Query 009277
Match_columns 538
No_of_seqs 391 out of 2108
Neff 6.9
Searched_HMMs 46136
Date Thu Mar 28 22:35:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009277.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009277hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02518 pheophorbide a oxygen 100.0 9.7E-96 2E-100 791.8 46.2 440 73-538 75-538 (539)
2 PLN02281 chlorophyllide a oxyg 100.0 4.7E-54 1E-58 458.7 34.6 311 81-429 213-527 (536)
3 PLN00095 chlorophyllide a oxyg 100.0 1.2E-47 2.6E-52 393.6 26.5 285 82-390 66-371 (394)
4 COG4638 HcaE Phenylpropionate 100.0 9.4E-43 2E-47 367.2 21.4 325 73-430 12-358 (367)
5 TIGR03229 benzo_1_2_benA benzo 100.0 2.1E-34 4.6E-39 307.1 20.2 186 73-262 23-220 (433)
6 TIGR03228 anthran_1_2_A anthra 100.0 1.8E-34 3.8E-39 307.5 19.4 186 73-262 23-218 (438)
7 cd03480 Rieske_RO_Alpha_PaO Ri 100.0 2.8E-31 6E-36 242.5 14.0 130 73-204 2-132 (138)
8 cd04338 Rieske_RO_Alpha_Tic55 100.0 3E-31 6.6E-36 241.1 13.8 127 73-204 2-128 (134)
9 cd03537 Rieske_RO_Alpha_PrnD T 100.0 2.8E-30 6.2E-35 230.8 13.1 114 87-203 2-116 (123)
10 cd04337 Rieske_RO_Alpha_Cao Ca 100.0 7.4E-29 1.6E-33 224.0 12.4 117 78-204 7-123 (129)
11 cd03479 Rieske_RO_Alpha_PhDO_l 100.0 2.5E-28 5.4E-33 224.7 13.3 119 80-203 13-132 (144)
12 cd03531 Rieske_RO_Alpha_KSH Th 100.0 2.8E-28 6E-33 216.1 12.5 110 88-205 1-110 (115)
13 cd03545 Rieske_RO_Alpha_OHBDO_ 100.0 2.2E-28 4.8E-33 226.4 10.4 132 73-205 9-147 (150)
14 cd03548 Rieske_RO_Alpha_OMO_CA 100.0 7.8E-28 1.7E-32 219.4 13.8 118 80-203 6-125 (136)
15 cd03532 Rieske_RO_Alpha_VanA_D 100.0 6.1E-28 1.3E-32 214.2 12.0 111 85-204 2-112 (116)
16 cd03472 Rieske_RO_Alpha_BPDO_l 99.9 6E-28 1.3E-32 217.7 11.4 123 82-205 2-125 (128)
17 cd03539 Rieske_RO_Alpha_S5H Th 99.9 6.6E-28 1.4E-32 217.8 11.3 116 89-205 1-126 (129)
18 cd03541 Rieske_RO_Alpha_CMO Ri 99.9 4.2E-27 9.1E-32 209.1 12.2 113 88-204 1-114 (118)
19 cd03535 Rieske_RO_Alpha_NDO Ri 99.9 1.5E-26 3.3E-31 207.3 11.7 118 87-205 1-120 (123)
20 cd03538 Rieske_RO_Alpha_AntDO 99.9 1E-26 2.2E-31 214.4 10.1 130 74-204 8-142 (146)
21 cd03469 Rieske_RO_Alpha_N Ries 99.9 4.2E-26 9.1E-31 202.4 11.1 113 89-204 1-114 (118)
22 cd03536 Rieske_RO_Alpha_DTDO T 99.9 8.9E-26 1.9E-30 202.3 11.5 116 89-205 1-118 (123)
23 cd03542 Rieske_RO_Alpha_HBDO R 99.9 3.9E-24 8.5E-29 191.6 12.0 116 89-205 1-120 (123)
24 cd03528 Rieske_RO_ferredoxin R 99.9 9.3E-24 2E-28 181.3 12.4 96 89-199 1-97 (98)
25 cd03530 Rieske_NirD_small_Baci 99.9 1.6E-23 3.6E-28 180.0 11.9 97 89-200 1-98 (98)
26 cd03529 Rieske_NirD Assimilato 99.9 3.1E-23 6.6E-28 180.2 11.9 97 89-199 1-102 (103)
27 cd03474 Rieske_T4moC Toluene-4 99.9 9.7E-23 2.1E-27 178.4 13.1 102 89-205 1-103 (108)
28 TIGR02377 MocE_fam_FeS Rieske 99.9 1.5E-22 3.2E-27 175.3 12.4 99 88-200 1-100 (101)
29 TIGR02378 nirD_assim_sml nitri 99.9 1.7E-22 3.7E-27 176.0 11.5 99 88-200 1-104 (105)
30 PRK09965 3-phenylpropionate di 99.9 7.1E-22 1.5E-26 172.5 11.8 101 88-203 2-103 (106)
31 cd03478 Rieske_AIFL_N AIFL (ap 99.9 6.4E-22 1.4E-26 169.2 11.0 92 92-198 3-95 (95)
32 PRK09511 nirD nitrite reductas 99.8 1.3E-20 2.8E-25 165.1 12.3 100 88-200 3-107 (108)
33 PF13806 Rieske_2: Rieske-like 99.8 1.8E-20 3.9E-25 163.0 11.1 99 88-200 1-104 (104)
34 PF00355 Rieske: Rieske [2Fe-2 99.8 2.3E-20 4.9E-25 159.8 10.0 94 88-195 1-97 (97)
35 COG2146 {NirD} Ferredoxin subu 99.8 2.3E-19 4.9E-24 156.5 12.2 102 87-201 3-105 (106)
36 cd03467 Rieske Rieske domain; 99.8 2.8E-19 6E-24 153.6 11.8 92 89-194 1-93 (98)
37 cd03477 Rieske_YhfW_C YhfW fam 99.8 3.9E-19 8.4E-24 151.0 9.7 88 92-194 2-89 (91)
38 cd08878 RHO_alpha_C_DMO-like C 99.8 5.9E-18 1.3E-22 160.8 15.0 177 232-427 4-195 (196)
39 cd03476 Rieske_ArOX_small Smal 99.7 6.4E-17 1.4E-21 145.3 10.9 97 90-200 4-114 (126)
40 PF08417 PaO: Pheophorbide a o 99.7 6.3E-17 1.4E-21 137.7 8.1 92 301-405 1-92 (92)
41 cd03471 Rieske_cytochrome_b6f 99.7 8.2E-16 1.8E-20 137.4 11.7 89 100-204 22-114 (126)
42 cd00680 RHO_alpha_C C-terminal 99.7 1.6E-15 3.5E-20 143.1 14.2 170 232-428 3-187 (188)
43 cd03473 Rieske_CMP_Neu5Ac_hydr 99.6 1.4E-15 3E-20 131.2 8.7 72 95-169 14-89 (107)
44 cd08885 RHO_alpha_C_1 C-termin 99.6 2.7E-14 5.9E-19 136.8 16.2 170 232-428 4-189 (190)
45 TIGR02694 arsenite_ox_S arseni 99.6 6.1E-15 1.3E-19 132.9 10.5 95 90-198 7-114 (129)
46 cd08883 RHO_alpha_C_CMO-like C 99.6 6.4E-14 1.4E-18 133.0 15.7 166 233-428 5-174 (175)
47 cd03470 Rieske_cytochrome_bc1 99.5 8E-14 1.7E-18 125.3 10.8 93 94-199 5-125 (126)
48 cd08887 RHO_alpha_C_3 C-termin 99.5 4.4E-13 9.6E-18 127.5 14.6 169 232-428 4-184 (185)
49 cd08884 RHO_alpha_C_GbcA-like 99.4 1.2E-12 2.6E-17 127.4 14.2 169 232-428 14-204 (205)
50 cd08886 RHO_alpha_C_2 C-termin 99.4 1.4E-12 3.1E-17 124.6 13.9 167 232-426 4-181 (182)
51 PRK13474 cytochrome b6-f compl 99.4 2.1E-12 4.6E-17 122.9 11.4 87 99-201 73-163 (178)
52 PF00848 Ring_hydroxyl_A: Ring 99.4 1.3E-12 2.9E-17 124.7 7.4 170 233-429 11-208 (209)
53 TIGR01416 Rieske_proteo ubiqui 99.2 3.4E-11 7.3E-16 114.2 10.1 95 89-196 41-169 (174)
54 cd08882 RHO_alpha_C_MupW-like 99.0 3.5E-09 7.7E-14 105.9 10.6 90 336-429 144-243 (243)
55 cd08880 RHO_alpha_C_ahdA1c-lik 98.9 2.3E-08 5E-13 98.7 14.0 170 233-428 5-221 (222)
56 cd03475 Rieske_SoxF_SoxL SoxF 98.7 6E-08 1.3E-12 91.0 10.4 66 122-200 75-159 (171)
57 PF11723 Aromatic_hydrox: Homo 98.3 7.4E-06 1.6E-10 79.9 12.1 92 334-430 141-238 (240)
58 cd08879 RHO_alpha_C_AntDO-like 98.3 2.9E-06 6.2E-11 84.7 9.3 30 233-262 5-34 (237)
59 cd08881 RHO_alpha_C_NDO-like C 98.2 3.7E-06 8.1E-11 82.1 8.0 30 233-262 10-40 (206)
60 COG0723 QcrA Rieske Fe-S prote 97.9 3E-05 6.4E-10 74.0 7.7 64 123-199 100-164 (177)
61 KOG1671 Ubiquinol cytochrome c 97.4 0.00014 3.1E-09 69.0 4.5 74 95-170 92-191 (210)
62 TIGR03171 soxL2 Rieske iron-su 97.3 0.00048 1E-08 70.4 7.2 67 122-200 176-276 (321)
63 KOG1336 Monodehydroascorbate/f 94.7 0.017 3.8E-07 62.2 2.2 38 133-171 1-39 (478)
64 PF13490 zf-HC2: Putative zinc 69.9 3.1 6.7E-05 28.5 1.7 33 420-467 4-36 (36)
65 TIGR02949 anti_SigH_actin anti 67.7 8.4 0.00018 32.1 4.1 46 419-479 11-56 (84)
66 PLN02518 pheophorbide a oxygen 66.3 10 0.00022 42.6 5.6 80 450-532 458-537 (539)
67 PRK10853 putative reductase; P 64.8 4.3 9.3E-05 36.1 2.0 17 458-474 6-22 (118)
68 cd03034 ArsC_ArsC Arsenate Red 61.5 5.1 0.00011 35.1 1.8 18 458-475 5-22 (112)
69 cd03033 ArsC_15kD Arsenate Red 61.2 5.2 0.00011 35.3 1.8 17 458-474 6-22 (113)
70 PF03960 ArsC: ArsC family; I 60.0 5.5 0.00012 34.6 1.8 17 458-474 2-18 (110)
71 COG1393 ArsC Arsenate reductas 59.3 6 0.00013 35.2 1.9 17 458-474 7-23 (117)
72 PRK10026 arsenate reductase; P 58.6 6.1 0.00013 36.4 1.8 17 458-474 8-24 (141)
73 PF14015 DUF4231: Protein of u 57.8 76 0.0016 27.2 8.6 27 454-480 3-29 (112)
74 cd03035 ArsC_Yffb Arsenate Red 56.0 7.4 0.00016 33.8 1.9 17 458-474 5-21 (105)
75 TIGR00014 arsC arsenate reduct 54.1 8.1 0.00018 33.9 1.8 17 458-474 5-21 (114)
76 PRK13344 spxA transcriptional 51.4 9.8 0.00021 34.5 1.9 17 458-474 6-22 (132)
77 TIGR01616 nitro_assoc nitrogen 48.2 11 0.00025 33.8 1.8 17 458-474 7-23 (126)
78 cd03036 ArsC_like Arsenate Red 47.4 12 0.00026 32.6 1.8 17 458-474 5-21 (111)
79 PF09740 DUF2043: Uncharacteri 47.1 11 0.00024 33.1 1.5 36 122-160 63-99 (110)
80 PRK12559 transcriptional regul 41.9 16 0.00036 33.0 1.9 17 458-474 6-22 (131)
81 cd03032 ArsC_Spx Arsenate Redu 39.6 19 0.00041 31.5 1.8 17 458-474 6-22 (115)
82 cd02977 ArsC_family Arsenate R 37.1 22 0.00048 30.4 1.8 18 458-475 5-22 (105)
83 PRK01655 spxA transcriptional 37.0 22 0.00047 32.1 1.9 17 458-474 6-22 (131)
84 TIGR01617 arsC_related transcr 36.8 22 0.00049 31.1 1.9 17 458-474 5-21 (117)
85 KOG4684 Uncharacterized conser 30.4 90 0.0019 30.7 4.9 19 450-468 180-198 (275)
86 PF07627 PSCyt3: Protein of un 29.7 99 0.0021 26.8 4.6 48 422-469 28-79 (101)
87 KOG4684 Uncharacterized conser 28.4 11 0.00024 36.8 -1.6 19 451-469 92-110 (275)
88 cd03027 GRX_DEP Glutaredoxin ( 26.3 45 0.00097 26.2 1.8 17 459-475 8-24 (73)
89 PF04066 MrpF_PhaF: Multiple r 26.1 2.6E+02 0.0056 21.2 5.9 22 505-526 34-55 (55)
90 COG5660 Predicted integral mem 23.9 85 0.0018 30.8 3.4 17 458-474 30-46 (238)
91 PF04156 IncA: IncA protein; 23.9 3.1E+02 0.0068 25.8 7.5 7 505-511 44-50 (191)
92 PF10039 DUF2275: Predicted in 22.8 2.6E+02 0.0055 27.8 6.6 38 450-489 7-44 (218)
93 COG5415 Predicted integral mem 22.6 3.4E+02 0.0074 26.7 7.2 29 498-526 67-95 (251)
94 PF11286 DUF3087: Protein of u 22.1 2.8E+02 0.0061 26.3 6.4 14 505-518 55-68 (165)
95 PF09889 DUF2116: Uncharacteri 21.2 2.2E+02 0.0048 22.2 4.7 17 460-476 18-35 (59)
96 PF09788 Tmemb_55A: Transmembr 20.9 15 0.00033 36.9 -2.3 20 450-469 76-95 (256)
97 PF05055 DUF677: Protein of un 20.3 3.3E+02 0.0071 28.8 7.3 8 517-524 224-231 (336)
No 1
>PLN02518 pheophorbide a oxygenase
Probab=100.00 E-value=9.7e-96 Score=791.83 Aligned_cols=440 Identities=36% Similarity=0.691 Sum_probs=359.0
Q ss_pred ccccccccccccccCCeEEeeecCCCCCCCcEEEEECCEEEEEEEe-CCCCeEEEEecCCCCCCCCCCCCcccCCCeEEe
Q 009277 73 ELETNSQEEKFDWFSQWYPLMPVCDLDKRVPHAKKVLGLDVVVWWD-RNENEWRVFADACPHRLAPLSEGRIDQWGRLQC 151 (538)
Q Consensus 73 ~~~~~~~e~~f~~~~~W~~v~~~~dL~~g~~~~~~l~g~~lvv~r~-~~~G~~~a~~d~CpHRga~Ls~G~v~~~~~l~C 151 (538)
+.+....+++|+|+++||+|+.++||++|+++.++++|++|||||+ .+ |+++||+|+||||+++||+|++++++.|+|
T Consensus 75 ~~~~~~~~~~f~~~~~Wy~Va~~~dL~~g~p~~~~llG~~lVl~Rd~~~-G~~~A~~d~CPHRgapLS~G~v~~~g~L~C 153 (539)
T PLN02518 75 ELGQESSDSKFSWRDHWYPVSLVEDLDPSVPTPFQLLGRDLVLWKDPNQ-GEWVAFDDKCPHRLAPLSEGRIDENGHLQC 153 (539)
T ss_pred cccccccchhhhhhhhCEEEEEHHHCCCCCeEEEEECCEEEEEEEECCC-CeEEEEcccCcCcCCCcccceecCCCEEEc
Confidence 4444667889999999999999999988999999999999999998 65 899999999999999999999965679999
Q ss_pred ccCCcEEeCCCCcccCCCCCCCCCC--CCCccccccceeeEEEEcCeEEEccCCCCCcccccccCCCCCCC-CCCCCCCc
Q 009277 152 VYHGWCFSGSGDCKFIPQAPPDGPP--VHTFEKACAAVYPSTVQHDIVWFWPNIAPRYKDIIKTKKPPHIP-ELDDPSFT 228 (538)
Q Consensus 152 pYHGW~Fd~~G~c~~iP~~~~~~~~--~~~~~~~~l~~~pv~~~~G~IwV~~~~~~~~~d~~~~~~~p~~p-~l~~~~~~ 228 (538)
|||||+||++|+|+.||+.+..++. ...++++|+++|||+|++|+||||+++++.. .+....+|.++ ++++++|.
T Consensus 154 pYHGW~Fd~~G~c~~IP~~~~~~~~~~~~~~~~a~v~sypv~e~~GlIwV~~~~~~~~--~a~~~~~P~~~~~~~~~~~~ 231 (539)
T PLN02518 154 SYHGWSFDGCGSCTRIPQAAPEGPEARAVKSPRACAIKFPTMVSQGLLFVWPDENGWE--RAQATKPPMLPDEFDDPEFS 231 (539)
T ss_pred CCCCCEEcCCCCeeecccccccccccccccCcccccceEeEEEECCEEEEEeCCcccc--ccccccCCCCcccccCCCce
Confidence 9999999999999999986543221 1345678999999999999999999854211 12234667764 78888887
Q ss_pred eeeeeeEEeechHHHHHhcCCCCCCccccccccccCCCceEEeccCCeEEEEEEeccCCCCCCCCc---ccceeEEecce
Q 009277 229 KLFGNRDIPYGYEVLLENLMDPAHVPYAHYGLMRTRKPKVKLDREGGRPVEMSVNKIDINGFIGKQ---EWGSSKFLAPC 305 (538)
Q Consensus 229 ~~~~~~~~~~~w~~l~EN~lD~~H~~~~H~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~Gf~~~~---~~~~~~f~~P~ 305 (538)
.....++++++|++++||++|++|++|+|++++|. ++.+.+..++++..+..||.+.. .+....|.+||
T Consensus 232 ~~~~~~~~~~~~~~l~EN~lD~sH~pfvH~~~~G~--------~~~~~~~~~~v~~~~~~Gf~g~~~~~~~~~~~F~~P~ 303 (539)
T PLN02518 232 TVTIQRDLFYGYDTLMENVSDPSHIDFAHHKVTGR--------RDRAKPLPFKVESSGPWGFAGANSDNPRITAKFVAPC 303 (539)
T ss_pred eEEEEEEEecCchhHHHhCCccchhceeccccccC--------ccccccccceEEEcCCCcccccccCCCceEEEEECCe
Confidence 76677899999999999999999999999999864 34444445555555556776522 34567899999
Q ss_pred EEEEeeccccccccCCCcccccccccccccEEEEEEEEECCCCeEEEEEEeecCcc-------ccccccchhHHHHHhhh
Q 009277 306 IFFAYTDLMKDQENGSASSAGAEKKLEQQRAALIFICVPVSPGHSRLIWAFPRNFQ-------TWIDKVVPRWIFHIGQN 378 (538)
Q Consensus 306 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~Pv~pg~tr~~~~~~r~~~-------~~~~~~~prw~~h~~~~ 378 (538)
+++......... + ........+.++++++|+++|+||+||++.|||. .|+ +++|+|+.|..++
T Consensus 304 ~~~~~~~~~~~~---~------~~~~~~~~~~~~~~~tP~s~g~tr~f~~~~Rnf~~~~~~~~~~~-k~~PrW~~h~~~n 373 (539)
T PLN02518 304 YYINKIEIDTKL---P------IVGDQKWVIWICSFNVPMAPGKTRSIVCSARNFFQFSMPGPAWW-QLVPRWYEHWTSN 373 (539)
T ss_pred EEEEeeeeeccc---c------CCCCcceEEEEEEEEEECCCCeEEEEEEecccchhccccchhhh-hcCchHHHHhhhc
Confidence 877644321100 0 0011223456778999999999999999999983 244 7899999999999
Q ss_pred HHHhhhHHHHHHHHhhhhccCC-------cccccccccCCccchHHHHHHHHHHHHHcCCCCCCCCCC--CCCCCC-CCh
Q 009277 379 LILDSDLYLLHVEERKIMDVGP-------ANWQKACFVPTKADALVVGFRRWLKKYAGGQFNWGGKFN--ATLPPT-PPR 448 (538)
Q Consensus 379 ~Vl~eD~~ile~qq~~l~~~g~-------~~w~~~~~~p~~aD~~v~~fRrWl~~~~~g~~~w~~~~~--~~lp~~-~~~ 448 (538)
+|++||+.+||.||+.++..+. ++|++++|+|+++|++|++||||++++++|+++|+++++ .++|++ +++
T Consensus 374 ~Vl~~D~~~lh~Qe~~~~~~~~e~~~~v~~~w~k~~~~Pt~aD~~viayR~Wl~~~g~g~~~w~~~~~~~~~lp~~~~~~ 453 (539)
T PLN02518 374 KVYDGDMIVLQGQEKIFLSKSGEGSADVNAQYTKLTFTPTQADRFVLAFRNWLRRHGNSQPEWFGETSSQQPLPSTVLSK 453 (539)
T ss_pred cchHhHHHHHHHHHHHHhhccccccccchhhhhhhccCCCchhHHHHHHHHHHHHhCcCCCCcccCCcccCCCCCCCCCH
Confidence 9999999999999999877655 579999999999999999999999999999999998763 468888 599
Q ss_pred hhhHHHHHhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHHHhhhcce
Q 009277 449 EQLMDRYWSHVVNCKSCNAAHKSLSALEVTLQVVSIASIGIVATTKQNAMSMATRTTIISFAVICFAASKWLSHFIYKTF 528 (538)
Q Consensus 449 e~lldRy~~Ht~~C~sC~~Al~~~~~~~~~~~~~~~a~~g~~~~~~~~~~~~~~~~~~~~~a~l~~~~~~~~~~~~~~~f 528 (538)
|||||||||||+||+||++|||+|+++|+++++++++++|++++.... .+ .+++++++++++++.|+.++++|+|
T Consensus 454 ~~lldRy~~Ht~~C~SC~~Alk~i~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~l~~~~~~f 528 (539)
T PLN02518 454 RQMLDRFEQHTLNCSSCKGAYKAFQTLQKVLIGATVVFAATAGIPSDV----QL-RLILAGLALISAASAYALKELEKNF 528 (539)
T ss_pred HHHhHHHHhhCccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc----hH-HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999888877776555422 22 3444555666788899999999999
Q ss_pred EEeccCCCCC
Q 009277 529 HYHDYNHALR 538 (538)
Q Consensus 529 ~f~dy~ha~~ 538 (538)
||+||+||++
T Consensus 529 ~~~~~~~~~~ 538 (539)
T PLN02518 529 VFVDYVHAEI 538 (539)
T ss_pred eecCccCccC
Confidence 9999999985
No 2
>PLN02281 chlorophyllide a oxygenase
Probab=100.00 E-value=4.7e-54 Score=458.71 Aligned_cols=311 Identities=23% Similarity=0.437 Sum_probs=235.4
Q ss_pred ccccccCCeEEeeecCCCCCCCcEEEEECCEEEEEEEeCCCCeEEEEecCCCCCCCCCCCCcccCCCeEEeccCCcEEeC
Q 009277 81 EKFDWFSQWYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCVYHGWCFSG 160 (538)
Q Consensus 81 ~~f~~~~~W~~v~~~~dL~~g~~~~~~l~g~~lvv~r~~~~G~~~a~~d~CpHRga~Ls~G~v~~~~~l~CpYHGW~Fd~ 160 (538)
..+.|++.||+|+.++||++|+++.++++|++|||||+.+ |+++|++|+|||||++|++|++++ +.|+||||||+||.
T Consensus 213 ~~~~lrn~Wy~Va~s~EL~~g~~~~v~llG~~IVL~R~~d-G~v~A~~D~CPHRgaPLs~G~v~g-~~L~CPYHGW~FD~ 290 (536)
T PLN02281 213 YSPHLKNFWYPVAFTADLKHDTMVPIECFEQPWVIFRGED-GKPGCVRNTCAHRACPLDLGTVNE-GRIQCPYHGWEYST 290 (536)
T ss_pred cchhhhcccEEEEEHHHCCCCCeEEEEECCEEEEEEECCC-CeEEEEeCcCcCCCCccccceeeC-CEEEeCCCCCEECC
Confidence 4458999999999999998899999999999999999876 899999999999999999999985 79999999999999
Q ss_pred CCCcccCCCCCCCCCCCCCccccccceeeEEEEcCeEEEccCCCCCcccccccCCCCCCCCCCCC-CCceee-eeeEEee
Q 009277 161 SGDCKFIPQAPPDGPPVHTFEKACAAVYPSTVQHDIVWFWPNIAPRYKDIIKTKKPPHIPELDDP-SFTKLF-GNRDIPY 238 (538)
Q Consensus 161 ~G~c~~iP~~~~~~~~~~~~~~~~l~~~pv~~~~G~IwV~~~~~~~~~d~~~~~~~p~~p~l~~~-~~~~~~-~~~~~~~ 238 (538)
+|+|+.+|+.+ +.+.|+++|||++++|+||||+++++ ++|.+|+++++ +|.... ...++++
T Consensus 291 dG~cv~iP~~~--------~~~~~l~sYPV~e~~GlVwV~lgd~~---------~aP~~p~ld~p~~~~~~~~~~~~~~~ 353 (536)
T PLN02281 291 DGECKKMPSTK--------LLKVKIKSLPCLEQEGMIWIWPGDEP---------PAPILPSLQPPSGFLIHAELVMDLPV 353 (536)
T ss_pred CCCEeeCCCCc--------cccCCcceEeEEEECCEEEEEeCCCC---------CCCCCccccCcccceEEEEEEEEecC
Confidence 99999999753 24678999999999999999998532 22667777765 564433 3688999
Q ss_pred chHHHHHhcCCCCCCccccccccccCCCceEEeccCCeEEEEEEeccCCCCCCCCcccceeEEecceEEEEeeccccccc
Q 009277 239 GYEVLLENLMDPAHVPYAHYGLMRTRKPKVKLDREGGRPVEMSVNKIDINGFIGKQEWGSSKFLAPCIFFAYTDLMKDQE 318 (538)
Q Consensus 239 ~w~~l~EN~lD~~H~~~~H~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~~~f~~P~~~~~~~~~~~~~~ 318 (538)
||++++||++|+||++|+|+++++.... . ..............++.... .....|.+||++.....+.+.+
T Consensus 354 nwkllvENllD~~H~~fvH~~t~g~~~~-----~--p~~v~~~~~~~~~~p~~~~~-pv~~~f~aP~~v~l~i~~~~~G- 424 (536)
T PLN02281 354 EHGLLLDNLLDLAHAPFTHTSTFAKGWS-----V--PSLVKFLTPTSGLQGYWDPY-PIDMEFKPPCIVLSTIGISKPG- 424 (536)
T ss_pred CHHHHHHhccccccccccCcccccCccc-----C--CceeEEecccCCCCcccccC-CceEEEECcEEEEEeeccccCC-
Confidence 9999999999999999999999975210 0 00001111111122222111 1257899999998765443221
Q ss_pred cCCCcccccccccccccEEEEEEEEECCCCeEEEEEEeecCccccc--cccchhHHHHHhhhHHHhhhHHHHHHHHhhhh
Q 009277 319 NGSASSAGAEKKLEQQRAALIFICVPVSPGHSRLIWAFPRNFQTWI--DKVVPRWIFHIGQNLILDSDLYLLHVEERKIM 396 (538)
Q Consensus 319 ~~p~~~~~~~~~~~~~~~~~~~~~~Pv~pg~tr~~~~~~r~~~~~~--~~~~prw~~h~~~~~Vl~eD~~ile~qq~~l~ 396 (538)
... .+ .....+.....++++||+++++||+||.+.|||..++ ..+..+|+. .+.+.+|+||+.++|.||+.+.
T Consensus 425 ~~~---~~-~~~~~~~~~~~~h~~TPeT~~sTryF~~~~Rnf~~~~~d~~~~~~~l~-~~~~~vF~ED~~iLEaQQ~~i~ 499 (536)
T PLN02281 425 KLE---GK-STQQCATHLHQLHVCLPSSKNKTRLLYRMSLDFAPILKNLPFMEHLWR-HFAEQVLNEDLRLVLGQQERML 499 (536)
T ss_pred ccc---cc-cccccccceEEEEEEEECCCCeEEEEEEecccCccccccccchHHHHH-HHhhHhhHhHHHHHHHHHHHhh
Confidence 000 00 0111233566889999999999999999999997652 223344433 3567899999999999999886
Q ss_pred ccCCcccccccccCCccchHHHHHHHHHHHHHc
Q 009277 397 DVGPANWQKACFVPTKADALVVGFRRWLKKYAG 429 (538)
Q Consensus 397 ~~g~~~w~~~~~~p~~aD~~v~~fRrWl~~~~~ 429 (538)
.. ...+++++++|+++++||||++++-.
T Consensus 500 ~~-----~~~~~l~l~aD~~~v~~RRWl~~~~~ 527 (536)
T PLN02281 500 NG-----ANIWNLPVAYDKLGVRYRLWRNAVDR 527 (536)
T ss_pred cc-----cccccccchhhHHHHHHHHHHHHhhc
Confidence 63 24567899999999999999999853
No 3
>PLN00095 chlorophyllide a oxygenase; Provisional
Probab=100.00 E-value=1.2e-47 Score=393.64 Aligned_cols=285 Identities=20% Similarity=0.341 Sum_probs=211.1
Q ss_pred cccccCCeEEeeecCCC-CCCCcEEEEECCEEEEEEEeCCCCeEEEEecCCCCCCCCCCCCcccCCCeEEeccCCcEEeC
Q 009277 82 KFDWFSQWYPLMPVCDL-DKRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCVYHGWCFSG 160 (538)
Q Consensus 82 ~f~~~~~W~~v~~~~dL-~~g~~~~~~l~g~~lvv~r~~~~G~~~a~~d~CpHRga~Ls~G~v~~~~~l~CpYHGW~Fd~ 160 (538)
...-+++||+|++++|| ++|+++.++++|++|||||+.+ |+++||+|+||||+++|++|+++ ++.|+||||||+||.
T Consensus 66 ~~~~r~~WypVa~ssdL~~~g~~~~f~L~GepIVL~Rd~d-Gqv~Af~N~CPHRGapLSeG~v~-~g~L~CPYHGW~FD~ 143 (394)
T PLN00095 66 TADARAHWFPVAFAAGLRDEDALIAFDLFNVPWVLFRDAD-GEAGCIKDECAHRACPLSLGKLV-DGKAQCPYHGWEYET 143 (394)
T ss_pred CCchhcCeEEEEEHHHCCCCCceEEEEECCEEEEEEECCC-CCEEEEeccCCCCCCccccCccc-CCEEEecCCCcEECC
Confidence 34457999999999999 6899999999999999999976 89999999999999999999997 489999999999999
Q ss_pred CCCcccCCCCCCCCCCCCCccccccceeeEEEEcCeEEEccCCCCCccc--------------ccccCCCCCCCCCCCCC
Q 009277 161 SGDCKFIPQAPPDGPPVHTFEKACAAVYPSTVQHDIVWFWPNIAPRYKD--------------IIKTKKPPHIPELDDPS 226 (538)
Q Consensus 161 ~G~c~~iP~~~~~~~~~~~~~~~~l~~~pv~~~~G~IwV~~~~~~~~~d--------------~~~~~~~p~~p~l~~~~ 226 (538)
+|+|+.+|+.... .++.|+++|||++++|+||||+++.. +.| .++...|+.+++. ++
T Consensus 144 ~G~C~~iP~~~~~------~~~~~v~tYPV~e~dGlVwVw~G~~~-p~dflg~~~~~e~~~~~~~~~~~P~~~~~~--~g 214 (394)
T PLN00095 144 GGECAKMPSCKKF------LKGVFADAAPVIERDGFIFLWAGESD-PADFVGPEAACESIDDDVLAANEPGMFAPG--EG 214 (394)
T ss_pred CCCEeeCCCcccc------ccccccceEEEEEECCEEEEEeCCcc-hhhhccccccccccccchhhccCCcccCCC--CC
Confidence 9999999985432 24568999999999999999998532 221 1112344456655 36
Q ss_pred Cceeee-eeEEeechHHHHHhcCCCCC-CccccccccccCCCceEEeccCCeEEEEEEeccCCCCCCCCc--ccceeEEe
Q 009277 227 FTKLFG-NRDIPYGYEVLLENLMDPAH-VPYAHYGLMRTRKPKVKLDREGGRPVEMSVNKIDINGFIGKQ--EWGSSKFL 302 (538)
Q Consensus 227 ~~~~~~-~~~~~~~w~~l~EN~lD~~H-~~~~H~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~Gf~~~~--~~~~~~f~ 302 (538)
|..+.. .+|+||+|.++|||+||++| .||+|+.++.- ...+|..+.++.+.+.+....++.+.+ .....+|.
T Consensus 215 f~~~aev~~Dlp~d~~~L~ENllD~aH~a~~~~t~tf~~----~~~~r~~~~~~~~~~~~~~~~~l~g~~~~~p~~~~F~ 290 (394)
T PLN00095 215 FTPMAEVIADIKLDADEVLERLLAIGERARREATVSFDV----SDAKRGRDALFPVDGTKIIAKVLRGGRDAVPQSATFK 290 (394)
T ss_pred ceEEEEEEEeccccHHHHHHhhcCccccCCccCceeeec----ccccccccCccchhhhhhhhhhheeecccCCcceeEc
Confidence 766544 58999999999999999999 58888776621 113444445555444444445555433 34567899
Q ss_pred cceEEEEeeccccccccCCCcccccccccccccEEEEEEEEECCCCeEEEEEEeecCccc--cccccchhHHHHHhhhHH
Q 009277 303 APCIFFAYTDLMKDQENGSASSAGAEKKLEQQRAALIFICVPVSPGHSRLIWAFPRNFQT--WIDKVVPRWIFHIGQNLI 380 (538)
Q Consensus 303 ~P~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~Pv~pg~tr~~~~~~r~~~~--~~~~~~prw~~h~~~~~V 380 (538)
+||++..+..+....| +..+...++.++++|+|.+||+||+++++++||.. ++.+.++.-+...+.++|
T Consensus 291 ppc~~~s~i~l~~~~g---------~~~~~~~~l~qlhvclP~~~G~tRll~R~~~dF~~~~~~~~~~~~~~w~~~a~~v 361 (394)
T PLN00095 291 PACVIASTIALEDGPG---------GGDGTDMNVEQLHVCLPAKPGLCRLLFRLAFDFVAVPEGAQAAAGDVWANLAMMV 361 (394)
T ss_pred CceeeeeeecccccCC---------CCccccceeeeEEEEEecCCCceEEEEeecccccccHHHhHhchHHHHHHHHHHH
Confidence 9999987654421110 00112346788999999999999999999999965 222334432333457899
Q ss_pred HhhhHHHHHH
Q 009277 381 LDSDLYLLHV 390 (538)
Q Consensus 381 l~eD~~ile~ 390 (538)
|.||+.++.+
T Consensus 362 l~e~l~~v~~ 371 (394)
T PLN00095 362 LKEELEDVRA 371 (394)
T ss_pred HHHHHHHHhc
Confidence 9999987643
No 4
>COG4638 HcaE Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit [Inorganic ion transport and metabolism / General function prediction only]
Probab=100.00 E-value=9.4e-43 Score=367.20 Aligned_cols=325 Identities=25% Similarity=0.391 Sum_probs=224.2
Q ss_pred ccccccccccccccCCeEEeeecCCCCCCCcEEEEECCEEEEEEEeCCCCeEEEEecCCCCCCCCCCCCcccCCCeEEec
Q 009277 73 ELETNSQEEKFDWFSQWYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCV 152 (538)
Q Consensus 73 ~~~~~~~e~~f~~~~~W~~v~~~~dL~~g~~~~~~l~g~~lvv~r~~~~G~~~a~~d~CpHRga~Ls~G~v~~~~~l~Cp 152 (538)
.++....|.+.+|.++||+||+++||+++++++++++|++|||||+++ |+|+||.|.|||||++||+|++++.+.|+||
T Consensus 12 ~~~~~~~~~~~~~~~~Wy~v~~~~el~~~~~~~~~i~g~~lvi~R~~d-g~~~al~d~C~HRga~Ls~g~~~~~~~l~Cp 90 (367)
T COG4638 12 DPELFQLELERIFYKHWYVVAHSSELPKPDPLTVRIGGEPLVVVRDKD-GQVHALADVCPHRGARLSEGRVGGKGRLTCP 90 (367)
T ss_pred CHHHHHHHHHHhhhhCEEEEccHHHCCCCCceeEEEcCeEEEEEECCC-CCEEEEeccCCCCCchhccccCCCCceEecC
Confidence 455567788889999999999999999889999999999999999998 8999999999999999999999865799999
Q ss_pred cCCcEEeCCCCcccCCCCCCCCCCCCCccccccceeeEEEEcCeEEEccCCCCCcccccccCCCCCCC-CCCCCCCceee
Q 009277 153 YHGWCFSGSGDCKFIPQAPPDGPPVHTFEKACAAVYPSTVQHDIVWFWPNIAPRYKDIIKTKKPPHIP-ELDDPSFTKLF 231 (538)
Q Consensus 153 YHGW~Fd~~G~c~~iP~~~~~~~~~~~~~~~~l~~~pv~~~~G~IwV~~~~~~~~~d~~~~~~~p~~p-~l~~~~~~~~~ 231 (538)
||||+||.+|+|+.+|+.... ..+.+++.+++.|||++++|+||||++++++. .+...+|..+ +.++.......
T Consensus 91 yHgW~y~~~G~~~~ip~~~~~--~~~~~~~~~l~~~~~~~~~G~Iwi~~~~~~~~---~~~~~~p~~~~~~~~~~~~~~~ 165 (367)
T COG4638 91 YHGWTYDLDGRLRGVPARGYP--LDFDKSEHGLKRYPVEERYGFIWIWLGDPPPA---AEAFLPPAEPYEDDRSRLGGGS 165 (367)
T ss_pred CCceEECCCCcEecCCccccC--CCCCHhhCCccccceEEEccEEEEecCCCccC---hhHhcccccccccccccccCce
Confidence 999999999999999954211 11334557899999999999999999976543 2234556666 44332222234
Q ss_pred eeeEEeechHHHHHhcCC-CCCCccccccccccCCC----ceEEeccCCeEEEEEEecc---------CCCCCCCCc---
Q 009277 232 GNRDIPYGYEVLLENLMD-PAHVPYAHYGLMRTRKP----KVKLDREGGRPVEMSVNKI---------DINGFIGKQ--- 294 (538)
Q Consensus 232 ~~~~~~~~w~~l~EN~lD-~~H~~~~H~~~~~~~~p----~~~~~~~~~~~~~~~~~~~---------~~~Gf~~~~--- 294 (538)
...++++|||.++||++| +||++++|+++++.... .......+.....+..... ...++.+..
T Consensus 166 ~~~~~~~nwk~~vEn~~d~~~H~~~vH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~p~~~~~~~~~~~~~~~~~ 245 (367)
T COG4638 166 FTINVPGNWKLAVENNLDDPYHVPFVHPGLLGTEPHTEVGAYDVTAGGHWDVILATGNPFFQPLGSEASSYGFDGNYEVH 245 (367)
T ss_pred EEEEecccceEEeeccCCccccccccCHHHhcccccccccccccccCCceeeeeccCCCccCCcchhhhccccccccccc
Confidence 567889999999998888 99999999999875321 0111111111111111110 011122211
Q ss_pred -ccceeEEecceE-EEEeeccccccccCCCcccccccccccccEEEEEEEEECCCCeEEEEEEe--ecCccccccccchh
Q 009277 295 -EWGSSKFLAPCI-FFAYTDLMKDQENGSASSAGAEKKLEQQRAALIFICVPVSPGHSRLIWAF--PRNFQTWIDKVVPR 370 (538)
Q Consensus 295 -~~~~~~f~~P~~-~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~Pv~pg~tr~~~~~--~r~~~~~~~~~~pr 370 (538)
......|+.|+. ..+. .......++..+|+++++|.+.... ..+.....+ ....
T Consensus 246 ~~~~~~~~~~p~~~~~~~---------------------~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 303 (367)
T COG4638 246 VPGAYLLFLYPNSTVWNH---------------------VTVDDVIVFFVQPIDEDETMVTLVWLVLPDLVEGVD-YFDK 303 (367)
T ss_pred cCceeEEEEcCCchheee---------------------ecccceeEEEEEecCCceeEEEeeeeeccchhhHHH-HHHH
Confidence 123344555542 2211 2234567888899999999997642 222111111 1122
Q ss_pred HHHHHhhhHHHhhhHHHHHHHHhhhhccCCcccccccccCCccchHHHHHHHHHHHHHcC
Q 009277 371 WIFHIGQNLILDSDLYLLHVEERKIMDVGPANWQKACFVPTKADALVVGFRRWLKKYAGG 430 (538)
Q Consensus 371 w~~h~~~~~Vl~eD~~ile~qq~~l~~~g~~~w~~~~~~p~~aD~~v~~fRrWl~~~~~g 430 (538)
++. .+.+.+++||..|+|.||+++.+... ..+ ..+...|...+++++|+.+....
T Consensus 304 ~~~-~~~~~~~~qD~~i~e~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~ 358 (367)
T COG4638 304 LIR-RFRQEILDQDREILENQQPGRLSPAL---ERG-PYPIREDAGSVQFRRWLAERLVL 358 (367)
T ss_pred HHH-HHhccCcHHHHHHHHHHhcccccccc---cCC-CccccccchhhHHHHHHHHHHhh
Confidence 222 23456999999999999997665542 112 34667899999999999887754
No 5
>TIGR03229 benzo_1_2_benA benzoate 1,2-dioxygenase, large subunit. Benzoate 1,2-dioxygenase (EC 1.14.12.10) belongs to the larger family of aromatic ring-hydroxylating dioxygenases. Members of this family all act on benzoate, but may have additional activities on various benozate analogs. This model describes the large subunit. Between the trusted and noise cutoffs are similar enzymes, likely to act on benzoate but perhaps best identified according to some other activity, such as 2-chlorobenzoate 1,2-dioxygenase (1.14.12.13).
Probab=100.00 E-value=2.1e-34 Score=307.11 Aligned_cols=186 Identities=16% Similarity=0.154 Sum_probs=145.5
Q ss_pred ccccccccccccccCCeEEeeecCCCC-CCCcEEEEECCEEEEEEEeCCCCeEEEEecCCCCCCCCCCCCcccCCCeEEe
Q 009277 73 ELETNSQEEKFDWFSQWYPLMPVCDLD-KRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQC 151 (538)
Q Consensus 73 ~~~~~~~e~~f~~~~~W~~v~~~~dL~-~g~~~~~~l~g~~lvv~r~~~~G~~~a~~d~CpHRga~Ls~G~v~~~~~l~C 151 (538)
.++.++.|.+.+|.+.|+.||+++||+ +|++++++++|++|+|+|+++ |+++||.|+|||||++|+.|..++.+.|+|
T Consensus 23 d~~~f~~E~~~IF~~~W~~v~~~selp~~gd~~t~~~~~~~vvv~R~~d-G~i~af~N~C~HRga~L~~~~~g~~~~~~C 101 (433)
T TIGR03229 23 DPELFDLEMKHIFEGNWIYLAHESQIPNNNDYYTTYMGRQPIFIARNKD-GELNAFINACSHRGAMLCRHKRGNKTTYTC 101 (433)
T ss_pred CHHHHHHHHHHHhhhCCEEEEEHHHCCCCCCeEEEEECCeEEEEEECCC-CcEEEEeCcCCCCCCCcccccccCCCEEEc
Confidence 567788999999999999999999999 688899999999999999987 899999999999999999987665568999
Q ss_pred ccCCcEEeCCCCcccCCCCCCC-CCCCCCc-cccccceee-EEEEcCeEEEccCCCCCcccccccCCCCC---CCCCC--
Q 009277 152 VYHGWCFSGSGDCKFIPQAPPD-GPPVHTF-EKACAAVYP-STVQHDIVWFWPNIAPRYKDIIKTKKPPH---IPELD-- 223 (538)
Q Consensus 152 pYHGW~Fd~~G~c~~iP~~~~~-~~~~~~~-~~~~l~~~p-v~~~~G~IwV~~~~~~~~~d~~~~~~~p~---~p~l~-- 223 (538)
|||||+||.||+|+.+|..... .+..++. ...+|..++ ++..+|+|||+++++++.. .+...+. ++.+.
T Consensus 102 PyHgW~f~~~G~l~~vP~~~~~~~~~~fd~~~~~~L~~v~rve~y~GfIFv~l~~~~~~l---~e~Lg~~~~~ld~~~~~ 178 (433)
T TIGR03229 102 PFHGWTFNNSGKLLKVKDPEDAGYPECFNKDGSHDLKKVARFESYRGFLFGSLNPDVLPL---EEHLGETAKIIDMIVDQ 178 (433)
T ss_pred CCCCCEecCCcceEeCCCcccccCccccCcHhhcCCccceEEEEECCEEEEEcCCCCCCH---HHHhhhHHHHHHHHhhc
Confidence 9999999999999999974322 1222333 356799996 6677999999998764322 2222222 11111
Q ss_pred -CCCCcee--eeeeEEeechHHHHHhcCCCCCCccccccccc
Q 009277 224 -DPSFTKL--FGNRDIPYGYEVLLENLMDPAHVPYAHYGLMR 262 (538)
Q Consensus 224 -~~~~~~~--~~~~~~~~~w~~l~EN~lD~~H~~~~H~~~~~ 262 (538)
..++... ...+++++|||+++||++|+||++++|..++.
T Consensus 179 ~~~~~~~~~~~~~~~~~~NWKl~~EN~~D~YH~~~vH~~~~~ 220 (433)
T TIGR03229 179 SPDGLEVLRGSSTYTYEGNWKLQAENGADGYHVSAVHWNYAA 220 (433)
T ss_pred CcCCCeEEeeeEEEEecCchhhhHHhccCcccchhhcccHHH
Confidence 1223222 23577899999999999999999999988764
No 6
>TIGR03228 anthran_1_2_A anthranilate 1,2-dioxygenase, large subunit. Anthranilate (2-aminobenzoate) is an intermediate of tryptophan (Trp) biosynthesis and degradation. Members of this family are the large subunit of anthranilate 1,2-dioxygenase, which acts in Trp degradation by converting anthranilate to catechol. Closely related paralogs typically are the benzoate 1,2-dioxygenase large subunit, among the larger set of ring-hydroxylating dioxygenases.
Probab=100.00 E-value=1.8e-34 Score=307.50 Aligned_cols=186 Identities=17% Similarity=0.221 Sum_probs=146.8
Q ss_pred ccccccccccccccCCeEEeeecCCCC-CCCcEEEEECCEEEEEEEeCCCCeEEEEecCCCCCCCCCCC-CcccCCCeEE
Q 009277 73 ELETNSQEEKFDWFSQWYPLMPVCDLD-KRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSE-GRIDQWGRLQ 150 (538)
Q Consensus 73 ~~~~~~~e~~f~~~~~W~~v~~~~dL~-~g~~~~~~l~g~~lvv~r~~~~G~~~a~~d~CpHRga~Ls~-G~v~~~~~l~ 150 (538)
.++-++.|.+.+|.+.|+.||+.+||+ +|+++++++++++|||+|+++ |+++||.|+|||||++|+. +..+ .+.|+
T Consensus 23 d~~if~~E~~~IF~~~W~~v~h~selp~~GDy~t~~ig~~pviv~R~~d-G~i~a~~N~C~HRGa~L~~~~~Gn-~~~~~ 100 (438)
T TIGR03228 23 EPELFDLEMELIFEKNWIYACHESELPNNHDFVTVRAGRQPMIVTRDGK-GELHALVNACQHRGATLTRVGKGN-QSTFT 100 (438)
T ss_pred CHHHHHHHHHHHHhhCCEEEEEHHHCCCCCCeEEEEECCeEEEEEECCC-CCEEEEcccCCCCCCccccCCccc-cCEEE
Confidence 567788999999999999999999998 599999999999999999987 8999999999999999997 5544 46899
Q ss_pred eccCCcEEeCCCCcccCCCCCCCCCCCCCccccccceeeEEEEcCeEEEccCCCC--CcccccccCCCCCCCCCC----C
Q 009277 151 CVYHGWCFSGSGDCKFIPQAPPDGPPVHTFEKACAAVYPSTVQHDIVWFWPNIAP--RYKDIIKTKKPPHIPELD----D 224 (538)
Q Consensus 151 CpYHGW~Fd~~G~c~~iP~~~~~~~~~~~~~~~~l~~~pv~~~~G~IwV~~~~~~--~~~d~~~~~~~p~~p~l~----~ 224 (538)
||||||+||.||+|+.||.... .++.++.....|+.++|.+.+|+||+++++++ +..+.++... ..++.+. .
T Consensus 101 CPYHgW~y~~dG~L~~vp~~~~-y~~~fd~~~~~L~~~rv~~y~GfIFv~l~~~a~~~l~e~lg~~~-~~ld~~~~~~~~ 178 (438)
T TIGR03228 101 CPFHAWCYKSDGRLVKVKAPGE-YCEGFDKATRGLKKARIASYRGFVFVSLDVAATDSLEDFLGDAR-VFLDMMVAQSPT 178 (438)
T ss_pred cCCCCCcccCCCceeecCcccc-cCCCCChhhCCCcceeEEEECCEEEEEeCCCCCCCHHHHhhhHH-HHHHHHhhccCc
Confidence 9999999999999999996432 22235566778889999999999999998763 2222222110 1222221 1
Q ss_pred CCCcee--eeeeEEeechHHHHHhcCCCCCCccccccccc
Q 009277 225 PSFTKL--FGNRDIPYGYEVLLENLMDPAHVPYAHYGLMR 262 (538)
Q Consensus 225 ~~~~~~--~~~~~~~~~w~~l~EN~lD~~H~~~~H~~~~~ 262 (538)
.++... ....++++|||+.+||++|+||++++|..++.
T Consensus 179 g~le~~~~~~~~~~~~NWKl~~EN~~D~YH~~~vH~~~~~ 218 (438)
T TIGR03228 179 GELEVLPGKSAYTYAGNWKLQNENGLDGYHVSTVHYNYVA 218 (438)
T ss_pred CceEEecceEEEEeCCchHHHHHhccccccchhhChhhHh
Confidence 123222 23468899999999999999999999988764
No 7
>cd03480 Rieske_RO_Alpha_PaO Rieske non-heme iron oxygenase (RO) family, Pheophorbide a oxygenase (PaO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of a small subfamily of enzymes found in plants as well as oxygenic cyanobacterial photosynthesizers including LLS1 (lethal leaf spot 1, also known as PaO) and ACD1 (accelerated cell death 1). ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. PaO expression increases upon physical wounding of plant leaves and is thought to catalyze a key step in chlorophyll degradation. The
Probab=99.97 E-value=2.8e-31 Score=242.52 Aligned_cols=130 Identities=51% Similarity=1.069 Sum_probs=115.0
Q ss_pred ccccccccccccccCCeEEeeecCCCCCCCcEEEEECCEEEEEEEeC-CCCeEEEEecCCCCCCCCCCCCcccCCCeEEe
Q 009277 73 ELETNSQEEKFDWFSQWYPLMPVCDLDKRVPHAKKVLGLDVVVWWDR-NENEWRVFADACPHRLAPLSEGRIDQWGRLQC 151 (538)
Q Consensus 73 ~~~~~~~e~~f~~~~~W~~v~~~~dL~~g~~~~~~l~g~~lvv~r~~-~~G~~~a~~d~CpHRga~Ls~G~v~~~~~l~C 151 (538)
|++..++..++.|++.|++|+.++||++|+++.++++|++|+|+|++ + |+++||+|+|||||++|+.|.+.+++.|+|
T Consensus 2 ~~~~~~~~~~~~~~~~W~~v~~~~el~~g~~~~~~~~g~~i~v~r~~~d-G~~~A~~n~CpHrga~L~~G~~~~~~~i~C 80 (138)
T cd03480 2 EPAGGSDSDKFDWREVWYPVAYVEDLDPSRPTPFTLLGRDLVIWWDRNS-QQWRAFDDQCPHRLAPLSEGRIDEEGCLEC 80 (138)
T ss_pred CCCCCcccccCCCccceEEEEEHHHCCCCCcEEEEECCeeEEEEEECCC-CEEEEEcCCCcCCcCccccceEcCCCEEEe
Confidence 56667778899999999999999999999999999999999999986 5 899999999999999999998865579999
Q ss_pred ccCCcEEeCCCCcccCCCCCCCCCCCCCccccccceeeEEEEcCeEEEccCCC
Q 009277 152 VYHGWCFSGSGDCKFIPQAPPDGPPVHTFEKACAAVYPSTVQHDIVWFWPNIA 204 (538)
Q Consensus 152 pYHGW~Fd~~G~c~~iP~~~~~~~~~~~~~~~~l~~~pv~~~~G~IwV~~~~~ 204 (538)
|||||+||.+|+|+.+|.....+. ...+.+.+|++|||++++|+|||++++.
T Consensus 81 P~Hgw~Fd~tG~~~~~P~~~~~g~-~~~~~~~~l~~ypv~v~~g~V~V~~~~~ 132 (138)
T cd03480 81 PYHGWSFDGSGSCQRIPQAAEGGK-AHTSPRACVASLPTAVRQGLLFVWPGEP 132 (138)
T ss_pred CCCCCEECCCCCEEECCCCccccc-cCCCcccccceEeEEEECCEEEEecCCh
Confidence 999999999999999998654331 2334567899999999999999999854
No 8
>cd04338 Rieske_RO_Alpha_Tic55 Tic55 is a 55kDa LLS1-related non-heme iron oxygenase associated with protein transport through the plant inner chloroplast membrane. This domain represents the N-terminal Rieske domain of the Tic55 oxygenase alpha subunit. Tic55 is closely related to the oxygenase alpha subunits of a small subfamily of enzymes found in plants as well as oxygenic cyanobacterial photosynthesizers including LLS1 (lethal leaf spot 1, also known as PaO), Ptc52, and ACD1 (accelerated cell death 1). ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis.
Probab=99.97 E-value=3e-31 Score=241.13 Aligned_cols=127 Identities=39% Similarity=0.843 Sum_probs=110.6
Q ss_pred ccccccccccccccCCeEEeeecCCCCCCCcEEEEECCEEEEEEEeCCCCeEEEEecCCCCCCCCCCCCcccCCCeEEec
Q 009277 73 ELETNSQEEKFDWFSQWYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCV 152 (538)
Q Consensus 73 ~~~~~~~e~~f~~~~~W~~v~~~~dL~~g~~~~~~l~g~~lvv~r~~~~G~~~a~~d~CpHRga~Ls~G~v~~~~~l~Cp 152 (538)
|++....-.+++|++.|++|+.++||+++..+.++++|++|+|+|+.+ |+++||+|+|||||++|++|.+.+ +.|+||
T Consensus 2 ~~~~~~~~~~~~~~~~W~~v~~~~el~~~~~~~~~v~g~~ivl~r~~~-G~v~A~~n~CpHrga~L~~G~~~~-~~i~CP 79 (134)
T cd04338 2 EFETPENVAEYDWREEWYPLYLLKDVPTDAPLGLSVYDEPFVLFRDQN-GQLRCLEDRCPHRLAKLSEGQLID-GKLECL 79 (134)
T ss_pred CcccCCcccccccccCcEEEEEHHHCCCCCCEEEEECCceEEEEEcCC-CCEEEEcCcCCCCcCcccCCeecC-CEEEcc
Confidence 344445556899999999999999999888999999999999999876 899999999999999999999874 799999
Q ss_pred cCCcEEeCCCCcccCCCCCCCCCCCCCccccccceeeEEEEcCeEEEccCCC
Q 009277 153 YHGWCFSGSGDCKFIPQAPPDGPPVHTFEKACAAVYPSTVQHDIVWFWPNIA 204 (538)
Q Consensus 153 YHGW~Fd~~G~c~~iP~~~~~~~~~~~~~~~~l~~~pv~~~~G~IwV~~~~~ 204 (538)
||||+||.+|+|+.+|+.+... ..+.+.+|++|||++++|+||||+++.
T Consensus 80 ~Hgw~Fd~~G~~~~~P~~~~~~---~~~~~~~l~~y~v~~~~G~V~V~~~~~ 128 (134)
T cd04338 80 YHGWQFGGEGKCVKIPQLPADA---KIPKNACVKSYEVRDSQGVVWMWMSEA 128 (134)
T ss_pred CCCCEECCCCCEEECCCCCccC---CCCcccCcceEeEEEECCEEEEEcCCC
Confidence 9999999999999999865321 123456799999999999999999864
No 9
>cd03537 Rieske_RO_Alpha_PrnD This alignment model represents the N-terminal rieske domain of the oxygenase alpha subunit of aminopyrrolnitrin oxygenase (PrnD). PrnD is a novel Rieske N-oxygenase that catalyzes the final step in the pyrrolnitrin biosynthetic pathway, the oxidation of the amino group in aminopyrrolnitrin to a nitro group, forming the antibiotic pyrrolnitrin. The biosynthesis of pyrrolnitrin is one of the best examples of enzyme-catalyzed arylamine oxidation. Although arylamine oxygenases are widely distributed within the microbial world and used in a variety of metabolic reactions, PrnD represents one of only two known examples of arylamine oxygenases or N-oxygenases involved in arylnitro group formation, the other being AurF involved in aureothin biosynthesis.
Probab=99.97 E-value=2.8e-30 Score=230.84 Aligned_cols=114 Identities=25% Similarity=0.517 Sum_probs=100.2
Q ss_pred CCeEEeeecCCCCCCCcEEEEECCEEEEEEEeCCCCeEEEEecCCCCCCCCCCCCcccCCCeEEeccCCcEEeCCCCccc
Q 009277 87 SQWYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCVYHGWCFSGSGDCKF 166 (538)
Q Consensus 87 ~~W~~v~~~~dL~~g~~~~~~l~g~~lvv~r~~~~G~~~a~~d~CpHRga~Ls~G~v~~~~~l~CpYHGW~Fd~~G~c~~ 166 (538)
+.||+|+.++||+ ++++.++++|++|||||+.+ |+++|++|+||||+++|++|++++ +.|+||||||+||.+|+|+.
T Consensus 2 ~~W~~v~~~~~l~-~~~~~~~~~g~~ivl~r~~~-g~v~a~~n~CpHrg~~Ls~G~v~~-~~l~CpyHGw~Fd~~G~~~~ 78 (123)
T cd03537 2 ASWYVAMRSDDLK-DKPTELTLFGRPCVAWRGAT-GRAVVMDRHCSHLGANLADGRVKD-GCIQCPFHHWRYDEQGQCVH 78 (123)
T ss_pred CcEEEEEEHHHcC-CCcEEEEECCeEEEEEEccC-CEEEEEcCCCCCCCCCccCCEEeC-CEEECCCCCCEECCCCCEEE
Confidence 5799999999995 78999999999999999866 899999999999999999999984 78999999999999999999
Q ss_pred CCCCCCCCCC-CCCccccccceeeEEEEcCeEEEccCC
Q 009277 167 IPQAPPDGPP-VHTFEKACAAVYPSTVQHDIVWFWPNI 203 (538)
Q Consensus 167 iP~~~~~~~~-~~~~~~~~l~~~pv~~~~G~IwV~~~~ 203 (538)
||+.+...+. ...+++.++++|||+|++|+||||+++
T Consensus 79 iP~~~~~~~~~~~~p~~~~~~~~pv~e~~G~Vwv~~g~ 116 (123)
T cd03537 79 IPGHSTAVRRLEPVPRGARQPTLVTAERYGYVWVWYGS 116 (123)
T ss_pred CCCCcccccccccCCcccccccEeEEEECCEEEEEcCC
Confidence 9986542111 113456789999999999999999985
No 10
>cd04337 Rieske_RO_Alpha_Cao Cao (chlorophyll a oxygenase) is a rieske non-heme iron-sulfur protein located within the plastid-envelope inner and thylakoid membranes, that catalyzes the conversion of chlorophyllide a to chlorophyllide b. CAO is found not only in plants but also in chlorophytes and prochlorophytes. This domain represents the N-terminal rieske domain of the oxygenase alpha subunit. ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. Cao is closely related to several other plant RO's including Tic 55, a 55 kDa protein associated with protein transport through the inner
Probab=99.96 E-value=7.4e-29 Score=223.97 Aligned_cols=117 Identities=31% Similarity=0.613 Sum_probs=105.4
Q ss_pred cccccccccCCeEEeeecCCCCCCCcEEEEECCEEEEEEEeCCCCeEEEEecCCCCCCCCCCCCcccCCCeEEeccCCcE
Q 009277 78 SQEEKFDWFSQWYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCVYHGWC 157 (538)
Q Consensus 78 ~~e~~f~~~~~W~~v~~~~dL~~g~~~~~~l~g~~lvv~r~~~~G~~~a~~d~CpHRga~Ls~G~v~~~~~l~CpYHGW~ 157 (538)
..+.+..|++.||+|+.++||++|+++.++++|++++|+|+.+ |+++|++|+|||||++|++|.+. ++.|+||||||+
T Consensus 7 ~~~~~~~~~~~W~~v~~~~el~~g~~~~~~v~g~~l~l~r~~~-g~v~A~~n~CpH~g~~L~~G~~~-~~~i~CP~Hgw~ 84 (129)
T cd04337 7 SLELEPGLRNFWYPVEFSKDLKMDTMVPFELFGQPWVLFRDED-GTPGCIRDECAHRACPLSLGKVI-EGRIQCPYHGWE 84 (129)
T ss_pred CccccchhhCccEEEEEHHHCCCCCeEEEEECCcEEEEEECCC-CcEEEEeCcCCCCcCCcccCcEe-CCEEEeCCCCCE
Confidence 3456778999999999999999999999999999999999876 89999999999999999999987 479999999999
Q ss_pred EeCCCCcccCCCCCCCCCCCCCccccccceeeEEEEcCeEEEccCCC
Q 009277 158 FSGSGDCKFIPQAPPDGPPVHTFEKACAAVYPSTVQHDIVWFWPNIA 204 (538)
Q Consensus 158 Fd~~G~c~~iP~~~~~~~~~~~~~~~~l~~~pv~~~~G~IwV~~~~~ 204 (538)
||.+|+|+.+|..+ +...++++||+++++|+||||++++
T Consensus 85 Fd~tG~~~~~P~~~--------~~~~~l~~y~v~v~~g~V~V~~~~~ 123 (129)
T cd04337 85 YDGDGECTKMPSTK--------CLNVGIAALPCMEQDGMIWVWPGDD 123 (129)
T ss_pred ECCCCCEEeCCcCC--------CccCCcceEeEEEECCEEEEEcCCC
Confidence 99999999998643 2345799999999999999999854
No 11
>cd03479 Rieske_RO_Alpha_PhDO_like Rieske non-heme iron oxygenase (RO) family, Phthalate 4,5-dioxygenase (PhDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of PhDO and similar proteins including 3-chlorobenzoate 3,4-dioxygenase (CBDO), phenoxybenzoate dioxygenase (POB-dioxygenase) and 3-nitrobenzoate oxygenase (MnbA). ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. PhDO and CBDO are two-component RO systems, containing oxygenase and reductase components. PhDO catalyzes the dihydroxylation of phthalate to form th
Probab=99.95 E-value=2.5e-28 Score=224.71 Aligned_cols=119 Identities=29% Similarity=0.587 Sum_probs=106.0
Q ss_pred cccccccCCeEEeeecCCCC-CCCcEEEEECCEEEEEEEeCCCCeEEEEecCCCCCCCCCCCCcccCCCeEEeccCCcEE
Q 009277 80 EEKFDWFSQWYPLMPVCDLD-KRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCVYHGWCF 158 (538)
Q Consensus 80 e~~f~~~~~W~~v~~~~dL~-~g~~~~~~l~g~~lvv~r~~~~G~~~a~~d~CpHRga~Ls~G~v~~~~~l~CpYHGW~F 158 (538)
.+..+|++.|++|+.++||+ +|+++.++++|++|+|+|+.+ |+++||+|+|||||++|+.|.+.+ +.|+||||||+|
T Consensus 13 ~~~~~~~~~W~~v~~~~eL~~~g~~~~~~~~g~~i~v~r~~~-G~v~A~~n~CpHrG~~L~~G~~~~-~~i~CP~Hgw~F 90 (144)
T cd03479 13 PMGELLRRYWQPVALSSELTEDGQPVRVRLLGEDLVAFRDTS-GRVGLLDEHCPHRGASLVFGRVEE-CGLRCCYHGWKF 90 (144)
T ss_pred chhhHhhCceEEEEEHHHCCCCCCEEEEEECCcEEEEEEeCC-CCEEEEcCcCCCCCCcccCCcccC-CEEEccCCCcEE
Confidence 45678999999999999999 699999999999999999876 899999999999999999999874 799999999999
Q ss_pred eCCCCcccCCCCCCCCCCCCCccccccceeeEEEEcCeEEEccCC
Q 009277 159 SGSGDCKFIPQAPPDGPPVHTFEKACAAVYPSTVQHDIVWFWPNI 203 (538)
Q Consensus 159 d~~G~c~~iP~~~~~~~~~~~~~~~~l~~~pv~~~~G~IwV~~~~ 203 (538)
|.+|+|+.+|+.+.... ...+.+|++|+|++++|+|||++++
T Consensus 91 ~~~G~~~~~P~~~~~~~---~~~~~~l~~~~v~~~~G~I~V~~~~ 132 (144)
T cd03479 91 DVDGQCLEMPSEPPDSQ---LKQKVRQPAYPVRERGGLVWAYMGP 132 (144)
T ss_pred CCCCCEEECCCCccccC---CccccCcceEeEEEECCEEEEECCC
Confidence 99999999997654211 2356789999999999999999974
No 12
>cd03531 Rieske_RO_Alpha_KSH The alignment model represents the N-terminal rieske iron-sulfur domain of KshA, the oxygenase component of 3-ketosteroid 9-alpha-hydroxylase (KSH). The terminal oxygenase component of KSH is a key enzyme in the microbial steroid degradation pathway, catalyzing the 9 alpha-hydroxylation of 4-androstene-3,17-dione (AD) and 1,4-androstadiene-3,17-dione (ADD). KSH is a two-component class IA monooxygenase, with terminal oxygenase (KshA) and oxygenase reductase (KshB) components. KSH activity has been found in many actino- and proteo- bacterial genera including Rhodococcus, Nocardia, Arthrobacter, Mycobacterium, and Burkholderia.
Probab=99.95 E-value=2.8e-28 Score=216.05 Aligned_cols=110 Identities=25% Similarity=0.515 Sum_probs=99.8
Q ss_pred CeEEeeecCCCCCCCcEEEEECCEEEEEEEeCCCCeEEEEecCCCCCCCCCCCCcccCCCeEEeccCCcEEeCCCCcccC
Q 009277 88 QWYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCVYHGWCFSGSGDCKFI 167 (538)
Q Consensus 88 ~W~~v~~~~dL~~g~~~~~~l~g~~lvv~r~~~~G~~~a~~d~CpHRga~Ls~G~v~~~~~l~CpYHGW~Fd~~G~c~~i 167 (538)
.||+|+.++||++|+++.++++|++|+|||+.+ |+++|++|+|||||++|++|.+++ +.|+||||||+||.+|+|+.+
T Consensus 1 gW~~v~~~~dl~~g~~~~~~~~g~~i~l~r~~~-g~~~a~~n~CpH~ga~L~~G~~~~-~~i~CP~Hg~~fd~~G~~~~~ 78 (115)
T cd03531 1 GWHCLGLARDFRDGKPHGVEAFGTKLVVFADSD-GALNVLDAYCRHMGGDLSQGTVKG-DEIACPFHDWRWGGDGRCKAI 78 (115)
T ss_pred CcEEEEEHHHCCCCCeEEEEECCeEEEEEECCC-CCEEEEcCcCCCCCCCCccCcccC-CEEECCCCCCEECCCCCEEEC
Confidence 599999999999999999999999999999876 899999999999999999999974 799999999999999999999
Q ss_pred CCCCCCCCCCCCccccccceeeEEEEcCeEEEccCCCC
Q 009277 168 PQAPPDGPPVHTFEKACAAVYPSTVQHDIVWFWPNIAP 205 (538)
Q Consensus 168 P~~~~~~~~~~~~~~~~l~~~pv~~~~G~IwV~~~~~~ 205 (538)
|+.... +....+++|||++++|+||||++++.
T Consensus 79 p~~~~~------p~~~~l~~ypv~~~~g~v~v~~~~~~ 110 (115)
T cd03531 79 PYARRV------PPLARTRAWPTLERNGQLFVWHDPEG 110 (115)
T ss_pred CcccCC------CcccccceEeEEEECCEEEEECCCCC
Confidence 975431 34567999999999999999998653
No 13
>cd03545 Rieske_RO_Alpha_OHBDO_like Rieske non-heme iron oxygenase (RO) family, Ortho-halobenzoate-1,2-dioxygenase (OHBDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of OHBDO, salicylate 5-hydroxylase (S5H), terephthalate 1,2-dioxygenase system (TERDOS) and similar proteins. ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. OHBDO converts 2-chlorobenzoate (2-CBA) to catechol as well as 2,4-dCBA and 2,5-dCBA to 4-chlorocatechol, as part of the chlorobenzoate degradation pathway. Although ortho-substituted chlorobe
Probab=99.95 E-value=2.2e-28 Score=226.36 Aligned_cols=132 Identities=17% Similarity=0.174 Sum_probs=113.8
Q ss_pred cccccccccccccc-CCeEEeeecCCCC-CCCcEEEEECCEEEEEEEeCCCCeEEEEecCCCCCCCCCCCCcccCCCeEE
Q 009277 73 ELETNSQEEKFDWF-SQWYPLMPVCDLD-KRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQ 150 (538)
Q Consensus 73 ~~~~~~~e~~f~~~-~~W~~v~~~~dL~-~g~~~~~~l~g~~lvv~r~~~~G~~~a~~d~CpHRga~Ls~G~v~~~~~l~ 150 (538)
.++..+.|.+.+|+ +.|++|++++||+ +|++..++++|++|+|+|+.+ |+++|++|+|||||++|++|..+.++.|+
T Consensus 9 d~~~~~~E~~~if~~~~W~~v~~~~el~~~g~~~~~~i~g~~iiv~r~~~-g~v~A~~n~CpHrg~~L~~g~~g~~~~i~ 87 (150)
T cd03545 9 DRAYFDREQERIFRGKTWSYVGLEAEIPNAGDFKSTFVGDTPVVVTRAED-GSLHAWVNRCAHRGALVCRERRGNDGSLT 87 (150)
T ss_pred CHHHHHHHHHhhhCCCceEEEEEHHHCCCCCCEEEEEECCceEEEEECCC-CCEEEEcccCcCCCCEecccccCCCCEEE
Confidence 35567889999998 9999999999998 589999999999999999876 89999999999999999998654457899
Q ss_pred eccCCcEEeCCCCcccCCCCCCCCC-----CCCCccccccceeeEEEEcCeEEEccCCCC
Q 009277 151 CVYHGWCFSGSGDCKFIPQAPPDGP-----PVHTFEKACAAVYPSTVQHDIVWFWPNIAP 205 (538)
Q Consensus 151 CpYHGW~Fd~~G~c~~iP~~~~~~~-----~~~~~~~~~l~~~pv~~~~G~IwV~~~~~~ 205 (538)
||||||+||.+|+|+.+|+.....+ ..+++.+.+|++|+|.+++|+|||++++++
T Consensus 88 CP~Hgw~Fdl~G~~~~ip~~~~~~~~~~~~~~~~~~~~~L~~~~v~~~~g~ifv~l~~~~ 147 (150)
T cd03545 88 CVYHQWAYDLKGNLKGVPFRRGLKGQGGMPKDFDMKQHGLEKLRVETVGGLVFASFSDEV 147 (150)
T ss_pred CCCCCCEECCCCCEEECccccccccccccccCcCHHHCCCcceeEeEECCEEEEEeCCCC
Confidence 9999999999999999998654211 124456678999999999999999998653
No 14
>cd03548 Rieske_RO_Alpha_OMO_CARDO Rieske non-heme iron oxygenase (RO) family, 2-Oxoquinoline 8-monooxygenase (OMO) and Carbazole 1,9a-dioxygenase (CARDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. OMO catalyzes the NADH-dependent oxidation of the N-heterocyclic aromatic compound 2-oxoquinoline to 8-hydroxy-2-oxoquinoline, the second step in the bacterial degradation of quinoline. OMO consists of a reductase component (OMR) and an oxygenase component (OMO) that together function to shuttle electrons from the
Probab=99.95 E-value=7.8e-28 Score=219.36 Aligned_cols=118 Identities=22% Similarity=0.470 Sum_probs=102.0
Q ss_pred cccccccCCeEEeeecCCCCCCCcEEEEECCEEEEEEEeCCCCeEEEEecCCCCCCCCCCCCcc-cCCCeEEeccCCcEE
Q 009277 80 EEKFDWFSQWYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRI-DQWGRLQCVYHGWCF 158 (538)
Q Consensus 80 e~~f~~~~~W~~v~~~~dL~~g~~~~~~l~g~~lvv~r~~~~G~~~a~~d~CpHRga~Ls~G~v-~~~~~l~CpYHGW~F 158 (538)
..++.|++.|++|+.++||++|+++.++++|++|+|+|. + |+++||+|+|||||++|++|.. ..++.|+||||||+|
T Consensus 6 ~~~~~~~~~W~~v~~~~el~~g~~~~~~~~g~~i~l~r~-~-g~v~A~~n~CpHrg~~L~~g~~~~~~~~i~Cp~Hgw~F 83 (136)
T cd03548 6 DAKWGFRNHWYPALFSHELEEGEPKGIQLCGEPILLRRV-D-GKVYALKDRCLHRGVPLSKKPECFTKGTITCWYHGWTY 83 (136)
T ss_pred ccccCcccCcEEEEEHHHCCCCCeEEEEECCcEEEEEec-C-CEEEEEeCcCcCCCCccccCcccccCCEEEecCCccEE
Confidence 345699999999999999999999999999999999984 5 8999999999999999999863 234689999999999
Q ss_pred eC-CCCcccCCCCCCCCCCCCCccccccceeeEEEEcCeEEEccCC
Q 009277 159 SG-SGDCKFIPQAPPDGPPVHTFEKACAAVYPSTVQHDIVWFWPNI 203 (538)
Q Consensus 159 d~-~G~c~~iP~~~~~~~~~~~~~~~~l~~~pv~~~~G~IwV~~~~ 203 (538)
|. +|+|+.+|+.+.. ....+.+|++|||++++|+|||++++
T Consensus 84 dl~tG~~~~~~~~p~~----~~~~~~~L~~ypv~~~~g~V~v~~~~ 125 (136)
T cd03548 84 RLDDGKLVTILANPDD----PLIGRTGLKTYPVEEAKGMIFVFVGD 125 (136)
T ss_pred eCCCccEEEcccCCCc----cccccCCCceEeEEEECCEEEEEeCC
Confidence 95 8999999865432 12345679999999999999999975
No 15
>cd03532 Rieske_RO_Alpha_VanA_DdmC Rieske non-heme iron oxygenase (RO) family, Vanillate-O-demethylase oxygenase (VanA) and dicamba O-demethylase oxygenase (DdmC) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. Vanillate-O-demethylase is a heterodimeric enzyme consisting of a terminal oxygenase (VanA) and reductase (VanB) components. This enzyme reductively catalyzes the conversion of vanillate into protocatechuate and formaldehyde. Protocatechuate and vanillate are important intermediate metabolites in the degrad
Probab=99.95 E-value=6.1e-28 Score=214.20 Aligned_cols=111 Identities=33% Similarity=0.667 Sum_probs=100.7
Q ss_pred ccCCeEEeeecCCCCCCCcEEEEECCEEEEEEEeCCCCeEEEEecCCCCCCCCCCCCcccCCCeEEeccCCcEEeCCCCc
Q 009277 85 WFSQWYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCVYHGWCFSGSGDC 164 (538)
Q Consensus 85 ~~~~W~~v~~~~dL~~g~~~~~~l~g~~lvv~r~~~~G~~~a~~d~CpHRga~Ls~G~v~~~~~l~CpYHGW~Fd~~G~c 164 (538)
+++.|++|+.++||+ +++..++++|++++|+|+.+ |+++|++|+|||||++|+.|.+. ++.|+||||||+||.+|+|
T Consensus 2 ~~~~W~~v~~~~el~-~~~~~~~~~g~~i~l~r~~~-g~~~a~~n~CpH~g~~L~~G~~~-~~~i~Cp~Hg~~fd~~G~~ 78 (116)
T cd03532 2 PRNAWYVAAWADELG-DKPLARTLLGEPVVLYRTQD-GRVAALEDRCPHRSAPLSKGSVE-GGGLVCGYHGLEFDSDGRC 78 (116)
T ss_pred cCCcEEEEEEHHHcC-CCcEEEEECCceEEEEECCC-CCEEEeCCcCCCCCCCccCCccc-CCEEEeCCCCcEEcCCCCE
Confidence 578999999999998 89999999999999999866 89999999999999999999997 4799999999999999999
Q ss_pred ccCCCCCCCCCCCCCccccccceeeEEEEcCeEEEccCCC
Q 009277 165 KFIPQAPPDGPPVHTFEKACAAVYPSTVQHDIVWFWPNIA 204 (538)
Q Consensus 165 ~~iP~~~~~~~~~~~~~~~~l~~~pv~~~~G~IwV~~~~~ 204 (538)
+.+|.... .+.+.++++|||++++|+||||++++
T Consensus 79 ~~~p~~~~------~~~~~~l~~~~v~~~~g~v~v~~~~~ 112 (116)
T cd03532 79 VHMPGQER------VPAKACVRSYPVVERDALIWIWMGDA 112 (116)
T ss_pred EeCCCCCC------CCCccccccCCEEEECCEEEEEcCCc
Confidence 99997543 23467899999999999999999854
No 16
>cd03472 Rieske_RO_Alpha_BPDO_like Rieske non-heme iron oxygenase (RO) family, Biphenyl dioxygenase (BPDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of BPDO and similar proteins including cumene dioxygenase (CumDO), nitrobenzene dioxygenase (NBDO), alkylbenzene dioxygenase (AkbDO) and dibenzofuran 4,4a-dioxygenase (DFDO). ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. BPDO degrades biphenyls and polychlorinated biphenyls (PCB's) while CumDO degrades cumene (isopropylbenzene), an aromatic hydrocarbon that is i
Probab=99.95 E-value=6e-28 Score=217.72 Aligned_cols=123 Identities=15% Similarity=0.179 Sum_probs=105.1
Q ss_pred cccccCCeEEeeecCCCCC-CCcEEEEECCEEEEEEEeCCCCeEEEEecCCCCCCCCCCCCcccCCCeEEeccCCcEEeC
Q 009277 82 KFDWFSQWYPLMPVCDLDK-RVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCVYHGWCFSG 160 (538)
Q Consensus 82 ~f~~~~~W~~v~~~~dL~~-g~~~~~~l~g~~lvv~r~~~~G~~~a~~d~CpHRga~Ls~G~v~~~~~l~CpYHGW~Fd~ 160 (538)
+.+|.+.|++|++++||++ |....++++|++|+|+|+.+ |+++|++|+|||||++|++|..++.+.|+||||||+||.
T Consensus 2 ~~i~~~~W~~v~~~~el~~~g~~~~~~~~~~~i~l~r~~~-g~i~A~~n~C~Hrg~~L~~g~~g~~~~i~CP~Hgw~fd~ 80 (128)
T cd03472 2 ERVFARSWLLLGHETHIPKAGDYLTTYMGEDPVIVVRQKD-GSIRVFLNQCRHRGMRICRSDAGNAKAFTCTYHGWAYDT 80 (128)
T ss_pred cchhhCCCeEeEEHHHCCCCCCEEEEEECCceEEEEECCC-CCEEEEhhhCcCCCCeeeccCCCCcCEEECCcCCeEECC
Confidence 4579999999999999985 66677889999999999876 899999999999999999998654458999999999999
Q ss_pred CCCcccCCCCCCCCCCCCCccccccceeeEEEEcCeEEEccCCCC
Q 009277 161 SGDCKFIPQAPPDGPPVHTFEKACAAVYPSTVQHDIVWFWPNIAP 205 (538)
Q Consensus 161 ~G~c~~iP~~~~~~~~~~~~~~~~l~~~pv~~~~G~IwV~~~~~~ 205 (538)
+|+|+.+|+.++..+..++.....++.++|.++.|+|||++++++
T Consensus 81 ~G~~~~~P~~~~~~~~~~~~~~~~l~~~~v~~~~g~vfv~~~~~~ 125 (128)
T cd03472 81 AGNLVNVPFEKEAFCDGLDKADWGPLQARVETYKGLIFANWDAEA 125 (128)
T ss_pred CcCEEeccCcccccccCCCHHHCCCcceeEeEECCEEEEEcCCCC
Confidence 999999998654322234455667999999999999999998753
No 17
>cd03539 Rieske_RO_Alpha_S5H This alignment model represents the N-terminal rieske iron-sulfur domain of the oxygenase alpha subunit (NagG) of salicylate 5-hydroxylase (S5H). S5H converts salicylate (2-hydroxybenzoate), a metabolic intermediate of phenanthrene, to gentisate (2,5-dihydroxybenzoate) as part of an alternate pathway for naphthalene catabolism. S5H is a multicomponent enzyme made up of NagGH (the oxygenase components), NagAa (the ferredoxin reductase component), and NagAb (the ferredoxin component). The oxygenase component is made up of alpha (NagG) and beta (NagH) subunits.
Probab=99.95 E-value=6.6e-28 Score=217.75 Aligned_cols=116 Identities=16% Similarity=0.193 Sum_probs=101.0
Q ss_pred eEEeeecCCCC-CCCcEEEEECCEEEEEEEeCCCCeEEEEecCCCCCCCCCCCCcccCCCeEEeccCCcEEeCCCCcccC
Q 009277 89 WYPLMPVCDLD-KRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCVYHGWCFSGSGDCKFI 167 (538)
Q Consensus 89 W~~v~~~~dL~-~g~~~~~~l~g~~lvv~r~~~~G~~~a~~d~CpHRga~Ls~G~v~~~~~l~CpYHGW~Fd~~G~c~~i 167 (538)
|++|++++||+ +|++.++.+++++|+|+|+.+ |+++||.|+||||+++|++|.+++.+.|+||||||+||.+|+|+.+
T Consensus 1 W~~v~~~~~l~~~g~~~~~~~~~~~v~v~r~~d-g~v~A~~n~C~Hrg~~L~~g~~~~~~~l~CPyHgw~fdl~G~l~~~ 79 (129)
T cd03539 1 WCYVGLEAEIPNPGDFKRTLIGERSVIMTRDPD-GGINVVENVCAHRGMRFCRERNGNAKDFVCPYHQWNYSLKGDLQGV 79 (129)
T ss_pred CEEEEEHHHCCCCCCEEEEEECCcEEEEEECCC-CCEEEEeccCcCCCCEeeeeccCccCEEECCCCCCEECCCCCEeec
Confidence 99999999998 588999999999999999876 8999999999999999999887544689999999999999999999
Q ss_pred CCCCCCC---------CCCCCccccccceeeEEEEcCeEEEccCCCC
Q 009277 168 PQAPPDG---------PPVHTFEKACAAVYPSTVQHDIVWFWPNIAP 205 (538)
Q Consensus 168 P~~~~~~---------~~~~~~~~~~l~~~pv~~~~G~IwV~~~~~~ 205 (538)
|+..+.. ++.+++.+.+|+.++|++++|+|||++++++
T Consensus 80 p~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~v~~~~g~Ifv~~~~~~ 126 (129)
T cd03539 80 PFRRGVKKDGKVNGGMPKDFKTKDHGLTKLKVATRGGVVFASFDHDV 126 (129)
T ss_pred cccccccccccccccccCCcChHHCCCceeeEeEECCEEEEEeCCCC
Confidence 9864321 1224566788999999999999999998654
No 18
>cd03541 Rieske_RO_Alpha_CMO Rieske non-heme iron oxygenase (RO) family, Choline monooxygenase (CMO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. CMO is a novel RO found in certain plants which catalyzes the first step in betaine synthesis. CMO is not found in animals or bacteria. In these organisms, the first step in betaine synthesis is catalyzed by either the membrane-bound choline dehydrogenase (CDH) or the soluble choline oxidase (COX).
Probab=99.94 E-value=4.2e-27 Score=209.11 Aligned_cols=113 Identities=19% Similarity=0.235 Sum_probs=101.8
Q ss_pred CeEEeeecCCCC-CCCcEEEEECCEEEEEEEeCCCCeEEEEecCCCCCCCCCCCCcccCCCeEEeccCCcEEeCCCCccc
Q 009277 88 QWYPLMPVCDLD-KRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCVYHGWCFSGSGDCKF 166 (538)
Q Consensus 88 ~W~~v~~~~dL~-~g~~~~~~l~g~~lvv~r~~~~G~~~a~~d~CpHRga~Ls~G~v~~~~~l~CpYHGW~Fd~~G~c~~ 166 (538)
.|++|++++||+ +|++++++++|++|+|+|+.+ |+++||.|+|||||++|++|.+++ +.|+||||||+||.+|+|+.
T Consensus 1 ~W~~v~~~~el~~~g~~~~~~~~g~~i~v~r~~d-g~v~A~~n~C~Hrg~~L~~g~~~~-~~i~CP~Hgw~f~l~G~l~~ 78 (118)
T cd03541 1 GWQVAGYSDQVKEKNQYFTGRLGNVEYVVCRDGN-GKLHAFHNVCTHRASILACGSGKK-SCFVCPYHGWVYGLDGSLTK 78 (118)
T ss_pred CCEEEEEHHHCCCCCCeEEEEECCeEEEEEECCC-CCEEEEeCCCCCCcCCccCCcccc-CEEEeCCCCCEEcCCCeEEe
Confidence 599999999999 577889999999999999876 899999999999999999998874 68999999999999999999
Q ss_pred CCCCCCCCCCCCCccccccceeeEEEEcCeEEEccCCC
Q 009277 167 IPQAPPDGPPVHTFEKACAAVYPSTVQHDIVWFWPNIA 204 (538)
Q Consensus 167 iP~~~~~~~~~~~~~~~~l~~~pv~~~~G~IwV~~~~~ 204 (538)
+|...... ..+.....|..++|.+++|+|||+++++
T Consensus 79 ~P~~~~~~--~~~~~~~~L~~~~~~~~~g~vfv~~~~~ 114 (118)
T cd03541 79 ATQATGIQ--NFNPKELGLVPLKVAEWGPFVLISVDRS 114 (118)
T ss_pred CCCccccc--CCCHHHCCCceEeEEEECCEEEEEeCCC
Confidence 99876532 3566778899999999999999999864
No 19
>cd03535 Rieske_RO_Alpha_NDO Rieske non-heme iron oxygenase (RO) family, Nathphalene 1,2-dioxygenase (NDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. NDO is a three-component RO system consisting of a reductase, a ferredoxin, and a hetero-hexameric alpha-beta subunit oxygenase component. NDO catalyzes the oxidation of naphthalene to cis-(1R,2S)-dihydroxy-1,2-dihydronaphthalene (naphthalene cis-dihydrodiol) with the consumption of O2 and NAD(P)H. NDO has a relaxed substrate specificity and can oxidize almost 1
Probab=99.94 E-value=1.5e-26 Score=207.33 Aligned_cols=118 Identities=14% Similarity=0.236 Sum_probs=99.6
Q ss_pred CCeEEeeecCCCCC-CCcEEEEECCEEEEEEEeCCCCeEEEEecCCCCCCCCCCCCcccCCCeEEeccCCcEEeCCCCcc
Q 009277 87 SQWYPLMPVCDLDK-RVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCVYHGWCFSGSGDCK 165 (538)
Q Consensus 87 ~~W~~v~~~~dL~~-g~~~~~~l~g~~lvv~r~~~~G~~~a~~d~CpHRga~Ls~G~v~~~~~l~CpYHGW~Fd~~G~c~ 165 (538)
+.|++|++++||++ |....++++|++++|+|+.+ |+++|++|+|||||++|++|.+++.+.|+||||||+||.||+|+
T Consensus 1 ~~w~~v~~~~el~~~g~~~~~~~~~~~iiv~r~~~-g~~~A~~n~CpHrg~~L~~g~~~~~~~i~Cp~Hgw~Fd~tG~~~ 79 (123)
T cd03535 1 RAWVFLGHESEIPNAGDYVVRYIGDDSFIVCRDED-GEIRAMFNSCRHRGMQVCRAEMGNTSHFRCPYHGWTYRNTGRLV 79 (123)
T ss_pred CCCEEEEEHHHCCCCCCEEEEEECCeEEEEEECCC-CCEEEEcccCccCCCEeeccccCCCCEEECCcCCCEECCCcCEe
Confidence 47999999999986 77777789999999999876 89999999999999999999876446899999999999999999
Q ss_pred cCCCCCCCCCCCCCccccccceeeE-EEEcCeEEEccCCCC
Q 009277 166 FIPQAPPDGPPVHTFEKACAAVYPS-TVQHDIVWFWPNIAP 205 (538)
Q Consensus 166 ~iP~~~~~~~~~~~~~~~~l~~~pv-~~~~G~IwV~~~~~~ 205 (538)
.+|......+..+...+.+|++||+ ++++|+|||++++++
T Consensus 80 ~~p~~~~~~~~~~~~~~~~L~~~~~~e~~~g~vfv~l~~~~ 120 (123)
T cd03535 80 GVPAQQEAYGGGFDKSQWGLRPAPNLDSYNGLIFGSLDPKA 120 (123)
T ss_pred eCCCcccccccCcCHHHCCCccceeEEEECCEEEEEeCCCC
Confidence 9998654322224456678999985 558999999998653
No 20
>cd03538 Rieske_RO_Alpha_AntDO Rieske non-heme iron oxygenase (RO) family, Anthranilate 1,2-dioxygenase (AntDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. AntDO converts anthranilate to catechol, a naturally occurring compound formed through tryptophan degradation and an important intermediate in the metabolism of many N-heterocyclic compounds such as indole, o-nitrobenzoate, carbazole, and quinaldine.
Probab=99.94 E-value=1e-26 Score=214.36 Aligned_cols=130 Identities=14% Similarity=0.143 Sum_probs=109.2
Q ss_pred cccccccccccccCCeEEeeecCCCC-CCCcEEEEECCEEEEEEEeCCCCeEEEEecCCCCCCCCCCCCc-ccCCCeEEe
Q 009277 74 LETNSQEEKFDWFSQWYPLMPVCDLD-KRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGR-IDQWGRLQC 151 (538)
Q Consensus 74 ~~~~~~e~~f~~~~~W~~v~~~~dL~-~g~~~~~~l~g~~lvv~r~~~~G~~~a~~d~CpHRga~Ls~G~-v~~~~~l~C 151 (538)
++..+.|.+.+|.+.|++|++++||+ +|++..++++|++|+|+|+.+ |+++|+.|+|||||++|+.+. ...++.|+|
T Consensus 8 ~~~~~~e~~~i~~~~W~~v~~~~elp~~G~~~~~~i~g~~i~v~r~~~-g~v~A~~n~CpHrg~~L~~~~~g~~~~~i~C 86 (146)
T cd03538 8 PEIFALEMERLFGNAWIYVGHESQVPNPGDYITTRIGDQPVVMVRHTD-GSVHVLYNRCPHKGTKIVSDGCGNTGKFFRC 86 (146)
T ss_pred HHHHHHHHHHHhhcCCEEEEEHHHCCCCCCEEEEEECCeeEEEEECCC-CCEEEEeccCcCCCCEeecccccccCCEEEC
Confidence 44567889999999999999999998 699999999999999999876 899999999999999997544 332357999
Q ss_pred ccCCcEEeCCCCcccCCCCCCCCCCCCCc--ccccccee-eEEEEcCeEEEccCCC
Q 009277 152 VYHGWCFSGSGDCKFIPQAPPDGPPVHTF--EKACAAVY-PSTVQHDIVWFWPNIA 204 (538)
Q Consensus 152 pYHGW~Fd~~G~c~~iP~~~~~~~~~~~~--~~~~l~~~-pv~~~~G~IwV~~~~~ 204 (538)
|||||+||.||+|+.+|......+..++. ...+|+.+ .|++++|+|||+++++
T Consensus 87 P~Hgw~Fd~~G~~~~~p~~~~~~~~~~~~~~~~~~L~~~~~v~~~~g~ifv~~~~~ 142 (146)
T cd03538 87 PYHAWSFKTDGSLLAIPLKKGYEGTGFDPSHADKGMQRVGAVDIYRGFVFARLSPS 142 (146)
T ss_pred CCCCCEECCCCCEEECCchhcCCcccCCcchhhCCCCcceeEEEECCEEEEEcCCC
Confidence 99999999999999999876542211222 35689999 6999999999999865
No 21
>cd03469 Rieske_RO_Alpha_N Rieske non-heme iron oxygenase (RO) family, N-terminal Rieske domain of the oxygenase alpha subunit; The RO family comprise a large class of aromatic ring-hydroxylating dioxygenases found predominantly in microorganisms. These enzymes enable microorganisms to tolerate and even exclusively utilize aromatic compounds for growth. ROs consist of two or three components: reductase, oxygenase, and ferredoxin (in some cases) components. The oxygenase component may contain alpha and beta subunits, with the beta subunit having a purely structural function. Some oxygenase components contain only an alpha subunit. The oxygenase alpha subunit has two domains, an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from the reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. Reduced pyridine nucleotide is used as the i
Probab=99.93 E-value=4.2e-26 Score=202.41 Aligned_cols=113 Identities=28% Similarity=0.409 Sum_probs=99.9
Q ss_pred eEEeeecCCCC-CCCcEEEEECCEEEEEEEeCCCCeEEEEecCCCCCCCCCCCCcccCCCeEEeccCCcEEeCCCCcccC
Q 009277 89 WYPLMPVCDLD-KRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCVYHGWCFSGSGDCKFI 167 (538)
Q Consensus 89 W~~v~~~~dL~-~g~~~~~~l~g~~lvv~r~~~~G~~~a~~d~CpHRga~Ls~G~v~~~~~l~CpYHGW~Fd~~G~c~~i 167 (538)
||+|+.++||+ +|+++.+++.|++++|+|+.+ |+++|++|+||||+++|+.|.+.+++.|+||||||+||.+|+|+.+
T Consensus 1 w~~v~~~~el~~~g~~~~~~~~~~~i~v~r~~~-g~~~a~~n~CpH~g~~L~~g~~~~~~~i~Cp~Hg~~Fd~~G~~~~~ 79 (118)
T cd03469 1 WYFVGHSSELPEPGDYVTLELGGEPLVLVRDRD-GEVRAFHNVCPHRGARLCEGRGGNAGRLVCPYHGWTYDLDGKLVGV 79 (118)
T ss_pred CEEeEEHHHCCCCCCEEEEEECCccEEEEECCC-CCEEEEEEeCCCCCCEeeeccCCCCCEEECCCCCCEECCCCcEEeC
Confidence 99999999999 899999999999999999865 8999999999999999999998334799999999999988999999
Q ss_pred CCCCCCCCCCCCccccccceeeEEEEcCeEEEccCCC
Q 009277 168 PQAPPDGPPVHTFEKACAAVYPSTVQHDIVWFWPNIA 204 (538)
Q Consensus 168 P~~~~~~~~~~~~~~~~l~~~pv~~~~G~IwV~~~~~ 204 (538)
|...... ...+++.+|++|||++++|+|||+++++
T Consensus 80 P~~~~~~--~~~~~~~~L~~~~v~~~~g~v~v~~~~~ 114 (118)
T cd03469 80 PREEGFP--GFDKEKLGLRTVPVEEWGGLIFVNLDPD 114 (118)
T ss_pred CcccccC--CCCHHHCCCeEEEEEEECCEEEEEcCCC
Confidence 9765421 1335567899999999999999999864
No 22
>cd03536 Rieske_RO_Alpha_DTDO This alignment model represents the N-terminal rieske domain of the oxygenase alpha subunit (DitA) of diterpenoid dioxygenase (DTDO). DTDO is a novel aromatic-ring-hydroxylating dioxygenase found in Pseudomonas and other proteobacteria that degrades dehydroabietic acid (DhA). Specifically, DitA hydroxylates 7-oxodehydroabietic acid to 7-oxo-11,12-dihydroxy-8, 13-abietadien acid. The ditA1 and ditA2 genes encode the alpha and beta subunits of the oxygenase component of DTDO while the ditA3 gene encodes the ferredoxin component of DTDO. The organization of the genes encoding the various diterpenoid dioxygenase components, the phylogenetic distinctiveness of both the alpha subunit and the ferredoxin component, and the unusual iron-sulfur cluster of the ferredoxin all suggest that this enzyme belongs to a new class of aromatic ring-hydroxylating dioxygenases.
Probab=99.93 E-value=8.9e-26 Score=202.34 Aligned_cols=116 Identities=22% Similarity=0.250 Sum_probs=98.9
Q ss_pred eEEeeecCCCCC-CCcEEEEECCEEEEEEEeCCCCeEEEEecCCCCCCCCCCCCcccCCCeEEeccCCcEEeCCCCcccC
Q 009277 89 WYPLMPVCDLDK-RVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCVYHGWCFSGSGDCKFI 167 (538)
Q Consensus 89 W~~v~~~~dL~~-g~~~~~~l~g~~lvv~r~~~~G~~~a~~d~CpHRga~Ls~G~v~~~~~l~CpYHGW~Fd~~G~c~~i 167 (538)
|+.|++++||++ |.+..+++.|++|+|+|+.+ |+++||+|+||||+++|+.|..++.+.|+||||||+||.+|+|+.+
T Consensus 1 w~~v~~~~el~~~g~~~~~~~~~~~i~v~r~~~-g~v~A~~n~CpH~g~~L~~~~~~~~~~i~Cp~Hgw~fd~~G~~~~~ 79 (123)
T cd03536 1 WVLLGHESEIPNKGDFMVRDMGSDSVIVARDKD-GEIHVSLNVCPHRGMRISTTDGGNTQIHVCIYHGWAFRPNGDFIGA 79 (123)
T ss_pred CEEeEEHHHCCCCCCEEEEEECCceEEEEECCC-CCEEEEeeeCCCCCCCcccccCCCcCEEECCcCCCEECCCCcEEEC
Confidence 999999999996 77777789999999999866 8999999999999999999877544579999999999999999999
Q ss_pred CCCCCCC-CCCCCccccccceeeEEEEcCeEEEccCCCC
Q 009277 168 PQAPPDG-PPVHTFEKACAAVYPSTVQHDIVWFWPNIAP 205 (538)
Q Consensus 168 P~~~~~~-~~~~~~~~~~l~~~pv~~~~G~IwV~~~~~~ 205 (538)
|...... .....+...+|++|+|++++|+|||++++++
T Consensus 80 p~~~~~~~~~~~~~~~~~L~~~~v~~~~g~Ifv~~~~~~ 118 (123)
T cd03536 80 PVEKECMHGKMRTKAELGLHKARVTLYGGLIFATWNIDG 118 (123)
T ss_pred CccccccccCCCCHHHCCCcceeEEEECCEEEEEeCCCC
Confidence 9864321 1123456678999999999999999998654
No 23
>cd03542 Rieske_RO_Alpha_HBDO Rieske non-heme iron oxygenase (RO) family, 2-Halobenzoate 1,2-dioxygenase (HBDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. HBDO catalyzes the double hydroxylation of 2-halobenzoates with concomitant release of halogenide and carbon dioxide, yielding catechol.
Probab=99.91 E-value=3.9e-24 Score=191.55 Aligned_cols=116 Identities=20% Similarity=0.300 Sum_probs=96.3
Q ss_pred eEEeeecCCCCC-CCcEEEEECCEEEEEEEeCCCCeEEEEecCCCCCCCCCCCCcccCCCeEEeccCCcEEeCCCCcccC
Q 009277 89 WYPLMPVCDLDK-RVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCVYHGWCFSGSGDCKFI 167 (538)
Q Consensus 89 W~~v~~~~dL~~-g~~~~~~l~g~~lvv~r~~~~G~~~a~~d~CpHRga~Ls~G~v~~~~~l~CpYHGW~Fd~~G~c~~i 167 (538)
|..|++++||++ |+...+++.|++|+|+|+.+ |+++|+.|.|||||++|+.|..++.+.|+||||||+||.||+|+.+
T Consensus 1 w~~v~~~~elp~~g~~~~~~~~~~~i~l~r~~~-g~v~A~~n~C~Hrg~~L~~g~~~~~~~i~CP~Hg~~Fd~~G~~~~~ 79 (123)
T cd03542 1 WVYLAHESQIPNNNDYFTTTIGRQPVVITRDKD-GELNAFINACSHRGAMLCRRKQGNKGTFTCPFHGWTFSNTGKLLKV 79 (123)
T ss_pred CEEeEEHHHCCCCCCEEEEEECCcEEEEEECCC-CCEEEEcccCcCCCCccccccccCCCEEECcCCCCEecCCccEEEC
Confidence 899999999995 77888899999999999876 8999999999999999999877544689999999999999999999
Q ss_pred CCCCCC-CCCCCCcc-ccccceee-EEEEcCeEEEccCCCC
Q 009277 168 PQAPPD-GPPVHTFE-KACAAVYP-STVQHDIVWFWPNIAP 205 (538)
Q Consensus 168 P~~~~~-~~~~~~~~-~~~l~~~p-v~~~~G~IwV~~~~~~ 205 (538)
|..... -+..+++. +.+|..++ +++++|+|||++++++
T Consensus 80 p~~~~~~y~~~~~~~~~~~L~~~~~~~~~~g~v~~~~~~~~ 120 (123)
T cd03542 80 KDPKTAGYPEGFNCDGSHDLTKVARFESYRGFLFGSLNADV 120 (123)
T ss_pred CcccccCcCcccChhhcCCCccceeEEEECCEEEEEcCCCC
Confidence 964321 12223333 46788886 6677999999998653
No 24
>cd03528 Rieske_RO_ferredoxin Rieske non-heme iron oxygenase (RO) family, Rieske ferredoxin component; composed of the Rieske ferredoxin component of some three-component RO systems including biphenyl dioxygenase (BPDO) and carbazole 1,9a-dioxygenase (CARDO). The RO family comprise a large class of aromatic ring-hydroxylating dioxygenases found predominantly in microorganisms. These enzymes enable microorganisms to tolerate and even exclusively utilize aromatic compounds for growth. ROs consist of two or three components: reductase, oxygenase, and ferredoxin (in some cases) components. The ferredoxin component contains either a plant-type or Rieske-type [2Fe-2S] cluster. The Rieske ferredoxin component in this family carries an electron from the RO reductase component to the terminal RO oxygenase component. BPDO degrades biphenyls and polychlorinated biphenyls. BPDO ferredoxin (BphF) has structural features consistent with a minimal and perhaps archetypical Rieske protein in that the in
Probab=99.91 E-value=9.3e-24 Score=181.32 Aligned_cols=96 Identities=28% Similarity=0.467 Sum_probs=88.2
Q ss_pred eEEeeecCCCCCCCcEEEEECCEEEEEEEeCCCCeEEEEecCCCCCCCCCCCCcccCCCeEEeccCCcEEeC-CCCcccC
Q 009277 89 WYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCVYHGWCFSG-SGDCKFI 167 (538)
Q Consensus 89 W~~v~~~~dL~~g~~~~~~l~g~~lvv~r~~~~G~~~a~~d~CpHRga~Ls~G~v~~~~~l~CpYHGW~Fd~-~G~c~~i 167 (538)
|++++.++||++|+++.+++.|++++|+|++ |+++||+|+|||+|++|+.|.++ ++.|+||||||+||. +|+|+..
T Consensus 1 w~~v~~~~~l~~g~~~~~~~~g~~~~v~r~~--~~~~a~~~~CpH~g~~L~~g~~~-~~~i~Cp~Hg~~fd~~~G~~~~~ 77 (98)
T cd03528 1 WVRVCAVDELPEGEPKRVDVGGRPIAVYRVD--GEFYATDDLCTHGDASLSEGYVE-GGVIECPLHGGRFDLRTGKALSL 77 (98)
T ss_pred CeEEEEhhhcCCCCEEEEEECCeEEEEEEEC--CEEEEECCcCCCCCCCCCCCeEe-CCEEEeCCcCCEEECCCCcccCC
Confidence 9999999999999999999999999999983 69999999999999999999876 479999999999996 9999988
Q ss_pred CCCCCCCCCCCCccccccceeeEEEEcCeEEE
Q 009277 168 PQAPPDGPPVHTFEKACAAVYPSTVQHDIVWF 199 (538)
Q Consensus 168 P~~~~~~~~~~~~~~~~l~~~pv~~~~G~IwV 199 (538)
|.. ..|++||+++++|.|||
T Consensus 78 p~~------------~~L~~~~v~~~~g~v~v 97 (98)
T cd03528 78 PAT------------EPLKTYPVKVEDGDVYV 97 (98)
T ss_pred CCC------------CCcceEeEEEECCEEEE
Confidence 742 24899999999999998
No 25
>cd03530 Rieske_NirD_small_Bacillus Small subunit of nitrite reductase (NirD) family, Rieske domain; composed of proteins similar to the Bacillus subtilis small subunit of assimilatory nitrite reductase containing a Rieske domain. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. Assimilatory nitrate and nitrite reductases convert nitrate through nitrite to ammonium.
Probab=99.90 E-value=1.6e-23 Score=180.02 Aligned_cols=97 Identities=24% Similarity=0.542 Sum_probs=87.0
Q ss_pred eEEeeecCCCCCCCcEEEEECCEEEEEEEeCCCCeEEEEecCCCCCCCCCCCCcccCCCeEEeccCCcEEeC-CCCcccC
Q 009277 89 WYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCVYHGWCFSG-SGDCKFI 167 (538)
Q Consensus 89 W~~v~~~~dL~~g~~~~~~l~g~~lvv~r~~~~G~~~a~~d~CpHRga~Ls~G~v~~~~~l~CpYHGW~Fd~-~G~c~~i 167 (538)
|++|+.++||++|+.+.+++.|++++|+|+.+ |+++||+|+|||||++|+.|.+++ +.|+||||||+||. +|+|..
T Consensus 1 w~~v~~~~~l~~~~~~~~~~~g~~i~l~r~~~-g~~~A~~~~CpH~g~~L~~g~~~~-~~i~Cp~Hg~~Fdl~~G~~~~- 77 (98)
T cd03530 1 WIDIGALEDIPPRGARKVQTGGGEIAVFRTAD-DEVFALENRCPHKGGPLSEGIVHG-EYVTCPLHNWVIDLETGEAQG- 77 (98)
T ss_pred CEEEEEHHHCCCCCcEEEEECCEEEEEEEeCC-CCEEEEcCcCCCCCCCccCCEEcC-CEEECCCCCCEEECCCCCCCC-
Confidence 99999999999999999999999999999876 899999999999999999999874 79999999999994 888753
Q ss_pred CCCCCCCCCCCCccccccceeeEEEEcCeEEEc
Q 009277 168 PQAPPDGPPVHTFEKACAAVYPSTVQHDIVWFW 200 (538)
Q Consensus 168 P~~~~~~~~~~~~~~~~l~~~pv~~~~G~IwV~ 200 (538)
|. ..+|++||+++++|.|||.
T Consensus 78 p~------------~~~l~~y~v~v~~g~v~v~ 98 (98)
T cd03530 78 PD------------EGCVRTFPVKVEDGRVYLG 98 (98)
T ss_pred CC------------CCccceEeEEEECCEEEEC
Confidence 31 2359999999999999984
No 26
>cd03529 Rieske_NirD Assimilatory nitrite reductase (NirD) family, Rieske domain; Assimilatory nitrate and nitrite reductases convert nitrate through nitrite to ammonium. Members include bacterial and fungal proteins. The bacterial NirD contains a single Rieske domain while fungal proteins have a C-terminal Rieske domain in addition to several other domains. The fungal NirD is involved in nutrient acquisition, functioning at the soil/fungus interface to control nutrient exchange between the fungus and the host plant. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. The Rieske [2Fe-2S] cluster is liganded to two histidine and two cysteine residues present in conserved sequences called Rieske motifs. In this family, only a few members contain these residues. Other members may have lost the ability to bind the Rieske [2Fe-2S] cluster.
Probab=99.90 E-value=3.1e-23 Score=180.16 Aligned_cols=97 Identities=21% Similarity=0.240 Sum_probs=87.3
Q ss_pred eEEeeecCCCCCCCcEEEEECCEEEEEEEeCCCCeEEEEecCCCCCCCC-CCCCcccC---CCeEEeccCCcEEe-CCCC
Q 009277 89 WYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAP-LSEGRIDQ---WGRLQCVYHGWCFS-GSGD 163 (538)
Q Consensus 89 W~~v~~~~dL~~g~~~~~~l~g~~lvv~r~~~~G~~~a~~d~CpHRga~-Ls~G~v~~---~~~l~CpYHGW~Fd-~~G~ 163 (538)
|++|+.++||++|+.+.+++.|++|+|+|.++ |+++|++|+|||++++ |++|.+.. ++.|+||||||+|| .+|+
T Consensus 1 w~~v~~~~~l~~g~~~~~~~~g~~i~l~r~~~-g~~~A~~~~CpH~g~~ll~~G~~~~~~~~~~i~Cp~Hg~~Fdl~tG~ 79 (103)
T cd03529 1 WQTVCALDDLPPGSGVAALVGDTQIAIFRLPG-REVYAVQNMDPHSRANVLSRGIVGDIGGEPVVASPLYKQHFSLKTGR 79 (103)
T ss_pred CEEEeEHHHCCCCCcEEEEECCEEEEEEEeCC-CeEEEEeCcCCCCCCcccCCceEcccCCCeEEECCCCCCEEEcCCCC
Confidence 99999999999999999999999999999864 6999999999999997 89998742 24799999999999 7999
Q ss_pred cccCCCCCCCCCCCCCccccccceeeEEEEcCeEEE
Q 009277 164 CKFIPQAPPDGPPVHTFEKACAAVYPSTVQHDIVWF 199 (538)
Q Consensus 164 c~~iP~~~~~~~~~~~~~~~~l~~~pv~~~~G~IwV 199 (538)
|+..|. .+|++|||++++|.|||
T Consensus 80 ~~~~p~-------------~~l~~y~v~~~~g~v~v 102 (103)
T cd03529 80 CLEDED-------------VSVATFPVRVEDGEVYV 102 (103)
T ss_pred ccCCCC-------------ccEeeEeEEEECCEEEE
Confidence 998763 24999999999999998
No 27
>cd03474 Rieske_T4moC Toluene-4-monooxygenase effector protein complex (T4mo), Rieske ferredoxin subunit; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. T4mo is a four-protein complex that catalyzes the NADH- and O2-dependent hydroxylation of toluene to form p-cresol. T4mo consists of an NADH oxidoreductase (T4moF), a diiron hydroxylase (T4moH), a catalytic effector protein (T4moD), and a Rieske ferredoxin (T4moC). T4moC contains a Rieske domain and functions as an obligate electron carrier between T4moF and T4moH. Rieske ferredoxins are found as subunits of membrane oxidase complexes, cis-dihydrodiol-forming aromatic dioxygenases, bacterial assimilatory nitrite reductases, and arsenite oxidase. Rieske ferredoxins are also found as soluble electron carriers in bacterial dioxygenase and monooxygenase complexes.
Probab=99.89 E-value=9.7e-23 Score=178.39 Aligned_cols=102 Identities=26% Similarity=0.407 Sum_probs=88.8
Q ss_pred eEEeeecCCCCCCCcEEEEECCEEEEEEEeCCCCeEEEEecCCCCCCCCCCCCcccCCCeEEeccCCcEEeC-CCCcccC
Q 009277 89 WYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCVYHGWCFSG-SGDCKFI 167 (538)
Q Consensus 89 W~~v~~~~dL~~g~~~~~~l~g~~lvv~r~~~~G~~~a~~d~CpHRga~Ls~G~v~~~~~l~CpYHGW~Fd~-~G~c~~i 167 (538)
|.+|+.++||++|+++.+++.|++++|+|+.+ |+++|+.|+|||||++|+.|.+++ +.|+||||||+||. +|.|..
T Consensus 1 w~~v~~~~~l~~g~~~~~~~~~~~~~~~~~~~-g~~~A~~n~CpH~g~~L~~g~~~g-~~i~CP~Hg~~Fdl~~G~~~~- 77 (108)
T cd03474 1 FTKVCSLDDVWEGEMELVDVDGEEVLLVAPEG-GEFRAFQGICPHQEIPLAEGGFDG-GVLTCRAHLWQFDADTGEGLN- 77 (108)
T ss_pred CeEeeehhccCCCceEEEEECCeEEEEEEccC-CeEEEEcCcCCCCCCCcccCcccC-CEEEeCCcCCEEECCCccccC-
Confidence 89999999999999999999999898888776 899999999999999999999764 68999999999994 666653
Q ss_pred CCCCCCCCCCCCccccccceeeEEEEcCeEEEccCCCC
Q 009277 168 PQAPPDGPPVHTFEKACAAVYPSTVQHDIVWFWPNIAP 205 (538)
Q Consensus 168 P~~~~~~~~~~~~~~~~l~~~pv~~~~G~IwV~~~~~~ 205 (538)
| ...+|++|||++++|.|||+++.++
T Consensus 78 ~------------~~~~L~~~~v~v~~g~v~v~~~~~~ 103 (108)
T cd03474 78 P------------RDCRLARYPVKVEGGDILVDTEGVL 103 (108)
T ss_pred C------------CCCccceEeEEEECCEEEEeCCCcC
Confidence 2 1246999999999999999987543
No 28
>TIGR02377 MocE_fam_FeS Rieske [2Fe-2S] domain protein, MocE subfamily. This model describes a subfamily of the Rieske-like [2Fe-2S] family of ferredoxins that includes MocE, part of the rhizopine (3-O-methyl-scyllo-inosamine) catabolic cluster in Rhizobium. Members of this family are related to, yet distinct from, the small subunit of nitrite reductase [NAD(P)H].
Probab=99.88 E-value=1.5e-22 Score=175.27 Aligned_cols=99 Identities=18% Similarity=0.355 Sum_probs=90.1
Q ss_pred CeEEeeecCCCCCCCcEEEEECCEEEEEEEeCCCCeEEEEecCCCCCCCCCCCCcccCCCeEEeccCCcEEe-CCCCccc
Q 009277 88 QWYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCVYHGWCFS-GSGDCKF 166 (538)
Q Consensus 88 ~W~~v~~~~dL~~g~~~~~~l~g~~lvv~r~~~~G~~~a~~d~CpHRga~Ls~G~v~~~~~l~CpYHGW~Fd-~~G~c~~ 166 (538)
.|+.++..+||++|....+++.|++|+|+|..+ |+++|++|+|||++++|+.|.+++ +.|.||+|||+|| .||+|+.
T Consensus 1 ~w~~v~~~~dl~~g~~~~~~~~g~~i~l~r~~~-g~~~A~~~~CpH~g~~L~~G~~~~-~~i~CP~Hg~~Fdl~tG~~~~ 78 (101)
T TIGR02377 1 NWVKACDADDIGREDVARFDHGGRTFAIYRTPD-DQYYATDGLCTHEYAHLADGLVMD-TTVECPKHAGCFDYRTGEALN 78 (101)
T ss_pred CcEEEEEHHHcCCCCEEEEEECCeEEEEEEeCC-CEEEEEcCcCCCCCCCCCCCEEcC-CEEECCccCCEEECCCCcccC
Confidence 499999999999999999999999999999755 799999999999999999999974 7999999999999 6999998
Q ss_pred CCCCCCCCCCCCCccccccceeeEEEEcCeEEEc
Q 009277 167 IPQAPPDGPPVHTFEKACAAVYPSTVQHDIVWFW 200 (538)
Q Consensus 167 iP~~~~~~~~~~~~~~~~l~~~pv~~~~G~IwV~ 200 (538)
.|.. ..|++|||++++|.|||-
T Consensus 79 ~p~~------------~~l~~y~v~v~~g~v~V~ 100 (101)
T TIGR02377 79 PPVC------------VNLKTYPVKVVDGAVYVD 100 (101)
T ss_pred CCcc------------CCcceEeEEEECCEEEEe
Confidence 7742 248999999999999984
No 29
>TIGR02378 nirD_assim_sml nitrite reductase [NAD(P)H], small subunit. This model describes NirD, the small subunit of nitrite reductase [NAD(P)H] (the assimilatory nitrite reductase), which associates with NirB, the large subunit (TIGR02374). In a few bacteria such as Klebsiella pneumoniae and in Fungi, the two regions are fused.
Probab=99.88 E-value=1.7e-22 Score=175.99 Aligned_cols=99 Identities=16% Similarity=0.302 Sum_probs=87.9
Q ss_pred CeEEeeecCCCCCCCcEEEEECCEEEEEEEeCCCCeEEEEecCCCCC-CCCCCCCcccCCC---eEEeccCCcEEe-CCC
Q 009277 88 QWYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHR-LAPLSEGRIDQWG---RLQCVYHGWCFS-GSG 162 (538)
Q Consensus 88 ~W~~v~~~~dL~~g~~~~~~l~g~~lvv~r~~~~G~~~a~~d~CpHR-ga~Ls~G~v~~~~---~l~CpYHGW~Fd-~~G 162 (538)
.|++|+.++||++|..+.+++.|++|+|+|..+ |+++|++|+|||+ +.+|++|.+.+.. .|+||||||+|| .+|
T Consensus 1 ~w~~v~~~~el~~g~~~~~~v~g~~l~v~r~~~-~~~~a~~~~CpH~g~~~L~~g~~~~~~~~~~i~Cp~Hg~~Fdl~tG 79 (105)
T TIGR02378 1 TWQDICAIDDIPEETGVCVLLGDTQIAIFRVPG-DQVFAIQNMCPHKRAFVLSRGIVGDAQGELWVACPLHKRNFRLEDG 79 (105)
T ss_pred CcEEEEEHHHCCCCCcEEEEECCEEEEEEEeCC-CcEEEEeCcCCCCCCccccceEEccCCCcEEEECCcCCCEEEcCCc
Confidence 599999999999999999999999999999865 7999999999999 8999999887431 299999999999 589
Q ss_pred CcccCCCCCCCCCCCCCccccccceeeEEEEcCeEEEc
Q 009277 163 DCKFIPQAPPDGPPVHTFEKACAAVYPSTVQHDIVWFW 200 (538)
Q Consensus 163 ~c~~iP~~~~~~~~~~~~~~~~l~~~pv~~~~G~IwV~ 200 (538)
+|+..|. .+|++||+++++|.|||-
T Consensus 80 ~~~~~~~-------------~~L~~y~v~v~~g~v~v~ 104 (105)
T TIGR02378 80 RCLEDDS-------------GSVRTYEVRVEDGRVYVA 104 (105)
T ss_pred cccCCCC-------------ccEeeEeEEEECCEEEEe
Confidence 9986442 359999999999999985
No 30
>PRK09965 3-phenylpropionate dioxygenase ferredoxin subunit; Provisional
Probab=99.87 E-value=7.1e-22 Score=172.51 Aligned_cols=101 Identities=21% Similarity=0.301 Sum_probs=89.1
Q ss_pred CeEEeeecCCCCCCCcEEEEECCEEEEEEEeCCCCeEEEEecCCCCCCCCCCCCcccCCCeEEeccCCcEEe-CCCCccc
Q 009277 88 QWYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCVYHGWCFS-GSGDCKF 166 (538)
Q Consensus 88 ~W~~v~~~~dL~~g~~~~~~l~g~~lvv~r~~~~G~~~a~~d~CpHRga~Ls~G~v~~~~~l~CpYHGW~Fd-~~G~c~~ 166 (538)
.|+.|+.++||++|..+.+.+. ++|+|+|. + |+++|++|+|||++++|+.|.+++++.|+||+|||+|| .+|+|+.
T Consensus 2 ~~~~v~~~~~l~~g~~~~~~~~-~~i~v~~~-~-g~~~A~~~~CpH~g~~L~~G~~~~~~~i~Cp~Hg~~Fd~~tG~~~~ 78 (106)
T PRK09965 2 NRIYACPVADLPEGEALRVDTS-PVIALFNV-G-GEFYAIDDRCSHGNASLSEGYLEDDATVECPLHAASFCLRTGKALC 78 (106)
T ss_pred CcEEeeeHHHcCCCCeEEEeCC-CeEEEEEE-C-CEEEEEeCcCCCCCCCCCceEECCCCEEEcCCCCCEEEcCCCCeeC
Confidence 3899999999999999888876 88999986 4 89999999999999999999997546899999999999 5999997
Q ss_pred CCCCCCCCCCCCCccccccceeeEEEEcCeEEEccCC
Q 009277 167 IPQAPPDGPPVHTFEKACAAVYPSTVQHDIVWFWPNI 203 (538)
Q Consensus 167 iP~~~~~~~~~~~~~~~~l~~~pv~~~~G~IwV~~~~ 203 (538)
.|. ...|++|++++++|.|||.+..
T Consensus 79 ~p~------------~~~l~~y~v~v~~g~v~v~~~~ 103 (106)
T PRK09965 79 LPA------------TDPLRTYPVHVEGGDIFIDLPE 103 (106)
T ss_pred CCC------------CCCcceEeEEEECCEEEEEccC
Confidence 663 2359999999999999998753
No 31
>cd03478 Rieske_AIFL_N AIFL (apoptosis-inducing factor like) family, N-terminal Rieske domain; members of this family show similarity to human AIFL, containing an N-terminal Rieske domain and a C-terminal pyridine nucleotide-disulfide oxidoreductase domain (Pyr_redox). The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. AIFL shares 35% homology with human AIF (apoptosis-inducing factor), mainly in the Pyr_redox domain. AIFL is predominantly localized to the mitochondria. AIFL induces apoptosis in a caspase-dependent manner.
Probab=99.87 E-value=6.4e-22 Score=169.20 Aligned_cols=92 Identities=27% Similarity=0.486 Sum_probs=84.0
Q ss_pred eeecCCCCCCCcEEEEECCEEEEEEEeCCCCeEEEEecCCCCCCCCCCCCcccCCCeEEeccCCcEEeC-CCCcccCCCC
Q 009277 92 LMPVCDLDKRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCVYHGWCFSG-SGDCKFIPQA 170 (538)
Q Consensus 92 v~~~~dL~~g~~~~~~l~g~~lvv~r~~~~G~~~a~~d~CpHRga~Ls~G~v~~~~~l~CpYHGW~Fd~-~G~c~~iP~~ 170 (538)
|+.++||++|++..+++.|++|+|+|. + |+++|++|+|||++++|+.|.+.+ +.|+||||||+||. +|+|+..|..
T Consensus 3 v~~~~~l~~g~~~~~~~~~~~v~v~r~-~-g~~~A~~~~CpH~g~~L~~g~~~~-~~i~CP~Hg~~Fdl~tG~~~~~p~~ 79 (95)
T cd03478 3 VCRLSDLGDGEMKEVDVGDGKVLLVRQ-G-GEVHAIGAKCPHYGAPLAKGVLTD-GRIRCPWHGACFNLRTGDIEDAPAL 79 (95)
T ss_pred eeehhhCCCCCEEEEEeCCcEEEEEEE-C-CEEEEEcCcCcCCCCccCCCeEeC-CEEEcCCCCCEEECCCCcCcCCCcc
Confidence 788999999999999999999999997 4 799999999999999999999874 79999999999995 9999998853
Q ss_pred CCCCCCCCCccccccceeeEEEEcCeEE
Q 009277 171 PPDGPPVHTFEKACAAVYPSTVQHDIVW 198 (538)
Q Consensus 171 ~~~~~~~~~~~~~~l~~~pv~~~~G~Iw 198 (538)
..|++||+++++|.||
T Consensus 80 ------------~~l~~~~v~~~~g~i~ 95 (95)
T cd03478 80 ------------DSLPCYEVEVEDGRVY 95 (95)
T ss_pred ------------CCcceEEEEEECCEEC
Confidence 2489999999999987
No 32
>PRK09511 nirD nitrite reductase small subunit; Provisional
Probab=99.84 E-value=1.3e-20 Score=165.11 Aligned_cols=100 Identities=19% Similarity=0.211 Sum_probs=87.0
Q ss_pred CeEEeeecCCCCCCCcEEEEECCEEEEEEEeCCCCeEEEEecCCCCCCCC-CCCCcccC-CC--eEEeccCCcEEe-CCC
Q 009277 88 QWYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAP-LSEGRIDQ-WG--RLQCVYHGWCFS-GSG 162 (538)
Q Consensus 88 ~W~~v~~~~dL~~g~~~~~~l~g~~lvv~r~~~~G~~~a~~d~CpHRga~-Ls~G~v~~-~~--~l~CpYHGW~Fd-~~G 162 (538)
.|..|+..+||++|....+.+.|++|+|+|...+|+++|++|+|||.+++ |++|.+++ .+ .|+||+|||+|| .+|
T Consensus 3 ~~~~v~~~~dl~~g~~~~v~v~g~~i~l~~~~~~g~~~A~~n~CpH~~~~~L~~G~~~~~~g~~~V~CP~H~~~Fdl~TG 82 (108)
T PRK09511 3 QWKDICKIDDILPGTGVCALVGDEQVAIFRPYHDEQVFAISNIDPFFQASVLSRGLIAEHQGELWVASPLKKQRFRLSDG 82 (108)
T ss_pred cceEeeEHhHcCCCceEEEEECCEEEEEEEECCCCEEEEEeCcCCCCCCcccCCceEccCCCeEEEECCCCCCEEECCCc
Confidence 49999999999999999999999999999953238999999999999985 99998842 22 499999999999 799
Q ss_pred CcccCCCCCCCCCCCCCccccccceeeEEEEcCeEEEc
Q 009277 163 DCKFIPQAPPDGPPVHTFEKACAAVYPSTVQHDIVWFW 200 (538)
Q Consensus 163 ~c~~iP~~~~~~~~~~~~~~~~l~~~pv~~~~G~IwV~ 200 (538)
+|...|. .+|++|||++++|.|||-
T Consensus 83 ~~~~~~~-------------~~l~typV~ve~g~V~v~ 107 (108)
T PRK09511 83 LCMEDEQ-------------FSVKHYDARVKDGVVQLR 107 (108)
T ss_pred ccCCCCC-------------ccEeeEeEEEECCEEEEe
Confidence 9987442 259999999999999984
No 33
>PF13806 Rieske_2: Rieske-like [2Fe-2S] domain; PDB: 2JO6_A 3C0D_A 3D89_A 2JZA_A.
Probab=99.83 E-value=1.8e-20 Score=162.96 Aligned_cols=99 Identities=29% Similarity=0.573 Sum_probs=89.4
Q ss_pred CeEEeeecCCCCCCCcEEEEECCEEEEEEEeCCCCeEEEEecCCCC-CCCCCCCCcccCC---CeEEeccCCcEEe-CCC
Q 009277 88 QWYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNENEWRVFADACPH-RLAPLSEGRIDQW---GRLQCVYHGWCFS-GSG 162 (538)
Q Consensus 88 ~W~~v~~~~dL~~g~~~~~~l~g~~lvv~r~~~~G~~~a~~d~CpH-Rga~Ls~G~v~~~---~~l~CpYHGW~Fd-~~G 162 (538)
+|.+|+.++||+++....+.+.|++|+|||.++ |+++|++|+||| ++++|++|.+++. ..|.||.|+|.|| .+|
T Consensus 1 ~W~~v~~~~~L~~~~~~~~~v~g~~Ialf~~~~-~~vyAi~n~Cph~~~~~Ls~G~i~~~~g~~~V~CPlH~~~f~L~tG 79 (104)
T PF13806_consen 1 SWVPVCPLDDLPPGEGRAVEVDGRQIALFRVRD-GEVYAIDNRCPHSQAGPLSDGLIGDGNGEPCVACPLHKWRFDLRTG 79 (104)
T ss_dssp SEEEEEETTTSCTTSEEEEEETTEEEEEEEEST-TEEEEEESBETTTTSSCGCGSEEEECTTEEEEEETTTTEEEETTTT
T ss_pred CeeEeccHHHCCCCCcEEEEECCeEEEEEEeCC-CCEEEEeccCCccCCcccceeEEccCCCCEEEECCCCCCeEECCCc
Confidence 599999999999999999999999999999965 899999999999 8999999998741 3899999999999 799
Q ss_pred CcccCCCCCCCCCCCCCccccccceeeEEEEcCeEEEc
Q 009277 163 DCKFIPQAPPDGPPVHTFEKACAAVYPSTVQHDIVWFW 200 (538)
Q Consensus 163 ~c~~iP~~~~~~~~~~~~~~~~l~~~pv~~~~G~IwV~ 200 (538)
+|+..| ..++++|||++++|.|||.
T Consensus 80 ~~~~~~-------------~~~l~~ypvrv~~g~V~V~ 104 (104)
T PF13806_consen 80 ECLEDP-------------DVSLRTYPVRVEDGQVYVE 104 (104)
T ss_dssp EESSEC-------------SEBSBEEEEEECTTEEEEE
T ss_pred CcCCCC-------------CCcEEeEEEEEECCEEEEC
Confidence 998743 2469999999999999983
No 34
>PF00355 Rieske: Rieske [2Fe-2S] domain; InterPro: IPR017941 There are multiple types of iron-sulphur clusters which are grouped into three main categories based on their atomic content: [2Fe-2S], [3Fe-4S], [4Fe-4S] (see PDOC00176 from PROSITEDOC), and other hybrid or mixed metal types. Two general types of [2Fe-2S] clusters are known and they differ in their coordinating residues. The ferredoxin-type [2Fe-2S] clusters are coordinated to the protein by four cysteine residues (see PDOC00175 from PROSITEDOC). The Rieske-type [2Fe-2S] cluster is coordinated to its protein by two cysteine residues and two histidine residues [, ]. The structure of several Rieske domains has been solved []. It contains three layers of antiparallel beta sheets forming two beta sandwiches. Both beta sandwiches share the central sheet 2. The metal-binding site is at the top of the beta sandwich formed by the sheets 2 and 3. The Fe1 iron of the Rieske cluster is coordinated by two cysteines while the other iron Fe2 is coordinated by two histidines. Two inorganic sulphide ions bridge the two iron ions forming a flat, rhombic cluster. Rieske-type iron-sulphur clusters are common to electron transfer chains of mitochondria and chloroplast and to non-haem iron oxygenase systems: The Rieske protein of the Ubiquinol-cytochrome c reductase (1.10.2.2 from EC) (also known as the bc1 complex or complex III), a complex of the electron transport chains of mitochondria and of some aerobic prokaryotes; it catalyses the oxidoreduction of ubiquinol and cytochrome c. The Rieske protein of chloroplastic plastoquinone-plastocyanin reductase (1.10.99.1 from EC) (also known as the b6f complex). It is functionally similar to the bc1 complex and catalyses the oxidoreduction of plastoquinol and cytochrome f. Bacterial naphthalene 1,2-dioxygenase subunit alpha, a component of the naphthalene dioxygenase (NDO) multicomponent enzyme system which catalyses the incorporation of both atoms of molecular oxygen into naphthalene to form cis-naphthalene dihydrodiol. Bacterial 3-phenylpropionate dioxygenase ferredoxin subunit. Bacterial toluene monoxygenase. Bacterial biphenyl dioxygenase. ; GO: 0016491 oxidoreductase activity, 0051537 2 iron, 2 sulfur cluster binding, 0055114 oxidation-reduction process; PDB: 2XRX_A 2XR8_O 2XSH_G 2XSO_I 2YFI_C 2YFL_A 2YFJ_K 1G8J_D 1G8K_D 1NYK_B ....
Probab=99.83 E-value=2.3e-20 Score=159.84 Aligned_cols=94 Identities=32% Similarity=0.594 Sum_probs=77.7
Q ss_pred CeEEeeecCCCCC-CCcEEEEECCEEEEEEEeCCCCeEEEEecCCCCCCCCCCCCc-ccCCCeEEeccCCcEEeCC-CCc
Q 009277 88 QWYPLMPVCDLDK-RVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGR-IDQWGRLQCVYHGWCFSGS-GDC 164 (538)
Q Consensus 88 ~W~~v~~~~dL~~-g~~~~~~l~g~~lvv~r~~~~G~~~a~~d~CpHRga~Ls~G~-v~~~~~l~CpYHGW~Fd~~-G~c 164 (538)
+|++|+.++||++ +....+.+ |...+++++.+ |+++|++|+|||+|++|+.|. ...++.|+||||||+||.+ |+|
T Consensus 1 ~W~~v~~~~el~~~~~~~~~~~-~~~~v~~~~~~-g~~~A~~~~CpH~g~~l~~~~~~~~~~~i~Cp~Hg~~Fd~~tG~~ 78 (97)
T PF00355_consen 1 QWVPVCRSSELPEPGDVKRVDV-GGKLVLVRRSD-GEIYAFSNRCPHQGCPLSEGPFSEDGGVIVCPCHGWRFDLDTGEC 78 (97)
T ss_dssp SEEEEEEGGGSHSTTEEEEEEE-TTEEEEEEETT-TEEEEEESB-TTTSBBGGCSSEETTTTEEEETTTTEEEETTTSBE
T ss_pred CEEEeeEHHHCCCCCCEEEEEc-CCcEEEEEeCC-CCEEEEEccCCccceeEcceecccccCEEEeCCcCCEEeCCCceE
Confidence 6999999999997 77888888 55555556665 899999999999999999995 3334689999999999965 999
Q ss_pred ccCCCCCCCCCCCCCccccccceeeEEEEcC
Q 009277 165 KFIPQAPPDGPPVHTFEKACAAVYPSTVQHD 195 (538)
Q Consensus 165 ~~iP~~~~~~~~~~~~~~~~l~~~pv~~~~G 195 (538)
+..|... +++.||++++++
T Consensus 79 ~~~p~~~------------~l~~~~v~ve~~ 97 (97)
T PF00355_consen 79 VGGPAPR------------PLPLYPVKVEGD 97 (97)
T ss_dssp EESTTCS------------BSTEEEEEEETT
T ss_pred ecCCCCC------------CcCCCCeEEeCC
Confidence 9998632 589999999874
No 35
>COG2146 {NirD} Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases [Inorganic ion transport and metabolism / General function prediction only]
Probab=99.81 E-value=2.3e-19 Score=156.53 Aligned_cols=102 Identities=25% Similarity=0.351 Sum_probs=88.6
Q ss_pred CCeEEeeecCCCCCCCcEEEEECCEEEEEEEeCCCCeEEEEecCCCCCCCCCCCCcccCCCeEEeccCCcEEe-CCCCcc
Q 009277 87 SQWYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCVYHGWCFS-GSGDCK 165 (538)
Q Consensus 87 ~~W~~v~~~~dL~~g~~~~~~l~g~~lvv~r~~~~G~~~a~~d~CpHRga~Ls~G~v~~~~~l~CpYHGW~Fd-~~G~c~ 165 (538)
..|+.++.++||+++..+.+.+.+..+++++..+ |+++|++|+|||.+++|++|.+.++..|+||.|+|.|| .||+|+
T Consensus 3 ~~w~~~c~~~dl~~~~~~~v~~~~~~~~~~~~~~-g~v~A~~n~CpH~~~~l~~g~v~~~~~i~Cp~H~a~Fdl~tG~~~ 81 (106)
T COG2146 3 MNWIRICKVDDLPEGGGVRVLVGGGRFALVVRAD-GEVFAIDNRCPHAGAPLSRGLVEGDETVVCPLHGARFDLRTGECL 81 (106)
T ss_pred CceEEEEehHhcCCCCceEEEecCCEEEEEEecC-CEEEEEeCcCCCCCCcccccEeCCCCEEECCccCCEEEcCCCcee
Confidence 5799999999999999999988553566666665 89999999999999999999998645699999999999 799999
Q ss_pred cCCCCCCCCCCCCCccccccceeeEEEEcCeEEEcc
Q 009277 166 FIPQAPPDGPPVHTFEKACAAVYPSTVQHDIVWFWP 201 (538)
Q Consensus 166 ~iP~~~~~~~~~~~~~~~~l~~~pv~~~~G~IwV~~ 201 (538)
..|+.. .|++||+++.+|.|||.+
T Consensus 82 ~~p~~~------------~l~~y~vrve~g~v~v~~ 105 (106)
T COG2146 82 EPPAGK------------TLKTYPVRVEGGRVFVDL 105 (106)
T ss_pred cCCCCC------------ceeEEeEEEECCEEEEec
Confidence 987521 199999999999999975
No 36
>cd03467 Rieske Rieske domain; a [2Fe-2S] cluster binding domain commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes. The Rieske domain can be divided into two subdomains, with an incomplete six-stranded, antiparallel beta-barrel at one end, and an iron-sulfur cluster binding subdomain at the other. The Rieske iron-sulfur center contains a [2Fe-2S] cluster, which is involved in electron transfer, and is liganded to two histidine and two cysteine residues present in conserved sequences called Rieske motifs. In RO systems, the N-terminal Rieske domain of the alpha subunit acts as an electron shuttle that accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron in the alpha subunit C-terminal domain to be used for catalysis.
Probab=99.80 E-value=2.8e-19 Score=153.58 Aligned_cols=92 Identities=27% Similarity=0.357 Sum_probs=83.6
Q ss_pred eEEeeecCCCCCCCcEEEEECCEEEEEEEeCCCCeEEEEecCCCCCCCCCCCCcccCCCeEEeccCCcEEeC-CCCcccC
Q 009277 89 WYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCVYHGWCFSG-SGDCKFI 167 (538)
Q Consensus 89 W~~v~~~~dL~~g~~~~~~l~g~~lvv~r~~~~G~~~a~~d~CpHRga~Ls~G~v~~~~~l~CpYHGW~Fd~-~G~c~~i 167 (538)
|++++..++|+++....+.+.|.+++|+|+.+ |+++|++|.|||++++|+.|.+. ++.|+||+|||+||. ||+|+..
T Consensus 1 w~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~a~~~~CpH~g~~l~~~~~~-~~~i~Cp~H~~~f~~~~G~~~~~ 78 (98)
T cd03467 1 WVVVGALSELPPGGGRVVVVGGGPVVVVRREG-GEVYALSNRCTHQGCPLSEGEGE-DGCIVCPCHGSRFDLRTGEVVSG 78 (98)
T ss_pred CEEeeeccccCCCceEEEEECCeEEEEEEeCC-CEEEEEcCcCCCCCccCCcCccC-CCEEEeCCCCCEEeCCCccCcCC
Confidence 89999999999999999999999999999866 79999999999999999999865 479999999999996 9999988
Q ss_pred CCCCCCCCCCCCccccccceeeEEEEc
Q 009277 168 PQAPPDGPPVHTFEKACAAVYPSTVQH 194 (538)
Q Consensus 168 P~~~~~~~~~~~~~~~~l~~~pv~~~~ 194 (538)
|. ...+++||+++.+
T Consensus 79 p~------------~~~l~~~~v~~~~ 93 (98)
T cd03467 79 PA------------PRPLPKYPVKVEG 93 (98)
T ss_pred CC------------CCCcCEEEEEEeC
Confidence 74 2358999999994
No 37
>cd03477 Rieske_YhfW_C YhfW family, C-terminal Rieske domain; YhfW is a protein of unknown function with an N-terminal DadA-like (glycine/D-amino acid dehydrogenase) domain and a C-terminal Rieske domain. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. It is commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes. YhfW is found in bacteria, some eukaryotes and archaea.
Probab=99.79 E-value=3.9e-19 Score=150.97 Aligned_cols=88 Identities=16% Similarity=0.152 Sum_probs=77.4
Q ss_pred eeecCCCCCCCcEEEEECCEEEEEEEeCCCCeEEEEecCCCCCCCCCCCCcccCCCeEEeccCCcEEeCCCCcccCCCCC
Q 009277 92 LMPVCDLDKRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCVYHGWCFSGSGDCKFIPQAP 171 (538)
Q Consensus 92 v~~~~dL~~g~~~~~~l~g~~lvv~r~~~~G~~~a~~d~CpHRga~Ls~G~v~~~~~l~CpYHGW~Fd~~G~c~~iP~~~ 171 (538)
++.++||++|....+.+.|++|+|+|+.+ |+++||.|+|||+|++|+.|.. ++.|+||||||+||.+|+|+..|..
T Consensus 2 ~~~~~dl~~g~~~~~~~~g~~v~v~r~~~-g~~~A~~~~CpH~g~~l~~g~~--~~~i~CP~Hg~~Fd~~G~~~~~Pa~- 77 (91)
T cd03477 2 ITDIEDLAPGEGGVVNIGGKRLAVYRDED-GVLHTVSATCTHLGCIVHWNDA--EKSWDCPCHGSRFSYDGEVIEGPAV- 77 (91)
T ss_pred ccchhhcCCCCeEEEEECCEEEEEEECCC-CCEEEEcCcCCCCCCCCcccCC--CCEEECCCCCCEECCCCcEeeCCCC-
Confidence 57889999999999999999999999876 8999999999999999998865 3589999999999999999998853
Q ss_pred CCCCCCCCccccccceeeEEEEc
Q 009277 172 PDGPPVHTFEKACAAVYPSTVQH 194 (538)
Q Consensus 172 ~~~~~~~~~~~~~l~~~pv~~~~ 194 (538)
..+++|+++-.+
T Consensus 78 -----------~~l~~y~v~~~~ 89 (91)
T cd03477 78 -----------SGLKPADDAPID 89 (91)
T ss_pred -----------CCCCeeEeeccc
Confidence 248899987544
No 38
>cd08878 RHO_alpha_C_DMO-like C-terminal catalytic domain of the oxygenase alpha subunit of dicamba O-demethylase and related aromatic ring hydroxylating dioxygenases. C-terminal catalytic domain of the oxygenase alpha subunit of Stenotrophomonas maltophilia dicamba O-demethylase (DMO) and related Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs, also known as aromatic ring hydroxylating dioxygenases). RHOs utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components an
Probab=99.77 E-value=5.9e-18 Score=160.82 Aligned_cols=177 Identities=21% Similarity=0.333 Sum_probs=114.9
Q ss_pred eeeEEeechHHHHHhcCCCCCCccccccccccCC------CceEEeccCCeE-EEEEEeccC--CCCCCCCc-ccceeEE
Q 009277 232 GNRDIPYGYEVLLENLMDPAHVPYAHYGLMRTRK------PKVKLDREGGRP-VEMSVNKID--INGFIGKQ-EWGSSKF 301 (538)
Q Consensus 232 ~~~~~~~~w~~l~EN~lD~~H~~~~H~~~~~~~~------p~~~~~~~~~~~-~~~~~~~~~--~~Gf~~~~-~~~~~~f 301 (538)
+.+++++||+.++||+||++|++|+|+++++... +..++...+.+. ......... ..++.+.. .+....|
T Consensus 4 ~~~~~~~n~~~~~EN~~D~~H~~fvH~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (196)
T cd08878 4 GYRHIDCNWLQVVENLMDPSHVSFVHRSSIGRDAADLPSGPPKEVEEVPRGVTYRRWREDEDPPPFGFEGPVDRWRVIEF 83 (196)
T ss_pred CcEEecCCcEEEehhCccccchhhhChhhhCccccccccCCCceEEEeCCEEEEEEEecCCCCCCCCCCCCccEEEEEEE
Confidence 3578899999999999999999999999998642 133333332221 111111111 11222111 2345679
Q ss_pred ecceEEEEeeccccccccCCCcccccccccccccEEEEEEEEECCCCeEEEEEEeecCcccc-----ccccchhHHHHHh
Q 009277 302 LAPCIFFAYTDLMKDQENGSASSAGAEKKLEQQRAALIFICVPVSPGHSRLIWAFPRNFQTW-----IDKVVPRWIFHIG 376 (538)
Q Consensus 302 ~~P~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~Pv~pg~tr~~~~~~r~~~~~-----~~~~~prw~~h~~ 376 (538)
++|++++......+.+ . ...+....++++++|+++++|+++|.+.+++... ...+.+.+ ...
T Consensus 84 ~~P~~~~~~~~~~~~~----------~-~~~~~~~~~~~~~tPid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 150 (196)
T cd08878 84 LLPNVLLIDPGVAPAG----------T-REQGVRMRVTHWITPIDETTTHYFWFFVRNFAPDEEKKDDEELTETL--RSG 150 (196)
T ss_pred ECCEEEEEecccccCC----------c-CCCcceEEEEEEEccCCCCeEEEEEEeccCCCCCccccCCHHHHHHH--HHH
Confidence 9999887654321110 0 1123456778999999999999999988887543 11222322 235
Q ss_pred hhHHHhhhHHHHHHHHhhhhccCCcccccccccCCccchHHHHHHHHHHHH
Q 009277 377 QNLILDSDLYLLHVEERKIMDVGPANWQKACFVPTKADALVVGFRRWLKKY 427 (538)
Q Consensus 377 ~~~Vl~eD~~ile~qq~~l~~~g~~~w~~~~~~p~~aD~~v~~fRrWl~~~ 427 (538)
...|++||+.++|.||+.+... +.+.. ...+|+++++||||++++
T Consensus 151 ~~~v~~eD~~i~e~q~~~~~~~----~~~~~--l~~~D~~~~~~Rr~l~~~ 195 (196)
T cd08878 151 LSGAFNEDKEAVEAQQRIIDRD----PTREH--LGLSDKGIVRFRRLLRRL 195 (196)
T ss_pred hhhhchhHHHHHHHHHHHHhcC----Ccccc--cccccHHHHHHHHHHHHh
Confidence 6789999999999999988653 23333 344899999999999986
No 39
>cd03476 Rieske_ArOX_small Small subunit of Arsenite oxidase (ArOX) family, Rieske domain; ArOX is a molybdenum/iron protein involved in the detoxification of arsenic, oxidizing it to arsenate. It consists of two subunits, a large subunit similar to members of the DMSO reductase family of molybdenum enzymes and a small subunit with a Rieske-type [2Fe-2S] cluster. The large subunit of ArOX contains the molybdenum site at which the oxidation of arsenite occurs. The small subunit contains a domain homologous to the Rieske domains of the cytochrome bc(1) and cytochrome b6f complexes as well as naphthalene 1,2-dioxygenase. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer.
Probab=99.70 E-value=6.4e-17 Score=145.34 Aligned_cols=97 Identities=13% Similarity=0.072 Sum_probs=83.0
Q ss_pred EEeeecCCCCCCCcEEEEECC--EEEEEEEeC--------CCCeEEEEecCCCCCCCCCCCCcccCCCeEEeccCCcEEe
Q 009277 90 YPLMPVCDLDKRVPHAKKVLG--LDVVVWWDR--------NENEWRVFADACPHRLAPLSEGRIDQWGRLQCVYHGWCFS 159 (538)
Q Consensus 90 ~~v~~~~dL~~g~~~~~~l~g--~~lvv~r~~--------~~G~~~a~~d~CpHRga~Ls~G~v~~~~~l~CpYHGW~Fd 159 (538)
+.|+.++||++|+.+.+++.| ++++|+|.. .+|+++|++|+|||++++|+.|. + ++.|+||+|||+||
T Consensus 4 ~~v~~~~~l~~g~~~~~~~~~~~~~i~v~r~~~~~~~~~~~~g~~~A~~~~CpH~g~~L~~g~-~-~~~v~CP~Hg~~Fd 81 (126)
T cd03476 4 VKVANLSQLSPGQPVTFNYPDESSPCVLVKLGVPVPGGVGPDNDIVAFSALCTHMGCPLTYDP-S-NKTFVCPCHFSQFD 81 (126)
T ss_pred eEEeeHHHCCCCCeEEEEcCCCCCcEEEEECCccccCccccCCEEEEEeCcCCCCCccccccc-c-CCEEEccCcCCEEe
Confidence 358899999999999999887 899999973 13799999999999999999986 3 46899999999999
Q ss_pred C--CCCcccCCCCCCCCCCCCCccccccceeeEEEE--cCeEEEc
Q 009277 160 G--SGDCKFIPQAPPDGPPVHTFEKACAAVYPSTVQ--HDIVWFW 200 (538)
Q Consensus 160 ~--~G~c~~iP~~~~~~~~~~~~~~~~l~~~pv~~~--~G~IwV~ 200 (538)
. +|+|+..|. ...|+.||++++ +|.|||-
T Consensus 82 l~tgG~~~~gPa------------~~~L~~ypv~ve~~~g~V~~~ 114 (126)
T cd03476 82 PARGGQMVSGQA------------TQNLPQIVLEYDEASGDIYAV 114 (126)
T ss_pred CCCCCeEEcCCC------------CCCCCeEEEEEECCCCEEEEE
Confidence 5 579998763 235999999999 9999984
No 40
>PF08417 PaO: Pheophorbide a oxygenase; InterPro: IPR013626 This domain is found in bacterial and plant proteins to the C terminus of a Rieske 2Fe-2S domain (IPR005806 from INTERPRO). One of the proteins the domain is found in is Pheophorbide a oxygenase (PaO) which seems to be a key regulator of chlorophyll catabolism. Arabidopsis PaO (AtPaO) is a Rieske-type 2Fe-2S enzyme that is identical to Arabidopsis accelerated cell death 1 and homologous to lethal leaf spot 1 (LLS1) of maize [], in which the domain described here is also found. ; GO: 0010277 chlorophyllide a oxygenase [overall] activity, 0055114 oxidation-reduction process
Probab=99.69 E-value=6.3e-17 Score=137.73 Aligned_cols=92 Identities=48% Similarity=0.995 Sum_probs=78.2
Q ss_pred EecceEEEEeeccccccccCCCcccccccccccccEEEEEEEEECCCCeEEEEEEeecCccccccccchhHHHHHhhhHH
Q 009277 301 FLAPCIFFAYTDLMKDQENGSASSAGAEKKLEQQRAALIFICVPVSPGHSRLIWAFPRNFQTWIDKVVPRWIFHIGQNLI 380 (538)
Q Consensus 301 f~~P~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~Pv~pg~tr~~~~~~r~~~~~~~~~~prw~~h~~~~~V 380 (538)
|++||+++..... ....+.+...+++++|+|++||+||+++++++||..++.+++|+|+.|+.+++|
T Consensus 1 F~pPc~v~~~~~~-------------~~~~~~~~~~~~~~~~vP~~pG~~Rli~r~~~~f~~~~~k~~P~wl~H~~~n~V 67 (92)
T PF08417_consen 1 FIPPCLVRSTEEG-------------PKKKSCGKRLHQVFYCVPTGPGRCRLIWRFPRNFPAWIFKLIPRWLSHLTSNKV 67 (92)
T ss_pred CCCCEEEEEeccc-------------cccCCCCCEEEEEEEEEECCCCeEEEEEEehhhhhhHHhhcCCHHHHHHhhCcc
Confidence 7899999865100 011234677889999999999999999999999987888899999999999999
Q ss_pred HhhhHHHHHHHHhhhhccCCccccc
Q 009277 381 LDSDLYLLHVEERKIMDVGPANWQK 405 (538)
Q Consensus 381 l~eD~~ile~qq~~l~~~g~~~w~~ 405 (538)
+|||+.+||.||+.+++.|.++|++
T Consensus 68 Ld~Dl~lLh~Qe~~l~~~g~~~W~~ 92 (92)
T PF08417_consen 68 LDQDLYLLHGQERRLAREGADNWQK 92 (92)
T ss_pred cHHHHHHHHHHHHHHHHhccCcCCC
Confidence 9999999999999999888788864
No 41
>cd03471 Rieske_cytochrome_b6f Iron-sulfur protein (ISP) component of the b6f complex family, Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. The cytochrome b6f complex from Mastigocladus laminosus, a thermophilic cyanobacterium, contains four large subunits, including cytochrome f, cytochrome b6, the Rieske ISP, and subunit IV; as well as four small hydrophobic subunits, PetG, PetL, PetM, and PetN. Rieske ISP, one of the large subunits of the cytochrome bc-type complexes, is involved in respiratory and photosynthetic electron transfer. The core of the chloroplast b6f complex is similar to the analogous respiratory cytochrome bc(1) complex, but the domain arrangement outside the core and the complement of prosthetic groups are strikingly different.
Probab=99.65 E-value=8.2e-16 Score=137.42 Aligned_cols=89 Identities=15% Similarity=0.124 Sum_probs=70.4
Q ss_pred CCCcEEEE-E-CCEEEEEEEeCCCCeE--EEEecCCCCCCCCCCCCcccCCCeEEeccCCcEEeCCCCcccCCCCCCCCC
Q 009277 100 KRVPHAKK-V-LGLDVVVWWDRNENEW--RVFADACPHRLAPLSEGRIDQWGRLQCVYHGWCFSGSGDCKFIPQAPPDGP 175 (538)
Q Consensus 100 ~g~~~~~~-l-~g~~lvv~r~~~~G~~--~a~~d~CpHRga~Ls~G~v~~~~~l~CpYHGW~Fd~~G~c~~iP~~~~~~~ 175 (538)
+|++..++ + .+..|+|++ .+ |++ +|++|+|||+|++|+.|.. ++.|+||+|||+||.+|+++..|.
T Consensus 22 ~~~~~~~~~~~~~~~Ilv~~-~d-g~i~~~A~~~~CpH~G~~l~~~~~--~~~i~CP~Hg~~Fd~tG~~~~gPa------ 91 (126)
T cd03471 22 PGDRSLVQGLKGDPTYLIVE-ED-KTIANYGINAVCTHLGCVVPWNAA--ENKFKCPCHGSQYDATGKVVRGPA------ 91 (126)
T ss_pred CCCeEEEEEecCCeEEEEEe-CC-CeEEEEEecCCCcCCCCCcCccCC--CCEEEcCCCCCEECCCCCEecCCC------
Confidence 67777665 4 445555544 45 777 7999999999999998754 368999999999999999998763
Q ss_pred CCCCccccccceeeEEEEcCeEEEccCCC
Q 009277 176 PVHTFEKACAAVYPSTVQHDIVWFWPNIA 204 (538)
Q Consensus 176 ~~~~~~~~~l~~~pv~~~~G~IwV~~~~~ 204 (538)
...|+.|+|++++|.|||.+-.+
T Consensus 92 ------~~~L~~y~V~vedg~I~V~~~~~ 114 (126)
T cd03471 92 ------PLSLALVHATVDDDKVVLSPWTE 114 (126)
T ss_pred ------CCCCceEeEEEECCEEEEEECcc
Confidence 23599999999999999976543
No 42
>cd00680 RHO_alpha_C C-terminal catalytic domain of the oxygenase alpha subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases. C-terminal catalytic domain of the oxygenase alpha subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenase (RHO) family. RHOs, also known as aromatic ring hydroxylating dioxygenases, utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC), and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components and have an N-terminal domain, which binds a Rieske-like 2Fe-2S cluster, and a C-te
Probab=99.65 E-value=1.6e-15 Score=143.05 Aligned_cols=170 Identities=16% Similarity=0.160 Sum_probs=105.0
Q ss_pred eeeEEeechHHHHHhcCCCCCCccccccccccCC-------CceEEecc----CCeEEEEEEeccCCCC-C-CCCcccce
Q 009277 232 GNRDIPYGYEVLLENLMDPAHVPYAHYGLMRTRK-------PKVKLDRE----GGRPVEMSVNKIDING-F-IGKQEWGS 298 (538)
Q Consensus 232 ~~~~~~~~w~~l~EN~lD~~H~~~~H~~~~~~~~-------p~~~~~~~----~~~~~~~~~~~~~~~G-f-~~~~~~~~ 298 (538)
...++++|||+++||++|+||++++|+++++... +....... ...............+ . ........
T Consensus 3 ~~~~~~~NWK~~~En~~E~YH~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (188)
T cd00680 3 YEYEVDCNWKLAVENFLECYHVPTVHPDTLATGLPLPLLFGDHYRVDDTGEGPGEGLSRHWGDGKGPQSALPGLKPGGYL 82 (188)
T ss_pred eEEEeccCceEehhhccccccccccChhhhccccccCcccCCceEEEeccCCCCChhhcccchhhhcccccccccccCeE
Confidence 3578999999999999999999999999986421 11111000 0000000000000000 0 00112234
Q ss_pred eEEecceEEEEeeccccccccCCCcccccccccccccEEEEEEEEECCCCeEEEEEEeecCccccccccchhHHHHH--h
Q 009277 299 SKFLAPCIFFAYTDLMKDQENGSASSAGAEKKLEQQRAALIFICVPVSPGHSRLIWAFPRNFQTWIDKVVPRWIFHI--G 376 (538)
Q Consensus 299 ~~f~~P~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~Pv~pg~tr~~~~~~r~~~~~~~~~~prw~~h~--~ 376 (538)
..+++|++++.. .+..+.++.++|+++++|++.+.+.........+...+++... .
T Consensus 83 ~~~~fPn~~~~~----------------------~~~~~~~~~~~P~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (188)
T cd00680 83 YLYLFPNLMIGL----------------------YPDSLQVQQFVPIGPNKTRLEVRLYRPKDEDAREEFDAELESLAGI 140 (188)
T ss_pred EEEECCcEeeee----------------------cCCEEEEEEEEecCCCcEEEEEEEEEecccccchhhHHHHHHhHHH
Confidence 567899988742 2256678889999999999988765443221111223333322 4
Q ss_pred hhHHHhhhHHHHHHHHhhhhccCCcccccccccCCccchHHHHHHHHHHHHH
Q 009277 377 QNLILDSDLYLLHVEERKIMDVGPANWQKACFVPTKADALVVGFRRWLKKYA 428 (538)
Q Consensus 377 ~~~Vl~eD~~ile~qq~~l~~~g~~~w~~~~~~p~~aD~~v~~fRrWl~~~~ 428 (538)
...|++||..+++.||+++.+.++ ..+.+. ..+..+..|++|+++++
T Consensus 141 ~~~v~~ED~~~~e~~Q~gl~s~~~---~~~~l~--~~E~~i~~f~~~~~~~~ 187 (188)
T cd00680 141 LRQVLDEDIELCERIQRGLRSGAF---RGGPLS--PLEEGIRHFHRWLRRAL 187 (188)
T ss_pred HHHHHHHHHHHHHHHhccccCCcC---CCCCCC--cccccHHHHHHHHHHhc
Confidence 678999999999999999988754 334332 34789999999999875
No 43
>cd03473 Rieske_CMP_Neu5Ac_hydrolase_N Cytidine monophosphate-N-acetylneuraminic acid (CMP Neu5Ac) hydroxylase family, N-terminal Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. CMP Neu5Ac hydroxylase is the key enzyme for the synthesis of N-glycolylneuraminic acid (NeuGc) from N-acetylneuraminic acid (Neu5Ac), NeuGc and Neu5Ac are members of a family of cell surface sugars called sialic acids. All mammals except humans have both NeuGc variants on their cell surfaces. In humans, the gene encoding CMP Neu5Ac hydroxylase has a mutation within its coding region that abolishes NeuGc production.
Probab=99.62 E-value=1.4e-15 Score=131.25 Aligned_cols=72 Identities=15% Similarity=0.353 Sum_probs=64.5
Q ss_pred cCCCCCCCcEEEEE-CCEEEEEEEeCCCCeEEEEecCCCCCCCCCCCC--cccCCCeEEeccCCcEEe-CCCCcccCCC
Q 009277 95 VCDLDKRVPHAKKV-LGLDVVVWWDRNENEWRVFADACPHRLAPLSEG--RIDQWGRLQCVYHGWCFS-GSGDCKFIPQ 169 (538)
Q Consensus 95 ~~dL~~g~~~~~~l-~g~~lvv~r~~~~G~~~a~~d~CpHRga~Ls~G--~v~~~~~l~CpYHGW~Fd-~~G~c~~iP~ 169 (538)
+.||++|..+.+.+ .|++|+|+|. + |+++|++|+|||++++|+.| .++ ++.|+||+|||+|| .+|+++.-|.
T Consensus 14 l~eL~~G~~~~v~v~~g~~I~V~~~-~-G~~~A~~n~CpH~g~pL~~g~g~~~-g~~V~CP~Hg~~FDLrTG~~~~~p~ 89 (107)
T cd03473 14 VANLKEGINFFRNKEDGKKYIIYKS-K-SELKACKNQCKHQGGLFIKDIEDLD-GRTVRCTKHNWKLDVSTMKYVNPPD 89 (107)
T ss_pred HhcCCCCceEEEEecCCcEEEEEEE-C-CEEEEEcCCCCCCCccccCCcceEe-CCEEEeCCCCCEEEcCCCCCccCCc
Confidence 47899999999999 9999999986 4 89999999999999999994 576 47899999999999 7999998664
No 44
>cd08885 RHO_alpha_C_1 C-terminal catalytic domain of the oxygenase alpha subunit of an uncharacterized subgroup of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases. C-terminal catalytic domain of the oxygenase alpha subunit of a functionally uncharacterized subgroup of the Rieske-type non-heme iron aromatic ring-hydroxylating oxygenase (RHO) family. RHOs, also known as aromatic ring hydroxylating dioxygenases, utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components and
Probab=99.59 E-value=2.7e-14 Score=136.83 Aligned_cols=170 Identities=16% Similarity=0.149 Sum_probs=103.5
Q ss_pred eeeEEeechHHHHHhcCCCCCCccccccccccCCC--ceEE-eccCCeEEEEEEec----c------CCCCCCCCc-ccc
Q 009277 232 GNRDIPYGYEVLLENLMDPAHVPYAHYGLMRTRKP--KVKL-DREGGRPVEMSVNK----I------DINGFIGKQ-EWG 297 (538)
Q Consensus 232 ~~~~~~~~w~~l~EN~lD~~H~~~~H~~~~~~~~p--~~~~-~~~~~~~~~~~~~~----~------~~~Gf~~~~-~~~ 297 (538)
...++++|||+++||++|+||++.+|+++++...+ .... +..+.......... . ...+..... ...
T Consensus 4 ~~~~~~~NWK~~~en~~E~YH~~~~H~~t~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (190)
T cd08885 4 EEEVWDTNWKVLAENFMEGYHLPGLHPGTLHPFMPAELSYFRPEDGRGFTRHKGTKHFNETIEPAHPPNPGLTEEWRRRL 83 (190)
T ss_pred eeeeccCCchhhHhhcCccccccccccchhhccCchhhcccccCCCcceeeeecccccccCccccCCCCCCCChhhhcce
Confidence 35688999999999999999999999998864221 1111 11111111111110 0 001111111 123
Q ss_pred eeEEecceEEEEeeccccccccCCCcccccccccccccEEEEEEEEECCCCeEEEEEEeecCccccccccchhHHH--HH
Q 009277 298 SSKFLAPCIFFAYTDLMKDQENGSASSAGAEKKLEQQRAALIFICVPVSPGHSRLIWAFPRNFQTWIDKVVPRWIF--HI 375 (538)
Q Consensus 298 ~~~f~~P~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~Pv~pg~tr~~~~~~r~~~~~~~~~~prw~~--h~ 375 (538)
...+++||+++.. .+..+.++.++|+++++|++.+.+........+.....|.. ..
T Consensus 84 ~~~~iFPN~~i~~----------------------~~~~~~~~~~~P~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (190)
T cd08885 84 VLFAIFPTHLLAL----------------------TPDYVWWLSLLPEGAGRVRVRWGVLVAPEAADDPEAAEYIAELKA 141 (190)
T ss_pred EEEEECCcEEEEe----------------------cCCeEEEEEEEecCCCeEEEEEEEEEcchhcccchhHHHHHHHHH
Confidence 4456899988742 12345677789999999999765432211110001112221 12
Q ss_pred hhhHHHhhhHHHHHHHHhhhhccCCcccccccccCCccchHHHHHHHHHHHHH
Q 009277 376 GQNLILDSDLYLLHVEERKIMDVGPANWQKACFVPTKADALVVGFRRWLKKYA 428 (538)
Q Consensus 376 ~~~~Vl~eD~~ile~qq~~l~~~g~~~w~~~~~~p~~aD~~v~~fRrWl~~~~ 428 (538)
....|++||..+++.+|+++.+.++ ..+.+.+ .|..+..|++|+++.+
T Consensus 142 ~~~~v~~ED~~~~e~~Q~Gl~S~~~---~~g~l~~--~E~~i~~fh~~l~~~l 189 (190)
T cd08885 142 LLDAINDEDRLVVEGVQRGLGSRFA---VPGRLSH--LERPIWQFQRYLASRL 189 (190)
T ss_pred HHHHHHHHHHHHHHHhcccccCCCC---CCCCCCc--ccccHHHHHHHHHHHh
Confidence 3467999999999999999998764 4455544 5999999999999875
No 45
>TIGR02694 arsenite_ox_S arsenite oxidase, small subunit. This model represents the small subunit of an arsenite oxidase complex. It is a Rieske protein and appears to rely on the Tat (twin-arginine translocation) system to cross the membrane. Although this enzyme could run in the direction of arsenate reduction to arsenite in principle, the relevant biological function is arsenite oxidation for energy metabolism, not arsenic resistance. Homologs to both large (TIGR02693) and small subunits that score in the gray zone between the set trusted and noise bit score cutoffs for the respective models are found in Aeropyrum pernix K1 and in Sulfolobus tokodaii str. 7.
Probab=99.59 E-value=6.1e-15 Score=132.90 Aligned_cols=95 Identities=15% Similarity=0.138 Sum_probs=78.2
Q ss_pred EEeeecCCCCCCCcEEEEECC--EEEEEEEeC--------CCCeEEEEecCCCCCCCCCCCCcccCCCeEEeccCCcEEe
Q 009277 90 YPLMPVCDLDKRVPHAKKVLG--LDVVVWWDR--------NENEWRVFADACPHRLAPLSEGRIDQWGRLQCVYHGWCFS 159 (538)
Q Consensus 90 ~~v~~~~dL~~g~~~~~~l~g--~~lvv~r~~--------~~G~~~a~~d~CpHRga~Ls~G~v~~~~~l~CpYHGW~Fd 159 (538)
+.|+.++||++|+++.+++.+ .+++++|.. .+|+++|++|.|||.+++|+.|. + ++.|.||.|||+||
T Consensus 7 ~~v~~~~dl~~g~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~G~~~A~~~~CpH~g~~L~~~~-~-~~~i~CP~Hga~Fd 84 (129)
T TIGR02694 7 NRVANISELKLNEPLDFNYPDASSPGVLLKLGTPVEGGVGPDGDIVAFSTLCTHMGCPVSYSA-D-NKTFNCPCHFSVFD 84 (129)
T ss_pred eEEEeHHHCCCCCCEEEecCCCCCCEEEEecCCcccCccccCCEEEEEeCcCCCCCccccccc-C-CCEEEcCCCCCEEC
Confidence 358899999999999999865 477888731 24899999999999999999875 3 46899999999999
Q ss_pred CC--CCcccCCCCCCCCCCCCCccccccceeeEEEE-cCeEE
Q 009277 160 GS--GDCKFIPQAPPDGPPVHTFEKACAAVYPSTVQ-HDIVW 198 (538)
Q Consensus 160 ~~--G~c~~iP~~~~~~~~~~~~~~~~l~~~pv~~~-~G~Iw 198 (538)
.+ |+|+..|. ..+|.+||+++. +|.||
T Consensus 85 l~tgG~~~~gP~------------~~~L~~y~v~v~~~G~V~ 114 (129)
T TIGR02694 85 PEKGGQQVWGQA------------TQNLPQIVLRVADNGDIF 114 (129)
T ss_pred CCCCCcEECCCC------------CCCCCeeEEEEECCCeEE
Confidence 64 69987663 235999999997 58888
No 46
>cd08883 RHO_alpha_C_CMO-like C-terminal catalytic domain of plant choline monooxygenase (CMO) and related aromatic ring hydroxylating dioxygenases. C-terminal catalytic domain of plant choline monooxygenase and related Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs, also known as aromatic ring hydroxylating dioxygenases). RHOs utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components and have an N-terminal domain, which binds a Rieske-like 2Fe-2S cluster, and a C-
Probab=99.57 E-value=6.4e-14 Score=132.95 Aligned_cols=166 Identities=15% Similarity=0.218 Sum_probs=102.1
Q ss_pred eeEEeechHHHHHhcCCCCCCccccccccccCC-CceEEeccCCeEEEEEEec-cCCCCCCCCc-ccceeEEecceEEEE
Q 009277 233 NRDIPYGYEVLLENLMDPAHVPYAHYGLMRTRK-PKVKLDREGGRPVEMSVNK-IDINGFIGKQ-EWGSSKFLAPCIFFA 309 (538)
Q Consensus 233 ~~~~~~~w~~l~EN~lD~~H~~~~H~~~~~~~~-p~~~~~~~~~~~~~~~~~~-~~~~Gf~~~~-~~~~~~f~~P~~~~~ 309 (538)
..++++|||+++||++|+||++++|++++.... .....+..+ ......... ....+..... ......+++|++++.
T Consensus 5 ~~~~~~NWK~~~en~~e~yH~~~~H~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~lFPN~~i~ 83 (175)
T cd08883 5 EYVIECNWKVYVDNYLEGYHVPFAHPGLAAVLDYATYRTELFE-YVSLQSAPARAEEGSFFYRLGNAALYAWIYPNLMLN 83 (175)
T ss_pred EeeeecCceEEehhcCCcccCcccchhHHhhcccCceEEEEcC-cEEEEEecccCCCCccccccCcCeEEEEECCCEeee
Confidence 467899999999999999999999999985422 122122111 111111110 0111111111 123345689999874
Q ss_pred eeccccccccCCCcccccccccccccEEEEEEEEECCCCeEEEEEEeecCcccc-ccccchhHHHHHhhhHHHhhhHHHH
Q 009277 310 YTDLMKDQENGSASSAGAEKKLEQQRAALIFICVPVSPGHSRLIWAFPRNFQTW-IDKVVPRWIFHIGQNLILDSDLYLL 388 (538)
Q Consensus 310 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~Pv~pg~tr~~~~~~r~~~~~-~~~~~prw~~h~~~~~Vl~eD~~il 388 (538)
. .+..+.++.++|++|++|++.+.+....... ......... . ...|++||..++
T Consensus 84 ~----------------------~~~~~~~~~~~P~~p~~t~~~~~~~~~~~~~~~~~~~~~~~--~-~~~v~~ED~~i~ 138 (175)
T cd08883 84 R----------------------YPPGMDVNVVLPLGPERCKVVFDYFVDDSDGSDEAFIAESI--E-SDRVQKEDIEIC 138 (175)
T ss_pred e----------------------cCCeEEEEEEEeCCCCcEEEEEEEEEeccccchhHHHHHHH--H-HHHHHHHHHHHH
Confidence 2 1234566678899999999966543221110 011111111 1 567999999999
Q ss_pred HHHHhhhhccCCcccccccccCCccchHHHHHHHHHHHHH
Q 009277 389 HVEERKIMDVGPANWQKACFVPTKADALVVGFRRWLKKYA 428 (538)
Q Consensus 389 e~qq~~l~~~g~~~w~~~~~~p~~aD~~v~~fRrWl~~~~ 428 (538)
+.+|+++.+.++ ..+.+.+ ..|..+..|++|+++++
T Consensus 139 e~vQ~Gl~S~~~---~~G~l~~-~~E~~v~~Fh~~l~~~l 174 (175)
T cd08883 139 ESVQRGLESGAY---DPGRFSP-KRENGVHHFHRLLAQAL 174 (175)
T ss_pred HHHhhhhcCCCC---CCCCCCC-ccchHHHHHHHHHHHhh
Confidence 999999998764 3454432 35999999999999875
No 47
>cd03470 Rieske_cytochrome_bc1 Iron-sulfur protein (ISP) component of the bc(1) complex family, Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. The bc(1) complex is a multisubunit enzyme found in many different organisms including uni- and multi-cellular eukaryotes, plants (in their mitochondria) and bacteria. The cytochrome bc(1) and b6f complexes are central components of the respiratory and photosynthetic electron transport chains, respectively, which carry out similar core electron and proton transfer steps. The bc(1) and b6f complexes share a common core structure of three catalytic subunits: cyt b, the Rieske ISP, and either a cyt c1 in the bc(1) complex or cyt f in the b6f complex, which are arranged in an integral membrane-bound dimeric complex. While the core of the b6f complex is similar to that of the bc(1) complex, the domain arrangement outside the core and the complement of prosthetic groups are strikingly different.
Probab=99.51 E-value=8e-14 Score=125.31 Aligned_cols=93 Identities=18% Similarity=0.248 Sum_probs=77.8
Q ss_pred ecCCCCCCCcEEEEECCEEEEEEEeCC---------------------------CCeEEEEecCCCCCCCCCCCCcccCC
Q 009277 94 PVCDLDKRVPHAKKVLGLDVVVWWDRN---------------------------ENEWRVFADACPHRLAPLSEGRIDQW 146 (538)
Q Consensus 94 ~~~dL~~g~~~~~~l~g~~lvv~r~~~---------------------------~G~~~a~~d~CpHRga~Ls~G~v~~~ 146 (538)
.+++|++|+...++..|++|.|+|..+ +|+++|+.++|||.|+.+..+.+. .
T Consensus 5 dl~~l~~G~~~~v~w~Gkpv~I~~rt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~CtH~gc~~~~~~~~-~ 83 (126)
T cd03470 5 DLSKIEEGQLITVEWRGKPVFIRRRTPEEIAEAKAVDLSLLDDPDPAANRVRSGKPEWLVVIGICTHLGCVPTYRAGD-Y 83 (126)
T ss_pred EhhhCCCCCEEEEEECCeEEEEEECCHHHHhhhhhcchhhcCCccccccccccCCCcEEEEeCcCCCCCCeeccccCC-C
Confidence 468999999999999999999998520 369999999999999998877644 4
Q ss_pred CeEEeccCCcEEeCCCCcccCCCCCCCCCCCCCccccccceeeEEEEc-CeEEE
Q 009277 147 GRLQCVYHGWCFSGSGDCKFIPQAPPDGPPVHTFEKACAAVYPSTVQH-DIVWF 199 (538)
Q Consensus 147 ~~l~CpYHGW~Fd~~G~c~~iP~~~~~~~~~~~~~~~~l~~~pv~~~~-G~IwV 199 (538)
+.+.||+|||+||.+|+.+..|.. ..|+.||+++.+ +.|+|
T Consensus 84 ~~~~CPcHgs~Fdl~G~~~~gPa~------------~~L~~~p~~~~~~~~l~i 125 (126)
T cd03470 84 GGFFCPCHGSHYDASGRIRKGPAP------------LNLEVPPYKFLSDTTIVI 125 (126)
T ss_pred CEEEecCcCCEECCCCeEecCCCC------------CCCCeeeEEEecCCEEEe
Confidence 689999999999999999887642 359999999877 66654
No 48
>cd08887 RHO_alpha_C_3 C-terminal catalytic domain of the oxygenase alpha subunit of an uncharacterized subgroup of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases. C-terminal catalytic domain of the oxygenase alpha subunit of a functionally uncharacterized subgroup of the Rieske-type non-heme iron aromatic ring-hydroxylating oxygenase (RHO) family. RHOs, also known as aromatic ring hydroxylating dioxygenases, utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components and
Probab=99.49 E-value=4.4e-13 Score=127.46 Aligned_cols=169 Identities=14% Similarity=0.164 Sum_probs=101.3
Q ss_pred eeeEEeechHHHHHhcCCCCCCccccccccccCC-Cc-eEEeccCCeEEEEEEec--------cCCCCCCCCcccceeEE
Q 009277 232 GNRDIPYGYEVLLENLMDPAHVPYAHYGLMRTRK-PK-VKLDREGGRPVEMSVNK--------IDINGFIGKQEWGSSKF 301 (538)
Q Consensus 232 ~~~~~~~~w~~l~EN~lD~~H~~~~H~~~~~~~~-p~-~~~~~~~~~~~~~~~~~--------~~~~Gf~~~~~~~~~~f 301 (538)
...++++|||+++||++|+||++++|+++++... .. ...+.. +....+.... .....+..........+
T Consensus 4 ~~~~~~~NWK~~~en~~E~YH~~~~H~~t~~~~~~~~~~~~~~~-g~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (185)
T cd08887 4 RRFDVAANWKLALDGFLEGYHFKVLHKNTIAPYFYDNLSVYDAF-GPHSRIVFPRKSIESLRDLPEDEWDLRRHLTVIYT 82 (185)
T ss_pred eeeecCCCceEehhhcccccccchhchhhhcccccCCceEEecc-CCeeeeecchhhHHHHhcCChhHCCccCCeeEEEE
Confidence 3467899999999999999999999999986422 11 111111 1111111100 00000110001123345
Q ss_pred ecceEEEEeeccccccccCCCcccccccccccccEEEEEEEEECCCCeEEEEEEeecCccccccccchhHHH-HHhh-hH
Q 009277 302 LAPCIFFAYTDLMKDQENGSASSAGAEKKLEQQRAALIFICVPVSPGHSRLIWAFPRNFQTWIDKVVPRWIF-HIGQ-NL 379 (538)
Q Consensus 302 ~~P~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~Pv~pg~tr~~~~~~r~~~~~~~~~~prw~~-h~~~-~~ 379 (538)
++|++++.. .+..+.+..+.|+++++|++.+.+..............|.. .... ..
T Consensus 83 lFPN~~i~~----------------------~~~~~~~~~~~P~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (185)
T cd08887 83 LFPNVSLLV----------------------QPDHLEIIQIEPGSPDRTRVTVYLLIPPPPDTEEARAYWDKNWDFLMAV 140 (185)
T ss_pred ECCceEEEe----------------------cCCeEEEEEEEcCCCCceEEEEEEEecCCCCcHHHHHHHHHHHHHHHhh
Confidence 789988742 12455677789999999999665432221110111112221 1223 57
Q ss_pred HHhhhHHHHHHHHhhhhccCCcccccccccCCccchHHHHHHHHHHHHH
Q 009277 380 ILDSDLYLLHVEERKIMDVGPANWQKACFVPTKADALVVGFRRWLKKYA 428 (538)
Q Consensus 380 Vl~eD~~ile~qq~~l~~~g~~~w~~~~~~p~~aD~~v~~fRrWl~~~~ 428 (538)
|++||..+++.+|+++.+.+.+ .+.+ ...|..+.+|++|+++++
T Consensus 141 v~~ED~~~~e~~Q~Gl~s~~~~---~~~l--~~~E~~i~~fh~~~~~~l 184 (185)
T cd08887 141 VLDEDFEVAEEIQRGLASGAND---HLTF--GRNESALQHFHRWLERAL 184 (185)
T ss_pred hHHHHHHHHHHHhhhhhcCCCC---ceEe--ecCCHHHHHHHHHHHHHh
Confidence 8999999999999999987642 2222 357999999999999875
No 49
>cd08884 RHO_alpha_C_GbcA-like C-terminal catalytic domain of GbcA (glycine betaine catabolism A) from Pseudomonas aeruginosa PAO1 and related aromatic ring hydroxylating dioxygenases. C-terminal catalytic domain of GbcA (glycine betaine catabolism A) from Pseudomonas aeruginosa PAO1 and related Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs, also known as aromatic ring hydroxylating dioxygenases). RHOs utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components an
Probab=99.44 E-value=1.2e-12 Score=127.41 Aligned_cols=169 Identities=14% Similarity=0.157 Sum_probs=102.5
Q ss_pred eeeEEeechHHHHHhcCCCCCCccccccccccCCC--ceEEec-c---CC-----eEE-----EEEEecc--C--CCCCC
Q 009277 232 GNRDIPYGYEVLLENLMDPAHVPYAHYGLMRTRKP--KVKLDR-E---GG-----RPV-----EMSVNKI--D--INGFI 291 (538)
Q Consensus 232 ~~~~~~~~w~~l~EN~lD~~H~~~~H~~~~~~~~p--~~~~~~-~---~~-----~~~-----~~~~~~~--~--~~Gf~ 291 (538)
...++++|||+++||++|+||++++|+++.....+ ...... . ++ .++ .+..... . ..+..
T Consensus 14 ~~~~~~~NWK~~~en~~e~yH~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 93 (205)
T cd08884 14 ISYEVAANWKLVVENYRECYHCAGVHPELARSLSEFDDGGNPDPEAGGADFRGRRGPLRGGAESFTMDGKAVAPPLPGLT 93 (205)
T ss_pred eEEEEccCceehhHhCcccccCccccHHHHhhcccccccccccccccccceeeecccccCCceeecCCCCcccCCCCCCC
Confidence 45788999999999999999999999998741110 000000 0 00 000 0000000 0 01111
Q ss_pred CCc-ccceeEEecceEEEEeeccccccccCCCcccccccccccccEEEEEEEEECCCCeEEEEEEeecCccccc-cccch
Q 009277 292 GKQ-EWGSSKFLAPCIFFAYTDLMKDQENGSASSAGAEKKLEQQRAALIFICVPVSPGHSRLIWAFPRNFQTWI-DKVVP 369 (538)
Q Consensus 292 ~~~-~~~~~~f~~P~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~Pv~pg~tr~~~~~~r~~~~~~-~~~~p 369 (538)
... ......+++|++++.. .+..+.++.++|+++++|++.+.+........ .+...
T Consensus 94 ~~~~~~~~~~~lfPN~~~~~----------------------~~d~~~~~~~~P~~p~~t~~~~~~~~~~~~~~~~~~~~ 151 (205)
T cd08884 94 EADDRGALYYTLYPNSFLHL----------------------HPDHVVTFRVLPLSPDETLVRCKWLVHPDAVEGVDYDL 151 (205)
T ss_pred ccccCceEEEEeCCcEEEEE----------------------cCCEEEEEEEEeCCCCceEEEEEEEECCchhcccccCH
Confidence 111 1234456899987742 23466788899999999999665432211100 01100
Q ss_pred hHHHHHhhhHHHhhhHHHHHHHHhhhhccCCcccccccccCCccchHHHHHHHHHHHHH
Q 009277 370 RWIFHIGQNLILDSDLYLLHVEERKIMDVGPANWQKACFVPTKADALVVGFRRWLKKYA 428 (538)
Q Consensus 370 rw~~h~~~~~Vl~eD~~ile~qq~~l~~~g~~~w~~~~~~p~~aD~~v~~fRrWl~~~~ 428 (538)
. ....+...|+.||..+++.+|+++.+.++ ..+.+.+ .|..+.+|++|+++.+
T Consensus 152 ~-~~~~~~~~v~~ED~~i~e~vQ~Gl~S~~~---~~g~l~~--~E~~v~~F~~~~~~~l 204 (205)
T cd08884 152 D-DLVEVWDATNRQDWAICERNQRGVNSPAY---RPGPYSP--MEGGVLAFDRWYLERM 204 (205)
T ss_pred H-HHHHHHHHHHHHHHHHHHHhcccccCCCc---CCCCcCC--ccHHHHHHHHHHHHHh
Confidence 1 11234678999999999999999998764 4566655 5899999999999875
No 50
>cd08886 RHO_alpha_C_2 C-terminal catalytic domain of the oxygenase alpha subunit of an uncharacterized subgroup of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases. C-terminal catalytic domain of the oxygenase alpha subunit of a functionally uncharacterized subgroup of the Rieske-type non-heme iron aromatic ring-hydroxylating oxygenase (RHO) family. RHOs, also known as aromatic ring hydroxylating dioxygenases, utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components and
Probab=99.44 E-value=1.4e-12 Score=124.64 Aligned_cols=167 Identities=13% Similarity=0.092 Sum_probs=101.0
Q ss_pred eeeEEeechHHHHHhcCCCCCCccccccccccCC-CceEEeccCCeEEEEEE--eccCCCCCCCC-cccceeEEecceEE
Q 009277 232 GNRDIPYGYEVLLENLMDPAHVPYAHYGLMRTRK-PKVKLDREGGRPVEMSV--NKIDINGFIGK-QEWGSSKFLAPCIF 307 (538)
Q Consensus 232 ~~~~~~~~w~~l~EN~lD~~H~~~~H~~~~~~~~-p~~~~~~~~~~~~~~~~--~~~~~~Gf~~~-~~~~~~~f~~P~~~ 307 (538)
...++++|||+++||++|+||++++|+++++... .....+.. +....... ........... .......+++|+++
T Consensus 4 ~~~~~~~NWK~~~en~~e~yH~~~~H~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lFPN~~ 82 (182)
T cd08886 4 LTSEIKANWKNVVDNYLECYHCHTAHPDFVDSLDMDTYKHTTH-GNYSSQMANYGSAENSEYSVKPDADFAFYWLWPNTM 82 (182)
T ss_pred EEEEeecccEEEEecCCccccCcccChhHHhcccccccEEEec-CcEEEEEeccccccccccccccCcceeEEEEeCCEE
Confidence 3578899999999999999999999999986422 11111111 11111100 00000000001 01223456889988
Q ss_pred EEeeccccccccCCCcccccccccccccEEEEEEEEECCCCeEEEEEEee-cCccccccccchhHHHHHhhhHHH-hhhH
Q 009277 308 FAYTDLMKDQENGSASSAGAEKKLEQQRAALIFICVPVSPGHSRLIWAFP-RNFQTWIDKVVPRWIFHIGQNLIL-DSDL 385 (538)
Q Consensus 308 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~Pv~pg~tr~~~~~~-r~~~~~~~~~~prw~~h~~~~~Vl-~eD~ 385 (538)
++.. .....+.++.+.|++|++|++.+.+. +.-..... . .+ ...+...|+ +||.
T Consensus 83 i~~~--------------------~~~~~~~~~~~~P~~p~~t~~~~~~~~~~~~~~~~-~-~~--~~~~~~~v~~~ED~ 138 (182)
T cd08886 83 LNVY--------------------PGAGNMGVINIIPVDAETTLQHYDFYFRDEELTDE-E-KE--LIEYYRQVLQPEDL 138 (182)
T ss_pred EEee--------------------CCCCeEEEEEEEeCCCCeEEEEEEEEecCCCccHH-H-HH--HHHHHHHhcchhhH
Confidence 7421 11135667888999999999876543 21111111 0 11 123456677 9999
Q ss_pred HHHHHHHhhhhccCCcccccccccC-----CccchHHHHHHHHHHH
Q 009277 386 YLLHVEERKIMDVGPANWQKACFVP-----TKADALVVGFRRWLKK 426 (538)
Q Consensus 386 ~ile~qq~~l~~~g~~~w~~~~~~p-----~~aD~~v~~fRrWl~~ 426 (538)
.+++.+|+++.+..+ ..+.+.+ ...|.++.+|++|+++
T Consensus 139 ~l~e~vQ~Gl~S~~~---~~g~l~~~~~~~~~~E~~v~~fh~~l~~ 181 (182)
T cd08886 139 ELVESVQRGLKSRAF---GQGRIVVDPSGSGISEHAVHHFHGLVLE 181 (182)
T ss_pred HHHHHHhcccccCCC---CCceeccCcccCCccchhHHHHHHHHhc
Confidence 999999999998764 4566642 2459999999999975
No 51
>PRK13474 cytochrome b6-f complex iron-sulfur subunit; Provisional
Probab=99.39 E-value=2.1e-12 Score=122.89 Aligned_cols=87 Identities=20% Similarity=0.205 Sum_probs=70.8
Q ss_pred CCCCcEEEE-ECCEE-EEEEEeCCCCeE--EEEecCCCCCCCCCCCCcccCCCeEEeccCCcEEeCCCCcccCCCCCCCC
Q 009277 99 DKRVPHAKK-VLGLD-VVVWWDRNENEW--RVFADACPHRLAPLSEGRIDQWGRLQCVYHGWCFSGSGDCKFIPQAPPDG 174 (538)
Q Consensus 99 ~~g~~~~~~-l~g~~-lvv~r~~~~G~~--~a~~d~CpHRga~Ls~G~v~~~~~l~CpYHGW~Fd~~G~c~~iP~~~~~~ 174 (538)
++|++..++ +.|.+ +++.+ .+ |++ +|+++.|||.|++|+.+..+ +.+.||+|||+||.+|+.+..|.
T Consensus 73 ~~g~~~~v~~~~g~~~~lv~~-~~-g~~~~~a~~~~CtH~gc~l~~~~~~--~~~~CP~Hgs~Fd~tG~~~~gPa----- 143 (178)
T PRK13474 73 PAGDRSLVQGLKGDPTYLVVE-ED-GTIASYGINAVCTHLGCVVPWNSGE--NKFQCPCHGSQYDATGKVVRGPA----- 143 (178)
T ss_pred CCCCcEEEEEcCCCeEEEEEe-CC-CEEEEEEecCCCCCCCCccccccCC--CEEEecCcCCEECCCCCCccCCC-----
Confidence 567777776 66777 55544 44 789 57799999999999988753 58999999999999999988764
Q ss_pred CCCCCccccccceeeEEEEcCeEEEcc
Q 009277 175 PPVHTFEKACAAVYPSTVQHDIVWFWP 201 (538)
Q Consensus 175 ~~~~~~~~~~l~~~pv~~~~G~IwV~~ 201 (538)
...|+.|++++++|.|+|.+
T Consensus 144 -------~~~L~~y~v~v~~g~v~v~~ 163 (178)
T PRK13474 144 -------PLSLALVHVTVEDDKVLFSP 163 (178)
T ss_pred -------CCCCCeEeEEEECCEEEEEE
Confidence 23599999999999999876
No 52
>PF00848 Ring_hydroxyl_A: Ring hydroxylating alpha subunit (catalytic domain); InterPro: IPR015879 Aromatic ring hydroxylating dioxygenases are multicomponent 1,2-dioxygenase complexes that convert closed-ring structures to non-aromatic cis-diols []. The complex has both hydroxylase and electron transfer components. The hydroxylase component is itself composed of two subunits: an alpha-subunit of about 50 kDa, and a beta-subunit of about 20 kDa. The electron transfer component is either composed of two subunits: a ferredoxin and a ferredoxin reductase or by a single bifunctional ferredoxin/reductase subunit. Sequence analysis of hydroxylase subunits of ring hydroxylating systems (including toluene, benzene and napthalene 1,2-dioxygenases) suggests they are derived from a common ancestor []. The alpha-subunit binds both a Rieske-like 2Fe-2S cluster and an iron atom: conserved Cys and His residues in the N-terminal region may provide 2Fe-2S ligands, while conserved His and Tyr residues may coordinate the iron. The beta subunit may be responsible for the substrate specificity of the dioxygenase system [].; GO: 0005506 iron ion binding, 0016708 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of two atoms of oxygen into one donor, 0051537 2 iron, 2 sulfur cluster binding, 0019439 aromatic compound catabolic process, 0055114 oxidation-reduction process; PDB: 1WQL_A 3EN1_A 3EQQ_A 2CKF_A 2BMR_A 2BMQ_A 2BMO_A 2GBW_E 2GBX_C 2XRX_A ....
Probab=99.35 E-value=1.3e-12 Score=124.72 Aligned_cols=170 Identities=14% Similarity=0.182 Sum_probs=97.8
Q ss_pred eeEEeechHHHHHhcCCCCCCccccccccccCCC---c------eEEeccCCeEEE----EEE-----eccCCCCCCC--
Q 009277 233 NRDIPYGYEVLLENLMDPAHVPYAHYGLMRTRKP---K------VKLDREGGRPVE----MSV-----NKIDINGFIG-- 292 (538)
Q Consensus 233 ~~~~~~~w~~l~EN~lD~~H~~~~H~~~~~~~~p---~------~~~~~~~~~~~~----~~~-----~~~~~~Gf~~-- 292 (538)
..+++||||+++||++|+||++++|+++++.... . +......+.... ... ......+...
T Consensus 11 ~~~~~~NWK~~~EN~~e~YH~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (209)
T PF00848_consen 11 RYEVDCNWKLAVENFLEGYHVPFLHPSTLGFFDPSNDEQAEIASVEFFGGHGSVWAGRMREEPQPEPSERRAWKGRPFPP 90 (209)
T ss_dssp HHHESS-HHHHHHHHHHCTTHHHHTHHHHHHHSCTTGGHHEEEEEEEESSTCEEETHHHHHHHHHHHHHHHHSHHHHHHH
T ss_pred EEEecccceEHHHhCcccccccccccchhhhhhccccccccccccccccccccccccccccccccccchhhhhhhhhccc
Confidence 3578999999999999999999999998653211 1 111111111110 000 0000000000
Q ss_pred -C---c-ccceeEEecceEEEEeeccccccccCCCcccccccccccccEEEEEEEEECCCCeEEEEEEeecCccc-cccc
Q 009277 293 -K---Q-EWGSSKFLAPCIFFAYTDLMKDQENGSASSAGAEKKLEQQRAALIFICVPVSPGHSRLIWAFPRNFQT-WIDK 366 (538)
Q Consensus 293 -~---~-~~~~~~f~~P~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~Pv~pg~tr~~~~~~r~~~~-~~~~ 366 (538)
. . ......+++||+++... +....+..++|++|++|++.+.+...... ...+
T Consensus 91 ~~~~~~~~~~~~~~iFPn~~i~~~----------------------~~~~~~~~~~P~~p~~t~~~~~~~~~~~~~~~~~ 148 (209)
T PF00848_consen 91 GLPDDQRMGYRNYVIFPNLSIIVY----------------------PDHFTVRTIIPIGPDRTEVWSWWFVPKDEGAPPE 148 (209)
T ss_dssp HHHHHHHTSEEEEEETTTEEEEE-----------------------TTTTEEEEEEEESTTEEEEEEEEEEETT--STHH
T ss_pred cccccccccccceeeCCCEEEEec----------------------ccccEEEEEEECCCCeEEEEEEEEEeCCcccchh
Confidence 0 0 11345678999887521 11123677799999999996644322211 0011
Q ss_pred cchhHHHHHhhhH--HHhhhHHHHHHHHhhhhccCCcccccccccCCccchHHHHHHHHHHHHHc
Q 009277 367 VVPRWIFHIGQNL--ILDSDLYLLHVEERKIMDVGPANWQKACFVPTKADALVVGFRRWLKKYAG 429 (538)
Q Consensus 367 ~~prw~~h~~~~~--Vl~eD~~ile~qq~~l~~~g~~~w~~~~~~p~~aD~~v~~fRrWl~~~~~ 429 (538)
...++. ...... |+.||..+++.||+++.+.++ .++. +....|..+..|++|+++++.
T Consensus 149 ~~~~~~-~~~~~~~~~~~ED~~~~e~~Q~gl~s~~~---~~~~-~~~~~E~~v~~f~~~~~~~~~ 208 (209)
T PF00848_consen 149 FREARI-RNWDRFFGVFAEDIEIVERQQRGLRSRGF---DPGR-LSGTSERGVRHFHRWWRRYMA 208 (209)
T ss_dssp HHHHHH-HHHHHHHSTHHHHHHHHHHHHHHTTSSTS---CTSE-ESSCSSHHHHHHHHHHHHHHH
T ss_pred hHHHHH-HHHHhcCcHHHHHHHHHHHHHHHHcCCCC---CCCC-CCCcCCHHHHHHHHHHHHHhc
Confidence 111111 111111 899999999999999988764 2344 334679999999999999874
No 53
>TIGR01416 Rieske_proteo ubiquinol-cytochrome c reductase, iron-sulfur subunit. Most members of this family have a recognizable twin-arginine translocation (tat) signal sequence (DeltaPh-dependent translocation in chloroplast) for transport across the membrane with the 2Fe-2S group already bound. These signal sequences include a motif resembling RRxFLK before the transmembrane helix.
Probab=99.24 E-value=3.4e-11 Score=114.25 Aligned_cols=95 Identities=18% Similarity=0.201 Sum_probs=76.3
Q ss_pred eEEeeecCCCCCCCcEEEEECCEEEEEEEeCC---------------------------------CCeEEEEecCCCCCC
Q 009277 89 WYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRN---------------------------------ENEWRVFADACPHRL 135 (538)
Q Consensus 89 W~~v~~~~dL~~g~~~~~~l~g~~lvv~r~~~---------------------------------~G~~~a~~d~CpHRg 135 (538)
|..| ..+||++|+.+.+.+.|++|+|+|..+ ++++.|+.+.|||.|
T Consensus 41 ~~~v-~l~eL~pG~~~~v~~~GkpI~I~~~t~~~~~~~~~~~~~~l~Dp~~~~~~~~~~~~~r~~~~~~~a~~~~CtH~G 119 (174)
T TIGR01416 41 PTEV-DVSKIQPGQQLTVEWRGKPVFIRRRTKKEIDALKALDLGALKDPNSEAQQPDYARVKRSGKPEWLVVIGICTHLG 119 (174)
T ss_pred cEEE-EHHHCCCCCeEEEEECCeEEEEEeCCHHHhhhhhccchhhcCCCcccccCcchhhhhhccCCcEEEEEeccCCCC
Confidence 4667 689999999999999999999998511 279999999999999
Q ss_pred CC-CCCCcccCCCeEEeccCCcEEeCCCCcccCCCCCCCCCCCCCccccccceeeEEEEcCe
Q 009277 136 AP-LSEGRIDQWGRLQCVYHGWCFSGSGDCKFIPQAPPDGPPVHTFEKACAAVYPSTVQHDI 196 (538)
Q Consensus 136 a~-Ls~G~v~~~~~l~CpYHGW~Fd~~G~c~~iP~~~~~~~~~~~~~~~~l~~~pv~~~~G~ 196 (538)
+. +..+..+..+.+.||+||++||.+|+.+..|.. ..|..||++..++.
T Consensus 120 c~~~~~~~~~~~~~~~CPcHgs~Fd~~G~~~~gpa~------------~~L~~~~~~~~~~~ 169 (174)
T TIGR01416 120 CIPTYGPEEGDKGGFFCPCHGSHYDTAGRVRKGPAP------------LNLPVPPYKFLSDT 169 (174)
T ss_pred CccccccCCCCCCEEEeCCCCCEECCCCcEecCCCC------------CCCCCCCEEEcCCC
Confidence 65 455554324679999999999999998876632 34899999877663
No 54
>cd08882 RHO_alpha_C_MupW-like C-terminal catalytic domain of Pseudomonas fluorescens MupW and related aromatic ring hydroxylating dioxygenases. C-terminal catalytic domain of the oxygenase alpha subunit of Pseudomonas fluorescens MupW and related Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs, also known as aromatic ring hydroxylating dioxygenases). RHOs utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components and have an N-terminal domain, which binds a Rieske-l
Probab=98.95 E-value=3.5e-09 Score=105.92 Aligned_cols=90 Identities=16% Similarity=0.117 Sum_probs=55.2
Q ss_pred EEEEEEEEE--CCCCeEEEEEEe--ecCccc--cc----cccchhHHHHHhhhHHHhhhHHHHHHHHhhhhccCCccccc
Q 009277 336 AALIFICVP--VSPGHSRLIWAF--PRNFQT--WI----DKVVPRWIFHIGQNLILDSDLYLLHVEERKIMDVGPANWQK 405 (538)
Q Consensus 336 ~~~~~~~~P--v~pg~tr~~~~~--~r~~~~--~~----~~~~prw~~h~~~~~Vl~eD~~ile~qq~~l~~~g~~~w~~ 405 (538)
...++.+.| ++|++|.+...+ ...... .. ++.............|++||..+++.+|+++.+.++. .
T Consensus 144 ~~~~~r~~P~~~dpd~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~ED~~~~e~vQ~Gl~S~~~~---~ 220 (243)
T cd08882 144 GLLVYRFRPHGDDPEKCIFDIWSLERYPEGAEPPEPPEEHEVFSDAPELGGLGLVLDQDFSNLPAVQKGMHSRGFG---G 220 (243)
T ss_pred ccEEEEeecCCCCCCeEEEEEEEEEECCCCCCCCCCCccccccccccccccccchhHhHHHHHHHHHHHhccCCCC---C
Confidence 345667788 599999985432 211111 00 0111111100013679999999999999999987653 2
Q ss_pred ccccCCccchHHHHHHHHHHHHHc
Q 009277 406 ACFVPTKADALVVGFRRWLKKYAG 429 (538)
Q Consensus 406 ~~~~p~~aD~~v~~fRrWl~~~~~ 429 (538)
..+ .-..|..+.+|++||+++++
T Consensus 221 ~~l-~~~EE~~I~~FH~~l~~~l~ 243 (243)
T cd08882 221 LVL-ANQEESRIRHFHEVLDDYLA 243 (243)
T ss_pred ccc-CchHHHHHHHHHHHHHHHhC
Confidence 222 22235999999999999863
No 55
>cd08880 RHO_alpha_C_ahdA1c-like C-terminal catalytic domain of the large/alpha subunit (ahdA1c) of a ring-hydroxylating dioxygenase from Sphingomonas sp. strain P2 and related proteins. C-terminal catalytic domain of the large subunit (ahdA1c) of the AhdA3A4A2cA1c salicylate 1-hydroxylase complex from Sphingomonas sp. strain P2, and related Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs, also known as aromatic ring hydroxylating dioxygenases). AhdA3A4A2cA1c is one of three known isofunctional salicylate 1-hydroxylase complexes in strain P2, involved in phenanthrene degradation, which catalyze the monooxygenation of salicylate, the metabolite of phenanthene degradation, to produce catechol. This complex prefers salicylate over other substituted salicylates; the other two salicylate 1-hydroxylases have different substrate preferences. RHOs utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative deg
Probab=98.90 E-value=2.3e-08 Score=98.72 Aligned_cols=170 Identities=16% Similarity=0.199 Sum_probs=94.2
Q ss_pred eeEEeechHHHHHhcCCCCCCccccc--cccccCC--Cc--eEEeccCCeEEEEEEeccCC---------------CCCC
Q 009277 233 NRDIPYGYEVLLENLMDPAHVPYAHY--GLMRTRK--PK--VKLDREGGRPVEMSVNKIDI---------------NGFI 291 (538)
Q Consensus 233 ~~~~~~~w~~l~EN~lD~~H~~~~H~--~~~~~~~--p~--~~~~~~~~~~~~~~~~~~~~---------------~Gf~ 291 (538)
..++++|||+.+||+.|+||++.+|. .+++... .. ...+..++ ...+....... ..+.
T Consensus 5 ~~~~~~nwk~~~~~~~~~yh~~~~h~~~~t~g~~~~~~~~~~~~~~~g~-H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (222)
T cd08880 5 RQRIPGNWKLYAENVKDPYHASLLHLFFVTFGLWRADQKSSIIDDEHGR-HSVMTSTKSGDDEAAEKDSEEIRSFRDDFT 83 (222)
T ss_pred eeecCCCcHHHHHhccCcchHHHHhhhheeeecccCCCCCceEEecCCC-ceEEEEecCCCcccccchHHHHHHHhhccc
Confidence 35789999999999999999999999 7776421 11 22222221 11111110000 0010
Q ss_pred --CC-----------cccceeEEecceEEEEeeccccccccCCCcccccccccccccEEEEEEEEECCCCeEEEEEEeec
Q 009277 292 --GK-----------QEWGSSKFLAPCIFFAYTDLMKDQENGSASSAGAEKKLEQQRAALIFICVPVSPGHSRLIWAFPR 358 (538)
Q Consensus 292 --~~-----------~~~~~~~f~~P~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~Pv~pg~tr~~~~~~r 358 (538)
.. ........++|++++.. ....+.+..+.|++|++|++.|.+..
T Consensus 84 l~d~~~~~~~~e~~~~~~~~~~~iFPNl~l~~----------------------~~~~l~v~~~~P~gpd~t~~~~~~~~ 141 (222)
T cd08880 84 LLDPSLLDGRAEFDDDITLVIQSIFPSLVVQQ----------------------IQNTLAVRHIIPKGPDSFELVWTYFG 141 (222)
T ss_pred cCCHHHHhhhHhhcCCCceEEEEECCCEEEec----------------------cCCcEEEEEEEecCCCeEEEEEEEEE
Confidence 00 01123455788887631 23455677789999999998765431
Q ss_pred CccccccccchhHHHHH--h--hhHHHhhhHHHHHHHHhhhhccCCc-cc--------ccccccCCccchHHHHHHHHHH
Q 009277 359 NFQTWIDKVVPRWIFHI--G--QNLILDSDLYLLHVEERKIMDVGPA-NW--------QKACFVPTKADALVVGFRRWLK 425 (538)
Q Consensus 359 ~~~~~~~~~~prw~~h~--~--~~~Vl~eD~~ile~qq~~l~~~g~~-~w--------~~~~~~p~~aD~~v~~fRrWl~ 425 (538)
... ..++....+..+. + ...|..||..+++.+|+++.+.... .+ .... ...++..+-.|.+|++
T Consensus 142 ~~~-~~~e~~~~~~~~~~~~gp~g~v~~ED~ei~e~vQ~Gl~s~~~~~~~~~~g~~~~~~~~--~~~~E~~ir~f~~~y~ 218 (222)
T cd08880 142 YED-DDEEMTRLRLRQANLVGPAGFVSMEDGEAIEFVQRGVEGDGGDRSVIEMGGGDVESSD--HMVTEAAIRGFWKYYR 218 (222)
T ss_pred ecC-CCHHHHHHHHHHhcccCCcCCCccchHHHHHHhCchhcCCCcccchhhhCCCCCCCcC--cccCcHHHHHHHHHHH
Confidence 111 1111111222111 1 1358889999999999999876543 11 0011 1125777777777777
Q ss_pred HHH
Q 009277 426 KYA 428 (538)
Q Consensus 426 ~~~ 428 (538)
+++
T Consensus 219 ~~M 221 (222)
T cd08880 219 KVM 221 (222)
T ss_pred HHh
Confidence 765
No 56
>cd03475 Rieske_SoxF_SoxL SoxF and SoxL family, Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. SoxF is a subunit of the terminal oxidase supercomplex SoxM in the plasma membrane of Sulfolobus acidocaldarius that combines features of a cytochrome bc(1) complex and a cytochrome. The Rieske domain of SoxF has a 12 residue insertion which is not found in eukaryotic and bacterial Rieske proteins and is thought to influence the redox properties of the iron-sulfur cluster. SoxL is a Rieske protein which may be part of an archaeal bc-complex homologue whose physiological function is still unknown. SoxL has two features not seen in other Rieske proteins; (i) a significantly greater distance between the two cluster-binding sites and (ii) an unexpected Pro - Asp substitution at one of the cluster binding sites. SoxF and SoxL are found in archaea and in bacteria.
Probab=98.74 E-value=6e-08 Score=91.01 Aligned_cols=66 Identities=14% Similarity=0.126 Sum_probs=49.7
Q ss_pred CeEEEEecCCCCCCCCCC---------------CCcccCCCeEEeccCCcEEeC-CCC-cccCCCCCCCCCCCCCccccc
Q 009277 122 NEWRVFADACPHRLAPLS---------------EGRIDQWGRLQCVYHGWCFSG-SGD-CKFIPQAPPDGPPVHTFEKAC 184 (538)
Q Consensus 122 G~~~a~~d~CpHRga~Ls---------------~G~v~~~~~l~CpYHGW~Fd~-~G~-c~~iP~~~~~~~~~~~~~~~~ 184 (538)
|+++|+++.|||+|++|. +|... ++.|.||+|||+||. +|. .+..|. ...
T Consensus 75 g~IvA~S~iCpHlGc~l~~~~~y~~~~~~~~~~~g~~~-~~~i~CPcHgS~FD~~tGg~v~~GPA------------~~p 141 (171)
T cd03475 75 KSIVAFSAICQHLGCQPPPIVSYPSYYPPDKAPGLASK-GAVIHCCCHGSTYDPYKGGVVLTGPA------------PRP 141 (171)
T ss_pred CEEEEEeCcCCCCCCccccccccccccccccccccccc-CCEEEcCCCCCEEeCCCCCeEcCCCC------------CCC
Confidence 799999999999999775 34444 478999999999995 564 333232 234
Q ss_pred cceeeEEEEc--CeEEEc
Q 009277 185 AAVYPSTVQH--DIVWFW 200 (538)
Q Consensus 185 l~~~pv~~~~--G~IwV~ 200 (538)
|..|++++.+ |.||.-
T Consensus 142 Lp~~~L~~d~~~d~iyAv 159 (171)
T cd03475 142 LPAVILEYDSSTDDLYAV 159 (171)
T ss_pred cCEeEEEEeCCCCcEEEE
Confidence 8999998884 778753
No 57
>PF11723 Aromatic_hydrox: Homotrimeric ring hydroxylase; InterPro: IPR021028 This entry represents the catalytic domain from a family of homotrimeric enzymes that hydroxylate aromatic compounds, including 2-oxo-1,2-dihydroquinoline 8-monooxygenase from Pseudomonas putida and carbazole 1,9a-dioxygenase from Janthinobacterium. The catalytic domain is found C-termnial to the iron-sulphur-binding Rieske domain and is composed of antiparallel beta sheets and alpha helices []. It is part of a much larger superfamily of lipid binding domains which form a common fold that works as a versatile scaffold for binding bulky ligands [].; PDB: 1Z03_D 1Z01_E 1Z02_F 2DE6_A 2DE7_C 1WW9_A 2DE5_C 3GKQ_F 3GCF_L.
Probab=98.30 E-value=7.4e-06 Score=79.91 Aligned_cols=92 Identities=13% Similarity=0.208 Sum_probs=60.9
Q ss_pred ccEEEEEEEEECCCCeEEEEEEeecCccc------cccccchhHHHHHhhhHHHhhhHHHHHHHHhhhhccCCccccccc
Q 009277 334 QRAALIFICVPVSPGHSRLIWAFPRNFQT------WIDKVVPRWIFHIGQNLILDSDLYLLHVEERKIMDVGPANWQKAC 407 (538)
Q Consensus 334 ~~~~~~~~~~Pv~pg~tr~~~~~~r~~~~------~~~~~~prw~~h~~~~~Vl~eD~~ile~qq~~l~~~g~~~w~~~~ 407 (538)
+.++.+=..+|++..+.+++-...+.-.. +..+...+|.. ...+.++++|+..-|++|...... ..|.+.
T Consensus 141 p~~~qyEwYVPID~~~h~Y~q~l~~~~~t~ee~~~f~~~f~~~~~~-~~l~gFN~~D~wAREamq~fY~d~--~Gw~~E- 216 (240)
T PF11723_consen 141 PDFTQYEWYVPIDEDTHRYFQLLGKVCPTEEERKAFEYEFEEQWKP-LALHGFNDDDIWAREAMQPFYADD--TGWDRE- 216 (240)
T ss_dssp TTEEEEEEEEEEETTEEEEEEEEEEE-SSHHHHHHHHHHHHHTHHH-HTTTTTTHHHHHHHHHHHHHHHTS--HHHHH--
T ss_pred CCeeEEEEEEEecccceeeEeEEeeecCCHHHHHHHHHHHHHHhHH-hhccCCCchhHHHHHHhhhhhhcc--CCCCHH-
Confidence 45667777799999999997655433211 11122233433 345778999999999999877653 346553
Q ss_pred ccCCccchHHHHHHHHHHHHHcC
Q 009277 408 FVPTKADALVVGFRRWLKKYAGG 430 (538)
Q Consensus 408 ~~p~~aD~~v~~fRrWl~~~~~g 430 (538)
...+.|..++++||...++..|
T Consensus 217 -~L~~~D~sIi~WRkLas~~nrg 238 (240)
T PF11723_consen 217 -QLFEPDKSIIAWRKLASEHNRG 238 (240)
T ss_dssp ----GGGHHHHHHHHHHHHH-SE
T ss_pred -HhcCcchhHHHHHHHHHHhhcc
Confidence 4567799999999999998765
No 58
>cd08879 RHO_alpha_C_AntDO-like C-terminal catalytic domain of the oxygenase alpha subunit of Pseudomonas resinovorans strain CA10 anthranilate 1,2-dioxygenase and related aromatic ring hydroxylating dioxygenases. C-terminal catalytic domain of the oxygenase alpha subunit of anthranilate 1,2-dioxygenase (AntDO) and related Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs, also known as aromatic ring hydroxylating dioxygenases). RHOs utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are
Probab=98.29 E-value=2.9e-06 Score=84.67 Aligned_cols=30 Identities=23% Similarity=0.313 Sum_probs=27.3
Q ss_pred eeEEeechHHHHHhcCCCCCCccccccccc
Q 009277 233 NRDIPYGYEVLLENLMDPAHVPYAHYGLMR 262 (538)
Q Consensus 233 ~~~~~~~w~~l~EN~lD~~H~~~~H~~~~~ 262 (538)
.+.+++|||+.+||+.|.||++++|..++.
T Consensus 5 ~~~~~~nWK~~~en~~d~yH~~~~H~~~~~ 34 (237)
T cd08879 5 RYRYRGNWKLQLENGTDGYHPPFVHASYVA 34 (237)
T ss_pred EEEeeceEEEEeeecCccccCccccHHHHH
Confidence 457899999999999999999999998874
No 59
>cd08881 RHO_alpha_C_NDO-like C-terminal catalytic domain of the oxygenase alpha subunit of naphthalene 1,2-dioxygenase (NDO) and related aromatic ring hydroxylating dioxygenases. C-terminal catalytic domain of the oxygenase alpha subunit of naphthalene 1,2-dioxygenase (NDO) and related Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs, also known as aromatic ring hydroxylating dioxygenases). This domain binds non-heme Fe(II). RHOs utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents form the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are th
Probab=98.21 E-value=3.7e-06 Score=82.11 Aligned_cols=30 Identities=20% Similarity=0.241 Sum_probs=27.4
Q ss_pred eeEEeechHHHHHhcC-CCCCCccccccccc
Q 009277 233 NRDIPYGYEVLLENLM-DPAHVPYAHYGLMR 262 (538)
Q Consensus 233 ~~~~~~~w~~l~EN~l-D~~H~~~~H~~~~~ 262 (538)
...+++|||+++||++ |.||++++|..++.
T Consensus 10 ~~~~~~NWK~~~en~~~d~yH~~~~H~~~~~ 40 (206)
T cd08881 10 KWVIKANWKLAAENFAGDGYHTGTTHASALE 40 (206)
T ss_pred EEEecCcceehhhccccccccchhhhHHHHH
Confidence 4678999999999999 99999999998874
No 60
>COG0723 QcrA Rieske Fe-S protein [Energy production and conversion]
Probab=97.91 E-value=3e-05 Score=73.96 Aligned_cols=64 Identities=17% Similarity=0.245 Sum_probs=50.8
Q ss_pred eEEEEecCCCCCCCCCCC-CcccCCCeEEeccCCcEEeCCCCcccCCCCCCCCCCCCCccccccceeeEEEEcCeEEE
Q 009277 123 EWRVFADACPHRLAPLSE-GRIDQWGRLQCVYHGWCFSGSGDCKFIPQAPPDGPPVHTFEKACAAVYPSTVQHDIVWF 199 (538)
Q Consensus 123 ~~~a~~d~CpHRga~Ls~-G~v~~~~~l~CpYHGW~Fd~~G~c~~iP~~~~~~~~~~~~~~~~l~~~pv~~~~G~IwV 199 (538)
+|.|+...|.|.|+.... +... ++.+.||+||-+||.+|+.+..|+. ..|..++++..++-+++
T Consensus 100 ~~~a~~~iCtHlGC~~~~~~~~~-~~~~~CPCHGS~yd~~g~vv~GPA~------------~~L~~~~~~~~~d~~~~ 164 (177)
T COG0723 100 EIVAYSAICTHLGCTVPWNNAGA-EGGFFCPCHGSRYDPDGGVVKGPAP------------RPLPIPPLEYDSDKLYL 164 (177)
T ss_pred cEEEEeeeccCCCCccCcccCCC-CCeEEccCCCCeEcCCCCeeCCCCC------------CCcCCceEEEeCCceEE
Confidence 577999999999999987 3333 4789999999999999997776643 34788888877774443
No 61
>KOG1671 consensus Ubiquinol cytochrome c reductase, subunit RIP1 [Energy production and conversion]
Probab=97.44 E-value=0.00014 Score=68.96 Aligned_cols=74 Identities=24% Similarity=0.340 Sum_probs=55.0
Q ss_pred cCCCCCCCcEEEEECCEEEEEE--------------------------EeCCCCeEEEEecCCCCCCCCCCCCcccCCCe
Q 009277 95 VCDLDKRVPHAKKVLGLDVVVW--------------------------WDRNENEWRVFADACPHRLAPLSEGRIDQWGR 148 (538)
Q Consensus 95 ~~dL~~g~~~~~~l~g~~lvv~--------------------------r~~~~G~~~a~~d~CpHRga~Ls~G~v~~~~~ 148 (538)
..|+|+|+-.++.-.|++++|= |.+. -+|.++..+|.|.|+-.-.-..+ .|.
T Consensus 92 l~~IPeGk~~~~kwrGkpvfirhrt~~ei~~~r~V~~s~lrDPq~d~~rvk~-~ewl~~igVCThLGCVp~~~AGd-~gg 169 (210)
T KOG1671|consen 92 LSDIPEGKTVAFKWRGKPVFIRHRTKAEIEGERNVPQSTLRDPQDDVDRVKK-PEWLVVIGVCTHLGCVPIANAGD-YGG 169 (210)
T ss_pred eecCCCCCCcceeccCCceEEeeccccccccccccchhhccCchhhhhhccC-cceEEEEeeeccccccccccccc-cCc
Confidence 4566667667777777777662 3333 46899999999999876533222 467
Q ss_pred EEeccCCcEEeCCCCcccCCCC
Q 009277 149 LQCVYHGWCFSGSGDCKFIPQA 170 (538)
Q Consensus 149 l~CpYHGW~Fd~~G~c~~iP~~ 170 (538)
.-||+||-.||..|+....|+-
T Consensus 170 ~~CPCHGSHYdasGRIrkGPAP 191 (210)
T KOG1671|consen 170 YYCPCHGSHYDASGRIRKGPAP 191 (210)
T ss_pred eecccccccccccCceecCCCC
Confidence 9999999999999999999853
No 62
>TIGR03171 soxL2 Rieske iron-sulfur protein SoxL2. This iron-sulfur protein is found in a contiguous genomic region with subunits of cytochrome b558/566 in several archaeal species, and appears to be part of a cytochrome bc1-analogous system.
Probab=97.34 E-value=0.00048 Score=70.41 Aligned_cols=67 Identities=10% Similarity=0.065 Sum_probs=47.4
Q ss_pred CeEEEEecCCCCCCCCCCCC------cc--------------------c----CCCeEEeccCCcEEeCC--CCcccCCC
Q 009277 122 NEWRVFADACPHRLAPLSEG------RI--------------------D----QWGRLQCVYHGWCFSGS--GDCKFIPQ 169 (538)
Q Consensus 122 G~~~a~~d~CpHRga~Ls~G------~v--------------------~----~~~~l~CpYHGW~Fd~~--G~c~~iP~ 169 (538)
+.|.||...|+|.|++++.- .+ . ..+.+.||+||-+||.+ |+.+..|.
T Consensus 176 ~~IVAyS~IC~H~GC~~~~~~~Ypp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~CPCHgS~FD~~~gg~Vv~GPA 255 (321)
T TIGR03171 176 KSIVAYSAICQHLGCTPPYIHFYPPNYVNPSQLTAPEPDQLTAQALLAAKQANVPALIHCDCHGSTYDPYHGAAVLTGPT 255 (321)
T ss_pred CCEEEEecccCcCCCCcchhhccCcccccccccccccccccchhhhhhhhccCCCCeEECCCCCCEECCCCCCceeCCCC
Confidence 57999999999999988321 00 0 01389999999999953 56777664
Q ss_pred CCCCCCCCCCccccccceeeEEEE--cCeEEEc
Q 009277 170 APPDGPPVHTFEKACAAVYPSTVQ--HDIVWFW 200 (538)
Q Consensus 170 ~~~~~~~~~~~~~~~l~~~pv~~~--~G~IwV~ 200 (538)
.. .|..+++++. .|.|+.-
T Consensus 256 ~r------------pLp~i~l~~d~~~~~l~Av 276 (321)
T TIGR03171 256 VR------------PLPAVILEWDSSTDYLYAI 276 (321)
T ss_pred CC------------CCCcceEEEeCCCCeEEEE
Confidence 32 3677777765 5667754
No 63
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=94.67 E-value=0.017 Score=62.21 Aligned_cols=38 Identities=39% Similarity=0.760 Sum_probs=33.5
Q ss_pred CCCCCCCCCcccCCCeEEeccCCcEEe-CCCCcccCCCCC
Q 009277 133 HRLAPLSEGRIDQWGRLQCVYHGWCFS-GSGDCKFIPQAP 171 (538)
Q Consensus 133 HRga~Ls~G~v~~~~~l~CpYHGW~Fd-~~G~c~~iP~~~ 171 (538)
|.|+||..|- -.+|+++||+||-+|+ .+|....-|...
T Consensus 1 hygapl~~g~-~s~g~v~cpwhgacfn~~~gdiedfP~~~ 39 (478)
T KOG1336|consen 1 HYGAPLAKGV-LSRGRVRCPWHGACFNLSTGDIEDFPGLD 39 (478)
T ss_pred CCCcchhhcc-ccCCcccccccceeecCCcCchhhCcCcc
Confidence 8999999994 4578999999999999 789999988754
No 64
>PF13490 zf-HC2: Putative zinc-finger; PDB: 2Z2S_F 2Q1Z_B 3HUG_T.
Probab=69.92 E-value=3.1 Score=28.53 Aligned_cols=33 Identities=33% Similarity=0.680 Sum_probs=21.5
Q ss_pred HHHHHHHHHcCCCCCCCCCCCCCCCCCChhhhHHHHHhhhccChhhHH
Q 009277 420 FRRWLKKYAGGQFNWGGKFNATLPPTPPREQLMDRYWSHVVNCKSCNA 467 (538)
Q Consensus 420 fRrWl~~~~~g~~~w~~~~~~~lp~~~~~e~lldRy~~Ht~~C~sC~~ 467 (538)
++.++..|+.|. |++ .--.|...|..+|++|+.
T Consensus 4 ~~~~l~~y~dg~----------L~~-----~~~~~~~~HL~~C~~C~~ 36 (36)
T PF13490_consen 4 VRELLSAYLDGE----------LSP-----EERARLEAHLASCPSCRE 36 (36)
T ss_dssp -HHHHHHHHCT-----------S-H-----HHHHHHHHHHCT-HHHHH
T ss_pred HHHHHHHHHcCC----------CCH-----HHHHHHHHHHHcCHHhcC
Confidence 556677776553 322 456789999999999984
No 65
>TIGR02949 anti_SigH_actin anti-sigma factor, TIGR02949 family. This group of anti-sigma factors are associated in an apparent operon with a family of sigma-70 family sigma factors (TIGR02947). They and appear by homology, tree building, bidirectional best hits and one-to-a-genome distribution, to represent a conserved family. This family is restricted to the Actinobacteria.
Probab=67.69 E-value=8.4 Score=32.07 Aligned_cols=46 Identities=17% Similarity=0.295 Sum_probs=32.6
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCCCCCCCChhhhHHHHHhhhccChhhHHHHHHHHHHHHHH
Q 009277 419 GFRRWLKKYAGGQFNWGGKFNATLPPTPPREQLMDRYWSHVVNCKSCNAAHKSLSALEVTL 479 (538)
Q Consensus 419 ~fRrWl~~~~~g~~~w~~~~~~~lp~~~~~e~lldRy~~Ht~~C~sC~~Al~~~~~~~~~~ 479 (538)
.++..|..|+.|+ |++ .--.+++.|...|+.|+..+...++++.++
T Consensus 11 e~~~~l~~ylDge----------L~~-----~e~~~~e~HL~~C~~C~~e~~~~~~~~~~L 56 (84)
T TIGR02949 11 EVIDHLYEFLDGE----------MGP-----SDREQLRRHLEACPECLEEYGLEQAVKKLL 56 (84)
T ss_pred HHHHHHHHHHcCC----------CCH-----HHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence 3456677776553 332 457899999999999999998766654443
No 66
>PLN02518 pheophorbide a oxygenase
Probab=66.32 E-value=10 Score=42.62 Aligned_cols=80 Identities=15% Similarity=0.224 Sum_probs=56.8
Q ss_pred hhHHHHHhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHHHhhhcceE
Q 009277 450 QLMDRYWSHVVNCKSCNAAHKSLSALEVTLQVVSIASIGIVATTKQNAMSMATRTTIISFAVICFAASKWLSHFIYKTFH 529 (538)
Q Consensus 450 ~lldRy~~Ht~~C~sC~~Al~~~~~~~~~~~~~~~a~~g~~~~~~~~~~~~~~~~~~~~~a~l~~~~~~~~~~~~~~~f~ 529 (538)
+-+.+--.|=..|+.=.+.++.++.+-.++.++.++++++.......++.. ++.+++|++++++.++..+|++.+|.
T Consensus 458 dRy~~Ht~~C~SC~~Alk~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~f~~~~~~ 534 (539)
T PLN02518 458 DRFEQHTLNCSSCKGAYKAFQTLQKVLIGATVVFAATAGIPSDVQLRLILA---GLALISAASAYALKELEKNFVFVDYV 534 (539)
T ss_pred HHHHhhCccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHH---HHHHHHHHHHHHHHHHHhhceecCcc
Confidence 456677789999999999999999866666666656665553322222111 13466667788899999999999998
Q ss_pred Eec
Q 009277 530 YHD 532 (538)
Q Consensus 530 f~d 532 (538)
+.+
T Consensus 535 ~~~ 537 (539)
T PLN02518 535 HAE 537 (539)
T ss_pred Ccc
Confidence 765
No 67
>PRK10853 putative reductase; Provisional
Probab=64.78 E-value=4.3 Score=36.08 Aligned_cols=17 Identities=29% Similarity=0.503 Sum_probs=15.4
Q ss_pred hhccChhhHHHHHHHHH
Q 009277 458 HVVNCKSCNAAHKSLSA 474 (538)
Q Consensus 458 Ht~~C~sC~~Al~~~~~ 474 (538)
|..+|++|++|++.++.
T Consensus 6 ~~~~C~t~rkA~~~L~~ 22 (118)
T PRK10853 6 GIKNCDTIKKARRWLEA 22 (118)
T ss_pred cCCCCHHHHHHHHHHHH
Confidence 67899999999999985
No 68
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=61.54 E-value=5.1 Score=35.08 Aligned_cols=18 Identities=22% Similarity=0.281 Sum_probs=15.8
Q ss_pred hhccChhhHHHHHHHHHH
Q 009277 458 HVVNCKSCNAAHKSLSAL 475 (538)
Q Consensus 458 Ht~~C~sC~~Al~~~~~~ 475 (538)
|..+|++|++|++.++.-
T Consensus 5 ~~~~C~t~rkA~~~L~~~ 22 (112)
T cd03034 5 HNPRCSKSRNALALLEEA 22 (112)
T ss_pred ECCCCHHHHHHHHHHHHC
Confidence 678999999999999863
No 69
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=61.23 E-value=5.2 Score=35.25 Aligned_cols=17 Identities=18% Similarity=0.219 Sum_probs=15.2
Q ss_pred hhccChhhHHHHHHHHH
Q 009277 458 HVVNCKSCNAAHKSLSA 474 (538)
Q Consensus 458 Ht~~C~sC~~Al~~~~~ 474 (538)
|..+|++|++|++.++.
T Consensus 6 ~~p~C~~crkA~~~L~~ 22 (113)
T cd03033 6 EKPGCANNARQKALLEA 22 (113)
T ss_pred ECCCCHHHHHHHHHHHH
Confidence 67899999999999985
No 70
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=59.99 E-value=5.5 Score=34.57 Aligned_cols=17 Identities=35% Similarity=0.540 Sum_probs=13.7
Q ss_pred hhccChhhHHHHHHHHH
Q 009277 458 HVVNCKSCNAAHKSLSA 474 (538)
Q Consensus 458 Ht~~C~sC~~Al~~~~~ 474 (538)
|..+|++|++|++.++.
T Consensus 2 ~~~~C~t~rka~~~L~~ 18 (110)
T PF03960_consen 2 GNPNCSTCRKALKWLEE 18 (110)
T ss_dssp E-TT-HHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHH
Confidence 56899999999999996
No 71
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=59.32 E-value=6 Score=35.16 Aligned_cols=17 Identities=29% Similarity=0.469 Sum_probs=15.7
Q ss_pred hhccChhhHHHHHHHHH
Q 009277 458 HVVNCKSCNAAHKSLSA 474 (538)
Q Consensus 458 Ht~~C~sC~~Al~~~~~ 474 (538)
|..+|.+|++|+++++.
T Consensus 7 ~~p~C~t~rka~~~L~~ 23 (117)
T COG1393 7 GNPNCSTCRKALAWLEE 23 (117)
T ss_pred eCCCChHHHHHHHHHHH
Confidence 67899999999999986
No 72
>PRK10026 arsenate reductase; Provisional
Probab=58.64 E-value=6.1 Score=36.36 Aligned_cols=17 Identities=12% Similarity=0.286 Sum_probs=15.1
Q ss_pred hhccChhhHHHHHHHHH
Q 009277 458 HVVNCKSCNAAHKSLSA 474 (538)
Q Consensus 458 Ht~~C~sC~~Al~~~~~ 474 (538)
|-.+|++|++|+++++.
T Consensus 8 ~~p~Cst~RKA~~wL~~ 24 (141)
T PRK10026 8 HNPACGTSRNTLEMIRN 24 (141)
T ss_pred eCCCCHHHHHHHHHHHH
Confidence 56799999999999984
No 73
>PF14015 DUF4231: Protein of unknown function (DUF4231)
Probab=57.76 E-value=76 Score=27.18 Aligned_cols=27 Identities=7% Similarity=-0.018 Sum_probs=15.4
Q ss_pred HHHhhhccChhhHHHHHHHHHHHHHHH
Q 009277 454 RYWSHVVNCKSCNAAHKSLSALEVTLQ 480 (538)
Q Consensus 454 Ry~~Ht~~C~sC~~Al~~~~~~~~~~~ 480 (538)
+|+..-+...+|++-++.++.+..++.
T Consensus 3 ~~~~y~~~a~~~q~~~~~~~~~~i~~~ 29 (112)
T PF14015_consen 3 QIDWYDKKARRAQRRYRRLRIASIILS 29 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455666777777776654433
No 74
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=56.04 E-value=7.4 Score=33.75 Aligned_cols=17 Identities=35% Similarity=0.534 Sum_probs=15.2
Q ss_pred hhccChhhHHHHHHHHH
Q 009277 458 HVVNCKSCNAAHKSLSA 474 (538)
Q Consensus 458 Ht~~C~sC~~Al~~~~~ 474 (538)
|..+|++|++|++.++.
T Consensus 5 ~~~~C~~crka~~~L~~ 21 (105)
T cd03035 5 GIKNCDTVKKARKWLEA 21 (105)
T ss_pred eCCCCHHHHHHHHHHHH
Confidence 66799999999999985
No 75
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=54.07 E-value=8.1 Score=33.95 Aligned_cols=17 Identities=18% Similarity=0.280 Sum_probs=15.2
Q ss_pred hhccChhhHHHHHHHHH
Q 009277 458 HVVNCKSCNAAHKSLSA 474 (538)
Q Consensus 458 Ht~~C~sC~~Al~~~~~ 474 (538)
|-.+|++|++|++.++.
T Consensus 5 ~~~~C~t~rkA~~~L~~ 21 (114)
T TIGR00014 5 HNPRCSKSRNTLALLED 21 (114)
T ss_pred ECCCCHHHHHHHHHHHH
Confidence 56799999999999986
No 76
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=51.40 E-value=9.8 Score=34.48 Aligned_cols=17 Identities=35% Similarity=0.696 Sum_probs=15.5
Q ss_pred hhccChhhHHHHHHHHH
Q 009277 458 HVVNCKSCNAAHKSLSA 474 (538)
Q Consensus 458 Ht~~C~sC~~Al~~~~~ 474 (538)
|..+|++|++|++.++.
T Consensus 6 ~~~~C~~crkA~~~L~~ 22 (132)
T PRK13344 6 TISSCTSCKKAKTWLNA 22 (132)
T ss_pred eCCCCHHHHHHHHHHHH
Confidence 67899999999999985
No 77
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=48.19 E-value=11 Score=33.82 Aligned_cols=17 Identities=18% Similarity=0.280 Sum_probs=14.9
Q ss_pred hhccChhhHHHHHHHHH
Q 009277 458 HVVNCKSCNAAHKSLSA 474 (538)
Q Consensus 458 Ht~~C~sC~~Al~~~~~ 474 (538)
|-.+|++|++|++.++.
T Consensus 7 ~~p~Cst~RKA~~~L~~ 23 (126)
T TIGR01616 7 EKPGCANNARQKAALKA 23 (126)
T ss_pred eCCCCHHHHHHHHHHHH
Confidence 55799999999999984
No 78
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=47.45 E-value=12 Score=32.63 Aligned_cols=17 Identities=29% Similarity=0.593 Sum_probs=15.2
Q ss_pred hhccChhhHHHHHHHHH
Q 009277 458 HVVNCKSCNAAHKSLSA 474 (538)
Q Consensus 458 Ht~~C~sC~~Al~~~~~ 474 (538)
|...|++|++|.+.++.
T Consensus 5 ~~~~C~~c~ka~~~L~~ 21 (111)
T cd03036 5 EYPKCSTCRKAKKWLDE 21 (111)
T ss_pred ECCCCHHHHHHHHHHHH
Confidence 56799999999999986
No 79
>PF09740 DUF2043: Uncharacterized conserved protein (DUF2043); InterPro: IPR018610 This entry consists of uncharacterised proteins of unknown function. They contain three conserved cysteines and a {CP}{y/l}{HG} motif.
Probab=47.09 E-value=11 Score=33.13 Aligned_cols=36 Identities=31% Similarity=0.613 Sum_probs=23.5
Q ss_pred CeEEEEecCCCCCCCCCCCCcccC-CCeEEeccCCcEEeC
Q 009277 122 NEWRVFADACPHRLAPLSEGRIDQ-WGRLQCVYHGWCFSG 160 (538)
Q Consensus 122 G~~~a~~d~CpHRga~Ls~G~v~~-~~~l~CpYHGW~Fd~ 160 (538)
|++--..-.|. |||..|.+.. .+.+.||+||=--+.
T Consensus 63 g~~e~v~~~Cr---APL~~G~LC~RrD~~kCPfHG~IIpR 99 (110)
T PF09740_consen 63 GEFEPVPHACR---APLPNGGLCPRRDRKKCPFHGKIIPR 99 (110)
T ss_pred CccCcCchhhc---CCCCCCCcCCccCcccCCCCCcccCC
Confidence 45555555564 5777777652 247899999976653
No 80
>PRK12559 transcriptional regulator Spx; Provisional
Probab=41.86 E-value=16 Score=32.96 Aligned_cols=17 Identities=29% Similarity=0.567 Sum_probs=15.1
Q ss_pred hhccChhhHHHHHHHHH
Q 009277 458 HVVNCKSCNAAHKSLSA 474 (538)
Q Consensus 458 Ht~~C~sC~~Al~~~~~ 474 (538)
|..+|++|++|++.++.
T Consensus 6 ~~~~C~~crkA~~~L~~ 22 (131)
T PRK12559 6 TTASCASCRKAKAWLEE 22 (131)
T ss_pred eCCCChHHHHHHHHHHH
Confidence 56799999999999985
No 81
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=39.56 E-value=19 Score=31.52 Aligned_cols=17 Identities=29% Similarity=0.557 Sum_probs=15.2
Q ss_pred hhccChhhHHHHHHHHH
Q 009277 458 HVVNCKSCNAAHKSLSA 474 (538)
Q Consensus 458 Ht~~C~sC~~Al~~~~~ 474 (538)
|..+|+.|++|++.++.
T Consensus 6 ~~~~C~~c~ka~~~L~~ 22 (115)
T cd03032 6 TSPSCSSCRKAKQWLEE 22 (115)
T ss_pred eCCCCHHHHHHHHHHHH
Confidence 56899999999999986
No 82
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=37.05 E-value=22 Score=30.37 Aligned_cols=18 Identities=22% Similarity=0.198 Sum_probs=15.3
Q ss_pred hhccChhhHHHHHHHHHH
Q 009277 458 HVVNCKSCNAAHKSLSAL 475 (538)
Q Consensus 458 Ht~~C~sC~~Al~~~~~~ 475 (538)
|..+|++|++|++.++..
T Consensus 5 ~~~~C~~c~ka~~~L~~~ 22 (105)
T cd02977 5 GNPNCSTSRKALAWLEEH 22 (105)
T ss_pred ECCCCHHHHHHHHHHHHc
Confidence 456899999999999863
No 83
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=37.00 E-value=22 Score=32.09 Aligned_cols=17 Identities=29% Similarity=0.520 Sum_probs=15.2
Q ss_pred hhccChhhHHHHHHHHH
Q 009277 458 HVVNCKSCNAAHKSLSA 474 (538)
Q Consensus 458 Ht~~C~sC~~Al~~~~~ 474 (538)
|..+|+.|++|++.++.
T Consensus 6 ~~~~C~~C~ka~~~L~~ 22 (131)
T PRK01655 6 TSPSCTSCRKAKAWLEE 22 (131)
T ss_pred eCCCChHHHHHHHHHHH
Confidence 56899999999999985
No 84
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=36.83 E-value=22 Score=31.12 Aligned_cols=17 Identities=35% Similarity=0.659 Sum_probs=15.2
Q ss_pred hhccChhhHHHHHHHHH
Q 009277 458 HVVNCKSCNAAHKSLSA 474 (538)
Q Consensus 458 Ht~~C~sC~~Al~~~~~ 474 (538)
|...|++|++|++.++.
T Consensus 5 ~~~~C~~c~ka~~~L~~ 21 (117)
T TIGR01617 5 GSPNCTTCKKARRWLEA 21 (117)
T ss_pred eCCCCHHHHHHHHHHHH
Confidence 56789999999999986
No 85
>KOG4684 consensus Uncharacterized conserved protein, contains C4-type Zn-finger [General function prediction only]
Probab=30.44 E-value=90 Score=30.70 Aligned_cols=19 Identities=16% Similarity=0.457 Sum_probs=16.1
Q ss_pred hhHHHHHhhhccChhhHHH
Q 009277 450 QLMDRYWSHVVNCKSCNAA 468 (538)
Q Consensus 450 ~lldRy~~Ht~~C~sC~~A 468 (538)
=|++.|+.--..|++|++-
T Consensus 180 FLfnt~tnaLArCPHCrKv 198 (275)
T KOG4684|consen 180 FLFNTLTNALARCPHCRKV 198 (275)
T ss_pred eehhhHHHHHhcCCcccch
Confidence 4788888888899999875
No 86
>PF07627 PSCyt3: Protein of unknown function (DUF1588); InterPro: IPR013039 A region of similarity shared by several Rhodopirellula baltica cytochrome-like proteins that are predicted to be secreted. These proteins also contain IPR011478 from INTERPRO, IPR013036 from INTERPRO, IPR013042 from INTERPRO and IPR013043 from INTERPRO.
Probab=29.70 E-value=99 Score=26.81 Aligned_cols=48 Identities=23% Similarity=0.303 Sum_probs=26.1
Q ss_pred HHHHHHHcCCCCCCC-CCCCCCCCCC-ChhhhHHHHHhhh--ccChhhHHHH
Q 009277 422 RWLKKYAGGQFNWGG-KFNATLPPTP-PREQLMDRYWSHV--VNCKSCNAAH 469 (538)
Q Consensus 422 rWl~~~~~g~~~w~~-~~~~~lp~~~-~~e~lldRy~~Ht--~~C~sC~~Al 469 (538)
+|+.+.+-+++.=.. +...++++.. ...-+=+|+..|+ ..|.+|=+-+
T Consensus 28 ~~v~~~lLc~~~ppPP~~v~~~~~~~~~~~T~Re~~~~h~~~~~Ca~CH~~i 79 (101)
T PF07627_consen 28 VWVRERLLCQPPPPPPPNVPALPPDPPDQLTNRERLEQHTENPACASCHRKI 79 (101)
T ss_pred HHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCHHHHHHhhcCCCcHHHHhhhh
Confidence 466665554432111 1122333332 2225778889999 6799997643
No 87
>KOG4684 consensus Uncharacterized conserved protein, contains C4-type Zn-finger [General function prediction only]
Probab=28.38 E-value=11 Score=36.80 Aligned_cols=19 Identities=47% Similarity=0.810 Sum_probs=16.0
Q ss_pred hHHHHHhhhccChhhHHHH
Q 009277 451 LMDRYWSHVVNCKSCNAAH 469 (538)
Q Consensus 451 lldRy~~Ht~~C~sC~~Al 469 (538)
|--+-+||++.|.||..|-
T Consensus 92 ~egk~~QHVVKC~~CnEAT 110 (275)
T KOG4684|consen 92 LEGKNQQHVVKCHSCNEAT 110 (275)
T ss_pred cccccceeeEeecccCccc
Confidence 4457899999999999874
No 88
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=26.33 E-value=45 Score=26.23 Aligned_cols=17 Identities=24% Similarity=0.497 Sum_probs=14.5
Q ss_pred hccChhhHHHHHHHHHH
Q 009277 459 VVNCKSCNAAHKSLSAL 475 (538)
Q Consensus 459 t~~C~sC~~Al~~~~~~ 475 (538)
...|+.|++|.+.++..
T Consensus 8 ~~~C~~C~ka~~~L~~~ 24 (73)
T cd03027 8 RLGCEDCTAVRLFLREK 24 (73)
T ss_pred cCCChhHHHHHHHHHHC
Confidence 46899999999999863
No 89
>PF04066 MrpF_PhaF: Multiple resistance and pH regulation protein F (MrpF / PhaF); InterPro: IPR007208 Members of the PhaF/MrpF family are predicted to be integral membrane proteins with three transmembrane regions, involved in regulation of pH. PhaF is part of a potassium efflux system involved in pH regulation. It is also involved in symbiosis in Rhizobium meliloti (Sinorhizobium meliloti) []. MrpF is a part of a Na+/H+ antiporter complex, also involved in pH homeostasis. MrpF is thought to be an efflux system for Na+ and cholate []. The Mrp system in Gram-positive species may also have primary energisation capacities [].; GO: 0015075 ion transmembrane transporter activity, 0034220 ion transmembrane transport, 0016021 integral to membrane
Probab=26.05 E-value=2.6e+02 Score=21.16 Aligned_cols=22 Identities=14% Similarity=0.422 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhc
Q 009277 505 TIISFAVICFAASKWLSHFIYK 526 (538)
Q Consensus 505 ~~~~~a~l~~~~~~~~~~~~~~ 526 (538)
..++.|+++|.+.--+++|+++
T Consensus 34 ialv~all~Fvgtva~arfl~r 55 (55)
T PF04066_consen 34 IALVYALLGFVGTVAFARFLER 55 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHcC
Confidence 5678888999999888888875
No 90
>COG5660 Predicted integral membrane protein [Function unknown]
Probab=23.89 E-value=85 Score=30.85 Aligned_cols=17 Identities=29% Similarity=0.647 Sum_probs=14.8
Q ss_pred hhccChhhHHHHHHHHH
Q 009277 458 HVVNCKSCNAAHKSLSA 474 (538)
Q Consensus 458 Ht~~C~sC~~Al~~~~~ 474 (538)
|-++|++|+.-+..+..
T Consensus 30 HL~nCsaCR~~y~~vAe 46 (238)
T COG5660 30 HLGNCSACRAWYDQVAE 46 (238)
T ss_pred HHhcCHHHHHHHHHHHH
Confidence 99999999998877654
No 91
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=23.88 E-value=3.1e+02 Score=25.84 Aligned_cols=7 Identities=14% Similarity=0.629 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 009277 505 TIISFAV 511 (538)
Q Consensus 505 ~~~~~a~ 511 (538)
+++|+++
T Consensus 44 ~~lAlg~ 50 (191)
T PF04156_consen 44 ALLALGV 50 (191)
T ss_pred HHHHHHH
Confidence 4444333
No 92
>PF10039 DUF2275: Predicted integral membrane protein (DUF2275); InterPro: IPR018734 This domain, found in various hypothetical bacterial proteins and in the RNA polymerase sigma factor, has no known function.
Probab=22.78 E-value=2.6e+02 Score=27.76 Aligned_cols=38 Identities=5% Similarity=0.057 Sum_probs=18.7
Q ss_pred hhHHHHHhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 009277 450 QLMDRYWSHVVNCKSCNAAHKSLSALEVTLQVVSIASIGI 489 (538)
Q Consensus 450 ~lldRy~~Ht~~C~sC~~Al~~~~~~~~~~~~~~~a~~g~ 489 (538)
.|.++|..+...=++=++ ..+..+++-....+++.+++
T Consensus 7 Dl~~~~~a~~~~~~~~~~--~~~~~~~k~~r~~Al~alil 44 (218)
T PF10039_consen 7 DLNAAWMAFNEKLPNNKK--GVFRMWRKYKRAIALAALIL 44 (218)
T ss_pred cHHHHHHHHhhhcccccc--cHHHHHHHHHHHHHHHHHHH
Confidence 455566666555553333 44444444444444444443
No 93
>COG5415 Predicted integral membrane metal-binding protein [General function prediction only]
Probab=22.61 E-value=3.4e+02 Score=26.73 Aligned_cols=29 Identities=10% Similarity=0.102 Sum_probs=22.4
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 009277 498 MSMATRTTIISFAVICFAASKWLSHFIYK 526 (538)
Q Consensus 498 ~~~~~~~~~~~~a~l~~~~~~~~~~~~~~ 526 (538)
.+.-+++++.+++++++...||+.-+++.
T Consensus 67 y~~~~~It~~llgs~slymfrwal~~lye 95 (251)
T COG5415 67 YRPYLVITALLLGSGSLYMFRWALTKLYE 95 (251)
T ss_pred cchhHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 35566778888888899999998777764
No 94
>PF11286 DUF3087: Protein of unknown function (DUF3087); InterPro: IPR021438 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=22.13 E-value=2.8e+02 Score=26.26 Aligned_cols=14 Identities=14% Similarity=0.017 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHH
Q 009277 505 TIISFAVICFAASK 518 (538)
Q Consensus 505 ~~~~~a~l~~~~~~ 518 (538)
++++++++|.+..+
T Consensus 55 GVil~~~~~~~~l~ 68 (165)
T PF11286_consen 55 GVILGLLLTSALLR 68 (165)
T ss_pred HHHHHHHHHHHHHH
Confidence 45555555555544
No 95
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=21.21 E-value=2.2e+02 Score=22.23 Aligned_cols=17 Identities=12% Similarity=0.251 Sum_probs=12.5
Q ss_pred ccC-hhhHHHHHHHHHHH
Q 009277 460 VNC-KSCNAAHKSLSALE 476 (538)
Q Consensus 460 ~~C-~sC~~Al~~~~~~~ 476 (538)
.-| +.|+..+..-++-.
T Consensus 18 ~fCS~~C~~~~~k~qk~~ 35 (59)
T PF09889_consen 18 SFCSPKCREEYRKRQKRM 35 (59)
T ss_pred hhhCHHHHHHHHHHHHHH
Confidence 458 48999988877643
No 96
>PF09788 Tmemb_55A: Transmembrane protein 55A; InterPro: IPR019178 Members of this family catalyse the hydrolysis of the 4-position phosphate of phosphatidylinositol 4,5-bisphosphate, in the reaction: 1-phosphatidyl-myo-inositol 4,5-bisphosphate + H(2)O = 1-phosphatidyl-1D-myo-inositol 5-phosphate + phosphate.
Probab=20.93 E-value=15 Score=36.86 Aligned_cols=20 Identities=35% Similarity=0.755 Sum_probs=17.3
Q ss_pred hhHHHHHhhhccChhhHHHH
Q 009277 450 QLMDRYWSHVVNCKSCNAAH 469 (538)
Q Consensus 450 ~lldRy~~Ht~~C~sC~~Al 469 (538)
.+-++.+||++.|..|+.|-
T Consensus 76 ~i~gk~~QhVVkC~~CnEAT 95 (256)
T PF09788_consen 76 DIEGKMHQHVVKCSVCNEAT 95 (256)
T ss_pred cccCccceeeEECCCCCccc
Confidence 46679999999999999874
No 97
>PF05055 DUF677: Protein of unknown function (DUF677); InterPro: IPR007749 This entry contains proteins belonging to the UPF0496 family, found in plants. This family includes AT14A like proteins from Arabidopsis thaliana. At14a contains a small domain that has sequence similarities to integrins from fungi, insects and humans. Transcripts of At14a are found in all Arabidopsis tissues and the protein localises partly to the plasma membrane [].
Probab=20.34 E-value=3.3e+02 Score=28.84 Aligned_cols=8 Identities=25% Similarity=0.696 Sum_probs=3.8
Q ss_pred HHHHHHhh
Q 009277 517 SKWLSHFI 524 (538)
Q Consensus 517 ~~~~~~~~ 524 (538)
.+|+....
T Consensus 224 gkw~~~~~ 231 (336)
T PF05055_consen 224 GKWCGSLW 231 (336)
T ss_pred hHHHHHHH
Confidence 44655443
Done!