4E-07 62.7 26.2 103 128-249 108-213 (593)
7 2a65_A Leutaa, Na(+):neurotran 96.0 0.12 4E-06 55.8 15.8 51 198-248 167-218 (519)
8 4ain_A Glycine betaine transpo 37.8 3.4E+02 0.012 28.9 13.1 118 93-230 145-271 (539)
9 2wsw_A BCCT family betaine/car 24.2 6.5E+02 0.022 26.5 16.0 35 199-233 237-272 (509)
10 3fix_A N-acetyltransferase; te 12.4 45 0.0015 28.7 0.0 15 10-24 1-15 (183)
No 1
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=100.00 E-value=6.8e-68 Score=576.95 Aligned_cols=403 Identities=25% Similarity=0.426 Sum_probs=350.2
Q ss_pred CCCccccCCCCCCCCCCccch----------------------hhhhccCcHHHHHHHHHHHHHHHHHHHHhhccccccc
Q 009276 72 PHLTLRNEDLKPSTINERTFS----------------------CLVDLGMAWWQGIATVVAANVILLVPLVLTGHPGTKY 129 (538)
Q Consensus 72 ~~~~~~n~dl~Pip~~~Rtw~----------------------s~~~~GLs~~qal~aiiiG~~i~~~~~~l~g~~G~k~ 129 (538)
.++++||+|++|+|+|||+|+ .+.+ ||++||+++++++|++++++++++++.+|+|+
T Consensus 8 ~~~~~e~~~i~pvp~~~R~~~~~~~~~~W~g~~~~i~~~~~Ga~~~~-GLs~~~a~lai~lG~li~~~~~~l~~~~G~~~ 86 (501)
T 2jln_A 8 EARSLLNPSNAPTRYAERSVGPFSLAAIWFAMAIQVAIFIAAGQMTS-SFQVWQVIVAIAAGCTIAVILLFFTQSAAIRW 86 (501)
T ss_dssp CCCBCCCSTTSCCCGGGCCBCHHHHHHHHHHHHCSTHHHHHHHHHTT-TSCHHHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred CCCccccCCCCCCChhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhc-CcCHHHHHHHHHHHHHHHHHHHHHHhHHHhhc
Confidence 356799999999999999987 2344 99999999999999999999999999999999
Q ss_pred CCCcceehhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccCCCCCCCChhHHHHHHHHHHH
Q 009276 130 GIPFPVLARSSFGIKGAHIPTLLRALVGCGWYGIETWIGGEAVFLLLPKFIKQSSILSQSLPWLGTSPLEFACFIAFWLA 209 (538)
Q Consensus 130 Gl~~~v~sR~~FG~~Gs~lp~li~~i~~igW~~v~~~~gg~al~~~l~~~~~~~~~~~~~~p~~g~t~~~~i~~ii~~~l 209 (538)
|+|+++++|.+||++|+++|+++|.++++||+++|++.+|++++.+++.+++. . ..++++++++++
T Consensus 87 Gl~~~v~~R~~FG~~Gs~i~~ll~~i~~igw~~v~~~~gg~al~~~~~~~~g~-------------~-~~~v~~~i~~~l 152 (501)
T 2jln_A 87 GINFTVAARMPFGIRGSLIPITLKALLSLFWFGFQTWLGALALDEITRLLTGF-------------T-NLPLWIVIFGAI 152 (501)
T ss_dssp CCCHHHHTTTTSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------------C-CHHHHHHHHHHH
T ss_pred CCChhhhhHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-------------c-hHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988766521 1 157899999999
Q ss_pred HHHHHhhchhhHHHHHhhhhhHHHHHHHHHHHHHHHhcCCC--cccccccccCCchhhHHHHHHHHHHHHHHHHhHhccc
Q 009276 210 QLAIVWKGIEGIRELEKYSAPILIILTSSFLFWAYVNAGGF--GHMLSKSSKLSSSEFWSLFFPSLTANISFWATVALNI 287 (538)
Q Consensus 210 ~~~~~~~G~~~i~~~~~~~~p~~~v~~i~l~~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~ai~~~ig~~~~~~~~~ 287 (538)
+++++++|+|.++++++++.|+++++++++.+|.+.+.+ . ++..+.++. ..++.++.+++.++++++++++++
T Consensus 153 ~~~~~~~G~~~i~~~~~~~~p~~~i~~i~~~~~~l~~~g-~~~~~~~~~~~~----~~~~~f~~ai~~~~~~~~~~~~~~ 227 (501)
T 2jln_A 153 QVVTTFYGITFIRWMNVFASPVLLAMGVYMVYLMLDGAD-VSLGEVMSMGGE----NPGMPFSTAIMIFVGGWIAVVVSI 227 (501)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-CCHHHHTTCCCS----SCCSCHHHHHHHHHTTTHHHHTTT
T ss_pred HHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CcchhhhccCCc----cchHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999888888887755 3 333332221 123457788888899999999999
Q ss_pred cccccccccCCc------------chhhc-hhhhHHHHHHHHHHHHHhhhhhhhhhccccCHHHHHHH-hhhhHH-HHHH
Q 009276 288 PDFTRYAKSQND------------QILGQ-AGLPIFMGAFTFVGLAITCSTQVIFGRVISSPIQLLDQ-IGGITT-RILG 352 (538)
Q Consensus 288 sDysRy~k~~~~------------~~~g~-~g~p~~~~~~~~~G~~~~~a~~~~~G~~~~dp~~~l~~-~g~~~~-~~~~ 352 (538)
+||+||+|++++ ..+++ +|+++...++.++|++++.+ +..|||.+++.+ ++++.. .+++
T Consensus 228 ~DysRy~~~~~~~~~~~~~~~~~~~~~g~~lG~~i~~~~~~~lG~~~~~~------~~~~dp~~~l~~~l~~~~~~~~~~ 301 (501)
T 2jln_A 228 HDIVKECKVDPNASREGQTKADARYATAQWLGMVPASIIFGFIGAASMVL------VGEWNPVIAITEVVGGVSIPMAIL 301 (501)
T ss_dssp HHHHTTBCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HSCSCHHHHHHHHHTCCCHHHHHH
T ss_pred CcccccCCCCccccccchhhccchHHHHHHHHHHHHHHHHHHHHHHHHHh------ccccCHHHHHHHHhccchHHHHHH
Confidence 999999999999 78888 89999988899999876653 235899999887 444433 5777
Q ss_pred H-HHHHHHHHHHhhhhhhhhhHHhHhhhcCcccccchhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHhhhHhHHHHHH
Q 009276 353 I-IGISLATITTNIAANVVAPANALVNLRPSIFTFRKGAILTALLGIAFQPWRLLKSSESFVYTWLVGYSALLGPIGGII 431 (538)
Q Consensus 353 ~-l~i~la~i~~Ni~~N~ys~~~~l~~l~pk~~~~~r~~ii~avl~~~l~pw~l~~~~~~fl~~fL~~lg~~l~P~~gI~ 431 (538)
+ ++++++++++|+.+|.||+++++++++||++++|++.+++++++++++||+ +.+.|. +||+.+|++++||+||+
T Consensus 302 ~~~~~~la~i~tn~~~n~ys~~~~l~~~~~~~i~~~~~~~i~~vi~~~i~~~~---~~~~f~-~FL~~lg~~l~P~~gI~ 377 (501)
T 2jln_A 302 FQVFVLLATWSTNPAANLLSPAYTLCSTFPRVFTFKTGVIVSAVVGLLMMPWQ---FAGVLN-TFLNLLASALGPLAGIM 377 (501)
T ss_dssp HHHHHHHHHHTTHHHHHTHHHHHHHHHHSTTTCCHHHHHHHHHHHHHHTCGGG---THHHHH-HHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHhCccccchhHHHHHHHHHHHHHHHHH---hHHHHH-HHHHHHHHHHHHHHHHH
Confidence 8 899999999997569999999999999998889999999999999999997 234555 89999999999999999
Q ss_pred hhhhhhhhcCCCCcccccccCCCCcccccCCCchHHHHHHHHHHhhccccccccccccccccccchhccchhHHHHHHHH
Q 009276 432 LADYYLIQGAKLSIKYLYSLNPNGAYYYSGGYNLVAIMALSIGILPVIPGFLQKVGLVVTIPNSFVVIYNNAWFFSFFLA 511 (538)
Q Consensus 432 l~Dy~liRr~~~~~~~Ly~~~~~g~Y~y~~G~N~~ai~A~~~G~~~~~pg~~~~~g~~~~~~~~~~~~~~~s~~~g~~vs 511 (538)
++|||++||++||++|+|+ |+|+|||++|+||+|++||++|+++++| .+|++|++|++++
T Consensus 378 l~Dy~i~rr~~~~~~~l~~--~~g~y~y~~g~n~~a~~a~~~G~~~~~~------------------~~~~~~~~g~~va 437 (501)
T 2jln_A 378 ISDYFLVRRRRISLHDLYR--TKGIYTYWRGVNWVALAVYAVALAVSFL------------------TPDLMFVTGLIAA 437 (501)
T ss_dssp HHHHHTTSTTCCCHHHHTB--SSSTTCTBTTBCHHHHHHHHHHHHHHHT------------------CGGGHHHHHHHHH
T ss_pred HHHHHhhhcccCChHHhhC--CCCccccCCCCCHHHHHHHHHHHHHHHH------------------HhhhHHHHHHHHH
Confidence 9999999999999999995 5799999999999999999999998654 2578999999999
Q ss_pred HHHHHHHhhccCC
Q 009276 512 GFVYWVLSLLRGK 524 (538)
Q Consensus 512 ~vvY~~l~~~~~~ 524 (538)
+++|++++|..++
T Consensus 438 ~v~Y~~l~~~~~~ 450 (501)
T 2jln_A 438 LLLHIPAMRWVAK 450 (501)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCch
Confidence 9999999977543
No 2
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=98.24 E-value=0.00031 Score=73.82 Aligned_cols=122 Identities=12% Similarity=-0.076 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccccCC--CcceehhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 009276 104 GIATVVAANVILLVPLVLTGHPGTKYGI--PFPVLARSSFGIKGAHIPTLLRALVGCGWYGIETWIGGEAVFLLLPKFIK 181 (538)
Q Consensus 104 al~aiiiG~~i~~~~~~l~g~~G~k~Gl--~~~v~sR~~FG~~Gs~lp~li~~i~~igW~~v~~~~gg~al~~~l~~~~~ 181 (538)
++++.+++.++........+..+.++-. +.....|..||.+.+.+......+..+...+.+....+ ..+...+|
T Consensus 42 ~~~~~li~~~~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~G~~~g~~~g~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 117 (445)
T 3l1l_A 42 AIYGWLVTIIGALGLSMVYAKMSFLDPSPGGSYAYARRCFGPFLGYQTNVLYWLACWIGNIAMVVIGV----GYLSYFFP 117 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCTTTHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHTTTTCG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCCCCchhhHHhHcCChHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHCc
Confidence 5566666665554444444444444322 45566788888765555544444433333333322222 22222222
Q ss_pred cccccccCCCCCCCChhHHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHHHHHHHHH
Q 009276 182 QSSILSQSLPWLGTSPLEFACFIAFWLAQLAIVWKGIEGIRELEKYSAPILIILTSSF 239 (538)
Q Consensus 182 ~~~~~~~~~p~~g~t~~~~i~~ii~~~l~~~~~~~G~~~i~~~~~~~~p~~~v~~i~l 239 (538)
.. +.....++..+++.++...+...|.|...+++.+..++.++..+.+
T Consensus 118 ~~----------~~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~~~~~ 165 (445)
T 3l1l_A 118 IL----------KDPWVLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLALIPIVGI 165 (445)
T ss_dssp GG----------GSHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cc----------cccHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHH
Confidence 21 0011233444444455566778999999999998877655444433
No 3
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=98.04 E-value=0.0014 Score=71.22 Aligned_cols=101 Identities=15% Similarity=0.135 Sum_probs=55.1
Q ss_pred CCcceehhhhhccccchHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhhhhcccccccCCCCCCCChhHHHHHHHHHHH
Q 009276 131 IPFPVLARSSFGIKGAHIPTLLRALV-GCGWYGIETWIGGEAVFLLLPKFIKQSSILSQSLPWLGTSPLEFACFIAFWLA 209 (538)
Q Consensus 131 l~~~v~sR~~FG~~Gs~lp~li~~i~-~igW~~v~~~~gg~al~~~l~~~~~~~~~~~~~~p~~g~t~~~~i~~ii~~~l 209 (538)
.+.+..-|.-||.+-..+-+++..+. .+.+.+.+.+.+|..++.+++ ++ .+.+.++..++
T Consensus 83 ~T~~e~l~~Rfg~~~~~~~a~~~l~~~~~~~~~~~l~~~~~~~~~~~G-----------------i~--~~~~i~i~~~i 143 (530)
T 3dh4_A 83 YTIPEFVEKRFNKKLKTILAVFWISLYIFVNLTSVLYLGGLALETILG-----------------IP--LMYSILGLALF 143 (530)
T ss_dssp CSHHHHHHHHTCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-----------------CC--HHHHHHHHHHH
T ss_pred ccHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----------------CC--HHHHHHHHHHH
Confidence 45566667777775444444333322 234556677777777766542 22 34555655555
Q ss_pred HHHH-HhhchhhHHHHHhhhhhHHHHHHHHHHHHHHHhcCCC
Q 009276 210 QLAI-VWKGIEGIRELEKYSAPILIILTSSFLFWAYVNAGGF 250 (538)
Q Consensus 210 ~~~~-~~~G~~~i~~~~~~~~p~~~v~~i~l~~~~~~~~~g~ 250 (538)
.+.. .+-|++..-+...+...++++..+.+.+..+.+.||.
T Consensus 144 ~~~Yt~~GGl~aV~~TD~iQ~~im~~g~~~v~~~~~~~~Gg~ 185 (530)
T 3dh4_A 144 ALVYSIYGGLSAVVWTDVIQVFFLVLGGFMTTYMAVSFIGGT 185 (530)
T ss_dssp HHHTTC------CCSHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCh
Confidence 4443 4568999988888888877766555555555555543
No 4
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=97.96 E-value=0.0058 Score=64.04 Aligned_cols=127 Identities=12% Similarity=0.028 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccccccCC--CcceehhhhhccccchHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhh
Q 009276 103 QGIATVVAANVILLVPLVLTGHPGTKYGI--PFPVLARSSFGIKGAHIPTLLRALVGCGW---YGIETWIGGEAVFLLLP 177 (538)
Q Consensus 103 qal~aiiiG~~i~~~~~~l~g~~G~k~Gl--~~~v~sR~~FG~~Gs~lp~li~~i~~igW---~~v~~~~gg~al~~~l~ 177 (538)
.++++.+++.++........+..+.++-. +.....|..||.+- +...+.+...+.| .+.+....++.+.
T Consensus 40 ~~~~~~li~~~~~~~~~~~~~el~~~~P~~Gg~y~~~~~~~G~~~--~~g~~~~~~~~~~~~~~a~~~~~~~~~~~---- 113 (444)
T 3gia_A 40 NLPETFILSGIYALLVAYSYTKLGAKIVSNAGPIAFIHKAIGDNI--ITGALSILLWMSYVISIALFAKGFAGYFL---- 113 (444)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHHTTCCCTTTHHHHHHHHHCSSH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHhHHHHhCcch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 35566666666555544445555554433 45677788888751 1112222222222 2222222222222
Q ss_pred hhhhcccccccCCCCCCCChhHHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHHHHHHHHHHHHHHH
Q 009276 178 KFIKQSSILSQSLPWLGTSPLEFACFIAFWLAQLAIVWKGIEGIRELEKYSAPILIILTSSFLFWAYV 245 (538)
Q Consensus 178 ~~~~~~~~~~~~~p~~g~t~~~~i~~ii~~~l~~~~~~~G~~~i~~~~~~~~p~~~v~~i~l~~~~~~ 245 (538)
..++.. .......+..+++.++...+...|.|...+++.+...+.++..+.+.+..+.
T Consensus 114 ~~~~~~----------~~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~~~~~ii~~~~ 171 (444)
T 3gia_A 114 PLINAP----------INTFNIAITEIGIVAFFTALNFFGSKAVGRAEFFIVLVKLLILGLFIFAGLI 171 (444)
T ss_dssp HHTTCC----------CCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCC----------CchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222211 0001112233444455566778899999999999887665555544444443
No 5
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=97.74 E-value=0.025 Score=60.27 Aligned_cols=90 Identities=8% Similarity=-0.105 Sum_probs=53.8
Q ss_pred CCcceehhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccCCCCCCCChhHHHHHHHHHHHH
Q 009276 131 IPFPVLARSSFGIKGAHIPTLLRALVGCGWYGIETWIGGEAVFLLLPKFIKQSSILSQSLPWLGTSPLEFACFIAFWLAQ 210 (538)
Q Consensus 131 l~~~v~sR~~FG~~Gs~lp~li~~i~~igW~~v~~~~gg~al~~~l~~~~~~~~~~~~~~p~~g~t~~~~i~~ii~~~l~ 210 (538)
=+.....|..||.+-+.+.....++..+.|.+.....++..+...+. .|.. + ......++..+++.++.
T Consensus 73 GG~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~p~~---~------~~~~~~~~~~~~~~~~~ 141 (511)
T 4djk_A 73 GGVFAWVSNTLGPRWGFAAISFGYLQIAIGFIPMLYFVLGALSYILK--WPAL---N------EDPITKTIAALIILWAL 141 (511)
T ss_dssp -CHHHHHHHHHCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTTTT--CGGG---T------SCSSHHHHHHHHHHHHH
T ss_pred CChhhhHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--Cccc---c------cCcHHHHHHHHHHHHHH
Confidence 35667778888887776766777777777777766555555432210 1211 1 00111334444445556
Q ss_pred HHHHhhchhhHHHHHhhhhhH
Q 009276 211 LAIVWKGIEGIRELEKYSAPI 231 (538)
Q Consensus 211 ~~~~~~G~~~i~~~~~~~~p~ 231 (538)
+.+..+|.|...+++++...+
T Consensus 142 ~~in~~g~~~~~~~~~~~~~~ 162 (511)
T 4djk_A 142 ALTQFGGTKYTARIAKVGFFA 162 (511)
T ss_dssp HHHHHTCSSSHHHHTHHHHHH
T ss_pred HHHHHhChHHHHHHHHHHHHH
Confidence 677889999999999886543
No 6
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=97.54 E-value=0.022 Score=62.66 Aligned_cols=103 Identities=15% Similarity=0.131 Sum_probs=58.0
Q ss_pred ccC-CCcceehhhhhccccchHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhhhhcccccccCCCCCCCChhHHHHHHH
Q 009276 128 KYG-IPFPVLARSSFGIKGAHIPTLLRAL-VGCGWYGIETWIGGEAVFLLLPKFIKQSSILSQSLPWLGTSPLEFACFIA 205 (538)
Q Consensus 128 k~G-l~~~v~sR~~FG~~Gs~lp~li~~i-~~igW~~v~~~~gg~al~~~l~~~~~~~~~~~~~~p~~g~t~~~~i~~ii 205 (538)
|.| .+.+..-+.-||.+-..+.+++..+ ..+.+.+.|.+.+|.+++.+++ .+ .+.+.++
T Consensus 108 r~~~~T~~e~l~~Rfg~~~~~~~ai~~l~~~~~~~~~~~l~~~~~~l~~~~G-----------------i~--~~~~i~i 168 (593)
T 2xq2_A 108 EKGIYTIPEFVEKRFNKKLKTILAVFWISLYIFVNLTSVLYLGGLALETILG-----------------IP--LMYSILG 168 (593)
T ss_dssp HTTCCSHHHHHHHHTCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHC-----------------CC--HHHHHHH
T ss_pred hCCCCCcHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----------------cc--HHHHHHH
Confidence 444 3344555666776544444444333 2345678888888888777643 11 2445555
Q ss_pred HHHHH-HHHHhhchhhHHHHHhhhhhHHHHHHHHHHHHHHHhcCC
Q 009276 206 FWLAQ-LAIVWKGIEGIRELEKYSAPILIILTSSFLFWAYVNAGG 249 (538)
Q Consensus 206 ~~~l~-~~~~~~G~~~i~~~~~~~~p~~~v~~i~l~~~~~~~~~g 249 (538)
..++. +.....|++..-+.+.+...++++..+.+.+..+.+.||
T Consensus 169 ~~~i~~~Yt~~GGl~av~~TD~iQ~iiml~~~l~v~~~~l~~~gg 213 (593)
T 2xq2_A 169 LALFALVYSIYGGLSAVVWTDVIQVFFLVLGGFMTTYMAVSFIGG 213 (593)
T ss_dssp HHHHHHHHHHTTC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 55543 444567899988888888877766665555555544444
No 7
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...
Probab=96.00 E-value=0.12 Score=55.83 Aligned_cols=51 Identities=22% Similarity=0.488 Sum_probs=43.4
Q ss_pred hHHHHHHHHHHHHHHHHhhch-hhHHHHHhhhhhHHHHHHHHHHHHHHHhcC
Q 009276 198 LEFACFIAFWLAQLAIVWKGI-EGIRELEKYSAPILIILTSSFLFWAYVNAG 248 (538)
Q Consensus 198 ~~~i~~ii~~~l~~~~~~~G~-~~i~~~~~~~~p~~~v~~i~l~~~~~~~~~ 248 (538)
...++.+++|++...+.+.|. +.++|..++.+|...++++.++++.+...|
T Consensus 167 ~~~~~~~~~w~i~~~ii~~Gv~kgiek~~~~~mp~l~vlliiL~ir~ltLpG 218 (519)
T 2a65_A 167 FAYIVFLITMFINVSILIRGISKGIERFAKIAMPTLFILAVFLVIRVFLLET 218 (519)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 345688899999999999999 789999999999999988888888775433
No 8
>4ain_A Glycine betaine transporter BETP; membrane protein, chemosensor and osmosensor, secondary TRAN sodium coupled transport; HET: FLC CM5; 3.10A {Corynebacterium glutamicum} PDB: 4doj_A* 2w8a_A 2wit_A 3p03_A
Probab=37.82 E-value=3.4e+02 Score=28.94 Aligned_cols=118 Identities=14% Similarity=0.068 Sum_probs=53.6
Q ss_pred hhhhccCcHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcceeh--hhhhcccc--chHHHHHHHHHHHH-HHHHHHH-
Q 009276 93 CLVDLGMAWWQGIATVVAANVILLVPLVLTGHPGTKYGIPFPVLA--RSSFGIKG--AHIPTLLRALVGCG-WYGIETW- 166 (538)
Q Consensus 93 s~~~~GLs~~qal~aiiiG~~i~~~~~~l~g~~G~k~Gl~~~v~s--R~~FG~~G--s~lp~li~~i~~ig-W~~v~~~- 166 (538)
+++-.|+..|.. - ++.....++...|.|.|..+-+ +--+|.|. ..+..++-.+..++ =+|+-+-
T Consensus 145 t~fHWG~~~WAi-Y---------av~glalaY~~yrk~~pl~iss~l~PllG~r~~~G~~G~~IDilav~atv~GvatSL 214 (539)
T 4ain_A 145 TMFHWTLHPWAI-Y---------AIVGLAIAYSTFRVGRKQLLSSAFVPLIGEKGAEGWLGKLIDILAIIATVFGTACSL 214 (539)
T ss_dssp HHHHHSHHHHHH-H---------HHHHHHHHCCCCCTCCCSCTTGGGHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcChHHHHH-H---------HHHHHHHHHHHhcCCCCCcHHHHhHhhcCCCccCCcchhhhHHHHHHHHHHHHhhhH
Confidence 566678888742 1 1122224566668888754432 45567541 12222333222211 1233222
Q ss_pred -HHHHHHHHHhhhhhhcccccc-cCCCCCCCChhHHHHHHHHHHHHHHHHhhch-hhHHHHHhhhhh
Q 009276 167 -IGGEAVFLLLPKFIKQSSILS-QSLPWLGTSPLEFACFIAFWLAQLAIVWKGI-EGIRELEKYSAP 230 (538)
Q Consensus 167 -~gg~al~~~l~~~~~~~~~~~-~~~p~~g~t~~~~i~~ii~~~l~~~~~~~G~-~~i~~~~~~~~p 230 (538)
+|+.-++.-++.+++. + + +. ..+.+.++++.++.+..+..|. |.||+++++-..
T Consensus 215 Glg~~Qi~~Gl~~lfGi----~~~-----~~-~~qi~ii~vit~i~~~Sa~sGl~kGIk~LS~~N~~ 271 (539)
T 4ain_A 215 GLGALQIGAGLSAANII----EDP-----SD-WTIVGIVSVLTLAFIFSAISGVGKGIQYLSNANMV 271 (539)
T ss_dssp HHHHHHHHHHHHHHC------CCC-----ST-TTTTHHHHHHHHHHHHHHHC---CCHHHHGGGHCC
T ss_pred HHHHHHHHHHHHHhcCC----CCC-----Ch-HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 2233333333333321 2 1 11 1233444555556667778887 668888777543
No 9
>2wsw_A BCCT family betaine/carnitine/choline transporter; transport protein, SD methionine, membrane protein; HET: CM5 1PE; 2.29A {Proteus mirabilis} PDB: 2wsx_A* 3hfx_A*
Probab=24.23 E-value=6.5e+02 Score=26.53 Aligned_cols=35 Identities=11% Similarity=0.141 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHhhch-hhHHHHHhhhhhHHH
Q 009276 199 EFACFIAFWLAQLAIVWKGI-EGIRELEKYSAPILI 233 (538)
Q Consensus 199 ~~i~~ii~~~l~~~~~~~G~-~~i~~~~~~~~p~~~ 233 (538)
+.+.++++.++.+..+..|. |.+|+++++-..+..
T Consensus 237 qi~ii~vit~~~~~Sa~sGl~kGIk~LS~~N~~la~ 272 (509)
T 2wsw_A 237 DAIIISCWILLNAICVAFGLQKGVKIASDVRTYLSF 272 (509)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 34444444555566678887 779998886654433
No 10
>3fix_A N-acetyltransferase; termoplasma acidophilum, structural GEN PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.30A {Thermoplasma acidophilum} PDB: 3f0a_A* 3k9u_A* 3ne7_A*
Probab=12.41 E-value=45 Score=28.68 Aligned_cols=15 Identities=27% Similarity=0.441 Sum_probs=0.0
Q ss_pred cccccccccccccCC
Q 009276 10 LHHHLQLSLPAAISP 24 (538)
Q Consensus 10 ~~~~~~~~~~~~~~~ 24 (538)
.|||-|+|+|...++
T Consensus 1 ~~~~~~~~~~~~~~~ 15 (183)
T 3fix_A 1 MHHHHHHSSGVDLGT 15 (183)
T ss_dssp ---------------
T ss_pred CCcccccccccccCc
Confidence 488888888765443
Done!