Query 009277
Match_columns 538
No_of_seqs 391 out of 2108
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 22:51:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009277.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009277hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gke_A DDMC; rieske cluster, n 100.0 5E-53 1.7E-57 441.0 27.0 320 84-430 4-337 (349)
2 2zyl_A Possible oxidoreductase 100.0 1.3E-44 4.4E-49 382.3 26.1 310 81-430 18-339 (386)
3 1z01_A 2-OXO-1,2-dihydroquinol 100.0 3.7E-44 1.2E-48 385.5 29.4 336 73-439 26-416 (446)
4 3n0q_A Putative aromatic-ring 100.0 1.1E-44 3.7E-49 384.5 22.4 323 73-430 26-399 (409)
5 3vca_A Ring-hydroxylating diox 100.0 4.9E-44 1.7E-48 379.8 25.3 322 73-430 28-402 (412)
6 2de6_A Terminal oxygenase comp 100.0 9.1E-44 3.1E-48 376.6 23.5 316 78-431 18-376 (392)
7 3gkq_A Terminal oxygenase comp 100.0 2E-40 6.7E-45 345.6 25.4 317 78-430 21-376 (389)
8 3gcf_A Terminal oxygenase comp 100.0 2E-40 6.7E-45 346.5 25.1 316 77-430 23-379 (394)
9 2gbw_A Biphenyl 2,3-dioxygenas 100.0 7.3E-37 2.5E-41 329.5 19.8 188 73-262 22-217 (454)
10 2bmo_A Oxygenase-alpha NBDO; n 100.0 4.2E-37 1.4E-41 330.8 16.3 187 73-263 21-217 (447)
11 2b1x_A Naphthalene dioxygenase 100.0 2.3E-35 7.8E-40 319.1 25.0 188 73-262 30-226 (470)
12 1uli_A Biphenyl dioxygenase la 100.0 2.2E-34 7.5E-39 310.6 14.8 186 73-261 40-234 (460)
13 3gzx_A Biphenyl dioxygenase su 100.0 6.8E-35 2.3E-39 313.0 10.4 186 73-262 42-244 (457)
14 2qpz_A Naphthalene 1,2-dioxyge 99.9 7.3E-26 2.5E-30 195.1 13.3 101 87-202 2-103 (103)
15 2i7f_A Ferredoxin component of 99.9 6.3E-26 2.1E-30 197.3 10.9 102 88-204 3-106 (108)
16 2de6_D Ferredoxin component of 99.9 6.8E-26 2.3E-30 199.4 11.2 104 87-205 3-108 (115)
17 1fqt_A Rieske-type ferredoxin 99.9 1.7E-25 5.8E-30 195.8 13.5 103 87-204 4-108 (112)
18 1vm9_A Toluene-4-monooxygenase 99.9 1.5E-25 5.2E-30 195.8 12.3 103 88-205 1-105 (111)
19 3dqy_A Toluene 1,2-dioxygenase 99.9 1.1E-25 3.6E-30 195.1 10.6 101 88-203 1-102 (106)
20 2jo6_A Nitrite reductase [NAD( 99.9 2.1E-25 7.2E-30 195.5 12.5 102 87-202 5-112 (113)
21 2jza_A Nitrite reductase [NAD( 99.9 4.3E-25 1.5E-29 198.5 12.9 107 87-206 2-113 (130)
22 3gce_A Ferredoxin component of 99.9 6.8E-25 2.3E-29 194.8 13.1 103 87-204 9-114 (121)
23 3c0d_A Putative nitrite reduct 99.9 3.2E-25 1.1E-29 196.3 10.8 104 87-204 4-112 (119)
24 4aiv_A Probable nitrite reduct 99.9 2.2E-25 7.6E-30 197.3 8.8 102 87-202 8-116 (119)
25 3d89_A Rieske domain-containin 99.9 1.4E-25 4.9E-30 208.0 7.1 118 85-205 13-137 (157)
26 1rie_A Rieske iron-sulfur prot 99.8 5.4E-20 1.9E-24 165.0 11.0 97 88-199 5-128 (129)
27 1rfs_A Rieske protein; iron-su 99.8 1.9E-20 6.4E-25 170.1 6.9 101 87-202 20-124 (139)
28 1g8k_B Arsenite oxidase; molyb 99.8 3.2E-19 1.1E-23 160.8 10.6 98 88-200 7-119 (133)
29 3azc_A Cytochrome B6-F complex 99.6 2.1E-20 7.3E-25 168.1 0.0 97 94-205 22-122 (133)
30 4aay_B AROB; oxidoreductase, r 99.7 1.7E-18 5.8E-23 162.8 8.6 97 89-200 51-161 (175)
31 1pp9_E Ubiquinol-cytochrome C 99.7 1.2E-16 4E-21 152.9 10.4 95 92-199 75-195 (196)
32 2qjy_C Ubiquinol-cytochrome C 99.7 1.8E-16 6.2E-21 150.7 11.6 98 89-199 49-186 (187)
33 2nwf_A Ubiquinol-cytochrome C 99.7 1.6E-16 5.6E-21 144.3 10.5 93 94-199 7-140 (141)
34 3cx5_E Cytochrome B-C1 complex 99.7 2.2E-16 7.6E-21 149.8 11.4 97 88-199 62-184 (185)
35 1nyk_A Rieske iron-sulfur prot 99.7 1.2E-16 4.2E-21 148.8 9.0 68 124-204 80-149 (165)
36 1vf5_D Rieske iron-sulfur prot 99.6 9.6E-17 3.3E-21 151.7 1.6 92 95-201 70-164 (179)
37 1jm1_A Rieske iron-sulfur prot 99.5 3.7E-15 1.3E-19 143.3 2.8 86 104-202 56-167 (204)
38 3hug_B Probable conserved memb 55.1 6.3 0.00022 33.4 2.5 48 419-481 26-73 (108)
39 3fz4_A Putative arsenate reduc 44.9 8.8 0.0003 32.7 1.9 18 458-475 9-26 (120)
40 3f0i_A Arsenate reductase; str 42.9 10 0.00034 32.3 1.9 17 458-474 10-26 (119)
41 3gkx_A Putative ARSC family re 40.8 11 0.00038 32.1 1.8 17 458-474 10-26 (120)
42 3rdw_A Putative arsenate reduc 38.1 12 0.00042 31.8 1.7 17 458-474 11-27 (121)
43 2q1z_B Anti-sigma factor CHRR, 35.3 22 0.00077 32.8 3.1 27 450-476 23-49 (195)
44 3l78_A Regulatory protein SPX; 34.6 16 0.00055 31.0 1.9 17 458-474 6-22 (120)
45 1s3c_A Arsenate reductase; ARS 34.4 16 0.00055 32.0 1.9 17 458-474 8-24 (141)
46 1rw1_A Conserved hypothetical 34.0 17 0.00057 30.4 1.9 17 458-474 6-22 (114)
47 2kok_A Arsenate reductase; bru 32.0 19 0.00064 30.4 1.9 18 458-475 11-28 (120)
48 1z3e_A Regulatory protein SPX; 22.0 36 0.0012 29.1 1.8 18 458-475 7-24 (132)
No 1
>3gke_A DDMC; rieske cluster, non-heme mononuclear iron, oxygenase, oxidoreductase; 1.75A {Stenotrophomonas maltophilia} PDB: 3gb4_A 3gl0_A* 3gl2_A* 3gob_A* 3gte_A 3gts_A*
Probab=100.00 E-value=5e-53 Score=440.98 Aligned_cols=320 Identities=20% Similarity=0.305 Sum_probs=244.5
Q ss_pred cccCCeEEeeecCCCCCCCcEEEEECCEEEEEEEeCCCCeEEEEecCCCCCCCCCCCCcccCCCeEEeccCCcEEeCCCC
Q 009277 84 DWFSQWYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCVYHGWCFSGSGD 163 (538)
Q Consensus 84 ~~~~~W~~v~~~~dL~~g~~~~~~l~g~~lvv~r~~~~G~~~a~~d~CpHRga~Ls~G~v~~~~~l~CpYHGW~Fd~~G~ 163 (538)
.+++.||+||+++|| +|+++.++++|++|+|||+.+ |+++|++|+|||||++|+.|+++ ++.|+||||||+||.+|+
T Consensus 4 ~~~~~W~~v~~~~el-~g~~~~~~~~g~~vvv~R~~~-G~v~a~~n~CpHrg~~L~~G~~~-~~~i~CpyHgw~fd~~G~ 80 (349)
T 3gke_A 4 FVRNAWYVAALPEEL-SEKPLGRTILDTPLALYRQPD-GVVAALLDICPHRFAPLSDGILV-NGHLQCPYHGLEFDGGGQ 80 (349)
T ss_dssp CCCSSCEEEECGGGC-CSSCEEEEETTEEEEEEECTT-SCEEEEESSCTTTCCCGGGCEEE-TTEEECTTTCCEECTTCC
T ss_pred ccccccEEEEEHHHC-CCCeEEEEECCEEEEEEEcCC-CcEEEEeCcCCCCCcCCccCCcc-ceEEEECCCCCEEcCCCC
Confidence 467999999999999 899999999999999999876 89999999999999999999987 479999999999999999
Q ss_pred cccCCCCCCCCCCCCCccccccceeeEEEEcCeEEEccCCCCCcccccccCCCCCCCCCCCCCCceeeeeeEEeechHHH
Q 009277 164 CKFIPQAPPDGPPVHTFEKACAAVYPSTVQHDIVWFWPNIAPRYKDIIKTKKPPHIPELDDPSFTKLFGNRDIPYGYEVL 243 (538)
Q Consensus 164 c~~iP~~~~~~~~~~~~~~~~l~~~pv~~~~G~IwV~~~~~~~~~d~~~~~~~p~~p~l~~~~~~~~~~~~~~~~~w~~l 243 (538)
|+.+|+... ..+++.+|++|||++++|+||||+++++.. + ...+|.++++++++|.......++++|||++
T Consensus 81 ~~~~P~~~~-----~~~~~~~l~~~~v~~~~G~V~v~~~~~~~~-~---~~~~p~~~~~~~~~~~~~~~~~~~~~nwk~~ 151 (349)
T 3gke_A 81 CVHNPHGNG-----ARPASLNVRSFPVVERDALIWIWPGDPALA-D---PGAIPDFGCRVDPAYRTVGGYGHVDCNYKLL 151 (349)
T ss_dssp EEECCSTTC-----CCCGGGCCCBCCEEEETTEEEECCSCGGGC-C---GGGSCCCGGGGCTTSEEEEEEEEESSCHHHH
T ss_pred ccccCcccc-----ccccccccceeeEEEECCEEEEeeCCCCCC-c---ccccCCccccCCCCCEEEeEEEEEecCHHhH
Confidence 999996221 134578899999999999999999865322 1 1235666667777786555667899999999
Q ss_pred HHhcCCCCCCccccccccccCC---CceEEeccCCe-EEEEEEeccCCCC--------CCCCc-ccceeEEecceEEEEe
Q 009277 244 LENLMDPAHVPYAHYGLMRTRK---PKVKLDREGGR-PVEMSVNKIDING--------FIGKQ-EWGSSKFLAPCIFFAY 310 (538)
Q Consensus 244 ~EN~lD~~H~~~~H~~~~~~~~---p~~~~~~~~~~-~~~~~~~~~~~~G--------f~~~~-~~~~~~f~~P~~~~~~ 310 (538)
+||++|+||++++|+++++... ...+++.+++. .....+......+ ..+.. .+...+|.+||++...
T Consensus 152 ~EN~~D~~H~~~~H~~~~~~~~~~~~~~~v~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~P~~~~~~ 231 (349)
T 3gke_A 152 VDNLMDLGHAQYVHRANAQTDAFDRLEREVIVGDGEIQALMKIPGGTPSVLMAKFLRGANTPVDAWNDIRWNKVSAMLNF 231 (349)
T ss_dssp HHHHHCGGGHHHHTHHHHCCTTGGGCEEEEEECSSEEEEEEEEEEECCCHHHHHHTTTCCSCEEEEEEEEEETTTEEEEE
T ss_pred HHhccccccchhccchhhcCccccCCCCEEEEcCCEEEEEEEecCCCCChHHHhhcccCCCCceeEEEEEEECCEEEEEE
Confidence 9999999999999999998643 22344444332 2222233222211 11111 3467899999987765
Q ss_pred eccccccccCCCcccccccccccccEEEEEEEEECCCCeEEEEEEeecCccccccccchhHHHHHhhhHHH-hhhHHHHH
Q 009277 311 TDLMKDQENGSASSAGAEKKLEQQRAALIFICVPVSPGHSRLIWAFPRNFQTWIDKVVPRWIFHIGQNLIL-DSDLYLLH 389 (538)
Q Consensus 311 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~Pv~pg~tr~~~~~~r~~~~~~~~~~prw~~h~~~~~Vl-~eD~~ile 389 (538)
....+.+ .....+....+++++||+++++||++|.+.|||..+...+.+.|. .++++|| +||+.|||
T Consensus 232 ~~~~~~g----------~p~~~~~~~~~~~~~tP~s~~~tr~~~~~~rn~~~~d~~~~~~~~--~~~~~if~~ED~~ile 299 (349)
T 3gke_A 232 IAVAPEG----------TPKEQSIHSRGTHILTPETEASCHYFFGSSRNFGIDDPEMDGVLR--SWQAQALVKEDKVVVE 299 (349)
T ss_dssp EEEEETT----------SCGGGSEEEEEEEEEEEEETTEEEEEEEEEESSSTTCHHHHHHHH--HHHHHHTTTHHHHHHH
T ss_pred EecccCC----------CCCCCceEEEEEEEEecCCCCeEEEEEEEEecCccCchhhhHHHH--HHHhhhhhhhhHHHHH
Confidence 4332211 111233457788999999999999999999999876555555553 4578898 99999999
Q ss_pred HHHhhhhccCCcccccccccCCccchHHHHHHHHHHHHHcC
Q 009277 390 VEERKIMDVGPANWQKACFVPTKADALVVGFRRWLKKYAGG 430 (538)
Q Consensus 390 ~qq~~l~~~g~~~w~~~~~~p~~aD~~v~~fRrWl~~~~~g 430 (538)
.||+++...+. ...+++++++|+++++|||||++++..
T Consensus 300 ~Qq~~l~~~~~---~~~~~~~~~~D~~~v~~Rr~l~~l~~~ 337 (349)
T 3gke_A 300 AIERRRAYVEA---NGIRPAMLSCDEAAVRVSREIEKLEQL 337 (349)
T ss_dssp HHHHTHHHHHH---TTCCCCCCGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCCc---cccccccccccHHHHHHHHHHHHHHHH
Confidence 99999876421 223468999999999999999999864
No 2
>2zyl_A Possible oxidoreductase; KSHA, cholesterol, rieske; 2.30A {Mycobacterium tuberculosis}
Probab=100.00 E-value=1.3e-44 Score=382.25 Aligned_cols=310 Identities=21% Similarity=0.327 Sum_probs=218.6
Q ss_pred ccccccCCeEEeeecCCCCCCCcEEEEECCEEEEEEEeCCCCeEEEEecCCCCCCCCCCCCcccCCCeEEeccCCcEEeC
Q 009277 81 EKFDWFSQWYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCVYHGWCFSG 160 (538)
Q Consensus 81 ~~f~~~~~W~~v~~~~dL~~g~~~~~~l~g~~lvv~r~~~~G~~~a~~d~CpHRga~Ls~G~v~~~~~l~CpYHGW~Fd~ 160 (538)
...+|.+.||+|++++||++|+++.++++|++|+|||+.+ |+++||+|+|||||++|+.|++++ +.|+||||||+||.
T Consensus 18 ~~~~f~~~W~~v~~~~el~~g~~~~~~~~g~~vvl~R~~~-G~v~a~~n~CpHrga~L~~g~~~~-~~i~CpyHgw~f~~ 95 (386)
T 2zyl_A 18 LPTRYARGWHCLGVAKDYLEGKPHGVEAFGTKLVVFADSH-GDLKVLDGYCRHMGGDLSEGTVKG-DEVACPFHDWRWGG 95 (386)
T ss_dssp CCSSCCSEEEEEEEGGGGCSSSCEEEEETTEEEEEEECTT-SCEEEEESBCTTTCCBGGGSEEET-TEEECTTTCCEEET
T ss_pred CchhhhcceEEEEEHHHCCCCCeEEEEECCeEEEEEECCC-CCEEEEcCcCCCCCCCCCCCcccC-CEEEeCCCCCEECC
Confidence 3467889999999999999999999999999999999876 899999999999999999999874 79999999999999
Q ss_pred CCCcccCCCCCCCCCCCCCccccccceeeEEEEcCeEEEccCCCCCcccccccCCCCCCCCCCCCCCce-eeeeeEEe-e
Q 009277 161 SGDCKFIPQAPPDGPPVHTFEKACAAVYPSTVQHDIVWFWPNIAPRYKDIIKTKKPPHIPELDDPSFTK-LFGNRDIP-Y 238 (538)
Q Consensus 161 ~G~c~~iP~~~~~~~~~~~~~~~~l~~~pv~~~~G~IwV~~~~~~~~~d~~~~~~~p~~p~l~~~~~~~-~~~~~~~~-~ 238 (538)
+|+|+.+|+... .+++.++++|||++++|+||||+++++.+. .....+|.+++++.++|.. .....+++ +
T Consensus 96 ~G~~~~~P~~~~------~~~~~~l~~~~v~~~~G~v~v~~~~~~~~~--~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 167 (386)
T 2zyl_A 96 DGRCKLVPYARR------TPRMARTRSWTTDVRSGLLFVWHDHEGNPP--DPAVRIPEIPEAASDEWTDWRWNRILIEGS 167 (386)
T ss_dssp TSBEEECTTCSS------CCTTCBCCEECEEEETTEEEEEECTTCCCC--CGGGCCCCCGGGGCTTBCCCEEEEEEEESS
T ss_pred CCCccccCcccc------cCcccCcceEeEEEECCEEEEEECCccCCC--cccccCcccccccCCCceEEEEEEEEEcCc
Confidence 999999997542 235678999999999999999997653211 1123457777777777754 34567888 9
Q ss_pred chHHHHHhcCCCCCCccccccccccCCCceEEeccCCeEEEEEEe-ccC-C--CC-CCCCc-ccceeEEecceEEEEeec
Q 009277 239 GYEVLLENLMDPAHVPYAHYGLMRTRKPKVKLDREGGRPVEMSVN-KID-I--NG-FIGKQ-EWGSSKFLAPCIFFAYTD 312 (538)
Q Consensus 239 ~w~~l~EN~lD~~H~~~~H~~~~~~~~p~~~~~~~~~~~~~~~~~-~~~-~--~G-f~~~~-~~~~~~f~~P~~~~~~~~ 312 (538)
|||+++||++|+||++++|+++.... ....++.....+... ... . .+ ..+.. .+....|..|+++++...
T Consensus 168 nwk~~~EN~~D~~H~~~~H~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~~~~~~~~ 243 (386)
T 2zyl_A 168 NCRDIIDNVTDMAHFFYIHFGLPTYF----KNVFEGHIASQYLHNVGRPDVDDLGTSYGEAHLDSEASYFGPSFMINWLH 243 (386)
T ss_dssp CGGGGGGGGGCSTHHHHTTCEEEEEE----EEEEETTEEEEEEEEEECTTSSSCCSSSCCEEEEEEEEEESSSEEEEEEE
T ss_pred CHHhHhhhcccccchhhhCcCccccc----cccccCceeEEEecCCCCCchhhcccccCcceeeEEEEEECCeEEEEEee
Confidence 99999999999999999999875321 011111111111111 111 0 00 11111 223457788987765322
Q ss_pred cccccccCCCcccccccccccccEEEEEEEEECCCCeEEEEEEeecCcccccc----ccchhHHHHHhhhHHHhhhHHHH
Q 009277 313 LMKDQENGSASSAGAEKKLEQQRAALIFICVPVSPGHSRLIWAFPRNFQTWID----KVVPRWIFHIGQNLILDSDLYLL 388 (538)
Q Consensus 313 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~Pv~pg~tr~~~~~~r~~~~~~~----~~~prw~~h~~~~~Vl~eD~~il 388 (538)
... .+......+++.++|+++++|++++.+.+++..... ....+. ...+...+++||..|+
T Consensus 244 ~~~--------------~g~~~~~~~~~~~~Pv~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~vf~ED~~I~ 308 (386)
T 2zyl_A 244 NRY--------------GNYKSESILINCHYPVTQNSFVLQWGVIVEKPKGMSEEMTDKLSRV-FTEGVSKGFLQDVEIW 308 (386)
T ss_dssp EEE--------------TTEEEEEEEEEEEEEEETTEEEEEEEEEEBCCCCCC--CTHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred ecc--------------CCcceeEEEEEEEEEccCCEEEEEEEEEEecCCCCChhhHHHHHHH-HHHHHHHhhHHHHHHH
Confidence 100 001123456777899999999999876555422111 011111 2345678899999999
Q ss_pred HHHHhhhhccCCcccccccccCCccchHHHHHHHHHHHHHcC
Q 009277 389 HVEERKIMDVGPANWQKACFVPTKADALVVGFRRWLKKYAGG 430 (538)
Q Consensus 389 e~qq~~l~~~g~~~w~~~~~~p~~aD~~v~~fRrWl~~~~~g 430 (538)
+.|++.. . .+..+.|+++++||||+++++..
T Consensus 309 e~q~~~~--------~---p~~~~~D~~~~~fRrw~~~~~~~ 339 (386)
T 2zyl_A 309 KHKTRID--------N---PLLVEEDGAVYQLRRWYEQFYVD 339 (386)
T ss_dssp TTCCCCS--------S---CCCCGGGCSHHHHHHHHHGGGSC
T ss_pred Hhccccc--------C---CccCcccHHHHHHHHHHHHhCCc
Confidence 9875421 1 13456899999999999999863
No 3
>1z01_A 2-OXO-1,2-dihydroquinoline 8-monooxygenase, oxygenase component; rieske center, oxygen binding/activation, substrate bound complex; 1.80A {Pseudomonas putida} SCOP: b.33.1.2 d.129.3.3 PDB: 1z02_A 1z03_A*
Probab=100.00 E-value=3.7e-44 Score=385.51 Aligned_cols=336 Identities=16% Similarity=0.198 Sum_probs=226.1
Q ss_pred cccccc--ccccccccCCeEEeeecCCCCCCCcEEEEECCEEEEEEEeCCCCeEEEEecCCCCCCCCCCCCcc-cCCCeE
Q 009277 73 ELETNS--QEEKFDWFSQWYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRI-DQWGRL 149 (538)
Q Consensus 73 ~~~~~~--~e~~f~~~~~W~~v~~~~dL~~g~~~~~~l~g~~lvv~r~~~~G~~~a~~d~CpHRga~Ls~G~v-~~~~~l 149 (538)
.++..+ .|.+++|.+.||+||+++||++|+++.++++|++|||+| .+ |+++||+|+|||||++|+.|++ ..++.|
T Consensus 26 ~~~~~~~~~e~~~if~~~W~~v~~~~el~~g~~~~~~~~g~~vvl~r-~~-G~v~a~~n~CpHrga~L~~g~~~~~~~~i 103 (446)
T 1z01_A 26 TQSQYQPYKDAAWGFINHWYPALFTHELEEDQVQGIQICGVPIVLRR-VN-GKVFALKDQCLHRGVRLSEKPTCFTKSTI 103 (446)
T ss_dssp HHGGGHHHHHCTTCBCSEEEEEEEGGGSCBTCEEEEEETTEEEEEEE-ET-TEEEEEESSCTTTCCCGGGSCCCSSTTEE
T ss_pred CHHHhhhhhhhhhhhhhceEEEEEHHHCCCCCeEEEEECCEEEEEEE-eC-CEEEEEeCcCCCCcCCCCCCccCCCCCEE
Confidence 344556 788999999999999999999899999999999999999 45 8999999999999999999985 234799
Q ss_pred EeccCCcEEeC-CCCcccCCCCCCCCCCCCCccccccceeeEEEEcCeEEEccCCCC----CcccccccCCCCCCC----
Q 009277 150 QCVYHGWCFSG-SGDCKFIPQAPPDGPPVHTFEKACAAVYPSTVQHDIVWFWPNIAP----RYKDIIKTKKPPHIP---- 220 (538)
Q Consensus 150 ~CpYHGW~Fd~-~G~c~~iP~~~~~~~~~~~~~~~~l~~~pv~~~~G~IwV~~~~~~----~~~d~~~~~~~p~~p---- 220 (538)
+||||||+||. +|+|+.+|+.+.. ..+.+.+|++|||++++|+||||+++++ +..+ +.+..++.++
T Consensus 104 ~CpyHgw~fd~~~G~~~~~p~~p~~----~~~~~~~l~~~~v~~~~G~V~v~~~~~~~p~~~~~~-l~~~l~~~~~~~~~ 178 (446)
T 1z01_A 104 SCWYHGFTFDLETGKLVTIVANPED----KLIGTTGVTTYPVHEVNGMIFVFVREDDFPDEDVPP-LAHDLPFRFPERSE 178 (446)
T ss_dssp ECTTTCEEEETTTCBEEEETTCTTC----TTTTSCBCCEECEEEETTEEEEEECCTTCCGGGCCC-GGGGSCCCTTTTTT
T ss_pred EeCCCCeEEeCCCCCccccCCCccc----cCcccCCCcEEEEEEECCEEEEEeCCccccccCCCC-hhHhccchhhhhhh
Confidence 99999999996 9999999875432 2345788999999999999999998532 1111 1111211111
Q ss_pred -----------CCCCCCCceeeeeeEEeechHHHHHhcCCCCCCccccccccccCC---C-ce-----------EEecc-
Q 009277 221 -----------ELDDPSFTKLFGNRDIPYGYEVLLENLMDPAHVPYAHYGLMRTRK---P-KV-----------KLDRE- 273 (538)
Q Consensus 221 -----------~l~~~~~~~~~~~~~~~~~w~~l~EN~lD~~H~~~~H~~~~~~~~---p-~~-----------~~~~~- 273 (538)
.+.++++......+++++|||+++||++|+||+ ++|+++++... . .+ ....+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nwk~~~EN~~D~~H~-~vH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (446)
T 1z01_A 179 QFPHPLWPSSPSVLDDNAVVHGMHRTGFGNWRIACENGFDNAHI-LVHKDNTIVHAMDWVLPLGLLPTSDDCIAVVEDDD 257 (446)
T ss_dssp TSCCTTSCCCCCTTSTTEEEEEEEEEEESCHHHHHTTTTCTTGG-GGGTTCHHHHHTTCCCCSEEEECSTTSEEEECCSS
T ss_pred ccccccccccccccCCCeEEEeEEEEEcCCHHHHHHhccchhhh-hhhhhhhhcccccccccccccccCCCceeEEEecC
Confidence 223344443334568999999999999999999 99999875310 0 00 11111
Q ss_pred -CCeEEEEE-------EeccCCCCC---CCCcccceeEEecceEEEEeeccccccccCCCcccccccccccccEEEEEEE
Q 009277 274 -GGRPVEMS-------VNKIDINGF---IGKQEWGSSKFLAPCIFFAYTDLMKDQENGSASSAGAEKKLEQQRAALIFIC 342 (538)
Q Consensus 274 -~~~~~~~~-------~~~~~~~Gf---~~~~~~~~~~f~~P~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 342 (538)
..+..... .......+. .+...+....+.+|+++..... ......++..+
T Consensus 258 ~~~g~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~~~~~P~~~~~~~~-------------------p~~~~~~~~~~ 318 (446)
T 1z01_A 258 GPKGMMQWLFTDKWAPVLENQELGLKVEGLKGRHYRTSVVLPGVLMVENW-------------------PEEHVVQYEWY 318 (446)
T ss_dssp SCCEEEECTTSTTEEEECEETTTTEECCCCCCCCCEEEEETTTEEEEETC-------------------SSTTCEEEEEE
T ss_pred CCCEEEEEecCccccchhhhhhhccccccCCceEEEeeeecCceEEEecc-------------------CCCCeEEEEEE
Confidence 01111000 000000010 0111223456778988764210 01234567888
Q ss_pred EECCCCeEEEEEEeecCcccc--ccccc---hhHHHHHhhhHHHhhhHHHHHHHHhhhhccCCcccccccccCCccchHH
Q 009277 343 VPVSPGHSRLIWAFPRNFQTW--IDKVV---PRWIFHIGQNLILDSDLYLLHVEERKIMDVGPANWQKACFVPTKADALV 417 (538)
Q Consensus 343 ~Pv~pg~tr~~~~~~r~~~~~--~~~~~---prw~~h~~~~~Vl~eD~~ile~qq~~l~~~g~~~w~~~~~~p~~aD~~v 417 (538)
+|+++++|++++.+.+++... ..... ..++.......|+.||+.++|.||+++... ..|. ..++..+|+++
T Consensus 319 ~Pi~~~~t~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ED~~i~e~~q~~~~~~--~~~~--~~~l~~~D~~i 394 (446)
T 1z01_A 319 VPITDDTHEYWEILVRVCPTDEDRKKFQYRYDHMYKPLCLHGFNDSDLYAREAMQNFYYDG--TGWD--DEQLVATDISP 394 (446)
T ss_dssp EESSSSEEEEEEEEEEECCSHHHHHHHHHHHHTTHHHHTTTTHHHHHHHHHHHHHHHHHTS--HHHH--HCCCCGGGHHH
T ss_pred EECCCCcEEEEEEEecCCCCHHHHHHHHHHHHHHhhhhccCCCCcchHHHHHHHHHHhccc--cccc--cccCchhhHHH
Confidence 999999999988887776421 11111 111222223457899999999999987553 1232 24577789999
Q ss_pred HHHHHHHHHHHcCCCCCCCCCC
Q 009277 418 VGFRRWLKKYAGGQFNWGGKFN 439 (538)
Q Consensus 418 ~~fRrWl~~~~~g~~~w~~~~~ 439 (538)
++||||+++++.+.-.+.....
T Consensus 395 ~~~Rr~l~~~~~~~~~~~~~~~ 416 (446)
T 1z01_A 395 ITWRKLASRWNRGIAKPGRGVA 416 (446)
T ss_dssp HHHHHHHHHHCSCBCCCCCSST
T ss_pred HHHHHHHHHHHhhccCcccccC
Confidence 9999999999987654433333
No 4
>3n0q_A Putative aromatic-ring hydroxylating dioxygenase; rieske [2Fe-2S] domain, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.80A {Ruegeria SP}
Probab=100.00 E-value=1.1e-44 Score=384.51 Aligned_cols=323 Identities=16% Similarity=0.233 Sum_probs=229.7
Q ss_pred ccccccccccccccCCeEEeeecCCCC-CCCcEEEEECCEEEEEEEeCCCCeEEEEecCCCCCCCCCCC-CcccCCCeEE
Q 009277 73 ELETNSQEEKFDWFSQWYPLMPVCDLD-KRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSE-GRIDQWGRLQ 150 (538)
Q Consensus 73 ~~~~~~~e~~f~~~~~W~~v~~~~dL~-~g~~~~~~l~g~~lvv~r~~~~G~~~a~~d~CpHRga~Ls~-G~v~~~~~l~ 150 (538)
.++.++.|.+.+|.+.|++|++++||+ +|++++++++|++|+|+|+.+ |+++||.|+|||||++|+. |++.+ +.|+
T Consensus 26 d~~~~~~E~~~if~~~W~~v~~~~elp~~G~~~~~~i~g~~vvv~R~~d-G~v~A~~n~C~Hrga~L~~~g~~~~-~~i~ 103 (409)
T 3n0q_A 26 DAEVFQTDLQEIFYKEWLFAIPACELDKPGSYVTHQVGNYNVIIVRGAD-NVIRAFHNACRHRGSVICKAKKGNN-PKLV 103 (409)
T ss_dssp CHHHHHHHHHHTTTTSCEEEEEGGGSCSTTEEEEEEETTEEEEEEECTT-SCEEEEESCCTTTCCCSCCSSEEEC-SSEE
T ss_pred CHHHHHHHHHHHHhcCCEEEEEHHHCCCCCCeEEEEECCEEEEEEEcCC-CCEEeecCcCCcCcCCccCcCccCC-CEEE
Confidence 467788899999999999999999998 599999999999999999987 8999999999999999996 77764 6899
Q ss_pred eccCCcEEeCCCCcccCCCCCCCCCCCCCccccccceeeEEEEcCeEEEccCCCCCcc-cccccCCCCCCCCCCCCCCce
Q 009277 151 CVYHGWCFSGSGDCKFIPQAPPDGPPVHTFEKACAAVYPSTVQHDIVWFWPNIAPRYK-DIIKTKKPPHIPELDDPSFTK 229 (538)
Q Consensus 151 CpYHGW~Fd~~G~c~~iP~~~~~~~~~~~~~~~~l~~~pv~~~~G~IwV~~~~~~~~~-d~~~~~~~p~~p~l~~~~~~~ 229 (538)
||||||+||.+|+|+.+|+... .+++++.+|++|||++++|+||||++++++.. +.+. ...+.+..++.+++..
T Consensus 104 CpyHgw~fd~dG~~~~~P~~~~----~~~~~~~~L~~~~v~~~~G~Vfv~~~~~~~~l~~~l~-~~~~~l~~~~~~~~~~ 178 (409)
T 3n0q_A 104 CPYHQWTYELDGRLLWARDMGP----DFEPSRHGLKTVHCRELAGLIYICLADEAPDFERFAE-VARPYLEVHDLSNAKV 178 (409)
T ss_dssp CTTTCCEECTTSCEEECTTCCT----TCCGGGCSCCEEEEEEETTEEEEECSSSCCCCHHHHH-HHHHHHHTTCGGGEEE
T ss_pred ECCCCCEEeCCCCcccCCcCCc----ccCcccCCCceEEEEEECCEEEEEeCCCCCChHHhhh-hhhhhhccccCCCeEE
Confidence 9999999999999999997542 24567889999999999999999998764322 1111 0112233333333432
Q ss_pred -eeeeeEEeechHHHHHhcCCCCCCccccccccccCCC--c---eEE-----------ec--cCC----------eEEEE
Q 009277 230 -LFGNRDIPYGYEVLLENLMDPAHVPYAHYGLMRTRKP--K---VKL-----------DR--EGG----------RPVEM 280 (538)
Q Consensus 230 -~~~~~~~~~~w~~l~EN~lD~~H~~~~H~~~~~~~~p--~---~~~-----------~~--~~~----------~~~~~ 280 (538)
.....++++|||+++||++|+||++++|+++++.-.. . +.. .+ ..+ +....
T Consensus 179 ~~~~~~~~~~NWK~~~EN~~D~yH~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 258 (409)
T 3n0q_A 179 AHESSIVERGNWKLVWENNRECYHCGGNHPALCRTFPDDPSVTGIEGGETPSNLQAHFDRCEQAGMPSGFHLSGDGQFRV 258 (409)
T ss_dssp EEEEEEEESSCHHHHHHHHTCCTTHHHHCTTGGGTSCCCHHHHSCCCSCCCHHHHHHHHHHHHTTCCCCCEECTTSSEEE
T ss_pred eeEEEEEEecchHhhhhhccccccccccCcchhhccccccccccccccccccchhhhhhhhhccCCcceeecccccceee
Confidence 2345788999999999999999999999998764210 0 000 00 000 01111
Q ss_pred E---Eecc----CCCCCC------C----CcccceeEEecceEEEEeeccccccccCCCcccccccccccccEEEEEEEE
Q 009277 281 S---VNKI----DINGFI------G----KQEWGSSKFLAPCIFFAYTDLMKDQENGSASSAGAEKKLEQQRAALIFICV 343 (538)
Q Consensus 281 ~---~~~~----~~~Gf~------~----~~~~~~~~f~~P~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 343 (538)
. +... ..+|-. + ........++.||++++. .++.+.++.++
T Consensus 259 ~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~Pn~~~~~----------------------~pd~~~~~~~~ 316 (409)
T 3n0q_A 259 ARMPLKEGAESYTMDGKTAVRRWLGRAAFADAGSLLKFHYPTTWNHF----------------------LSDHSIVFRVT 316 (409)
T ss_dssp EEECCSTTCCSSSTTSSCSCSSCSSCCSSSCCCEEEEEETTTEEEEE----------------------CSSCEEEEEEE
T ss_pred eeecccccccccccCCccccccccCCCcccCCceEEEEECCeEEEEE----------------------CCCEEEEEEEE
Confidence 1 1110 111100 0 111234567889988742 24567889999
Q ss_pred ECCCCeEEEEEEe--ecCccccccccchhHHHHHhhhHHHhhhHHHHHHHHhhhhccCCcccccccccCCccchHHHHHH
Q 009277 344 PVSPGHSRLIWAF--PRNFQTWIDKVVPRWIFHIGQNLILDSDLYLLHVEERKIMDVGPANWQKACFVPTKADALVVGFR 421 (538)
Q Consensus 344 Pv~pg~tr~~~~~--~r~~~~~~~~~~prw~~h~~~~~Vl~eD~~ile~qq~~l~~~g~~~w~~~~~~p~~aD~~v~~fR 421 (538)
|++|++|++.+.+ +.+.....+..... ...+++.|++||..++|..|+++.+..+ ..+.|.|. .|.++..|+
T Consensus 317 P~~p~~t~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~~ED~~l~e~~Q~G~~s~~y---~~G~~s~~-~E~~v~~F~ 390 (409)
T 3n0q_A 317 PISPTETEVTTKWLVHKDAVEGVDYDLQR--LTEVWIATNDEDREVVEFNQMGINSPAY---EPGPYSPT-QESGVLQFV 390 (409)
T ss_dssp EEETTEEEEEEEEEEETTCCBTTTBCHHH--HHHHHHHHHHHHHHHHHHHHHHHTSTTC---CCCBCCTT-TSHHHHHHH
T ss_pred ECCCCeEEEEEEEEEcCcccccchhhHHH--HHHHHHHHHHHHHHHHHHHhhhhcCCCC---CCCCCCCC-ccHhHHHHH
Confidence 9999999996544 33332111111121 1234677999999999999999998764 56777663 599999999
Q ss_pred HHHHHHHcC
Q 009277 422 RWLKKYAGG 430 (538)
Q Consensus 422 rWl~~~~~g 430 (538)
+|+.+.+..
T Consensus 391 ~w~~~~l~~ 399 (409)
T 3n0q_A 391 EWYLSTLKR 399 (409)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999998865
No 5
>3vca_A Ring-hydroxylating dioxygenase; rieske-type, mononuclear non-heme iron, N-demethylase, oxido; 1.59A {Sinorhizobium meliloti} PDB: 3vcp_A
Probab=100.00 E-value=4.9e-44 Score=379.81 Aligned_cols=322 Identities=17% Similarity=0.258 Sum_probs=229.5
Q ss_pred ccccccccccccccCCeEEeeecCCCC-CCCcEEEEECCEEEEEEEeCCCCeEEEEecCCCCCCCCCC-CCcccCCCeEE
Q 009277 73 ELETNSQEEKFDWFSQWYPLMPVCDLD-KRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLS-EGRIDQWGRLQ 150 (538)
Q Consensus 73 ~~~~~~~e~~f~~~~~W~~v~~~~dL~-~g~~~~~~l~g~~lvv~r~~~~G~~~a~~d~CpHRga~Ls-~G~v~~~~~l~ 150 (538)
.++-++.|.+.+|.+.|++||+++||+ +|+++.++++|++|+|+|+++ |+++||.|+|||||++|+ +|++++ +.|+
T Consensus 28 d~~~~~~E~~~if~~~W~~v~~~~elp~~G~~~~~~i~g~~vvv~R~~d-G~v~A~~n~CpHrga~L~~~g~~~~-~~i~ 105 (412)
T 3vca_A 28 SPEVYALDLQHIFYKQWLYAVPVCQLAKAGSYTTLRVGAYEVVIVRSRD-GEVRAFHNSCRHRGSLICKARQGQV-AKLV 105 (412)
T ss_dssp CHHHHHHHHHHTTTTSCEEEEEGGGGCSTTEEEEEEETTEEEEEEECTT-SCEEEEESSCTTTCCCSCCSSEEEC-SSEE
T ss_pred CHHHHHHHHHHHHhccCEEEEEHHHCCCCCCeEEEEECCEEEEEEEcCC-CCEEEecccCCCCCCEeecccccCC-CEEE
Confidence 467778899999999999999999998 699999999999999999877 899999999999999998 787764 6899
Q ss_pred eccCCcEEeCCCCcccCCCCCCCCCCCCCccccccceeeEEEEcCeEEEccCCCCCcc-cccccCCCCCCCCCCCCCCce
Q 009277 151 CVYHGWCFSGSGDCKFIPQAPPDGPPVHTFEKACAAVYPSTVQHDIVWFWPNIAPRYK-DIIKTKKPPHIPELDDPSFTK 229 (538)
Q Consensus 151 CpYHGW~Fd~~G~c~~iP~~~~~~~~~~~~~~~~l~~~pv~~~~G~IwV~~~~~~~~~-d~~~~~~~p~~p~l~~~~~~~ 229 (538)
||||||+||.+|+|+.+|+... .+++++.+|++|||++++|+||||++++++.. +.+.. ..+.++.++.+++..
T Consensus 106 CPyHgw~fdldG~~~~~P~~~~----~~~~~~~~L~~~~v~~~~G~V~v~~~~~~p~l~~~l~~-~~~~l~~~~~~~~~~ 180 (412)
T 3vca_A 106 CPYHQWTYELDGKLIWANDMGP----DFDASKYGLKPVNLRNLDGLIYICLSDTPPDFQTFAQL-ARPYLEVHDLKDAKV 180 (412)
T ss_dssp CTTTCCEECTTSCEEECTTCCT----TCCGGGCSCCEEEEEEETTEEEEECSSSCCCCHHHHHH-HHHHHHTTCGGGEEE
T ss_pred cCCCCCEEcCCCccccCCcccc----ccCcccCCCcEEEEEEECCEEEEEecCCCCCHHHHhhh-hHHhhccccCCCeEE
Confidence 9999999999999999997542 24567789999999999999999998764322 11110 112222333233332
Q ss_pred -eeeeeEEeechHHHHHhcCCCCCCccccccccccCC--Cc---eEE---------------ec---------c-CCeEE
Q 009277 230 -LFGNRDIPYGYEVLLENLMDPAHVPYAHYGLMRTRK--PK---VKL---------------DR---------E-GGRPV 278 (538)
Q Consensus 230 -~~~~~~~~~~w~~l~EN~lD~~H~~~~H~~~~~~~~--p~---~~~---------------~~---------~-~~~~~ 278 (538)
.....++++|||+++||++|+||++++|+++++... +. +.. +. . .+ ..
T Consensus 181 ~~~~~~~~~~NWK~~~EN~~D~yH~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g-~~ 259 (412)
T 3vca_A 181 AFTSTIIEKGNWKLVWENNRECYHCSSNHPALCRSFPLDPEVAGVQADGGVSKKLQAHFDRCEAAGTPAQFVLAGDG-QY 259 (412)
T ss_dssp EEEEEEEESSCHHHHHHHHTCCTTHHHHCHHHHTTSCCCHHHHCC----CCCHHHHHHHHHHHHTTCCCSCEECTTS-SE
T ss_pred eEEEEEEEccCchhhHhhccccccCcccCcchhhcccccccccccccccccccchhhhhhhhhccCCcccccccccC-ce
Confidence 234578899999999999999999999999876321 00 000 00 0 01 11
Q ss_pred EEE---Eecc----CCCC---C---CCC----cccceeEEecceEEEEeeccccccccCCCcccccccccccccEEEEEE
Q 009277 279 EMS---VNKI----DING---F---IGK----QEWGSSKFLAPCIFFAYTDLMKDQENGSASSAGAEKKLEQQRAALIFI 341 (538)
Q Consensus 279 ~~~---~~~~----~~~G---f---~~~----~~~~~~~f~~P~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 341 (538)
... +... ..+| . .+. .......++.||+++.. .++.+.++.
T Consensus 260 ~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~Pn~~~~~----------------------~pd~~~~~~ 317 (412)
T 3vca_A 260 RLARMPLQEKALSYTMDGKAAVSRHLGRVAPPDAGTLLMFHYPSTWNHF----------------------LPDHSLTFR 317 (412)
T ss_dssp EEEEECCSTTCCSSSSSSSCSCSSCSSCCCSTTCCEEEEEETTTEEEEE----------------------CSSCEEEEE
T ss_pred eeeeecccccccccccCccccccccccCCcccCCceEEEEECCeEEEEE----------------------CCCEEEEEE
Confidence 111 1110 0111 1 011 11234567899988742 245678889
Q ss_pred EEECCCCeEEEEEE--eecCccccccccchhHHHHHhhhHHHhhhHHHHHHHHhhhhccCCcccccccccCCccchHHHH
Q 009277 342 CVPVSPGHSRLIWA--FPRNFQTWIDKVVPRWIFHIGQNLILDSDLYLLHVEERKIMDVGPANWQKACFVPTKADALVVG 419 (538)
Q Consensus 342 ~~Pv~pg~tr~~~~--~~r~~~~~~~~~~prw~~h~~~~~Vl~eD~~ile~qq~~l~~~g~~~w~~~~~~p~~aD~~v~~ 419 (538)
++|+++++|++.+. ++.+.....+....++ ..+++.|++||..++|..|+++.+..+ ..+.|.|. .|.++..
T Consensus 318 ~~P~~~~~t~v~~~~~~~~d~~~~~d~~~~~~--~~~~~~~~~ED~~l~e~~Q~G~~S~~y---~~G~~sp~-~E~~v~~ 391 (412)
T 3vca_A 318 VMPISPTETEVTTTWLVHKDAVEGVDYDLKRL--TEVWIATNDEDREIVETNQQGILSPAY---VPGPYSPG-QESGVMQ 391 (412)
T ss_dssp EEEEETTEEEEEEEEEEETTCCBTTTBCHHHH--HHHHHHHHHHHHHHHHHHHHHHTSTTC---CCCBCCTT-TCHHHHH
T ss_pred EEECCCCeEEEEEEEEEccccccCccHHHHHH--HHHHHHHHHHHHHHHHHhhhhhcCCCC---CCCCCCCC-cchhHHH
Confidence 99999999999654 4443322111111221 244678999999999999999998764 57777653 5999999
Q ss_pred HHHHHHHHHcC
Q 009277 420 FRRWLKKYAGG 430 (538)
Q Consensus 420 fRrWl~~~~~g 430 (538)
|++|+.+.+..
T Consensus 392 F~~w~~~~l~~ 402 (412)
T 3vca_A 392 FVDWYAASLER 402 (412)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999998864
No 6
>2de6_A Terminal oxygenase component of carbazole; electron transfer complex, rieske non-heme iron oxygenase system, terminal oxygenase; 1.80A {Janthinobacterium} SCOP: b.33.1.2 d.129.3.3 PDB: 1ww9_A 2de5_A 2de7_A*
Probab=100.00 E-value=9.1e-44 Score=376.61 Aligned_cols=316 Identities=17% Similarity=0.284 Sum_probs=216.1
Q ss_pred cccccccccCCeEEeeecCCCCCCCcEEEEECCEEEEEEEeCCCCeEEEEecCCCCCCCCCCCCccc-CCCeEEeccCCc
Q 009277 78 SQEEKFDWFSQWYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRID-QWGRLQCVYHGW 156 (538)
Q Consensus 78 ~~e~~f~~~~~W~~v~~~~dL~~g~~~~~~l~g~~lvv~r~~~~G~~~a~~d~CpHRga~Ls~G~v~-~~~~l~CpYHGW 156 (538)
-.|.+.+|++.||+|++++||++|+++.++++|++|||||+ + |+++||+|+|||||++|+.|++. .++.|+||||||
T Consensus 18 ~~e~~~~~~~~W~~v~~~~el~~g~~~~~~~~g~~vvl~R~-~-G~v~a~~n~CpHrga~L~~g~~~~~~~~i~CpyHgw 95 (392)
T 2de6_A 18 YVDAKLGFRNHWYPVMFSKEINEGEPKTLKLLGENLLVNRI-D-GKLYCLKDRCLHRGVQLSVKVECKTKSTITCWYHAW 95 (392)
T ss_dssp HHHCTTCBSSEEEEEEEGGGSCBTCCEEEEETTEEEEEEEE-T-TEEEEEESSCTTTCCCGGGGCCCCSTTEEECTTTCE
T ss_pred cchhhhhhccccEEEEEHHHCCCCCeEEEEECCEEEEEEEe-C-CEEEEEeCcCCCCCCCCcCCcccCCCCEEEeCCCCC
Confidence 45778999999999999999998999999999999999995 5 89999999999999999999864 347899999999
Q ss_pred EEeC-CCCcccCCCCCCCCCCCCCccccccceeeEEEEcCeEEEccCCCCCcccccccCCCCCC-CCCCCCCCceeeeee
Q 009277 157 CFSG-SGDCKFIPQAPPDGPPVHTFEKACAAVYPSTVQHDIVWFWPNIAPRYKDIIKTKKPPHI-PELDDPSFTKLFGNR 234 (538)
Q Consensus 157 ~Fd~-~G~c~~iP~~~~~~~~~~~~~~~~l~~~pv~~~~G~IwV~~~~~~~~~d~~~~~~~p~~-p~l~~~~~~~~~~~~ 234 (538)
+||. +|+|+.+|+.+.. ..+++.+|++|||++++|+||||++++..+ + +. +.+ +++.++++.......
T Consensus 96 ~f~~~~G~~~~~p~~p~~----~~~~~~~l~~~~v~~~~G~v~v~~~~~~~~-~-l~----~~l~~~~~~~~~~~~~~~~ 165 (392)
T 2de6_A 96 TYRWEDGVLCDILTNPTS----AQIGRQKLKTYPVQEAKGCVFIYLGDGDPP-P-LA----RDTPPNFLDDDMEILGKNQ 165 (392)
T ss_dssp EEETTTCBEEEETTCTTC----TTTTSCBCCBCCEEEETTEEEEEESSSSCC-C-GG----GGSCTTTTCTTEEEEEEEE
T ss_pred EEcCCCCccccccCCccc----cccccCCCceEeEEEECCEEEEEeCCCCCC-C-hh----HhccccccCCCeEEEEEEE
Confidence 9996 9999999975432 234678899999999999999999742211 1 11 112 345555665444557
Q ss_pred EEeechHHHHHhcCCCCCCccccccccccCC-----C------------ceEEecc---CCeEEEEEEeccC-------C
Q 009277 235 DIPYGYEVLLENLMDPAHVPYAHYGLMRTRK-----P------------KVKLDRE---GGRPVEMSVNKID-------I 287 (538)
Q Consensus 235 ~~~~~w~~l~EN~lD~~H~~~~H~~~~~~~~-----p------------~~~~~~~---~~~~~~~~~~~~~-------~ 287 (538)
++++|||+++||++|+||+ |+|+++++... + .+..+.. ..+.... ..... .
T Consensus 166 ~~~~nwk~~~EN~~D~~H~-~~H~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~g~~~~-~~~~~~p~~~~~~ 243 (392)
T 2de6_A 166 IIKSNWRLAVENGFDPSHI-YIHKDSILVKDNDLALPLGFAPGGDRKQQTRVVDDDVVGRKGVYDL-IGEHGVPVFEGTI 243 (392)
T ss_dssp EESSCHHHHHHHHHCGGGG-GGGTTCHHHHHTTBEECSEEECCSCGGGGEEEECCCTTCCCEEEEC-GGGTCEEECEEEE
T ss_pred EEecChHhhhHhcchhhhh-hhhcchhccccccccccccccccccccceEEeccCCccCCcceeee-cCCcccccccccc
Confidence 8999999999999999999 99999875311 0 0001110 0000000 00000 0
Q ss_pred CCC------CCCc-ccceeEEecceEEEEeeccccccccCCCcccccccccccccEEEEEEEEECCCCeEEEEEEeecCc
Q 009277 288 NGF------IGKQ-EWGSSKFLAPCIFFAYTDLMKDQENGSASSAGAEKKLEQQRAALIFICVPVSPGHSRLIWAFPRNF 360 (538)
Q Consensus 288 ~Gf------~~~~-~~~~~~f~~P~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~Pv~pg~tr~~~~~~r~~ 360 (538)
.+. .+.. ......+..|+++.... .+ ...+.++..++|+++++|++++.+.+++
T Consensus 244 ~~~~~~~~~~g~~~~~~~~~~~~P~~~~~~~--~p-----------------~~~~~~~~~~~Pi~~~~t~~~~~~~~~~ 304 (392)
T 2de6_A 244 GGEVVREGAYGEKIVANDISIWLPGVLKVNP--FP-----------------NPDMMQFEWYVPIDENTHYYFQTLGKPC 304 (392)
T ss_dssp TTEEEEECEECSBCCCCEEEEETTTEEEEES--CS-----------------STTCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred ccceeeccccCCcccceeEEEecccceeccc--cC-----------------CCCEEEEEEEeecCCCcEEEEEEEecCC
Confidence 000 0000 01233455777654311 00 1134456778999999999998888776
Q ss_pred ccccc------ccchhHHHHHhhhHHHhhhHHHHHHHHhhhhccCCcccccccccCCccchHHHHHHHHHHHHHcCC
Q 009277 361 QTWID------KVVPRWIFHIGQNLILDSDLYLLHVEERKIMDVGPANWQKACFVPTKADALVVGFRRWLKKYAGGQ 431 (538)
Q Consensus 361 ~~~~~------~~~prw~~h~~~~~Vl~eD~~ile~qq~~l~~~g~~~w~~~~~~p~~aD~~v~~fRrWl~~~~~g~ 431 (538)
..... .+...|. ......|++||+.++|+||+.+... ..|.+ ..+.++|+++++||||+++++.+.
T Consensus 305 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~qD~~i~e~qq~~~~~~--~~~~~--e~~~~~D~~~~~~Rr~l~~~~~~~ 376 (392)
T 2de6_A 305 ANDEERKKYEQEFESKWK-PMALEGFNNDDIWAREAMVDFYADD--KGWVN--EILFESDEAIVAWRKLASEHNQGI 376 (392)
T ss_dssp SSHHHHHHHHHHHHHTHH-HHTTTTTTHHHHHHHHHTHHHHHTS--THHHH--CCCCGGGHHHHHHHHHHHHHCSCB
T ss_pred CCHHHHHHHHHHHHHHHH-HhhccCCChhhHHHHHhhhhhhhcc--ccCcc--ceecchhHHHHHHHHHHHHHhhhh
Confidence 43111 0111111 1123457899999999999977543 22422 346678999999999999998764
No 7
>3gkq_A Terminal oxygenase component of carbazole 1,9A- dioxygenase; rieske nonheme iron oxygenase, electron transfer, putidaredoxin-type ferredoxin; 2.10A {Sphingomonas}
Probab=100.00 E-value=2e-40 Score=345.63 Aligned_cols=317 Identities=19% Similarity=0.301 Sum_probs=223.9
Q ss_pred cccccccccCCeEEeeecCCCCCCCcEEEEECCEEEEEEEeCCCCeEEEEecCCCCCCCCCCCCccc-CCCeEEeccCCc
Q 009277 78 SQEEKFDWFSQWYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRID-QWGRLQCVYHGW 156 (538)
Q Consensus 78 ~~e~~f~~~~~W~~v~~~~dL~~g~~~~~~l~g~~lvv~r~~~~G~~~a~~d~CpHRga~Ls~G~v~-~~~~l~CpYHGW 156 (538)
-.|.+++|++.||+||+++||++|+++.++++|++|+|+| .+ |+++||.|+|||||++|+.|.+. .++.|+||||||
T Consensus 21 ylE~e~if~~~W~~V~~~~ELp~G~~~~v~i~G~~VvV~R-~d-G~v~A~~N~CpHRGa~Ls~G~~~~~~~~I~CPyHGW 98 (389)
T 3gkq_A 21 YIDAKLGFRNHWYPVRLSAEVAEASPVPVQLLGEKVLLNR-VD-GVVHAIADRCLHRGVTLSDKVECYSKATISCWYHGW 98 (389)
T ss_dssp HHHCTTCBSSEEEEEEEGGGSCBTCCEEEEETTEEEEEEE-ET-TEEEEEESSCTTTCCCGGGGCCCSBTTEEECTTTCE
T ss_pred hhhhhhhhcCccEEEEEHHHCCCCCeEEEEECCEEEEEEE-eC-CeEEEeCCcCCCCCCCccCCcccCcCCEEECCCCCC
Confidence 4588999999999999999999999999999999999999 45 89999999999999999999742 247899999999
Q ss_pred EEeC-CCCcccCCCCCCCCCCCCCccccccceeeEEEEcCeEEEccCCCCCcccccccCCCCCCCCCCCCCCceeeeeeE
Q 009277 157 CFSG-SGDCKFIPQAPPDGPPVHTFEKACAAVYPSTVQHDIVWFWPNIAPRYKDIIKTKKPPHIPELDDPSFTKLFGNRD 235 (538)
Q Consensus 157 ~Fd~-~G~c~~iP~~~~~~~~~~~~~~~~l~~~pv~~~~G~IwV~~~~~~~~~d~~~~~~~p~~p~l~~~~~~~~~~~~~ 235 (538)
+||. +|+|+.+|+.++. ..+.+.+|++|||++++|+||||+++.+. .+ +.+..+ +.+.+.++.......+
T Consensus 99 ~Fdl~dG~cv~iP~~P~~----~~~~~~~L~~ypV~e~~G~VfV~lgd~~~-pp-L~e~l~---~~~~~~~~~~~~~~~~ 169 (389)
T 3gkq_A 99 TYRWDNGKLVDILTNPTS----VQIGRHALKTYPVREEKGLVFLFVGDQEP-HD-LAEDVP---PGFLDADLAVHGQHRV 169 (389)
T ss_dssp EEETTTCBEEEETTCTTC----TTTTSCBCCBCCEEEETTEEEEEESSSCC-CC-GGGGSC---TTTTCTTEEEEEEEEE
T ss_pred EEECCCCCeecccCCccc----ccccccCCcEEEEEEECCeEEEecCCCCC-CC-chhhcc---hhccCCceEEEeEEEE
Confidence 9997 8999999976532 23456789999999999999999964211 11 111111 2344555654445678
Q ss_pred EeechHHHHHhcCCCCCCccccccccccCC---C-ceEEecc-CCeEEEEEEeccCCCCC--------------------
Q 009277 236 IPYGYEVLLENLMDPAHVPYAHYGLMRTRK---P-KVKLDRE-GGRPVEMSVNKIDINGF-------------------- 290 (538)
Q Consensus 236 ~~~~w~~l~EN~lD~~H~~~~H~~~~~~~~---p-~~~~~~~-~~~~~~~~~~~~~~~Gf-------------------- 290 (538)
+++|||+++||++|+||+ ++|+++++... . ....... .+....+..++..+.|+
T Consensus 170 i~~NWK~~~EN~lD~yH~-~vH~~si~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~kg~~~~~~~~~~~~~~~~~~~~~ 248 (389)
T 3gkq_A 170 VDANWRMGVENGFDAGHV-FIHKSSILLDGNDIALPLGFAPGDPEQLTRSVTGEGAPKGVFDLLGEHSVPIFEATIEGQP 248 (389)
T ss_dssp ESSCHHHHHHHHTCSGGG-GGGTTCHHHHHTTBCBCSEEEECCGGGSEEEECCTTSCCEEEECSGGGEEEESEEEETTEE
T ss_pred EecCchhhHHhcchhchh-hCccccccccccccccccccccCCCcceEEEEcCCCCCccHHhhhhccccccccccccCcc
Confidence 999999999999999999 99999886321 0 1111110 11111112222112221
Q ss_pred -----CCCc-ccceeEEecceEEEEeeccccccccCCCcccccccccccccEEEEEEEEECCCCeEEEEEEeecCccccc
Q 009277 291 -----IGKQ-EWGSSKFLAPCIFFAYTDLMKDQENGSASSAGAEKKLEQQRAALIFICVPVSPGHSRLIWAFPRNFQTWI 364 (538)
Q Consensus 291 -----~~~~-~~~~~~f~~P~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~Pv~pg~tr~~~~~~r~~~~~~ 364 (538)
.+.. ......+..|++++... + ..++++.+-..+|+++++++++-.+.+.+...-
T Consensus 249 ~~~~~~~~~~~~~~~s~~lP~v~~v~~-~------------------~~~~~~~~~~~vpi~~~~~~y~~~~~~~~~~~~ 309 (389)
T 3gkq_A 249 AIQGHMGSKMVAISISVWLPGVLKVDP-F------------------PDPTLTQFEWYVPIDEGHHLYLQMLGRRVGSEE 309 (389)
T ss_dssp EEECBCCSBCCCCEEEEETTTEEEEES-C------------------SSTTCEEEEEEEEEETTEEEEEEEEEEECSSHH
T ss_pred cccCCCCCcccceeEEEEecCeeEecc-C------------------CCCCeEEEEEEeeccCCeEEEEEEEEEEcCCHH
Confidence 1110 12345677888877541 1 123667777889999999999876665443211
Q ss_pred ------cccchhHHHHHhhhHHHhhhHHHHHHHHhhhhccCCcccccccccCCccchHHHHHHHHHHHHHcC
Q 009277 365 ------DKVVPRWIFHIGQNLILDSDLYLLHVEERKIMDVGPANWQKACFVPTKADALVVGFRRWLKKYAGG 430 (538)
Q Consensus 365 ------~~~~prw~~h~~~~~Vl~eD~~ile~qq~~l~~~g~~~w~~~~~~p~~aD~~v~~fRrWl~~~~~g 430 (538)
.++..+|..+ ..+.++++|...-|++|...... ..|.+. .....|..++++||...++..|
T Consensus 310 ~~~~~~~~~~~~~~~~-~~~~f~~~d~~ar~~~~~~y~~~--~g~~~e--~l~~~d~~~~~wr~~~~~~~~~ 376 (389)
T 3gkq_A 310 EARSFEAEFREKWVEL-ALNGFNDDDILARRSMEPFYADD--RGWREE--VLFESDRAIIEWRRLASQYNRG 376 (389)
T ss_dssp HHHHHHHHHHHTHHHH-TTTTTTHHHHHHHHHHHHHHHTS--HHHHHC--CCCGGGHHHHHHHHHHHHHCSC
T ss_pred HHHHHHHHHHHHHHHH-hhccccchhHHHHHHHHHhhccC--CCCChh--hccCcchhHHHHHHHHHHhccc
Confidence 1222345433 24678999999999999887654 347654 4456799999999999999765
No 8
>3gcf_A Terminal oxygenase component of carbazole 1,9A- dioxygenase; rieske oxygenase, 2Fe-2S, electron transfer, oxidoreductase; 2.30A {Nocardioides aromaticivorans}
Probab=100.00 E-value=2e-40 Score=346.51 Aligned_cols=316 Identities=18% Similarity=0.247 Sum_probs=223.7
Q ss_pred ccccccccccCCeEEeeecCCCCCCCcEEEEECCEEEEEEEeCCCCeEEEEecCCCCCCCCCCCCccc-CCCeEEeccCC
Q 009277 77 NSQEEKFDWFSQWYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRID-QWGRLQCVYHG 155 (538)
Q Consensus 77 ~~~e~~f~~~~~W~~v~~~~dL~~g~~~~~~l~g~~lvv~r~~~~G~~~a~~d~CpHRga~Ls~G~v~-~~~~l~CpYHG 155 (538)
.-.|.+++|++.||+||+++||++|+++.++++|++|+|+| .+ |+++||+|+|||||++|+.|.+. .++.|+|||||
T Consensus 23 ~yLE~~~if~~~W~~V~~~~ELp~G~~~~v~i~G~~VvV~R-~d-G~v~A~~N~CpHRGa~Ls~G~~~~~~~~I~CPyHG 100 (394)
T 3gcf_A 23 RYLEATLGFDNHWHPAAFDHELAEGEFVAVTMLGEKVLLTR-AK-GEVKAIADGCAHRGVPFSKEPLCFKAGTVSCWYHG 100 (394)
T ss_dssp HHHHCTTCEESEEEEEEEGGGCCBTCEEEEEETTEEEEEEE-ET-TEEEEEESSCTTTCCCGGGSCBCSSTTEEECTTTC
T ss_pred hhhhhhhhhcccCEEEEEHHHCCCCCeEEEEECCEEEEEEE-eC-CeEEEeeCcCCCCCCCCcCCcccCcCCEEECCCCC
Confidence 45588999999999999999999999999999999999999 45 89999999999999999999742 34689999999
Q ss_pred cEEeC-CCCcccCCCCCCCCCCCCCccccccceeeEEEEcCeEEEccCCCCCcccccccCCCCCCCCCCCCCCceeeeee
Q 009277 156 WCFSG-SGDCKFIPQAPPDGPPVHTFEKACAAVYPSTVQHDIVWFWPNIAPRYKDIIKTKKPPHIPELDDPSFTKLFGNR 234 (538)
Q Consensus 156 W~Fd~-~G~c~~iP~~~~~~~~~~~~~~~~l~~~pv~~~~G~IwV~~~~~~~~~d~~~~~~~p~~p~l~~~~~~~~~~~~ 234 (538)
|+||. +|+|+.+|+.+.. ..+.+.+|++|||++++|+||||+++.+. .+ +.... .+.+.+.++.......
T Consensus 101 W~Fdl~dG~cv~iP~~p~~----~~~~~~~L~~ypV~e~~G~VfV~lgd~~~-pp-L~e~L---~~~~~d~~~~~~~~~~ 171 (394)
T 3gcf_A 101 WTYDLDDGRLVDVLTSPGS----PVIGKIGIKVYPVQVAQGVVFVFIGDEEP-HA-LSEDL---PPGFLDEDTHLLGIRR 171 (394)
T ss_dssp EEEETTTCBEEEETTSTTC----TTTTSCBCCEECEEEETTEEEEEESSSCC-CC-GGGGS---CTTTTCTTEEEEEEEE
T ss_pred cEEECCCCceeccCCCccc----ccccccCceEEEEEEECCcEEEecCCCCC-CC-chhhc---chhhcCCceEEEeEEE
Confidence 99997 8999999976532 23456789999999999999999964221 11 11111 1234455665444567
Q ss_pred EEeechHHHHHhcCCCCCCccccccccccCC---C-ceEEecc-CCeEEEEEEeccCCCCCC------------------
Q 009277 235 DIPYGYEVLLENLMDPAHVPYAHYGLMRTRK---P-KVKLDRE-GGRPVEMSVNKIDINGFI------------------ 291 (538)
Q Consensus 235 ~~~~~w~~l~EN~lD~~H~~~~H~~~~~~~~---p-~~~~~~~-~~~~~~~~~~~~~~~Gf~------------------ 291 (538)
++++|||+++||++|+||+ |+|+++++... + .+.+... .+... . ..+..+.|..
T Consensus 172 ~i~~NWK~~~EN~lD~yH~-~vH~~ti~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~kg~~~~~~~~~~pv~~~~~~~~ 248 (394)
T 3gcf_A 172 TVQSNWRLGVENGFDTTHI-FMHRNSPWVSGNRLAFPYGFVPADRDAMQ-V-YDENWPKGVLDRLSENYMPVFEATLDGE 248 (394)
T ss_dssp EESSCHHHHHHHHSCSSGG-GGGTTCHHHHHTTBCCCSEEEECSTTSEE-E-ECSSSSCEEEECHHHHEEEECEEEETTE
T ss_pred EEecCchhhHhhccccchh-hCchhhhcccccccccCcceeEcCCceEE-e-ccCCCCcchhhhhhcccccccccccccc
Confidence 8999999999999999999 99999986421 1 1111111 11101 0 0111111100
Q ss_pred --------CC--cccceeEEecceEEEEeeccccccccCCCcccccccccccccEEEEEEEEECCCCeEEEEEEeecCcc
Q 009277 292 --------GK--QEWGSSKFLAPCIFFAYTDLMKDQENGSASSAGAEKKLEQQRAALIFICVPVSPGHSRLIWAFPRNFQ 361 (538)
Q Consensus 292 --------~~--~~~~~~~f~~P~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~Pv~pg~tr~~~~~~r~~~ 361 (538)
+. .......+..|++.+.. .+ ..++++++-..+|+++++++++-.+.+.+.
T Consensus 249 ~~~~~~~~~~~~~~~~~~s~~lP~v~~v~-~~------------------p~~~~~~~~~~vPid~~~~~~~~~~~~~~~ 309 (394)
T 3gcf_A 249 TVLSAELTGEEKKVAAQVSVWLPGVLKVD-PF------------------PDPTLIQYEFYVPISETQHEYFQVLQRKVE 309 (394)
T ss_dssp EEEECCCCSSCBCCCSEEEEETTTEEEEE-SC------------------SSTTCEEEEEEEESSSSCEEEEEEEEEECS
T ss_pred ccccccccCcccccceeEEEEecCeeEec-cC------------------CCCCeEEEEEEeeccCCeEEEEEEEEEECC
Confidence 11 01234567778877754 11 123667777889999999999866655443
Q ss_pred cc------ccccchhHHHHHhhhHHHhhhHHHHHHHHhhhhccCCcccccccccCCccchHHHHHHHHHHHHHcC
Q 009277 362 TW------IDKVVPRWIFHIGQNLILDSDLYLLHVEERKIMDVGPANWQKACFVPTKADALVVGFRRWLKKYAGG 430 (538)
Q Consensus 362 ~~------~~~~~prw~~h~~~~~Vl~eD~~ile~qq~~l~~~g~~~w~~~~~~p~~aD~~v~~fRrWl~~~~~g 430 (538)
.. ..+...+|..+ ..+.++++|...-+++|...... ..|.+. .....|..++++||...++..|
T Consensus 310 ~~~~~~~~~~~~~~~~~~~-~~~~f~~~d~~ar~~~~~~y~~~--~g~~~e--~l~~~d~~~~~~r~~~~~~~~~ 379 (394)
T 3gcf_A 310 GPEDVKTFEVEFEERWRDD-ALHGFNDDDVWAREAQQEFYGER--DGWSKE--QLFPPDMCIVKWRTLASERGRG 379 (394)
T ss_dssp SHHHHHHHHHHHHHTHHHH-TTTTTTHHHHHHHHHHHHHHHHS--CHHHHC--CCCGGGHHHHHHHHHHHHHCSE
T ss_pred CHHHHHHHHHHHHHHhHHH-hhcccchhhHHHHHHHHHhhccc--CCCChh--hccCcchhHHHHHHHHHHhccc
Confidence 21 11222345433 35678999999999999888764 347654 4456799999999999999765
No 9
>2gbw_A Biphenyl 2,3-dioxygenase alpha subunit; rieske oxygenase, oxidoreductase, non heme iron; 1.70A {Sphingobium yanoikuyae} PDB: 2gbx_A* 2ckf_A
Probab=100.00 E-value=7.3e-37 Score=329.51 Aligned_cols=188 Identities=14% Similarity=0.161 Sum_probs=147.8
Q ss_pred ccccccccccccccCCeEEeeecCCCC-CCCcEEEEECCEEEEEEEeCCCCeEEEEecCCCCCCCCCCCCcccCCCeEEe
Q 009277 73 ELETNSQEEKFDWFSQWYPLMPVCDLD-KRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQC 151 (538)
Q Consensus 73 ~~~~~~~e~~f~~~~~W~~v~~~~dL~-~g~~~~~~l~g~~lvv~r~~~~G~~~a~~d~CpHRga~Ls~G~v~~~~~l~C 151 (538)
.++.++.|.+.+|.+.|++||+++||+ +|+++.++++|++|+|+|+.+ |+++||+|+|||||++|+.|.++..+.|+|
T Consensus 22 ~~~~~~~E~~~if~~~W~~v~~~~el~~~g~~~~~~~~~~~vvv~R~~~-G~v~a~~n~CpHrga~L~~g~~g~~~~i~C 100 (454)
T 2gbw_A 22 DEDVYALEIERIFSRAWLMLGHESLVPKPGDFITTYMAEDKVILSHQSD-GTFRAFINSCSHRGNQICHADSGNAKAFVC 100 (454)
T ss_dssp CHHHHHHHHHHTTTTSCEEEEEGGGSCSTTEEEEEEETTEEEEEEECTT-SCEEEEESSCTTTCCCSCCCSEEECSEEEC
T ss_pred CHHHHHHHHHHHhhcCcEEEeEHHHCCCCCCeEEEEECCeEEEEEEcCC-CCEEEEeccCCCCCCCCcccccCCcCEEEe
Confidence 466678899999999999999999999 699999999999999999887 899999999999999999988743468999
Q ss_pred ccCCcEEeCCCCcccCCCCCCCCCCCCCccccccceeeEEEEcCeEEEccCCCCCccc-ccccCCCCCCCC-CCC--CCC
Q 009277 152 VYHGWCFSGSGDCKFIPQAPPDGPPVHTFEKACAAVYPSTVQHDIVWFWPNIAPRYKD-IIKTKKPPHIPE-LDD--PSF 227 (538)
Q Consensus 152 pYHGW~Fd~~G~c~~iP~~~~~~~~~~~~~~~~l~~~pv~~~~G~IwV~~~~~~~~~d-~~~~~~~p~~p~-l~~--~~~ 227 (538)
|||||+||.+|+|+.+|+.....+..+++++.+|++|+|++++|+||||++++++..+ .+.. ..+.+.. ++. .++
T Consensus 101 pyHgw~f~~~G~~~~~P~~~~~~~~~~~~~~~~l~~~~v~~~~G~v~v~~~~~~p~~~~~l~~-~~~~l~~~~~~~~~~~ 179 (454)
T 2gbw_A 101 NYHGWVFGQDGSLVDVPLESRCYHNSLDKQKLAAKSVRVETYKGFIFGCHDPEAPSLEDYLGE-FRYYLDTIWEGAGGGM 179 (454)
T ss_dssp TTTCCEEETTSCEEECTTTTTTTTTCCCGGGCCCCEEEEEEETTEEEEECCTTCCCHHHHHGG-GHHHHHHHHTTTTTCE
T ss_pred CCCCCEecCCCCcccCCcccccccccCCHhhCCCeeEEEEEECCEEEEEeCCCCCCHHHHhhh-hHHHHHHHHhcCCCce
Confidence 9999999999999999986532221245667889999999999999999987543221 1111 0011111 111 223
Q ss_pred cee--eeeeEEeechHHHHHhc-CCCCCCccccccccc
Q 009277 228 TKL--FGNRDIPYGYEVLLENL-MDPAHVPYAHYGLMR 262 (538)
Q Consensus 228 ~~~--~~~~~~~~~w~~l~EN~-lD~~H~~~~H~~~~~ 262 (538)
... ....++++|||+++||+ +|+||++++|+.+++
T Consensus 180 ~~~~~~~~~~~~~Nwk~~~EN~~~D~yH~~~~H~~~~~ 217 (454)
T 2gbw_A 180 ELLGPPMKSLLQCNWKVPAENFIGDGYHVGWTHAAALS 217 (454)
T ss_dssp EEEEEEEEEEESSCTHHHHHHHHHBCTTHHHHTHHHHH
T ss_pred EEEeeEEEEEeCCCccchhhhcCCccCCCCcCCHhHHh
Confidence 322 34568999999999999 799999999976654
No 10
>2bmo_A Oxygenase-alpha NBDO; nitrobenzene dioxygenase, nitroarene, rieske non-heme dioxygenase, substrate specificity iron- sulfur, metal-binding, NAD; 1.2A {Comamonas SP} SCOP: b.33.1.2 d.129.3.3 PDB: 2bmq_A 2bmr_A* 2hmj_A 2hml_A* 2hmn_A* 1o7n_A 1ndo_A 1o7g_A* 1o7h_A 1o7m_A 1eg9_A 1o7p_A* 1o7w_A 1uuv_A 1uuw_A 2hmk_A* 2hmm_A* 2hmo_A*
Probab=100.00 E-value=4.2e-37 Score=330.82 Aligned_cols=187 Identities=17% Similarity=0.174 Sum_probs=147.1
Q ss_pred ccccccccccccccCCeEEeeecCCCC-CCCcEEEEECCEEEEEEEeCCCCeEEEEecCCCCCCCCCCCCcccCCCeEEe
Q 009277 73 ELETNSQEEKFDWFSQWYPLMPVCDLD-KRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQC 151 (538)
Q Consensus 73 ~~~~~~~e~~f~~~~~W~~v~~~~dL~-~g~~~~~~l~g~~lvv~r~~~~G~~~a~~d~CpHRga~Ls~G~v~~~~~l~C 151 (538)
.++.++.|.+.+|.+.|++||+++||+ +|+++.++++|++|+|+|+++ |+++||.|+|||||++|+.|.++.++.|+|
T Consensus 21 ~~~~~~~E~~~if~~~W~~v~~~~el~~~g~~~~~~~~~~~vvv~R~~~-G~v~a~~n~CpHrga~L~~g~~g~~~~l~C 99 (447)
T 2bmo_A 21 DKELFQHELKTIFARNWLFLTHDSLIPSPGDYVKAKMGVDEVIVSRQND-GSVRAFLNVCRHRGKTLVHAEAGNAKGFVC 99 (447)
T ss_dssp CHHHHHHHHHHTTTTSCEEEEEGGGSCSTTEEEEEEETTEEEEEEECTT-SCEEEEESBCTTTCCBCCCSSEEECSEEEC
T ss_pred CHHHHHHHHHHhhccCCeEEeEHHHCCCCCCeEEEEECCeeEEEEECCC-CCEEEEeccCcCCCCCccccccCCcCeEEC
Confidence 456678899999999999999999998 689999999999999999887 899999999999999999998754478999
Q ss_pred ccCCcEEeCCCCcccCCCCCCCCCCCCCccccccceee-EEEEcCeEEEccCCCCCcccccccCCCCC---CCC-CC-CC
Q 009277 152 VYHGWCFSGSGDCKFIPQAPPDGPPVHTFEKACAAVYP-STVQHDIVWFWPNIAPRYKDIIKTKKPPH---IPE-LD-DP 225 (538)
Q Consensus 152 pYHGW~Fd~~G~c~~iP~~~~~~~~~~~~~~~~l~~~p-v~~~~G~IwV~~~~~~~~~d~~~~~~~p~---~p~-l~-~~ 225 (538)
|||||+||.+|+|+.+|+.....+..+++.+.+|++|| |++++|+|||+++++++..+ +...+. ++. ++ ..
T Consensus 100 pyHgw~f~~~G~~~~~P~~~~~~~~~~~~~~~~l~~~~~v~~~~G~v~v~~~~~~~~l~---~~l~~~~~~~~~~~~~~~ 176 (447)
T 2bmo_A 100 GYHGWGYGSNGELQSVPFEKELYGDAIKKKCLGLKEVPRIESFHGFIYGCFDAEAPPLI---DYLGDAAWYLEPTFKYSG 176 (447)
T ss_dssp TTTCCEEETTSCEEECTTHHHHTGGGCCGGGCCCCBCSEEEEETTEEEEESCTTCCCHH---HHHTTHHHHHHHHHTTTS
T ss_pred CCCcchhcCCCcccccCcccccccccCCHhHCCCcccceEEEECCEEEEEcCCCCCCHH---HHhccHHHHHHHHhccCC
Confidence 99999999999999999753211112445678899998 99999999999987543221 111111 111 11 22
Q ss_pred CCcee--eeeeEEeechHHHHHhc-CCCCCCcccccccccc
Q 009277 226 SFTKL--FGNRDIPYGYEVLLENL-MDPAHVPYAHYGLMRT 263 (538)
Q Consensus 226 ~~~~~--~~~~~~~~~w~~l~EN~-lD~~H~~~~H~~~~~~ 263 (538)
++... ....++++|||+++||+ +|+||++++|+++++.
T Consensus 177 ~~~~~~~~~~~~~~~nwk~~~EN~~~D~yH~~~~H~~~l~~ 217 (447)
T 2bmo_A 177 GLELVGPPGKVVVKANWKSFAENFVGDGYHVGWTHAAALRA 217 (447)
T ss_dssp CEEEEEEEEEEEESSCHHHHHHHHHHBCTTHHHHTHHHHHH
T ss_pred CeEEeeeeEEEEECCCcchhhhcCCCCCCCCcccchhhhhc
Confidence 34332 33568999999999999 7999999999877653
No 11
>2b1x_A Naphthalene dioxygenase large subunit; rieske non-heme iron oxygenase, oxidoreductase; 2.00A {Rhodococcus SP} SCOP: b.33.1.2 d.129.3.3 PDB: 2b24_A
Probab=100.00 E-value=2.3e-35 Score=319.15 Aligned_cols=188 Identities=14% Similarity=0.166 Sum_probs=146.1
Q ss_pred ccccccccccccccCCeEEeeecCCCC-CCCcEEEEECCEEEEEEEeCCCCeEEEEecCCCCCCCCCCCCcccCCCeEEe
Q 009277 73 ELETNSQEEKFDWFSQWYPLMPVCDLD-KRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQC 151 (538)
Q Consensus 73 ~~~~~~~e~~f~~~~~W~~v~~~~dL~-~g~~~~~~l~g~~lvv~r~~~~G~~~a~~d~CpHRga~Ls~G~v~~~~~l~C 151 (538)
.++-++.|.+.+|.+.|++||+++||+ +|+++.++++|++|+|+|+++ |+++||+|+|||||++|+.|.+++.+.|+|
T Consensus 30 d~~~~~~E~~~if~~~W~~v~~~~el~~~g~~~~~~~~g~~vvv~R~~~-G~v~a~~n~C~Hrga~L~~g~~~~~~~i~C 108 (470)
T 2b1x_A 30 DPEVHDVERERIFGHAWVFLAHESEIPERGDYVVRYISEDQFIVCRDEG-GEIRGHLNACRHRGMQVCRAEMGNTSHFRC 108 (470)
T ss_dssp CHHHHHHHHHHTTTTSCEEEEEGGGSCSTTEEEEEEETTEEEEEEECTT-SCEEEEESSCTTTCCCSCCSSEEECSEEEC
T ss_pred CHHHHHHHHHHHhhcCCeEeeeHHHCCCCCCeEEEEECCeEEEEEEcCC-CCEEEEecccCCCCCEeeccCcCCCCEEEE
Confidence 456678899999999999999999998 488999999999999999877 899999999999999999998764468999
Q ss_pred ccCCcEEeCCCCcccCCCCCCCCCCCCCcccccccee-eEEEEcCeEEEccCCCCCcc-cccccCCCCCCCC---CCCCC
Q 009277 152 VYHGWCFSGSGDCKFIPQAPPDGPPVHTFEKACAAVY-PSTVQHDIVWFWPNIAPRYK-DIIKTKKPPHIPE---LDDPS 226 (538)
Q Consensus 152 pYHGW~Fd~~G~c~~iP~~~~~~~~~~~~~~~~l~~~-pv~~~~G~IwV~~~~~~~~~-d~~~~~~~p~~p~---l~~~~ 226 (538)
|||||+||.||+|+.+|+.....+..+++++.++..+ .+++++|+||||++++++.. +.+... .+.++. ....+
T Consensus 109 pyHgw~f~~~G~~~~~P~~~~~~~~~~~~~~~~l~~~p~ve~~~G~Vfv~~~~~~~~~~~~l~~~-~~~~d~~~~~~~~~ 187 (470)
T 2b1x_A 109 PYHGWTYSNTGSLVGVPAGKDAYGNQLKKSDWNLRPMPNLASYKGLIFGSLDPHADSLEDYLGDL-KFYLDIVLDRSDAG 187 (470)
T ss_dssp TTTCCEEETTSCEEECTTTTTTTTTCCCGGGGSCCBCSEEEEETTEEEEESCTTCCCHHHHHGGG-HHHHHHHHCSSSSC
T ss_pred CCCCCeecCCCceeecCcccccccccCCHhhCCCcccceEEEECCEEEEEeCCCCCCHHHHhcch-hHHHHHHhccCCCC
Confidence 9999999999999999986432221245566788888 57778999999998654322 111100 001110 01223
Q ss_pred Ccee--eeeeEEeechHHHHHhc-CCCCCCccccccccc
Q 009277 227 FTKL--FGNRDIPYGYEVLLENL-MDPAHVPYAHYGLMR 262 (538)
Q Consensus 227 ~~~~--~~~~~~~~~w~~l~EN~-lD~~H~~~~H~~~~~ 262 (538)
+... ....++++|||+++||+ +|+||++++|+++++
T Consensus 188 ~~~~~~~~~~~~~~NWk~~~EN~~~D~yH~~~~H~~~~~ 226 (470)
T 2b1x_A 188 LQVVGAPQRWVIDANWKLGADNFVGDAYHTMMTHRSMVE 226 (470)
T ss_dssp EEECSCCEEEEESSCTHHHHHHHHHCCTTHHHHTHHHHH
T ss_pred eEEEeeeEEEEeccCHhhhhhccccccCcccccChhhhh
Confidence 3322 34568899999999999 999999999998764
No 12
>1uli_A Biphenyl dioxygenase large subunit; alpha3 BETA3 hetero hexamer, oxidoreductase; 2.20A {Rhodococcus SP} SCOP: b.33.1.2 d.129.3.3 PDB: 1ulj_A* 3en1_A* 3eqq_A
Probab=100.00 E-value=2.2e-34 Score=310.58 Aligned_cols=186 Identities=16% Similarity=0.165 Sum_probs=143.7
Q ss_pred ccccccccccccccCCeEEeeecCCCC-CCCcEEEEECCEEEEEEEeCCCCeEEEEecCCCCCCCCCCCCcccCCCeEEe
Q 009277 73 ELETNSQEEKFDWFSQWYPLMPVCDLD-KRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQC 151 (538)
Q Consensus 73 ~~~~~~~e~~f~~~~~W~~v~~~~dL~-~g~~~~~~l~g~~lvv~r~~~~G~~~a~~d~CpHRga~Ls~G~v~~~~~l~C 151 (538)
.++.++.|.+.+|.+.|++||+++||+ +|+++.++++|++|+|+|+.+ |+++||.|+|||||++|+.|..+..+.|+|
T Consensus 40 d~~~~~~E~~~if~~~W~~v~~~~el~~~g~~~~~~i~~~~vvv~R~~~-G~v~a~~n~CpHrga~L~~g~~g~~~~i~C 118 (460)
T 1uli_A 40 DEALYEQELERIFGRSWLLMGHETQIPKAGDFMTNYMGEDPVMVVRQKN-GEIRVFLNQCRHRGMRICRADGGNAKSFTC 118 (460)
T ss_dssp CHHHHHHHHHHTTTTSCEEEEEGGGSCSTTEEEEEEETTEEEEEEECTT-SCEEEEESCCTTTCCCSCCSSEEECSCEEC
T ss_pred CHHHHHHHHHHhhhcCceEEEEHHHCCCCCCeEEEEECCeEEEEEEcCC-CCEEEEeeeCCCCCCCCccccCCCCCEEEc
Confidence 456678899999999999999999998 588899999999999999877 899999999999999999988753468999
Q ss_pred ccCCcEEeCCCCcccCCCCCCCCCCCCCccccccceeeEEEEcCeEEEccCCCCCcc-cccccCCCCCCCC-CCC--CCC
Q 009277 152 VYHGWCFSGSGDCKFIPQAPPDGPPVHTFEKACAAVYPSTVQHDIVWFWPNIAPRYK-DIIKTKKPPHIPE-LDD--PSF 227 (538)
Q Consensus 152 pYHGW~Fd~~G~c~~iP~~~~~~~~~~~~~~~~l~~~pv~~~~G~IwV~~~~~~~~~-d~~~~~~~p~~p~-l~~--~~~ 227 (538)
|||||+||.+|+|+.+|+.....+ .+++.+.+|++|+|++++|+|||+++++++.. +.+.. ..+.+.. ++. .++
T Consensus 119 pyHgw~fd~~G~~~~~P~~~~~~~-~~~~~~~~L~~~~v~~~~G~V~v~~~~~~p~l~~~l~~-~~~~l~~~~~~~~~~~ 196 (460)
T 1uli_A 119 SYHGWAYDTGGNLVSVPFEEQAFP-GLRKEDWGPLQARVETYKGLIFANWDADAPDLDTYLGE-AKFYMDHMLDRTEAGT 196 (460)
T ss_dssp TTTCCEECTTCCEEECTTHHHHCT-TCCGGGSSCCEEEEEEETTEEEEECCTTSCCHHHHHTT-HHHHHHHHHCSSTTCE
T ss_pred CCCCCEEeCCCCEeeCCccccccC-CCCHhHcCCceeeEEEECCEEEEEeCCCCCCHHHHhcc-hHHHHHHHhhcCCCce
Confidence 999999999999999997532111 24566788999999999999999998764322 11110 0011111 111 122
Q ss_pred ce--eeeeeEEeechHHHHHhc-CCCCCC-cccccccc
Q 009277 228 TK--LFGNRDIPYGYEVLLENL-MDPAHV-PYAHYGLM 261 (538)
Q Consensus 228 ~~--~~~~~~~~~~w~~l~EN~-lD~~H~-~~~H~~~~ 261 (538)
.. .....++++|||+++||+ +|+||+ .++|...+
T Consensus 197 ~~~~~~~~~~~~~Nwk~~~EN~~~D~yH~~~~~H~~~~ 234 (460)
T 1uli_A 197 EAIPGIQKWVIPCNWKFAAEQFCSDMYHAGTTSHLSGI 234 (460)
T ss_dssp EECSCCEEEEECSCHHHHHHHHHHBHHHHHTTTTHHHH
T ss_pred EEEeeEEEEEeccCHHHHHhhcCCCCCCchhhhhhhcc
Confidence 22 123468999999999999 799999 69998554
No 13
>3gzx_A Biphenyl dioxygenase subunit alpha; rieskie, non-heme iron, 2Fe-2S, aromatic hydroc catabolism, iron, iron-sulfur, metal-binding, NAD; HET: BNL MES; 1.58A {Comamonas testosteroni} PDB: 3gzy_A* 1wql_A 2xso_A 2xsh_A 2xrx_A* 2xr8_A* 2yfi_A 2yfj_A* 2yfl_A*
Probab=100.00 E-value=6.8e-35 Score=313.01 Aligned_cols=186 Identities=15% Similarity=0.141 Sum_probs=148.0
Q ss_pred ccccccccccccccCCeEEeeecCCCC-CCCcEEEEECCEEEEEEEeCCCCeEEEEecCCCCCCCCCCCCcccCCCeEEe
Q 009277 73 ELETNSQEEKFDWFSQWYPLMPVCDLD-KRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQC 151 (538)
Q Consensus 73 ~~~~~~~e~~f~~~~~W~~v~~~~dL~-~g~~~~~~l~g~~lvv~r~~~~G~~~a~~d~CpHRga~Ls~G~v~~~~~l~C 151 (538)
.++.++.|.+.+|.+.|++|++++||+ +|++++++++|++|||+|+.+ |+++||.|+|||||++|+.|..+..+.|+|
T Consensus 42 d~~~~~~E~~~if~~~W~~v~~~~elp~~G~~~~~~i~~~~vvv~R~~d-G~v~A~~n~C~Hrga~L~~g~~g~~~~i~C 120 (457)
T 3gzx_A 42 DQDLYQLELERVFGRSWLMLGHETHIPKIGDYLTTYMGEDPVIMVRQKD-QSIKVFLNQCRHRGMRIVRSDGGNAKAFTC 120 (457)
T ss_dssp CHHHHHHHHHHTTTTSCEEEEEGGGSCSTTEEEEEEETTEEEEEEECTT-SCEEEEESCCTTTCCCSCCSSEEECSEEEC
T ss_pred CHHHHHHHHHHHHhcCCEEEeEHHHcCCCCCeEEEEECCEEEEEEECCC-CeEEEEeCcCCCCCcCccCCCCCcCCEEEc
Confidence 467788899999999999999999998 689999999999999999987 899999999999999999987543478999
Q ss_pred ccCCcEEeCCCCcccCCCCCCCC-----CCC-CCccccccceeeEEEEcCeEEEccCCCCCcccccccCCCCCC---CC-
Q 009277 152 VYHGWCFSGSGDCKFIPQAPPDG-----PPV-HTFEKACAAVYPSTVQHDIVWFWPNIAPRYKDIIKTKKPPHI---PE- 221 (538)
Q Consensus 152 pYHGW~Fd~~G~c~~iP~~~~~~-----~~~-~~~~~~~l~~~pv~~~~G~IwV~~~~~~~~~d~~~~~~~p~~---p~- 221 (538)
|||||+||.+|+|+.+|+..... ... +++.+.+|+.|||.+++|+||||++++++.. .+...+.. +.
T Consensus 121 pyHgw~fd~~G~~~~~P~~~~~~~~~~~~~~~~~~~~~~L~~~~v~e~~G~Vfv~~~~~ap~l---~e~lg~~~~~ld~~ 197 (457)
T 3gzx_A 121 TYHGWAYDIAGNLVNVPFEKEAFCDKKEGDCGFDKADWGPLQARVETYKGLVFANWDPEAPDL---KTYLSDAMPYMDVM 197 (457)
T ss_dssp TTTCCEEETTSCEEECTTHHHHTCSSSTTTTSCCGGGCCCCEEEEEEETTEEEEESCTTSCCH---HHHTTTCHHHHHHH
T ss_pred CCCCCEecCCCcceecCccccccccccccccccChhhCCCceEeEEEECCEEEEecCCCCCCh---HHHHhhhHHHHHHH
Confidence 99999999999999999853211 112 4466788999999999999999998764322 11222211 11
Q ss_pred CCC--CCCcee--eeeeEEeechHHHHHhc-CCCCCCc-cccccccc
Q 009277 222 LDD--PSFTKL--FGNRDIPYGYEVLLENL-MDPAHVP-YAHYGLMR 262 (538)
Q Consensus 222 l~~--~~~~~~--~~~~~~~~~w~~l~EN~-lD~~H~~-~~H~~~~~ 262 (538)
++. .++... ....++++|||+++||+ +|+||++ ++|..++.
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~NWKl~~EN~~~D~yH~~~~~H~~~~~ 244 (457)
T 3gzx_A 198 LDRTEAGTEAIGGIQKWVIPCNWKFAAEQFCSDMYHAGTMSHLSGVL 244 (457)
T ss_dssp HSSSTTCEEECSCCEEEEESSCHHHHHHHHHHBCTTTTTTTTHHHHH
T ss_pred hccCCCceEEEcceEEEEEccccchhhhccccccCCcccceehhhhh
Confidence 121 133322 24578899999999999 8999999 99998764
No 14
>2qpz_A Naphthalene 1,2-dioxygenase system ferredoxin subunit; rieske ferredoxin, 2Fe-2S, aromatic hydrocarbons catabolism, electron transport, iron; 1.85A {Pseudomonas putida}
Probab=99.93 E-value=7.3e-26 Score=195.10 Aligned_cols=101 Identities=18% Similarity=0.301 Sum_probs=92.2
Q ss_pred CCeEEeeecCCCCCCCcEEEEECCEEEEEEEeCCCCeEEEEecCCCCCCCCCCCCcccCCCeEEeccCCcEEeC-CCCcc
Q 009277 87 SQWYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCVYHGWCFSG-SGDCK 165 (538)
Q Consensus 87 ~~W~~v~~~~dL~~g~~~~~~l~g~~lvv~r~~~~G~~~a~~d~CpHRga~Ls~G~v~~~~~l~CpYHGW~Fd~-~G~c~ 165 (538)
..|++|+.++||++|+++.+++.|++|+|+| .+ |+++||+|+|||||++|+.|.+++ +.|+||||||+||. +|+|+
T Consensus 2 ~~w~~v~~~~~l~~g~~~~~~~~g~~i~v~r-~~-g~~~A~~~~CpH~g~~L~~g~~~~-~~i~Cp~Hg~~Fd~~~G~~~ 78 (103)
T 2qpz_A 2 VKWIEAVALSDILEGDVLGVTVEGKELALYE-VE-GEIYATDNLCTHGSARMSDGYLEG-REIECPLHQGRFDVCTGKAL 78 (103)
T ss_dssp CCEEEEEETTSCCTTCEEEEEETTEEEEEEE-ET-TEEEEEESBCSSSSCBGGGSEEET-TEEECTTTTCEEETTTCCEE
T ss_pred CccEEEEEHHHcCCCCEEEEEECCEEEEEEE-EC-CEEEEECCcCCCCCCCCCCCeEeC-CEEECCCCCCEEeCCCCCEe
Confidence 3699999999999999999999999999999 45 899999999999999999999874 79999999999996 99999
Q ss_pred cCCCCCCCCCCCCCccccccceeeEEEEcCeEEEccC
Q 009277 166 FIPQAPPDGPPVHTFEKACAAVYPSTVQHDIVWFWPN 202 (538)
Q Consensus 166 ~iP~~~~~~~~~~~~~~~~l~~~pv~~~~G~IwV~~~ 202 (538)
..|.. .+|++||+++++|.|||+++
T Consensus 79 ~~P~~------------~~L~~~~v~~~~g~v~v~~~ 103 (103)
T 2qpz_A 79 CAPVT------------QNIKTYPVKIENLRVMIDLS 103 (103)
T ss_dssp ETTCC------------SCCCEECEEEETTEEEEECC
T ss_pred CCCCC------------CCCCEEeEEEECCEEEEEcC
Confidence 98852 25899999999999999874
No 15
>2i7f_A Ferredoxin component of dioxygenase; rieske ferredoxin, oxidoreductase; HET: CIT; 1.90A {Sphingobium yanoikuyae}
Probab=99.93 E-value=6.3e-26 Score=197.26 Aligned_cols=102 Identities=24% Similarity=0.315 Sum_probs=92.6
Q ss_pred CeEEeeecCCCCCCCcEEEEECCEE-EEEEEeCCCCeEEEEecCCCCCCCCCCCCcccCCCeEEeccCCcEEe-CCCCcc
Q 009277 88 QWYPLMPVCDLDKRVPHAKKVLGLD-VVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCVYHGWCFS-GSGDCK 165 (538)
Q Consensus 88 ~W~~v~~~~dL~~g~~~~~~l~g~~-lvv~r~~~~G~~~a~~d~CpHRga~Ls~G~v~~~~~l~CpYHGW~Fd-~~G~c~ 165 (538)
.|++|+.++||++|+++.+++.|++ |+|+|+ + |+++|++|+|||||++|++|.+++ +.|+||||||+|| .+|+|+
T Consensus 3 ~w~~v~~~~~l~~g~~~~~~~~g~~~v~v~r~-~-g~~~A~~~~CpH~g~~L~~g~~~~-~~i~Cp~Hg~~Fdl~tG~~~ 79 (108)
T 2i7f_A 3 NKLRLCQVASVKDGEPVAVYQEKMPALAVYNV-D-GEVFVTDNLCTHGNAMLTDGYQDG-TIIECPFHGGSFDIATGAAK 79 (108)
T ss_dssp CEEEEEEGGGCBTTBCEEECCTTSSCEEEEEE-T-TEEEEEESBCSSSSCBGGGSEEET-TEEECSSTTCEEETTTCCBC
T ss_pred ccEEEEEHhHcCCCCeEEEEECCeeEEEEEEE-C-CEEEEEeCcCCCCCCCCCCCEEeC-CEEEcCCCCCEEeCCCcCEe
Confidence 5999999999999999999999999 999998 5 899999999999999999999874 7999999999999 599999
Q ss_pred cCCCCCCCCCCCCCccccccceeeEEEEcCeEEEccCCC
Q 009277 166 FIPQAPPDGPPVHTFEKACAAVYPSTVQHDIVWFWPNIA 204 (538)
Q Consensus 166 ~iP~~~~~~~~~~~~~~~~l~~~pv~~~~G~IwV~~~~~ 204 (538)
..|.. ..|++|||++++|.|||+++++
T Consensus 80 ~~P~~------------~~L~~~~v~~~~g~v~v~~~~~ 106 (108)
T 2i7f_A 80 AFPCQ------------IPIKTYPVTIEDGWVCIDQPKE 106 (108)
T ss_dssp STTCC------------SCCCEECEEEETTEEEEECC--
T ss_pred CCCCC------------CCccEEeEEEECCEEEEeCCCC
Confidence 98852 3599999999999999998753
No 16
>2de6_D Ferredoxin component of carbazole; electron transfer complex, rieske non-heme iron oxygenase system, terminal oxygenase; 1.80A {Pseudomonas resinovorans} PDB: 2de5_D 1vck_A 2de7_D*
Probab=99.93 E-value=6.8e-26 Score=199.43 Aligned_cols=104 Identities=21% Similarity=0.381 Sum_probs=93.9
Q ss_pred CCeEEeeecCCCCCCCcEEEEECCE-EEEEEEeCCCCeEEEEecCCCCCCCCCCCCcccCCCeEEeccCCcEEeC-CCCc
Q 009277 87 SQWYPLMPVCDLDKRVPHAKKVLGL-DVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCVYHGWCFSG-SGDC 164 (538)
Q Consensus 87 ~~W~~v~~~~dL~~g~~~~~~l~g~-~lvv~r~~~~G~~~a~~d~CpHRga~Ls~G~v~~~~~l~CpYHGW~Fd~-~G~c 164 (538)
+.|++|+.++||++|+++.+++.|+ +|+|+|+ + |+++||+|+|||||++|++|.+++ +.|+||||||+||. +|+|
T Consensus 3 ~~w~~v~~~~el~~g~~~~~~~~g~~~v~v~r~-~-g~~~A~~n~CpH~g~~L~~g~~~~-~~i~CP~Hg~~Fdl~tG~~ 79 (115)
T 2de6_D 3 QIWLKVCAASDMQPGTIRRVNRVGAAPLAVYRV-G-DQFYATEDTCTHGIASLSEGTLDG-DVIECPFHGGAFNVCTGMP 79 (115)
T ss_dssp -CCEEEEEGGGCCTTEEEEEEETTEEEEEEEEE-T-TEEEEEESBCTTSSCBGGGSEEET-TEEECTTTCCEEETTTCCE
T ss_pred cceEEeEEHHHCCCCCeEEEEECCccEEEEEEE-C-CEEEEEeCCCCCCCCCCcCCEEeC-CEEECCCCCCEEcCCCcCE
Confidence 5799999999999999999999999 9999998 5 899999999999999999999874 79999999999995 9999
Q ss_pred ccCCCCCCCCCCCCCccccccceeeEEEEcCeEEEccCCCC
Q 009277 165 KFIPQAPPDGPPVHTFEKACAAVYPSTVQHDIVWFWPNIAP 205 (538)
Q Consensus 165 ~~iP~~~~~~~~~~~~~~~~l~~~pv~~~~G~IwV~~~~~~ 205 (538)
+.+|.. ..|++|||++++|.|||++++++
T Consensus 80 ~~~P~~------------~~L~~~~v~~~~g~V~v~~~~~~ 108 (115)
T 2de6_D 80 ASSPCT------------VPLGVFEVEVKEGEVYVAGEKKL 108 (115)
T ss_dssp EETTCC------------SCCCEEEEEESSSEEEEEEEEC-
T ss_pred eCCCCc------------CCCCEEEEEEECCEEEEecCCcc
Confidence 998852 35999999999999999987544
No 17
>1fqt_A Rieske-type ferredoxin of biphenyl dioxygenase; 2Fe-2S cluster, beta sandwich, oxido; 1.60A {Burkholderia xenovorans} SCOP: b.33.1.1 PDB: 2e4q_A 2e4p_A 2yvj_B*
Probab=99.93 E-value=1.7e-25 Score=195.85 Aligned_cols=103 Identities=17% Similarity=0.222 Sum_probs=93.6
Q ss_pred CCeEEeeecCCCCCCCcEEEEECCEEEEEEEeCCCCeEEEEecCCCCCCCCCCCC-cccCCCeEEeccCCcEEeC-CCCc
Q 009277 87 SQWYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEG-RIDQWGRLQCVYHGWCFSG-SGDC 164 (538)
Q Consensus 87 ~~W~~v~~~~dL~~g~~~~~~l~g~~lvv~r~~~~G~~~a~~d~CpHRga~Ls~G-~v~~~~~l~CpYHGW~Fd~-~G~c 164 (538)
..|++|+.++||++|+++.+++.|++|+|+|+ + |+++||+|+|||||++|++| .++ ++.|+||||||+||. +|+|
T Consensus 4 ~~w~~v~~~~~l~~g~~~~~~~~g~~i~v~r~-~-g~~~A~~n~CpH~g~~L~~g~~~~-~~~i~CP~Hg~~Fd~~tG~~ 80 (112)
T 1fqt_A 4 MKFTRVCDRRDVPEGEALKVESGGTSVAIFNV-D-GELFATQDRCTHGDWSLSDGGYLE-GDVVECSLHMGKFCVRTGKV 80 (112)
T ss_dssp CCCEEEEEGGGSCTTCEEEEEETTEEEEEEEE-T-TEEEEEESBCTTSSCBSSTTCCEE-TTEEECTTTCCEEETTTCCE
T ss_pred cceEEeEeHHHCCCCCeEEEEECCEEEEEEEE-C-CEEEEEECCCCCCCcCCCCCCEEc-CCEEECCCCCCEEeCCCCcE
Confidence 35999999999999999999999999999998 5 89999999999999999999 776 479999999999997 8999
Q ss_pred ccCCCCCCCCCCCCCccccccceeeEEEEcCeEEEccCCC
Q 009277 165 KFIPQAPPDGPPVHTFEKACAAVYPSTVQHDIVWFWPNIA 204 (538)
Q Consensus 165 ~~iP~~~~~~~~~~~~~~~~l~~~pv~~~~G~IwV~~~~~ 204 (538)
+..|.. .+|++||+++++|+|||+++++
T Consensus 81 ~~~P~~------------~~L~~~~v~~~~g~v~v~~~~~ 108 (112)
T 1fqt_A 81 KSPPPC------------EALKIFPIRIEDNDVLVDFEAG 108 (112)
T ss_dssp EESSCC------------SCCCBCCEEEETTEEEECTTCC
T ss_pred eCCCCC------------CCccEEEEEEECCEEEEEeccc
Confidence 998852 3589999999999999998753
No 18
>1vm9_A Toluene-4-monooxygenase system protein C; structural genomics, CESG, protein structure initiative, PSI, ferredoxin, FES, [2Fe-2S] cluster; 1.48A {Pseudomonas mendocina} SCOP: b.33.1.1 PDB: 2q3w_A 1sjg_A
Probab=99.93 E-value=1.5e-25 Score=195.78 Aligned_cols=103 Identities=22% Similarity=0.365 Sum_probs=92.9
Q ss_pred CeEEeeecCCCCCCCcEEEEE-CCEEEEEEEeCCCCeEEEEecCCCCCCCCCCCCcccCCCeEEeccCCcEEeC-CCCcc
Q 009277 88 QWYPLMPVCDLDKRVPHAKKV-LGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCVYHGWCFSG-SGDCK 165 (538)
Q Consensus 88 ~W~~v~~~~dL~~g~~~~~~l-~g~~lvv~r~~~~G~~~a~~d~CpHRga~Ls~G~v~~~~~l~CpYHGW~Fd~-~G~c~ 165 (538)
.|++|+.++||++|+++.+++ .|++|+|+|+.+ |+++||+|+|||||++|+.|.+++ +.|+||||||+||. +|+|+
T Consensus 1 ~W~~v~~~~~l~~g~~~~~~~~~g~~v~v~r~~~-g~~~A~~~~CpH~g~~L~~g~~~~-~~i~Cp~Hg~~Fd~~tG~~~ 78 (111)
T 1vm9_A 1 SFEKICSLDDIWVGEMETFETSDGTEVLIVNSEE-HGVKAYQAMCPHQEILLSEGSYEG-GVITCRAHLWTFNDGTGHGI 78 (111)
T ss_dssp CCEEEEEGGGSCTTCEEEEECTTCCEEEEEEETT-TEEEEEESBCSSSSCBGGGSEEET-TEEECTTTCCEEETTTCBBS
T ss_pred CcEEEEEHHHCCCCCeEEEEEcCCCEEEEEEeCC-CeEEEEeCcCCCCCcCCCCceEcC-CEEEcCCCCCEEeCCCccCC
Confidence 599999999999999999999 999999999876 899999999999999999999874 79999999999997 59999
Q ss_pred cCCCCCCCCCCCCCccccccceeeEEEEcCeEEEccCCCC
Q 009277 166 FIPQAPPDGPPVHTFEKACAAVYPSTVQHDIVWFWPNIAP 205 (538)
Q Consensus 166 ~iP~~~~~~~~~~~~~~~~l~~~pv~~~~G~IwV~~~~~~ 205 (538)
. |. ...|++||+++++|+|||++++++
T Consensus 79 ~-p~------------~~~L~~~~v~~~~g~v~v~~~~~~ 105 (111)
T 1vm9_A 79 N-PD------------DAALAEYPVEVKGDDIYVSTKGIL 105 (111)
T ss_dssp S-SS------------SCBCCEECEEEETTEEEECCTTCC
T ss_pred C-CC------------cCCcCEEEEEEECCEEEEeccCcC
Confidence 8 53 235999999999999999997643
No 19
>3dqy_A Toluene 1,2-dioxygenase system ferredoxin subunit; rieske, iron-sulfur cluster, 2Fe-2S, aromatic hydrocarbons catabolism, electron transport; 1.20A {Pseudomonas putida} SCOP: b.33.1.0 PDB: 4emj_B*
Probab=99.92 E-value=1.1e-25 Score=195.14 Aligned_cols=101 Identities=24% Similarity=0.281 Sum_probs=92.7
Q ss_pred CeEEeeecCCCCCCCcEEEEECCEEEEEEEeCCCCeEEEEecCCCCCCCCCCCCcccCCCeEEeccCCcEEe-CCCCccc
Q 009277 88 QWYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCVYHGWCFS-GSGDCKF 166 (538)
Q Consensus 88 ~W~~v~~~~dL~~g~~~~~~l~g~~lvv~r~~~~G~~~a~~d~CpHRga~Ls~G~v~~~~~l~CpYHGW~Fd-~~G~c~~ 166 (538)
+|++|+.++||++|+++.+++.|++|+|+|. + |+++|++|+|||||++|++|.+++ +.|+||||||+|| .+|+|+.
T Consensus 1 ~W~~v~~~~~l~~g~~~~~~~~g~~i~v~r~-~-g~~~A~~~~CpH~g~~L~~g~~~~-~~i~Cp~Hg~~Fdl~~G~~~~ 77 (106)
T 3dqy_A 1 TWTYILRQGDLPPGEMQRYEGGPEPVMVCNV-D-GEFFAVQDTCTHGDWALSDGYLDG-DIVECTLHFGKFCVRTGKVKA 77 (106)
T ss_dssp CCEEEEEGGGSCTTCEEEECCSSSCEEEEEE-T-TEEEEEESBCSSSSCBGGGSEEET-TEEECTTTCCEEETTTCCEEE
T ss_pred CcEEEEEHHHCCCCCEEEEEECCEEEEEEEE-C-CEEEEEeCcCCCCCCCCcCcEEeC-CEEECCCCCCEEeCCCCCEeC
Confidence 5999999999999999999999999999985 4 899999999999999999999874 7999999999999 6999999
Q ss_pred CCCCCCCCCCCCCccccccceeeEEEEcCeEEEccCC
Q 009277 167 IPQAPPDGPPVHTFEKACAAVYPSTVQHDIVWFWPNI 203 (538)
Q Consensus 167 iP~~~~~~~~~~~~~~~~l~~~pv~~~~G~IwV~~~~ 203 (538)
.|+. ..|++||+++++|.|||++++
T Consensus 78 ~P~~------------~~L~~~~v~~~~g~v~v~~~~ 102 (106)
T 3dqy_A 78 LPAC------------KPIKVFPIKVEGDEVHVDLDN 102 (106)
T ss_dssp TTCC------------SCCCEECEEEETTEEEECGGG
T ss_pred CCCC------------CCccEEEEEEECCEEEEEccc
Confidence 8852 358999999999999999864
No 20
>2jo6_A Nitrite reductase [NAD(P)H] small subunit; all beta, ISP domain, rieske iron-sulfur protein, 3-layer sandwich, structural genomics, PSI-2; NMR {Escherichia coli} SCOP: b.33.1.3
Probab=99.92 E-value=2.1e-25 Score=195.49 Aligned_cols=102 Identities=18% Similarity=0.170 Sum_probs=91.9
Q ss_pred CCeEEeeecCCCCCCCcEEEEECCEEEEEEEeCCCC-eEEEEecCCCCCCC-CCCCCcccC-CC--eEEeccCCcEEeC-
Q 009277 87 SQWYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNEN-EWRVFADACPHRLA-PLSEGRIDQ-WG--RLQCVYHGWCFSG- 160 (538)
Q Consensus 87 ~~W~~v~~~~dL~~g~~~~~~l~g~~lvv~r~~~~G-~~~a~~d~CpHRga-~Ls~G~v~~-~~--~l~CpYHGW~Fd~- 160 (538)
..|++|+.++||++|+++.+++.|++|+|||+.+ | +++||+|+||||++ +|++|.+++ ++ .|+||||||+||.
T Consensus 5 ~~w~~v~~~~el~~g~~~~~~~~g~~i~v~r~~~-g~~~~A~~n~CpH~g~~~L~~G~~~~~~g~~~i~CP~Hg~~Fd~~ 83 (113)
T 2jo6_A 5 SQWKDICKIDDILPETGVCALLGDEQVAIFRPYH-SDQVFAISNIDPFFESSVLSRGLIAEHQGELWVASPLKKQRFRLS 83 (113)
T ss_dssp CCCEEEEETTTSCTTEEEEEEETTEEEEEEECSS-SSCCEEEESSCSSSCCSCSTTSEEEEETTEEEEEETTTTEEEETT
T ss_pred chheEEeeHHHCCCCCeEEEEECCEEEEEEEECC-CCEEEEEeCcCCCCCCcccCCeEEeccCCCcEEECCCCCCEEeCC
Confidence 4599999999999999999999999999999866 8 69999999999999 799999862 23 7999999999997
Q ss_pred CCCcccCCCCCCCCCCCCCccccccceeeEEEEcCeEEEccC
Q 009277 161 SGDCKFIPQAPPDGPPVHTFEKACAAVYPSTVQHDIVWFWPN 202 (538)
Q Consensus 161 ~G~c~~iP~~~~~~~~~~~~~~~~l~~~pv~~~~G~IwV~~~ 202 (538)
+|+|+..|. .+|++|||++++|.|||+++
T Consensus 84 tG~~~~~P~-------------~~l~~~~v~v~~g~V~v~~~ 112 (113)
T 2jo6_A 84 DGLCMEDEQ-------------FSVKHYEARVKDGVVQLRGG 112 (113)
T ss_dssp TTEETTTTT-------------TCCCEEEEEEETTEEEEECC
T ss_pred CccCCCCCc-------------ccccEEeEEEECCEEEEEcC
Confidence 999999884 24899999999999999975
No 21
>2jza_A Nitrite reductase [NAD(P)H] small subunit; ISP domain, rieske iron-sulfur protein, 3-layer beta- sandwich; NMR {Pectobacterium atrosepticum SCRI1043} SCOP: b.33.1.3
Probab=99.92 E-value=4.3e-25 Score=198.49 Aligned_cols=107 Identities=19% Similarity=0.150 Sum_probs=94.2
Q ss_pred CCeEEeeecCCCCCCCcEEEEECCEEEEEEEeCCCCeEEEEecCCCCCCC-CCCCCcccC-CC--eEEeccCCcEEeC-C
Q 009277 87 SQWYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLA-PLSEGRIDQ-WG--RLQCVYHGWCFSG-S 161 (538)
Q Consensus 87 ~~W~~v~~~~dL~~g~~~~~~l~g~~lvv~r~~~~G~~~a~~d~CpHRga-~Ls~G~v~~-~~--~l~CpYHGW~Fd~-~ 161 (538)
..|++|+.++||++|+++.+++.|++|+|+|+.++|+++||+|+|||||+ +|++|.+++ +| .|+||||||+||. +
T Consensus 2 ~~w~~v~~~~el~~g~~~~~~~~g~~i~v~r~~~g~~v~A~~n~CpH~g~~~L~~G~~~~~~g~~~i~CP~Hg~~Fdl~t 81 (130)
T 2jza_A 2 SQWTTVCKLDDILPGTGVCALVEQQQIAVFRPRNDEQVYAISNIDPFAQASVLSRGIVAEHQDDLWVASPLKKQHFRLYD 81 (130)
T ss_dssp CSEEEEEETTTSCTTBCCEEEETTEEEEEEBCSSSSCCEEEBCCCTTTSSGGGTSSEEEESSSSEEEECSSSCCEEETTT
T ss_pred CceEEEEEHHHCCCCCeEEEEECCcEEEEEEECCCCEEEEEeCcCCCCCCCcCCCccCcccCCCeEEECCCCCCEEeCCC
Confidence 36999999999999999999999999999998662399999999999999 599998862 22 8999999999996 9
Q ss_pred CCcccCCCCCCCCCCCCCccccccceeeEEEEcCeEEEccCCCCC
Q 009277 162 GDCKFIPQAPPDGPPVHTFEKACAAVYPSTVQHDIVWFWPNIAPR 206 (538)
Q Consensus 162 G~c~~iP~~~~~~~~~~~~~~~~l~~~pv~~~~G~IwV~~~~~~~ 206 (538)
|+|+.+|. .+|++|||++++|.|||++++++.
T Consensus 82 G~~~~~P~-------------~~L~~~~v~v~~g~V~V~~~~~~~ 113 (130)
T 2jza_A 82 GFCLEDGA-------------YSVAAYDTQVTNGNVQISIADSDV 113 (130)
T ss_dssp CCBSSCCS-------------SCCBCCCEEESSSEEEEECCCCCC
T ss_pred cCCCCCCc-------------CcceEEEEEEECCEEEEEeCCCCC
Confidence 99999884 358999999999999999976543
No 22
>3gce_A Ferredoxin component of carbazole 1,9A- dioxygenase; rieske ferredoxin, 2Fe-2S, electron transfer, oxidoreductase; 2.00A {Nocardioides aromaticivorans}
Probab=99.92 E-value=6.8e-25 Score=194.79 Aligned_cols=103 Identities=23% Similarity=0.257 Sum_probs=92.8
Q ss_pred CCeEEeeecCCCCCCCcEEEEECCEEEEEEEeCCCCeEEEEecCCCCCCCCCCCC--cccCCCeEEeccCCcEEe-CCCC
Q 009277 87 SQWYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEG--RIDQWGRLQCVYHGWCFS-GSGD 163 (538)
Q Consensus 87 ~~W~~v~~~~dL~~g~~~~~~l~g~~lvv~r~~~~G~~~a~~d~CpHRga~Ls~G--~v~~~~~l~CpYHGW~Fd-~~G~ 163 (538)
..|++|+.++||++|+++.+++.|++|+|+|+ + |+++|++|+|||||++|++| .++ ++.|+||||||+|| .+|+
T Consensus 9 ~~w~~v~~~~el~~g~~~~~~~~g~~v~v~r~-~-g~~~A~~n~CpH~g~~L~~G~~~~~-~~~i~CP~Hg~~Fdl~tG~ 85 (121)
T 3gce_A 9 STPVRVATLDQLKPGVPTAFDVDGDEVMVVRD-G-DSVYAISNLCSHAEAYLDMGVFHAE-SLEIECPLHVGRFDVRTGA 85 (121)
T ss_dssp CCCEEEEEGGGSCTTCCEEEEETTEEEEEEEE-T-TEEEEEESBCSSSSCBGGGSEEETT-TTEEECTTTCCEEETTTCC
T ss_pred cCcEEEEEHHHCCCCCEEEEEECCEEEEEEEE-C-CEEEEEeCcCCCCCCCCCCCceeec-CCEEEcCCCCCEEcCCCcc
Confidence 35999999999999999999999999999997 4 89999999999999999999 776 47999999999999 6999
Q ss_pred cccCCCCCCCCCCCCCccccccceeeEEEEcCeEEEccCCC
Q 009277 164 CKFIPQAPPDGPPVHTFEKACAAVYPSTVQHDIVWFWPNIA 204 (538)
Q Consensus 164 c~~iP~~~~~~~~~~~~~~~~l~~~pv~~~~G~IwV~~~~~ 204 (538)
|+..|+. .+|++|||++++|.|||+++..
T Consensus 86 ~~~~P~~------------~~L~~~~v~v~~g~V~v~~~~~ 114 (121)
T 3gce_A 86 PTALPCV------------LPVRAYDVVVDGTEILVAPKEA 114 (121)
T ss_dssp EEETTCC------------SCCCBCCEEEETTEEEECCC--
T ss_pred EeCCCCc------------CCcceEEEEEECCEEEEEECcc
Confidence 9998853 3599999999999999998653
No 23
>3c0d_A Putative nitrite reductase NADPH (small subunit) oxidoreductase protein; NESG, VPR162, Q87HB1, XRAY, structure; 2.40A {Vibrio parahaemolyticus rimd 2210633} SCOP: b.33.1.3
Probab=99.92 E-value=3.2e-25 Score=196.33 Aligned_cols=104 Identities=18% Similarity=0.135 Sum_probs=93.9
Q ss_pred CCeEEeeecCCCCCCCcEEEEECCEEEEEEEeCCCCeEEEEecCCCCCCC-CCCCCcccCC---CeEEeccCCcEEeC-C
Q 009277 87 SQWYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLA-PLSEGRIDQW---GRLQCVYHGWCFSG-S 161 (538)
Q Consensus 87 ~~W~~v~~~~dL~~g~~~~~~l~g~~lvv~r~~~~G~~~a~~d~CpHRga-~Ls~G~v~~~---~~l~CpYHGW~Fd~-~ 161 (538)
..|++|+.++||++|+++.+++.|++|+|||+.+ |+++|++|+||||++ +|++|.++++ +.|+||||||+||. +
T Consensus 4 ~~w~~v~~~~el~~g~~~~~~~~g~~v~v~r~~~-G~~~A~~n~CpH~g~~~L~~G~~~~~~g~~~i~CP~Hg~~Fdl~t 82 (119)
T 3c0d_A 4 LTKVKLCQLDDLMPFIGATVLIEGERVALFYIPD-SGVYAVQDWDPIGKAYVMSRGIVGDINGEMCVASPLYKQHFSLKS 82 (119)
T ss_dssp CCEEEEEEGGGSCBTCCEEEEETTEEEEEEEETT-TEEEEEESEETTTTEECGGGSEEEESSSSEEEECTTTCCEEETTT
T ss_pred CccEEEEEHHHCCCCCeEEEEECCeEEEEEEecC-CeEEEEeCCCCCCCCccCCCeEEcCCCCCeEEECCCCCCEEECCC
Confidence 4699999999999999999999999999999876 899999999999999 8999998632 28999999999996 9
Q ss_pred CCcccCCCCCCCCCCCCCccccccceeeEEEEcCeEEEccCCC
Q 009277 162 GDCKFIPQAPPDGPPVHTFEKACAAVYPSTVQHDIVWFWPNIA 204 (538)
Q Consensus 162 G~c~~iP~~~~~~~~~~~~~~~~l~~~pv~~~~G~IwV~~~~~ 204 (538)
|+|+.+|. .+|++|||++++|.|||++++.
T Consensus 83 G~~~~~P~-------------~~l~~~~v~v~~g~V~v~~~~~ 112 (119)
T 3c0d_A 83 GQCLEDEA-------------HCLKTWRVTVDDNQVCYLAKEL 112 (119)
T ss_dssp CBBSSCTT-------------CBCCEECEEESSSEEEEECCCC
T ss_pred CcCCCCCC-------------ceeeEEEEEEECCEEEEEeCCc
Confidence 99999874 2589999999999999998753
No 24
>4aiv_A Probable nitrite reductase [NAD(P)H] small subuni; oxidoreductase, nitrite metabolism; 2.00A {Mycobacterium tuberculosis}
Probab=99.92 E-value=2.2e-25 Score=197.34 Aligned_cols=102 Identities=16% Similarity=0.127 Sum_probs=88.4
Q ss_pred CCeEEeeecCCCCCCCcEEEEEC-CEEEEEEEeCCCCeEEEEecCCCCCCCCCCCCcccCC----CeEEeccCCcEEe-C
Q 009277 87 SQWYPLMPVCDLDKRVPHAKKVL-GLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQW----GRLQCVYHGWCFS-G 160 (538)
Q Consensus 87 ~~W~~v~~~~dL~~g~~~~~~l~-g~~lvv~r~~~~G~~~a~~d~CpHRga~Ls~G~v~~~----~~l~CpYHGW~Fd-~ 160 (538)
++|++||.++||++|+.+.+.+. |++|+|||+++ |+++|++|+||||+++|+.|.+.++ +.|+||||||+|| .
T Consensus 8 ~~W~~Vc~~~dL~~g~~~~~~~~~G~~v~l~r~~d-G~v~A~~n~CpH~ga~L~~~~~~~~~~~~~~i~CP~Hg~~Fdl~ 86 (119)
T 4aiv_A 8 QVWTTACAYDHLIPGRGVGVLLDDGSQVALFRLDD-GSVHAVGNVDPFSGAAVMSRGIVGDRGGRAMVQSPILKQAFALD 86 (119)
T ss_dssp EEEEEEEEGGGSCTTCCEEEECTTSCEEEEEECTT-SCEEEEESBCTTTCCBCGGGSEEEEETTEEEEECTTTCCEEETT
T ss_pred cceeEeeEHHHcCCCCceEEEEcCCcEEEEEEcCC-CeEEEEECCCCCCCCccccCceeccccCCCEEECCCCCCEEeCC
Confidence 46999999999999999999885 79999999876 8999999999999999987765322 3599999999999 6
Q ss_pred CCCcccCCCCCCCCCCCCCccccccceeeEEEE-cCeEEEccC
Q 009277 161 SGDCKFIPQAPPDGPPVHTFEKACAAVYPSTVQ-HDIVWFWPN 202 (538)
Q Consensus 161 ~G~c~~iP~~~~~~~~~~~~~~~~l~~~pv~~~-~G~IwV~~~ 202 (538)
+|+|+..|. .++++|||+++ +|.|||++.
T Consensus 87 tG~~~~~p~-------------~~l~~ypv~ve~dG~V~V~~~ 116 (119)
T 4aiv_A 87 DGSCLDDPR-------------VSVPVYPARVTPEGRIQVARV 116 (119)
T ss_dssp TCBBSSCTT-------------CBCCEECEEECTTSEEEEEEE
T ss_pred CCcCcCCCC-------------CccceEEEEEEeCCEEEEecC
Confidence 999998774 25899999975 799999864
No 25
>3d89_A Rieske domain-containing protein; CAsp target, rieske ferredoxin, [2Fe-2S] cluster, protein ST initiative, PSI; 2.07A {Mus musculus}
Probab=99.92 E-value=1.4e-25 Score=208.02 Aligned_cols=118 Identities=18% Similarity=0.274 Sum_probs=96.3
Q ss_pred ccCCeEEeeecCCCCCCCcEEEEECCEEEEEEEeCCCCeEEEEecCCCCCCCCCCCCcccC---CCeEEeccCCcEEeC-
Q 009277 85 WFSQWYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQ---WGRLQCVYHGWCFSG- 160 (538)
Q Consensus 85 ~~~~W~~v~~~~dL~~g~~~~~~l~g~~lvv~r~~~~G~~~a~~d~CpHRga~Ls~G~v~~---~~~l~CpYHGW~Fd~- 160 (538)
..+.|++|+.++||++|+++.++++|++|+|+|. + |+++||+|+|||||++|+.|.+++ .+.|+||||||+||.
T Consensus 13 ~~~~W~~v~~~~el~~g~~~~~~~~g~~i~v~r~-~-G~v~A~~n~CpH~g~~L~~G~~~~~~g~~~i~CP~Hgw~Fdl~ 90 (157)
T 3d89_A 13 KKYTSVCVGREEDIRKSERMTAVVHDREVVIFYH-K-GEYHAMDIRCYHSGGPLHLGEIEDFNGQSCIVCPWHKYKITLA 90 (157)
T ss_dssp -CCSCEEEEEHHHHHHHSEEEEEETTEEEEEEEE-T-TEEEEEESBCTTTCCBGGGSEEEEETTEEEEECTTTCCEEETT
T ss_pred CCCceEEEEEHHHCCCCCeEEEEECCEEEEEEEE-C-CEEEEEeCCCCCCCCCCcCCEecCcCCCCEEECCCCCCEEecC
Confidence 3578999999999988899999999999999995 4 899999999999999999999863 157999999999997
Q ss_pred CCCccc--C-CCCCCCCCCCCCccccccceeeEEEEcCeEEEccCCCC
Q 009277 161 SGDCKF--I-PQAPPDGPPVHTFEKACAAVYPSTVQHDIVWFWPNIAP 205 (538)
Q Consensus 161 ~G~c~~--i-P~~~~~~~~~~~~~~~~l~~~pv~~~~G~IwV~~~~~~ 205 (538)
+|+|+. | |...... +.++++..+|++|||++++|+|||++++++
T Consensus 91 tG~~~~~~i~P~~~~~~-~~~~~~~~~L~~~~v~v~~G~V~V~~~~~~ 137 (157)
T 3d89_A 91 TGEGLYQSINPKDPSAK-PKWCSKGVKQRIHTVKVDNGNIYVTLSKEP 137 (157)
T ss_dssp TCEEEEEECCCC------CEEEEEEECSCEEEEEEETTEEEEECCCCS
T ss_pred CcCEEEeccCCCccccc-cccccccCcceEEEEEEECCEEEEEeCCCC
Confidence 999996 4 6432110 001234568999999999999999998653
No 26
>1rie_A Rieske iron-sulfur protein; oxidoreductase, cytochrome BC1 complex, histidine ligands, rieske iron-sulfur cluster, electron transport; 1.50A {Bos taurus} SCOP: b.33.1.1
Probab=99.81 E-value=5.4e-20 Score=164.97 Aligned_cols=97 Identities=21% Similarity=0.245 Sum_probs=86.0
Q ss_pred CeEEeeecCCCCCCCcEEEEECCEEEEEEEeC--------------------------CCCeEEEEecCCCCCCCCCCCC
Q 009277 88 QWYPLMPVCDLDKRVPHAKKVLGLDVVVWWDR--------------------------NENEWRVFADACPHRLAPLSEG 141 (538)
Q Consensus 88 ~W~~v~~~~dL~~g~~~~~~l~g~~lvv~r~~--------------------------~~G~~~a~~d~CpHRga~Ls~G 141 (538)
.|..+ .++||++|+.+.+.+.|++++|+|.. + |+++||.|+|||+|++|+.|
T Consensus 5 ~~~~v-~~s~l~~G~~~~v~~~g~pv~v~r~~~~~~~~~~~~~~~~l~dp~~~~~r~~~-g~~~a~~~~C~H~g~~l~~g 82 (129)
T 1rie_A 5 SKIEI-KLSDIPEGKNMAFKWRGKPLFVRHRTKKEIDQEAAVEVSQLRDPQHDLERVKK-PEWVILIGVCTHLGCVPIAN 82 (129)
T ss_dssp SSEEE-EGGGSCTTCEEEEEETTEEEEEEECCHHHHHHHHTCCGGGCSSCCCGGGTCSS-TTEEEEECCCTTTSCCCEET
T ss_pred CceEe-eHHHCCCCCEEEEEECCeEEEEEECCHHHHhhhhccccceecCcccccccccC-CeEEEEECccCCCCeecccc
Confidence 46667 88999999999999999999999853 4 89999999999999999999
Q ss_pred cccCCCeEEeccCCcEEeCCCCcccCCCCCCCCCCCCCccccccceeeEEE-EcCeEEE
Q 009277 142 RIDQWGRLQCVYHGWCFSGSGDCKFIPQAPPDGPPVHTFEKACAAVYPSTV-QHDIVWF 199 (538)
Q Consensus 142 ~v~~~~~l~CpYHGW~Fd~~G~c~~iP~~~~~~~~~~~~~~~~l~~~pv~~-~~G~IwV 199 (538)
..++ +.|+||||||+||.+|+|+..|.. ..|+.||+++ .+|.|||
T Consensus 83 ~~~~-~~i~CP~Hg~~fd~~G~~~~~P~~------------~~l~~~~v~v~~~~~v~v 128 (129)
T 1rie_A 83 AGDF-GGYYCPCHGSHYDASGRIRKGPAP------------LNLEVPSYEFTSDDMVIV 128 (129)
T ss_dssp CTTT-EEEEETTTTEEEETTCCEEESSCC------------SCCCCCCEEESSSSEEEE
T ss_pred cCCC-CEEEcCCCCCEEcCCCCEeeCCCC------------CCCCceeEEEEeCCEEEE
Confidence 8763 689999999999999999998853 2489999999 8999987
No 27
>1rfs_A Rieske protein; iron-sulfur protein, electron transport; 1.83A {Spinacia oleracea} SCOP: b.33.1.1 PDB: 1q90_C*
Probab=99.81 E-value=1.9e-20 Score=170.08 Aligned_cols=101 Identities=13% Similarity=0.071 Sum_probs=85.8
Q ss_pred CCeEEeee-cCCCCCCCcEEEE-ECCEEEEEEEeCCCCeE--EEEecCCCCCCCCCCCCcccCCCeEEeccCCcEEeCCC
Q 009277 87 SQWYPLMP-VCDLDKRVPHAKK-VLGLDVVVWWDRNENEW--RVFADACPHRLAPLSEGRIDQWGRLQCVYHGWCFSGSG 162 (538)
Q Consensus 87 ~~W~~v~~-~~dL~~g~~~~~~-l~g~~lvv~r~~~~G~~--~a~~d~CpHRga~Ls~G~v~~~~~l~CpYHGW~Fd~~G 162 (538)
..|+.++. ++||+++..+.+. +.|++++++|+.+ |++ +|++|+|||||++|+.|.. ++.|+||||||+||.+|
T Consensus 20 g~~i~v~~~~~dlp~g~~~~~~~~~g~~~ilv~~~~-G~i~~~A~~n~CpH~g~~L~~g~~--~~~i~CP~Hg~~Fd~tG 96 (139)
T 1rfs_A 20 GNDVIAAEWLKTHAPGDRTLTQGLKGDPTYLVVESD-KTLATFGINAVCTHLGCVVPFNAA--ENKFICPCHGSQYNNQG 96 (139)
T ss_dssp SCBCBHHHHHHHSCTTCEEEEECGGGCEEEEEBCTT-SSBCSEEEECBCTTTCCBCCEETT--TTEEECTTTCCEEETTC
T ss_pred CCEEEeehhHhhCCCCccEEEEecCCCeEEEEEeCC-CcEEEEEEeCcCCCCCCCCccCCC--CCEEEcCCCCCEECCCC
Confidence 45667777 8999987776665 5788888888776 899 9999999999999998873 47899999999999999
Q ss_pred CcccCCCCCCCCCCCCCccccccceeeEEEEcCeEEEccC
Q 009277 163 DCKFIPQAPPDGPPVHTFEKACAAVYPSTVQHDIVWFWPN 202 (538)
Q Consensus 163 ~c~~iP~~~~~~~~~~~~~~~~l~~~pv~~~~G~IwV~~~ 202 (538)
+|+..|.. .+|++||+++++|.|||.+.
T Consensus 97 ~~~~~P~~------------~~L~~~~v~v~~g~V~V~~~ 124 (139)
T 1rfs_A 97 RVVRGPAP------------LSLALAHCDVDDGKVVFVPW 124 (139)
T ss_dssp CEEESSCC------------SCCCEEEEEEETTEEEEEEC
T ss_pred CCccCCCC------------CCCCEEEEEEECCEEEEEeC
Confidence 99998842 35899999999999999864
No 28
>1g8k_B Arsenite oxidase; molybdopterin, [3Fe-4S] cluster, [2Fe-2S] rieske, oxidoreductase; HET: MGD; 1.64A {Alcaligenes faecalis} SCOP: b.33.1.1 PDB: 1g8j_B*
Probab=99.79 E-value=3.2e-19 Score=160.79 Aligned_cols=98 Identities=13% Similarity=0.014 Sum_probs=85.2
Q ss_pred CeEEeeecCCCCCCCcEEEEEC--CEEEEEEEeC---------CCCeEEEEecCCCCCCCCCCCCcccCCCeEEeccCCc
Q 009277 88 QWYPLMPVCDLDKRVPHAKKVL--GLDVVVWWDR---------NENEWRVFADACPHRLAPLSEGRIDQWGRLQCVYHGW 156 (538)
Q Consensus 88 ~W~~v~~~~dL~~g~~~~~~l~--g~~lvv~r~~---------~~G~~~a~~d~CpHRga~Ls~G~v~~~~~l~CpYHGW 156 (538)
-|+.|+.++||++|+++.+++. |++++|+|.. + |+++||.|+|||+|++|+.+ .+ ++.|+||||||
T Consensus 7 p~~~v~~~~dl~~g~~~~~~~~~~g~~v~v~r~~~~~~~~~~~~-g~~~A~~n~CpH~g~~L~~~-~~-~~~i~CP~Hg~ 83 (133)
T 1g8k_B 7 PATAVSVAKNLAANEPVSFTYPDTSSPCVAVKLGAPVPGGVGPD-DDIVAYSVLCTHMGCPTSYD-SS-SKTFSCPCHFT 83 (133)
T ss_dssp CCEEEEEGGGCCBTCCEEEECSSTTSEEEEEECSSCCTTCBTTT-TCEEEEECBCTTTCCBCEEE-TT-TTEEECTTTCC
T ss_pred CceeEEEHHHCCCCCeEEEEecCCCceEEEEEccccccccccCC-CEEEEEeCcCCCCCCCCCcc-cC-CCEEECCCCCC
Confidence 3889999999999999999985 8999999974 5 89999999999999999974 33 46899999999
Q ss_pred EEeC--CCCcccCCCCCCCCCCCCCccccccceeeEEEE--cCeEEEc
Q 009277 157 CFSG--SGDCKFIPQAPPDGPPVHTFEKACAAVYPSTVQ--HDIVWFW 200 (538)
Q Consensus 157 ~Fd~--~G~c~~iP~~~~~~~~~~~~~~~~l~~~pv~~~--~G~IwV~ 200 (538)
+||. +|+|+..|.. ..|+.|++++. +|.|||-
T Consensus 84 ~Fd~~~~G~~~~gP~~------------~~L~~~~v~v~~~g~~V~v~ 119 (133)
T 1g8k_B 84 EFDAEKAGQMICGEAT------------ADLPRVLLRYDAASDALTAV 119 (133)
T ss_dssp EEEGGGTTEEEESSCS------------SCCCEEEEEEETTTTEEEEE
T ss_pred EECCCCCCCEEcCCCC------------CCCCEEEEEEECCCCEEEEE
Confidence 9996 8999998842 24899999999 6789884
No 29
>3azc_A Cytochrome B6-F complex iron-sulfur subunit; rieske, thermosynechococcus elongatu photosynthesis, electron transport; 2.00A {Thermosynechococcus elongatus}
Probab=99.64 E-value=2.1e-20 Score=168.06 Aligned_cols=97 Identities=15% Similarity=0.129 Sum_probs=79.4
Q ss_pred ecCCCCCCCcEEEE-ECCEEEEEEEeCCCCe--EEEEecCCCCCCCCCCCCcccCCCeEEeccCCcEEeCCCCcccCCCC
Q 009277 94 PVCDLDKRVPHAKK-VLGLDVVVWWDRNENE--WRVFADACPHRLAPLSEGRIDQWGRLQCVYHGWCFSGSGDCKFIPQA 170 (538)
Q Consensus 94 ~~~dL~~g~~~~~~-l~g~~lvv~r~~~~G~--~~a~~d~CpHRga~Ls~G~v~~~~~l~CpYHGW~Fd~~G~c~~iP~~ 170 (538)
..+|+++|+...++ +.|.+++++|+.+ |+ ++||+|+||||+++|+.|. + ++.|+||||||+||.+|+|+.+|..
T Consensus 22 ~~~~l~~g~~~~v~~l~g~~~vlv~~~~-G~~~v~A~~n~CpH~g~~L~~g~-~-~~~i~CP~Hg~~Fd~tG~~~~~P~~ 98 (133)
T 3azc_A 22 YLAKHLPGDRSLAQGIKGDPTYVIVTED-HQIANYGLNAVCTHLGCVVPWNV-S-ENKFICPCHGSQYDSTGKVVRGPAP 98 (133)
Confidence 45678777666665 4566666666655 78 9999999999999999987 3 4689999999999999999998842
Q ss_pred CCCCCCCCCccccccceeeEEE-EcCeEEEccCCCC
Q 009277 171 PPDGPPVHTFEKACAAVYPSTV-QHDIVWFWPNIAP 205 (538)
Q Consensus 171 ~~~~~~~~~~~~~~l~~~pv~~-~~G~IwV~~~~~~ 205 (538)
.+|++|||++ ++|.|||.++.+.
T Consensus 99 ------------~~L~~ypv~v~~~g~V~V~~~~e~ 122 (133)
T 3azc_A 99 ------------LSLALVKATVTEDDKLVFTPWTEI 122 (133)
Confidence 2599999999 9999999987543
No 30
>4aay_B AROB; oxidoreductase, rieske, iron sulfur, molybdopterin; HET: MGD; 2.70A {Rhizobium species}
Probab=99.75 E-value=1.7e-18 Score=162.81 Aligned_cols=97 Identities=19% Similarity=0.164 Sum_probs=83.6
Q ss_pred eEEeeecCCCCCCCcEEEEECC--EEEEEEEe---------CCCCeEEEEecCCCCCCCCCCCCcccCCCeEEeccCCcE
Q 009277 89 WYPLMPVCDLDKRVPHAKKVLG--LDVVVWWD---------RNENEWRVFADACPHRLAPLSEGRIDQWGRLQCVYHGWC 157 (538)
Q Consensus 89 W~~v~~~~dL~~g~~~~~~l~g--~~lvv~r~---------~~~G~~~a~~d~CpHRga~Ls~G~v~~~~~l~CpYHGW~ 157 (538)
+..|+.++||++|+++.+++.| ++++|+|. .+ |+++||+|+|||+|++|+.| .+ ++.|+||||||+
T Consensus 51 ~~~v~~~~dL~~g~~~~v~~~~~~~pv~v~R~g~~~~~~r~~~-G~v~A~~n~CpH~G~~L~~g-~~-~~~i~CP~Hg~~ 127 (175)
T 4aay_B 51 ANRLANISELTLNEPLDVAYPDEDAAGVLLKLGTRVEGGVGPD-GDIVGFSTICPHKGFPLSYS-AD-NKTFNCPGHFSV 127 (175)
T ss_dssp CEEEEEGGGCBBTBCEEEESSSTTSEEEEEECSSCCTTCBTTT-TCEEEEECBCTTTCCBCEEE-TT-TTEEECTTTCCE
T ss_pred cceEEEHHHCCCCCEEEEEECCCCCEEEEEEcccccccccCCC-CEEEEEeCCCCCCCCCCccC-CC-CCEEEcCCCCCE
Confidence 3469999999999999999975 58999997 35 89999999999999999998 44 479999999999
Q ss_pred EeC--CCCcccCCCCCCCCCCCCCccccccceeeEEE-EcCeEEEc
Q 009277 158 FSG--SGDCKFIPQAPPDGPPVHTFEKACAAVYPSTV-QHDIVWFW 200 (538)
Q Consensus 158 Fd~--~G~c~~iP~~~~~~~~~~~~~~~~l~~~pv~~-~~G~IwV~ 200 (538)
||. +|+|+..|.. ..|+.||+++ .+|.||+-
T Consensus 128 Fd~~~tG~~~~gPa~------------~~L~~y~v~vd~dG~V~av 161 (175)
T 4aay_B 128 FDPEKGGQQVWGQAT------------QNLPQYVLRVADNGDIFAE 161 (175)
T ss_dssp EEGGGTTEEEECSCS------------SCCCBEEEEECTTSEEEEE
T ss_pred ECCCCCceEecCCCC------------CCcCEEEEEEEcCCEEEEE
Confidence 996 5999998852 2489999999 69998854
No 31
>1pp9_E Ubiquinol-cytochrome C reductase iron-sulfur SUBU mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: b.33.1.1 f.23.12.1 PDB: 1bgy_E* 1be3_E* 1l0n_E* 1ntk_E* 1ntm_E* 1ntz_E* 1nu1_E* 1l0l_E* 1ppj_E* 1qcr_E* 1sqb_E* 1sqp_E* 1sqq_E* 1sqv_E* 1sqx_E* 2a06_E* 2fyu_E* 2ybb_E* 1bcc_E* 2bcc_E* ...
Probab=99.67 E-value=1.2e-16 Score=152.91 Aligned_cols=95 Identities=21% Similarity=0.260 Sum_probs=83.1
Q ss_pred eeecCCCCCCCcEEEEECCEEEEEEEeC-------------------------CCCeEEEEecCCCCCCCCCCCCcccCC
Q 009277 92 LMPVCDLDKRVPHAKKVLGLDVVVWWDR-------------------------NENEWRVFADACPHRLAPLSEGRIDQW 146 (538)
Q Consensus 92 v~~~~dL~~g~~~~~~l~g~~lvv~r~~-------------------------~~G~~~a~~d~CpHRga~Ls~G~v~~~ 146 (538)
.+.++||++|+.+.+++.|++++|+|.. .+|+|+|+.|+|||+|++|+.|..+.
T Consensus 75 ~v~ls~l~~G~~~~v~~~G~pV~V~r~t~~~i~~~~~~~~~~l~dp~~~~~r~~~ge~~a~~~~CtH~G~~l~~~~~~~- 153 (196)
T 1pp9_E 75 EIKLSDIPEGKNMAFKWRGKPLFVRHRTKKEIDQEAAVEVSQLRDPQHDLERVKKPEWVILIGVCTHLGCVPIANAGDF- 153 (196)
T ss_dssp EEEGGGSCTTCEEEEEETTEEEEEEECCHHHHHHHHHSCTTTCSSCCCGGGTCSSTTEEEEECCCTTTSCCCEETCSTT-
T ss_pred EEEHHHCCCCCeEEEEECCEEEEEEECCHHHHhhhhccccccccCcccccccccCCeEEEEECccCCCCeeccccCCCC-
Confidence 4688999999999999999999999852 13899999999999999999987753
Q ss_pred CeEEeccCCcEEeCCCCcccCCCCCCCCCCCCCccccccceeeEEE-EcCeEEE
Q 009277 147 GRLQCVYHGWCFSGSGDCKFIPQAPPDGPPVHTFEKACAAVYPSTV-QHDIVWF 199 (538)
Q Consensus 147 ~~l~CpYHGW~Fd~~G~c~~iP~~~~~~~~~~~~~~~~l~~~pv~~-~~G~IwV 199 (538)
+.|.||||||+||.+|+++..|.. ..|..||+++ .+|.|+|
T Consensus 154 ~~~~CP~HGs~FD~~G~v~~gPa~------------~~L~~~p~~v~~d~~I~v 195 (196)
T 1pp9_E 154 GGYYCPCHGSHYDASGRIRKGPAP------------LNLEVPSYEFTSDDMVIV 195 (196)
T ss_dssp SSEEETTTTEEECTTCCEEESSCC------------SCCCCCCEEEETTTEEEE
T ss_pred CEEEeCCCCCEECCCCCCccCCCC------------CCCcceeEEEEECCEEEE
Confidence 689999999999999999998853 2488999998 7898887
No 32
>2qjy_C Ubiquinol-cytochrome C reductase iron-sulfur SUBU; cytochrome B, 8 TM helixces cytochrome C1, 1 C-TERM TM helix 1 N-TERM TM helix; HET: BGL HEM SMA LOP UQ2; 2.40A {Rhodobacter sphaeroides} PDB: 2fyn_C* 2qjk_C* 2qjp_C* 1zrt_E* 2yiu_C*
Probab=99.67 E-value=1.8e-16 Score=150.71 Aligned_cols=98 Identities=17% Similarity=0.267 Sum_probs=80.9
Q ss_pred eEEeeecCCCCCCCcEEEEECCEEEEEEEeC---------------------------------------CCCeEEEEec
Q 009277 89 WYPLMPVCDLDKRVPHAKKVLGLDVVVWWDR---------------------------------------NENEWRVFAD 129 (538)
Q Consensus 89 W~~v~~~~dL~~g~~~~~~l~g~~lvv~r~~---------------------------------------~~G~~~a~~d 129 (538)
|..+ .++||++|+.+.++..|++|+|+|.. .+|+++|+.|
T Consensus 49 ~v~v-~ls~l~~G~~~~v~~~g~pv~i~rrt~~~i~~~~~~~~~~l~dp~~~~~~~p~~~~~~~~~r~~~~~g~~~a~~~ 127 (187)
T 2qjy_C 49 SIFV-DVSSVEPGVQLTVKFLGKPIFIRRRTEADIELGRSVQLGQLVDTNARNANIDAGAEATDQNRTLDEAGEWLVMWG 127 (187)
T ss_dssp CEEE-ECTTCCTTEEEEEEETTEEEEEEECCHHHHHHHHTCCGGGCSCCBCCBTTSCTTCBCCGGGGSSSTTCCEEEEEC
T ss_pred cEEE-EHHHCCCCCeEEEEECCEEEEEEECCHHHhhhhhccchhhccCcccccccccccccccccccccCCCCeEEEEeC
Confidence 3444 78999999999999999999999831 1489999999
Q ss_pred CCCCCCCCCCCCcccCCCeEEeccCCcEEeCCCCcccCCCCCCCCCCCCCccccccceeeEEEE-cCeEEE
Q 009277 130 ACPHRLAPLSEGRIDQWGRLQCVYHGWCFSGSGDCKFIPQAPPDGPPVHTFEKACAAVYPSTVQ-HDIVWF 199 (538)
Q Consensus 130 ~CpHRga~Ls~G~v~~~~~l~CpYHGW~Fd~~G~c~~iP~~~~~~~~~~~~~~~~l~~~pv~~~-~G~IwV 199 (538)
+|||+|++|+.|.-+..+.|.||||||+||.+|+|+..|.. ..|..||+++. +|.|+|
T Consensus 128 ~C~H~G~~l~~~~~g~~~~~~CP~Hg~~Fd~~G~~~~gPa~------------~~L~~~~~~v~~d~~i~i 186 (187)
T 2qjy_C 128 VCTHLGCSPIGGVSGDFGGWFCPCHGSHYDSAGRIRKGPAP------------ENLPIPLAKFIDETTIQL 186 (187)
T ss_dssp CCTTTSCCCEEEEETTTTEEEETTTTEEECTTSCEEESSCC------------SCCCBCSEEEEETTEEEE
T ss_pred ccCCCCeECccCcCCCcCEEEeCCCCCEECCCCeEeCCCCC------------CCCceEEEEEEeCCEEEE
Confidence 99999999998422222689999999999999999998752 24899999986 688887
No 33
>2nwf_A Ubiquinol-cytochrome C reductase iron-sulfur SUBU; rieske [2Fe-2S] ISP, oxidoreductase; HET: GOL; 1.10A {Rhodobacter sphaeroides} PDB: 2nuk_A 2nve_A 2num_A 2nvg_A 2nvf_A
Probab=99.67 E-value=1.6e-16 Score=144.30 Aligned_cols=93 Identities=18% Similarity=0.274 Sum_probs=80.3
Q ss_pred ecCCCCCCCcEEEEECCEEEEEEEeC---------------------------------------CCCeEEEEecCCCCC
Q 009277 94 PVCDLDKRVPHAKKVLGLDVVVWWDR---------------------------------------NENEWRVFADACPHR 134 (538)
Q Consensus 94 ~~~dL~~g~~~~~~l~g~~lvv~r~~---------------------------------------~~G~~~a~~d~CpHR 134 (538)
.+++|++|+.++++..|+++.|.|.. .+|+++|+.|+|||+
T Consensus 7 d~s~l~~g~~~~v~wrgkPv~i~~rt~~~~~~~~~~~~~~l~Dp~~~~~~~p~~~y~~~~~R~~~~~g~~~a~~~~C~H~ 86 (141)
T 2nwf_A 7 DVSSVEPGVQLTVKFLGKPIFIRRRTEADIELGRSVQLGQLVDTNARNANIDAGAEATDQNRTLDEAGEWLVMWGVCTHL 86 (141)
T ss_dssp ECTTCCTTEEEEEEETTEEEEEEECCHHHHHHHHTCCGGGCSCCBCCBTTSCTTCBCCGGGGSSSTTSCEEEEECCCTTT
T ss_pred ecccCCCCCEEEEEECCEEEEEEECCHHHHhhhhcccccccCCcccccccCCccccccchhccccCCCcEEEEeCcCCCC
Confidence 57899999999999999999998851 148999999999999
Q ss_pred CCCCCC-CcccCCCeEEeccCCcEEeCCCCcccCCCCCCCCCCCCCccccccceeeEEE-EcCeEEE
Q 009277 135 LAPLSE-GRIDQWGRLQCVYHGWCFSGSGDCKFIPQAPPDGPPVHTFEKACAAVYPSTV-QHDIVWF 199 (538)
Q Consensus 135 ga~Ls~-G~v~~~~~l~CpYHGW~Fd~~G~c~~iP~~~~~~~~~~~~~~~~l~~~pv~~-~~G~IwV 199 (538)
|++|+. +..+ .+.|.||||||+||.+|+|+..|+. ..|..||+++ .+|.|+|
T Consensus 87 G~~l~~~~~~~-~~~~~CP~Hgs~Fd~~G~~~~gPa~------------~~L~~~pv~v~~d~~i~v 140 (141)
T 2nwf_A 87 GCVPIGGVSGD-FGGWFCPCHGSHWDSAGRIRKGPAP------------ENLPIPLAKFIDETTIQL 140 (141)
T ss_dssp CCCCEEEEETT-TTEEEETTTTEEECTTSCEEESSCC------------SCCCBCSEEESSSSEEEE
T ss_pred CeEccccCccC-CCEEEcCCCCCEECCCCCCccCCCC------------CCCCceeEEEEECCEEEE
Confidence 999998 6544 3689999999999999999998853 2488999999 7999887
No 34
>3cx5_E Cytochrome B-C1 complex subunit rieske, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: b.33.1.1 f.23.12.1 PDB: 1kb9_E* 1kyo_E* 1p84_E* 2ibz_E* 1ezv_E* 3cxh_E*
Probab=99.67 E-value=2.2e-16 Score=149.83 Aligned_cols=97 Identities=18% Similarity=0.229 Sum_probs=82.1
Q ss_pred CeEEeeecCCCCCCCcEEEEECCEEEEEEEeCC-------------------------CCeEEEEecCCCCCCCC-CCCC
Q 009277 88 QWYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRN-------------------------ENEWRVFADACPHRLAP-LSEG 141 (538)
Q Consensus 88 ~W~~v~~~~dL~~g~~~~~~l~g~~lvv~r~~~-------------------------~G~~~a~~d~CpHRga~-Ls~G 141 (538)
.|..| .++||++|+.+.+++.|++++|+|..+ +|+|+|+.|+|||+|+. +..+
T Consensus 62 ~~v~V-~~s~l~~G~~~~v~~~g~pv~v~r~~~~~i~~~~~~~~~~l~dp~~~~~r~~~g~~~a~~~iCtHlGc~p~~~~ 140 (185)
T 3cx5_E 62 AKVEV-NLAAIPLGKNVVVKWQGKPVFIRHRTPHEIQEANSVDMSALKDPQTDADRVKDPQWLIMLGICTHLGCVPIGEA 140 (185)
T ss_dssp CCEEE-EGGGCCTTCEEEEEETTEEEEEEECCHHHHHHHHCSCGGGCSSCCCSTTTCSSTTEEEEECCCTTTSCCCEEEE
T ss_pred CcEEE-EHHHCCCCCeEEEEECCeEEEEEECCHHHhhhhhhcchhhhcCcccccccccCCeEEEEecccCCCCceeccCC
Confidence 58889 699999999999999999999999741 37999999999999995 5554
Q ss_pred cccCCCeEEeccCCcEEeCCCCcccCCCCCCCCCCCCCccccccceeeEEEEcCeEEE
Q 009277 142 RIDQWGRLQCVYHGWCFSGSGDCKFIPQAPPDGPPVHTFEKACAAVYPSTVQHDIVWF 199 (538)
Q Consensus 142 ~v~~~~~l~CpYHGW~Fd~~G~c~~iP~~~~~~~~~~~~~~~~l~~~pv~~~~G~IwV 199 (538)
. + .+.|.||||||+||.+|+|+..|... .|..+|+++.+|.|||
T Consensus 141 ~-~-~~~~~CPcHGs~FD~~G~v~~gPa~~------------~L~v~p~~v~~~~I~v 184 (185)
T 3cx5_E 141 G-D-FGGWFCPCHGSHYDISGRIRKGPAPL------------NLEIPAYEFDGDKVIV 184 (185)
T ss_dssp T-T-TTEEEETTTTEEECTTCCEEESSCCS------------CCCCCCEEEETTEEEE
T ss_pred C-C-CCEEEcCCCCCEECCCCCEecCCCCC------------CcceEEEEEECCEEEE
Confidence 2 2 36899999999999999999988522 3778888889999987
No 35
>1nyk_A Rieske iron-sulfur protein; beta barrel, iron sulfur cluster, electron transport; 1.31A {Thermus thermophilus} SCOP: b.33.1.1 PDB: 3fou_A
Probab=99.66 E-value=1.2e-16 Score=148.84 Aligned_cols=68 Identities=16% Similarity=0.189 Sum_probs=59.8
Q ss_pred EEEEecCCCCCCCCCCCCcccCCCeEEeccCCcEEeC-CCC-cccCCCCCCCCCCCCCccccccceeeEEEEcCeEEEcc
Q 009277 124 WRVFADACPHRLAPLSEGRIDQWGRLQCVYHGWCFSG-SGD-CKFIPQAPPDGPPVHTFEKACAAVYPSTVQHDIVWFWP 201 (538)
Q Consensus 124 ~~a~~d~CpHRga~Ls~G~v~~~~~l~CpYHGW~Fd~-~G~-c~~iP~~~~~~~~~~~~~~~~l~~~pv~~~~G~IwV~~ 201 (538)
++||.|+|||+|++|+.|.+++ +.|.||||||+||. +|. |+..|.. .+|..||+++.+|.|||++
T Consensus 80 v~A~~~~CpH~G~~L~~g~~~~-~~i~CP~Hgs~Fd~~tG~~~~~gPa~------------~~L~~~~v~v~~g~V~v~~ 146 (165)
T 1nyk_A 80 VVAYSAVCTHLGCIVSQWVADE-EAALCPCHGGVYDLRHGAQVIAGPPP------------RPVPQLPVRVEDGVLVAAG 146 (165)
T ss_dssp EEEEECBCTTTCCBCCEEEGGG-TEEECTTTCCEEEGGGTTEEEESSCS------------SCCCEECEEEETTEEEECS
T ss_pred EEEEEeecCCCCeEcccccCCC-CEEECCCCCCEEcCCCCCeeecCCCC------------CCCcEEEEEEECCEEEEEe
Confidence 9999999999999999988864 68999999999996 486 9998742 2589999999999999998
Q ss_pred CCC
Q 009277 202 NIA 204 (538)
Q Consensus 202 ~~~ 204 (538)
+..
T Consensus 147 ~~~ 149 (165)
T 1nyk_A 147 EFL 149 (165)
T ss_dssp SCS
T ss_pred cCc
Confidence 753
No 36
>1vf5_D Rieske iron-sulfur protein; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: b.33.1.1 f.23.12.1 PDB: 2d2c_D* 2e74_D* 2e75_D* 2e76_D* 2zt9_D*
Probab=99.60 E-value=9.6e-17 Score=151.74 Aligned_cols=92 Identities=15% Similarity=0.153 Sum_probs=78.9
Q ss_pred cCCCCCCCcEEEE-ECCEEEEEEEeCCCCeE--EEEecCCCCCCCCCCCCcccCCCeEEeccCCcEEeCCCCcccCCCCC
Q 009277 95 VCDLDKRVPHAKK-VLGLDVVVWWDRNENEW--RVFADACPHRLAPLSEGRIDQWGRLQCVYHGWCFSGSGDCKFIPQAP 171 (538)
Q Consensus 95 ~~dL~~g~~~~~~-l~g~~lvv~r~~~~G~~--~a~~d~CpHRga~Ls~G~v~~~~~l~CpYHGW~Fd~~G~c~~iP~~~ 171 (538)
.+||++|+...+. +.|++++++|+.+ |++ +|+.|+|||+|++|+.|.. ++.|.||||||+||.+|+|+..|..
T Consensus 70 ~~~l~~g~~~~~~~~~g~~~~lv~~~~-g~~~~~a~~~~CtH~G~~l~~~~~--~~~~~CP~Hgs~Fd~~G~~~~gPa~- 145 (179)
T 1vf5_D 70 LESHNAGDRVLVQGLKGDPTYIVVESK-EAIRDYGINAVCTHLGCVVPWNAA--ENKFKCPCHGSQYDETGRVIRGPAP- 145 (179)
T ss_dssp HHCCCTTCCCEESCSSSSCEECCBCTT-CCBCSCCCBCBCTTTSCBCCBCSS--SSSEECTTTCCEECSSSCCCSSSCC-
T ss_pred ccccCCCceEEEeccCCCeEEEEEECC-CcEEEEEEeCccCCCCCCCcccCC--CCEEECCCCCCEECCCCcEecCCCC-
Confidence 4788888877776 6788998888876 787 9999999999999998873 4689999999999999999998842
Q ss_pred CCCCCCCCccccccceeeEEEEcCeEEEcc
Q 009277 172 PDGPPVHTFEKACAAVYPSTVQHDIVWFWP 201 (538)
Q Consensus 172 ~~~~~~~~~~~~~l~~~pv~~~~G~IwV~~ 201 (538)
..|+.||+++.+|.|||.+
T Consensus 146 -----------~~L~~~~v~v~~g~v~v~~ 164 (179)
T 1vf5_D 146 -----------LSLALCHATVQDDNIVLTP 164 (179)
T ss_dssp -----------SCCBCCCCCCSSSSCCCCC
T ss_pred -----------CCCCeEEEEEECCEEEEEe
Confidence 2489999999999999875
No 37
>1jm1_A Rieske iron-sulfur protein SOXF; electron transport, respiratory chain, oxidoreductase; 1.11A {Sulfolobus acidocaldarius} SCOP: b.33.1.1
Probab=99.50 E-value=3.7e-15 Score=143.34 Aligned_cols=86 Identities=15% Similarity=0.127 Sum_probs=70.6
Q ss_pred EEEEECCEEEEEEEeC------------CCCeEEEEecCCCCCCCCCCCCcc----------cCCCeEEeccCCcEEeCC
Q 009277 104 HAKKVLGLDVVVWWDR------------NENEWRVFADACPHRLAPLSEGRI----------DQWGRLQCVYHGWCFSGS 161 (538)
Q Consensus 104 ~~~~l~g~~lvv~r~~------------~~G~~~a~~d~CpHRga~Ls~G~v----------~~~~~l~CpYHGW~Fd~~ 161 (538)
..+++.+.+++++|+. + |+++|+.|+|||+|++|+.|.+ ...+.|.||||||+||.+
T Consensus 56 ~~v~v~~~~i~v~r~~~~~~r~~ggvg~~-g~i~A~~n~CpH~G~~L~~g~~~p~~~~~~~~~~~~~i~CP~Hgs~FDl~ 134 (204)
T 1jm1_A 56 QITEIPNPYYGKYAGPLGQIQTIKGVGPN-GTIFAFSDVCVHLGCQLPAQVIVSSESDPGLYAKGADLHCPCHGSIYALK 134 (204)
T ss_dssp CCCEEECTTTTSSCTTGGGCCEEECBTTT-TCEEEEESBCTTTCCBCCTTEEESSTTSSEEETTTTEEECTTTCCEEEGG
T ss_pred ceEeeCCceEEEEecCccccccccccccC-CEEEEEeCcCCCCCcCccccccccccccccccCCCCEEECCCCCCEEeCC
Confidence 4567788888888764 4 8999999999999999999864 234689999999999976
Q ss_pred --CCcccCCCCCCCCCCCCCccccccceeeEEEE--cCeEEEccC
Q 009277 162 --GDCKFIPQAPPDGPPVHTFEKACAAVYPSTVQ--HDIVWFWPN 202 (538)
Q Consensus 162 --G~c~~iP~~~~~~~~~~~~~~~~l~~~pv~~~--~G~IwV~~~ 202 (538)
|+|+..|+. ..|+.|++.+. +|.|||...
T Consensus 135 tGG~v~~gPa~------------~~L~~~~v~v~~~~g~v~v~g~ 167 (204)
T 1jm1_A 135 DGGVVVSGPAP------------RPLPIVILDYDSSTGDIYAVGT 167 (204)
T ss_dssp GTSEEEESSCC------------SCCCBEEEEECTTTCEEEEEEE
T ss_pred CCCeEecCCCC------------CCCCeEeeEEEecCCEEEEEeC
Confidence 699988742 24889999987 899998754
No 38
>3hug_B Probable conserved membrane protein; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=55.12 E-value=6.3 Score=33.36 Aligned_cols=48 Identities=21% Similarity=0.427 Sum_probs=35.2
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCCCCCCCChhhhHHHHHhhhccChhhHHHHHHHHHHHHHHHH
Q 009277 419 GFRRWLKKYAGGQFNWGGKFNATLPPTPPREQLMDRYWSHVVNCKSCNAAHKSLSALEVTLQV 481 (538)
Q Consensus 419 ~fRrWl~~~~~g~~~w~~~~~~~lp~~~~~e~lldRy~~Ht~~C~sC~~Al~~~~~~~~~~~~ 481 (538)
.++.|+..|+.|. |++ .--.++++|-..|+.|++.++.++.+...+..
T Consensus 26 ~l~eLL~aYalGa----------Ld~-----~e~~~vEaHLa~Cp~CR~ev~eL~~~~a~L~~ 73 (108)
T 3hug_B 26 HYAMWDAAYVLGA----------LSA-----ADRREFEAHLAGCPECRGAVTELCGVPALLSQ 73 (108)
T ss_dssp GGGGGHHHHHHTC----------SCH-----HHHHHHHHHHHTCHHHHHHHHHHTTHHHHHTT
T ss_pred HHHHHHHHHHcCC----------CCH-----HHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhc
Confidence 4566777777653 332 44567899999999999999999987555543
No 39
>3fz4_A Putative arsenate reductase; APC61768, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.38A {Streptococcus mutans UA159} SCOP: c.47.1.0
Probab=44.94 E-value=8.8 Score=32.74 Aligned_cols=18 Identities=28% Similarity=0.623 Sum_probs=15.9
Q ss_pred hhccChhhHHHHHHHHHH
Q 009277 458 HVVNCKSCNAAHKSLSAL 475 (538)
Q Consensus 458 Ht~~C~sC~~Al~~~~~~ 475 (538)
|+..|+.|++|++.++.-
T Consensus 9 ~~~~C~~c~ka~~~L~~~ 26 (120)
T 3fz4_A 9 EYPKCSTCRRAKAELDDL 26 (120)
T ss_dssp ECSSCHHHHHHHHHHHHH
T ss_pred eCCCChHHHHHHHHHHHc
Confidence 678999999999999863
No 40
>3f0i_A Arsenate reductase; structural genomics, IDP01300, vibrio CH center for structural genomics of infectious diseases, CSGI oxidoreductase; HET: MSE; 1.88A {Vibrio cholerae}
Probab=42.88 E-value=10 Score=32.33 Aligned_cols=17 Identities=18% Similarity=0.296 Sum_probs=15.4
Q ss_pred hhccChhhHHHHHHHHH
Q 009277 458 HVVNCKSCNAAHKSLSA 474 (538)
Q Consensus 458 Ht~~C~sC~~Al~~~~~ 474 (538)
|...|+.|++|++.++.
T Consensus 10 ~~p~C~~c~ka~~~L~~ 26 (119)
T 3f0i_A 10 HNPKCSKSRETLALLEN 26 (119)
T ss_dssp CCTTCHHHHHHHHHHHH
T ss_pred ECCCChHHHHHHHHHHH
Confidence 67799999999999986
No 41
>3gkx_A Putative ARSC family related protein; ARSC family protein, structural genomi 2, protein structure initiative; 2.20A {Bacteroides fragilis} SCOP: c.47.1.0
Probab=40.82 E-value=11 Score=32.11 Aligned_cols=17 Identities=29% Similarity=0.550 Sum_probs=15.4
Q ss_pred hhccChhhHHHHHHHHH
Q 009277 458 HVVNCKSCNAAHKSLSA 474 (538)
Q Consensus 458 Ht~~C~sC~~Al~~~~~ 474 (538)
|+..|+.|++|++.++.
T Consensus 10 ~~p~C~~c~ka~~~L~~ 26 (120)
T 3gkx_A 10 QYPACSTCQKAKKWLIE 26 (120)
T ss_dssp ECTTCHHHHHHHHHHHH
T ss_pred ECCCChHHHHHHHHHHH
Confidence 67799999999999986
No 42
>3rdw_A Putative arsenate reductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 2.20A {Yersinia pestis}
Probab=38.14 E-value=12 Score=31.84 Aligned_cols=17 Identities=12% Similarity=0.245 Sum_probs=15.4
Q ss_pred hhccChhhHHHHHHHHH
Q 009277 458 HVVNCKSCNAAHKSLSA 474 (538)
Q Consensus 458 Ht~~C~sC~~Al~~~~~ 474 (538)
|...|+.|++|++.++.
T Consensus 11 ~~p~C~~c~ka~~~L~~ 27 (121)
T 3rdw_A 11 HNPRCSKSRETLALVEQ 27 (121)
T ss_dssp CCTTCHHHHHHHHHHHT
T ss_pred ECCCCHHHHHHHHHHHH
Confidence 67899999999999985
No 43
>2q1z_B Anti-sigma factor CHRR, transcriptional activator; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_B
Probab=35.28 E-value=22 Score=32.80 Aligned_cols=27 Identities=22% Similarity=0.346 Sum_probs=22.7
Q ss_pred hhHHHHHhhhccChhhHHHHHHHHHHH
Q 009277 450 QLMDRYWSHVVNCKSCNAAHKSLSALE 476 (538)
Q Consensus 450 ~lldRy~~Ht~~C~sC~~Al~~~~~~~ 476 (538)
..--...+|-..|+.|++.++.++++.
T Consensus 23 ~~~~~ve~HL~~C~~Cr~~v~~l~~~~ 49 (195)
T 2q1z_B 23 AFSLVVATHLSLCDECRARAGALDAVG 49 (195)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHCHHHHHHHHHHHHHH
Confidence 344578899999999999999999864
No 44
>3l78_A Regulatory protein SPX; transcription, transcriptional factor, disulfide bond, redox-active center, transcription regulati; 1.90A {Streptococcus mutans} SCOP: c.47.1.12
Probab=34.62 E-value=16 Score=30.98 Aligned_cols=17 Identities=29% Similarity=0.491 Sum_probs=15.2
Q ss_pred hhccChhhHHHHHHHHH
Q 009277 458 HVVNCKSCNAAHKSLSA 474 (538)
Q Consensus 458 Ht~~C~sC~~Al~~~~~ 474 (538)
|...|+.|++|.+.++.
T Consensus 6 ~~~~C~~c~ka~~~L~~ 22 (120)
T 3l78_A 6 LSPSCTSCRKARAWLNR 22 (120)
T ss_dssp ECSSCHHHHHHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHH
Confidence 56789999999999986
No 45
>1s3c_A Arsenate reductase; ARSC, arsenite, oxidoreductase; 1.25A {Escherichia coli} PDB: 1sd9_A 1i9d_A 1j9b_A 1sd8_A 1jzw_A* 1sk1_A* 1sjz_A* 1sk0_A* 1sk2_A 1s3d_A
Probab=34.36 E-value=16 Score=32.04 Aligned_cols=17 Identities=6% Similarity=0.063 Sum_probs=15.3
Q ss_pred hhccChhhHHHHHHHHH
Q 009277 458 HVVNCKSCNAAHKSLSA 474 (538)
Q Consensus 458 Ht~~C~sC~~Al~~~~~ 474 (538)
|...|+.|++|++.++.
T Consensus 8 ~~p~C~~crkak~~L~~ 24 (141)
T 1s3c_A 8 HNPASGTSRNTLEMIRN 24 (141)
T ss_dssp CCTTCHHHHHHHHHHHH
T ss_pred ECCCChHHHHHHHHHHH
Confidence 57899999999999986
No 46
>1rw1_A Conserved hypothetical protein YFFB; thioredoxin fold, structure 2 function project, S2F, structu genomics, unknown function; HET: MSE IPA; 1.02A {Pseudomonas aeruginosa} SCOP: c.47.1.12
Probab=33.98 E-value=17 Score=30.45 Aligned_cols=17 Identities=18% Similarity=0.335 Sum_probs=15.2
Q ss_pred hhccChhhHHHHHHHHH
Q 009277 458 HVVNCKSCNAAHKSLSA 474 (538)
Q Consensus 458 Ht~~C~sC~~Al~~~~~ 474 (538)
|+.+|+.|++|.+.++.
T Consensus 6 ~~~~C~~C~kak~~L~~ 22 (114)
T 1rw1_A 6 GIKACDTMKKARTWLDE 22 (114)
T ss_dssp ECSSCHHHHHHHHHHHH
T ss_pred ECCCChHHHHHHHHHHH
Confidence 56799999999999986
No 47
>2kok_A Arsenate reductase; brucellosis, zoonotic, oxidoreductase, S genomics, seattle structural genomics center for infectious ssgcid; NMR {Brucella abortus}
Probab=31.98 E-value=19 Score=30.42 Aligned_cols=18 Identities=22% Similarity=0.305 Sum_probs=15.7
Q ss_pred hhccChhhHHHHHHHHHH
Q 009277 458 HVVNCKSCNAAHKSLSAL 475 (538)
Q Consensus 458 Ht~~C~sC~~Al~~~~~~ 475 (538)
|+..|+.|++|++.++..
T Consensus 11 ~~~~C~~C~ka~~~L~~~ 28 (120)
T 2kok_A 11 GIKNCDTMKKARIWLEDH 28 (120)
T ss_dssp ECSSCHHHHHHHHHHHHH
T ss_pred ECCCChHHHHHHHHHHHc
Confidence 567999999999999864
No 48
>1z3e_A Regulatory protein SPX; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: c.47.1.12 PDB: 3gfk_A 3ihq_A
Probab=22.04 E-value=36 Score=29.14 Aligned_cols=18 Identities=28% Similarity=0.456 Sum_probs=15.5
Q ss_pred hhccChhhHHHHHHHHHH
Q 009277 458 HVVNCKSCNAAHKSLSAL 475 (538)
Q Consensus 458 Ht~~C~sC~~Al~~~~~~ 475 (538)
|...|+.|++|.+.++..
T Consensus 7 ~~~~C~~C~ka~~~L~~~ 24 (132)
T 1z3e_A 7 TSPSCTSCRKARAWLEEH 24 (132)
T ss_dssp ECTTCHHHHHHHHHHHHT
T ss_pred eCCCChHHHHHHHHHHHc
Confidence 567999999999999863
Done!