Query 009278
Match_columns 538
No_of_seqs 944 out of 1663
Neff 11.8
Searched_HMMs 46136
Date Thu Mar 28 22:36:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009278.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009278hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4626 O-linked N-acetylgluco 100.0 5.9E-49 1.3E-53 352.0 29.8 436 4-535 50-494 (966)
2 KOG0548 Molecular co-chaperone 100.0 5.2E-46 1.1E-50 329.3 43.7 499 1-537 1-499 (539)
3 KOG4626 O-linked N-acetylgluco 100.0 3.7E-48 7.9E-53 346.9 29.6 400 2-524 116-523 (966)
4 TIGR00990 3a0801s09 mitochondr 100.0 4.6E-39 9.9E-44 320.5 44.9 429 2-490 127-575 (615)
5 TIGR02917 PEP_TPR_lipo putativ 100.0 2.5E-37 5.4E-42 328.2 46.4 453 4-516 433-896 (899)
6 TIGR02917 PEP_TPR_lipo putativ 100.0 4.1E-36 9E-41 318.9 46.6 455 2-513 397-859 (899)
7 PRK11447 cellulose synthase su 100.0 3.3E-36 7.3E-41 318.8 44.0 428 7-519 274-739 (1157)
8 KOG0547 Translocase of outer m 100.0 5.8E-36 1.3E-40 261.6 34.0 434 2-492 115-572 (606)
9 PRK11447 cellulose synthase su 100.0 2.6E-34 5.7E-39 304.4 47.7 279 3-319 29-338 (1157)
10 TIGR00990 3a0801s09 mitochondr 100.0 1.4E-32 3.1E-37 274.0 45.2 406 3-488 161-599 (615)
11 PRK15174 Vi polysaccharide exp 100.0 6.9E-33 1.5E-37 274.8 41.2 338 4-491 44-386 (656)
12 PRK09782 bacteriophage N4 rece 100.0 7.1E-32 1.5E-36 272.8 40.9 501 3-532 45-712 (987)
13 KOG2002 TPR-containing nuclear 100.0 1E-31 2.2E-36 254.0 35.7 421 19-515 147-704 (1018)
14 KOG2002 TPR-containing nuclear 100.0 1E-31 2.2E-36 254.1 35.5 425 3-508 271-767 (1018)
15 PRK15174 Vi polysaccharide exp 100.0 4E-31 8.6E-36 262.2 37.5 349 12-518 15-379 (656)
16 PRK10049 pgaA outer membrane p 100.0 1.2E-30 2.6E-35 264.6 39.0 389 7-513 20-449 (765)
17 PRK10049 pgaA outer membrane p 100.0 3.1E-30 6.6E-35 261.6 40.5 379 2-494 49-464 (765)
18 KOG0624 dsRNA-activated protei 100.0 4.1E-29 8.9E-34 209.4 33.9 338 3-503 39-387 (504)
19 PRK09782 bacteriophage N4 rece 100.0 1.9E-28 4.2E-33 248.0 42.6 255 242-511 467-731 (987)
20 KOG1126 DNA-binding cell divis 100.0 1.9E-29 4.1E-34 230.2 25.3 304 37-489 318-623 (638)
21 KOG1126 DNA-binding cell divis 100.0 6.6E-29 1.4E-33 226.7 26.4 304 6-458 323-626 (638)
22 KOG0547 Translocase of outer m 100.0 3.2E-28 7E-33 213.4 24.9 400 37-534 116-540 (606)
23 PRK11788 tetratricopeptide rep 100.0 3.9E-27 8.4E-32 223.9 34.5 319 35-531 34-356 (389)
24 KOG1155 Anaphase-promoting com 100.0 1.5E-26 3.2E-31 201.8 33.0 349 5-502 167-552 (559)
25 PRK14574 hmsH outer membrane p 100.0 2E-25 4.3E-30 221.7 44.8 445 2-532 34-522 (822)
26 KOG1155 Anaphase-promoting com 100.0 1.5E-25 3.3E-30 195.5 37.1 393 5-531 81-507 (559)
27 PRK11788 tetratricopeptide rep 100.0 3.7E-26 8.1E-31 217.2 35.6 298 4-485 37-346 (389)
28 KOG2076 RNA polymerase III tra 100.0 1.9E-25 4.1E-30 210.6 36.6 371 3-509 140-544 (895)
29 KOG1173 Anaphase-promoting com 100.0 6E-25 1.3E-29 196.8 31.3 351 4-503 143-535 (611)
30 KOG1173 Anaphase-promoting com 99.9 5.6E-24 1.2E-28 190.6 33.9 419 5-512 52-510 (611)
31 KOG2003 TPR repeat-containing 99.9 1.3E-25 2.8E-30 195.6 21.7 430 7-507 242-710 (840)
32 KOG2076 RNA polymerase III tra 99.9 1.9E-23 4.1E-28 197.3 35.8 324 36-511 139-503 (895)
33 PRK14574 hmsH outer membrane p 99.9 2.7E-22 5.8E-27 199.6 42.4 430 7-494 73-521 (822)
34 KOG0550 Molecular chaperone (D 99.9 2.5E-24 5.5E-29 185.4 19.0 316 2-505 49-368 (486)
35 KOG2003 TPR repeat-containing 99.9 4.3E-23 9.4E-28 180.0 23.5 458 4-513 203-682 (840)
36 KOG0495 HAT repeat protein [RN 99.9 1.3E-21 2.7E-26 178.3 33.4 351 4-508 518-868 (913)
37 KOG4162 Predicted calmodulin-b 99.9 1.9E-21 4.1E-26 180.8 33.6 406 4-521 325-784 (799)
38 TIGR00540 hemY_coli hemY prote 99.9 2.2E-21 4.9E-26 183.1 34.7 233 257-519 160-398 (409)
39 PF13429 TPR_15: Tetratricopep 99.9 3.3E-24 7.1E-29 192.7 14.5 268 31-485 5-276 (280)
40 TIGR00540 hemY_coli hemY prote 99.9 2E-21 4.4E-26 183.4 33.5 304 3-486 85-399 (409)
41 KOG0624 dsRNA-activated protei 99.9 5.7E-22 1.2E-26 166.8 25.2 304 32-518 34-368 (504)
42 KOG1174 Anaphase-promoting com 99.9 3.6E-21 7.8E-26 166.0 29.9 332 27-508 186-522 (564)
43 PF13429 TPR_15: Tetratricopep 99.9 3.5E-24 7.6E-29 192.5 12.0 255 254-520 12-277 (280)
44 KOG1125 TPR repeat-containing 99.9 2.1E-22 4.6E-27 181.4 22.3 244 254-508 289-559 (579)
45 KOG0548 Molecular co-chaperone 99.9 2.1E-21 4.5E-26 173.6 27.2 415 40-535 6-464 (539)
46 PRK12370 invasion protein regu 99.9 3.1E-21 6.8E-26 188.9 28.8 273 31-488 251-537 (553)
47 KOG1125 TPR repeat-containing 99.9 4.1E-22 8.8E-27 179.7 20.4 261 6-442 289-561 (579)
48 KOG1129 TPR repeat-containing 99.9 3.5E-22 7.6E-27 167.0 18.1 276 11-467 188-473 (478)
49 PRK12370 invasion protein regu 99.9 8.3E-21 1.8E-25 186.0 30.1 207 263-511 317-527 (553)
50 KOG1156 N-terminal acetyltrans 99.9 9.7E-20 2.1E-24 166.3 34.4 390 4-513 9-461 (700)
51 PRK10747 putative protoheme IX 99.9 1E-19 2.2E-24 170.9 35.5 297 3-487 85-391 (398)
52 KOG0495 HAT repeat protein [RN 99.9 2.2E-18 4.8E-23 157.4 40.7 410 20-501 364-797 (913)
53 KOG1129 TPR repeat-containing 99.9 1.6E-21 3.4E-26 163.1 18.6 211 252-499 258-471 (478)
54 PRK11189 lipoprotein NlpI; Pro 99.9 1.3E-20 2.9E-25 169.1 24.8 93 15-107 39-135 (296)
55 KOG1127 TPR repeat-containing 99.9 2E-20 4.4E-25 178.1 26.1 421 6-511 403-904 (1238)
56 PRK10747 putative protoheme IX 99.9 1.9E-19 4E-24 169.1 32.7 299 37-515 85-385 (398)
57 KOG4162 Predicted calmodulin-b 99.9 1E-18 2.2E-23 162.9 36.5 406 11-536 293-759 (799)
58 COG3063 PilF Tfp pilus assembl 99.9 7.1E-20 1.5E-24 146.3 24.7 214 247-495 32-245 (250)
59 KOG1174 Anaphase-promoting com 99.9 1.3E-18 2.9E-23 150.3 32.9 428 10-535 51-509 (564)
60 PRK11189 lipoprotein NlpI; Pro 99.9 1.1E-19 2.4E-24 163.2 26.7 218 247-506 61-286 (296)
61 COG2956 Predicted N-acetylgluc 99.9 4.9E-18 1.1E-22 142.3 32.2 280 39-493 38-318 (389)
62 TIGR02521 type_IV_pilW type IV 99.9 2.2E-19 4.7E-24 158.4 26.1 206 248-488 29-234 (234)
63 COG3063 PilF Tfp pilus assembl 99.9 2.2E-19 4.7E-24 143.5 21.4 211 284-535 35-248 (250)
64 PLN03218 maturation of RBCL 1; 99.9 9.3E-17 2E-21 165.0 45.2 382 5-486 373-783 (1060)
65 PLN03081 pentatricopeptide (PP 99.9 4.2E-18 9.2E-23 173.0 35.4 221 250-486 325-557 (697)
66 PLN03081 pentatricopeptide (PP 99.9 1.1E-17 2.5E-22 169.9 38.4 406 5-516 90-553 (697)
67 KOG1156 N-terminal acetyltrans 99.8 8E-17 1.7E-21 147.5 38.0 439 3-523 42-514 (700)
68 TIGR02521 type_IV_pilW type IV 99.8 1.2E-18 2.5E-23 153.7 25.5 201 2-357 31-231 (234)
69 PLN02789 farnesyltranstransfer 99.8 1.9E-18 4.2E-23 154.1 26.4 223 247-504 34-268 (320)
70 PLN03077 Protein ECB2; Provisi 99.8 8.6E-17 1.9E-21 167.6 40.8 252 249-513 423-713 (857)
71 KOG2376 Signal recognition par 99.8 2.9E-15 6.2E-20 136.0 42.3 410 3-505 13-506 (652)
72 PLN02789 farnesyltranstransfer 99.8 1.2E-17 2.7E-22 148.9 27.1 195 266-497 88-313 (320)
73 KOG3785 Uncharacterized conser 99.8 3E-16 6.4E-21 133.4 33.0 379 10-511 30-448 (557)
74 PLN03218 maturation of RBCL 1; 99.8 2.6E-15 5.7E-20 154.4 45.5 379 11-489 415-819 (1060)
75 KOG1127 TPR repeat-containing 99.8 9.2E-17 2E-21 153.6 28.0 181 346-526 800-1002(1238)
76 KOG1915 Cell cycle control pro 99.8 2.8E-14 6E-19 126.2 41.1 422 3-513 74-529 (677)
77 KOG0550 Molecular chaperone (D 99.8 2.1E-18 4.7E-23 149.2 14.2 262 247-519 46-349 (486)
78 TIGR03302 OM_YfiO outer membra 99.8 3.8E-17 8.3E-22 143.2 22.6 185 2-315 33-234 (235)
79 KOG1840 Kinesin light chain [C 99.8 6.2E-17 1.3E-21 150.7 24.8 260 32-451 195-478 (508)
80 PLN03077 Protein ECB2; Provisi 99.8 3.4E-15 7.3E-20 155.8 40.8 181 288-485 528-719 (857)
81 KOG1840 Kinesin light chain [C 99.8 3.6E-17 7.8E-22 152.2 22.9 258 245-524 194-483 (508)
82 COG2956 Predicted N-acetylgluc 99.8 3.7E-15 8E-20 125.3 31.4 236 6-359 39-279 (389)
83 cd05804 StaR_like StaR_like; a 99.8 3.3E-15 7.1E-20 140.2 34.2 316 32-487 2-337 (355)
84 KOG1915 Cell cycle control pro 99.8 5.8E-14 1.3E-18 124.2 38.5 367 24-513 61-493 (677)
85 PF12569 NARP1: NMDA receptor- 99.8 3.1E-14 6.7E-19 134.7 38.6 274 2-359 4-292 (517)
86 PRK15359 type III secretion sy 99.8 4.1E-17 9E-22 129.0 15.1 127 377-506 15-141 (144)
87 KOG0553 TPR repeat-containing 99.8 1.3E-17 2.8E-22 139.4 12.3 121 1-121 80-200 (304)
88 TIGR03302 OM_YfiO outer membra 99.7 1.8E-15 3.9E-20 132.6 20.4 202 245-489 28-235 (235)
89 KOG3785 Uncharacterized conser 99.7 5.2E-14 1.1E-18 119.9 27.8 391 6-490 61-494 (557)
90 KOG1130 Predicted G-alpha GTPa 99.7 4.7E-15 1E-19 128.7 19.3 317 5-472 20-370 (639)
91 PRK15359 type III secretion sy 99.7 1.1E-15 2.4E-20 120.9 14.3 115 4-118 26-140 (144)
92 PF12569 NARP1: NMDA receptor- 99.7 2.1E-13 4.5E-18 129.1 30.7 327 35-526 3-340 (517)
93 PRK14720 transcript cleavage f 99.7 1.4E-13 3E-18 136.1 30.5 289 29-494 24-314 (906)
94 cd05804 StaR_like StaR_like; a 99.7 5.5E-14 1.2E-18 131.9 26.3 210 246-489 2-218 (355)
95 PRK10370 formate-dependent nit 99.7 2.3E-14 5E-19 119.6 20.9 158 333-497 24-184 (198)
96 COG3071 HemY Uncharacterized e 99.7 3.1E-12 6.7E-17 111.4 33.2 118 3-120 85-203 (400)
97 KOG0553 TPR repeat-containing 99.7 2.5E-15 5.3E-20 125.9 13.2 119 390-508 82-200 (304)
98 COG3071 HemY Uncharacterized e 99.6 5.7E-12 1.2E-16 109.8 32.8 233 253-518 156-388 (400)
99 KOG3060 Uncharacterized conser 99.6 1.7E-13 3.7E-18 111.5 21.9 210 264-510 26-244 (289)
100 TIGR02552 LcrH_SycD type III s 99.6 1.4E-14 3.1E-19 114.8 14.6 124 377-500 5-128 (135)
101 KOG1130 Predicted G-alpha GTPa 99.6 1.2E-14 2.6E-19 126.2 13.7 233 252-509 97-373 (639)
102 KOG3060 Uncharacterized conser 99.6 3E-13 6.5E-18 110.1 20.8 187 247-470 49-238 (289)
103 COG5010 TadD Flp pilus assembl 99.6 9.9E-14 2.1E-18 114.2 17.8 175 267-479 50-224 (257)
104 KOG4340 Uncharacterized conser 99.6 5.3E-13 1.1E-17 111.2 22.0 280 11-413 19-334 (459)
105 PRK14720 transcript cleavage f 99.6 2E-13 4.4E-18 135.0 22.8 225 245-519 26-282 (906)
106 PRK15363 pathogenicity island 99.6 4.7E-14 1E-18 108.4 13.6 118 384-501 29-150 (157)
107 KOG1128 Uncharacterized conser 99.6 5E-14 1.1E-18 131.4 16.0 234 250-503 398-635 (777)
108 COG5010 TadD Flp pilus assembl 99.6 4.4E-13 9.6E-18 110.4 19.5 174 302-513 51-224 (257)
109 PRK15363 pathogenicity island 99.6 7.5E-14 1.6E-18 107.2 13.4 101 3-103 36-136 (157)
110 PLN03088 SGT1, suppressor of 99.6 5.2E-14 1.1E-18 129.3 14.9 119 1-119 1-119 (356)
111 PF04733 Coatomer_E: Coatomer 99.6 4E-13 8.6E-18 118.8 19.8 166 253-458 105-271 (290)
112 PRK10370 formate-dependent nit 99.6 6.8E-13 1.5E-17 110.9 20.1 157 255-459 21-180 (198)
113 KOG2376 Signal recognition par 99.6 4E-11 8.7E-16 109.6 32.6 355 38-513 14-480 (652)
114 PRK04841 transcriptional regul 99.5 4.2E-11 9.1E-16 127.0 33.8 353 3-490 375-764 (903)
115 KOG2047 mRNA splicing factor [ 99.5 3.9E-10 8.5E-15 104.2 34.2 89 18-106 84-174 (835)
116 PRK04841 transcriptional regul 99.5 4.3E-11 9.3E-16 126.9 32.7 386 4-522 343-762 (903)
117 PRK15179 Vi polysaccharide bio 99.5 2.4E-12 5.3E-17 126.7 20.6 137 325-491 86-222 (694)
118 PRK10866 outer membrane biogen 99.5 1.3E-11 2.8E-16 106.5 22.6 177 2-310 32-238 (243)
119 TIGR02552 LcrH_SycD type III s 99.5 6.8E-13 1.5E-17 105.1 13.5 111 3-113 18-128 (135)
120 PRK15179 Vi polysaccharide bio 99.5 6.6E-12 1.4E-16 123.7 23.1 168 256-460 55-225 (694)
121 PF04733 Coatomer_E: Coatomer 99.5 2.3E-12 5.1E-17 113.9 17.9 189 265-495 81-274 (290)
122 KOG2047 mRNA splicing factor [ 99.5 9E-10 2E-14 101.9 34.7 238 241-487 340-616 (835)
123 PF13525 YfiO: Outer membrane 99.5 1.3E-11 2.9E-16 104.1 20.8 174 2-304 5-198 (203)
124 KOG1128 Uncharacterized conser 99.5 6E-12 1.3E-16 117.8 19.9 175 249-466 456-632 (777)
125 PLN03088 SGT1, suppressor of 99.5 1.3E-12 2.9E-17 120.1 14.8 116 392-507 5-120 (356)
126 COG4783 Putative Zn-dependent 99.4 3.1E-11 6.7E-16 108.3 20.5 117 3-119 307-423 (484)
127 KOG4648 Uncharacterized conser 99.4 1.2E-13 2.6E-18 117.2 5.1 110 4-113 99-208 (536)
128 TIGR02795 tol_pal_ybgF tol-pal 99.4 9.8E-12 2.1E-16 96.2 12.3 107 2-108 2-114 (119)
129 PRK10866 outer membrane biogen 99.4 2E-10 4.3E-15 99.2 21.4 186 249-447 31-236 (243)
130 KOG0543 FKBP-type peptidyl-pro 99.4 1.1E-11 2.3E-16 109.1 12.8 119 2-120 208-341 (397)
131 PF13525 YfiO: Outer membrane 99.4 2E-10 4.3E-15 97.0 20.1 182 248-442 3-197 (203)
132 COG4235 Cytochrome c biogenesi 99.3 9.5E-11 2.1E-15 99.6 16.9 132 371-502 138-272 (287)
133 TIGR02795 tol_pal_ybgF tol-pal 99.3 2.4E-11 5.3E-16 94.0 12.6 108 389-496 2-115 (119)
134 PF13414 TPR_11: TPR repeat; P 99.3 4.3E-12 9.2E-17 86.7 6.9 66 2-67 3-69 (69)
135 KOG4234 TPR repeat-containing 99.3 2E-11 4.3E-16 95.7 11.1 115 2-116 95-214 (271)
136 KOG4648 Uncharacterized conser 99.3 9.5E-12 2.1E-16 105.9 9.6 239 253-503 100-347 (536)
137 PRK15331 chaperone protein Sic 99.3 4.4E-11 9.5E-16 92.5 12.3 114 3-117 38-151 (165)
138 COG4783 Putative Zn-dependent 99.3 5.1E-10 1.1E-14 100.7 20.8 133 372-504 323-455 (484)
139 KOG4340 Uncharacterized conser 99.3 6.3E-10 1.4E-14 93.2 19.4 208 260-481 20-265 (459)
140 PF12895 Apc3: Anaphase-promot 99.3 6.8E-12 1.5E-16 89.3 6.9 82 14-96 1-84 (84)
141 PF14938 SNAP: Soluble NSF att 99.3 7.6E-10 1.7E-14 99.0 21.2 225 264-530 29-270 (282)
142 PRK15331 chaperone protein Sic 99.3 7.3E-11 1.6E-15 91.3 12.5 122 384-506 32-153 (165)
143 KOG2053 Mitochondrial inherita 99.3 2.7E-07 5.8E-12 89.4 38.8 109 11-120 18-126 (932)
144 KOG0543 FKBP-type peptidyl-pro 99.3 5.5E-11 1.2E-15 104.7 13.2 120 392-511 211-345 (397)
145 cd00189 TPR Tetratricopeptide 99.3 4.1E-11 8.8E-16 89.0 10.9 99 4-102 2-100 (100)
146 COG4235 Cytochrome c biogenesi 99.3 2.7E-10 5.9E-15 96.9 16.5 127 52-321 138-264 (287)
147 PF13414 TPR_11: TPR repeat; P 99.3 1.7E-11 3.6E-16 83.8 7.2 67 35-101 2-69 (69)
148 PRK02603 photosystem I assembl 99.3 9.3E-11 2E-15 96.6 12.8 106 385-490 31-153 (172)
149 PF13432 TPR_16: Tetratricopep 99.3 2.7E-11 5.9E-16 81.5 7.6 64 7-70 2-65 (65)
150 CHL00033 ycf3 photosystem I as 99.2 2.4E-10 5.1E-15 93.9 14.3 104 388-491 34-154 (168)
151 PRK02603 photosystem I assembl 99.2 1.7E-10 3.7E-15 95.1 13.1 102 2-103 35-153 (172)
152 cd00189 TPR Tetratricopeptide 99.2 1.3E-10 2.8E-15 86.3 11.2 99 391-489 2-100 (100)
153 COG4785 NlpI Lipoprotein NlpI, 99.2 2.8E-09 6.1E-14 85.1 18.3 104 2-105 65-168 (297)
154 COG4105 ComL DNA uptake lipopr 99.2 1.2E-08 2.5E-13 85.1 21.9 187 2-317 34-237 (254)
155 KOG3081 Vesicle coat complex C 99.2 4.9E-08 1.1E-12 81.0 25.2 169 251-459 109-278 (299)
156 CHL00033 ycf3 photosystem I as 99.2 5.2E-10 1.1E-14 91.9 14.0 109 9-117 6-119 (168)
157 PF09976 TPR_21: Tetratricopep 99.2 1.3E-09 2.8E-14 86.8 15.8 132 345-484 8-145 (145)
158 PF13432 TPR_16: Tetratricopep 99.2 7.8E-11 1.7E-15 79.2 7.4 65 40-104 1-65 (65)
159 PF14938 SNAP: Soluble NSF att 99.2 9.4E-10 2E-14 98.4 16.5 224 246-495 31-275 (282)
160 PRK10803 tol-pal system protei 99.2 4.6E-10 1E-14 97.5 13.7 107 3-109 143-256 (263)
161 KOG1941 Acetylcholine receptor 99.2 7.9E-09 1.7E-13 89.2 19.7 317 4-485 8-359 (518)
162 PF12895 Apc3: Anaphase-promot 99.2 5.5E-11 1.2E-15 84.6 5.8 81 402-483 2-84 (84)
163 PRK10803 tol-pal system protei 99.1 1.6E-09 3.6E-14 94.1 14.5 109 388-496 141-256 (263)
164 PF13512 TPR_18: Tetratricopep 99.1 1.8E-09 4E-14 81.7 11.7 105 2-106 10-135 (142)
165 PF09976 TPR_21: Tetratricopep 99.1 1E-08 2.2E-13 81.7 16.8 133 249-416 10-145 (145)
166 PF14559 TPR_19: Tetratricopep 99.1 3.4E-10 7.4E-15 77.0 6.8 66 13-78 2-67 (68)
167 KOG4234 TPR repeat-containing 99.1 1.3E-09 2.9E-14 85.7 10.6 119 392-510 98-221 (271)
168 COG4785 NlpI Lipoprotein NlpI, 99.1 1.6E-08 3.5E-13 80.8 16.3 104 246-360 61-164 (297)
169 PRK11906 transcriptional regul 99.0 9.2E-09 2E-13 93.4 15.5 122 373-494 276-409 (458)
170 COG1729 Uncharacterized protei 99.0 5.9E-09 1.3E-13 87.8 13.2 108 3-110 142-255 (262)
171 PRK10153 DNA-binding transcrip 99.0 1.1E-08 2.5E-13 98.1 16.8 120 372-492 359-488 (517)
172 KOG1941 Acetylcholine receptor 99.0 1.6E-07 3.6E-12 81.3 21.6 255 250-509 6-304 (518)
173 KOG1070 rRNA processing protei 99.0 6.1E-08 1.3E-12 97.8 21.4 216 267-489 1441-1666(1710)
174 PRK10153 DNA-binding transcrip 99.0 2.9E-08 6.4E-13 95.3 18.8 152 278-459 331-489 (517)
175 COG4105 ComL DNA uptake lipopr 99.0 2.1E-07 4.6E-12 77.7 21.0 191 249-456 33-237 (254)
176 KOG4642 Chaperone-dependent E3 99.0 1.1E-09 2.3E-14 88.8 7.0 99 1-99 9-107 (284)
177 COG0457 NrfG FOG: TPR repeat [ 99.0 4.4E-06 9.5E-11 74.2 31.7 168 253-455 98-268 (291)
178 PF14559 TPR_19: Tetratricopep 99.0 2.1E-09 4.5E-14 73.1 7.2 67 46-112 1-67 (68)
179 KOG3081 Vesicle coat complex C 99.0 1.9E-06 4.2E-11 71.7 25.4 168 283-494 107-279 (299)
180 PF12688 TPR_5: Tetratrico pep 99.0 1.7E-08 3.6E-13 75.6 12.2 97 2-98 1-103 (120)
181 PRK11906 transcriptional regul 99.0 5.5E-08 1.2E-12 88.5 17.4 171 288-486 259-436 (458)
182 KOG1070 rRNA processing protei 99.0 8.9E-07 1.9E-11 89.8 27.1 171 263-469 1510-1682(1710)
183 PF13371 TPR_9: Tetratricopept 99.0 4.2E-09 9E-14 72.8 7.8 69 9-77 2-70 (73)
184 KOG3617 WD40 and TPR repeat-co 98.9 6.8E-07 1.5E-11 85.7 24.3 202 251-483 913-1171(1416)
185 PF13371 TPR_9: Tetratricopept 98.9 6.5E-09 1.4E-13 71.8 7.7 67 430-496 2-68 (73)
186 COG0457 NrfG FOG: TPR repeat [ 98.9 8.3E-07 1.8E-11 79.0 23.6 204 249-489 58-268 (291)
187 PF09295 ChAPs: ChAPs (Chs5p-A 98.9 3.7E-08 8.1E-13 90.2 14.2 109 373-484 187-295 (395)
188 COG1729 Uncharacterized protei 98.9 5.8E-08 1.3E-12 81.9 14.0 105 392-496 144-254 (262)
189 PF13512 TPR_18: Tetratricopep 98.9 7E-08 1.5E-12 73.3 12.3 109 387-495 8-137 (142)
190 PF12688 TPR_5: Tetratrico pep 98.9 6.1E-08 1.3E-12 72.6 11.9 96 390-485 2-103 (120)
191 COG4700 Uncharacterized protei 98.8 1.5E-06 3.3E-11 68.0 19.1 155 292-484 64-220 (251)
192 KOG4555 TPR repeat-containing 98.8 1E-07 2.3E-12 69.5 11.5 100 3-102 44-147 (175)
193 KOG0376 Serine-threonine phosp 98.8 6.6E-09 1.4E-13 93.7 6.4 119 1-119 3-121 (476)
194 COG3898 Uncharacterized membra 98.8 2.4E-05 5.2E-10 69.0 27.6 298 6-452 88-392 (531)
195 KOG1914 mRNA cleavage and poly 98.8 5.7E-05 1.2E-09 69.7 30.8 417 26-511 10-492 (656)
196 COG3898 Uncharacterized membra 98.8 8.7E-05 1.9E-09 65.6 30.4 212 261-511 165-383 (531)
197 PF09295 ChAPs: ChAPs (Chs5p-A 98.8 1.3E-07 2.7E-12 86.8 12.7 116 394-512 174-289 (395)
198 KOG2471 TPR repeat-containing 98.7 2.9E-06 6.2E-11 76.7 20.2 89 10-98 214-311 (696)
199 KOG2053 Mitochondrial inherita 98.7 5.5E-05 1.2E-09 74.0 29.6 223 47-422 20-259 (932)
200 KOG0545 Aryl-hydrocarbon recep 98.7 8E-08 1.7E-12 78.4 9.1 104 3-106 179-300 (329)
201 KOG0551 Hsp90 co-chaperone CNS 98.7 6.1E-08 1.3E-12 82.9 8.7 105 2-106 81-189 (390)
202 KOG4555 TPR repeat-containing 98.7 3.2E-06 6.9E-11 61.9 15.4 105 249-360 42-146 (175)
203 COG4700 Uncharacterized protei 98.7 1.1E-05 2.5E-10 63.3 19.2 158 10-313 64-222 (251)
204 PF06552 TOM20_plant: Plant sp 98.7 1.8E-07 3.9E-12 73.3 9.2 96 18-113 7-123 (186)
205 PLN03098 LPA1 LOW PSII ACCUMUL 98.7 9.6E-08 2.1E-12 86.8 8.8 69 31-99 70-141 (453)
206 PLN03098 LPA1 LOW PSII ACCUMUL 98.7 9.3E-08 2E-12 86.9 8.4 69 384-452 70-141 (453)
207 KOG1586 Protein required for f 98.7 3.7E-05 8.1E-10 62.9 22.1 187 247-459 31-231 (288)
208 KOG2300 Uncharacterized conser 98.6 0.0004 8.7E-09 63.4 35.2 104 2-105 7-124 (629)
209 KOG2471 TPR repeat-containing 98.6 3.3E-06 7.1E-11 76.4 16.5 123 384-506 235-384 (696)
210 PF06552 TOM20_plant: Plant sp 98.6 4.5E-07 9.8E-12 71.1 9.4 107 370-500 6-123 (186)
211 PF13424 TPR_12: Tetratricopep 98.6 3.8E-08 8.2E-13 68.9 3.1 63 424-486 6-75 (78)
212 KOG4507 Uncharacterized conser 98.6 2.6E-05 5.6E-10 72.4 21.8 107 396-502 614-721 (886)
213 KOG1585 Protein required for f 98.6 2.3E-05 5E-10 64.5 19.0 186 290-501 37-238 (308)
214 KOG3617 WD40 and TPR repeat-co 98.6 0.00011 2.3E-09 71.4 26.3 233 252-514 860-1168(1416)
215 KOG1586 Protein required for f 98.6 1.4E-05 3E-10 65.3 17.5 194 260-493 24-231 (288)
216 KOG2796 Uncharacterized conser 98.5 4.9E-05 1.1E-09 63.4 20.2 236 248-501 67-333 (366)
217 PF13424 TPR_12: Tetratricopep 98.5 5.5E-07 1.2E-11 63.0 7.7 73 281-357 2-74 (78)
218 KOG4642 Chaperone-dependent E3 98.5 5.8E-07 1.3E-11 73.3 8.4 108 394-501 15-127 (284)
219 KOG2796 Uncharacterized conser 98.4 0.00014 3E-09 60.8 19.8 143 37-319 178-321 (366)
220 KOG0376 Serine-threonine phosp 98.4 9.8E-07 2.1E-11 80.1 8.0 114 393-506 8-121 (476)
221 PF13428 TPR_14: Tetratricopep 98.4 6.9E-07 1.5E-11 53.9 4.8 41 37-77 2-42 (44)
222 KOG0545 Aryl-hydrocarbon recep 98.4 8.8E-06 1.9E-10 66.9 12.2 108 389-496 178-303 (329)
223 PF13428 TPR_14: Tetratricopep 98.4 9.1E-07 2E-11 53.4 4.9 42 458-499 2-43 (44)
224 PF07079 DUF1347: Protein of u 98.3 0.0023 4.9E-08 58.3 36.4 95 5-99 9-108 (549)
225 KOG1308 Hsp70-interacting prot 98.3 2.7E-07 5.9E-12 79.5 2.5 101 2-102 114-214 (377)
226 KOG1585 Protein required for f 98.3 0.00012 2.6E-09 60.4 15.9 207 248-481 29-251 (308)
227 KOG1258 mRNA processing protei 98.3 0.0047 1E-07 58.5 33.7 407 19-504 62-488 (577)
228 PF04184 ST7: ST7 protein; In 98.2 0.00011 2.4E-09 67.5 17.1 192 291-498 175-387 (539)
229 PF13431 TPR_17: Tetratricopep 98.2 1.2E-06 2.6E-11 49.0 2.9 32 446-477 2-33 (34)
230 PF13431 TPR_17: Tetratricopep 98.2 1.1E-06 2.4E-11 49.1 2.4 32 25-56 2-33 (34)
231 KOG1550 Extracellular protein 98.2 0.001 2.2E-08 65.7 24.1 104 6-113 248-369 (552)
232 PF05843 Suf: Suppressor of fo 98.2 0.0001 2.2E-09 65.8 15.6 112 384-495 30-145 (280)
233 PF04184 ST7: ST7 protein; In 98.1 0.00089 1.9E-08 61.8 20.9 62 250-311 259-322 (539)
234 PF10300 DUF3808: Protein of u 98.1 0.0025 5.4E-08 61.4 25.1 116 371-486 249-376 (468)
235 COG5107 RNA14 Pre-mRNA 3'-end 98.1 0.0063 1.4E-07 55.4 29.4 89 24-113 30-118 (660)
236 KOG1258 mRNA processing protei 98.1 0.0097 2.1E-07 56.5 27.2 112 366-477 308-420 (577)
237 KOG1550 Extracellular protein 98.1 0.0019 4.1E-08 63.9 24.1 284 17-489 227-541 (552)
238 PF05843 Suf: Suppressor of fo 98.1 3.3E-05 7.1E-10 69.0 10.7 123 391-513 3-129 (280)
239 KOG3616 Selective LIM binding 98.1 0.006 1.3E-07 59.0 25.6 175 287-479 664-846 (1636)
240 KOG2610 Uncharacterized conser 98.1 0.00025 5.5E-09 61.4 15.0 165 287-484 106-274 (491)
241 PF00515 TPR_1: Tetratricopept 98.1 7.7E-06 1.7E-10 46.2 4.1 30 38-67 3-32 (34)
242 KOG2300 Uncharacterized conser 98.1 0.0097 2.1E-07 54.8 35.0 433 5-506 49-540 (629)
243 PF00515 TPR_1: Tetratricopept 98.0 7.1E-06 1.5E-10 46.3 3.6 34 2-35 1-34 (34)
244 PF07719 TPR_2: Tetratricopept 98.0 1E-05 2.3E-10 45.7 4.3 33 458-490 2-34 (34)
245 PF07719 TPR_2: Tetratricopept 98.0 1.3E-05 2.9E-10 45.2 4.4 29 39-67 4-32 (34)
246 KOG3616 Selective LIM binding 98.0 0.0046 9.9E-08 59.8 23.1 216 252-490 767-1028(1636)
247 KOG2610 Uncharacterized conser 98.0 0.00062 1.4E-08 59.1 15.9 164 253-450 106-274 (491)
248 KOG1308 Hsp70-interacting prot 98.0 7.9E-06 1.7E-10 70.8 4.3 115 396-511 121-235 (377)
249 KOG0551 Hsp90 co-chaperone CNS 97.9 0.0007 1.5E-08 58.8 14.9 102 248-360 79-184 (390)
250 PF02259 FAT: FAT domain; Int 97.9 0.022 4.7E-07 53.5 27.4 66 247-312 143-212 (352)
251 PF03704 BTAD: Bacterial trans 97.9 0.00033 7.2E-09 55.9 12.3 95 4-98 8-124 (146)
252 KOG0985 Vesicle coat protein c 97.9 0.0088 1.9E-07 60.1 23.6 50 254-311 1198-1247(1666)
253 PF02259 FAT: FAT domain; Int 97.9 0.025 5.5E-07 53.1 26.6 139 325-489 146-341 (352)
254 PF10300 DUF3808: Protein of u 97.9 0.031 6.7E-07 54.0 30.3 124 402-525 246-374 (468)
255 PF10345 Cohesin_load: Cohesin 97.8 0.044 9.6E-07 55.3 30.6 84 18-102 37-131 (608)
256 PF13281 DUF4071: Domain of un 97.8 0.0055 1.2E-07 55.8 19.8 182 283-494 140-342 (374)
257 PF13281 DUF4071: Domain of un 97.8 0.0059 1.3E-07 55.7 19.9 177 249-456 140-338 (374)
258 KOG0530 Protein farnesyltransf 97.8 0.018 4E-07 48.6 20.6 238 257-531 50-303 (318)
259 COG2976 Uncharacterized protei 97.8 0.0021 4.6E-08 51.6 14.3 138 345-491 50-193 (207)
260 COG3118 Thioredoxin domain-con 97.8 0.0057 1.2E-07 52.8 17.8 153 249-438 133-287 (304)
261 COG3118 Thioredoxin domain-con 97.7 0.00094 2E-08 57.4 12.8 116 4-119 136-287 (304)
262 PF03704 BTAD: Bacterial trans 97.7 0.00093 2E-08 53.3 12.1 118 395-525 12-130 (146)
263 KOG2396 HAT (Half-A-TPR) repea 97.7 0.047 1E-06 50.8 32.8 95 20-114 89-184 (568)
264 KOG0985 Vesicle coat protein c 97.7 0.015 3.3E-07 58.5 21.4 198 257-482 1140-1337(1666)
265 COG2976 Uncharacterized protei 97.7 0.0012 2.5E-08 53.0 11.5 101 4-105 91-194 (207)
266 PF13181 TPR_8: Tetratricopept 97.6 9E-05 2E-09 41.7 3.5 32 458-489 2-33 (34)
267 PRK13184 pknD serine/threonine 97.6 0.14 3E-06 53.4 27.5 106 7-113 480-595 (932)
268 PF13181 TPR_8: Tetratricopept 97.5 0.00011 2.4E-09 41.4 3.2 30 38-67 3-32 (34)
269 KOG2041 WD40 repeat protein [G 97.5 0.041 8.8E-07 53.2 20.7 143 248-415 794-936 (1189)
270 PF10345 Cohesin_load: Cohesin 97.4 0.21 4.6E-06 50.5 32.4 215 262-481 151-428 (608)
271 KOG0890 Protein kinase of the 97.3 0.42 9.2E-06 53.6 32.1 156 300-487 1645-1834(2382)
272 PF04781 DUF627: Protein of un 97.3 0.0025 5.4E-08 46.1 8.5 92 8-99 2-107 (111)
273 KOG2041 WD40 repeat protein [G 97.3 0.14 3.1E-06 49.7 22.2 196 257-483 741-936 (1189)
274 PF04910 Tcf25: Transcriptiona 97.3 0.0084 1.8E-07 55.4 14.2 170 275-489 31-225 (360)
275 KOG0530 Protein farnesyltransf 97.3 0.087 1.9E-06 44.7 21.1 81 266-357 94-175 (318)
276 COG2909 MalT ATP-dependent tra 97.3 0.24 5.2E-06 49.8 27.5 213 249-487 414-648 (894)
277 PF13174 TPR_6: Tetratricopept 97.3 0.00043 9.3E-09 38.5 3.6 30 39-68 3-32 (33)
278 PF14853 Fis1_TPR_C: Fis1 C-te 97.3 0.0013 2.9E-08 40.8 5.8 39 38-76 3-41 (53)
279 PF14853 Fis1_TPR_C: Fis1 C-te 97.3 0.002 4.3E-08 40.0 6.5 45 459-503 3-47 (53)
280 PF08424 NRDE-2: NRDE-2, neces 97.3 0.019 4.1E-07 52.6 15.9 95 22-116 5-111 (321)
281 PF08631 SPO22: Meiosis protei 97.2 0.14 3E-06 46.0 22.4 224 260-484 3-273 (278)
282 COG0790 FOG: TPR repeat, SEL1 97.2 0.056 1.2E-06 49.1 19.0 168 296-505 53-236 (292)
283 COG0790 FOG: TPR repeat, SEL1 97.2 0.16 3.4E-06 46.2 23.5 192 258-490 49-270 (292)
284 KOG3824 Huntingtin interacting 97.2 0.0013 2.9E-08 56.4 7.1 75 39-113 119-193 (472)
285 PF13174 TPR_6: Tetratricopept 97.2 0.00058 1.3E-08 38.0 3.5 31 459-489 2-32 (33)
286 KOG4507 Uncharacterized conser 97.2 0.0012 2.6E-08 61.8 7.2 109 8-116 613-722 (886)
287 KOG1464 COP9 signalosome, subu 97.2 0.054 1.2E-06 46.1 15.9 51 262-312 39-93 (440)
288 PF07079 DUF1347: Protein of u 97.2 0.2 4.4E-06 46.2 28.4 134 365-504 389-543 (549)
289 COG2909 MalT ATP-dependent tra 97.2 0.35 7.5E-06 48.8 30.9 207 251-482 459-684 (894)
290 PF14561 TPR_20: Tetratricopep 97.1 0.005 1.1E-07 43.7 8.6 75 21-95 7-83 (90)
291 PF09613 HrpB1_HrpK: Bacterial 97.1 0.0084 1.8E-07 47.0 10.1 109 3-113 11-119 (160)
292 KOG1914 mRNA cleavage and poly 97.1 0.29 6.4E-06 46.3 36.6 116 373-488 384-503 (656)
293 PF09613 HrpB1_HrpK: Bacterial 97.0 0.052 1.1E-06 42.7 13.9 117 390-509 11-127 (160)
294 PF13176 TPR_7: Tetratricopept 97.0 0.0011 2.5E-08 37.6 3.4 25 460-484 2-26 (36)
295 KOG3824 Huntingtin interacting 97.0 0.0022 4.8E-08 55.1 6.5 74 393-466 120-193 (472)
296 PF12968 DUF3856: Domain of Un 97.0 0.019 4.1E-07 41.8 10.2 94 6-99 13-129 (144)
297 PRK10941 hypothetical protein; 97.0 0.0071 1.5E-07 53.0 9.8 74 424-497 182-255 (269)
298 KOG1310 WD40 repeat protein [G 97.0 0.0032 6.8E-08 58.4 7.8 104 2-105 374-480 (758)
299 PRK10941 hypothetical protein; 96.9 0.0083 1.8E-07 52.5 9.9 80 37-116 182-261 (269)
300 KOG0890 Protein kinase of the 96.9 1.1 2.5E-05 50.5 30.8 119 385-505 1666-1803(2382)
301 PF04781 DUF627: Protein of un 96.9 0.047 1E-06 39.7 11.5 47 290-340 2-48 (111)
302 PF04910 Tcf25: Transcriptiona 96.9 0.095 2.1E-06 48.6 16.7 86 29-114 33-148 (360)
303 KOG3783 Uncharacterized conser 96.9 0.45 9.7E-06 45.2 20.6 66 425-490 451-524 (546)
304 PF13176 TPR_7: Tetratricopept 96.8 0.0015 3.3E-08 37.1 3.1 25 73-97 2-26 (36)
305 PF08631 SPO22: Meiosis protei 96.8 0.35 7.7E-06 43.4 21.5 173 294-486 3-186 (278)
306 PF14561 TPR_20: Tetratricopep 96.8 0.014 3E-07 41.5 8.2 65 443-507 8-74 (90)
307 PF08424 NRDE-2: NRDE-2, neces 96.7 0.16 3.6E-06 46.5 16.9 110 378-487 54-184 (321)
308 smart00028 TPR Tetratricopepti 96.7 0.004 8.6E-08 34.2 4.1 32 458-489 2-33 (34)
309 PF09986 DUF2225: Uncharacteri 96.6 0.074 1.6E-06 45.1 12.9 99 299-420 92-196 (214)
310 COG4976 Predicted methyltransf 96.5 0.0049 1.1E-07 50.8 4.8 61 45-105 4-64 (287)
311 smart00028 TPR Tetratricopepti 96.5 0.0052 1.1E-07 33.7 3.8 27 40-66 5-31 (34)
312 PF10602 RPN7: 26S proteasome 96.5 0.16 3.5E-06 41.7 13.6 107 248-359 34-143 (177)
313 KOG3783 Uncharacterized conser 96.5 0.43 9.4E-06 45.3 17.6 262 19-317 250-524 (546)
314 TIGR02561 HrpB1_HrpK type III 96.4 0.047 1E-06 42.1 9.1 85 3-87 11-95 (153)
315 KOG3364 Membrane protein invol 96.3 0.11 2.4E-06 39.1 10.6 83 422-504 31-118 (149)
316 PF12968 DUF3856: Domain of Un 96.3 0.1 2.2E-06 38.2 9.9 91 396-486 16-129 (144)
317 COG3914 Spy Predicted O-linked 96.3 0.12 2.5E-06 49.4 13.1 124 384-507 60-192 (620)
318 COG4976 Predicted methyltransf 96.2 0.0096 2.1E-07 49.1 5.1 61 10-70 3-63 (287)
319 PF09986 DUF2225: Uncharacteri 96.2 0.066 1.4E-06 45.4 10.1 89 401-489 89-197 (214)
320 TIGR02561 HrpB1_HrpK type III 96.1 0.1 2.2E-06 40.4 9.9 80 395-474 16-95 (153)
321 COG3914 Spy Predicted O-linked 96.0 0.16 3.4E-06 48.6 12.4 131 402-533 44-178 (620)
322 KOG4814 Uncharacterized conser 96.0 0.052 1.1E-06 52.0 9.2 96 4-99 356-457 (872)
323 KOG3364 Membrane protein invol 95.9 0.28 6E-06 37.1 11.0 80 387-466 30-114 (149)
324 PF10602 RPN7: 26S proteasome 95.9 0.11 2.5E-06 42.6 10.2 98 3-100 37-143 (177)
325 COG5191 Uncharacterized conser 95.8 0.022 4.8E-07 49.3 5.8 79 383-461 101-180 (435)
326 PF10579 Rapsyn_N: Rapsyn N-te 95.8 0.077 1.7E-06 35.7 6.9 62 3-64 7-71 (80)
327 PRK15180 Vi polysaccharide bio 95.8 0.068 1.5E-06 49.4 9.0 123 368-490 302-424 (831)
328 COG5159 RPN6 26S proteasome re 95.8 1.2 2.5E-05 38.7 22.5 103 253-361 128-238 (421)
329 COG5191 Uncharacterized conser 95.8 0.021 4.6E-07 49.4 5.4 90 25-114 96-186 (435)
330 PF15015 NYD-SP12_N: Spermatog 95.8 0.053 1.2E-06 49.2 8.1 92 6-97 180-289 (569)
331 KOG1310 WD40 repeat protein [G 95.7 0.041 9E-07 51.4 7.4 97 396-492 381-480 (758)
332 KOG0529 Protein geranylgeranyl 95.7 1.3 2.8E-05 40.8 16.3 130 374-503 94-241 (421)
333 KOG1463 26S proteasome regulat 95.6 1.6 3.4E-05 39.0 24.0 190 253-467 131-328 (411)
334 COG4649 Uncharacterized protei 95.5 0.97 2.1E-05 36.0 16.0 59 256-314 64-124 (221)
335 COG4649 Uncharacterized protei 95.5 0.98 2.1E-05 36.0 14.7 147 345-500 55-209 (221)
336 PRK15180 Vi polysaccharide bio 95.4 0.28 6E-06 45.6 11.5 126 260-422 299-424 (831)
337 PRK13184 pknD serine/threonine 95.3 4.6 0.0001 42.6 23.7 90 265-361 534-623 (932)
338 COG5107 RNA14 Pre-mRNA 3'-end 95.0 3.2 6.8E-05 38.8 33.7 232 244-490 296-535 (660)
339 KOG1464 COP9 signalosome, subu 95.0 2.1 4.6E-05 36.8 18.9 102 255-361 150-263 (440)
340 KOG1538 Uncharacterized conser 94.8 1.6 3.4E-05 42.6 14.7 212 253-483 588-830 (1081)
341 PF13374 TPR_10: Tetratricopep 94.8 0.049 1.1E-06 32.0 3.5 27 38-64 4-30 (42)
342 PF15015 NYD-SP12_N: Spermatog 94.7 0.46 9.9E-06 43.5 10.5 108 396-503 183-311 (569)
343 PF10516 SHNi-TPR: SHNi-TPR; 94.6 0.054 1.2E-06 30.9 3.1 30 2-31 1-30 (38)
344 PF13374 TPR_10: Tetratricopep 94.6 0.068 1.5E-06 31.4 3.8 29 458-486 3-31 (42)
345 KOG1839 Uncharacterized protei 94.5 0.49 1.1E-05 50.0 11.7 98 2-99 932-1044(1236)
346 KOG0546 HSP90 co-chaperone CPR 94.5 0.073 1.6E-06 47.3 5.1 115 5-119 225-358 (372)
347 KOG4814 Uncharacterized conser 94.4 5.7 0.00012 39.0 20.8 104 325-452 354-457 (872)
348 COG2912 Uncharacterized conser 94.2 0.32 6.9E-06 42.1 8.3 71 425-495 183-253 (269)
349 KOG2422 Uncharacterized conser 94.2 5.8 0.00012 38.4 17.9 50 263-312 251-312 (665)
350 PF04190 DUF410: Protein of un 94.2 3.8 8.2E-05 36.2 17.7 122 385-506 86-243 (260)
351 PF04053 Coatomer_WDAD: Coatom 94.2 3.6 7.7E-05 39.6 16.0 158 259-483 270-428 (443)
352 COG5159 RPN6 26S proteasome re 94.2 3.6 7.7E-05 35.9 16.6 208 254-486 7-235 (421)
353 PF11207 DUF2989: Protein of u 94.0 1.7 3.6E-05 36.0 11.6 54 422-476 140-197 (203)
354 COG2912 Uncharacterized conser 94.0 0.27 5.8E-06 42.6 7.4 78 37-114 182-259 (269)
355 PF07720 TPR_3: Tetratricopept 94.0 0.18 3.8E-06 28.4 4.2 32 458-489 2-35 (36)
356 PF12862 Apc5: Anaphase-promot 93.9 0.23 5E-06 35.8 6.0 28 72-99 43-70 (94)
357 PF10579 Rapsyn_N: Rapsyn N-te 93.9 1.1 2.4E-05 30.4 8.5 65 249-313 5-72 (80)
358 PF07720 TPR_3: Tetratricopept 93.6 0.23 5E-06 27.9 4.3 18 41-58 6-23 (36)
359 PF07721 TPR_4: Tetratricopept 93.5 0.12 2.7E-06 26.5 3.0 23 459-481 3-25 (26)
360 PF10516 SHNi-TPR: SHNi-TPR; 93.5 0.13 2.7E-06 29.4 3.2 29 71-99 2-30 (38)
361 KOG2422 Uncharacterized conser 93.4 3.6 7.7E-05 39.7 14.0 98 243-340 277-399 (665)
362 COG3629 DnrI DNA-binding trans 93.4 1 2.3E-05 39.6 10.1 64 36-99 153-216 (280)
363 KOG3807 Predicted membrane pro 93.4 5.6 0.00012 35.5 18.7 56 256-313 190-245 (556)
364 KOG4151 Myosin assembly protei 93.3 0.39 8.5E-06 47.7 8.1 115 3-117 54-174 (748)
365 PF07721 TPR_4: Tetratricopept 93.3 0.15 3.4E-06 26.2 3.1 16 41-56 6-21 (26)
366 KOG0546 HSP90 co-chaperone CPR 93.3 0.25 5.4E-06 44.1 6.1 113 396-508 229-360 (372)
367 PF12862 Apc5: Anaphase-promot 93.2 1.2 2.5E-05 32.1 8.7 59 260-318 8-75 (94)
368 KOG2581 26S proteasome regulat 93.1 4.7 0.0001 37.1 13.7 33 389-421 247-279 (493)
369 COG3629 DnrI DNA-binding trans 93.0 0.48 1E-05 41.7 7.4 63 3-65 154-216 (280)
370 COG1747 Uncharacterized N-term 92.7 9.5 0.00021 36.5 21.2 96 249-358 65-160 (711)
371 KOG1839 Uncharacterized protei 92.6 1.3 2.9E-05 47.0 11.0 141 384-524 968-1132(1236)
372 PRK11619 lytic murein transgly 92.5 14 0.0003 37.8 35.7 120 291-417 248-374 (644)
373 KOG2396 HAT (Half-A-TPR) repea 92.2 11 0.00024 35.9 37.7 66 13-78 116-182 (568)
374 COG3947 Response regulator con 92.0 0.65 1.4E-05 40.4 6.8 67 459-525 281-347 (361)
375 PF10373 EST1_DNA_bind: Est1 D 91.8 0.83 1.8E-05 41.1 8.1 62 408-469 1-62 (278)
376 COG4941 Predicted RNA polymera 91.7 9.6 0.00021 34.3 16.1 188 266-498 212-406 (415)
377 PF14863 Alkyl_sulf_dimr: Alky 91.6 0.48 1E-05 36.9 5.2 48 37-84 71-118 (141)
378 PF00244 14-3-3: 14-3-3 protei 91.6 8.6 0.00019 33.4 14.0 48 266-313 142-198 (236)
379 PF04053 Coatomer_WDAD: Coatom 90.6 17 0.00037 35.1 15.9 47 10-58 269-317 (443)
380 PF11207 DUF2989: Protein of u 90.0 10 0.00022 31.6 15.7 72 438-510 121-197 (203)
381 PF10255 Paf67: RNA polymerase 89.9 4.5 9.8E-05 38.0 10.7 106 392-498 125-242 (404)
382 KOG0128 RNA-binding protein SA 89.9 25 0.00054 36.0 25.5 61 51-111 94-154 (881)
383 KOG1538 Uncharacterized conser 89.8 22 0.00048 35.2 16.7 80 11-96 565-658 (1081)
384 KOG0529 Protein geranylgeranyl 89.3 19 0.0004 33.6 18.8 104 404-507 90-199 (421)
385 COG3947 Response regulator con 89.2 1.4 3.1E-05 38.4 6.4 61 37-97 280-340 (361)
386 PF12739 TRAPPC-Trs85: ER-Golg 89.1 22 0.00047 34.2 17.0 176 286-488 210-401 (414)
387 COG5536 BET4 Protein prenyltra 89.1 15 0.00032 32.2 12.2 127 377-503 96-239 (328)
388 PF10373 EST1_DNA_bind: Est1 D 89.0 1.5 3.2E-05 39.5 7.1 62 374-435 1-62 (278)
389 cd02682 MIT_AAA_Arch MIT: doma 88.6 1.5 3.3E-05 29.6 5.0 29 2-30 6-34 (75)
390 PF11817 Foie-gras_1: Foie gra 88.4 17 0.00036 32.0 14.6 57 425-481 180-242 (247)
391 smart00386 HAT HAT (Half-A-TPR 87.9 1.4 2.9E-05 23.7 4.0 20 54-73 5-24 (33)
392 TIGR03504 FimV_Cterm FimV C-te 87.4 3.1 6.8E-05 24.7 5.2 24 461-484 3-26 (44)
393 smart00386 HAT HAT (Half-A-TPR 87.0 1.7 3.7E-05 23.3 4.0 29 471-499 1-29 (33)
394 COG4455 ImpE Protein of avirul 86.9 9 0.00019 32.2 9.3 64 257-320 8-71 (273)
395 PF10255 Paf67: RNA polymerase 86.5 1.6 3.4E-05 40.9 5.5 60 38-98 124-192 (404)
396 TIGR03504 FimV_Cterm FimV C-te 86.4 1.6 3.5E-05 25.9 3.7 25 40-64 3-27 (44)
397 COG4455 ImpE Protein of avirul 86.4 10 0.00023 31.8 9.4 63 396-458 8-70 (273)
398 PF14863 Alkyl_sulf_dimr: Alky 85.8 4.2 9E-05 31.8 6.8 55 457-511 70-124 (141)
399 COG1747 Uncharacterized N-term 85.7 35 0.00076 32.9 21.2 73 42-116 72-144 (711)
400 smart00299 CLH Clathrin heavy 85.4 16 0.00034 28.6 12.3 50 258-308 15-64 (140)
401 PF04190 DUF410: Protein of un 85.3 26 0.00056 31.1 17.4 210 247-471 7-242 (260)
402 KOG4151 Myosin assembly protei 85.3 4.2 9.2E-05 40.9 8.0 116 395-510 59-180 (748)
403 KOG1463 26S proteasome regulat 85.2 29 0.00063 31.5 23.4 195 300-502 104-329 (411)
404 KOG2581 26S proteasome regulat 84.5 35 0.00076 31.8 19.4 63 393-455 213-279 (493)
405 PF09670 Cas_Cas02710: CRISPR- 82.6 45 0.00097 31.6 13.7 23 257-279 248-270 (379)
406 KOG2114 Vacuolar assembly/sort 82.6 64 0.0014 33.4 15.5 109 292-411 342-453 (933)
407 PF12854 PPR_1: PPR repeat 81.9 4.6 0.0001 22.3 4.2 27 283-309 6-32 (34)
408 KOG4014 Uncharacterized conser 81.8 27 0.00058 28.5 13.8 189 248-486 32-233 (248)
409 cd02682 MIT_AAA_Arch MIT: doma 81.5 8 0.00017 26.2 5.8 26 477-502 33-58 (75)
410 PF09670 Cas_Cas02710: CRISPR- 81.4 50 0.0011 31.3 14.1 64 250-313 131-198 (379)
411 cd02681 MIT_calpain7_1 MIT: do 81.2 2.8 6.1E-05 28.5 3.7 29 2-30 6-34 (76)
412 COG5536 BET4 Protein prenyltra 81.0 28 0.00062 30.6 10.2 151 384-534 61-230 (328)
413 PF12854 PPR_1: PPR repeat 80.8 4.8 0.0001 22.2 4.0 27 35-61 6-32 (34)
414 KOG0276 Vesicle coat complex C 80.8 24 0.00052 34.7 10.7 68 345-417 623-694 (794)
415 KOG2561 Adaptor protein NUB1, 80.7 8.1 0.00017 36.0 7.3 98 1-98 162-295 (568)
416 PF11817 Foie-gras_1: Foie gra 80.6 5.5 0.00012 35.0 6.4 63 35-97 177-245 (247)
417 PF07219 HemY_N: HemY protein 80.2 8.3 0.00018 28.6 6.3 42 6-47 63-104 (108)
418 cd02683 MIT_1 MIT: domain cont 79.9 3 6.4E-05 28.6 3.5 29 2-30 6-34 (77)
419 PF04212 MIT: MIT (microtubule 79.4 3.7 8.1E-05 27.4 3.9 28 3-30 6-33 (69)
420 PF12739 TRAPPC-Trs85: ER-Golg 79.2 63 0.0014 31.1 15.0 96 4-99 210-329 (414)
421 KOG0686 COP9 signalosome, subu 79.0 18 0.00038 33.6 8.8 105 249-357 149-257 (466)
422 KOG4521 Nuclear pore complex, 77.9 1.1E+02 0.0024 33.2 14.8 187 284-488 920-1134(1480)
423 PF04097 Nic96: Nup93/Nic96; 77.2 91 0.002 31.9 20.2 82 10-98 266-355 (613)
424 PF13041 PPR_2: PPR repeat fam 77.1 13 0.00029 22.6 5.6 27 425-451 5-31 (50)
425 KOG4014 Uncharacterized conser 76.5 40 0.00088 27.5 14.7 59 465-525 176-238 (248)
426 KOG0686 COP9 signalosome, subu 76.3 19 0.0004 33.5 8.2 94 4-97 152-256 (466)
427 PF13041 PPR_2: PPR repeat fam 76.2 15 0.00032 22.4 5.9 28 37-64 4-31 (50)
428 COG5187 RPN7 26S proteasome re 75.7 58 0.0013 28.9 15.0 143 387-535 113-265 (412)
429 COG4941 Predicted RNA polymera 75.4 23 0.00049 32.0 8.3 95 17-112 311-407 (415)
430 PF11846 DUF3366: Domain of un 75.1 11 0.00024 31.6 6.4 46 442-488 130-175 (193)
431 PHA02537 M terminase endonucle 74.7 12 0.00025 32.1 6.3 109 396-505 90-225 (230)
432 PRK11619 lytic murein transgly 74.7 1.1E+02 0.0023 31.6 32.1 56 426-483 410-465 (644)
433 KOG4279 Serine/threonine prote 74.1 29 0.00063 35.1 9.4 189 283-500 200-409 (1226)
434 PF04840 Vps16_C: Vps16, C-ter 73.7 74 0.0016 29.3 20.1 76 399-482 187-262 (319)
435 cd02680 MIT_calpain7_2 MIT: do 73.5 5 0.00011 27.2 3.1 26 5-30 9-34 (75)
436 PF09205 DUF1955: Domain of un 72.3 37 0.0008 26.1 7.6 55 258-312 94-148 (161)
437 KOG0567 HEAT repeat-containing 72.1 68 0.0015 28.1 15.2 95 248-357 167-261 (289)
438 cd02678 MIT_VPS4 MIT: domain c 71.3 7.4 0.00016 26.5 3.7 28 3-30 7-34 (75)
439 PF13226 DUF4034: Domain of un 70.7 50 0.0011 29.4 9.4 113 8-120 6-149 (277)
440 PF01535 PPR: PPR repeat; Int 70.6 8.5 0.00018 20.1 3.3 21 42-62 6-26 (31)
441 KOG2063 Vacuolar assembly/sort 70.0 1.6E+02 0.0034 31.4 19.1 40 56-99 494-533 (877)
442 PF13226 DUF4034: Domain of un 69.6 83 0.0018 28.1 10.9 34 473-506 115-148 (277)
443 KOG2561 Adaptor protein NUB1, 69.6 77 0.0017 30.0 10.5 112 322-452 160-296 (568)
444 smart00745 MIT Microtubule Int 69.5 8.3 0.00018 26.4 3.7 25 5-29 11-35 (77)
445 PF07219 HemY_N: HemY protein 69.2 43 0.00093 24.8 7.7 56 244-299 53-108 (108)
446 KOG4279 Serine/threonine prote 68.8 70 0.0015 32.6 10.7 72 48-120 255-336 (1226)
447 cd02684 MIT_2 MIT: domain cont 67.9 9.1 0.0002 26.1 3.5 27 4-30 8-34 (75)
448 cd02656 MIT MIT: domain contai 67.0 10 0.00022 25.8 3.7 27 4-30 8-34 (75)
449 TIGR02710 CRISPR-associated pr 66.7 78 0.0017 29.8 10.2 56 6-61 134-196 (380)
450 KOG0128 RNA-binding protein SA 65.9 1.7E+02 0.0038 30.4 33.7 102 16-118 93-197 (881)
451 PF10952 DUF2753: Protein of u 65.7 45 0.00098 25.2 6.8 69 253-321 4-91 (140)
452 TIGR00756 PPR pentatricopeptid 65.5 13 0.00027 20.0 3.4 25 426-450 3-27 (35)
453 PF00244 14-3-3: 14-3-3 protei 64.1 99 0.0022 27.0 15.7 62 253-314 4-67 (236)
454 cd02677 MIT_SNX15 MIT: domain 63.8 11 0.00023 25.7 3.2 27 4-30 8-34 (75)
455 PF09797 NatB_MDM20: N-acetylt 63.6 43 0.00094 31.6 8.4 48 263-310 196-243 (365)
456 PF02064 MAS20: MAS20 protein 63.5 18 0.00039 27.4 4.6 28 7-34 68-95 (121)
457 smart00299 CLH Clathrin heavy 62.9 71 0.0015 24.9 14.1 114 371-502 23-136 (140)
458 KOG1497 COP9 signalosome, subu 62.7 61 0.0013 29.2 8.2 110 284-417 103-212 (399)
459 PF11846 DUF3366: Domain of un 62.3 27 0.00059 29.3 6.2 51 52-103 127-177 (193)
460 COG2015 Alkyl sulfatase and re 62.2 18 0.0004 34.3 5.3 51 3-53 453-503 (655)
461 PHA02537 M terminase endonucle 62.1 26 0.00057 30.1 5.9 112 259-373 92-222 (230)
462 PF10952 DUF2753: Protein of u 62.0 37 0.0008 25.6 5.8 28 4-31 3-30 (140)
463 PF09477 Type_III_YscG: Bacter 61.7 62 0.0013 23.8 8.9 84 394-482 11-94 (116)
464 PF02064 MAS20: MAS20 protein 61.2 19 0.00041 27.3 4.4 37 461-497 67-103 (121)
465 PF08311 Mad3_BUB1_I: Mad3/BUB 60.6 75 0.0016 24.4 14.1 33 384-416 94-126 (126)
466 PF04212 MIT: MIT (microtubule 60.4 29 0.00062 23.1 4.9 24 253-276 8-31 (69)
467 KOG3807 Predicted membrane pro 59.8 1.4E+02 0.003 27.2 20.4 31 285-315 276-306 (556)
468 PF01239 PPTA: Protein prenylt 58.6 27 0.00058 18.6 4.1 26 478-503 4-29 (31)
469 PF03745 DUF309: Domain of unk 58.4 49 0.0011 21.5 7.2 53 6-58 3-61 (62)
470 smart00671 SEL1 Sel1-like repe 57.9 28 0.00061 18.9 3.9 13 17-29 20-32 (36)
471 KOG0276 Vesicle coat complex C 57.8 53 0.0012 32.5 7.6 70 433-507 647-724 (794)
472 KOG4563 Cell cycle-regulated h 57.1 21 0.00045 32.7 4.6 54 3-56 42-103 (400)
473 PF02184 HAT: HAT (Half-A-TPR) 56.4 30 0.00064 18.9 3.4 14 53-66 4-17 (32)
474 PF09797 NatB_MDM20: N-acetylt 56.3 64 0.0014 30.5 8.2 45 371-415 199-243 (365)
475 PRK15490 Vi polysaccharide bio 56.2 90 0.002 31.2 9.1 82 12-95 18-99 (578)
476 cd02681 MIT_calpain7_1 MIT: do 55.7 38 0.00082 23.1 4.7 26 252-277 8-33 (76)
477 PF12583 TPPII_N: Tripeptidyl 55.6 79 0.0017 24.2 6.6 49 247-295 73-121 (139)
478 cd02679 MIT_spastin MIT: domai 54.8 21 0.00046 24.6 3.4 17 16-32 3-19 (79)
479 PF13812 PPR_3: Pentatricopept 54.3 33 0.00071 18.3 4.2 27 286-312 3-29 (34)
480 PF04010 DUF357: Protein of un 52.2 19 0.00041 24.5 2.9 26 1-26 34-59 (75)
481 PF12753 Nro1: Nuclear pore co 51.7 25 0.00054 32.7 4.4 46 52-99 334-391 (404)
482 PF12583 TPPII_N: Tripeptidyl 51.5 55 0.0012 25.0 5.3 39 44-82 84-122 (139)
483 PF05053 Menin: Menin; InterP 51.5 2.5E+02 0.0055 27.9 10.9 45 440-484 296-345 (618)
484 COG1849 Uncharacterized protei 50.3 23 0.00049 24.8 3.0 26 1-26 40-65 (90)
485 TIGR02710 CRISPR-associated pr 50.1 2.3E+02 0.005 26.8 14.2 19 400-418 257-275 (380)
486 KOG1920 IkappaB kinase complex 50.0 3.9E+02 0.0085 29.5 18.0 157 262-448 892-1051(1265)
487 COG5187 RPN7 26S proteasome re 49.9 1.9E+02 0.0042 25.9 12.5 64 290-358 81-144 (412)
488 PF12753 Nro1: Nuclear pore co 49.9 35 0.00077 31.8 5.0 56 300-357 334-390 (404)
489 PRK15490 Vi polysaccharide bio 47.7 2.4E+02 0.0053 28.4 10.5 75 405-481 24-98 (578)
490 PF08238 Sel1: Sel1 repeat; I 47.4 40 0.00086 18.8 3.5 12 52-63 24-35 (39)
491 COG3014 Uncharacterized protei 47.1 2.3E+02 0.0051 26.0 13.5 179 21-291 40-254 (449)
492 KOG1920 IkappaB kinase complex 45.7 4.6E+02 0.0099 29.0 15.1 55 396-450 959-1026(1265)
493 cd00280 TRFH Telomeric Repeat 45.7 1.7E+02 0.0038 24.2 8.7 42 395-437 117-158 (200)
494 PF06957 COPI_C: Coatomer (COP 44.1 77 0.0017 30.3 6.4 102 5-106 207-336 (422)
495 KOG0567 HEAT repeat-containing 43.9 2.3E+02 0.005 25.1 16.0 203 259-484 58-260 (289)
496 COG4259 Uncharacterized protei 43.7 1.2E+02 0.0027 21.9 6.2 38 457-494 72-109 (121)
497 TIGR00985 3a0801s04tom mitocho 43.5 1.7E+02 0.0036 23.3 7.1 46 316-365 81-127 (148)
498 PF13934 ELYS: Nuclear pore co 43.3 2.2E+02 0.0048 24.6 9.2 85 6-96 82-166 (226)
499 PF04348 LppC: LppC putative l 42.4 8.3 0.00018 38.4 0.0 169 2-284 24-199 (536)
500 PF15469 Sec5: Exocyst complex 42.1 1.5E+02 0.0033 24.4 7.5 84 10-110 94-179 (182)
No 1
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=5.9e-49 Score=351.97 Aligned_cols=436 Identities=18% Similarity=0.210 Sum_probs=385.3
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHhccCCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHHHHHhhc
Q 009278 4 EAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGL 83 (538)
Q Consensus 4 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 83 (538)
...++|-..++.|+|.+|.+....+...+|.+.+.+..++.++++..+++.....-..+++.+|...++|..+|.++...
T Consensus 50 ~~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~ker 129 (966)
T KOG4626|consen 50 DRLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKER 129 (966)
T ss_pred hHHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHh
Confidence 45678889999999999999999999999999998999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHhhhhcCCCcHHHHhhHHHHHHHHhhcccCCCCCCCCcccccccCCchhhcccCCCCCCCcccHHHHHHH
Q 009278 84 QDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRNM 163 (538)
Q Consensus 84 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (538)
|++++|+..|+.++++.|+..++|..++.++...|+. ..++..+
T Consensus 130 g~~~~al~~y~~aiel~p~fida~inla~al~~~~~~------------------------------------~~a~~~~ 173 (966)
T KOG4626|consen 130 GQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDL------------------------------------ELAVQCF 173 (966)
T ss_pred chHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCC------------------------------------cccHHHH
Confidence 9999999999999999999999999999998888765 4567788
Q ss_pred HHhhhcCCCchhhhhchHHHHHHHHHHHhhhcCCCCCCCccccccccCCCCCCCccccccCCCCCCCCCCccccHHHHHH
Q 009278 164 MKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKEA 243 (538)
Q Consensus 164 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (538)
..+++.+|.........+.+.++.|.+.... ....+++
T Consensus 174 ~~alqlnP~l~ca~s~lgnLlka~Grl~ea~------------------------------------------~cYlkAi 211 (966)
T KOG4626|consen 174 FEALQLNPDLYCARSDLGNLLKAEGRLEEAK------------------------------------------ACYLKAI 211 (966)
T ss_pred HHHHhcCcchhhhhcchhHHHHhhcccchhH------------------------------------------HHHHHHH
Confidence 8889999988888888888888877664333 4566677
Q ss_pred HHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHH
Q 009278 244 KERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKM 323 (538)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 323 (538)
...|.-+.+|.++|.++..+|+...|+..|++++.++|+..++++++|.+|...+.+++|+.+|.+++...|++
T Consensus 212 ~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~------ 285 (966)
T KOG4626|consen 212 ETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNH------ 285 (966)
T ss_pred hhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcc------
Confidence 77778888899999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCC--------hhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHH
Q 009278 324 IARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRN--------PDTLKKLNEAEKAKKELEQQEIFDPKIADEEREK 395 (538)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 395 (538)
+.++-+++.+|.+.|. .+-|+..|++++...|+ +..+...|+..+|..+|.+++...|+.+++.+++
T Consensus 286 -A~a~gNla~iYyeqG~----ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NL 360 (966)
T KOG4626|consen 286 -AVAHGNLACIYYEQGL----LDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNL 360 (966)
T ss_pred -hhhccceEEEEecccc----HHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHH
Confidence 7888888888888888 99999999999998887 3466778899999999999999999999999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCchHHHHHHHHHHHHccCHHH
Q 009278 396 GNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDK 475 (538)
Q Consensus 396 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 475 (538)
|.++..+|.+++|..+|.++++..|+...+..++|.+|.++|++++|+.+|+.++.+.|..++++.++|..|..+|+...
T Consensus 361 gni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~ 440 (966)
T KOG4626|consen 361 GNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSA 440 (966)
T ss_pred HHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhccCCCChHHHHHHHHhccC-Cchhhhhcc
Q 009278 476 ALETYQEGLKHDPQNQELLDGVRRCVQQINKAGRGELSPEELKERQAKGMQ-DPKFRTYSL 535 (538)
Q Consensus 476 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~p~~~~~~~ 535 (538)
|+.+|.+|+.++|...+++.+|+.++...|+..+|. ..++.++. +|++.++.-
T Consensus 441 A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI-------~sY~~aLklkPDfpdA~c 494 (966)
T KOG4626|consen 441 AIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAI-------QSYRTALKLKPDFPDAYC 494 (966)
T ss_pred HHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHH-------HHHHHHHccCCCCchhhh
Confidence 999999999999999999999999999888887776 66777776 787776543
No 2
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.2e-46 Score=329.30 Aligned_cols=499 Identities=54% Similarity=0.805 Sum_probs=443.9
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHHHHhccCCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHHHHH
Q 009278 1 MADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAH 80 (538)
Q Consensus 1 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 80 (538)
|++.+..+|+..+..|+|+.|+..|.+++.++|.+...+.++..+|..+|+|++|++.-.+.++++|+++.+|.++|..+
T Consensus 1 ~a~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~ 80 (539)
T KOG0548|consen 1 KAVELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAAL 80 (539)
T ss_pred ChhHHHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCHHHHHHHHHhhhhcCCCcHHHHhhHHHHHHHHhhcccCCCCCCCCcccccccCCchhhcccCCCCCCCcccHHHH
Q 009278 81 LGLQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDF 160 (538)
Q Consensus 81 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (538)
.-+|+|++|+..|.+.++.+|+|......++.++... . .....+..+.++..+..+|.....+.+..+
T Consensus 81 ~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~--~----------~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~ 148 (539)
T KOG0548|consen 81 FGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLED--Y----------AADQLFTKPYFHEKLANLPLTNYSLSDPAY 148 (539)
T ss_pred HhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHH--H----------HhhhhccCcHHHHHhhcChhhhhhhccHHH
Confidence 9999999999999999999999999999999988222 1 126778899999999999999999999999
Q ss_pred HHHHHhhhcCCCchhhhhchHHHHHHHHHHHhhhcCCCCCCCccccccccCCCCCCCccccccCCCCCCCCCCccccHHH
Q 009278 161 RNMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEE 240 (538)
Q Consensus 161 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (538)
......+..+|.++..+++.+++....+.+.+..............+-..-+. .+...+.....-.
T Consensus 149 ~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~--------------~~~~~~~~~~~d~ 214 (539)
T KOG0548|consen 149 VKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPC--------------KQEHNGFPIIEDN 214 (539)
T ss_pred HHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcc--------------cccCCCCCccchh
Confidence 99999999999999999999999999999988775532221111111111110 1112222222233
Q ss_pred HHHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhh
Q 009278 241 KEAKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSD 320 (538)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 320 (538)
.........+.....+|...+...++..|++.|..+++++ .+...+.+.+-+|+..|.+.+++..+..+++........
T Consensus 215 ~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad 293 (539)
T KOG0548|consen 215 TEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRAD 293 (539)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHH
Confidence 3334466677888899999999999999999999999999 889999999999999999999999999999988888888
Q ss_pred HHHHHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHH
Q 009278 321 FKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFF 400 (538)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~ 400 (538)
+..++.++..+|..+...++ ++.++.+|.+++..+..++++..+...++++...+...-++|.....-...|..++
T Consensus 294 ~klIak~~~r~g~a~~k~~~----~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~F 369 (539)
T KOG0548|consen 294 YKLIAKALARLGNAYTKRED----YEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAF 369 (539)
T ss_pred HHHHHHHHHHhhhhhhhHHh----HHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHH
Confidence 88889999999999999999 99999999999999999999999999999999999999999999888899999999
Q ss_pred hcCChHHHHHHHHHHHhcCCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCchHHHHHHHHHHHHccCHHHHHHHH
Q 009278 401 KQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETY 480 (538)
Q Consensus 401 ~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 480 (538)
..|+|..|+..|.++|..+|+++.+|.+.|.||..+|.+..|+...+.+++++|+...+|+..|.++..+.+|++|.+.|
T Consensus 370 k~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay 449 (539)
T KOG0548|consen 370 KKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAY 449 (539)
T ss_pred hccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCCCCHHHHHHHHHHHHHhhhhccCCCChHHHHHHHHhccCCchhhhhcccC
Q 009278 481 QEGLKHDPQNQELLDGVRRCVQQINKAGRGELSPEELKERQAKGMQDPKFRTYSLTQ 537 (538)
Q Consensus 481 ~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~~~~~~ 537 (538)
.++++.+|++.++...+.+|...+...... .+..++++.||+++.++.|+
T Consensus 450 ~eale~dp~~~e~~~~~~rc~~a~~~~~~~-------ee~~~r~~~dpev~~il~d~ 499 (539)
T KOG0548|consen 450 QEALELDPSNAEAIDGYRRCVEAQRGDETP-------EETKRRAMADPEVQAILQDP 499 (539)
T ss_pred HHHHhcCchhHHHHHHHHHHHHHhhcCCCH-------HHHHHhhccCHHHHHHHcCH
Confidence 999999999999999999999887322222 47777788999999998874
No 3
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=3.7e-48 Score=346.93 Aligned_cols=400 Identities=21% Similarity=0.255 Sum_probs=292.9
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHHHhccCCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHHHHHh
Q 009278 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHL 81 (538)
Q Consensus 2 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 81 (538)
+++|-+.|+++-..|++++|+..|+.++++.|+..++|.++|.++...|+.+.|..+|..+++++|+...+...+|.++.
T Consensus 116 ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlk 195 (966)
T KOG4626|consen 116 AEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLK 195 (966)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHH
Confidence 56666777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred hccCHHHHHHHHHhhhhcCCCcHHHHhhHHHHHHHHhhcccCCCCCCCCcccccccCCchhhcccCCCCCCCcccHHHHH
Q 009278 82 GLQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFR 161 (538)
Q Consensus 82 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (538)
..|+..+|..+|.++++..|.-..+|..|+.++...|+. ..++.
T Consensus 196 a~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei------------------------------------~~aiq 239 (966)
T KOG4626|consen 196 AEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEI------------------------------------WLAIQ 239 (966)
T ss_pred hhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchH------------------------------------HHHHH
Confidence 777777777777777777777777777777776666554 34555
Q ss_pred HHHHhhhcCCCchhhhhchHHHHHHHHHHHhhhcCCCCCCCccccccccCCCCCCCccccccCCCCCCCCCCccccHHHH
Q 009278 162 NMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEK 241 (538)
Q Consensus 162 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (538)
.+.+++..+|+.+.+|
T Consensus 240 ~y~eAvkldP~f~dAY---------------------------------------------------------------- 255 (966)
T KOG4626|consen 240 HYEEAVKLDPNFLDAY---------------------------------------------------------------- 255 (966)
T ss_pred HHHHhhcCCCcchHHH----------------------------------------------------------------
Confidence 5556666666655555
Q ss_pred HHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhH
Q 009278 242 EAKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDF 321 (538)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 321 (538)
+++|.+|...+.|+.|+.+|.+++...|++..++.++|.+|..+|..+-|+..|++++++.|+.
T Consensus 256 ------------iNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F---- 319 (966)
T KOG4626|consen 256 ------------INLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNF---- 319 (966)
T ss_pred ------------hhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCc----
Confidence 4555555555555555555555555555555555555555555555555555555555555554
Q ss_pred HHHHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCC--------hhHHHhhhhHHHHHHHHHHHHHcCCCchHHHH
Q 009278 322 KMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRN--------PDTLKKLNEAEKAKKELEQQEIFDPKIADEER 393 (538)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 393 (538)
..++.+++..+-..|+ ..+|..+|++++...|+ +.++...+.++.|...|.++++..|..+.++.
T Consensus 320 ---~~Ay~NlanALkd~G~----V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~n 392 (966)
T KOG4626|consen 320 ---PDAYNNLANALKDKGS----VTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHN 392 (966)
T ss_pred ---hHHHhHHHHHHHhccc----hHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhh
Confidence 2333333333333333 55555555555554443 12344444555555555555559999999999
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCchHHHHHHHHHHHHccCH
Q 009278 394 EKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEY 473 (538)
Q Consensus 394 ~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 473 (538)
++|.+|..+|++++|+.+|+.++.+.|..++++.++|..|..+|+.+.|+.+|.+++..+|..++++.+||.+|...|+.
T Consensus 393 NLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni 472 (966)
T KOG4626|consen 393 NLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNI 472 (966)
T ss_pred hHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhccCCCChHHHHHHHHhc
Q 009278 474 DKALETYQEGLKHDPQNQELLDGVRRCVQQINKAGRGELSPEELKERQAKG 524 (538)
Q Consensus 474 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 524 (538)
.+|+..|+.++++.|+.+++..++..++.-..++..-...+.++.+..+..
T Consensus 473 ~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D~d~~~~kl~sivrdq 523 (966)
T KOG4626|consen 473 PEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTDYDKRMKKLVSIVRDQ 523 (966)
T ss_pred HHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccchHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998888876554555555555443
No 4
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=100.00 E-value=4.6e-39 Score=320.47 Aligned_cols=429 Identities=20% Similarity=0.248 Sum_probs=242.5
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHHHhccCCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHHHHHh
Q 009278 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHL 81 (538)
Q Consensus 2 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 81 (538)
|..+..+|..++..|+|++|+..|++++...|+ +..+.++|.||..+|++++|+..+++++.++|++..+++.+|.+|.
T Consensus 127 a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 127 AAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 467889999999999999999999999999996 7899999999999999999999999999999999999999999999
Q ss_pred hccCHHHHHHHHHhhhhcCCCcHHHHhhHHHHHHHHhhcccCCCCCCCCcccccccCCchhhcccCCCCCCCcccHHHHH
Q 009278 82 GLQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFR 161 (538)
Q Consensus 82 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (538)
.+|++++|+..|..+...++.+......+...... .....
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----------------------------------------~~a~~ 245 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLK----------------------------------------KFAES 245 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----------------------------------------HHHHH
Confidence 99999999999998887766554322111111000 11222
Q ss_pred HHHHhhhcCCCchhhhhchHHHHHHHHHHHhhhcCCCCCCCccccccccCCCCCCCcccc-ccCC-CCCCCCCCccccHH
Q 009278 162 NMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEE-TRKP-ESEPEPEPMELTEE 239 (538)
Q Consensus 162 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~ 239 (538)
.....+...|.+...+...+.+...+.... ....+.......+......... .... .........++..+
T Consensus 246 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~ 317 (615)
T TIGR00990 246 KAKEILETKPENLPSVTFVGNYLQSFRPKP--------RPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAF 317 (615)
T ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHccCCc--------chhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHH
Confidence 333344444444333332222221110000 0000000000000000000000 0000 00000011222222
Q ss_pred HHHHHH---hHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcccc
Q 009278 240 EKEAKE---RKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRE 316 (538)
Q Consensus 240 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 316 (538)
...+.. .|..+.++..+|.++...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..|+++++.+|+
T Consensus 318 ~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~ 397 (615)
T TIGR00990 318 EKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSE 397 (615)
T ss_pred HHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 222322 35556666677777777777777777777777777777777777777777777777777777777777666
Q ss_pred chhhHHHHHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCCh--------hHHHhhhhHHHHHHHHHHHHHcCCCc
Q 009278 317 LRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNP--------DTLKKLNEAEKAKKELEQQEIFDPKI 388 (538)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~~~~ 388 (538)
+ ..++..+|.++...|+ +++|+..|++++...|+. .++..+|++++|+..+++++...|.+
T Consensus 398 ~-------~~~~~~lg~~~~~~g~----~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~ 466 (615)
T TIGR00990 398 D-------PDIYYHRAQLHFIKGE----FAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEA 466 (615)
T ss_pred C-------HHHHHHHHHHHHHcCC----HHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 6 4455556666666666 777777777777654431 12334444555555555555555555
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhH------hHHHHH-HHHhCCchhHHHHHHHHHhcCCCchHHHH
Q 009278 389 ADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTY------SNRAAC-YTKLGAMPEGLKDADKCIELDPTFSKGYT 461 (538)
Q Consensus 389 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~------~~la~~-~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 461 (538)
+.++..+|.++...|++++|+..|++++.+.|.+...+ ...+.. +...|++++|+.++++++.++|++..++.
T Consensus 467 ~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~ 546 (615)
T TIGR00990 467 PDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVA 546 (615)
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 55555555555555555555555555555544322211 111111 22234555555555555555555444455
Q ss_pred HHHHHHHHccCHHHHHHHHHHHhccCCCC
Q 009278 462 RKGAIQFFLKEYDKALETYQEGLKHDPQN 490 (538)
Q Consensus 462 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 490 (538)
.+|.++..+|++++|+.+|++++++.+..
T Consensus 547 ~la~~~~~~g~~~eAi~~~e~A~~l~~~~ 575 (615)
T TIGR00990 547 TMAQLLLQQGDVDEALKLFERAAELARTE 575 (615)
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHhccH
Confidence 55555555555555555555555544443
No 5
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=2.5e-37 Score=328.19 Aligned_cols=453 Identities=19% Similarity=0.199 Sum_probs=327.7
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHhccCCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHHHHHhhc
Q 009278 4 EAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGL 83 (538)
Q Consensus 4 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 83 (538)
.....+..+...|++++|+..+++.+...|.++.++..+|.++...|++++|+..|++++..+|++..++..+|.++...
T Consensus 433 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~ 512 (899)
T TIGR02917 433 ADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQE 512 (899)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHC
Confidence 34556667777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred cCHHHHHHHHHhhhhcCCCcHHHHhhHHHHHHHHhhcccCCCCCCCCccccccc-CCc---hhhcccCCCCCCCcccHHH
Q 009278 84 QDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFA-GPE---MWAKLTADPTTRSYLDQDD 159 (538)
Q Consensus 84 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~ 159 (538)
|++++|+..|++++...|++..++..++.++...|+...+.. .+..... .+. ....+ ............+
T Consensus 513 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~-----~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~A 586 (899)
T TIGR02917 513 GNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVA-----WLEKAAELNPQEIEPALAL-AQYYLGKGQLKKA 586 (899)
T ss_pred CCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHH-----HHHHHHHhCccchhHHHHH-HHHHHHCCCHHHH
Confidence 777777777777777777777777777777766655421110 0000000 000 00000 0000000001233
Q ss_pred HHHHHHhhhcCCCchhhhhchHHHHHHHHHHHhhhcCCCCCCCccccccccCCCCCCCccccccCCCCCCCCCCccccHH
Q 009278 160 FRNMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEE 239 (538)
Q Consensus 160 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (538)
...+.+.+...|.+...+...+..+...+.+ ..++...
T Consensus 587 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~------------------------------------------~~A~~~~ 624 (899)
T TIGR02917 587 LAILNEAADAAPDSPEAWLMLGRAQLAAGDL------------------------------------------NKAVSSF 624 (899)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHcCCH------------------------------------------HHHHHHH
Confidence 3333344444455444444333333322221 1222333
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchh
Q 009278 240 EKEAKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRS 319 (538)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 319 (538)
.......|..+..+..+|.++...|++++|+..|+++++.+|++..++..++.++...|++++|+..++.+....|.+
T Consensus 625 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-- 702 (899)
T TIGR02917 625 KKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKA-- 702 (899)
T ss_pred HHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCC--
Confidence 334444455566666777777777777777777777777777777777777777777777777777777777666665
Q ss_pred hHHHHHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCChh-------HHHhhhhHHHHHHHHHHHHHcCCCchHHH
Q 009278 320 DFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPD-------TLKKLNEAEKAKKELEQQEIFDPKIADEE 392 (538)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 392 (538)
...+..+|.++...++ +++|+..|++++...|+.. .+...|++++|...+.+.+...|+++.++
T Consensus 703 -----~~~~~~~~~~~~~~g~----~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~ 773 (899)
T TIGR02917 703 -----ALGFELEGDLYLRQKD----YPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLR 773 (899)
T ss_pred -----hHHHHHHHHHHHHCCC----HHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 3455566777777777 9999999999999887753 45677899999999999999999999999
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCchHHHHHHHHHHHHccC
Q 009278 393 REKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKE 472 (538)
Q Consensus 393 ~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 472 (538)
..+|.++...|++++|+..|+++++..|+++.++..+|.++...|+ .+|+.++++++...|+++..+..+|.++...|+
T Consensus 774 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 852 (899)
T TIGR02917 774 TALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGE 852 (899)
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999999999999999999 889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhccCCCChHH
Q 009278 473 YDKALETYQEGLKHDPQNQELLDGVRRCVQQINKAGRGELSPEE 516 (538)
Q Consensus 473 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 516 (538)
+++|+.+|+++++.+|.++.++..++.++...|+.++|...+++
T Consensus 853 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 896 (899)
T TIGR02917 853 ADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDK 896 (899)
T ss_pred HHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999988855443
No 6
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=4.1e-36 Score=318.89 Aligned_cols=455 Identities=19% Similarity=0.168 Sum_probs=352.5
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHHHhccCCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHHHHHh
Q 009278 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHL 81 (538)
Q Consensus 2 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 81 (538)
+..+..+|..+...|++++|+..|++++..+|....+...++.++...|++++|+..+++.+...|+++..+..+|.++.
T Consensus 397 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 476 (899)
T TIGR02917 397 AAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYL 476 (899)
T ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCHHHHHHHHHhhhhcCCCcHHHHhhHHHHHHHHhhcccCCCCCCCCcccccccCCchhhcccCCCCCCCcccHHHHH
Q 009278 82 GLQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFR 161 (538)
Q Consensus 82 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (538)
..|++++|+..|+++++.+|++..++..++.++...|+.. .+..
T Consensus 477 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~------------------------------------~A~~ 520 (899)
T TIGR02917 477 GKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPD------------------------------------DAIQ 520 (899)
T ss_pred hCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHH------------------------------------HHHH
Confidence 9999999999999999999999999999999998887652 3333
Q ss_pred HHHHhhhcCCCchhhhhchHHHHHHHHHHHhhhcCCCCCCCccccccccCCCCCCCccccccCCCCCCCCCCccccHHHH
Q 009278 162 NMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEK 241 (538)
Q Consensus 162 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (538)
.+.+.+...|.+...+...+.+....+......... ..++...+........ ....-........++.....
T Consensus 521 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~-------~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~A~~~~~~ 592 (899)
T TIGR02917 521 RFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWL-------EKAAELNPQEIEPALA-LAQYYLGKGQLKKALAILNE 592 (899)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHH-------HHHHHhCccchhHHHH-HHHHHHHCCCHHHHHHHHHH
Confidence 444444444444444333332222211111000000 0000000000000000 00000000011222233344
Q ss_pred HHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhH
Q 009278 242 EAKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDF 321 (538)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 321 (538)
.....|.....+..+|.++...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..++++++..|++
T Consensus 593 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---- 668 (899)
T TIGR02917 593 AADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDN---- 668 (899)
T ss_pred HHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----
Confidence 4444556677888888888888888888888888888888888888888888888888888888888888888887
Q ss_pred HHHHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCCh--------hHHHhhhhHHHHHHHHHHHHHcCCCchHHHH
Q 009278 322 KMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNP--------DTLKKLNEAEKAKKELEQQEIFDPKIADEER 393 (538)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 393 (538)
..++..++.++...++ +++|+..++.+....|.. .++...|++++|+..+.+++...|+. ..+.
T Consensus 669 ---~~~~~~l~~~~~~~~~----~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~ 740 (899)
T TIGR02917 669 ---TEAQIGLAQLLLAAKR----TESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS-QNAI 740 (899)
T ss_pred ---HHHHHHHHHHHHHcCC----HHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc-hHHH
Confidence 4455666666666666 888888888888776653 24567788999999999999988887 6778
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCchHHHHHHHHHHHHccCH
Q 009278 394 EKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEY 473 (538)
Q Consensus 394 ~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 473 (538)
.++.++...|++++|+..++++++..|+++.+++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|+
T Consensus 741 ~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~- 819 (899)
T TIGR02917 741 KLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD- 819 (899)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-
Confidence 8899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhccCCCC
Q 009278 474 DKALETYQEGLKHDPQNQELLDGVRRCVQQINKAGRGELS 513 (538)
Q Consensus 474 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~ 513 (538)
.+|+.++++++.+.|+++.++..++.++...|++++|...
T Consensus 820 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 859 (899)
T TIGR02917 820 PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPL 859 (899)
T ss_pred HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHH
Confidence 8899999999999999999999999999999998888744
No 7
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=3.3e-36 Score=318.78 Aligned_cols=428 Identities=15% Similarity=0.119 Sum_probs=352.0
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHhccCCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchH--------------H
Q 009278 7 AKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSK--------------G 72 (538)
Q Consensus 7 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~--------------~ 72 (538)
.+|..++..|++++|+..|++++..+|+++.++..+|.++...|++++|+..|+++++.+|++.. .
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~ 353 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWL 353 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHH
Confidence 45889999999999999999999999999999999999999999999999999999999998653 2
Q ss_pred HHHHHHHHhhccCHHHHHHHHHhhhhcCCCcHHHHhhHHHHHHHHhhcccCCCCCCCCcccccccCCchhhcccCCCCCC
Q 009278 73 YSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTR 152 (538)
Q Consensus 73 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (538)
...+|.++...|++++|+..|++++..+|++..++..++.++...|+.
T Consensus 354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~-------------------------------- 401 (1157)
T PRK11447 354 LIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDY-------------------------------- 401 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH--------------------------------
Confidence 245688899999999999999999999999999999999999998876
Q ss_pred CcccHHHHHHHHHhhhcCCCchhhhhchHHHHHHHHHHHhhhcCCCCCCCccccccccCCCCCCCccccccCCCCCCCCC
Q 009278 153 SYLDQDDFRNMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPE 232 (538)
Q Consensus 153 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (538)
..+...+.+.+..+|.+...+...+.++.... . +.++..+...+..
T Consensus 402 ----~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~-~--------------~~A~~~l~~l~~~--------------- 447 (1157)
T PRK11447 402 ----AAAERYYQQALRMDPGNTNAVRGLANLYRQQS-P--------------EKALAFIASLSAS--------------- 447 (1157)
T ss_pred ----HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC-H--------------HHHHHHHHhCCHH---------------
Confidence 67778888899999998776654444332110 0 0000000000000
Q ss_pred CccccHHHHHHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 009278 233 PMELTEEEKEAKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVE 312 (538)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 312 (538)
................+..+|..+...|++++|+..|+++++.+|+++.+++.+|.+|...|++++|+..+++++.
T Consensus 448 ----~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~ 523 (1157)
T PRK11447 448 ----QRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQ 523 (1157)
T ss_pred ----HHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 0000000011122345778899999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchhhHHHHHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCC------------------hhHHHhhhhHHHH
Q 009278 313 RGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRN------------------PDTLKKLNEAEKA 374 (538)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~------------------~~~~~~~~~~~~a 374 (538)
..|+++ ..++..+..+...++ +++|+..++++.....+ ...+...|++++|
T Consensus 524 ~~P~~~-------~~~~a~al~l~~~~~----~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA 592 (1157)
T PRK11447 524 QKPNDP-------EQVYAYGLYLSGSDR----DRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEA 592 (1157)
T ss_pred cCCCCH-------HHHHHHHHHHHhCCC----HHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHH
Confidence 999884 445556666666666 99999988876432211 2245667888889
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhcCC
Q 009278 375 KKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDP 454 (538)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 454 (538)
+..++ ..|.++..+..+|.++...|++++|+..|+++++.+|+++.++..++.++...|++++|+..++++++..|
T Consensus 593 ~~~l~----~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p 668 (1157)
T PRK11447 593 EALLR----QQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATAN 668 (1157)
T ss_pred HHHHH----hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCC
Confidence 88876 58999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHHHccCHHHHHHHHHHHhccCCCCH------HHHHHHHHHHHHhhhhccCCCChHHHHH
Q 009278 455 TFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQ------ELLDGVRRCVQQINKAGRGELSPEELKE 519 (538)
Q Consensus 455 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 519 (538)
+++.++..+|.++...|++++|+..|++++...|+++ .++..++.++...|+.++|...++++..
T Consensus 669 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 669 DSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999877654 4666789999999999999877666654
No 8
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.8e-36 Score=261.64 Aligned_cols=434 Identities=21% Similarity=0.284 Sum_probs=282.8
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHHHhccCCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHHHHHh
Q 009278 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHL 81 (538)
Q Consensus 2 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 81 (538)
|.++..+|+.+|+.|+|++||++|+.||+..|+.+..|.+++-||...|+|++.++.+.++++++|+.+.++++++..+.
T Consensus 115 A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 115 AAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHE 194 (606)
T ss_pred HHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCHHHHHHHHHhhhhc-CCCcHHHHhhHHHHHHHHhhcccCCCCCCCCcccccccCCc----hhhcccCCCCC----C
Q 009278 82 GLQDYIEAVNSYKKGLDI-DPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPE----MWAKLTADPTT----R 152 (538)
Q Consensus 82 ~~~~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~----~ 152 (538)
.+|++.+|+....-..-. .-++......+-+++...+......... ......++... ++.....++.. .
T Consensus 195 ~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k--~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~ 272 (606)
T KOG0547|consen 195 QLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLK--ENRPPVLPSATFIASYFGSFHADPKPLFDNK 272 (606)
T ss_pred hhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhc--ccCCCCCCcHHHHHHHHhhccccccccccCC
Confidence 999999998876543221 1222223333333333333321100000 00000000000 01111111111 1
Q ss_pred CcccHHHHHHHHHhhhcCCCchhhhhchHHHHHHHHHHHhhhcCCCCCCCccccccccCCCCCCCccccccCCCCCCCCC
Q 009278 153 SYLDQDDFRNMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPE 232 (538)
Q Consensus 153 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (538)
....+.......+.+....+. .| ..+...+......+. .
T Consensus 273 ~~ksDa~l~~~l~~l~~~~~e--~Y------~~a~~~~te~~~~~~-------------~-------------------- 311 (606)
T KOG0547|consen 273 SDKSDAALAEALEALEKGLEE--GY------LKAYDKATEECLGSE-------------S-------------------- 311 (606)
T ss_pred CccchhhHHHHHHHHHhhCch--hH------HHHHHHHHHHhhhhh-------------h--------------------
Confidence 111122222222222211110 00 000000000000000 0
Q ss_pred CccccHHHHHHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 009278 233 PMELTEEEKEAKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVE 312 (538)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 312 (538)
. ......-.....-+.++...|..++-.|++-.|...|..++.++|.+...+..+|.+|...++.++-...|.++..
T Consensus 312 ~---~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ 388 (606)
T KOG0547|consen 312 S---LSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAED 388 (606)
T ss_pred h---ccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHh
Confidence 0 0000000011345788899999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchhhHHHHHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCChh--------HHHhhhhHHHHHHHHHHHHHc
Q 009278 313 RGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPD--------TLKKLNEAEKAKKELEQQEIF 384 (538)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~--------~~~~~~~~~~a~~~~~~~~~~ 384 (538)
++|++ +.+|+..|.+.+-+++ +++|+..|++++.+.|... ...+.++++++...|+.+.+.
T Consensus 389 ldp~n-------~dvYyHRgQm~flL~q----~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk 457 (606)
T KOG0547|consen 389 LDPEN-------PDVYYHRGQMRFLLQQ----YEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK 457 (606)
T ss_pred cCCCC-------CchhHhHHHHHHHHHH----HHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999 4556666766666667 9999999999999666532 344556666666666666666
Q ss_pred CCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC------CchhHhHHHHHHH-HhCCchhHHHHHHHHHhcCCCch
Q 009278 385 DPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPK------DPRTYSNRAACYT-KLGAMPEGLKDADKCIELDPTFS 457 (538)
Q Consensus 385 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~------~~~~~~~la~~~~-~~~~~~~A~~~~~~al~~~p~~~ 457 (538)
.|+.++++...|.++..+++|++|++.|.+++++.|. ++..+...|.+.. -.+++..|+.++.++++++|..-
T Consensus 458 FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce 537 (606)
T KOG0547|consen 458 FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCE 537 (606)
T ss_pred CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHH
Confidence 6666666666666666666666666666666666666 4444444444322 34566666666666666666666
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHhccCCCCHH
Q 009278 458 KGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQE 492 (538)
Q Consensus 458 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 492 (538)
.++..+|.+..++|+.++|+++|+++..+.-...+
T Consensus 538 ~A~~tlaq~~lQ~~~i~eAielFEksa~lArt~~E 572 (606)
T KOG0547|consen 538 QAYETLAQFELQRGKIDEAIELFEKSAQLARTESE 572 (606)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHH
Confidence 66666666666666666666666666655444333
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=2.6e-34 Score=304.40 Aligned_cols=279 Identities=13% Similarity=0.084 Sum_probs=189.4
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHHHhccCCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHH---------
Q 009278 3 DEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGY--------- 73 (538)
Q Consensus 3 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~--------- 73 (538)
+.++.++......++++.|.+.+.+++.++|+++.++..++.++...|+.++|...++++++++|+++.++
T Consensus 29 ~~Ll~q~~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~ 108 (1157)
T PRK11447 29 QQLLEQVRLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLS 108 (1157)
T ss_pred HHHHHHHHHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhc
Confidence 56899999999999999999999999999999999999999999999999999999999999999998764
Q ss_pred -------HHHHHHHhhccCHHHHHHHHHhhhhcCCCcHHHHhhH-HHHHHHHhhcccCCCCCCCCcccccccCCchhhcc
Q 009278 74 -------SRLGAAHLGLQDYIEAVNSYKKGLDIDPNNEALKSGL-ADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKL 145 (538)
Q Consensus 74 -------~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (538)
+.+|.++...|++++|+..|++++..+|.+......+ ..+....++
T Consensus 109 ~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~-------------------------- 162 (1157)
T PRK11447 109 TPEGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQ-------------------------- 162 (1157)
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCcc--------------------------
Confidence 6678899999999999999999999998886532211 111111111
Q ss_pred cCCCCCCCcccHHHHHHHHHhhhcCCCchhhhhchHHHHHHHH-------HHHhhhcCCCCCCCccc---cccccCCCCC
Q 009278 146 TADPTTRSYLDQDDFRNMMKDIQRNPNNLNLYLKDQRVMQALG-------VLLNVKFKGPTGGDDVE---MQDEDAPKGP 215 (538)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 215 (538)
...++..+.+.+..+|++...++..+.++...+ .+..+............ ..+......+
T Consensus 163 ----------~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~ 232 (1157)
T PRK11447 163 ----------RPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSD 232 (1157)
T ss_pred ----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCCh
Confidence 256778888888999998887776655544332 22222110000000000 0000000000
Q ss_pred CCccccccCCCCCCCCCCccccHHHHHHH----HhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 009278 216 ETSKEETRKPESEPEPEPMELTEEEKEAK----ERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRA 291 (538)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 291 (538)
............. +...........+. ...+.......+|..+...|++++|+..|+++++.+|+++.++..+|
T Consensus 233 ~~~~~l~~~l~~~--p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg 310 (1157)
T PRK11447 233 ASVAALQKYLQVF--SDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALG 310 (1157)
T ss_pred hhHHHHHHHHHHC--CCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 0000000000000 00000000000000 00001112235588999999999999999999999999999999999
Q ss_pred HHHHHhCCHHHHHHHHHHHHHccccchh
Q 009278 292 AVYLEMGKYEECIKDCDKAVERGRELRS 319 (538)
Q Consensus 292 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 319 (538)
.++...|++++|+.+|+++++.+|++..
T Consensus 311 ~~~~~~g~~~eA~~~l~~Al~~~p~~~~ 338 (1157)
T PRK11447 311 QAYSQQGDRARAVAQFEKALALDPHSSN 338 (1157)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCccc
Confidence 9999999999999999999999998653
No 10
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=100.00 E-value=1.4e-32 Score=274.02 Aligned_cols=406 Identities=18% Similarity=0.150 Sum_probs=301.8
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHHHhccCCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHHHHHhh
Q 009278 3 DEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLG 82 (538)
Q Consensus 3 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 82 (538)
..+..+|.+++..|+|++|+..|+++++.+|++..+++.+|.+|..+|++++|+..|..+...++.+......+.....
T Consensus 161 ~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l- 239 (615)
T TIGR00990 161 VYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLL- 239 (615)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH-
Confidence 3578899999999999999999999999999999999999999999999999999999887776654432222211111
Q ss_pred ccCHHHHHHHHHhhhhcCCCcHHHHhhHHHHHHHHhhcccCCCCCCCCcccccccCCchhhcccCCCCCCCc--------
Q 009278 83 LQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSY-------- 154 (538)
Q Consensus 83 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 154 (538)
...+......+++..|.+...+..++..+......... . ........++.....
T Consensus 240 ---~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------~------~~~~~~~~~~~~~~~~~~l~~~~ 301 (615)
T TIGR00990 240 ---KKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRP---------A------GLEDSNELDEETGNGQLQLGLKS 301 (615)
T ss_pred ---HHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcch---------h------hhhcccccccccccchHHHHHHH
Confidence 13556667777788888777666666654322110000 0 000000011110000
Q ss_pred -------ccHHHHHHHHHhhhc---CCCchhhhhchHHHHHHHHHHHhhhcCCCCCCCccccccccCCCCCCCccccccC
Q 009278 155 -------LDQDDFRNMMKDIQR---NPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRK 224 (538)
Q Consensus 155 -------~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (538)
....+...+.+.+.. .|.....+...+.+....+
T Consensus 302 ~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g------------------------------------ 345 (615)
T TIGR00990 302 PESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKG------------------------------------ 345 (615)
T ss_pred HHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcC------------------------------------
Confidence 012233334444443 2444444444444444333
Q ss_pred CCCCCCCCCccccHHHHHHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHH
Q 009278 225 PESEPEPEPMELTEEEKEAKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECI 304 (538)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~ 304 (538)
....++..+...+...|.....+..+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+
T Consensus 346 ------~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 419 (615)
T TIGR00990 346 ------KHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAG 419 (615)
T ss_pred ------CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 23456688888888899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHccccchhhHHHHHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCCh--------hHHHhhhhHHHHHH
Q 009278 305 KDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNP--------DTLKKLNEAEKAKK 376 (538)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~--------~~~~~~~~~~~a~~ 376 (538)
.+|++++.++|++ ...+..+|.++...|+ +++|+..|++++...|.. .++...|++++|+.
T Consensus 420 ~~~~kal~l~P~~-------~~~~~~la~~~~~~g~----~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~ 488 (615)
T TIGR00990 420 KDYQKSIDLDPDF-------IFSHIQLGVTQYKEGS----IASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIE 488 (615)
T ss_pred HHHHHHHHcCccC-------HHHHHHHHHHHHHCCC----HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHH
Confidence 9999999999988 5667778888888888 999999999999988763 36677899999999
Q ss_pred HHHHHHHcCCCchHHH------HHHHHHHH-hcCChHHHHHHHHHHHhcCCCCchhHhHHHHHHHHhCCchhHHHHHHHH
Q 009278 377 ELEQQEIFDPKIADEE------REKGNEFF-KQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKC 449 (538)
Q Consensus 377 ~~~~~~~~~~~~~~~~------~~la~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 449 (538)
.|++++.+.|.....+ ...+..++ ..|++++|+.++++++.++|++..++..+|.++..+|++++|+.+|+++
T Consensus 489 ~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A 568 (615)
T TIGR00990 489 KFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERA 568 (615)
T ss_pred HHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 9999999998754433 23333343 4799999999999999999999999999999999999999999999999
Q ss_pred HhcCCCchHHHHHHHHHHHHccCHHHHHHHHHHHhccCC
Q 009278 450 IELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDP 488 (538)
Q Consensus 450 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 488 (538)
+++.+.....+ ....+.+|.....++.+..|
T Consensus 569 ~~l~~~~~e~~--------~a~~~~~a~~~~~~~~~~~~ 599 (615)
T TIGR00990 569 AELARTEGELV--------QAISYAEATRTQIQVQEDYP 599 (615)
T ss_pred HHHhccHHHHH--------HHHHHHHHHHHHHHHHHHhH
Confidence 99987654422 22244456665555555544
No 11
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=100.00 E-value=6.9e-33 Score=274.76 Aligned_cols=338 Identities=12% Similarity=0.062 Sum_probs=289.8
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHhccCCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHHHHHhhc
Q 009278 4 EAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGL 83 (538)
Q Consensus 4 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 83 (538)
.++..+..+++.|++++|+..++.++...|.++.+++.+|.+....|++++|+..|++++..+|+++.++..+|.++...
T Consensus 44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~ 123 (656)
T PRK15174 44 NIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKS 123 (656)
T ss_pred CHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc
Confidence 34566788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHhhhhcCCCcHHHHhhHHHHHHHHhhcccCCCCCCCCcccccccCCchhhcccCCCCCCCcccHHHHHHH
Q 009278 84 QDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRNM 163 (538)
Q Consensus 84 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (538)
|++++|+..|++++.++|++..++..++.++...|+. +.+...+
T Consensus 124 g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~------------------------------------~eA~~~~ 167 (656)
T PRK15174 124 KQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKE------------------------------------LQAISLA 167 (656)
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCh------------------------------------HHHHHHH
Confidence 9999999999999999999999999999888887665 2333333
Q ss_pred HHhhhcCCCchhhhhchHHHHHHHHHHHhhhcCCCCCCCccccccccCCCCCCCccccccCCCCCCCCCCccccHHHHHH
Q 009278 164 MKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKEA 243 (538)
Q Consensus 164 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (538)
...+...|+..
T Consensus 168 ~~~~~~~P~~~--------------------------------------------------------------------- 178 (656)
T PRK15174 168 RTQAQEVPPRG--------------------------------------------------------------------- 178 (656)
T ss_pred HHHHHhCCCCH---------------------------------------------------------------------
Confidence 33444444432
Q ss_pred HHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHH
Q 009278 244 KERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDE-DISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFK 322 (538)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 322 (538)
..+...+ .+...|++++|+..+++++..+|. .......++.++...|++++|+..+++++...|++
T Consensus 179 -------~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~----- 245 (656)
T PRK15174 179 -------DMIATCL-SFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDG----- 245 (656)
T ss_pred -------HHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC-----
Confidence 2222222 367789999999999998888763 34445566788888999999999999999988887
Q ss_pred HHHHHHHHhHHHHHHhhhcccChhH----HHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHH
Q 009278 323 MIARALTRKGTALVKMAKCSKDYEP----AIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNE 398 (538)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~----A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~ 398 (538)
..++..+|.++...++ +++ |+..|++++. .+|+++.++..+|.+
T Consensus 246 --~~~~~~Lg~~l~~~G~----~~eA~~~A~~~~~~Al~--------------------------l~P~~~~a~~~lg~~ 293 (656)
T PRK15174 246 --AALRRSLGLAYYQSGR----SREAKLQAAEHWRHALQ--------------------------FNSDNVRIVTLYADA 293 (656)
T ss_pred --HHHHHHHHHHHHHcCC----chhhHHHHHHHHHHHHh--------------------------hCCCCHHHHHHHHHH
Confidence 5566667777777777 775 6777777776 899999999999999
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCchHHHHHHHHHHHHccCHHHHHH
Q 009278 399 FFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALE 478 (538)
Q Consensus 399 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 478 (538)
+...|++++|+..+++++..+|+++.++..+|.++...|++++|+..|++++..+|+++..+..+|.++...|++++|+.
T Consensus 294 l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~ 373 (656)
T PRK15174 294 LIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAES 373 (656)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988888888999999999999999
Q ss_pred HHHHHhccCCCCH
Q 009278 479 TYQEGLKHDPQNQ 491 (538)
Q Consensus 479 ~~~~al~~~p~~~ 491 (538)
.|+++++.+|++.
T Consensus 374 ~l~~al~~~P~~~ 386 (656)
T PRK15174 374 VFEHYIQARASHL 386 (656)
T ss_pred HHHHHHHhChhhc
Confidence 9999999998864
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=100.00 E-value=7.1e-32 Score=272.83 Aligned_cols=501 Identities=13% Similarity=0.022 Sum_probs=304.5
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHHHhccCCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHHHHHhh
Q 009278 3 DEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLG 82 (538)
Q Consensus 3 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 82 (538)
..++..|..+...|++++|+..|+++++.+|+++.+++.++.+|+..|++++|+..++++++.+|++...+..++.+
T Consensus 45 ~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i--- 121 (987)
T PRK09782 45 YPRLDKALKAQKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI--- 121 (987)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---
Confidence 46788999999999999999999999999999999999999999999999999999999999999999988888777
Q ss_pred ccCHHHHHHHHHhhhhcCCCcHHHHhhHHHH--------HHHHhhcccCCCCCCCCcccccccCCchhhcccCCCCCCCc
Q 009278 83 LQDYIEAVNSYKKGLDIDPNNEALKSGLADA--------KAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSY 154 (538)
Q Consensus 83 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (538)
+++++|+..|++++..+|++.+++..++.. |...+....+.. . ......+.+...............
T Consensus 122 -~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~-l---r~~~~~~~~~vL~L~~~rlY~~l~ 196 (987)
T PRK09782 122 -PVEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN-D---ATFAASPEGKTLRTDLLQRAIYLK 196 (987)
T ss_pred -ccChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH-H---hhhCCCCCcHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999887 444333221110 0 000000000000000000000000
Q ss_pred ccHHHHHHHHHhhhcCCCchhhhhchHHHHHH--------------------------------------HHHHHhhhcC
Q 009278 155 LDQDDFRNMMKDIQRNPNNLNLYLKDQRVMQA--------------------------------------LGVLLNVKFK 196 (538)
Q Consensus 155 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--------------------------------------~~~~~~~~~~ 196 (538)
..+.++..+.+.++..|.+.......+..+.. ...+....-.
T Consensus 197 dw~~Ai~lL~~L~k~~pl~~~~~~~L~~ay~q~l~~~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~ 276 (987)
T PRK09782 197 QWSQADTLYNEARQQNTLSAAERRQWFDVLLAGQLDDRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPL 276 (987)
T ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhCHHHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCccc
Confidence 00112222333333333333322222111111 1111100000
Q ss_pred CCC-------------CCCccccccccCC--------------------------------CCCCCcccccc-CCCCCCC
Q 009278 197 GPT-------------GGDDVEMQDEDAP--------------------------------KGPETSKEETR-KPESEPE 230 (538)
Q Consensus 197 ~~~-------------~~~~~~~~~~~~~--------------------------------~~~~~~~~~~~-~~~~~~~ 230 (538)
... .+.....+...++ ..|.......+ .......
T Consensus 277 ~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 356 (987)
T PRK09782 277 FTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATR 356 (987)
T ss_pred ccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccC
Confidence 000 0000000000000 00000000000 0000001
Q ss_pred CCCccccHHHHHHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHh--------------------------------
Q 009278 231 PEPMELTEEEKEAKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALE-------------------------------- 278 (538)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~-------------------------------- 278 (538)
..+++...........|.....+...+......|++++|...|+.+..
T Consensus 357 ~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 436 (987)
T PRK09782 357 NKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVA 436 (987)
T ss_pred chhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHH
Confidence 111111111111222244455555556666666666666665555543
Q ss_pred ---------------------------------hCCC--CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHH
Q 009278 279 ---------------------------------LDDE--DISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKM 323 (538)
Q Consensus 279 ---------------------------------~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 323 (538)
..|. ++.+++.+|.++.. +++.+|+..+.+++...|++.
T Consensus 437 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~----- 510 (987)
T PRK09782 437 ILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW----- 510 (987)
T ss_pred HhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-----
Confidence 2244 66677778877776 777788888888888877641
Q ss_pred HHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCChh-------HHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHH
Q 009278 324 IARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPD-------TLKKLNEAEKAKKELEQQEIFDPKIADEEREKG 396 (538)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la 396 (538)
....++.++...++ +++|+..|++++...+... .+...|++++|...+.+++..+|.....+..++
T Consensus 511 ---~~L~lA~al~~~Gr----~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La 583 (987)
T PRK09782 511 ---QHRAVAYQAYQVED----YATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLH 583 (987)
T ss_pred ---HHHHHHHHHHHCCC----HHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 23344555555666 8888888877766544422 345567777777777777777777776666666
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCchHHHHHHHHHHHHccCHHHH
Q 009278 397 NEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKA 476 (538)
Q Consensus 397 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 476 (538)
......|++++|+..|+++++.+|+ +.++.++|.++.+.|++++|+..|++++.++|+++.++.++|.++...|++++|
T Consensus 584 ~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeA 662 (987)
T PRK09782 584 AQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQS 662 (987)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 6666667888888888888877775 777777787788888888888888888888888777778888777778888888
Q ss_pred HHHHHHHhccCCCCHHHHHHHHHHHHHhhhhccCCCChHHHHHHHHhccC-Cchhhh
Q 009278 477 LETYQEGLKHDPQNQELLDGVRRCVQQINKAGRGELSPEELKERQAKGMQ-DPKFRT 532 (538)
Q Consensus 477 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~p~~~~ 532 (538)
+..|+++++++|+++.++..++.++..+|++++|. ..+++++. +|+...
T Consensus 663 i~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~-------~~l~~Al~l~P~~a~ 712 (987)
T PRK09782 663 REMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQ-------HYARLVIDDIDNQAL 712 (987)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHH-------HHHHHHHhcCCCCch
Confidence 88888888888888888888888887777777766 44444444 454433
No 13
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1e-31 Score=254.03 Aligned_cols=421 Identities=16% Similarity=0.162 Sum_probs=255.1
Q ss_pred HHHHHHHHHHhccCCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCc-hHHHHHHHHHHhhccCHHHHHHHHHhhh
Q 009278 19 EAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDW-SKGYSRLGAAHLGLQDYIEAVNSYKKGL 97 (538)
Q Consensus 19 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~al 97 (538)
+.|...|..++...|++..++++.|.+.+..|+|..|+.+|++++.++|.. +...+.+|.|+..+|+.+.|+..|.+++
T Consensus 147 ~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ral 226 (1018)
T KOG2002|consen 147 DDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERAL 226 (1018)
T ss_pred HHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHH
Confidence 666666666666666666666666666666666666666666666666653 3445566666666666666666666666
Q ss_pred hcCCCcHHHHhhHHHHHHHHhhcccCCCCCCCCcccccccCCchhhcccCCCCCCCcccHHHHHHHHHhhhcCCCchhhh
Q 009278 98 DIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRNMMKDIQRNPNNLNLY 177 (538)
Q Consensus 98 ~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 177 (538)
+++|.+..+...|+.+.....+.. -....+..+.++...+|.++.+.
T Consensus 227 qLdp~~v~alv~L~~~~l~~~d~~---------------------------------s~~~~~~ll~~ay~~n~~nP~~l 273 (1018)
T KOG2002|consen 227 QLDPTCVSALVALGEVDLNFNDSD---------------------------------SYKKGVQLLQRAYKENNENPVAL 273 (1018)
T ss_pred hcChhhHHHHHHHHHHHHHccchH---------------------------------HHHHHHHHHHHHHhhcCCCcHHH
Confidence 666666666666665554443220 01234444455555555554443
Q ss_pred hchHHHHHHHHHHHhhhcCCCCCCCccccccccCCCCCCCccccccCCCCCCCCCCccccHHHHHHHHhHHHHHHHHHHH
Q 009278 178 LKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKEAKERKEKALKEKEAG 257 (538)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (538)
.-....+-..+.+..+..-. ..........+..+..++.+|
T Consensus 274 ~~LAn~fyfK~dy~~v~~la---------------------------------------~~ai~~t~~~~~~aes~Y~~g 314 (1018)
T KOG2002|consen 274 NHLANHFYFKKDYERVWHLA---------------------------------------EHAIKNTENKSIKAESFYQLG 314 (1018)
T ss_pred HHHHHHHhhcccHHHHHHHH---------------------------------------HHHHHhhhhhHHHHHHHHHHH
Confidence 32222111111111110000 000001112234555666666
Q ss_pred HHHHhcccHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHHHH---------
Q 009278 258 NAAYKKKEFEKAIEHYSSALELDDED-ISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARA--------- 327 (538)
Q Consensus 258 ~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~--------- 327 (538)
..+..+|+|++|..+|.+++..+|++ .-.++.+|.+|+..|+++.|+.+|+++++..|++......++..
T Consensus 315 Rs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~ 394 (1018)
T KOG2002|consen 315 RSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQE 394 (1018)
T ss_pred HHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhH
Confidence 66666666666666666666666666 55566666666666666666666666666666655443333222
Q ss_pred ------------------------------------------------------------HHHhHHHHHHhhhcccChhH
Q 009278 328 ------------------------------------------------------------LTRKGTALVKMAKCSKDYEP 347 (538)
Q Consensus 328 ------------------------------------------------------------~~~~~~~~~~~~~~~~~~~~ 347 (538)
+.++|..++.+|. +.+
T Consensus 395 ~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~----~~~ 470 (1018)
T KOG2002|consen 395 KRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGN----IEK 470 (1018)
T ss_pred HHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcC----hHH
Confidence 2334445555666 888
Q ss_pred HHHHHHHHHhcCC-----C-------------hhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcCChHHHH
Q 009278 348 AIETFQKALTEHR-----N-------------PDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAI 409 (538)
Q Consensus 348 A~~~~~~~~~~~~-----~-------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 409 (538)
|...|..++.... + +.++..++++..|.+.|..+++..|...+++..+|.+....++..+|.
T Consensus 471 A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~ 550 (1018)
T KOG2002|consen 471 ALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEAS 550 (1018)
T ss_pred HHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHH
Confidence 8888888776511 1 113345566677778888888888888888888887777778888888
Q ss_pred HHHHHHHhcCCCCchhHhHHHHHHHHhCC------------------------------------------------chh
Q 009278 410 QHYTESLRRNPKDPRTYSNRAACYTKLGA------------------------------------------------MPE 441 (538)
Q Consensus 410 ~~~~~al~~~~~~~~~~~~la~~~~~~~~------------------------------------------------~~~ 441 (538)
..++.++..+..+|.++..+|.+++...+ +++
T Consensus 551 ~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~K 630 (1018)
T KOG2002|consen 551 LLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEK 630 (1018)
T ss_pred HHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHH
Confidence 88888888777777666666655544322 367
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHHccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhccCCCChH
Q 009278 442 GLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDGVRRCVQQINKAGRGELSPE 515 (538)
Q Consensus 442 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~ 515 (538)
|+..|.+++..+|.|..+-..+|.++...|++.+|...|.++.+--.++.++|.+++.|+..+|++..|...|+
T Consensus 631 Alq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe 704 (1018)
T KOG2002|consen 631 ALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYE 704 (1018)
T ss_pred HHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHH
Confidence 78888888888888777767777777777777777777777666665666677777777777777766665544
No 14
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1e-31 Score=254.07 Aligned_cols=425 Identities=16% Similarity=0.131 Sum_probs=328.2
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHHHhccCCcc---hHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCc-hHHHHHHHH
Q 009278 3 DEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDN---HVLYSNRSAAHASLHNYADALADAKKTVELKPDW-SKGYSRLGA 78 (538)
Q Consensus 3 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~ 78 (538)
.++..++..++..|+|+.+..+...++...... ++.+|.+|.+|..+|+|++|..+|.+++..+|++ .-.++.+|.
T Consensus 271 ~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQ 350 (1018)
T KOG2002|consen 271 VALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQ 350 (1018)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhH
Confidence 467788899999999999999999988765433 4669999999999999999999999999999988 778899999
Q ss_pred HHhhccCHHHHHHHHHhhhhcCCCcHHHHhhHHHHHHHHhhcccCCCCCCCCcccccccCCchhhcccCCCCCCCcccHH
Q 009278 79 AHLGLQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQD 158 (538)
Q Consensus 79 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (538)
.|...|+++.|..+|+++++..|++.+....|+.+|...+... -..+.
T Consensus 351 m~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~--------------------------------~~~d~ 398 (1018)
T KOG2002|consen 351 MYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQ--------------------------------EKRDK 398 (1018)
T ss_pred HHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhh--------------------------------HHHHH
Confidence 9999999999999999999999999999999999988774221 11255
Q ss_pred HHHHHHHhhhcCCCchhhhhchHHHHHHHHHHHhhhcCCCCCCCccccccccCCCCCCCccccccCCCCCCCCCCccccH
Q 009278 159 DFRNMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTE 238 (538)
Q Consensus 159 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (538)
+.....+.+...|.+..+|+..+.++..-..+..+..-. .++ ..
T Consensus 399 a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~--------~A~----------------------------d~ 442 (1018)
T KOG2002|consen 399 ASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYG--------NAL----------------------------DI 442 (1018)
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHH--------HHH----------------------------HH
Confidence 667777888888999999888777665544332211000 000 00
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhh-----CCCC-----HHHHHHHHHHHHHhCCHHHHHHHHH
Q 009278 239 EEKEAKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALEL-----DDED-----ISYLTNRAAVYLEMGKYEECIKDCD 308 (538)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~p~~-----~~~~~~la~~~~~~~~~~~A~~~~~ 308 (538)
+. ....+-.+..+.++|..++..|++.+|...|..++.. +++. ....+++|.++...++++.|.+.|.
T Consensus 443 L~--~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk 520 (1018)
T KOG2002|consen 443 LE--SKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYK 520 (1018)
T ss_pred HH--HcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 00 0001124566777888888888888888888887765 1221 2347788888888888888888888
Q ss_pred HHHHccccchhhHHHHHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCCh--------------------------
Q 009278 309 KAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNP-------------------------- 362 (538)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-------------------------- 362 (538)
.+++.+|.. ..++.++|......+. ..+|...++.++......
T Consensus 521 ~Ilkehp~Y-------Id~ylRl~~ma~~k~~----~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~ 589 (1018)
T KOG2002|consen 521 SILKEHPGY-------IDAYLRLGCMARDKNN----LYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFET 589 (1018)
T ss_pred HHHHHCchh-------HHHHHHhhHHHHhccC----cHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHH
Confidence 888887776 4444555433333333 555555555555433220
Q ss_pred ---------h--HH-------------------HhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcCChHHHHHHH
Q 009278 363 ---------D--TL-------------------KKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHY 412 (538)
Q Consensus 363 ---------~--~~-------------------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 412 (538)
+ .+ ...+..++|++.|.+++..+|.+..+-..+|.++...|++.+|..+|
T Consensus 590 i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIF 669 (1018)
T KOG2002|consen 590 ILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIF 669 (1018)
T ss_pred HHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHH
Confidence 0 11 23345688999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhcC--CCchHHHHHHHHHHHHccCHHHHHHHHHHHhccCCCC
Q 009278 413 TESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELD--PTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQN 490 (538)
Q Consensus 413 ~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 490 (538)
.++.+-..+.+.+|.++|.||..+|+|-.|++.|+.+++.. .+++.++..||.+++..|.+.+|...+.+|+.+.|.+
T Consensus 670 sqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~ 749 (1018)
T KOG2002|consen 670 SQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSN 749 (1018)
T ss_pred HHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCcc
Confidence 99998887889999999999999999999999999999874 4678899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhc
Q 009278 491 QELLDGVRRCVQQINKAG 508 (538)
Q Consensus 491 ~~~~~~l~~~~~~~~~~~ 508 (538)
+.+.++++.+..+++...
T Consensus 750 ~~v~FN~a~v~kkla~s~ 767 (1018)
T KOG2002|consen 750 TSVKFNLALVLKKLAESI 767 (1018)
T ss_pred chHHhHHHHHHHHHHHHH
Confidence 999999999998887543
No 15
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=100.00 E-value=4e-31 Score=262.24 Aligned_cols=349 Identities=12% Similarity=0.031 Sum_probs=293.7
Q ss_pred HhhcCCHHHHHHHHHHHhccC---CcchHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHHHHHhhccCHHH
Q 009278 12 AFSSGDYEAAVRHFTEAISLS---PDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIE 88 (538)
Q Consensus 12 ~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~ 88 (538)
++++.+|+.---+|..+-+.. ..+..-....+..+.+.|++++|+..++.++...|+++.++..+|.+....|++++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~ 94 (656)
T PRK15174 15 LLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDA 94 (656)
T ss_pred hhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHH
Confidence 455666665555555544332 23445567778889999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhcCCCcHHHHhhHHHHHHHHhhcccCCCCCCCCcccccccCCchhhcccCCCCCCCcccHHHHHHHHHhhh
Q 009278 89 AVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRNMMKDIQ 168 (538)
Q Consensus 89 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 168 (538)
|+..|++++..+|+++.++..+
T Consensus 95 A~~~l~~~l~~~P~~~~a~~~l---------------------------------------------------------- 116 (656)
T PRK15174 95 VLQVVNKLLAVNVCQPEDVLLV---------------------------------------------------------- 116 (656)
T ss_pred HHHHHHHHHHhCCCChHHHHHH----------------------------------------------------------
Confidence 9999999999999987765443
Q ss_pred cCCCchhhhhchHHHHHHHHHHHhhhcCCCCCCCccccccccCCCCCCCccccccCCCCCCCCCCccccHHHHHHHHhHH
Q 009278 169 RNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKEAKERKE 248 (538)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (538)
T Consensus 117 -------------------------------------------------------------------------------- 116 (656)
T PRK15174 117 -------------------------------------------------------------------------------- 116 (656)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHHHHH
Q 009278 249 KALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARAL 328 (538)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (538)
|.++...|++++|+..|++++..+|+++.++..++.++...|++++|+..+.+++...|++...+
T Consensus 117 --------a~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~------- 181 (656)
T PRK15174 117 --------ASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMI------- 181 (656)
T ss_pred --------HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHH-------
Confidence 55667778888888888888888888888888888888888888888888888888888764332
Q ss_pred HHhHHHHHHhhhcccChhHHHHHHHHHHhcCCCh---------hHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHH
Q 009278 329 TRKGTALVKMAKCSKDYEPAIETFQKALTEHRNP---------DTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEF 399 (538)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~ 399 (538)
...+ .+...++ +++|+..+++++...+.. ..+...|++++|+..+.+++..+|+++.++..+|.++
T Consensus 182 ~~~~-~l~~~g~----~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l 256 (656)
T PRK15174 182 ATCL-SFLNKSR----LPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAY 256 (656)
T ss_pred HHHH-HHHHcCC----HHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 2222 2445555 888888888887765421 2455678888888888888889999999999999999
Q ss_pred HhcCChHH----HHHHHHHHHhcCCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCchHHHHHHHHHHHHccCHHH
Q 009278 400 FKQQKYPE----AIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDK 475 (538)
Q Consensus 400 ~~~~~~~~----A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 475 (538)
...|++++ |+..|++++..+|+++.++..+|.++...|++++|+..+++++..+|+++.++..+|.++...|++++
T Consensus 257 ~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~e 336 (656)
T PRK15174 257 YQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTA 336 (656)
T ss_pred HHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH
Confidence 99999986 89999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhccCCCChHHHH
Q 009278 476 ALETYQEGLKHDPQNQELLDGVRRCVQQINKAGRGELSPEELK 518 (538)
Q Consensus 476 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 518 (538)
|+..|++++..+|++......++.++...|+.++|...++++.
T Consensus 337 A~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al 379 (656)
T PRK15174 337 ASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYI 379 (656)
T ss_pred HHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999999999999998888888999999999999886544433
No 16
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=100.00 E-value=1.2e-30 Score=264.57 Aligned_cols=389 Identities=15% Similarity=0.094 Sum_probs=321.0
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHhccCCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHHHHHhhccCH
Q 009278 7 AKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDY 86 (538)
Q Consensus 7 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~ 86 (538)
.-..+....|++++|+..|.++...+|....++..+|.++...|++++|+..|++++..+|+++.++..+|.++...|++
T Consensus 20 d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~ 99 (765)
T PRK10049 20 DWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQY 99 (765)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH
Confidence 34567888999999999999999888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhcCCCcHHHHhhHHHHHHHHhhcccCCCCCCCCcccccccCCchhhcccCCCCCCCcccHHHHHHHHHh
Q 009278 87 IEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRNMMKD 166 (538)
Q Consensus 87 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (538)
++|+..++++++..|++.. +..++.++...|+. ..++..+.+.
T Consensus 100 ~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~------------------------------------~~Al~~l~~a 142 (765)
T PRK10049 100 DEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRH------------------------------------WDELRAMTQA 142 (765)
T ss_pred HHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCH------------------------------------HHHHHHHHHH
Confidence 9999999999999999999 99999998887665 3455555555
Q ss_pred hhcCCCchhhhhchHHHHHHHHHHHhhhcCCCCCCCccccccccCCCCCCCccccccCCCCCCCCCCccccHHHHHHHHh
Q 009278 167 IQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKEAKER 246 (538)
Q Consensus 167 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (538)
+...|+
T Consensus 143 l~~~P~-------------------------------------------------------------------------- 148 (765)
T PRK10049 143 LPRAPQ-------------------------------------------------------------------------- 148 (765)
T ss_pred HHhCCC--------------------------------------------------------------------------
Confidence 555555
Q ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHH-----HHHHHHHHHH-----HhCCH---HHHHHHHHHHHHc
Q 009278 247 KEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDIS-----YLTNRAAVYL-----EMGKY---EECIKDCDKAVER 313 (538)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~-----~~~~la~~~~-----~~~~~---~~A~~~~~~~~~~ 313 (538)
...++..+|.++...+..++|+..++++.. .|.... ....+..+.. ..+++ ++|+..++.+++.
T Consensus 149 --~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~ 225 (765)
T PRK10049 149 --TQQYPTEYVQALRNNRLSAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEAL 225 (765)
T ss_pred --CHHHHHHHHHHHHHCCChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhh
Confidence 445556678888889999999999998776 554311 1122222222 22345 7899999999987
Q ss_pred cccchhhHHHHHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCC---------hhHHHhhhhHHHHHHHHHHHHHc
Q 009278 314 GRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRN---------PDTLKKLNEAEKAKKELEQQEIF 384 (538)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~---------~~~~~~~~~~~~a~~~~~~~~~~ 384 (538)
.|.++........+.......+...++ +++|+..|++++...+. ...+...+++++|+..|++++..
T Consensus 226 ~~~~p~~~~~~~~a~~d~l~~Ll~~g~----~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~ 301 (765)
T PRK10049 226 WHDNPDATADYQRARIDRLGALLARDR----YKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYH 301 (765)
T ss_pred cccCCccchHHHHHHHHHHHHHHHhhh----HHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhc
Confidence 666655433334444442233456677 99999999999987532 24677889999999999999988
Q ss_pred CCCc----hHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC---------------chhHhHHHHHHHHhCCchhHHHH
Q 009278 385 DPKI----ADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKD---------------PRTYSNRAACYTKLGAMPEGLKD 445 (538)
Q Consensus 385 ~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---------------~~~~~~la~~~~~~~~~~~A~~~ 445 (538)
+|.. ......++.++...|++++|+..++++....|.. ..++..+|.++...|++++|+..
T Consensus 302 ~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~ 381 (765)
T PRK10049 302 PETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMR 381 (765)
T ss_pred CCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8766 3567778888999999999999999999887732 24667899999999999999999
Q ss_pred HHHHHhcCCCchHHHHHHHHHHHHccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhccCCCC
Q 009278 446 ADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDGVRRCVQQINKAGRGELS 513 (538)
Q Consensus 446 ~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~ 513 (538)
+++++...|+++.++..+|.++...|++++|+..+++++.++|++..++..++.+...+|++.+|...
T Consensus 382 l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~ 449 (765)
T PRK10049 382 ARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVL 449 (765)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998888754
No 17
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=100.00 E-value=3.1e-30 Score=261.57 Aligned_cols=379 Identities=14% Similarity=0.125 Sum_probs=301.0
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHHHhccCCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHHHHHh
Q 009278 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHL 81 (538)
Q Consensus 2 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 81 (538)
+.++...|..+...|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++..+|+++. +..+|.++.
T Consensus 49 a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~ 127 (765)
T PRK10049 49 ARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYK 127 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHH
Confidence 3568899999999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred hccCHHHHHHHHHhhhhcCCCcHHHHhhHHHHHHHHhhcccCCCCCCCCcccccccCCchhhcccCCCCCCCcccHHHHH
Q 009278 82 GLQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFR 161 (538)
Q Consensus 82 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (538)
..|++++|+..++++++..|++..++..++.++...+.. ..++.
T Consensus 128 ~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~------------------------------------e~Al~ 171 (765)
T PRK10049 128 RAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLS------------------------------------APALG 171 (765)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCh------------------------------------HHHHH
Confidence 999999999999999999999999999888877655432 11221
Q ss_pred HHHHhhhcCCCchhhhhchHHHHHHHHHHHhhhcCCCCCCCccccccccCCCCCCCccccccCCCCCCCCCCccccHHHH
Q 009278 162 NMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEK 241 (538)
Q Consensus 162 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (538)
.+..... .|... .
T Consensus 172 ~l~~~~~-~p~~~------------------------------------------------------------------~ 184 (765)
T PRK10049 172 AIDDANL-TPAEK------------------------------------------------------------------R 184 (765)
T ss_pred HHHhCCC-CHHHH------------------------------------------------------------------H
Confidence 1111111 22100 0
Q ss_pred HHHHhHHHHHHHHHHHHHHHhcccH---HHHHHHHHHHHhhCCCCHHH-------HHHHHHHHHHhCCHHHHHHHHHHHH
Q 009278 242 EAKERKEKALKEKEAGNAAYKKKEF---EKAIEHYSSALELDDEDISY-------LTNRAAVYLEMGKYEECIKDCDKAV 311 (538)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~A~~~~~~al~~~p~~~~~-------~~~la~~~~~~~~~~~A~~~~~~~~ 311 (538)
.+...+....+...++......+++ ++|+..++.+++..|.++.. .......+...|++++|+..|++++
T Consensus 185 ~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll 264 (765)
T PRK10049 185 DLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLK 264 (765)
T ss_pred HHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh
Confidence 0000011111111111112223345 88999999999765444322 2221223467799999999999999
Q ss_pred HccccchhhHHHHHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCCh-----h-------HHHhhhhHHHHHHHHH
Q 009278 312 ERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNP-----D-------TLKKLNEAEKAKKELE 379 (538)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-----~-------~~~~~~~~~~a~~~~~ 379 (538)
+..|..+.. +...++.++...++ +++|+..|++++...|.. . .+...+++++|+..++
T Consensus 265 ~~~~~~P~~------a~~~la~~yl~~g~----~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~ 334 (765)
T PRK10049 265 AEGQIIPPW------AQRWVASAYLKLHQ----PEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTA 334 (765)
T ss_pred ccCCCCCHH------HHHHHHHHHHhcCC----cHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHH
Confidence 886543322 22224777777878 999999999999876543 1 3456799999999999
Q ss_pred HHHHcCCC---------------chHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHhHHHHHHHHhCCchhHHH
Q 009278 380 QQEIFDPK---------------IADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLK 444 (538)
Q Consensus 380 ~~~~~~~~---------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~ 444 (538)
++....|. ...++..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+.
T Consensus 335 ~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~ 414 (765)
T PRK10049 335 HTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAEN 414 (765)
T ss_pred HHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHH
Confidence 99988763 245678899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCchHHHHHHHHHHHHccCHHHHHHHHHHHhccCCCCHHHH
Q 009278 445 DADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELL 494 (538)
Q Consensus 445 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 494 (538)
.+++++.++|+++.+++.+|.++...|++++|...++++++..|+++.+.
T Consensus 415 ~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~ 464 (765)
T PRK10049 415 ELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQ 464 (765)
T ss_pred HHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 99999999999999999999999999999999999999999999998764
No 18
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=100.00 E-value=4.1e-29 Score=209.37 Aligned_cols=338 Identities=19% Similarity=0.302 Sum_probs=282.4
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHHHhccCCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHHHHHhh
Q 009278 3 DEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLG 82 (538)
Q Consensus 3 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 82 (538)
+-.+++|..++..|++..|+..|..+++.+|++..+++.+|.+|+.+|+-.-|+..+.+++++.|+...+...+|.++++
T Consensus 39 ekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK 118 (504)
T KOG0624|consen 39 EKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLK 118 (504)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhh
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHHHHhhhhcCCCcHHHH---hhHHHHHHHHhhcccCCCCCCCCcccccccCCchhhcccCCCCCCCcccHHH
Q 009278 83 LQDYIEAVNSYKKGLDIDPNNEALK---SGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDD 159 (538)
Q Consensus 83 ~~~~~~A~~~~~~al~~~p~~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (538)
+|++++|...|..++..+|++.... ..++.+
T Consensus 119 ~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~---------------------------------------------- 152 (504)
T KOG0624|consen 119 QGELEQAEADFDQVLQHEPSNGLVLEAQSKLALI---------------------------------------------- 152 (504)
T ss_pred cccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhH----------------------------------------------
Confidence 9999999999999999999764432 211111
Q ss_pred HHHHHHhhhcCCCchhhhhchHHHHHHHHHHHhhhcCCCCCCCccccccccCCCCCCCccccccCCCCCCCCCCccccHH
Q 009278 160 FRNMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEE 239 (538)
Q Consensus 160 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (538)
T Consensus 153 -------------------------------------------------------------------------------- 152 (504)
T KOG0624|consen 153 -------------------------------------------------------------------------------- 152 (504)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchh
Q 009278 240 EKEAKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRS 319 (538)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 319 (538)
.....+......++..|++..|+......+++.|.+...+...+.||...|++..||..++.+-++..++..
T Consensus 153 --------~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe 224 (504)
T KOG0624|consen 153 --------QEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTE 224 (504)
T ss_pred --------HHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchH
Confidence 122223344556778899999999999999999999999999999999999999999999999999988855
Q ss_pred hHHHHHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCChh----HHHhhhhHHHHHHHHHHHHHcCCCchHHHHHH
Q 009278 320 DFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPD----TLKKLNEAEKAKKELEQQEIFDPKIADEEREK 395 (538)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 395 (538)
....++..++.+| + .+.++...+.+++.+|+.. .+..+..+.+.+..
T Consensus 225 ~~ykis~L~Y~vg-------d----~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les------------------ 275 (504)
T KOG0624|consen 225 GHYKISQLLYTVG-------D----AENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLES------------------ 275 (504)
T ss_pred HHHHHHHHHHhhh-------h----HHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHH------------------
Confidence 5555555555544 4 9999999999999887754 22233333333222
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCch----hHhHHHHHHHHhCCchhHHHHHHHHHhcCCCchHHHHHHHHHHHHcc
Q 009278 396 GNEFFKQQKYPEAIQHYTESLRRNPKDPR----TYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLK 471 (538)
Q Consensus 396 a~~~~~~~~~~~A~~~~~~al~~~~~~~~----~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 471 (538)
+......++|.++++..+++++.+|..+. ....+..|+..-|++-+|+..+.+++.++|+++.++...+.+|....
T Consensus 276 ~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE 355 (504)
T KOG0624|consen 276 AEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDE 355 (504)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhH
Confidence 23345678899999999999999998543 44557788889999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhccCCCCHHHHHHHHHHHHH
Q 009278 472 EYDKALETYQEGLKHDPQNQELLDGVRRCVQQ 503 (538)
Q Consensus 472 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 503 (538)
.|+.|+..|++|.+.+|+|..+...+-++...
T Consensus 356 ~YD~AI~dye~A~e~n~sn~~~reGle~Akrl 387 (504)
T KOG0624|consen 356 MYDDAIHDYEKALELNESNTRAREGLERAKRL 387 (504)
T ss_pred HHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH
Confidence 99999999999999999999988887766443
No 19
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.98 E-value=1.9e-28 Score=248.05 Aligned_cols=255 Identities=9% Similarity=-0.002 Sum_probs=227.5
Q ss_pred HHHHhHH--HHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchh
Q 009278 242 EAKERKE--KALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRS 319 (538)
Q Consensus 242 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 319 (538)
.+...|. .+.+++.+|.++.. +++.+|+..+.+++...|++. ....+|.++...|++++|+..|+++....|..
T Consensus 467 al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~-- 542 (987)
T PRK09782 467 LLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATALAAWQKISLHDMSN-- 542 (987)
T ss_pred hcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHHHHHHHHHhccCCCc--
Confidence 3344455 88899999999998 899999999999999999865 46777888889999999999999988765553
Q ss_pred hHHHHHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCChhH-----HHhh---hhHHHHHHHHHHHHHcCCCchHH
Q 009278 320 DFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDT-----LKKL---NEAEKAKKELEQQEIFDPKIADE 391 (538)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-----~~~~---~~~~~a~~~~~~~~~~~~~~~~~ 391 (538)
..+..+|.++...|+ +++|+.++++++...|.... .... |++++|+..+.+++..+|+ +..
T Consensus 543 ------~a~~~la~all~~Gd----~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a 611 (987)
T PRK09782 543 ------EDLLAAANTAQAAGN----GAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANA 611 (987)
T ss_pred ------HHHHHHHHHHHHCCC----HHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHH
Confidence 234566777777777 99999999999998776431 2334 9999999999999999997 999
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCchHHHHHHHHHHHHcc
Q 009278 392 EREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLK 471 (538)
Q Consensus 392 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 471 (538)
+..+|.++.+.|++++|+..|++++..+|+++.++.++|.++...|++++|+..|+++++.+|+++.+++++|.++..+|
T Consensus 612 ~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lG 691 (987)
T PRK09782 612 YVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLD 691 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhccCC
Q 009278 472 EYDKALETYQEGLKHDPQNQELLDGVRRCVQQINKAGRGE 511 (538)
Q Consensus 472 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~ 511 (538)
++++|+.+|++++.++|++..+....+.+.....++..+.
T Consensus 692 d~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~ 731 (987)
T PRK09782 692 DMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLH 731 (987)
T ss_pred CHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999988888777665
No 20
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.97 E-value=1.9e-29 Score=230.21 Aligned_cols=304 Identities=22% Similarity=0.189 Sum_probs=170.1
Q ss_pred HHHHHHHHHHHh--cCCHHHHHHHHHHHhccCCCchHHHHHHHHHHhhccCHHHHHHHHHhhhhcCCCcHHHHhhHHHHH
Q 009278 37 VLYSNRSAAHAS--LHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNEALKSGLADAK 114 (538)
Q Consensus 37 ~~~~~la~~~~~--~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 114 (538)
..+..+|..|.. +-+..+|+..|.+.-...++...++..+|..|+.+++|++|..+|+.+-++.|-..+..-.+..++
T Consensus 318 ~llr~~~~~~~~~s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~L 397 (638)
T KOG1126|consen 318 ELLRGLGEGYRSLSQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTL 397 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHH
Confidence 556667766654 456789999999977788888899999999999999999999999999999987655443333333
Q ss_pred HHHhhcccCCCCCCCCcccccccCCchhhcccCCCCCCCcccHHHHHHHHHhhhcCCCchhhhhchHHHHHHHHHHHhhh
Q 009278 115 AAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRNMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVK 194 (538)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (538)
..+.+.. .++.+
T Consensus 398 WHLq~~v----------------------------------------------------------------~Ls~L---- 409 (638)
T KOG1126|consen 398 WHLQDEV----------------------------------------------------------------ALSYL---- 409 (638)
T ss_pred HHHHhhH----------------------------------------------------------------HHHHH----
Confidence 3321110 00000
Q ss_pred cCCCCCCCccccccccCCCCCCCccccccCCCCCCCCCCccccHHHHHHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHH
Q 009278 195 FKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKEAKERKEKALKEKEAGNAAYKKKEFEKAIEHYS 274 (538)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 274 (538)
....+..++..+..|..+|.+|.-+++++.|+++|+
T Consensus 410 --------------------------------------------aq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~ 445 (638)
T KOG1126|consen 410 --------------------------------------------AQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFK 445 (638)
T ss_pred --------------------------------------------HHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHH
Confidence 011122223344444445555555555555555555
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHHHHHHHhHHHHHHhhhcccChhHHHHHHHH
Q 009278 275 SALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQK 354 (538)
Q Consensus 275 ~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 354 (538)
+++.++|....++..+|.=+....++|.|..+|++++..+|.+ ..+|+.+|.+|.+.++ ++.|.-.|++
T Consensus 446 RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rh-------YnAwYGlG~vy~Kqek----~e~Ae~~fqk 514 (638)
T KOG1126|consen 446 RAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRH-------YNAWYGLGTVYLKQEK----LEFAEFHFQK 514 (638)
T ss_pred HhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchh-------hHHHHhhhhheeccch----hhHHHHHHHh
Confidence 5555555555555555555555555555555555555555444 4445555555555555 5555555555
Q ss_pred HHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHhHHHHHHH
Q 009278 355 ALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYT 434 (538)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~ 434 (538)
|+. ++|.+......+|.++.+.|+.++|+.+|++|+.++|.++...+..|.+++
T Consensus 515 A~~--------------------------INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~ 568 (638)
T KOG1126|consen 515 AVE--------------------------INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILF 568 (638)
T ss_pred hhc--------------------------CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHH
Confidence 544 445555555555555555555555555555555555555555555555555
Q ss_pred HhCCchhHHHHHHHHHhcCCCchHHHHHHHHHHHHccCHHHHHHHHHHHhccCCC
Q 009278 435 KLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQ 489 (538)
Q Consensus 435 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 489 (538)
.++++++|+..+++.-++.|+...+++.+|.+|.++|+.+.|+..|.-|..++|.
T Consensus 569 ~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 569 SLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred hhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 5555555555555555555555555555555555555555555555555555544
No 21
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.97 E-value=6.6e-29 Score=226.71 Aligned_cols=304 Identities=21% Similarity=0.251 Sum_probs=240.1
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHhccCCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHHHHHhhccC
Q 009278 6 KAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQD 85 (538)
Q Consensus 6 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 85 (538)
+..|......-+..+|+..|.+.-...++..+++..+|.+|+.+++|++|..+|+.+-++.|-..+..-.+..++..+.+
T Consensus 323 ~~~~~~~~s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~ 402 (638)
T KOG1126|consen 323 LGEGYRSLSQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD 402 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh
Confidence 34455556666778999999997677788889999999999999999999999998887766444333333333433333
Q ss_pred HHHHHHHHHhhhhcCCCcHHHHhhHHHHHHHHhhcccCCCCCCCCcccccccCCchhhcccCCCCCCCcccHHHHHHHHH
Q 009278 86 YIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRNMMK 165 (538)
Q Consensus 86 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (538)
--+---.-+..+..+|+.|+.|..++.++..+++. +.++..+.+
T Consensus 403 ~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh------------------------------------~~Aik~f~R 446 (638)
T KOG1126|consen 403 EVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDH------------------------------------DTAIKCFKR 446 (638)
T ss_pred hHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHH------------------------------------HHHHHHHHH
Confidence 22222222333444444444444444444444333 223333333
Q ss_pred hhhcCCCchhhhhchHHHHHHHHHHHhhhcCCCCCCCccccccccCCCCCCCccccccCCCCCCCCCCccccHHHHHHHH
Q 009278 166 DIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKEAKE 245 (538)
Q Consensus 166 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (538)
+++.+|.
T Consensus 447 AiQldp~------------------------------------------------------------------------- 453 (638)
T KOG1126|consen 447 AIQLDPR------------------------------------------------------------------------- 453 (638)
T ss_pred hhccCCc-------------------------------------------------------------------------
Confidence 3333332
Q ss_pred hHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHH
Q 009278 246 RKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIA 325 (538)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 325 (538)
.+.+|..+|.-+....++++|..+|+.++..+|.+..+|+.+|.+|.++++++.|.-.|++|++++|.+ .
T Consensus 454 ---faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~n-------s 523 (638)
T KOG1126|consen 454 ---FAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSN-------S 523 (638)
T ss_pred ---cchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccc-------h
Confidence 223345567888899999999999999999999999999999999999999999999999999999998 7
Q ss_pred HHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcCCh
Q 009278 326 RALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKY 405 (538)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 405 (538)
.+....|.++..+++ .++|+..|++|+. ++|.++-..+..|.+++..+++
T Consensus 524 vi~~~~g~~~~~~k~----~d~AL~~~~~A~~--------------------------ld~kn~l~~~~~~~il~~~~~~ 573 (638)
T KOG1126|consen 524 VILCHIGRIQHQLKR----KDKALQLYEKAIH--------------------------LDPKNPLCKYHRASILFSLGRY 573 (638)
T ss_pred hHHhhhhHHHHHhhh----hhHHHHHHHHHHh--------------------------cCCCCchhHHHHHHHHHhhcch
Confidence 788899999999999 9999999999999 8999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCchH
Q 009278 406 PEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSK 458 (538)
Q Consensus 406 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~ 458 (538)
++|+..+++.-++.|++..+++.+|.+|.++|+.+.|+..|.-|..++|.-..
T Consensus 574 ~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 574 VEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 99999999999999999999999999999999999999999999999997655
No 22
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=3.2e-28 Score=213.42 Aligned_cols=400 Identities=17% Similarity=0.206 Sum_probs=281.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHHHHHhhccCHHHHHHHHHhhhhcCCCcHHHHhhHHHHHHH
Q 009278 37 VLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAA 116 (538)
Q Consensus 37 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 116 (538)
..+-..|.-+++.|+|++||++|.+++.+.|+.+..|.+++-||...|+|++.++...++++++|+...++...+..+..
T Consensus 116 ~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~ 195 (606)
T KOG0547|consen 116 AALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQ 195 (606)
T ss_pred HHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHh
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcccCCCCCCCCcccccccCCchhhcccCCCCCCCcccHHHHHHHHHhhh--cCCCchhhhhchHHHHHHHHHHHhhh
Q 009278 117 ASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRNMMKDIQ--RNPNNLNLYLKDQRVMQALGVLLNVK 194 (538)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (538)
+|....+........+...|.+. ...+.....+...+...+.+.+. ..|..+...+ +..+.+
T Consensus 196 lg~~~eal~D~tv~ci~~~F~n~------s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~f--------i~syf~-- 259 (606)
T KOG0547|consen 196 LGKFDEALFDVTVLCILEGFQNA------SIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATF--------IASYFG-- 259 (606)
T ss_pred hccHHHHHHhhhHHHHhhhcccc------hhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHH--------HHHHHh--
Confidence 98874332111111111111000 00000011111112222222222 1111100000 000000
Q ss_pred cCCCCCCCccccccccCCCCCCCccccccCCCCCCCCCCccccHHHHHHHHhHHHHHHHHHHHHHHHh---cccHHHHHH
Q 009278 195 FKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKEAKERKEKALKEKEAGNAAYK---KKEFEKAIE 271 (538)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~A~~ 271 (538)
.|..-+.. ...... ...+....-+.-... ...|.+|..
T Consensus 260 ---------------sF~~~~~~----------~~~~~~--------------~ksDa~l~~~l~~l~~~~~e~Y~~a~~ 300 (606)
T KOG0547|consen 260 ---------------SFHADPKP----------LFDNKS--------------DKSDAALAEALEALEKGLEEGYLKAYD 300 (606)
T ss_pred ---------------hccccccc----------cccCCC--------------ccchhhHHHHHHHHHhhCchhHHHHHH
Confidence 01000000 000000 011111111222222 236777777
Q ss_pred HHHHHHhhCC----CC---------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHHHHHHHhHHHHHHh
Q 009278 272 HYSSALELDD----ED---------ISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKM 338 (538)
Q Consensus 272 ~~~~al~~~p----~~---------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (538)
.+.+.....- .+ ..++...|..++-.|++-.|...++++|.++|... ..|..++.+|...
T Consensus 301 ~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~-------~lyI~~a~~y~d~ 373 (606)
T KOG0547|consen 301 KATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFN-------SLYIKRAAAYADE 373 (606)
T ss_pred HHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccc-------hHHHHHHHHHhhh
Confidence 7766654321 12 56788889999999999999999999999999873 4477788888888
Q ss_pred hhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 009278 339 AKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRR 418 (538)
Q Consensus 339 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 418 (538)
.+ .++....|+++.. ++|.++++|+..|.+++-.+++++|+.-|++++.+
T Consensus 374 ~~----~~~~~~~F~~A~~--------------------------ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L 423 (606)
T KOG0547|consen 374 NQ----SEKMWKDFNKAED--------------------------LDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISL 423 (606)
T ss_pred hc----cHHHHHHHHHHHh--------------------------cCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 77 8888888988888 89999999999999999999999999999999999
Q ss_pred CCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCchHHHHHHHHHHHHccCHHHHHHHHHHHhccCCC------CHH
Q 009278 419 NPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQ------NQE 492 (538)
Q Consensus 419 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~------~~~ 492 (538)
+|++.-++..++.+.++++++++++..|+.+++..|+.++++...|.++..++++++|++.|.+++.+.|. ++.
T Consensus 424 ~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~ 503 (606)
T KOG0547|consen 424 DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAA 503 (606)
T ss_pred ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998 444
Q ss_pred HHHHHHHHHHHhhhhccCCCChHHHHHHHHhccC-Cchhhhhc
Q 009278 493 LLDGVRRCVQQINKAGRGELSPEELKERQAKGMQ-DPKFRTYS 534 (538)
Q Consensus 493 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~p~~~~~~ 534 (538)
.+.+-+.+..+ +. ..+..+...+.+++. ||..-.+.
T Consensus 504 plV~Ka~l~~q---wk---~d~~~a~~Ll~KA~e~Dpkce~A~ 540 (606)
T KOG0547|consen 504 PLVHKALLVLQ---WK---EDINQAENLLRKAIELDPKCEQAY 540 (606)
T ss_pred hhhhhhHhhhc---hh---hhHHHHHHHHHHHHccCchHHHHH
Confidence 43333333322 11 455566788888888 88765543
No 23
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.97 E-value=3.9e-27 Score=223.94 Aligned_cols=319 Identities=15% Similarity=0.156 Sum_probs=266.0
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHHHHHhhccCHHHHHHHHHhhhhcCCCcHHHHhhHHHHH
Q 009278 35 NHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNEALKSGLADAK 114 (538)
Q Consensus 35 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 114 (538)
.....+.+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++...+....
T Consensus 34 ~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~--------- 104 (389)
T PRK11788 34 RLSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTRE--------- 104 (389)
T ss_pred hccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHH---------
Confidence 34667778999999999999999999999999999999999999999999999999999998874222110
Q ss_pred HHHhhcccCCCCCCCCcccccccCCchhhcccCCCCCCCcccHHHHHHHHHhhhcCCCchhhhhchHHHHHHHHHHHhhh
Q 009278 115 AAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRNMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVK 194 (538)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (538)
T Consensus 105 -------------------------------------------------------------------------------- 104 (389)
T PRK11788 105 -------------------------------------------------------------------------------- 104 (389)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCCccccccccCCCCCCCccccccCCCCCCCCCCccccHHHHHHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHH
Q 009278 195 FKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKEAKERKEKALKEKEAGNAAYKKKEFEKAIEHYS 274 (538)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 274 (538)
.....+..+|.++...|++++|+..|+
T Consensus 105 -----------------------------------------------------~~~~~~~~La~~~~~~g~~~~A~~~~~ 131 (389)
T PRK11788 105 -----------------------------------------------------QRLLALQELGQDYLKAGLLDRAEELFL 131 (389)
T ss_pred -----------------------------------------------------HHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 122346677999999999999999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHHHHHHHhHHHHHHhhhcccChhHHHHHHHH
Q 009278 275 SALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQK 354 (538)
Q Consensus 275 ~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 354 (538)
++++.+|.+..++..++.++...|++++|+..++++++..|.+... ..+..+..+|.++...++ +++|+..|++
T Consensus 132 ~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~~~~la~~~~~~~~----~~~A~~~~~~ 205 (389)
T PRK11788 132 QLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRV--EIAHFYCELAQQALARGD----LDAARALLKK 205 (389)
T ss_pred HHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchH--HHHHHHHHHHHHHHhCCC----HHHHHHHHHH
Confidence 9999999999999999999999999999999999999988765332 234556778888888888 9999999999
Q ss_pred HHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-chhHhHHHHHH
Q 009278 355 ALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKD-PRTYSNRAACY 433 (538)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~la~~~ 433 (538)
+++ ..|+...++..+|.++...|++++|+..|++++..+|.+ ..++..++.+|
T Consensus 206 al~--------------------------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~ 259 (389)
T PRK11788 206 ALA--------------------------ADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECY 259 (389)
T ss_pred HHh--------------------------HCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHH
Confidence 988 678888899999999999999999999999999988876 46788899999
Q ss_pred HHhCCchhHHHHHHHHHhcCCCchHHHHHHHHHHHHccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHH--hhhhccCC
Q 009278 434 TKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDGVRRCVQQ--INKAGRGE 511 (538)
Q Consensus 434 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~--~~~~~~a~ 511 (538)
...|++++|+..++++++..|+... +..+|.++...|++++|+..|+++++..|++..+...+...+.. .|+..++.
T Consensus 260 ~~~g~~~~A~~~l~~~~~~~p~~~~-~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~ 338 (389)
T PRK11788 260 QALGDEAEGLEFLRRALEEYPGADL-LLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESL 338 (389)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCchH-HHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHH
Confidence 9999999999999999999998654 48899999999999999999999999999988766555544432 23455444
Q ss_pred CChHHHHHHHHhccC-Cchhh
Q 009278 512 LSPEELKERQAKGMQ-DPKFR 531 (538)
Q Consensus 512 ~~~~~~~~~~~~~~~-~p~~~ 531 (538)
.. +.+.+++.+. +|.+.
T Consensus 339 ~~---~~~~~~~~~~~~p~~~ 356 (389)
T PRK11788 339 LL---LRDLVGEQLKRKPRYR 356 (389)
T ss_pred HH---HHHHHHHHHhCCCCEE
Confidence 33 4555555555 77643
No 24
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.5e-26 Score=201.83 Aligned_cols=349 Identities=20% Similarity=0.154 Sum_probs=284.9
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHhccCCcchHHHHHHHHH-----------------------------HHhcCCHHHH
Q 009278 5 AKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAA-----------------------------HASLHNYADA 55 (538)
Q Consensus 5 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~-----------------------------~~~~g~~~~A 55 (538)
++..|.++-..|....|+..|..++...|-+..+|..|+.+ +..+.+.+++
T Consensus 167 lYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~q~~e~ 246 (559)
T KOG1155|consen 167 LYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQELHQHEEA 246 (559)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHH
Confidence 56789999999999999999999999888877666655543 4445566777
Q ss_pred HHHHHHHhcc-CCCchHHHHHHHHHHhhccCHHHHHHHHHhhhhcCCCcHHHHhhHHHHHHHHhhcccCCCCCCCCcccc
Q 009278 56 LADAKKTVEL-KPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGS 134 (538)
Q Consensus 56 ~~~~~~al~~-~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 134 (538)
+.-++..+.. .|.+...-...|.+.....++++|+..|+...+.+|-..+-...+..++......
T Consensus 247 ~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~-------------- 312 (559)
T KOG1155|consen 247 LQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDK-------------- 312 (559)
T ss_pred HHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhh--------------
Confidence 7777777776 6777777788888888888899999999888888887655444443333222110
Q ss_pred cccCCchhhcccCCCCCCCcccHHHHHHHHHhhhcCCCchhhhhchHHHHHHHHHHHhhhcCCCCCCCccccccccCCCC
Q 009278 135 AFAGPEMWAKLTADPTTRSYLDQDDFRNMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKG 214 (538)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (538)
.+ ++.+
T Consensus 313 ----------------------------------------------sk----Ls~L------------------------ 318 (559)
T KOG1155|consen 313 ----------------------------------------------SK----LSYL------------------------ 318 (559)
T ss_pred ----------------------------------------------HH----HHHH------------------------
Confidence 00 0000
Q ss_pred CCCccccccCCCCCCCCCCccccHHHHHHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 009278 215 PETSKEETRKPESEPEPEPMELTEEEKEAKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVY 294 (538)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 294 (538)
.......+.-.++..-.+|+.|.-.++.++|+.+|+++++++|....+|..+|.-|
T Consensus 319 ------------------------A~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEy 374 (559)
T KOG1155|consen 319 ------------------------AQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEY 374 (559)
T ss_pred ------------------------HHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHH
Confidence 00001111223445566799999999999999999999999999999999999999
Q ss_pred HHhCCHHHHHHHHHHHHHccccchhhHHHHHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHH
Q 009278 295 LEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKA 374 (538)
Q Consensus 295 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a 374 (538)
..+.+...|+..|+++++++|.+ .++|+.+|+.|.-++. +.=|+-+|+++..
T Consensus 375 vEmKNt~AAi~sYRrAvdi~p~D-------yRAWYGLGQaYeim~M----h~YaLyYfqkA~~----------------- 426 (559)
T KOG1155|consen 375 VEMKNTHAAIESYRRAVDINPRD-------YRAWYGLGQAYEIMKM----HFYALYYFQKALE----------------- 426 (559)
T ss_pred HHhcccHHHHHHHHHHHhcCchh-------HHHHhhhhHHHHHhcc----hHHHHHHHHHHHh-----------------
Confidence 99999999999999999999998 7888888988888888 9999999999999
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHhHHHHHHHHhCCchhHHHHHHHHHh---
Q 009278 375 KKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIE--- 451 (538)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--- 451 (538)
..|+++..|..+|.+|.+.++.++|+++|.+++.....+..++..+|.+|.++++.++|..+|++.++
T Consensus 427 ---------~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~ 497 (559)
T KOG1155|consen 427 ---------LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSE 497 (559)
T ss_pred ---------cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999988899999999999999999999999999998
Q ss_pred ----cCCCchHHHHHHHHHHHHccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Q 009278 452 ----LDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDGVRRCVQ 502 (538)
Q Consensus 452 ----~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 502 (538)
..|+...+...|+..+.+.+++++|..+..+++.-++.-.++...+..+..
T Consensus 498 ~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e~eeak~LlReir~ 552 (559)
T KOG1155|consen 498 LEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGETECEEAKALLREIRK 552 (559)
T ss_pred hhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 456667788889999999999999999999999987776666655555443
No 25
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.96 E-value=2e-25 Score=221.73 Aligned_cols=445 Identities=13% Similarity=0.046 Sum_probs=302.9
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHHHhccCCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHHHHHh
Q 009278 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHL 81 (538)
Q Consensus 2 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 81 (538)
++..+..|.+.+++|++..|+..|+++++.+|+++.....++.++...|+.++|+.++++++.-.|.....+..+|.++.
T Consensus 34 ~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~ 113 (822)
T PRK14574 34 ADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYR 113 (822)
T ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHH
Confidence 45678999999999999999999999999999996555588899999999999999999999333444444455588999
Q ss_pred hccCHHHHHHHHHhhhhcCCCcHHHHhhHHHHHHHHhhcccCCCCCCCCcccccccCCchhhcccCCCCCCCcccHHHHH
Q 009278 82 GLQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFR 161 (538)
Q Consensus 82 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (538)
..|++++|+..|+++++.+|+++.++..++.++...++. ..++.
T Consensus 114 ~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~------------------------------------~eAl~ 157 (822)
T PRK14574 114 NEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRG------------------------------------GVVLK 157 (822)
T ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCH------------------------------------HHHHH
Confidence 999999999999999999999999998887777776554 45556
Q ss_pred HHHHhhhcCCCchhhhhchHHHHHHHHHHHhhhcCCCCCCCccccccccCCCCCCCccccccCCCCCCCCCCccccHHHH
Q 009278 162 NMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEK 241 (538)
Q Consensus 162 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (538)
.+.+....+|.+... .....+....+ ....++.....
T Consensus 158 ~l~~l~~~dp~~~~~-l~layL~~~~~------------------------------------------~~~~AL~~~ek 194 (822)
T PRK14574 158 QATELAERDPTVQNY-MTLSYLNRATD------------------------------------------RNYDALQASSE 194 (822)
T ss_pred HHHHhcccCcchHHH-HHHHHHHHhcc------------------------------------------hHHHHHHHHHH
Confidence 666666666652221 11111100000 00012233333
Q ss_pred HHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHH--HHHHHHHHh---------C---CHHHHHHHH
Q 009278 242 EAKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLT--NRAAVYLEM---------G---KYEECIKDC 307 (538)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~--~la~~~~~~---------~---~~~~A~~~~ 307 (538)
.+...|.+...+..+...+...|-...|.+...+--.........++ ..+.-..+. + -.+.|+..+
T Consensus 195 ll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~ 274 (822)
T PRK14574 195 AVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADY 274 (822)
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHH
Confidence 44444444444444444444444444444333321111100000000 000000100 0 123455555
Q ss_pred HHHHHccccchhhHHHHHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCC---C------hhHHHhhhhHHHHHHHH
Q 009278 308 DKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHR---N------PDTLKKLNEAEKAKKEL 378 (538)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~---~------~~~~~~~~~~~~a~~~~ 378 (538)
+..+...+..++.......+....-.++...++ +.+++..|+.+..... . ++.+...++.++|+..|
T Consensus 275 ~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r----~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~ 350 (822)
T PRK14574 275 QNLLTRWGKDPEAQADYQRARIDRLGALLVRHQ----TADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPIL 350 (822)
T ss_pred HHHHhhccCCCccchHHHHHHHHHHHHHHHhhh----HHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 666654444443322223344444455566666 9999999988875542 2 45778889999999999
Q ss_pred HHHHHcCC------CchHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC---------------CCchhHhHHHHHHHHhC
Q 009278 379 EQQEIFDP------KIADEEREKGNEFFKQQKYPEAIQHYTESLRRNP---------------KDPRTYSNRAACYTKLG 437 (538)
Q Consensus 379 ~~~~~~~~------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~---------------~~~~~~~~la~~~~~~~ 437 (538)
.+++...| ........+...+...++|++|..++++..+..| +.......++.++...|
T Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~g 430 (822)
T PRK14574 351 SSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALN 430 (822)
T ss_pred HHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcC
Confidence 99887553 2333356778888999999999999999887555 11346677899999999
Q ss_pred CchhHHHHHHHHHhcCCCchHHHHHHHHHHHHccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhccCCCChHHH
Q 009278 438 AMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDGVRRCVQQINKAGRGELSPEEL 517 (538)
Q Consensus 438 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 517 (538)
++.+|.+.+++.+...|.++..+..+|.++...|.+.+|...++.+..++|++..+....+.+...++++.+|... .
T Consensus 431 dl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~---~ 507 (822)
T PRK14574 431 DLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELL---T 507 (822)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHH---H
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999888744 2
Q ss_pred HHHHHhccCCchhhh
Q 009278 518 KERQAKGMQDPKFRT 532 (538)
Q Consensus 518 ~~~~~~~~~~p~~~~ 532 (538)
....+..+++|.++.
T Consensus 508 ~~l~~~~Pe~~~~~~ 522 (822)
T PRK14574 508 DDVISRSPEDIPSQE 522 (822)
T ss_pred HHHHhhCCCchhHHH
Confidence 233334444554443
No 26
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.5e-25 Score=195.52 Aligned_cols=393 Identities=14% Similarity=0.096 Sum_probs=297.4
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHhccCCcchHHHHHHHHHHHhcCCHHH-------------------HHHHHHHHhcc
Q 009278 5 AKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYAD-------------------ALADAKKTVEL 65 (538)
Q Consensus 5 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~-------------------A~~~~~~al~~ 65 (538)
.+..|..++....|+.|.-.++.... + ...+..-.|.+..|.-+. .+..+.+-++.
T Consensus 81 ~y~laks~fd~kEf~Raa~fL~~~~s--~---k~~FL~lysk~La~~kk~~e~~~~~l~~~~~~~~~~~~l~~L~~~le~ 155 (559)
T KOG1155|consen 81 IYLLAKSYFDCKEFERAAFFLQNCKS--K---KSAFLRLYSKYLAGEKKSEEEMAELLGRLESFSRINSELIELNKPLES 155 (559)
T ss_pred hhhhHhhhhhhHHHHHHHHHHHhcch--H---HHHHHHHHHHHHhhhHHHHHHHHHhhccchhhhhhhhHHHHHhhHHHH
Confidence 35678899999999999999888754 2 222222222222221111 11111111111
Q ss_pred ----CCCchHHHHHHHHHHhhccCHHHHHHHHHhhhhcCCCcHHHHhhHHHHHHHHhhcccCCCCCCCCcccccccCCch
Q 009278 66 ----KPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEM 141 (538)
Q Consensus 66 ----~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (538)
...++..++..|.++...|....|+..|..++...|-+..+|..|..+.......
T Consensus 156 ~~~~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~--------------------- 214 (559)
T KOG1155|consen 156 KHCGGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEIL--------------------- 214 (559)
T ss_pred HHhcccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHH---------------------
Confidence 1346778899999999999999999999999999999999999887764333110
Q ss_pred hhcccCCCCCCCcccHHHHHHHHHhhhcCCCchhhhhchHHHHHHHHHHHhhhcCCCCCCCccccccccCCCCCCCcccc
Q 009278 142 WAKLTADPTTRSYLDQDDFRNMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEE 221 (538)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (538)
.......|.+
T Consensus 215 ----------------------~~l~~~l~~~------------------------------------------------ 224 (559)
T KOG1155|consen 215 ----------------------SILVVGLPSD------------------------------------------------ 224 (559)
T ss_pred ----------------------HHHHhcCccc------------------------------------------------
Confidence 0000001100
Q ss_pred ccCCCCCCCCCCccccHHHHHHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHhCCH
Q 009278 222 TRKPESEPEPEPMELTEEEKEAKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALEL-DDEDISYLTNRAAVYLEMGKY 300 (538)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~~~~ 300 (538)
...-.-+.++.++....+.++++.-++..... .|.+.......|.+.....++
T Consensus 225 --------------------------~h~M~~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDf 278 (559)
T KOG1155|consen 225 --------------------------MHWMKKFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDF 278 (559)
T ss_pred --------------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhH
Confidence 12222344566676777888888888888887 788888888899999999999
Q ss_pred HHHHHHHHHHHHccccchhhHHHHHHHHHHhHHHHHHhhhcccChhHHHHHH-HHHHhcCC---C-----hhHHHhhhhH
Q 009278 301 EECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETF-QKALTEHR---N-----PDTLKKLNEA 371 (538)
Q Consensus 301 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~-~~~~~~~~---~-----~~~~~~~~~~ 371 (538)
++|+..|+.+.+.+|-..+.......+++.+.. ...+.++ +.+...+. . ++.+...++.
T Consensus 279 D~a~s~Feei~knDPYRl~dmdlySN~LYv~~~------------~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eH 346 (559)
T KOG1155|consen 279 DQAESVFEEIRKNDPYRLDDMDLYSNVLYVKND------------KSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEH 346 (559)
T ss_pred HHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhh------------hHHHHHHHHHHHHhccCCccceeeehhHHHHHHhH
Confidence 999999999999888766665555555554432 1222222 22222221 1 3456667788
Q ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHhHHHHHHHHhCCchhHHHHHHHHHh
Q 009278 372 EKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIE 451 (538)
Q Consensus 372 ~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 451 (538)
++|+.+|+++++++|....+|..+|.-|..+++...|+..|++|++++|.+..+|+.+|..|..++...=|+-+|++++.
T Consensus 347 EKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~ 426 (559)
T KOG1155|consen 347 EKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALE 426 (559)
T ss_pred HHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHh
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCchHHHHHHHHHHHHccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhccCCCChHHHHHHHHhccC-Cchh
Q 009278 452 LDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDGVRRCVQQINKAGRGELSPEELKERQAKGMQ-DPKF 530 (538)
Q Consensus 452 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~p~~ 530 (538)
..|+++..|..+|.||.+.++.++|+.+|.+++.....+..++..|++++.++++..+|...+++..+.....-. +|+.
T Consensus 427 ~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t 506 (559)
T KOG1155|consen 427 LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDET 506 (559)
T ss_pred cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHH
Confidence 999999999999999999999999999999999999999999999999999999999999999988887644333 5544
Q ss_pred h
Q 009278 531 R 531 (538)
Q Consensus 531 ~ 531 (538)
.
T Consensus 507 ~ 507 (559)
T KOG1155|consen 507 I 507 (559)
T ss_pred H
Confidence 3
No 27
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.96 E-value=3.7e-26 Score=217.22 Aligned_cols=298 Identities=13% Similarity=0.063 Sum_probs=249.6
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHhccCCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCc----hHHHHHHHHH
Q 009278 4 EAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDW----SKGYSRLGAA 79 (538)
Q Consensus 4 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~ 79 (538)
..+..|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++...+.. ..++..+|.+
T Consensus 37 ~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~ 116 (389)
T PRK11788 37 RDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQD 116 (389)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 456789999999999999999999999999999999999999999999999999999998854322 3578899999
Q ss_pred HhhccCHHHHHHHHHhhhhcCCCcHHHHhhHHHHHHHHhhcccCCCCCCCCcccccccCCchhhcccCCCCCCCcccHHH
Q 009278 80 HLGLQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDD 159 (538)
Q Consensus 80 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (538)
|...|++++|+..|+++++.+|.+..+
T Consensus 117 ~~~~g~~~~A~~~~~~~l~~~~~~~~~----------------------------------------------------- 143 (389)
T PRK11788 117 YLKAGLLDRAEELFLQLVDEGDFAEGA----------------------------------------------------- 143 (389)
T ss_pred HHHCCCHHHHHHHHHHHHcCCcchHHH-----------------------------------------------------
Confidence 999999999999999999887765443
Q ss_pred HHHHHHhhhcCCCchhhhhchHHHHHHHHHHHhhhcCCCCCCCccccccccCCCCCCCccccccCCCCCCCCCCccccHH
Q 009278 160 FRNMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEE 239 (538)
Q Consensus 160 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (538)
T Consensus 144 -------------------------------------------------------------------------------- 143 (389)
T PRK11788 144 -------------------------------------------------------------------------------- 143 (389)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCH-----HHHHHHHHHHHHhCCHHHHHHHHHHHHHcc
Q 009278 240 EKEAKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDI-----SYLTNRAAVYLEMGKYEECIKDCDKAVERG 314 (538)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 314 (538)
+..++.++...|++++|+..++++++..|.+. ..+..+|.++...|++++|+..++++++..
T Consensus 144 -------------~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 210 (389)
T PRK11788 144 -------------LQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD 210 (389)
T ss_pred -------------HHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC
Confidence 33456677778999999999999998887653 356678889999999999999999999988
Q ss_pred ccchhhHHHHHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCc-hHHHH
Q 009278 315 RELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKI-ADEER 393 (538)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~ 393 (538)
|+. ..++..+|.++...++ +++|+..+++++. .+|.. ..++.
T Consensus 211 p~~-------~~~~~~la~~~~~~g~----~~~A~~~~~~~~~--------------------------~~p~~~~~~~~ 253 (389)
T PRK11788 211 PQC-------VRASILLGDLALAQGD----YAAAIEALERVEE--------------------------QDPEYLSEVLP 253 (389)
T ss_pred cCC-------HHHHHHHHHHHHHCCC----HHHHHHHHHHHHH--------------------------HChhhHHHHHH
Confidence 876 4566777787877777 9999999999887 44443 45677
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCchHHHHHHHHHHHH--cc
Q 009278 394 EKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFF--LK 471 (538)
Q Consensus 394 ~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~--~g 471 (538)
.++.++...|++++|+..++++++..|+.. .+..+|.++...|++++|+..++++++..|+++.....++..... .|
T Consensus 254 ~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~-~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g 332 (389)
T PRK11788 254 KLMECYQALGDEAEGLEFLRRALEEYPGAD-LLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEG 332 (389)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCch-HHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCc
Confidence 889999999999999999999999999764 458899999999999999999999999999987655445444322 45
Q ss_pred CHHHHHHHHHHHhc
Q 009278 472 EYDKALETYQEGLK 485 (538)
Q Consensus 472 ~~~~A~~~~~~al~ 485 (538)
+..+|+..+++.++
T Consensus 333 ~~~~a~~~~~~~~~ 346 (389)
T PRK11788 333 RAKESLLLLRDLVG 346 (389)
T ss_pred cchhHHHHHHHHHH
Confidence 88888888877664
No 28
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.96 E-value=1.9e-25 Score=210.62 Aligned_cols=371 Identities=17% Similarity=0.149 Sum_probs=288.7
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHHHhccCCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHHHHHhh
Q 009278 3 DEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLG 82 (538)
Q Consensus 3 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 82 (538)
+.++..|+.++..|++++|...+.++|..+|.++.+|+.+|.+|.++|+.++|...+-.|-.++|.+.+.|..++.....
T Consensus 140 ~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~ 219 (895)
T KOG2076|consen 140 RQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQ 219 (895)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHh
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHHHHhhhhcCCCcHHHHhhHHHHHHHHhhcccCCCCCCCCcccccccCCchhhcccCCCCCCCcccHHHHHH
Q 009278 83 LQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRN 162 (538)
Q Consensus 83 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (538)
+|++.+|.-+|.+|++.+|.+.......+.++...|.. ..+...
T Consensus 220 ~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~------------------------------------~~Am~~ 263 (895)
T KOG2076|consen 220 LGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDL------------------------------------KRAMET 263 (895)
T ss_pred cccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChH------------------------------------HHHHHH
Confidence 99999999999999999999999999999999998876 456677
Q ss_pred HHHhhhcCCCchhhhhchHHHHHHHHHHHhhhcCCCCCCCccccccccCCCCCCCccccccCCCCCCCCCCccccHHHHH
Q 009278 163 MMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKE 242 (538)
Q Consensus 163 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (538)
+.+.++..|..--.+
T Consensus 264 f~~l~~~~p~~d~er----------------------------------------------------------------- 278 (895)
T KOG2076|consen 264 FLQLLQLDPPVDIER----------------------------------------------------------------- 278 (895)
T ss_pred HHHHHhhCCchhHHH-----------------------------------------------------------------
Confidence 777777777211111
Q ss_pred HHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--cccch
Q 009278 243 AKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDD--EDISYLTNRAAVYLEMGKYEECIKDCDKAVER--GRELR 318 (538)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~ 318 (538)
.-..-...+..+...++-+.|++.++.++.... ...+.+..++.++....+++.|.......... .+++.
T Consensus 279 ------~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~ 352 (895)
T KOG2076|consen 279 ------IEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDS 352 (895)
T ss_pred ------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChh
Confidence 111223346667777777999999999998432 24456778899999999999999887766551 11110
Q ss_pred h--------------------hHHHHHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHH
Q 009278 319 S--------------------DFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKEL 378 (538)
Q Consensus 319 ~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 378 (538)
. ....+..+...++.+..+... ..+++..+..--..
T Consensus 353 e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e----~~e~ll~~l~~~n~-------------------- 408 (895)
T KOG2076|consen 353 EWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERE----LLEALLHFLVEDNV-------------------- 408 (895)
T ss_pred hhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccc----hHHHHHHHHHHhcC--------------------
Confidence 0 000001123333333333322 33333332211110
Q ss_pred HHHHHcCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC-CchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCch
Q 009278 379 EQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPK-DPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFS 457 (538)
Q Consensus 379 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 457 (538)
...+.++.+..++..+...|+|.+|+.+|..+....+. +..+|+.+|.||..+|.+++|+.+|++++...|++.
T Consensus 409 -----~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~ 483 (895)
T KOG2076|consen 409 -----WVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNL 483 (895)
T ss_pred -----ChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCch
Confidence 12356788999999999999999999999998877663 467999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHhccCCC---------CHHHHHHHHHHHHHhhhhcc
Q 009278 458 KGYTRKGAIQFFLKEYDKALETYQEGLKHDPQ---------NQELLDGVRRCVQQINKAGR 509 (538)
Q Consensus 458 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~---------~~~~~~~l~~~~~~~~~~~~ 509 (538)
++...|+.++.++|+.++|.+.+.....-+|. +..+......++.+.|+.++
T Consensus 484 D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~ 544 (895)
T KOG2076|consen 484 DARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREE 544 (895)
T ss_pred hhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHH
Confidence 99999999999999999999999987744422 23455666777777777665
No 29
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=6e-25 Score=196.79 Aligned_cols=351 Identities=16% Similarity=0.116 Sum_probs=279.1
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHhccCCcchHHHHHHHHHHHhcC-----------------CHHHHHHHHHHHh---
Q 009278 4 EAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLH-----------------NYADALADAKKTV--- 63 (538)
Q Consensus 4 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-----------------~~~~A~~~~~~al--- 63 (538)
.++.+|.+|....++++|...|.+|+..++.+.++...+-...+-.- ...+=++.+-++.
T Consensus 143 ic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k 222 (611)
T KOG1173|consen 143 ICYLRGKVYVALDNREEARDKYKEALLADAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCK 222 (611)
T ss_pred eeeeeeehhhhhccHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhh
Confidence 35678999999999999999999999999988766655544332221 1111111111111
Q ss_pred -------ccCC--------CchHHHHHHHHHHhhccCHHHHHHHHHhhhhcCCCcHHHHhhHHHHHHHHhhcccCCCCCC
Q 009278 64 -------ELKP--------DWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPA 128 (538)
Q Consensus 64 -------~~~p--------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~ 128 (538)
..+| +++......+..++..++|.+-.+..+..++.+|-+..++.....++...|+.
T Consensus 223 ~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~-------- 294 (611)
T KOG1173|consen 223 NRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKS-------- 294 (611)
T ss_pred hccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhccc--------
Confidence 0112 46677888999999999999999999999999999988776554455555443
Q ss_pred CCcccccccCCchhhcccCCCCCCCcccHHHHHHHHHhhhcCCCchhhhhchHHHHHHHHHHHhhhcCCCCCCCcccccc
Q 009278 129 DNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRNMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQD 208 (538)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (538)
..-+....+.
T Consensus 295 ----------------------------n~Lf~lsh~L------------------------------------------ 304 (611)
T KOG1173|consen 295 ----------------------------NKLFLLSHKL------------------------------------------ 304 (611)
T ss_pred ----------------------------chHHHHHHHH------------------------------------------
Confidence 1111112222
Q ss_pred ccCCCCCCCccccccCCCCCCCCCCccccHHHHHHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHH
Q 009278 209 EDAPKGPETSKEETRKPESEPEPEPMELTEEEKEAKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLT 288 (538)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 288 (538)
....|..+..|+..|..|...|++.+|..+|.++..++|....+|.
T Consensus 305 ----------------------------------V~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl 350 (611)
T KOG1173|consen 305 ----------------------------------VDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWL 350 (611)
T ss_pred ----------------------------------HHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHH
Confidence 2333456666888899999999999999999999999999999999
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCChhHHHhh
Q 009278 289 NRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKL 368 (538)
Q Consensus 289 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 368 (538)
..|..+...|+.++|+.+|..+-++.|..... .+.+|.-|...+. +.-|...|..++.
T Consensus 351 ~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP-------~LYlgmey~~t~n----~kLAe~Ff~~A~a----------- 408 (611)
T KOG1173|consen 351 AFGHSFAGEGEHDQAMAAYFTAARLMPGCHLP-------SLYLGMEYMRTNN----LKLAEKFFKQALA----------- 408 (611)
T ss_pred HHhHHhhhcchHHHHHHHHHHHHHhccCCcch-------HHHHHHHHHHhcc----HHHHHHHHHHHHh-----------
Confidence 99999999999999999999999998887433 3445555665666 8888888888888
Q ss_pred hhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC----C---CchhHhHHHHHHHHhCCchh
Q 009278 369 NEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNP----K---DPRTYSNRAACYTKLGAMPE 441 (538)
Q Consensus 369 ~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~----~---~~~~~~~la~~~~~~~~~~~ 441 (538)
+.|.++-++..+|.+.+..+.|.+|..+|+.++..-+ . ....+.++|.++.+++++++
T Consensus 409 ---------------i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~e 473 (611)
T KOG1173|consen 409 ---------------IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEE 473 (611)
T ss_pred ---------------cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHH
Confidence 8999999999999999999999999999999984322 1 23568999999999999999
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHHccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHH
Q 009278 442 GLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDGVRRCVQQ 503 (538)
Q Consensus 442 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 503 (538)
|+.++++++.+.|.++.++..+|.+|..+|+++.|+++|.+++.+.|++..+...|+.+...
T Consensus 474 AI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 474 AIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIED 535 (611)
T ss_pred HHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999888888877665
No 30
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=5.6e-24 Score=190.62 Aligned_cols=419 Identities=17% Similarity=0.145 Sum_probs=320.7
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHhccCCcchHHHHHHHHHHHhcCCHHHHHHHHHHH------hccCCCc---------
Q 009278 5 AKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKT------VELKPDW--------- 69 (538)
Q Consensus 5 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a------l~~~p~~--------- 69 (538)
.+.+|.+++-.|+|..|....+.- ..+..+..+.+..+.|+..+.++++|+..+... +..+|.+
T Consensus 52 ~~~~aq~l~~~~~y~ra~~lit~~-~le~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~ 130 (611)
T KOG1173|consen 52 IYWLAQVLYLGRQYERAAHLITTY-KLEKRDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNS 130 (611)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHh-hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCc
Confidence 466888999999999988877765 556667889999999999999999999888732 1111111
Q ss_pred ----------hHHHHHHHHHHhhccCHHHHHHHHHhhhhcCCCcHHHHhhHHHHHHHHhhcccCCCCCCCCcccccccCC
Q 009278 70 ----------SKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGP 139 (538)
Q Consensus 70 ----------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (538)
...++.+|.+|..+.+.++|...|.+|+..++.+.++...+..........
T Consensus 131 ~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~~mlt~~E------------------- 191 (611)
T KOG1173|consen 131 AGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAKCFEAFEKLVSAHMLTAQE------------------- 191 (611)
T ss_pred ccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcchhH-------------------
Confidence 235678899999999999999999999999999999887776655443211
Q ss_pred chhhcccCCCCCCCcccHHHHHHHHHhhhcCCCchhhhhchHHHHHHHHHHHhhhcCCCCCCCccccccccCCCCCCCcc
Q 009278 140 EMWAKLTADPTTRSYLDQDDFRNMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSK 219 (538)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (538)
.+..+..-+... ....-...+..+..+......
T Consensus 192 -e~~ll~~l~~a~--------------------------~~~ed~e~l~~lyel~~~k~~-------------------- 224 (611)
T KOG1173|consen 192 -EFELLESLDLAM--------------------------LTKEDVERLEILYELKLCKNR-------------------- 224 (611)
T ss_pred -HHHHHhcccHHh--------------------------hhhhHHHHHHHHHHhhhhhhc--------------------
Confidence 000000000000 000000001111110000000
Q ss_pred ccccCCCCCCCCCCccccHHHHHHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCC
Q 009278 220 EETRKPESEPEPEPMELTEEEKEAKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGK 299 (538)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 299 (538)
+....+..-...+.......+.....+..++..++|.+..+..+..++.+|-+...+...--++...|+
T Consensus 225 -----------n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~ 293 (611)
T KOG1173|consen 225 -----------NEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGK 293 (611)
T ss_pred -----------cccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcc
Confidence 000000001122333446778888899999999999999999999999999887766555559999999
Q ss_pred HHHHHHHHHHHHHccccchhhHHHHHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCC--------hhHHHhhhhH
Q 009278 300 YEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRN--------PDTLKKLNEA 371 (538)
Q Consensus 300 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--------~~~~~~~~~~ 371 (538)
..+-...-.+.++..|+. +..|+..|..|...++ +.+|..+|.++..+++. +..+...+..
T Consensus 294 ~n~Lf~lsh~LV~~yP~~-------a~sW~aVg~YYl~i~k----~seARry~SKat~lD~~fgpaWl~fghsfa~e~Eh 362 (611)
T KOG1173|consen 294 SNKLFLLSHKLVDLYPSK-------ALSWFAVGCYYLMIGK----YSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEH 362 (611)
T ss_pred cchHHHHHHHHHHhCCCC-------CcchhhHHHHHHHhcC----cHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchH
Confidence 988888888999999998 4556666666666666 99999999999998887 3356677899
Q ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHhHHHHHHHHhCCchhHHHHHHHHHh
Q 009278 372 EKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIE 451 (538)
Q Consensus 372 ~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 451 (538)
++|+..|..+.++-|........+|.-|...+++.-|..+|.+|+.+.|.+|-++..+|.+.+..+.|.+|..+|+.++.
T Consensus 363 dQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~ 442 (611)
T KOG1173|consen 363 DQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALE 442 (611)
T ss_pred HHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999994
Q ss_pred c----CCC---chHHHHHHHHHHHHccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhccCCC
Q 009278 452 L----DPT---FSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDGVRRCVQQINKAGRGEL 512 (538)
Q Consensus 452 ~----~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~ 512 (538)
. .++ -...+.++|.++.+++.+++|+.+|++++.+.|.+..++..+|-++..+|+.+.|..
T Consensus 443 ~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid 510 (611)
T KOG1173|consen 443 VIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAID 510 (611)
T ss_pred HhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHH
Confidence 3 222 234689999999999999999999999999999999999999999999999998883
No 31
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.94 E-value=1.3e-25 Score=195.64 Aligned_cols=430 Identities=17% Similarity=0.203 Sum_probs=281.6
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHhccCCc-----chHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHHHHHh
Q 009278 7 AKGNAAFSSGDYEAAVRHFTEAISLSPD-----NHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHL 81 (538)
Q Consensus 7 ~~g~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 81 (538)
..|++++++.+|.+|+++|+-++..-|. ...++.++|..+.+.|+|+.|+..|+.+++..|+... -+.+..|++
T Consensus 242 nigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~~pn~~a-~~nl~i~~f 320 (840)
T KOG2003|consen 242 NIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEAPNFIA-ALNLIICAF 320 (840)
T ss_pred eecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhCccHHh-hhhhhhhhe
Confidence 4688999999999999999999998885 2467889999999999999999999999999997654 457778999
Q ss_pred hccCHHHHHHHHHhhhhcC--------------CCcHHHHhhHHHHHHHHhhcccCCCCCCCCcccccccCCchhhcccC
Q 009278 82 GLQDYIEAVNSYKKGLDID--------------PNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTA 147 (538)
Q Consensus 82 ~~~~~~~A~~~~~~al~~~--------------p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (538)
..|+-++-.+.|.+.+.+- |++.-....+-.- .+.+.++.....+.. .+.. ..-..
T Consensus 321 ~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd--~lk~~ek~~ka~aek---~i~t-----a~kii 390 (840)
T KOG2003|consen 321 AIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKND--HLKNMEKENKADAEK---AIIT-----AAKII 390 (840)
T ss_pred ecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhH--HHHHHHHhhhhhHHH---HHHH-----HHHHh
Confidence 9999999999999988651 1111111111100 000000000000000 0000 00000
Q ss_pred CCCCCCcccHHHHHHHHHhh----------hcCCCchhhhhchHHHHHHHHHHHhhhcCCCCCCCccccccccCCCCCCC
Q 009278 148 DPTTRSYLDQDDFRNMMKDI----------QRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPET 217 (538)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~l----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (538)
.|.+...+ ....+.+.+.+ ...-+....++..+++..+...+.-.....
T Consensus 391 apvi~~~f-a~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kd-------------------- 449 (840)
T KOG2003|consen 391 APVIAPDF-AAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKD-------------------- 449 (840)
T ss_pred ccccccch-hcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhcc--------------------
Confidence 00000000 00111111111 111222223444444444433332111000
Q ss_pred ccccccCCCCCCCCCCccccHHHHHHHHhHHHHHHHHHHHHHHHh--cccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 009278 218 SKEETRKPESEPEPEPMELTEEEKEAKERKEKALKEKEAGNAAYK--KKEFEKAIEHYSSALELDDEDISYLTNRAAVYL 295 (538)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 295 (538)
+.....+-.++..+++. -.++.+|..+-..++.++..++.++.+.|.+-+
T Consensus 450 ----------------------------nk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f 501 (840)
T KOG2003|consen 450 ----------------------------NKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAF 501 (840)
T ss_pred ----------------------------chhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceee
Confidence 01111222223333332 235566666666666666666666666666666
Q ss_pred HhCCHHHHHHHHHHHHHccccchhhHHHHHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCC--------hhHHHh
Q 009278 296 EMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRN--------PDTLKK 367 (538)
Q Consensus 296 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--------~~~~~~ 367 (538)
..|++++|.+.|+.++..+..+ ..+++++|..+..+++ .++|+++|-+.-.+-.+ ..++..
T Consensus 502 ~ngd~dka~~~ykeal~ndasc-------~ealfniglt~e~~~~----ldeald~f~klh~il~nn~evl~qianiye~ 570 (840)
T KOG2003|consen 502 ANGDLDKAAEFYKEALNNDASC-------TEALFNIGLTAEALGN----LDEALDCFLKLHAILLNNAEVLVQIANIYEL 570 (840)
T ss_pred ecCcHHHHHHHHHHHHcCchHH-------HHHHHHhcccHHHhcC----HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 6666666666666666544443 4556666666666666 66666666554332211 224445
Q ss_pred hhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHhHHHHHHHHhCCchhHHHHHH
Q 009278 368 LNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDAD 447 (538)
Q Consensus 368 ~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 447 (538)
+.+..+|++++.++..+-|+++.++..+|.+|-+.|+-.+|..++-......|.+.++.-.+|..|....-+++|+.+|+
T Consensus 571 led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~e 650 (840)
T KOG2003|consen 571 LEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFE 650 (840)
T ss_pred hhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 55556666666666669999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCchHHHHHHHHHHHHccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhh
Q 009278 448 KCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDGVRRCVQQINKA 507 (538)
Q Consensus 448 ~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 507 (538)
++--+.|+.......++.|+.+.|+|+.|.+.|+..-...|.+.+.+..|.++...+|-.
T Consensus 651 kaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 651 KAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred HHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccch
Confidence 999999999998999999999999999999999999999999999999999988777743
No 32
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.94 E-value=1.9e-23 Score=197.25 Aligned_cols=324 Identities=15% Similarity=0.169 Sum_probs=264.5
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHHHHHhhccCHHHHHHHHHhhhhcCCCcHHHHhhHHHHHH
Q 009278 36 HVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNEALKSGLADAKA 115 (538)
Q Consensus 36 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 115 (538)
...+...|..++..|++++|...+.++++.+|.++.+|+.||.||..+|+.+++...+-.|-.++|++.+.|..+
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~l----- 213 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRL----- 213 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHH-----
Confidence 456777888889999999999999999999999999999999999999999999999999999999988776655
Q ss_pred HHhhcccCCCCCCCCcccccccCCchhhcccCCCCCCCcccHHHHHHHHHhhhcCCCchhhhhchHHHHHHHHHHHhhhc
Q 009278 116 AASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRNMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKF 195 (538)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (538)
T Consensus 214 -------------------------------------------------------------------------------- 213 (895)
T KOG2076|consen 214 -------------------------------------------------------------------------------- 213 (895)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCccccccccCCCCCCCccccccCCCCCCCCCCccccHHHHHHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Q 009278 196 KGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKEAKERKEKALKEKEAGNAAYKKKEFEKAIEHYSS 275 (538)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 275 (538)
+....++|++++|.-+|.+
T Consensus 214 -------------------------------------------------------------adls~~~~~i~qA~~cy~r 232 (895)
T KOG2076|consen 214 -------------------------------------------------------------ADLSEQLGNINQARYCYSR 232 (895)
T ss_pred -------------------------------------------------------------HHHHHhcccHHHHHHHHHH
Confidence 4455667999999999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHHHHHHHhHHHHHHhhhcccChhHHHHHHHHH
Q 009278 276 ALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKA 355 (538)
Q Consensus 276 al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 355 (538)
+++.+|.+....+..+.+|.++|+...|...|.+++...| +..+...-.........+...++ -+.|++.+..+
T Consensus 233 AI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p--~~d~er~~d~i~~~~~~~~~~~~----~e~a~~~le~~ 306 (895)
T KOG2076|consen 233 AIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP--PVDIERIEDLIRRVAHYFITHNE----RERAAKALEGA 306 (895)
T ss_pred HHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC--chhHHHHHHHHHHHHHHHHHhhH----HHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999 33333334444555667777777 78899999998
Q ss_pred HhcCCC----------hhHHHhhhhHHHHHHHHHHHHH-----------------------------cCCCchHHHHHHH
Q 009278 356 LTEHRN----------PDTLKKLNEAEKAKKELEQQEI-----------------------------FDPKIADEEREKG 396 (538)
Q Consensus 356 ~~~~~~----------~~~~~~~~~~~~a~~~~~~~~~-----------------------------~~~~~~~~~~~la 396 (538)
+....+ ...+.....++.+......... ..++.+.....++
T Consensus 307 ~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~ic 386 (895)
T KOG2076|consen 307 LSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMIC 386 (895)
T ss_pred HhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhh
Confidence 884333 1244555667777665544433 0111122255666
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCC-CCchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCC-chHHHHHHHHHHHHccCHH
Q 009278 397 NEFFKQQKYPEAIQHYTESLRRNP-KDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPT-FSKGYTRKGAIQFFLKEYD 474 (538)
Q Consensus 397 ~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~ 474 (538)
.+..+.++..+++..+..--...| +++..+..++..+...|++.+|+.++..+....+. +..+|+.+|.||..+|.++
T Consensus 387 L~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e 466 (895)
T KOG2076|consen 387 LVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYE 466 (895)
T ss_pred hhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHH
Confidence 666677777777766644333234 45789999999999999999999999999987653 4679999999999999999
Q ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhccCC
Q 009278 475 KALETYQEGLKHDPQNQELLDGVRRCVQQINKAGRGE 511 (538)
Q Consensus 475 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~ 511 (538)
+|+++|++++.+.|++.++...|+.++.++|+.++|.
T Consensus 467 ~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~Ekal 503 (895)
T KOG2076|consen 467 EAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKAL 503 (895)
T ss_pred HHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHH
Confidence 9999999999999999999999999999999998666
No 33
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.94 E-value=2.7e-22 Score=199.60 Aligned_cols=430 Identities=9% Similarity=-0.007 Sum_probs=280.6
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHhccCCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHHHHHhhccCH
Q 009278 7 AKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDY 86 (538)
Q Consensus 7 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~ 86 (538)
....++...|++++|+..+++++...|.....+..+|.++...|++++|++.|+++++.+|+++.++..++.++...++.
T Consensus 73 dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~ 152 (822)
T PRK14574 73 DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRG 152 (822)
T ss_pred HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCH
Confidence 45556666677777777777777333333444444466777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHhhhhcCCCcHHHHhhHHHHHHHHhhcccCCCCCCCCcccccccCCchhhcccCCCCCCCcccHHHHHHHHHh
Q 009278 87 IEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRNMMKD 166 (538)
Q Consensus 87 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (538)
++|+..++++...+|.+... ..++.++...+.. ..++..+.+.
T Consensus 153 ~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~------------------------------------~~AL~~~ekl 195 (822)
T PRK14574 153 GVVLKQATELAERDPTVQNY-MTLSYLNRATDRN------------------------------------YDALQASSEA 195 (822)
T ss_pred HHHHHHHHHhcccCcchHHH-HHHHHHHHhcchH------------------------------------HHHHHHHHHH
Confidence 77777777777777775444 3333333222211 2356666666
Q ss_pred hhcCCCchhhhhchHHHHHHHHHH---HhhhcCCCCCCCccc-------cccccCCCCCCCccccccCCCCCCCCCCccc
Q 009278 167 IQRNPNNLNLYLKDQRVMQALGVL---LNVKFKGPTGGDDVE-------MQDEDAPKGPETSKEETRKPESEPEPEPMEL 236 (538)
Q Consensus 167 l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (538)
+..+|++...+......+...+.. ..+....++-....+ .+..... .... .... ..........++
T Consensus 196 l~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr-~a~~--~~~~-~~~r~~~~d~al 271 (822)
T PRK14574 196 VRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVR-MAVL--PTRS-ETERFDIADKAL 271 (822)
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHh-hccc--cccc-chhhHHHHHHHH
Confidence 666776666655433333322211 000000000000000 0000000 0000 0000 000000011122
Q ss_pred cHHHHHHH---HhH----HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHH
Q 009278 237 TEEEKEAK---ERK----EKALKEKEAGNAAYKKKEFEKAIEHYSSALELD-DEDISYLTNRAAVYLEMGKYEECIKDCD 308 (538)
Q Consensus 237 ~~~~~~~~---~~~----~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~ 308 (538)
......+. ..| ....+....-..+...|++.+++..|+.+.... |-...+....|..|...+++++|+.+|.
T Consensus 272 a~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~ 351 (822)
T PRK14574 272 ADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILS 351 (822)
T ss_pred HHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 22222222 112 224455566677788999999999999987654 3356788899999999999999999999
Q ss_pred HHHHccccchhhHHHHHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCCh-hHHHhhhhHHHHHHHHHHHHHcCCC
Q 009278 309 KAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNP-DTLKKLNEAEKAKKELEQQEIFDPK 387 (538)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~~~ 387 (538)
.++...|........ ......+...+...++ +++|..++++.....|.. ..+..-.+ .-+|+
T Consensus 352 ~~~~~~~~~~~~~~~-~~~~~~L~yA~ld~e~----~~~A~~~l~~~~~~~p~~~~~~~~~~~------------~pn~d 414 (822)
T PRK14574 352 SLYYSDGKTFRNSDD-LLDADDLYYSLNESEQ----LDKAYQFAVNYSEQTPYQVGVYGLPGK------------EPNDD 414 (822)
T ss_pred HHhhccccccCCCcc-hHHHHHHHHHHHhccc----HHHHHHHHHHHHhcCCcEEeccCCCCC------------CCCcc
Confidence 998866421000000 1112344555666666 999999999999855410 00000000 04677
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCchHHHHHHHHHH
Q 009278 388 IADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQ 467 (538)
Q Consensus 388 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 467 (538)
..+....++.++...|++.+|++.+++.+...|.++.++..+|.++...|.+..|...++.+..++|++..+...+|.++
T Consensus 415 ~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~a 494 (822)
T PRK14574 415 WIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETA 494 (822)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHH
Confidence 78888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHccCHHHHHHHHHHHhccCCCCHHHH
Q 009278 468 FFLKEYDKALETYQEGLKHDPQNQELL 494 (538)
Q Consensus 468 ~~~g~~~~A~~~~~~al~~~p~~~~~~ 494 (538)
..+|++.+|......+++..|+++.+.
T Consensus 495 l~l~e~~~A~~~~~~l~~~~Pe~~~~~ 521 (822)
T PRK14574 495 MALQEWHQMELLTDDVISRSPEDIPSQ 521 (822)
T ss_pred HhhhhHHHHHHHHHHHHhhCCCchhHH
Confidence 999999999999999999999998665
No 34
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=2.5e-24 Score=185.37 Aligned_cols=316 Identities=27% Similarity=0.421 Sum_probs=252.5
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHHHhccCCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHHHHHh
Q 009278 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHL 81 (538)
Q Consensus 2 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 81 (538)
|+....+|..++...+|.+|+..|..|++..|+++..|.+.+.+++..|++++|.-..++.++++|..+..+...+.|+.
T Consensus 49 Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~ 128 (486)
T KOG0550|consen 49 AEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHL 128 (486)
T ss_pred HHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhh
Confidence 56778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCHHHHHHHHHhhhhcCCCcHHHHhhHHHHHHHHhhcccCCCCCCCCcccccccCCchhhcccCCCCCCCcccHHHHH
Q 009278 82 GLQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFR 161 (538)
Q Consensus 82 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (538)
.+++..+|...++ +..+. ..+..+.
T Consensus 129 a~~~~i~A~~~~~--------~~~~~-~~anal~---------------------------------------------- 153 (486)
T KOG0550|consen 129 ALSDLIEAEEKLK--------SKQAY-KAANALP---------------------------------------------- 153 (486)
T ss_pred hhHHHHHHHHHhh--------hhhhh-HHhhhhh----------------------------------------------
Confidence 9999999998887 11111 0000000
Q ss_pred HHHHhhhcCCCchhhhhchHHHHHHHHHHHhhhcCCCCCCCccccccccCCCCCCCccccccCCCCCCCCCCccccHHHH
Q 009278 162 NMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEK 241 (538)
Q Consensus 162 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (538)
.....+..+
T Consensus 154 ~~~~~~~s~----------------------------------------------------------------------- 162 (486)
T KOG0550|consen 154 TLEKLAPSH----------------------------------------------------------------------- 162 (486)
T ss_pred hhhcccccc-----------------------------------------------------------------------
Confidence 000000000
Q ss_pred HHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhH
Q 009278 242 EAKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDF 321 (538)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 321 (538)
...|.-..+....+.++...|++++|...--..+++++.+.++++..|.++...++.+.|+..|++++.++|++....
T Consensus 163 --s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk 240 (486)
T KOG0550|consen 163 --SREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSK 240 (486)
T ss_pred --cCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHH
Confidence 000233445566688889999999999999999999999999999999999999999999999999999999863321
Q ss_pred HHHHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHh
Q 009278 322 KMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFK 401 (538)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~ 401 (538)
.++ ..|+....+..-|+-.++
T Consensus 241 ----~~~-------------------------------------------------------~~~k~le~~k~~gN~~fk 261 (486)
T KOG0550|consen 241 ----SAS-------------------------------------------------------MMPKKLEVKKERGNDAFK 261 (486)
T ss_pred ----hHh-------------------------------------------------------hhHHHHHHHHhhhhhHhh
Confidence 110 223334456667888889
Q ss_pred cCChHHHHHHHHHHHhcCCCC----chhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCchHHHHHHHHHHHHccCHHHHH
Q 009278 402 QQKYPEAIQHYTESLRRNPKD----PRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKAL 477 (538)
Q Consensus 402 ~~~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 477 (538)
.|+|..|.++|..+|.++|++ ...|.+++.+..++|+..+|+..++.+++++|....++...|.|+..+++|++|+
T Consensus 262 ~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV 341 (486)
T KOG0550|consen 262 NGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAV 341 (486)
T ss_pred ccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999976 4568888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCCHHHHHHHHHHHHHhh
Q 009278 478 ETYQEGLKHDPQNQELLDGVRRCVQQIN 505 (538)
Q Consensus 478 ~~~~~al~~~p~~~~~~~~l~~~~~~~~ 505 (538)
+.|+++++...+ .+....+..+...+.
T Consensus 342 ~d~~~a~q~~~s-~e~r~~l~~A~~aLk 368 (486)
T KOG0550|consen 342 EDYEKAMQLEKD-CEIRRTLREAQLALK 368 (486)
T ss_pred HHHHHHHhhccc-cchHHHHHHHHHHHH
Confidence 999999988766 555555555444443
No 35
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.92 E-value=4.3e-23 Score=180.01 Aligned_cols=458 Identities=15% Similarity=0.133 Sum_probs=327.8
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHhc--cCCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC-----chHHHHHH
Q 009278 4 EAKAKGNAAFSSGDYEAAVRHFTEAIS--LSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPD-----WSKGYSRL 76 (538)
Q Consensus 4 ~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~l 76 (538)
.++.++..|-...-+.+|+..|+-+++ ..|+....-.++|.++++..+|.+|+++|+-++..-|. ...++..+
T Consensus 203 vl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~ni 282 (840)
T KOG2003|consen 203 VLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNI 282 (840)
T ss_pred HHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhc
Confidence 578899999999999999999998876 46888888899999999999999999999999998885 24677889
Q ss_pred HHHHhhccCHHHHHHHHHhhhhcCCCcHHHHhhHHHHHHHHhhcccCCCCCCCCcccccccCCchhhcccCCCCCCCccc
Q 009278 77 GAAHLGLQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLD 156 (538)
Q Consensus 77 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (538)
|..+.+.|+|+.|+..|....+..|+...++... .++...|..+..+ ..+...+. ++..+....++.
T Consensus 283 gvtfiq~gqy~dainsfdh~m~~~pn~~a~~nl~-i~~f~i~d~ekmk-----eaf~kli~-------ip~~~dddkyi~ 349 (840)
T KOG2003|consen 283 GVTFIQAGQYDDAINSFDHCMEEAPNFIAALNLI-ICAFAIGDAEKMK-----EAFQKLID-------IPGEIDDDKYIK 349 (840)
T ss_pred CeeEEecccchhhHhhHHHHHHhCccHHhhhhhh-hhheecCcHHHHH-----HHHHHHhc-------CCCCCCcccccC
Confidence 9999999999999999999999999877665433 3333332221100 00000000 011111111110
Q ss_pred HHHHHHHHHhhhcCCCchhhhhchHHHHHHHHHHHhhhcCCCCCCCccccccccCCCCCCCccccccCCCCCCCCC-Ccc
Q 009278 157 QDDFRNMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPE-PME 235 (538)
Q Consensus 157 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 235 (538)
.. .+|++. ++...--...+..+... ...+.++++.-.. +-+.....+. ...
T Consensus 350 ~~----------ddp~~~--ll~eai~nd~lk~~ek~------~ka~aek~i~ta~----------kiiapvi~~~fa~g 401 (840)
T KOG2003|consen 350 EK----------DDPDDN--LLNEAIKNDHLKNMEKE------NKADAEKAIITAA----------KIIAPVIAPDFAAG 401 (840)
T ss_pred Cc----------CCcchH--HHHHHHhhHHHHHHHHh------hhhhHHHHHHHHH----------HHhccccccchhcc
Confidence 00 000000 00000000000000000 0000000000000 0000000000 000
Q ss_pred ccH---HHHHHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHh--CCHHHHHHHHHH
Q 009278 236 LTE---EEKEAKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDED-ISYLTNRAAVYLEM--GKYEECIKDCDK 309 (538)
Q Consensus 236 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~--~~~~~A~~~~~~ 309 (538)
-.. ..+.....+-..+.-...+..++++|+++.|++.++-.-+.+... ..+-.++..+++.+ .++..|..+...
T Consensus 402 ~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~ 481 (840)
T KOG2003|consen 402 CDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADI 481 (840)
T ss_pred cHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHH
Confidence 011 111222233444556777889999999999999988766655443 23455666666664 378899999999
Q ss_pred HHHccccchhhHHHHHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCCh--------hHHHhhhhHHHHHHHHHHH
Q 009278 310 AVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNP--------DTLKKLNEAEKAKKELEQQ 381 (538)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~ 381 (538)
++.++.-+ +.++.+.|.+.+..|+ +++|.+.|+.++.....- -.+..+|++++|+.+|-+.
T Consensus 482 aln~dryn-------~~a~~nkgn~~f~ngd----~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~kl 550 (840)
T KOG2003|consen 482 ALNIDRYN-------AAALTNKGNIAFANGD----LDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKL 550 (840)
T ss_pred HhcccccC-------HHHhhcCCceeeecCc----HHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHH
Confidence 99988766 6788888998888888 999999999999865442 2457789999999999999
Q ss_pred HHcCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCchHHHH
Q 009278 382 EIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYT 461 (538)
Q Consensus 382 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 461 (538)
..+--++.+++..++.+|....+..+|++++.++..+-|++|.++..+|.+|-+.|+-.+|.+++-......|.+.++.-
T Consensus 551 h~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~ie 630 (840)
T KOG2003|consen 551 HAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIE 630 (840)
T ss_pred HHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHH
Confidence 88888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhccCCCC
Q 009278 462 RKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDGVRRCVQQINKAGRGELS 513 (538)
Q Consensus 462 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~ 513 (538)
.+|..|....-+++|+.+|+++--+.|+.......++.|+.+.|++++|...
T Consensus 631 wl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~ 682 (840)
T KOG2003|consen 631 WLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDL 682 (840)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHH
Confidence 9999999999999999999999999999999999999999999999988744
No 36
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.92 E-value=1.3e-21 Score=178.26 Aligned_cols=351 Identities=12% Similarity=0.027 Sum_probs=253.9
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHhccCCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHHHHHhhc
Q 009278 4 EAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGL 83 (538)
Q Consensus 4 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 83 (538)
.|..-+..+...+-++-|...|..+++..|....+|...+..-..-|..++-...+++++...|.....|++.+.-+...
T Consensus 518 tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~a 597 (913)
T KOG0495|consen 518 TWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKA 597 (913)
T ss_pred HHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhc
Confidence 46677888888888889999999999999988888888888888888888888889999999998888888888888888
Q ss_pred cCHHHHHHHHHhhhhcCCCcHHHHhhHHHHHHHHhhcccCCCCCCCCcccccccCCchhhcccCCCCCCCcccHHHHHHH
Q 009278 84 QDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRNM 163 (538)
Q Consensus 84 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (538)
|+...|...+..+++.+|++.+.|..-..+.....+.+ .+
T Consensus 598 gdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~e----------------------------------------ra 637 (913)
T KOG0495|consen 598 GDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELE----------------------------------------RA 637 (913)
T ss_pred CCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHH----------------------------------------HH
Confidence 99999999999999999998888876655533322211 11
Q ss_pred HHhhhcCCCchhhhhchHHHHHHHHHHHhhhcCCCCCCCccccccccCCCCCCCccccccCCCCCCCCCCccccHHHHHH
Q 009278 164 MKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKEA 243 (538)
Q Consensus 164 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (538)
...+. ...
T Consensus 638 R~lla-----------------------kar------------------------------------------------- 645 (913)
T KOG0495|consen 638 RDLLA-----------------------KAR------------------------------------------------- 645 (913)
T ss_pred HHHHH-----------------------HHh-------------------------------------------------
Confidence 11110 000
Q ss_pred HHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHH
Q 009278 244 KERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKM 323 (538)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 323 (538)
.......+|+.-+.....+++.++|+.+++++++..|+....|..+|.++.++++.+.|...|...++..|.+.+.|..
T Consensus 646 -~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWll 724 (913)
T KOG0495|consen 646 -SISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLL 724 (913)
T ss_pred -ccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHH
Confidence 0112456677778888889999999999999999999999999999999999999999999999999999998666544
Q ss_pred HHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcC
Q 009278 324 IARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQ 403 (538)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 403 (538)
++.. -...+. .-.|...++++.- .+|.+...|.....+-.+.|
T Consensus 725 Lakl-------eEk~~~----~~rAR~ildrarl--------------------------kNPk~~~lwle~Ir~ElR~g 767 (913)
T KOG0495|consen 725 LAKL-------EEKDGQ----LVRARSILDRARL--------------------------KNPKNALLWLESIRMELRAG 767 (913)
T ss_pred HHHH-------HHHhcc----hhhHHHHHHHHHh--------------------------cCCCcchhHHHHHHHHHHcC
Confidence 4433 333333 7778777877777 66777777777777777777
Q ss_pred ChHHHHHHHHHHHhcCCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCchHHHHHHHHHHHHccCHHHHHHHHHHH
Q 009278 404 KYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEG 483 (538)
Q Consensus 404 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 483 (538)
+.+.|...+.++++..|.+..+|..-..+.-.-++-..++. +++....++.++...|.+++...++++|.++|.++
T Consensus 768 n~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~D----ALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ra 843 (913)
T KOG0495|consen 768 NKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSID----ALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERA 843 (913)
T ss_pred CHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHH----HHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777666666554444444444333333 33333555666666666666666666666666666
Q ss_pred hccCCCCHHHHHHHHHHHHHhhhhc
Q 009278 484 LKHDPQNQELLDGVRRCVQQINKAG 508 (538)
Q Consensus 484 l~~~p~~~~~~~~l~~~~~~~~~~~ 508 (538)
++.+|++.++|..+-..+...|.-+
T Consensus 844 vk~d~d~GD~wa~fykfel~hG~ee 868 (913)
T KOG0495|consen 844 VKKDPDNGDAWAWFYKFELRHGTEE 868 (913)
T ss_pred HccCCccchHHHHHHHHHHHhCCHH
Confidence 6666666666666666666666443
No 37
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.92 E-value=1.9e-21 Score=180.79 Aligned_cols=406 Identities=14% Similarity=0.071 Sum_probs=289.4
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHhccCCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhccC--CCchHHHHHHHH-HH
Q 009278 4 EAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELK--PDWSKGYSRLGA-AH 80 (538)
Q Consensus 4 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~-~~ 80 (538)
.|-.....+...|+|+.+.+.|++++...-...+.|+.++.++...|.-..|+...+..+... |.++..+..-+. |.
T Consensus 325 i~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~ 404 (799)
T KOG4162|consen 325 IFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCI 404 (799)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHH
Confidence 345566677788999999999999988777778999999999999999999999999999888 777766655554 55
Q ss_pred hhccCHHHHHHHHHhhhhcCCC-----cHHHHhhHHHHHHHHhhcccCCCCCCCCcccccccCCchhhcccCCCCCCCcc
Q 009278 81 LGLQDYIEAVNSYKKGLDIDPN-----NEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYL 155 (538)
Q Consensus 81 ~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (538)
...+..++++.+-.+++..... .+..+..++.+|...... ...+..+...
T Consensus 405 e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~-------------------------a~~~seR~~~ 459 (799)
T KOG4162|consen 405 ERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQ-------------------------ANLKSERDAL 459 (799)
T ss_pred hchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhc-------------------------CCChHHHHHH
Confidence 6678999999999999874321 123344444444333111 0000111112
Q ss_pred cHHHHHHHHHhhhcCCCchhhhhchHHHHHHHHHHHhhhcCCCCCCCccccccccCCCCCCCccccccCCCCCCCCCCcc
Q 009278 156 DQDDFRNMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPME 235 (538)
Q Consensus 156 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (538)
..+.+..+
T Consensus 460 h~kslqal------------------------------------------------------------------------ 467 (799)
T KOG4162|consen 460 HKKSLQAL------------------------------------------------------------------------ 467 (799)
T ss_pred HHHHHHHH------------------------------------------------------------------------
Confidence 22333333
Q ss_pred ccHHHHHHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc
Q 009278 236 LTEEEKEAKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELD-DEDISYLTNRAAVYLEMGKYEECIKDCDKAVERG 314 (538)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 314 (538)
+.+...++.++.+.+.++..|...++.+.|..+.+++++.+ .+++.+|..++.++...+++.+|+...+.++...
T Consensus 468 ----e~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~ 543 (799)
T KOG4162|consen 468 ----EEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF 543 (799)
T ss_pred ----HHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh
Confidence 33334444566777888999999999999999999999994 4578999999999999999999999999999988
Q ss_pred ccchhhHHHHHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCC----------hh-------HHHhhhhHHHHHHH
Q 009278 315 RELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRN----------PD-------TLKKLNEAEKAKKE 377 (538)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----------~~-------~~~~~~~~~~a~~~ 377 (538)
|++..... ....+-...++ .++|+......+..... .. ......+..++.+.
T Consensus 544 ~~N~~l~~-------~~~~i~~~~~~----~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~ 612 (799)
T KOG4162|consen 544 GDNHVLMD-------GKIHIELTFND----REEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAIST 612 (799)
T ss_pred hhhhhhch-------hhhhhhhhccc----HHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchh
Confidence 87632221 11122222333 66666666655554331 00 00111111122221
Q ss_pred HHHHHH--------c-----------CCCc-------hHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHhHHHH
Q 009278 378 LEQQEI--------F-----------DPKI-------ADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAA 431 (538)
Q Consensus 378 ~~~~~~--------~-----------~~~~-------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~ 431 (538)
...+.. . .|.. ...|...+..+...++.++|..++.++-.++|..+..|+..|.
T Consensus 613 sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~ 692 (799)
T KOG4162|consen 613 SRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGL 692 (799)
T ss_pred hHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhH
Confidence 111111 0 1111 2456677888888888999999999999999999999999999
Q ss_pred HHHHhCCchhHHHHHHHHHhcCCCchHHHHHHHHHHHHccCHHHHHH--HHHHHhccCCCCHHHHHHHHHHHHHhhhhcc
Q 009278 432 CYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALE--TYQEGLKHDPQNQELLDGVRRCVQQINKAGR 509 (538)
Q Consensus 432 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~--~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~ 509 (538)
++...|++.+|...|..++.++|+++.....+|.++...|+..-|.. .+..+++++|.++++|+.+|.+..+.|+..+
T Consensus 693 ~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~ 772 (799)
T KOG4162|consen 693 LLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQ 772 (799)
T ss_pred HHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHH
Confidence 99999999999999999999999999999999999999998888888 8999999999999999999999999999999
Q ss_pred CCCChHHHHHHH
Q 009278 510 GELSPEELKERQ 521 (538)
Q Consensus 510 a~~~~~~~~~~~ 521 (538)
|..||..+.+.-
T Consensus 773 Aaecf~aa~qLe 784 (799)
T KOG4162|consen 773 AAECFQAALQLE 784 (799)
T ss_pred HHHHHHHHHhhc
Confidence 988866555443
No 38
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.92 E-value=2.2e-21 Score=183.10 Aligned_cols=233 Identities=11% Similarity=0.035 Sum_probs=131.9
Q ss_pred HHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHHHHHHHhHHHHH
Q 009278 257 GNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALV 336 (538)
Q Consensus 257 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (538)
+.++...|+++.|...++++++..|+++.++..++.++...|++++|...+.+..+....++.... ...........
T Consensus 160 a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~---~l~~~a~~~~l 236 (409)
T TIGR00540 160 TRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFA---DLEQKAEIGLL 236 (409)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHH---HHHHHHHHHHH
Confidence 344555566666666666666666666666666666666666666666666666655333222221 11111111112
Q ss_pred HhhhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 009278 337 KMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESL 416 (538)
Q Consensus 337 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 416 (538)
..+. .+++...+..+....|. ..++++..+..+|..+...|++++|+..+++++
T Consensus 237 ~~~~----~~~~~~~L~~~~~~~p~----------------------~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l 290 (409)
T TIGR00540 237 DEAM----ADEGIDGLLNWWKNQPR----------------------HRRHNIALKIALAEHLIDCDDHDSAQEIIFDGL 290 (409)
T ss_pred HHHH----HhcCHHHHHHHHHHCCH----------------------HHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 2233 44455555555552221 223456666666666666666666666666666
Q ss_pred hcCCCCchhH--hHHHHHHHHhCCchhHHHHHHHHHhcCCCch--HHHHHHHHHHHHccCHHHHHHHHH--HHhccCCCC
Q 009278 417 RRNPKDPRTY--SNRAACYTKLGAMPEGLKDADKCIELDPTFS--KGYTRKGAIQFFLKEYDKALETYQ--EGLKHDPQN 490 (538)
Q Consensus 417 ~~~~~~~~~~--~~la~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~l~~~~~~~g~~~~A~~~~~--~al~~~p~~ 490 (538)
+..|++.... ..........++.+.+++.++++++.+|+++ .....+|+++++.|++++|.++|+ .+++..|++
T Consensus 291 ~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~ 370 (409)
T TIGR00540 291 KKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDA 370 (409)
T ss_pred hhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCH
Confidence 6666655321 2222223334556666666666666666666 666666666666666666666666 455566655
Q ss_pred HHHHHHHHHHHHHhhhhccCCCChHHHHH
Q 009278 491 QELLDGVRRCVQQINKAGRGELSPEELKE 519 (538)
Q Consensus 491 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 519 (538)
.. ...++.++.++|+.++|...++++..
T Consensus 371 ~~-~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 371 ND-LAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HH-HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44 33666666666666666655544433
No 39
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.92 E-value=3.3e-24 Score=192.71 Aligned_cols=268 Identities=24% Similarity=0.279 Sum_probs=104.0
Q ss_pred cCCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CCCchHHHHHHHHHHhhccCHHHHHHHHHhhhhcCCCcHHHHh
Q 009278 31 LSPDNHVLYSNRSAAHASLHNYADALADAKKTVEL--KPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNEALKS 108 (538)
Q Consensus 31 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 108 (538)
..|. ...+.+|.+++..|++++|++.+.+.+.. .|+++..|..+|.+....++++.|+..|++++..++.++....
T Consensus 5 ~~~~--~~~l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~ 82 (280)
T PF13429_consen 5 FGPS--EEALRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYE 82 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccc--cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 4454 23346688888889999999988665544 4788888888888888889999999999888887766544322
Q ss_pred hHHHHHHHHhhcccCCCCCCCCcccccccCCchhhcccCCCCCCCcccHHHHHHHHHhhhcCCCchhhhhchHHHHHHHH
Q 009278 109 GLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRNMMKDIQRNPNNLNLYLKDQRVMQALG 188 (538)
Q Consensus 109 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 188 (538)
.+
T Consensus 83 ~l------------------------------------------------------------------------------ 84 (280)
T PF13429_consen 83 RL------------------------------------------------------------------------------ 84 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cc------------------------------------------------------------------------------
Confidence 22
Q ss_pred HHHhhhcCCCCCCCccccccccCCCCCCCccccccCCCCCCCCCCccccHHHHHHHHhHHHHHHHHHHHHHHHhcccHHH
Q 009278 189 VLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKEAKERKEKALKEKEAGNAAYKKKEFEK 268 (538)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (538)
+.+ ...+++++
T Consensus 85 --------------------------------------------------------------------~~l-~~~~~~~~ 95 (280)
T PF13429_consen 85 --------------------------------------------------------------------IQL-LQDGDPEE 95 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------ccc-cccccccc
Confidence 222 45678888
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--ccchhhHHHHHHHHHHhHHHHHHhhhcccChh
Q 009278 269 AIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERG--RELRSDFKMIARALTRKGTALVKMAKCSKDYE 346 (538)
Q Consensus 269 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (538)
|+.++.++.+..+ ++..+.....++...++++++...++++.... +.+ ...+...|.++...|+ ++
T Consensus 96 A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~-------~~~~~~~a~~~~~~G~----~~ 163 (280)
T PF13429_consen 96 ALKLAEKAYERDG-DPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDS-------ARFWLALAEIYEQLGD----PD 163 (280)
T ss_dssp -----------------------H-HHHTT-HHHHHHHHHHHHH-T---T--------HHHHHHHHHHHHHCCH----HH
T ss_pred ccccccccccccc-ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCC-------HHHHHHHHHHHHHcCC----HH
Confidence 8888888777653 45666677778888888888888888876533 222 4556666777776666 77
Q ss_pred HHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhH
Q 009278 347 PAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTY 426 (538)
Q Consensus 347 ~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 426 (538)
+|+..|++++. .+|+++.+...++.++...|+++++...+....+..|.++..+
T Consensus 164 ~A~~~~~~al~--------------------------~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~ 217 (280)
T PF13429_consen 164 KALRDYRKALE--------------------------LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLW 217 (280)
T ss_dssp HHHHHHHHHHH--------------------------H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHC
T ss_pred HHHHHHHHHHH--------------------------cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHH
Confidence 78777777777 7777888888888888888888888888877777778888888
Q ss_pred hHHHHHHHHhCCchhHHHHHHHHHhcCCCchHHHHHHHHHHHHccCHHHHHHHHHHHhc
Q 009278 427 SNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLK 485 (538)
Q Consensus 427 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 485 (538)
..+|.++..+|++++|+.+|+++++.+|+++.++..+|.++...|+.++|..++++++.
T Consensus 218 ~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 218 DALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-----------------
T ss_pred HHHHHHhcccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 88888888888888888888888888888888888888888888888888888887765
No 40
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.91 E-value=2e-21 Score=183.42 Aligned_cols=304 Identities=11% Similarity=-0.004 Sum_probs=252.6
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHHHhccCCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCch-HHHHHHHHHHh
Q 009278 3 DEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWS-KGYSRLGAAHL 81 (538)
Q Consensus 3 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~ 81 (538)
......|...+..|+|+.|.+.+.++.+..|+....+...|.+...+|+++.|..++.++.+..|++. .+....+.++.
T Consensus 85 ~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l 164 (409)
T TIGR00540 85 QKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILL 164 (409)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHH
Confidence 34567899999999999999999999999998888888889999999999999999999999999875 46666799999
Q ss_pred hccCHHHHHHHHHhhhhcCCCcHHHHhhHHHHHHHHhhcccCCCCCCCCcccccccCCchhhcccCCCCCCCcccHHHHH
Q 009278 82 GLQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFR 161 (538)
Q Consensus 82 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (538)
..|++++|...++++++..|+++.
T Consensus 165 ~~~~~~~Al~~l~~l~~~~P~~~~-------------------------------------------------------- 188 (409)
T TIGR00540 165 AQNELHAARHGVDKLLEMAPRHKE-------------------------------------------------------- 188 (409)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHH--------------------------------------------------------
Confidence 999999999999999999888653
Q ss_pred HHHHhhhcCCCchhhhhchHHHHHHHHHHHhhhcCCCCCCCccccccccCCCCCCCccccccCCCCCCCCCCccccHHHH
Q 009278 162 NMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEK 241 (538)
Q Consensus 162 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (538)
T Consensus 189 -------------------------------------------------------------------------------- 188 (409)
T TIGR00540 189 -------------------------------------------------------------------------------- 188 (409)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHH----HHHHHHHHhCCHHHHHHHHHHHHHccccc
Q 009278 242 EAKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLT----NRAAVYLEMGKYEECIKDCDKAVERGREL 317 (538)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~----~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 317 (538)
++..++.++...|++++|.+.+.+..+..+.++.... ....-....+..+++...+.++....|..
T Consensus 189 ----------~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~ 258 (409)
T TIGR00540 189 ----------VLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRH 258 (409)
T ss_pred ----------HHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHH
Confidence 3679999999999999999999999987555443322 22222345556667777898888887754
Q ss_pred hhhHHHHHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHH--HHH
Q 009278 318 RSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEE--REK 395 (538)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~l 395 (538)
.... ..++...+..+...|+ +++|...++++++ ..|++.... ...
T Consensus 259 ~~~~---~~l~~~~a~~l~~~g~----~~~A~~~l~~~l~--------------------------~~pd~~~~~~~~l~ 305 (409)
T TIGR00540 259 RRHN---IALKIALAEHLIDCDD----HDSAQEIIFDGLK--------------------------KLGDDRAISLPLCL 305 (409)
T ss_pred HhCC---HHHHHHHHHHHHHCCC----hHHHHHHHHHHHh--------------------------hCCCcccchhHHHH
Confidence 3222 6788889999999988 9999999999998 666666431 333
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCc--hhHhHHHHHHHHhCCchhHHHHHH--HHHhcCCCchHHHHHHHHHHHHcc
Q 009278 396 GNEFFKQQKYPEAIQHYTESLRRNPKDP--RTYSNRAACYTKLGAMPEGLKDAD--KCIELDPTFSKGYTRKGAIQFFLK 471 (538)
Q Consensus 396 a~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~la~~~~~~~~~~~A~~~~~--~al~~~p~~~~~~~~l~~~~~~~g 471 (538)
.......++.+.+++.++++++..|+++ ..+..+|+++.+.|++++|.++|+ .+++..|+... +..+|.++.+.|
T Consensus 306 ~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g 384 (409)
T TIGR00540 306 PIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAG 384 (409)
T ss_pred HhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcC
Confidence 4444556889999999999999999999 889999999999999999999999 67788898655 569999999999
Q ss_pred CHHHHHHHHHHHhcc
Q 009278 472 EYDKALETYQEGLKH 486 (538)
Q Consensus 472 ~~~~A~~~~~~al~~ 486 (538)
+.++|.++|++++..
T Consensus 385 ~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 385 DKAEAAAMRQDSLGL 399 (409)
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999998764
No 41
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.91 E-value=5.7e-22 Score=166.84 Aligned_cols=304 Identities=14% Similarity=0.134 Sum_probs=253.7
Q ss_pred CCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHHHHHhhccCHHHHHHHHHhhhhcCCCcHHHHhhHH
Q 009278 32 SPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNEALKSGLA 111 (538)
Q Consensus 32 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 111 (538)
+|.+..-.+.+|..++..|++..|+..|..+++.+|++..+++.+|.+|+.+|+..-|+..+.+++++.|+...+
T Consensus 34 ~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~A----- 108 (504)
T KOG0624|consen 34 SPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAA----- 108 (504)
T ss_pred CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHH-----
Confidence 556778889999999999999999999999999999999999999999999999999999999999998875443
Q ss_pred HHHHHHhhcccCCCCCCCCcccccccCCchhhcccCCCCCCCcccHHHHHHHHHhhhcCCCchhhhhchHHHHHHHHHHH
Q 009278 112 DAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRNMMKDIQRNPNNLNLYLKDQRVMQALGVLL 191 (538)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 191 (538)
T Consensus 109 -------------------------------------------------------------------------------- 108 (504)
T KOG0624|consen 109 -------------------------------------------------------------------------------- 108 (504)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhcCCCCCCCccccccccCCCCCCCccccccCCCCCCCCCCccccHHHHHHHHhHHHHHHHHHHHHHHHhcccHHHHHH
Q 009278 192 NVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKEAKERKEKALKEKEAGNAAYKKKEFEKAIE 271 (538)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 271 (538)
....|.+++++|++++|..
T Consensus 109 -------------------------------------------------------------RiQRg~vllK~Gele~A~~ 127 (504)
T KOG0624|consen 109 -------------------------------------------------------------RIQRGVVLLKQGELEQAEA 127 (504)
T ss_pred -------------------------------------------------------------HHHhchhhhhcccHHHHHH
Confidence 3345788899999999999
Q ss_pred HHHHHHhhCCCCH---HH------------HHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHHHHHHHhHHHHH
Q 009278 272 HYSSALELDDEDI---SY------------LTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALV 336 (538)
Q Consensus 272 ~~~~al~~~p~~~---~~------------~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (538)
-|..++..+|++. ++ +......+...|+...|+.....++++.|=+ +..+...+.+|.
T Consensus 128 DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wd-------a~l~~~Rakc~i 200 (504)
T KOG0624|consen 128 DFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWD-------ASLRQARAKCYI 200 (504)
T ss_pred HHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcch-------hHHHHHHHHHHH
Confidence 9999999999653 22 2223344556789999999999999998876 566666677777
Q ss_pred HhhhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 009278 337 KMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESL 416 (538)
Q Consensus 337 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 416 (538)
..+. +..|+..++.+-+ +..++.+.++.++.+++..|+.+.++...+.++
T Consensus 201 ~~~e----~k~AI~Dlk~ask--------------------------Ls~DnTe~~ykis~L~Y~vgd~~~sL~~iRECL 250 (504)
T KOG0624|consen 201 AEGE----PKKAIHDLKQASK--------------------------LSQDNTEGHYKISQLLYTVGDAENSLKEIRECL 250 (504)
T ss_pred hcCc----HHHHHHHHHHHHh--------------------------ccccchHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 7777 8899888888887 788899999999999999999999999999999
Q ss_pred hcCCCCchhHh------------HHHHHHHHhCCchhHHHHHHHHHhcCCCchHH----HHHHHHHHHHccCHHHHHHHH
Q 009278 417 RRNPKDPRTYS------------NRAACYTKLGAMPEGLKDADKCIELDPTFSKG----YTRKGAIQFFLKEYDKALETY 480 (538)
Q Consensus 417 ~~~~~~~~~~~------------~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~----~~~l~~~~~~~g~~~~A~~~~ 480 (538)
+++|++-..+- .-+.-....++|.++++..++.++.+|..+.+ ...+..|+...|++.+|+...
T Consensus 251 KldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC 330 (504)
T KOG0624|consen 251 KLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQC 330 (504)
T ss_pred ccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHH
Confidence 99998754321 12233456788999999999999999985543 345677888999999999999
Q ss_pred HHHhccCCCCHHHHHHHHHHHHHhhhhccCCCChHHHH
Q 009278 481 QEGLKHDPQNQELLDGVRRCVQQINKAGRGELSPEELK 518 (538)
Q Consensus 481 ~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 518 (538)
.+++.++|++.+++...+.++..-..++.|...|+++.
T Consensus 331 ~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~ 368 (504)
T KOG0624|consen 331 KEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKAL 368 (504)
T ss_pred HHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 99999999999999999999998888888875555443
No 42
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=3.6e-21 Score=165.97 Aligned_cols=332 Identities=15% Similarity=0.094 Sum_probs=272.2
Q ss_pred HHhccCCcchHHH---HHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHHHHHhhccCHHHHHHHHHhhhhcCCCc
Q 009278 27 EAISLSPDNHVLY---SNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNN 103 (538)
Q Consensus 27 ~al~~~p~~~~~~---~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 103 (538)
.++..+|..++.| +..|.|+....-+..+..++-.-...-|+|...+..+|.+++..|++.+|+..|+++..++|.+
T Consensus 186 ~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~ 265 (564)
T KOG1174|consen 186 HAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDN 265 (564)
T ss_pred hheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhh
Confidence 3456666655433 3456676666677777778888888899999999999999999999999999999999999999
Q ss_pred HHHHhhHHHHHHHHhhcccCCCCCCCCcccccccCCchhhcccCCCCCCCcccHHHHHHHHHhhhcCCCchhhhhchHHH
Q 009278 104 EALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRNMMKDIQRNPNNLNLYLKDQRV 183 (538)
Q Consensus 104 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 183 (538)
....-..+.++...|..++..
T Consensus 266 i~~MD~Ya~LL~~eg~~e~~~----------------------------------------------------------- 286 (564)
T KOG1174|consen 266 VEAMDLYAVLLGQEGGCEQDS----------------------------------------------------------- 286 (564)
T ss_pred hhhHHHHHHHHHhccCHhhHH-----------------------------------------------------------
Confidence 998888888777766542100
Q ss_pred HHHHHHHHhhhcCCCCCCCccccccccCCCCCCCccccccCCCCCCCCCCccccHHHHHHHHhHHHHHHHHHHHHHHHhc
Q 009278 184 MQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKEAKERKEKALKEKEAGNAAYKK 263 (538)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (538)
.....+ .......+.-|+.-+..++..
T Consensus 287 -~L~~~L----------------------------------------------------f~~~~~ta~~wfV~~~~l~~~ 313 (564)
T KOG1174|consen 287 -ALMDYL----------------------------------------------------FAKVKYTASHWFVHAQLLYDE 313 (564)
T ss_pred -HHHHHH----------------------------------------------------Hhhhhcchhhhhhhhhhhhhh
Confidence 000000 111123455577788899999
Q ss_pred ccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHHHHHHHhHHHHHHhhhccc
Q 009278 264 KEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSK 343 (538)
Q Consensus 264 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (538)
+++..|+.+-+++++.+|.+..++...|.++..+|+.++|+-.|+.+..+.|.. -++|..+-.+|...++
T Consensus 314 K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~r-------L~~Y~GL~hsYLA~~~--- 383 (564)
T KOG1174|consen 314 KKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYR-------LEIYRGLFHSYLAQKR--- 383 (564)
T ss_pred hhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhh-------HHHHHHHHHHHHhhch---
Confidence 999999999999999999999999999999999999999999999999999977 4555556666666666
Q ss_pred ChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHH-HHHHh-cCChHHHHHHHHHHHhcCCC
Q 009278 344 DYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKG-NEFFK-QQKYPEAIQHYTESLRRNPK 421 (538)
Q Consensus 344 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la-~~~~~-~~~~~~A~~~~~~al~~~~~ 421 (538)
+.+|...-+.++. .-|.++..+..+| .+++. -.--++|.+++++++.+.|.
T Consensus 384 -~kEA~~~An~~~~--------------------------~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~ 436 (564)
T KOG1174|consen 384 -FKEANALANWTIR--------------------------LFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPI 436 (564)
T ss_pred -HHHHHHHHHHHHH--------------------------HhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCc
Confidence 9999888888888 6778888888886 55543 33468899999999999999
Q ss_pred CchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCchHHHHHHHHHHHHccCHHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 009278 422 DPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDGVRRCV 501 (538)
Q Consensus 422 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 501 (538)
...+-..++.++...|.+..++..+++.+...|+ ...+..+|.++...+.+++|.++|..|+.++|++......+-...
T Consensus 437 Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~lE 515 (564)
T KOG1174|consen 437 YTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPD-VNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLRLLE 515 (564)
T ss_pred cHHHHHHHHHHHHhhCccchHHHHHHHHHhhccc-cHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHHHHH
Confidence 9999999999999999999999999999999887 567899999999999999999999999999999999999988877
Q ss_pred HHhhhhc
Q 009278 502 QQINKAG 508 (538)
Q Consensus 502 ~~~~~~~ 508 (538)
......+
T Consensus 516 K~~~~~D 522 (564)
T KOG1174|consen 516 KSDDESD 522 (564)
T ss_pred hccCCCC
Confidence 7666443
No 43
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.91 E-value=3.5e-24 Score=192.53 Aligned_cols=255 Identities=19% Similarity=0.254 Sum_probs=122.7
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHHHHHHHh
Q 009278 254 KEAGNAAYKKKEFEKAIEHYSSALEL--DDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRK 331 (538)
Q Consensus 254 ~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (538)
+.+|.+++..|++++|++++.+.+.. .|+++..|..+|.+....++++.|+..|++++..++..+.. +..+
T Consensus 12 l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~-------~~~l 84 (280)
T PF13429_consen 12 LRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQD-------YERL 84 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-------cccc
Confidence 46699999999999999999766544 48899999999999999999999999999999988876433 3344
Q ss_pred HHHHHHhhhcccChhHHHHHHHHHHhcCCChh-------HHHhhhhHHHHHHHHHHHHHcC--CCchHHHHHHHHHHHhc
Q 009278 332 GTALVKMAKCSKDYEPAIETFQKALTEHRNPD-------TLKKLNEAEKAKKELEQQEIFD--PKIADEEREKGNEFFKQ 402 (538)
Q Consensus 332 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~la~~~~~~ 402 (538)
+.+ ...++ +++|+..+.++.+..+++. ++...++++++...++++.... +.++..|..+|.++...
T Consensus 85 ~~l-~~~~~----~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~ 159 (280)
T PF13429_consen 85 IQL-LQDGD----PEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQL 159 (280)
T ss_dssp --------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHC
T ss_pred ccc-ccccc----ccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHc
Confidence 444 45555 9999999998887665543 4567788999999999877655 67889999999999999
Q ss_pred CChHHHHHHHHHHHhcCCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCchHHHHHHHHHHHHccCHHHHHHHHHH
Q 009278 403 QKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQE 482 (538)
Q Consensus 403 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 482 (538)
|++++|+..|+++++.+|+++.++..++.++...|+++++...+.......|.++..+..+|.++..+|++++|+.+|++
T Consensus 160 G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~ 239 (280)
T PF13429_consen 160 GDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEK 239 (280)
T ss_dssp CHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccc
Confidence 99999999999999999999999999999999999999999999999888899999999999999999999999999999
Q ss_pred HhccCCCCHHHHHHHHHHHHHhhhhccCCCChHHHHHH
Q 009278 483 GLKHDPQNQELLDGVRRCVQQINKAGRGELSPEELKER 520 (538)
Q Consensus 483 al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 520 (538)
++..+|+|+.++..++.++...|+.++|...+.++.+.
T Consensus 240 ~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 240 ALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp HHHHSTT-HHHHHHHHHHHT------------------
T ss_pred cccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999999999999775555443
No 44
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.91 E-value=2.1e-22 Score=181.44 Aligned_cols=244 Identities=13% Similarity=0.170 Sum_probs=216.0
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHHHHHHHhHH
Q 009278 254 KEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGT 333 (538)
Q Consensus 254 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (538)
+..|..+++.|+..+|.-+|+.++..+|.+.++|..||.+....++-..|+..++++++++|++ -.++..++.
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~N-------leaLmaLAV 361 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTN-------LEALMALAV 361 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCcc-------HHHHHHHHH
Confidence 5579999999999999999999999999999999999999999999999999999999999999 566666677
Q ss_pred HHHHhhhcccChhHHHHHHHHHHhcCCChh---------------HHHhhhhHHHHHHHHHHHHHcCC--CchHHHHHHH
Q 009278 334 ALVKMAKCSKDYEPAIETFQKALTEHRNPD---------------TLKKLNEAEKAKKELEQQEIFDP--KIADEEREKG 396 (538)
Q Consensus 334 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~---------------~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~la 396 (538)
.|...+. -.+|+.++.+-+...|.-. .+.....+..-.+.|-.+....| .+++++..||
T Consensus 362 SytNeg~----q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LG 437 (579)
T KOG1125|consen 362 SYTNEGL----QNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLG 437 (579)
T ss_pred HHhhhhh----HHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhH
Confidence 7766666 8999999999988765421 11222344555666777777777 7999999999
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCchHHHHHHHHHHHHccCHHHH
Q 009278 397 NEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKA 476 (538)
Q Consensus 397 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 476 (538)
.+|...|+|++|+.+|+.||...|++..+|+.||-++..-.+..+|+..|.+|+++.|..+.+++++|..+..+|.|++|
T Consensus 438 VLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA 517 (579)
T KOG1125|consen 438 VLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEA 517 (579)
T ss_pred HHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCC----------CHHHHHHHHHHHHHhhhhc
Q 009278 477 LETYQEGLKHDPQ----------NQELLDGVRRCVQQINKAG 508 (538)
Q Consensus 477 ~~~~~~al~~~p~----------~~~~~~~l~~~~~~~~~~~ 508 (538)
.++|-.|+.+.+. +..+|..|..++..+++.+
T Consensus 518 ~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D 559 (579)
T KOG1125|consen 518 VKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSD 559 (579)
T ss_pred HHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCch
Confidence 9999999998654 2368999999998888876
No 45
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=2.1e-21 Score=173.65 Aligned_cols=415 Identities=15% Similarity=0.126 Sum_probs=272.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHHHHHhhccCHHHHHHHHHhhhhcCCCcHHHHhhHHHHHHHHhh
Q 009278 40 SNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASA 119 (538)
Q Consensus 40 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 119 (538)
-..|...+..|+|+.|+..|..++.++|.|...|.+..-+|..+|+|++|+..-.+.++++|+-+..|..++..+..+|+
T Consensus 6 k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~ 85 (539)
T KOG0548|consen 6 KEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGD 85 (539)
T ss_pred HHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhccc
Confidence 45688889999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cccCCCCCCCCcccccccCCchhhcccCCCCCCCcccHHHHHHHHHhhhcCCCchhhhhchHHHHHHHHHHHhhhcCCCC
Q 009278 120 SFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRNMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPT 199 (538)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (538)
+ ..++..+.+.++.+|++....-................ .
T Consensus 86 ~------------------------------------~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~-~--- 125 (539)
T KOG0548|consen 86 Y------------------------------------EEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLF-T--- 125 (539)
T ss_pred H------------------------------------HHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhc-c---
Confidence 7 67888888999999998877666554441111000000 0
Q ss_pred CCCccccccccCCCCCCCccccccCCCCCCCCCCccccHHHHHHHHhHHHHHHHHHHHHHHHhcccHHHHH--HHHHHHH
Q 009278 200 GGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKEAKERKEKALKEKEAGNAAYKKKEFEKAI--EHYSSAL 277 (538)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~--~~~~~al 277 (538)
.|...+.....+.....-...........+..+|.....+..--.+....|.....- ..+....
T Consensus 126 --------------~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~ 191 (539)
T KOG0548|consen 126 --------------KPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGI 191 (539)
T ss_pred --------------CcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCcccccccccc
Confidence 000000000000000001111122222222333332222211000000000000000 0000000
Q ss_pred -----hhCCC---------------------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHHHHHHHh
Q 009278 278 -----ELDDE---------------------DISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRK 331 (538)
Q Consensus 278 -----~~~p~---------------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (538)
...|. -....-.+|.......++..|++.|.+++.++ .+...+ ...
T Consensus 192 ~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~-~~it~~-------~n~ 263 (539)
T KOG0548|consen 192 EILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA-TDITYL-------NNI 263 (539)
T ss_pred ccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHH-------HHH
Confidence 00110 01235678888889999999999999999988 554433 444
Q ss_pred HHHHHHhhhcccChhHHHHHHHHHHhcCCC---------------hhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHH
Q 009278 332 GTALVKMAKCSKDYEPAIETFQKALTEHRN---------------PDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKG 396 (538)
Q Consensus 332 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~---------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la 396 (538)
+.+++..+. +.+.+.....+++.... +..+...++++.++..|.+++..... .
T Consensus 264 aA~~~e~~~----~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt--------~ 331 (539)
T KOG0548|consen 264 AAVYLERGK----YAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRT--------P 331 (539)
T ss_pred HHHHHhccH----HHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC--------H
Confidence 444444444 66555555555543322 12333345555555555554433222 3
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCchHHHHHHHHHHHHccCHHHH
Q 009278 397 NEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKA 476 (538)
Q Consensus 397 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 476 (538)
.++...+..++++.......-++|.-..--...|..++..|+|..|+..|.++|..+|+++..|.++|.||.++|.+..|
T Consensus 332 ~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~a 411 (539)
T KOG0548|consen 332 DLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEA 411 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHH
Confidence 34444445555555555555555555555667799999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCCCHHHHHHHHHHHHHhhhhccCCCChHHHHHHHHhccC-Cchhhhhcc
Q 009278 477 LETYQEGLKHDPQNQELLDGVRRCVQQINKAGRGELSPEELKERQAKGMQ-DPKFRTYSL 535 (538)
Q Consensus 477 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~p~~~~~~~ 535 (538)
+...+++++++|+....+..-+.++..+.++++|. +.+..++. ||...+++.
T Consensus 412 L~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAl-------eay~eale~dp~~~e~~~ 464 (539)
T KOG0548|consen 412 LKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKAL-------EAYQEALELDPSNAEAID 464 (539)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhcCchhHHHHH
Confidence 99999999999999999999999999999999888 66666666 777766543
No 46
>PRK12370 invasion protein regulator; Provisional
Probab=99.90 E-value=3.1e-21 Score=188.95 Aligned_cols=273 Identities=12% Similarity=-0.020 Sum_probs=220.1
Q ss_pred cCCcchH--HHHHHHHHHHhc---CCHHHHHHHHHHHhccCCCchHHHHHHHHHHhhc---------cCHHHHHHHHHhh
Q 009278 31 LSPDNHV--LYSNRSAAHASL---HNYADALADAKKTVELKPDWSKGYSRLGAAHLGL---------QDYIEAVNSYKKG 96 (538)
Q Consensus 31 ~~p~~~~--~~~~la~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---------~~~~~A~~~~~~a 96 (538)
..|.+.+ .++..|..++.. +.+++|+..|+++++++|+++.++..+|.++... +++++|+..++++
T Consensus 251 ~~~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~A 330 (553)
T PRK12370 251 SELNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKA 330 (553)
T ss_pred CCCCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHH
Confidence 4444443 455566655433 4578999999999999999999999999988744 3489999999999
Q ss_pred hhcCCCcHHHHhhHHHHHHHHhhcccCCCCCCCCcccccccCCchhhcccCCCCCCCcccHHHHHHHHHhhhcCCCchhh
Q 009278 97 LDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRNMMKDIQRNPNNLNL 176 (538)
Q Consensus 97 l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 176 (538)
++++|+++.++..+
T Consensus 331 l~ldP~~~~a~~~l------------------------------------------------------------------ 344 (553)
T PRK12370 331 TELDHNNPQALGLL------------------------------------------------------------------ 344 (553)
T ss_pred HhcCCCCHHHHHHH------------------------------------------------------------------
Confidence 99999999876544
Q ss_pred hhchHHHHHHHHHHHhhhcCCCCCCCccccccccCCCCCCCccccccCCCCCCCCCCccccHHHHHHHHhHHHHHHHHHH
Q 009278 177 YLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKEAKERKEKALKEKEA 256 (538)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (538)
T Consensus 345 -------------------------------------------------------------------------------- 344 (553)
T PRK12370 345 -------------------------------------------------------------------------------- 344 (553)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHHHHHHHhHHHHH
Q 009278 257 GNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALV 336 (538)
Q Consensus 257 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (538)
|.++...|++++|+..|+++++++|+++.+++.+|.++...|++++|+..++++++++|.++.. +...+.++.
T Consensus 345 g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~-------~~~~~~~~~ 417 (553)
T PRK12370 345 GLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAA-------GITKLWITY 417 (553)
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhh-------HHHHHHHHH
Confidence 5556667999999999999999999999999999999999999999999999999999987433 223333455
Q ss_pred HhhhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 009278 337 KMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESL 416 (538)
Q Consensus 337 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 416 (538)
..++ +++|+..+++++.. ..|+.+..+..+|.++...|++++|...+.++.
T Consensus 418 ~~g~----~eeA~~~~~~~l~~-------------------------~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~ 468 (553)
T PRK12370 418 YHTG----IDDAIRLGDELRSQ-------------------------HLQDNPILLSMQVMFLSLKGKHELARKLTKEIS 468 (553)
T ss_pred hccC----HHHHHHHHHHHHHh-------------------------ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhh
Confidence 5566 99999999999872 247788889999999999999999999999999
Q ss_pred hcCCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCchHHHHHHHHHHHHccCHHHHHHHHHHHhccCC
Q 009278 417 RRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDP 488 (538)
Q Consensus 417 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 488 (538)
...|.+..++..++..|...|+ +|...+++.++.....+.-......++.-.|+.+.+.-+ +++.+.+.
T Consensus 469 ~~~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~ 537 (553)
T PRK12370 469 TQEITGLIAVNLLYAEYCQNSE--RALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNEDN 537 (553)
T ss_pred hccchhHHHHHHHHHHHhccHH--HHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhccch
Confidence 8889888899999999998884 788877777665433333333488888889999888887 77766543
No 47
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.90 E-value=4.1e-22 Score=179.67 Aligned_cols=261 Identities=16% Similarity=0.190 Sum_probs=200.5
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHhccCCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHHHHHhhccC
Q 009278 6 KAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQD 85 (538)
Q Consensus 6 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 85 (538)
+..|..+++.|+..+|+-.|+.++..+|.+.++|..||.+....++-..|+..++++++++|+|..++..||..|...|.
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGL 368 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhcCCCcHHHHhhHHHHHHHHhhcccCCCCCCCCcccccccCCchhhcccCCCCCCCcccHHHHHHHHH
Q 009278 86 YIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRNMMK 165 (538)
Q Consensus 86 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (538)
-.+|+.++.+.+...|........- .
T Consensus 369 q~~Al~~L~~Wi~~~p~y~~l~~a~--------~---------------------------------------------- 394 (579)
T KOG1125|consen 369 QNQALKMLDKWIRNKPKYVHLVSAG--------E---------------------------------------------- 394 (579)
T ss_pred HHHHHHHHHHHHHhCccchhccccC--------c----------------------------------------------
Confidence 9999999999999887643211000 0
Q ss_pred hhhcCCCchhhhhchHHHHHHHHHHHhhhcCCCCCCCccccccccCCCCCCCccccccCCCCCCCCCCccccHHHHHHHH
Q 009278 166 DIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKEAKE 245 (538)
Q Consensus 166 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (538)
...+...
T Consensus 395 --~~~~~~~----------------------------------------------------------------------- 401 (579)
T KOG1125|consen 395 --NEDFENT----------------------------------------------------------------------- 401 (579)
T ss_pred --cccccCC-----------------------------------------------------------------------
Confidence 0000000
Q ss_pred hHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHH
Q 009278 246 RKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDD--EDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKM 323 (538)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 323 (538)
........+..-.+.|-.+....| .++++...||.+|...|+|++|+.+|+.++...|++
T Consensus 402 ------------~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd------ 463 (579)
T KOG1125|consen 402 ------------KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPND------ 463 (579)
T ss_pred ------------cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCch------
Confidence 000001122344456666677777 688999999999999999999999999999988888
Q ss_pred HHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcC
Q 009278 324 IARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQ 403 (538)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 403 (538)
...|.++|-.+..-.+ .++|+..|+++++ +.|....+++++|..++..|
T Consensus 464 -~~lWNRLGAtLAN~~~----s~EAIsAY~rALq--------------------------LqP~yVR~RyNlgIS~mNlG 512 (579)
T KOG1125|consen 464 -YLLWNRLGATLANGNR----SEEAISAYNRALQ--------------------------LQPGYVRVRYNLGISCMNLG 512 (579)
T ss_pred -HHHHHHhhHHhcCCcc----cHHHHHHHHHHHh--------------------------cCCCeeeeehhhhhhhhhhh
Confidence 6777788877777777 7788888877777 77777888888888888888
Q ss_pred ChHHHHHHHHHHHhcCCCC----------chhHhHHHHHHHHhCCchhH
Q 009278 404 KYPEAIQHYTESLRRNPKD----------PRTYSNRAACYTKLGAMPEG 442 (538)
Q Consensus 404 ~~~~A~~~~~~al~~~~~~----------~~~~~~la~~~~~~~~~~~A 442 (538)
.|.+|+++|-.+|.+.+.+ ..+|-.|-.++..+++.+-+
T Consensus 513 ~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l 561 (579)
T KOG1125|consen 513 AYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLL 561 (579)
T ss_pred hHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHH
Confidence 8888888888887765541 13455555555555555533
No 48
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.90 E-value=3.5e-22 Score=166.99 Aligned_cols=276 Identities=13% Similarity=0.122 Sum_probs=199.6
Q ss_pred HHhhcCCHHHHHHHHHHHhccC---Cc-------chHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHHHHH
Q 009278 11 AAFSSGDYEAAVRHFTEAISLS---PD-------NHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAH 80 (538)
Q Consensus 11 ~~~~~g~~~~A~~~~~~al~~~---p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 80 (538)
+++...+...|-......++.+ |. +.+.-..+|.||+++|-+.+|.+.++..++..| .++.+..++.+|
T Consensus 188 ~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~-~~dTfllLskvY 266 (478)
T KOG1129|consen 188 LFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFP-HPDTFLLLSKVY 266 (478)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCC-chhHHHHHHHHH
Confidence 4555666666665555544432 11 223445688888888888888888888888776 567788888888
Q ss_pred hhccCHHHHHHHHHhhhhcCCCcHHHHhhHHHHHHHHhhcccCCCCCCCCcccccccCCchhhcccCCCCCCCcccHHHH
Q 009278 81 LGLQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDF 160 (538)
Q Consensus 81 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (538)
.+..+...|+..|...++..|.+.......
T Consensus 267 ~ridQP~~AL~~~~~gld~fP~~VT~l~g~-------------------------------------------------- 296 (478)
T KOG1129|consen 267 QRIDQPERALLVIGEGLDSFPFDVTYLLGQ-------------------------------------------------- 296 (478)
T ss_pred HHhccHHHHHHHHhhhhhcCCchhhhhhhh--------------------------------------------------
Confidence 888888888888888888888766554433
Q ss_pred HHHHHhhhcCCCchhhhhchHHHHHHHHHHHhhhcCCCCCCCccccccccCCCCCCCccccccCCCCCCCCCCccccHHH
Q 009278 161 RNMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEE 240 (538)
Q Consensus 161 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (538)
T Consensus 297 -------------------------------------------------------------------------------- 296 (478)
T KOG1129|consen 297 -------------------------------------------------------------------------------- 296 (478)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhh
Q 009278 241 KEAKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSD 320 (538)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 320 (538)
+.++...+++++|.++|+.+++.+|.+.++.-.+|.-|+..++++-|+.+|+++++..-.+
T Consensus 297 ----------------ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~s--- 357 (478)
T KOG1129|consen 297 ----------------ARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQS--- 357 (478)
T ss_pred ----------------HHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCC---
Confidence 3445555777788888888888888888887777777888888888888888888776665
Q ss_pred HHHHHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHH
Q 009278 321 FKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFF 400 (538)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~ 400 (538)
++.+.++|.+++.-++ ++-++..|++++..... .....++|+++|.+..
T Consensus 358 ----peLf~NigLCC~yaqQ----~D~~L~sf~RAlstat~-----------------------~~~aaDvWYNlg~vaV 406 (478)
T KOG1129|consen 358 ----PELFCNIGLCCLYAQQ----IDLVLPSFQRALSTATQ-----------------------PGQAADVWYNLGFVAV 406 (478)
T ss_pred ----hHHHhhHHHHHHhhcc----hhhhHHHHHHHHhhccC-----------------------cchhhhhhhccceeEE
Confidence 5667777777777777 77777777777764321 2234677777777777
Q ss_pred hcCChHHHHHHHHHHHhcCCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCchHHHHHHHHHH
Q 009278 401 KQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQ 467 (538)
Q Consensus 401 ~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 467 (538)
..|++.-|..+|+-++..++++.++++++|.+-.+.|+.++|..++..+-...|+-.+..++++.+-
T Consensus 407 ~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~~~Nl~~~s 473 (478)
T KOG1129|consen 407 TIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEVTTNLQFMS 473 (478)
T ss_pred eccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccccccccceeEEe
Confidence 7777777777777777777777777777777777777777777777777777777766666665443
No 49
>PRK12370 invasion protein regulator; Provisional
Probab=99.89 E-value=8.3e-21 Score=185.99 Aligned_cols=207 Identities=19% Similarity=0.045 Sum_probs=179.2
Q ss_pred cccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHHHHHHHhHHHHHHhhhcc
Q 009278 263 KKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCS 342 (538)
Q Consensus 263 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (538)
.+++++|+..++++++.+|+++.++..+|.++...|++++|+..|+++++++|++ +.+++.+|.++...|+
T Consensus 317 ~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~-------~~a~~~lg~~l~~~G~-- 387 (553)
T PRK12370 317 QNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPIS-------ADIKYYYGWNLFMAGQ-- 387 (553)
T ss_pred chHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHCCC--
Confidence 4678999999999999999999999999999999999999999999999999998 6677778888888888
Q ss_pred cChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhcC-CC
Q 009278 343 KDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRN-PK 421 (538)
Q Consensus 343 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~ 421 (538)
+++|+..+++++. .+|.++..+..++.+++..|++++|+..+++++... |+
T Consensus 388 --~~eAi~~~~~Al~--------------------------l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~ 439 (553)
T PRK12370 388 --LEEALQTINECLK--------------------------LDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQD 439 (553)
T ss_pred --HHHHHHHHHHHHh--------------------------cCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhcccc
Confidence 9999999999999 788888777777778888999999999999999875 77
Q ss_pred CchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCchHHHHHHHHHHHHccCHHHHHHHHHHHhcc---CCCCHHHHHHHH
Q 009278 422 DPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKH---DPQNQELLDGVR 498 (538)
Q Consensus 422 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~ 498 (538)
++..+..+|.++..+|++++|...+.++....|....+...++.+|...|+ .|...+++.++. .|.++.. +.
T Consensus 440 ~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~~~~~~~~~~~~---~~ 514 (553)
T PRK12370 440 NPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE--RALPTIREFLESEQRIDNNPGL---LP 514 (553)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH--HHHHHHHHHHHHhhHhhcCchH---HH
Confidence 888999999999999999999999999999999999999999999999885 777777776654 3443333 56
Q ss_pred HHHHHhhhhccCC
Q 009278 499 RCVQQINKAGRGE 511 (538)
Q Consensus 499 ~~~~~~~~~~~a~ 511 (538)
.++.-.|+.+.+.
T Consensus 515 ~~~~~~g~~~~~~ 527 (553)
T PRK12370 515 LVLVAHGEAIAEK 527 (553)
T ss_pred HHHHHHhhhHHHH
Confidence 6666666655554
No 50
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.89 E-value=9.7e-20 Score=166.26 Aligned_cols=390 Identities=15% Similarity=0.124 Sum_probs=275.8
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHhccCCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHHHHHhhc
Q 009278 4 EAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGL 83 (538)
Q Consensus 4 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 83 (538)
.+|.++...+..++|...++..+.++...|.+++.+...|..+..+|+-++|......++..++.+..+|..+|.++...
T Consensus 9 ~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~d 88 (700)
T KOG1156|consen 9 ALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSD 88 (700)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhh
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHhhhhcCCCcHHHHhhHHHHHHHHhhcccCCCCCCCCcccccccCCchhhcccCCCCCCCcccHHHHHHH
Q 009278 84 QDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRNM 163 (538)
Q Consensus 84 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (538)
.+|++|+++|+.|+.++|+|...+..++.+...++... +-++
T Consensus 89 K~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~------------------------------------~~~~-- 130 (700)
T KOG1156|consen 89 KKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYE------------------------------------GYLE-- 130 (700)
T ss_pred hhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhh------------------------------------hHHH--
Confidence 99999999999999999999999999998887776541 1111
Q ss_pred HHhhhcCCCchhhhhchHHHHHHHHHHHhhhcCCCCCCCccccccccCCCCCCCccccccCCCCCCCCCCccccHHHHHH
Q 009278 164 MKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKEA 243 (538)
Q Consensus 164 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (538)
.....+
T Consensus 131 --------------------------------------------------------------------------tr~~LL 136 (700)
T KOG1156|consen 131 --------------------------------------------------------------------------TRNQLL 136 (700)
T ss_pred --------------------------------------------------------------------------HHHHHH
Confidence 112223
Q ss_pred HHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhC---CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhh
Q 009278 244 KERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELD---DEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSD 320 (538)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 320 (538)
...|..-..|...+..+.-.|++..|....+...+.. |+....-......|..+--.+... ++++++..-+....
T Consensus 137 ql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~--~q~ale~L~~~e~~ 214 (700)
T KOG1156|consen 137 QLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGS--LQKALEHLLDNEKQ 214 (700)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHccc--HHHHHHHHHhhhhH
Confidence 3345566677788888888888988888888777655 433344444444444333333222 44444432222222
Q ss_pred HHHHHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCChhHH-----HhhhhHHH---HH-HHHHHHHHcCCCchHH
Q 009278 321 FKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTL-----KKLNEAEK---AK-KELEQQEIFDPKIADE 391 (538)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-----~~~~~~~~---a~-~~~~~~~~~~~~~~~~ 391 (538)
...-.......+.++..+++ +++|+..|...+...|+.-.+ ..+|.+.. ++ ..|...-+..|... .
T Consensus 215 i~Dkla~~e~ka~l~~kl~~----lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e-~ 289 (700)
T KOG1156|consen 215 IVDKLAFEETKADLLMKLGQ----LEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHE-C 289 (700)
T ss_pred HHHHHHHhhhHHHHHHHHhh----HHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccc-c
Confidence 21113344556777778888 899999998888888775322 12222222 22 23333333222111 0
Q ss_pred HHHHHHH-----------------HHhc-------------CChHHHHHHHHHHH-------hcC------------CCC
Q 009278 392 EREKGNE-----------------FFKQ-------------QKYPEAIQHYTESL-------RRN------------PKD 422 (538)
Q Consensus 392 ~~~la~~-----------------~~~~-------------~~~~~A~~~~~~al-------~~~------------~~~ 422 (538)
-..++.. .+.. .+..+ ..+.++.+ .-. |..
T Consensus 290 p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k-~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~Pt 368 (700)
T KOG1156|consen 290 PRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEK-VAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPT 368 (700)
T ss_pred chhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhH-hHHHHHHHHHHHhhcccccCCCcccccccCCch
Confidence 0000000 0011 11111 11222222 111 111
Q ss_pred c--hhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCchHHHHHHHHHHHHccCHHHHHHHHHHHhccCCCCHHHHHHHHHH
Q 009278 423 P--RTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDGVRRC 500 (538)
Q Consensus 423 ~--~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 500 (538)
+ ..++.++.-+...|+++.|..+++.|+...|..++.+...|+++...|+.++|..++..+.+++-.|..+...-+.-
T Consensus 369 tllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKY 448 (700)
T KOG1156|consen 369 TLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKY 448 (700)
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHH
Confidence 1 34567888899999999999999999999999999999999999999999999999999999998888888788888
Q ss_pred HHHhhhhccCCCC
Q 009278 501 VQQINKAGRGELS 513 (538)
Q Consensus 501 ~~~~~~~~~a~~~ 513 (538)
..+.++.++|...
T Consensus 449 mLrAn~i~eA~~~ 461 (700)
T KOG1156|consen 449 MLRANEIEEAEEV 461 (700)
T ss_pred HHHccccHHHHHH
Confidence 8888888887733
No 51
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.89 E-value=1e-19 Score=170.88 Aligned_cols=297 Identities=12% Similarity=0.051 Sum_probs=219.7
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHHHhccCCcchHHHHHH-HHHHHhcCCHHHHHHHHHHHhccCCCchHH-HHHHHHHH
Q 009278 3 DEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNR-SAAHASLHNYADALADAKKTVELKPDWSKG-YSRLGAAH 80 (538)
Q Consensus 3 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l-a~~~~~~g~~~~A~~~~~~al~~~p~~~~~-~~~la~~~ 80 (538)
...+..|...+..|+|++|.+...+.-...+. +..++.+ +.+....|+++.|..++.++.+.+|++..+ ....+.++
T Consensus 85 ~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~-p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~ 163 (398)
T PRK10747 85 RKQTEQALLKLAEGDYQQVEKLMTRNADHAEQ-PVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQ 163 (398)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 45678899999999999999888887665443 4454545 666699999999999999999999998544 44559999
Q ss_pred hhccCHHHHHHHHHhhhhcCCCcHHHHhhHHHHHHHHhhcccCCCCCCCCcccccccCCchhhcccCCCCCCCcccHHHH
Q 009278 81 LGLQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDF 160 (538)
Q Consensus 81 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (538)
...|++++|+..++++.+.+|+++.+...+
T Consensus 164 l~~g~~~~Al~~l~~~~~~~P~~~~al~ll-------------------------------------------------- 193 (398)
T PRK10747 164 LARNENHAARHGVDKLLEVAPRHPEVLRLA-------------------------------------------------- 193 (398)
T ss_pred HHCCCHHHHHHHHHHHHhcCCCCHHHHHHH--------------------------------------------------
Confidence 999999999999999999999988776544
Q ss_pred HHHHHhhhcCCCchhhhhchHHHHHHHHHHHhhhcCCCCCCCccccccccCCCCCCCccccccCCCCCCCCCCccccHHH
Q 009278 161 RNMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEE 240 (538)
Q Consensus 161 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (538)
T Consensus 194 -------------------------------------------------------------------------------- 193 (398)
T PRK10747 194 -------------------------------------------------------------------------------- 193 (398)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHH--------HHHHHHHHhCCHHHHHHHHHHHHH
Q 009278 241 KEAKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLT--------NRAAVYLEMGKYEECIKDCDKAVE 312 (538)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~--------~la~~~~~~~~~~~A~~~~~~~~~ 312 (538)
+.++...|+|++|+..+.+..+..+.++.... .+........+.+.....++..-.
T Consensus 194 ----------------~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~ 257 (398)
T PRK10747 194 ----------------EQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSR 257 (398)
T ss_pred ----------------HHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCH
Confidence 44556668999999999888877665543222 111111122223333333333333
Q ss_pred ccccchhhHHHHHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHH
Q 009278 313 RGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEE 392 (538)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 392 (538)
..|++ ..+....+..+...|+ .++|...++++++. +.++...
T Consensus 258 ~~~~~-------~~~~~~~A~~l~~~g~----~~~A~~~L~~~l~~---------------------------~~~~~l~ 299 (398)
T PRK10747 258 KTRHQ-------VALQVAMAEHLIECDD----HDTAQQIILDGLKR---------------------------QYDERLV 299 (398)
T ss_pred HHhCC-------HHHHHHHHHHHHHCCC----HHHHHHHHHHHHhc---------------------------CCCHHHH
Confidence 33444 4555556666666666 88888888888872 2233333
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCchHHHHHHHHHHHHccC
Q 009278 393 REKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKE 472 (538)
Q Consensus 393 ~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 472 (538)
...+.+ ..+++++++..+++.++.+|+++..+..+|.++...|++++|..+|+++++..|++. .+..++.++.++|+
T Consensus 300 ~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~-~~~~La~~~~~~g~ 376 (398)
T PRK10747 300 LLIPRL--KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAY-DYAWLADALDRLHK 376 (398)
T ss_pred HHHhhc--cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHcCC
Confidence 333333 448889999999999999999999999999999999999999999999999988854 45678999999999
Q ss_pred HHHHHHHHHHHhccC
Q 009278 473 YDKALETYQEGLKHD 487 (538)
Q Consensus 473 ~~~A~~~~~~al~~~ 487 (538)
.++|..+|++++.+.
T Consensus 377 ~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 377 PEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHHHHHhhh
Confidence 999999999988754
No 52
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.89 E-value=2.2e-18 Score=157.40 Aligned_cols=410 Identities=14% Similarity=0.032 Sum_probs=312.6
Q ss_pred HHHHHHHHHhccCCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHHHHHhhccCHHHHHHHHHhhhhc
Q 009278 20 AAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDI 99 (538)
Q Consensus 20 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 99 (538)
.=-..++++++..|++...|- .-..+.+.+.|+..+.+|++.-|.+.+.|..+++ +.-|+.|...+.++-+.
T Consensus 364 ~K~RVlRKALe~iP~sv~LWK----aAVelE~~~darilL~rAveccp~s~dLwlAlar----LetYenAkkvLNkaRe~ 435 (913)
T KOG0495|consen 364 NKKRVLRKALEHIPRSVRLWK----AAVELEEPEDARILLERAVECCPQSMDLWLALAR----LETYENAKKVLNKAREI 435 (913)
T ss_pred HHHHHHHHHHHhCCchHHHHH----HHHhccChHHHHHHHHHHHHhccchHHHHHHHHH----HHHHHHHHHHHHHHHhh
Confidence 335678999999998877663 3355677788999999999999999998877764 55689999999999999
Q ss_pred CCCcHHHHhhHHHHHHHHhhcccCCCCCCCCcccccccCCchhhcccCCC----------------CCCCcccHHHHH-H
Q 009278 100 DPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADP----------------TTRSYLDQDDFR-N 162 (538)
Q Consensus 100 ~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~-~ 162 (538)
-|.++.+|..-+.+....|...... .++.. ....+..+. ...+.+..+++- .
T Consensus 436 iptd~~IWitaa~LEE~ngn~~mv~---------kii~r--gl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~a 504 (913)
T KOG0495|consen 436 IPTDREIWITAAKLEEANGNVDMVE---------KIIDR--GLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRA 504 (913)
T ss_pred CCCChhHHHHHHHHHHhcCCHHHHH---------HHHHH--HHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHH
Confidence 9999999999998888888653211 00000 000000000 000001111111 1
Q ss_pred HHHhhhcCCCchhhhhchHHHHHHHHHHHhhhcCCCCCCCccccccccCCCCCCCccccccCCCCCCCCCCccccHHHHH
Q 009278 163 MMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKE 242 (538)
Q Consensus 163 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (538)
.+.......+....++...+.+.....+. -+...+..+
T Consensus 505 vigigvEeed~~~tw~~da~~~~k~~~~~------------------------------------------carAVya~a 542 (913)
T KOG0495|consen 505 VIGIGVEEEDRKSTWLDDAQSCEKRPAIE------------------------------------------CARAVYAHA 542 (913)
T ss_pred HHhhccccchhHhHHhhhHHHHHhcchHH------------------------------------------HHHHHHHHH
Confidence 11111111222222333333332222111 111334556
Q ss_pred HHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHH
Q 009278 243 AKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFK 322 (538)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 322 (538)
+...|..-..|...+..-...|..+.-..++++++...|.....|...+..+...|+...|..++..+++.+|++.
T Consensus 543 lqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnse---- 618 (913)
T KOG0495|consen 543 LQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSE---- 618 (913)
T ss_pred HhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcH----
Confidence 6667778888888888888899999999999999999999999999999999999999999999999999999984
Q ss_pred HHHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCChhH-------HHhhhhHHHHHHHHHHHHHcCCCchHHHHHH
Q 009278 323 MIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDT-------LKKLNEAEKAKKELEQQEIFDPKIADEEREK 395 (538)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 395 (538)
.+++..-.+.....+ ++.|...|.++....+...+ ...++..++|+..++.+++..|.....|..+
T Consensus 619 ---eiwlaavKle~en~e----~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lml 691 (913)
T KOG0495|consen 619 ---EIWLAAVKLEFENDE----LERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLML 691 (913)
T ss_pred ---HHHHHHHHHhhcccc----HHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 455555555555556 99999999999998887554 3456888999999999999999999999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCchHHHHHHHHHHHHccCHHH
Q 009278 396 GNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDK 475 (538)
Q Consensus 396 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 475 (538)
|.++..+++.+.|...|...++..|..+.+|..++.+-...|....|...++++.-.+|.++..|...-.+-.+.|+.++
T Consensus 692 GQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~ 771 (913)
T KOG0495|consen 692 GQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQ 771 (913)
T ss_pred hHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCCHHHHHHHHHHH
Q 009278 476 ALETYQEGLKHDPQNQELLDGVRRCV 501 (538)
Q Consensus 476 A~~~~~~al~~~p~~~~~~~~l~~~~ 501 (538)
|...+.+|++-.|++...|..-..+.
T Consensus 772 a~~lmakALQecp~sg~LWaEaI~le 797 (913)
T KOG0495|consen 772 AELLMAKALQECPSSGLLWAEAIWLE 797 (913)
T ss_pred HHHHHHHHHHhCCccchhHHHHHHhc
Confidence 99999999999998877775544443
No 53
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.89 E-value=1.6e-21 Score=163.15 Aligned_cols=211 Identities=10% Similarity=0.054 Sum_probs=187.8
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHHHHHHHh
Q 009278 252 KEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRK 331 (538)
Q Consensus 252 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (538)
.+..++.+|.+..++..|+..|.+.++..|.+...+...+.++..++++++|.++|+.+++.+|.+. ++...+
T Consensus 258 TfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nv-------EaiAci 330 (478)
T KOG1129|consen 258 TFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINV-------EAIACI 330 (478)
T ss_pred HHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccc-------eeeeee
Confidence 3455677788889999999999999999999999999999999999999999999999999999884 444455
Q ss_pred HHHHHHhhhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcCChHHHHHH
Q 009278 332 GTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQH 411 (538)
Q Consensus 332 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 411 (538)
+..|+..++ ++-|+.+|+++++ +...+++.+.++|.+++..++++-++..
T Consensus 331 a~~yfY~~~----PE~AlryYRRiLq--------------------------mG~~speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 331 AVGYFYDNN----PEMALRYYRRILQ--------------------------MGAQSPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred eeccccCCC----hHHHHHHHHHHHH--------------------------hcCCChHHHhhHHHHHHhhcchhhhHHH
Confidence 555555556 9999999999999 7788999999999999999999999999
Q ss_pred HHHHHhcCCC---CchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCchHHHHHHHHHHHHccCHHHHHHHHHHHhccCC
Q 009278 412 YTESLRRNPK---DPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDP 488 (538)
Q Consensus 412 ~~~al~~~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 488 (538)
|++++....+ -.++|+++|.+....|++.-|..+|+-++..+|++..++.++|.+-.+.|+.++|..++..|-...|
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P 460 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMP 460 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCc
Confidence 9999987542 3689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHH
Q 009278 489 QNQELLDGVRR 499 (538)
Q Consensus 489 ~~~~~~~~l~~ 499 (538)
+-.+...+++.
T Consensus 461 ~m~E~~~Nl~~ 471 (478)
T KOG1129|consen 461 DMAEVTTNLQF 471 (478)
T ss_pred cccccccceeE
Confidence 88777666543
No 54
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.88 E-value=1.3e-20 Score=169.10 Aligned_cols=93 Identities=19% Similarity=0.241 Sum_probs=74.1
Q ss_pred cCCHHHHHHHHHHHhccCC---c-chHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHHHHHhhccCHHHHH
Q 009278 15 SGDYEAAVRHFTEAISLSP---D-NHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAV 90 (538)
Q Consensus 15 ~g~~~~A~~~~~~al~~~p---~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~ 90 (538)
.+..+.++..+.+++...| . .+..|+.+|.++...|++++|+..|+++++++|+++.+|..+|.++...|++++|+
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 4566778888888886433 2 35778888888888888888888888888888888888888888888888888888
Q ss_pred HHHHhhhhcCCCcHHHH
Q 009278 91 NSYKKGLDIDPNNEALK 107 (538)
Q Consensus 91 ~~~~~al~~~p~~~~~~ 107 (538)
..|+++++++|++..++
T Consensus 119 ~~~~~Al~l~P~~~~a~ 135 (296)
T PRK11189 119 EAFDSVLELDPTYNYAY 135 (296)
T ss_pred HHHHHHHHhCCCCHHHH
Confidence 88888888888765543
No 55
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.88 E-value=2e-20 Score=178.11 Aligned_cols=421 Identities=15% Similarity=0.098 Sum_probs=314.3
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHhccCCcchHHHHHHHHHH--------------------------HhcCCHHHHHHHH
Q 009278 6 KAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAH--------------------------ASLHNYADALADA 59 (538)
Q Consensus 6 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~--------------------------~~~g~~~~A~~~~ 59 (538)
..+|.+......|.+|...+.......-+ -+.+..+.+|+ ...++...|+..|
T Consensus 403 ~akgl~~ie~~~y~Daa~tl~lv~~~s~n-d~slselswc~~~~~ek~mdva~~~~~e~~~~w~a~~~~rK~~~~al~al 481 (1238)
T KOG1127|consen 403 RAKGLAPIEANVYTDAAITLDLVSSLSFN-DDSLSELSWCLPRALEKMMDVALLLECENSEFWVALGCMRKNSALALHAL 481 (1238)
T ss_pred hhcchhHHHHhhchHHHHHHHHHHHhhcC-chhhhHhhHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 35666777778888888887777665522 12222222221 1244578899999
Q ss_pred HHHhccCCCchHHHHHHHHHHhhccCHHHHHHHHHhhhhcCCCcHHHHhhHHHHHHHHhhcccCCCCCCCCcccccccCC
Q 009278 60 KKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGP 139 (538)
Q Consensus 60 ~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (538)
-++++++|....++..+|.+|..-.+...|.++|.+|++++|.+.+++...+..+......
T Consensus 482 i~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~w------------------- 542 (1238)
T KOG1127|consen 482 IRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTW------------------- 542 (1238)
T ss_pred HHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccH-------------------
Confidence 9999999999999999999999999999999999999999999999999998888776443
Q ss_pred chhhcccCCCCCCCcccHHHHHHHHHhhhcCCCchhh--hhchHHHHHHHHHHHhhhcCCCCCCCccccccccCCCCCCC
Q 009278 140 EMWAKLTADPTTRSYLDQDDFRNMMKDIQRNPNNLNL--YLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPET 217 (538)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (538)
+.++......-+..|..... |...|-+
T Consensus 543 -----------------e~a~~I~l~~~qka~a~~~k~nW~~rG~y---------------------------------- 571 (1238)
T KOG1127|consen 543 -----------------EEAFEICLRAAQKAPAFACKENWVQRGPY---------------------------------- 571 (1238)
T ss_pred -----------------HHHHHHHHHHhhhchHHHHHhhhhhcccc----------------------------------
Confidence 22222222222222221111 0000000
Q ss_pred ccccccCCCCCCCCCCccccHHHHHHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q 009278 218 SKEETRKPESEPEPEPMELTEEEKEAKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEM 297 (538)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 297 (538)
...+.+...++.....++..+|.+...|..+|.+|...|.+..|++.|.++..++|.+....+..+.+...+
T Consensus 572 --------yLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~ 643 (1238)
T KOG1127|consen 572 --------YLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDN 643 (1238)
T ss_pred --------ccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHh
Confidence 001112334556677778888999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHccccchhhHHHHHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCC--------hh------
Q 009278 298 GKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRN--------PD------ 363 (538)
Q Consensus 298 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--------~~------ 363 (538)
|+|.+|+..+...+............++..+.+.+..+.-.+- ..+|...+++.++.... ..
T Consensus 644 GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf----~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~a 719 (1238)
T KOG1127|consen 644 GKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGF----QKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVA 719 (1238)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH----hhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 9999999999999998777777777778888888877777776 66666666666552211 00
Q ss_pred ---------------------HHHh----hhh------HHHHHHHHHHHHHcCCCchHHHHHHHHHHHh--------cCC
Q 009278 364 ---------------------TLKK----LNE------AEKAKKELEQQEIFDPKIADEEREKGNEFFK--------QQK 404 (538)
Q Consensus 364 ---------------------~~~~----~~~------~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~--------~~~ 404 (538)
++.. ++. .--+.+++...+..- ..+..|+++|.-|++ +.+
T Consensus 720 sdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~-~~~~~WyNLGinylr~f~~l~et~~~ 798 (1238)
T KOG1127|consen 720 SDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLA-IHMYPWYNLGINYLRYFLLLGETMKD 798 (1238)
T ss_pred hHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHh-hccchHHHHhHHHHHHHHHcCCcchh
Confidence 0000 000 011222333222222 236678888888776 334
Q ss_pred hHHHHHHHHHHHhcCCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCchHHHHHHHHHHHHccCHHHHHHHHHHHh
Q 009278 405 YPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGL 484 (538)
Q Consensus 405 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 484 (538)
-..|+.++.+++++..++...|+.+|.+ ...|++.-|..+|-+.+...|.+.-.|.++|.++....+++-|.+.|.++.
T Consensus 799 ~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~q 877 (1238)
T KOG1127|consen 799 ACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQ 877 (1238)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhh
Confidence 4589999999999999999999999998 566899999999999999999999999999999999999999999999999
Q ss_pred ccCCCCHHHHHHHHHHHHHhhhhccCC
Q 009278 485 KHDPQNQELLDGVRRCVQQINKAGRGE 511 (538)
Q Consensus 485 ~~~p~~~~~~~~l~~~~~~~~~~~~a~ 511 (538)
.++|.|...|...+.+....|+.-++.
T Consensus 878 SLdP~nl~~WlG~Ali~eavG~ii~~~ 904 (1238)
T KOG1127|consen 878 SLDPLNLVQWLGEALIPEAVGRIIERL 904 (1238)
T ss_pred hcCchhhHHHHHHHHhHHHHHHHHHHH
Confidence 999999999999999999999765554
No 56
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.88 E-value=1.9e-19 Score=169.06 Aligned_cols=299 Identities=11% Similarity=0.055 Sum_probs=229.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHH-HHHHhhccCHHHHHHHHHhhhhcCCCcHHHHhhHHHHHH
Q 009278 37 VLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRL-GAAHLGLQDYIEAVNSYKKGLDIDPNNEALKSGLADAKA 115 (538)
Q Consensus 37 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l-a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 115 (538)
.-.+..|...+..|+++.|.+...+.-...+ ++..++.+ +.+....|+++.|..+|.++.+.+|++....
T Consensus 85 ~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~-~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~-------- 155 (398)
T PRK10747 85 RKQTEQALLKLAEGDYQQVEKLMTRNADHAE-QPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPV-------- 155 (398)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhccc-chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHH--------
Confidence 3345677777888999999988887655433 34444444 6666999999999999999999888764321
Q ss_pred HHhhcccCCCCCCCCcccccccCCchhhcccCCCCCCCcccHHHHHHHHHhhhcCCCchhhhhchHHHHHHHHHHHhhhc
Q 009278 116 AASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRNMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKF 195 (538)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (538)
T Consensus 156 -------------------------------------------------------------------------------- 155 (398)
T PRK10747 156 -------------------------------------------------------------------------------- 155 (398)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCccccccccCCCCCCCccccccCCCCCCCCCCccccHHHHHHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Q 009278 196 KGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKEAKERKEKALKEKEAGNAAYKKKEFEKAIEHYSS 275 (538)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 275 (538)
....+.++...|++++|+..+++
T Consensus 156 ---------------------------------------------------------~l~~a~l~l~~g~~~~Al~~l~~ 178 (398)
T PRK10747 156 ---------------------------------------------------------EITRVRIQLARNENHAARHGVDK 178 (398)
T ss_pred ---------------------------------------------------------HHHHHHHHHHCCCHHHHHHHHHH
Confidence 11236778889999999999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHH-HHHHHHhHHHHHHhhhcccChhHHHHHHHH
Q 009278 276 ALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMI-ARALTRKGTALVKMAKCSKDYEPAIETFQK 354 (538)
Q Consensus 276 al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 354 (538)
+.+.+|+++.++..++.+|...|++++|+..+.+..+..+.++.....+ ..++..+..... .......+.+
T Consensus 179 ~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~--------~~~~~~~l~~ 250 (398)
T PRK10747 179 LLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAM--------ADQGSEGLKR 250 (398)
T ss_pred HHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH--------HhcCHHHHHH
Confidence 9999999999999999999999999999999999998776543332111 122221111100 1111222222
Q ss_pred HHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHhHHHHHHH
Q 009278 355 ALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYT 434 (538)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~ 434 (538)
.++ ......|+++.+...+|..+...|+.++|...++++++. |.++......+.+
T Consensus 251 ~w~----------------------~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l-- 305 (398)
T PRK10747 251 WWK----------------------NQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDERLVLLIPRL-- 305 (398)
T ss_pred HHH----------------------hCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHHHhhc--
Confidence 222 111256789999999999999999999999999999994 4466555444444
Q ss_pred HhCCchhHHHHHHHHHhcCCCchHHHHHHHHHHHHccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhccCCCCh
Q 009278 435 KLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDGVRRCVQQINKAGRGELSP 514 (538)
Q Consensus 435 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~ 514 (538)
..++.+++++.+++.++.+|+++..+..+|.++...|++++|.++|+++++..|++.. +..++.++.++|+.++|..++
T Consensus 306 ~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~~g~~~~A~~~~ 384 (398)
T PRK10747 306 KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD-YAWLADALDRLHKPEEAAAMR 384 (398)
T ss_pred cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCCHHHHHHHH
Confidence 4499999999999999999999999999999999999999999999999999999765 458999999999999987554
Q ss_pred H
Q 009278 515 E 515 (538)
Q Consensus 515 ~ 515 (538)
.
T Consensus 385 ~ 385 (398)
T PRK10747 385 R 385 (398)
T ss_pred H
Confidence 4
No 57
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.88 E-value=1e-18 Score=162.85 Aligned_cols=406 Identities=13% Similarity=0.070 Sum_probs=295.1
Q ss_pred HHhhcCCHHHHHHHHHHHhcc-----CCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHHHHHhhccC
Q 009278 11 AAFSSGDYEAAVRHFTEAISL-----SPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQD 85 (538)
Q Consensus 11 ~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 85 (538)
.+.-..+.++++-..--.+.. -.+++.+|-.+.......|++..+.+.|++++...-...+.|..++.+|...|.
T Consensus 293 s~i~Re~~~d~ilslm~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~ 372 (799)
T KOG4162|consen 293 SLIPRENIEDAILSLMLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGS 372 (799)
T ss_pred hccccccHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhcc
Confidence 334445555555443333221 235788899999999999999999999999998888888999999999999999
Q ss_pred HHHHHHHHHhhhhcC--CCcHHHHhhHHHHHHHHhhcccCCCCCCCCcccccccCCchhhcccCCCCCCCcccHHHHHHH
Q 009278 86 YIEAVNSYKKGLDID--PNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRNM 163 (538)
Q Consensus 86 ~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (538)
-..|+...+..+... |+++......+.++...-.. ..+.++-+
T Consensus 373 ~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~-----------------------------------~eegldYA 417 (799)
T KOG4162|consen 373 DSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKL-----------------------------------VEEGLDYA 417 (799)
T ss_pred chHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhh-----------------------------------hhhHHHHH
Confidence 999999999999988 77777666555554432111 01122222
Q ss_pred HHhhhcCCCchhhhhchHHHHHHHHHHHhhhcCCCCCCCccccccccCCCCCCCccccccCCCCCCCCCCccccHHHHHH
Q 009278 164 MKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKEA 243 (538)
Q Consensus 164 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (538)
.+++.... .
T Consensus 418 ~kai~~~~-----------------------------------------------------------------------~ 426 (799)
T KOG4162|consen 418 QKAISLLG-----------------------------------------------------------------------G 426 (799)
T ss_pred HHHHHHhh-----------------------------------------------------------------------h
Confidence 22222110 0
Q ss_pred HHhHHHHHHHHHHHHHHHh-----------cccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 009278 244 KERKEKALKEKEAGNAAYK-----------KKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVE 312 (538)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~-----------~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 312 (538)
....-.+..+..+|.+|-. .....+++..++++++.+|+|+.+.+.++.-|...++...|....+++++
T Consensus 427 ~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~ 506 (799)
T KOG4162|consen 427 QRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALA 506 (799)
T ss_pred hhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 0011233444555555432 22357899999999999999999999999999999999999999999999
Q ss_pred ccccchhhHHHHHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCChh--------HHHhhhhHHHHHHHHHHHHHc
Q 009278 313 RGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPD--------TLKKLNEAEKAKKELEQQEIF 384 (538)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~--------~~~~~~~~~~a~~~~~~~~~~ 384 (538)
.++.+. +.+|..++.++...++ +.+|+...+.++...++.- +-..+++.++++..+...+..
T Consensus 507 l~~~~~------~~~whLLALvlSa~kr----~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~ 576 (799)
T KOG4162|consen 507 LNRGDS------AKAWHLLALVLSAQKR----LKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLAL 576 (799)
T ss_pred hcCCcc------HHHHHHHHHHHhhhhh----hHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHH
Confidence 966543 5667777888888888 9999999999998777632 234567788888777776665
Q ss_pred CCCchHH---------HHHHHHHHHhcCChHHHHHHHHHHHhc--------C-----C------CC-------chhHhHH
Q 009278 385 DPKIADE---------EREKGNEFFKQQKYPEAIQHYTESLRR--------N-----P------KD-------PRTYSNR 429 (538)
Q Consensus 385 ~~~~~~~---------~~~la~~~~~~~~~~~A~~~~~~al~~--------~-----~------~~-------~~~~~~l 429 (538)
-...+.+ ....+.+....++..+|++.+..+... . | .. ...|...
T Consensus 577 we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwlla 656 (799)
T KOG4162|consen 577 WEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLA 656 (799)
T ss_pred HHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHH
Confidence 4322222 222333344455666666666655422 0 1 11 1467788
Q ss_pred HHHHHHhCCchhHHHHHHHHHhcCCCchHHHHHHHHHHHHccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhcc
Q 009278 430 AACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDGVRRCVQQINKAGR 509 (538)
Q Consensus 430 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~ 509 (538)
+..+...+..++|..++.++-.++|..+..|+..|.++...|+.++|.+.|..++.++|+++.....++.++.+.|+..-
T Consensus 657 a~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~l 736 (799)
T KOG4162|consen 657 ADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRL 736 (799)
T ss_pred HHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999996655
Q ss_pred CCCChHHHHHHHHhccCCchhhhhccc
Q 009278 510 GELSPEELKERQAKGMQDPKFRTYSLT 536 (538)
Q Consensus 510 a~~~~~~~~~~~~~~~~~p~~~~~~~~ 536 (538)
|.. ..-.-..+.-||.+.++|+.
T Consensus 737 a~~----~~~L~dalr~dp~n~eaW~~ 759 (799)
T KOG4162|consen 737 AEK----RSLLSDALRLDPLNHEAWYY 759 (799)
T ss_pred HHH----HHHHHHHHhhCCCCHHHHHH
Confidence 542 12444445557777777653
No 58
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.88 E-value=7.1e-20 Score=146.29 Aligned_cols=214 Identities=17% Similarity=0.127 Sum_probs=193.2
Q ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHHH
Q 009278 247 KEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIAR 326 (538)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 326 (538)
.....+...+|.-|+..|++..|...++++++.+|++..+|..+|.+|...|+.+.|.+.|+++++++|++ ++
T Consensus 32 ~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~-------Gd 104 (250)
T COG3063 32 NEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNN-------GD 104 (250)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCc-------cc
Confidence 35677889999999999999999999999999999999999999999999999999999999999999999 88
Q ss_pred HHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcCChH
Q 009278 327 ALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYP 406 (538)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 406 (538)
++.+.|..++..|+ +++|...|++++... ..+..+..+.++|.|..+.|+++
T Consensus 105 VLNNYG~FLC~qg~----~~eA~q~F~~Al~~P------------------------~Y~~~s~t~eN~G~Cal~~gq~~ 156 (250)
T COG3063 105 VLNNYGAFLCAQGR----PEEAMQQFERALADP------------------------AYGEPSDTLENLGLCALKAGQFD 156 (250)
T ss_pred hhhhhhHHHHhCCC----hHHHHHHHHHHHhCC------------------------CCCCcchhhhhhHHHHhhcCCch
Confidence 88888988888888 999999999999733 34566788999999999999999
Q ss_pred HHHHHHHHHHhcCCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCchHHHHHHHHHHHHccCHHHHHHHHHHHhcc
Q 009278 407 EAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKH 486 (538)
Q Consensus 407 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 486 (538)
.|..+|+++++.+|+.+.....++...+..|+|-.|..++++.....+-....+.....+-...|+.+.|-.+=.+....
T Consensus 157 ~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 157 QAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred hHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999998887777777777777888899999998888888888
Q ss_pred CCCCHHHHH
Q 009278 487 DPQNQELLD 495 (538)
Q Consensus 487 ~p~~~~~~~ 495 (538)
.|..++...
T Consensus 237 fP~s~e~q~ 245 (250)
T COG3063 237 FPYSEEYQT 245 (250)
T ss_pred CCCcHHHHh
Confidence 998877654
No 59
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=1.3e-18 Score=150.31 Aligned_cols=428 Identities=15% Similarity=0.103 Sum_probs=307.5
Q ss_pred HHHhhcCCHHHHHHHHHHHhcc--------------------CCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCc
Q 009278 10 NAAFSSGDYEAAVRHFTEAISL--------------------SPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDW 69 (538)
Q Consensus 10 ~~~~~~g~~~~A~~~~~~al~~--------------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 69 (538)
...+...+|..|...|..++.+ .|.+.+..+..+.||...++-+.|+.........- ..
T Consensus 51 ~~~~h~r~yr~a~~~~~~~~~~~~s~~r~s~~~~~s~~~S~~~~~~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~-r~ 129 (564)
T KOG1174|consen 51 NANYKERNYRAALRHFDEIIHKRRLMMRHKNAVLVAIESSYPEFGDAEQRRRAAECYRQIGNTDMAIETLLQVPPTL-RS 129 (564)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhHhhccccccccccccccCCCcccHHHHHHHHHHHHHHccchHHHHHHhcCCccc-cc
Confidence 3444556667777777776653 23456778899999999999999998887654332 34
Q ss_pred hHHHHHHHHHHhhccCHHHHHHHHHhhhhcCCCcHHHHhhHHHHHHHHhhcccCCCCCCCCcccccccCCchhhcccCCC
Q 009278 70 SKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADP 149 (538)
Q Consensus 70 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (538)
+.....++..+-.-++-.++.-.|...+.-.|--......+...-..-..
T Consensus 130 p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~v~g~e------------------------------ 179 (564)
T KOG1174|consen 130 PRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELGVNGNE------------------------------ 179 (564)
T ss_pred hhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHhhcchh------------------------------
Confidence 56677778887777776677777777776655433332222211110000
Q ss_pred CCCCcccHHHHHHHHHhhhcCCCchhhhhchHHHHHHHHHHHhhhcCCCCCCCccccccccCCCCCCCccccccCCCCCC
Q 009278 150 TTRSYLDQDDFRNMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEP 229 (538)
Q Consensus 150 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (538)
.-......+...|...-.+........... .. .
T Consensus 180 ---------~~S~~m~~~~~~~~~dwls~wika~Aq~~~----~~--h-------------------------------- 212 (564)
T KOG1174|consen 180 ---------INSLVMHAATVPDHFDWLSKWIKALAQMFN----FK--H-------------------------------- 212 (564)
T ss_pred ---------hhhhhhhheecCCCccHHHHHHHHHHHHHh----cc--c--------------------------------
Confidence 000000111112221111111000000000 00 0
Q ss_pred CCCCccccHHHHHHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 009278 230 EPEPMELTEEEKEAKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDK 309 (538)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~ 309 (538)
.....+..........+.+...+..+|.+++..|++++|+..|+++..++|......-..|.++...|+++.-......
T Consensus 213 -s~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~ 291 (564)
T KOG1174|consen 213 -SDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDY 291 (564)
T ss_pred -chhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHH
Confidence 0000001111122233567788889999999999999999999999999999999999999999999999988888888
Q ss_pred HHHccccchhhHHHHHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCC--------hhHHHhhhhHHHHHHHHHHH
Q 009278 310 AVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRN--------PDTLKKLNEAEKAKKELEQQ 381 (538)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--------~~~~~~~~~~~~a~~~~~~~ 381 (538)
.+...... +.-|+.-+...+..++ +..|+.+-.+++...+. +..+..+++.++|.-.|..+
T Consensus 292 Lf~~~~~t-------a~~wfV~~~~l~~~K~----~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~A 360 (564)
T KOG1174|consen 292 LFAKVKYT-------ASHWFVHAQLLYDEKK----FERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTA 360 (564)
T ss_pred HHhhhhcc-------hhhhhhhhhhhhhhhh----HHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHH
Confidence 87766444 4445666666777777 99999999999998876 34677889999999999999
Q ss_pred HHcCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHhHHH-HHH-HHhCCchhHHHHHHHHHhcCCCchHH
Q 009278 382 EIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRA-ACY-TKLGAMPEGLKDADKCIELDPTFSKG 459 (538)
Q Consensus 382 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la-~~~-~~~~~~~~A~~~~~~al~~~p~~~~~ 459 (538)
..+.|...+.|..+-.+|...|++.+|...-+.++...|.++.++..+| .++ ..-.--++|.+++++++.+.|....+
T Consensus 361 q~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~A 440 (564)
T KOG1174|consen 361 QMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPA 440 (564)
T ss_pred HhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHH
Confidence 9999999999999999999999999999999999999999999988886 443 33344689999999999999999999
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhccCCCChHHHHHHHHhccC-Cchhhhhcc
Q 009278 460 YTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDGVRRCVQQINKAGRGELSPEELKERQAKGMQ-DPKFRTYSL 535 (538)
Q Consensus 460 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~p~~~~~~~ 535 (538)
-..++.++...|.+.+++..+++.+...|+. ..+..|+.++...+.+++|. +.+..++. ||.....+.
T Consensus 441 V~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~-~LH~~Lgd~~~A~Ne~Q~am-------~~y~~ALr~dP~~~~sl~ 509 (564)
T KOG1174|consen 441 VNLIAELCQVEGPTKDIIKLLEKHLIIFPDV-NLHNHLGDIMRAQNEPQKAM-------EYYYKALRQDPKSKRTLR 509 (564)
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHhhcccc-HHHHHHHHHHHHhhhHHHHH-------HHHHHHHhcCccchHHHH
Confidence 9999999999999999999999999999874 57778888888888777766 67777776 887766553
No 60
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.87 E-value=1.1e-19 Score=163.22 Aligned_cols=218 Identities=16% Similarity=0.095 Sum_probs=176.8
Q ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHHH
Q 009278 247 KEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIAR 326 (538)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 326 (538)
+..+..++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++++|++ ..
T Consensus 61 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~-------~~ 133 (296)
T PRK11189 61 EERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTY-------NY 133 (296)
T ss_pred HhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-------HH
Confidence 35678899999999999999999999999999999999999999999999999999999999999999998 66
Q ss_pred HHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcCChH
Q 009278 327 ALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYP 406 (538)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 406 (538)
++..+|.++...++ +++|+..+++++. .+|+++.... ...+....++++
T Consensus 134 a~~~lg~~l~~~g~----~~eA~~~~~~al~--------------------------~~P~~~~~~~-~~~l~~~~~~~~ 182 (296)
T PRK11189 134 AYLNRGIALYYGGR----YELAQDDLLAFYQ--------------------------DDPNDPYRAL-WLYLAESKLDPK 182 (296)
T ss_pred HHHHHHHHHHHCCC----HHHHHHHHHHHHH--------------------------hCCCCHHHHH-HHHHHHccCCHH
Confidence 77888888888888 9999999999999 6777663211 122345678899
Q ss_pred HHHHHHHHHHhcCCCCchhHhHHHHHHHHhCCchhHHHHHHHHH-------hcCCCchHHHHHHHHHHHHccCHHHHHHH
Q 009278 407 EAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCI-------ELDPTFSKGYTRKGAIQFFLKEYDKALET 479 (538)
Q Consensus 407 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al-------~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 479 (538)
+|+..|.+++...+.+ .|. .+.++..+|++.++ ..++.+. ++.|..+.+|+.+|.++...|++++|+.+
T Consensus 183 ~A~~~l~~~~~~~~~~--~~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~ 258 (296)
T PRK11189 183 QAKENLKQRYEKLDKE--QWG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAAL 258 (296)
T ss_pred HHHHHHHHHHhhCCcc--ccH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 9999998877544322 232 46666778887654 2343333 55677788999999999999999999999
Q ss_pred HHHHhccCC-CCHHHHHHHHHHHHHhhh
Q 009278 480 YQEGLKHDP-QNQELLDGVRRCVQQINK 506 (538)
Q Consensus 480 ~~~al~~~p-~~~~~~~~l~~~~~~~~~ 506 (538)
|+++++.+| +..+....+..+....++
T Consensus 259 ~~~Al~~~~~~~~e~~~~~~e~~~~~~~ 286 (296)
T PRK11189 259 FKLALANNVYNFVEHRYALLELALLGQD 286 (296)
T ss_pred HHHHHHhCCchHHHHHHHHHHHHHHHhh
Confidence 999999996 667777666666555444
No 61
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.86 E-value=4.9e-18 Score=142.32 Aligned_cols=280 Identities=15% Similarity=0.166 Sum_probs=240.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHHHHHhhccCHHHHHHHHHhhhhcCCCcHHHHhhHHHHHHHHh
Q 009278 39 YSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAAS 118 (538)
Q Consensus 39 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 118 (538)
-|..|.-++-.++.++|+..|...++.+|...++.+.+|.++...|..+.|+..-+..++ .|+-+..
T Consensus 38 ~Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~------------ 104 (389)
T COG2956 38 DYVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFE------------ 104 (389)
T ss_pred HHHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchH------------
Confidence 356788888889999999999999999999999999999999999999999987766554 4543221
Q ss_pred hcccCCCCCCCCcccccccCCchhhcccCCCCCCCcccHHHHHHHHHhhhcCCCchhhhhchHHHHHHHHHHHhhhcCCC
Q 009278 119 ASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRNMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGP 198 (538)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (538)
T Consensus 105 -------------------------------------------------------------------------------- 104 (389)
T COG2956 105 -------------------------------------------------------------------------------- 104 (389)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCccccccccCCCCCCCccccccCCCCCCCCCCccccHHHHHHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Q 009278 199 TGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKEAKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALE 278 (538)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 278 (538)
....+...+|.-|...|-++.|...|....+
T Consensus 105 -------------------------------------------------qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~d 135 (389)
T COG2956 105 -------------------------------------------------QRLLALQQLGRDYMAAGLLDRAEDIFNQLVD 135 (389)
T ss_pred -------------------------------------------------HHHHHHHHHHHHHHHhhhhhHHHHHHHHHhc
Confidence 3455677789999999999999999999988
Q ss_pred hCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhc
Q 009278 279 LDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTE 358 (538)
Q Consensus 279 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 358 (538)
...--..+...+..+|....+|++|++..++..++.+.. ....++..|..++..+....+ .+.|+..+.++++
T Consensus 136 e~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~--~~~eIAqfyCELAq~~~~~~~----~d~A~~~l~kAlq- 208 (389)
T COG2956 136 EGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQT--YRVEIAQFYCELAQQALASSD----VDRARELLKKALQ- 208 (389)
T ss_pred chhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCcc--chhHHHHHHHHHHHHHhhhhh----HHHHHHHHHHHHh-
Confidence 776678899999999999999999999999999988865 334457888888887777777 8888888888888
Q ss_pred CCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-chhHhHHHHHHHHhC
Q 009278 359 HRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKD-PRTYSNRAACYTKLG 437 (538)
Q Consensus 359 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~~~~ 437 (538)
.+|+...+-..+|.+....|+|+.|++.++.+++.+|.. +.+.-.+..||..+|
T Consensus 209 -------------------------a~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg 263 (389)
T COG2956 209 -------------------------ADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLG 263 (389)
T ss_pred -------------------------hCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhC
Confidence 899999999999999999999999999999999999986 678889999999999
Q ss_pred CchhHHHHHHHHHhcCCCchHHHHHHHHHHHHccCHHHHHHHHHHHhccCCCCHHH
Q 009278 438 AMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQEL 493 (538)
Q Consensus 438 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 493 (538)
+.++...++.++++..++ +.+...++..-....-.+.|..++.+-+...|+-...
T Consensus 264 ~~~~~~~fL~~~~~~~~g-~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf 318 (389)
T COG2956 264 KPAEGLNFLRRAMETNTG-ADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGF 318 (389)
T ss_pred CHHHHHHHHHHHHHccCC-ccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHH
Confidence 999999999999999876 5666777877777777889999999999999974443
No 62
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.86 E-value=2.2e-19 Score=158.38 Aligned_cols=206 Identities=20% Similarity=0.200 Sum_probs=184.6
Q ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHHHH
Q 009278 248 EKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARA 327 (538)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 327 (538)
..+..+..+|..+...|++++|+..++++++.+|++..++..+|.++...|++++|+..+++++...|.+ ...
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-------~~~ 101 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNN-------GDV 101 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-------HHH
Confidence 4678899999999999999999999999999999999999999999999999999999999999999887 456
Q ss_pred HHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcCChHH
Q 009278 328 LTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPE 407 (538)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 407 (538)
+..+|.++...++ +++|+..+++++... ..+.....+..+|.++...|++++
T Consensus 102 ~~~~~~~~~~~g~----~~~A~~~~~~~~~~~------------------------~~~~~~~~~~~l~~~~~~~g~~~~ 153 (234)
T TIGR02521 102 LNNYGTFLCQQGK----YEQAMQQFEQAIEDP------------------------LYPQPARSLENAGLCALKAGDFDK 153 (234)
T ss_pred HHHHHHHHHHccc----HHHHHHHHHHHHhcc------------------------ccccchHHHHHHHHHHHHcCCHHH
Confidence 6677777777777 999999999998732 234566778889999999999999
Q ss_pred HHHHHHHHHhcCCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCchHHHHHHHHHHHHccCHHHHHHHHHHHhccC
Q 009278 408 AIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHD 487 (538)
Q Consensus 408 A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 487 (538)
|...+.+++...|.++.++..+|.++...|++++|..++++++...|.++..+..++.++...|+.++|..+.+.+....
T Consensus 154 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 233 (234)
T TIGR02521 154 AEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLF 233 (234)
T ss_pred HHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999988888999999999999999999999988877665
Q ss_pred C
Q 009278 488 P 488 (538)
Q Consensus 488 p 488 (538)
|
T Consensus 234 ~ 234 (234)
T TIGR02521 234 P 234 (234)
T ss_pred c
Confidence 4
No 63
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.86 E-value=2.2e-19 Score=143.52 Aligned_cols=211 Identities=19% Similarity=0.242 Sum_probs=185.3
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCChh
Q 009278 284 ISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPD 363 (538)
Q Consensus 284 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 363 (538)
..+...+|.-|+..|++..|..-++++++.+|++ ..++..++.+|...|+ .+.|.+.|+++++
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~-------~~a~~~~A~~Yq~~Ge----~~~A~e~YrkAls------ 97 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSY-------YLAHLVRAHYYQKLGE----NDLADESYRKALS------ 97 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc-------HHHHHHHHHHHHHcCC----hhhHHHHHHHHHh------
Confidence 3678899999999999999999999999999998 5566666666666666 9999999999999
Q ss_pred HHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhc--CCCCchhHhHHHHHHHHhCCchh
Q 009278 364 TLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRR--NPKDPRTYSNRAACYTKLGAMPE 441 (538)
Q Consensus 364 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~ 441 (538)
++|++.+++++.|..++.+|++++|...|++++.. .|..+.+|-++|.|..+.|+++.
T Consensus 98 --------------------l~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~ 157 (250)
T COG3063 98 --------------------LAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQ 157 (250)
T ss_pred --------------------cCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchh
Confidence 89999999999999999999999999999999974 35567899999999999999999
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHHccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhccCCCChHHHHHHH
Q 009278 442 GLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDGVRRCVQQINKAGRGELSPEELKERQ 521 (538)
Q Consensus 442 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 521 (538)
|..+|+++++.+|+.+.+...++..++..|++..|..++++....-+-..+.+....++-..+|+...+... ...+
T Consensus 158 A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y----~~qL 233 (250)
T COG3063 158 AEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRY----QAQL 233 (250)
T ss_pred HHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHH----HHHH
Confidence 999999999999999999999999999999999999999999998888888888888888899988777643 5556
Q ss_pred HhccC-Cchhhhhcc
Q 009278 522 AKGMQ-DPKFRTYSL 535 (538)
Q Consensus 522 ~~~~~-~p~~~~~~~ 535 (538)
.+... .++.+...-
T Consensus 234 ~r~fP~s~e~q~f~~ 248 (250)
T COG3063 234 QRLFPYSEEYQTFLA 248 (250)
T ss_pred HHhCCCcHHHHhHhc
Confidence 55555 666665543
No 64
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.85 E-value=9.3e-17 Score=164.95 Aligned_cols=382 Identities=11% Similarity=0.048 Sum_probs=247.1
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHhccCC--cchHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHHHHHhh
Q 009278 5 AKAKGNAAFSSGDYEAAVRHFTEAISLSP--DNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLG 82 (538)
Q Consensus 5 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 82 (538)
+...=..+.+.|++++|+..|+.....+. .+...+..+...+...|..++|...++.... | +...|..+-..+..
T Consensus 373 ~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~--p-d~~Tyn~LL~a~~k 449 (1060)
T PLN03218 373 YIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN--P-TLSTFNMLMSVCAS 449 (1060)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC--C-CHHHHHHHHHHHHh
Confidence 34444566678999999999998877653 2334444556667788889999888877654 4 45667777788888
Q ss_pred ccCHHHHHHHHHhhhhcCC-CcHHHHhhHHHHHHHHhhcccCCCCCCCCcccccccCCchhhcccCCCCCCCcccHHHHH
Q 009278 83 LQDYIEAVNSYKKGLDIDP-NNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFR 161 (538)
Q Consensus 83 ~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (538)
.|++++|...|..+.+... .+...+..+...+.+.|.. +.+..
T Consensus 450 ~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~v------------------------------------d~A~~ 493 (1060)
T PLN03218 450 SQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKV------------------------------------DAMFE 493 (1060)
T ss_pred CcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCH------------------------------------HHHHH
Confidence 8999999999988876543 3455667777777766554 22222
Q ss_pred HHHHhhhc--CCCch------hhhhchHHHHHHHHHHHhhhcCCCCCCCccccccccCCCCCCCccccccCCCCCCCCCC
Q 009278 162 NMMKDIQR--NPNNL------NLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEP 233 (538)
Q Consensus 162 ~~~~~l~~--~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (538)
.+.+.... .|+.. ..+...++...+...+..+....
T Consensus 494 vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~G------------------------------------ 537 (1060)
T PLN03218 494 VFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKN------------------------------------ 537 (1060)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcC------------------------------------
Confidence 22222221 12211 11222222333333222221000
Q ss_pred ccccHHHHHHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhh----CCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 009278 234 MELTEEEKEAKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALEL----DDEDISYLTNRAAVYLEMGKYEECIKDCDK 309 (538)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~~~~~~A~~~~~~ 309 (538)
...+...|..+...+.+.|++++|..+|.++... .| +...+..+...|.+.|++++|.+.|+.
T Consensus 538 ------------v~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~P-D~vTynaLI~ay~k~G~ldeA~elf~~ 604 (1060)
T PLN03218 538 ------------VKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDP-DHITVGALMKACANAGQVDRAKEVYQM 604 (1060)
T ss_pred ------------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 0113456777777788888888888888877652 33 356677777778888888888888888
Q ss_pred HHHccccchhhHHHHHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcC--CChh-------HHHhhhhHHHHHHHHHH
Q 009278 310 AVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEH--RNPD-------TLKKLNEAEKAKKELEQ 380 (538)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~-------~~~~~~~~~~a~~~~~~ 380 (538)
+.+...... ...|..+...+.+.|+ +++|+..|++..... |+.. .+...|++++|.+.+..
T Consensus 605 M~e~gi~p~------~~tynsLI~ay~k~G~----~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~e 674 (1060)
T PLN03218 605 IHEYNIKGT------PEVYTIAVNSCSQKGD----WDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQD 674 (1060)
T ss_pred HHHcCCCCC------hHHHHHHHHHHHhcCC----HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 777542111 3445555556666666 888888888777653 3322 34456777888888887
Q ss_pred HHHcC-CCchHHHHHHHHHHHhcCChHHHHHHHHHHHhc--CCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhc--CCC
Q 009278 381 QEIFD-PKIADEEREKGNEFFKQQKYPEAIQHYTESLRR--NPKDPRTYSNRAACYTKLGAMPEGLKDADKCIEL--DPT 455 (538)
Q Consensus 381 ~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~ 455 (538)
+.+.. +-+...+..+...|.+.|++++|..+|++.... .| +...|..+...|.+.|++++|+++|++.... .|+
T Consensus 675 M~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~P-dvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd 753 (1060)
T PLN03218 675 ARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRP-TVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPN 753 (1060)
T ss_pred HHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 77653 345667777788888888888888888776543 33 4567777888888888888888888876654 343
Q ss_pred chHHHHHHHHHHHHccCHHHHHHHHHHHhcc
Q 009278 456 FSKGYTRKGAIQFFLKEYDKALETYQEGLKH 486 (538)
Q Consensus 456 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 486 (538)
..+|..+...+.+.|++++|...+.++.+.
T Consensus 754 -~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~ 783 (1060)
T PLN03218 754 -TITYSILLVASERKDDADVGLDLLSQAKED 783 (1060)
T ss_pred -HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 556666667777888888888888887764
No 65
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.85 E-value=4.2e-18 Score=173.01 Aligned_cols=221 Identities=11% Similarity=0.010 Sum_probs=177.3
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHHHHH
Q 009278 250 ALKEKEAGNAAYKKKEFEKAIEHYSSALELD-DEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARAL 328 (538)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (538)
...+..+...+.+.|++++|...+..+++.. +.+..++..+...|.+.|++++|...|++..+ |+ ...|
T Consensus 325 ~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~--~d--------~~t~ 394 (697)
T PLN03081 325 QFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR--KN--------LISW 394 (697)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC--CC--------eeeH
Confidence 4467778888889999999999999988876 55677888899999999999999999988754 32 3456
Q ss_pred HHhHHHHHHhhhcccChhHHHHHHHHHHhcC--CChh-------HHHhhhhHHHHHHHHHHHHHcCCC--chHHHHHHHH
Q 009278 329 TRKGTALVKMAKCSKDYEPAIETFQKALTEH--RNPD-------TLKKLNEAEKAKKELEQQEIFDPK--IADEEREKGN 397 (538)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~-------~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~la~ 397 (538)
..+...|...|+ .++|++.|++..... |+.. .+...|..++|...|+.+.+..+- +...|..+..
T Consensus 395 n~lI~~y~~~G~----~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~ 470 (697)
T PLN03081 395 NALIAGYGNHGR----GTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIE 470 (697)
T ss_pred HHHHHHHHHcCC----HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHH
Confidence 666666677777 999999999988754 3332 234568899999999988764332 3456888999
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCchHHHHHHHHHHHHccCHHHHH
Q 009278 398 EFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKAL 477 (538)
Q Consensus 398 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 477 (538)
.+.+.|++++|.+.+++. ...| +..+|..+...+...|+++.|...+++.+++.|++...|..++.+|.+.|++++|.
T Consensus 471 ~l~r~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~ 548 (697)
T PLN03081 471 LLGREGLLDEAYAMIRRA-PFKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAA 548 (697)
T ss_pred HHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHH
Confidence 999999999999988764 2333 45678889999999999999999999999999998889999999999999999999
Q ss_pred HHHHHHhcc
Q 009278 478 ETYQEGLKH 486 (538)
Q Consensus 478 ~~~~~al~~ 486 (538)
+.++...+.
T Consensus 549 ~v~~~m~~~ 557 (697)
T PLN03081 549 KVVETLKRK 557 (697)
T ss_pred HHHHHHHHc
Confidence 999887643
No 66
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.85 E-value=1.1e-17 Score=169.87 Aligned_cols=406 Identities=11% Similarity=-0.004 Sum_probs=282.9
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHhccCC--cchHHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CCCchHHHHHHHHHH
Q 009278 5 AKAKGNAAFSSGDYEAAVRHFTEAISLSP--DNHVLYSNRSAAHASLHNYADALADAKKTVEL--KPDWSKGYSRLGAAH 80 (538)
Q Consensus 5 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~ 80 (538)
|...-..+...|++++|+..|+.+....| -+..++..+..++.+.++++.|...+...... .| +...+..+..+|
T Consensus 90 ~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~-~~~~~n~Li~~y 168 (697)
T PLN03081 90 LCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEP-DQYMMNRVLLMH 168 (697)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCc-chHHHHHHHHHH
Confidence 44455667889999999999998876543 35677888888899999999999988887754 45 467788888999
Q ss_pred hhccCHHHHHHHHHhhhhcCCCcHHHHhhHHHHHHHHhhcccCCCCCCCCcccccccCCchhhcccCCCCCCCcccHHHH
Q 009278 81 LGLQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDF 160 (538)
Q Consensus 81 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (538)
.+.|++++|...|++..+ | +...|..+...+...|+.. .++
T Consensus 169 ~k~g~~~~A~~lf~~m~~--~-~~~t~n~li~~~~~~g~~~------------------------------------~A~ 209 (697)
T PLN03081 169 VKCGMLIDARRLFDEMPE--R-NLASWGTIIGGLVDAGNYR------------------------------------EAF 209 (697)
T ss_pred hcCCCHHHHHHHHhcCCC--C-CeeeHHHHHHHHHHCcCHH------------------------------------HHH
Confidence 999999999999998754 3 4556677777777766542 222
Q ss_pred HHHHHhhhcC--CCc-----------------------------------------hhhhhchHHHHHHHHHHHhhhcCC
Q 009278 161 RNMMKDIQRN--PNN-----------------------------------------LNLYLKDQRVMQALGVLLNVKFKG 197 (538)
Q Consensus 161 ~~~~~~l~~~--~~~-----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 197 (538)
..+.+..... |+. +..|...+++..+...+..+
T Consensus 210 ~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m---- 285 (697)
T PLN03081 210 ALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGM---- 285 (697)
T ss_pred HHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhC----
Confidence 2222222111 110 00011111111111111100
Q ss_pred CCCCCccccccccCCCCCCCccccccCCCCCCCCCCccccHHHHHHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Q 009278 198 PTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKEAKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSAL 277 (538)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 277 (538)
.+.+...|..+...|...|++++|+..|++..
T Consensus 286 ------------------------------------------------~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~ 317 (697)
T PLN03081 286 ------------------------------------------------PEKTTVAWNSMLAGYALHGYSEEALCLYYEMR 317 (697)
T ss_pred ------------------------------------------------CCCChhHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 11244567777777777888888888887776
Q ss_pred hhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc-ccchhhHHHHHHHHHHhHHHHHHhhhcccChhHHHHHHHHH
Q 009278 278 ELD-DEDISYLTNRAAVYLEMGKYEECIKDCDKAVERG-RELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKA 355 (538)
Q Consensus 278 ~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 355 (538)
+.. .-+...+..+...+.+.|++++|...+..+++.. +.+ ..++..+...|.+.|+ +++|...|++.
T Consensus 318 ~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d-------~~~~~~Li~~y~k~G~----~~~A~~vf~~m 386 (697)
T PLN03081 318 DSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLD-------IVANTALVDLYSKWGR----MEDARNVFDRM 386 (697)
T ss_pred HcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCC-------eeehHHHHHHHHHCCC----HHHHHHHHHhC
Confidence 543 2245567777777777788888887777777654 222 2344455555666666 88888888877
Q ss_pred HhcCCC-----hhHHHhhhhHHHHHHHHHHHHHc--CCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC--CchhH
Q 009278 356 LTEHRN-----PDTLKKLNEAEKAKKELEQQEIF--DPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPK--DPRTY 426 (538)
Q Consensus 356 ~~~~~~-----~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~ 426 (538)
...+.. ...+...|+.++|++.|+++... .| +...+..+...+...|+.++|..+|+...+..+- +...|
T Consensus 387 ~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~P-d~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y 465 (697)
T PLN03081 387 PRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAP-NHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHY 465 (697)
T ss_pred CCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccch
Confidence 542211 12456678889999999887764 33 3455677777888899999999999888764332 44678
Q ss_pred hHHHHHHHHhCCchhHHHHHHHHHhcCCCchHHHHHHHHHHHHccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhh
Q 009278 427 SNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDGVRRCVQQINK 506 (538)
Q Consensus 427 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 506 (538)
..+..++.+.|++++|.+.+++. ...| +..+|..+...+...|+++.|...+++.+++.|++...+..+..+|...|+
T Consensus 466 ~~li~~l~r~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~ 543 (697)
T PLN03081 466 ACMIELLGREGLLDEAYAMIRRA-PFKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGR 543 (697)
T ss_pred HhHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCC
Confidence 88999999999999999998764 2344 366788999999999999999999999999999999999999999999999
Q ss_pred hccCCCChHH
Q 009278 507 AGRGELSPEE 516 (538)
Q Consensus 507 ~~~a~~~~~~ 516 (538)
+++|...++.
T Consensus 544 ~~~A~~v~~~ 553 (697)
T PLN03081 544 QAEAAKVVET 553 (697)
T ss_pred HHHHHHHHHH
Confidence 9999866443
No 67
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.85 E-value=8e-17 Score=147.48 Aligned_cols=439 Identities=14% Similarity=0.107 Sum_probs=287.0
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHHHhccCCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHHHHHhh
Q 009278 3 DEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLG 82 (538)
Q Consensus 3 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 82 (538)
+.+-.+|..+...|+-++|....+.++..++.+..+|..+|.++...++|++|+++|..|+.+.|+|...|..++.+..+
T Consensus 42 eslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~Q 121 (700)
T KOG1156|consen 42 ESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQ 121 (700)
T ss_pred hhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 56777899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHHHHhhhhcCCCcHHHHhhHHHHHHHHhhcccCCCCCCCCcccccccCCchhhcccCCCCCCCcccHHHHHH
Q 009278 83 LQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRN 162 (538)
Q Consensus 83 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (538)
+++++-....-.+.++..|.....|..++..+...|....+ .+.+..
T Consensus 122 mRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A---------------------------------~~il~e 168 (700)
T KOG1156|consen 122 MRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMA---------------------------------LEILEE 168 (700)
T ss_pred HHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH---------------------------------HHHHHH
Confidence 99999999999999999999999999999998888776321 122233
Q ss_pred HHHhhhcCCCchhhhhchHHHHHHHHHHHhhhcCCCCCCCccccccccCCCCCCCccccccCCCCCCCCCCccccHHHHH
Q 009278 163 MMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKE 242 (538)
Q Consensus 163 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (538)
+.+.....|.....-.....+.... .+.... ....+++.....
T Consensus 169 f~~t~~~~~s~~~~e~se~~Ly~n~-i~~E~g------------------------------------~~q~ale~L~~~ 211 (700)
T KOG1156|consen 169 FEKTQNTSPSKEDYEHSELLLYQNQ-ILIEAG------------------------------------SLQKALEHLLDN 211 (700)
T ss_pred HHHhhccCCCHHHHHHHHHHHHHHH-HHHHcc------------------------------------cHHHHHHHHHhh
Confidence 3333332222211110000000000 000000 001112222222
Q ss_pred HHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHH-HHHHHHHHccccchhhH
Q 009278 243 AKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECI-KDCDKAVERGRELRSDF 321 (538)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~-~~~~~~~~~~~~~~~~~ 321 (538)
.....+........|.++...+++++|+..|...+..+|++...+..+-.++..-.+--+++ ..|...-+..|....
T Consensus 212 e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~-- 289 (700)
T KOG1156|consen 212 EKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHEC-- 289 (700)
T ss_pred hhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCccccc--
Confidence 23333455566677888888999999999999999999988888887777775333334444 555555555554321
Q ss_pred HHHHHHHHHhHHHHHHhhhcccChhHHH-HHHHHHHhcCCC--hhHHHhhh-------hHHHHHHHHHHHHHcC------
Q 009278 322 KMIARALTRKGTALVKMAKCSKDYEPAI-ETFQKALTEHRN--PDTLKKLN-------EAEKAKKELEQQEIFD------ 385 (538)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~-~~~~~~~~~~~~--~~~~~~~~-------~~~~a~~~~~~~~~~~------ 385 (538)
..+++.....-.. +.+.+ .++...++..-. -..+..+. -.++-+..+...+.-.
T Consensus 290 ------p~Rlplsvl~~ee----l~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~ 359 (700)
T KOG1156|consen 290 ------PRRLPLSVLNGEE----LKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFL 359 (700)
T ss_pred ------chhccHHHhCcch----hHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcc
Confidence 1111111111111 22221 122222222100 00011111 1111111222211111
Q ss_pred ------CCc--hHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCch
Q 009278 386 ------PKI--ADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFS 457 (538)
Q Consensus 386 ------~~~--~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 457 (538)
|-. ...++.++.-+...|+++.|..+.+.|+...|.-++.+...|+++...|++++|..+++.+.+++-.+.
T Consensus 360 D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR 439 (700)
T KOG1156|consen 360 DDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADR 439 (700)
T ss_pred cccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhH
Confidence 222 234567788888999999999999999999999999999999999999999999999999999987666
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHhccCCC---------CHHHHHHHHHHHHHhhhhccCCCChHHHHHHHHh
Q 009278 458 KGYTRKGAIQFFLKEYDKALETYQEGLKHDPQ---------NQELLDGVRRCVQQINKAGRGELSPEELKERQAK 523 (538)
Q Consensus 458 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 523 (538)
.....-|....+.++.++|.+...+--...-+ -.+....-|.++.++|++..|..-|-...+++..
T Consensus 440 ~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k~~~~ 514 (700)
T KOG1156|consen 440 AINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEKHYKT 514 (700)
T ss_pred HHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 66557888888999999998888765543311 1222333456677788887665444444444443
No 68
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.84 E-value=1.2e-18 Score=153.72 Aligned_cols=201 Identities=17% Similarity=0.183 Sum_probs=172.5
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHHHhccCCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHHHHHh
Q 009278 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHL 81 (538)
Q Consensus 2 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 81 (538)
+..++..|..++..|++++|+..|++++..+|++..++..+|.++...|++++|+..+++++...|.+..++..+|.++.
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 110 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLC 110 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence 56788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCHHHHHHHHHhhhhcCCCcHHHHhhHHHHHHHHhhcccCCCCCCCCcccccccCCchhhcccCCCCCCCcccHHHHH
Q 009278 82 GLQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFR 161 (538)
Q Consensus 82 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (538)
..|++++|+..|++++...+..
T Consensus 111 ~~g~~~~A~~~~~~~~~~~~~~---------------------------------------------------------- 132 (234)
T TIGR02521 111 QQGKYEQAMQQFEQAIEDPLYP---------------------------------------------------------- 132 (234)
T ss_pred HcccHHHHHHHHHHHHhccccc----------------------------------------------------------
Confidence 9999999999999988642210
Q ss_pred HHHHhhhcCCCchhhhhchHHHHHHHHHHHhhhcCCCCCCCccccccccCCCCCCCccccccCCCCCCCCCCccccHHHH
Q 009278 162 NMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEK 241 (538)
Q Consensus 162 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (538)
T Consensus 133 -------------------------------------------------------------------------------- 132 (234)
T TIGR02521 133 -------------------------------------------------------------------------------- 132 (234)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhH
Q 009278 242 EAKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDF 321 (538)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 321 (538)
.....+..+|.++...|++++|...+.+++..+|+++.++..+|.++...|++++|+..+++++...|.++
T Consensus 133 ------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~--- 203 (234)
T TIGR02521 133 ------QPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTA--- 203 (234)
T ss_pred ------cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---
Confidence 12233556788999999999999999999999999999999999999999999999999999999877653
Q ss_pred HHHHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHh
Q 009278 322 KMIARALTRKGTALVKMAKCSKDYEPAIETFQKALT 357 (538)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 357 (538)
..+...+.++...++ .++|..+.+.+..
T Consensus 204 ----~~~~~~~~~~~~~~~----~~~a~~~~~~~~~ 231 (234)
T TIGR02521 204 ----ESLWLGIRIARALGD----VAAAQRYGAQLQK 231 (234)
T ss_pred ----HHHHHHHHHHHHHhh----HHHHHHHHHHHHh
Confidence 334455666666666 8888888776655
No 69
>PLN02789 farnesyltranstransferase
Probab=99.84 E-value=1.9e-18 Score=154.07 Aligned_cols=223 Identities=12% Similarity=0.066 Sum_probs=192.5
Q ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHccccchhhHHHHH
Q 009278 247 KEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMG-KYEECIKDCDKAVERGRELRSDFKMIA 325 (538)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~~ 325 (538)
+....++..+-.++...+.+++|+..+.+++.++|.+..+|..++.++..+| ++++++..+++++..+|++ .
T Consensus 34 ~~~~~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npkn-------y 106 (320)
T PLN02789 34 PEFREAMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKN-------Y 106 (320)
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcc-------h
Confidence 4556666666677888999999999999999999999999999999999998 6899999999999999998 4
Q ss_pred HHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcCCh
Q 009278 326 RALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKY 405 (538)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 405 (538)
.+|...+.+...++. ...++++.++++++. .+|++..+|..++.++...|++
T Consensus 107 qaW~~R~~~l~~l~~--~~~~~el~~~~kal~--------------------------~dpkNy~AW~~R~w~l~~l~~~ 158 (320)
T PLN02789 107 QIWHHRRWLAEKLGP--DAANKELEFTRKILS--------------------------LDAKNYHAWSHRQWVLRTLGGW 158 (320)
T ss_pred HHhHHHHHHHHHcCc--hhhHHHHHHHHHHHH--------------------------hCcccHHHHHHHHHHHHHhhhH
Confidence 556666655555443 002556666666666 9999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCchhHhHHHHHHHHh---CCc----hhHHHHHHHHHhcCCCchHHHHHHHHHHHH----ccCHH
Q 009278 406 PEAIQHYTESLRRNPKDPRTYSNRAACYTKL---GAM----PEGLKDADKCIELDPTFSKGYTRKGAIQFF----LKEYD 474 (538)
Q Consensus 406 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~---~~~----~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~ 474 (538)
++|++++.++|+.+|.+..+|+.++.+...+ |.+ ++++.+..++|..+|++..+|..++.++.. .++..
T Consensus 159 ~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~ 238 (320)
T PLN02789 159 EDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDP 238 (320)
T ss_pred HHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccch
Confidence 9999999999999999999999999998776 333 478899999999999999999999999988 45677
Q ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHh
Q 009278 475 KALETYQEGLKHDPQNQELLDGVRRCVQQI 504 (538)
Q Consensus 475 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 504 (538)
+|...+.+++...|.++.++..|+.++...
T Consensus 239 ~~~~~~~~~~~~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 239 EVSSVCLEVLSKDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred hHHHHHHHhhcccCCcHHHHHHHHHHHHhh
Confidence 899999999999999999999999999863
No 70
>PLN03077 Protein ECB2; Provisional
Probab=99.84 E-value=8.6e-17 Score=167.60 Aligned_cols=252 Identities=10% Similarity=-0.004 Sum_probs=189.6
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHHHHH
Q 009278 249 KALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARAL 328 (538)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (538)
...++..+...|.+.|++++|.+.|++..+ .+...|..+...|...|++++|+..|++.....+.+...+..+..++
T Consensus 423 ~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~ 499 (857)
T PLN03077 423 YVVVANALIEMYSKCKCIDKALEVFHNIPE---KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSAC 499 (857)
T ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHH
Confidence 445677788899999999999999988654 35667888889999999999999999998764332322332222222
Q ss_pred HHh----------------------------HHHHHHhhhcccChhHHHHHHHHHHhcCCChh-------HHHhhhhHHH
Q 009278 329 TRK----------------------------GTALVKMAKCSKDYEPAIETFQKALTEHRNPD-------TLKKLNEAEK 373 (538)
Q Consensus 329 ~~~----------------------------~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~-------~~~~~~~~~~ 373 (538)
... -..|.+.|+ .++|...|+.. .++.. .+...|+.++
T Consensus 500 ~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~----~~~A~~~f~~~---~~d~~s~n~lI~~~~~~G~~~~ 572 (857)
T PLN03077 500 ARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGR----MNYAWNQFNSH---EKDVVSWNILLTGYVAHGKGSM 572 (857)
T ss_pred hhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCC----HHHHHHHHHhc---CCChhhHHHHHHHHHHcCCHHH
Confidence 222 244555555 88888888776 33322 3456788899
Q ss_pred HHHHHHHHHHc--CCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC--CchhHhHHHHHHHHhCCchhHHHHHHHH
Q 009278 374 AKKELEQQEIF--DPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPK--DPRTYSNRAACYTKLGAMPEGLKDADKC 449 (538)
Q Consensus 374 a~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~a 449 (538)
|+..|+++... .|+. ..+..+-..+.+.|++++|..+|+...+..+- +...|..+..++.+.|++++|.+.+++.
T Consensus 573 A~~lf~~M~~~g~~Pd~-~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m 651 (857)
T PLN03077 573 AVELFNRMVESGVNPDE-VTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM 651 (857)
T ss_pred HHHHHHHHHHcCCCCCc-ccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 99999988763 4443 44555556788889999999999888744332 4567888999999999999999998875
Q ss_pred HhcCCCchHHHHHHHHHHHHccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhccCCCC
Q 009278 450 IELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDGVRRCVQQINKAGRGELS 513 (538)
Q Consensus 450 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~ 513 (538)
...|+ +.+|..+-..+...|+.+.+....++++++.|++...+..++.+|...|+++++...
T Consensus 652 -~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~v 713 (857)
T PLN03077 652 -PITPD-PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARV 713 (857)
T ss_pred -CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHH
Confidence 35565 667777777788889999999999999999999999999999999999999988755
No 71
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=2.9e-15 Score=136.01 Aligned_cols=410 Identities=16% Similarity=0.096 Sum_probs=279.3
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHHHhccCCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHHHHHhh
Q 009278 3 DEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLG 82 (538)
Q Consensus 3 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 82 (538)
++++..-..+...|+|++|+....+++...|++..+....-.|+++.++|++|+...++-....-.+ ...+..+.|.++
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~-~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVIN-SFFFEKAYCEYR 91 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcc-hhhHHHHHHHHH
Confidence 4677778889999999999999999999999999999999999999999999996555433222222 222788999999
Q ss_pred ccCHHHHHHHHHhhhhcCCCcHHHHhhHHHHHHHHhhcccCCCCCCCCcccccccCCchhhcccCCCCCCCcccHHHHHH
Q 009278 83 LQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRN 162 (538)
Q Consensus 83 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (538)
++..++|+..++ ..++.+.......+++..+.+++ +.+++.
T Consensus 92 lnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~y------------------------------------dealdi 132 (652)
T KOG2376|consen 92 LNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERY------------------------------------DEALDI 132 (652)
T ss_pred cccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhH------------------------------------HHHHHH
Confidence 999999999998 45666677778888888888776 666777
Q ss_pred HHHhhhcCCCchhhhhchH--HHHHHHHH-HHhhhcCCCCCCCccccccccCCCCCCCccccccCCCCCCCCCCccccHH
Q 009278 163 MMKDIQRNPNNLNLYLKDQ--RVMQALGV-LLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEE 239 (538)
Q Consensus 163 ~~~~l~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (538)
+...+..+.++.+.-.... .....+.. +....
T Consensus 133 Y~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v--------------------------------------------- 167 (652)
T KOG2376|consen 133 YQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSV--------------------------------------------- 167 (652)
T ss_pred HHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhc---------------------------------------------
Confidence 7766666555444322211 11111100 11000
Q ss_pred HHHHHHh-HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhC--------CC--C-----HHHHHHHHHHHHHhCCHHHH
Q 009278 240 EKEAKER-KEKALKEKEAGNAAYKKKEFEKAIEHYSSALELD--------DE--D-----ISYLTNRAAVYLEMGKYEEC 303 (538)
Q Consensus 240 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--------p~--~-----~~~~~~la~~~~~~~~~~~A 303 (538)
... ....+.+++.+.++...|+|.+|++.++++++++ .+ . ..+...++.++..+|+..+|
T Consensus 168 ----~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea 243 (652)
T KOG2376|consen 168 ----PEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEA 243 (652)
T ss_pred ----cCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 001 2367789999999999999999999999995442 11 1 24678899999999999999
Q ss_pred HHHHHHHHHccccchhhHHHHHHH------------------------------------------HHHhHHHHHHhhhc
Q 009278 304 IKDCDKAVERGRELRSDFKMIARA------------------------------------------LTRKGTALVKMAKC 341 (538)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------~~~~~~~~~~~~~~ 341 (538)
...|...++.+|.+.+.......- +.+.+...+..+.
T Consensus 244 ~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk- 322 (652)
T KOG2376|consen 244 SSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNK- 322 (652)
T ss_pred HHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-
Confidence 999999999888765332111110 0011111111111
Q ss_pred ccChhHHHHHHHHHHhcCCChh--------HHHhhhhHHHHHHHHHHHHHcCCCc-hHHHHHHHHHHHhcCChHHHHHHH
Q 009278 342 SKDYEPAIETFQKALTEHRNPD--------TLKKLNEAEKAKKELEQQEIFDPKI-ADEEREKGNEFFKQQKYPEAIQHY 412 (538)
Q Consensus 342 ~~~~~~A~~~~~~~~~~~~~~~--------~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~ 412 (538)
.+.+.+.....-...|... ..........+...+......+|.. ..+...++.+.+.+|++..|++.+
T Consensus 323 ---~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il 399 (652)
T KOG2376|consen 323 ---MDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEIL 399 (652)
T ss_pred ---HHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 1111111111111111100 1112224667788888888888877 677888999999999999999999
Q ss_pred HHHHhc-------CCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhc-------CCCchHHHHHHHHHHHHccCHHHHHH
Q 009278 413 TESLRR-------NPKDPRTYSNRAACYTKLGAMPEGLKDADKCIEL-------DPTFSKGYTRKGAIQFFLKEYDKALE 478 (538)
Q Consensus 413 ~~al~~-------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-------~p~~~~~~~~l~~~~~~~g~~~~A~~ 478 (538)
...+.. ....|.+-..+-..+...++.+.|...+.+++.. .+.....+...+..-.+.|+-++|..
T Consensus 400 ~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s 479 (652)
T KOG2376|consen 400 SLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASS 479 (652)
T ss_pred HHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHH
Confidence 843311 1123455555666677888877777777777654 22333455667777788899999999
Q ss_pred HHHHHhccCCCCHHHHHHHHHHHHHhh
Q 009278 479 TYQEGLKHDPQNQELLDGVRRCVQQIN 505 (538)
Q Consensus 479 ~~~~al~~~p~~~~~~~~l~~~~~~~~ 505 (538)
.+++.++.+|++.+++..+..++..+.
T Consensus 480 ~leel~k~n~~d~~~l~~lV~a~~~~d 506 (652)
T KOG2376|consen 480 LLEELVKFNPNDTDLLVQLVTAYARLD 506 (652)
T ss_pred HHHHHHHhCCchHHHHHHHHHHHHhcC
Confidence 999999999999999999999888765
No 72
>PLN02789 farnesyltranstransferase
Probab=99.82 E-value=1.2e-17 Score=148.94 Aligned_cols=195 Identities=11% Similarity=0.061 Sum_probs=107.8
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCH--HHHHHHHHHHHHccccchhhHHHHHHHHHHhHHHHHHhhhccc
Q 009278 266 FEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKY--EECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSK 343 (538)
Q Consensus 266 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~--~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (538)
+++++..+.+++..+|++..+|..++.++...|+. ++++.+++++++.+|++ ..+|..++.++...+.
T Consensus 88 l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkN-------y~AW~~R~w~l~~l~~--- 157 (320)
T PLN02789 88 LEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKN-------YHAWSHRQWVLRTLGG--- 157 (320)
T ss_pred HHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCccc-------HHHHHHHHHHHHHhhh---
Confidence 34444444444444444444444444444444432 34444444555544444 3333333333333333
Q ss_pred ChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhc---CC----hHHHHHHHHHHH
Q 009278 344 DYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQ---QK----YPEAIQHYTESL 416 (538)
Q Consensus 344 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~---~~----~~~A~~~~~~al 416 (538)
++++++++.++++ .+|.+..+|..++.++... |. .++++.+..++|
T Consensus 158 -~~eeL~~~~~~I~--------------------------~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI 210 (320)
T PLN02789 158 -WEDELEYCHQLLE--------------------------EDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAI 210 (320)
T ss_pred -HHHHHHHHHHHHH--------------------------HCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHH
Confidence 4444444444444 4444555555555444433 22 235666667777
Q ss_pred hcCCCCchhHhHHHHHHHH----hCCchhHHHHHHHHHhcCCCchHHHHHHHHHHHHcc------------------CHH
Q 009278 417 RRNPKDPRTYSNRAACYTK----LGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLK------------------EYD 474 (538)
Q Consensus 417 ~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g------------------~~~ 474 (538)
..+|++..+|+.++.++.. +++..+|+..+.+++...|+++.++-.++.+|.... ..+
T Consensus 211 ~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (320)
T PLN02789 211 LANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDST 290 (320)
T ss_pred HhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHH
Confidence 7777777777777777766 344566777777777777777777777777776532 235
Q ss_pred HHHHHHHHHhccCCCCHHHHHHH
Q 009278 475 KALETYQEGLKHDPQNQELLDGV 497 (538)
Q Consensus 475 ~A~~~~~~al~~~p~~~~~~~~l 497 (538)
+|...+...-+.+|--...|...
T Consensus 291 ~a~~~~~~l~~~d~ir~~yw~~~ 313 (320)
T PLN02789 291 LAQAVCSELEVADPMRRNYWAWR 313 (320)
T ss_pred HHHHHHHHHHhhCcHHHHHHHHH
Confidence 67777777666666555555443
No 73
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.82 E-value=3e-16 Score=133.37 Aligned_cols=379 Identities=13% Similarity=0.074 Sum_probs=256.2
Q ss_pred HHHhhcCCHHHHHHHHHHHhccCCcch-HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHHHHHhhccCHHH
Q 009278 10 NAAFSSGDYEAAVRHFTEAISLSPDNH-VLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIE 88 (538)
Q Consensus 10 ~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~ 88 (538)
..++...+|..|+..++-.+..+.... ..-..+|.|++.+|+|++|+..|.-+...+.-+.+.+..++-|++-+|.|.+
T Consensus 30 edfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~e 109 (557)
T KOG3785|consen 30 EDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIE 109 (557)
T ss_pred HHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHH
Confidence 346778999999999998887665433 6677799999999999999999999988777778899999999999999999
Q ss_pred HHHHHHhhhhcCCCcHHHHhhHHHHHHHHhhcccCCCCCCCCcccccccCCchhhcccCCCCCCCcccHHHHHHHHHhhh
Q 009278 89 AVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRNMMKDIQ 168 (538)
Q Consensus 89 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 168 (538)
|...-.++ |+++-....+-.+..+.+..+ .+..+.
T Consensus 110 A~~~~~ka----~k~pL~~RLlfhlahklndEk-------------------------------------~~~~fh---- 144 (557)
T KOG3785|consen 110 AKSIAEKA----PKTPLCIRLLFHLAHKLNDEK-------------------------------------RILTFH---- 144 (557)
T ss_pred HHHHHhhC----CCChHHHHHHHHHHHHhCcHH-------------------------------------HHHHHH----
Confidence 98877765 555544444433333332210 000000
Q ss_pred cCCCchhhhhchHHHHHHHHHHHhhhcCCCCCCCccccccccCCCCCCCccccccCCCCCCCCCCccccHHHHHHHHhHH
Q 009278 169 RNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKEAKERKE 248 (538)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (538)
....+
T Consensus 145 ---------------------------------------------------------------------------~~LqD 149 (557)
T KOG3785|consen 145 ---------------------------------------------------------------------------SSLQD 149 (557)
T ss_pred ---------------------------------------------------------------------------HHHhh
Confidence 01112
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHHHHH
Q 009278 249 KALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARAL 328 (538)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (538)
..+-...++.+++..-.|.+|++.|++++.-+|+.......+|.||.++.-|+-+.+.+.-.+...|+++-.....+..+
T Consensus 150 ~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~ 229 (557)
T KOG3785|consen 150 TLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNL 229 (557)
T ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 33445677888888999999999999999999999888999999999999999999999999999999876655555544
Q ss_pred HHhHHH--HHH-h----hhcccChhH-----------------HHHHHHHHHhcCCChh-----HHHhhhhHHHHHHHHH
Q 009278 329 TRKGTA--LVK-M----AKCSKDYEP-----------------AIETFQKALTEHRNPD-----TLKKLNEAEKAKKELE 379 (538)
Q Consensus 329 ~~~~~~--~~~-~----~~~~~~~~~-----------------A~~~~~~~~~~~~~~~-----~~~~~~~~~~a~~~~~ 379 (538)
+++-.. -.. . .+....+.. |++.+-..+..-|.+. .+...++.++|.....
T Consensus 230 fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~K 309 (557)
T KOG3785|consen 230 FRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCK 309 (557)
T ss_pred hhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHh
Confidence 443211 000 0 000001112 2222222222222222 2355677888877766
Q ss_pred HHHHcCCCchHHHHHHHHHHHhcCChHHHHHHHHHH---HhcC------CCCchhHhHHHHHHHHhCCchhHHHHHHHHH
Q 009278 380 QQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTES---LRRN------PKDPRTYSNRAACYTKLGAMPEGLKDADKCI 450 (538)
Q Consensus 380 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a---l~~~------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 450 (538)
. ++|..|.-+...|.+....|+-....+.++-+ +.+. .+.......++.+++-..++++.+.++...-
T Consensus 310 d---l~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~ 386 (557)
T KOG3785|consen 310 D---LDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIE 386 (557)
T ss_pred h---cCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 78888988888898888887744443333322 2221 1233445666777777777777777777766
Q ss_pred hcCCCchHHHHHHHHHHHHccCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHHhhhhccCC
Q 009278 451 ELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHD-PQNQELLDGVRRCVQQINKAGRGE 511 (538)
Q Consensus 451 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~a~ 511 (538)
...-++....++++.++...|++.+|.+.|-++-... .+.......|++|+...++..-|.
T Consensus 387 sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW 448 (557)
T KOG3785|consen 387 SYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAW 448 (557)
T ss_pred HHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHH
Confidence 6666777777778888888888888887777665554 233444556777777776665554
No 74
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.82 E-value=2.6e-15 Score=154.39 Aligned_cols=379 Identities=14% Similarity=0.070 Sum_probs=267.1
Q ss_pred HHhhcCCHHHHHHHHHHHhccCCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhccCC-CchHHHHHHHHHHhhccCHHHH
Q 009278 11 AAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKP-DWSKGYSRLGAAHLGLQDYIEA 89 (538)
Q Consensus 11 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A 89 (538)
.+...|.+++|+..|+.... | +...|..+-.++...|+++.|...|+++.+... -+...|..+...|.+.|+.++|
T Consensus 415 ~~~~~g~~~eAl~lf~~M~~--p-d~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A 491 (1060)
T PLN03218 415 ACKKQRAVKEAFRFAKLIRN--P-TLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAM 491 (1060)
T ss_pred HHHHCCCHHHHHHHHHHcCC--C-CHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHH
Confidence 35567888888888877654 4 466777777888888888888888888876543 2456777888888888888888
Q ss_pred HHHHHhhhhcCC-CcHHHHhhHHHHHHHHhhcccCCCCCCCCcccccccCCchhhcccCCCCCCCcccHHHHHHHHHhhh
Q 009278 90 VNSYKKGLDIDP-NNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRNMMKDIQ 168 (538)
Q Consensus 90 ~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 168 (538)
...|+++.+... .+...+..+...+.+.|+.. .++..+.....
T Consensus 492 ~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~e------------------------------------eAl~lf~~M~~ 535 (1060)
T PLN03218 492 FEVFHEMVNAGVEANVHTFGALIDGCARAGQVA------------------------------------KAFGAYGIMRS 535 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHH------------------------------------HHHHHHHHHHH
Confidence 888888876543 25667777777777766542 22222222221
Q ss_pred --cCCCch------hhhhchHHHHHHHHHHHhhhcCCCCCCCccccccccCCCCCCCccccccCCCCCCCCCCccccHHH
Q 009278 169 --RNPNNL------NLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEE 240 (538)
Q Consensus 169 --~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (538)
..|+.. ..+...+....+...+..+....
T Consensus 536 ~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~------------------------------------------- 572 (1060)
T PLN03218 536 KNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAET------------------------------------------- 572 (1060)
T ss_pred cCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhc-------------------------------------------
Confidence 223311 11111222222222222221000
Q ss_pred HHHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--cccc
Q 009278 241 KEAKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELD-DEDISYLTNRAAVYLEMGKYEECIKDCDKAVER--GREL 317 (538)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~ 317 (538)
.....+...+..+...|.+.|++++|.++|+++.+.+ +.+...|..+...|.+.|++++|+.+|.++... .|+
T Consensus 573 ---~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD- 648 (1060)
T PLN03218 573 ---HPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD- 648 (1060)
T ss_pred ---CCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-
Confidence 0001245778888899999999999999999999886 457789999999999999999999999999875 344
Q ss_pred hhhHHHHHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCCh---------hHHHhhhhHHHHHHHHHHHHHcC-CC
Q 009278 318 RSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNP---------DTLKKLNEAEKAKKELEQQEIFD-PK 387 (538)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---------~~~~~~~~~~~a~~~~~~~~~~~-~~ 387 (538)
...|..+...+...++ +++|...++.+.+....+ ..+...|++++|...|+.+.... ..
T Consensus 649 -------~~TynsLI~a~~k~G~----~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~P 717 (1060)
T PLN03218 649 -------EVFFSALVDVAGHAGD----LDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRP 717 (1060)
T ss_pred -------HHHHHHHHHHHHhCCC----HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 3456666677777777 999999999999865432 24567799999999999987632 23
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHHHHHhcC-CCCchhHhHHHHHHHHhCCchhHHHHHHHHHhcC--CCchHHHHHHH
Q 009278 388 IADEEREKGNEFFKQQKYPEAIQHYTESLRRN-PKDPRTYSNRAACYTKLGAMPEGLKDADKCIELD--PTFSKGYTRKG 464 (538)
Q Consensus 388 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~ 464 (538)
+...|..+...|.+.|++++|+++|++..... ..+...|..+...+.+.|++++|..++.++++.. |+ ...+..+-
T Consensus 718 dvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd-~~tynsLI 796 (1060)
T PLN03218 718 TVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPN-LVMCRCIT 796 (1060)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHH
Confidence 56779999999999999999999999887542 2256678888899999999999999999998863 44 33343332
Q ss_pred HHHHHccCHHHHHHHHHHHhccCCC
Q 009278 465 AIQFFLKEYDKALETYQEGLKHDPQ 489 (538)
Q Consensus 465 ~~~~~~g~~~~A~~~~~~al~~~p~ 489 (538)
.++. +++++|....+..+..++.
T Consensus 797 glc~--~~y~ka~~l~~~v~~f~~g 819 (1060)
T PLN03218 797 GLCL--RRFEKACALGEPVVSFDSG 819 (1060)
T ss_pred HHHH--HHHHHHhhhhhhhhhhhcc
Confidence 2222 4577777777666665543
No 75
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.80 E-value=9.2e-17 Score=153.64 Aligned_cols=181 Identities=13% Similarity=0.065 Sum_probs=98.0
Q ss_pred hHHHHHHHHHHhcCCChh-------HHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 009278 346 EPAIETFQKALTEHRNPD-------TLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRR 418 (538)
Q Consensus 346 ~~A~~~~~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 418 (538)
..|+.+++++++...+.. ++...|.+.-+..+|-+.....|.....|.++|.++....+++.|...|.++..+
T Consensus 800 ~~Ai~c~KkaV~L~ann~~~WnaLGVlsg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSL 879 (1238)
T KOG1127|consen 800 CTAIRCCKKAVSLCANNEGLWNALGVLSGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSL 879 (1238)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHhhccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhhc
Confidence 355555555555544432 2222345555555555555556666666666666666666666666666666666
Q ss_pred CCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCC---c--hHHHHHHHHHHHHccCHHHHHHH----------HHHH
Q 009278 419 NPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPT---F--SKGYTRKGAIQFFLKEYDKALET----------YQEG 483 (538)
Q Consensus 419 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~---~--~~~~~~l~~~~~~~g~~~~A~~~----------~~~a 483 (538)
+|.+...|...+.+....|+.-++...|....++... . ...|..--......|++++-+.. +++.
T Consensus 880 dP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~y 959 (1238)
T KOG1127|consen 880 DPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYY 959 (1238)
T ss_pred CchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHH
Confidence 6666656655555555555555555555543222111 1 11222223333344444443333 2333
Q ss_pred hccCCCCHHHHHHHHHHHHHhhhhccCCCChHHHHHHHHhccC
Q 009278 484 LKHDPQNQELLDGVRRCVQQINKAGRGELSPEELKERQAKGMQ 526 (538)
Q Consensus 484 l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 526 (538)
+.-.|+...++...+.++..++.+..|.....++...++....
T Consensus 960 f~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d 1002 (1238)
T KOG1127|consen 960 FLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLD 1002 (1238)
T ss_pred HhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456777777777777777888777777665555555555443
No 76
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.80 E-value=2.8e-14 Score=126.18 Aligned_cols=422 Identities=12% Similarity=0.085 Sum_probs=298.8
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHHHhccCCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHHHHHhh
Q 009278 3 DEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLG 82 (538)
Q Consensus 3 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 82 (538)
..|+.-|.--..++++..|...|++||..+..+...|...+.+-++.+....|...+++++.+-|.--..|+.....-..
T Consensus 74 ~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~ 153 (677)
T KOG1915|consen 74 QVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEM 153 (677)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 35677788888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHHHHhhhhcCCCcHHHHhhHHHHHHHHhhcccCCCCCCCCcccccccCCchhhcccCCCCCCCcccHHHHHH
Q 009278 83 LQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRN 162 (538)
Q Consensus 83 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (538)
+|+...|.+.|++.++..|+. .+|........+....+ .+-..
T Consensus 154 LgNi~gaRqiferW~~w~P~e-qaW~sfI~fElRykeie------------------------------------raR~I 196 (677)
T KOG1915|consen 154 LGNIAGARQIFERWMEWEPDE-QAWLSFIKFELRYKEIE------------------------------------RARSI 196 (677)
T ss_pred hcccHHHHHHHHHHHcCCCcH-HHHHHHHHHHHHhhHHH------------------------------------HHHHH
Confidence 999999999999999999974 45666666555554432 12222
Q ss_pred HHHhhhcCCCchhhhhchHHHHHHHHHHHhhhcCCCCCCCccccccccCCCCCCCccccccCCCCCCCCCCccccHHHHH
Q 009278 163 MMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKE 242 (538)
Q Consensus 163 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (538)
+.+.+-.+|+ ...++...+.....|...... ..++ .....
T Consensus 197 YerfV~~HP~-v~~wikyarFE~k~g~~~~aR-------~Vye--------------------------------rAie~ 236 (677)
T KOG1915|consen 197 YERFVLVHPK-VSNWIKYARFEEKHGNVALAR-------SVYE--------------------------------RAIEF 236 (677)
T ss_pred HHHHheeccc-HHHHHHHHHHHHhcCcHHHHH-------HHHH--------------------------------HHHHH
Confidence 2233333332 233333333322222211111 0000 00111
Q ss_pred HHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCH--HHHHHHHHHHHHhCCH---HHHH-----HHHHHHHH
Q 009278 243 AKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDI--SYLTNRAAVYLEMGKY---EECI-----KDCDKAVE 312 (538)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~la~~~~~~~~~---~~A~-----~~~~~~~~ 312 (538)
+..+..........|..-..++.++.|.-+|+-+++.-|.+- ..+-.+...--+-|+. +.++ -.|++.+.
T Consensus 237 ~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~ 316 (677)
T KOG1915|consen 237 LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVS 316 (677)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHH
Confidence 112223444455556666678888888888988888888773 3333333333344543 2332 24667777
Q ss_pred ccccchhhHHHHHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCChh----------------HH--HhhhhHHHH
Q 009278 313 RGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPD----------------TL--KKLNEAEKA 374 (538)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~----------------~~--~~~~~~~~a 374 (538)
.+|-+-+.| +..-.+....|+ .+.-.+.|++++...|... ++ ....+.+.+
T Consensus 317 ~np~nYDsW-------fdylrL~e~~g~----~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ert 385 (677)
T KOG1915|consen 317 KNPYNYDSW-------FDYLRLEESVGD----KDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERT 385 (677)
T ss_pred hCCCCchHH-------HHHHHHHHhcCC----HHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 788774444 333333333444 8999999999999877643 11 234678889
Q ss_pred HHHHHHHHHcCCC----chHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHhHHHHHHHHhCCchhHHHHHHHHH
Q 009278 375 KKELEQQEIFDPK----IADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCI 450 (538)
Q Consensus 375 ~~~~~~~~~~~~~----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 450 (538)
.+.|+.++.+-|. .+.+|...|....++.+...|.+.+-.++...|.+ .++-....+-.++++++....+|++-+
T Consensus 386 r~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~-KlFk~YIelElqL~efDRcRkLYEkfl 464 (677)
T KOG1915|consen 386 RQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKD-KLFKGYIELELQLREFDRCRKLYEKFL 464 (677)
T ss_pred HHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCch-hHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 9999999998885 46788899999999999999999999999999964 344555566778899999999999999
Q ss_pred hcCCCchHHHHHHHHHHHHccCHHHHHHHHHHHhccCCCC--HHHHHHHHHHHHHhhhhccCCCC
Q 009278 451 ELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQN--QELLDGVRRCVQQINKAGRGELS 513 (538)
Q Consensus 451 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~~~~~~a~~~ 513 (538)
+..|.+..+|...|.+-..+|+.+.|...|+-|+....-+ .-+|......-...|.+++|...
T Consensus 465 e~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~L 529 (677)
T KOG1915|consen 465 EFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARAL 529 (677)
T ss_pred hcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHH
Confidence 9999999999999999999999999999999998765433 23344444445555555555544
No 77
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=2.1e-18 Score=149.19 Aligned_cols=262 Identities=23% Similarity=0.338 Sum_probs=221.0
Q ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHHH
Q 009278 247 KEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIAR 326 (538)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 326 (538)
...+.-....|..++...+|..|+..|..+++.+|++...|...+.+++..|++++|.-..++.+.+.|.......
T Consensus 46 ~~~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~---- 121 (486)
T KOG0550|consen 46 AQQAEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQL---- 121 (486)
T ss_pred HHHHHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCcccccc----
Confidence 3456667778999999999999999999999999999999999999999999999999999999999998855443
Q ss_pred HHHHhHHHHHHhhhcccChhHHHHHHH---------------HHHhcCC-----------ChhHHHhhhhHHHHHHHHHH
Q 009278 327 ALTRKGTALVKMAKCSKDYEPAIETFQ---------------KALTEHR-----------NPDTLKKLNEAEKAKKELEQ 380 (538)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~A~~~~~---------------~~~~~~~-----------~~~~~~~~~~~~~a~~~~~~ 380 (538)
+.+.++..++. ..+|...++ +.+.... ...++.-++++.+|.+.-..
T Consensus 122 ---r~~~c~~a~~~----~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ 194 (486)
T KOG0550|consen 122 ---REGQCHLALSD----LIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAID 194 (486)
T ss_pred ---chhhhhhhhHH----HHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHH
Confidence 34444444333 444443332 2222111 12356677999999999999
Q ss_pred HHHcCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCc------------hhHhHHHHHHHHhCCchhHHHHHHH
Q 009278 381 QEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDP------------RTYSNRAACYTKLGAMPEGLKDADK 448 (538)
Q Consensus 381 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~------------~~~~~la~~~~~~~~~~~A~~~~~~ 448 (538)
.+++++.+.++++..|.+++..++.+.|+..|++++.++|++. ..+-..|.-.++.|++..|.++|..
T Consensus 195 ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yte 274 (486)
T KOG0550|consen 195 ILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTE 274 (486)
T ss_pred HHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHH
Confidence 9999999999999999999999999999999999999999864 4567788889999999999999999
Q ss_pred HHhcCCCc----hHHHHHHHHHHHHccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhccCCCChHHHHH
Q 009278 449 CIELDPTF----SKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDGVRRCVQQINKAGRGELSPEELKE 519 (538)
Q Consensus 449 al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 519 (538)
+|.++|++ +..|.+++.+..++|+..+|+...+.++.++|.-..++...+.|+..++++++|.+.++++.+
T Consensus 275 al~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q 349 (486)
T KOG0550|consen 275 ALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQ 349 (486)
T ss_pred hhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999986 446899999999999999999999999999999999999999999999999999866554443
No 78
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.79 E-value=3.8e-17 Score=143.19 Aligned_cols=185 Identities=20% Similarity=0.213 Sum_probs=157.5
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHHHhccCCcch---HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchH---HHHH
Q 009278 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNH---VLYSNRSAAHASLHNYADALADAKKTVELKPDWSK---GYSR 75 (538)
Q Consensus 2 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~ 75 (538)
++.++.+|..++..|+|++|+..|++++..+|.++ .+++.+|.++...|++++|+..|+++++.+|+++. +++.
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 112 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYL 112 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHH
Confidence 56889999999999999999999999999999876 68899999999999999999999999999998876 7899
Q ss_pred HHHHHhhc--------cCHHHHHHHHHhhhhcCCCcHHHHhhHHHHHHHHhhcccCCCCCCCCcccccccCCchhhcccC
Q 009278 76 LGAAHLGL--------QDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTA 147 (538)
Q Consensus 76 la~~~~~~--------~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (538)
+|.++... |++++|+..|++++..+|++...+..+..+....
T Consensus 113 ~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~------------------------------ 162 (235)
T TIGR03302 113 RGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLR------------------------------ 162 (235)
T ss_pred HHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHH------------------------------
Confidence 99999876 8899999999999999999876654433221111
Q ss_pred CCCCCCcccHHHHHHHHHhhhcCCCchhhhhchHHHHHHHHHHHhhhcCCCCCCCccccccccCCCCCCCccccccCCCC
Q 009278 148 DPTTRSYLDQDDFRNMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPES 227 (538)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (538)
T Consensus 163 -------------------------------------------------------------------------------- 162 (235)
T TIGR03302 163 -------------------------------------------------------------------------------- 162 (235)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCccccHHHHHHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhCCHHHHH
Q 009278 228 EPEPEPMELTEEEKEAKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDED---ISYLTNRAAVYLEMGKYEECI 304 (538)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~ 304 (538)
.........+|..++..|++.+|+..|+++++..|+. +.+++.+|.++..+|++++|+
T Consensus 163 -------------------~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~ 223 (235)
T TIGR03302 163 -------------------NRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQ 223 (235)
T ss_pred -------------------HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHH
Confidence 0111223567889999999999999999999997764 589999999999999999999
Q ss_pred HHHHHHHHccc
Q 009278 305 KDCDKAVERGR 315 (538)
Q Consensus 305 ~~~~~~~~~~~ 315 (538)
.+++.+....|
T Consensus 224 ~~~~~l~~~~~ 234 (235)
T TIGR03302 224 DAAAVLGANYP 234 (235)
T ss_pred HHHHHHHhhCC
Confidence 99988877665
No 79
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.79 E-value=6.2e-17 Score=150.68 Aligned_cols=260 Identities=23% Similarity=0.224 Sum_probs=199.2
Q ss_pred CCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhcc--------CCCchHHHHHHHHHHhhccCHHHHHHHHHhhhhcCCCc
Q 009278 32 SPDNHVLYSNRSAAHASLHNYADALADAKKTVEL--------KPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNN 103 (538)
Q Consensus 32 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 103 (538)
+|.-..+...+|..|...|+|+.|+..|+.++.. .|.-......+|.+|..++++.+|+..|++|+.+.-..
T Consensus 195 ~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~ 274 (508)
T KOG1840|consen 195 DPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEV 274 (508)
T ss_pred CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence 4555577778999999999999999999999988 66666666679999999999999999999998752110
Q ss_pred HHHHhhHHHHHHHHhhcccCCCCCCCCcccccccCCchhhcccCCCCCCCcccHHHHHHHHHhhhcCCCchhhhhchHHH
Q 009278 104 EALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRNMMKDIQRNPNNLNLYLKDQRV 183 (538)
Q Consensus 104 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 183 (538)
T Consensus 275 -------------------------------------------------------------------------------- 274 (508)
T KOG1840|consen 275 -------------------------------------------------------------------------------- 274 (508)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhhhcCCCCCCCccccccccCCCCCCCccccccCCCCCCCCCCccccHHHHHHHHhHHHHHHHHHHHHHHHhc
Q 009278 184 MQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKEAKERKEKALKEKEAGNAAYKK 263 (538)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (538)
.....|..+.++.++|..|...
T Consensus 275 ----------------------------------------------------------~G~~h~~va~~l~nLa~ly~~~ 296 (508)
T KOG1840|consen 275 ----------------------------------------------------------FGEDHPAVAATLNNLAVLYYKQ 296 (508)
T ss_pred ----------------------------------------------------------cCCCCHHHHHHHHHHHHHHhcc
Confidence 0011245777889999999999
Q ss_pred ccHHHHHHHHHHHHhhCC--------CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhh-HHHHHHHHHHhHHH
Q 009278 264 KEFEKAIEHYSSALELDD--------EDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSD-FKMIARALTRKGTA 334 (538)
Q Consensus 264 ~~~~~A~~~~~~al~~~p--------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 334 (538)
|++++|..++++++++.. .-...+..++.++..++++++|..++++++++.-+.+.. ...++.++.++|.+
T Consensus 297 GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l 376 (508)
T KOG1840|consen 297 GKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAEL 376 (508)
T ss_pred CChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHH
Confidence 999999999999998732 224567888999999999999999999999876543332 23668999999999
Q ss_pred HHHhhhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcCChHHHHHHHHH
Q 009278 335 LVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTE 414 (538)
Q Consensus 335 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 414 (538)
+..+|+ +++|.+.|++++....... -..++.....+..+|..+.+.+++.+|...|.+
T Consensus 377 ~~~~gk----~~ea~~~~k~ai~~~~~~~------------------~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~ 434 (508)
T KOG1840|consen 377 YLKMGK----YKEAEELYKKAIQILRELL------------------GKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEE 434 (508)
T ss_pred HHHhcc----hhHHHHHHHHHHHHHHhcc------------------cCcChhhhHHHHHHHHHHHHhcccchHHHHHHH
Confidence 999999 9999999999998432110 002334455677788888888888888888887
Q ss_pred HHhcC----C---CCchhHhHHHHHHHHhCCchhHHHHHHHHHh
Q 009278 415 SLRRN----P---KDPRTYSNRAACYTKLGAMPEGLKDADKCIE 451 (538)
Q Consensus 415 al~~~----~---~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 451 (538)
++.+. | +....+.+||.+|..+|+++.|+++.++++.
T Consensus 435 ~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 435 AKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 76542 2 2234667777777777777777777777764
No 80
>PLN03077 Protein ECB2; Provisional
Probab=99.79 E-value=3.4e-15 Score=155.77 Aligned_cols=181 Identities=13% Similarity=0.059 Sum_probs=147.8
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcC--CChh--
Q 009278 288 TNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEH--RNPD-- 363 (538)
Q Consensus 288 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~-- 363 (538)
..+...|.+.|+.++|...|+.. .| + ..+|..+...|...|+ .++|+..|++..... |+..
T Consensus 528 naLi~~y~k~G~~~~A~~~f~~~---~~-d-------~~s~n~lI~~~~~~G~----~~~A~~lf~~M~~~g~~Pd~~T~ 592 (857)
T PLN03077 528 NALLDLYVRCGRMNYAWNQFNSH---EK-D-------VVSWNILLTGYVAHGK----GSMAVELFNRMVESGVNPDEVTF 592 (857)
T ss_pred hHHHHHHHHcCCHHHHHHHHHhc---CC-C-------hhhHHHHHHHHHHcCC----HHHHHHHHHHHHHcCCCCCcccH
Confidence 34557788889999998888876 33 3 3556666677777777 999999999998754 4432
Q ss_pred -----HHHhhhhHHHHHHHHHHHHHcCC--CchHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHhHHHHHHHHh
Q 009278 364 -----TLKKLNEAEKAKKELEQQEIFDP--KIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKL 436 (538)
Q Consensus 364 -----~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~ 436 (538)
.+...|.+++|...|+.+....+ -+...|..+...+.+.|++++|.+.+++. ...| ++.+|..+-..+...
T Consensus 593 ~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p-d~~~~~aLl~ac~~~ 670 (857)
T PLN03077 593 ISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-PITP-DPAVWGALLNACRIH 670 (857)
T ss_pred HHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHc
Confidence 34566899999999999885432 23468899999999999999999999875 3455 467888888888889
Q ss_pred CCchhHHHHHHHHHhcCCCchHHHHHHHHHHHHccCHHHHHHHHHHHhc
Q 009278 437 GAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLK 485 (538)
Q Consensus 437 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 485 (538)
|+.+.+....++++++.|+++..|..++.+|...|++++|....+...+
T Consensus 671 ~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~ 719 (857)
T PLN03077 671 RHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRE 719 (857)
T ss_pred CChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999987754
No 81
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.79 E-value=3.6e-17 Score=152.23 Aligned_cols=258 Identities=20% Similarity=0.195 Sum_probs=203.6
Q ss_pred HhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcccc
Q 009278 245 ERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALEL--------DDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRE 316 (538)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 316 (538)
..|....+...+|..|..+|+|++|+..++.+++. .|.-......+|.+|..++++.+|+..|++++.+...
T Consensus 194 ~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~ 273 (508)
T KOG1840|consen 194 EDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREE 273 (508)
T ss_pred CCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 34667778888999999999999999999999998 4444455666999999999999999999999986432
Q ss_pred c-hhhHHHHHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHH
Q 009278 317 L-RSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREK 395 (538)
Q Consensus 317 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 395 (538)
. .......+.++.+++..|...|+ +++|..++++++.+... ......|.-...+..+
T Consensus 274 ~~G~~h~~va~~l~nLa~ly~~~GK----f~EA~~~~e~Al~I~~~------------------~~~~~~~~v~~~l~~~ 331 (508)
T KOG1840|consen 274 VFGEDHPAVAATLNNLAVLYYKQGK----FAEAEEYCERALEIYEK------------------LLGASHPEVAAQLSEL 331 (508)
T ss_pred hcCCCCHHHHHHHHHHHHHHhccCC----hHHHHHHHHHHHHHHHH------------------hhccChHHHHHHHHHH
Confidence 1 12223348899999999999999 99999999999984221 0111345556677888
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCC--------CCchhHhHHHHHHHHhCCchhHHHHHHHHHhcC--------CCchHH
Q 009278 396 GNEFFKQQKYPEAIQHYTESLRRNP--------KDPRTYSNRAACYTKLGAMPEGLKDADKCIELD--------PTFSKG 459 (538)
Q Consensus 396 a~~~~~~~~~~~A~~~~~~al~~~~--------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~ 459 (538)
+.++..++++++|+.++++++++.- .-+..+.++|.+|..+|++++|.+++++++.+. +.....
T Consensus 332 ~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~ 411 (508)
T KOG1840|consen 332 AAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKP 411 (508)
T ss_pred HHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHH
Confidence 9999999999999999999887632 225678899999999999999999999999763 334567
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHhcc-------CCCCHHHHHHHHHHHHHhhhhccCCCChHHHHHHHHhc
Q 009278 460 YTRKGAIQFFLKEYDKALETYQEGLKH-------DPQNQELLDGVRRCVQQINKAGRGELSPEELKERQAKG 524 (538)
Q Consensus 460 ~~~l~~~~~~~g~~~~A~~~~~~al~~-------~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 524 (538)
+.++|..+.+.+++.+|...|..+..+ .|+-...+.+|+.+|..+|+++.|....+++...-+..
T Consensus 412 l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~~~ 483 (508)
T KOG1840|consen 412 LNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNAREQR 483 (508)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHc
Confidence 888999999999999998888888765 35557778899999999999999986655444444433
No 82
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.78 E-value=3.7e-15 Score=125.30 Aligned_cols=236 Identities=16% Similarity=0.145 Sum_probs=182.2
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHhccCCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCc-----hHHHHHHHHHH
Q 009278 6 KAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDW-----SKGYSRLGAAH 80 (538)
Q Consensus 6 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~ 80 (538)
+-.|..++-+.+.++|++.|-.+++.+|...++...+|..+.+.|..+.|+..-+..+. .|+. ..+...+|.-|
T Consensus 39 Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~qr~lAl~qL~~Dy 117 (389)
T COG2956 39 YVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFEQRLLALQQLGRDY 117 (389)
T ss_pred HHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchHHHHHHHHHHHHHH
Confidence 34788889999999999999999999999999999999999999999999998777654 5543 35788999999
Q ss_pred hhccCHHHHHHHHHhhhhcCCCcHHHHhhHHHHHHHHhhcccCCCCCCCCcccccccCCchhhcccCCCCCCCcccHHHH
Q 009278 81 LGLQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDF 160 (538)
Q Consensus 81 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (538)
+..|-++.|...|....+...--..+...|..+|....++ .+++
T Consensus 118 m~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW------------------------------------~KAI 161 (389)
T COG2956 118 MAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREW------------------------------------EKAI 161 (389)
T ss_pred HHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHH------------------------------------HHHH
Confidence 9999999999999998876555566777777777776554 3444
Q ss_pred HHHHHhhhcCCCchhhhhchHHHHHHHHHHHhhhcCCCCCCCccccccccCCCCCCCccccccCCCCCCCCCCccccHHH
Q 009278 161 RNMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEE 240 (538)
Q Consensus 161 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (538)
+.+.+.....+....
T Consensus 162 d~A~~L~k~~~q~~~----------------------------------------------------------------- 176 (389)
T COG2956 162 DVAERLVKLGGQTYR----------------------------------------------------------------- 176 (389)
T ss_pred HHHHHHHHcCCccch-----------------------------------------------------------------
Confidence 444444433333211
Q ss_pred HHHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhh
Q 009278 241 KEAKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSD 320 (538)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 320 (538)
..-+..+..++..+....+.+.|...+.++++.+|++..+-..+|.++...|+|..|++.++.+++.+|+..
T Consensus 177 ------~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl-- 248 (389)
T COG2956 177 ------VEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYL-- 248 (389)
T ss_pred ------hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHH--
Confidence 134556677777777788888888888888888888888888888888888888888888888888777642
Q ss_pred HHHHHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcC
Q 009278 321 FKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEH 359 (538)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 359 (538)
+.+.-.+..+|..+|+ .++.+..+.++.+..
T Consensus 249 ----~evl~~L~~~Y~~lg~----~~~~~~fL~~~~~~~ 279 (389)
T COG2956 249 ----SEVLEMLYECYAQLGK----PAEGLNFLRRAMETN 279 (389)
T ss_pred ----HHHHHHHHHHHHHhCC----HHHHHHHHHHHHHcc
Confidence 5556666667777777 777777777777743
No 83
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.77 E-value=3.3e-15 Score=140.25 Aligned_cols=316 Identities=12% Similarity=-0.069 Sum_probs=219.3
Q ss_pred CCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCc---hHHHHHHHHHHhhccCHHHHHHHHHhhhhcCCCcHHHHh
Q 009278 32 SPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDW---SKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNEALKS 108 (538)
Q Consensus 32 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 108 (538)
+|+.+.++..+|.++...|+++.+...+.++....|.+ .......|.++...|++++|...++++++.+|++..++.
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~ 81 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALK 81 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHH
Confidence 78899999999999999999999888888888777754 456777888899999999999999999999999886655
Q ss_pred hHHHHHHHHhhcccCCCCCCCCcccccccCCchhhcccCCCCCCCcccHHHHHHHHHhhhcCCCchhhhhchHHHHHHHH
Q 009278 109 GLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRNMMKDIQRNPNNLNLYLKDQRVMQALG 188 (538)
Q Consensus 109 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 188 (538)
. +..+...+.... ......+.+..
T Consensus 82 ~-~~~~~~~~~~~~------------------------------------~~~~~~~~l~~------------------- 105 (355)
T cd05804 82 L-HLGAFGLGDFSG------------------------------------MRDHVARVLPL------------------- 105 (355)
T ss_pred H-hHHHHHhccccc------------------------------------CchhHHHHHhc-------------------
Confidence 3 333333322100 00000010000
Q ss_pred HHHhhhcCCCCCCCccccccccCCCCCCCccccccCCCCCCCCCCccccHHHHHHHHhHHHHHHHHHHHHHHHhcccHHH
Q 009278 189 VLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKEAKERKEKALKEKEAGNAAYKKKEFEK 268 (538)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (538)
.....|........+|.++...|++++
T Consensus 106 -----------------------------------------------------~~~~~~~~~~~~~~~a~~~~~~G~~~~ 132 (355)
T cd05804 106 -----------------------------------------------------WAPENPDYWYLLGMLAFGLEEAGQYDR 132 (355)
T ss_pred -----------------------------------------------------cCcCCCCcHHHHHHHHHHHHHcCCHHH
Confidence 001112345566778999999999999
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHHHHHHHhHHHHHHhhhcccChhHH
Q 009278 269 AIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPA 348 (538)
Q Consensus 269 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 348 (538)
|+..++++++.+|+++.++..+|.++...|++++|+..+++++...|..+... ...+..++.++...|+ +++|
T Consensus 133 A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~---~~~~~~la~~~~~~G~----~~~A 205 (355)
T cd05804 133 AEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLR---GHNWWHLALFYLERGD----YEAA 205 (355)
T ss_pred HHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchh---HHHHHHHHHHHHHCCC----HHHH
Confidence 99999999999999999999999999999999999999999999887643322 4567778888888888 9999
Q ss_pred HHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHH---HHHHHHHhcCChHHHHHH---HHHHHhcCCC-
Q 009278 349 IETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEER---EKGNEFFKQQKYPEAIQH---YTESLRRNPK- 421 (538)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~la~~~~~~~~~~~A~~~---~~~al~~~~~- 421 (538)
+..|++++...+.. ....... .+...+...|....+..+ ........|.
T Consensus 206 ~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~ 261 (355)
T cd05804 206 LAIYDTHIAPSAES------------------------DPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDH 261 (355)
T ss_pred HHHHHHHhccccCC------------------------ChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcc
Confidence 99999987633211 1111000 112222333332222222 1111111121
Q ss_pred -CchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCC---------chHHHHHHHHHHHHccCHHHHHHHHHHHhccC
Q 009278 422 -DPRTYSNRAACYTKLGAMPEGLKDADKCIELDPT---------FSKGYTRKGAIQFFLKEYDKALETYQEGLKHD 487 (538)
Q Consensus 422 -~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 487 (538)
........+.++...|+.++|...++........ ........+.+++..|++++|...+..++.+.
T Consensus 262 ~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 262 GLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred cchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 1223346778888899999999999887654322 24456778899999999999999999998764
No 84
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.77 E-value=5.8e-14 Score=124.19 Aligned_cols=367 Identities=13% Similarity=0.082 Sum_probs=234.3
Q ss_pred HHHHHhccCCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHHHHHhhccCHHHHHHHHHhhhhcCCCc
Q 009278 24 HFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNN 103 (538)
Q Consensus 24 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 103 (538)
.|+..+..+.-+...|...|.--..++++..|...|++|+..+..+...|+..+.+-++.....-|...+.+|+.+-|.-
T Consensus 61 efEd~irrnR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRV 140 (677)
T KOG1915|consen 61 EFEDQIRRNRLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRV 140 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchH
Confidence 45555555666678899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhHHHHHHHHhhcccCCCCCCCCcccccccCCchhhcccCCCCCCCcccHHHHHHHHHhhhcCCCchhhhhchHHH
Q 009278 104 EALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRNMMKDIQRNPNNLNLYLKDQRV 183 (538)
Q Consensus 104 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 183 (538)
...|+....+...+|+. .++-..+.+-+...|+.
T Consensus 141 dqlWyKY~ymEE~LgNi------------------------------------~gaRqiferW~~w~P~e---------- 174 (677)
T KOG1915|consen 141 DQLWYKYIYMEEMLGNI------------------------------------AGARQIFERWMEWEPDE---------- 174 (677)
T ss_pred HHHHHHHHHHHHHhccc------------------------------------HHHHHHHHHHHcCCCcH----------
Confidence 99998888887777665 33444444555555542
Q ss_pred HHHHHHHHhhhcCCCCCCCccccccccCCCCCCCccccccCCCCCCCCCCccccHHHHHHHHhHHHHHHHHHHHHHHHhc
Q 009278 184 MQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKEAKERKEKALKEKEAGNAAYKK 263 (538)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (538)
.+|......-.+.
T Consensus 175 -------------------------------------------------------------------qaW~sfI~fElRy 187 (677)
T KOG1915|consen 175 -------------------------------------------------------------------QAWLSFIKFELRY 187 (677)
T ss_pred -------------------------------------------------------------------HHHHHHHHHHHHh
Confidence 2233333344444
Q ss_pred ccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHHHHHHHhHHHHHHhhhccc
Q 009278 264 KEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSK 343 (538)
Q Consensus 264 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (538)
++.+.|..+|++.+-..|+ ...|...+..-.+.|+..-|...|.++++...++... ...+...+..-.....
T Consensus 188 keieraR~IYerfV~~HP~-v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~----e~lfvaFA~fEe~qkE--- 259 (677)
T KOG1915|consen 188 KEIERARSIYERFVLVHPK-VSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEA----EILFVAFAEFEERQKE--- 259 (677)
T ss_pred hHHHHHHHHHHHHheeccc-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHH----HHHHHHHHHHHHHHHH---
Confidence 5555555555555544442 3445555555555555555555555555543332111 1122222222222233
Q ss_pred ChhHHHHHHHHHHhcCCChh----------------------------------------------------HHHhhhhH
Q 009278 344 DYEPAIETFQKALTEHRNPD----------------------------------------------------TLKKLNEA 371 (538)
Q Consensus 344 ~~~~A~~~~~~~~~~~~~~~----------------------------------------------------~~~~~~~~ 371 (538)
++.|...|+-++..-|.+. +....|+.
T Consensus 260 -~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~ 338 (677)
T KOG1915|consen 260 -YERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDK 338 (677)
T ss_pred -HHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCH
Confidence 5555555555555444431 11223444
Q ss_pred HHHHHHHHHHHHcCCCchH---------HHHHHHH-HHHhcCChHHHHHHHHHHHhcCCCC----chhHhHHHHHHHHhC
Q 009278 372 EKAKKELEQQEIFDPKIAD---------EEREKGN-EFFKQQKYPEAIQHYTESLRRNPKD----PRTYSNRAACYTKLG 437 (538)
Q Consensus 372 ~~a~~~~~~~~~~~~~~~~---------~~~~la~-~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~~ 437 (538)
+.-.+.|++++...|-... .|.+.+. .-....+.+.+...|+.++++-|.. +.+|...|....++.
T Consensus 339 ~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~ 418 (677)
T KOG1915|consen 339 DRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQL 418 (677)
T ss_pred HHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHc
Confidence 4455555555554443211 1111111 0123445555555555555555542 345666666666777
Q ss_pred CchhHHHHHHHHHhcCCCchHHHHHHHHHHHHccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhccCCCC
Q 009278 438 AMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDGVRRCVQQINKAGRGELS 513 (538)
Q Consensus 438 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~ 513 (538)
+...|.+.+-.++...|.+ ...-..-.+-.++++++.....|++-++..|.+..+|...+.+-..+|+.+.|...
T Consensus 419 ~l~~ARkiLG~AIG~cPK~-KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRai 493 (677)
T KOG1915|consen 419 NLTGARKILGNAIGKCPKD-KLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAI 493 (677)
T ss_pred ccHHHHHHHHHHhccCCch-hHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHH
Confidence 7777777777777777763 44445556667889999999999999999999999999999999999999988744
No 85
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.76 E-value=3.1e-14 Score=134.69 Aligned_cols=274 Identities=19% Similarity=0.175 Sum_probs=181.7
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHHHhccCCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHHHHHh
Q 009278 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHL 81 (538)
Q Consensus 2 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 81 (538)
+|.+.-+..++...|++++|++.+.+....-++...++-.+|.++.++|++++|...|...+..+|++...+..+..+..
T Consensus 4 SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g 83 (517)
T PF12569_consen 4 SELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALG 83 (517)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHh
Confidence 46677788999999999999999999888888888999999999999999999999999999999999999999888873
Q ss_pred hcc-----CHHHHHHHHHhhhhcCCCcHHHHhhHHHHHHHHhhcccCCCCCCCCcccccccCCchhhcccCCCCCCCccc
Q 009278 82 GLQ-----DYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLD 156 (538)
Q Consensus 82 ~~~-----~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (538)
... +.+.-...|+......|........--. +..
T Consensus 84 ~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~-----------------------------------------~~~ 122 (517)
T PF12569_consen 84 LQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLD-----------------------------------------FLE 122 (517)
T ss_pred hhcccccccHHHHHHHHHHHHHhCccccchhHhhcc-----------------------------------------cCC
Confidence 332 4666777888777777765433221100 000
Q ss_pred HHHHH----H-HHHhhhcC-CCc---hhhhhchHHHHHHHHHHHhhhcCCCCCCCccccccccCCCCCCCccccccCCCC
Q 009278 157 QDDFR----N-MMKDIQRN-PNN---LNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPES 227 (538)
Q Consensus 157 ~~~~~----~-~~~~l~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (538)
...|. . +...+... |.. +..+.....-...+..+............. +. ..
T Consensus 123 g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~-------~~---~~---------- 182 (517)
T PF12569_consen 123 GDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGS-------FS---NG---------- 182 (517)
T ss_pred HHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCC-------CC---Cc----------
Confidence 11111 1 11112111 111 111111111111121111111111000000 00 00
Q ss_pred CCCCCCccccHHHHHHHHhH-HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHH
Q 009278 228 EPEPEPMELTEEEKEAKERK-EKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKD 306 (538)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~ 306 (538)
.......| ...++++.++..|-..|++++|+.+++++|+..|..++.+...|.++-..|++.+|...
T Consensus 183 ------------~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~ 250 (517)
T PF12569_consen 183 ------------DDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEA 250 (517)
T ss_pred ------------cccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 00000011 24577899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHccccchhhHHHHHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcC
Q 009278 307 CDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEH 359 (538)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 359 (538)
++.+-.+++.+.-.....+..+. +.++ .++|...+.......
T Consensus 251 ~~~Ar~LD~~DRyiNsK~aKy~L-------Ra~~----~e~A~~~~~~Ftr~~ 292 (517)
T PF12569_consen 251 MDEARELDLADRYINSKCAKYLL-------RAGR----IEEAEKTASLFTRED 292 (517)
T ss_pred HHHHHhCChhhHHHHHHHHHHHH-------HCCC----HHHHHHHHHhhcCCC
Confidence 99999999987544433333333 3444 888888887766544
No 86
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.75 E-value=4.1e-17 Score=128.96 Aligned_cols=127 Identities=15% Similarity=0.160 Sum_probs=117.8
Q ss_pred HHHHHHHcCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCc
Q 009278 377 ELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTF 456 (538)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 456 (538)
.+++++..+|++ +..+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..|++++.++|++
T Consensus 15 ~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~ 91 (144)
T PRK15359 15 ILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASH 91 (144)
T ss_pred HHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence 445555577775 56789999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhh
Q 009278 457 SKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDGVRRCVQQINK 506 (538)
Q Consensus 457 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 506 (538)
+.+++++|.++...|++++|+..|++++.+.|+++..+...+.+...++.
T Consensus 92 ~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l~~ 141 (144)
T PRK15359 92 PEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMVDT 141 (144)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998877653
No 87
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.75 E-value=1.3e-17 Score=139.41 Aligned_cols=121 Identities=42% Similarity=0.685 Sum_probs=116.0
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHHHHhccCCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHHHHH
Q 009278 1 MADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAH 80 (538)
Q Consensus 1 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 80 (538)
+|+.+...|+.+++.++|.+|+..|.+||+++|+++..|.++|.+|.++|+++.|++.++.++.++|....+|.+||.+|
T Consensus 80 ~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~ 159 (304)
T KOG0553|consen 80 LAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAY 159 (304)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCHHHHHHHHHhhhhcCCCcHHHHhhHHHHHHHHhhcc
Q 009278 81 LGLQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASF 121 (538)
Q Consensus 81 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 121 (538)
..+|++++|+..|+++++++|++..++..|..+...+++..
T Consensus 160 ~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 160 LALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999988887776653
No 88
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.71 E-value=1.8e-15 Score=132.64 Aligned_cols=202 Identities=15% Similarity=0.076 Sum_probs=147.4
Q ss_pred HhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhH
Q 009278 245 ERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDI---SYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDF 321 (538)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 321 (538)
..+..+..++.+|..++..|++++|+..|++++..+|+++ .+++.+|.++...|++++|+..++++++..|+++..
T Consensus 28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~- 106 (235)
T TIGR03302 28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDA- 106 (235)
T ss_pred cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCch-
Confidence 4456778889999999999999999999999999888875 577888999999999999999999999988877543
Q ss_pred HHHHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHh
Q 009278 322 KMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFK 401 (538)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~ 401 (538)
..+++.+|.++.... .......+++++|+..+++++..+|++...+..+..+...
T Consensus 107 ---~~a~~~~g~~~~~~~----------------------~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~ 161 (235)
T TIGR03302 107 ---DYAYYLRGLSNYNQI----------------------DRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYL 161 (235)
T ss_pred ---HHHHHHHHHHHHHhc----------------------ccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHH
Confidence 345666666543220 1123334667777777777777777776554333222111
Q ss_pred cCChHHHHHHHHHHHhcCCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCc---hHHHHHHHHHHHHccCHHHHHH
Q 009278 402 QQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTF---SKGYTRKGAIQFFLKEYDKALE 478 (538)
Q Consensus 402 ~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~ 478 (538)
.+ .. ......+|.+|...|++.+|+..+++++...|+. +.+++.+|.++...|++++|..
T Consensus 162 ~~----~~-------------~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~ 224 (235)
T TIGR03302 162 RN----RL-------------AGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQD 224 (235)
T ss_pred HH----HH-------------HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHH
Confidence 00 00 1123478888999999999999999999887654 5788999999999999999999
Q ss_pred HHHHHhccCCC
Q 009278 479 TYQEGLKHDPQ 489 (538)
Q Consensus 479 ~~~~al~~~p~ 489 (538)
+++......|+
T Consensus 225 ~~~~l~~~~~~ 235 (235)
T TIGR03302 225 AAAVLGANYPD 235 (235)
T ss_pred HHHHHHhhCCC
Confidence 88887766653
No 89
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.71 E-value=5.2e-14 Score=119.94 Aligned_cols=391 Identities=16% Similarity=0.081 Sum_probs=257.9
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHhccCCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhcc--------------CC----
Q 009278 6 KAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVEL--------------KP---- 67 (538)
Q Consensus 6 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------------~p---- 67 (538)
.-.|.+++..|+|++|+..|+-+.+.+..+.+.+.++|.|++.+|.|.+|.....++-+. +.
T Consensus 61 lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~ 140 (557)
T KOG3785|consen 61 LWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRI 140 (557)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHH
Confidence 346889999999999999999999887778899999999999999999999887776431 10
Q ss_pred --------CchHHHHHHHHHHhhccCHHHHHHHHHhhhhcCCCcHHHHhhHHHHHHHHhhcccCCCCCCCCcccccccCC
Q 009278 68 --------DWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGP 139 (538)
Q Consensus 68 --------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (538)
+..+-.+.++.++...-.|.+|++.|++++.-+|+.......++.++.++.-+
T Consensus 141 ~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYy------------------- 201 (557)
T KOG3785|consen 141 LTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYY------------------- 201 (557)
T ss_pred HHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchh-------------------
Confidence 22234556777777888899999999999999999988888899888887433
Q ss_pred chhhcccCCCCCCCcccHHHHHHHHHhhhcCCCchhhhhchHHHHHHHHHHHhhhcCCCCCCCccccccccCCCCCCCcc
Q 009278 140 EMWAKLTADPTTRSYLDQDDFRNMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSK 219 (538)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (538)
+...+.+.--+...|++.-+.-. .+...+ ....
T Consensus 202 -----------------dvsqevl~vYL~q~pdStiA~NL-----kacn~f-Rl~n------------------------ 234 (557)
T KOG3785|consen 202 -----------------DVSQEVLKVYLRQFPDSTIAKNL-----KACNLF-RLIN------------------------ 234 (557)
T ss_pred -----------------hhHHHHHHHHHHhCCCcHHHHHH-----HHHHHh-hhhc------------------------
Confidence 22222223334445554333210 000000 0000
Q ss_pred ccccCCCCCCCCCCccccHHHHHHHHhHHHHHHHHHHHHHHHhc-----ccHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 009278 220 EETRKPESEPEPEPMELTEEEKEAKERKEKALKEKEAGNAAYKK-----KEFEKAIEHYSSALELDDEDISYLTNRAAVY 294 (538)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 294 (538)
. .....+.+.-.++...-+..+..+.+. .+-+.|+..+--.++. -|++..++...|
T Consensus 235 ------------g----r~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~---IPEARlNL~iYy 295 (557)
T KOG3785|consen 235 ------------G----RTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKH---IPEARLNLIIYY 295 (557)
T ss_pred ------------c----chhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhh---ChHhhhhheeee
Confidence 0 001111111112222112222222211 1223455554444443 357889999999
Q ss_pred HHhCCHHHHHHHHHHHHHccccchhhHHHHHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCC----------hhH
Q 009278 295 LEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRN----------PDT 364 (538)
Q Consensus 295 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----------~~~ 364 (538)
..+++..+|+..++. ++|..+..+..-+.+...+|.-...... ..-|...|+-+-..... +..
T Consensus 296 L~q~dVqeA~~L~Kd---l~PttP~EyilKgvv~aalGQe~gSreH----lKiAqqffqlVG~Sa~ecDTIpGRQsmAs~ 368 (557)
T KOG3785|consen 296 LNQNDVQEAISLCKD---LDPTTPYEYILKGVVFAALGQETGSREH----LKIAQQFFQLVGESALECDTIPGRQSMASY 368 (557)
T ss_pred cccccHHHHHHHHhh---cCCCChHHHHHHHHHHHHhhhhcCcHHH----HHHHHHHHHHhcccccccccccchHHHHHH
Confidence 999999999988764 6787755554444455555543333333 44454444433322211 235
Q ss_pred HHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CCchhHhHHHHHHHHhCCchhHH
Q 009278 365 LKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNP-KDPRTYSNRAACYTKLGAMPEGL 443 (538)
Q Consensus 365 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~ 443 (538)
+....++++.+.++........++....+++|......|+|.+|.+.|-+.-...- +.......+++||...++.+.|.
T Consensus 369 fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW 448 (557)
T KOG3785|consen 369 FFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAW 448 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHH
Confidence 56678889999999888888888888999999999999999999999987655442 23445567999999999999998
Q ss_pred HHHHHHHhcCCCch-HHHHHHHHHHHHccCHHHHHHHHHHHhccCCCC
Q 009278 444 KDADKCIELDPTFS-KGYTRKGAIQFFLKEYDKALETYQEGLKHDPQN 490 (538)
Q Consensus 444 ~~~~~al~~~p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 490 (538)
..+-+. ..|... ..+..++...++.+++--|.+.|...-.++|+.
T Consensus 449 ~~~lk~--~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~p 494 (557)
T KOG3785|consen 449 DMMLKT--NTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTP 494 (557)
T ss_pred HHHHhc--CCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCc
Confidence 877442 123222 334556788888999988999999888888863
No 90
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.69 E-value=4.7e-15 Score=128.72 Aligned_cols=317 Identities=19% Similarity=0.202 Sum_probs=206.0
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHhccCCcch----HHHHHHHHHHHhcCCHHHHHHHHHHHhcc------CCCchHHHH
Q 009278 5 AKAKGNAAFSSGDYEAAVRHFTEAISLSPDNH----VLYSNRSAAHASLHNYADALADAKKTVEL------KPDWSKGYS 74 (538)
Q Consensus 5 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~ 74 (538)
+-..|..+++.|++...+.+|+.+++....+. .+|..+|.+|+.+++|++|+++-..-+.+ .-....+.-
T Consensus 20 LalEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssg 99 (639)
T KOG1130|consen 20 LALEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSG 99 (639)
T ss_pred HHHHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccc
Confidence 45678999999999999999999999987764 67889999999999999999875443322 223345667
Q ss_pred HHHHHHhhccCHHHHHHHHHhhhhcCCC------cHHHHhhHHHHHHHHhhcccCCCCCCCCcccccccCCchhhcccCC
Q 009278 75 RLGAAHLGLQDYIEAVNSYKKGLDIDPN------NEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTAD 148 (538)
Q Consensus 75 ~la~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (538)
.+|..+--.|.|++|+.+..+-+.+... ...+++.++.+|...|+.....
T Consensus 100 NLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~------------------------ 155 (639)
T KOG1130|consen 100 NLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLE------------------------ 155 (639)
T ss_pred cccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCC------------------------
Confidence 7999999999999999998887654221 1224444444444443321000
Q ss_pred CCCCCcccHHHHHHHHHhhhcCCCchhhhhchHHHHHHHHHHHhhhcCCCCCCCccccccccCCCCCCCccccccCCCCC
Q 009278 149 PTTRSYLDQDDFRNMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESE 228 (538)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (538)
.|+. .
T Consensus 156 -----------------------------------------------------------------~pee----------~ 160 (639)
T KOG1130|consen 156 -----------------------------------------------------------------APEE----------K 160 (639)
T ss_pred -----------------------------------------------------------------Chhh----------c
Confidence 0000 0
Q ss_pred CCCCCccccHHHHHHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHhCCHHH
Q 009278 229 PEPEPMELTEEEKEAKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDE------DISYLTNRAAVYLEMGKYEE 302 (538)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~~~~~~ 302 (538)
... +.. -...++.|.++|..-+++... ...++-++|..|+.+|+|+.
T Consensus 161 -g~f--------------~~e------------v~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ 213 (639)
T KOG1130|consen 161 -GAF--------------NAE------------VTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQ 213 (639)
T ss_pred -ccc--------------cHH------------HHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHH
Confidence 000 000 011245566666655554322 23567778888888999999
Q ss_pred HHHHHHHHHHccccchhhHHHHHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHH
Q 009278 303 CIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQE 382 (538)
Q Consensus 303 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 382 (538)
|+..-+.-+.+.....+.- ..-+++.++|.++..+++ ++.|+++|++.+.+.. +.=
T Consensus 214 ai~~H~~RL~ia~efGDrA-aeRRA~sNlgN~hiflg~----fe~A~ehYK~tl~LAi---------------elg---- 269 (639)
T KOG1130|consen 214 AIHFHKLRLEIAQEFGDRA-AERRAHSNLGNCHIFLGN----FELAIEHYKLTLNLAI---------------ELG---- 269 (639)
T ss_pred HHHHHHHHHHHHHHhhhHH-HHHHhhcccchhhhhhcc----cHhHHHHHHHHHHHHH---------------Hhc----
Confidence 9988887777655432221 224678888888888888 9999999988876311 100
Q ss_pred HcCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC------CCchhHhHHHHHHHHhCCchhHHHHHHHHHhcC---
Q 009278 383 IFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNP------KDPRTYSNRAACYTKLGAMPEGLKDADKCIELD--- 453 (538)
Q Consensus 383 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--- 453 (538)
.....+...+.+|..|.-..++++||.++.+-+.+.. ....+++.+|..+..+|..++|+.+.++.++..
T Consensus 270 -~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev 348 (639)
T KOG1130|consen 270 -NRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSLEV 348 (639)
T ss_pred -chhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHh
Confidence 1122345566788888888888888888887665532 235677888888888888888888877776552
Q ss_pred --CC-chHHHHHHHHHHHHccC
Q 009278 454 --PT-FSKGYTRKGAIQFFLKE 472 (538)
Q Consensus 454 --p~-~~~~~~~l~~~~~~~g~ 472 (538)
|. ...+..++...-...|.
T Consensus 349 ~D~sgelTar~Nlsdl~~~lG~ 370 (639)
T KOG1130|consen 349 NDTSGELTARDNLSDLILELGQ 370 (639)
T ss_pred CCcchhhhhhhhhHHHHHHhCC
Confidence 21 22344455555444444
No 91
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.68 E-value=1.1e-15 Score=120.85 Aligned_cols=115 Identities=15% Similarity=0.155 Sum_probs=110.0
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHhccCCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHHHHHhhc
Q 009278 4 EAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGL 83 (538)
Q Consensus 4 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 83 (538)
.++..|..++..|++++|+..|++++..+|.++.++..+|.++...|++++|+..|++++.++|+++.+++.+|.++...
T Consensus 26 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~ 105 (144)
T PRK15359 26 TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMM 105 (144)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc
Confidence 46678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHhhhhcCCCcHHHHhhHHHHHHHHh
Q 009278 84 QDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAAS 118 (538)
Q Consensus 84 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 118 (538)
|++++|+..|++++.+.|+++..+..++.+....+
T Consensus 106 g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l~ 140 (144)
T PRK15359 106 GEPGLAREAFQTAIKMSYADASWSEIRQNAQIMVD 140 (144)
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Confidence 99999999999999999999999998888876653
No 92
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.67 E-value=2.1e-13 Score=129.14 Aligned_cols=327 Identities=15% Similarity=0.107 Sum_probs=208.4
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHHHHHhhccCHHHHHHHHHhhhhcCCCcHHHHhhHHHHH
Q 009278 35 NHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNEALKSGLADAK 114 (538)
Q Consensus 35 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 114 (538)
+.+++.....++...|++++|++.+++....-++....+-.+|.++..+|++++|...|...+..+|+|...+..+..+.
T Consensus 3 ~SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~ 82 (517)
T PF12569_consen 3 HSELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEAL 82 (517)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence 45778888999999999999999999999888999999999999999999999999999999999999999888776653
Q ss_pred HHHhhcccCCCCCCCCcccccccCCchhhcccCCCCCCCcccHHHHHHHHHhhhcCCCchhhhhchHHHHHHHHHHHhhh
Q 009278 115 AAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRNMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVK 194 (538)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (538)
.....
T Consensus 83 g~~~~--------------------------------------------------------------------------- 87 (517)
T PF12569_consen 83 GLQLQ--------------------------------------------------------------------------- 87 (517)
T ss_pred hhhcc---------------------------------------------------------------------------
Confidence 22210
Q ss_pred cCCCCCCCccccccccCCCCCCCccccccCCCCCCCCCCccccHHHHHHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHH
Q 009278 195 FKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKEAKERKEKALKEKEAGNAAYKKKEFEKAIEHYS 274 (538)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 274 (538)
....+.+.-..+|+
T Consensus 88 ------------------------------------------------------------------~~~~~~~~~~~~y~ 101 (517)
T PF12569_consen 88 ------------------------------------------------------------------LSDEDVEKLLELYD 101 (517)
T ss_pred ------------------------------------------------------------------cccccHHHHHHHHH
Confidence 00123344455555
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhCCHHH-HHHHHHHHHHccccchhhHHHHHHHHHHhHHHHHHhhhcccChhHHHHHHH
Q 009278 275 SALELDDEDISYLTNRAAVYLEMGKYEE-CIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQ 353 (538)
Q Consensus 275 ~al~~~p~~~~~~~~la~~~~~~~~~~~-A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 353 (538)
+.....|....+... ...+..-..+.. +..++...+... .|..+. .+-..|....+ ..-..+-+.-|.
T Consensus 102 ~l~~~yp~s~~~~rl-~L~~~~g~~F~~~~~~yl~~~l~Kg--vPslF~-------~lk~Ly~d~~K-~~~i~~l~~~~~ 170 (517)
T PF12569_consen 102 ELAEKYPRSDAPRRL-PLDFLEGDEFKERLDEYLRPQLRKG--VPSLFS-------NLKPLYKDPEK-AAIIESLVEEYV 170 (517)
T ss_pred HHHHhCccccchhHh-hcccCCHHHHHHHHHHHHHHHHhcC--CchHHH-------HHHHHHcChhH-HHHHHHHHHHHH
Confidence 555555543322111 111111112222 222333333321 122221 11111111111 000111111111
Q ss_pred HHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCc-hHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHhHHHHH
Q 009278 354 KALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKI-ADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAAC 432 (538)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~ 432 (538)
..+........ .+ ......|.. ..+++.+|..|...|++++|+.+.+++|+..|..++.+...|.+
T Consensus 171 ~~l~~~~~~~~---~~----------~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~Kari 237 (517)
T PF12569_consen 171 NSLESNGSFSN---GD----------DEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARI 237 (517)
T ss_pred HhhcccCCCCC---cc----------ccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 11111000000 00 000011211 34567888989899999999999999999999999999999999
Q ss_pred HHHhCCchhHHHHHHHHHhcCCCchHHHHHHHHHHHHccCHHHHHHHHHHHhccC--CCC-------HHHHHHHHHHHHH
Q 009278 433 YTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHD--PQN-------QELLDGVRRCVQQ 503 (538)
Q Consensus 433 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~-------~~~~~~l~~~~~~ 503 (538)
+...|++.+|...++.+-.+++.+-......+..+++.|+.++|...+..-..-+ |.. .+.....|.++.+
T Consensus 238 lKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r 317 (517)
T PF12569_consen 238 LKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLR 317 (517)
T ss_pred HHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998888888888888889999999988887765543 222 3344567788888
Q ss_pred hhhhccCCCChHHHHHHHHhccC
Q 009278 504 INKAGRGELSPEELKERQAKGMQ 526 (538)
Q Consensus 504 ~~~~~~a~~~~~~~~~~~~~~~~ 526 (538)
.|++..|..-|....+++.....
T Consensus 318 ~~~~~~ALk~~~~v~k~f~~~~~ 340 (517)
T PF12569_consen 318 QGDYGLALKRFHAVLKHFDDFEE 340 (517)
T ss_pred HhhHHHHHHHHHHHHHHHHHHhc
Confidence 88888887666666666655433
No 93
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.67 E-value=1.4e-13 Score=136.14 Aligned_cols=289 Identities=12% Similarity=0.050 Sum_probs=212.5
Q ss_pred hccCCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHHHHHhhccCHHHHHHHHHhhhhcCCCcHHHHh
Q 009278 29 ISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNEALKS 108 (538)
Q Consensus 29 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 108 (538)
...+|.+..++..++..+...|++++|+..++.++..+|+....|+.+|.++...+++.+|... .++...+.+... .
T Consensus 24 ~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~-~ 100 (906)
T PRK14720 24 NNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKW-A 100 (906)
T ss_pred ccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccch-h
Confidence 3568889999999999999999999999999999999999999999999999999999888877 777766655432 1
Q ss_pred hHHHHHHHHhhcccCCCCCCCCcccccccCCchhhcccCCCCCCCcccHHHHHHHHHhhhcCCCchhhhhchHHHHHHHH
Q 009278 109 GLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRNMMKDIQRNPNNLNLYLKDQRVMQALG 188 (538)
Q Consensus 109 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 188 (538)
....++..+
T Consensus 101 ~ve~~~~~i----------------------------------------------------------------------- 109 (906)
T PRK14720 101 IVEHICDKI----------------------------------------------------------------------- 109 (906)
T ss_pred HHHHHHHHH-----------------------------------------------------------------------
Confidence 111111111
Q ss_pred HHHhhhcCCCCCCCccccccccCCCCCCCccccccCCCCCCCCCCccccHHHHHHHHhHHHHHHHHHHHHHHHhcccHHH
Q 009278 189 VLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKEAKERKEKALKEKEAGNAAYKKKEFEK 268 (538)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (538)
...+..-.+++.+|.+|-+.|++++
T Consensus 110 -------------------------------------------------------~~~~~~k~Al~~LA~~Ydk~g~~~k 134 (906)
T PRK14720 110 -------------------------------------------------------LLYGENKLALRTLAEAYAKLNENKK 134 (906)
T ss_pred -------------------------------------------------------HhhhhhhHHHHHHHHHHHHcCChHH
Confidence 1112345578899999999999999
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHHHHHHHhHHHHHHhhhcccChhHH
Q 009278 269 AIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPA 348 (538)
Q Consensus 269 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 348 (538)
|...|+++++.+|+++.++.++|..|... +.++|+.++.+++.. +...++ +..+
T Consensus 135 a~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---------------------~i~~kq----~~~~ 188 (906)
T PRK14720 135 LKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR---------------------FIKKKQ----YVGI 188 (906)
T ss_pred HHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---------------------HHhhhc----chHH
Confidence 99999999999999999999999999999 999999999998874 222223 8888
Q ss_pred HHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHc--CCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhH
Q 009278 349 IETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIF--DPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTY 426 (538)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 426 (538)
.+.+.+.+...+...-. -....+++... .......+.-+-..|...++|++++.+++.+++.+|.+..+.
T Consensus 189 ~e~W~k~~~~~~~d~d~--------f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~ 260 (906)
T PRK14720 189 EEIWSKLVHYNSDDFDF--------FLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAR 260 (906)
T ss_pred HHHHHHHHhcCcccchH--------HHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhH
Confidence 88888888866552210 01111111111 223345555666778888899999999999999999999999
Q ss_pred hHHHHHHHHhCCchhHHHHHHHHHhcCCCchHHHHHHHHHHHHccCHHHHHHHHHHHhccCCCCHHHH
Q 009278 427 SNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELL 494 (538)
Q Consensus 427 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 494 (538)
..++.||. +.|.. ...++..+++.. +--...++..++..|++-+.++|.+--.+
T Consensus 261 ~~l~~~y~--~kY~~-~~~~ee~l~~s~-----------l~~~~~~~~~~i~~fek~i~f~~G~yv~H 314 (906)
T PRK14720 261 EELIRFYK--EKYKD-HSLLEDYLKMSD-----------IGNNRKPVKDCIADFEKNIVFDTGNFVYH 314 (906)
T ss_pred HHHHHHHH--HHccC-cchHHHHHHHhc-----------cccCCccHHHHHHHHHHHeeecCCCEEEE
Confidence 99998887 55555 556666555421 11112456788888888888887764433
No 94
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.67 E-value=5.5e-14 Score=131.94 Aligned_cols=210 Identities=12% Similarity=0.033 Sum_probs=169.3
Q ss_pred hHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHH
Q 009278 246 RKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDED---ISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFK 322 (538)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 322 (538)
+|+.+..+..+|.++...|+++.+...+.++....|.+ .+.....+.++...|++++|...+++++...|++....
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~- 80 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLAL- 80 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHH-
Confidence 35678889999999999999999999999988887754 45677889999999999999999999999999885332
Q ss_pred HHHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhc
Q 009278 323 MIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQ 402 (538)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~ 402 (538)
.. +..+...+. +..+.....+++.. ....+|.....+..+|.++...
T Consensus 81 ------~~-~~~~~~~~~----~~~~~~~~~~~l~~----------------------~~~~~~~~~~~~~~~a~~~~~~ 127 (355)
T cd05804 81 ------KL-HLGAFGLGD----FSGMRDHVARVLPL----------------------WAPENPDYWYLLGMLAFGLEEA 127 (355)
T ss_pred ------HH-hHHHHHhcc----cccCchhHHHHHhc----------------------cCcCCCCcHHHHHHHHHHHHHc
Confidence 21 333333333 32222333333321 1115677788888999999999
Q ss_pred CChHHHHHHHHHHHhcCCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCch----HHHHHHHHHHHHccCHHHHHH
Q 009278 403 QKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFS----KGYTRKGAIQFFLKEYDKALE 478 (538)
Q Consensus 403 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~l~~~~~~~g~~~~A~~ 478 (538)
|++++|+..++++++..|+++.++..+|.++...|++++|+.++++++...|..+ ..+..+|.++...|++++|+.
T Consensus 128 G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~ 207 (355)
T cd05804 128 GQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALA 207 (355)
T ss_pred CCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHH
Confidence 9999999999999999999999999999999999999999999999999877543 346689999999999999999
Q ss_pred HHHHHhccCCC
Q 009278 479 TYQEGLKHDPQ 489 (538)
Q Consensus 479 ~~~~al~~~p~ 489 (538)
.|++++...|.
T Consensus 208 ~~~~~~~~~~~ 218 (355)
T cd05804 208 IYDTHIAPSAE 218 (355)
T ss_pred HHHHHhccccC
Confidence 99999877773
No 95
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.67 E-value=2.3e-14 Score=119.64 Aligned_cols=158 Identities=16% Similarity=0.241 Sum_probs=132.2
Q ss_pred HHHHHhhhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcCChHHHHHHH
Q 009278 333 TALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHY 412 (538)
Q Consensus 333 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 412 (538)
-.|...|+ ++......++.... . ..+...++.++++..+.+++..+|+++..|..+|.++...|++++|+..|
T Consensus 24 ~~Y~~~g~----~~~v~~~~~~~~~~--~-~~~~~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~ 96 (198)
T PRK10370 24 GSYLLSPK----WQAVRAEYQRLADP--L-HQFASQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAY 96 (198)
T ss_pred HHHHHcch----HHHHHHHHHHHhCc--c-ccccCchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 34555555 66654444332221 1 12223567788999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCchhHhHHHHHH-HHhCC--chhHHHHHHHHHhcCCCchHHHHHHHHHHHHccCHHHHHHHHHHHhccCCC
Q 009278 413 TESLRRNPKDPRTYSNRAACY-TKLGA--MPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQ 489 (538)
Q Consensus 413 ~~al~~~~~~~~~~~~la~~~-~~~~~--~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 489 (538)
++++.+.|+++.++..+|.++ ...|+ +++|...++++++.+|+++.+++.+|.+++..|++++|+.+|++++++.|.
T Consensus 97 ~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~ 176 (198)
T PRK10370 97 RQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSP 176 (198)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 999999999999999999975 67787 599999999999999999999999999999999999999999999999988
Q ss_pred CHHHHHHH
Q 009278 490 NQELLDGV 497 (538)
Q Consensus 490 ~~~~~~~l 497 (538)
+..-...+
T Consensus 177 ~~~r~~~i 184 (198)
T PRK10370 177 RVNRTQLV 184 (198)
T ss_pred CccHHHHH
Confidence 76554333
No 96
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.66 E-value=3.1e-12 Score=111.42 Aligned_cols=118 Identities=16% Similarity=0.079 Sum_probs=104.0
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHHHhccCCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC-chHHHHHHHHHHh
Q 009278 3 DEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPD-WSKGYSRLGAAHL 81 (538)
Q Consensus 3 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~ 81 (538)
......|..-+..|+|.+|.....+.-+..+....++..-+.+--++|+++.|-.++.++.+..++ .......++++..
T Consensus 85 ~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll 164 (400)
T COG3071 85 RKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLL 164 (400)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHH
Confidence 445677888899999999999999999888888888888899999999999999999999998554 4567889999999
Q ss_pred hccCHHHHHHHHHhhhhcCCCcHHHHhhHHHHHHHHhhc
Q 009278 82 GLQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASAS 120 (538)
Q Consensus 82 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 120 (538)
..|+++.|.....++++..|.++.+.....++|...|.+
T Consensus 165 ~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~ 203 (400)
T COG3071 165 NRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAW 203 (400)
T ss_pred hCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccH
Confidence 999999999999999999999999988877777776554
No 97
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.65 E-value=2.5e-15 Score=125.90 Aligned_cols=119 Identities=33% Similarity=0.671 Sum_probs=114.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCchHHHHHHHHHHHH
Q 009278 390 DEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFF 469 (538)
Q Consensus 390 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 469 (538)
+-+..-|.-+++.++|.+|+..|.+||+++|.++..|.+.+.+|.++|.++.|++.++.++.++|.+..+|..||.+|..
T Consensus 82 E~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~ 161 (304)
T KOG0553|consen 82 ESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLA 161 (304)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHc
Confidence 34556788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhc
Q 009278 470 LKEYDKALETYQEGLKHDPQNQELLDGVRRCVQQINKAG 508 (538)
Q Consensus 470 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 508 (538)
+|++++|++.|+++++++|+|...+..|..+..++++..
T Consensus 162 ~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 162 LGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred cCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999999999999999887
No 98
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.64 E-value=5.7e-12 Score=109.79 Aligned_cols=233 Identities=15% Similarity=0.149 Sum_probs=158.9
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHHHHHHHhH
Q 009278 253 EKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKG 332 (538)
Q Consensus 253 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (538)
....+.+....|+++.|..-..++++..|.++.+......+|...|++.....++.+.-+..--+.+....+ +.....|
T Consensus 156 ~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~l-e~~a~~g 234 (400)
T COG3071 156 ELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARL-EQQAWEG 234 (400)
T ss_pred HHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHH-HHHHHHH
Confidence 455678888999999999999999999999999999999999999999999999988877543322221110 1111111
Q ss_pred HHHHHhhhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcCChHHHHHHH
Q 009278 333 TALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHY 412 (538)
Q Consensus 333 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 412 (538)
.. .... -+.-.+-+....+ .....-..++.....++.-+...|++++|.+..
T Consensus 235 lL--~q~~----~~~~~~gL~~~W~----------------------~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i 286 (400)
T COG3071 235 LL--QQAR----DDNGSEGLKTWWK----------------------NQPRKLRNDPELVVAYAERLIRLGDHDEAQEII 286 (400)
T ss_pred HH--HHHh----ccccchHHHHHHH----------------------hccHHhhcChhHHHHHHHHHHHcCChHHHHHHH
Confidence 10 0000 0111111111111 111123345667777788888888888888888
Q ss_pred HHHHhcCCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCchHHHHHHHHHHHHccCHHHHHHHHHHHhccCCCCHH
Q 009278 413 TESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQE 492 (538)
Q Consensus 413 ~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 492 (538)
..+++..-+ +.....++ ...-+++..=++..++.++..|++|..+..+|.++++.+.|.+|..+|+.++...|+ ..
T Consensus 287 ~~~Lk~~~D-~~L~~~~~--~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~ 362 (400)
T COG3071 287 EDALKRQWD-PRLCRLIP--RLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS-AS 362 (400)
T ss_pred HHHHHhccC-hhHHHHHh--hcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hh
Confidence 888876543 22222222 235677778888888888888888888888888888888888888888888888776 44
Q ss_pred HHHHHHHHHHHhhhhccCCCChHHHH
Q 009278 493 LLDGVRRCVQQINKAGRGELSPEELK 518 (538)
Q Consensus 493 ~~~~l~~~~~~~~~~~~a~~~~~~~~ 518 (538)
.+..++.++.++|+..+|..+++++.
T Consensus 363 ~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 363 DYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred hHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 56778888888888888876654444
No 99
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.64 E-value=1.7e-13 Score=111.52 Aligned_cols=210 Identities=20% Similarity=0.223 Sum_probs=158.3
Q ss_pred ccHHHHHHHHHHHHhh------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHHHHHHHhHHHHHH
Q 009278 264 KEFEKAIEHYSSALEL------DDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVK 337 (538)
Q Consensus 264 ~~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (538)
.+.++-+++....+.. .|+...++-....+....|+.+-|..++++.....|.+. ++-...|..+..
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~-------RV~~lkam~lEa 98 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSK-------RVGKLKAMLLEA 98 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCh-------hHHHHHHHHHHH
Confidence 4455555555555432 344455566667777788888888888888888888773 344444555555
Q ss_pred hhhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009278 338 MAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLR 417 (538)
Q Consensus 338 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 417 (538)
.+. +++|+++|+..++ .+|.+...+...--+...+|+.-+|++.+...++
T Consensus 99 ~~~----~~~A~e~y~~lL~--------------------------ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~ 148 (289)
T KOG3060|consen 99 TGN----YKEAIEYYESLLE--------------------------DDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLD 148 (289)
T ss_pred hhc----hhhHHHHHHHHhc--------------------------cCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 555 8888888888887 6777777777777777788888888888888888
Q ss_pred cCCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCchHHHHHHHHHHHHcc---CHHHHHHHHHHHhccCCCCHHHH
Q 009278 418 RNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLK---EYDKALETYQEGLKHDPQNQELL 494 (538)
Q Consensus 418 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~ 494 (538)
..+.+.++|..++.+|...|+|++|.-++++.+-+.|.++..+..+|.+++-+| ++.-|.++|.++++++|.+...+
T Consensus 149 ~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral 228 (289)
T KOG3060|consen 149 KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRAL 228 (289)
T ss_pred HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHH
Confidence 888888888888888888888888888888888888888888888888888766 56678888888888888888888
Q ss_pred HHHHHHHHHhhhhccC
Q 009278 495 DGVRRCVQQINKAGRG 510 (538)
Q Consensus 495 ~~l~~~~~~~~~~~~a 510 (538)
+.+..+-..+-+..++
T Consensus 229 ~GI~lc~~~la~~sk~ 244 (289)
T KOG3060|consen 229 FGIYLCGSALAQISKA 244 (289)
T ss_pred HHHHHHHHHHHHHhHH
Confidence 7777665555544333
No 100
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.62 E-value=1.4e-14 Score=114.77 Aligned_cols=124 Identities=19% Similarity=0.251 Sum_probs=115.4
Q ss_pred HHHHHHHcCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCc
Q 009278 377 ELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTF 456 (538)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 456 (538)
.+.+++..+|++......+|..+...|++++|+..+++++..+|.++.++..+|.++...|++++|+.++++++..+|.+
T Consensus 5 ~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~ 84 (135)
T TIGR02552 5 TLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDD 84 (135)
T ss_pred hHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 45566669999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHhccCCCCHHHHHHHHHH
Q 009278 457 SKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDGVRRC 500 (538)
Q Consensus 457 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 500 (538)
+..++.+|.++...|++++|+..|+++++++|++.........+
T Consensus 85 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 128 (135)
T TIGR02552 85 PRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSELKERA 128 (135)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 99999999999999999999999999999999998866554444
No 101
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.61 E-value=1.2e-14 Score=126.22 Aligned_cols=233 Identities=18% Similarity=0.176 Sum_probs=171.0
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhhCC------CCHHHHHHHHHHHHHhCC--------------------HHHHHH
Q 009278 252 KEKEAGNAAYKKKEFEKAIEHYSSALELDD------EDISYLTNRAAVYLEMGK--------------------YEECIK 305 (538)
Q Consensus 252 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~~~--------------------~~~A~~ 305 (538)
+.-++|.++.-.|.|++|+.+..+-+.+.. ....+++++|.+|...|+ ++.|.+
T Consensus 97 ssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~ 176 (639)
T KOG1130|consen 97 SSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVK 176 (639)
T ss_pred ccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHH
Confidence 344678888889999999999888776532 235789999999987764 344555
Q ss_pred HHHHHHHccccchhhHHHHHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcC
Q 009278 306 DCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFD 385 (538)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 385 (538)
+|..-+++.... ......++++-++|..|+-+|+ |+.|+..-+.-+.+... +=. .
T Consensus 177 fy~eNL~l~~~l-gDr~aqGRa~GnLGNTyYlLGd----f~~ai~~H~~RL~ia~e---------------fGD-----r 231 (639)
T KOG1130|consen 177 FYMENLELSEKL-GDRLAQGRAYGNLGNTYYLLGD----FDQAIHFHKLRLEIAQE---------------FGD-----R 231 (639)
T ss_pred HHHHHHHHHHHh-hhHHhhcchhcccCceeeeecc----HHHHHHHHHHHHHHHHH---------------hhh-----H
Confidence 555555544332 2222337788888888888888 99999887776653211 111 1
Q ss_pred CCchHHHHHHHHHHHhcCChHHHHHHHHHHHhcC----C--CCchhHhHHHHHHHHhCCchhHHHHHHHHHhcC------
Q 009278 386 PKIADEEREKGNEFFKQQKYPEAIQHYTESLRRN----P--KDPRTYSNRAACYTKLGAMPEGLKDADKCIELD------ 453 (538)
Q Consensus 386 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~----~--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~------ 453 (538)
...-.++.++|.++.-.|+++.|+++|++.+.+. . ..+...+.+|..|.-..++++|+.++.+-+.+.
T Consensus 232 AaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~Dr 311 (639)
T KOG1130|consen 232 AAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDR 311 (639)
T ss_pred HHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1224577899999999999999999999876442 2 235678899999999999999999999888763
Q ss_pred CCchHHHHHHHHHHHHccCHHHHHHHHHHHhccC-----CC-CHHHHHHHHHHHHHhhhhcc
Q 009278 454 PTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHD-----PQ-NQELLDGVRRCVQQINKAGR 509 (538)
Q Consensus 454 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-----p~-~~~~~~~l~~~~~~~~~~~~ 509 (538)
-....+++.+|..+...|..++|+.+.++.+++. |. ...+..++......+|..+.
T Consensus 312 iGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~sgelTar~Nlsdl~~~lG~~ds 373 (639)
T KOG1130|consen 312 IGELRACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDTSGELTARDNLSDLILELGQEDS 373 (639)
T ss_pred hhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcchhhhhhhhhHHHHHHhCCCcc
Confidence 2346789999999999999999999888887652 22 34566777777777776654
No 102
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.61 E-value=3e-13 Score=110.11 Aligned_cols=187 Identities=16% Similarity=0.052 Sum_probs=159.5
Q ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHHH
Q 009278 247 KEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIAR 326 (538)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 326 (538)
++....+-....+....|+.+.|..++++.....|.+..+....|..+...|++++|+++|+..++-+|.+...
T Consensus 49 ~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~------ 122 (289)
T KOG3060|consen 49 DEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVI------ 122 (289)
T ss_pred chHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHH------
Confidence 44556666777888899999999999999999999999999999999999999999999999999999988433
Q ss_pred HHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcCChH
Q 009278 327 ALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYP 406 (538)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 406 (538)
+-+.-.+.-.+|+ .-+|++.+...++ ..+.+.++|..++.+|...|+|+
T Consensus 123 -~KRKlAilka~GK----~l~aIk~ln~YL~--------------------------~F~~D~EAW~eLaeiY~~~~~f~ 171 (289)
T KOG3060|consen 123 -RKRKLAILKAQGK----NLEAIKELNEYLD--------------------------KFMNDQEAWHELAEIYLSEGDFE 171 (289)
T ss_pred -HHHHHHHHHHcCC----cHHHHHHHHHHHH--------------------------HhcCcHHHHHHHHHHHHhHhHHH
Confidence 3333333444444 6677777777777 88999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCchhHhHHHHHHHHhC---CchhHHHHHHHHHhcCCCchHHHHHHHHHHHHc
Q 009278 407 EAIQHYTESLRRNPKDPRTYSNRAACYTKLG---AMPEGLKDADKCIELDPTFSKGYTRKGAIQFFL 470 (538)
Q Consensus 407 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 470 (538)
+|.-++++++-+.|.++..+..+|.+++-+| ++.-|.++|.++++++|.+..+++.+-.+-...
T Consensus 172 kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~l 238 (289)
T KOG3060|consen 172 KAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCGSAL 238 (289)
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988877 467899999999999998888887776555443
No 103
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.60 E-value=9.9e-14 Score=114.18 Aligned_cols=175 Identities=15% Similarity=0.152 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHHHHHHHhHHHHHHhhhcccChh
Q 009278 267 EKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYE 346 (538)
Q Consensus 267 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (538)
..+...+-.....+|++..+ ..++..+...|+-+.+..+..++...+|.+. ..+...|......|+ +.
T Consensus 50 ~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~-------~ll~~~gk~~~~~g~----~~ 117 (257)
T COG5010 50 QGAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDR-------ELLAAQGKNQIRNGN----FG 117 (257)
T ss_pred hHHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccH-------HHHHHHHHHHHHhcc----hH
Confidence 33555555555566666666 6666666666666666666555555555442 222223333333333 44
Q ss_pred HHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhH
Q 009278 347 PAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTY 426 (538)
Q Consensus 347 ~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 426 (538)
.|+..++++.. ..|+++.+|..+|.+|.+.|+++.|...|.+++++.|.++.+.
T Consensus 118 ~A~~~~rkA~~--------------------------l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~ 171 (257)
T COG5010 118 EAVSVLRKAAR--------------------------LAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIA 171 (257)
T ss_pred HHHHHHHHHhc--------------------------cCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhh
Confidence 44444444444 4455555555555555555555555555555555555555555
Q ss_pred hHHHHHHHHhCCchhHHHHHHHHHhcCCCchHHHHHHHHHHHHccCHHHHHHH
Q 009278 427 SNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALET 479 (538)
Q Consensus 427 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 479 (538)
.++|..+.-.|+++.|..++..+...-+.+..+..+++.+...+|++.+|...
T Consensus 172 nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 172 NNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred hhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhh
Confidence 55555555555555555555555444444455555555555555555555443
No 104
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.60 E-value=5.3e-13 Score=111.21 Aligned_cols=280 Identities=17% Similarity=0.146 Sum_probs=201.0
Q ss_pred HHhhcCCHHHHHHHHHHHhccCCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHHHHHhhccCHHHHH
Q 009278 11 AAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAV 90 (538)
Q Consensus 11 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~ 90 (538)
.+++..+|..||+++..-.+.+|.+...+..+|.||+...+|..|-.+|++.-.+.|......+..+..+...+.+.+|+
T Consensus 19 ~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADAL 98 (459)
T KOG4340|consen 19 RLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADAL 98 (459)
T ss_pred HHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHH
Confidence 34788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhcCCCcHHHHhhHHHHHHHHhhcccCCCCCCCCcccccccCCchhhcccCCCCCCCcccHHHHHHHHHhhhcC
Q 009278 91 NSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRNMMKDIQRN 170 (538)
Q Consensus 91 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 170 (538)
......... +.......++..... ..
T Consensus 99 rV~~~~~D~----~~L~~~~lqLqaAIk--------------------------------------------------Ys 124 (459)
T KOG4340|consen 99 RVAFLLLDN----PALHSRVLQLQAAIK--------------------------------------------------YS 124 (459)
T ss_pred HHHHHhcCC----HHHHHHHHHHHHHHh--------------------------------------------------cc
Confidence 887765432 222222222211110 00
Q ss_pred CCchhhhhchHHHHHHHHHHHhhhcCCCCCCCccccccccCCCCCCCccccccCCCCCCCCCCccccHHHHHHHHhH--H
Q 009278 171 PNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKEAKERK--E 248 (538)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 248 (538)
.+ .+.-......+.| .
T Consensus 125 e~--------------------------------------------------------------Dl~g~rsLveQlp~en 142 (459)
T KOG4340|consen 125 EG--------------------------------------------------------------DLPGSRSLVEQLPSEN 142 (459)
T ss_pred cc--------------------------------------------------------------cCcchHHHHHhccCCC
Confidence 00 0011111112222 3
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc----cccch------
Q 009278 249 KALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVER----GRELR------ 318 (538)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~----~~~~~------ 318 (538)
.+....+.|.+.++.|+++.|++-|+.+++...-++-.-++++.++++.|++..|+++...+++. .|+..
T Consensus 143 ~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~te 222 (459)
T KOG4340|consen 143 EADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTE 222 (459)
T ss_pred ccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceec
Confidence 56677888999999999999999999999999999999999999999999999999998887764 33310
Q ss_pred ------------hhHHHHHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCCh------hHH------HhhhhHHHH
Q 009278 319 ------------SDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNP------DTL------KKLNEAEKA 374 (538)
Q Consensus 319 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~------~~~~~~~~a 374 (538)
-....+..++.....+++..++ ++.|.+.+.. ..|.. ..+ ..-+++...
T Consensus 223 giDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n----~eAA~eaLtD---mPPRaE~elDPvTLHN~Al~n~~~~p~~g 295 (459)
T KOG4340|consen 223 GIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRN----YEAAQEALTD---MPPRAEEELDPVTLHNQALMNMDARPTEG 295 (459)
T ss_pred cCchhcccchHHHHHHHHHHHhhhhhhhhhhccc----HHHHHHHhhc---CCCcccccCCchhhhHHHHhcccCCcccc
Confidence 0112334556666667777777 7777655432 22221 111 122445566
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHhcCChHHHHHHHH
Q 009278 375 KKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYT 413 (538)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 413 (538)
..-+.-.+..+|--.+...++-.+|++..-|+-|...+-
T Consensus 296 ~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADvLA 334 (459)
T KOG4340|consen 296 FEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADVLA 334 (459)
T ss_pred HHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHHh
Confidence 666666777888778888888888888887877776543
No 105
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.60 E-value=2e-13 Score=134.95 Aligned_cols=225 Identities=12% Similarity=0.064 Sum_probs=176.5
Q ss_pred HhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhh--HH
Q 009278 245 ERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSD--FK 322 (538)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~ 322 (538)
..|....++..+...+...+++++|+..++.+++..|+...+++.+|.++.+.+++.++... .++...+.+... ..
T Consensus 26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve 103 (906)
T PRK14720 26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVE 103 (906)
T ss_pred CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHH
Confidence 34678999999999999999999999999999999999999999999999999999988877 777766654311 00
Q ss_pred HH----------HHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHH
Q 009278 323 MI----------ARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEE 392 (538)
Q Consensus 323 ~~----------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 392 (538)
.+ -.+++.+|.+|..+++ .++|...|+++++ .+|+++.+.
T Consensus 104 ~~~~~i~~~~~~k~Al~~LA~~Ydk~g~----~~ka~~~yer~L~--------------------------~D~~n~~aL 153 (906)
T PRK14720 104 HICDKILLYGENKLALRTLAEAYAKLNE----NKKLKGVWERLVK--------------------------ADRDNPEIV 153 (906)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHcCC----hHHHHHHHHHHHh--------------------------cCcccHHHH
Confidence 01 1345555555555555 5555555555555 888999999
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCchHHHH--------HHH
Q 009278 393 REKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYT--------RKG 464 (538)
Q Consensus 393 ~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~--------~l~ 464 (538)
.++|..|... +.++|+.++.+|+.. +...+++..+..++.+.+..+|.+.+.+. .++
T Consensus 154 Nn~AY~~ae~-dL~KA~~m~~KAV~~--------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~ 218 (906)
T PRK14720 154 KKLATSYEEE-DKEKAITYLKKAIYR--------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHRE 218 (906)
T ss_pred HHHHHHHHHh-hHHHHHHHHHHHHHH--------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhc
Confidence 9999999888 999999999988875 66677888888888888888888765422 223
Q ss_pred ------------HHHHHccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhccCCCChHHHHH
Q 009278 465 ------------AIQFFLKEYDKALETYQEGLKHDPQNQELLDGVRRCVQQINKAGRGELSPEELKE 519 (538)
Q Consensus 465 ------------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 519 (538)
..|...++|++++..++.+++.+|+|..+...++.++. +++.. ...++.+.+
T Consensus 219 ~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~--~kY~~-~~~~ee~l~ 282 (906)
T PRK14720 219 FTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK--EKYKD-HSLLEDYLK 282 (906)
T ss_pred cchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH--HHccC-cchHHHHHH
Confidence 67788899999999999999999999999999999998 56655 334443333
No 106
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.59 E-value=4.7e-14 Score=108.36 Aligned_cols=118 Identities=6% Similarity=0.009 Sum_probs=106.8
Q ss_pred cC-CCchHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCchHHHHH
Q 009278 384 FD-PKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTR 462 (538)
Q Consensus 384 ~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 462 (538)
+. ++..+..+.+|..++..|++++|...|+-+...+|.++..|++||.++..+|++.+|+..|.+++.++|+++..+++
T Consensus 29 ~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ 108 (157)
T PRK15363 29 DDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWA 108 (157)
T ss_pred CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHH
Confidence 66 77888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHccCHHHHHHHHHHHhccC---CCCHHHHHHHHHHH
Q 009278 463 KGAIQFFLKEYDKALETYQEGLKHD---PQNQELLDGVRRCV 501 (538)
Q Consensus 463 l~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~l~~~~ 501 (538)
+|.|++..|+.+.|.+.|+.++... |.+..+...-...+
T Consensus 109 ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~~~~~l~~~A~~~L 150 (157)
T PRK15363 109 AAECYLACDNVCYAIKALKAVVRICGEVSEHQILRQRAEKML 150 (157)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhccChhHHHHHHHHHHHH
Confidence 9999999999999999999999986 44444444333333
No 107
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.58 E-value=5e-14 Score=131.36 Aligned_cols=234 Identities=14% Similarity=0.148 Sum_probs=171.9
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHHHHHH
Q 009278 250 ALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALT 329 (538)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (538)
......++..+...|-...|+..|++. ..|-....||...|+..+|..+..+-++.+|+ +..|.
T Consensus 398 Wq~q~~laell~slGitksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~lek~~d--------~~lyc 461 (777)
T KOG1128|consen 398 WQLQRLLAELLLSLGITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELEKDPD--------PRLYC 461 (777)
T ss_pred chHHHHHHHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhcCCCc--------chhHH
Confidence 344566788888888888888888874 56777888899999888888888888884444 56777
Q ss_pred HhHHHHHHhhhcccChhHHHHHHHHHHhcC--CChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcCChHH
Q 009278 330 RKGTALVKMAKCSKDYEPAIETFQKALTEH--RNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPE 407 (538)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 407 (538)
.+|++.....- |++|.+..+..-... .-+......+++.++.+.++..++++|-....|+.+|.+..+.++++.
T Consensus 462 ~LGDv~~d~s~----yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~ 537 (777)
T KOG1128|consen 462 LLGDVLHDPSL----YEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQA 537 (777)
T ss_pred HhhhhccChHH----HHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHH
Confidence 77776666666 777777776554431 111223335677788888888888888888888888888888888888
Q ss_pred HHHHHHHHHhcCCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCchHHHHHHHHHHHHccCHHHHHHHHHHHhccC
Q 009278 408 AIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHD 487 (538)
Q Consensus 408 A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 487 (538)
|...|..++.+.|++..+|++++..|.+.|+-.+|...++++++.+-++..+|-+.-.+....|.+++|+..|.+.+.+.
T Consensus 538 av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 538 AVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred HHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 88888888888888888888888888888888888888888888777777778777777888888888888888777653
Q ss_pred --CCCHHHHHHHHHHHHH
Q 009278 488 --PQNQELLDGVRRCVQQ 503 (538)
Q Consensus 488 --p~~~~~~~~l~~~~~~ 503 (538)
-.++.+...+......
T Consensus 618 ~~~~d~~vl~~iv~~~~~ 635 (777)
T KOG1128|consen 618 KKYKDDEVLLIIVRTVLE 635 (777)
T ss_pred hhcccchhhHHHHHHHHh
Confidence 2345555555544443
No 108
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.58 E-value=4.4e-13 Score=110.41 Aligned_cols=174 Identities=17% Similarity=0.149 Sum_probs=152.1
Q ss_pred HHHHHHHHHHHccccchhhHHHHHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHH
Q 009278 302 ECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQ 381 (538)
Q Consensus 302 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 381 (538)
.+...+-.....+|++... ......+...|+ -+.+.....++..
T Consensus 51 ~a~~al~~~~~~~p~d~~i--------~~~a~a~~~~G~----a~~~l~~~~~~~~------------------------ 94 (257)
T COG5010 51 GAAAALGAAVLRNPEDLSI--------AKLATALYLRGD----ADSSLAVLQKSAI------------------------ 94 (257)
T ss_pred HHHHHHHHHHhcCcchHHH--------HHHHHHHHhccc----ccchHHHHhhhhc------------------------
Confidence 3566666667778877443 344444444444 7778888877766
Q ss_pred HHcCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCchHHHH
Q 009278 382 EIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYT 461 (538)
Q Consensus 382 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 461 (538)
..|.+......+|...+..|+|..|+..++++....|+++.+|..+|.+|.+.|++++|...|.+++++.|+.+.+..
T Consensus 95 --~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~n 172 (257)
T COG5010 95 --AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIAN 172 (257)
T ss_pred --cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhh
Confidence 678888888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhccCCCC
Q 009278 462 RKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDGVRRCVQQINKAGRGELS 513 (538)
Q Consensus 462 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~ 513 (538)
++|..+.-.|+++.|..++..+....+.+..+..+++.+....|+...|+..
T Consensus 173 Nlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 173 NLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhh
Confidence 9999999999999999999999999999999999999999999999998754
No 109
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.57 E-value=7.5e-14 Score=107.24 Aligned_cols=101 Identities=10% Similarity=0.059 Sum_probs=96.9
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHHHhccCCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHHHHHhh
Q 009278 3 DEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLG 82 (538)
Q Consensus 3 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 82 (538)
+.++..|..++..|++++|...|+-+...+|.++..|++||.|+..+|+|.+|+..|.+++.++|+++..++.+|.|++.
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHHHHhhhhcCCCc
Q 009278 83 LQDYIEAVNSYKKGLDIDPNN 103 (538)
Q Consensus 83 ~~~~~~A~~~~~~al~~~p~~ 103 (538)
.|+.+.|.+.|+.++.....+
T Consensus 116 lG~~~~A~~aF~~Ai~~~~~~ 136 (157)
T PRK15363 116 CDNVCYAIKALKAVVRICGEV 136 (157)
T ss_pred cCCHHHHHHHHHHHHHHhccC
Confidence 999999999999999886433
No 110
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.57 E-value=5.2e-14 Score=129.33 Aligned_cols=119 Identities=33% Similarity=0.582 Sum_probs=114.5
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHHHHhccCCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHHHHH
Q 009278 1 MADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAH 80 (538)
Q Consensus 1 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 80 (538)
|+..+...|..++..|+|++|+..|++++..+|+++.+++.+|.++..+|++++|+..+++++.++|+++.+++.+|.++
T Consensus 1 ~~~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~ 80 (356)
T PLN03088 1 MAKDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTAC 80 (356)
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence 67789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCHHHHHHHHHhhhhcCCCcHHHHhhHHHHHHHHhh
Q 009278 81 LGLQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASA 119 (538)
Q Consensus 81 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 119 (538)
..+|++++|+..|+++++++|++..+...+..+...+..
T Consensus 81 ~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~~ 119 (356)
T PLN03088 81 MKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKIAE 119 (356)
T ss_pred HHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999888777744
No 111
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.57 E-value=4e-13 Score=118.76 Aligned_cols=166 Identities=16% Similarity=0.224 Sum_probs=107.5
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHHHHHHHhH
Q 009278 253 EKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKG 332 (538)
Q Consensus 253 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (538)
....|.++...|++++|++.+.+. .+.+.......++..+++++.|.+.++.+.+.+.+. ....++.+|..+.
T Consensus 105 ~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~--~l~qLa~awv~l~ 177 (290)
T PF04733_consen 105 QLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDS--ILTQLAEAWVNLA 177 (290)
T ss_dssp HHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCH--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcH--HHHHHHHHHHHHH
Confidence 445577888899999999888764 567888888899999999999999999988776553 2222333333322
Q ss_pred HHHHHhhhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcCChHHHHHHH
Q 009278 333 TALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHY 412 (538)
Q Consensus 333 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 412 (538)
. | .+.+.+|.-.|+.... ..+.++..+..++.+++.+|+|++|...+
T Consensus 178 ~-----g--~e~~~~A~y~f~El~~--------------------------~~~~t~~~lng~A~~~l~~~~~~eAe~~L 224 (290)
T PF04733_consen 178 T-----G--GEKYQDAFYIFEELSD--------------------------KFGSTPKLLNGLAVCHLQLGHYEEAEELL 224 (290)
T ss_dssp H-----T--TTCCCHHHHHHHHHHC--------------------------CS--SHHHHHHHHHHHHHCT-HHHHHHHH
T ss_pred h-----C--chhHHHHHHHHHHHHh--------------------------ccCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 1 1 1236666666666554 34455666666777777777777777777
Q ss_pred HHHHhcCCCCchhHhHHHHHHHHhCCc-hhHHHHHHHHHhcCCCchH
Q 009278 413 TESLRRNPKDPRTYSNRAACYTKLGAM-PEGLKDADKCIELDPTFSK 458 (538)
Q Consensus 413 ~~al~~~~~~~~~~~~la~~~~~~~~~-~~A~~~~~~al~~~p~~~~ 458 (538)
.+++..+|.++.++.+++.+...+|+. +.+.+++.+....+|+++.
T Consensus 225 ~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~ 271 (290)
T PF04733_consen 225 EEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPL 271 (290)
T ss_dssp HHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHH
T ss_pred HHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChH
Confidence 777777777777777777776666666 4455566665556666554
No 112
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.57 E-value=6.8e-13 Score=110.87 Aligned_cols=157 Identities=9% Similarity=0.097 Sum_probs=130.4
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHHHHHHHhHHH
Q 009278 255 EAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTA 334 (538)
Q Consensus 255 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (538)
.-+..|+..|+++......++.. +|.. -+...++.++++..++++++.+|++ ...|..+|.+
T Consensus 21 ~~~~~Y~~~g~~~~v~~~~~~~~--~~~~---------~~~~~~~~~~~i~~l~~~L~~~P~~-------~~~w~~Lg~~ 82 (198)
T PRK10370 21 LCVGSYLLSPKWQAVRAEYQRLA--DPLH---------QFASQQTPEAQLQALQDKIRANPQN-------SEQWALLGEY 82 (198)
T ss_pred HHHHHHHHcchHHHHHHHHHHHh--Cccc---------cccCchhHHHHHHHHHHHHHHCCCC-------HHHHHHHHHH
Confidence 34567888999888655543321 2221 1112677899999999999999999 6777888888
Q ss_pred HHHhhhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHH-HhcCC--hHHHHHH
Q 009278 335 LVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEF-FKQQK--YPEAIQH 411 (538)
Q Consensus 335 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~-~~~~~--~~~A~~~ 411 (538)
+...++ +++|+..|++++. .+|+++.++..+|.++ ...|+ +++|...
T Consensus 83 ~~~~g~----~~~A~~a~~~Al~--------------------------l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~ 132 (198)
T PRK10370 83 YLWRND----YDNALLAYRQALQ--------------------------LRGENAELYAALATVLYYQAGQHMTPQTREM 132 (198)
T ss_pred HHHCCC----HHHHHHHHHHHHH--------------------------hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence 888888 9999999999999 8999999999999975 67777 5999999
Q ss_pred HHHHHhcCCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCchHH
Q 009278 412 YTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKG 459 (538)
Q Consensus 412 ~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 459 (538)
++++++.+|+++.+++.+|.+++..|++++|+.+|+++++..|.+..-
T Consensus 133 l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r 180 (198)
T PRK10370 133 IDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNR 180 (198)
T ss_pred HHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccH
Confidence 999999999999999999999999999999999999999998876543
No 113
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.57 E-value=4e-11 Score=109.58 Aligned_cols=355 Identities=14% Similarity=0.113 Sum_probs=221.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHHHHHhhccCHHHHHHHHHhhhhcCCCcHHHHhhHHHHHHHH
Q 009278 38 LYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAA 117 (538)
Q Consensus 38 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 117 (538)
.++.=-..+...|+|++|.+...+++...|++..+....-.+....++|++|+...++-....-.+.- .+.-+.+..++
T Consensus 14 ~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~-~fEKAYc~Yrl 92 (652)
T KOG2376|consen 14 ALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSF-FFEKAYCEYRL 92 (652)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchh-hHHHHHHHHHc
Confidence 33344455678899999999999999999999999999999999999999999655543322212211 13334444443
Q ss_pred hhcccCCCCCCCCcccccccCCchhhcccCCCCCCCcccHHHHHHHHHhhhcCCCchhhhhchHHHHHHHHHHHhhhcCC
Q 009278 118 SASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRNMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKG 197 (538)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (538)
+.. +.++..+..
T Consensus 93 nk~----------------------------------------Dealk~~~~---------------------------- 104 (652)
T KOG2376|consen 93 NKL----------------------------------------DEALKTLKG---------------------------- 104 (652)
T ss_pred ccH----------------------------------------HHHHHHHhc----------------------------
Confidence 322 111111110
Q ss_pred CCCCCccccccccCCCCCCCccccccCCCCCCCCCCccccHHHHHHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Q 009278 198 PTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKEAKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSAL 277 (538)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 277 (538)
.++.........|.++++.|+|++|+..|+..+
T Consensus 105 -----------------------------------------------~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~ 137 (652)
T KOG2376|consen 105 -----------------------------------------------LDRLDDKLLELRAQVLYRLERYDEALDIYQHLA 137 (652)
T ss_pred -----------------------------------------------ccccchHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 011223356667899999999999999999986
Q ss_pred hhC------------------------------CC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--------cccch
Q 009278 278 ELD------------------------------DE-DISYLTNRAAVYLEMGKYEECIKDCDKAVER--------GRELR 318 (538)
Q Consensus 278 ~~~------------------------------p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~ 318 (538)
+.+ |. +.+.+++.|.++...|+|.+|++.+++++.+ +.+..
T Consensus 138 kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eE 217 (652)
T KOG2376|consen 138 KNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEE 217 (652)
T ss_pred hcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchh
Confidence 432 22 3467889999999999999999999999443 22223
Q ss_pred hhHHHHHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCChhH-----------------------HHhh-------
Q 009278 319 SDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDT-----------------------LKKL------- 368 (538)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-----------------------~~~~------- 368 (538)
.....+..+...++.++..+|+ .++|...|...+...+.... +...
T Consensus 218 eie~el~~IrvQlayVlQ~~Gq----t~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l 293 (652)
T KOG2376|consen 218 EIEEELNPIRVQLAYVLQLQGQ----TAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKL 293 (652)
T ss_pred hHHHHHHHHHHHHHHHHHHhcc----hHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHh
Confidence 3445567778888899999999 99999999999987654220 0000
Q ss_pred ---------------------------hhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 009278 369 ---------------------------NEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPK 421 (538)
Q Consensus 369 ---------------------------~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~ 421 (538)
+.-+.+.+...+.....|....-.............+.+|++++....+.+|.
T Consensus 294 ~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~ 373 (652)
T KOG2376|consen 294 AEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPE 373 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCc
Confidence 00011111111111112222222222333333444688888888888888887
Q ss_pred C-chhHhHHHHHHHHhCCchhHHHHHH--------HHHhcCCCchHHHHHHHHHHHHccCHHHHHHHHHHHhc-------
Q 009278 422 D-PRTYSNRAACYTKLGAMPEGLKDAD--------KCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLK------- 485 (538)
Q Consensus 422 ~-~~~~~~la~~~~~~~~~~~A~~~~~--------~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~------- 485 (538)
+ ..+.+.++.+...+|+++.|+..+. ...+.. ..|.+-..+-..+.+.++.+.|...+.+|+.
T Consensus 374 ~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~-~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t 452 (652)
T KOG2376|consen 374 KSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAK-HLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQT 452 (652)
T ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhc-cChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcc
Confidence 6 5678888889999999999999988 333332 2233334444556666665445555544443
Q ss_pred cCCCCHHHHHHHHHHHHHhhhhccCCCC
Q 009278 486 HDPQNQELLDGVRRCVQQINKAGRGELS 513 (538)
Q Consensus 486 ~~p~~~~~~~~l~~~~~~~~~~~~a~~~ 513 (538)
-.+.-...+..++....+.|+.++|...
T Consensus 453 ~s~~l~~~~~~aa~f~lr~G~~~ea~s~ 480 (652)
T KOG2376|consen 453 GSIALLSLMREAAEFKLRHGNEEEASSL 480 (652)
T ss_pred cchHHHhHHHHHhHHHHhcCchHHHHHH
Confidence 3444444555555555566766666644
No 114
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.52 E-value=4.2e-11 Score=126.99 Aligned_cols=353 Identities=13% Similarity=0.064 Sum_probs=222.9
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHHH----hccCCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC---------c
Q 009278 3 DEAKAKGNAAFSSGDYEAAVRHFTEA----ISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPD---------W 69 (538)
Q Consensus 3 ~~~~~~g~~~~~~g~~~~A~~~~~~a----l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---------~ 69 (538)
+.+...|..+...|++..+..++..+ ...+|. .....+.++...|++++|...+..+....+. .
T Consensus 375 ~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~---l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~ 451 (903)
T PRK04841 375 DILLQHGWSLFNQGELSLLEECLNALPWEVLLENPR---LVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQ 451 (903)
T ss_pred HHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcc---hHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHH
Confidence 34455677777788888777776654 223454 2355677778888888888888877654221 1
Q ss_pred hHHHHHHHHHHhhccCHHHHHHHHHhhhhcCCCcHH-----HHhhHHHHHHHHhhcccCCCCCCCCcccccccCCchhhc
Q 009278 70 SKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNEA-----LKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAK 144 (538)
Q Consensus 70 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~-----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (538)
......+|.++...|++++|...+++++...|.... +...++.++...|+..
T Consensus 452 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~----------------------- 508 (903)
T PRK04841 452 AEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELA----------------------- 508 (903)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHH-----------------------
Confidence 234556777888888888888888888875444322 2233333333333321
Q ss_pred ccCCCCCCCcccHHHHHHHHHhhhcCCCchhhhhchHHHHHHHHHHHhhhcCCCCCCCccccccccCCCCCCCccccccC
Q 009278 145 LTADPTTRSYLDQDDFRNMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRK 224 (538)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (538)
.+...+.+.+.....
T Consensus 509 -------------~A~~~~~~al~~~~~---------------------------------------------------- 523 (903)
T PRK04841 509 -------------RALAMMQQTEQMARQ---------------------------------------------------- 523 (903)
T ss_pred -------------HHHHHHHHHHHHHhh----------------------------------------------------
Confidence 111111111110000
Q ss_pred CCCCCCCCCccccHHHHHHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCC--------CHHHHHHHHHHHHH
Q 009278 225 PESEPEPEPMELTEEEKEAKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDE--------DISYLTNRAAVYLE 296 (538)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--------~~~~~~~la~~~~~ 296 (538)
..........+..+|.++...|+++.|...+.+++..... ....+..+|.++..
T Consensus 524 ------------------~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 585 (903)
T PRK04841 524 ------------------HDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWE 585 (903)
T ss_pred ------------------hcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHH
Confidence 0001123446677899999999999999999999876221 22345678899999
Q ss_pred hCCHHHHHHHHHHHHHccccchhhHHHHHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHH
Q 009278 297 MGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKK 376 (538)
Q Consensus 297 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 376 (538)
.|++++|...+.+++......... .....+..++.++...|+ +++|...+.++........
T Consensus 586 ~G~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~la~~~~~~G~----~~~A~~~l~~a~~~~~~~~------------- 646 (903)
T PRK04841 586 WARLDEAEQCARKGLEVLSNYQPQ--QQLQCLAMLAKISLARGD----LDNARRYLNRLENLLGNGR------------- 646 (903)
T ss_pred hcCHHHHHHHHHHhHHhhhccCch--HHHHHHHHHHHHHHHcCC----HHHHHHHHHHHHHHHhccc-------------
Confidence 999999999999998865433221 124566678888888888 9999999988876322100
Q ss_pred HHHHHHHcCCC-chHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCch----hHhHHHHHHHHhCCchhHHHHHHHHHh
Q 009278 377 ELEQQEIFDPK-IADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPR----TYSNRAACYTKLGAMPEGLKDADKCIE 451 (538)
Q Consensus 377 ~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~----~~~~la~~~~~~~~~~~A~~~~~~al~ 451 (538)
.... ...........+...|+.+.|...+.......+.... .+..++.++...|++++|...+++++.
T Consensus 647 -------~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~ 719 (903)
T PRK04841 647 -------YHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNE 719 (903)
T ss_pred -------ccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 0000 0000011223444578888888887765543322221 245788888888999999988888887
Q ss_pred cC------CCchHHHHHHHHHHHHccCHHHHHHHHHHHhccCCCC
Q 009278 452 LD------PTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQN 490 (538)
Q Consensus 452 ~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 490 (538)
.. +....++..+|.++...|+.++|...+.+++++....
T Consensus 720 ~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~ 764 (903)
T PRK04841 720 NARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRT 764 (903)
T ss_pred HHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCcc
Confidence 52 1234567788888889999999999999998876543
No 115
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.51 E-value=3.9e-10 Score=104.18 Aligned_cols=89 Identities=8% Similarity=0.040 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHhccCCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC--chHHHHHHHHHHhhccCHHHHHHHHHh
Q 009278 18 YEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPD--WSKGYSRLGAAHLGLQDYIEAVNSYKK 95 (538)
Q Consensus 18 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~ 95 (538)
|+.--.+|++++-.-.+-+.+|.........+|+...-...|.+++..-|- +..+|-..-......+-.+-++..|++
T Consensus 84 ~~~vn~c~er~lv~mHkmpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrR 163 (835)
T KOG2047|consen 84 YESVNNCFERCLVFMHKMPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRR 163 (835)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHH
Confidence 444455666666655566788888888889999999999999999887763 456676666677777888889999999
Q ss_pred hhhcCCCcHHH
Q 009278 96 GLDIDPNNEAL 106 (538)
Q Consensus 96 al~~~p~~~~~ 106 (538)
-++..|...+-
T Consensus 164 YLk~~P~~~ee 174 (835)
T KOG2047|consen 164 YLKVAPEAREE 174 (835)
T ss_pred HHhcCHHHHHH
Confidence 99998887553
No 116
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.51 E-value=4.3e-11 Score=126.94 Aligned_cols=386 Identities=10% Similarity=-0.010 Sum_probs=252.9
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHhccCCcchHHHHHHHHHHHhcCCHHHHHHHHHHHh-ccCCCchHHHHHHHHHHhh
Q 009278 4 EAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTV-ELKPDWSKGYSRLGAAHLG 82 (538)
Q Consensus 4 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al-~~~p~~~~~~~~la~~~~~ 82 (538)
.+...|..+...|++.+|+..+..+-.. +.-.......+......|++..+...+..+- .....++.....++.++..
T Consensus 343 lh~raa~~~~~~g~~~~Al~~a~~a~d~-~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~ 421 (903)
T PRK04841 343 LHRAAAEAWLAQGFPSEAIHHALAAGDA-QLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQS 421 (903)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHCCCH-HHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHH
Confidence 3456677788899999999877665222 2223556667888888999988777766541 1122345566778888999
Q ss_pred ccCHHHHHHHHHhhhhcCCC-----cHH----HHhhHHHHHHHHhhcccCCCCCCCCcccccccCCchhhcccCCCCCCC
Q 009278 83 LQDYIEAVNSYKKGLDIDPN-----NEA----LKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRS 153 (538)
Q Consensus 83 ~~~~~~A~~~~~~al~~~p~-----~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (538)
.|++++|...+..+....+. ... ....++.++...|+.
T Consensus 422 ~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~--------------------------------- 468 (903)
T PRK04841 422 QHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDP--------------------------------- 468 (903)
T ss_pred CCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCH---------------------------------
Confidence 99999999999988764332 111 111122222222211
Q ss_pred cccHHHHHHHHHhhhcCCCchhhhhchHHHHHHHHHHHhhhcCCCCCCCccccccccCCCCCCCccccccCCCCCCCCCC
Q 009278 154 YLDQDDFRNMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEP 233 (538)
Q Consensus 154 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (538)
..+...+...+...+..
T Consensus 469 ---~~A~~~~~~al~~~~~~------------------------------------------------------------ 485 (903)
T PRK04841 469 ---EEAERLAELALAELPLT------------------------------------------------------------ 485 (903)
T ss_pred ---HHHHHHHHHHHhcCCCc------------------------------------------------------------
Confidence 11111111111111110
Q ss_pred ccccHHHHHHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHhCCHHHHHHHH
Q 009278 234 MELTEEEKEAKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDED------ISYLTNRAAVYLEMGKYEECIKDC 307 (538)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~ 307 (538)
.......+...+|.++...|++++|...+.+++...... ..++..+|.++...|++++|...+
T Consensus 486 -----------~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~ 554 (903)
T PRK04841 486 -----------WYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQ 554 (903)
T ss_pred -----------cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 001133445678899999999999999999998764321 245678899999999999999999
Q ss_pred HHHHHccccchh-hHHHHHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCC
Q 009278 308 DKAVERGRELRS-DFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDP 386 (538)
Q Consensus 308 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 386 (538)
.+++........ .......++..+|.++...|+ +++|...+.+++...... ..+
T Consensus 555 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~----~~~A~~~~~~al~~~~~~---------------------~~~ 609 (903)
T PRK04841 555 EKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWAR----LDEAEQCARKGLEVLSNY---------------------QPQ 609 (903)
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHHHhcC----HHHHHHHHHHhHHhhhcc---------------------Cch
Confidence 999886433211 001112345567888888888 999999999988742210 011
Q ss_pred CchHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCc---hhHh----HHHHHHHHhCCchhHHHHHHHHHhcCCCchH-
Q 009278 387 KIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDP---RTYS----NRAACYTKLGAMPEGLKDADKCIELDPTFSK- 458 (538)
Q Consensus 387 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~---~~~~----~la~~~~~~~~~~~A~~~~~~al~~~p~~~~- 458 (538)
.....+..+|.++...|++++|...+.++..+.+... .... .....+...|+.+.|..++.......+....
T Consensus 610 ~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 689 (903)
T PRK04841 610 QQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHF 689 (903)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchh
Confidence 2345566789999999999999999999977543221 1111 1224455678999999998776653322222
Q ss_pred ---HHHHHHHHHHHccCHHHHHHHHHHHhccC------CCCHHHHHHHHHHHHHhhhhccCCCChHHHHHHHH
Q 009278 459 ---GYTRKGAIQFFLKEYDKALETYQEGLKHD------PQNQELLDGVRRCVQQINKAGRGELSPEELKERQA 522 (538)
Q Consensus 459 ---~~~~l~~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 522 (538)
.+..+|.++...|++++|...+++++... +....++..++.++...|+..+|...+.++.+...
T Consensus 690 ~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~ 762 (903)
T PRK04841 690 LQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLAN 762 (903)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhC
Confidence 24678999999999999999999998863 22345677889999999999999877666665543
No 117
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.50 E-value=2.4e-12 Score=126.69 Aligned_cols=137 Identities=12% Similarity=0.040 Sum_probs=127.5
Q ss_pred HHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcCC
Q 009278 325 ARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQK 404 (538)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 404 (538)
..++..+|.+....+. +++|...++.+++ ..|++..++..++.++.+.++
T Consensus 86 ~~~~~~La~i~~~~g~----~~ea~~~l~~~~~--------------------------~~Pd~~~a~~~~a~~L~~~~~ 135 (694)
T PRK15179 86 ELFQVLVARALEAAHR----SDEGLAVWRGIHQ--------------------------RFPDSSEAFILMLRGVKRQQG 135 (694)
T ss_pred HHHHHHHHHHHHHcCC----cHHHHHHHHHHHh--------------------------hCCCcHHHHHHHHHHHHHhcc
Confidence 6677777777777777 9999999999999 899999999999999999999
Q ss_pred hHHHHHHHHHHHhcCCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCchHHHHHHHHHHHHccCHHHHHHHHHHHh
Q 009278 405 YPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGL 484 (538)
Q Consensus 405 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 484 (538)
+++|+..+++++...|+++..++.+|.++..+|++++|+..|++++..+|+++.++..+|.++...|+.++|...|++++
T Consensus 136 ~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~ 215 (694)
T PRK15179 136 IEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGL 215 (694)
T ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCH
Q 009278 485 KHDPQNQ 491 (538)
Q Consensus 485 ~~~p~~~ 491 (538)
+...+-.
T Consensus 216 ~~~~~~~ 222 (694)
T PRK15179 216 DAIGDGA 222 (694)
T ss_pred HhhCcch
Confidence 9865543
No 118
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.50 E-value=1.3e-11 Score=106.50 Aligned_cols=177 Identities=15% Similarity=0.084 Sum_probs=139.8
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHHHhccCCcchHH---HHHHHHHHHhcCCHHHHHHHHHHHhccCCCch---HHHHH
Q 009278 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVL---YSNRSAAHASLHNYADALADAKKTVELKPDWS---KGYSR 75 (538)
Q Consensus 2 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~ 75 (538)
++.++..|..++..|+|++|+..|++++...|..+.+ .+.+|.++++.+++++|+..+++.++.+|+++ .+++.
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~ 111 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYM 111 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHH
Confidence 3567889999999999999999999999999987644 48999999999999999999999999998764 57888
Q ss_pred HHHHHhhcc---------------C---HHHHHHHHHhhhhcCCCcHHHHh---hHHHHHHHHhhcccCCCCCCCCcccc
Q 009278 76 LGAAHLGLQ---------------D---YIEAVNSYKKGLDIDPNNEALKS---GLADAKAAASASFRSRSPPADNPFGS 134 (538)
Q Consensus 76 la~~~~~~~---------------~---~~~A~~~~~~al~~~p~~~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~ 134 (538)
+|.++...+ + ..+|+..|++.++..|+..-+.. .+..+.
T Consensus 112 ~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~-------------------- 171 (243)
T PRK10866 112 RGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLK-------------------- 171 (243)
T ss_pred HHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHH--------------------
Confidence 888764443 1 24677888888888887643221 111111
Q ss_pred cccCCchhhcccCCCCCCCcccHHHHHHHHHhhhcCCCchhhhhchHHHHHHHHHHHhhhcCCCCCCCccccccccCCCC
Q 009278 135 AFAGPEMWAKLTADPTTRSYLDQDDFRNMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKG 214 (538)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (538)
T Consensus 172 -------------------------------------------------------------------------------- 171 (243)
T PRK10866 172 -------------------------------------------------------------------------------- 171 (243)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccccccCCCCCCCCCCccccHHHHHHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC---HHHHHHHH
Q 009278 215 PETSKEETRKPESEPEPEPMELTEEEKEAKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDED---ISYLTNRA 291 (538)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la 291 (538)
..-+.--+..|..|++.|.|..|+.-++.+++..|+. .+++..++
T Consensus 172 --------------------------------~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~ 219 (243)
T PRK10866 172 --------------------------------DRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLME 219 (243)
T ss_pred --------------------------------HHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHH
Confidence 1223334577999999999999999999999998875 57889999
Q ss_pred HHHHHhCCHHHHHHHHHHH
Q 009278 292 AVYLEMGKYEECIKDCDKA 310 (538)
Q Consensus 292 ~~~~~~~~~~~A~~~~~~~ 310 (538)
..|..+|..++|.......
T Consensus 220 ~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 220 NAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHcCChHHHHHHHHHH
Confidence 9999999999998876544
No 119
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.49 E-value=6.8e-13 Score=105.12 Aligned_cols=111 Identities=19% Similarity=0.259 Sum_probs=104.0
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHHHhccCCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHHHHHhh
Q 009278 3 DEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLG 82 (538)
Q Consensus 3 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 82 (538)
...+..|..++..|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++..+|+++..++.+|.++..
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHHHHhhhhcCCCcHHHHhhHHHH
Q 009278 83 LQDYIEAVNSYKKGLDIDPNNEALKSGLADA 113 (538)
Q Consensus 83 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 113 (538)
.|++++|+..|+++++.+|++.........+
T Consensus 98 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 128 (135)
T TIGR02552 98 LGEPESALKALDLAIEICGENPEYSELKERA 128 (135)
T ss_pred cCCHHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 9999999999999999999998865444433
No 120
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.49 E-value=6.6e-12 Score=123.68 Aligned_cols=168 Identities=10% Similarity=0.001 Sum_probs=143.9
Q ss_pred HHHHHHhcccHHHHHH---HHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHHHHHHHhH
Q 009278 256 AGNAAYKKKEFEKAIE---HYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKG 332 (538)
Q Consensus 256 ~~~~~~~~~~~~~A~~---~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (538)
+-.+....+....+.. -........|+++.++..+|.+....|.+++|...++.+++..|++ ..+...++
T Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~-------~~a~~~~a 127 (694)
T PRK15179 55 ARQVLERHAAVHKPAAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDS-------SEAFILML 127 (694)
T ss_pred HHHHHHHhhhhcchHhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc-------HHHHHHHH
Confidence 3344444444443333 3344445688999999999999999999999999999999999999 66777777
Q ss_pred HHHHHhhhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcCChHHHHHHH
Q 009278 333 TALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHY 412 (538)
Q Consensus 333 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 412 (538)
.++.+.++ +++|+..+++++. .+|+++..++.+|.++...|++++|+.+|
T Consensus 128 ~~L~~~~~----~eeA~~~~~~~l~--------------------------~~p~~~~~~~~~a~~l~~~g~~~~A~~~y 177 (694)
T PRK15179 128 RGVKRQQG----IEAGRAEIELYFS--------------------------GGSSSAREILLEAKSWDEIGQSEQADACF 177 (694)
T ss_pred HHHHHhcc----HHHHHHHHHHHhh--------------------------cCCCCHHHHHHHHHHHHHhcchHHHHHHH
Confidence 77777777 9999999999999 89999999999999999999999999999
Q ss_pred HHHHhcCCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCchHHH
Q 009278 413 TESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGY 460 (538)
Q Consensus 413 ~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 460 (538)
++++..+|+++.++..+|.++...|+.++|...|+++++....-...+
T Consensus 178 ~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~ 225 (694)
T PRK15179 178 ERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKL 225 (694)
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHH
Confidence 999999999999999999999999999999999999999865555543
No 121
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.49 E-value=2.3e-12 Score=113.89 Aligned_cols=189 Identities=18% Similarity=0.187 Sum_probs=141.4
Q ss_pred cHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHHHHHHHhHHHHHHhhhcc
Q 009278 265 EFEKAIEHYSSALELD--DEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCS 342 (538)
Q Consensus 265 ~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (538)
+-+.++..++..+... +.++.+....|.++...|++++|+..+.+. .+ .+.....-.++..+++
T Consensus 81 ~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~-------lE~~al~Vqi~L~~~R-- 146 (290)
T PF04733_consen 81 DKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-----GS-------LELLALAVQILLKMNR-- 146 (290)
T ss_dssp THHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-----TC-------HHHHHHHHHHHHHTT---
T ss_pred chHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-----Cc-------ccHHHHHHHHHHHcCC--
Confidence 3444555554444332 234556677788888899999999888764 22 2333344455666666
Q ss_pred cChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcC--ChHHHHHHHHHHHhcCC
Q 009278 343 KDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQ--KYPEAIQHYTESLRRNP 420 (538)
Q Consensus 343 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~--~~~~A~~~~~~al~~~~ 420 (538)
++.|...++.+.+ .+.+..-.....+++.+..| ++.+|...|+...+..+
T Consensus 147 --~dlA~k~l~~~~~--------------------------~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~ 198 (290)
T PF04733_consen 147 --PDLAEKELKNMQQ--------------------------IDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFG 198 (290)
T ss_dssp --HHHHHHHHHHHHC--------------------------CSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS-
T ss_pred --HHHHHHHHHHHHh--------------------------cCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccC
Confidence 8888888877766 56666666666666776666 59999999999888888
Q ss_pred CCchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCchHHHHHHHHHHHHccCH-HHHHHHHHHHhccCCCCHHHHH
Q 009278 421 KDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEY-DKALETYQEGLKHDPQNQELLD 495 (538)
Q Consensus 421 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~ 495 (538)
.++.+++.++.+++.+|+|++|...+.+++..+|+++.++.+++.+....|+. +.+.+++.+....+|+++.+..
T Consensus 199 ~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~~~ 274 (290)
T PF04733_consen 199 STPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLVKD 274 (290)
T ss_dssp -SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHHHH
Confidence 89999999999999999999999999999999999999999999999999998 6677888888889999887653
No 122
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.49 E-value=9e-10 Score=101.87 Aligned_cols=238 Identities=11% Similarity=0.074 Sum_probs=169.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHh-hCCCC-----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc
Q 009278 241 KEAKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALE-LDDED-----ISYLTNRAAVYLEMGKYEECIKDCDKAVERG 314 (538)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~-~~p~~-----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 314 (538)
..+.++|.....|.....+ ..|+..+-+..|.+++. .+|.- ...|..+|..|...|+.+.|..+|+++.+..
T Consensus 340 VlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~ 417 (835)
T KOG2047|consen 340 VLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVP 417 (835)
T ss_pred HHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCC
Confidence 3455666677777665544 46888999999999886 45543 4679999999999999999999999999865
Q ss_pred ccchhhHHHHHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCChh--------------------------HHHhh
Q 009278 315 RELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPD--------------------------TLKKL 368 (538)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~--------------------------~~~~~ 368 (538)
-.. ...++.+|..-|..-....+ ++.|+...+++......+. .....
T Consensus 418 y~~---v~dLa~vw~~waemElrh~~----~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~ 490 (835)
T KOG2047|consen 418 YKT---VEDLAEVWCAWAEMELRHEN----FEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESL 490 (835)
T ss_pred ccc---hHHHHHHHHHHHHHHHhhhh----HHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHh
Confidence 332 33348888888887777778 9999999999987655422 22445
Q ss_pred hhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC--CCchhHhHHHHHH---HHhCCchhHH
Q 009278 369 NEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNP--KDPRTYSNRAACY---TKLGAMPEGL 443 (538)
Q Consensus 369 ~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~la~~~---~~~~~~~~A~ 443 (538)
|-++.....|++++.+.--.|....+.|..+....-+++|.+.|++.+.+.+ .-.++|...-..+ +.-...+.|.
T Consensus 491 gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraR 570 (835)
T KOG2047|consen 491 GTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERAR 570 (835)
T ss_pred ccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 6667777778888887777888888888888888888888888888887754 3344454332222 2233567888
Q ss_pred HHHHHHHhcCCCc-hH-HHHHHHHHHHHccCHHHHHHHHHHHhccC
Q 009278 444 KDADKCIELDPTF-SK-GYTRKGAIQFFLKEYDKALETYQEGLKHD 487 (538)
Q Consensus 444 ~~~~~al~~~p~~-~~-~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 487 (538)
..|+++++..|.. .. .+...+..-..-|--..|+..|++|-.--
T Consensus 571 dLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v 616 (835)
T KOG2047|consen 571 DLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAV 616 (835)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcC
Confidence 8888888876632 22 34445555556677888888888876543
No 123
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.48 E-value=1.3e-11 Score=104.15 Aligned_cols=174 Identities=20% Similarity=0.236 Sum_probs=133.1
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHHHhccCCcc---hHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCch---HHHHH
Q 009278 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDN---HVLYSNRSAAHASLHNYADALADAKKTVELKPDWS---KGYSR 75 (538)
Q Consensus 2 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~ 75 (538)
++.++..|..++..|+|.+|+..|++++...|.+ +.+.+.+|.+++..|++..|+..+++.+...|+++ .+++.
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~ 84 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYM 84 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHH
Confidence 4789999999999999999999999999998875 58899999999999999999999999999999875 58889
Q ss_pred HHHHHhhcc-----------CHHHHHHHHHhhhhcCCCcHHHHhhHHHHHHHHhhcccCCCCCCCCcccccccCCchhhc
Q 009278 76 LGAAHLGLQ-----------DYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAK 144 (538)
Q Consensus 76 la~~~~~~~-----------~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (538)
+|.+++... ...+|+..|+..+...|+..-+......+.
T Consensus 85 ~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~------------------------------ 134 (203)
T PF13525_consen 85 LGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLA------------------------------ 134 (203)
T ss_dssp HHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHH------------------------------
T ss_pred HHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHH------------------------------
Confidence 999876653 334788888888888887654322111110
Q ss_pred ccCCCCCCCcccHHHHHHHHHhhhcCCCchhhhhchHHHHHHHHHHHhhhcCCCCCCCccccccccCCCCCCCccccccC
Q 009278 145 LTADPTTRSYLDQDDFRNMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRK 224 (538)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (538)
T Consensus 135 -------------------------------------------------------------------------------- 134 (203)
T PF13525_consen 135 -------------------------------------------------------------------------------- 134 (203)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCccccHHHHHHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHhCCHH
Q 009278 225 PESEPEPEPMELTEEEKEAKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDI---SYLTNRAAVYLEMGKYE 301 (538)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~~~~~ 301 (538)
......+..-+.+|..|++.|.|..|+..++.+++..|+.. .++..++.+|..+|..+
T Consensus 135 -------------------~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~ 195 (203)
T PF13525_consen 135 -------------------ELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQ 195 (203)
T ss_dssp -------------------HHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HH
T ss_pred -------------------HHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChH
Confidence 00112344456789999999999999999999999999975 67889999999999988
Q ss_pred HHH
Q 009278 302 ECI 304 (538)
Q Consensus 302 ~A~ 304 (538)
.|.
T Consensus 196 ~a~ 198 (203)
T PF13525_consen 196 AAD 198 (203)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 124
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.47 E-value=6e-12 Score=117.77 Aligned_cols=175 Identities=15% Similarity=0.171 Sum_probs=146.2
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHHHHH
Q 009278 249 KALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARAL 328 (538)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (538)
.+..|..+|.+.....-|++|.++.+.. +..+...+|......++|.++...++..++++|-. ...|
T Consensus 456 d~~lyc~LGDv~~d~s~yEkawElsn~~------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq-------~~~w 522 (777)
T KOG1128|consen 456 DPRLYCLLGDVLHDPSLYEKAWELSNYI------SARAQRSLALLILSNKDFSEADKHLERSLEINPLQ-------LGTW 522 (777)
T ss_pred cchhHHHhhhhccChHHHHHHHHHhhhh------hHHHHHhhccccccchhHHHHHHHHHHHhhcCccc-------hhHH
Confidence 4455556666666666666666655543 45577778888888999999999999999999976 6789
Q ss_pred HHhHHHHHHhhhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcCChHHH
Q 009278 329 TRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEA 408 (538)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 408 (538)
+..|.+..+.++ +..|...|.+++. .+|++..+|.+++..|...|+-.+|
T Consensus 523 f~~G~~ALqlek----~q~av~aF~rcvt--------------------------L~Pd~~eaWnNls~ayi~~~~k~ra 572 (777)
T KOG1128|consen 523 FGLGCAALQLEK----EQAAVKAFHRCVT--------------------------LEPDNAEAWNNLSTAYIRLKKKKRA 572 (777)
T ss_pred HhccHHHHHHhh----hHHHHHHHHHHhh--------------------------cCCCchhhhhhhhHHHHHHhhhHHH
Confidence 999999999999 9999999999999 8999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhcCC--CchHHHHHHHHH
Q 009278 409 IQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDP--TFSKGYTRKGAI 466 (538)
Q Consensus 409 ~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~l~~~ 466 (538)
...+.++++.+-.+..+|-+.-.+....|.+++|++.+.+.+.+.. .++.+...+...
T Consensus 573 ~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~d~~vl~~iv~~ 632 (777)
T KOG1128|consen 573 FRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDDEVLLIIVRT 632 (777)
T ss_pred HHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcccchhhHHHHHH
Confidence 9999999999999999999999999999999999999999987742 234444444433
No 125
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.46 E-value=1.3e-12 Score=120.14 Aligned_cols=116 Identities=30% Similarity=0.573 Sum_probs=110.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCchHHHHHHHHHHHHcc
Q 009278 392 EREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLK 471 (538)
Q Consensus 392 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 471 (538)
+...|..++..|+|++|+..|.+++..+|+++.+++.+|.++..+|++++|+..+++++.++|+++.+++.+|.++..+|
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 45568889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhh
Q 009278 472 EYDKALETYQEGLKHDPQNQELLDGVRRCVQQINKA 507 (538)
Q Consensus 472 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 507 (538)
++++|+..|++++.++|+++.+...++.|...+...
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~~~ 120 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLIKECDEKIAEE 120 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999998888543
No 126
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.43 E-value=3.1e-11 Score=108.32 Aligned_cols=117 Identities=21% Similarity=0.187 Sum_probs=112.2
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHHHhccCCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHHHHHhh
Q 009278 3 DEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLG 82 (538)
Q Consensus 3 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 82 (538)
.+.+..+...+..|++++|...++..+...|+|+..+...+.+++..|+.++|.+.+++++.++|+.+..++.+|..+++
T Consensus 307 aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~ 386 (484)
T COG4783 307 AAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLK 386 (484)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHHHHhhhhcCCCcHHHHhhHHHHHHHHhh
Q 009278 83 LQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASA 119 (538)
Q Consensus 83 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 119 (538)
.|++.+|+..++..+..+|+++..|..|++.+...|.
T Consensus 387 ~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~ 423 (484)
T COG4783 387 GGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGN 423 (484)
T ss_pred cCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCc
Confidence 9999999999999999999999999999999888865
No 127
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=99.43 E-value=1.2e-13 Score=117.20 Aligned_cols=110 Identities=33% Similarity=0.466 Sum_probs=104.2
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHhccCCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHHHHHhhc
Q 009278 4 EAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGL 83 (538)
Q Consensus 4 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 83 (538)
.+.++|+.||.+|.|++||.+|.+++..+|.++..+.++|.+|++++.+..|...|+.++.++.....+|.++|.+-..+
T Consensus 99 EiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~L 178 (536)
T KOG4648|consen 99 EIKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESL 178 (536)
T ss_pred HHHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHhhhhcCCCcHHHHhhHHHH
Q 009278 84 QDYIEAVNSYKKGLDIDPNNEALKSGLADA 113 (538)
Q Consensus 84 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 113 (538)
|...+|.+.++.++.+.|++.+....++.+
T Consensus 179 g~~~EAKkD~E~vL~LEP~~~ELkK~~a~i 208 (536)
T KOG4648|consen 179 GNNMEAKKDCETVLALEPKNIELKKSLARI 208 (536)
T ss_pred hhHHHHHHhHHHHHhhCcccHHHHHHHHHh
Confidence 999999999999999999988877666554
No 128
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.37 E-value=9.8e-12 Score=96.21 Aligned_cols=107 Identities=20% Similarity=0.181 Sum_probs=99.0
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHHHhccCCcc---hHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCc---hHHHHH
Q 009278 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDN---HVLYSNRSAAHASLHNYADALADAKKTVELKPDW---SKGYSR 75 (538)
Q Consensus 2 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~ 75 (538)
++.++..|..++..|++++|+..|.+++..+|++ +.+++.+|.++...|++++|+..|++++..+|++ +.+++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 4678999999999999999999999999998876 5789999999999999999999999999998885 678999
Q ss_pred HHHHHhhccCHHHHHHHHHhhhhcCCCcHHHHh
Q 009278 76 LGAAHLGLQDYIEAVNSYKKGLDIDPNNEALKS 108 (538)
Q Consensus 76 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 108 (538)
+|.++...|++++|+..+.+++...|++..+..
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence 999999999999999999999999999876543
No 129
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.37 E-value=2e-10 Score=99.23 Aligned_cols=186 Identities=12% Similarity=0.103 Sum_probs=127.6
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHH---HHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHH
Q 009278 249 KALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISY---LTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIA 325 (538)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 325 (538)
.+..++..|..++..|+|++|+..|++++...|..+.+ .+.+|.++.+.+++++|+..+++.++.+|+++.. .
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~----~ 106 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI----D 106 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCch----H
Confidence 45668889999999999999999999999999998755 4899999999999999999999999999998766 5
Q ss_pred HHHHHhHHHHHHhhhc--------------ccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHH
Q 009278 326 RALTRKGTALVKMAKC--------------SKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADE 391 (538)
Q Consensus 326 ~~~~~~~~~~~~~~~~--------------~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 391 (538)
.+++.+|.++...+.. .....+|+..|++.+...|+......... .+ ..+......-
T Consensus 107 ~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~------rl---~~l~~~la~~ 177 (243)
T PRK10866 107 YVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATK------RL---VFLKDRLAKY 177 (243)
T ss_pred HHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHH------HH---HHHHHHHHHH
Confidence 7778888765443310 01134567777777777766442111110 00 0011111222
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCC---chhHhHHHHHHHHhCCchhHHHHHH
Q 009278 392 EREKGNEFFKQQKYPEAIQHYTESLRRNPKD---PRTYSNRAACYTKLGAMPEGLKDAD 447 (538)
Q Consensus 392 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~ 447 (538)
-+..|..|.+.|.|..|+.-++.+++..|+. .+++..++..|..+|..++|.....
T Consensus 178 e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~ 236 (243)
T PRK10866 178 ELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAK 236 (243)
T ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 3355666677777777777777777666654 3566666666666676666665544
No 130
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=1.1e-11 Score=109.08 Aligned_cols=119 Identities=29% Similarity=0.442 Sum_probs=107.9
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHHHhccCCcc---------------hHHHHHHHHHHHhcCCHHHHHHHHHHHhccC
Q 009278 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDN---------------HVLYSNRSAAHASLHNYADALADAKKTVELK 66 (538)
Q Consensus 2 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 66 (538)
|......|+.+|+.|+|..|...|++++..-+.. ..++.+++.|+.++++|..|+..++++|.++
T Consensus 208 A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~ 287 (397)
T KOG0543|consen 208 ADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD 287 (397)
T ss_pred HHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC
Confidence 4556789999999999999999999998753311 3678999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHhhccCHHHHHHHHHhhhhcCCCcHHHHhhHHHHHHHHhhc
Q 009278 67 PDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASAS 120 (538)
Q Consensus 67 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 120 (538)
|+|..++++.|.++..+|+++.|+..|+++++++|+|..+...+..+..+....
T Consensus 288 ~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~ 341 (397)
T KOG0543|consen 288 PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREY 341 (397)
T ss_pred CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998888777554
No 131
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.36 E-value=2e-10 Score=97.03 Aligned_cols=182 Identities=20% Similarity=0.277 Sum_probs=119.1
Q ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHH
Q 009278 248 EKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDED---ISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMI 324 (538)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 324 (538)
..+..++..|..++..|+|.+|+..|++++...|.+ ..+.+.+|.++...|+++.|+..+++.++..|+++..
T Consensus 3 ~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~---- 78 (203)
T PF13525_consen 3 DTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKA---- 78 (203)
T ss_dssp --HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTH----
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch----
Confidence 357789999999999999999999999999998876 5789999999999999999999999999999998754
Q ss_pred HHHHHHhHHHHHHhhh-------cccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHH
Q 009278 325 ARALTRKGTALVKMAK-------CSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGN 397 (538)
Q Consensus 325 ~~~~~~~~~~~~~~~~-------~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~ 397 (538)
..+++.+|.++..... ..+...+|+..|+..+...|++........ .+.. +......--+.+|.
T Consensus 79 ~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~------~l~~---l~~~la~~e~~ia~ 149 (203)
T PF13525_consen 79 DYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKK------RLAE---LRNRLAEHELYIAR 149 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHH------HHHH---HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHH------HHHH---HHHHHHHHHHHHHH
Confidence 5677777777655532 112245677777777776666432111110 0000 00111222344666
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCc---hhHhHHHHHHHHhCCchhH
Q 009278 398 EFFKQQKYPEAIQHYTESLRRNPKDP---RTYSNRAACYTKLGAMPEG 442 (538)
Q Consensus 398 ~~~~~~~~~~A~~~~~~al~~~~~~~---~~~~~la~~~~~~~~~~~A 442 (538)
.|.+.|.|..|+..++.+++..|+.+ .++..++.+|..+|..+.|
T Consensus 150 ~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 150 FYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 77777777777777777777777653 4566666667777666533
No 132
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=9.5e-11 Score=99.63 Aligned_cols=132 Identities=17% Similarity=0.177 Sum_probs=115.5
Q ss_pred HHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHhHHHHHHHHhCC---chhHHHHHH
Q 009278 371 AEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGA---MPEGLKDAD 447 (538)
Q Consensus 371 ~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~---~~~A~~~~~ 447 (538)
.+..+.-++..+..+|++++-|..+|.+|+..|+++.|...|.+++++.|++++.+..+|.+++...+ ..++...++
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~ 217 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLR 217 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 34445556666669999999999999999999999999999999999999999999999999877653 678999999
Q ss_pred HHHhcCCCchHHHHHHHHHHHHccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Q 009278 448 KCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDGVRRCVQ 502 (538)
Q Consensus 448 ~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 502 (538)
+++..+|.++.+.+.+|..++..|++.+|...++..+...|.+..-...+-....
T Consensus 218 ~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~~ia 272 (287)
T COG4235 218 QALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIERSIA 272 (287)
T ss_pred HHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Confidence 9999999999999999999999999999999999999998877555544444433
No 133
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.34 E-value=2.4e-11 Score=93.97 Aligned_cols=108 Identities=19% Similarity=0.210 Sum_probs=98.9
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC---chhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCc---hHHHHH
Q 009278 389 ADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKD---PRTYSNRAACYTKLGAMPEGLKDADKCIELDPTF---SKGYTR 462 (538)
Q Consensus 389 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~ 462 (538)
++.++.+|..+...|++++|+..|.+++...|++ +.+++.+|.++...|++++|+.+|++++..+|++ +.+++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 4578899999999999999999999999999876 4688999999999999999999999999998875 678999
Q ss_pred HHHHHHHccCHHHHHHHHHHHhccCCCCHHHHHH
Q 009278 463 KGAIQFFLKEYDKALETYQEGLKHDPQNQELLDG 496 (538)
Q Consensus 463 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 496 (538)
+|.++...|++++|..++++++...|+++.+...
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 115 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRYPGSSAAKLA 115 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHCcCChhHHHH
Confidence 9999999999999999999999999999876544
No 134
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.33 E-value=4.3e-12 Score=86.73 Aligned_cols=66 Identities=36% Similarity=0.573 Sum_probs=42.4
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHHHhccCCcchHHHHHHHHHHHhcC-CHHHHHHHHHHHhccCC
Q 009278 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLH-NYADALADAKKTVELKP 67 (538)
Q Consensus 2 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p 67 (538)
|+.|+.+|..++..|+|++|+..|+++++.+|+++.+++++|.++..+| ++++|+..++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 4556666666666666666666666666666666666666666666666 56666666666666655
No 135
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.33 E-value=2e-11 Score=95.73 Aligned_cols=115 Identities=36% Similarity=0.592 Sum_probs=105.0
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHHHhccCCcc-----hHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHH
Q 009278 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDN-----HVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRL 76 (538)
Q Consensus 2 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 76 (538)
++.+...|+.+|..|+|++|...|..||...|.. ..+|.+.|.+.++++.++.|+..+.+++.++|.+..++.++
T Consensus 95 ad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RR 174 (271)
T KOG4234|consen 95 ADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERR 174 (271)
T ss_pred HHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHH
Confidence 4567889999999999999999999999999874 36788999999999999999999999999999999999999
Q ss_pred HHHHhhccCHHHHHHHHHhhhhcCCCcHHHHhhHHHHHHH
Q 009278 77 GAAHLGLQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAA 116 (538)
Q Consensus 77 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 116 (538)
|.+|.++..|++|+..|+++++.+|....+....+.+--.
T Consensus 175 Aeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~ 214 (271)
T KOG4234|consen 175 AEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLPPK 214 (271)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHH
Confidence 9999999999999999999999999998887776655433
No 136
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=99.32 E-value=9.5e-12 Score=105.90 Aligned_cols=239 Identities=18% Similarity=0.192 Sum_probs=183.3
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHHHHHHHhH
Q 009278 253 EKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKG 332 (538)
Q Consensus 253 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (538)
....|..|+++|.|++|+.||.+++..+|.++..+.++|..|++...|..|...+..++.++... ..+|.+.+
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y-------~KAYSRR~ 172 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLY-------VKAYSRRM 172 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHH-------HHHHHHHH
Confidence 67789999999999999999999999999999999999999999999999999999999987665 56777777
Q ss_pred HHHHHhhhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHH---------HHHHHHHHhcC
Q 009278 333 TALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEE---------REKGNEFFKQQ 403 (538)
Q Consensus 333 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---------~~la~~~~~~~ 403 (538)
..-..+|. ..+|.+.++.++.+.|...-+...-.--..+..-+-+.+..|....+. ..-|..+...|
T Consensus 173 ~AR~~Lg~----~~EAKkD~E~vL~LEP~~~ELkK~~a~i~Sl~E~~I~~KsT~G~~~A~Q~~~Q~l~~K~~G~~Fsk~~ 248 (536)
T KOG4648|consen 173 QARESLGN----NMEAKKDCETVLALEPKNIELKKSLARINSLRERKIATKSTPGFTPARQGMIQILPIKKPGYKFSKKA 248 (536)
T ss_pred HHHHHHhh----HHHHHHhHHHHHhhCcccHHHHHHHHHhcchHhhhHHhhcCCCCCccccchhhhccccCcchhhhhhh
Confidence 77777777 999999999999999885433222111111111111222222322222 22366677888
Q ss_pred ChHHHHHHHHHHHhcCCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCchHHHHHHHHHHHHccCHHHHHHHHHHH
Q 009278 404 KYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEG 483 (538)
Q Consensus 404 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 483 (538)
.++.++.++.+-+.....+..+..+ +..|.+.-+++.++....+++..+|.........|.+-.-.|...++...++.+
T Consensus 249 ~~~~~i~~~~~~~A~~~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~s~~~~~s~~~~A~T~~~~~~E~K~~~~T~ 327 (536)
T KOG4648|consen 249 MRSVPVVDVVSPRATIDDSNQLRIS-DEDIDKIFNSNCGIIEEVKKTNPKPTPMPDTSGPPKAETIAKTSKEVKPTKQTA 327 (536)
T ss_pred ccccceeEeeccccccCccccCccc-HHHHHHHhhcchhHHHHHHhcCCCCCcCcccCCCchhHHHHhhhhhcCcchhhe
Confidence 8888888887777666555555444 777888899999999999999998887777777777777788999999999999
Q ss_pred hccCCCCHHHHHHHHHHHHH
Q 009278 484 LKHDPQNQELLDGVRRCVQQ 503 (538)
Q Consensus 484 l~~~p~~~~~~~~l~~~~~~ 503 (538)
+.+.|.+......+.+.-.+
T Consensus 328 ~~~~P~~~~~~~~~sr~~~~ 347 (536)
T KOG4648|consen 328 VKVAPAVETPKETETRKDTK 347 (536)
T ss_pred eeeccccccchhhhhhhccc
Confidence 99999988777666655433
No 137
>PRK15331 chaperone protein SicA; Provisional
Probab=99.31 E-value=4.4e-11 Score=92.48 Aligned_cols=114 Identities=13% Similarity=0.026 Sum_probs=102.7
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHHHhccCCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHHHHHhh
Q 009278 3 DEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLG 82 (538)
Q Consensus 3 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 82 (538)
+..+..|..++++|++++|...|+-....+|.+++.+.+||.|+..+|+|++|+..|..+..++++++...+..|.|++.
T Consensus 38 e~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~ 117 (165)
T PRK15331 38 DGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLL 117 (165)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHH
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHHHHhhhhcCCCcHHHHhhHHHHHHHH
Q 009278 83 LQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAA 117 (538)
Q Consensus 83 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 117 (538)
+|+...|+.+|+.++. .|.+......-...+..+
T Consensus 118 l~~~~~A~~~f~~a~~-~~~~~~l~~~A~~~L~~l 151 (165)
T PRK15331 118 MRKAAKARQCFELVNE-RTEDESLRAKALVYLEAL 151 (165)
T ss_pred hCCHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHH
Confidence 9999999999999998 577666554444443333
No 138
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.31 E-value=5.1e-10 Score=100.67 Aligned_cols=133 Identities=21% Similarity=0.185 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHhHHHHHHHHhCCchhHHHHHHHHHh
Q 009278 372 EKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIE 451 (538)
Q Consensus 372 ~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 451 (538)
+.|+..+...+...|+++..+...+.+++..++..+|.+.+++++...|..+.++.++|.+++..|++.+|+..++..+.
T Consensus 323 d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~ 402 (484)
T COG4783 323 DEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLF 402 (484)
T ss_pred chHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhh
Confidence 33334444444467777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred cCCCchHHHHHHHHHHHHccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHh
Q 009278 452 LDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDGVRRCVQQI 504 (538)
Q Consensus 452 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 504 (538)
.+|+++..|..+|..|..+|+..+|...+.....+...-..+...+..+..+.
T Consensus 403 ~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 403 NDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRASQQV 455 (484)
T ss_pred cCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 77777777777777777777777777776666666665555555555544443
No 139
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.30 E-value=6.3e-10 Score=93.22 Aligned_cols=208 Identities=20% Similarity=0.224 Sum_probs=160.1
Q ss_pred HHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHHHHHHHhHHHHHHhh
Q 009278 260 AYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMA 339 (538)
Q Consensus 260 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (538)
+++..+|.+|++++..-.+.+|.+...+..+|.||+...+|..|..+|++.-...|.........+..++..+
T Consensus 20 lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~------- 92 (459)
T KOG4340|consen 20 LIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKAC------- 92 (459)
T ss_pred HHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhc-------
Confidence 4778899999999999999999999999999999999999999999999999999987444333344444444
Q ss_pred hcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHH-------HHHHHcCC--CchHHHHHHHHHHHhcCChHHHHH
Q 009278 340 KCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKEL-------EQQEIFDP--KIADEEREKGNEFFKQQKYPEAIQ 410 (538)
Q Consensus 340 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~-------~~~~~~~~--~~~~~~~~la~~~~~~~~~~~A~~ 410 (538)
. +.+|+......... +......-+++.|+.+- +..++.-| +.++...+.|.+.++.|+++.|++
T Consensus 93 i----~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvq 165 (459)
T KOG4340|consen 93 I----YADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQ 165 (459)
T ss_pred c----cHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHH
Confidence 4 88888776655442 22333333333333321 12222334 678888999999999999999999
Q ss_pred HHHHHHhcCCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhc----CCCc-------------------------hHHHH
Q 009278 411 HYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIEL----DPTF-------------------------SKGYT 461 (538)
Q Consensus 411 ~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~----~p~~-------------------------~~~~~ 461 (538)
-|+.+++...-++.+-++++.++++.|+++.|+++...+++. +|+. ..++.
T Consensus 166 kFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfN 245 (459)
T KOG4340|consen 166 KFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFN 245 (459)
T ss_pred HHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhh
Confidence 999999999989999999999999999999999998887754 3431 23456
Q ss_pred HHHHHHHHccCHHHHHHHHH
Q 009278 462 RKGAIQFFLKEYDKALETYQ 481 (538)
Q Consensus 462 ~l~~~~~~~g~~~~A~~~~~ 481 (538)
..+-++++.|+++.|.+.+.
T Consensus 246 LKaAIeyq~~n~eAA~eaLt 265 (459)
T KOG4340|consen 246 LKAAIEYQLRNYEAAQEALT 265 (459)
T ss_pred hhhhhhhhcccHHHHHHHhh
Confidence 67788999999998887653
No 140
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.30 E-value=6.8e-12 Score=89.32 Aligned_cols=82 Identities=24% Similarity=0.376 Sum_probs=74.3
Q ss_pred hcCCHHHHHHHHHHHhccCCc--chHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHHHHHhhccCHHHHHH
Q 009278 14 SSGDYEAAVRHFTEAISLSPD--NHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVN 91 (538)
Q Consensus 14 ~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~ 91 (538)
.+|+|+.|+..|+++++.+|. +...++.+|.|+++.|+|++|+..+++ ...+|.++...+.+|.|+..+|++++|+.
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 368999999999999999995 567888899999999999999999999 88999999999999999999999999999
Q ss_pred HHHhh
Q 009278 92 SYKKG 96 (538)
Q Consensus 92 ~~~~a 96 (538)
.|+++
T Consensus 80 ~l~~~ 84 (84)
T PF12895_consen 80 ALEKA 84 (84)
T ss_dssp HHHHH
T ss_pred HHhcC
Confidence 99875
No 141
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.30 E-value=7.6e-10 Score=98.98 Aligned_cols=225 Identities=16% Similarity=0.178 Sum_probs=150.3
Q ss_pred ccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHHHHHHHhHHHHHHhhhccc
Q 009278 264 KEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSK 343 (538)
Q Consensus 264 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (538)
.++++|...|.++ |.+|...|++++|..+|.++....... ......+..+...+.++... +
T Consensus 29 ~~~e~Aa~~y~~A--------------a~~fk~~~~~~~A~~ay~kAa~~~~~~-~~~~~Aa~~~~~Aa~~~k~~-~--- 89 (282)
T PF14938_consen 29 PDYEEAADLYEKA--------------ANCFKLAKDWEKAAEAYEKAADCYEKL-GDKFEAAKAYEEAANCYKKG-D--- 89 (282)
T ss_dssp HHHHHHHHHHHHH--------------HHHHHHTT-CHHHHHHHHHHHHHHHHT-T-HHHHHHHHHHHHHHHHHT-T---
T ss_pred CCHHHHHHHHHHH--------------HHHHHHHhccchhHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhh-C---
Confidence 3677777666664 677777888888888888887655432 22233366677767666555 6
Q ss_pred ChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhc-CChHHHHHHHHHHHhcCCCC
Q 009278 344 DYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQ-QKYPEAIQHYTESLRRNPKD 422 (538)
Q Consensus 344 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~al~~~~~~ 422 (538)
+++|+.+|++++. .+...|++..+ ...+..+|.+|... |++++|+++|+++++.....
T Consensus 90 -~~~Ai~~~~~A~~------~y~~~G~~~~a--------------A~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e 148 (282)
T PF14938_consen 90 -PDEAIECYEKAIE------IYREAGRFSQA--------------AKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQE 148 (282)
T ss_dssp -HHHHHHHHHHHHH------HHHHCT-HHHH--------------HHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHT
T ss_pred -HHHHHHHHHHHHH------HHHhcCcHHHH--------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC
Confidence 8899999999987 44555555444 44566789999998 99999999999999874322
Q ss_pred ------chhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCc-------hHHHHHHHHHHHHccCHHHHHHHHHHHhccCCC
Q 009278 423 ------PRTYSNRAACYTKLGAMPEGLKDADKCIELDPTF-------SKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQ 489 (538)
Q Consensus 423 ------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 489 (538)
...+..+|.++..+|+|++|+..|+++....-++ ...++..+.|++..||...|...+++....+|.
T Consensus 149 ~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~ 228 (282)
T PF14938_consen 149 GSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPS 228 (282)
T ss_dssp T-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTT
T ss_pred CChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 3567889999999999999999999998763221 134567888999999999999999999999885
Q ss_pred CHHH--HHHHHHHHHHhhhhccCCCChHHHHHHHHhccC-Cchh
Q 009278 490 NQEL--LDGVRRCVQQINKAGRGELSPEELKERQAKGMQ-DPKF 530 (538)
Q Consensus 490 ~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~p~~ 530 (538)
.... ...+..+.......+ ...|+.+...+..... ||-.
T Consensus 229 F~~s~E~~~~~~l~~A~~~~D--~e~f~~av~~~d~~~~ld~w~ 270 (282)
T PF14938_consen 229 FASSREYKFLEDLLEAYEEGD--VEAFTEAVAEYDSISRLDNWK 270 (282)
T ss_dssp STTSHHHHHHHHHHHHHHTT---CCCHHHHCHHHTTSS---HHH
T ss_pred CCCcHHHHHHHHHHHHHHhCC--HHHHHHHHHHHcccCccHHHH
Confidence 4222 223333333333322 2345555666666555 5543
No 142
>PRK15331 chaperone protein SicA; Provisional
Probab=99.29 E-value=7.3e-11 Score=91.27 Aligned_cols=122 Identities=12% Similarity=0.077 Sum_probs=109.3
Q ss_pred cCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCchHHHHHH
Q 009278 384 FDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRK 463 (538)
Q Consensus 384 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 463 (538)
+.++..+..+..|.-++..|++++|...|+-..-.+|.++..|..||.|+..+++|++|+..|..+..+++++|...+..
T Consensus 32 is~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~a 111 (165)
T PRK15331 32 IPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFT 111 (165)
T ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchH
Confidence 56667778889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhh
Q 009278 464 GAIQFFLKEYDKALETYQEGLKHDPQNQELLDGVRRCVQQINK 506 (538)
Q Consensus 464 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 506 (538)
|.|+..+|+...|..+|..++. .|.+..+...-...+..+..
T Consensus 112 gqC~l~l~~~~~A~~~f~~a~~-~~~~~~l~~~A~~~L~~l~~ 153 (165)
T PRK15331 112 GQCQLLMRKAAKARQCFELVNE-RTEDESLRAKALVYLEALKT 153 (165)
T ss_pred HHHHHHhCCHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHHc
Confidence 9999999999999999999998 67777766555555544443
No 143
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=99.29 E-value=2.7e-07 Score=89.41 Aligned_cols=109 Identities=17% Similarity=0.094 Sum_probs=99.2
Q ss_pred HHhhcCCHHHHHHHHHHHhccCCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHHHHHhhccCHHHHH
Q 009278 11 AAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAV 90 (538)
Q Consensus 11 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~ 90 (538)
-....++|.+|+....+.++..|+.+-+....|.++.++|+.++|..+++..-...+++...+-.+-.||..+|++++|.
T Consensus 18 d~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~ 97 (932)
T KOG2053|consen 18 DLLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAV 97 (932)
T ss_pred HHhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHH
Confidence 45678999999999999999999999999999999999999999998888887888888899999999999999999999
Q ss_pred HHHHhhhhcCCCcHHHHhhHHHHHHHHhhc
Q 009278 91 NSYKKGLDIDPNNEALKSGLADAKAAASAS 120 (538)
Q Consensus 91 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 120 (538)
.+|++++..+|+ .+....+-.++.+.+.+
T Consensus 98 ~~Ye~~~~~~P~-eell~~lFmayvR~~~y 126 (932)
T KOG2053|consen 98 HLYERANQKYPS-EELLYHLFMAYVREKSY 126 (932)
T ss_pred HHHHHHHhhCCc-HHHHHHHHHHHHHHHHH
Confidence 999999999999 77777777777776655
No 144
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=5.5e-11 Score=104.66 Aligned_cols=120 Identities=31% Similarity=0.455 Sum_probs=108.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCC---------------chhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCc
Q 009278 392 EREKGNEFFKQQKYPEAIQHYTESLRRNPKD---------------PRTYSNRAACYTKLGAMPEGLKDADKCIELDPTF 456 (538)
Q Consensus 392 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 456 (538)
....|..+++.|+|..|...|++++..-+.. ..++.+++.|+.++++|.+|+..+.++|.++|+|
T Consensus 211 ~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N 290 (397)
T KOG0543|consen 211 KKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNN 290 (397)
T ss_pred HHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCc
Confidence 4567899999999999999999988653311 2578999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhccCC
Q 009278 457 SKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDGVRRCVQQINKAGRGE 511 (538)
Q Consensus 457 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~ 511 (538)
+.+++..|.++..+|+++.|+..|++++++.|+|..+...|..+..+..++.+..
T Consensus 291 ~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~ke 345 (397)
T KOG0543|consen 291 VKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKE 345 (397)
T ss_pred hhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998888776654
No 145
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.29 E-value=4.1e-11 Score=89.04 Aligned_cols=99 Identities=40% Similarity=0.632 Sum_probs=95.2
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHhccCCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHHHHHhhc
Q 009278 4 EAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGL 83 (538)
Q Consensus 4 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 83 (538)
.++.+|..++..|++++|+..|++++...|.++.++..+|.++...|++++|+..+++++...|.+..++..+|.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHhhhhcCCC
Q 009278 84 QDYIEAVNSYKKGLDIDPN 102 (538)
Q Consensus 84 ~~~~~A~~~~~~al~~~p~ 102 (538)
|++++|...+.++++..|+
T Consensus 82 ~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 82 GKYEEALEAYEKALELDPN 100 (100)
T ss_pred HhHHHHHHHHHHHHccCCC
Confidence 9999999999999988774
No 146
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=2.7e-10 Score=96.88 Aligned_cols=127 Identities=22% Similarity=0.253 Sum_probs=112.7
Q ss_pred HHHHHHHHHHHhccCCCchHHHHHHHHHHhhccCHHHHHHHHHhhhhcCCCcHHHHhhHHHHHHHHhhcccCCCCCCCCc
Q 009278 52 YADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNP 131 (538)
Q Consensus 52 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 131 (538)
.+.-+.-++..+..+|++++.|..||.+|+.+|++..|...|.+++++.|++++.+..++.++.....
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~------------ 205 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAG------------ 205 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC------------
Confidence 55567778888899999999999999999999999999999999999999999999888877655421
Q ss_pred ccccccCCchhhcccCCCCCCCcccHHHHHHHHHhhhcCCCchhhhhchHHHHHHHHHHHhhhcCCCCCCCccccccccC
Q 009278 132 FGSAFAGPEMWAKLTADPTTRSYLDQDDFRNMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDA 211 (538)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (538)
T Consensus 206 -------------------------------------------------------------------------------- 205 (287)
T COG4235 206 -------------------------------------------------------------------------------- 205 (287)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCccccccCCCCCCCCCCccccHHHHHHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 009278 212 PKGPETSKEETRKPESEPEPEPMELTEEEKEAKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRA 291 (538)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 291 (538)
.....++...+++++..+|.++.+.+.+|
T Consensus 206 ---------------------------------------------------~~~ta~a~~ll~~al~~D~~~iral~lLA 234 (287)
T COG4235 206 ---------------------------------------------------QQMTAKARALLRQALALDPANIRALSLLA 234 (287)
T ss_pred ---------------------------------------------------CcccHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 23456889999999999999999999999
Q ss_pred HHHHHhCCHHHHHHHHHHHHHccccchhhH
Q 009278 292 AVYLEMGKYEECIKDCDKAVERGRELRSDF 321 (538)
Q Consensus 292 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 321 (538)
..++..|+|.+|+..++..++..|.+.+..
T Consensus 235 ~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr 264 (287)
T COG4235 235 FAAFEQGDYAEAAAAWQMLLDLLPADDPRR 264 (287)
T ss_pred HHHHHcccHHHHHHHHHHHHhcCCCCCchH
Confidence 999999999999999999999998875544
No 147
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.27 E-value=1.7e-11 Score=83.79 Aligned_cols=67 Identities=31% Similarity=0.519 Sum_probs=65.2
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHHHHHhhcc-CHHHHHHHHHhhhhcCC
Q 009278 35 NHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQ-DYIEAVNSYKKGLDIDP 101 (538)
Q Consensus 35 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~~~p 101 (538)
++.+|..+|.+++..|++++|+..|+++++++|+++.+++.+|.++..+| ++++|+..++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 57899999999999999999999999999999999999999999999999 79999999999999988
No 148
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.27 E-value=9.3e-11 Score=96.61 Aligned_cols=106 Identities=23% Similarity=0.311 Sum_probs=96.6
Q ss_pred CCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC---chhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCchHHHH
Q 009278 385 DPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKD---PRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYT 461 (538)
Q Consensus 385 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 461 (538)
.+.....++.+|..+...|++++|+.+|++++...|+. ..++..+|.++...|++++|+..+++++...|+++..+.
T Consensus 31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 110 (172)
T PRK02603 31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALN 110 (172)
T ss_pred HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHH
Confidence 34667788999999999999999999999999887754 468999999999999999999999999999999999999
Q ss_pred HHHHHHHHccC--------------HHHHHHHHHHHhccCCCC
Q 009278 462 RKGAIQFFLKE--------------YDKALETYQEGLKHDPQN 490 (538)
Q Consensus 462 ~l~~~~~~~g~--------------~~~A~~~~~~al~~~p~~ 490 (538)
.+|.++...|+ +.+|.+++++++..+|++
T Consensus 111 ~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 99999999887 678899999999999987
No 149
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.26 E-value=2.7e-11 Score=81.48 Aligned_cols=64 Identities=30% Similarity=0.445 Sum_probs=44.7
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHhccCCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCch
Q 009278 7 AKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWS 70 (538)
Q Consensus 7 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 70 (538)
.+|..++..|+|++|+..|++++..+|+++.+++.+|.++..+|++++|+..|+++++.+|+++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 4667777777777777777777777777777777777777777777777777777777777654
No 150
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.25 E-value=2.4e-10 Score=93.92 Aligned_cols=104 Identities=19% Similarity=0.199 Sum_probs=91.3
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC---chhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCchHHHHHHH
Q 009278 388 IADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKD---PRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKG 464 (538)
Q Consensus 388 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 464 (538)
....++.+|.++...|++++|+..|++++.+.|+. +.++.++|.++...|++++|+.++++++.++|.....+..+|
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la 113 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 46778999999999999999999999999887753 458999999999999999999999999999999999999999
Q ss_pred HHHH-------HccCHH-------HHHHHHHHHhccCCCCH
Q 009278 465 AIQF-------FLKEYD-------KALETYQEGLKHDPQNQ 491 (538)
Q Consensus 465 ~~~~-------~~g~~~-------~A~~~~~~al~~~p~~~ 491 (538)
.++. ..|+++ +|+.+|++++..+|++.
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 9998 777766 66667777788888764
No 151
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.24 E-value=1.7e-10 Score=95.07 Aligned_cols=102 Identities=23% Similarity=0.304 Sum_probs=94.0
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHHHhccCCcc---hHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHHH
Q 009278 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDN---HVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGA 78 (538)
Q Consensus 2 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 78 (538)
+..++.+|..+...|++++|+.+|++++...|+. +.++..+|.++...|++++|+..+++++...|++..++..+|.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 4678999999999999999999999999887653 5789999999999999999999999999999999999999999
Q ss_pred HHhhccC--------------HHHHHHHHHhhhhcCCCc
Q 009278 79 AHLGLQD--------------YIEAVNSYKKGLDIDPNN 103 (538)
Q Consensus 79 ~~~~~~~--------------~~~A~~~~~~al~~~p~~ 103 (538)
++...|+ +++|+.++++++..+|++
T Consensus 115 ~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 115 IYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 9999887 678899999999999987
No 152
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.23 E-value=1.3e-10 Score=86.27 Aligned_cols=99 Identities=37% Similarity=0.640 Sum_probs=93.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCchHHHHHHHHHHHHc
Q 009278 391 EEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFL 470 (538)
Q Consensus 391 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 470 (538)
+++.+|.++...|++++|+..++++++..|.++.++..+|.++...|++++|+.++++++...|.+..++..+|.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 46788999999999999999999999999999899999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHhccCCC
Q 009278 471 KEYDKALETYQEGLKHDPQ 489 (538)
Q Consensus 471 g~~~~A~~~~~~al~~~p~ 489 (538)
|++++|...+.+++...|+
T Consensus 82 ~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 82 GKYEEALEAYEKALELDPN 100 (100)
T ss_pred HhHHHHHHHHHHHHccCCC
Confidence 9999999999999998874
No 153
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=99.22 E-value=2.8e-09 Score=85.06 Aligned_cols=104 Identities=20% Similarity=0.167 Sum_probs=93.5
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHHHhccCCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHHHHHh
Q 009278 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHL 81 (538)
Q Consensus 2 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 81 (538)
|.-++++|..|-..|-+.-|.-.|.+++.+.|.-+.++..+|.-+...|+|+.|.+.|+..++++|.+--+..++|..+.
T Consensus 65 A~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y 144 (297)
T COG4785 65 AQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY 144 (297)
T ss_pred HHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeee
Confidence 45678888888899999999999999999999999999999999999999999999999999999999889999999988
Q ss_pred hccCHHHHHHHHHhhhhcCCCcHH
Q 009278 82 GLQDYIEAVNSYKKGLDIDPNNEA 105 (538)
Q Consensus 82 ~~~~~~~A~~~~~~al~~~p~~~~ 105 (538)
--|++.-|.+.+.+..+.+|++|-
T Consensus 145 Y~gR~~LAq~d~~~fYQ~D~~DPf 168 (297)
T COG4785 145 YGGRYKLAQDDLLAFYQDDPNDPF 168 (297)
T ss_pred ecCchHhhHHHHHHHHhcCCCChH
Confidence 999999999999998888888874
No 154
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=99.21 E-value=1.2e-08 Score=85.10 Aligned_cols=187 Identities=20% Similarity=0.172 Sum_probs=136.9
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHHHhccCCcc---hHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchH---HHHH
Q 009278 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDN---HVLYSNRSAAHASLHNYADALADAKKTVELKPDWSK---GYSR 75 (538)
Q Consensus 2 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~ 75 (538)
+..|+..|...++.|+|++|+..|+.+....|.+ ..+...++.++++.++++.|+...++-+.+.|+++. +++.
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl 113 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL 113 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence 4578889999999999999999999998888765 478888999999999999999999999999887754 5677
Q ss_pred HHHHHhhc--------cCHHHHHHHHHhhhhcCCCcHHHHhhHHHHHHHHhhcccCCCCCCCCcccccccCCchhhcccC
Q 009278 76 LGAAHLGL--------QDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTA 147 (538)
Q Consensus 76 la~~~~~~--------~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (538)
.|.+++.. .-..+|...|+..+...|+..-+-.....+
T Consensus 114 kgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i---------------------------------- 159 (254)
T COG4105 114 KGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARI---------------------------------- 159 (254)
T ss_pred HHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHH----------------------------------
Confidence 77776543 123456666667777777653321111111
Q ss_pred CCCCCCcccHHHHHHHHHhhhcCCCchhhhhchHHHHHHHHHHHhhhcCCCCCCCccccccccCCCCCCCccccccCCCC
Q 009278 148 DPTTRSYLDQDDFRNMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPES 227 (538)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (538)
T Consensus 160 -------------------------------------------------------------------------------- 159 (254)
T COG4105 160 -------------------------------------------------------------------------------- 159 (254)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCccccHHHHHHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhCCHHHHH
Q 009278 228 EPEPEPMELTEEEKEAKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDED---ISYLTNRAAVYLEMGKYEECI 304 (538)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~ 304 (538)
.......+.--..+|..|.+.|.+..|+.-++.+++..|+. .+++..+..+|..+|-.++|.
T Consensus 160 ---------------~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~ 224 (254)
T COG4105 160 ---------------VKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAK 224 (254)
T ss_pred ---------------HHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHH
Confidence 00111233344667999999999999999999999987765 467888889999999999988
Q ss_pred HHHHHHHHccccc
Q 009278 305 KDCDKAVERGREL 317 (538)
Q Consensus 305 ~~~~~~~~~~~~~ 317 (538)
..-.-+-.-.|++
T Consensus 225 ~~~~vl~~N~p~s 237 (254)
T COG4105 225 KTAKVLGANYPDS 237 (254)
T ss_pred HHHHHHHhcCCCC
Confidence 7665544445554
No 155
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.21 E-value=4.9e-08 Score=80.95 Aligned_cols=169 Identities=17% Similarity=0.185 Sum_probs=118.4
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHHHHHHH
Q 009278 251 LKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTR 330 (538)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (538)
.....-|.++...|++++|++..... .+.++...-..++.++.+.+-|...++++.+++.+. ....++.+|..
T Consensus 109 i~~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~--tLtQLA~awv~ 181 (299)
T KOG3081|consen 109 IDLLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDA--TLTQLAQAWVK 181 (299)
T ss_pred HHHHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHH--HHHHHHHHHHH
Confidence 34455578888999999999888763 455666667788889999999999999988877543 23334555544
Q ss_pred hHHHHHHhhhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcCChHHHHH
Q 009278 331 KGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQ 410 (538)
Q Consensus 331 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 410 (538)
++. ....+.+|.-+|+..-. ..|..+......+.+++.+|+|++|..
T Consensus 182 la~-------ggek~qdAfyifeE~s~--------------------------k~~~T~~llnG~Av~~l~~~~~eeAe~ 228 (299)
T KOG3081|consen 182 LAT-------GGEKIQDAFYIFEELSE--------------------------KTPPTPLLLNGQAVCHLQLGRYEEAES 228 (299)
T ss_pred Hhc-------cchhhhhHHHHHHHHhc--------------------------ccCCChHHHccHHHHHHHhcCHHHHHH
Confidence 432 11225566666666555 556667777778888888888888888
Q ss_pred HHHHHHhcCCCCchhHhHHHHHHHHhCCchhHHH-HHHHHHhcCCCchHH
Q 009278 411 HYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLK-DADKCIELDPTFSKG 459 (538)
Q Consensus 411 ~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~-~~~~al~~~p~~~~~ 459 (538)
.++.++..++++++++.++..+-...|...++.. ++.+....+|+.+.+
T Consensus 229 lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~v 278 (299)
T KOG3081|consen 229 LLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPFV 278 (299)
T ss_pred HHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchHH
Confidence 8888888888888888888888777777766553 445555556766543
No 156
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.20 E-value=5.2e-10 Score=91.92 Aligned_cols=109 Identities=17% Similarity=0.165 Sum_probs=92.6
Q ss_pred HHHHhhcCCHHHHHHHHHHHhccCCcc--hHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCc---hHHHHHHHHHHhhc
Q 009278 9 GNAAFSSGDYEAAVRHFTEAISLSPDN--HVLYSNRSAAHASLHNYADALADAKKTVELKPDW---SKGYSRLGAAHLGL 83 (538)
Q Consensus 9 g~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~ 83 (538)
.+-+|-.+.|..+...+...++..+.+ ..+++.+|.++...|++++|+..|++++.+.|+. +.++..+|.++...
T Consensus 6 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~ 85 (168)
T CHL00033 6 RNDNFIDKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSN 85 (168)
T ss_pred ccccccccccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHc
Confidence 345566777888888888877776665 6788999999999999999999999999887763 45899999999999
Q ss_pred cCHHHHHHHHHhhhhcCCCcHHHHhhHHHHHHHH
Q 009278 84 QDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAA 117 (538)
Q Consensus 84 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 117 (538)
|++++|+..|++++.++|.....+..++.++...
T Consensus 86 g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~ 119 (168)
T CHL00033 86 GEHTKALEYYFQALERNPFLPQALNNMAVICHYR 119 (168)
T ss_pred CCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 9999999999999999999988877777665544
No 157
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.20 E-value=1.3e-09 Score=86.84 Aligned_cols=132 Identities=23% Similarity=0.235 Sum_probs=103.4
Q ss_pred hhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCc---hHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 009278 345 YEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKI---ADEEREKGNEFFKQQKYPEAIQHYTESLRRNPK 421 (538)
Q Consensus 345 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~ 421 (538)
.++|-..|..++... ..++...+...++......|+. ..+.+.+|.+++..|++++|+..|+.++...|+
T Consensus 8 ~~~a~~~y~~~~~~~-------~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d 80 (145)
T PF09976_consen 8 AEQASALYEQALQAL-------QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPD 80 (145)
T ss_pred HHHHHHHHHHHHHHH-------HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC
Confidence 445555555555421 2445555555666666677777 566788999999999999999999999998765
Q ss_pred C---chhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCchHHHHHHHHHHHHccCHHHHHHHHHHHh
Q 009278 422 D---PRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGL 484 (538)
Q Consensus 422 ~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 484 (538)
. +.+.+.+|.++...|++++|+..++. +...+-.+.++..+|.++...|++++|+..|++|+
T Consensus 81 ~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 81 PELKPLARLRLARILLQQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 4 45788899999999999999999976 34445567788999999999999999999999875
No 158
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.20 E-value=7.8e-11 Score=79.21 Aligned_cols=65 Identities=25% Similarity=0.399 Sum_probs=60.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHHHHHhhccCHHHHHHHHHhhhhcCCCcH
Q 009278 40 SNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNE 104 (538)
Q Consensus 40 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 104 (538)
+.+|..++..|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++.+|+++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 46899999999999999999999999999999999999999999999999999999999999975
No 159
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.20 E-value=9.4e-10 Score=98.41 Aligned_cols=224 Identities=21% Similarity=0.247 Sum_probs=158.3
Q ss_pred hHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchh
Q 009278 246 RKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDE------DISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRS 319 (538)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 319 (538)
...-+..+...|..|...+++++|..+|.++....-. -...+...+.++... ++++|+.++++++.+.-.. .
T Consensus 31 ~e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~-G 108 (282)
T PF14938_consen 31 YEEAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREA-G 108 (282)
T ss_dssp HHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHC-T
T ss_pred HHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhc-C
Confidence 3456778888999999999999999999999765321 134566667776655 9999999999999976543 3
Q ss_pred hHHHHHHHHHHhHHHHHHh-hhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHH
Q 009278 320 DFKMIARALTRKGTALVKM-AKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNE 398 (538)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~ 398 (538)
.....+..+..+|.++... ++ +++|+++|++++.... ..+... .....+..+|.+
T Consensus 109 ~~~~aA~~~~~lA~~ye~~~~d----~e~Ai~~Y~~A~~~y~------~e~~~~--------------~a~~~~~~~A~l 164 (282)
T PF14938_consen 109 RFSQAAKCLKELAEIYEEQLGD----YEKAIEYYQKAAELYE------QEGSPH--------------SAAECLLKAADL 164 (282)
T ss_dssp -HHHHHHHHHHHHHHHCCTT------HHHHHHHHHHHHHHHH------HTT-HH--------------HHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHcCC----HHHHHHHHHHHHHHHH------HCCChh--------------hHHHHHHHHHHH
Confidence 3344488999999999888 88 9999999999998321 111111 124556788999
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCc-------hhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCchH-----HHHHHHHH
Q 009278 399 FFKQQKYPEAIQHYTESLRRNPKDP-------RTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSK-----GYTRKGAI 466 (538)
Q Consensus 399 ~~~~~~~~~A~~~~~~al~~~~~~~-------~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~-----~~~~l~~~ 466 (538)
+...|+|++|++.|+++....-+++ ..++..+.|++..|++..|...+++....+|.... ....+-.+
T Consensus 165 ~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A 244 (282)
T PF14938_consen 165 YARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEA 244 (282)
T ss_dssp HHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHH
Confidence 9999999999999999987643322 34567888999999999999999999999886533 23333333
Q ss_pred HHH--ccCHHHHHHHHHHHhccCCCCHHHHH
Q 009278 467 QFF--LKEYDKALETYQEGLKHDPQNQELLD 495 (538)
Q Consensus 467 ~~~--~g~~~~A~~~~~~al~~~p~~~~~~~ 495 (538)
+.. ...+.+|+..|.+...++|=...++.
T Consensus 245 ~~~~D~e~f~~av~~~d~~~~ld~w~~~~l~ 275 (282)
T PF14938_consen 245 YEEGDVEAFTEAVAEYDSISRLDNWKTKMLL 275 (282)
T ss_dssp HHTT-CCCHHHHCHHHTTSS---HHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHcccCccHHHHHHHHH
Confidence 332 45688888888887777664444433
No 160
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=99.19 E-value=4.6e-10 Score=97.48 Aligned_cols=107 Identities=14% Similarity=0.085 Sum_probs=96.8
Q ss_pred hHHHHHHHHH-hhcCCHHHHHHHHHHHhccCCcc---hHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC---chHHHHH
Q 009278 3 DEAKAKGNAA-FSSGDYEAAVRHFTEAISLSPDN---HVLYSNRSAAHASLHNYADALADAKKTVELKPD---WSKGYSR 75 (538)
Q Consensus 3 ~~~~~~g~~~-~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~ 75 (538)
..++..|..+ +..|+|++|+..|+..+...|++ +.+++.+|.+|+..|++++|+..|++++...|+ .+.+++.
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 4667788876 66899999999999999999987 589999999999999999999999999998887 4788999
Q ss_pred HHHHHhhccCHHHHHHHHHhhhhcCCCcHHHHhh
Q 009278 76 LGAAHLGLQDYIEAVNSYKKGLDIDPNNEALKSG 109 (538)
Q Consensus 76 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 109 (538)
+|.++..+|++++|...|+++++..|+...+...
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~A 256 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQA 256 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHH
Confidence 9999999999999999999999999998765443
No 161
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=99.17 E-value=7.9e-09 Score=89.16 Aligned_cols=317 Identities=16% Similarity=0.164 Sum_probs=224.4
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHhccCCcch---HHHHHHHHHHHhcCCHHHHHHHHHHHhcc----CCC--chHHHH
Q 009278 4 EAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNH---VLYSNRSAAHASLHNYADALADAKKTVEL----KPD--WSKGYS 74 (538)
Q Consensus 4 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~--~~~~~~ 74 (538)
.....|..++.+.++++|+..+.+.+..-.+.. ..+-.+..+...+|.|++++.+--..+.. +.. .-.++.
T Consensus 8 ~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~l 87 (518)
T KOG1941|consen 8 KQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYL 87 (518)
T ss_pred HHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457789999999999999999999988654432 34445566778888888877665444332 211 235778
Q ss_pred HHHHHHhhccCHHHHHHHHHhhhhcCCCcHHHHhhHHHHHHHHhhcccCCCCCCCCcccccccCCchhhcccCCCCCCCc
Q 009278 75 RLGAAHLGLQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSY 154 (538)
Q Consensus 75 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (538)
.+++.+...-++.+++.+-+..+.+....+.-
T Consensus 88 nlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~------------------------------------------------ 119 (518)
T KOG1941|consen 88 NLARSNEKLCEFHKTISYCKTCLGLPGTRAGQ------------------------------------------------ 119 (518)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhcCCCCCccc------------------------------------------------
Confidence 88888888888888887776666543222100
Q ss_pred ccHHHHHHHHHhhhcCCCchhhhhchHHHHHHHHHHHhhhcCCCCCCCccccccccCCCCCCCccccccCCCCCCCCCCc
Q 009278 155 LDQDDFRNMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPM 234 (538)
Q Consensus 155 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (538)
T Consensus 120 -------------------------------------------------------------------------------- 119 (518)
T KOG1941|consen 120 -------------------------------------------------------------------------------- 119 (518)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccHHHHHHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHhCCHHHHHHHHH
Q 009278 235 ELTEEEKEAKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDED------ISYLTNRAAVYLEMGKYEECIKDCD 308 (538)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~ 308 (538)
.-......+|..+...+.|+++++.|+.+++...++ ..++..+|.++.+..++++|..+..
T Consensus 120 -------------~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~ 186 (518)
T KOG1941|consen 120 -------------LGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPC 186 (518)
T ss_pred -------------ccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhH
Confidence 011223447888899999999999999999875433 3578899999999999999999999
Q ss_pred HHHHccccch-h--hHHHHHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcC
Q 009278 309 KAVERGRELR-S--DFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFD 385 (538)
Q Consensus 309 ~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 385 (538)
++.++..... . .......+++.++..+...|. .-+|.++.+++.++.-. .| ..
T Consensus 187 kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~----LgdA~e~C~Ea~klal~------~G--------------dr 242 (518)
T KOG1941|consen 187 KAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGR----LGDAMECCEEAMKLALQ------HG--------------DR 242 (518)
T ss_pred hHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcc----cccHHHHHHHHHHHHHH------hC--------------Ch
Confidence 9988754432 1 122235677788888888888 88999998888773211 00 22
Q ss_pred CCchHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC------CchhHhHHHHHHHHhCCchh-----HHHHHHHHHhcCC
Q 009278 386 PKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPK------DPRTYSNRAACYTKLGAMPE-----GLKDADKCIELDP 454 (538)
Q Consensus 386 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~------~~~~~~~la~~~~~~~~~~~-----A~~~~~~al~~~p 454 (538)
+-.......+|++|...|+.+.|..-|+.+...... ...++...+.++....-..+ |+++-++++++..
T Consensus 243 a~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~ 322 (518)
T KOG1941|consen 243 ALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVAS 322 (518)
T ss_pred HHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHH
Confidence 345667778999999999999999999998865332 24566677777665554444 8888888887643
Q ss_pred C------chHHHHHHHHHHHHccCHHHHHHHHHHHhc
Q 009278 455 T------FSKGYTRKGAIQFFLKEYDKALETYQEGLK 485 (538)
Q Consensus 455 ~------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 485 (538)
. -...+..++.+|..+|.-++=...+.++-+
T Consensus 323 ~IG~K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra~~ 359 (518)
T KOG1941|consen 323 SIGAKLSVLKLHCRLASIYRSKGLQDELRAHVVRAHE 359 (518)
T ss_pred HhhhhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHH
Confidence 2 234677899999888887777777666543
No 162
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.17 E-value=5.5e-11 Score=84.61 Aligned_cols=81 Identities=25% Similarity=0.395 Sum_probs=67.1
Q ss_pred cCChHHHHHHHHHHHhcCCC--CchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCchHHHHHHHHHHHHccCHHHHHHH
Q 009278 402 QQKYPEAIQHYTESLRRNPK--DPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALET 479 (538)
Q Consensus 402 ~~~~~~A~~~~~~al~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 479 (538)
.|+|+.|+.+|+++++..|. +...++.+|.+++..|++++|+.++++ .+.+|.++...+.+|.++..+|++++|+..
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 57888999999999988884 456777789999999999999999988 777888888888889999999999999988
Q ss_pred HHHH
Q 009278 480 YQEG 483 (538)
Q Consensus 480 ~~~a 483 (538)
|+++
T Consensus 81 l~~~ 84 (84)
T PF12895_consen 81 LEKA 84 (84)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 8875
No 163
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=99.13 E-value=1.6e-09 Score=94.07 Aligned_cols=109 Identities=14% Similarity=0.138 Sum_probs=97.0
Q ss_pred chHHHHHHHHHH-HhcCChHHHHHHHHHHHhcCCCC---chhHhHHHHHHHHhCCchhHHHHHHHHHhcCCC---chHHH
Q 009278 388 IADEEREKGNEF-FKQQKYPEAIQHYTESLRRNPKD---PRTYSNRAACYTKLGAMPEGLKDADKCIELDPT---FSKGY 460 (538)
Q Consensus 388 ~~~~~~~la~~~-~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~ 460 (538)
....++..|..+ +..|+|++|+..|+..++..|++ +.+++.+|.+|+..|++++|+..|+++++..|+ .++++
T Consensus 141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl 220 (263)
T PRK10803 141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM 220 (263)
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence 346677777766 66799999999999999999988 479999999999999999999999999998776 57789
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHhccCCCCHHHHHH
Q 009278 461 TRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDG 496 (538)
Q Consensus 461 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 496 (538)
+.+|.++..+|++++|...|+++++..|++..+...
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~A 256 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQA 256 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHH
Confidence 999999999999999999999999999998765443
No 164
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=99.10 E-value=1.8e-09 Score=81.75 Aligned_cols=105 Identities=18% Similarity=0.244 Sum_probs=95.7
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHHHhccCCcc---hHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCch---HHHHH
Q 009278 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDN---HVLYSNRSAAHASLHNYADALADAKKTVELKPDWS---KGYSR 75 (538)
Q Consensus 2 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~ 75 (538)
++.++..|...++.|+|++|++.|+.+....|.. ..+.+.+|.+|+..|++++|+..+++-++++|+++ -+++.
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~ 89 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYM 89 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence 4678999999999999999999999999998864 58899999999999999999999999999999876 47899
Q ss_pred HHHHHhhccC---------------HHHHHHHHHhhhhcCCCcHHH
Q 009278 76 LGAAHLGLQD---------------YIEAVNSYKKGLDIDPNNEAL 106 (538)
Q Consensus 76 la~~~~~~~~---------------~~~A~~~~~~al~~~p~~~~~ 106 (538)
.|.+++.+.. ..+|...|+++++..|++.-+
T Consensus 90 ~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 90 RGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred HHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence 9999998876 889999999999999998654
No 165
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.10 E-value=1e-08 Score=81.72 Aligned_cols=133 Identities=20% Similarity=0.158 Sum_probs=105.7
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHH
Q 009278 249 KALKEKEAGNAAYKKKEFEKAIEHYSSALELDDED---ISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIA 325 (538)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 325 (538)
.+...+.........+++..+...++..+..+|+. ..+.+.+|.++...|++++|+..|+.++...|+... ..
T Consensus 10 ~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l----~~ 85 (145)
T PF09976_consen 10 QASALYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPEL----KP 85 (145)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHH----HH
Confidence 34445555556667999999999999999999988 567888999999999999999999999997754321 14
Q ss_pred HHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcCCh
Q 009278 326 RALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKY 405 (538)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 405 (538)
.+.++++.++...++ +++|+..++... ..+..+.++..+|.++...|++
T Consensus 86 ~a~l~LA~~~~~~~~----~d~Al~~L~~~~---------------------------~~~~~~~~~~~~Gdi~~~~g~~ 134 (145)
T PF09976_consen 86 LARLRLARILLQQGQ----YDEALATLQQIP---------------------------DEAFKALAAELLGDIYLAQGDY 134 (145)
T ss_pred HHHHHHHHHHHHcCC----HHHHHHHHHhcc---------------------------CcchHHHHHHHHHHHHHHCCCH
Confidence 567788888888888 999998886632 2445567788899999999999
Q ss_pred HHHHHHHHHHH
Q 009278 406 PEAIQHYTESL 416 (538)
Q Consensus 406 ~~A~~~~~~al 416 (538)
++|+..|++++
T Consensus 135 ~~A~~~y~~Al 145 (145)
T PF09976_consen 135 DEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHHhC
Confidence 99999998874
No 166
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=99.09 E-value=3.4e-10 Score=77.02 Aligned_cols=66 Identities=20% Similarity=0.254 Sum_probs=48.1
Q ss_pred hhcCCHHHHHHHHHHHhccCCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHHH
Q 009278 13 FSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGA 78 (538)
Q Consensus 13 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 78 (538)
+..|+|++|+..|++++..+|+++.+++.+|.||+..|++++|...+++++..+|+++.++..++.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 566777777777777777777777777777777777777777777777777777777666666554
No 167
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.09 E-value=1.3e-09 Score=85.69 Aligned_cols=119 Identities=34% Similarity=0.563 Sum_probs=107.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCc-----hhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCchHHHHHHHHH
Q 009278 392 EREKGNEFFKQQKYPEAIQHYTESLRRNPKDP-----RTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAI 466 (538)
Q Consensus 392 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~-----~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 466 (538)
+..-|.-++..|+|++|..-|..++.+.|..+ .+|.+.|.++++++.++.|+..+.++|+++|.+..++...|.+
T Consensus 98 lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAea 177 (271)
T KOG4234|consen 98 LKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEA 177 (271)
T ss_pred HHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHH
Confidence 33458889999999999999999999999754 4788899999999999999999999999999999999999999
Q ss_pred HHHccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhccC
Q 009278 467 QFFLKEYDKALETYQEGLKHDPQNQELLDGVRRCVQQINKAGRG 510 (538)
Q Consensus 467 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a 510 (538)
|.++..+++|++.|+++++.+|...++...+.++--..+...+.
T Consensus 178 yek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~ernEk 221 (271)
T KOG4234|consen 178 YEKMEKYEEALEDYKKILESDPSRREAREAIARLPPKINERNEK 221 (271)
T ss_pred HHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHHHHHHH
Confidence 99999999999999999999999999998888876666655444
No 168
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=99.07 E-value=1.6e-08 Score=80.84 Aligned_cols=104 Identities=16% Similarity=0.134 Sum_probs=92.0
Q ss_pred hHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHH
Q 009278 246 RKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIA 325 (538)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 325 (538)
+...+..++..|..|-..|-+.-|.--|.+++.+.|.-+.++..+|..+...|+++.|.+.|+..++++|.. -
T Consensus 61 ~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y-------~ 133 (297)
T COG4785 61 DEERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY-------N 133 (297)
T ss_pred hHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcc-------h
Confidence 456788899999999999999999999999999999999999999999999999999999999999999987 4
Q ss_pred HHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCC
Q 009278 326 RALTRKGTALVKMAKCSKDYEPAIETFQKALTEHR 360 (538)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 360 (538)
.+..+.|..+.--|+ +.-|.+.+.+-.+.+|
T Consensus 134 Ya~lNRgi~~YY~gR----~~LAq~d~~~fYQ~D~ 164 (297)
T COG4785 134 YAHLNRGIALYYGGR----YKLAQDDLLAFYQDDP 164 (297)
T ss_pred HHHhccceeeeecCc----hHhhHHHHHHHHhcCC
Confidence 566677777776777 8888888888888433
No 169
>PRK11906 transcriptional regulator; Provisional
Probab=99.04 E-value=9.2e-09 Score=93.37 Aligned_cols=122 Identities=7% Similarity=0.010 Sum_probs=106.7
Q ss_pred HHHHHHHHHH---HcCCCchHHHHHHHHHHHhc---------CChHHHHHHHHHHHhcCCCCchhHhHHHHHHHHhCCch
Q 009278 373 KAKKELEQQE---IFDPKIADEEREKGNEFFKQ---------QKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMP 440 (538)
Q Consensus 373 ~a~~~~~~~~---~~~~~~~~~~~~la~~~~~~---------~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~ 440 (538)
.|+..|.+++ ..+|..+.++..++.+++.. ....+|....+++++++|.|+.++..+|.+....++++
T Consensus 276 ~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~ 355 (458)
T PRK11906 276 RAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAK 355 (458)
T ss_pred HHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchh
Confidence 3344444444 48999999999999988754 23567889999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcCCCchHHHHHHHHHHHHccCHHHHHHHHHHHhccCCCCHHHH
Q 009278 441 EGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELL 494 (538)
Q Consensus 441 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 494 (538)
.|...|++++.++|+.+.+++..|.+....|+.++|.+.++++++++|....+-
T Consensus 356 ~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~ 409 (458)
T PRK11906 356 VSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAV 409 (458)
T ss_pred hHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHH
Confidence 999999999999999999999999999999999999999999999999875543
No 170
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.03 E-value=5.9e-09 Score=87.78 Aligned_cols=108 Identities=20% Similarity=0.198 Sum_probs=99.6
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHHHhccCCcc---hHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCc---hHHHHHH
Q 009278 3 DEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDN---HVLYSNRSAAHASLHNYADALADAKKTVELKPDW---SKGYSRL 76 (538)
Q Consensus 3 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l 76 (538)
+.+++.|..++..|+|..|...|..-++..|++ +.++|.||.+++.+|++++|...|..+++..|++ +++++.+
T Consensus 142 ~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 142 TKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 457899999999999999999999999999985 5899999999999999999999999999988875 5789999
Q ss_pred HHHHhhccCHHHHHHHHHhhhhcCCCcHHHHhhH
Q 009278 77 GAAHLGLQDYIEAVNSYKKGLDIDPNNEALKSGL 110 (538)
Q Consensus 77 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 110 (538)
|.+...+|+.++|...|+++++..|+...+...-
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~Ak 255 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKRYPGTDAAKLAK 255 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 9999999999999999999999999988775543
No 171
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=99.03 E-value=1.1e-08 Score=98.14 Aligned_cols=120 Identities=18% Similarity=0.171 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHHhcC--------ChHHHHHHHHHHHhc--CCCCchhHhHHHHHHHHhCCchh
Q 009278 372 EKAKKELEQQEIFDPKIADEEREKGNEFFKQQ--------KYPEAIQHYTESLRR--NPKDPRTYSNRAACYTKLGAMPE 441 (538)
Q Consensus 372 ~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~--------~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~ 441 (538)
..|+.+|+++++.+|+++.++..++.++.... +...+.....+++.. +|.++.++..+|......|++++
T Consensus 359 ~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~ 438 (517)
T PRK10153 359 NKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDE 438 (517)
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHH
Confidence 34444555555599999999998888776542 234556666676664 67778889999999999999999
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHHccCHHHHHHHHHHHhccCCCCHH
Q 009278 442 GLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQE 492 (538)
Q Consensus 442 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 492 (538)
|...+++++.++|+ ..+|..+|.++...|++++|++.|++|+.++|.++.
T Consensus 439 A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 439 AYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred HHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 99999999999994 889999999999999999999999999999999875
No 172
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=99.03 E-value=1.6e-07 Score=81.26 Aligned_cols=255 Identities=17% Similarity=0.235 Sum_probs=192.9
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHHH
Q 009278 250 ALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDI---SYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIAR 326 (538)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 326 (538)
+......|.-++...++++|+..+.+.+..-.+.. ..+-.+..+..++|.|++++..--..+....+..+ ......
T Consensus 6 ~k~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~d-s~~~~e 84 (518)
T KOG1941|consen 6 TKKQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELED-SDFLLE 84 (518)
T ss_pred hHHHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 34456678889999999999999999887654432 34445567788899999888776666654443322 223367
Q ss_pred HHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCC-------------hhHHHhhhhHHHHHHHHHHHHHcCCCc-----
Q 009278 327 ALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRN-------------PDTLKKLNEAEKAKKELEQQEIFDPKI----- 388 (538)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-------------~~~~~~~~~~~~a~~~~~~~~~~~~~~----- 388 (538)
++.+++..+....+ +.+++.+-+..+..... +..+..++.++++++.|+.+.....++
T Consensus 85 a~lnlar~~e~l~~----f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~L 160 (518)
T KOG1941|consen 85 AYLNLARSNEKLCE----FHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAML 160 (518)
T ss_pred HHHHHHHHHHHHHH----hhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCcee
Confidence 88888888888888 99999888888775433 235677889999999999998864433
Q ss_pred -hHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC----C------chhHhHHHHHHHHhCCchhHHHHHHHHHhcC----
Q 009278 389 -ADEEREKGNEFFKQQKYPEAIQHYTESLRRNPK----D------PRTYSNRAACYTKLGAMPEGLKDADKCIELD---- 453 (538)
Q Consensus 389 -~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~----~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~---- 453 (538)
..++..+|..+...+++++|..+..++.++... + ..+++.++..+..+|+.-.|.++.+++.++.
T Consensus 161 Elqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~G 240 (518)
T KOG1941|consen 161 ELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHG 240 (518)
T ss_pred eeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhC
Confidence 356788999999999999999999999876432 1 2467889999999999999999999998763
Q ss_pred --CCchHHHHHHHHHHHHccCHHHHHHHHHHHhccCC------CCHHHHHHHHHHHHHhhhhcc
Q 009278 454 --PTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDP------QNQELLDGVRRCVQQINKAGR 509 (538)
Q Consensus 454 --p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~l~~~~~~~~~~~~ 509 (538)
|-......-+|.+|...|+.+.|..-|+.|+.... ...+++...++++..+.-..+
T Consensus 241 dra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k 304 (518)
T KOG1941|consen 241 DRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQNK 304 (518)
T ss_pred ChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhc
Confidence 33455677899999999999999999999987532 235566777777666655444
No 173
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.01 E-value=6.1e-08 Score=97.79 Aligned_cols=216 Identities=13% Similarity=0.040 Sum_probs=170.9
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-ccccchhhHHHHHHHHHHhHHHHHHhhhcccCh
Q 009278 267 EKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVE-RGRELRSDFKMIARALTRKGTALVKMAKCSKDY 345 (538)
Q Consensus 267 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (538)
.+..+-|++.+..+|++.-.|..+...+.+.++.++|.+..++++. +++........+..+|.++-..|. . -
T Consensus 1441 pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG---~----e 1513 (1710)
T KOG1070|consen 1441 PESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYG---T----E 1513 (1710)
T ss_pred CcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhC---c----H
Confidence 3445667777888888888888888888888888888888888886 344433333333444444443332 1 3
Q ss_pred hHHHHHHHHHHhcCCC-------hhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 009278 346 EPAIETFQKALTEHRN-------PDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRR 418 (538)
Q Consensus 346 ~~A~~~~~~~~~~~~~-------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 418 (538)
+.-.+.|+++.+.... ..+|...+++++|.++++.+++...+...+|..+|..++++.+-+.|...+.+|++.
T Consensus 1514 esl~kVFeRAcqycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~ 1593 (1710)
T KOG1070|consen 1514 ESLKKVFERACQYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKS 1593 (1710)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh
Confidence 4444555555554432 235666677888888888888888889999999999999999999999999999999
Q ss_pred CCC--CchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCchHHHHHHHHHHHHccCHHHHHHHHHHHhccCCC
Q 009278 419 NPK--DPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQ 489 (538)
Q Consensus 419 ~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 489 (538)
-|. +.......|.+-++.|+.+.+...|+-.+.-+|...+.|.-+...-.+.|+.+-+...|++++.+.-.
T Consensus 1594 lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1594 LPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred cchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 997 77888899999999999999999999999999999999999999999999999999999999987533
No 174
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=99.01 E-value=2.9e-08 Score=95.34 Aligned_cols=152 Identities=13% Similarity=0.027 Sum_probs=108.3
Q ss_pred hhCCCCHHHH--HHHHHHHHHhCC---HHHHHHHHHHHHHccccchhhHHHHHHHHHHhHHHHHHhhhcccChhHHHHHH
Q 009278 278 ELDDEDISYL--TNRAAVYLEMGK---YEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETF 352 (538)
Q Consensus 278 ~~~p~~~~~~--~~la~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 352 (538)
...|.+..+| +..|.-+...++ ...|+.+|+++++++|++...+ ..++.++..... +...
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~-------A~la~~~~~~~~----~~~~---- 395 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQ-------AEKALADIVRHS----QQPL---- 395 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHH-------HHHHHHHHHHHh----cCCc----
Confidence 4456665554 555666665544 7799999999999999984444 333333322211 1100
Q ss_pred HHHHhcCCChhHHHhhhhHHHHHHHHHHHHH--cCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHhHHH
Q 009278 353 QKALTEHRNPDTLKKLNEAEKAKKELEQQEI--FDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRA 430 (538)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la 430 (538)
.......+.....++.. .+|..+.++..+|.++...|++++|...+++++.++| +..+|..+|
T Consensus 396 --------------~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG 460 (517)
T PRK10153 396 --------------DEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLG 460 (517)
T ss_pred --------------cHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHH
Confidence 00111222222223222 3677788999999999999999999999999999999 588999999
Q ss_pred HHHHHhCCchhHHHHHHHHHhcCCCchHH
Q 009278 431 ACYTKLGAMPEGLKDADKCIELDPTFSKG 459 (538)
Q Consensus 431 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 459 (538)
.++...|++++|+..|++++.++|.++..
T Consensus 461 ~~~~~~G~~~eA~~~~~~A~~L~P~~pt~ 489 (517)
T PRK10153 461 KVYELKGDNRLAADAYSTAFNLRPGENTL 489 (517)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCchH
Confidence 99999999999999999999999998853
No 175
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=99.01 E-value=2.1e-07 Score=77.74 Aligned_cols=191 Identities=18% Similarity=0.190 Sum_probs=133.2
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHH
Q 009278 249 KALKEKEAGNAAYKKKEFEKAIEHYSSALELDDED---ISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIA 325 (538)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 325 (538)
.+..++..|...++.|+|++|+..|+.+....|.+ ..+...++.++.+.++++.|+...++-+.+.|.++.. .
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~----d 108 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA----D 108 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh----h
Confidence 56789999999999999999999999999998876 4788999999999999999999999999999998776 4
Q ss_pred HHHHHhHHHHHHhhhc----ccChhHHHHHHHHHHhcCCChh----HHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHH
Q 009278 326 RALTRKGTALVKMAKC----SKDYEPAIETFQKALTEHRNPD----TLKKLNEAEKAKKELEQQEIFDPKIADEEREKGN 397 (538)
Q Consensus 326 ~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~~~----~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~ 397 (538)
.+++..|.++...-.. +.-...|+..|+..+...|++. +...+..+..+ ...--..+|.
T Consensus 109 Y~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~-------------LA~~Em~Iar 175 (254)
T COG4105 109 YAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDA-------------LAGHEMAIAR 175 (254)
T ss_pred HHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHH-------------HHHHHHHHHH
Confidence 5666666654432211 1124567777888888777643 11111111111 1122245677
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCc---hhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCc
Q 009278 398 EFFKQQKYPEAIQHYTESLRRNPKDP---RTYSNRAACYTKLGAMPEGLKDADKCIELDPTF 456 (538)
Q Consensus 398 ~~~~~~~~~~A~~~~~~al~~~~~~~---~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 456 (538)
.|.+.|.+-.|+.-++.+++..|+.+ +++..+..+|..+|-.++|...-.-.-...|++
T Consensus 176 yY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s 237 (254)
T COG4105 176 YYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDS 237 (254)
T ss_pred HHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC
Confidence 77778888888888877777766543 456667777777777777766543333333443
No 176
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=1.1e-09 Score=88.82 Aligned_cols=99 Identities=25% Similarity=0.473 Sum_probs=95.4
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHHHHhccCCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHHHHH
Q 009278 1 MADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAH 80 (538)
Q Consensus 1 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 80 (538)
+++.+.+.|+.++....|..|+..|.++|.++|..+..+.+.+.|++++.+++.+...+.+++++.|+...+++.+|.+.
T Consensus 9 ~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~ 88 (284)
T KOG4642|consen 9 SAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWL 88 (284)
T ss_pred HHHHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCHHHHHHHHHhhhhc
Q 009278 81 LGLQDYIEAVNSYKKGLDI 99 (538)
Q Consensus 81 ~~~~~~~~A~~~~~~al~~ 99 (538)
+....|++|+..+.++..+
T Consensus 89 l~s~~~~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 89 LQSKGYDEAIKVLQRAYSL 107 (284)
T ss_pred HhhccccHHHHHHHHHHHH
Confidence 9999999999999999654
No 177
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=99.00 E-value=4.4e-06 Score=74.25 Aligned_cols=168 Identities=31% Similarity=0.418 Sum_probs=97.2
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHH-HHHHhCCHHHHHHHHHHHHHcccc-chhhHHHHHHHHHH
Q 009278 253 EKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAA-VYLEMGKYEECIKDCDKAVERGRE-LRSDFKMIARALTR 330 (538)
Q Consensus 253 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~-~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 330 (538)
+...+......+++..++..+..++...+.+.......+. ++...|+++.|...+.+++...|. .. ....+..
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~~ 172 (291)
T COG0457 98 LLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNE-----LAEALLA 172 (291)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccc-----hHHHHHH
Confidence 4444555666666777777777777776666555555555 677777777777777777665442 00 0222333
Q ss_pred hHHHHHHhhhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCC-chHHHHHHHHHHHhcCChHHHH
Q 009278 331 KGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPK-IADEEREKGNEFFKQQKYPEAI 409 (538)
Q Consensus 331 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~ 409 (538)
.+..+...+. ++.++..+.+++. ..+. ....+..++..+...+++..|+
T Consensus 173 ~~~~~~~~~~----~~~a~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~a~ 222 (291)
T COG0457 173 LGALLEALGR----YEEALELLEKALK--------------------------LNPDDDAEALLNLGLLYLKLGKYEEAL 222 (291)
T ss_pred hhhHHHHhcC----HHHHHHHHHHHHh--------------------------hCcccchHHHHHhhHHHHHcccHHHHH
Confidence 3333333333 5555555555555 4444 4555666666666666666666
Q ss_pred HHHHHHHhcCCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCC
Q 009278 410 QHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPT 455 (538)
Q Consensus 410 ~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 455 (538)
..+..++...|.....+..++..+...+.++++...+.+++...|.
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 223 EYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 6666666666654455555555555445566666666666665554
No 178
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.98 E-value=2.1e-09 Score=73.13 Aligned_cols=67 Identities=24% Similarity=0.267 Sum_probs=61.9
Q ss_pred HHhcCCHHHHHHHHHHHhccCCCchHHHHHHHHHHhhccCHHHHHHHHHhhhhcCCCcHHHHhhHHH
Q 009278 46 HASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNEALKSGLAD 112 (538)
Q Consensus 46 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 112 (538)
++..|++++|+..|++++..+|++..+++.+|.++...|++++|...+++++..+|+++.++..++.
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 3678999999999999999999999999999999999999999999999999999999888777664
No 179
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.98 E-value=1.9e-06 Score=71.71 Aligned_cols=168 Identities=15% Similarity=0.219 Sum_probs=127.3
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCCh
Q 009278 283 DISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNP 362 (538)
Q Consensus 283 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~ 362 (538)
+......-|.++...|++++|......... .++....-.++.++.+ .+-|...++++.+..
T Consensus 107 n~i~~l~aa~i~~~~~~~deAl~~~~~~~~------------lE~~Al~VqI~lk~~r----~d~A~~~lk~mq~id--- 167 (299)
T KOG3081|consen 107 NLIDLLLAAIIYMHDGDFDEALKALHLGEN------------LEAAALNVQILLKMHR----FDLAEKELKKMQQID--- 167 (299)
T ss_pred hHHHHHHhhHHhhcCCChHHHHHHHhccch------------HHHHHHHHHHHHHHHH----HHHHHHHHHHHHccc---
Confidence 335566667889999999999998877433 2333334455556666 888888888877732
Q ss_pred hHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHH----hcCChHHHHHHHHHHHhcCCCCchhHhHHHHHHHHhCC
Q 009278 363 DTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFF----KQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGA 438 (538)
Q Consensus 363 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~----~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~ 438 (538)
.+ ..+..+|..+. ..+++.+|.-+|+..-+..|..+..++.++.|.+.+|+
T Consensus 168 -----------------------ed--~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~ 222 (299)
T KOG3081|consen 168 -----------------------ED--ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGR 222 (299)
T ss_pred -----------------------hH--HHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcC
Confidence 22 22333333332 24468999999999999888899999999999999999
Q ss_pred chhHHHHHHHHHhcCCCchHHHHHHHHHHHHccCHHHHHH-HHHHHhccCCCCHHHH
Q 009278 439 MPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALE-TYQEGLKHDPQNQELL 494 (538)
Q Consensus 439 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~-~~~~al~~~p~~~~~~ 494 (538)
|++|...++.++..++++++++.++-.+-...|...++.. .+.+....+|+++.+.
T Consensus 223 ~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~vk 279 (299)
T KOG3081|consen 223 YEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPFVK 279 (299)
T ss_pred HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchHHH
Confidence 9999999999999999999999999999999998766554 5566667788887653
No 180
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.97 E-value=1.7e-08 Score=75.60 Aligned_cols=97 Identities=21% Similarity=0.111 Sum_probs=88.9
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHHHhccCCcc---hHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC---chHHHHH
Q 009278 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDN---HVLYSNRSAAHASLHNYADALADAKKTVELKPD---WSKGYSR 75 (538)
Q Consensus 2 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~ 75 (538)
++++|+.|..+-..|+.++|+..|++++...+.. ..+++.+|.++..+|++++|+..+++++...|+ +......
T Consensus 1 ~~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f 80 (120)
T PF12688_consen 1 PRALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVF 80 (120)
T ss_pred CchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHH
Confidence 4678999999999999999999999999976543 579999999999999999999999999999898 7788889
Q ss_pred HHHHHhhccCHHHHHHHHHhhhh
Q 009278 76 LGAAHLGLQDYIEAVNSYKKGLD 98 (538)
Q Consensus 76 la~~~~~~~~~~~A~~~~~~al~ 98 (538)
++.++...|+.++|+..+-.++.
T Consensus 81 ~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 81 LALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999999988775
No 181
>PRK11906 transcriptional regulator; Provisional
Probab=98.96 E-value=5.5e-08 Score=88.48 Aligned_cols=171 Identities=10% Similarity=-0.025 Sum_probs=125.6
Q ss_pred HHHHHHHHHhCC---HHHHHHHHHHHH---HccccchhhHHHHHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCC
Q 009278 288 TNRAAVYLEMGK---YEECIKDCDKAV---ERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRN 361 (538)
Q Consensus 288 ~~la~~~~~~~~---~~~A~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 361 (538)
+..|......+. .+.|+.+|.+++ .++|+....+..++.+++.....-. .....+..+|.....+++
T Consensus 259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~--~~~~~~~~~a~~~A~rAv----- 331 (458)
T PRK11906 259 MLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGK--SELELAAQKALELLDYVS----- 331 (458)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHH-----
Confidence 666666655543 567889999999 8888885444444443333211000 000111344444444444
Q ss_pred hhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHhHHHHHHHHhCCchh
Q 009278 362 PDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPE 441 (538)
Q Consensus 362 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~ 441 (538)
+++|.++.++..+|.++...++++.|+..|++++.++|+.+.+|+..|.+....|+.++
T Consensus 332 ---------------------eld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~ 390 (458)
T PRK11906 332 ---------------------DITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEE 390 (458)
T ss_pred ---------------------hcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHH
Confidence 49999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHHH-HHHccCHHHHHHHHHHHhcc
Q 009278 442 GLKDADKCIELDPTFSKGYTRKGAI-QFFLKEYDKALETYQEGLKH 486 (538)
Q Consensus 442 A~~~~~~al~~~p~~~~~~~~l~~~-~~~~g~~~~A~~~~~~al~~ 486 (538)
|...++++++++|....+-...-.+ .+-..-.++|+..|-+--+.
T Consensus 391 a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (458)
T PRK11906 391 ARICIDKSLQLEPRRRKAVVIKECVDMYVPNPLKNNIKLYYKETES 436 (458)
T ss_pred HHHHHHHHhccCchhhHHHHHHHHHHHHcCCchhhhHHHHhhcccc
Confidence 9999999999999876655444444 44456678888888765443
No 182
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.96 E-value=8.9e-07 Score=89.79 Aligned_cols=171 Identities=14% Similarity=0.025 Sum_probs=128.5
Q ss_pred cccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHHHHHHHhHHHHHHhhhcc
Q 009278 263 KKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCS 342 (538)
Q Consensus 263 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (538)
-|.-+.-.+.|++|.+.+ +...++..|..+|...+++++|.++++..++...+. ..+|...+..++...+
T Consensus 1510 yG~eesl~kVFeRAcqyc-d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~-------~~vW~~y~~fLl~~ne-- 1579 (1710)
T KOG1070|consen 1510 YGTEESLKKVFERACQYC-DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQT-------RKVWIMYADFLLRQNE-- 1579 (1710)
T ss_pred hCcHHHHHHHHHHHHHhc-chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcch-------hhHHHHHHHHHhcccH--
Confidence 355566677788877665 345678888889999999999999999998877654 4556666666666666
Q ss_pred cChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 009278 343 KDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKD 422 (538)
Q Consensus 343 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~ 422 (538)
-+.|...+.++++.-|. .++.......|.+.++.|+.+.+..+|+-.+..+|..
T Consensus 1580 --~~aa~~lL~rAL~~lPk------------------------~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKR 1633 (1710)
T KOG1070|consen 1580 --AEAARELLKRALKSLPK------------------------QEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKR 1633 (1710)
T ss_pred --HHHHHHHHHHHHhhcch------------------------hhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccc
Confidence 77888888888873322 1256677778888899999999999999999999999
Q ss_pred chhHhHHHHHHHHhCCchhHHHHHHHHHhcC--CCchHHHHHHHHHHHH
Q 009278 423 PRTYSNRAACYTKLGAMPEGLKDADKCIELD--PTFSKGYTRKGAIQFF 469 (538)
Q Consensus 423 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~ 469 (538)
.++|.-+...-.+.|+.+.+...|++++.+. |......+..-.-|.+
T Consensus 1634 tDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk 1682 (1710)
T KOG1070|consen 1634 TDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEK 1682 (1710)
T ss_pred hhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHH
Confidence 9999988888888999999999999998764 5545555544444443
No 183
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.95 E-value=4.2e-09 Score=72.80 Aligned_cols=69 Identities=28% Similarity=0.437 Sum_probs=44.7
Q ss_pred HHHHhhcCCHHHHHHHHHHHhccCCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHH
Q 009278 9 GNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLG 77 (538)
Q Consensus 9 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 77 (538)
..++++.++|++|+..+++++..+|.++..+..+|.++..+|++.+|+..|+++++..|+++.+...++
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a 70 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRA 70 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 345666666666666666666666666666666666666666666666666666666666665544443
No 184
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.94 E-value=6.8e-07 Score=85.74 Aligned_cols=202 Identities=13% Similarity=0.086 Sum_probs=110.5
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHHHHHHH
Q 009278 251 LKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTR 330 (538)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (538)
..|...|..+...|+.+.|+.+|..+- -|+.+..+..-+|+.++|..+.++.-. --+.+.
T Consensus 913 ~L~~WWgqYlES~GemdaAl~~Y~~A~--------D~fs~VrI~C~qGk~~kAa~iA~esgd------------~AAcYh 972 (1416)
T KOG3617|consen 913 SLYSWWGQYLESVGEMDAALSFYSSAK--------DYFSMVRIKCIQGKTDKAARIAEESGD------------KAACYH 972 (1416)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHhh--------hhhhheeeEeeccCchHHHHHHHhccc------------HHHHHH
Confidence 455666777788888888888888763 245555666667777777655544211 234555
Q ss_pred hHHHHHHhhhcccChhHHHHHHHHHHhcCCC------hhH---------HHhhhhHHHHHHHHHHHHHcCCCchHHHHHH
Q 009278 331 KGTALVKMAKCSKDYEPAIETFQKALTEHRN------PDT---------LKKLNEAEKAKKELEQQEIFDPKIADEEREK 395 (538)
Q Consensus 331 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~---------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 395 (538)
+++.|...|+ +.+|+..|.++-..... .+. .....+...|-.+|+..-. .....
T Consensus 973 laR~YEn~g~----v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~-------~~~~A 1041 (1416)
T KOG3617|consen 973 LARMYENDGD----VVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGG-------YAHKA 1041 (1416)
T ss_pred HHHHhhhhHH----HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcch-------hhhHH
Confidence 6666666666 77777776665432111 000 0000111222222222110 00011
Q ss_pred HHHHHhcCChHHHHHHHHH-----HH-----hcCCC-CchhHhHHHHHHHHhCCchhHHHHHH------HHHhcC-----
Q 009278 396 GNEFFKQQKYPEAIQHYTE-----SL-----RRNPK-DPRTYSNRAACYTKLGAMPEGLKDAD------KCIELD----- 453 (538)
Q Consensus 396 a~~~~~~~~~~~A~~~~~~-----al-----~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~------~al~~~----- 453 (538)
..+|.+.|.+.+|++.--+ ++ .++|. +|.++..-+..+....+|++|..++- .++.+.
T Consensus 1042 VmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv 1121 (1416)
T KOG3617|consen 1042 VMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNV 1121 (1416)
T ss_pred HHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 2233344444444443211 11 23443 56777777777888888888877653 333321
Q ss_pred -----------CC---------chHHHHHHHHHHHHccCHHHHHHHHHHH
Q 009278 454 -----------PT---------FSKGYTRKGAIQFFLKEYDKALETYQEG 483 (538)
Q Consensus 454 -----------p~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~a 483 (538)
|. ....+-.+|.+..++|.|..|.+-|.+|
T Consensus 1122 ~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1122 RVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred chhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhh
Confidence 11 1236778899999999998888877765
No 185
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.91 E-value=6.5e-09 Score=71.81 Aligned_cols=67 Identities=22% Similarity=0.372 Sum_probs=43.8
Q ss_pred HHHHHHhCCchhHHHHHHHHHhcCCCchHHHHHHHHHHHHccCHHHHHHHHHHHhccCCCCHHHHHH
Q 009278 430 AACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDG 496 (538)
Q Consensus 430 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 496 (538)
..+|...+++++|+.++++++..+|+++..+..+|.++..+|++.+|...|+++++..|+++.+...
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~ 68 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARAL 68 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 3456666666666666666666666666666666666666666666666666666666666655443
No 186
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.91 E-value=8.3e-07 Score=78.99 Aligned_cols=204 Identities=29% Similarity=0.363 Sum_probs=172.1
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHHH
Q 009278 249 KALKEKEAGNAAYKKKEFEKAIEHYSSALE--LDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIAR 326 (538)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 326 (538)
........+..+...+++..+...+...+. ..+.....+...+..+...+++..++..+..++...+.....
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 131 (291)
T COG0457 58 LAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLA------ 131 (291)
T ss_pred chHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchH------
Confidence 356778888899999999999999999987 688888999999999999999999999999999977765222
Q ss_pred HHHHhHH-HHHHhhhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCC---CchHHHHHHHHHHHhc
Q 009278 327 ALTRKGT-ALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDP---KIADEEREKGNEFFKQ 402 (538)
Q Consensus 327 ~~~~~~~-~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~la~~~~~~ 402 (538)
....+. ++...++ ++.|...+.+++. ..| .........+..+...
T Consensus 132 -~~~~~~~~~~~~~~----~~~a~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~ 180 (291)
T COG0457 132 -EALLALGALYELGD----YEEALELYEKALE--------------------------LDPELNELAEALLALGALLEAL 180 (291)
T ss_pred -HHHHHHHHHHHcCC----HHHHHHHHHHHHh--------------------------cCCCccchHHHHHHhhhHHHHh
Confidence 122222 5555566 8888888888866 333 3455566666668889
Q ss_pred CChHHHHHHHHHHHhcCCC-CchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCchHHHHHHHHHHHHccCHHHHHHHHH
Q 009278 403 QKYPEAIQHYTESLRRNPK-DPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQ 481 (538)
Q Consensus 403 ~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 481 (538)
++++.|+..+.+++...+. ....+..++.++...+++..|+..+..++...|.....+..++..+...|.++++...+.
T Consensus 181 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (291)
T COG0457 181 GRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALE 260 (291)
T ss_pred cCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHH
Confidence 9999999999999999998 689999999999999999999999999999999877888888888888888999999999
Q ss_pred HHhccCCC
Q 009278 482 EGLKHDPQ 489 (538)
Q Consensus 482 ~al~~~p~ 489 (538)
+++...|.
T Consensus 261 ~~~~~~~~ 268 (291)
T COG0457 261 KALELDPD 268 (291)
T ss_pred HHHHhCcc
Confidence 99999997
No 187
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.90 E-value=3.7e-08 Score=90.18 Aligned_cols=109 Identities=21% Similarity=0.231 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHcCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhc
Q 009278 373 KAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIEL 452 (538)
Q Consensus 373 ~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 452 (538)
.|+..+++..+.+| ++...++.++...++..+|+..+.+++...|.+..++...+..+...++++.|+...++++..
T Consensus 187 ~ai~lle~L~~~~p---ev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~l 263 (395)
T PF09295_consen 187 EAIELLEKLRERDP---EVAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVEL 263 (395)
T ss_pred HHHHHHHHHHhcCC---cHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 33333333333554 466778999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHHHccCHHHHHHHHHHHh
Q 009278 453 DPTFSKGYTRKGAIQFFLKEYDKALETYQEGL 484 (538)
Q Consensus 453 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 484 (538)
.|++...|+.|+.+|...|++++|+..++.+=
T Consensus 264 sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 264 SPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 99999999999999999999999998887543
No 188
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.89 E-value=5.8e-08 Score=81.89 Aligned_cols=105 Identities=17% Similarity=0.192 Sum_probs=97.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCC---chhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCc---hHHHHHHHH
Q 009278 392 EREKGNEFFKQQKYPEAIQHYTESLRRNPKD---PRTYSNRAACYTKLGAMPEGLKDADKCIELDPTF---SKGYTRKGA 465 (538)
Q Consensus 392 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~ 465 (538)
.+..|.-++..|+|..|...|..-++..|++ +.+++.||.+++.+|+++.|...|..+++-.|++ |++++.+|.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 7888999999999999999999999999986 6899999999999999999999999999987665 678999999
Q ss_pred HHHHccCHHHHHHHHHHHhccCCCCHHHHHH
Q 009278 466 IQFFLKEYDKALETYQEGLKHDPQNQELLDG 496 (538)
Q Consensus 466 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 496 (538)
+...+|+.++|...|+++++..|+.+.+...
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~YP~t~aA~~A 254 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKRYPGTDAAKLA 254 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 9999999999999999999999998876543
No 189
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.87 E-value=7e-08 Score=73.27 Aligned_cols=109 Identities=23% Similarity=0.326 Sum_probs=96.6
Q ss_pred CchHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC---chhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCch---HHH
Q 009278 387 KIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKD---PRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFS---KGY 460 (538)
Q Consensus 387 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~ 460 (538)
..+..++.-|.-.+..|+|.+|++.|+.+....|.. ..+.+.+|.+|+..|++++|+..+++-++++|.++ .++
T Consensus 8 ~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~ 87 (142)
T PF13512_consen 8 KSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAY 87 (142)
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 346678889999999999999999999999998865 46889999999999999999999999999998875 478
Q ss_pred HHHHHHHHHccC---------------HHHHHHHHHHHhccCCCCHHHHH
Q 009278 461 TRKGAIQFFLKE---------------YDKALETYQEGLKHDPQNQELLD 495 (538)
Q Consensus 461 ~~l~~~~~~~g~---------------~~~A~~~~~~al~~~p~~~~~~~ 495 (538)
+..|.+++.+.. ..+|...|++.+...|++..+-.
T Consensus 88 Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~d 137 (142)
T PF13512_consen 88 YMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAAD 137 (142)
T ss_pred HHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHHH
Confidence 999999998877 88999999999999999876543
No 190
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.87 E-value=6.1e-08 Score=72.61 Aligned_cols=96 Identities=21% Similarity=0.109 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC---chhHhHHHHHHHHhCCchhHHHHHHHHHhcCCC---chHHHHHH
Q 009278 390 DEEREKGNEFFKQQKYPEAIQHYTESLRRNPKD---PRTYSNRAACYTKLGAMPEGLKDADKCIELDPT---FSKGYTRK 463 (538)
Q Consensus 390 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~l 463 (538)
.+++.+|.++-..|+.++|+.+|++++...... ..++..+|.++..+|++++|+..+++++...|+ +......+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 567889999999999999999999999875543 468899999999999999999999999999888 77788889
Q ss_pred HHHHHHccCHHHHHHHHHHHhc
Q 009278 464 GAIQFFLKEYDKALETYQEGLK 485 (538)
Q Consensus 464 ~~~~~~~g~~~~A~~~~~~al~ 485 (538)
+.++...|+.++|+..+-.++.
T Consensus 82 Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999988774
No 191
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.85 E-value=1.5e-06 Score=68.02 Aligned_cols=155 Identities=15% Similarity=0.144 Sum_probs=123.2
Q ss_pred HHHHHhCCHHHHHHHHHHHHHccccchhhHHHHHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCChhHHHhhhhH
Q 009278 292 AVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEA 371 (538)
Q Consensus 292 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 371 (538)
....+.=+++....-..+.+...|.. .-.+.++.....+|+ +.+|...|++++.-
T Consensus 64 ~a~~q~ldP~R~~Rea~~~~~~ApTv--------qnr~rLa~al~elGr----~~EA~~hy~qalsG------------- 118 (251)
T COG4700 64 MALQQKLDPERHLREATEELAIAPTV--------QNRYRLANALAELGR----YHEAVPHYQQALSG------------- 118 (251)
T ss_pred HHHHHhcChhHHHHHHHHHHhhchhH--------HHHHHHHHHHHHhhh----hhhhHHHHHHHhcc-------------
Confidence 33344446666666666666767763 445566666666667 99999999998873
Q ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC--CchhHhHHHHHHHHhCCchhHHHHHHHH
Q 009278 372 EKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPK--DPRTYSNRAACYTKLGAMPEGLKDADKC 449 (538)
Q Consensus 372 ~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~a 449 (538)
....++..+..++...+..+++..|...+++..+.+|. .+.....+|+++...|++.+|...|+.+
T Consensus 119 ------------~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a 186 (251)
T COG4700 119 ------------IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVA 186 (251)
T ss_pred ------------ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHH
Confidence 55678888899999999999999999999999998885 5788889999999999999999999999
Q ss_pred HhcCCCchHHHHHHHHHHHHccCHHHHHHHHHHHh
Q 009278 450 IELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGL 484 (538)
Q Consensus 450 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 484 (538)
+...|+ +.+....+..+.++|+..+|..-+..+.
T Consensus 187 ~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 187 ISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 999887 7788888999999998887766655444
No 192
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.83 E-value=1e-07 Score=69.48 Aligned_cols=100 Identities=24% Similarity=0.322 Sum_probs=90.9
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHHHhccCCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCch----HHHHHHHH
Q 009278 3 DEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWS----KGYSRLGA 78 (538)
Q Consensus 3 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~ 78 (538)
..+-.+|..+-..|+.+.|++.|.+++...|..+.+|.+++.++.-+|+.++|+..+++++++..+.. .++...|.
T Consensus 44 ~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~ 123 (175)
T KOG4555|consen 44 RELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGL 123 (175)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHH
Confidence 45667899999999999999999999999999999999999999999999999999999999976543 47899999
Q ss_pred HHhhccCHHHHHHHHHhhhhcCCC
Q 009278 79 AHLGLQDYIEAVNSYKKGLDIDPN 102 (538)
Q Consensus 79 ~~~~~~~~~~A~~~~~~al~~~p~ 102 (538)
+|..+|+.+.|...|+.+-++...
T Consensus 124 lyRl~g~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 124 LYRLLGNDDAARADFEAAAQLGSK 147 (175)
T ss_pred HHHHhCchHHHHHhHHHHHHhCCH
Confidence 999999999999999998776543
No 193
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=98.82 E-value=6.6e-09 Score=93.71 Aligned_cols=119 Identities=29% Similarity=0.499 Sum_probs=113.2
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHHHHhccCCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHHHHH
Q 009278 1 MADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAH 80 (538)
Q Consensus 1 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 80 (538)
+|+.+..+|+.++..+.|+.|+..|.++|+++|+++..+.+++.++++.+++..|+..+.++++.+|....+|++.|.+.
T Consensus 3 ~a~e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~ 82 (476)
T KOG0376|consen 3 SAEELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAV 82 (476)
T ss_pred hhhhhhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHH
Confidence 46778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCHHHHHHHHHhhhhcCCCcHHHHhhHHHHHHHHhh
Q 009278 81 LGLQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASA 119 (538)
Q Consensus 81 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 119 (538)
...+++.+|...|+....+.|+++.+...+..+-....+
T Consensus 83 m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~ 121 (476)
T KOG0376|consen 83 MALGEFKKALLDLEKVKKLAPNDPDATRKIDECNKIVSE 121 (476)
T ss_pred HhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999988887766654
No 194
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.82 E-value=2.4e-05 Score=69.01 Aligned_cols=298 Identities=14% Similarity=0.077 Sum_probs=192.4
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHhccCCc--chHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCc-hHHHHHHHHHHhh
Q 009278 6 KAKGNAAFSSGDYEAAVRHFTEAISLSPD--NHVLYSNRSAAHASLHNYADALADAKKTVELKPDW-SKGYSRLGAAHLG 82 (538)
Q Consensus 6 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~ 82 (538)
...|.+....|+-..|.++-.++-..-.. .+-++..-+..-+..|+++.|.+-|+..+. +|.. .-.+-.|-.--..
T Consensus 88 LStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr 166 (531)
T COG3898 88 LSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQR 166 (531)
T ss_pred HhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHh
Confidence 34566677777777777777666543222 344555556666777888888877777654 3322 1222222223345
Q ss_pred ccCHHHHHHHHHhhhhcCCCcHHHHhhHHHHHHHHhhcccCCCCCCCCcccccccCCchhhcccCCCCCCCcccHHHHHH
Q 009278 83 LQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRN 162 (538)
Q Consensus 83 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (538)
+|..+.|..+-+++....|.-+.++..........|+++ .++..
T Consensus 167 ~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd------------------------------------~AlkL 210 (531)
T COG3898 167 LGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWD------------------------------------GALKL 210 (531)
T ss_pred cccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChH------------------------------------HHHHH
Confidence 677777777777777777777777666655555555441 11111
Q ss_pred HHHhhh---cCCCchhhhhchHHHHHHHHHHHhhhcCCCCCCCccccccccCCCCCCCccccccCCCCCCCCCCccccHH
Q 009278 163 MMKDIQ---RNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEE 239 (538)
Q Consensus 163 ~~~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (538)
+..... ..++.
T Consensus 211 vd~~~~~~vie~~~------------------------------------------------------------------ 224 (531)
T COG3898 211 VDAQRAAKVIEKDV------------------------------------------------------------------ 224 (531)
T ss_pred HHHHHHHHhhchhh------------------------------------------------------------------
Confidence 110000 00000
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchh
Q 009278 240 EKEAKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRS 319 (538)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 319 (538)
-....+..+...+... -..+...|...-.+++++.|+....-..-+..+++.|+..++-.+++.+.+..|.- .
T Consensus 225 -----aeR~rAvLLtAkA~s~-ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP-~ 297 (531)
T COG3898 225 -----AERSRAVLLTAKAMSL-LDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHP-D 297 (531)
T ss_pred -----HHHHHHHHHHHHHHHH-hcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCCh-H
Confidence 0001111111222222 23468889999999999999999999999999999999999999999999988852 2
Q ss_pred hHHHHHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHH
Q 009278 320 DFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEF 399 (538)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~ 399 (538)
. +..|...- . -+.++.-++++-. ...+.|++.+.....+...
T Consensus 298 i----a~lY~~ar-------~----gdta~dRlkRa~~-----------------------L~slk~nnaes~~~va~aA 339 (531)
T COG3898 298 I----ALLYVRAR-------S----GDTALDRLKRAKK-----------------------LESLKPNNAESSLAVAEAA 339 (531)
T ss_pred H----HHHHHHhc-------C----CCcHHHHHHHHHH-----------------------HHhcCccchHHHHHHHHHH
Confidence 1 22332221 1 4455555555443 2227889999999999999
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCchhHhHHHHHHHHh-CCchhHHHHHHHHHhc
Q 009278 400 FKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKL-GAMPEGLKDADKCIEL 452 (538)
Q Consensus 400 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~al~~ 452 (538)
+..|++..|..--+.+....|. ..++..++.+-... |+-.++..++-++++-
T Consensus 340 lda~e~~~ARa~Aeaa~r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 340 LDAGEFSAARAKAEAAAREAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HhccchHHHHHHHHHHhhhCch-hhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 9999999999999999988885 45666778776655 9999999999999875
No 195
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.81 E-value=5.7e-05 Score=69.65 Aligned_cols=417 Identities=8% Similarity=-0.008 Sum_probs=228.0
Q ss_pred HHHhccCCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHHHHHhhccCHHHHHHHHHhhhhcCCCcHH
Q 009278 26 TEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNEA 105 (538)
Q Consensus 26 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~ 105 (538)
++-++.+|.|..+|+.+..-+..+ -+++..+.|++.+...|..+.+|.......+..++|+.....|.+.+...-+ .+
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLn-lD 87 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLN-LD 87 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh-Hh
Confidence 677889999999999998887777 9999999999999999999999999999999999999999999998865433 45
Q ss_pred HHhhHHHHHHHHhhcccCCCCCCCCcccccccCCchhhcccCCCCCCCcccHHHHHHHHHhhhcCCCchhhhhchHHHHH
Q 009278 106 LKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRNMMKDIQRNPNNLNLYLKDQRVMQ 185 (538)
Q Consensus 106 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 185 (538)
.|......-....... .........+++-.+..+..++.....|......+.
T Consensus 88 LW~lYl~YVR~~~~~~----------------------------~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~ 139 (656)
T KOG1914|consen 88 LWKLYLSYVRETKGKL----------------------------FGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLE 139 (656)
T ss_pred HHHHHHHHHHHHccCc----------------------------chHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHH
Confidence 5544333222221110 000001122333344444444443333322221111
Q ss_pred ----------------HHHHHHhhhcCCCCCCCccccccccCCCCCCCccccccCCCCCCCCCCccccHHHHHHHHhHHH
Q 009278 186 ----------------ALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKEAKERKEK 249 (538)
Q Consensus 186 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (538)
....+....... - .-+..+-.--..-...
T Consensus 140 ~vea~gk~ee~QRI~~vRriYqral~tP------------------m-----------------~nlEkLW~DY~~fE~~ 184 (656)
T KOG1914|consen 140 GVEAVGKYEENQRITAVRRIYQRALVTP------------------M-----------------HNLEKLWKDYEAFEQE 184 (656)
T ss_pred cccccccHHHHHHHHHHHHHHHHHhcCc------------------c-----------------ccHHHHHHHHHHHHHH
Confidence 111111111000 0 0000000000000111
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhh-------CCC----C-------HHHHHHHHHHHHHh------CC--HHHH
Q 009278 250 ALKEKEAGNAAYKKKEFEKAIEHYSSALEL-------DDE----D-------ISYLTNRAAVYLEM------GK--YEEC 303 (538)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-------~p~----~-------~~~~~~la~~~~~~------~~--~~~A 303 (538)
.......-.+--....|..|...+++.... +|. . .+.|.++...-... |. -..-
T Consensus 185 IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv 264 (656)
T KOG1914|consen 185 INIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRV 264 (656)
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcccccccHHHHHH
Confidence 111111111222344566666666655432 111 1 11222222111110 11 1122
Q ss_pred HHHHHHHHHccccchhhHHHHHHHHHHhHH-------HHHHhhhcccChhHHHHHHHHHHhcCCChh--HHHhhh-----
Q 009278 304 IKDCDKAVERGRELRSDFKMIARALTRKGT-------ALVKMAKCSKDYEPAIETFQKALTEHRNPD--TLKKLN----- 369 (538)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~----- 369 (538)
.-.+++++..-+-++..|...+..+...+. .-..... -+++..+|++++....... ++....
T Consensus 265 ~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~----t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~ 340 (656)
T KOG1914|consen 265 MYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSL----TDEAASIYERAIEGLLKENKLLYFALADYEES 340 (656)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhh----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 334555665555555555544444444443 3333334 6677777777776332211 111111
Q ss_pred -----hHHHHHHHHHHHHHcCCCch-HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHhHHHHH-HHHhCCchhH
Q 009278 370 -----EAEKAKKELEQQEIFDPKIA-DEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAAC-YTKLGAMPEG 442 (538)
Q Consensus 370 -----~~~~a~~~~~~~~~~~~~~~-~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~-~~~~~~~~~A 442 (538)
+.+..-..+++++.....++ -+|..+-..-.+..-...|..+|.++-+..-....++..-|.+ |...++..-|
T Consensus 341 ~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~A 420 (656)
T KOG1914|consen 341 RYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETA 420 (656)
T ss_pred hcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHH
Confidence 23333444555554433222 2344444444555567778888888776544334555555554 6678888999
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHHccCHHHHHHHHHHHhcc--CCC-CHHHHHHHHHHHHHhhhhccCC
Q 009278 443 LKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKH--DPQ-NQELLDGVRRCVQQINKAGRGE 511 (538)
Q Consensus 443 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~-~~~~~~~l~~~~~~~~~~~~a~ 511 (538)
...|+-.++..++.+..-......+...++-..|...|++++.. .|+ ...+|..+..-....|+.....
T Consensus 421 frIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~ 492 (656)
T KOG1914|consen 421 FRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSIL 492 (656)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHH
Confidence 99999999998888888888888888889989999999998876 433 3567777777666777665444
No 196
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.80 E-value=8.7e-05 Score=65.63 Aligned_cols=212 Identities=12% Similarity=0.113 Sum_probs=149.1
Q ss_pred HhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc---ccchhhHHHHHHHHHHhHHHHHH
Q 009278 261 YKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERG---RELRSDFKMIARALTRKGTALVK 337 (538)
Q Consensus 261 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 337 (538)
...|..+.|..+-+++-...|.-++++...-...+..|+++.|+++.+...... ++.... ..+..+...+. ..
T Consensus 165 qr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR--~rAvLLtAkA~--s~ 240 (531)
T COG3898 165 QRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAER--SRAVLLTAKAM--SL 240 (531)
T ss_pred HhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHH--HHHHHHHHHHH--HH
Confidence 357999999999999999999999999888888899999999999998766522 211100 00111111111 00
Q ss_pred hhhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009278 338 MAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLR 417 (538)
Q Consensus 338 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 417 (538)
.. .+...|...-. .+.++.|+....-..-+..++..|+..++-.+++.+.+
T Consensus 241 ld---adp~~Ar~~A~--------------------------~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK 291 (531)
T COG3898 241 LD---ADPASARDDAL--------------------------EANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWK 291 (531)
T ss_pred hc---CChHHHHHHHH--------------------------HHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHh
Confidence 00 11334444444 44448888888888899999999999999999999999
Q ss_pred cCCCCchhHhHHHHHHHHhCCchhHHHHHHHH---HhcCCCchHHHHHHHHHHHHccCHHHHHHHHHHHhccCCCCHHHH
Q 009278 418 RNPKDPRTYSNRAACYTKLGAMPEGLKDADKC---IELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELL 494 (538)
Q Consensus 418 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a---l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 494 (538)
..| +|. ++..|....--+.++.-++++ .++.|++....+..+..-+.-|++..|..--+.+....|... ++
T Consensus 292 ~eP-HP~----ia~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres-~~ 365 (531)
T COG3898 292 AEP-HPD----IALLYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRES-AY 365 (531)
T ss_pred cCC-ChH----HHHHHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhh-HH
Confidence 888 444 344555555555555555544 456899999999999999999999999999999999999754 44
Q ss_pred HHHHHHHH-HhhhhccCC
Q 009278 495 DGVRRCVQ-QINKAGRGE 511 (538)
Q Consensus 495 ~~l~~~~~-~~~~~~~a~ 511 (538)
..++.+.. ..|+..+..
T Consensus 366 lLlAdIeeAetGDqg~vR 383 (531)
T COG3898 366 LLLADIEEAETGDQGKVR 383 (531)
T ss_pred HHHHHHHhhccCchHHHH
Confidence 45555543 335555444
No 197
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.76 E-value=1.3e-07 Score=86.77 Aligned_cols=116 Identities=19% Similarity=0.217 Sum_probs=106.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCchHHHHHHHHHHHHccCH
Q 009278 394 EKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEY 473 (538)
Q Consensus 394 ~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 473 (538)
.+-.++...++++.|+..+++..+.+| ++...++.++...++-.+|+..+.+++...|.+...+...+..+...|++
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~p---ev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~ 250 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERDP---EVAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKY 250 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcCC---cHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCH
Confidence 344555667899999999999988876 46777999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhccCCC
Q 009278 474 DKALETYQEGLKHDPQNQELLDGVRRCVQQINKAGRGEL 512 (538)
Q Consensus 474 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~ 512 (538)
+.|+...+++.++.|++-..|..|+.+|..+|+++.|..
T Consensus 251 ~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALl 289 (395)
T PF09295_consen 251 ELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALL 289 (395)
T ss_pred HHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHH
Confidence 999999999999999999999999999999999999873
No 198
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.74 E-value=2.9e-06 Score=76.74 Aligned_cols=89 Identities=16% Similarity=0.153 Sum_probs=68.8
Q ss_pred HHHhhcCCHHHHHHHHHHHhccCCcchHHHHHHHHHHHhcCCHHHHHHHHHHH-hccCC------Cch--HHHHHHHHHH
Q 009278 10 NAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKT-VELKP------DWS--KGYSRLGAAH 80 (538)
Q Consensus 10 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a-l~~~p------~~~--~~~~~la~~~ 80 (538)
..+++..+...+...-+.+..+..+.+.++...+..++..|++.+|.+.+... +...| ... ..|.++|-++
T Consensus 214 r~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh 293 (696)
T KOG2471|consen 214 RFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIH 293 (696)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEe
Confidence 34566677777777777777777788899999999999999999999887653 22222 222 3467899999
Q ss_pred hhccCHHHHHHHHHhhhh
Q 009278 81 LGLQDYIEAVNSYKKGLD 98 (538)
Q Consensus 81 ~~~~~~~~A~~~~~~al~ 98 (538)
++.|.|.-+..+|.++++
T Consensus 294 ~~~~~y~~~~~~F~kAL~ 311 (696)
T KOG2471|consen 294 YQLGCYQASSVLFLKALR 311 (696)
T ss_pred eehhhHHHHHHHHHHHHH
Confidence 999999999999999987
No 199
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.73 E-value=5.5e-05 Score=73.98 Aligned_cols=223 Identities=13% Similarity=0.030 Sum_probs=156.5
Q ss_pred HhcCCHHHHHHHHHHHhccCCCchHHHHHHHHHHhhccCHHHHHHHHHhhhhcCCCcHHHHhhHHHHHHHHhhcccCCCC
Q 009278 47 ASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSP 126 (538)
Q Consensus 47 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~ 126 (538)
...+++.+|+..+.+.++..|+..-+....|.++.++|+.++|..+++..-...+++....
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tL------------------- 80 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTL------------------- 80 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHH-------------------
Confidence 4678999999999999999999999999999999999999999988776655555543322
Q ss_pred CCCCcccccccCCchhhcccCCCCCCCcccHHHHHHHHHhhhcCCCchhhhhchHHHHHHHHHHHhhhcCCCCCCCcccc
Q 009278 127 PADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRNMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEM 206 (538)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (538)
T Consensus 81 -------------------------------------------------------------------------------- 80 (932)
T KOG2053|consen 81 -------------------------------------------------------------------------------- 80 (932)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCCCCCCccccccCCCCCCCCCCccccHHHHHHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHH
Q 009278 207 QDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKEAKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISY 286 (538)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 286 (538)
-.+-.+|...++.++|..+|++++..+|. .+.
T Consensus 81 -----------------------------------------------q~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eel 112 (932)
T KOG2053|consen 81 -----------------------------------------------QFLQNVYRDLGKLDEAVHLYERANQKYPS-EEL 112 (932)
T ss_pred -----------------------------------------------HHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHH
Confidence 22345677889999999999999999999 888
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHHHHHHHhHHHHHHhhhc-----ccChhHHHHHHHHHHhcC-C
Q 009278 287 LTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKC-----SKDYEPAIETFQKALTEH-R 360 (538)
Q Consensus 287 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~A~~~~~~~~~~~-~ 360 (538)
...+-.+|.+.+.|.+-.+.--+..+..|+.+-.+.. ....+....... .--..-|....++.+... +
T Consensus 113 l~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWs------V~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk 186 (932)
T KOG2053|consen 113 LYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWS------VISLILQSIFSENELLDPILLALAEKMVQKLLEKKGK 186 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHH------HHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCc
Confidence 8889999999999887776666666677776433221 111111111110 000223444555555544 2
Q ss_pred Ch---------hHHHhhhhHHHHHHHHH-HHHH-cCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 009278 361 NP---------DTLKKLNEAEKAKKELE-QQEI-FDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKD 422 (538)
Q Consensus 361 ~~---------~~~~~~~~~~~a~~~~~-~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~ 422 (538)
-. .++..++.+++|...+. .... ..+.+...-......+...++|.+-.+...+++...+++
T Consensus 187 ~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~Dd 259 (932)
T KOG2053|consen 187 IESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGNDD 259 (932)
T ss_pred cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCcc
Confidence 11 14566788888888873 3333 344445555566777788888888888888888888876
No 200
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=8e-08 Score=78.45 Aligned_cols=104 Identities=25% Similarity=0.356 Sum_probs=94.2
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHHHhcc--------CCcc----------hHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 009278 3 DEAKAKGNAAFSSGDYEAAVRHFTEAISL--------SPDN----------HVLYSNRSAAHASLHNYADALADAKKTVE 64 (538)
Q Consensus 3 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~----------~~~~~~la~~~~~~g~~~~A~~~~~~al~ 64 (538)
..+...|+.+|..|+|.+|...|+.|+.. .|.+ ...+.++..|++..|+|-++++.+..++.
T Consensus 179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~ 258 (329)
T KOG0545|consen 179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILR 258 (329)
T ss_pred HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHh
Confidence 46789999999999999999999998753 3443 36788999999999999999999999999
Q ss_pred cCCCchHHHHHHHHHHhhccCHHHHHHHHHhhhhcCCCcHHH
Q 009278 65 LKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNEAL 106 (538)
Q Consensus 65 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 106 (538)
.+|.+..+|+..|.++...-+..+|...|.++++++|.-..+
T Consensus 259 ~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasv 300 (329)
T KOG0545|consen 259 HHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASV 300 (329)
T ss_pred cCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHH
Confidence 999999999999999999999999999999999999986554
No 201
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=6.1e-08 Score=82.88 Aligned_cols=105 Identities=40% Similarity=0.597 Sum_probs=95.6
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHHHhccC---Cc-chHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHH
Q 009278 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLS---PD-NHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLG 77 (538)
Q Consensus 2 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~---p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 77 (538)
|+.+...|+.++..++|..|+..|.+.|... |+ +...|.++|-|.+.+|+|..|+..+.+++.++|.+..++++-+
T Consensus 81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~A 160 (390)
T KOG0551|consen 81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGA 160 (390)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhh
Confidence 6789999999999999999999999999874 33 5678999999999999999999999999999999999999999
Q ss_pred HHHhhccCHHHHHHHHHhhhhcCCCcHHH
Q 009278 78 AAHLGLQDYIEAVNSYKKGLDIDPNNEAL 106 (538)
Q Consensus 78 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 106 (538)
.|++.+.++.+|..+.+..+.++-....+
T Consensus 161 kc~~eLe~~~~a~nw~ee~~~~d~e~K~~ 189 (390)
T KOG0551|consen 161 KCLLELERFAEAVNWCEEGLQIDDEAKKA 189 (390)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHHHHH
Confidence 99999999999999999998876554443
No 202
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.69 E-value=3.2e-06 Score=61.94 Aligned_cols=105 Identities=22% Similarity=0.230 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHHHHH
Q 009278 249 KALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARAL 328 (538)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (538)
....+-..|..+...|+.+.|++.|.+++.+.|..+.++.+.+..+.-+|+.++|++.+++++++.......- ..++
T Consensus 42 ~S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trta---cqa~ 118 (175)
T KOG4555|consen 42 ASRELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTA---CQAF 118 (175)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHH---HHHH
Confidence 3445566788899999999999999999999999999999999999999999999999999999876543332 7889
Q ss_pred HHhHHHHHHhhhcccChhHHHHHHHHHHhcCC
Q 009278 329 TRKGTALVKMAKCSKDYEPAIETFQKALTEHR 360 (538)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 360 (538)
...|.+|...|+ -+.|...|..+.++..
T Consensus 119 vQRg~lyRl~g~----dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 119 VQRGLLYRLLGN----DDAARADFEAAAQLGS 146 (175)
T ss_pred HHHHHHHHHhCc----hHHHHHhHHHHHHhCC
Confidence 999999999999 9999999999988554
No 203
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.68 E-value=1.1e-05 Score=63.27 Aligned_cols=158 Identities=15% Similarity=0.135 Sum_probs=125.6
Q ss_pred HHHhhcCCHHHHHHHHHHHhccCCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhc-cCCCchHHHHHHHHHHhhccCHHH
Q 009278 10 NAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVE-LKPDWSKGYSRLGAAHLGLQDYIE 88 (538)
Q Consensus 10 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~la~~~~~~~~~~~ 88 (538)
...-+.=|.+.+.....+.+...|. ..-.+.+|..+..+|++.+|...|++++. +..+++..++.++...+..+++..
T Consensus 64 ~a~~q~ldP~R~~Rea~~~~~~ApT-vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~ 142 (251)
T COG4700 64 MALQQKLDPERHLREATEELAIAPT-VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAA 142 (251)
T ss_pred HHHHHhcChhHHHHHHHHHHhhchh-HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHH
Confidence 3344455666777777777777775 46678899999999999999999999875 566788889999999999999999
Q ss_pred HHHHHHhhhhcCCCcHHHHhhHHHHHHHHhhcccCCCCCCCCcccccccCCchhhcccCCCCCCCcccHHHHHHHHHhhh
Q 009278 89 AVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRNMMKDIQ 168 (538)
Q Consensus 89 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 168 (538)
|...+++..+.+|...
T Consensus 143 a~~tLe~l~e~~pa~r---------------------------------------------------------------- 158 (251)
T COG4700 143 AQQTLEDLMEYNPAFR---------------------------------------------------------------- 158 (251)
T ss_pred HHHHHHHHhhcCCccC----------------------------------------------------------------
Confidence 9999999988876521
Q ss_pred cCCCchhhhhchHHHHHHHHHHHhhhcCCCCCCCccccccccCCCCCCCccccccCCCCCCCCCCccccHHHHHHHHhHH
Q 009278 169 RNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKEAKERKE 248 (538)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (538)
T Consensus 159 -------------------------------------------------------------------------------- 158 (251)
T COG4700 159 -------------------------------------------------------------------------------- 158 (251)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Q 009278 249 KALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVER 313 (538)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 313 (538)
.++.....|..+...|.+.+|...|+.+++..|+ +.+....+..+..+|+.++|..-+..+.+.
T Consensus 159 ~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~ 222 (251)
T COG4700 159 SPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVDT 222 (251)
T ss_pred CCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 1223456788899999999999999999999886 567777888999999888887776665553
No 204
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.67 E-value=1.8e-07 Score=73.35 Aligned_cols=96 Identities=25% Similarity=0.330 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHhccCCcchHHHHHHHHHHHhcCC----------HHHHHHHHHHHhccCCCchHHHHHHHHHHhhccC--
Q 009278 18 YEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHN----------YADALADAKKTVELKPDWSKGYSRLGAAHLGLQD-- 85 (538)
Q Consensus 18 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~-- 85 (538)
|+.|.+.++.....+|.+++.+++-|.+++.+.+ +++|+.-|++++.++|+...+++.+|.+|..++.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 7889999999999999999999999988877643 5778889999999999999999999999987653
Q ss_pred ---------HHHHHHHHHhhhhcCCCcHHHHhhHHHH
Q 009278 86 ---------YIEAVNSYKKGLDIDPNNEALKSGLADA 113 (538)
Q Consensus 86 ---------~~~A~~~~~~al~~~p~~~~~~~~l~~~ 113 (538)
|++|..+|+++...+|++...+..|...
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMA 123 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 7899999999999999999887777655
No 205
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.67 E-value=9.6e-08 Score=86.80 Aligned_cols=69 Identities=19% Similarity=0.131 Sum_probs=65.2
Q ss_pred cCCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchHH---HHHHHHHHhhccCHHHHHHHHHhhhhc
Q 009278 31 LSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKG---YSRLGAAHLGLQDYIEAVNSYKKGLDI 99 (538)
Q Consensus 31 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~~~~~~A~~~~~~al~~ 99 (538)
.+|+++.+++++|.+|..+|+|++|+..|+++++++|++..+ |+++|.+|..+|++++|+.++++++++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 468889999999999999999999999999999999999855 999999999999999999999999997
No 206
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.66 E-value=9.3e-08 Score=86.90 Aligned_cols=69 Identities=19% Similarity=0.307 Sum_probs=62.2
Q ss_pred cCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchh---HhHHHHHHHHhCCchhHHHHHHHHHhc
Q 009278 384 FDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRT---YSNRAACYTKLGAMPEGLKDADKCIEL 452 (538)
Q Consensus 384 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~---~~~la~~~~~~~~~~~A~~~~~~al~~ 452 (538)
.+|+++..++++|.+|+..|+|++|+..|+++++++|++..+ |+++|.+|..+|++++|+.++++++++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 578889999999999999999999999999999999988754 999999999999999999999999987
No 207
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.65 E-value=3.7e-05 Score=62.88 Aligned_cols=187 Identities=18% Similarity=0.203 Sum_probs=135.1
Q ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhC-----CC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhh
Q 009278 247 KEKALKEKEAGNAAYKKKEFEKAIEHYSSALELD-----DE-DISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSD 320 (538)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-----p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 320 (538)
.+.++.+..-|..|...++|..|=..|.++-+.. .+ ....+...+.||. .+++.+|+.++++++++..+. ..
T Consensus 31 eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cyk-k~~~~eAv~cL~~aieIyt~~-Gr 108 (288)
T KOG1586|consen 31 EEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYK-KVDPEEAVNCLEKAIEIYTDM-GR 108 (288)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhh-ccChHHHHHHHHHHHHHHHhh-hH
Confidence 4567778888888888899999988888886542 12 2345555556654 459999999999999988764 33
Q ss_pred HHHHHHHHHHhHHHHHHh-hhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHH
Q 009278 321 FKMIARALTRKGTALVKM-AKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEF 399 (538)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~ 399 (538)
+..-+..+..+|.+|..- .+ +++|+.+|+.+-......+ ........+...+..-
T Consensus 109 f~~aAk~~~~iaEiyEsdl~d----~ekaI~~YE~Aae~yk~ee--------------------s~ssANKC~lKvA~ya 164 (288)
T KOG1586|consen 109 FTMAAKHHIEIAEIYESDLQD----FEKAIAHYEQAAEYYKGEE--------------------SVSSANKCLLKVAQYA 164 (288)
T ss_pred HHHHHhhhhhHHHHHhhhHHH----HHHHHHHHHHHHHHHcchh--------------------hhhhHHHHHHHHHHHH
Confidence 334466677788877665 66 8888888888877433221 1222234455667777
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCc-------hhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCchHH
Q 009278 400 FKQQKYPEAIQHYTESLRRNPKDP-------RTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKG 459 (538)
Q Consensus 400 ~~~~~~~~A~~~~~~al~~~~~~~-------~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 459 (538)
...++|.+|+..|+++....-+++ ..++..|.|++...+.-.+...+++..+++|.....
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~ds 231 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDS 231 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCccccc
Confidence 788999999999999887665554 345667888888889888889999999999986554
No 208
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.62 E-value=0.0004 Score=63.36 Aligned_cols=104 Identities=13% Similarity=0.095 Sum_probs=78.4
Q ss_pred hhHHHHHHHHHhhcC--CHHHHHHHHHHHhccCCcc---hHHHHHHHHHH-HhcCCHHHHHHHHHHHhccC---CCc---
Q 009278 2 ADEAKAKGNAAFSSG--DYEAAVRHFTEAISLSPDN---HVLYSNRSAAH-ASLHNYADALADAKKTVELK---PDW--- 69 (538)
Q Consensus 2 a~~~~~~g~~~~~~g--~~~~A~~~~~~al~~~p~~---~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~---p~~--- 69 (538)
++++...|..+...| +...++++++..+...|.+ +.....+|..+ ...++.+.|...++++..+. |..
T Consensus 7 a~aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydv 86 (629)
T KOG2300|consen 7 AEALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDV 86 (629)
T ss_pred HHHHHHHHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhh
Confidence 567778888888888 8888999998888887764 35566677654 45678888999988887654 332
Q ss_pred -hHHHHHHHHHHhhcc-CHHHHHHHHHhhhhcCCCcHH
Q 009278 70 -SKGYSRLGAAHLGLQ-DYIEAVNSYKKGLDIDPNNEA 105 (538)
Q Consensus 70 -~~~~~~la~~~~~~~-~~~~A~~~~~~al~~~p~~~~ 105 (538)
..+...++.+|.... .+..|...+++++++..+.+-
T Consensus 87 Kf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~ 124 (629)
T KOG2300|consen 87 KFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPY 124 (629)
T ss_pred hhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCch
Confidence 356777888888777 788888888888888766653
No 209
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.61 E-value=3.3e-06 Score=76.40 Aligned_cols=123 Identities=12% Similarity=0.044 Sum_probs=99.6
Q ss_pred cCCCchHHHHHHHHHHHhcCChHHHHHHHHHH-HhcCCC--------CchhHhHHHHHHHHhCCchhHHHHHHHHHhc--
Q 009278 384 FDPKIADEEREKGNEFFKQQKYPEAIQHYTES-LRRNPK--------DPRTYSNRAACYTKLGAMPEGLKDADKCIEL-- 452 (538)
Q Consensus 384 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a-l~~~~~--------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-- 452 (538)
...+.+......+..++..|++.+|.+.+... +...|. ..-.|+++|.+++++|.|.-+..+|.+++..
T Consensus 235 ~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c 314 (696)
T KOG2471|consen 235 IAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSC 314 (696)
T ss_pred hcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHH
Confidence 55677888889999999999999999887653 222232 2345789999999999999999999999951
Q ss_pred -------CC---------CchHHHHHHHHHHHHccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhh
Q 009278 453 -------DP---------TFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDGVRRCVQQINK 506 (538)
Q Consensus 453 -------~p---------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 506 (538)
.| ..-...++.|..|...|+.-.|.++|.++....-.+|.+|..++.|...-.+
T Consensus 315 ~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima~~ 384 (696)
T KOG2471|consen 315 SQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMALQ 384 (696)
T ss_pred HHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhh
Confidence 11 2345789999999999999999999999999999999999999999765443
No 210
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.59 E-value=4.5e-07 Score=71.12 Aligned_cols=107 Identities=17% Similarity=0.250 Sum_probs=53.8
Q ss_pred hHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHhHHHHHHHHhCCchhHHHHHHHH
Q 009278 370 EAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKC 449 (538)
Q Consensus 370 ~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 449 (538)
-++.|.+.++.....+|.+++.+++.|.++..+.++...- .....+++|+.-|+++
T Consensus 6 ~FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~------------------------es~~miedAisK~eeA 61 (186)
T PF06552_consen 6 FFEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGP------------------------ESKKMIEDAISKFEEA 61 (186)
T ss_dssp HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HH------------------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcc------------------------hHHHHHHHHHHHHHHH
Confidence 3555666666666666666666666666655443221000 0001123444445555
Q ss_pred HhcCCCchHHHHHHHHHHHHcc-----------CHHHHHHHHHHHhccCCCCHHHHHHHHHH
Q 009278 450 IELDPTFSKGYTRKGAIQFFLK-----------EYDKALETYQEGLKHDPQNQELLDGVRRC 500 (538)
Q Consensus 450 l~~~p~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 500 (538)
+.++|+..++++.+|.+|..++ .|++|..+|++|...+|+|...+..|..+
T Consensus 62 L~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 62 LKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMA 123 (186)
T ss_dssp HHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred HhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 5555555555555555554432 26677777777777888777666555444
No 211
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.58 E-value=3.8e-08 Score=68.93 Aligned_cols=63 Identities=30% Similarity=0.507 Sum_probs=34.3
Q ss_pred hhHhHHHHHHHHhCCchhHHHHHHHHHhc---C----CCchHHHHHHHHHHHHccCHHHHHHHHHHHhcc
Q 009278 424 RTYSNRAACYTKLGAMPEGLKDADKCIEL---D----PTFSKGYTRKGAIQFFLKEYDKALETYQEGLKH 486 (538)
Q Consensus 424 ~~~~~la~~~~~~~~~~~A~~~~~~al~~---~----p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 486 (538)
.++.++|.+|..+|++++|+.+|++++.+ . |....++.++|.++..+|++++|++++++++++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 44555555555555555555555555543 1 112345566666666666666666666666543
No 212
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=98.58 E-value=2.6e-05 Score=72.39 Aligned_cols=107 Identities=17% Similarity=0.140 Sum_probs=95.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCC-chhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCchHHHHHHHHHHHHccCHH
Q 009278 396 GNEFFKQQKYPEAIQHYTESLRRNPKD-PRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYD 474 (538)
Q Consensus 396 a~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 474 (538)
|......|+...|+.++..++...|.. ...+.+++.+...-|....|-.++.+++.+....|-.++.+|.++..+.+.+
T Consensus 614 glywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~ 693 (886)
T KOG4507|consen 614 GLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNIS 693 (886)
T ss_pred cceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhH
Confidence 444456899999999999999998865 3467899999999999999999999999999888999999999999999999
Q ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHH
Q 009278 475 KALETYQEGLKHDPQNQELLDGVRRCVQ 502 (538)
Q Consensus 475 ~A~~~~~~al~~~p~~~~~~~~l~~~~~ 502 (538)
.|++.|+.|+.++|+++.+...|..+..
T Consensus 694 ~a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 694 GALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 9999999999999999999888776654
No 213
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.57 E-value=2.3e-05 Score=64.53 Aligned_cols=186 Identities=17% Similarity=0.186 Sum_probs=111.6
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCChhHHHhhh
Q 009278 290 RAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLN 369 (538)
Q Consensus 290 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 369 (538)
-+.+|...++|++|..++.++.+-..++...+ .-+..+-..+.....+.. +.++..+|+++.. .+...|
T Consensus 37 AAvafRnAk~feKakdcLlkA~~~yEnnrslf-hAAKayEqaamLake~~k----lsEvvdl~eKAs~------lY~E~G 105 (308)
T KOG1585|consen 37 AAVAFRNAKKFEKAKDCLLKASKGYENNRSLF-HAAKAYEQAAMLAKELSK----LSEVVDLYEKASE------LYVECG 105 (308)
T ss_pred HHHHHHhhccHHHHHHHHHHHHHHHHhcccHH-HHHHHHHHHHHHHHHHHH----hHHHHHHHHHHHH------HHHHhC
Confidence 35556666677777777777765544443222 225555555555556666 6777777776665 222333
Q ss_pred hHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC------chhHhHHHHHHHHhCCchhHH
Q 009278 370 EAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKD------PRTYSNRAACYTKLGAMPEGL 443 (538)
Q Consensus 370 ~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~~~~~~A~ 443 (538)
..+.|-.. ...+--.....++++|+.+|++++.+...+ .+.+-..++++.+..++++|-
T Consensus 106 spdtAAma---------------leKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa 170 (308)
T KOG1585|consen 106 SPDTAAMA---------------LEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAA 170 (308)
T ss_pred CcchHHHH---------------HHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHH
Confidence 33222222 222333455667888888888887654332 345566777888888888887
Q ss_pred HHHHHHHhc------CCCchHHHHHHHHHHHHccCHHHHHHHHHHHhcc----CCCCHHHHHHHHHHH
Q 009278 444 KDADKCIEL------DPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKH----DPQNQELLDGVRRCV 501 (538)
Q Consensus 444 ~~~~~al~~------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~ 501 (538)
..+.+-... .|+....+.....+++...+|..|..+|+...++ .|++.....+|-..|
T Consensus 171 ~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay 238 (308)
T KOG1585|consen 171 TAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY 238 (308)
T ss_pred HHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh
Confidence 777654432 2343445555556666777899999888887665 355555555555544
No 214
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.57 E-value=0.00011 Score=71.36 Aligned_cols=233 Identities=15% Similarity=0.123 Sum_probs=139.9
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHHHHHHHh
Q 009278 252 KEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRK 331 (538)
Q Consensus 252 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (538)
.|++.+..+...++.+.|+++|+++- .. .-.+...+.++..+++.|-+-.. + ...|...
T Consensus 860 Tyy~yA~~Lear~Di~~AleyyEK~~-----~h-----afev~rmL~e~p~~~e~Yv~~~~----d-------~~L~~WW 918 (1416)
T KOG3617|consen 860 TYYNYAKYLEARRDIEAALEYYEKAG-----VH-----AFEVFRMLKEYPKQIEQYVRRKR----D-------ESLYSWW 918 (1416)
T ss_pred hHHHHHHHHHhhccHHHHHHHHHhcC-----Ch-----HHHHHHHHHhChHHHHHHHHhcc----c-------hHHHHHH
Confidence 45666677777777777777777641 10 01122223334444444432111 1 1334444
Q ss_pred HHHHHHhhhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcCChHHHHHH
Q 009278 332 GTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQH 411 (538)
Q Consensus 332 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 411 (538)
|......|+ .+.|+.+|..+-.......+.--+|+.++|-...+ ...+..+.+.+|..|...|++.+|+..
T Consensus 919 gqYlES~Ge----mdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~-----esgd~AAcYhlaR~YEn~g~v~~Av~F 989 (1416)
T KOG3617|consen 919 GQYLESVGE----MDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAE-----ESGDKAACYHLARMYENDGDVVKAVKF 989 (1416)
T ss_pred HHHHhcccc----hHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHH-----hcccHHHHHHHHHHhhhhHHHHHHHHH
Confidence 555556666 99999999888776655555566677777766553 346677888999999999999999999
Q ss_pred HHHHH------hcCCCC--------------chhHhHHHHHHHHhC-CchhHHHHHHHH------H--------------
Q 009278 412 YTESL------RRNPKD--------------PRTYSNRAACYTKLG-AMPEGLKDADKC------I-------------- 450 (538)
Q Consensus 412 ~~~al------~~~~~~--------------~~~~~~la~~~~~~~-~~~~A~~~~~~a------l-------------- 450 (538)
|.++- .+..++ +.-....+..|...| ..+.|...|.++ +
T Consensus 990 fTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~l 1069 (1416)
T KOG3617|consen 990 FTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDL 1069 (1416)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHH
Confidence 88763 222221 111223344444444 455555554332 1
Q ss_pred ---hcCC-CchHHHHHHHHHHHHccCHHHHHHHHHHH------hcc----------------CCC---------CHHHHH
Q 009278 451 ---ELDP-TFSKGYTRKGAIQFFLKEYDKALETYQEG------LKH----------------DPQ---------NQELLD 495 (538)
Q Consensus 451 ---~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a------l~~----------------~p~---------~~~~~~ 495 (538)
.++| .+|..+..-+..+....+|++|...+-.+ +++ .|. ...++.
T Consensus 1070 Ia~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLe 1149 (1416)
T KOG3617|consen 1070 IAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLE 1149 (1416)
T ss_pred HHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHH
Confidence 1233 35777777788888888999988765443 332 121 145778
Q ss_pred HHHHHHHHhhhhccCCCCh
Q 009278 496 GVRRCVQQINKAGRGELSP 514 (538)
Q Consensus 496 ~l~~~~~~~~~~~~a~~~~ 514 (538)
.++.+..+.|.+-.|..-|
T Consensus 1150 qvae~c~qQG~Yh~AtKKf 1168 (1416)
T KOG3617|consen 1150 QVAELCLQQGAYHAATKKF 1168 (1416)
T ss_pred HHHHHHHhccchHHHHHHH
Confidence 8888888888877665333
No 215
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.57 E-value=1.4e-05 Score=65.33 Aligned_cols=194 Identities=15% Similarity=0.145 Sum_probs=127.5
Q ss_pred HHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHHHHHHHhHHHHHHhh
Q 009278 260 AYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMA 339 (538)
Q Consensus 260 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (538)
+...+.+++|.++|.++- ..|....++..|-..|.++.+..-.... ....+..|...+.+|-+.
T Consensus 24 fgg~~k~eeAadl~~~Aa--------------n~yklaK~w~~AG~aflkaA~~h~k~~s-khDaat~YveA~~cykk~- 87 (288)
T KOG1586|consen 24 FGGSNKYEEAAELYERAA--------------NMYKLAKNWSAAGDAFLKAADLHLKAGS-KHDAATTYVEAANCYKKV- 87 (288)
T ss_pred cCCCcchHHHHHHHHHHH--------------HHHHHHHhHHHHHHHHHHHHHHHHhcCC-chhHHHHHHHHHHHhhcc-
Confidence 334567888888887763 3344444555555555544432221110 001144455555544333
Q ss_pred hcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhc-CChHHHHHHHHHHHhc
Q 009278 340 KCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQ-QKYPEAIQHYTESLRR 418 (538)
Q Consensus 340 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~al~~ 418 (538)
+ +.+|+.+++++++ ++..+|++..|-. .+..+|.+|... .++++|+.+|+++-+.
T Consensus 88 ~----~~eAv~cL~~aie------Iyt~~Grf~~aAk--------------~~~~iaEiyEsdl~d~ekaI~~YE~Aae~ 143 (288)
T KOG1586|consen 88 D----PEEAVNCLEKAIE------IYTDMGRFTMAAK--------------HHIEIAEIYESDLQDFEKAIAHYEQAAEY 143 (288)
T ss_pred C----hHHHHHHHHHHHH------HHHhhhHHHHHHh--------------hhhhHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 4 8888888888887 4555666554433 345677777765 8999999999999876
Q ss_pred CCCC------chhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCchH-------HHHHHHHHHHHccCHHHHHHHHHHHhc
Q 009278 419 NPKD------PRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSK-------GYTRKGAIQFFLKEYDKALETYQEGLK 485 (538)
Q Consensus 419 ~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~-------~~~~l~~~~~~~g~~~~A~~~~~~al~ 485 (538)
.... ...+...+..-..+++|.+|+..|+++....-+++- .++.-|.|++-..+.-.+...+++-.+
T Consensus 144 yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~ 223 (288)
T KOG1586|consen 144 YKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQE 223 (288)
T ss_pred HcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHh
Confidence 5432 235566677777899999999999999876554432 356678888888999999999999999
Q ss_pred cCCCCHHH
Q 009278 486 HDPQNQEL 493 (538)
Q Consensus 486 ~~p~~~~~ 493 (538)
++|...+.
T Consensus 224 ~dP~F~ds 231 (288)
T KOG1586|consen 224 LDPAFTDS 231 (288)
T ss_pred cCCccccc
Confidence 99976443
No 216
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.54 E-value=4.9e-05 Score=63.39 Aligned_cols=236 Identities=14% Similarity=0.092 Sum_probs=152.8
Q ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC-------------------HHHHHHHHHHHHHhCCHHHHHHHHH
Q 009278 248 EKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDED-------------------ISYLTNRAAVYLEMGKYEECIKDCD 308 (538)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-------------------~~~~~~la~~~~~~~~~~~A~~~~~ 308 (538)
+....|...-.++.+...+++|..-+.-.-+.+..+ .......|.+....|+..+.+.-+.
T Consensus 67 ~~lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~ 146 (366)
T KOG2796|consen 67 DSLQLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLH 146 (366)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 345566666677777788888877766655543211 1223444666677777777766555
Q ss_pred HHHHccccchhhHHHHHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCC--hhHHHhhhhHHHHHHHHHHHHHcC-
Q 009278 309 KAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRN--PDTLKKLNEAEKAKKELEQQEIFD- 385 (538)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~- 385 (538)
.....-.+. ..-...+. . .+..++.+++-+..... ..++..++.+.-.+..+.+.++.+
T Consensus 147 ~L~~~V~~i--------i~~~e~~~------~----~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~ 208 (366)
T KOG2796|consen 147 KLKTVVSKI--------LANLEQGL------A----EESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYP 208 (366)
T ss_pred HHHHHHHHH--------HHHHHhcc------c----hhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCC
Confidence 443321110 00000000 0 12222222222211100 123334444444555555555555
Q ss_pred CCchHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC------CCchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCchHH
Q 009278 386 PKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNP------KDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKG 459 (538)
Q Consensus 386 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 459 (538)
|..+.....+|.+-++.|+.+.|..+|+++-+... ....+..+.+.+|...+++.+|...+.+++..+|.++.+
T Consensus 209 e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a 288 (366)
T KOG2796|consen 209 EQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVA 288 (366)
T ss_pred cccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhh
Confidence 67888889999999999999999999996653321 234567788889999999999999999999999999999
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHhccCCCC---HHHHHHHHHHH
Q 009278 460 YTRKGAIQFFLKEYDKALETYQEGLKHDPQN---QELLDGVRRCV 501 (538)
Q Consensus 460 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~ 501 (538)
..+.|.|+.-.|+..+|++.++.++...|.. ..+..+|...+
T Consensus 289 ~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~es~~~nL~tmy 333 (366)
T KOG2796|consen 289 NNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHESVLFNLTTMY 333 (366)
T ss_pred hchHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhHHHHHHHHH
Confidence 9999999999999999999999999999974 33444444443
No 217
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.52 E-value=5.5e-07 Score=62.99 Aligned_cols=73 Identities=32% Similarity=0.514 Sum_probs=61.5
Q ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHh
Q 009278 281 DEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALT 357 (538)
Q Consensus 281 p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 357 (538)
|+-..++..+|.+|..+|++++|+.+|++++++.....+....++.++..+|.++...|+ +++|+.+++++++
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~----~~~A~~~~~~al~ 74 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGD----YEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCC----HHHHHHHHHHHHh
Confidence 344678899999999999999999999999987444444555568999999999999999 9999999999987
No 218
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=5.8e-07 Score=73.35 Aligned_cols=108 Identities=27% Similarity=0.418 Sum_probs=92.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCchHHHHHHHHHHHHccCH
Q 009278 394 EKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEY 473 (538)
Q Consensus 394 ~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 473 (538)
.-|..++...+|..|+.+|.++|.++|..+..|.+.+.|++++++++.+.....+++++.|+.+..++.+|.+......+
T Consensus 15 E~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~ 94 (284)
T KOG4642|consen 15 EQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGY 94 (284)
T ss_pred hccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccc
Confidence 45777888889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccC-----CCCHHHHHHHHHHH
Q 009278 474 DKALETYQEGLKHD-----PQNQELLDGVRRCV 501 (538)
Q Consensus 474 ~~A~~~~~~al~~~-----p~~~~~~~~l~~~~ 501 (538)
.+|+..+.++..+. |.-.++...|..+.
T Consensus 95 ~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak 127 (284)
T KOG4642|consen 95 DEAIKVLQRAYSLLREQPFTFGDDIPKALRDAK 127 (284)
T ss_pred cHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHH
Confidence 99999999996542 22244555555543
No 219
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.41 E-value=0.00014 Score=60.83 Aligned_cols=143 Identities=13% Similarity=0.165 Sum_probs=116.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhccC-CCchHHHHHHHHHHhhccCHHHHHHHHHhhhhcCCCcHHHHhhHHHHHH
Q 009278 37 VLYSNRSAAHASLHNYADALADAKKTVELK-PDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNEALKSGLADAKA 115 (538)
Q Consensus 37 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 115 (538)
.+.+.+..|+...|.|.-.+..+.+.++.+ |..+.....+|.+.++.|+.+.|..+|+++-+....-
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL------------ 245 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKL------------ 245 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhh------------
Confidence 566778888888999999999999999888 5667777889999999999998888888654211000
Q ss_pred HHhhcccCCCCCCCCcccccccCCchhhcccCCCCCCCcccHHHHHHHHHhhhcCCCchhhhhchHHHHHHHHHHHhhhc
Q 009278 116 AASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRNMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKF 195 (538)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (538)
T Consensus 246 -------------------------------------------------------------------------------- 245 (366)
T KOG2796|consen 246 -------------------------------------------------------------------------------- 245 (366)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCccccccccCCCCCCCccccccCCCCCCCCCCccccHHHHHHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Q 009278 196 KGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKEAKERKEKALKEKEAGNAAYKKKEFEKAIEHYSS 275 (538)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 275 (538)
........+..+.+.++...+++..|...|.+
T Consensus 246 ------------------------------------------------~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~ 277 (366)
T KOG2796|consen 246 ------------------------------------------------DGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTE 277 (366)
T ss_pred ------------------------------------------------hccchhHHHHhhhhhheecccchHHHHHHHhh
Confidence 00012334456668888999999999999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchh
Q 009278 276 ALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRS 319 (538)
Q Consensus 276 al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 319 (538)
++..+|.++.+..+.|.|....|+...|++.++.++...|....
T Consensus 278 i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l 321 (366)
T KOG2796|consen 278 ILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYL 321 (366)
T ss_pred ccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccch
Confidence 99999999999999999999999999999999999999997643
No 220
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=98.40 E-value=9.8e-07 Score=80.07 Aligned_cols=114 Identities=28% Similarity=0.484 Sum_probs=105.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCchHHHHHHHHHHHHccC
Q 009278 393 REKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKE 472 (538)
Q Consensus 393 ~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 472 (538)
-.-+...+..+.|+.|+..|.++|+++|+++..+.+.+..+.+.+++..|+..+.++++.+|....+|+..|.+....+.
T Consensus 8 k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 8 KNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGE 87 (476)
T ss_pred hhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHH
Confidence 34566778889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhh
Q 009278 473 YDKALETYQEGLKHDPQNQELLDGVRRCVQQINK 506 (538)
Q Consensus 473 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 506 (538)
+.+|...|++...+.|+++.+...+..|-....+
T Consensus 88 ~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~ 121 (476)
T KOG0376|consen 88 FKKALLDLEKVKKLAPNDPDATRKIDECNKIVSE 121 (476)
T ss_pred HHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999888665543
No 221
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.39 E-value=6.9e-07 Score=53.90 Aligned_cols=41 Identities=17% Similarity=0.197 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHH
Q 009278 37 VLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLG 77 (538)
Q Consensus 37 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 77 (538)
.+++.+|..|..+|++++|+..|+++++.+|+++.+|..+|
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 34555555555555555555555555555555555555554
No 222
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=8.8e-06 Score=66.85 Aligned_cols=108 Identities=23% Similarity=0.333 Sum_probs=94.9
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHHh--------cCCCCc----------hhHhHHHHHHHHhCCchhHHHHHHHHH
Q 009278 389 ADEEREKGNEFFKQQKYPEAIQHYTESLR--------RNPKDP----------RTYSNRAACYTKLGAMPEGLKDADKCI 450 (538)
Q Consensus 389 ~~~~~~la~~~~~~~~~~~A~~~~~~al~--------~~~~~~----------~~~~~la~~~~~~~~~~~A~~~~~~al 450 (538)
..++...|+-++..|+|.+|...|..|+. ..|.++ ..+.+.+.|+...|+|-++++....++
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL 257 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL 257 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence 45677889999999999999999998863 245443 578899999999999999999999999
Q ss_pred hcCCCchHHHHHHHHHHHHccCHHHHHHHHHHHhccCCCCHHHHHH
Q 009278 451 ELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDG 496 (538)
Q Consensus 451 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 496 (538)
..+|.+..+++..|.+....=+..+|...|.++++++|.-..+...
T Consensus 258 ~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVsr 303 (329)
T KOG0545|consen 258 RHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVSR 303 (329)
T ss_pred hcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHHH
Confidence 9999999999999999999999999999999999999986555443
No 223
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.37 E-value=9.1e-07 Score=53.38 Aligned_cols=42 Identities=17% Similarity=0.170 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHhccCCCCHHHHHHHHH
Q 009278 458 KGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDGVRR 499 (538)
Q Consensus 458 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 499 (538)
.++..+|.+|...|++++|+..|+++++.+|+|+.++..++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 455566666666666666666666666666666666655553
No 224
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=98.33 E-value=0.0023 Score=58.26 Aligned_cols=95 Identities=7% Similarity=-0.062 Sum_probs=76.2
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHhccCCcch-----HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHHHH
Q 009278 5 AKAKGNAAFSSGDYEAAVRHFTEAISLSPDNH-----VLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAA 79 (538)
Q Consensus 5 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 79 (538)
+-.+|.++-.++++.+|...|.++.......+ +++.++-...+-+++.+.-...+-..-+..|..+...+..|.+
T Consensus 9 lc~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~L~ 88 (549)
T PF07079_consen 9 LCFQGFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKALV 88 (549)
T ss_pred HHHhhHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 34578999999999999999999987655543 4555565566667777777777777777789888888999999
Q ss_pred HhhccCHHHHHHHHHhhhhc
Q 009278 80 HLGLQDYIEAVNSYKKGLDI 99 (538)
Q Consensus 80 ~~~~~~~~~A~~~~~~al~~ 99 (538)
..+.+.+.+|++.+......
T Consensus 89 ~Y~~k~~~kal~~ls~w~~~ 108 (549)
T PF07079_consen 89 AYKQKEYRKALQALSVWKEQ 108 (549)
T ss_pred HHHhhhHHHHHHHHHHHHhh
Confidence 99999999999998776654
No 225
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.33 E-value=2.7e-07 Score=79.52 Aligned_cols=101 Identities=29% Similarity=0.490 Sum_probs=95.1
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHHHhccCCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHHHHHh
Q 009278 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHL 81 (538)
Q Consensus 2 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 81 (538)
|.....++...+..|++++|++.|..++.++|.....+..++.+++.+++...|+..|..++.++|+....|-..|....
T Consensus 114 a~e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~r 193 (377)
T KOG1308|consen 114 ANDKKVQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAER 193 (377)
T ss_pred HHHHHHHHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHH
Confidence 34556788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCHHHHHHHHHhhhhcCCC
Q 009278 82 GLQDYIEAVNSYKKGLDIDPN 102 (538)
Q Consensus 82 ~~~~~~~A~~~~~~al~~~p~ 102 (538)
.+|+|++|...+..+.+++-+
T Consensus 194 llg~~e~aa~dl~~a~kld~d 214 (377)
T KOG1308|consen 194 LLGNWEEAAHDLALACKLDYD 214 (377)
T ss_pred HhhchHHHHHHHHHHHhcccc
Confidence 999999999999999988654
No 226
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.25 E-value=0.00012 Score=60.42 Aligned_cols=207 Identities=16% Similarity=0.110 Sum_probs=133.8
Q ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhH
Q 009278 248 EKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDED------ISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDF 321 (538)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 321 (538)
..+..+..-+..|...++|++|..++.++.+-..++ ..++-..+.+...+..+.++..+++++..+.-++....
T Consensus 29 gaas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~Gspd 108 (308)
T KOG1585|consen 29 GAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPD 108 (308)
T ss_pred hhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcc
Confidence 356677778888999999999999999999665444 24455667777788889999999999887654332111
Q ss_pred HHHHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHh
Q 009278 322 KMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFK 401 (538)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~ 401 (538)
. -+.++-.-+. .....+ +++|+..|++++...... ++.. .-.+.+...+.++.+
T Consensus 109 t-AAmaleKAak-~lenv~----Pd~AlqlYqralavve~~------dr~~--------------ma~el~gk~sr~lVr 162 (308)
T KOG1585|consen 109 T-AAMALEKAAK-ALENVK----PDDALQLYQRALAVVEED------DRDQ--------------MAFELYGKCSRVLVR 162 (308)
T ss_pred h-HHHHHHHHHH-HhhcCC----HHHHHHHHHHHHHHHhcc------chHH--------------HHHHHHHHhhhHhhh
Confidence 0 0222222222 222233 777777777777632221 1111 123445567888899
Q ss_pred cCChHHHHHHHHHHHhc------CCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhc----CCCchHHHHHHHHHHHHcc
Q 009278 402 QQKYPEAIQHYTESLRR------NPKDPRTYSNRAACYTKLGAMPEGLKDADKCIEL----DPTFSKGYTRKGAIQFFLK 471 (538)
Q Consensus 402 ~~~~~~A~~~~~~al~~------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~~~g 471 (538)
..+|++|-..+.+-... .+.....+.....+|....+|..|..+++..-++ .|++..+.-+|-..| ..|
T Consensus 163 l~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~g 241 (308)
T KOG1585|consen 163 LEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEG 241 (308)
T ss_pred hHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccC
Confidence 99999998887765432 2333345666667777788999999999987765 345555665555443 467
Q ss_pred CHHHHHHHHH
Q 009278 472 EYDKALETYQ 481 (538)
Q Consensus 472 ~~~~A~~~~~ 481 (538)
+.++....+.
T Consensus 242 D~E~~~kvl~ 251 (308)
T KOG1585|consen 242 DIEEIKKVLS 251 (308)
T ss_pred CHHHHHHHHc
Confidence 7777766554
No 227
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=98.25 E-value=0.0047 Score=58.53 Aligned_cols=407 Identities=10% Similarity=0.002 Sum_probs=203.3
Q ss_pred HHHHHHHHHHhccCCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHHHHH-hhccCHHHHHHHHHhhh
Q 009278 19 EAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAH-LGLQDYIEAVNSYKKGL 97 (538)
Q Consensus 19 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~-~~~~~~~~A~~~~~~al 97 (538)
+.+...|...+...|.....|-..|..-.++|..+.+.+.|++++.--|.....|..+-... ...|+.+.-...|++|.
T Consensus 62 ~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~ 141 (577)
T KOG1258|consen 62 DALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAK 141 (577)
T ss_pred HHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 45566777888889998899999999999999999999999999999998888886654443 34567777777888887
Q ss_pred hcCCCc---HHHHhhHHHHHHHHhhcccCCCCCCCCcccccccCCchhhcccCCCCCCCcccHHHHHHHHHhhhcCCCch
Q 009278 98 DIDPNN---EALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRNMMKDIQRNPNNL 174 (538)
Q Consensus 98 ~~~p~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 174 (538)
.....+ ...|..+.......++.. .+. ..+..+...| ...-+.-+..+.+.++..+...
T Consensus 142 ~~vG~dF~S~~lWdkyie~en~qks~k---------~v~------~iyeRileiP---~~~~~~~f~~f~~~l~~~~~~~ 203 (577)
T KOG1258|consen 142 SYVGLDFLSDPLWDKYIEFENGQKSWK---------RVA------NIYERILEIP---LHQLNRHFDRFKQLLNQNEEKI 203 (577)
T ss_pred HhcccchhccHHHHHHHHHHhccccHH---------HHH------HHHHHHHhhh---hhHhHHHHHHHHHHHhcCChhh
Confidence 764433 223333322221111110 000 0000000000 0011122233333333322211
Q ss_pred hhhhc-hHHHHHHHHHHHhhhcCCCCCCCccccccccCCCCCCCccccccCCCCCCCCCCccccHHHHHHHHhHHHHHHH
Q 009278 175 NLYLK-DQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKEAKERKEKALKE 253 (538)
Q Consensus 175 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (538)
..-.. ..........- ..........+..+.-+.... .....+.... .......
T Consensus 204 l~~~d~~~~l~~~~~~~-~~~~~~~~~~e~~~~~v~~~~------------------~~s~~l~~~~------~~l~~~~ 258 (577)
T KOG1258|consen 204 LLSIDELIQLRSDVAER-SKITHSQEPLEELEIGVKDST------------------DPSKSLTEEK------TILKRIV 258 (577)
T ss_pred hcCHHHHHHHhhhHHhh-hhcccccChhHHHHHHHhhcc------------------CccchhhHHH------HHHHHHH
Confidence 11000 00000000000 000000000000000000000 0000000000 0111111
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHhh-----CC---CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHH
Q 009278 254 KEAGNAAYKKKEFEKAIEHYSSALEL-----DD---EDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIA 325 (538)
Q Consensus 254 ~~~~~~~~~~~~~~~A~~~~~~al~~-----~p---~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 325 (538)
...=.++.........+-.++..+.. .| .+...|......-...|+++...-.|++++--.....
T Consensus 259 ~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~------- 331 (577)
T KOG1258|consen 259 SIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYD------- 331 (577)
T ss_pred HHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhH-------
Confidence 12223334444555666666666643 22 2345677777778889999999999999887554443
Q ss_pred HHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcCCh
Q 009278 326 RALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKY 405 (538)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 405 (538)
..|.+...-....++ .+-|-..+..+.+. ..|..+.....-+...-..|++
T Consensus 332 efWiky~~~m~~~~~----~~~~~~~~~~~~~i-------------------------~~k~~~~i~L~~a~f~e~~~n~ 382 (577)
T KOG1258|consen 332 EFWIKYARWMESSGD----VSLANNVLARACKI-------------------------HVKKTPIIHLLEARFEESNGNF 382 (577)
T ss_pred HHHHHHHHHHHHcCc----hhHHHHHHHhhhhh-------------------------cCCCCcHHHHHHHHHHHhhccH
Confidence 344444444444444 66666666665553 3455555666666666666677
Q ss_pred HHHHHHHHHHHhcCCCCchhHhHHHHHHHHhCCchhHHH---HHHHHHhcCCC---chHHHHHHHHHHH-HccCHHHHHH
Q 009278 406 PEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLK---DADKCIELDPT---FSKGYTRKGAIQF-FLKEYDKALE 478 (538)
Q Consensus 406 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~---~~~~al~~~p~---~~~~~~~l~~~~~-~~g~~~~A~~ 478 (538)
..|..++++..+..|+...+-........++|+.+.+.. .+.....-..+ ....+...++... -.++.+.|..
T Consensus 383 ~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~ 462 (577)
T KOG1258|consen 383 DDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARI 462 (577)
T ss_pred HHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHH
Confidence 777777777666666665555555555666666666653 22222211111 1222333343332 3566666777
Q ss_pred HHHHHhccCCCCHHHHHHHHHHHHHh
Q 009278 479 TYQEGLKHDPQNQELLDGVRRCVQQI 504 (538)
Q Consensus 479 ~~~~al~~~p~~~~~~~~l~~~~~~~ 504 (538)
.+.+++...|.+...+..+.......
T Consensus 463 ~l~~~~~~~~~~k~~~~~~~~~~~~~ 488 (577)
T KOG1258|consen 463 ILLEANDILPDCKVLYLELIRFELIQ 488 (577)
T ss_pred HHHHhhhcCCccHHHHHHHHHHHHhC
Confidence 77777777776666666655554443
No 228
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=98.24 E-value=0.00011 Score=67.54 Aligned_cols=192 Identities=13% Similarity=0.057 Sum_probs=117.8
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCChhHHHhhhh
Q 009278 291 AAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNE 370 (538)
Q Consensus 291 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 370 (538)
..-..+..++..-++.-.++++++|++ +.+|..++.-... ...++..+|+++++.....- ....
T Consensus 175 Mq~AWRERnp~aRIkaA~eALei~pdC-------AdAYILLAEEeA~------Ti~Eae~l~rqAvkAgE~~l---g~s~ 238 (539)
T PF04184_consen 175 MQKAWRERNPQARIKAAKEALEINPDC-------ADAYILLAEEEAS------TIVEAEELLRQAVKAGEASL---GKSQ 238 (539)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhhhhh-------hHHHhhccccccc------CHHHHHHHHHHHHHHHHHhh---chhh
Confidence 334445566667777777777777766 4444444421111 14556666666665322100 0000
Q ss_pred HHHHHHHHHHHHHcCCC--chHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC--CchhHhHHHHHHHHhCCchhHHHHH
Q 009278 371 AEKAKKELEQQEIFDPK--IADEEREKGNEFFKQQKYPEAIQHYTESLRRNPK--DPRTYSNRAACYTKLGAMPEGLKDA 446 (538)
Q Consensus 371 ~~~a~~~~~~~~~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~ 446 (538)
..+....+-......+. ...+...+|.+..+.|+.++|++.++..++..|. +..+..++..++..++.|.++...+
T Consensus 239 ~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL 318 (539)
T PF04184_consen 239 FLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALL 318 (539)
T ss_pred hhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHH
Confidence 00000000000001111 2344567899999999999999999999988875 4568999999999999999999999
Q ss_pred HHHHhc-CCCchHHHHHHHHHHHH-ccC---------------HHHHHHHHHHHhccCCCCHHHHHHHH
Q 009278 447 DKCIEL-DPTFSKGYTRKGAIQFF-LKE---------------YDKALETYQEGLKHDPQNQELLDGVR 498 (538)
Q Consensus 447 ~~al~~-~p~~~~~~~~l~~~~~~-~g~---------------~~~A~~~~~~al~~~p~~~~~~~~l~ 498 (538)
.+.-++ -|+.+...+..+.+..+ .++ -..|.+.+.+|++.+|.-+..+..+.
T Consensus 319 ~kYdDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe~K 387 (539)
T PF04184_consen 319 AKYDDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLEMK 387 (539)
T ss_pred HHhccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhccC
Confidence 887544 36666666666655433 222 24578899999999998776655443
No 229
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.23 E-value=1.2e-06 Score=49.02 Aligned_cols=32 Identities=25% Similarity=0.493 Sum_probs=20.9
Q ss_pred HHHHHhcCCCchHHHHHHHHHHHHccCHHHHH
Q 009278 446 ADKCIELDPTFSKGYTRKGAIQFFLKEYDKAL 477 (538)
Q Consensus 446 ~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 477 (538)
|+++|+++|+++.+|+++|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 55666666666666666666666666666664
No 230
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.20 E-value=1.1e-06 Score=49.12 Aligned_cols=32 Identities=28% Similarity=0.521 Sum_probs=17.1
Q ss_pred HHHHhccCCcchHHHHHHHHHHHhcCCHHHHH
Q 009278 25 FTEAISLSPDNHVLYSNRSAAHASLHNYADAL 56 (538)
Q Consensus 25 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 56 (538)
|+++|+.+|+++.+|+++|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 44555555555555555555555555555543
No 231
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.18 E-value=0.001 Score=65.67 Aligned_cols=104 Identities=19% Similarity=0.052 Sum_probs=66.8
Q ss_pred HHHHHHHhhc-----CCHHHHHHHHHHHhcc-----CCcchHHHHHHHHHHHhcC-----CHHHHHHHHHHHhccCCCch
Q 009278 6 KAKGNAAFSS-----GDYEAAVRHFTEAISL-----SPDNHVLYSNRSAAHASLH-----NYADALADAKKTVELKPDWS 70 (538)
Q Consensus 6 ~~~g~~~~~~-----g~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~p~~~ 70 (538)
...|.+++.- +|.+.|+.+|+.+... .-.++.+.+.+|.+|.+.. ++..|+..|.++.... ++
T Consensus 248 ~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g--~~ 325 (552)
T KOG1550|consen 248 YALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG--NP 325 (552)
T ss_pred HHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC--Cc
Confidence 3444444433 6788888888887661 1114567778888887743 6677888888776654 55
Q ss_pred HHHHHHHHHHhhcc---CHHHHHHHHHhhhhcCCCcHHHHhhHHHH
Q 009278 71 KGYSRLGAAHLGLQ---DYIEAVNSYKKGLDIDPNNEALKSGLADA 113 (538)
Q Consensus 71 ~~~~~la~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 113 (538)
.+.+.+|.++..-. ++..|..+|..|... .+..+...++.+
T Consensus 326 ~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~ 369 (552)
T KOG1550|consen 326 DAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALC 369 (552)
T ss_pred hHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHH
Confidence 66777777777655 566788888777654 344444444444
No 232
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.17 E-value=0.0001 Score=65.79 Aligned_cols=112 Identities=11% Similarity=0.035 Sum_probs=91.2
Q ss_pred cCCCchHHHHHHHHHHHh-cCChHHHHHHHHHHHhcCCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCch---HH
Q 009278 384 FDPKIADEEREKGNEFFK-QQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFS---KG 459 (538)
Q Consensus 384 ~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~---~~ 459 (538)
..+....+|...|.+-+. .++.+.|..+|+.+++..|.+...|......+...|+.+.|...|++++..-|... ..
T Consensus 30 ~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~i 109 (280)
T PF05843_consen 30 DKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKI 109 (280)
T ss_dssp CCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHH
Confidence 666778899999999666 56677799999999999999999999999999999999999999999998876654 57
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHhccCCCCHHHHH
Q 009278 460 YTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLD 495 (538)
Q Consensus 460 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 495 (538)
|......-...|+.+......+++.+..|++..+..
T Consensus 110 w~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~~~ 145 (280)
T PF05843_consen 110 WKKFIEFESKYGDLESVRKVEKRAEELFPEDNSLEL 145 (280)
T ss_dssp HHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHHHH
Confidence 777788888899999999999999999888655543
No 233
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=98.15 E-value=0.00089 Score=61.79 Aligned_cols=62 Identities=16% Similarity=0.153 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 009278 250 ALKEKEAGNAAYKKKEFEKAIEHYSSALELDDE--DISYLTNRAAVYLEMGKYEECIKDCDKAV 311 (538)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 311 (538)
..+...+|.+..+.|+.++|++.++..++..|. +..++.++..++..++.|.++...+.+.-
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 344567899999999999999999999998875 46789999999999999999999888853
No 234
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=98.14 E-value=0.0025 Score=61.44 Aligned_cols=116 Identities=16% Similarity=0.019 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC----CchhHhHHHHHHHHhCCchhHHHHH
Q 009278 371 AEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPK----DPRTYSNRAACYTKLGAMPEGLKDA 446 (538)
Q Consensus 371 ~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~----~~~~~~~la~~~~~~~~~~~A~~~~ 446 (538)
...+.+.+.......|+..-..+..|.++...|+.++|++.|++++..... ..-.++.+|+++..+.+|++|..++
T Consensus 249 ~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f 328 (468)
T PF10300_consen 249 LEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYF 328 (468)
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHH
Confidence 344444555555588999999999999999999999999999998854332 2346788999999999999999999
Q ss_pred HHHHhcCCCchH-HHHHHHHHHHHccCH-------HHHHHHHHHHhcc
Q 009278 447 DKCIELDPTFSK-GYTRKGAIQFFLKEY-------DKALETYQEGLKH 486 (538)
Q Consensus 447 ~~al~~~p~~~~-~~~~l~~~~~~~g~~-------~~A~~~~~~al~~ 486 (538)
.+..+.+.-... ..+..|.++...|+. ++|.+.|.++-.+
T Consensus 329 ~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 329 LRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 999997665433 446678899999998 8888888888654
No 235
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=98.13 E-value=0.0063 Score=55.38 Aligned_cols=89 Identities=12% Similarity=0.053 Sum_probs=73.1
Q ss_pred HHHHHhccCCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHHHHHhhccCHHHHHHHHHhhhhcCCCc
Q 009278 24 HFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNN 103 (538)
Q Consensus 24 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 103 (538)
-++.-++.+|++...|+.+..-+..+|.+++-.+.+++...-.|-.+.+|...-..-+..++|......|-+.+...-+
T Consensus 30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~- 108 (660)
T COG5107 30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLN- 108 (660)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhcc-
Confidence 5667788999999999999999999999999999999999999988888877766667778899888888888875433
Q ss_pred HHHHhhHHHH
Q 009278 104 EALKSGLADA 113 (538)
Q Consensus 104 ~~~~~~l~~~ 113 (538)
.+.|......
T Consensus 109 ldLW~lYl~Y 118 (660)
T COG5107 109 LDLWMLYLEY 118 (660)
T ss_pred HhHHHHHHHH
Confidence 5555444433
No 236
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=98.11 E-value=0.0097 Score=56.53 Aligned_cols=112 Identities=11% Similarity=-0.094 Sum_probs=75.1
Q ss_pred HhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhcC-CCCchhHhHHHHHHHHhCCchhHHH
Q 009278 366 KKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRN-PKDPRTYSNRAACYTKLGAMPEGLK 444 (538)
Q Consensus 366 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~ 444 (538)
...|.+......+++++.--......|...+......|+.+-|-..+.++.++. |..+.+...-+..-...|++..|..
T Consensus 308 i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~ 387 (577)
T KOG1258|consen 308 ITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKV 387 (577)
T ss_pred hhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHH
Confidence 344666666666777666666667777777777777777777776666666553 4455556666666666677777777
Q ss_pred HHHHHHhcCCCchHHHHHHHHHHHHccCHHHHH
Q 009278 445 DADKCIELDPTFSKGYTRKGAIQFFLKEYDKAL 477 (538)
Q Consensus 445 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 477 (538)
.++++.+..|+...+-.....+..+.|+.+.+.
T Consensus 388 ~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 388 ILQRIESEYPGLVEVVLRKINWERRKGNLEDAN 420 (577)
T ss_pred HHHHHHhhCCchhhhHHHHHhHHHHhcchhhhh
Confidence 777777666776666666666666777776666
No 237
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.10 E-value=0.0019 Score=63.87 Aligned_cols=284 Identities=16% Similarity=0.117 Sum_probs=174.4
Q ss_pred CHHHHHHHHHHHhccCCcchHHHHHHHHHHHhc-----CCHHHHHHHHHHHhcc-----CCCchHHHHHHHHHHhhcc--
Q 009278 17 DYEAAVRHFTEAISLSPDNHVLYSNRSAAHASL-----HNYADALADAKKTVEL-----KPDWSKGYSRLGAAHLGLQ-- 84 (538)
Q Consensus 17 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~~-- 84 (538)
+-..|..+|+.+.... +..+.+.+|.||..- .|.+.|+.+|+.+... .-.++.+...+|.+|....
T Consensus 227 ~~~~a~~~~~~~a~~g--~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKLG--HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhhHHHHHHHHHHhhc--chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCC
Confidence 4567888888876554 678888888888765 5899999999988761 1125567888888888743
Q ss_pred ---CHHHHHHHHHhhhhcCCCcHHHHhhHHHHHHHHhhcccCCCCCCCCcccccccCCchhhcccCCCCCCCcccHHHHH
Q 009278 85 ---DYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFR 161 (538)
Q Consensus 85 ---~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (538)
++..|...|.++-.... +.+...++.++..-
T Consensus 305 ~~~d~~~A~~~~~~aA~~g~--~~a~~~lg~~~~~g-------------------------------------------- 338 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELGN--PDAQYLLGVLYETG-------------------------------------------- 338 (552)
T ss_pred ccccHHHHHHHHHHHHhcCC--chHHHHHHHHHHcC--------------------------------------------
Confidence 67778888888876533 33333333322111
Q ss_pred HHHHhhhcCCCchhhhhchHHHHHHHHHHHhhhcCCCCCCCccccccccCCCCCCCccccccCCCCCCCCCCccccHHHH
Q 009278 162 NMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEK 241 (538)
Q Consensus 162 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (538)
T Consensus 339 -------------------------------------------------------------------------------- 338 (552)
T KOG1550|consen 339 -------------------------------------------------------------------------------- 338 (552)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh----CCHHHHHHHHHHHHHccccc
Q 009278 242 EAKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEM----GKYEECIKDCDKAVERGREL 317 (538)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----~~~~~A~~~~~~~~~~~~~~ 317 (538)
. ...++..|..+|..|... .+..+.+.++.||..- .+...|..+++++.+..+
T Consensus 339 ----------------~---~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g~-- 395 (552)
T KOG1550|consen 339 ----------------T---KERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKGN-- 395 (552)
T ss_pred ----------------C---ccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHccC--
Confidence 1 124678999999988765 4678888888888653 478899999999988773
Q ss_pred hhhHHHHHHHHHHhHHHHHHh-hhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHH
Q 009278 318 RSDFKMIARALTRKGTALVKM-AKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKG 396 (538)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la 396 (538)
..+...++..+... +. +..+...+.......... ...+........
T Consensus 396 -------~~A~~~~~~~~~~g~~~----~~~~~~~~~~~a~~g~~~----------------------~q~~a~~l~~~~ 442 (552)
T KOG1550|consen 396 -------PSAAYLLGAFYEYGVGR----YDTALALYLYLAELGYEV----------------------AQSNAAYLLDQS 442 (552)
T ss_pred -------hhhHHHHHHHHHHcccc----ccHHHHHHHHHHHhhhhH----------------------HhhHHHHHHHhc
Confidence 22223333222221 22 444444443333311100 000000000001
Q ss_pred HHHHh----cCChHHHHHHHHHHHhcCCCCchhHhHHHHHHHHh----CCchhHHHHHHHHHhcCCCchHHHHHHHHHHH
Q 009278 397 NEFFK----QQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKL----GAMPEGLKDADKCIELDPTFSKGYTRKGAIQF 468 (538)
Q Consensus 397 ~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~----~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 468 (538)
..... ..+...+...+.++.. ..++.+...+|.+|..- .+++.|...|.++.... +...+++|.++.
T Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~a~~--~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e 517 (552)
T KOG1550|consen 443 EEDLFSRGVISTLERAFSLYSRAAA--QGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHE 517 (552)
T ss_pred cccccccccccchhHHHHHHHHHHh--ccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHh
Confidence 01111 1244555555555543 34667777788877654 35788888888887766 788888888887
Q ss_pred H-c--cCHHHHHHHHHHHhccCCC
Q 009278 469 F-L--KEYDKALETYQEGLKHDPQ 489 (538)
Q Consensus 469 ~-~--g~~~~A~~~~~~al~~~p~ 489 (538)
. . .....|..+|.++.+.+..
T Consensus 518 ~g~g~~~~~~a~~~~~~~~~~~~~ 541 (552)
T KOG1550|consen 518 HGEGIKVLHLAKRYYDQASEEDSR 541 (552)
T ss_pred cCcCcchhHHHHHHHHHHHhcCch
Confidence 5 1 1268888888888776654
No 238
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.09 E-value=3.3e-05 Score=68.97 Aligned_cols=123 Identities=7% Similarity=-0.038 Sum_probs=101.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHhHHHHHHHH-hCCchhHHHHHHHHHhcCCCchHHHHHHHHHHHH
Q 009278 391 EEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTK-LGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFF 469 (538)
Q Consensus 391 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 469 (538)
+|..+.....+.+..+.|..+|.++.+..+....+|...|.+.+. .++.+.|...|+.+++..|.++..|......+..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 566677777788889999999999997767778999999999777 5566669999999999999999999999999999
Q ss_pred ccCHHHHHHHHHHHhccCCCCH---HHHHHHHHHHHHhhhhccCCCC
Q 009278 470 LKEYDKALETYQEGLKHDPQNQ---ELLDGVRRCVQQINKAGRGELS 513 (538)
Q Consensus 470 ~g~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~~~~~~a~~~ 513 (538)
.|+.+.|...|++++..-|... .+|..........|+.+.....
T Consensus 83 ~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v 129 (280)
T PF05843_consen 83 LNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKV 129 (280)
T ss_dssp TT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHH
T ss_pred hCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999999999877655 6888888888888877655533
No 239
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.08 E-value=0.006 Score=59.02 Aligned_cols=175 Identities=15% Similarity=0.193 Sum_probs=101.6
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHH------HHcccc-chhhHHHHHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcC
Q 009278 287 LTNRAAVYLEMGKYEECIKDCDKA------VERGRE-LRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEH 359 (538)
Q Consensus 287 ~~~la~~~~~~~~~~~A~~~~~~~------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 359 (538)
+-.-|.+|.+..++++|+++|++. +++..- .+... ...-...|.-+...++ ++.|+..|-.+-...
T Consensus 664 ydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~ev---v~lee~wg~hl~~~~q----~daainhfiea~~~~ 736 (1636)
T KOG3616|consen 664 YDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEV---VKLEEAWGDHLEQIGQ----LDAAINHFIEANCLI 736 (1636)
T ss_pred HHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHH---hhHHHHHhHHHHHHHh----HHHHHHHHHHhhhHH
Confidence 334455555666666777666542 222110 01111 1222233555566666 888888886654433
Q ss_pred CChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHhHHHHHHHHhCCc
Q 009278 360 RNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAM 439 (538)
Q Consensus 360 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~ 439 (538)
...+......++.+|+..++.+.... .....|-.++.-|...|+|+-|.++|.++- ........|-+.|+|
T Consensus 737 kaieaai~akew~kai~ildniqdqk-~~s~yy~~iadhyan~~dfe~ae~lf~e~~--------~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 737 KAIEAAIGAKEWKKAISILDNIQDQK-TASGYYGEIADHYANKGDFEIAEELFTEAD--------LFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHHHhhhhhhhhhHhHHHHhhhhc-cccccchHHHHHhccchhHHHHHHHHHhcc--------hhHHHHHHHhccccH
Confidence 33345555677778877776543322 233455678888999999999999987642 233345567788899
Q ss_pred hhHHHHHHHHHhcCCCc-hHHHHHHHHHHHHccCHHHHHHH
Q 009278 440 PEGLKDADKCIELDPTF-SKGYTRKGAIQFFLKEYDKALET 479 (538)
Q Consensus 440 ~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~ 479 (538)
..|.+.-+++.. |.. ...|...+.-+...|++.+|...
T Consensus 808 ~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeql 846 (1636)
T KOG3616|consen 808 EDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQL 846 (1636)
T ss_pred HHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhhe
Confidence 888887776643 332 23444555555555555554443
No 240
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.07 E-value=0.00025 Score=61.45 Aligned_cols=165 Identities=19% Similarity=0.095 Sum_probs=109.3
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCChhHHH
Q 009278 287 LTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLK 366 (538)
Q Consensus 287 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 366 (538)
...-+.+....|++.+|...+++.++..|.+.-.+...-.+++..|. .......+++++..-..
T Consensus 106 ~h~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~-----------~~~~k~ai~kIip~wn~----- 169 (491)
T KOG2610|consen 106 RHAKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGN-----------QIGKKNAIEKIIPKWNA----- 169 (491)
T ss_pred hhhhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccc-----------hhhhhhHHHHhccccCC-----
Confidence 34445666778888899999999999998885555444455555554 66666677777653111
Q ss_pred hhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHhHHHHHHHHhCCchhHHHHH
Q 009278 367 KLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDA 446 (538)
Q Consensus 367 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 446 (538)
..|-...+.-.++..+...|-|++|.+.-+++++++|.+..+...++.++...|+..++.++.
T Consensus 170 -----------------dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM 232 (491)
T KOG2610|consen 170 -----------------DLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFM 232 (491)
T ss_pred -----------------CCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHH
Confidence 112224444556666777888888888888888888888888888888888888888888777
Q ss_pred HHHHhcCCC----chHHHHHHHHHHHHccCHHHHHHHHHHHh
Q 009278 447 DKCIELDPT----FSKGYTRKGAIQFFLKEYDKALETYQEGL 484 (538)
Q Consensus 447 ~~al~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~al 484 (538)
.+.-..-.. ...-|..-+.++..-+.++.|++.|.+-+
T Consensus 233 ~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 233 YKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDREI 274 (491)
T ss_pred HhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHHHH
Confidence 654322111 01234556677777788888888876543
No 241
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.07 E-value=7.7e-06 Score=46.19 Aligned_cols=30 Identities=33% Similarity=0.484 Sum_probs=12.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhccCC
Q 009278 38 LYSNRSAAHASLHNYADALADAKKTVELKP 67 (538)
Q Consensus 38 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p 67 (538)
+|+.+|.++..+|++++|+..|+++++++|
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 334444444444444444444444444444
No 242
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.06 E-value=0.0097 Score=54.75 Aligned_cols=433 Identities=14% Similarity=0.052 Sum_probs=230.5
Q ss_pred HHHHHHHH-hhcCCHHHHHHHHHHHhccC---Ccc----hHHHHHHHHHHHhcC-CHHHHHHHHHHHhccCCCch----H
Q 009278 5 AKAKGNAA-FSSGDYEAAVRHFTEAISLS---PDN----HVLYSNRSAAHASLH-NYADALADAKKTVELKPDWS----K 71 (538)
Q Consensus 5 ~~~~g~~~-~~~g~~~~A~~~~~~al~~~---p~~----~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~----~ 71 (538)
....|..+ +-..+++.|...++++..+. |+. -.+...++.+|.... .+..|...+.+++++....+ .
T Consensus 49 ~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsck 128 (629)
T KOG2300|consen 49 HLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCK 128 (629)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHH
Confidence 44555554 45789999999999998764 332 367788999998887 88899999999999876654 4
Q ss_pred HHHHHHHHHhhccCHHHHHHHHHhhhhc-CCCcHH---HHhhHHHHHHHHhhcccCCCCCCCCcccccc-cCCchhhccc
Q 009278 72 GYSRLGAAHLGLQDYIEAVNSYKKGLDI-DPNNEA---LKSGLADAKAAASASFRSRSPPADNPFGSAF-AGPEMWAKLT 146 (538)
Q Consensus 72 ~~~~la~~~~~~~~~~~A~~~~~~al~~-~p~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 146 (538)
..+.++.++.-..++..|.+.+.-..+. +|-... ....+.......-+.+. ....... .-...++...
T Consensus 129 llfQLaql~~idkD~~sA~elLavga~sAd~~~~~ylr~~ftls~~~ll~me~d~-------~dV~~ll~~~~qi~~n~~ 201 (629)
T KOG2300|consen 129 LLFQLAQLHIIDKDFPSALELLAVGAESADHICFPYLRMLFTLSMLMLLIMERDD-------YDVEKLLQRCGQIWQNIS 201 (629)
T ss_pred HHHHHHHHHhhhccchhHHHHHhccccccchhhhHHHHHHHHHHHHHHHHhCccH-------HHHHHHHHHHHHHHhccC
Confidence 5678999999999999999986543322 222211 11111111111100000 0000000 0000011111
Q ss_pred CCCCCCCcccHHHHHHHHHhhhcCCCchhhhhchHHHHHHHHHHHhhhcCC--CCCCCccccccccCCCCCCCccccccC
Q 009278 147 ADPTTRSYLDQDDFRNMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKG--PTGGDDVEMQDEDAPKGPETSKEETRK 224 (538)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (538)
.++.. .+-+..+.-.++ ...|+..|+.......+.+++... .... ....-.+.+.
T Consensus 202 sdk~~-----~E~LkvFyl~lq-----l~yy~~~gq~rt~k~~lkQLQ~siqtist~-~~~h~e~ilg------------ 258 (629)
T KOG2300|consen 202 SDKTQ-----KEMLKVFYLVLQ-----LSYYLLPGQVRTVKPALKQLQDSIQTISTS-SRGHDEKILG------------ 258 (629)
T ss_pred CChHH-----HHHHHHHHHHHH-----HHHHhcccchhhhHHHHHHHHHHHhccCCC-CCCccccccC------------
Confidence 11100 000000000000 001111122221111111111000 0000 0000000000
Q ss_pred CCCCCCCCCccccHHHHHHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhC------CCCH--------HHHHHH
Q 009278 225 PESEPEPEPMELTEEEKEAKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELD------DEDI--------SYLTNR 290 (538)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~------p~~~--------~~~~~l 290 (538)
.+.+ ..-..+....-.+-++.....--.-.|-+++|.++-++++... |... ..+..+
T Consensus 259 -----sps~----~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~i 329 (629)
T KOG2300|consen 259 -----SPSP----ILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHI 329 (629)
T ss_pred -----CCCh----HHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHH
Confidence 0000 0111111111122222222222334566677777776666442 1111 234566
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHccccchh---hHHHHHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCChhHHHh
Q 009278 291 AAVYLEMGKYEECIKDCDKAVERGRELRS---DFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKK 367 (538)
Q Consensus 291 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 367 (538)
..|-.-.|++.+|++....+.+.....+. ....-+.+...+|......+. ++.|...|..+.+.....+
T Consensus 330 v~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~----~enAe~hf~~a~k~t~~~d---- 401 (629)
T KOG2300|consen 330 VMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNC----YENAEFHFIEATKLTESID---- 401 (629)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcch----HHHHHHHHHHHHHhhhHHH----
Confidence 77778889999999888877765433332 222336677778877777777 9999999988887432211
Q ss_pred hhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC----------chhHhHHHHHHHHhC
Q 009278 368 LNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKD----------PRTYSNRAACYTKLG 437 (538)
Q Consensus 368 ~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~----------~~~~~~la~~~~~~~ 437 (538)
-.+....++|.+|.+.|+-+.-.+.++. +.|.+ ..+++..|...+.++
T Consensus 402 -------------------l~a~~nlnlAi~YL~~~~~ed~y~~ld~---i~p~nt~s~ssq~l~a~~~~v~glfaf~qn 459 (629)
T KOG2300|consen 402 -------------------LQAFCNLNLAISYLRIGDAEDLYKALDL---IGPLNTNSLSSQRLEASILYVYGLFAFKQN 459 (629)
T ss_pred -------------------HHHHHHHhHHHHHHHhccHHHHHHHHHh---cCCCCCCcchHHHHHHHHHHHHHHHHHHhc
Confidence 0233446788999998876544444433 34442 246677788888999
Q ss_pred CchhHHHHHHHHHhcCCC------chHHHHHHHHHHHHccCHHHHHHHHHHHhccC---CCCHHH---HHHHHHHHHHhh
Q 009278 438 AMPEGLKDADKCIELDPT------FSKGYTRKGAIQFFLKEYDKALETYQEGLKHD---PQNQEL---LDGVRRCVQQIN 505 (538)
Q Consensus 438 ~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~---~~~l~~~~~~~~ 505 (538)
++.||...+.+.++.... ..-.+..+|.+....|+..++....+-++++. |+.+.. ...+..++...|
T Consensus 460 ~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~vqLws~si~~~L~~a~g 539 (629)
T KOG2300|consen 460 DLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPVQLWSSSILTDLYQALG 539 (629)
T ss_pred cHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchHHHHHHHHHHHHHHHhC
Confidence 999999999999987511 12245678888899999999999988888764 443322 233445556666
Q ss_pred h
Q 009278 506 K 506 (538)
Q Consensus 506 ~ 506 (538)
.
T Consensus 540 ~ 540 (629)
T KOG2300|consen 540 E 540 (629)
T ss_pred c
Confidence 5
No 243
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.04 E-value=7.1e-06 Score=46.32 Aligned_cols=34 Identities=44% Similarity=0.693 Sum_probs=31.1
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHHHhccCCcc
Q 009278 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDN 35 (538)
Q Consensus 2 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~ 35 (538)
|+.|+.+|.+++..|++++|+..|+++++++|++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 5789999999999999999999999999999974
No 244
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=98.03 E-value=1e-05 Score=45.68 Aligned_cols=33 Identities=27% Similarity=0.580 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHhccCCCC
Q 009278 458 KGYTRKGAIQFFLKEYDKALETYQEGLKHDPQN 490 (538)
Q Consensus 458 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 490 (538)
.+++.+|.++..+|++++|+.+|+++++++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 456667777777777777777777777776654
No 245
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=98.00 E-value=1.3e-05 Score=45.22 Aligned_cols=29 Identities=31% Similarity=0.421 Sum_probs=11.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhccCC
Q 009278 39 YSNRSAAHASLHNYADALADAKKTVELKP 67 (538)
Q Consensus 39 ~~~la~~~~~~g~~~~A~~~~~~al~~~p 67 (538)
++.+|.+++.+|++++|++.|++++.++|
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 33444444444444444444444444443
No 246
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.00 E-value=0.0046 Score=59.78 Aligned_cols=216 Identities=15% Similarity=0.153 Sum_probs=108.7
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHHHHHHHh
Q 009278 252 KEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRK 331 (538)
Q Consensus 252 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (538)
.|-..+.-|...|+|+.|.+.|.++- ....-...|.+.|+|..|...-.++.. |... ...|...
T Consensus 767 yy~~iadhyan~~dfe~ae~lf~e~~--------~~~dai~my~k~~kw~da~kla~e~~~--~e~t------~~~yiak 830 (1636)
T KOG3616|consen 767 YYGEIADHYANKGDFEIAEELFTEAD--------LFKDAIDMYGKAGKWEDAFKLAEECHG--PEAT------ISLYIAK 830 (1636)
T ss_pred cchHHHHHhccchhHHHHHHHHHhcc--------hhHHHHHHHhccccHHHHHHHHHHhcC--chhH------HHHHHHh
Confidence 34556777888899999988887752 222334567778888888777766543 2211 3344444
Q ss_pred HHHHHHhhhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCC-chHHHHHHHHHHHhcCChHHHHH
Q 009278 332 GTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPK-IADEEREKGNEFFKQQKYPEAIQ 410 (538)
Q Consensus 332 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~ 410 (538)
+.-+...|+ +.+|.+.|-..-.-+..-..+.+.|..+..+....+ ..|+ ..+.+..+|.-+...|+...|..
T Consensus 831 aedldehgk----f~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k---~h~d~l~dt~~~f~~e~e~~g~lkaae~ 903 (1636)
T KOG3616|consen 831 AEDLDEHGK----FAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEK---HHGDHLHDTHKHFAKELEAEGDLKAAEE 903 (1636)
T ss_pred HHhHHhhcc----hhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHH---hChhhhhHHHHHHHHHHHhccChhHHHH
Confidence 544445555 555554442211111111122222223333322222 1222 23344455555556666655555
Q ss_pred HHHHHHhc------CC-----------------CCc--hhHhH---------HHHHHHHhCCchhHHHHH------HHHH
Q 009278 411 HYTESLRR------NP-----------------KDP--RTYSN---------RAACYTKLGAMPEGLKDA------DKCI 450 (538)
Q Consensus 411 ~~~~al~~------~~-----------------~~~--~~~~~---------la~~~~~~~~~~~A~~~~------~~al 450 (538)
.|-++-.. .. .+. .+.+. ...++-+.|-...|+.+. +-++
T Consensus 904 ~flea~d~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~af 983 (1636)
T KOG3616|consen 904 HFLEAGDFKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAF 983 (1636)
T ss_pred HHHhhhhHHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHH
Confidence 55443211 00 010 00000 111222333333333321 1111
Q ss_pred h-----cCCCchHHHHHHHHHHHHccCHHHHHHHHHHHhccCCCC
Q 009278 451 E-----LDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQN 490 (538)
Q Consensus 451 ~-----~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 490 (538)
. .....+.++..++..+...|++++|-+.|-.+++++.-|
T Consensus 984 dlari~~k~k~~~vhlk~a~~ledegk~edaskhyveaiklntyn 1028 (1636)
T KOG3616|consen 984 DLARIAAKDKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLNTYN 1028 (1636)
T ss_pred HHHHHhhhccCccchhHHhhhhhhccchhhhhHhhHHHhhccccc
Confidence 1 123346678888888888999999999999998887544
No 247
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.99 E-value=0.00062 Score=59.14 Aligned_cols=164 Identities=11% Similarity=0.060 Sum_probs=126.9
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc-cccchhhHHHHHHHHHHh
Q 009278 253 EKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVER-GRELRSDFKMIARALTRK 331 (538)
Q Consensus 253 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 331 (538)
....+.+....|++.+|-..+++.++-.|.+.-++..--.+++.+|+...-...+++++-. +|+.| .+ ..+.-..
T Consensus 106 ~h~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp-~~---sYv~Gmy 181 (491)
T KOG2610|consen 106 RHAKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLP-CY---SYVHGMY 181 (491)
T ss_pred hhhhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCc-HH---HHHHHHH
Confidence 4445667788999999999999999999999988888888999999999999999999877 55443 22 2223334
Q ss_pred HHHHHHhhhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcCChHHHHHH
Q 009278 332 GTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQH 411 (538)
Q Consensus 332 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 411 (538)
+..+...|- |++|.+..+++++ +++.+..+...++.++...|++.++.+.
T Consensus 182 aFgL~E~g~----y~dAEk~A~ralq--------------------------iN~~D~Wa~Ha~aHVlem~~r~Keg~eF 231 (491)
T KOG2610|consen 182 AFGLEECGI----YDDAEKQADRALQ--------------------------INRFDCWASHAKAHVLEMNGRHKEGKEF 231 (491)
T ss_pred HhhHHHhcc----chhHHHHHHhhcc--------------------------CCCcchHHHHHHHHHHHhcchhhhHHHH
Confidence 444556666 9999999999988 8888999999999999999999999988
Q ss_pred HHHHHhcCCCC----chhHhHHHHHHHHhCCchhHHHHHHHHH
Q 009278 412 YTESLRRNPKD----PRTYSNRAACYTKLGAMPEGLKDADKCI 450 (538)
Q Consensus 412 ~~~al~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~al 450 (538)
+.+.-..-... ..-|..-+.++...+.|+.|+..|.+-+
T Consensus 232 M~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 232 MYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDREI 274 (491)
T ss_pred HHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHHHH
Confidence 87643322211 2335567778888899999999997655
No 248
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.97 E-value=7.9e-06 Score=70.78 Aligned_cols=115 Identities=22% Similarity=0.355 Sum_probs=94.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCchHHHHHHHHHHHHccCHHH
Q 009278 396 GNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDK 475 (538)
Q Consensus 396 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 475 (538)
+.-.+..|.++.|++.|..++.++|.....+...+.++..+++...|+..|..+++++|+....|-..|.....+|++++
T Consensus 121 A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~ 200 (377)
T KOG1308|consen 121 ASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEE 200 (377)
T ss_pred HHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHH
Confidence 34456678899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhccCC
Q 009278 476 ALETYQEGLKHDPQNQELLDGVRRCVQQINKAGRGE 511 (538)
Q Consensus 476 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~ 511 (538)
|..+++.+.+++-+ ..+-..+..+.-..+...+-.
T Consensus 201 aa~dl~~a~kld~d-E~~~a~lKeV~p~a~ki~e~~ 235 (377)
T KOG1308|consen 201 AAHDLALACKLDYD-EANSATLKEVFPNAGKIEEHR 235 (377)
T ss_pred HHHHHHHHHhcccc-HHHHHHHHHhccchhhhhhch
Confidence 99999999988643 333344445544444444433
No 249
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=0.0007 Score=58.81 Aligned_cols=102 Identities=28% Similarity=0.477 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHH
Q 009278 248 EKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDED----ISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKM 323 (538)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 323 (538)
..+..+..-|+-|++.++|..|+..|.+.|.....+ ...+.++|-+....|+|..|+..+.+++..+|.+
T Consensus 79 E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h------ 152 (390)
T KOG0551|consen 79 EQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTH------ 152 (390)
T ss_pred HHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcch------
Confidence 477788889999999999999999999999875443 4678899999999999999999999999999998
Q ss_pred HHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCC
Q 009278 324 IARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHR 360 (538)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 360 (538)
..++++-+.++..+.+ +.+|..+.+..+....
T Consensus 153 -~Ka~~R~Akc~~eLe~----~~~a~nw~ee~~~~d~ 184 (390)
T KOG0551|consen 153 -LKAYIRGAKCLLELER----FAEAVNWCEEGLQIDD 184 (390)
T ss_pred -hhhhhhhhHHHHHHHH----HHHHHHHHhhhhhhhH
Confidence 7788888888888888 9999999998877543
No 250
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.90 E-value=0.022 Score=53.50 Aligned_cols=66 Identities=18% Similarity=0.170 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCC----CHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 009278 247 KEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDE----DISYLTNRAAVYLEMGKYEECIKDCDKAVE 312 (538)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 312 (538)
......+...+.+..+.|.++.|...+.++...++. .+.+.+..+.+....|+..+|+..++..+.
T Consensus 143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 457788999999999999999999999999886522 567888899999999999999999999888
No 251
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.89 E-value=0.00033 Score=55.95 Aligned_cols=95 Identities=22% Similarity=0.216 Sum_probs=77.4
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHhccCCcc----------------------hHHHHHHHHHHHhcCCHHHHHHHHHH
Q 009278 4 EAKAKGNAAFSSGDYEAAVRHFTEAISLSPDN----------------------HVLYSNRSAAHASLHNYADALADAKK 61 (538)
Q Consensus 4 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----------------------~~~~~~la~~~~~~g~~~~A~~~~~~ 61 (538)
.+...|......|+.+.++..+.+++.....+ ..+...++..+...|++++|+..+++
T Consensus 8 ~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 87 (146)
T PF03704_consen 8 ALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQR 87 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 45566778888999999999999999874221 24556777888899999999999999
Q ss_pred HhccCCCchHHHHHHHHHHhhccCHHHHHHHHHhhhh
Q 009278 62 TVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLD 98 (538)
Q Consensus 62 al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 98 (538)
++..+|.+..++..+..+|...|+..+|+..|++...
T Consensus 88 ~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 88 ALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998754
No 252
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.89 E-value=0.0088 Score=60.10 Aligned_cols=50 Identities=24% Similarity=0.467 Sum_probs=39.0
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 009278 254 KEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAV 311 (538)
Q Consensus 254 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 311 (538)
...|.-.+..|.|+.|.-+|.. ..-|..++..+..+|+|..|....+++-
T Consensus 1198 ~~vGdrcf~~~~y~aAkl~y~~--------vSN~a~La~TLV~LgeyQ~AVD~aRKAn 1247 (1666)
T KOG0985|consen 1198 QQVGDRCFEEKMYEAAKLLYSN--------VSNFAKLASTLVYLGEYQGAVDAARKAN 1247 (1666)
T ss_pred HHHhHHHhhhhhhHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 4467888888888888887764 3456778888888999999988887764
No 253
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.86 E-value=0.025 Score=53.08 Aligned_cols=139 Identities=19% Similarity=0.219 Sum_probs=84.7
Q ss_pred HHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcCC
Q 009278 325 ARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQK 404 (538)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 404 (538)
+..+...+.+....|. ++.|...+.++....+. ..+..+.+.+..+.++...|+
T Consensus 146 ~~~~l~~a~~aRk~g~----~~~A~~~l~~~~~~~~~----------------------~~~~~~~v~~e~akllw~~g~ 199 (352)
T PF02259_consen 146 AETWLKFAKLARKAGN----FQLALSALNRLFQLNPS----------------------SESLLPRVFLEYAKLLWAQGE 199 (352)
T ss_pred HHHHHHHHHHHHHCCC----cHHHHHHHHHHhccCCc----------------------ccCCCcchHHHHHHHHHHcCC
Confidence 4555666666666666 77776666666653321 112245555666666666666
Q ss_pred hHHHHHHHHHHHhcCCC----------------------------------CchhHhHHHHHHHHh------CCchhHHH
Q 009278 405 YPEAIQHYTESLRRNPK----------------------------------DPRTYSNRAACYTKL------GAMPEGLK 444 (538)
Q Consensus 405 ~~~A~~~~~~al~~~~~----------------------------------~~~~~~~la~~~~~~------~~~~~A~~ 444 (538)
..+|+..++..+..... ...++..+|...... +..++++.
T Consensus 200 ~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~ 279 (352)
T PF02259_consen 200 QEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILK 279 (352)
T ss_pred HHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHH
Confidence 66666666655541000 023455555555555 67778888
Q ss_pred HHHHHHhcCCCchHHHHHHHHHHHHccC-----------------HHHHHHHHHHHhccCCC
Q 009278 445 DADKCIELDPTFSKGYTRKGAIQFFLKE-----------------YDKALETYQEGLKHDPQ 489 (538)
Q Consensus 445 ~~~~al~~~p~~~~~~~~l~~~~~~~g~-----------------~~~A~~~~~~al~~~p~ 489 (538)
.|..+++.+|+...+|+.+|..+...=+ ...|+..|-+++...|.
T Consensus 280 ~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 280 YYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred HHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 8888888888888888888777654311 13467777777777766
No 254
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.86 E-value=0.031 Score=54.05 Aligned_cols=124 Identities=16% Similarity=0.177 Sum_probs=100.5
Q ss_pred cCChHHHHHHHHHHHhcCCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCc----hHHHHHHHHHHHHccCHHHHH
Q 009278 402 QQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTF----SKGYTRKGAIQFFLKEYDKAL 477 (538)
Q Consensus 402 ~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~ 477 (538)
....+.|.+++.......|+.+-.++..|+++...|+.++|+..|++++.....- .-.++.+|+++..+++|++|.
T Consensus 246 ~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~ 325 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA 325 (468)
T ss_pred CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence 4567889999999999999999999999999999999999999999988543322 336789999999999999999
Q ss_pred HHHHHHhccCCCCHH-HHHHHHHHHHHhhhhccCCCChHHHHHHHHhcc
Q 009278 478 ETYQEGLKHDPQNQE-LLDGVRRCVQQINKAGRGELSPEELKERQAKGM 525 (538)
Q Consensus 478 ~~~~~al~~~p~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 525 (538)
.+|.+..+.+.-+.. ..+..+.|+..+|+...+....+++.+.+.++.
T Consensus 326 ~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 326 EYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 999999998766544 445567778899988556555555666665543
No 255
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=97.84 E-value=0.044 Score=55.34 Aligned_cols=84 Identities=10% Similarity=0.027 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHhcc-CCc---chHHHHHHHHHHH-hcCCHHHHHHHHHHHhccCCC--ch----HHHHHHHHHHhhccCH
Q 009278 18 YEAAVRHFTEAISL-SPD---NHVLYSNRSAAHA-SLHNYADALADAKKTVELKPD--WS----KGYSRLGAAHLGLQDY 86 (538)
Q Consensus 18 ~~~A~~~~~~al~~-~p~---~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~--~~----~~~~~la~~~~~~~~~ 86 (538)
...|+.+++-+++. .+. .+.+++.+|.+++ ...+++.|..++++++.+... .. .+.+.++.++.+.+..
T Consensus 37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~ 116 (608)
T PF10345_consen 37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPK 116 (608)
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHH
Confidence 45788888888842 222 5699999999987 788999999999999877633 22 3456778888888877
Q ss_pred HHHHHHHHhhhhcCCC
Q 009278 87 IEAVNSYKKGLDIDPN 102 (538)
Q Consensus 87 ~~A~~~~~~al~~~p~ 102 (538)
. |...+++.++...+
T Consensus 117 ~-a~~~l~~~I~~~~~ 131 (608)
T PF10345_consen 117 A-ALKNLDKAIEDSET 131 (608)
T ss_pred H-HHHHHHHHHHHHhc
Confidence 7 99999998876444
No 256
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.82 E-value=0.0055 Score=55.84 Aligned_cols=182 Identities=16% Similarity=0.112 Sum_probs=119.6
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCCh
Q 009278 283 DISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNP 362 (538)
Q Consensus 283 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~ 362 (538)
++++...+-.+|....+|+.-+...+..-.. |..... ....+.+..+.++.+. +..|+.++|+..+..++..
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~-p~~~~~--~~~~i~~~yafALnRr-n~~gdre~Al~il~~~l~~---- 211 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEAL-PTCDVA--NQHNIKFQYAFALNRR-NKPGDREKALQILLPVLES---- 211 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhcc-Cccchh--cchHHHHHHHHHHhhc-ccCCCHHHHHHHHHHHHhc----
Confidence 4567778888899999999999988876654 221110 0123334444444441 1234488898888886553
Q ss_pred hHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHh---------cCChHHHHHHHHHHHhcCCCCchhHhHHHHHH
Q 009278 363 DTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFK---------QQKYPEAIQHYTESLRRNPKDPRTYSNRAACY 433 (538)
Q Consensus 363 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~---------~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~ 433 (538)
..+.+++.+..+|.+|-. ....++|+..|.++.+.+|+ ...-.+++.++
T Consensus 212 ---------------------~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~-~Y~GIN~AtLL 269 (374)
T PF13281_consen 212 ---------------------DENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPD-YYSGINAATLL 269 (374)
T ss_pred ---------------------cCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCcc-ccchHHHHHHH
Confidence 455667777778877642 22488999999999999964 44445667777
Q ss_pred HHhCCchhHHHHHHHHH-hc-----------CCCchHHHHHHHHHHHHccCHHHHHHHHHHHhccCCCCHHHH
Q 009278 434 TKLGAMPEGLKDADKCI-EL-----------DPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELL 494 (538)
Q Consensus 434 ~~~~~~~~A~~~~~~al-~~-----------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 494 (538)
...|.-.+...-+.+.. .+ .-.+.+.+-.++.+..-.|++++|.+.+++++.+.|..-...
T Consensus 270 ~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~l~ 342 (374)
T PF13281_consen 270 MLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWELE 342 (374)
T ss_pred HHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchhHH
Confidence 77776444433333322 11 123344556777888889999999999999999988765443
No 257
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.81 E-value=0.0059 Score=55.65 Aligned_cols=177 Identities=11% Similarity=0.067 Sum_probs=109.0
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhh----CCCCHHHHHHHHHHHHH---hCCHHHHHHHHHHHHH-ccccchhh
Q 009278 249 KALKEKEAGNAAYKKKEFEKAIEHYSSALEL----DDEDISYLTNRAAVYLE---MGKYEECIKDCDKAVE-RGRELRSD 320 (538)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~---~~~~~~A~~~~~~~~~-~~~~~~~~ 320 (538)
.++....+=..|....+|+.-+...+..-.. .++.+.+.+.+|.++.+ .|+.++|+..+..++. ..+.+++.
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 4555666777788999999999999887766 45677888999999999 9999999999999554 44445333
Q ss_pred HHHHHHHHHHhHHHH--HHhhhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHH
Q 009278 321 FKMIARALTRKGTAL--VKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNE 398 (538)
Q Consensus 321 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~ 398 (538)
+...+.+|-.+-..- .... ..++|+..|.++.. .+|+... -.+++.+
T Consensus 220 ~gL~GRIyKD~~~~s~~~d~~----~ldkAi~~Y~kgFe--------------------------~~~~~Y~-GIN~AtL 268 (374)
T PF13281_consen 220 LGLLGRIYKDLFLESNFTDRE----SLDKAIEWYRKGFE--------------------------IEPDYYS-GINAATL 268 (374)
T ss_pred HHHHHHHHHHHHHHcCccchH----HHHHHHHHHHHHHc--------------------------CCccccc-hHHHHHH
Confidence 433344443332210 1111 15566666666666 5543322 2334444
Q ss_pred HHhcCChHHHHHHHHHHH--------hc----CCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCc
Q 009278 399 FFKQQKYPEAIQHYTESL--------RR----NPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTF 456 (538)
Q Consensus 399 ~~~~~~~~~A~~~~~~al--------~~----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 456 (538)
+...|...+...-.++.. +. .-.+...+-.++.+..-.|++++|+..++++++..|..
T Consensus 269 L~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 269 LMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred HHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 444444222221111111 11 11234455667778888999999999999999887654
No 258
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=0.018 Score=48.60 Aligned_cols=238 Identities=11% Similarity=0.068 Sum_probs=160.2
Q ss_pred HHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHccccchhhHHHHHHHHHHhHHHH
Q 009278 257 GNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMG-KYEECIKDCDKAVERGRELRSDFKMIARALTRKGTAL 335 (538)
Q Consensus 257 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (538)
--++.+...-..|+..-..++..+|.+..+|..+-.++..++ +..+-++++..++..+|++ ..+|...-.+.
T Consensus 50 RAI~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKN-------YQvWHHRr~iv 122 (318)
T KOG0530|consen 50 RAIIAKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKN-------YQVWHHRRVIV 122 (318)
T ss_pred HHHHhccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccc-------hhHHHHHHHHH
Confidence 344556677889999999999999999999888777776654 6778889999999999988 44555555544
Q ss_pred HHhhhcccChh-HHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcCChHHHHHHHHH
Q 009278 336 VKMAKCSKDYE-PAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTE 414 (538)
Q Consensus 336 ~~~~~~~~~~~-~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 414 (538)
...++ +. .-++..+.++. .+..+..+|...-.+...-+.++.-+.+...
T Consensus 123 e~l~d----~s~rELef~~~~l~--------------------------~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~ 172 (318)
T KOG0530|consen 123 ELLGD----PSFRELEFTKLMLD--------------------------DDAKNYHAWSHRQWVLRFFKDYEDELAYADE 172 (318)
T ss_pred HHhcC----cccchHHHHHHHHh--------------------------ccccchhhhHHHHHHHHHHhhHHHHHHHHHH
Confidence 55554 55 56666666666 7778888898888999888999999999999
Q ss_pred HHhcCCCCchhHhHHHHHHHH-hC-----CchhHHHHHHHHHhcCCCchHHHHHHHHHHHH-cc--CHHHHHHHHHHHh-
Q 009278 415 SLRRNPKDPRTYSNRAACYTK-LG-----AMPEGLKDADKCIELDPTFSKGYTRKGAIQFF-LK--EYDKALETYQEGL- 484 (538)
Q Consensus 415 al~~~~~~~~~~~~la~~~~~-~~-----~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~g--~~~~A~~~~~~al- 484 (538)
.++.+-.+-.+|+..-.+... .| ..+.-+.+..+.|...|++..+|..|.-++.. .| ...+-.......+
T Consensus 173 Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~~d~gl~s~s~vv~f~~~l~~ 252 (318)
T KOG0530|consen 173 LLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKDKILLVPNNESAWNYLKGLLELDSGLSSDSKVVSFVENLYL 252 (318)
T ss_pred HHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhccCCcCCchHHHHHHHHhh
Confidence 998877666665543222222 11 23445667778888899999999988888875 44 1222233333332
Q ss_pred ccCCCCHHHHHHHHHHHHHhh--hhccCCCChHHHHHHHHhcc-C-Cchhh
Q 009278 485 KHDPQNQELLDGVRRCVQQIN--KAGRGELSPEELKERQAKGM-Q-DPKFR 531 (538)
Q Consensus 485 ~~~p~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~-~-~p~~~ 531 (538)
...-.+|..+.-+...+..-+ ....+..+..++.+.++... . ||--.
T Consensus 253 ~~~~~sP~lla~l~d~~~e~~l~~~~~~~~~a~~a~~ly~~La~~~DpiR~ 303 (318)
T KOG0530|consen 253 QLPKRSPFLLAFLLDLYAEDALAYKSSAEELARKAVKLYEDLAIKVDPIRK 303 (318)
T ss_pred ccCCCChhHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhhccCcHHH
Confidence 444556777777777773322 22223333345566666554 3 66443
No 259
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.77 E-value=0.0021 Score=51.60 Aligned_cols=138 Identities=14% Similarity=0.091 Sum_probs=96.2
Q ss_pred hhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCch---HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 009278 345 YEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIA---DEEREKGNEFFKQQKYPEAIQHYTESLRRNPK 421 (538)
Q Consensus 345 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~ 421 (538)
..+|-..|.+++..... +.. +.....++....++... -.-..++..+...+++++|+..++.++....+
T Consensus 50 ~~~AS~~Y~~~i~~~~a-------k~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~D 121 (207)
T COG2976 50 AQEASAQYQNAIKAVQA-------KKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKD 121 (207)
T ss_pred HHHHHHHHHHHHHHHhc-------CCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchh
Confidence 44666677776653211 111 22333334333443333 23456788899999999999999999865544
Q ss_pred C---chhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCchHHHHHHHHHHHHccCHHHHHHHHHHHhccCCCCH
Q 009278 422 D---PRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQ 491 (538)
Q Consensus 422 ~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 491 (538)
. +-+-.++|++...+|.+++|+..+....... -.+..-...|.++...|+.++|...|+++++..+++.
T Consensus 122 e~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~-w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~ 193 (207)
T COG2976 122 ENLKALAALRLARVQLQQKKADAALKTLDTIKEES-WAAIVAELRGDILLAKGDKQEARAAYEKALESDASPA 193 (207)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc-HHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChH
Confidence 3 3456789999999999999999987654321 1234456789999999999999999999999985543
No 260
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.76 E-value=0.0057 Score=52.80 Aligned_cols=153 Identities=15% Similarity=0.169 Sum_probs=101.8
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHHHHH
Q 009278 249 KALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARAL 328 (538)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (538)
....-+..+.-....|++.+|...|..++...|.+..+...++.||...|+.+.|...+...-....+. .+
T Consensus 133 ~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~---------~~ 203 (304)
T COG3118 133 EEEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDK---------AA 203 (304)
T ss_pred HHHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhh---------HH
Confidence 344456667788899999999999999999999999999999999999999999988876643222211 00
Q ss_pred HHhHHHHHHhhhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcCChHHH
Q 009278 329 TRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEA 408 (538)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 408 (538)
.. ....++.+.++-...+. ..+.+....+|++..+-+.+|..+...|+++.|
T Consensus 204 ~~--------------l~a~i~ll~qaa~~~~~--------------~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~A 255 (304)
T COG3118 204 HG--------------LQAQIELLEQAAATPEI--------------QDLQRRLAADPDDVEAALALADQLHLVGRNEAA 255 (304)
T ss_pred HH--------------HHHHHHHHHHHhcCCCH--------------HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 00 01112222222222111 112333337888999999999999999999999
Q ss_pred HHHHHHHHhcCCC--CchhHhHHHHHHHHhCC
Q 009278 409 IQHYTESLRRNPK--DPRTYSNRAACYTKLGA 438 (538)
Q Consensus 409 ~~~~~~al~~~~~--~~~~~~~la~~~~~~~~ 438 (538)
.+.+-..+..+-. +..+.-.+-.++...|.
T Consensus 256 le~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~ 287 (304)
T COG3118 256 LEHLLALLRRDRGFEDGEARKTLLELFEAFGP 287 (304)
T ss_pred HHHHHHHHHhcccccCcHHHHHHHHHHHhcCC
Confidence 8888777766542 33444444444444443
No 261
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.74 E-value=0.00094 Score=57.43 Aligned_cols=116 Identities=16% Similarity=0.077 Sum_probs=97.9
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHhccCCcchHHHHHHHHHHHhcCCHHHHHHHHHHH---------------------
Q 009278 4 EAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKT--------------------- 62 (538)
Q Consensus 4 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a--------------------- 62 (538)
.-+..|......|++.+|...|..++...|.+..+...++.|+...|+.+.|...+...
T Consensus 136 ~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~q 215 (304)
T COG3118 136 EALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQ 215 (304)
T ss_pred HHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHH
Confidence 45667889999999999999999999999999999999999999999998877665531
Q ss_pred -------------hccCCCchHHHHHHHHHHhhccCHHHHHHHHHhhhhcCC--CcHHHHhhHHHHHHHHhh
Q 009278 63 -------------VELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDP--NNEALKSGLADAKAAASA 119 (538)
Q Consensus 63 -------------l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~~~ 119 (538)
+..+|++..+-+.+|..+...|+.+.|.+.+-..++.+- ++..+...+..++...|.
T Consensus 216 aa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~ 287 (304)
T COG3118 216 AAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGP 287 (304)
T ss_pred HhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCC
Confidence 123789999999999999999999999999998887654 456677777777777764
No 262
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.71 E-value=0.00093 Score=53.34 Aligned_cols=118 Identities=16% Similarity=0.144 Sum_probs=61.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCchhHhHHHHHHHHhCCchh-HHHHHHHHHhcCCCchHHHHHHHHHHHHccCH
Q 009278 395 KGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPE-GLKDADKCIELDPTFSKGYTRKGAIQFFLKEY 473 (538)
Q Consensus 395 la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~-A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 473 (538)
.|......++...++..+.+++.+...+.-.-..- ..|-. ....+... ...+...++..+...|++
T Consensus 12 ~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~-------~~W~~~~r~~l~~~------~~~~~~~l~~~~~~~~~~ 78 (146)
T PF03704_consen 12 EARAAARAGDPEEAIELLEEALALYRGDFLPDLDD-------EEWVEPERERLREL------YLDALERLAEALLEAGDY 78 (146)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTT-------STTHHHHHHHHHHH------HHHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc-------cHHHHHHHHHHHHH------HHHHHHHHHHHHHhccCH
Confidence 35556677888889999999988765432110000 11111 11111111 233445555566666666
Q ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhccCCCChHHHHHHHHhcc
Q 009278 474 DKALETYQEGLKHDPQNQELLDGVRRCVQQINKAGRGELSPEELKERQAKGM 525 (538)
Q Consensus 474 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 525 (538)
++|+..+++++..+|.+..++..+..++...|+...|...|+++...+...+
T Consensus 79 ~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~el 130 (146)
T PF03704_consen 79 EEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREEL 130 (146)
T ss_dssp HHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHh
Confidence 6666666666666666666666666666666666666666666666655443
No 263
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=97.68 E-value=0.047 Score=50.82 Aligned_cols=95 Identities=12% Similarity=0.076 Sum_probs=85.0
Q ss_pred HHHHHHHHHhccCCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHHHHHhhccC-HHHHHHHHHhhhh
Q 009278 20 AAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQD-YIEAVNSYKKGLD 98 (538)
Q Consensus 20 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~-~~~A~~~~~~al~ 98 (538)
.-+..|+.++...+.|+..|........+.+.+.+--..|.+++..+|+++..|..-|.-.+..+. .+.|...|.++++
T Consensus 89 rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR 168 (568)
T KOG2396|consen 89 RIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLR 168 (568)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhh
Confidence 345679999999999999999999988888989999999999999999999999999988888776 9999999999999
Q ss_pred cCCCcHHHHhhHHHHH
Q 009278 99 IDPNNEALKSGLADAK 114 (538)
Q Consensus 99 ~~p~~~~~~~~l~~~~ 114 (538)
.+|+++..|...-.+.
T Consensus 169 ~npdsp~Lw~eyfrmE 184 (568)
T KOG2396|consen 169 FNPDSPKLWKEYFRME 184 (568)
T ss_pred cCCCChHHHHHHHHHH
Confidence 9999999887655543
No 264
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.67 E-value=0.015 Score=58.55 Aligned_cols=198 Identities=12% Similarity=0.073 Sum_probs=103.9
Q ss_pred HHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHHHHHHHhHHHHH
Q 009278 257 GNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALV 336 (538)
Q Consensus 257 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (538)
.....+.|.|++-++++.-+-+.. ..+.+-..+...|.+.++..+-.+.. ..|+. .-.-..|.-++
T Consensus 1140 i~~a~~~~~~edLv~yL~MaRkk~-~E~~id~eLi~AyAkt~rl~elE~fi-----~gpN~--------A~i~~vGdrcf 1205 (1666)
T KOG0985|consen 1140 IDVASRTGKYEDLVKYLLMARKKV-REPYIDSELIFAYAKTNRLTELEEFI-----AGPNV--------ANIQQVGDRCF 1205 (1666)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHhh-cCccchHHHHHHHHHhchHHHHHHHh-----cCCCc--------hhHHHHhHHHh
Confidence 334445566666666666555432 12233334444555555554433222 23432 11223344444
Q ss_pred HhhhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 009278 337 KMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESL 416 (538)
Q Consensus 337 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 416 (538)
..+. |+.|.-.|...-....-+..+..+|+++.|....+++ ++...|...+..+...+.|.-|.-+=-..+
T Consensus 1206 ~~~~----y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKA-----ns~ktWK~VcfaCvd~~EFrlAQiCGL~ii 1276 (1666)
T KOG0985|consen 1206 EEKM----YEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKA-----NSTKTWKEVCFACVDKEEFRLAQICGLNII 1276 (1666)
T ss_pred hhhh----hHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhc-----cchhHHHHHHHHHhchhhhhHHHhcCceEE
Confidence 4444 6666666655544444444555555555555544432 345566666666666666654432211111
Q ss_pred hcCCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCchHHHHHHHHHHHHccCHHHHHHHHHH
Q 009278 417 RRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQE 482 (538)
Q Consensus 417 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 482 (538)
-+++-+-.+...|...|-+++-+..++.++.+...+-..+..+|.+|.+- ++++-.++++-
T Consensus 1277 ----vhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky-kp~km~EHl~L 1337 (1666)
T KOG0985|consen 1277 ----VHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKY-KPEKMMEHLKL 1337 (1666)
T ss_pred ----EehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc-CHHHHHHHHHH
Confidence 12334455667777888888888888888777666566666677666553 34444444443
No 265
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.67 E-value=0.0012 Score=53.05 Aligned_cols=101 Identities=18% Similarity=0.121 Sum_probs=81.8
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHhccCCc---chHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHHHHH
Q 009278 4 EAKAKGNAAFSSGDYEAAVRHFTEAISLSPD---NHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAH 80 (538)
Q Consensus 4 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 80 (538)
+....|..+...|++++|+..++.++....+ .+.+-..+|.+...+|.+++|+..++..... .-.+..-...|.++
T Consensus 91 aaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~-~w~~~~~elrGDil 169 (207)
T COG2976 91 AALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEE-SWAAIVAELRGDIL 169 (207)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccc-cHHHHHHHHhhhHH
Confidence 4567899999999999999999999865443 2356788999999999999999998864321 12334567899999
Q ss_pred hhccCHHHHHHHHHhhhhcCCCcHH
Q 009278 81 LGLQDYIEAVNSYKKGLDIDPNNEA 105 (538)
Q Consensus 81 ~~~~~~~~A~~~~~~al~~~p~~~~ 105 (538)
...|+-++|+..|+++++..++...
T Consensus 170 l~kg~k~~Ar~ay~kAl~~~~s~~~ 194 (207)
T COG2976 170 LAKGDKQEARAAYEKALESDASPAA 194 (207)
T ss_pred HHcCchHHHHHHHHHHHHccCChHH
Confidence 9999999999999999999855543
No 266
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.61 E-value=9e-05 Score=41.72 Aligned_cols=32 Identities=31% Similarity=0.581 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHhccCCC
Q 009278 458 KGYTRKGAIQFFLKEYDKALETYQEGLKHDPQ 489 (538)
Q Consensus 458 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 489 (538)
.+|+.+|.++..+|++++|+.+|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 35666666666666666666666666666663
No 267
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=97.56 E-value=0.14 Score=53.36 Aligned_cols=106 Identities=12% Similarity=0.042 Sum_probs=86.3
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHhccCCcc---hHHHHHHHHHHHhc----C---CHHHHHHHHHHHhccCCCchHHHHHH
Q 009278 7 AKGNAAFSSGDYEAAVRHFTEAISLSPDN---HVLYSNRSAAHASL----H---NYADALADAKKTVELKPDWSKGYSRL 76 (538)
Q Consensus 7 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~----g---~~~~A~~~~~~al~~~p~~~~~~~~l 76 (538)
...+.++..+.|++|+..|+++-..-|.. .++.+..|.+.+.. | .+.+|+..|++ +.-.|.-|--|...
T Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 558 (932)
T PRK13184 480 AVPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSY-LHGGVGAPLEYLGK 558 (932)
T ss_pred cCcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHH-hcCCCCCchHHHhH
Confidence 34567888999999999999999998864 47888888887643 2 57888888887 44567778889999
Q ss_pred HHHHhhccCHHHHHHHHHhhhhcCCCcHHHHhhHHHH
Q 009278 77 GAAHLGLQDYIEAVNSYKKGLDIDPNNEALKSGLADA 113 (538)
Q Consensus 77 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 113 (538)
|.+|..+|++++-+++|.-|++..|+++..-...-.+
T Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (932)
T PRK13184 559 ALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHL 595 (932)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHH
Confidence 9999999999999999999999999998765444333
No 268
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.54 E-value=0.00011 Score=41.38 Aligned_cols=30 Identities=33% Similarity=0.477 Sum_probs=16.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhccCC
Q 009278 38 LYSNRSAAHASLHNYADALADAKKTVELKP 67 (538)
Q Consensus 38 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p 67 (538)
+|+.+|.+|..+|++++|+..|+++++++|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 455555555555555555555555555555
No 269
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.48 E-value=0.041 Score=53.23 Aligned_cols=143 Identities=16% Similarity=0.158 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHHHH
Q 009278 248 EKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARA 327 (538)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 327 (538)
....++..+|..+.....|++|.++|...-. .-+...|+++..+|++- +.....-|++.+....++++
T Consensus 794 ~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~--------~e~~~ecly~le~f~~L----E~la~~Lpe~s~llp~~a~m 861 (1189)
T KOG2041|consen 794 GKEDAFRNIGETFAEMMEWEEAAKYYSYCGD--------TENQIECLYRLELFGEL----EVLARTLPEDSELLPVMADM 861 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------hHhHHHHHHHHHhhhhH----HHHHHhcCcccchHHHHHHH
Confidence 4567889999999999999999999987532 23567788888877764 34444567776666666676
Q ss_pred HHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcCChHH
Q 009278 328 LTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPE 407 (538)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 407 (538)
+...|. -++|++.|-+.-.-.........++++.+|.+..++. .-|.........+--+...++.-+
T Consensus 862 f~svGM-----------C~qAV~a~Lr~s~pkaAv~tCv~LnQW~~avelaq~~--~l~qv~tliak~aaqll~~~~~~e 928 (1189)
T KOG2041|consen 862 FTSVGM-----------CDQAVEAYLRRSLPKAAVHTCVELNQWGEAVELAQRF--QLPQVQTLIAKQAAQLLADANHME 928 (1189)
T ss_pred HHhhch-----------HHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHhc--cchhHHHHHHHHHHHHHhhcchHH
Confidence 666665 7778777755443222234556677777777765442 112222223333444556666777
Q ss_pred HHHHHHHH
Q 009278 408 AIQHYTES 415 (538)
Q Consensus 408 A~~~~~~a 415 (538)
|++..+++
T Consensus 929 aIe~~Rka 936 (1189)
T KOG2041|consen 929 AIEKDRKA 936 (1189)
T ss_pred HHHHhhhc
Confidence 77766665
No 270
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=97.36 E-value=0.21 Score=50.53 Aligned_cols=215 Identities=14% Similarity=0.134 Sum_probs=117.1
Q ss_pred hcccHHHHHHHHHHHHhhC--CCCHHH----HHHHHHHHHHhCCHHHHHHHHHHHHHcc------ccchhhHHHHHHHHH
Q 009278 262 KKKEFEKAIEHYSSALELD--DEDISY----LTNRAAVYLEMGKYEECIKDCDKAVERG------RELRSDFKMIARALT 329 (538)
Q Consensus 262 ~~~~~~~A~~~~~~al~~~--p~~~~~----~~~la~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~~~~~~~ 329 (538)
..+++..|++.++...... +.++.+ ....+.+....+..+++++..+++.... |+..... -.++.
T Consensus 151 ~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~q---L~~~~ 227 (608)
T PF10345_consen 151 QHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQ---LKALF 227 (608)
T ss_pred hcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHH---HHHHH
Confidence 3489999999999988765 344433 3344666777788888888888875422 2221111 22333
Q ss_pred HhHHHHHHhhhcccChhHHHHHHH---HHHhcCCCh--------h--HHHhhhhHHHHHHHHHHHHH-cCCC--chHHHH
Q 009278 330 RKGTALVKMAKCSKDYEPAIETFQ---KALTEHRNP--------D--TLKKLNEAEKAKKELEQQEI-FDPK--IADEER 393 (538)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~A~~~~~---~~~~~~~~~--------~--~~~~~~~~~~a~~~~~~~~~-~~~~--~~~~~~ 393 (538)
.+-.+...... +++..+...++ ..+...... + .....+....+-....-.+. ++.. ..-+|.
T Consensus 228 lll~l~~~l~~--~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~ 305 (608)
T PF10345_consen 228 LLLDLCCSLQQ--GDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYF 305 (608)
T ss_pred HHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHH
Confidence 33333222222 11444444433 333211110 0 00000000000000000000 0000 112334
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcC-------CCCc-------------------hhHhHHHHHHHHhCCchhHHHHHH
Q 009278 394 EKGNEFFKQQKYPEAIQHYTESLRRN-------PKDP-------------------RTYSNRAACYTKLGAMPEGLKDAD 447 (538)
Q Consensus 394 ~la~~~~~~~~~~~A~~~~~~al~~~-------~~~~-------------------~~~~~la~~~~~~~~~~~A~~~~~ 447 (538)
.-|......+..++|.+++.++++.- +..+ .+....+.+.+-.+++..|.....
T Consensus 306 lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~ 385 (608)
T PF10345_consen 306 LSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELE 385 (608)
T ss_pred HHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 44666777787778888888877431 1111 234567778888999999999988
Q ss_pred HHHhcC---CC------chHHHHHHHHHHHHccCHHHHHHHHH
Q 009278 448 KCIELD---PT------FSKGYTRKGAIQFFLKEYDKALETYQ 481 (538)
Q Consensus 448 ~al~~~---p~------~~~~~~~l~~~~~~~g~~~~A~~~~~ 481 (538)
.+.... |. .+..++..|..+...|+.+.|...|.
T Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 386 FMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 777653 22 36678899999999999999999998
No 271
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.34 E-value=0.42 Score=53.55 Aligned_cols=156 Identities=12% Similarity=0.061 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHHHccccchhhHHHHHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHH
Q 009278 300 YEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELE 379 (538)
Q Consensus 300 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 379 (538)
..+-+-.+++++-.--.++.....+++.|...+++....|+ ++.|...+-++.+.
T Consensus 1645 ~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~----~q~A~nall~A~e~--------------------- 1699 (2382)
T KOG0890|consen 1645 IKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGH----LQRAQNALLNAKES--------------------- 1699 (2382)
T ss_pred HHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhccc----HHHHHHHHHhhhhc---------------------
Confidence 44555555555432222223344558999999998888888 99998888777762
Q ss_pred HHHHcCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC--------c---------hhHhHHHHHHHHhCCc--h
Q 009278 380 QQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKD--------P---------RTYSNRAACYTKLGAM--P 440 (538)
Q Consensus 380 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~--------~---------~~~~~la~~~~~~~~~--~ 440 (538)
.-+.++...|..+...|+-..|+..+++.++.+-.+ | .+...++.-....|++ +
T Consensus 1700 -------r~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~ 1772 (2382)
T KOG0890|consen 1700 -------RLPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESK 1772 (2382)
T ss_pred -------ccchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHH
Confidence 256778888999999999999999999888553211 1 1233333444444443 3
Q ss_pred hHHHHHHHHHhcCCCchHHHHHHHHHHHH------------ccCHHH---HHHHHHHHhccC
Q 009278 441 EGLKDADKCIELDPTFSKGYTRKGAIQFF------------LKEYDK---ALETYQEGLKHD 487 (538)
Q Consensus 441 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~------------~g~~~~---A~~~~~~al~~~ 487 (538)
.-+++|..+.+..|.....++.+|..|.+ .|++.. ++..|.+++...
T Consensus 1773 ~ilk~Y~~~~ail~ewe~~hy~l~~yy~kll~~~~~~~~E~~g~~~~~l~~~~~~~~sl~yg 1834 (2382)
T KOG0890|consen 1773 DILKYYHDAKAILPEWEDKHYHLGKYYDKLLEDYKSNKMEKSGRVLSLLKAIYFFGRALYYG 1834 (2382)
T ss_pred HHHHHHHHHHHHcccccCceeeHHHHHHHHhhhhhcccccccccHHHHHHHHHHHHHHHHhc
Confidence 45678888888888777777777754432 244444 555556666554
No 272
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=97.32 E-value=0.0025 Score=46.14 Aligned_cols=92 Identities=22% Similarity=0.294 Sum_probs=77.0
Q ss_pred HHHHHhhcCCHHHHHHHHHHHhccCCcch---HHHHHHHHHHHhcCC-----------HHHHHHHHHHHhccCCCchHHH
Q 009278 8 KGNAAFSSGDYEAAVRHFTEAISLSPDNH---VLYSNRSAAHASLHN-----------YADALADAKKTVELKPDWSKGY 73 (538)
Q Consensus 8 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~-----------~~~A~~~~~~al~~~p~~~~~~ 73 (538)
+|..++..||+-+|++..+..+...+++. ..+..-|.++..+.. .-.++++|.++..+.|..+..+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L 81 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL 81 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence 57889999999999999999999988766 556667777765542 4558999999999999999999
Q ss_pred HHHHHHHhhccCHHHHHHHHHhhhhc
Q 009278 74 SRLGAAHLGLQDYIEAVNSYKKGLDI 99 (538)
Q Consensus 74 ~~la~~~~~~~~~~~A~~~~~~al~~ 99 (538)
+.+|.-+-....|++++.--++++.+
T Consensus 82 ~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 82 FELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 99998887788888998888888765
No 273
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.32 E-value=0.14 Score=49.71 Aligned_cols=196 Identities=14% Similarity=0.094 Sum_probs=126.8
Q ss_pred HHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHHHHHHHhHHHHH
Q 009278 257 GNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALV 336 (538)
Q Consensus 257 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (538)
+.+-.--|+|++|.+.|-.+-+. + .-..++...|+|-.-.+.++..- ....-.....++..+|..+.
T Consensus 741 aei~~~~g~feeaek~yld~drr---D-----LAielr~klgDwfrV~qL~r~g~-----~d~dD~~~e~A~r~ig~~fa 807 (1189)
T KOG2041|consen 741 AEISAFYGEFEEAEKLYLDADRR---D-----LAIELRKKLGDWFRVYQLIRNGG-----SDDDDEGKEDAFRNIGETFA 807 (1189)
T ss_pred HhHhhhhcchhHhhhhhhccchh---h-----hhHHHHHhhhhHHHHHHHHHccC-----CCcchHHHHHHHHHHHHHHH
Confidence 33444458999999988665222 2 12245566777776665554321 11222334788999999999
Q ss_pred HhhhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 009278 337 KMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESL 416 (538)
Q Consensus 337 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 416 (538)
.+.. +++|.++|...-......+++..+..+++-..+. ..-|++...+-.+|.++...|--++|.+.|-+.-
T Consensus 808 ~~~~----We~A~~yY~~~~~~e~~~ecly~le~f~~LE~la----~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s 879 (1189)
T KOG2041|consen 808 EMME----WEEAAKYYSYCGDTENQIECLYRLELFGELEVLA----RTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRS 879 (1189)
T ss_pred HHHH----HHHHHHHHHhccchHhHHHHHHHHHhhhhHHHHH----HhcCcccchHHHHHHHHHhhchHHHHHHHHHhcc
Confidence 9999 9999999988877666667777777766544433 3567888888899999999999999998886532
Q ss_pred hcCCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCchHHHHHHHHHHHHccCHHHHHHHHHHH
Q 009278 417 RRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEG 483 (538)
Q Consensus 417 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 483 (538)
.| . ........+++|.+|.+..++-- -|.-.......+.-+...++.-+|++.++++
T Consensus 880 --~p---k---aAv~tCv~LnQW~~avelaq~~~--l~qv~tliak~aaqll~~~~~~eaIe~~Rka 936 (1189)
T KOG2041|consen 880 --LP---K---AAVHTCVELNQWGEAVELAQRFQ--LPQVQTLIAKQAAQLLADANHMEAIEKDRKA 936 (1189)
T ss_pred --Cc---H---HHHHHHHHHHHHHHHHHHHHhcc--chhHHHHHHHHHHHHHhhcchHHHHHHhhhc
Confidence 22 1 11233456777888877665421 1332223333344455667777777777776
No 274
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=97.30 E-value=0.0084 Score=55.41 Aligned_cols=170 Identities=12% Similarity=-0.013 Sum_probs=110.6
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHHHHHHHhHHHHHHhhhcccChhHHHHHHHH
Q 009278 275 SALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQK 354 (538)
Q Consensus 275 ~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 354 (538)
..+..+|.+.+++..++.++..+|+...|.+.+++++-...............-...|.+...-
T Consensus 31 ~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~---------------- 94 (360)
T PF04910_consen 31 NLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDY---------------- 94 (360)
T ss_pred HHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCC----------------
Confidence 3356799999999999999999999999999999987643211000000000000001000000
Q ss_pred HHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCc---hHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC-Cch-hHhHH
Q 009278 355 ALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKI---ADEEREKGNEFFKQQKYPEAIQHYTESLRRNPK-DPR-TYSNR 429 (538)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~-~~~~l 429 (538)
..+.| ..+.+.....+.++|-+..|.++.+-.+.++|. ||- +++.+
T Consensus 95 -----------------------------~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~I 145 (360)
T PF04910_consen 95 -----------------------------RRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFI 145 (360)
T ss_pred -----------------------------ccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHH
Confidence 11222 234455667778899999999999999999998 664 44444
Q ss_pred HHHHHHhCCchhHHHHHHHHHhcCC-----CchHHHHHHHHHHHHccCH---------------HHHHHHHHHHhccCCC
Q 009278 430 AACYTKLGAMPEGLKDADKCIELDP-----TFSKGYTRKGAIQFFLKEY---------------DKALETYQEGLKHDPQ 489 (538)
Q Consensus 430 a~~~~~~~~~~~A~~~~~~al~~~p-----~~~~~~~~l~~~~~~~g~~---------------~~A~~~~~~al~~~p~ 489 (538)
-....+.++++--+..++....... .-|..-+..+.+++..++. +.|...+.+|+...|.
T Consensus 146 D~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 146 DYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred HHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 4555667777777777776554211 1345667788888888888 8999999999988774
No 275
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=0.087 Score=44.73 Aligned_cols=81 Identities=12% Similarity=0.143 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHH-HHHHHHHHHHHccccchhhHHHHHHHHHHhHHHHHHhhhcccC
Q 009278 266 FEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYE-ECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKD 344 (538)
Q Consensus 266 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~-~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (538)
..+-++++.++++.+|.+..+|..+-.+....|++. .-++..+.++..+.++-. +|...-.+....+.
T Consensus 94 L~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYH-------aWshRqW~~r~F~~---- 162 (318)
T KOG0530|consen 94 LNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYH-------AWSHRQWVLRFFKD---- 162 (318)
T ss_pred HHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchh-------hhHHHHHHHHHHhh----
Confidence 344555666666666666666666666666666655 555666666665555422 22222333333333
Q ss_pred hhHHHHHHHHHHh
Q 009278 345 YEPAIETFQKALT 357 (538)
Q Consensus 345 ~~~A~~~~~~~~~ 357 (538)
++.-+.+..+.++
T Consensus 163 ~~~EL~y~~~Lle 175 (318)
T KOG0530|consen 163 YEDELAYADELLE 175 (318)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555555
No 276
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.30 E-value=0.24 Score=49.85 Aligned_cols=213 Identities=16% Similarity=0.044 Sum_probs=133.9
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCC--C-------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchh
Q 009278 249 KALKEKEAGNAAYKKKEFEKAIEHYSSALELDDE--D-------ISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRS 319 (538)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--~-------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 319 (538)
.+......+.......++.+|..++.++...-|. . ....-..|.+....|++++|++..+.++..-|....
T Consensus 414 ~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~ 493 (894)
T COG2909 414 TPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAY 493 (894)
T ss_pred CchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccc
Confidence 4455566688888899999999999888765443 1 244556678888999999999999999998887643
Q ss_pred hHHHHHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHH
Q 009278 320 DFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEF 399 (538)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~ 399 (538)
... ..++...|.+..-.|+ +++|..+...+.+.....+ ..+-...+....+.++
T Consensus 494 ~~r--~~~~sv~~~a~~~~G~----~~~Al~~~~~a~~~a~~~~--------------------~~~l~~~~~~~~s~il 547 (894)
T COG2909 494 RSR--IVALSVLGEAAHIRGE----LTQALALMQQAEQMARQHD--------------------VYHLALWSLLQQSEIL 547 (894)
T ss_pred hhh--hhhhhhhhHHHHHhch----HHHHHHHHHHHHHHHHHcc--------------------cHHHHHHHHHHHHHHH
Confidence 332 5566777777777777 9999998888877322111 1111223334456777
Q ss_pred HhcCC--hHHHHHHHHHHH----hcCCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhc----CCCchH---HHHHHHHH
Q 009278 400 FKQQK--YPEAIQHYTESL----RRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIEL----DPTFSK---GYTRKGAI 466 (538)
Q Consensus 400 ~~~~~--~~~A~~~~~~al----~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~----~p~~~~---~~~~l~~~ 466 (538)
..+|+ +.+....|...- ...|.+.......+.++...-+++.+.......++. .|.... +++.++.+
T Consensus 548 ~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l 627 (894)
T COG2909 548 EAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAEL 627 (894)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHH
Confidence 77773 333333333322 223333333333333333333366665555555544 232222 23478888
Q ss_pred HHHccCHHHHHHHHHHHhccC
Q 009278 467 QFFLKEYDKALETYQEGLKHD 487 (538)
Q Consensus 467 ~~~~g~~~~A~~~~~~al~~~ 487 (538)
.+..|+.++|...+.....+-
T Consensus 628 ~~~~Gdl~~A~~~l~~~~~l~ 648 (894)
T COG2909 628 EFLRGDLDKALAQLDELERLL 648 (894)
T ss_pred HHhcCCHHHHHHHHHHHHHHh
Confidence 999999999998888876653
No 277
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.28 E-value=0.00043 Score=38.54 Aligned_cols=30 Identities=17% Similarity=0.259 Sum_probs=13.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhccCCC
Q 009278 39 YSNRSAAHASLHNYADALADAKKTVELKPD 68 (538)
Q Consensus 39 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 68 (538)
++.+|.++...|++++|+..|++++...|+
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 444444444444444444444444444443
No 278
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.26 E-value=0.0013 Score=40.77 Aligned_cols=39 Identities=21% Similarity=0.187 Sum_probs=23.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHH
Q 009278 38 LYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRL 76 (538)
Q Consensus 38 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 76 (538)
.++.+|..++++|+|.+|..+++.+++..|+|..+....
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~ 41 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLK 41 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence 456666666666666666666666666666666554443
No 279
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.26 E-value=0.002 Score=40.03 Aligned_cols=45 Identities=18% Similarity=0.118 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHH
Q 009278 459 GYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDGVRRCVQQ 503 (538)
Q Consensus 459 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 503 (538)
.++.+|..+.++|+|.+|..+.+.++++.|+|.++......+..+
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~~ 47 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIEDK 47 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Confidence 456777778888888888888888888888887776655554443
No 280
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=97.26 E-value=0.019 Score=52.57 Aligned_cols=95 Identities=11% Similarity=0.082 Sum_probs=79.4
Q ss_pred HHHHHHHhccCCcchHHHHHHHHHHHhcCC------------HHHHHHHHHHHhccCCCchHHHHHHHHHHhhccCHHHH
Q 009278 22 VRHFTEAISLSPDNHVLYSNRSAAHASLHN------------YADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEA 89 (538)
Q Consensus 22 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~------------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A 89 (538)
...|++.+..+|.+..+|..+....-..-. .+.-+..+++|++.+|++...+..+-.+.....+.++.
T Consensus 5 ~~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l 84 (321)
T PF08424_consen 5 TAELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKL 84 (321)
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 356888999999999999998876654432 45667899999999999999999998898899999999
Q ss_pred HHHHHhhhhcCCCcHHHHhhHHHHHHH
Q 009278 90 VNSYKKGLDIDPNNEALKSGLADAKAA 116 (538)
Q Consensus 90 ~~~~~~al~~~p~~~~~~~~l~~~~~~ 116 (538)
.+-+++++..+|++...|..+......
T Consensus 85 ~~~we~~l~~~~~~~~LW~~yL~~~q~ 111 (321)
T PF08424_consen 85 AKKWEELLFKNPGSPELWREYLDFRQS 111 (321)
T ss_pred HHHHHHHHHHCCCChHHHHHHHHHHHH
Confidence 999999999999999988876655433
No 281
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.25 E-value=0.14 Score=45.98 Aligned_cols=224 Identities=17% Similarity=0.117 Sum_probs=128.0
Q ss_pred HHhcccHHHHHHHHHHHHhhC----CCC----HHHHHHHHHHHHHhC-CHHHHHHHHHHHHHcc-------ccchhhHHH
Q 009278 260 AYKKKEFEKAIEHYSSALELD----DED----ISYLTNRAAVYLEMG-KYEECIKDCDKAVERG-------RELRSDFKM 323 (538)
Q Consensus 260 ~~~~~~~~~A~~~~~~al~~~----p~~----~~~~~~la~~~~~~~-~~~~A~~~~~~~~~~~-------~~~~~~~~~ 323 (538)
...+|+++.|..++.++-... |+. ...+++.|......+ +++.|...++++.+.- ...+.....
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 356899999999999987654 322 256777888888889 9999999999998872 223344455
Q ss_pred HHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCCh-h-------HHHhhhhHHHHHHHHHHHHHcCC-CchHHHHH
Q 009278 324 IARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNP-D-------TLKKLNEAEKAKKELEQQEIFDP-KIADEERE 394 (538)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~-------~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~ 394 (538)
...++..++.++...+.. ...++|....+.+-...++. . ++...++.+.+.+.+.+++...+ .....-..
T Consensus 83 r~~iL~~La~~~l~~~~~-~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~ 161 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTY-ESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSI 161 (278)
T ss_pred HHHHHHHHHHHHHcCCCh-HHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHH
Confidence 577788888888776651 12445666666665555542 2 12223456777777777776543 11211111
Q ss_pred HHHH-HHhcCChHHHHHHHHHHHhcCCCCchh-HhHHHHH---HHHhC--CchhH--HHHHHHHHh----c--CCCch--
Q 009278 395 KGNE-FFKQQKYPEAIQHYTESLRRNPKDPRT-YSNRAAC---YTKLG--AMPEG--LKDADKCIE----L--DPTFS-- 457 (538)
Q Consensus 395 la~~-~~~~~~~~~A~~~~~~al~~~~~~~~~-~~~la~~---~~~~~--~~~~A--~~~~~~al~----~--~p~~~-- 457 (538)
+..+ .........|...+...+........- |.....+ +...+ +.... ++.....+. . .|-.+
T Consensus 162 l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~ 241 (278)
T PF08631_consen 162 LHHIKQLAEKSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEA 241 (278)
T ss_pred HHHHHHHHhhCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 2222 122344556777776666432221111 3332222 22222 11222 223322222 1 12222
Q ss_pred -----HHHHHHHHHHHHccCHHHHHHHHHHHh
Q 009278 458 -----KGYTRKGAIQFFLKEYDKALETYQEGL 484 (538)
Q Consensus 458 -----~~~~~l~~~~~~~g~~~~A~~~~~~al 484 (538)
..+.+.|...++.++|.+|..+|+-++
T Consensus 242 ~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 242 ASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 235677888889999999999998766
No 282
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=97.25 E-value=0.056 Score=49.14 Aligned_cols=168 Identities=16% Similarity=0.106 Sum_probs=117.2
Q ss_pred HhCCHHHHHHHHHHHHHccccchhhHHHHHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHH
Q 009278 296 EMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAK 375 (538)
Q Consensus 296 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~ 375 (538)
..+++..+...+.++-.... ......++.++..-.....+..+|+.+|..+..
T Consensus 53 ~~~~~~~a~~~~~~a~~~~~---------~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~------------------ 105 (292)
T COG0790 53 YPPDYAKALKSYEKAAELGD---------AAALALLGQMYGAGKGVSRDKTKAADWYRCAAA------------------ 105 (292)
T ss_pred ccccHHHHHHHHHHhhhcCC---------hHHHHHHHHHHHhccCccccHHHHHHHHHHHhh------------------
Confidence 44556666666666554211 245556666666555545557778888875543
Q ss_pred HHHHHHHHcCCCchHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCC-chhHhHHHHHHHHhC-------CchhHH
Q 009278 376 KELEQQEIFDPKIADEEREKGNEFFK----QQKYPEAIQHYTESLRRNPKD-PRTYSNRAACYTKLG-------AMPEGL 443 (538)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~~~~-------~~~~A~ 443 (538)
...+...+.+|.++.. ..++.+|..+|+++....... ..+.+.+|.+|..-+ +...|.
T Consensus 106 ----------~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~ 175 (292)
T COG0790 106 ----------DGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKAL 175 (292)
T ss_pred ----------cccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHH
Confidence 5667778888888887 458999999999998775433 244777888877642 233788
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHHHH----ccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhh
Q 009278 444 KDADKCIELDPTFSKGYTRKGAIQFF----LKEYDKALETYQEGLKHDPQNQELLDGVRRCVQQIN 505 (538)
Q Consensus 444 ~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 505 (538)
..|.++-... ++.+.+.+|.+|.. ..++.+|..+|.++-+... ......++ ++...|
T Consensus 176 ~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g 236 (292)
T COG0790 176 YLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNG 236 (292)
T ss_pred HHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcC
Confidence 8888887765 67888899988865 3488999999999988876 77777777 665555
No 283
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=97.22 E-value=0.16 Score=46.18 Aligned_cols=192 Identities=18% Similarity=0.162 Sum_probs=134.4
Q ss_pred HHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh----CCHHHHHHHHHHHHHccccchhhHHHHHHHHHHhHH
Q 009278 258 NAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEM----GKYEECIKDCDKAVERGRELRSDFKMIARALTRKGT 333 (538)
Q Consensus 258 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (538)
......+++..|...+..+-.. .+......++.+|... .+..+|...|..+.... + ....+.+|.
T Consensus 49 ~~~~~~~~~~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g--~-------~~a~~~lg~ 117 (292)
T COG0790 49 AGSAYPPDYAKALKSYEKAAEL--GDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADG--L-------AEALFNLGL 117 (292)
T ss_pred ccccccccHHHHHHHHHHhhhc--CChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcc--c-------HHHHHhHHH
Confidence 3344678889999999888763 3346777888887754 46788999998655432 2 456666777
Q ss_pred HHHHhhhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcC-------ChH
Q 009278 334 ALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQ-------KYP 406 (538)
Q Consensus 334 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~-------~~~ 406 (538)
++..-.-...+..+|..+|.++....... -......+|.++..-. +..
T Consensus 118 ~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~-------------------------a~~~~~~l~~~~~~g~~~~~~~~~~~ 172 (292)
T COG0790 118 MYANGRGVPLDLVKALKYYEKAAKLGNVE-------------------------AALAMYRLGLAYLSGLQALAVAYDDK 172 (292)
T ss_pred HHhcCCCcccCHHHHHHHHHHHHHcCChh-------------------------HHHHHHHHHHHHHcChhhhcccHHHH
Confidence 66653223345889999999988742211 0233566666666541 234
Q ss_pred HHHHHHHHHHhcCCCCchhHhHHHHHHHH----hCCchhHHHHHHHHHhcCCCchHHHHHHHHHHHHcc-----------
Q 009278 407 EAIQHYTESLRRNPKDPRTYSNRAACYTK----LGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLK----------- 471 (538)
Q Consensus 407 ~A~~~~~~al~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g----------- 471 (538)
.|...|.++-... ++.+...+|.+|.. ..++.+|..+|.++-+... ....+.++ ++...|
T Consensus 173 ~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~ 247 (292)
T COG0790 173 KALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTA 247 (292)
T ss_pred hHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhccc
Confidence 7888888887765 77888899988865 3478999999999999866 78888888 666665
Q ss_pred ----CHHHHHHHHHHHhccCCCC
Q 009278 472 ----EYDKALETYQEGLKHDPQN 490 (538)
Q Consensus 472 ----~~~~A~~~~~~al~~~p~~ 490 (538)
+...|..++.++....+..
T Consensus 248 ~~~~~~~~a~~~~~~~~~~~~~~ 270 (292)
T COG0790 248 AKEEDKKQALEWLQKACELGFDN 270 (292)
T ss_pred ccCCCHHHHHHHHHHHHHcCChh
Confidence 7778888888887766544
No 284
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=97.20 E-value=0.0013 Score=56.37 Aligned_cols=75 Identities=17% Similarity=0.159 Sum_probs=61.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHHHHHhhccCHHHHHHHHHhhhhcCCCcHHHHhhHHHH
Q 009278 39 YSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNEALKSGLADA 113 (538)
Q Consensus 39 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 113 (538)
-...|.-..+.|+.++|...|+.++.+.|+++.++..+|.+....++.-+|-.+|-+++.++|.+.++....+..
T Consensus 119 Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT 193 (472)
T KOG3824|consen 119 ALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRART 193 (472)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence 344455566788888888888888888888888888888888888888888888888888888888887666554
No 285
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.19 E-value=0.00058 Score=37.98 Aligned_cols=31 Identities=29% Similarity=0.457 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHhccCCC
Q 009278 459 GYTRKGAIQFFLKEYDKALETYQEGLKHDPQ 489 (538)
Q Consensus 459 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 489 (538)
+++.+|.++...|++++|+..|+++++..|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 4455555555555666666666655555554
No 286
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=97.19 E-value=0.0012 Score=61.84 Aligned_cols=109 Identities=17% Similarity=0.179 Sum_probs=96.7
Q ss_pred HHHHHhhcCCHHHHHHHHHHHhccCCcch-HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHHHHHhhccCH
Q 009278 8 KGNAAFSSGDYEAAVRHFTEAISLSPDNH-VLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDY 86 (538)
Q Consensus 8 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~ 86 (538)
.|..+...|+...|+.++..|+...|... ....++|.+.+..|-...|-..+.+++.++...+-.++.+|..++.+.+.
T Consensus 613 aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i 692 (886)
T KOG4507|consen 613 AGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNI 692 (886)
T ss_pred ccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhh
Confidence 34455568999999999999999998643 56789999999999999999999999999988888999999999999999
Q ss_pred HHHHHHHHhhhhcCCCcHHHHhhHHHHHHH
Q 009278 87 IEAVNSYKKGLDIDPNNEALKSGLADAKAA 116 (538)
Q Consensus 87 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 116 (538)
+.|++.|+.|++++|+++.....|-.+...
T Consensus 693 ~~a~~~~~~a~~~~~~~~~~~~~l~~i~c~ 722 (886)
T KOG4507|consen 693 SGALEAFRQALKLTTKCPECENSLKLIRCM 722 (886)
T ss_pred HHHHHHHHHHHhcCCCChhhHHHHHHHHHh
Confidence 999999999999999999988777666553
No 287
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.16 E-value=0.054 Score=46.05 Aligned_cols=51 Identities=22% Similarity=0.413 Sum_probs=43.4
Q ss_pred hcccHHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 009278 262 KKKEFEKAIEHYSSALELDDEDI----SYLTNRAAVYLEMGKYEECIKDCDKAVE 312 (538)
Q Consensus 262 ~~~~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~~~~~~A~~~~~~~~~ 312 (538)
...++++|+.-|++++++.|... .++-.+..+++++|++++-...|.+.+.
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLT 93 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLT 93 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 34589999999999999988753 5677888999999999999999988875
No 288
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.16 E-value=0.2 Score=46.22 Aligned_cols=134 Identities=19% Similarity=0.203 Sum_probs=84.6
Q ss_pred HHhhhh-HHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcCChHHHHH--HHHHHHh---------cCC---CCchhHhHH
Q 009278 365 LKKLNE-AEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQ--HYTESLR---------RNP---KDPRTYSNR 429 (538)
Q Consensus 365 ~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~--~~~~al~---------~~~---~~~~~~~~l 429 (538)
+...|. -++|+..+..++...+.+.......- .+-...|.+|+. .+.+.+. +.| .+.+.-+.+
T Consensus 389 lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~--~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~L 466 (549)
T PF07079_consen 389 LWEIGQCDEKALNLLKLILQFTNYDIECENIVF--LFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFL 466 (549)
T ss_pred HHhcCCccHHHHHHHHHHHHhccccHHHHHHHH--HHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHH
Confidence 344444 67788888888888877764433211 122223444332 1222221 222 123444445
Q ss_pred HH--HHHHhCCchhHHHHHHHHHhcCCCchHHHHHHHHHHHHccCHHHHHHHHHHHhccCCC----CHHHHHHHHHHHHH
Q 009278 430 AA--CYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQ----NQELLDGVRRCVQQ 503 (538)
Q Consensus 430 a~--~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~l~~~~~~ 503 (538)
+. .++..|+|.++.-+-.=..++.| ++.++..+|.++....+|++|..++... -|+ +..+...++-|...
T Consensus 467 aDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L---P~n~~~~dskvqKAl~lCqKh 542 (549)
T PF07079_consen 467 ADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL---PPNERMRDSKVQKALALCQKH 542 (549)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC---CCchhhHHHHHHHHHHHHHHh
Confidence 44 46789999999999999999999 7999999999999999999999998764 332 23444455555444
Q ss_pred h
Q 009278 504 I 504 (538)
Q Consensus 504 ~ 504 (538)
+
T Consensus 543 ~ 543 (549)
T PF07079_consen 543 L 543 (549)
T ss_pred h
Confidence 3
No 289
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.15 E-value=0.35 Score=48.80 Aligned_cols=207 Identities=14% Similarity=-0.011 Sum_probs=119.0
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC-----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHH
Q 009278 251 LKEKEAGNAAYKKKEFEKAIEHYSSALELDDED-----ISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIA 325 (538)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 325 (538)
...-..|.+....|+++.|++..+.++..-|.+ ..+...+|.+..-.|++++|..+...+.+........+ ...
T Consensus 459 e~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~-l~~ 537 (894)
T COG2909 459 EFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYH-LAL 537 (894)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHH-HHH
Confidence 334455788889999999999999999988765 35677889999999999999999999988755443222 223
Q ss_pred HHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcCCh
Q 009278 326 RALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKY 405 (538)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 405 (538)
.+....+.++...|+ -.+.+....+...-. +-+...|.........+.++...-++
T Consensus 538 ~~~~~~s~il~~qGq--~~~a~~~~~~~~~~~----------------------q~l~q~~~~~f~~~~r~~ll~~~~r~ 593 (894)
T COG2909 538 WSLLQQSEILEAQGQ--VARAEQEKAFNLIRE----------------------QHLEQKPRHEFLVRIRAQLLRAWLRL 593 (894)
T ss_pred HHHHHHHHHHHHhhH--HHHHHHHHHHHHHHH----------------------HHhhhcccchhHHHHHHHHHHHHHHH
Confidence 444444555555552 003333333322222 11112233223333333333333335
Q ss_pred HHHHHHHHHHHhc----CCCC--c-hhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCc-hHHH----HH--HHHHHHHcc
Q 009278 406 PEAIQHYTESLRR----NPKD--P-RTYSNRAACYTKLGAMPEGLKDADKCIELDPTF-SKGY----TR--KGAIQFFLK 471 (538)
Q Consensus 406 ~~A~~~~~~al~~----~~~~--~-~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~----~~--l~~~~~~~g 471 (538)
+.+..-....++. .|.. + .+++.++.+++..|++++|...+......-.+. +.++ .. .......+|
T Consensus 594 ~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg 673 (894)
T COG2909 594 DLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQG 673 (894)
T ss_pred hhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccC
Confidence 5555555544433 2221 1 223477888888888888888887776652221 1111 11 112223467
Q ss_pred CHHHHHHHHHH
Q 009278 472 EYDKALETYQE 482 (538)
Q Consensus 472 ~~~~A~~~~~~ 482 (538)
+...|.....+
T Consensus 674 ~~~~a~~~l~~ 684 (894)
T COG2909 674 DKELAAEWLLK 684 (894)
T ss_pred CHHHHHHHHHh
Confidence 88777777766
No 290
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=97.15 E-value=0.005 Score=43.67 Aligned_cols=75 Identities=19% Similarity=0.188 Sum_probs=52.8
Q ss_pred HHHHHHHHhccCCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCc--hHHHHHHHHHHhhccCHHHHHHHHHh
Q 009278 21 AVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDW--SKGYSRLGAAHLGLQDYIEAVNSYKK 95 (538)
Q Consensus 21 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~~~~~~A~~~~~~ 95 (538)
.+..+++.+..+|++..+.+.+|..+...|++++|++.+-.++..+|++ ..+.-.+-.++..+|.-+.-...|++
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RR 83 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRR 83 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHH
Confidence 3567888888999999999999999999999999999999999888765 45555566666666654444444443
No 291
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=97.10 E-value=0.0084 Score=47.03 Aligned_cols=109 Identities=16% Similarity=0.054 Sum_probs=87.2
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHHHhccCCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHHHHHhh
Q 009278 3 DEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLG 82 (538)
Q Consensus 3 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 82 (538)
..++.........++.+++...+...--..|+.+..-..-|+.++..|+|.+|+..++.+....|..+.+--.++.|+..
T Consensus 11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~ 90 (160)
T PF09613_consen 11 GGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYA 90 (160)
T ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Confidence 46788888899999999999999999999999999999999999999999999999999999999999888899999999
Q ss_pred ccCHHHHHHHHHhhhhcCCCcHHHHhhHHHH
Q 009278 83 LQDYIEAVNSYKKGLDIDPNNEALKSGLADA 113 (538)
Q Consensus 83 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 113 (538)
+|+.+= ..+-..+++..+ ++.+......+
T Consensus 91 ~~D~~W-r~~A~evle~~~-d~~a~~Lv~~L 119 (160)
T PF09613_consen 91 LGDPSW-RRYADEVLESGA-DPDARALVRAL 119 (160)
T ss_pred cCChHH-HHHHHHHHhcCC-ChHHHHHHHHH
Confidence 888542 222333444443 44444433333
No 292
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.05 E-value=0.29 Score=46.26 Aligned_cols=116 Identities=8% Similarity=0.030 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHcCCCchHHHHHHHHH-HHhcCChHHHHHHHHHHHhcCCCCchhHhHHHHHHHHhCCchhHHHHHHHHHh
Q 009278 373 KAKKELEQQEIFDPKIADEEREKGNE-FFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIE 451 (538)
Q Consensus 373 ~a~~~~~~~~~~~~~~~~~~~~la~~-~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 451 (538)
.|...|.++.+..-....++..-|.+ |...++..-|..+|+-.++..++++..-......+...++-..|...|++++.
T Consensus 384 aaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~ 463 (656)
T KOG1914|consen 384 AARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLT 463 (656)
T ss_pred HHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHh
Confidence 33334444433333333444444433 45678999999999999999999998888888888999999999999999998
Q ss_pred c--CCC-chHHHHHHHHHHHHccCHHHHHHHHHHHhccCC
Q 009278 452 L--DPT-FSKGYTRKGAIQFFLKEYDKALETYQEGLKHDP 488 (538)
Q Consensus 452 ~--~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 488 (538)
. .|+ ....|..+-..-..-|+...+++.=++-....|
T Consensus 464 s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 464 SVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred ccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 7 333 345666666666778888888887777666666
No 293
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=97.04 E-value=0.052 Score=42.72 Aligned_cols=117 Identities=12% Similarity=-0.043 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCchHHHHHHHHHHHH
Q 009278 390 DEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFF 469 (538)
Q Consensus 390 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 469 (538)
..+..+..+-...++.+++...+.-.-.+.|..+.+-..-|+++...|+|.+|+..++.+....|..+.+--.++.|+..
T Consensus 11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~ 90 (160)
T PF09613_consen 11 GGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYA 90 (160)
T ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Confidence 34555666677888999999999988889999999999999999999999999999999988889989888889999999
Q ss_pred ccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhcc
Q 009278 470 LKEYDKALETYQEGLKHDPQNQELLDGVRRCVQQINKAGR 509 (538)
Q Consensus 470 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~ 509 (538)
+|+..= ..+-..+++..| ++.+...+. .+........
T Consensus 91 ~~D~~W-r~~A~evle~~~-d~~a~~Lv~-~Ll~~~~~~~ 127 (160)
T PF09613_consen 91 LGDPSW-RRYADEVLESGA-DPDARALVR-ALLARADLEP 127 (160)
T ss_pred cCChHH-HHHHHHHHhcCC-ChHHHHHHH-HHHHhccccc
Confidence 888541 122233444444 455544433 3333333333
No 294
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.00 E-value=0.0011 Score=37.61 Aligned_cols=25 Identities=32% Similarity=0.501 Sum_probs=14.7
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHh
Q 009278 460 YTRKGAIQFFLKEYDKALETYQEGL 484 (538)
Q Consensus 460 ~~~l~~~~~~~g~~~~A~~~~~~al 484 (538)
+.++|.+|..+|++++|+.+|++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4556666666666666666666644
No 295
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=96.99 E-value=0.0022 Score=55.10 Aligned_cols=74 Identities=14% Similarity=0.160 Sum_probs=56.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCchHHHHHHHHH
Q 009278 393 REKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAI 466 (538)
Q Consensus 393 ~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 466 (538)
...|.-..+.|+.++|..+|+.++.+.|.+++++..+|......++.-+|-.+|-+++.++|.+.+++.+.+..
T Consensus 120 l~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT 193 (472)
T KOG3824|consen 120 LKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRART 193 (472)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence 34455566778888888888888888888888888888887777778888888888888888888777766653
No 296
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=96.99 E-value=0.019 Score=41.84 Aligned_cols=94 Identities=22% Similarity=0.292 Sum_probs=72.7
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHhccCCc------------chHHHHHHHHHHHhcCCHHHHHHHHHHHhc-------cC
Q 009278 6 KAKGNAAFSSGDYEAAVRHFTEAISLSPD------------NHVLYSNRSAAHASLHNYADALADAKKTVE-------LK 66 (538)
Q Consensus 6 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~-------~~ 66 (538)
...|...+..|-|++|...++++.+.... +..++-.|+.++..+|+|++++...++++. ++
T Consensus 13 Ls~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~ 92 (144)
T PF12968_consen 13 LSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELH 92 (144)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TT
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccc
Confidence 45677788999999999999999875321 356788899999999999998887777774 45
Q ss_pred CCchH----HHHHHHHHHhhccCHHHHHHHHHhhhhc
Q 009278 67 PDWSK----GYSRLGAAHLGLQDYIEAVNSYKKGLDI 99 (538)
Q Consensus 67 p~~~~----~~~~la~~~~~~~~~~~A~~~~~~al~~ 99 (538)
.+... +-+..|..+..+|+.++|+..|+.+-+.
T Consensus 93 qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 93 QDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp STHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 55443 4567889999999999999999998764
No 297
>PRK10941 hypothetical protein; Provisional
Probab=96.98 E-value=0.0071 Score=52.96 Aligned_cols=74 Identities=15% Similarity=0.077 Sum_probs=61.0
Q ss_pred hhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCchHHHHHHHHHHHHccCHHHHHHHHHHHhccCCCCHHHHHHH
Q 009278 424 RTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDGV 497 (538)
Q Consensus 424 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 497 (538)
..+.++-.+|...++++.|+.+.+..+.+.|+++.-+...|.+|.++|.+..|...++..++..|+++.+....
T Consensus 182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik 255 (269)
T PRK10941 182 KLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIR 255 (269)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHH
Confidence 34566777888888888888888888888888888888888888888888888888888888888887765433
No 298
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=96.98 E-value=0.0032 Score=58.41 Aligned_cols=104 Identities=28% Similarity=0.298 Sum_probs=93.1
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHHHhccCCcchHHHHHHHHHHHhc---CCHHHHHHHHHHHhccCCCchHHHHHHHH
Q 009278 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASL---HNYADALADAKKTVELKPDWSKGYSRLGA 78 (538)
Q Consensus 2 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~la~ 78 (538)
++.++..|+-.+..+....|+..|.+++...|.....+.+++.++++. |+.-.|+..+..+++++|....+++.|++
T Consensus 374 ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~ 453 (758)
T KOG1310|consen 374 IEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLAR 453 (758)
T ss_pred HHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHH
Confidence 355677888888888999999999999999999999999999998875 57788999999999999999999999999
Q ss_pred HHhhccCHHHHHHHHHhhhhcCCCcHH
Q 009278 79 AHLGLQDYIEAVNSYKKGLDIDPNNEA 105 (538)
Q Consensus 79 ~~~~~~~~~~A~~~~~~al~~~p~~~~ 105 (538)
++..++++.+|+.+...+....|.+..
T Consensus 454 aL~el~r~~eal~~~~alq~~~Ptd~a 480 (758)
T KOG1310|consen 454 ALNELTRYLEALSCHWALQMSFPTDVA 480 (758)
T ss_pred HHHHHhhHHHhhhhHHHHhhcCchhhh
Confidence 999999999999999888888886644
No 299
>PRK10941 hypothetical protein; Provisional
Probab=96.94 E-value=0.0083 Score=52.54 Aligned_cols=80 Identities=14% Similarity=0.027 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHHHHHhhccCHHHHHHHHHhhhhcCCCcHHHHhhHHHHHHH
Q 009278 37 VLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAA 116 (538)
Q Consensus 37 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 116 (538)
..+.++-.+|.+.++++.|+.+.+..+.+.|+++.-+.-+|.+|.++|.+..|...++..++..|+++.+.....++...
T Consensus 182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l 261 (269)
T PRK10941 182 KLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSI 261 (269)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Confidence 45667778899999999999999999999999999999999999999999999999999999999999987766655444
No 300
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=96.90 E-value=1.1 Score=50.46 Aligned_cols=119 Identities=9% Similarity=0.036 Sum_probs=92.4
Q ss_pred CCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhcC-CC--------
Q 009278 385 DPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELD-PT-------- 455 (538)
Q Consensus 385 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~-------- 455 (538)
+....+.|...|.+....|.++.|....-.|.+.. -+.++...|......|+-..|+..+++.++.+ |+
T Consensus 1666 ~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~ 1743 (2382)
T KOG0890|consen 1666 KSRLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDT 1743 (2382)
T ss_pred cchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCcccc
Confidence 44567899999999999999999999998888776 57889999999999999999999999999763 32
Q ss_pred --c------hHHHHHHHHHHHHccCH--HHHHHHHHHHhccCCCCHHHHHHHHHHHHHhh
Q 009278 456 --F------SKGYTRKGAIQFFLKEY--DKALETYQEGLKHDPQNQELLDGVRRCVQQIN 505 (538)
Q Consensus 456 --~------~~~~~~l~~~~~~~g~~--~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 505 (538)
. ..+...++......|++ .+-+.+|..+.+..|....-++.+|.-+.++-
T Consensus 1744 p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy~kll 1803 (2382)
T KOG0890|consen 1744 PQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKYYDKLL 1803 (2382)
T ss_pred chhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHHHHHHh
Confidence 1 11334444444455553 45678899999999988888888886555443
No 301
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=96.88 E-value=0.047 Score=39.72 Aligned_cols=47 Identities=23% Similarity=0.297 Sum_probs=30.9
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHHHHHHHhHHHHHHhhh
Q 009278 290 RAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAK 340 (538)
Q Consensus 290 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (538)
+|.-++..|++-+|+++.+..+...+++...+ ..+...|.++..+..
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~----~lh~~QG~if~~lA~ 48 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSW----LLHRLQGTIFYKLAK 48 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchH----HHHHHHhHHHHHHHH
Confidence 35667788888888888888888777765432 344555555544443
No 302
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=96.87 E-value=0.095 Score=48.59 Aligned_cols=86 Identities=14% Similarity=-0.030 Sum_probs=67.0
Q ss_pred hccCCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhcc--------------C------------CCc---hHHHHHHHHH
Q 009278 29 ISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVEL--------------K------------PDW---SKGYSRLGAA 79 (538)
Q Consensus 29 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------------~------------p~~---~~~~~~la~~ 79 (538)
+..+|-+.+++..++.++..+|+...|.+.+++|+-. + +.| ..+++.....
T Consensus 33 l~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~ 112 (360)
T PF04910_consen 33 LQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQS 112 (360)
T ss_pred HHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHH
Confidence 3457888999999999999999999999999988621 1 122 2356677888
Q ss_pred HhhccCHHHHHHHHHhhhhcCCC-cHHHHhhHHHHH
Q 009278 80 HLGLQDYIEAVNSYKKGLDIDPN-NEALKSGLADAK 114 (538)
Q Consensus 80 ~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~ 114 (538)
+.+.|-+..|.++.+-.+.++|. |+-........+
T Consensus 113 L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ 148 (360)
T PF04910_consen 113 LGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYY 148 (360)
T ss_pred HHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHH
Confidence 88999999999999999999999 665544444433
No 303
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.86 E-value=0.45 Score=45.19 Aligned_cols=66 Identities=11% Similarity=0.008 Sum_probs=51.1
Q ss_pred hHhHHHHHHHHhCCchhHHHHHHHHHhc---CCC----chHHHHHHHHHHHHccC-HHHHHHHHHHHhccCCCC
Q 009278 425 TYSNRAACYTKLGAMPEGLKDADKCIEL---DPT----FSKGYTRKGAIQFFLKE-YDKALETYQEGLKHDPQN 490 (538)
Q Consensus 425 ~~~~la~~~~~~~~~~~A~~~~~~al~~---~p~----~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~p~~ 490 (538)
-++.+|.++..+|+-..|..+|..+++. ... .|.+++.+|..++.+|. ..++.+++.+|-+...+.
T Consensus 451 k~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY 524 (546)
T KOG3783|consen 451 KYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDY 524 (546)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhcccc
Confidence 4566888888889888888888887743 111 36688899999998888 899999999998876543
No 304
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.84 E-value=0.0015 Score=37.08 Aligned_cols=25 Identities=28% Similarity=0.440 Sum_probs=12.7
Q ss_pred HHHHHHHHhhccCHHHHHHHHHhhh
Q 009278 73 YSRLGAAHLGLQDYIEAVNSYKKGL 97 (538)
Q Consensus 73 ~~~la~~~~~~~~~~~A~~~~~~al 97 (538)
|..+|.+|...|++++|+.+|++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4455555555555555555555533
No 305
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.81 E-value=0.35 Score=43.35 Aligned_cols=173 Identities=17% Similarity=0.056 Sum_probs=116.7
Q ss_pred HHHhCCHHHHHHHHHHHHHcc-ccchhhHHHHHHHHHHhHHHHHHhh-hcccChhHHHHHHHHHHhcCCChhHHHhhhhH
Q 009278 294 YLEMGKYEECIKDCDKAVERG-RELRSDFKMIARALTRKGTALVKMA-KCSKDYEPAIETFQKALTEHRNPDTLKKLNEA 371 (538)
Q Consensus 294 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 371 (538)
....|+++.|..++.++-... ..++.....++..+++.|......+ + ++.|..+++++.+.-..+
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~----~~~a~~wL~~a~~~l~~~--------- 69 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDK----YEEAVKWLQRAYDILEKP--------- 69 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCC----hHHHHHHHHHHHHHHHhh---------
Confidence 357899999999999998766 5667777888999999999999998 8 999999999999852110
Q ss_pred HHHHHHHHHHHHcCCC----chHHHHHHHHHHHhcCChH---HHHHHHHHHHhcCCCCchhHhHHHHHHHHhCCchhHHH
Q 009278 372 EKAKKELEQQEIFDPK----IADEEREKGNEFFKQQKYP---EAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLK 444 (538)
Q Consensus 372 ~~a~~~~~~~~~~~~~----~~~~~~~la~~~~~~~~~~---~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~ 444 (538)
.+.....|+ ...++..++.++...+.++ +|....+.+-...|+.+.++...-.+..+.++.+++.+
T Consensus 70 -------~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~ 142 (278)
T PF08631_consen 70 -------GKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEE 142 (278)
T ss_pred -------hhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHH
Confidence 000012222 2345667888888877754 45556666666778778777666666666888999999
Q ss_pred HHHHHHhcCC-CchHHHHHHHHH-HHHccCHHHHHHHHHHHhcc
Q 009278 445 DADKCIELDP-TFSKGYTRKGAI-QFFLKEYDKALETYQEGLKH 486 (538)
Q Consensus 445 ~~~~al~~~p-~~~~~~~~l~~~-~~~~g~~~~A~~~~~~al~~ 486 (538)
.+.+.+..-+ .....-..+..+ .........|...+...+..
T Consensus 143 ~L~~mi~~~~~~e~~~~~~l~~i~~l~~~~~~~a~~~ld~~l~~ 186 (278)
T PF08631_consen 143 ILMRMIRSVDHSESNFDSILHHIKQLAEKSPELAAFCLDYLLLN 186 (278)
T ss_pred HHHHHHHhcccccchHHHHHHHHHHHHhhCcHHHHHHHHHHHHH
Confidence 9999887643 111111112222 11234456677777666653
No 306
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=96.77 E-value=0.014 Score=41.45 Aligned_cols=65 Identities=9% Similarity=0.137 Sum_probs=40.3
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHHccCHHHHHHHHHHHhccCCCC--HHHHHHHHHHHHHhhhh
Q 009278 443 LKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQN--QELLDGVRRCVQQINKA 507 (538)
Q Consensus 443 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~~~~ 507 (538)
+..+++.++.+|++..+.+.+|..+...|++++|++.+-.++..+|+. ..+...+..+...+|..
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~ 74 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPG 74 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCC
Confidence 445666666777777777777777777777777777777777766543 55566666666666653
No 307
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=96.72 E-value=0.16 Score=46.49 Aligned_cols=110 Identities=15% Similarity=0.064 Sum_probs=79.1
Q ss_pred HHHHHHcCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHhHHHHHHHH---hCCchhHHHHHHHHHhcCC
Q 009278 378 LEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTK---LGAMPEGLKDADKCIELDP 454 (538)
Q Consensus 378 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~---~~~~~~A~~~~~~al~~~p 454 (538)
++++++.+|++...+..+-....+..+.++...-+++++..+|+++.+|...-..... .-.+......|.+++..-.
T Consensus 54 lerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~ 133 (321)
T PF08424_consen 54 LERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALS 133 (321)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHH
Confidence 3333337888888888887888888888888889999999999988888655443332 2246677777777775411
Q ss_pred ------------------CchHHHHHHHHHHHHccCHHHHHHHHHHHhccC
Q 009278 455 ------------------TFSKGYTRKGAIQFFLKEYDKALETYQEGLKHD 487 (538)
Q Consensus 455 ------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 487 (538)
....++..+.....+.|..+.|+..++-.++++
T Consensus 134 ~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 134 RRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 012345667777788999999999999999875
No 308
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.66 E-value=0.004 Score=34.21 Aligned_cols=32 Identities=34% Similarity=0.578 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHhccCCC
Q 009278 458 KGYTRKGAIQFFLKEYDKALETYQEGLKHDPQ 489 (538)
Q Consensus 458 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 489 (538)
.++..+|.++..+|++++|..+|+++++..|+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 34566666666666666666666666666654
No 309
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=96.61 E-value=0.074 Score=45.08 Aligned_cols=99 Identities=16% Similarity=0.039 Sum_probs=54.1
Q ss_pred CHHHHHHHHHHHHHccccchhhHHHHHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHH
Q 009278 299 KYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKEL 378 (538)
Q Consensus 299 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 378 (538)
.+++|+..|.-++-...-........+.++..++.+|...++ .+.....+++|+. .|
T Consensus 92 t~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~----~~~E~~fl~~Al~-------------------~y 148 (214)
T PF09986_consen 92 TLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGD----EENEKRFLRKALE-------------------FY 148 (214)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCC----HHHHHHHHHHHHH-------------------HH
Confidence 445555555544432211111222336666777776666666 4444444444443 22
Q ss_pred HHHHHcC------CCchHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 009278 379 EQQEIFD------PKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNP 420 (538)
Q Consensus 379 ~~~~~~~------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~ 420 (538)
.++.... -+...+.+.+|.+..+.|++++|..+|.+++....
T Consensus 149 ~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 149 EEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence 2222221 12345677788888888888888888888876543
No 310
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=96.49 E-value=0.0049 Score=50.76 Aligned_cols=61 Identities=25% Similarity=0.454 Sum_probs=49.5
Q ss_pred HHHhcCCHHHHHHHHHHHhccCCCchHHHHHHHHHHhhccCHHHHHHHHHhhhhcCCCcHH
Q 009278 45 AHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNEA 105 (538)
Q Consensus 45 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~ 105 (538)
.....++.+.|.+.|.+++.+.|++...|+++|....+.|+++.|...|++.++++|.+..
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~ 64 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG 64 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence 4456778888888888888888888888888888888888888888888888888887643
No 311
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.47 E-value=0.0052 Score=33.69 Aligned_cols=27 Identities=33% Similarity=0.374 Sum_probs=10.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhccC
Q 009278 40 SNRSAAHASLHNYADALADAKKTVELK 66 (538)
Q Consensus 40 ~~la~~~~~~g~~~~A~~~~~~al~~~ 66 (538)
..+|.++...|+++.|+..++++++.+
T Consensus 5 ~~~a~~~~~~~~~~~a~~~~~~~~~~~ 31 (34)
T smart00028 5 YNLGNAYLKLGDYDEALEYYEKALELD 31 (34)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHccC
Confidence 333444444444444444444433333
No 312
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=96.46 E-value=0.16 Score=41.69 Aligned_cols=107 Identities=20% Similarity=0.216 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHH
Q 009278 248 EKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDED---ISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMI 324 (538)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 324 (538)
.-..++..+|..|.+.|+.+.|++.|.++.+..... .+.++.+..+....+++.....++.++-..... ...+...
T Consensus 34 sir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~-~~d~~~~ 112 (177)
T PF10602_consen 34 SIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEK-GGDWERR 112 (177)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc-cchHHHH
Confidence 445788899999999999999999999988876443 467788889999999999999999998775433 3334444
Q ss_pred HHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcC
Q 009278 325 ARALTRKGTALVKMAKCSKDYEPAIETFQKALTEH 359 (538)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 359 (538)
.......|..+...++ |..|...|-.+....
T Consensus 113 nrlk~~~gL~~l~~r~----f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 113 NRLKVYEGLANLAQRD----FKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHHHHHHHhch----HHHHHHHHHccCcCC
Confidence 5566666777777777 999998887776643
No 313
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.45 E-value=0.43 Score=45.27 Aligned_cols=262 Identities=14% Similarity=0.038 Sum_probs=141.2
Q ss_pred HHHHHHHHHHhccCCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCc----hHHHHHHHHHHhhccCHHHHHHHHH
Q 009278 19 EAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDW----SKGYSRLGAAHLGLQDYIEAVNSYK 94 (538)
Q Consensus 19 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~ 94 (538)
+...+.+.......|+++...+..+..+...|+.+.|+..++..+. +.. .-.++.+|.++.-+.+|..|...+.
T Consensus 250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~ 327 (546)
T KOG3783|consen 250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQHQYSRAADSFD 327 (546)
T ss_pred HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 3444455555667888888889999999999998888888888877 332 3457788999999999999999998
Q ss_pred hhhhcCCCcHHHHhhHH-HHHHHHhhcccCCCCCCCCcccccccCCchhhcccCCCCCCCcccHHHHHHHHHhhhcCCCc
Q 009278 95 KGLDIDPNNEALKSGLA-DAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRNMMKDIQRNPNN 173 (538)
Q Consensus 95 ~al~~~p~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 173 (538)
.....+.-..-.+..++ .++..-++..+...... .....+... ...+..+.....-+..-....+.+.....|-+
T Consensus 328 ~L~desdWS~a~Y~Yfa~cc~l~~~~~~q~~~~ne--~~a~~~~k~--~~~l~~~a~K~~P~E~f~~RKverf~~~~~~~ 403 (546)
T KOG3783|consen 328 LLRDESDWSHAFYTYFAGCCLLQNWEVNQGAGGNE--EKAQLYFKV--GEELLANAGKNLPLEKFIVRKVERFVKRGPLN 403 (546)
T ss_pred HHHhhhhhhHHHHHHHHHHHHhccHHHHHhcccch--hHHHHHHHH--HHHHHHhccccCchhHHHHHHHHHHhcccccc
Confidence 88877655555555554 33322211111000000 000000000 00000000000001111222233333333311
Q ss_pred hhhhhchHHHHHHHHHHHhhhcCCCCCCCccccccccCCCCCCCccccccCCCCCCCCCCccccHHHHHHHHhHHHHHHH
Q 009278 174 LNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKEAKERKEKALKE 253 (538)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (538)
+...+.. -+.+..=.|.+...-.... ..+... ........+..+..-.+
T Consensus 404 ~~~~la~-P~~El~Y~Wngf~~~s~~~---l~k~~~---------------------------~~~~~~~~d~Dd~~lk~ 452 (546)
T KOG3783|consen 404 ASILLAS-PYYELAYFWNGFSRMSKNE---LEKMRA---------------------------ELENPKIDDSDDEGLKY 452 (546)
T ss_pred ccccccc-hHHHHHHHHhhcccCChhh---HHHHHH---------------------------HHhccCCCCchHHHHHH
Confidence 1111111 1111111222111111000 000000 00000011223455667
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHhh------CCC-CHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHccccc
Q 009278 254 KEAGNAAYKKKEFEKAIEHYSSALEL------DDE-DISYLTNRAAVYLEMGK-YEECIKDCDKAVERGREL 317 (538)
Q Consensus 254 ~~~~~~~~~~~~~~~A~~~~~~al~~------~p~-~~~~~~~la~~~~~~~~-~~~A~~~~~~~~~~~~~~ 317 (538)
+.+|.++...|+...|..+|...++. ++. -|.+++.+|..+..+|. ..++..++.++-....+.
T Consensus 453 lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY 524 (546)
T KOG3783|consen 453 LLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDY 524 (546)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhcccc
Confidence 88899999999999999999988843 121 36789999999999999 999999999998876554
No 314
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.37 E-value=0.047 Score=42.10 Aligned_cols=85 Identities=15% Similarity=-0.052 Sum_probs=72.7
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHHHhccCCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHHHHHhh
Q 009278 3 DEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLG 82 (538)
Q Consensus 3 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 82 (538)
..+++........++.+++...+...--..|+.+.+-..-|..++..|+|.+|+..++...+..+..+-+--.++.|+..
T Consensus 11 ~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~a 90 (153)
T TIGR02561 11 GGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNA 90 (153)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHh
Confidence 34566667777789999999999888888999999999999999999999999999999888888888888888999988
Q ss_pred ccCHH
Q 009278 83 LQDYI 87 (538)
Q Consensus 83 ~~~~~ 87 (538)
+|+.+
T Consensus 91 l~Dp~ 95 (153)
T TIGR02561 91 KGDAE 95 (153)
T ss_pred cCChH
Confidence 88754
No 315
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=96.33 E-value=0.11 Score=39.14 Aligned_cols=83 Identities=19% Similarity=0.223 Sum_probs=57.9
Q ss_pred CchhHhHHHHHHHHhCC---chhHHHHHHHHHh-cCCC-chHHHHHHHHHHHHccCHHHHHHHHHHHhccCCCCHHHHHH
Q 009278 422 DPRTYSNRAACYTKLGA---MPEGLKDADKCIE-LDPT-FSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDG 496 (538)
Q Consensus 422 ~~~~~~~la~~~~~~~~---~~~A~~~~~~al~-~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 496 (538)
.....+++++++....+ ..+.+.+++..++ -.|. .-+..+.++.-+++.|+|+.++.+.+..++..|+|.++...
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L 110 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL 110 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 34566777777776554 4567778888776 3443 34466778888888888888888888888888888887655
Q ss_pred HHHHHHHh
Q 009278 497 VRRCVQQI 504 (538)
Q Consensus 497 l~~~~~~~ 504 (538)
-..+..++
T Consensus 111 k~~ied~i 118 (149)
T KOG3364|consen 111 KETIEDKI 118 (149)
T ss_pred HHHHHHHH
Confidence 54444443
No 316
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=96.29 E-value=0.1 Score=38.24 Aligned_cols=91 Identities=16% Similarity=0.197 Sum_probs=66.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCC------------CchhHhHHHHHHHHhCCchhHHHHHHHHHh-------cCCCc
Q 009278 396 GNEFFKQQKYPEAIQHYTESLRRNPK------------DPRTYSNRAACYTKLGAMPEGLKDADKCIE-------LDPTF 456 (538)
Q Consensus 396 a~~~~~~~~~~~A~~~~~~al~~~~~------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~-------~~p~~ 456 (538)
|.-.+..|-|++|...++++.+.... +...+-.|+..+..+|+|++++..-++++. ++.+.
T Consensus 16 ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qde 95 (144)
T PF12968_consen 16 AERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDE 95 (144)
T ss_dssp HHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccccccc
Confidence 34456678899999999999875322 124566788889999999988877777774 34554
Q ss_pred hH----HHHHHHHHHHHccCHHHHHHHHHHHhcc
Q 009278 457 SK----GYTRKGAIQFFLKEYDKALETYQEGLKH 486 (538)
Q Consensus 457 ~~----~~~~l~~~~~~~g~~~~A~~~~~~al~~ 486 (538)
.. +.++.|..+...|+.++|+..|+.+-++
T Consensus 96 GklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 96 GKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 44 4467888999999999999999998764
No 317
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=96.28 E-value=0.12 Score=49.35 Aligned_cols=124 Identities=15% Similarity=0.013 Sum_probs=98.7
Q ss_pred cCCCchHHHHH--HHHHHHhcCChHHHHHHHHHHHhcCCCCchhHhHHHHHHHHhCCchhHHHHHHH-HHhcCCCchHHH
Q 009278 384 FDPKIADEERE--KGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADK-CIELDPTFSKGY 460 (538)
Q Consensus 384 ~~~~~~~~~~~--la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~-al~~~p~~~~~~ 460 (538)
+++.++..+.. +...+...++...+.-.+..++..+|.+..+..+++......|....+...+.. +....|.+..+.
T Consensus 60 ~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~ 139 (620)
T COG3914 60 INDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFL 139 (620)
T ss_pred cCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHH
Confidence 56666666443 477777888888889999999999999999999999998888877666666555 788888887766
Q ss_pred HHH------HHHHHHccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhh
Q 009278 461 TRK------GAIQFFLKEYDKALETYQEGLKHDPQNQELLDGVRRCVQQINKA 507 (538)
Q Consensus 461 ~~l------~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 507 (538)
..+ +.....+|+..++.....++..+.|.++.+...+.....+.-.+
T Consensus 140 ~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~r~~~cs~ 192 (620)
T COG3914 140 GHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTARQEQCSW 192 (620)
T ss_pred hhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHHHHHhccc
Confidence 555 88888899999999999999999999988888777775444433
No 318
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=96.21 E-value=0.0096 Score=49.11 Aligned_cols=61 Identities=23% Similarity=0.279 Sum_probs=57.5
Q ss_pred HHHhhcCCHHHHHHHHHHHhccCCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCch
Q 009278 10 NAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWS 70 (538)
Q Consensus 10 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 70 (538)
......++.+.|.+.|.+++...|.....|+.+|....+.|+++.|...|++.++++|.+.
T Consensus 3 ~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred chhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 4567889999999999999999999999999999999999999999999999999999764
No 319
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=96.16 E-value=0.066 Score=45.40 Aligned_cols=89 Identities=20% Similarity=0.198 Sum_probs=62.8
Q ss_pred hcCChHHHHHHHHHHHhc----CCC---CchhHhHHHHHHHHhCCchh-------HHHHHHHHHhcC--CC----chHHH
Q 009278 401 KQQKYPEAIQHYTESLRR----NPK---DPRTYSNRAACYTKLGAMPE-------GLKDADKCIELD--PT----FSKGY 460 (538)
Q Consensus 401 ~~~~~~~A~~~~~~al~~----~~~---~~~~~~~la~~~~~~~~~~~-------A~~~~~~al~~~--p~----~~~~~ 460 (538)
....+++|+..|.-|+-. ... -+.++..+|++|..+|+.+. |...|.++++.. |. .....
T Consensus 89 ~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~ 168 (214)
T PF09986_consen 89 GERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLL 168 (214)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHH
Confidence 345677888877776632 111 14577889999999998544 555555555442 22 24578
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHhccCCC
Q 009278 461 TRKGAIQFFLKEYDKALETYQEGLKHDPQ 489 (538)
Q Consensus 461 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 489 (538)
+.+|.+..+.|++++|..+|.+++...-.
T Consensus 169 YLigeL~rrlg~~~eA~~~fs~vi~~~~~ 197 (214)
T PF09986_consen 169 YLIGELNRRLGNYDEAKRWFSRVIGSKKA 197 (214)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence 88999999999999999999999986543
No 320
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.15 E-value=0.1 Score=40.35 Aligned_cols=80 Identities=6% Similarity=-0.171 Sum_probs=64.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCchHHHHHHHHHHHHccCHH
Q 009278 395 KGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYD 474 (538)
Q Consensus 395 la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 474 (538)
....-...++.+++...+...--+.|+.+.+-..-|+++...|+|.+|+..++...+-.+..+..--.++.|+..+||..
T Consensus 16 ~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~ 95 (153)
T TIGR02561 16 VLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDAE 95 (153)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChH
Confidence 33444457888888888888888888888888888888888888888888888888877777777778888888888753
No 321
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=95.99 E-value=0.16 Score=48.56 Aligned_cols=131 Identities=15% Similarity=0.043 Sum_probs=101.6
Q ss_pred cCChHHHHHHHHHHHhcCCCCchhHhH--HHHHHHHhCCchhHHHHHHHHHhcCCCchHHHHHHHHHHHHccCHHHHHHH
Q 009278 402 QQKYPEAIQHYTESLRRNPKDPRTYSN--RAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALET 479 (538)
Q Consensus 402 ~~~~~~A~~~~~~al~~~~~~~~~~~~--la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 479 (538)
.+...-++..+...+.++|.++.++.. +...+...+....+.-....++..+|++..+..++|......|....+...
T Consensus 44 ~~~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~ 123 (620)
T COG3914 44 EGLQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALAD 123 (620)
T ss_pred cCchhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHH
Confidence 333444677777777788888877544 477777888888999999999999999999999999999888887777777
Q ss_pred HHH-HhccCCCCHHHHHHHHHHHHHhhhhccCCCChHHHHHHHHhccC-Cchhhhh
Q 009278 480 YQE-GLKHDPQNQELLDGVRRCVQQINKAGRGELSPEELKERQAKGMQ-DPKFRTY 533 (538)
Q Consensus 480 ~~~-al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~p~~~~~ 533 (538)
+.. +....|++.++...+..++. ++++.++...-.++...+.++.. .|.+..+
T Consensus 124 ~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~ 178 (620)
T COG3914 124 ISEIAEWLSPDNAEFLGHLIRFYQ-LGRYLKLLGRTAEAELALERAVDLLPKYPRV 178 (620)
T ss_pred HHHHHHhcCcchHHHHhhHHHHHH-HHHHHHHhccHHHHHHHHHHHHHhhhhhhhh
Confidence 666 88999999999999977777 77777776666666666666655 5555443
No 322
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.96 E-value=0.052 Score=52.01 Aligned_cols=96 Identities=10% Similarity=0.036 Sum_probs=85.0
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHhccCCcc------hHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHH
Q 009278 4 EAKAKGNAAFSSGDYEAAVRHFTEAISLSPDN------HVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLG 77 (538)
Q Consensus 4 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 77 (538)
.+-..|...|+..+|..++++|...+..-|.| +.....++.||+.+.+.+.|.+++++|-+.+|.++-..+..-
T Consensus 356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~ 435 (872)
T KOG4814|consen 356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLML 435 (872)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 34567888999999999999999999877754 456778999999999999999999999999999999988888
Q ss_pred HHHhhccCHHHHHHHHHhhhhc
Q 009278 78 AAHLGLQDYIEAVNSYKKGLDI 99 (538)
Q Consensus 78 ~~~~~~~~~~~A~~~~~~al~~ 99 (538)
.+....|.-++|+.+..+....
T Consensus 436 ~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 436 QSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HHHHHhcchHHHHHHHHHHHhh
Confidence 9999999999999998877654
No 323
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=95.93 E-value=0.28 Score=37.10 Aligned_cols=80 Identities=15% Similarity=0.174 Sum_probs=63.3
Q ss_pred CchHHHHHHHHHHHhcCC---hHHHHHHHHHHHh-cCCC-CchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCchHHHH
Q 009278 387 KIADEEREKGNEFFKQQK---YPEAIQHYTESLR-RNPK-DPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYT 461 (538)
Q Consensus 387 ~~~~~~~~la~~~~~~~~---~~~A~~~~~~al~-~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 461 (538)
-.....+++++++....+ ..+.+.+++..++ -.|. .-+..+.++..+.+.|+|+.++.+.+..++..|++..+.-
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~ 109 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALE 109 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 345667888888887655 6678899999986 4443 3467888999999999999999999999999999988765
Q ss_pred HHHHH
Q 009278 462 RKGAI 466 (538)
Q Consensus 462 ~l~~~ 466 (538)
..-.+
T Consensus 110 Lk~~i 114 (149)
T KOG3364|consen 110 LKETI 114 (149)
T ss_pred HHHHH
Confidence 44333
No 324
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.92 E-value=0.11 Score=42.58 Aligned_cols=98 Identities=15% Similarity=0.105 Sum_probs=77.4
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHHHhccCCc---chHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC--ch----HHH
Q 009278 3 DEAKAKGNAAFSSGDYEAAVRHFTEAISLSPD---NHVLYSNRSAAHASLHNYADALADAKKTVELKPD--WS----KGY 73 (538)
Q Consensus 3 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~----~~~ 73 (538)
.++..+|..|.+.|++++|++.|.++...... -.+.++.+..+.+..+++..+..+..++-..-.. +. ..-
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 57889999999999999999999998876543 2477888889999999999999999988665322 21 234
Q ss_pred HHHHHHHhhccCHHHHHHHHHhhhhcC
Q 009278 74 SRLGAAHLGLQDYIEAVNSYKKGLDID 100 (538)
Q Consensus 74 ~~la~~~~~~~~~~~A~~~~~~al~~~ 100 (538)
..-|..++..++|.+|...|-.+..-.
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 456777788899999999998776443
No 325
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=95.83 E-value=0.022 Score=49.32 Aligned_cols=79 Identities=10% Similarity=0.017 Sum_probs=45.2
Q ss_pred HcCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHhH-HHHHHHHhCCchhHHHHHHHHHhcCCCchHHHH
Q 009278 383 IFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSN-RAACYTKLGAMPEGLKDADKCIELDPTFSKGYT 461 (538)
Q Consensus 383 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~-la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 461 (538)
...|+++..|...+......|-|.+--..|..+++.+|.+.+.|.. -+.-+...++++.+...|.+++.++|++|..|.
T Consensus 101 nkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~ 180 (435)
T COG5191 101 NKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWI 180 (435)
T ss_pred hcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHH
Confidence 3345555666555555555555655556666666666666665554 333355555666666666666666666655554
No 326
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=95.79 E-value=0.077 Score=35.72 Aligned_cols=62 Identities=19% Similarity=0.270 Sum_probs=45.8
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHHHhccCCcchHHHH---HHHHHHHhcCCHHHHHHHHHHHhc
Q 009278 3 DEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYS---NRSAAHASLHNYADALADAKKTVE 64 (538)
Q Consensus 3 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~---~la~~~~~~g~~~~A~~~~~~al~ 64 (538)
...++.|..++.+.+.++|+..++++++..++.+.-+. .+..+|...|+|.+.+.+..+=+.
T Consensus 7 k~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~ 71 (80)
T PF10579_consen 7 KQQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLE 71 (80)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888888889999999999999888777664444 445567778888888777654443
No 327
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=95.79 E-value=0.068 Score=49.41 Aligned_cols=123 Identities=15% Similarity=0.054 Sum_probs=90.2
Q ss_pred hhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHhHHHHHHHHhCCchhHHHHHH
Q 009278 368 LNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDAD 447 (538)
Q Consensus 368 ~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 447 (538)
.|++..|-..+..++...|..|......+.+....|+|+.|...+..+-..-.....+...+-+....+|++++|.....
T Consensus 302 ~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~ 381 (831)
T PRK15180 302 DGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAE 381 (831)
T ss_pred ccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHH
Confidence 35556666666667777888888888888888888888888887766555444444555566667778888888888888
Q ss_pred HHHhcCCCchHHHHHHHHHHHHccCHHHHHHHHHHHhccCCCC
Q 009278 448 KCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQN 490 (538)
Q Consensus 448 ~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 490 (538)
-.+...-+++++..--+-....+|-++++..++++.+.++|..
T Consensus 382 ~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~ 424 (831)
T PRK15180 382 MMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPET 424 (831)
T ss_pred HHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChh
Confidence 7777666666666655666667788888888888888887643
No 328
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=95.78 E-value=1.2 Score=38.71 Aligned_cols=103 Identities=17% Similarity=0.097 Sum_probs=72.6
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhh------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcccc--chhhHHHH
Q 009278 253 EKEAGNAAYKKKEFEKAIEHYSSALEL------DDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRE--LRSDFKMI 324 (538)
Q Consensus 253 ~~~~~~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~ 324 (538)
-..+...+++.|.|.+|+......+.. .|.-..++..-..+|....+..++...+..+-..... +|+. ..
T Consensus 128 e~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpq--lq 205 (421)
T COG5159 128 ECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQ--LQ 205 (421)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHH--HH
Confidence 345678899999999999988777643 2445677788888999999988888877766543222 2222 22
Q ss_pred HHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCC
Q 009278 325 ARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRN 361 (538)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 361 (538)
+..-..-|..+....+ |..|..+|-++++-...
T Consensus 206 a~lDL~sGIlhcdd~d----yktA~SYF~Ea~Egft~ 238 (421)
T COG5159 206 AQLDLLSGILHCDDRD----YKTASSYFIEALEGFTL 238 (421)
T ss_pred HHHHHhccceeecccc----chhHHHHHHHHHhcccc
Confidence 4555556666666666 99999999999885544
No 329
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=95.77 E-value=0.021 Score=49.44 Aligned_cols=90 Identities=8% Similarity=0.028 Sum_probs=77.1
Q ss_pred HHHHhccCCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHH-HHHHHhhccCHHHHHHHHHhhhhcCCCc
Q 009278 25 FTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSR-LGAAHLGLQDYIEAVNSYKKGLDIDPNN 103 (538)
Q Consensus 25 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~-la~~~~~~~~~~~A~~~~~~al~~~p~~ 103 (538)
|.++-...|+++..|...+.--.+.|-|.+--..|.+++..+|.+++.|.. -+.-+...++++.+...|.+++..+|++
T Consensus 96 ~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~ 175 (435)
T COG5191 96 LYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRS 175 (435)
T ss_pred eehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCC
Confidence 334445578899999999988889999999999999999999999999977 5566777899999999999999999999
Q ss_pred HHHHhhHHHHH
Q 009278 104 EALKSGLADAK 114 (538)
Q Consensus 104 ~~~~~~l~~~~ 114 (538)
+..|.....+.
T Consensus 176 p~iw~eyfr~E 186 (435)
T COG5191 176 PRIWIEYFRME 186 (435)
T ss_pred chHHHHHHHHH
Confidence 99887765543
No 330
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=95.76 E-value=0.053 Score=49.17 Aligned_cols=92 Identities=18% Similarity=0.268 Sum_probs=75.6
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHhccC--------Cc-----c-----hHHHHHHHHHHHhcCCHHHHHHHHHHHhccCC
Q 009278 6 KAKGNAAFSSGDYEAAVRHFTEAISLS--------PD-----N-----HVLYSNRSAAHASLHNYADALADAKKTVELKP 67 (538)
Q Consensus 6 ~~~g~~~~~~g~~~~A~~~~~~al~~~--------p~-----~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 67 (538)
...|...+++|+|..|..-|..+++.. |. + ..+--.+..||+++++.+-|+....+.+.++|
T Consensus 180 L~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP 259 (569)
T PF15015_consen 180 LKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNP 259 (569)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCc
Confidence 456677788888888888888877652 11 1 13456789999999999999999999999999
Q ss_pred CchHHHHHHHHHHhhccCHHHHHHHHHhhh
Q 009278 68 DWSKGYSRLGAAHLGLQDYIEAVNSYKKGL 97 (538)
Q Consensus 68 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al 97 (538)
.++.-++..|.|+..+.+|.+|...+--+.
T Consensus 260 ~~frnHLrqAavfR~LeRy~eAarSamia~ 289 (569)
T PF15015_consen 260 SYFRNHLRQAAVFRRLERYSEAARSAMIAD 289 (569)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999988766553
No 331
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=95.72 E-value=0.041 Score=51.40 Aligned_cols=97 Identities=24% Similarity=0.236 Sum_probs=77.5
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCchhHhHHHHHHHHhC---CchhHHHHHHHHHhcCCCchHHHHHHHHHHHHccC
Q 009278 396 GNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLG---AMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKE 472 (538)
Q Consensus 396 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 472 (538)
|.-.+..+....|+..|.+++...|.....+.+.+.++++.+ +--.|+..+..+++++|....+++.|+.++..+++
T Consensus 381 gnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r 460 (758)
T KOG1310|consen 381 GNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTR 460 (758)
T ss_pred ccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhh
Confidence 333344455778889999999999988888888888887754 45567777888889999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCCCHH
Q 009278 473 YDKALETYQEGLKHDPQNQE 492 (538)
Q Consensus 473 ~~~A~~~~~~al~~~p~~~~ 492 (538)
+.+|+.+...+....|.+..
T Consensus 461 ~~eal~~~~alq~~~Ptd~a 480 (758)
T KOG1310|consen 461 YLEALSCHWALQMSFPTDVA 480 (758)
T ss_pred HHHhhhhHHHHhhcCchhhh
Confidence 99999988877777786543
No 332
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.67 E-value=1.3 Score=40.76 Aligned_cols=130 Identities=15% Similarity=0.128 Sum_probs=99.6
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHhcCC--hHHHHHHHHHHHhcCCCCchhHhHHHHHHHHhCC----chhHHHHHH
Q 009278 374 AKKELEQQEIFDPKIADEEREKGNEFFKQQK--YPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGA----MPEGLKDAD 447 (538)
Q Consensus 374 a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~--~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~----~~~A~~~~~ 447 (538)
-+.....++..+|+...+|+....++.+.+. +..-+.+.+++++.+|.+..+|...-.+...... ..+=+.+..
T Consensus 94 eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt 173 (421)
T KOG0529|consen 94 ELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTT 173 (421)
T ss_pred HHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHH
Confidence 3334444445999999999999999987664 6888899999999999999888776666544333 466788899
Q ss_pred HHHhcCCCchHHHHHHHHHHHH------ccC------HHHHHHHHHHHhccCCCCHHHHHHHHHHHHH
Q 009278 448 KCIELDPTFSKGYTRKGAIQFF------LKE------YDKALETYQEGLKHDPQNQELLDGVRRCVQQ 503 (538)
Q Consensus 448 ~al~~~p~~~~~~~~l~~~~~~------~g~------~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 503 (538)
+++..++.|..+|.....++.. .|+ ...-++.-..|+-.+|+|+.+|....+.+..
T Consensus 174 ~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY~rWLl~~ 241 (421)
T KOG0529|consen 174 KLINDNFSNYSAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFYHRWLLGR 241 (421)
T ss_pred HHHhccchhhhHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccceeeehHHhhcc
Confidence 9999999999999988877763 231 3345666777888899999999886666555
No 333
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=95.61 E-value=1.6 Score=39.01 Aligned_cols=190 Identities=14% Similarity=0.082 Sum_probs=111.6
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhh----C--CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHHH
Q 009278 253 EKEAGNAAYKKKEFEKAIEHYSSALEL----D--DEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIAR 326 (538)
Q Consensus 253 ~~~~~~~~~~~~~~~~A~~~~~~al~~----~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 326 (538)
-..+...|+..++|.+|+......+.. + +.-.+++..-..+|....+..+|...+..+-......--.....+.
T Consensus 131 earli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~ 210 (411)
T KOG1463|consen 131 EARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQAT 210 (411)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHH
Confidence 345678899999999999888777643 2 2235667777888999999999998888776543221111122255
Q ss_pred HHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcCChH
Q 009278 327 ALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYP 406 (538)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 406 (538)
.-..-|..+....+ |..|..+|-++++-....+ ...+|... --|..+..+....-+--
T Consensus 211 lDLqSGIlha~ekD----ykTafSYFyEAfEgf~s~~------~~v~A~~s------------LKYMlLcKIMln~~ddv 268 (411)
T KOG1463|consen 211 LDLQSGILHAAEKD----YKTAFSYFYEAFEGFDSLD------DDVKALTS------------LKYMLLCKIMLNLPDDV 268 (411)
T ss_pred HHHhccceeecccc----cchHHHHHHHHHccccccC------CcHHHHHH------------HHHHHHHHHHhcCHHHH
Confidence 55666777766666 9999999999988543311 00111111 11222333333222222
Q ss_pred HHHHHHHHHHhcCCCCchhHhHHHHHHHH--hCCchhHHHHHHHHHhcCCCchHHHHHHHHHH
Q 009278 407 EAIQHYTESLRRNPKDPRTYSNRAACYTK--LGAMPEGLKDADKCIELDPTFSKGYTRKGAIQ 467 (538)
Q Consensus 407 ~A~~~~~~al~~~~~~~~~~~~la~~~~~--~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 467 (538)
.++-.-+.+++....+..++...+..+.. +.+|+.|+.-|..-+..+| .+...+..+|
T Consensus 269 ~~lls~K~~l~y~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~~D~---ivr~Hl~~Ly 328 (411)
T KOG1463|consen 269 AALLSAKLALKYAGRDIDAMKAVAEAFGNRSLKDFEKALADYKKELAEDP---IVRSHLQSLY 328 (411)
T ss_pred HHHHhhHHHHhccCcchHHHHHHHHHhcCCcHHHHHHHHHHhHHHHhcCh---HHHHHHHHHH
Confidence 23333344555555566777777766643 4567777777777666544 3334444444
No 334
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.51 E-value=0.97 Score=36.02 Aligned_cols=59 Identities=8% Similarity=0.098 Sum_probs=34.2
Q ss_pred HHHHHHhcccHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc
Q 009278 256 AGNAAYKKKEFEKAIEHYSSALELDDED--ISYLTNRAAVYLEMGKYEECIKDCDKAVERG 314 (538)
Q Consensus 256 ~~~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 314 (538)
.+.-+...+..++|+..|..+-+-.-.+ .-+....+.+..+.|+...|+..|..+-...
T Consensus 64 aAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt 124 (221)
T COG4649 64 AALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADT 124 (221)
T ss_pred HHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccC
Confidence 3444555666666666666655443332 2344555666666677777777776665543
No 335
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.51 E-value=0.98 Score=36.01 Aligned_cols=147 Identities=12% Similarity=0.071 Sum_probs=97.3
Q ss_pred hhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchH--HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 009278 345 YEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIAD--EEREKGNEFFKQQKYPEAIQHYTESLRRNPKD 422 (538)
Q Consensus 345 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~ 422 (538)
-..+-..|..+++. ...+..++|+..|....+..-.... +.+..|.+....|+-..|+..|..+-...| .
T Consensus 55 as~sgd~flaAL~l-------A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~-~ 126 (221)
T COG4649 55 ASKSGDAFLAALKL-------AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTS-I 126 (221)
T ss_pred cccchHHHHHHHHH-------HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCC-C
Confidence 44444445555542 2234455666666665555544433 456678899999999999999998766544 3
Q ss_pred ch-----hHhHHHHHHHHhCCchhHHHHHHHHH-hcCCCchHHHHHHHHHHHHccCHHHHHHHHHHHhccCCCCHHHHHH
Q 009278 423 PR-----TYSNRAACYTKLGAMPEGLKDADKCI-ELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDG 496 (538)
Q Consensus 423 ~~-----~~~~la~~~~~~~~~~~A~~~~~~al-~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 496 (538)
|. +...-+.++...|.|+.-....+..- ..+|-...+.-.||..-++.|++.+|...|.+... +...|....+
T Consensus 127 P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirq 205 (221)
T COG4649 127 PQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQ 205 (221)
T ss_pred cchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHH
Confidence 33 34555667888899988776665433 23555666778899999999999999999999887 3333443334
Q ss_pred HHHH
Q 009278 497 VRRC 500 (538)
Q Consensus 497 l~~~ 500 (538)
.+.+
T Consensus 206 RAq~ 209 (221)
T COG4649 206 RAQI 209 (221)
T ss_pred HHHH
Confidence 4443
No 336
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=95.43 E-value=0.28 Score=45.60 Aligned_cols=126 Identities=15% Similarity=0.182 Sum_probs=84.6
Q ss_pred HHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHHHHHHHhHHHHHHhh
Q 009278 260 AYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMA 339 (538)
Q Consensus 260 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (538)
....|+.-.|-..+..++...|.++......+.+...+|+|+.+...+.-+-..-..-......+.+..+.+|
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~------- 371 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLA------- 371 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchh-------
Confidence 3457899999999999999999999999999999999999999988876554432222222222223333333
Q ss_pred hcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 009278 340 KCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRN 419 (538)
Q Consensus 340 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 419 (538)
+ +++|.....-.+. ..-.++++....+......|-++++...+++.+.++
T Consensus 372 r----~~~a~s~a~~~l~--------------------------~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 372 R----WREALSTAEMMLS--------------------------NEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred h----HHHHHHHHHHHhc--------------------------cccCChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 3 7777766666555 333444544444555556667777777777777777
Q ss_pred CCC
Q 009278 420 PKD 422 (538)
Q Consensus 420 ~~~ 422 (538)
|..
T Consensus 422 ~~~ 424 (831)
T PRK15180 422 PET 424 (831)
T ss_pred Chh
Confidence 653
No 337
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=95.32 E-value=4.6 Score=42.61 Aligned_cols=90 Identities=21% Similarity=0.161 Sum_probs=60.2
Q ss_pred cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHHHHHHHhHHHHHHhhhcccC
Q 009278 265 EFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKD 344 (538)
Q Consensus 265 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (538)
.+++|+..|++. .-.|.-+--+...|.+|.++|++++-++++.-+++..|.++......-.+.+++-.+....
T Consensus 534 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 606 (932)
T PRK13184 534 DFTQALSEFSYL-HGGVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKH------ 606 (932)
T ss_pred HHHHHHHHHHHh-cCCCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHH------
Confidence 577788888774 3355666778888889999999999999999999988888766555444555544443332
Q ss_pred hhHHHHHHHHHHhcCCC
Q 009278 345 YEPAIETFQKALTEHRN 361 (538)
Q Consensus 345 ~~~A~~~~~~~~~~~~~ 361 (538)
...|....--++...|.
T Consensus 607 ~~~~~~~~~~~~~~~~~ 623 (932)
T PRK13184 607 RREALVFMLLALWIAPE 623 (932)
T ss_pred HHHHHHHHHHHHHhCcc
Confidence 33444444455554444
No 338
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=94.97 E-value=3.2 Score=38.77 Aligned_cols=232 Identities=9% Similarity=-0.014 Sum_probs=120.2
Q ss_pred HHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHH
Q 009278 244 KERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKM 323 (538)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 323 (538)
..-+-.+..|+.....+...++-+.|+....+++...|. ....++.+|...++-+.-..+|+++++.-.
T Consensus 296 ~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps---L~~~lse~yel~nd~e~v~~~fdk~~q~L~-------- 364 (660)
T COG5107 296 DYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS---LTMFLSEYYELVNDEEAVYGCFDKCTQDLK-------- 364 (660)
T ss_pred HHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc---hheeHHHHHhhcccHHHHhhhHHHHHHHHH--------
Confidence 334556777888888888888888888888888777665 666778888777777777777777664210
Q ss_pred HHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCC-----hhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHH
Q 009278 324 IARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRN-----PDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNE 398 (538)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~ 398 (538)
.- +..+..-...+. .++++..-+.+-+-.....- -........++.|...|.++.+..-....++..-|.+
T Consensus 365 --r~-ys~~~s~~~s~~-D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~ 440 (660)
T COG5107 365 --RK-YSMGESESASKV-DNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFI 440 (660)
T ss_pred --HH-Hhhhhhhhhccc-cCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHH
Confidence 00 000000000000 00011111111000000000 0011122333444445544444332333333333322
Q ss_pred -HHhcCChHHHHHHHHHHHhcCCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCc--hHHHHHHHHHHHHccCHHH
Q 009278 399 -FFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTF--SKGYTRKGAIQFFLKEYDK 475 (538)
Q Consensus 399 -~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~g~~~~ 475 (538)
+...|++.-|-.+|+-.+...|+++......-..+...++-..|...|++++..-... ...|-.+-..-..-|+...
T Consensus 441 E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~ 520 (660)
T COG5107 441 EYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNN 520 (660)
T ss_pred HHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHH
Confidence 3456677777777777777777666555555555666677777777777666542222 3344444444455566666
Q ss_pred HHHHHHHHhccCCCC
Q 009278 476 ALETYQEGLKHDPQN 490 (538)
Q Consensus 476 A~~~~~~al~~~p~~ 490 (538)
+...=++...+.|..
T Consensus 521 v~sLe~rf~e~~pQe 535 (660)
T COG5107 521 VYSLEERFRELVPQE 535 (660)
T ss_pred HHhHHHHHHHHcCcH
Confidence 666666666666653
No 339
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.96 E-value=2.1 Score=36.82 Aligned_cols=102 Identities=11% Similarity=0.163 Sum_probs=69.7
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHhhCCCC------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHH
Q 009278 255 EAGNAAYKKKEFEKAIEHYSSALELDDED------------ISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFK 322 (538)
Q Consensus 255 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 322 (538)
.+|.+++..++|.+-.+.+++.-..+... .+++-.-..+|-.+.+..+-...|++++.+....+...
T Consensus 150 KLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPl- 228 (440)
T KOG1464|consen 150 KLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPL- 228 (440)
T ss_pred hHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchH-
Confidence 46888888888888887777765543221 24444555677788888888888999988655443322
Q ss_pred HHHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCC
Q 009278 323 MIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRN 361 (538)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 361 (538)
.++.+.-.-|..+...|+ +++|-..|-.+.+....
T Consensus 229 ImGvIRECGGKMHlreg~----fe~AhTDFFEAFKNYDE 263 (440)
T KOG1464|consen 229 IMGVIRECGGKMHLREGE----FEKAHTDFFEAFKNYDE 263 (440)
T ss_pred HHhHHHHcCCccccccch----HHHHHhHHHHHHhcccc
Confidence 224555555667777777 99999888888875543
No 340
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=94.78 E-value=1.6 Score=42.57 Aligned_cols=212 Identities=14% Similarity=0.066 Sum_probs=104.0
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhhC-------------CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchh
Q 009278 253 EKEAGNAAYKKKEFEKAIEHYSSALELD-------------DEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRS 319 (538)
Q Consensus 253 ~~~~~~~~~~~~~~~~A~~~~~~al~~~-------------p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 319 (538)
|..++......=+++-|.+.|.++-... .....--..+|.++.-.|++.+|...|.+.=..+.
T Consensus 588 W~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iLlA~~~Ay~gKF~EAAklFk~~G~enR---- 663 (1081)
T KOG1538|consen 588 WRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPNDLLLADVFAYQGKFHEAAKLFKRSGHENR---- 663 (1081)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhhhHHHHHHHHHHcCchhh----
Confidence 5556666666667777777776654220 01111224577888888999999888876422111
Q ss_pred hHHHHH-HHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcC-----CC--hhHHHhhhhHHHHHHHH----------HHH
Q 009278 320 DFKMIA-RALTRKGTALVKMAKCSKDYEPAIETFQKALTEH-----RN--PDTLKKLNEAEKAKKEL----------EQQ 381 (538)
Q Consensus 320 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----~~--~~~~~~~~~~~~a~~~~----------~~~ 381 (538)
...... .-.+..+.-+...+. .++-....++-.... |. ++.+...|+..+|+... +-.
T Consensus 664 AlEmyTDlRMFD~aQE~~~~g~----~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~ 739 (1081)
T KOG1538|consen 664 ALEMYTDLRMFDYAQEFLGSGD----PKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIA 739 (1081)
T ss_pred HHHHHHHHHHHHHHHHHhhcCC----hHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHH
Confidence 000000 011222222222222 333222222222211 11 23444555555554432 112
Q ss_pred HHcCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCchHHHH
Q 009278 382 EIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYT 461 (538)
Q Consensus 382 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 461 (538)
.+++....+.+...+..+.....+.-|.++|.+.=.. -.+...+...++|++|....++.-+.- +++|+
T Consensus 740 rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~--------ksiVqlHve~~~W~eAFalAe~hPe~~---~dVy~ 808 (1081)
T KOG1538|consen 740 RKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL--------KSLVQLHVETQRWDEAFALAEKHPEFK---DDVYM 808 (1081)
T ss_pred hhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH--------HHHhhheeecccchHhHhhhhhCcccc---ccccc
Confidence 2233344444555555555555566666666543211 224445566778888877766543332 33555
Q ss_pred HHHHHHHHccCHHHHHHHHHHH
Q 009278 462 RKGAIQFFLKEYDKALETYQEG 483 (538)
Q Consensus 462 ~l~~~~~~~g~~~~A~~~~~~a 483 (538)
-.|+.+....++++|.+.|.+|
T Consensus 809 pyaqwLAE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 809 PYAQWLAENDRFEEAQKAFHKA 830 (1081)
T ss_pred hHHHHhhhhhhHHHHHHHHHHh
Confidence 5666666666666666655554
No 341
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=94.75 E-value=0.049 Score=32.01 Aligned_cols=27 Identities=22% Similarity=0.251 Sum_probs=13.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 009278 38 LYSNRSAAHASLHNYADALADAKKTVE 64 (538)
Q Consensus 38 ~~~~la~~~~~~g~~~~A~~~~~~al~ 64 (538)
++.++|.+|...|++++|+.++++++.
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 344455555555555555555555443
No 342
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=94.70 E-value=0.46 Score=43.48 Aligned_cols=108 Identities=16% Similarity=0.248 Sum_probs=78.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCC--------CCc----------hhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCch
Q 009278 396 GNEFFKQQKYPEAIQHYTESLRRNP--------KDP----------RTYSNRAACYTKLGAMPEGLKDADKCIELDPTFS 457 (538)
Q Consensus 396 a~~~~~~~~~~~A~~~~~~al~~~~--------~~~----------~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 457 (538)
|..++++++|..|..-|..++++.. ..+ .+--.+..||.++++.+-|+....+.|.++|.+.
T Consensus 183 as~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~f 262 (569)
T PF15015_consen 183 ASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYF 262 (569)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchh
Confidence 4556677777777777777766522 111 2334688999999999999999999999999999
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHhc---cCCCCHHHHHHHHHHHHH
Q 009278 458 KGYTRKGAIQFFLKEYDKALETYQEGLK---HDPQNQELLDGVRRCVQQ 503 (538)
Q Consensus 458 ~~~~~l~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~ 503 (538)
.-+...|.++..+.+|.+|...+--+.- +...+..-...+...|.+
T Consensus 263 rnHLrqAavfR~LeRy~eAarSamia~ymywl~g~~~q~~S~lIklyWq 311 (569)
T PF15015_consen 263 RNHLRQAAVFRRLERYSEAARSAMIADYMYWLSGGSEQRISKLIKLYWQ 311 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHhHHHHHHHHHH
Confidence 9999999999999999999887766543 344444444445555443
No 343
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=94.62 E-value=0.054 Score=30.85 Aligned_cols=30 Identities=20% Similarity=0.464 Sum_probs=17.6
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHHHhcc
Q 009278 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAISL 31 (538)
Q Consensus 2 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~ 31 (538)
|+.+..+|.+-+..++|++|+.-|++++++
T Consensus 1 Adv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 1 ADVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred CcHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 345555666666666666666666665543
No 344
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=94.61 E-value=0.068 Score=31.38 Aligned_cols=29 Identities=21% Similarity=0.213 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHhcc
Q 009278 458 KGYTRKGAIQFFLKEYDKALETYQEGLKH 486 (538)
Q Consensus 458 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 486 (538)
.++.++|.+|..+|++++|..++++++.+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 45677888888888888888888888764
No 345
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=94.52 E-value=0.49 Score=49.96 Aligned_cols=98 Identities=17% Similarity=0.307 Sum_probs=73.6
Q ss_pred hhHHHHHHHHHhhcCCHHHHHH------HHH-HHhccCCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhccC--------
Q 009278 2 ADEAKAKGNAAFSSGDYEAAVR------HFT-EAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELK-------- 66 (538)
Q Consensus 2 a~~~~~~g~~~~~~g~~~~A~~------~~~-~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------- 66 (538)
+....+.|......|.+.+|.+ .+. ......|.....+..++..+..+|++++|+....++.-+.
T Consensus 932 a~~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds 1011 (1236)
T KOG1839|consen 932 AKDSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDS 1011 (1236)
T ss_pred hhhhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCC
Confidence 3456778888888889988877 555 2333577788999999999999999999999988876543
Q ss_pred CCchHHHHHHHHHHhhccCHHHHHHHHHhhhhc
Q 009278 67 PDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDI 99 (538)
Q Consensus 67 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 99 (538)
|+....+..++...+..++...|+..+.++..+
T Consensus 1012 ~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l 1044 (1236)
T KOG1839|consen 1012 PNTKLAYGNLALYEFAVKNLSGALKSLNRALKL 1044 (1236)
T ss_pred HHHHHHhhHHHHHHHhccCccchhhhHHHHHHh
Confidence 455667777777777777777777777766543
No 346
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=94.50 E-value=0.073 Score=47.33 Aligned_cols=115 Identities=21% Similarity=0.284 Sum_probs=96.0
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHhccCC-----------c--------chHHHHHHHHHHHhcCCHHHHHHHHHHHhcc
Q 009278 5 AKAKGNAAFSSGDYEAAVRHFTEAISLSP-----------D--------NHVLYSNRSAAHASLHNYADALADAKKTVEL 65 (538)
Q Consensus 5 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p-----------~--------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 65 (538)
....|...+..++|..|..-|.+++..-. + -.....+++.+-+..+.+..|+.....++..
T Consensus 225 ~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~ 304 (372)
T KOG0546|consen 225 KKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALRD 304 (372)
T ss_pred hhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceecccccccc
Confidence 34567788999999999999998875311 1 1245667889999999999999999999999
Q ss_pred CCCchHHHHHHHHHHhhccCHHHHHHHHHhhhhcCCCcHHHHhhHHHHHHHHhh
Q 009278 66 KPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASA 119 (538)
Q Consensus 66 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 119 (538)
++....+++.++..+....++++|+..++.+....|++......+.........
T Consensus 305 ~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~~ 358 (372)
T KOG0546|consen 305 ERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKKKQ 358 (372)
T ss_pred ChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHHHH
Confidence 999999999999999999999999999999999999999887777666555543
No 347
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.36 E-value=5.7 Score=38.97 Aligned_cols=104 Identities=17% Similarity=0.204 Sum_probs=76.2
Q ss_pred HHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcCC
Q 009278 325 ARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQK 404 (538)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 404 (538)
-.++.+.+.-.++..+ |..+++.|...+...+... .+.........++.+|....+
T Consensus 354 H~iLWn~A~~~F~~~~----Y~~s~~~y~~Sl~~i~~D~--------------------~~~~FaK~qR~l~~CYL~L~Q 409 (872)
T KOG4814|consen 354 HTLLWNTAKKLFKMEK----YVVSIRFYKLSLKDIISDN--------------------YSDRFAKIQRALQVCYLKLEQ 409 (872)
T ss_pred HHHHHHhhHHHHHHHH----HHHHHHHHHHHHHhccchh--------------------hhhHHHHHHHHHHHHHhhHHH
Confidence 4555666666777777 9999999988888655543 333445566777888888888
Q ss_pred hHHHHHHHHHHHhcCCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhc
Q 009278 405 YPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIEL 452 (538)
Q Consensus 405 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 452 (538)
.+.|.++++.|-+.+|.++-.-..+-.+....|.-++|+.+.......
T Consensus 410 LD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 410 LDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcchHHHHHHHHHHHhh
Confidence 888888888888888877777777777777778888888777666544
No 348
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=94.23 E-value=0.32 Score=42.09 Aligned_cols=71 Identities=21% Similarity=0.165 Sum_probs=55.0
Q ss_pred hHhHHHHHHHHhCCchhHHHHHHHHHhcCCCchHHHHHHHHHHHHccCHHHHHHHHHHHhccCCCCHHHHH
Q 009278 425 TYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLD 495 (538)
Q Consensus 425 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 495 (538)
...++=..+...++++.|..+.++.+.++|+++.-+...|.+|.++|.+.-|+..++..++..|+++.+-.
T Consensus 183 ll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ 253 (269)
T COG2912 183 LLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEM 253 (269)
T ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHH
Confidence 34445556777788888888888888888888888888888888888888888888888888888776543
No 349
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.19 E-value=5.8 Score=38.41 Aligned_cols=50 Identities=14% Similarity=0.187 Sum_probs=39.6
Q ss_pred cccHHHHHHHHHHHHhh------------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 009278 263 KKEFEKAIEHYSSALEL------------DDEDISYLTNRAAVYLEMGKYEECIKDCDKAVE 312 (538)
Q Consensus 263 ~~~~~~A~~~~~~al~~------------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 312 (538)
...|++|...|.-+... .|.+...+..++.+...+|+.+-|.....+++-
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly 312 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLY 312 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 45577777777777654 466678999999999999999988888888763
No 350
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=94.17 E-value=3.8 Score=36.24 Aligned_cols=122 Identities=20% Similarity=0.256 Sum_probs=68.1
Q ss_pred CCCchHHHHHHHHHHHhcCChHHHHHHHHHH----------------HhcCCCCchhHhHHHHH-HHHhCCchhHHHHHH
Q 009278 385 DPKIADEEREKGNEFFKQQKYPEAIQHYTES----------------LRRNPKDPRTYSNRAAC-YTKLGAMPEGLKDAD 447 (538)
Q Consensus 385 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a----------------l~~~~~~~~~~~~la~~-~~~~~~~~~A~~~~~ 447 (538)
.-.++..+..+|..+.+.|++.+|..+|-.. .+-.|.....+...+.+ |...++...|...+.
T Consensus 86 ~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~ 165 (260)
T PF04190_consen 86 KFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIARAVLQYLCLGNLRDANELFD 165 (260)
T ss_dssp TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHTTBHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 3467889999999999999999988877421 12345566666666665 778899999988776
Q ss_pred HHHhc----CCCc---------hHHHHHHHHHH---HHccC---HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhh
Q 009278 448 KCIEL----DPTF---------SKGYTRKGAIQ---FFLKE---YDKALETYQEGLKHDPQNQELLDGVRRCVQQINK 506 (538)
Q Consensus 448 ~al~~----~p~~---------~~~~~~l~~~~---~~~g~---~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 506 (538)
..++. +|+. .....+....+ ...++ +..-.+.|+..++.+|.-...+..+|..+..+..
T Consensus 166 ~f~~~~~~~~p~~~~~~~~~~~~~PllnF~~lLl~t~e~~~~~~F~~L~~~Y~~~L~rd~~~~~~L~~IG~~yFgi~~ 243 (260)
T PF04190_consen 166 TFTSKLIESHPKLENSDIEYPPSYPLLNFLQLLLLTCERDNLPLFKKLCEKYKPSLKRDPSFKEYLDKIGQLYFGIQP 243 (260)
T ss_dssp HHHHHHHHH---EEEEEEEEESS-HHHHHHHHHHHHHHHT-HHHHHHHHHHTHH---HHHHTHHHHHHHHHHHH---S
T ss_pred HHHHHHhccCcchhccccCCCCCCchHHHHHHHHHHHhcCcHHHHHHHHHHhCccccccHHHHHHHHHHHHHHCCCCC
Confidence 66655 4321 11122222222 22232 3333444455555667777788888888877553
No 351
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.16 E-value=3.6 Score=39.59 Aligned_cols=158 Identities=15% Similarity=0.098 Sum_probs=85.6
Q ss_pred HHHhcccHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHHHHHHHhHHHHHH
Q 009278 259 AAYKKKEFEKAIEHYSSALELDDED-ISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVK 337 (538)
Q Consensus 259 ~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (538)
.....++++++....... ++-|.- .......+..+...|-++.|+...+. |+ .. .+....+|+
T Consensus 270 ~av~~~d~~~v~~~i~~~-~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D-----~~---~r---FeLAl~lg~---- 333 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAAS-NLLPNIPKDQGQSIARFLEKKGYPELALQFVTD-----PD---HR---FELALQLGN---- 333 (443)
T ss_dssp HHHHTT-HHH-----HHH-HTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS------HH---HH---HHHHHHCT-----
T ss_pred HHHHcCChhhhhhhhhhh-hhcccCChhHHHHHHHHHHHCCCHHHHHhhcCC-----hH---HH---hHHHHhcCC----
Confidence 344568888877766521 112222 33455666777777877777655321 11 11 222223332
Q ss_pred hhhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009278 338 MAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLR 417 (538)
Q Consensus 338 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 417 (538)
.+.|.+.. ...+++..|..+|...+..|+++-|..+|+++-
T Consensus 334 -------L~~A~~~a-------------------------------~~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~- 374 (443)
T PF04053_consen 334 -------LDIALEIA-------------------------------KELDDPEKWKQLGDEALRQGNIELAEECYQKAK- 374 (443)
T ss_dssp -------HHHHHHHC-------------------------------CCCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-
T ss_pred -------HHHHHHHH-------------------------------HhcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc-
Confidence 55554432 344578899999999999999999999998753
Q ss_pred cCCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCchHHHHHHHHHHHHccCHHHHHHHHHHH
Q 009278 418 RNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEG 483 (538)
Q Consensus 418 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 483 (538)
-+..+..+|...|+.+.-.+..+.+......+. .-.+++..|+.++.++.+.++
T Consensus 375 -------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~~n~-----af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 375 -------DFSGLLLLYSSTGDREKLSKLAKIAEERGDINI-----AFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp --------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-HHH-----HHHHHHHHT-HHHHHHHHHHT
T ss_pred -------CccccHHHHHHhCCHHHHHHHHHHHHHccCHHH-----HHHHHHHcCCHHHHHHHHHHc
Confidence 344567777888887666565555544332211 223445566666666665543
No 352
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=94.15 E-value=3.6 Score=35.87 Aligned_cols=208 Identities=17% Similarity=0.163 Sum_probs=105.8
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHhhCCC--------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHH
Q 009278 254 KEAGNAAYKKKEFEKAIEHYSSALELDDE--------DISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIA 325 (538)
Q Consensus 254 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~--------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 325 (538)
..+++-..+.+++++|+..|.+.+..... ...+...++.+|...|++..-.+........-.+..... ..
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k--~~ 84 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPK--IT 84 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchh--HH
Confidence 55677888899999999999999976321 235678899999999987654443332221111000000 00
Q ss_pred HHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcCCh
Q 009278 326 RALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKY 405 (538)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 405 (538)
.+...+-. ......+.++.-+......++.... +-...+. ...-..+...+++.|.|
T Consensus 85 KiirtLie---kf~~~~dsl~dqi~v~~~~iewA~r-----------Ekr~fLr---------~~Le~Kli~l~y~~~~Y 141 (421)
T COG5159 85 KIIRTLIE---KFPYSSDSLEDQIKVLTALIEWADR-----------EKRKFLR---------LELECKLIYLLYKTGKY 141 (421)
T ss_pred HHHHHHHH---hcCCCCccHHHHHHHHHHHHHHHHH-----------HHHHHHH---------HHHHHHHHHHHHhcccH
Confidence 11111000 0000011133333333333331100 0000000 11223456667777888
Q ss_pred HHHHHHHHHHHhc------CCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhc-----CCCchHHHH--HHHHHHHHccC
Q 009278 406 PEAIQHYTESLRR------NPKDPRTYSNRAACYTKLGAMPEGLKDADKCIEL-----DPTFSKGYT--RKGAIQFFLKE 472 (538)
Q Consensus 406 ~~A~~~~~~al~~------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~--~l~~~~~~~g~ 472 (538)
.+|+......+.. .|.-..++..-..+|....+..++...+..+-.. .|....+.. .-|..+....+
T Consensus 142 sdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~d 221 (421)
T COG5159 142 SDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRD 221 (421)
T ss_pred HHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeecccc
Confidence 8887776665432 2333456666677777777777766666554332 232222221 22444555566
Q ss_pred HHHHHHHHHHHhcc
Q 009278 473 YDKALETYQEGLKH 486 (538)
Q Consensus 473 ~~~A~~~~~~al~~ 486 (538)
|..|..+|-.+++-
T Consensus 222 yktA~SYF~Ea~Eg 235 (421)
T COG5159 222 YKTASSYFIEALEG 235 (421)
T ss_pred chhHHHHHHHHHhc
Confidence 77777777666653
No 353
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=94.04 E-value=1.7 Score=35.99 Aligned_cols=54 Identities=19% Similarity=0.129 Sum_probs=29.9
Q ss_pred CchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCC----chHHHHHHHHHHHHccCHHHH
Q 009278 422 DPRTYSNRAACYTKLGAMPEGLKDADKCIELDPT----FSKGYTRKGAIQFFLKEYDKA 476 (538)
Q Consensus 422 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~l~~~~~~~g~~~~A 476 (538)
+++..+.+|..|. ..+.++|+..+.+++++.+. +++++..|+.++.++|+++.|
T Consensus 140 t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 140 TAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred CHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 4455555555444 44556666666666655322 355666666666666666655
No 354
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=94.04 E-value=0.27 Score=42.55 Aligned_cols=78 Identities=19% Similarity=0.093 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHHHHHhhccCHHHHHHHHHhhhhcCCCcHHHHhhHHHHH
Q 009278 37 VLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNEALKSGLADAK 114 (538)
Q Consensus 37 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 114 (538)
....++=..+...++++.|..+.++.+.++|.++.-+.-.|.+|.++|.+.-|+..+...++..|+++.+-.....+.
T Consensus 182 rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l~ 259 (269)
T COG2912 182 RLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQLL 259 (269)
T ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 344455567788899999999999999999999999999999999999999999999999999999988765554443
No 355
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=93.96 E-value=0.18 Score=28.42 Aligned_cols=32 Identities=16% Similarity=0.009 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHccCHHHHHHH--HHHHhccCCC
Q 009278 458 KGYTRKGAIQFFLKEYDKALET--YQEGLKHDPQ 489 (538)
Q Consensus 458 ~~~~~l~~~~~~~g~~~~A~~~--~~~al~~~p~ 489 (538)
+.++.+|..+..+|++++|+.. |+-+..++|.
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 3455666666666666666666 3355555554
No 356
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=93.90 E-value=0.23 Score=35.78 Aligned_cols=28 Identities=18% Similarity=0.348 Sum_probs=14.3
Q ss_pred HHHHHHHHHhhccCHHHHHHHHHhhhhc
Q 009278 72 GYSRLGAAHLGLQDYIEAVNSYKKGLDI 99 (538)
Q Consensus 72 ~~~~la~~~~~~~~~~~A~~~~~~al~~ 99 (538)
+++.+|.++...|++++|+..+++++.+
T Consensus 43 all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 43 ALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3444555555555555555555555544
No 357
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=93.90 E-value=1.1 Score=30.39 Aligned_cols=65 Identities=23% Similarity=0.295 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHH---HHHHHHHHhCCHHHHHHHHHHHHHc
Q 009278 249 KALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLT---NRAAVYLEMGKYEECIKDCDKAVER 313 (538)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~---~la~~~~~~~~~~~A~~~~~~~~~~ 313 (538)
.+......|.-++...+.++|+..++++++..++.+.-+. .+..+|...|+|.+.+.+...-+.+
T Consensus 5 ~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 5 QAKQQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667788899999999999999999999888765544 4556788899999988876655543
No 358
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=93.63 E-value=0.23 Score=27.95 Aligned_cols=18 Identities=11% Similarity=0.041 Sum_probs=6.5
Q ss_pred HHHHHHHhcCCHHHHHHH
Q 009278 41 NRSAAHASLHNYADALAD 58 (538)
Q Consensus 41 ~la~~~~~~g~~~~A~~~ 58 (538)
.+|..+...|++++|+..
T Consensus 6 ~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 6 GLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHH
Confidence 333333333333333333
No 359
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=93.55 E-value=0.12 Score=26.51 Aligned_cols=23 Identities=9% Similarity=-0.071 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHccCHHHHHHHHH
Q 009278 459 GYTRKGAIQFFLKEYDKALETYQ 481 (538)
Q Consensus 459 ~~~~l~~~~~~~g~~~~A~~~~~ 481 (538)
+.+.+|.++...|++++|...++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45556666666666666665554
No 360
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=93.54 E-value=0.13 Score=29.38 Aligned_cols=29 Identities=31% Similarity=0.591 Sum_probs=22.3
Q ss_pred HHHHHHHHHHhhccCHHHHHHHHHhhhhc
Q 009278 71 KGYSRLGAAHLGLQDYIEAVNSYKKGLDI 99 (538)
Q Consensus 71 ~~~~~la~~~~~~~~~~~A~~~~~~al~~ 99 (538)
.++..+|.+.+..++|++|+..|++++++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 45677888888888888888888887765
No 361
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.40 E-value=3.6 Score=39.74 Aligned_cols=98 Identities=7% Similarity=-0.026 Sum_probs=70.6
Q ss_pred HHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhh---------------------CCCCHH---HHHHHHHHHHHhC
Q 009278 243 AKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALEL---------------------DDEDIS---YLTNRAAVYLEMG 298 (538)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~---------------------~p~~~~---~~~~la~~~~~~~ 298 (538)
+...|-....++.++.+...+|+.+.|....++++=. .|.|-. +++..-..+.+.|
T Consensus 277 L~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RG 356 (665)
T KOG2422|consen 277 LISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRG 356 (665)
T ss_pred eccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 3445778899999999999999999888888887621 122222 2333345566789
Q ss_pred CHHHHHHHHHHHHHcccc-chhhHHHHHHHHHHhHHHHHHhhh
Q 009278 299 KYEECIKDCDKAVERGRE-LRSDFKMIARALTRKGTALVKMAK 340 (538)
Q Consensus 299 ~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 340 (538)
-+..|.++++-++.++|. ++-....+.+.|...+.-|.-.-+
T Consensus 357 C~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~ 399 (665)
T KOG2422|consen 357 CWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIE 399 (665)
T ss_pred ChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHH
Confidence 999999999999999998 766666666666666665544444
No 362
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.39 E-value=1 Score=39.60 Aligned_cols=64 Identities=17% Similarity=0.124 Sum_probs=59.3
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHHHHHhhccCHHHHHHHHHhhhhc
Q 009278 36 HVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDI 99 (538)
Q Consensus 36 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 99 (538)
..++..++..+...|+++.++..+++.+..+|.+-.+|..+-..|...|+...|+..|++.-+.
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 4677888999999999999999999999999999999999999999999999999999987653
No 363
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=93.36 E-value=5.6 Score=35.50 Aligned_cols=56 Identities=14% Similarity=0.090 Sum_probs=36.7
Q ss_pred HHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Q 009278 256 AGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVER 313 (538)
Q Consensus 256 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 313 (538)
+-....+..+..+-++.-..+++++|....++..++.-- .--..+|...++++++.
T Consensus 190 IMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEE--a~Ti~~AE~l~k~ALka 245 (556)
T KOG3807|consen 190 IMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEEE--ATTIVDAERLFKQALKA 245 (556)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhh--hhhHHHHHHHHHHHHHH
Confidence 344455667777777778888888888877777766432 22345666667666653
No 364
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=93.31 E-value=0.39 Score=47.72 Aligned_cols=115 Identities=26% Similarity=0.319 Sum_probs=96.9
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHHHhccCCc----chHHHHHHHHHHHh--cCCHHHHHHHHHHHhccCCCchHHHHHH
Q 009278 3 DEAKAKGNAAFSSGDYEAAVRHFTEAISLSPD----NHVLYSNRSAAHAS--LHNYADALADAKKTVELKPDWSKGYSRL 76 (538)
Q Consensus 3 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~p~~~~~~~~l 76 (538)
......|+.+++.++|..|.--|..++..-|. ......+.+.|+.. .|+|..++..+.-++...|....+++..
T Consensus 54 ~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r 133 (748)
T KOG4151|consen 54 LELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKR 133 (748)
T ss_pred HHHHhhhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhh
Confidence 45677899999999999998889988888874 34556677777765 5799999999999999999999999999
Q ss_pred HHHHhhccCHHHHHHHHHhhhhcCCCcHHHHhhHHHHHHHH
Q 009278 77 GAAHLGLQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAA 117 (538)
Q Consensus 77 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 117 (538)
+.+|...+.++-|++...-....+|.+..+...+..+....
T Consensus 134 ~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~eif~elk~ll 174 (748)
T KOG4151|consen 134 ARKYEALNKLDLAVRDLRIVEKMDPSNVSASEIFEELKGLL 174 (748)
T ss_pred hhHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHH
Confidence 99999999999999998888899999977766555555444
No 365
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=93.27 E-value=0.15 Score=26.16 Aligned_cols=16 Identities=13% Similarity=-0.070 Sum_probs=6.1
Q ss_pred HHHHHHHhcCCHHHHH
Q 009278 41 NRSAAHASLHNYADAL 56 (538)
Q Consensus 41 ~la~~~~~~g~~~~A~ 56 (538)
.+|.++...|++++|.
T Consensus 6 ~la~~~~~~G~~~eA~ 21 (26)
T PF07721_consen 6 ALARALLAQGDPDEAE 21 (26)
T ss_pred HHHHHHHHcCCHHHHH
Confidence 3333333333333333
No 366
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=93.26 E-value=0.25 Score=44.10 Aligned_cols=113 Identities=24% Similarity=0.319 Sum_probs=88.5
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcC-------------------CCCchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCc
Q 009278 396 GNEFFKQQKYPEAIQHYTESLRRN-------------------PKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTF 456 (538)
Q Consensus 396 a~~~~~~~~~~~A~~~~~~al~~~-------------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 456 (538)
|.-.++.+++..|..-|.+++..- +.-.....+++.+-...+.+..|+.....++..++..
T Consensus 229 ~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~ 308 (372)
T KOG0546|consen 229 GNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALRDERSK 308 (372)
T ss_pred chhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceeccccccccChhh
Confidence 444555666666666555554221 1112356678889999999999999999899999999
Q ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhc
Q 009278 457 SKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDGVRRCVQQINKAG 508 (538)
Q Consensus 457 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 508 (538)
..+++.++..+....++++|++.++.+....|++..+...+..+-....++.
T Consensus 309 tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~~~~ 360 (372)
T KOG0546|consen 309 TKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKKKQYN 360 (372)
T ss_pred CcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHHHHHH
Confidence 9999999999999999999999999999999999999888877766665543
No 367
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=93.18 E-value=1.2 Score=32.10 Aligned_cols=59 Identities=20% Similarity=0.361 Sum_probs=47.9
Q ss_pred HHhcccHHHHHHHHHHHHhhCCCC---------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccch
Q 009278 260 AYKKKEFEKAIEHYSSALELDDED---------ISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELR 318 (538)
Q Consensus 260 ~~~~~~~~~A~~~~~~al~~~p~~---------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~ 318 (538)
....|+|..|++.+.+..+..... ..+...+|.++...|++++|+..+++++.+.....
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~ 75 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENG 75 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHC
Confidence 467899999998888888653321 35678899999999999999999999999876543
No 368
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=93.12 E-value=4.7 Score=37.09 Aligned_cols=33 Identities=24% Similarity=0.284 Sum_probs=19.7
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 009278 389 ADEEREKGNEFFKQQKYPEAIQHYTESLRRNPK 421 (538)
Q Consensus 389 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~ 421 (538)
+...+.+|.+..-+++|..|.++|-.|+...|.
T Consensus 247 ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq 279 (493)
T KOG2581|consen 247 ARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQ 279 (493)
T ss_pred HHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcc
Confidence 344455566666666666666666666666665
No 369
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.99 E-value=0.48 Score=41.66 Aligned_cols=63 Identities=16% Similarity=0.178 Sum_probs=58.4
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHHHhccCCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhcc
Q 009278 3 DEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVEL 65 (538)
Q Consensus 3 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 65 (538)
.++..++..+...|+++.++..+++.+..+|.+...|..+-..|+..|+...|+..|++.-+.
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 356788999999999999999999999999999999999999999999999999999987654
No 370
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=92.73 E-value=9.5 Score=36.46 Aligned_cols=96 Identities=18% Similarity=0.002 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHHHHH
Q 009278 249 KALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARAL 328 (538)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (538)
+-..+..+-.++...-.+.-....+.+++... .+-.+++.++.||... ..++-...+++..+.+-++......++..|
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~-e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~y 142 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG-ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKY 142 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 33344445555555556666667777777665 4567788888998887 556677788888887766644433333333
Q ss_pred HHhHHHHHHhhhcccChhHHHHHHHHHHhc
Q 009278 329 TRKGTALVKMAKCSKDYEPAIETFQKALTE 358 (538)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 358 (538)
-. .+ -..+..+|.+++..
T Consensus 143 Ek--------ik----~sk~a~~f~Ka~yr 160 (711)
T COG1747 143 EK--------IK----KSKAAEFFGKALYR 160 (711)
T ss_pred HH--------hc----hhhHHHHHHHHHHH
Confidence 22 33 67888888888763
No 371
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=92.58 E-value=1.3 Score=46.96 Aligned_cols=141 Identities=15% Similarity=0.180 Sum_probs=101.1
Q ss_pred cCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhc--------CCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhc---
Q 009278 384 FDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRR--------NPKDPRTYSNRAACYTKLGAMPEGLKDADKCIEL--- 452 (538)
Q Consensus 384 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--- 452 (538)
+.|.....+..++.++...|++++|+..-.++.-+ .|+....+.+++...+..++...|...+.++..+
T Consensus 968 ~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~L 1047 (1236)
T KOG1839|consen 968 LHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLL 1047 (1236)
T ss_pred cchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhcc
Confidence 67888899999999999999999999888777543 2334567788888888888888888888888765
Q ss_pred -----CCCchHHHHHHHHHHHHccCHHHHHHHHHHHhccC-----CC---CHHHHHHHHHHHHHhhhhccCCCChHHHHH
Q 009278 453 -----DPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHD-----PQ---NQELLDGVRRCVQQINKAGRGELSPEELKE 519 (538)
Q Consensus 453 -----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-----p~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 519 (538)
.|.-.....+++.++...++++.|+.+.+.|+..+ |. ....+..++++...++.+..|....+....
T Consensus 1048 s~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~ 1127 (1236)
T KOG1839|consen 1048 SSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYG 1127 (1236)
T ss_pred ccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHH
Confidence 45555566788888888899999999999998753 21 233455556666666666555544343444
Q ss_pred HHHhc
Q 009278 520 RQAKG 524 (538)
Q Consensus 520 ~~~~~ 524 (538)
.+...
T Consensus 1128 iy~~q 1132 (1236)
T KOG1839|consen 1128 IYKEQ 1132 (1236)
T ss_pred HHHHh
Confidence 44433
No 372
>PRK11619 lytic murein transglycosylase; Provisional
Probab=92.51 E-value=14 Score=37.77 Aligned_cols=120 Identities=7% Similarity=-0.060 Sum_probs=63.8
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCChh-------
Q 009278 291 AAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPD------- 363 (538)
Q Consensus 291 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~------- 363 (538)
+..-....+.+.|...+.+.....+-..... ..+...++.-...... ..+|...+..+.....+..
T Consensus 248 ~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~---~~~~~~lA~~~a~~~~----~~~a~~w~~~~~~~~~~~~~~e~r~r 320 (644)
T PRK11619 248 AFASVARQDAENARLMIPSLVRAQKLNEDQR---QELRDIVAWRLMGNDV----TDEQAKWRDDVIMRSQSTSLLERRVR 320 (644)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHhcCCCHHHH---HHHHHHHHHHHHhccC----CHHHHHHHHhcccccCCcHHHHHHHH
Confidence 3334455667778877776544433222221 1222222222222211 3455555555443322222
Q ss_pred HHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009278 364 TLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLR 417 (538)
Q Consensus 364 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 417 (538)
.....++++.....+..+...........+-+|..+...|+.++|...|+++..
T Consensus 321 ~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 321 MALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 122445555555555554444445677788888888888999999988888754
No 373
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=92.16 E-value=11 Score=35.93 Aligned_cols=66 Identities=15% Similarity=0.144 Sum_probs=57.3
Q ss_pred hhcCCHHHHHHHHHHHhccCCcchHHHHHHHHHHHhcCC-HHHHHHHHHHHhccCCCchHHHHHHHH
Q 009278 13 FSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHN-YADALADAKKTVELKPDWSKGYSRLGA 78 (538)
Q Consensus 13 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~la~ 78 (538)
.+.+.+.+--..|.+++..+|++++.|..-|.-.+..+. .+.|...|.+++..+|+++..|...-+
T Consensus 116 kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~eyfr 182 (568)
T KOG2396|consen 116 KKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWKEYFR 182 (568)
T ss_pred HHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHHHHHH
Confidence 344558999999999999999999999999988887776 999999999999999999988755433
No 374
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=92.02 E-value=0.65 Score=40.35 Aligned_cols=67 Identities=12% Similarity=0.064 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhccCCCChHHHHHHHHhcc
Q 009278 459 GYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDGVRRCVQQINKAGRGELSPEELKERQAKGM 525 (538)
Q Consensus 459 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 525 (538)
.+...+..|...|.+.+|+++.+++++++|-+.+.+..+..++..+|+.-.+...++++.+.+++..
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~vleael 347 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAEL 347 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHh
Confidence 3445567777888888888888888888888888888888888888888888888887777776644
No 375
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=91.83 E-value=0.83 Score=41.09 Aligned_cols=62 Identities=13% Similarity=0.106 Sum_probs=36.6
Q ss_pred HHHHHHHHHhcCCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCchHHHHHHHHHHHH
Q 009278 408 AIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFF 469 (538)
Q Consensus 408 A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 469 (538)
|..+|.+|+.+.|.+...++.+|.++...|+.-.|+-+|-+++-.....+.+..++..++.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 45666666666666666666666666666666666666666665443345566666666555
No 376
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=91.71 E-value=9.6 Score=34.25 Aligned_cols=188 Identities=14% Similarity=0.089 Sum_probs=111.0
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHHHHHHHhHHHHHHhhhcccCh
Q 009278 266 FEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDY 345 (538)
Q Consensus 266 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (538)
-++|+..-.-...+-|..++++-.++.+.+...+...=...=-..+-+...+ ..+...+. .
T Consensus 212 c~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~AR~~~~G~~vlL~dQD--------r~lW~r~l-----------I 272 (415)
T COG4941 212 CDEAIRLGRLLARLLPGEPEALGLLALMLLQESRRPARFDADGEPVLLEDQD--------RSLWDRAL-----------I 272 (415)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhccCCCCCeeeccccc--------hhhhhHHH-----------H
Confidence 4677777777778888888888777776655432211000000000011111 11112222 6
Q ss_pred hHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHH-----hcCChHHHHHHHHHHHhcCC
Q 009278 346 EPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFF-----KQQKYPEAIQHYTESLRRNP 420 (538)
Q Consensus 346 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~-----~~~~~~~A~~~~~~al~~~~ 420 (538)
+++...+.+++.... |.-....-.++-++. ..-+|..-..+|.-.....|
T Consensus 273 ~eg~all~rA~~~~~-------------------------pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~ap 327 (415)
T COG4941 273 DEGLALLDRALASRR-------------------------PGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAP 327 (415)
T ss_pred HHHHHHHHHHHHcCC-------------------------CChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCC
Confidence 666667777766322 222222223333332 23456666666766666666
Q ss_pred CCchhHhHHHHHHHHhCCchhHHHHHHHHHhc--CCCchHHHHHHHHHHHHccCHHHHHHHHHHHhccCCCCHHHHHHHH
Q 009278 421 KDPRTYSNRAACYTKLGAMPEGLKDADKCIEL--DPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDGVR 498 (538)
Q Consensus 421 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 498 (538)
+|.+-.|.+....+..-...++...+-.... -..+...+-..|.++.++|+.++|...|++++.+.++..+......
T Consensus 328 -SPvV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l~~ 406 (415)
T COG4941 328 -SPVVTLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFLRQ 406 (415)
T ss_pred -CCeEeehHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 5666667777766666677777777665544 2334456677899999999999999999999999988776654443
No 377
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=91.58 E-value=0.48 Score=36.89 Aligned_cols=48 Identities=19% Similarity=0.010 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHHHHHhhcc
Q 009278 37 VLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQ 84 (538)
Q Consensus 37 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 84 (538)
+.....+...+..|++.-|.+..+.++..+|++..+...++.++..+|
T Consensus 71 d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg 118 (141)
T PF14863_consen 71 DKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLG 118 (141)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 344444444455555555555555555555555555555555554444
No 378
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=91.57 E-value=8.6 Score=33.41 Aligned_cols=48 Identities=29% Similarity=0.331 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHh-----hCCCCHH---HHHHHHHHH-HHhCCHHHHHHHHHHHHHc
Q 009278 266 FEKAIEHYSSALE-----LDDEDIS---YLTNRAAVY-LEMGKYEECIKDCDKAVER 313 (538)
Q Consensus 266 ~~~A~~~~~~al~-----~~p~~~~---~~~~la~~~-~~~~~~~~A~~~~~~~~~~ 313 (538)
.++|...|++|+. +.|.+|. ...+.+..| .-+|+.++|+...++++..
T Consensus 142 ~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~ 198 (236)
T PF00244_consen 142 AEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDE 198 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 3567777777765 3566653 334445444 4589999999998888763
No 379
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=90.59 E-value=17 Score=35.10 Aligned_cols=47 Identities=17% Similarity=0.081 Sum_probs=22.6
Q ss_pred HHHhhcCCHHHHHHHHH--HHhccCCcchHHHHHHHHHHHhcCCHHHHHHH
Q 009278 10 NAAFSSGDYEAAVRHFT--EAISLSPDNHVLYSNRSAAHASLHNYADALAD 58 (538)
Q Consensus 10 ~~~~~~g~~~~A~~~~~--~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 58 (538)
......|+++++..... +.+..-| ..-...++..+.+.|-++.|+..
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~ 317 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQF 317 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhh
Confidence 34556788888776665 2232222 34455666667777777777664
No 380
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=90.04 E-value=10 Score=31.58 Aligned_cols=72 Identities=11% Similarity=0.077 Sum_probs=52.4
Q ss_pred CchhHHHHHHHHHhc-CCCchHHHHHHHHHHHHccCHHHHHHHHHHHhccCCC----CHHHHHHHHHHHHHhhhhccC
Q 009278 438 AMPEGLKDADKCIEL-DPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQ----NQELLDGVRRCVQQINKAGRG 510 (538)
Q Consensus 438 ~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~l~~~~~~~~~~~~a 510 (538)
.-++|...|-++-.. .-+++...+.+|..|. ..+.++|+..+.+++++.+. |++++..|+.++...|+++.|
T Consensus 121 ~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 121 GDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred CcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 346666666554332 1246777788887776 56888899999999887543 488888999999988888776
No 381
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=89.92 E-value=4.5 Score=37.96 Aligned_cols=106 Identities=11% Similarity=0.058 Sum_probs=66.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcC---------CCCchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCchHHHHH
Q 009278 392 EREKGNEFFKQQKYPEAIQHYTESLRRN---------PKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTR 462 (538)
Q Consensus 392 ~~~la~~~~~~~~~~~A~~~~~~al~~~---------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 462 (538)
...+..++.-.|+|..|++.++.. +++ +-+..+++..|-+|+.+++|.+|++.|..++-.-......+..
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~k~~~~~ 203 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRTKNQYHQ 203 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 445678888999999999988653 222 2245788999999999999999999999887532111101111
Q ss_pred HHHHHH-HccCHHHHHHHHHHHhccCCC--CHHHHHHHH
Q 009278 463 KGAIQF-FLKEYDKALETYQEGLKHDPQ--NQELLDGVR 498 (538)
Q Consensus 463 l~~~~~-~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~ 498 (538)
...-+- -.+..++....+--++.+.|. +..+...+.
T Consensus 204 ~~~q~d~i~K~~eqMyaLlAic~~l~p~~lde~i~~~lk 242 (404)
T PF10255_consen 204 RSYQYDQINKKNEQMYALLAICLSLCPQRLDESISSQLK 242 (404)
T ss_pred ccchhhHHHhHHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Confidence 111111 124455566666667777785 444443333
No 382
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=89.91 E-value=25 Score=35.97 Aligned_cols=61 Identities=10% Similarity=-0.044 Sum_probs=41.5
Q ss_pred CHHHHHHHHHHHhccCCCchHHHHHHHHHHhhccCHHHHHHHHHhhhhcCCCcHHHHhhHH
Q 009278 51 NYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNEALKSGLA 111 (538)
Q Consensus 51 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 111 (538)
.-+.=+..++.-+.+++.+...+..|-.++...|++++-...-..+.++.|.++..|....
T Consensus 94 ~~~~ei~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl 154 (881)
T KOG0128|consen 94 GGNQEIRTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWL 154 (881)
T ss_pred cchhHHHHHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHH
Confidence 3444455566666777777777777777777777777776666667777777777666544
No 383
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=89.79 E-value=22 Score=35.19 Aligned_cols=80 Identities=10% Similarity=0.084 Sum_probs=46.6
Q ss_pred HHhhcCCHHHHHHHHHHHhccCCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhccC--------------CCchHHHHHH
Q 009278 11 AAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELK--------------PDWSKGYSRL 76 (538)
Q Consensus 11 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------------p~~~~~~~~l 76 (538)
.++..|.|++|...---- . ...-|-.+|...+..=+++-|.+.|.++-.+. ...| --..+
T Consensus 565 q~Ieag~f~ea~~iaclg--V---v~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P-~~iLl 638 (1081)
T KOG1538|consen 565 QYIERGLFKEAYQIACLG--V---TDTDWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETP-NDLLL 638 (1081)
T ss_pred hhhhccchhhhhcccccc--e---ecchHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCc-hHHHH
Confidence 455666666654431110 0 11335556666666666777777776654321 1112 23467
Q ss_pred HHHHhhccCHHHHHHHHHhh
Q 009278 77 GAAHLGLQDYIEAVNSYKKG 96 (538)
Q Consensus 77 a~~~~~~~~~~~A~~~~~~a 96 (538)
|.++.-.|.|.+|.+.|.+.
T Consensus 639 A~~~Ay~gKF~EAAklFk~~ 658 (1081)
T KOG1538|consen 639 ADVFAYQGKFHEAAKLFKRS 658 (1081)
T ss_pred HHHHHhhhhHHHHHHHHHHc
Confidence 88888889999999988764
No 384
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=89.29 E-value=19 Score=33.60 Aligned_cols=104 Identities=13% Similarity=0.097 Sum_probs=86.1
Q ss_pred ChHHHHHHHHHHHhcCCCCchhHhHHHHHHHHhCC--chhHHHHHHHHHhcCCCchHHHHHHHHHHHHcc----CHHHHH
Q 009278 404 KYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGA--MPEGLKDADKCIELDPTFSKGYTRKGAIQFFLK----EYDKAL 477 (538)
Q Consensus 404 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~--~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g----~~~~A~ 477 (538)
-.++-+.+...+++.+|++..+|+.+.+++.+.+. +..=+..++++++.+|.+-.+|...-.+..... ...+=+
T Consensus 90 ~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El 169 (421)
T KOG0529|consen 90 LLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEEL 169 (421)
T ss_pred hhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHH
Confidence 46677788889999999999999999999988775 578899999999999999888877666655432 356778
Q ss_pred HHHHHHhccCCCCHHHHHHHHHHHHHhhhh
Q 009278 478 ETYQEGLKHDPQNQELLDGVRRCVQQINKA 507 (538)
Q Consensus 478 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 507 (538)
++..+++.-++.|-.+|.....++..+-..
T Consensus 170 ~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~ 199 (421)
T KOG0529|consen 170 EFTTKLINDNFSNYSAWHYRSLLLSTLHPK 199 (421)
T ss_pred HHHHHHHhccchhhhHHHHHHHHHHHhccc
Confidence 889999999999999999988888755433
No 385
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=89.17 E-value=1.4 Score=38.39 Aligned_cols=61 Identities=20% Similarity=0.173 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHHHHHhhccCHHHHHHHHHhhh
Q 009278 37 VLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGL 97 (538)
Q Consensus 37 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al 97 (538)
..+...+..|...|.+.+|++..++++.++|-+...+..+-.++...|+--.|.+.|++.-
T Consensus 280 kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 280 KLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 4455677888899999999999999999999999999999999999999888888887653
No 386
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=89.12 E-value=22 Score=34.19 Aligned_cols=176 Identities=12% Similarity=0.061 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHHHHHHHhHHHHHHhhhccc---ChhHHHHHHHHHHhcCCCh
Q 009278 286 YLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSK---DYEPAIETFQKALTEHRNP 362 (538)
Q Consensus 286 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~A~~~~~~~~~~~~~~ 362 (538)
....+|.+++.+|+|+-|...|+.+.+-..+ ...+..++-++-..+.+....+.... ..+....+++.++
T Consensus 210 q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~-Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~------ 282 (414)
T PF12739_consen 210 QMRRLADLAFMLRDYELAYSTYRLLKKDFKN-DKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAY------ 282 (414)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHHHhh-chhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHH------
Confidence 3456788888888888888888877764432 23444444455444444444433100 0112222222222
Q ss_pred hHHHhhhhHHHHHHHHHHH----HHcCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhc--CCC-----CchhHhHHHH
Q 009278 363 DTLKKLNEAEKAKKELEQQ----EIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRR--NPK-----DPRTYSNRAA 431 (538)
Q Consensus 363 ~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~~~-----~~~~~~~la~ 431 (538)
..|.+. .........+....+.++...+.+.+|...+-+.... ..+ ..-++-..|.
T Consensus 283 -------------~~Y~~~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~~~l~~~~~alllE~~a~ 349 (414)
T PF12739_consen 283 -------------YTYLKSALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEILESDLRPFGSALLLEQAAY 349 (414)
T ss_pred -------------HHHHhhhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHH
Confidence 222221 1112233455666777788888888877766665544 211 2223334444
Q ss_pred HH--HHhCCchhHHHHHHHHHhcCCCchHHHHHHHHHHHHccCHHHHHHHHHHHhccCC
Q 009278 432 CY--TKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDP 488 (538)
Q Consensus 432 ~~--~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 488 (538)
+| ........-..-++ ..+--+..-|.-|.+.|+...|..+|.+++....
T Consensus 350 ~~~~~~~~~~~~~~~r~R-------K~af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~ 401 (414)
T PF12739_consen 350 CYASLRSNRPSPGLTRFR-------KYAFHMVLAGHRYSKAGQKKHALRCYKQALQVYE 401 (414)
T ss_pred hhcccccCCCCccchhhH-------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhC
Confidence 44 11100000000000 0111223346778889999999999999988754
No 387
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=89.08 E-value=15 Score=32.18 Aligned_cols=127 Identities=15% Similarity=0.123 Sum_probs=89.2
Q ss_pred HHHHHHHcCCCchHHHHHHHHHHHhc--CChHHHHHHHHHHHhcCCCCchhHhHHHHHH------HHhCCchhHHHHHHH
Q 009278 377 ELEQQEIFDPKIADEEREKGNEFFKQ--QKYPEAIQHYTESLRRNPKDPRTYSNRAACY------TKLGAMPEGLKDADK 448 (538)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~la~~~~~~--~~~~~A~~~~~~al~~~~~~~~~~~~la~~~------~~~~~~~~A~~~~~~ 448 (538)
.+..+.+.+|.+...|...-.++... .++..-..+.++.++.++.+..+|...-.+. ..-..+..-.++-..
T Consensus 96 ~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~rEl~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S~~k~e~eytt~ 175 (328)
T COG5536 96 FLDEALKDNPKNYQIWHHRQWMLELFPKPSWGRELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHELEYTTS 175 (328)
T ss_pred HHHHHHhcCCchhhhhHHHHHHHHhCCCcccchhHHHHHHHhcccccccceeeeEeeeeecchhhccchhHHHHHHhHHH
Confidence 34444458899998888877777654 6688888888999999999888776655444 333344455666677
Q ss_pred HHhcCCCchHHHHHH---HHHHHHccC------HHHHHHHHHHHhccCCCCHHHHHHHHHHHHH
Q 009278 449 CIELDPTFSKGYTRK---GAIQFFLKE------YDKALETYQEGLKHDPQNQELLDGVRRCVQQ 503 (538)
Q Consensus 449 al~~~p~~~~~~~~l---~~~~~~~g~------~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 503 (538)
++..++.+..+|... -...+..|+ +++-+++.-.++-.+|++..+|..+..+...
T Consensus 176 ~I~tdi~N~SaW~~r~~~~~~~~~~~~visqk~l~~eL~~i~~~if~~p~~~S~w~y~r~~~~~ 239 (328)
T COG5536 176 LIETDIYNNSAWHHRYIWIERRFNRGDVISQKYLEKELEYIFDKIFTDPDNQSVWGYLRGVSSE 239 (328)
T ss_pred HHhhCCCChHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhhhhcCccccchhhHHHHHhcc
Confidence 788899999888776 333333444 4556677777777899998888777666544
No 388
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=89.03 E-value=1.5 Score=39.45 Aligned_cols=62 Identities=16% Similarity=0.057 Sum_probs=51.1
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHhHHHHHHHH
Q 009278 374 AKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTK 435 (538)
Q Consensus 374 a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 435 (538)
|..+|.++..+.|.....++.+|.++...|+.-.|+-+|-+++-.....+.+..++...+.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 67889999999999999999999999999999999999999986655567788888888877
No 389
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=88.64 E-value=1.5 Score=29.59 Aligned_cols=29 Identities=24% Similarity=0.310 Sum_probs=20.7
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHHHhc
Q 009278 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAIS 30 (538)
Q Consensus 2 a~~~~~~g~~~~~~g~~~~A~~~~~~al~ 30 (538)
|-.+..+|..+-+.|++.+|+.+|+++++
T Consensus 6 A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe 34 (75)
T cd02682 6 ARKYAINAVKAEKEGNAEDAITNYKKAIE 34 (75)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 45566777777888888887777766553
No 390
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=88.44 E-value=17 Score=31.99 Aligned_cols=57 Identities=18% Similarity=0.046 Sum_probs=33.1
Q ss_pred hHhHHHHHHHHhCCchhHHHHHHHHHhcCCC------chHHHHHHHHHHHHccCHHHHHHHHH
Q 009278 425 TYSNRAACYTKLGAMPEGLKDADKCIELDPT------FSKGYTRKGAIQFFLKEYDKALETYQ 481 (538)
Q Consensus 425 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~ 481 (538)
+...+|..|+..|++++|+.+|+.+...... ...+...+..|+...|+.+..+.+.-
T Consensus 180 l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~l 242 (247)
T PF11817_consen 180 LSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSL 242 (247)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 4455666677777777777777766544221 12344555666666666666555443
No 391
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=87.95 E-value=1.4 Score=23.75 Aligned_cols=20 Identities=15% Similarity=0.047 Sum_probs=7.6
Q ss_pred HHHHHHHHHhccCCCchHHH
Q 009278 54 DALADAKKTVELKPDWSKGY 73 (538)
Q Consensus 54 ~A~~~~~~al~~~p~~~~~~ 73 (538)
.|...|++++...|.++..|
T Consensus 5 ~~r~i~e~~l~~~~~~~~~W 24 (33)
T smart00386 5 RARKIYERALEKFPKSVELW 24 (33)
T ss_pred HHHHHHHHHHHHCCCChHHH
Confidence 33333333333333333333
No 392
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=87.39 E-value=3.1 Score=24.70 Aligned_cols=24 Identities=13% Similarity=0.059 Sum_probs=12.9
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHh
Q 009278 461 TRKGAIQFFLKEYDKALETYQEGL 484 (538)
Q Consensus 461 ~~l~~~~~~~g~~~~A~~~~~~al 484 (538)
+.+|.+|..+|+.+.|...++.++
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHH
Confidence 345555555555555555555555
No 393
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=86.97 E-value=1.7 Score=23.34 Aligned_cols=29 Identities=21% Similarity=0.321 Sum_probs=16.7
Q ss_pred cCHHHHHHHHHHHhccCCCCHHHHHHHHH
Q 009278 471 KEYDKALETYQEGLKHDPQNQELLDGVRR 499 (538)
Q Consensus 471 g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 499 (538)
|+.+.|...|++++...|.++.+|..+..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 34555666666666666666666555443
No 394
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=86.88 E-value=9 Score=32.18 Aligned_cols=64 Identities=9% Similarity=0.038 Sum_probs=57.8
Q ss_pred HHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhh
Q 009278 257 GNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSD 320 (538)
Q Consensus 257 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 320 (538)
...+.+.+...+|+...+.-++..|.+......+-.++.-.|+|++|...++-+-.+.|+....
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~ 71 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVG 71 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchH
Confidence 3457788999999999999999999999999999999999999999999999999999987544
No 395
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=86.47 E-value=1.6 Score=40.91 Aligned_cols=60 Identities=23% Similarity=0.263 Sum_probs=48.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhccC---------CCchHHHHHHHHHHhhccCHHHHHHHHHhhhh
Q 009278 38 LYSNRSAAHASLHNYADALADAKKTVELK---------PDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLD 98 (538)
Q Consensus 38 ~~~~la~~~~~~g~~~~A~~~~~~al~~~---------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 98 (538)
+...+.+++.-+|+|..|++.++-. .++ +-+...++..|.+|+.+++|.+|++.|...+-
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556778889999999999998763 333 23456789999999999999999999998764
No 396
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=86.42 E-value=1.6 Score=25.93 Aligned_cols=25 Identities=12% Similarity=0.080 Sum_probs=16.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhc
Q 009278 40 SNRSAAHASLHNYADALADAKKTVE 64 (538)
Q Consensus 40 ~~la~~~~~~g~~~~A~~~~~~al~ 64 (538)
+.+|.+|+.+|+.+.|.+.+++++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4566666666666666666666663
No 397
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=86.42 E-value=10 Score=31.80 Aligned_cols=63 Identities=14% Similarity=0.162 Sum_probs=54.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCchH
Q 009278 396 GNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSK 458 (538)
Q Consensus 396 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~ 458 (538)
..-+.+.+..++|+...+.-++..|.+......+-.++.-.|+|++|..-++-+-.+.|++..
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~ 70 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTV 70 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccch
Confidence 345677888999999999999999999988888888999999999999999999999887643
No 398
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=85.83 E-value=4.2 Score=31.79 Aligned_cols=55 Identities=15% Similarity=0.157 Sum_probs=42.1
Q ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhccCC
Q 009278 457 SKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDGVRRCVQQINKAGRGE 511 (538)
Q Consensus 457 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~ 511 (538)
.+.....+.-.+..|++.-|.+....++..+|+|.++....+.++.++|...+..
T Consensus 70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~~~ 124 (141)
T PF14863_consen 70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSENA 124 (141)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-SSH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhccCH
Confidence 5566677777888888999999999999999999999999999988888776654
No 399
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=85.74 E-value=35 Score=32.91 Aligned_cols=73 Identities=11% Similarity=-0.001 Sum_probs=42.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHHHHHhhccCHHHHHHHHHhhhhcCCCcHHHHhhHHHHHHH
Q 009278 42 RSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAA 116 (538)
Q Consensus 42 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 116 (538)
+-.++-....+.-....|.+.+... .+..+++.++.||... ..++=...+++.++.+-++...-..|+..|..
T Consensus 72 ~~~~f~~n~k~~~veh~c~~~l~~~-e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk 144 (711)
T COG1747 72 LLTIFGDNHKNQIVEHLCTRVLEYG-ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK 144 (711)
T ss_pred HHHHhccchHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 3333334444455555666666544 3556677777777766 44566666777777766666655555555444
No 400
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=85.44 E-value=16 Score=28.61 Aligned_cols=50 Identities=24% Similarity=0.268 Sum_probs=38.8
Q ss_pred HHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHH
Q 009278 258 NAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCD 308 (538)
Q Consensus 258 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~ 308 (538)
..+...+.+...+.+++.++..++.++..+..+..+|... +..+.+..+.
T Consensus 15 ~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~-~~~~ll~~l~ 64 (140)
T smart00299 15 ELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKY-DPQKEIERLD 64 (140)
T ss_pred HHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHH-CHHHHHHHHH
Confidence 3445568899999999999999888888888998888765 3455555555
No 401
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=85.35 E-value=26 Score=31.06 Aligned_cols=210 Identities=13% Similarity=0.022 Sum_probs=108.2
Q ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhh-----CCCCHHHHHHHHHHHHHhCCHH-HHHHHHHHHHHccccchhh
Q 009278 247 KEKALKEKEAGNAAYKKKEFEKAIEHYSSALEL-----DDEDISYLTNRAAVYLEMGKYE-ECIKDCDKAVERGRELRSD 320 (538)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~~~~~-~A~~~~~~~~~~~~~~~~~ 320 (538)
.+..+.++.-+..+.+.|++..|.+...-.++. .|.+......++.+....+.-+ +-....+++++-. .....
T Consensus 7 ~eAidLL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS-~~~~~ 85 (260)
T PF04190_consen 7 DEAIDLLYSGALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWS-KFGSY 85 (260)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHH-HTSS-
T ss_pred HHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHH-ccCCC
Confidence 345667777788888999988887766555543 3445555567777777665332 3455566666544 11111
Q ss_pred HHHHHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHH-H
Q 009278 321 FKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNE-F 399 (538)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~-~ 399 (538)
...-...+..+|..+.+.++ +.+|..+|-..-. +.. .....-...-.....|...+.+...|.+ |
T Consensus 86 ~~Gdp~LH~~~a~~~~~e~~----~~~A~~Hfl~~~~----~~~------~~~~~ll~~~~~~~~~~e~dlfi~RaVL~y 151 (260)
T PF04190_consen 86 KFGDPELHHLLAEKLWKEGN----YYEAERHFLLGTD----PSA------FAYVMLLEEWSTKGYPSEADLFIARAVLQY 151 (260)
T ss_dssp TT--HHHHHHHHHHHHHTT-----HHHHHHHHHTS-H----HHH------HHHHHHHHHHHHHTSS--HHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhhcc----HHHHHHHHHhcCC----hhH------HHHHHHHHHHHHhcCCcchhHHHHHHHHHH
Confidence 12226778888888888887 9888877743321 000 0000011222233566777777766644 5
Q ss_pred HhcCChHHHHHHHHHHHhc----CCC----------CchhHhHHH--HHHHHhCC---chhHHHHHHHHHhcCCCchHHH
Q 009278 400 FKQQKYPEAIQHYTESLRR----NPK----------DPRTYSNRA--ACYTKLGA---MPEGLKDADKCIELDPTFSKGY 460 (538)
Q Consensus 400 ~~~~~~~~A~~~~~~al~~----~~~----------~~~~~~~la--~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~ 460 (538)
...++...|...+....+. +|. +...++-+. ..-...++ +..-.+.|+..++.+|.....+
T Consensus 152 L~l~n~~~A~~~~~~f~~~~~~~~p~~~~~~~~~~~~~PllnF~~lLl~t~e~~~~~~F~~L~~~Y~~~L~rd~~~~~~L 231 (260)
T PF04190_consen 152 LCLGNLRDANELFDTFTSKLIESHPKLENSDIEYPPSYPLLNFLQLLLLTCERDNLPLFKKLCEKYKPSLKRDPSFKEYL 231 (260)
T ss_dssp HHTTBHHHHHHHHHHHHHHHHHH---EEEEEEEEESS-HHHHHHHHHHHHHHHT-HHHHHHHHHHTHH---HHHHTHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHHhccCcchhccccCCCCCCchHHHHHHHHHHHhcCcHHHHHHHHHHhCccccccHHHHHHH
Confidence 6779999999877666654 442 112222111 11222333 2223333444455567777788
Q ss_pred HHHHHHHHHcc
Q 009278 461 TRKGAIQFFLK 471 (538)
Q Consensus 461 ~~l~~~~~~~g 471 (538)
..+|..|+...
T Consensus 232 ~~IG~~yFgi~ 242 (260)
T PF04190_consen 232 DKIGQLYFGIQ 242 (260)
T ss_dssp HHHHHHHH---
T ss_pred HHHHHHHCCCC
Confidence 88888888744
No 402
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=85.34 E-value=4.2 Score=40.87 Aligned_cols=116 Identities=24% Similarity=0.398 Sum_probs=84.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCC----chhHhHHHHHHHH--hCCchhHHHHHHHHHhcCCCchHHHHHHHHHHH
Q 009278 395 KGNEFFKQQKYPEAIQHYTESLRRNPKD----PRTYSNRAACYTK--LGAMPEGLKDADKCIELDPTFSKGYTRKGAIQF 468 (538)
Q Consensus 395 la~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~--~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 468 (538)
-|..++..+++..|.--|..++.+-|.+ .....+.+.+++. .|+|..++.-..-++...|....+++..+.+|.
T Consensus 59 E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r~~~y~ 138 (748)
T KOG4151|consen 59 EGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKRARKYE 138 (748)
T ss_pred hhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhhhhHHH
Confidence 3667777888888877777777777743 3445566666654 467888888888888888888888888888888
Q ss_pred HccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhccC
Q 009278 469 FLKEYDKALETYQEGLKHDPQNQELLDGVRRCVQQINKAGRG 510 (538)
Q Consensus 469 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a 510 (538)
..+..+-|++...-.....|.++.+...+.+....+...+-+
T Consensus 139 al~k~d~a~rdl~i~~~~~p~~~~~~eif~elk~ll~~~d~~ 180 (748)
T KOG4151|consen 139 ALNKLDLAVRDLRIVEKMDPSNVSASEIFEELKGLLELKDLA 180 (748)
T ss_pred HHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhcCCc
Confidence 888888888888888888888866666555554444333333
No 403
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=85.23 E-value=29 Score=31.48 Aligned_cols=195 Identities=17% Similarity=0.214 Sum_probs=113.0
Q ss_pred HHHHHHHHHHHHHccccchhhHHHHHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCC--------------hhHH
Q 009278 300 YEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRN--------------PDTL 365 (538)
Q Consensus 300 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--------------~~~~ 365 (538)
.+.-+..+..+++........+ ..-..-.++...|...++ |.+|+......+..-.. ...+
T Consensus 104 ~~~~i~l~~~cIeWA~~ekRtF-LRq~Learli~Ly~d~~~----YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y 178 (411)
T KOG1463|consen 104 TGDQIELCTECIEWAKREKRTF-LRQSLEARLIRLYNDTKR----YTEALALINDLLRELKKLDDKILLVEVHLLESKAY 178 (411)
T ss_pred cchHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHhhHH----HHHHHHHHHHHHHHHHhcccccceeeehhhhhHHH
Confidence 3444555555555332221111 112333445566666666 88888777666652211 2245
Q ss_pred HhhhhHHHHHHHHHHHHHc------CCC-chHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC---Cchh---HhHHHHH
Q 009278 366 KKLNEAEKAKKELEQQEIF------DPK-IADEEREKGNEFFKQQKYPEAIQHYTESLRRNPK---DPRT---YSNRAAC 432 (538)
Q Consensus 366 ~~~~~~~~a~~~~~~~~~~------~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~---~~~~---~~~la~~ 432 (538)
..+.+..+|...+..+... .|. ....-..-|..+....+|.-|..+|-.+++-... +..+ +-.+-.|
T Consensus 179 ~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLc 258 (411)
T KOG1463|consen 179 HALRNLPKAKASLTSARTTANAIYCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLC 258 (411)
T ss_pred HHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHHhccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHH
Confidence 5666666666665554432 121 1222234477777889999999999999875431 2222 3333344
Q ss_pred HHHhCCchhHHH--HHHHHHhcCCCchHHHHHHHHHHHH--ccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Q 009278 433 YTKLGAMPEGLK--DADKCIELDPTFSKGYTRKGAIQFF--LKEYDKALETYQEGLKHDPQNQELLDGVRRCVQ 502 (538)
Q Consensus 433 ~~~~~~~~~A~~--~~~~al~~~p~~~~~~~~l~~~~~~--~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 502 (538)
-...+..++--. .-+.+++....+.++....+..+.+ +.+|+.|+..|+.=+..+|- +..++..+|.
T Consensus 259 KIMln~~ddv~~lls~K~~l~y~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~~D~i---vr~Hl~~Lyd 329 (411)
T KOG1463|consen 259 KIMLNLPDDVAALLSAKLALKYAGRDIDAMKAVAEAFGNRSLKDFEKALADYKKELAEDPI---VRSHLQSLYD 329 (411)
T ss_pred HHHhcCHHHHHHHHhhHHHHhccCcchHHHHHHHHHhcCCcHHHHHHHHHHhHHHHhcChH---HHHHHHHHHH
Confidence 445566555433 3456677777778888888888875 57899999999888876664 4444444443
No 404
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=84.50 E-value=35 Score=31.82 Aligned_cols=63 Identities=10% Similarity=0.002 Sum_probs=35.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhc--CC--CCchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCC
Q 009278 393 REKGNEFFKQQKYPEAIQHYTESLRR--NP--KDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPT 455 (538)
Q Consensus 393 ~~la~~~~~~~~~~~A~~~~~~al~~--~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 455 (538)
+.+-..|...+.|+.|.....++.-- .. ..+..++.+|.+..-+++|..|.+++-+|+...|+
T Consensus 213 N~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq 279 (493)
T KOG2581|consen 213 NLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQ 279 (493)
T ss_pred HHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcc
Confidence 33444555555566666655554311 11 12344556666666677777777777777666665
No 405
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=82.60 E-value=45 Score=31.61 Aligned_cols=23 Identities=22% Similarity=0.359 Sum_probs=17.0
Q ss_pred HHHHHhcccHHHHHHHHHHHHhh
Q 009278 257 GNAAYKKKEFEKAIEHYSSALEL 279 (538)
Q Consensus 257 ~~~~~~~~~~~~A~~~~~~al~~ 279 (538)
|.--...|+|+.|+-.+=+++++
T Consensus 248 A~RRa~~gryddAvarlYR~lEl 270 (379)
T PF09670_consen 248 AERRAAQGRYDDAVARLYRALEL 270 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHH
Confidence 44445678999999888888765
No 406
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.55 E-value=64 Score=33.37 Aligned_cols=109 Identities=12% Similarity=0.129 Sum_probs=70.2
Q ss_pred HHHHHhCCHHHHHHHHHHHHHccccchhhHHHHHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCChhHHH---hh
Q 009278 292 AVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLK---KL 368 (538)
Q Consensus 292 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---~~ 368 (538)
.+..+..-|+-|+...+.- ......+..+....|..++..|+ +++|...|-+.+..-..+.+.. ..
T Consensus 342 ~iL~kK~ly~~Ai~LAk~~-------~~d~d~~~~i~~kYgd~Ly~Kgd----f~~A~~qYI~tI~~le~s~Vi~kfLda 410 (933)
T KOG2114|consen 342 DILFKKNLYKVAINLAKSQ-------HLDEDTLAEIHRKYGDYLYGKGD----FDEATDQYIETIGFLEPSEVIKKFLDA 410 (933)
T ss_pred HHHHHhhhHHHHHHHHHhc-------CCCHHHHHHHHHHHHHHHHhcCC----HHHHHHHHHHHcccCChHHHHHHhcCH
Confidence 4555666677777665432 11122236777888888888888 9999999999998766655432 33
Q ss_pred hhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcCChHHHHHH
Q 009278 369 NEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQH 411 (538)
Q Consensus 369 ~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 411 (538)
.+..+-..+++...+..-.+.+--..+-.+|.+.++.++-.++
T Consensus 411 q~IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~ef 453 (933)
T KOG2114|consen 411 QRIKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEF 453 (933)
T ss_pred HHHHHHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHH
Confidence 4455555666666666555555556677777777776554433
No 407
>PF12854 PPR_1: PPR repeat
Probab=81.95 E-value=4.6 Score=22.29 Aligned_cols=27 Identities=19% Similarity=0.303 Sum_probs=20.4
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 009278 283 DISYLTNRAAVYLEMGKYEECIKDCDK 309 (538)
Q Consensus 283 ~~~~~~~la~~~~~~~~~~~A~~~~~~ 309 (538)
+...+..+...|.+.|+.++|.+.+++
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 456677777888888888888887765
No 408
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=81.80 E-value=27 Score=28.51 Aligned_cols=189 Identities=14% Similarity=0.083 Sum_probs=114.7
Q ss_pred HHHHHHHHHHHHHH-hcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-----HhCCHHHHHHHHHHHHHccccchhhH
Q 009278 248 EKALKEKEAGNAAY-KKKEFEKAIEHYSSALELDDEDISYLTNRAAVYL-----EMGKYEECIKDCDKAVERGRELRSDF 321 (538)
Q Consensus 248 ~~~~~~~~~~~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-----~~~~~~~A~~~~~~~~~~~~~~~~~~ 321 (538)
..++....+|..+. -+.+|++|..+|+.--+.+ ..+...+.+|..+. ..++...|+..+..+...+.
T Consensus 32 K~Pe~C~lLgdYlEgi~knF~~A~kv~K~nCden-~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~n~------ 104 (248)
T KOG4014|consen 32 KRPESCQLLGDYLEGIQKNFQAAVKVFKKNCDEN-SYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDANI------ 104 (248)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhccccc-CCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhccCC------
Confidence 35666777887765 4678999999888755443 24566666665554 24578899999999887442
Q ss_pred HHHHHHHHHhHHHHHHhhhc---ccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHH
Q 009278 322 KMIARALTRKGTALVKMAKC---SKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNE 398 (538)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~---~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~ 398 (538)
..+...+|.++..-... .-+..+|.+++.++-.. .+..+.+.+.-.
T Consensus 105 ---~~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl----------------------------~~~~aCf~LS~m 153 (248)
T KOG4014|consen 105 ---PQACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDL----------------------------EDGEACFLLSTM 153 (248)
T ss_pred ---HHHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccC----------------------------CCchHHHHHHHH
Confidence 44555666655443321 12356777777777652 344555555555
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCchHHHHHHHHHHHH----ccCHH
Q 009278 399 FFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFF----LKEYD 474 (538)
Q Consensus 399 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~ 474 (538)
++.... + +....|..... ...+..+.-.++.+.|.++--++-+++ ++.+..++.+.|.. -++.+
T Consensus 154 ~~~g~~--k-------~~t~ap~~g~p-~~~~~~~~~~kDMdka~qfa~kACel~--~~~aCAN~SrMyklGDGv~Kde~ 221 (248)
T KOG4014|consen 154 YMGGKE--K-------FKTNAPGEGKP-LDRAELGSLSKDMDKALQFAIKACELD--IPQACANVSRMYKLGDGVPKDED 221 (248)
T ss_pred Hhccch--h-------hcccCCCCCCC-cchhhhhhhhHhHHHHHHHHHHHHhcC--ChHHHhhHHHHHHccCCCCccHH
Confidence 543321 1 12223321111 123344455667788888888887763 56777777777654 24577
Q ss_pred HHHHHHHHHhcc
Q 009278 475 KALETYQEGLKH 486 (538)
Q Consensus 475 ~A~~~~~~al~~ 486 (538)
+|..+-.+|.++
T Consensus 222 ~Aekyk~rA~e~ 233 (248)
T KOG4014|consen 222 QAEKYKDRAKEI 233 (248)
T ss_pred HHHHHHHHHHHH
Confidence 787777777765
No 409
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=81.55 E-value=8 Score=26.21 Aligned_cols=26 Identities=15% Similarity=0.087 Sum_probs=12.4
Q ss_pred HHHHHHHhccCCCCHHHHHHHHHHHH
Q 009278 477 LETYQEGLKHDPQNQELLDGVRRCVQ 502 (538)
Q Consensus 477 ~~~~~~al~~~p~~~~~~~~l~~~~~ 502 (538)
++.+.+++...|+++.-......+..
T Consensus 33 Ie~L~q~~~~~pD~~~k~~yr~ki~e 58 (75)
T cd02682 33 IEVLSQIVKNYPDSPTRLIYEQMINE 58 (75)
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHH
Confidence 33334444556776654443444433
No 410
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=81.38 E-value=50 Score=31.31 Aligned_cols=64 Identities=9% Similarity=0.055 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHH--HHHH--HHHHHHHhCCHHHHHHHHHHHHHc
Q 009278 250 ALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDIS--YLTN--RAAVYLEMGKYEECIKDCDKAVER 313 (538)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~--~~~~--la~~~~~~~~~~~A~~~~~~~~~~ 313 (538)
.......+..++..++|..|...+..+...-|.... .+.. .|.-++..-++.+|.+.+++.+..
T Consensus 131 ~~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 131 GDREWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 345667788889999999999999999886344333 3333 345566788999999999988764
No 411
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=81.25 E-value=2.8 Score=28.54 Aligned_cols=29 Identities=24% Similarity=0.169 Sum_probs=21.8
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHHHhc
Q 009278 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAIS 30 (538)
Q Consensus 2 a~~~~~~g~~~~~~g~~~~A~~~~~~al~ 30 (538)
|-.+..+|..+-+.|+|++|+.+|.++++
T Consensus 6 Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie 34 (76)
T cd02681 6 AVQFARLAVQRDQEGRYSEAVFYYKEAAQ 34 (76)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 44566777788888888888888877765
No 412
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=80.99 E-value=28 Score=30.55 Aligned_cols=151 Identities=14% Similarity=0.098 Sum_probs=95.1
Q ss_pred cCCCchHHHHHHHHHHHh--------cCChHHHHHHHHHHHhcCCCCchhHhHHHHHHHHh--CCchhHHHHHHHHHhcC
Q 009278 384 FDPKIADEEREKGNEFFK--------QQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKL--GAMPEGLKDADKCIELD 453 (538)
Q Consensus 384 ~~~~~~~~~~~la~~~~~--------~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~--~~~~~A~~~~~~al~~~ 453 (538)
.+|....+|...-.+... ..-.+.-...+..+++-+|.+..+|...-.++..- .++..-....++.++.+
T Consensus 61 ~npe~ytiwnyr~~I~~h~~~~sedk~~~ldneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~rEl~itkklld~D 140 (328)
T COG5536 61 KNPEFYTIWNYRFSILKHVQMVSEDKEHLLDNELDFLDEALKDNPKNYQIWHHRQWMLELFPKPSWGRELFITKKLLDSD 140 (328)
T ss_pred hCHHHHHHHhhHHHHHhhhhhhcccchhhhhcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCcccchhHHHHHHHhccc
Confidence 555555555544444333 12245567778889999999999999888887665 66888888889999999
Q ss_pred CCchHHHHHHHHHH------HHccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhccCCCC--hHH-HHHHHHhc
Q 009278 454 PTFSKGYTRKGAIQ------FFLKEYDKALETYQEGLKHDPQNQELLDGVRRCVQQINKAGRGELS--PEE-LKERQAKG 524 (538)
Q Consensus 454 p~~~~~~~~l~~~~------~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~--~~~-~~~~~~~~ 524 (538)
|.+..+|...-.+. ..-.++..-.++-..++..++.|..+|..........-+...-... +++ +.-.+.+.
T Consensus 141 srNyH~W~YR~~vl~~ie~~~N~S~~k~e~eytt~~I~tdi~N~SaW~~r~~~~~~~~~~~~visqk~l~~eL~~i~~~i 220 (328)
T COG5536 141 SRNYHVWSYRRWVLRTIEDLFNFSDLKHELEYTTSLIETDIYNNSAWHHRYIWIERRFNRGDVISQKYLEKELEYIFDKI 220 (328)
T ss_pred ccccceeeeEeeeeecchhhccchhHHHHHHhHHHHHhhCCCChHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhhh
Confidence 99887776554444 3333444446666677888999999998875544443332222111 121 22223334
Q ss_pred cCCchhhhhc
Q 009278 525 MQDPKFRTYS 534 (538)
Q Consensus 525 ~~~p~~~~~~ 534 (538)
..+|+.+..+
T Consensus 221 f~~p~~~S~w 230 (328)
T COG5536 221 FTDPDNQSVW 230 (328)
T ss_pred hcCccccchh
Confidence 4477766543
No 413
>PF12854 PPR_1: PPR repeat
Probab=80.85 E-value=4.8 Score=22.20 Aligned_cols=27 Identities=11% Similarity=0.063 Sum_probs=16.6
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHH
Q 009278 35 NHVLYSNRSAAHASLHNYADALADAKK 61 (538)
Q Consensus 35 ~~~~~~~la~~~~~~g~~~~A~~~~~~ 61 (538)
|...|..+-..+.+.|+.++|.+.|++
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 345566666666666666666666654
No 414
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.78 E-value=24 Score=34.68 Aligned_cols=68 Identities=16% Similarity=0.155 Sum_probs=47.1
Q ss_pred hhHHHHHHHHHHhcCCChh----HHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009278 345 YEPAIETFQKALTEHRNPD----TLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLR 417 (538)
Q Consensus 345 ~~~A~~~~~~~~~~~~~~~----~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 417 (538)
+-+...+.++++...++++ +..++|+++.|.+... ..++..-|..+|......+++..|.++|.++-.
T Consensus 623 Fle~~g~~e~AL~~s~D~d~rFelal~lgrl~iA~~la~-----e~~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d 694 (794)
T KOG0276|consen 623 FLESQGMKEQALELSTDPDQRFELALKLGRLDIAFDLAV-----EANSEVKWRQLGDAALSAGELPLASECFLRARD 694 (794)
T ss_pred HhhhccchHhhhhcCCChhhhhhhhhhcCcHHHHHHHHH-----hhcchHHHHHHHHHHhhcccchhHHHHHHhhcc
Confidence 3333444555666665543 5566788887777653 345667788899999999999999999988754
No 415
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=80.71 E-value=8.1 Score=36.01 Aligned_cols=98 Identities=17% Similarity=0.044 Sum_probs=66.9
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHHHHhcc-----------CCcchHHHHHHHHHHHhcCCH----------HHHHHHH
Q 009278 1 MADEAKAKGNAAFSSGDYEAAVRHFTEAISL-----------SPDNHVLYSNRSAAHASLHNY----------ADALADA 59 (538)
Q Consensus 1 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~-----------~p~~~~~~~~la~~~~~~g~~----------~~A~~~~ 59 (538)
|+-.+.++|..++....|++|+.++-.|=+. -.+.+..-..+-+||+.+.+. ..|.+.|
T Consensus 162 mglg~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf 241 (568)
T KOG2561|consen 162 MGLGLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGF 241 (568)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhh
Confidence 4567889999999999999999887665432 223344555677889887753 3344444
Q ss_pred HHHhc--------cC-CCch------HHHHHHHHHHhhccCHHHHHHHHHhhhh
Q 009278 60 KKTVE--------LK-PDWS------KGYSRLGAAHLGLQDYIEAVNSYKKGLD 98 (538)
Q Consensus 60 ~~al~--------~~-p~~~------~~~~~la~~~~~~~~~~~A~~~~~~al~ 98 (538)
.++.- +. |..| ..++.-|.+.+.+|+-++|.++++.+..
T Consensus 242 ~~syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~ 295 (568)
T KOG2561|consen 242 ERSYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHA 295 (568)
T ss_pred hhhhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 43321 11 2222 2455678899999999999999998764
No 416
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=80.60 E-value=5.5 Score=34.99 Aligned_cols=63 Identities=16% Similarity=0.029 Sum_probs=49.2
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC------chHHHHHHHHHHhhccCHHHHHHHHHhhh
Q 009278 35 NHVLYSNRSAAHASLHNYADALADAKKTVELKPD------WSKGYSRLGAAHLGLQDYIEAVNSYKKGL 97 (538)
Q Consensus 35 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~al 97 (538)
-..+...+|..|+..|++++|+.+|+.+...... ...++..+..|+...|+.+..+.+.-+.+
T Consensus 177 ~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 177 ASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 4588889999999999999999999998655332 24567778889999999888877665543
No 417
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=80.20 E-value=8.3 Score=28.59 Aligned_cols=42 Identities=24% Similarity=0.328 Sum_probs=18.6
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHhccCCcchHHHHHHHHHHH
Q 009278 6 KAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHA 47 (538)
Q Consensus 6 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 47 (538)
...|...+..|||..|.+...++-+..+..+-.+..-+.+-.
T Consensus 63 l~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~ 104 (108)
T PF07219_consen 63 LSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQ 104 (108)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 344445555555555555555554443333333333333333
No 418
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=79.94 E-value=3 Score=28.57 Aligned_cols=29 Identities=21% Similarity=0.318 Sum_probs=20.0
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHHHhc
Q 009278 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAIS 30 (538)
Q Consensus 2 a~~~~~~g~~~~~~g~~~~A~~~~~~al~ 30 (538)
|-.++.+|...-..|+|++|+.+|.++++
T Consensus 6 a~~l~~~Ave~D~~g~y~eAl~~Y~~aie 34 (77)
T cd02683 6 AKEVLKRAVELDQEGRFQEALVCYQEGID 34 (77)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34566777777777777777777766654
No 419
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=79.40 E-value=3.7 Score=27.37 Aligned_cols=28 Identities=36% Similarity=0.419 Sum_probs=20.8
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHHHhc
Q 009278 3 DEAKAKGNAAFSSGDYEAAVRHFTEAIS 30 (538)
Q Consensus 3 ~~~~~~g~~~~~~g~~~~A~~~~~~al~ 30 (538)
-.+...|..+-+.|+|++|+.+|.++++
T Consensus 6 ~~~~~~Av~~D~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 6 IELIKKAVEADEAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3566777777788888888888777664
No 420
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=79.19 E-value=63 Score=31.15 Aligned_cols=96 Identities=14% Similarity=-0.015 Sum_probs=62.6
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHhccCCcc------hHHHHHHHHHHHhcCCH--------------HHHHHHHHHH-
Q 009278 4 EAKAKGNAAFSSGDYEAAVRHFTEAISLSPDN------HVLYSNRSAAHASLHNY--------------ADALADAKKT- 62 (538)
Q Consensus 4 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~--------------~~A~~~~~~a- 62 (538)
....+|+.++-.|+|+-|...|+.+....-++ +.+.-..|.+.+..+.. +.|...|.++
T Consensus 210 q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~~~ 289 (414)
T PF12739_consen 210 QMRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLKSA 289 (414)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHhhh
Confidence 45789999999999999999999987754332 23444555666655532 3334444442
Q ss_pred ---hccCCCchHHHHHHHHHHhhccCHHHHHHHHHhhhhc
Q 009278 63 ---VELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDI 99 (538)
Q Consensus 63 ---l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 99 (538)
......-..+.+..+.++...|.+.+|...+-++...
T Consensus 290 ~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~ 329 (414)
T PF12739_consen 290 LPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSE 329 (414)
T ss_pred ccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence 1111233456777788888889888887777766644
No 421
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=79.03 E-value=18 Score=33.64 Aligned_cols=105 Identities=19% Similarity=0.166 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHcccc-chhhHHHH
Q 009278 249 KALKEKEAGNAAYKKKEFEKAIEHYSSALELDDED---ISYLTNRAAVYLEMGKYEECIKDCDKAVERGRE-LRSDFKMI 324 (538)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~ 324 (538)
--.++..+|..|...|+.+.|+++|.++-..+... ...+.++..+-..+|+|..-..+..++...-.. ........
T Consensus 149 iRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~ 228 (466)
T KOG0686|consen 149 IRRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVP 228 (466)
T ss_pred HHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcC
Confidence 35678889999999999999999999987766543 456778888888999999888888888764200 00111111
Q ss_pred HHHHHHhHHHHHHhhhcccChhHHHHHHHHHHh
Q 009278 325 ARALTRKGTALVKMAKCSKDYEPAIETFQKALT 357 (538)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 357 (538)
+.+....|.+...+++ |..|..+|-.+..
T Consensus 229 ~kl~C~agLa~L~lkk----yk~aa~~fL~~~~ 257 (466)
T KOG0686|consen 229 AKLKCAAGLANLLLKK----YKSAAKYFLLAEF 257 (466)
T ss_pred cchHHHHHHHHHHHHH----HHHHHHHHHhCCC
Confidence 3445556666666667 8888888766543
No 422
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=77.89 E-value=1.1e+02 Score=33.20 Aligned_cols=187 Identities=17% Similarity=0.120 Sum_probs=109.9
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHHHHHHHhHHH------HHHhhhcccChhHHHHHHHHHHh
Q 009278 284 ISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTA------LVKMAKCSKDYEPAIETFQKALT 357 (538)
Q Consensus 284 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~A~~~~~~~~~ 357 (538)
+...+.+|.+|...|+..+|+.+|.++..-..+. .++..+-.. -...|+.......|+.+|.++++
T Consensus 920 ~v~rfmlg~~yl~tge~~kAl~cF~~a~Sg~ge~--------~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~r 991 (1480)
T KOG4521|consen 920 PVIRFMLGIAYLGTGEPVKALNCFQSALSGFGEG--------NALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVR 991 (1480)
T ss_pred HHHHHhhheeeecCCchHHHHHHHHHHhhccccH--------HHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHH
Confidence 4456788999999999999999999998755442 222222111 01122222223457888888887
Q ss_pred cCCChhHHHhhhhHHHHHHHHHHHHHcCC----CchHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCc---hhHhHHH
Q 009278 358 EHRNPDTLKKLNEAEKAKKELEQQEIFDP----KIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDP---RTYSNRA 430 (538)
Q Consensus 358 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~---~~~~~la 430 (538)
.+...+-.+.+.+...++++.-| ..+..+..+-.-+...|.+-+|... +-.+|+.. ..+..+.
T Consensus 992 ------lle~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~a----i~~npdserrrdcLRqlv 1061 (1480)
T KOG4521|consen 992 ------LLEEHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKA----ILRNPDSERRRDCLRQLV 1061 (1480)
T ss_pred ------HHHHhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHH----HHcCCcHHHHHHHHHHHH
Confidence 55666667777777777776433 3334444555556677888777643 34466532 3556666
Q ss_pred HHHHHhCCch------------hHHH-HHHHHHhcCCCchHHHHH-HHHHHHHccCHHHHH-HHHHHHhccCC
Q 009278 431 ACYTKLGAMP------------EGLK-DADKCIELDPTFSKGYTR-KGAIQFFLKEYDKAL-ETYQEGLKHDP 488 (538)
Q Consensus 431 ~~~~~~~~~~------------~A~~-~~~~al~~~p~~~~~~~~-l~~~~~~~g~~~~A~-~~~~~al~~~p 488 (538)
.+++..|.++ +-.. .++.+-...|-...-++. |=-.+...+++.+|- ..|+.+..+..
T Consensus 1062 ivLfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMYEyamrl~s 1134 (1480)
T KOG4521|consen 1062 IVLFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMYEYAMRLES 1134 (1480)
T ss_pred HHHHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHHHHHHHhcc
Confidence 7777777753 2223 334444444433333333 334455678877765 45677776643
No 423
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=77.18 E-value=91 Score=31.94 Aligned_cols=82 Identities=13% Similarity=0.058 Sum_probs=32.8
Q ss_pred HHHhhcCCHHHHHHHHHHHhccCCcch--HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchH------HHHHHHHHHh
Q 009278 10 NAAFSSGDYEAAVRHFTEAISLSPDNH--VLYSNRSAAHASLHNYADALADAKKTVELKPDWSK------GYSRLGAAHL 81 (538)
Q Consensus 10 ~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~la~~~~ 81 (538)
.+++-.|+|+.|+.++-+ .+.+. .+++.++..+..+ ..-.-..-...+..+|.++. ....... .+
T Consensus 266 ~~LlLtgqFE~AI~~L~~----~~~~~~dAVH~AIaL~~~gL--L~~~~~~~~~lls~~~~~~~~ln~arLI~~Y~~-~F 338 (613)
T PF04097_consen 266 QVLLLTGQFEAAIEFLYR----NEFNRVDAVHFAIALAYYGL--LRVSDSSSAPLLSVDPGDPPPLNFARLIGQYTR-SF 338 (613)
T ss_dssp HHHHHTT-HHHHHHHHHT------T-HHHHHHHHHHHHHTT--------------------------HHHHHHHHHH-TT
T ss_pred HHHHHHhhHHHHHHHHHh----hccCcccHHHHHHHHHHcCC--CCCCCccccceeeecCCCCCCcCHHHHHHHHHH-HH
Confidence 456677899999998876 22222 3444444444333 22222222555555555432 2222222 34
Q ss_pred hccCHHHHHHHHHhhhh
Q 009278 82 GLQDYIEAVNSYKKGLD 98 (538)
Q Consensus 82 ~~~~~~~A~~~~~~al~ 98 (538)
...+..+|+.+|--+-.
T Consensus 339 ~~td~~~Al~Y~~li~~ 355 (613)
T PF04097_consen 339 EITDPREALQYLYLICL 355 (613)
T ss_dssp TTT-HHHHHHHHHGGGG
T ss_pred hccCHHHHHHHHHHHHH
Confidence 56788888888865543
No 424
>PF13041 PPR_2: PPR repeat family
Probab=77.11 E-value=13 Score=22.58 Aligned_cols=27 Identities=30% Similarity=0.363 Sum_probs=13.5
Q ss_pred hHhHHHHHHHHhCCchhHHHHHHHHHh
Q 009278 425 TYSNRAACYTKLGAMPEGLKDADKCIE 451 (538)
Q Consensus 425 ~~~~la~~~~~~~~~~~A~~~~~~al~ 451 (538)
.|..+-..+.+.|++++|.+.|++..+
T Consensus 5 ~yn~li~~~~~~~~~~~a~~l~~~M~~ 31 (50)
T PF13041_consen 5 TYNTLISGYCKAGKFEEALKLFKEMKK 31 (50)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 444444455555555555555555444
No 425
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=76.54 E-value=40 Score=27.55 Aligned_cols=59 Identities=19% Similarity=0.107 Sum_probs=35.9
Q ss_pred HHHHHccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhh----hccCCCChHHHHHHHHhcc
Q 009278 465 AIQFFLKEYDKALETYQEGLKHDPQNQELLDGVRRCVQQINK----AGRGELSPEELKERQAKGM 525 (538)
Q Consensus 465 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~----~~~a~~~~~~~~~~~~~~~ 525 (538)
..+.-..+.+.|.++--+|-+++ ++.+..++.+.+..-.- ..+|+.....+.+..+...
T Consensus 176 ~~~~~~kDMdka~qfa~kACel~--~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~~~e~~ 238 (248)
T KOG4014|consen 176 ELGSLSKDMDKALQFAIKACELD--IPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEIMEELR 238 (248)
T ss_pred hhhhhhHhHHHHHHHHHHHHhcC--ChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHHHHHHH
Confidence 33444577889999988888774 67777788877754332 3334444344444444433
No 426
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=76.27 E-value=19 Score=33.50 Aligned_cols=94 Identities=17% Similarity=0.150 Sum_probs=70.5
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHhccCCc---chHHHHHHHHHHHhcCCHHHHHHHHHHHhccC-------C-CchHH
Q 009278 4 EAKAKGNAAFSSGDYEAAVRHFTEAISLSPD---NHVLYSNRSAAHASLHNYADALADAKKTVELK-------P-DWSKG 72 (538)
Q Consensus 4 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------p-~~~~~ 72 (538)
++...|.-|...|+++.|++.|.++-....+ ....+.++-.+-...|+|.....+..++.+.- + -.+.+
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl 231 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKL 231 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcch
Confidence 5678899999999999999999996554332 34677788888889999999888888876541 0 01234
Q ss_pred HHHHHHHHhhccCHHHHHHHHHhhh
Q 009278 73 YSRLGAAHLGLQDYIEAVNSYKKGL 97 (538)
Q Consensus 73 ~~~la~~~~~~~~~~~A~~~~~~al 97 (538)
...-|.+.+.+++|..|..+|-.+.
T Consensus 232 ~C~agLa~L~lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 232 KCAAGLANLLLKKYKSAAKYFLLAE 256 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 5556667777789999999887664
No 427
>PF13041 PPR_2: PPR repeat family
Probab=76.25 E-value=15 Score=22.35 Aligned_cols=28 Identities=18% Similarity=0.196 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 009278 37 VLYSNRSAAHASLHNYADALADAKKTVE 64 (538)
Q Consensus 37 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 64 (538)
..|..+-..+.+.|++++|.+.|++..+
T Consensus 4 ~~yn~li~~~~~~~~~~~a~~l~~~M~~ 31 (50)
T PF13041_consen 4 VTYNTLISGYCKAGKFEEALKLFKEMKK 31 (50)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3444445555555555555555555543
No 428
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=75.67 E-value=58 Score=28.91 Aligned_cols=143 Identities=11% Similarity=0.102 Sum_probs=86.0
Q ss_pred CchHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC---chhH---hHHHHHHHHhCCchhHHHHHHHHHhcCCCch---
Q 009278 387 KIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKD---PRTY---SNRAACYTKLGAMPEGLKDADKCIELDPTFS--- 457 (538)
Q Consensus 387 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~---~~la~~~~~~~~~~~A~~~~~~al~~~p~~~--- 457 (538)
...+++.++|..|.+.++.+.+.+++.+.+...-.. .+++ ..+|.+|..+.-.++.++..+..++...+..
T Consensus 113 e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrN 192 (412)
T COG5187 113 EGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRN 192 (412)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhh
Confidence 346789999999999999999999988877543221 2333 4466666666666777777777777643311
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHhccCCCCH-HHHHHHHHHHHHhhhhccCCCChHHHHHHHHhccCCchhhhhcc
Q 009278 458 KGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQ-ELLDGVRRCVQQINKAGRGELSPEELKERQAKGMQDPKFRTYSL 535 (538)
Q Consensus 458 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~~~~ 535 (538)
..-...|.......++.+|...+-..+....... ..+....+-..-.|-..--. .+.-.+.+..|++...+.
T Consensus 193 RyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~S~El~sY~~~vrYa~~~Gl~~leR------~diktki~dspevl~vi~ 265 (412)
T COG5187 193 RYKVYKGIFKMMRRNFKEAAILLSDILPTFESSELISYSRAVRYAIFCGLLRLER------RDIKTKILDSPEVLDVIG 265 (412)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHhccccccccccHHHHHHHHHHhhhheeeh------hhhhhhhcCCHHHHHhcc
Confidence 1223346666677889999988888776543322 22333333333333332222 133344555676666553
No 429
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=75.45 E-value=23 Score=32.04 Aligned_cols=95 Identities=17% Similarity=0.082 Sum_probs=66.8
Q ss_pred CHHHHHHHHHHHhccCCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CCCchHHHHHHHHHHhhccCHHHHHHHHH
Q 009278 17 DYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVEL--KPDWSKGYSRLGAAHLGLQDYIEAVNSYK 94 (538)
Q Consensus 17 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~ 94 (538)
+|..-..+|.-.....| +|.+-.+.+.+.....-...++...+-.... -......+-..|..+.++|+.++|...|+
T Consensus 311 DW~~I~aLYdaL~~~ap-SPvV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~ayd 389 (415)
T COG4941 311 DWPAIDALYDALEQAAP-SPVVTLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYD 389 (415)
T ss_pred ChHHHHHHHHHHHHhCC-CCeEeehHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHH
Confidence 44444445554444454 4566667777776666677777777765543 12345567789999999999999999999
Q ss_pred hhhhcCCCcHHHHhhHHH
Q 009278 95 KGLDIDPNNEALKSGLAD 112 (538)
Q Consensus 95 ~al~~~p~~~~~~~~l~~ 112 (538)
+++.+.++..+..+....
T Consensus 390 rAi~La~~~aer~~l~~r 407 (415)
T COG4941 390 RAIALARNAAERAFLRQR 407 (415)
T ss_pred HHHHhcCChHHHHHHHHH
Confidence 999999988776555443
No 430
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=75.10 E-value=11 Score=31.63 Aligned_cols=46 Identities=15% Similarity=0.170 Sum_probs=29.1
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHHccCHHHHHHHHHHHhccCC
Q 009278 442 GLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDP 488 (538)
Q Consensus 442 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 488 (538)
.++..++.+...|+ +.++..++.++...|+.++|.....++..+.|
T Consensus 130 ~~~~a~~~l~~~P~-~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 130 YIEWAERLLRRRPD-PNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 34444555555553 66666666666777777777777777766666
No 431
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=74.69 E-value=12 Score=32.14 Aligned_cols=109 Identities=16% Similarity=0.096 Sum_probs=60.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCch------------hHhHHHHHHHHhCCchhH--HHHHHHHHhc--CCCch--
Q 009278 396 GNEFFKQQKYPEAIQHYTESLRRNPKDPR------------TYSNRAACYTKLGAMPEG--LKDADKCIEL--DPTFS-- 457 (538)
Q Consensus 396 a~~~~~~~~~~~A~~~~~~al~~~~~~~~------------~~~~la~~~~~~~~~~~A--~~~~~~al~~--~p~~~-- 457 (538)
-..++..|+|+.|+.+..-+|+.+-.-|+ -...-+......|..-+. ...+..+... -|+.+
T Consensus 90 mvW~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd~vrA 169 (230)
T PHA02537 90 MVWRFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPDEVRA 169 (230)
T ss_pred eeeeeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCChHHHH
Confidence 34456789999999999999876532221 112223333444542211 1112222111 13333
Q ss_pred HHHHHHHHHHH---------HccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhh
Q 009278 458 KGYTRKGAIQF---------FLKEYDKALETYQEGLKHDPQNQELLDGVRRCVQQIN 505 (538)
Q Consensus 458 ~~~~~l~~~~~---------~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 505 (538)
..+-..|..+. ..++...|+.++++|++++|.- .+...+.++...+.
T Consensus 170 Kl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~-GVK~~i~~l~~~lr 225 (230)
T PHA02537 170 KLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKC-GVKKDIERLERRLK 225 (230)
T ss_pred HHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCC-ChHHHHHHHHHHHh
Confidence 34556677663 4467889999999999999863 44444445444443
No 432
>PRK11619 lytic murein transglycosylase; Provisional
Probab=74.68 E-value=1.1e+02 Score=31.57 Aligned_cols=56 Identities=7% Similarity=-0.030 Sum_probs=42.8
Q ss_pred HhHHHHHHHHhCCchhHHHHHHHHHhcCCCchHHHHHHHHHHHHccCHHHHHHHHHHH
Q 009278 426 YSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEG 483 (538)
Q Consensus 426 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 483 (538)
....+..+...|+...|...+..++.. .++.....++.+....|.++.++....++
T Consensus 410 ~~~ra~~L~~~g~~~~a~~ew~~~~~~--~~~~~~~~la~~A~~~g~~~~ai~~~~~~ 465 (644)
T PRK11619 410 EMARVRELMYWNMDNTARSEWANLVAS--RSKTEQAQLARYAFNQQWWDLSVQATIAG 465 (644)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCHHHHHHHHhhc
Confidence 355677788899999999999888875 33566777888888888888887766544
No 433
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=74.07 E-value=29 Score=35.10 Aligned_cols=189 Identities=14% Similarity=0.127 Sum_probs=106.1
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCCh
Q 009278 283 DISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNP 362 (538)
Q Consensus 283 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~ 362 (538)
.+++..++-..|....+|+.-+...+..-. -|+..... ....+.+..+.+ .+..+..|+-++|+...-.+++.
T Consensus 200 ~~d~V~nlmlSyRDvQdY~amirLVe~Lk~-iP~t~~vv-e~~nv~f~YaFA-LNRRNr~GDRakAL~~~l~lve~---- 272 (1226)
T KOG4279|consen 200 HPDTVSNLMLSYRDVQDYDAMIRLVEDLKR-IPDTLKVV-ETHNVRFHYAFA-LNRRNRPGDRAKALNTVLPLVEK---- 272 (1226)
T ss_pred CHHHHHHHHhhhccccchHHHHHHHHHHHh-Ccchhhhh-ccCceEEEeeeh-hcccCCCccHHHHHHHHHHHHHh----
Confidence 467777888888888999888877766544 34211100 000111111111 11222345577887777777663
Q ss_pred hHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHH---------hcCChHHHHHHHHHHHhcCCCCchhHhHHHHHH
Q 009278 363 DTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFF---------KQQKYPEAIQHYTESLRRNPKDPRTYSNRAACY 433 (538)
Q Consensus 363 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~---------~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~ 433 (538)
..|-.++.+...|.+|- ..+..+.|+++|+++++..|... .-.+++.++
T Consensus 273 ---------------------eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~-sGIN~atLL 330 (1226)
T KOG4279|consen 273 ---------------------EGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEY-SGINLATLL 330 (1226)
T ss_pred ---------------------cCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhh-ccccHHHHH
Confidence 33445566666666653 34556788999999999888533 233455555
Q ss_pred HHhCC-chhHHHHHHHHHhcCC--------CchHHHHHHHHHH---HHccCHHHHHHHHHHHhccCCCCHHHHHHHHHH
Q 009278 434 TKLGA-MPEGLKDADKCIELDP--------TFSKGYTRKGAIQ---FFLKEYDKALETYQEGLKHDPQNQELLDGVRRC 500 (538)
Q Consensus 434 ~~~~~-~~~A~~~~~~al~~~p--------~~~~~~~~l~~~~---~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 500 (538)
...|+ ++...+.-.-.+.++. .....|+..|..+ .-.+++.+|+..-+..+++.|-.......+..+
T Consensus 331 ~aaG~~Fens~Elq~IgmkLn~LlgrKG~leklq~YWdV~~y~~asVLAnd~~kaiqAae~mfKLk~P~WYLkS~meni 409 (1226)
T KOG4279|consen 331 RAAGEHFENSLELQQIGMKLNSLLGRKGALEKLQEYWDVATYFEASVLANDYQKAIQAAEMMFKLKPPVWYLKSTMENI 409 (1226)
T ss_pred HHhhhhccchHHHHHHHHHHHHHhhccchHHHHHHHHhHHHhhhhhhhccCHHHHHHHHHHHhccCCceehHHHHHHHH
Confidence 55553 4444444333333321 1122333333332 235789999999999999988765544444443
No 434
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=73.73 E-value=74 Score=29.26 Aligned_cols=76 Identities=13% Similarity=0.011 Sum_probs=47.4
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCchHHHHHHHHHHHHccCHHHHHH
Q 009278 399 FFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALE 478 (538)
Q Consensus 399 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 478 (538)
+...|+...|..+-.. +++ .+...|+....++...++|++-..+... ...|..|.-...+....|+..+|..
T Consensus 187 li~~~~~k~A~kl~k~-Fkv--~dkrfw~lki~aLa~~~~w~eL~~fa~s-----kKsPIGyepFv~~~~~~~~~~eA~~ 258 (319)
T PF04840_consen 187 LIEMGQEKQAEKLKKE-FKV--PDKRFWWLKIKALAENKDWDELEKFAKS-----KKSPIGYEPFVEACLKYGNKKEASK 258 (319)
T ss_pred HHHCCCHHHHHHHHHH-cCC--cHHHHHHHHHHHHHhcCCHHHHHHHHhC-----CCCCCChHHHHHHHHHCCCHHHHHH
Confidence 3456666666655332 233 2456677777777788887765554321 2345566666677777777778777
Q ss_pred HHHH
Q 009278 479 TYQE 482 (538)
Q Consensus 479 ~~~~ 482 (538)
+..+
T Consensus 259 yI~k 262 (319)
T PF04840_consen 259 YIPK 262 (319)
T ss_pred HHHh
Confidence 7777
No 435
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=73.51 E-value=5 Score=27.19 Aligned_cols=26 Identities=23% Similarity=0.299 Sum_probs=14.5
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHhc
Q 009278 5 AKAKGNAAFSSGDYEAAVRHFTEAIS 30 (538)
Q Consensus 5 ~~~~g~~~~~~g~~~~A~~~~~~al~ 30 (538)
++.+|...-..|+|++|+.+|.++++
T Consensus 9 Lv~~A~~eD~~gny~eA~~lY~~ale 34 (75)
T cd02680 9 LVTQAFDEDEKGNAEEAIELYTEAVE 34 (75)
T ss_pred HHHHHHHhhHhhhHHHHHHHHHHHHH
Confidence 44455555555666666666655554
No 436
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=72.28 E-value=37 Score=26.15 Aligned_cols=55 Identities=16% Similarity=0.215 Sum_probs=0.0
Q ss_pred HHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 009278 258 NAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVE 312 (538)
Q Consensus 258 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 312 (538)
..+..+|+-++--+.+....+.+..++..+..+|.+|.+.|+..++-+.+.++.+
T Consensus 94 d~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 94 DILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp HHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
No 437
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=72.12 E-value=68 Score=28.11 Aligned_cols=95 Identities=20% Similarity=0.103 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHHHH
Q 009278 248 EKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARA 327 (538)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 327 (538)
.........+..+.+.--.++|+..+-+.+..+ +.-..+..|.++.+++ -..|+..+.+.+....+++-....-+.+
T Consensus 167 t~~l~~Ry~amF~LRn~g~EeaI~al~~~l~~~--SalfrhEvAfVfGQl~-s~~ai~~L~k~L~d~~E~pMVRhEaAeA 243 (289)
T KOG0567|consen 167 TKPLFERYRAMFYLRNIGTEEAINALIDGLADD--SALFRHEVAFVFGQLQ-SPAAIPSLIKVLLDETEHPMVRHEAAEA 243 (289)
T ss_pred chhHHHHHhhhhHhhccCcHHHHHHHHHhcccc--hHHHHHHHHHHHhhcc-chhhhHHHHHHHHhhhcchHHHHHHHHH
Confidence 344445556777777766799999998887765 5666677777776665 4578888888888776665555444555
Q ss_pred HHHhHHHHHHhhhcccChhHHHHHHHHHHh
Q 009278 328 LTRKGTALVKMAKCSKDYEPAIETFQKALT 357 (538)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 357 (538)
+...| -++++..+++.+.
T Consensus 244 LGaIa------------~e~~~~vL~e~~~ 261 (289)
T KOG0567|consen 244 LGAIA------------DEDCVEVLKEYLG 261 (289)
T ss_pred HHhhc------------CHHHHHHHHHHcC
Confidence 55555 4777777777665
No 438
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=71.26 E-value=7.4 Score=26.50 Aligned_cols=28 Identities=29% Similarity=0.394 Sum_probs=18.7
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHHHhc
Q 009278 3 DEAKAKGNAAFSSGDYEAAVRHFTEAIS 30 (538)
Q Consensus 3 ~~~~~~g~~~~~~g~~~~A~~~~~~al~ 30 (538)
..++.+|...-..|+|++|+.+|.++++
T Consensus 7 ~~l~~~Av~~D~~g~y~eA~~~Y~~aie 34 (75)
T cd02678 7 IELVKKAIEEDNAGNYEEALRLYQHALE 34 (75)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4556666667777777777777766654
No 439
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=70.65 E-value=50 Score=29.44 Aligned_cols=113 Identities=14% Similarity=0.076 Sum_probs=78.4
Q ss_pred HHHHHhhcCCHHHHHHHHHHHhccCCc--chHHHHHHHHHH---HhcCCH----HHHHHHHHHHhccCCCchHHHHHHHH
Q 009278 8 KGNAAFSSGDYEAAVRHFTEAISLSPD--NHVLYSNRSAAH---ASLHNY----ADALADAKKTVELKPDWSKGYSRLGA 78 (538)
Q Consensus 8 ~g~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~---~~~g~~----~~A~~~~~~al~~~p~~~~~~~~la~ 78 (538)
....+++.|+|++=-..|.+......+ ..+..|..+... ..+... ..-...++.-++..|++..+++.+|.
T Consensus 6 ~ir~LL~~~~f~eLd~~l~~~~~~~~~s~~~e~~Y~~~~~~~~l~D~~~~~~~~~~~~~~LkaWv~a~P~Sy~A~La~g~ 85 (277)
T PF13226_consen 6 DIRELLQARDFAELDALLARLLQAWLQSRDGEQRYFRAWMSSTLFDMDSVVDAWQARLAVLKAWVAACPKSYHAHLAMGM 85 (277)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhhhhccCccchHHHHHhhccccCcchhhhHHHhHHHHHHHHHHHCCCChHHHHHHHH
Confidence 556788999999988888888754332 222223333222 222211 13566677778889999999999998
Q ss_pred HHhhc----------------------cCHHHHHHHHHhhhhcCCCcHHHHhhHHHHHHHHhhc
Q 009278 79 AHLGL----------------------QDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASAS 120 (538)
Q Consensus 79 ~~~~~----------------------~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 120 (538)
.+... .-.+.|...+.+++.++|....+...+..+-...|..
T Consensus 86 ~~~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m~~~s~~fgeP 149 (277)
T PF13226_consen 86 YWVHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGMINISAYFGEP 149 (277)
T ss_pred HHHHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhcCCc
Confidence 88653 1257889999999999999999998888776666543
No 440
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=70.62 E-value=8.5 Score=20.12 Aligned_cols=21 Identities=10% Similarity=0.132 Sum_probs=9.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHH
Q 009278 42 RSAAHASLHNYADALADAKKT 62 (538)
Q Consensus 42 la~~~~~~g~~~~A~~~~~~a 62 (538)
+-.+|.+.|++++|...|++.
T Consensus 6 li~~~~~~~~~~~a~~~~~~M 26 (31)
T PF01535_consen 6 LISGYCKMGQFEEALEVFDEM 26 (31)
T ss_pred HHHHHHccchHHHHHHHHHHH
Confidence 334444444444444444443
No 441
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.03 E-value=1.6e+02 Score=31.41 Aligned_cols=40 Identities=10% Similarity=0.030 Sum_probs=28.5
Q ss_pred HHHHHHHhccCCCchHHHHHHHHHHhhccCHHHHHHHHHhhhhc
Q 009278 56 LADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDI 99 (538)
Q Consensus 56 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 99 (538)
++..+..+...+. +..|+.+|...|+.++|++.+.+...-
T Consensus 494 vee~e~~L~k~~~----y~~Li~LY~~kg~h~~AL~ll~~l~d~ 533 (877)
T KOG2063|consen 494 VEEIETVLKKSKK----YRELIELYATKGMHEKALQLLRDLVDE 533 (877)
T ss_pred hHHHHHHHHhccc----HHHHHHHHHhccchHHHHHHHHHHhcc
Confidence 3444444444433 667888899999999999999888773
No 442
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=69.58 E-value=83 Score=28.09 Aligned_cols=34 Identities=12% Similarity=0.182 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhh
Q 009278 473 YDKALETYQEGLKHDPQNQELLDGVRRCVQQINK 506 (538)
Q Consensus 473 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 506 (538)
.+.|...+.+|+.++|....+...+..+-..+|+
T Consensus 115 ~d~A~~~ll~A~~l~pr~~~A~~~m~~~s~~fge 148 (277)
T PF13226_consen 115 CDQAVAALLKAIELSPRPVAAAIGMINISAYFGE 148 (277)
T ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHHHhhcCC
Confidence 3456666666666666666666666555555443
No 443
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=69.56 E-value=77 Score=30.02 Aligned_cols=112 Identities=14% Similarity=0.088 Sum_probs=69.3
Q ss_pred HHHHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHh
Q 009278 322 KMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFK 401 (538)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~ 401 (538)
..++..+...+.+.+.... |++|+.++-.+-+... .+-.+.++.-.+.+-.-..+.+||+.
T Consensus 160 lmmglg~hekaRa~m~re~----y~eAl~~LleADe~F~---------------~Cd~klLe~VDNyallnLDIVWCYfr 220 (568)
T KOG2561|consen 160 LMMGLGLHEKARAAMEREM----YSEALLVLLEADESFS---------------LCDSKLLELVDNYALLNLDIVWCYFR 220 (568)
T ss_pred HHHHHhHHHHHHHHHHHHH----HHHHHHHHHHhhHHHH---------------hhhHHHHHhhcchhhhhcchhheehh
Confidence 3456777788888888888 8888887765544211 12233344444555555667777777
Q ss_pred cCC---hHH-------HHHHHHHHHh--------c-CCCCc------hhHhHHHHHHHHhCCchhHHHHHHHHHhc
Q 009278 402 QQK---YPE-------AIQHYTESLR--------R-NPKDP------RTYSNRAACYTKLGAMPEGLKDADKCIEL 452 (538)
Q Consensus 402 ~~~---~~~-------A~~~~~~al~--------~-~~~~~------~~~~~la~~~~~~~~~~~A~~~~~~al~~ 452 (538)
.++ .+. |.+.|.++.. + .+..| ..+..-|.+.+.+|+-++|.++++.+...
T Consensus 221 LknitcL~DAe~RL~ra~kgf~~syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~ 296 (568)
T KOG2561|consen 221 LKNITCLPDAEVRLVRARKGFERSYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAK 296 (568)
T ss_pred hcccccCChHHHHHHHHHHhhhhhhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 665 233 3333433321 1 12222 34566789999999999999999988653
No 444
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=69.46 E-value=8.3 Score=26.36 Aligned_cols=25 Identities=36% Similarity=0.474 Sum_probs=13.3
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHh
Q 009278 5 AKAKGNAAFSSGDYEAAVRHFTEAI 29 (538)
Q Consensus 5 ~~~~g~~~~~~g~~~~A~~~~~~al 29 (538)
++.+|...-..|++++|+.+|.+++
T Consensus 11 li~~Av~~d~~g~~~eAl~~Y~~a~ 35 (77)
T smart00745 11 LISKALKADEAGDYEEALELYKKAI 35 (77)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4445555555555555555555444
No 445
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=69.23 E-value=43 Score=24.80 Aligned_cols=56 Identities=20% Similarity=0.248 Sum_probs=40.2
Q ss_pred HHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCC
Q 009278 244 KERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGK 299 (538)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 299 (538)
.............|.+.+..|++..|.+...++-+..+..+-.+..-+..-..+||
T Consensus 53 ~rr~~ka~~al~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~gd 108 (108)
T PF07219_consen 53 RRRRRKAQRALSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQGD 108 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC
Confidence 33455666777788889999999999999999977755555555555666655554
No 446
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=68.76 E-value=70 Score=32.62 Aligned_cols=72 Identities=22% Similarity=0.218 Sum_probs=52.4
Q ss_pred hcCCHHHHHHHHHHHhccC-CCchHHHHHHHHHHhh---------ccCHHHHHHHHHhhhhcCCCcHHHHhhHHHHHHHH
Q 009278 48 SLHNYADALADAKKTVELK-PDWSKGYSRLGAAHLG---------LQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAA 117 (538)
Q Consensus 48 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~---------~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 117 (538)
+-|+-++|+...-.+++.. |-.++.+..-|++|-. .+..+.|+.+|+++++..|.... -..++.++...
T Consensus 255 r~GDRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~s-GIN~atLL~aa 333 (1226)
T KOG4279|consen 255 RPGDRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEYS-GINLATLLRAA 333 (1226)
T ss_pred CCccHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhhc-cccHHHHHHHh
Confidence 3478899999888888765 4456777788888754 35678899999999999997543 34556666665
Q ss_pred hhc
Q 009278 118 SAS 120 (538)
Q Consensus 118 ~~~ 120 (538)
|+.
T Consensus 334 G~~ 336 (1226)
T KOG4279|consen 334 GEH 336 (1226)
T ss_pred hhh
Confidence 553
No 447
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=67.93 E-value=9.1 Score=26.06 Aligned_cols=27 Identities=19% Similarity=0.193 Sum_probs=16.3
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHhc
Q 009278 4 EAKAKGNAAFSSGDYEAAVRHFTEAIS 30 (538)
Q Consensus 4 ~~~~~g~~~~~~g~~~~A~~~~~~al~ 30 (538)
.++.+|...-..|+|++|+.+|.++++
T Consensus 8 ~lv~~Av~~D~~g~y~eA~~lY~~ale 34 (75)
T cd02684 8 ALVVQAVKKDQRGDAAAALSLYCSALQ 34 (75)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 455556666666666666666665554
No 448
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=66.98 E-value=10 Score=25.77 Aligned_cols=27 Identities=26% Similarity=0.407 Sum_probs=16.7
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHhc
Q 009278 4 EAKAKGNAAFSSGDYEAAVRHFTEAIS 30 (538)
Q Consensus 4 ~~~~~g~~~~~~g~~~~A~~~~~~al~ 30 (538)
.+...|...-..|+|++|+.+|..+++
T Consensus 8 ~l~~~Av~~D~~g~~~~Al~~Y~~a~e 34 (75)
T cd02656 8 ELIKQAVKEDEDGNYEEALELYKEALD 34 (75)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345566666666777766666666553
No 449
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=66.71 E-value=78 Score=29.77 Aligned_cols=56 Identities=14% Similarity=0.015 Sum_probs=42.8
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHhccCCc-----chHHHHHHHHH--HHhcCCHHHHHHHHHH
Q 009278 6 KAKGNAAFSSGDYEAAVRHFTEAISLSPD-----NHVLYSNRSAA--HASLHNYADALADAKK 61 (538)
Q Consensus 6 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~la~~--~~~~g~~~~A~~~~~~ 61 (538)
..++..+++.++|..|...|.+++...+. ....+..+..+ ++..-++++|.+.+++
T Consensus 134 ~~~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 134 QGYARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 34677899999999999999999988653 22344444444 4677899999999984
No 450
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=65.88 E-value=1.7e+02 Score=30.41 Aligned_cols=102 Identities=12% Similarity=0.086 Sum_probs=75.9
Q ss_pred CCHHHHHHHHHHHhccCCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHHHHHh---hccCHHHHHHH
Q 009278 16 GDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHL---GLQDYIEAVNS 92 (538)
Q Consensus 16 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~---~~~~~~~A~~~ 92 (538)
|.-++=+..++.-+.+++.+...+..|-.++...|++++-...-.++..+.|.++..|.....-.. ..+.-.++...
T Consensus 93 ~~~~~ei~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~ 172 (881)
T KOG0128|consen 93 GGGNQEIRTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEEL 172 (881)
T ss_pred ccchhHHHHHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHH
Confidence 344555677777788888888999999999999999998888888888888888887765544332 33677888999
Q ss_pred HHhhhhcCCCcHHHHhhHHHHHHHHh
Q 009278 93 YKKGLDIDPNNEALKSGLADAKAAAS 118 (538)
Q Consensus 93 ~~~al~~~p~~~~~~~~l~~~~~~~~ 118 (538)
|++++. +-+++..|...+......+
T Consensus 173 ~ekal~-dy~~v~iw~e~~~y~~~~~ 197 (881)
T KOG0128|consen 173 FEKALG-DYNSVPIWEEVVNYLVGFG 197 (881)
T ss_pred HHHHhc-ccccchHHHHHHHHHHhcc
Confidence 999986 4556666666666555443
No 451
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=65.71 E-value=45 Score=25.16 Aligned_cols=69 Identities=20% Similarity=0.183 Sum_probs=53.1
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhhCCCC---------------HHHHHHHHHHHHHhCCHHHHHHHHHHH----HHc
Q 009278 253 EKEAGNAAYKKKEFEKAIEHYSSALELDDED---------------ISYLTNRAAVYLEMGKYEECIKDCDKA----VER 313 (538)
Q Consensus 253 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~~----~~~ 313 (538)
+..+|...++.+++-.++-.|++|+.+..+- +....++|..+..+|+.+-.+++++-+ +.+
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltL 83 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTL 83 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHh
Confidence 5678899999999999999999998653211 245678999999999999999988754 456
Q ss_pred cccchhhH
Q 009278 314 GRELRSDF 321 (538)
Q Consensus 314 ~~~~~~~~ 321 (538)
-|..+...
T Consensus 84 iPQCp~~~ 91 (140)
T PF10952_consen 84 IPQCPNTE 91 (140)
T ss_pred ccCCCCcc
Confidence 67665443
No 452
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=65.46 E-value=13 Score=20.01 Aligned_cols=25 Identities=20% Similarity=0.256 Sum_probs=12.2
Q ss_pred HhHHHHHHHHhCCchhHHHHHHHHH
Q 009278 426 YSNRAACYTKLGAMPEGLKDADKCI 450 (538)
Q Consensus 426 ~~~la~~~~~~~~~~~A~~~~~~al 450 (538)
|..+-..|.+.|++++|...|.+..
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~ 27 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEML 27 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3344444555555555555555443
No 453
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=64.05 E-value=99 Score=26.96 Aligned_cols=62 Identities=10% Similarity=0.072 Sum_probs=41.0
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHH-HhCCHHHHHHHHHHHHHcc
Q 009278 253 EKEAGNAAYKKKEFEKAIEHYSSALELDDED-ISYLTNRAAVYL-EMGKYEECIKDCDKAVERG 314 (538)
Q Consensus 253 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~-~~~~~~~A~~~~~~~~~~~ 314 (538)
+..++.+....|+|++.+.++++++..+|.- .+=...++.+|- ..|....+...+.......
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~ 67 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKE 67 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhh
Confidence 5677889999999999999999999997763 344445555553 2355555555555554433
No 454
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=63.82 E-value=11 Score=25.70 Aligned_cols=27 Identities=26% Similarity=0.348 Sum_probs=14.0
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHhc
Q 009278 4 EAKAKGNAAFSSGDYEAAVRHFTEAIS 30 (538)
Q Consensus 4 ~~~~~g~~~~~~g~~~~A~~~~~~al~ 30 (538)
.++.+|...-..|+|++|..+|..+++
T Consensus 8 ~l~~~Ave~d~~~~y~eA~~~Y~~~i~ 34 (75)
T cd02677 8 ELIRLALEKEEEGDYEAAFEFYRAGVD 34 (75)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 344455555555555555555555443
No 455
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=63.56 E-value=43 Score=31.58 Aligned_cols=48 Identities=13% Similarity=0.108 Sum_probs=43.1
Q ss_pred cccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 009278 263 KKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKA 310 (538)
Q Consensus 263 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 310 (538)
.+..-+|+-+++.++..+|.+......+..+|...|-...|...|...
T Consensus 196 ~~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L 243 (365)
T PF09797_consen 196 SEYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYESL 243 (365)
T ss_pred HHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhc
Confidence 345678999999999999999999999999999999999999999754
No 456
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=63.46 E-value=18 Score=27.38 Aligned_cols=28 Identities=36% Similarity=0.719 Sum_probs=13.0
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHhccCCc
Q 009278 7 AKGNAAFSSGDYEAAVRHFTEAISLSPD 34 (538)
Q Consensus 7 ~~g~~~~~~g~~~~A~~~~~~al~~~p~ 34 (538)
.+|..+...|++++|...|-+|+...|+
T Consensus 68 ~lGE~L~~~G~~~~aa~hf~nAl~V~~q 95 (121)
T PF02064_consen 68 QLGEQLLAQGDYEEAAEHFYNALKVCPQ 95 (121)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCCC
Confidence 3444444445555555544444444443
No 457
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=62.87 E-value=71 Score=24.86 Aligned_cols=114 Identities=16% Similarity=0.131 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHhHHHHHHHHhCCchhHHHHHHHHH
Q 009278 371 AEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCI 450 (538)
Q Consensus 371 ~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 450 (538)
....+.+++..+..++.++..+..+..+|... +..+.+..+.. .++.. -.-..+.+..+.+-++++...+.+.
T Consensus 23 ~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~-~~~~ll~~l~~----~~~~y-d~~~~~~~c~~~~l~~~~~~l~~k~- 95 (140)
T smart00299 23 LEELIPYLESALKLNSENPALQTKLIELYAKY-DPQKEIERLDN----KSNHY-DIEKVGKLCEKAKLYEEAVELYKKD- 95 (140)
T ss_pred HHHHHHHHHHHHccCccchhHHHHHHHHHHHH-CHHHHHHHHHh----ccccC-CHHHHHHHHHHcCcHHHHHHHHHhh-
Confidence 34444444444446666777777788777754 34555566552 11111 1222444445556666666666543
Q ss_pred hcCCCchHHHHHHHHHHHHccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Q 009278 451 ELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDGVRRCVQ 502 (538)
Q Consensus 451 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 502 (538)
.....+. -.+....++++.|++++.+ +.+++.|..++..+.
T Consensus 96 ---~~~~~Al---~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l 136 (140)
T smart00299 96 ---GNFKDAI---VTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKALL 136 (140)
T ss_pred ---cCHHHHH---HHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHHH
Confidence 1111111 1111223778888888776 346778877775543
No 458
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=62.69 E-value=61 Score=29.22 Aligned_cols=110 Identities=12% Similarity=-0.002 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCChh
Q 009278 284 ISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPD 363 (538)
Q Consensus 284 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 363 (538)
......+|.+|...++|..|...+.-+-................+.++++.|...++ ..+|..+..++--......
T Consensus 103 ~~irl~LAsiYE~Eq~~~~aaq~L~~I~~~tg~~~~d~~~kl~l~iriarlyLe~~d----~veae~~inRaSil~a~~~ 178 (399)
T KOG1497|consen 103 ASIRLHLASIYEKEQNWRDAAQVLVGIPLDTGQKAYDVEQKLLLCIRIARLYLEDDD----KVEAEAYINRASILQAESS 178 (399)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhccCcccchhhhhhHHHHHHHHHHHHHHHhcCc----HHHHHHHHHHHHHhhhccc
Q ss_pred HHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009278 364 TLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLR 417 (538)
Q Consensus 364 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 417 (538)
...-....-...|.++-..++|-+|...|.+...
T Consensus 179 --------------------Ne~Lqie~kvc~ARvlD~krkFlEAAqrYyels~ 212 (399)
T KOG1497|consen 179 --------------------NEQLQIEYKVCYARVLDYKRKFLEAAQRYYELSQ 212 (399)
T ss_pred --------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 459
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=62.34 E-value=27 Score=29.25 Aligned_cols=51 Identities=20% Similarity=0.153 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHhccCCCchHHHHHHHHHHhhccCHHHHHHHHHhhhhcCCCc
Q 009278 52 YADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNN 103 (538)
Q Consensus 52 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 103 (538)
.+..++..++.+...| ++..+..++.++...|+.++|.....++..+.|.+
T Consensus 127 l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~~ 177 (193)
T PF11846_consen 127 LEAYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYPAD 177 (193)
T ss_pred HHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcH
Confidence 3445566677777777 67778888999999999999999999999999843
No 460
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=62.19 E-value=18 Score=34.32 Aligned_cols=51 Identities=25% Similarity=0.303 Sum_probs=37.1
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHHHhccCCcchHHHHHHHHHHHhcCCHH
Q 009278 3 DEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYA 53 (538)
Q Consensus 3 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 53 (538)
+....+|...+.+|+|.=+.+..++++-.+|.+..+....+.++.++|--.
T Consensus 453 drVl~la~ea~~kGdyrW~a~lln~~VfAdp~n~~Ar~L~Ad~lEQLgYqa 503 (655)
T COG2015 453 DRVLELAREAFDKGDYRWAAELLNQAVFADPGNKAARELQADALEQLGYQA 503 (655)
T ss_pred HHHHHHHHHHHhcccchHHHHHHhhHHhcCCccHHHHHHHHhHHHHhhhhh
Confidence 455677777777777777777777777777777777777777777776433
No 461
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=62.13 E-value=26 Score=30.08 Aligned_cols=112 Identities=16% Similarity=0.193 Sum_probs=59.8
Q ss_pred HHHhcccHHHHHHHHHHHHhhC---CCCH---------HHHHHHHHHHHHhCCHHH-H-HHHHHHHHHccccchhhHHHH
Q 009278 259 AAYKKKEFEKAIEHYSSALELD---DEDI---------SYLTNRAAVYLEMGKYEE-C-IKDCDKAVERGRELRSDFKMI 324 (538)
Q Consensus 259 ~~~~~~~~~~A~~~~~~al~~~---p~~~---------~~~~~la~~~~~~~~~~~-A-~~~~~~~~~~~~~~~~~~~~~ 324 (538)
-.+..|+|+.|+++..-+++.+ |+.. +-...-+......|..-+ . ...+..+.. .-+.++. ..
T Consensus 92 W~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~-~~dmpd~--vr 168 (230)
T PHA02537 92 WRFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTT-EWDMPDE--VR 168 (230)
T ss_pred eeeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHh-cCCCChH--HH
Confidence 4568899999999999999875 3321 112223333444444211 1 122222221 1111111 22
Q ss_pred HHHHHHhHHHHHHhh-----hcccChhHHHHHHHHHHhcCCChhHHHhhhhHHH
Q 009278 325 ARALTRKGTALVKMA-----KCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEK 373 (538)
Q Consensus 325 ~~~~~~~~~~~~~~~-----~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (538)
+..+...|..+.... ...++...|+.++++++..++...+-....+++.
T Consensus 169 AKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~GVK~~i~~l~~ 222 (230)
T PHA02537 169 AKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKCGVKKDIERLER 222 (230)
T ss_pred HHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCCChHHHHHHHHH
Confidence 666777777664221 1112377899999999988777655444444433
No 462
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=62.01 E-value=37 Score=25.62 Aligned_cols=28 Identities=25% Similarity=0.409 Sum_probs=21.6
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHhcc
Q 009278 4 EAKAKGNAAFSSGDYEAAVRHFTEAISL 31 (538)
Q Consensus 4 ~~~~~g~~~~~~g~~~~A~~~~~~al~~ 31 (538)
.+...|+..++.+++-.++-.|++|+..
T Consensus 3 ~htllAd~a~~~~~~l~si~hYQqAls~ 30 (140)
T PF10952_consen 3 KHTLLADQAFKEADPLRSILHYQQALSL 30 (140)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHH
Confidence 4566788888888888888888888764
No 463
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=61.69 E-value=62 Score=23.81 Aligned_cols=84 Identities=8% Similarity=-0.156 Sum_probs=47.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCchHHHHHHHHHHHHccCH
Q 009278 394 EKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEY 473 (538)
Q Consensus 394 ~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 473 (538)
.+|.+-.-....++|..+.+-.-........+.......+..+|+|++| +.. ......|+.--.++.+-.+.|--
T Consensus 11 ElAL~atG~HcH~EA~tIa~wL~~~~~~~E~v~lIr~~sLmNrG~Yq~A---Ll~--~~~~~~pdL~p~~AL~a~klGL~ 85 (116)
T PF09477_consen 11 ELALMATGHHCHQEANTIADWLEQEGEMEEVVALIRLSSLMNRGDYQEA---LLL--PQCHCYPDLEPWAALCAWKLGLA 85 (116)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHTT-HHHH---HHH--HTTS--GGGHHHHHHHHHHCT-H
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHH---HHh--cccCCCccHHHHHHHHHHhhccH
Confidence 3444444555677777766554333332333445566678888999888 222 22333455555567777888888
Q ss_pred HHHHHHHHH
Q 009278 474 DKALETYQE 482 (538)
Q Consensus 474 ~~A~~~~~~ 482 (538)
.++...+.+
T Consensus 86 ~~~e~~l~r 94 (116)
T PF09477_consen 86 SALESRLTR 94 (116)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888887774
No 464
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=61.17 E-value=19 Score=27.26 Aligned_cols=37 Identities=30% Similarity=0.373 Sum_probs=25.2
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHhccCCCCHHHHHHH
Q 009278 461 TRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDGV 497 (538)
Q Consensus 461 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 497 (538)
..+|..+...|++++|..+|-+|+...|+-.+++.-+
T Consensus 67 V~lGE~L~~~G~~~~aa~hf~nAl~V~~qP~~LL~i~ 103 (121)
T PF02064_consen 67 VQLGEQLLAQGDYEEAAEHFYNALKVCPQPAELLQIY 103 (121)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTSSSHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 4567777777888888888888888777765554433
No 465
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=60.64 E-value=75 Score=24.38 Aligned_cols=33 Identities=18% Similarity=0.119 Sum_probs=25.7
Q ss_pred cCCCchHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 009278 384 FDPKIADEEREKGNEFFKQQKYPEAIQHYTESL 416 (538)
Q Consensus 384 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 416 (538)
+....+..|...|..+...|++.+|.++|+.+|
T Consensus 94 IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 94 IGTKLALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp TSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 456677888888888888888888888888764
No 466
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=60.41 E-value=29 Score=23.05 Aligned_cols=24 Identities=25% Similarity=0.303 Sum_probs=11.0
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHH
Q 009278 253 EKEAGNAAYKKKEFEKAIEHYSSA 276 (538)
Q Consensus 253 ~~~~~~~~~~~~~~~~A~~~~~~a 276 (538)
+...|...-..|++++|+.+|.++
T Consensus 8 ~~~~Av~~D~~g~~~~A~~~Y~~a 31 (69)
T PF04212_consen 8 LIKKAVEADEAGNYEEALELYKEA 31 (69)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHH
Confidence 333444444445555555444444
No 467
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=59.82 E-value=1.4e+02 Score=27.21 Aligned_cols=31 Identities=13% Similarity=0.067 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHccc
Q 009278 285 SYLTNRAAVYLEMGKYEECIKDCDKAVERGR 315 (538)
Q Consensus 285 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 315 (538)
.+...++.|..++|+..+|++.++...+..|
T Consensus 276 YIKRRLAMCARklGrlrEA~K~~RDL~ke~p 306 (556)
T KOG3807|consen 276 YIKRRLAMCARKLGRLREAVKIMRDLMKEFP 306 (556)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcc
Confidence 3445677788888888888888877766555
No 468
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=58.58 E-value=27 Score=18.59 Aligned_cols=26 Identities=27% Similarity=0.341 Sum_probs=13.6
Q ss_pred HHHHHHhccCCCCHHHHHHHHHHHHH
Q 009278 478 ETYQEGLKHDPQNQELLDGVRRCVQQ 503 (538)
Q Consensus 478 ~~~~~al~~~p~~~~~~~~l~~~~~~ 503 (538)
+.-..++..+|.|..+|.....++..
T Consensus 4 ~~~~~~l~~~pknys~W~yR~~ll~~ 29 (31)
T PF01239_consen 4 EFTKKALEKDPKNYSAWNYRRWLLKQ 29 (31)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCcccccHHHHHHHHHHH
Confidence 34445555555555555555554443
No 469
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=58.40 E-value=49 Score=21.52 Aligned_cols=53 Identities=19% Similarity=0.157 Sum_probs=34.8
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHhccCCcch------HHHHHHHHHHHhcCCHHHHHHH
Q 009278 6 KAKGNAAFSSGDYEAAVRHFTEAISLSPDNH------VLYSNRSAAHASLHNYADALAD 58 (538)
Q Consensus 6 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~~~~A~~~ 58 (538)
+..|..++..|+|=+|-+.++.+-...|.+. -+....|....+.|+...|...
T Consensus 3 ~~~~~~l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 3 LEEGIELFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred HHHHHHHHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 5678888999999999999999887655332 1223334445677777777654
No 470
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=57.93 E-value=28 Score=18.94 Aligned_cols=13 Identities=31% Similarity=0.470 Sum_probs=6.4
Q ss_pred CHHHHHHHHHHHh
Q 009278 17 DYEAAVRHFTEAI 29 (538)
Q Consensus 17 ~~~~A~~~~~~al 29 (538)
+..+|+.+|+++.
T Consensus 20 d~~~A~~~~~~Aa 32 (36)
T smart00671 20 DLEKALEYYKKAA 32 (36)
T ss_pred CHHHHHHHHHHHH
Confidence 4455555554443
No 471
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.77 E-value=53 Score=32.50 Aligned_cols=70 Identities=17% Similarity=0.107 Sum_probs=40.6
Q ss_pred HHHhCCchhHHHHHHHHHhcCCCchHHHHHHHHHHHHccCHHHHHHHHHHHhcc--------CCCCHHHHHHHHHHHHHh
Q 009278 433 YTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKH--------DPQNQELLDGVRRCVQQI 504 (538)
Q Consensus 433 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~ 504 (538)
..+.|+++.|.+...++ ++..-|..||.+....|++..|.++|.++..+ ...+.+.+..++..-.+.
T Consensus 647 al~lgrl~iA~~la~e~-----~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~~~~ 721 (794)
T KOG0276|consen 647 ALKLGRLDIAFDLAVEA-----NSEVKWRQLGDAALSAGELPLASECFLRARDLGSLLLLYTSSGNAEGLAVLASLAKKQ 721 (794)
T ss_pred hhhcCcHHHHHHHHHhh-----cchHHHHHHHHHHhhcccchhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHHHhh
Confidence 34566666666554433 44556777777777777777777777776543 234444444454444444
Q ss_pred hhh
Q 009278 505 NKA 507 (538)
Q Consensus 505 ~~~ 507 (538)
|+.
T Consensus 722 g~~ 724 (794)
T KOG0276|consen 722 GKN 724 (794)
T ss_pred ccc
Confidence 433
No 472
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=57.08 E-value=21 Score=32.67 Aligned_cols=54 Identities=20% Similarity=0.215 Sum_probs=37.2
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHHHhccCC--------cchHHHHHHHHHHHhcCCHHHHH
Q 009278 3 DEAKAKGNAAFSSGDYEAAVRHFTEAISLSP--------DNHVLYSNRSAAHASLHNYADAL 56 (538)
Q Consensus 3 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p--------~~~~~~~~la~~~~~~g~~~~A~ 56 (538)
..++..|+.++..+++++|...|..|..+.. .+..+++..|..++..++....+
T Consensus 42 e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~V 103 (400)
T KOG4563|consen 42 EELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQV 103 (400)
T ss_pred HHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567788888888888888888888876532 23456666666666666655544
No 473
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=56.44 E-value=30 Score=18.91 Aligned_cols=14 Identities=14% Similarity=-0.012 Sum_probs=5.8
Q ss_pred HHHHHHHHHHhccC
Q 009278 53 ADALADAKKTVELK 66 (538)
Q Consensus 53 ~~A~~~~~~al~~~ 66 (538)
+.|...|++.+...
T Consensus 4 dRAR~IyeR~v~~h 17 (32)
T PF02184_consen 4 DRARSIYERFVLVH 17 (32)
T ss_pred HHHHHHHHHHHHhC
Confidence 33444444444443
No 474
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=56.29 E-value=64 Score=30.46 Aligned_cols=45 Identities=16% Similarity=-0.037 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcCChHHHHHHHHHH
Q 009278 371 AEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTES 415 (538)
Q Consensus 371 ~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 415 (538)
+-+|+..++.++..+|.+......+..+|...|-.+.|...|...
T Consensus 199 l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L 243 (365)
T PF09797_consen 199 LLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYESL 243 (365)
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhc
Confidence 344555566666689999999999999999999999999988653
No 475
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=56.17 E-value=90 Score=31.23 Aligned_cols=82 Identities=10% Similarity=-0.022 Sum_probs=66.6
Q ss_pred HhhcCCHHHHHHHHHHHhccCCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHHHHHhhccCHHHHHH
Q 009278 12 AFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVN 91 (538)
Q Consensus 12 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~ 91 (538)
+-++...+.+....+.-+......+...+..+..+-..|..++|-.+|++.+..+|+ .+++..+.-+.+.|-...|..
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 95 (578)
T PRK15490 18 LKQEKKLAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQL 95 (578)
T ss_pred HHHHhhHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHH
Confidence 345566777777777776666667778888888888999999999999999999988 678888888889998888888
Q ss_pred HHHh
Q 009278 92 SYKK 95 (538)
Q Consensus 92 ~~~~ 95 (538)
.+++
T Consensus 96 ~~~~ 99 (578)
T PRK15490 96 ILKK 99 (578)
T ss_pred HHHH
Confidence 8873
No 476
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=55.72 E-value=38 Score=23.14 Aligned_cols=26 Identities=12% Similarity=0.109 Sum_probs=13.0
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHH
Q 009278 252 KEKEAGNAAYKKKEFEKAIEHYSSAL 277 (538)
Q Consensus 252 ~~~~~~~~~~~~~~~~~A~~~~~~al 277 (538)
.+...|.-.-..|+|++|+.+|..++
T Consensus 8 ~~a~~Ave~D~~g~y~eA~~~Y~~ai 33 (76)
T cd02681 8 QFARLAVQRDQEGRYSEAVFYYKEAA 33 (76)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 33444444445555555555555544
No 477
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=55.63 E-value=79 Score=24.22 Aligned_cols=49 Identities=16% Similarity=0.025 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 009278 247 KEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYL 295 (538)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 295 (538)
.+..+.+..+-..++..-+.+.|..+|+++++..|++..++..+....-
T Consensus 73 DeY~EaLRDfq~~~iaKle~e~Ae~vY~el~~~~P~HLpaHla~i~~lD 121 (139)
T PF12583_consen 73 DEYSEALRDFQCSWIAKLEPENAEQVYEELLEAHPDHLPAHLAMIQNLD 121 (139)
T ss_dssp HHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHH-TT-THHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHCcchHHHHHHHHHccC
Confidence 4556667777777788888899999999999999998888776655443
No 478
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=54.78 E-value=21 Score=24.56 Aligned_cols=17 Identities=24% Similarity=0.470 Sum_probs=9.3
Q ss_pred CCHHHHHHHHHHHhccC
Q 009278 16 GDYEAAVRHFTEAISLS 32 (538)
Q Consensus 16 g~~~~A~~~~~~al~~~ 32 (538)
+-|+.|....++++..+
T Consensus 3 ~~~~~A~~~I~kaL~~d 19 (79)
T cd02679 3 GYYKQAFEEISKALRAD 19 (79)
T ss_pred hHHHHHHHHHHHHhhhh
Confidence 34555666655555544
No 479
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=54.34 E-value=33 Score=18.29 Aligned_cols=27 Identities=11% Similarity=0.089 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 009278 286 YLTNRAAVYLEMGKYEECIKDCDKAVE 312 (538)
Q Consensus 286 ~~~~la~~~~~~~~~~~A~~~~~~~~~ 312 (538)
.+..+..++.+.|+++.|..+++...+
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344555666667777777666666554
No 480
>PF04010 DUF357: Protein of unknown function (DUF357); InterPro: IPR023140 This domain is found in a family of proteins, which have no known function.; PDB: 2OO2_A 2PMR_A.
Probab=52.19 E-value=19 Score=24.48 Aligned_cols=26 Identities=31% Similarity=0.497 Sum_probs=18.0
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHH
Q 009278 1 MADEAKAKGNAAFSSGDYEAAVRHFT 26 (538)
Q Consensus 1 ~a~~~~~~g~~~~~~g~~~~A~~~~~ 26 (538)
||..|+.-|..++..|++..|+..+.
T Consensus 34 mA~~Y~~D~~~fl~~gD~v~Ala~~s 59 (75)
T PF04010_consen 34 MAESYLEDGKYFLEKGDYVNALACFS 59 (75)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 46677777777777777777777654
No 481
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=51.71 E-value=25 Score=32.70 Aligned_cols=46 Identities=26% Similarity=0.264 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHhccCCCchHHHHHHHHHHhhccC------------HHHHHHHHHhhhhc
Q 009278 52 YADALADAKKTVELKPDWSKGYSRLGAAHLGLQD------------YIEAVNSYKKGLDI 99 (538)
Q Consensus 52 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~------------~~~A~~~~~~al~~ 99 (538)
...|++++++|.. .+.|..|..+|.++..+|+ |.+|..++.+|-..
T Consensus 334 ~~~Al~yL~kA~d--~ddPetWv~vAEa~I~LGNL~d~eS~eQe~~Y~eAE~iL~kAN~a 391 (404)
T PF12753_consen 334 IKKALEYLKKAQD--EDDPETWVDVAEAMIDLGNLYDNESKEQEKAYKEAEKILKKANKA 391 (404)
T ss_dssp HHHHHHHHHHHHH--S--TTHHHHHHHHHHHHHHH-SSHHH-HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhc--cCChhHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHHhhc
Confidence 5566666666654 3455566666666655554 56677777776543
No 482
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=51.49 E-value=55 Score=24.98 Aligned_cols=39 Identities=10% Similarity=-0.049 Sum_probs=25.0
Q ss_pred HHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHHHHHhh
Q 009278 44 AAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLG 82 (538)
Q Consensus 44 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 82 (538)
..++..-+.+.|..+|+.++..+|++..++..+....-.
T Consensus 84 ~~~iaKle~e~Ae~vY~el~~~~P~HLpaHla~i~~lDS 122 (139)
T PF12583_consen 84 CSWIAKLEPENAEQVYEELLEAHPDHLPAHLAMIQNLDS 122 (139)
T ss_dssp HHHHTTS-HHHHHHHHHHHHHH-TT-THHHHHHHHHHHH
T ss_pred HHHHHhhCHHHHHHHHHHHHHHCcchHHHHHHHHHccCc
Confidence 344555566778888888888888888777776665543
No 483
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=51.49 E-value=2.5e+02 Score=27.90 Aligned_cols=45 Identities=24% Similarity=0.338 Sum_probs=24.1
Q ss_pred hhHHHHHHHHHhc-----CCCchHHHHHHHHHHHHccCHHHHHHHHHHHh
Q 009278 440 PEGLKDADKCIEL-----DPTFSKGYTRKGAIQFFLKEYDKALETYQEGL 484 (538)
Q Consensus 440 ~~A~~~~~~al~~-----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 484 (538)
..++.+|.+++.. +..+..-|..+|-.+++.+++.+|+..+-.+-
T Consensus 296 ~~~~~l~~~AI~sa~~~Y~n~HvYPYty~gg~~yR~~~~~eA~~~Wa~aa 345 (618)
T PF05053_consen 296 PTPLELFNEAISSARTYYNNHHVYPYTYLGGYYYRHKRYREALRSWAEAA 345 (618)
T ss_dssp --HHHHHHHHHHHHHHHCTT--SHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhcCCccccceehhhHHHHHHHHHHHHHHHHHHH
Confidence 3445555555543 22334455666777777777777777776653
No 484
>COG1849 Uncharacterized protein conserved in archaea [Function unknown]
Probab=50.30 E-value=23 Score=24.81 Aligned_cols=26 Identities=23% Similarity=0.336 Sum_probs=18.2
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHH
Q 009278 1 MADEAKAKGNAAFSSGDYEAAVRHFT 26 (538)
Q Consensus 1 ~a~~~~~~g~~~~~~g~~~~A~~~~~ 26 (538)
||+.|+.-|..++..|++-.|...+.
T Consensus 40 ma~~Y~~Dakyf~ekGD~vtAfa~~s 65 (90)
T COG1849 40 MAESYFEDAKYFLEKGDYVTAFAALS 65 (90)
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 46677777777777777777776654
No 485
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=50.15 E-value=2.3e+02 Score=26.82 Aligned_cols=19 Identities=21% Similarity=0.279 Sum_probs=13.7
Q ss_pred HhcCChHHHHHHHHHHHhc
Q 009278 400 FKQQKYPEAIQHYTESLRR 418 (538)
Q Consensus 400 ~~~~~~~~A~~~~~~al~~ 418 (538)
...|+|+.|+..+-+++++
T Consensus 257 ~~~~ry~da~~r~yR~~e~ 275 (380)
T TIGR02710 257 ATQGRYDDAAARLYRALEL 275 (380)
T ss_pred HHccCHHHHHHHHHHHHHH
Confidence 4678888888777666653
No 486
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=49.98 E-value=3.9e+02 Score=29.46 Aligned_cols=157 Identities=17% Similarity=0.132 Sum_probs=75.3
Q ss_pred hcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHHHHHHHhHHHHHHhhhc
Q 009278 262 KKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKC 341 (538)
Q Consensus 262 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (538)
..++|++|+..+.++= +... -..-..-.+.|.|.+|+.+|.--. ... -.++...+..+.....
T Consensus 892 ~L~ry~~AL~hLs~~~---~~~~---~e~~n~I~kh~Ly~~aL~ly~~~~-------e~~---k~i~~~ya~hL~~~~~- 954 (1265)
T KOG1920|consen 892 YLKRYEDALSHLSECG---ETYF---PECKNYIKKHGLYDEALALYKPDS-------EKQ---KVIYEAYADHLREELM- 954 (1265)
T ss_pred HHHHHHHHHHHHHHcC---cccc---HHHHHHHHhcccchhhhheeccCH-------HHH---HHHHHHHHHHHHHhcc-
Confidence 4567777777766542 2111 111122234455555555443222 222 2233333444444444
Q ss_pred ccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHH---HHHHHHHHhcCChHHHHHHHHHHHhc
Q 009278 342 SKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEE---REKGNEFFKQQKYPEAIQHYTESLRR 418 (538)
Q Consensus 342 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~la~~~~~~~~~~~A~~~~~~al~~ 418 (538)
+++|.-.|+++-+......++...+++.+++....+ +.+...... ..++.-+...+++-+|-++....+..
T Consensus 955 ---~~~Aal~Ye~~GklekAl~a~~~~~dWr~~l~~a~q---l~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd 1028 (1265)
T KOG1920|consen 955 ---SDEAALMYERCGKLEKALKAYKECGDWREALSLAAQ---LSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLSD 1028 (1265)
T ss_pred ---ccHHHHHHHHhccHHHHHHHHHHhccHHHHHHHHHh---hcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC
Confidence 666666665554443333444555556666555544 233333333 55666677778887777777665532
Q ss_pred CCCCchhHhHHHHHHHHhCCchhHHHHHHH
Q 009278 419 NPKDPRTYSNRAACYTKLGAMPEGLKDADK 448 (538)
Q Consensus 419 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 448 (538)
|... -..+.+...|++|+.....
T Consensus 1029 -~~~a------v~ll~ka~~~~eAlrva~~ 1051 (1265)
T KOG1920|consen 1029 -PEEA------VALLCKAKEWEEALRVASK 1051 (1265)
T ss_pred -HHHH------HHHHhhHhHHHHHHHHHHh
Confidence 2111 1223344455666555443
No 487
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=49.90 E-value=1.9e+02 Score=25.87 Aligned_cols=64 Identities=14% Similarity=0.132 Sum_probs=40.7
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhc
Q 009278 290 RAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTE 358 (538)
Q Consensus 290 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 358 (538)
.+..-.....-++-++.+++.++....+.. -...++++.++|..|.+.++ .+.+.+++.+.+..
T Consensus 81 ~~~~n~l~kkneeki~Elde~i~~~eedng-E~e~~ea~~n~aeyY~qi~D----~~ng~~~~~~~~~~ 144 (412)
T COG5187 81 RGRMNTLLKKNEEKIEELDERIREKEEDNG-ETEGSEADRNIAEYYCQIMD----IQNGFEWMRRLMRD 144 (412)
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHhhccc-chHHHHHHHHHHHHHHHHhh----hhhHHHHHHHHHHH
Confidence 344444445556667777665554333221 22237888999999999888 88888888777663
No 488
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=49.88 E-value=35 Score=31.78 Aligned_cols=56 Identities=20% Similarity=0.219 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHccccchhhHHHHHHHHHHhHHHHHHhhh-cccChhHHHHHHHHHHh
Q 009278 300 YEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAK-CSKDYEPAIETFQKALT 357 (538)
Q Consensus 300 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~ 357 (538)
...|+.+++++.. .+.|..|..++.++..+|+++..-.. ..+-|.+|...+.+|-.
T Consensus 334 ~~~Al~yL~kA~d--~ddPetWv~vAEa~I~LGNL~d~eS~eQe~~Y~eAE~iL~kAN~ 390 (404)
T PF12753_consen 334 IKKALEYLKKAQD--EDDPETWVDVAEAMIDLGNLYDNESKEQEKAYKEAEKILKKANK 390 (404)
T ss_dssp HHHHHHHHHHHHH--S--TTHHHHHHHHHHHHHHH-SSHHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhc--cCChhHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHHhh
Confidence 4567777777765 55688999999999999998743322 22237777777777655
No 489
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=47.69 E-value=2.4e+02 Score=28.39 Aligned_cols=75 Identities=7% Similarity=-0.015 Sum_probs=36.4
Q ss_pred hHHHHHHHHHHHhcCCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCchHHHHHHHHHHHHccCHHHHHHHHH
Q 009278 405 YPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQ 481 (538)
Q Consensus 405 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 481 (538)
.+.+....+.-+.-...+....+..+..+...+..+.|-.+|++.+..+|+ ..++..+.-+.+.|-...|...++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 98 (578)
T PRK15490 24 LAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQLILK 98 (578)
T ss_pred HHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHHHHH
Confidence 344443433333323333334444445555555555555555555555555 344445555555555555555544
No 490
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=47.39 E-value=40 Score=18.78 Aligned_cols=12 Identities=25% Similarity=0.280 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHh
Q 009278 52 YADALADAKKTV 63 (538)
Q Consensus 52 ~~~A~~~~~~al 63 (538)
+++|+.+|+++.
T Consensus 24 ~~~A~~~~~~Aa 35 (39)
T PF08238_consen 24 YEKAFKWYEKAA 35 (39)
T ss_dssp HHHHHHHHHHHH
T ss_pred ccchHHHHHHHH
Confidence 444455544443
No 491
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=47.07 E-value=2.3e+02 Score=26.05 Aligned_cols=179 Identities=9% Similarity=0.082 Sum_probs=0.0
Q ss_pred HHHHHHHHhccCCcchHHH---HHHHHHHHhcCCHHHHHHHHHHHhccCC------------------------------
Q 009278 21 AVRHFTEAISLSPDNHVLY---SNRSAAHASLHNYADALADAKKTVELKP------------------------------ 67 (538)
Q Consensus 21 A~~~~~~al~~~p~~~~~~---~~la~~~~~~g~~~~A~~~~~~al~~~p------------------------------ 67 (538)
+-..|+++.+.-|+..... ..-|.+++..++|.+....+..+-....
T Consensus 40 ~~~~y~Q~~q~~kk~~~~il~~L~~Gl~a~~~~dya~S~~~ldAae~~~KqqqD~~~~S~~~A~~vGst~vNDNi~~Y~g 119 (449)
T COG3014 40 PKKAYEQSKQFTKKKKNALLWDLQNGLSALYARDYATSLGVLDAAEQRFKQQQDTQSASTRGAGYVGATMINDNVRAYGG 119 (449)
T ss_pred chhHHHHHHHhhhhhhHHHHHhhhhhHHHHHhhhHHHhhhHHHHHHHHHhhhhhhheeccccccchhhhhhccchhhcCc
Q ss_pred ---CchHHHHHHHHHHhhccCHHHHHHHHHhhhhcCCCcHHHHhhHHHHHHHHhhcccCCCCCCCCcccccccCCchhhc
Q 009278 68 ---DWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAK 144 (538)
Q Consensus 68 ---~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (538)
.-....+.+|.-|+..++++.|+-.|.++......-.+.+
T Consensus 120 ~~YE~~~~n~YkaLNYm~~nD~~~ArVEfnRan~rQ~~AKe~~------------------------------------- 162 (449)
T COG3014 120 NIYEGVLINYYKALNYMLLNDSAKARVEFNRANERQRRAKEFY------------------------------------- 162 (449)
T ss_pred hhHHHHHHHHHHHhhHHHhcchhhhHHHHHHHHHHHHHHHHHH-------------------------------------
Q ss_pred ccCCCCCCCcccHHHHHHHHHhhhcCCCchhhhhchHHHHHHHHHHHhhhcCCCCCCCccccccccCCCCCCCccccccC
Q 009278 145 LTADPTTRSYLDQDDFRNMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRK 224 (538)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (538)
.+++....+.+.....++..--...+..+.+..-....
T Consensus 163 ------------~~ei~ka~~e~ds~k~~~N~~~~~ae~s~~i~n~Y~ny------------------------------ 200 (449)
T COG3014 163 ------------YEEVQKAIKEIDSSKHNINMERSRAEVSEILNNTYSNY------------------------------ 200 (449)
T ss_pred ------------HHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHH------------------------------
Q ss_pred CCCCCCCCCccccHHHHHHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 009278 225 PESEPEPEPMELTEEEKEAKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRA 291 (538)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 291 (538)
...-....+-..+-+-+..|..+.-.+++.++...+.++.-+.|+.....-..+
T Consensus 201 -------------~~~yea~~~l~npYv~Yl~~lf~a~n~dv~kg~~~~~e~~gi~qd~~~~~~qY~ 254 (449)
T COG3014 201 -------------LDKYEAYQGLLNPYVSYLSGLFYALNGDVNKGLGYLNEAYGISQDQSPFVAQYL 254 (449)
T ss_pred -------------HHHHHhhcccchHHHHHHHHHhcccCccHhHHHHHHHHHhccCchhhHHHHHhc
No 492
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=45.71 E-value=4.6e+02 Score=29.01 Aligned_cols=55 Identities=11% Similarity=0.002 Sum_probs=26.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHh----------cCCCCchhH---hHHHHHHHHhCCchhHHHHHHHHH
Q 009278 396 GNEFFKQQKYPEAIQHYTESLR----------RNPKDPRTY---SNRAACYTKLGAMPEGLKDADKCI 450 (538)
Q Consensus 396 a~~~~~~~~~~~A~~~~~~al~----------~~~~~~~~~---~~la~~~~~~~~~~~A~~~~~~al 450 (538)
|..|...|+.++|+..|+.+.. +.+.-.... ..|+.-+...+++-+|-+.....+
T Consensus 959 al~Ye~~GklekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 959 ALMYERCGKLEKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred HHHHHHhccHHHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHh
Confidence 4555566666666666654421 122111222 334444555566655555555444
No 493
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=45.68 E-value=1.7e+02 Score=24.16 Aligned_cols=42 Identities=5% Similarity=0.048 Sum_probs=29.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCchhHhHHHHHHHHhC
Q 009278 395 KGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLG 437 (538)
Q Consensus 395 la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~ 437 (538)
...++++.|.+++|.+.+++... +|++......|..+-...+
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II~~Kd 158 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMIIREKD 158 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHHHccc
Confidence 45678899999999999999888 7766655555554443333
No 494
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=44.13 E-value=77 Score=30.29 Aligned_cols=102 Identities=16% Similarity=0.230 Sum_probs=55.4
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHhccCCc-------ch-HHH--------HHHHHHHH-hcC-----CHHHHHHHHHHH
Q 009278 5 AKAKGNAAFSSGDYEAAVRHFTEAISLSPD-------NH-VLY--------SNRSAAHA-SLH-----NYADALADAKKT 62 (538)
Q Consensus 5 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-------~~-~~~--------~~la~~~~-~~g-----~~~~A~~~~~~a 62 (538)
....|..++..|+|.+|+..|+.+|..-|- .. ++. |.+|.... ... ..++....++-+
T Consensus 207 ~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l~vv~~~~E~~e~~eli~icrEYilgl~iEl~Rr~l~~~~~~~~kR~lELA 286 (422)
T PF06957_consen 207 RLKEGYKLFTAGKFEEAIEIFRSILHSIPLLVVESREEEDEAKELIEICREYILGLSIELERRELPKDPVEDQKRNLELA 286 (422)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHC--BSSCHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-TTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHH
Confidence 456899999999999999999999875321 11 111 22222111 111 112221222211
Q ss_pred -----hccCCCchH-HHHHHHHHHhhccCHHHHHHHHHhhhhcCCCcHHH
Q 009278 63 -----VELKPDWSK-GYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNEAL 106 (538)
Q Consensus 63 -----l~~~p~~~~-~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 106 (538)
.++.|.+.. ++..--...++.++|..|...-++.+++.|....+
T Consensus 287 AYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~~a 336 (422)
T PF06957_consen 287 AYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPEVA 336 (422)
T ss_dssp HHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCHHH
T ss_pred HHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHHHH
Confidence 233444332 22222334567899999999999999999987543
No 495
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=43.88 E-value=2.3e+02 Score=25.06 Aligned_cols=203 Identities=13% Similarity=0.067 Sum_probs=119.9
Q ss_pred HHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHHHHHHHhHHHHHHh
Q 009278 259 AAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKM 338 (538)
Q Consensus 259 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (538)
.+..+-....|+..+...+......+.+.+..|.++-..| ......++++.. .+|.....- .....+..+-+..
T Consensus 58 y~LgQ~~~~~Av~~l~~vl~desq~pmvRhEAaealga~~-~~~~~~~l~k~~-~dp~~~v~E----Tc~lAi~rle~~~ 131 (289)
T KOG0567|consen 58 YVLGQMQDEDAVPVLVEVLLDESQEPMVRHEAAEALGAIG-DPESLEILTKYI-KDPCKEVRE----TCELAIKRLEWKD 131 (289)
T ss_pred hhhhhhccchhhHHHHHHhcccccchHHHHHHHHHHHhhc-chhhHHHHHHHh-cCCccccch----HHHHHHHHHHHhh
Confidence 3444555678999999999888888899999999999999 777888888888 555432111 1111111111111
Q ss_pred hhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 009278 339 AKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRR 418 (538)
Q Consensus 339 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 418 (538)
+- ..+..-....+.+|.+. ...+.+.+....+ ++++.+......+..+.+.-.-++|+..+-..+..
T Consensus 132 ~~------~~~~~~~p~~SvdPa~p--~~~ssv~~lr~~l-----ld~t~~l~~Ry~amF~LRn~g~EeaI~al~~~l~~ 198 (289)
T KOG0567|consen 132 II------DKIANSSPYISVDPAPP--ANLSSVHELRAEL-----LDETKPLFERYRAMFYLRNIGTEEAINALIDGLAD 198 (289)
T ss_pred cc------ccccccCccccCCCCCc--cccccHHHHHHHH-----HhcchhHHHHHhhhhHhhccCcHHHHHHHHHhccc
Confidence 00 00000011112233322 1111121111111 34555555566666666666668899888777665
Q ss_pred CCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCchHHHHHHHHHHHHccCHHHHHHHHHHHh
Q 009278 419 NPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGL 484 (538)
Q Consensus 419 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 484 (538)
+ ++-.....|.++-+++ -..|+..+.+.+....+++.+...-+.++-..++ +++++.+++.+
T Consensus 199 ~--SalfrhEvAfVfGQl~-s~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~-e~~~~vL~e~~ 260 (289)
T KOG0567|consen 199 D--SALFRHEVAFVFGQLQ-SPAAIPSLIKVLLDETEHPMVRHEAAEALGAIAD-EDCVEVLKEYL 260 (289)
T ss_pred c--hHHHHHHHHHHHhhcc-chhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC-HHHHHHHHHHc
Confidence 4 4444455555554444 4678999999998888888888887887777776 45666666654
No 496
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.65 E-value=1.2e+02 Score=21.88 Aligned_cols=38 Identities=8% Similarity=0.053 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHhccCCCCHHHH
Q 009278 457 SKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELL 494 (538)
Q Consensus 457 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 494 (538)
|-.+..+|.+|...|+.+.|..-|+.--.+.|++....
T Consensus 72 PG~HAhLGlLys~~G~~e~a~~eFetEKalFPES~~fm 109 (121)
T COG4259 72 PGYHAHLGLLYSNSGKDEQAVREFETEKALFPESGVFM 109 (121)
T ss_pred CcHHHHHHHHHhhcCChHHHHHHHHHhhhhCccchhHH
Confidence 44556666677777777777776666666666654443
No 497
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=43.51 E-value=1.7e+02 Score=23.28 Aligned_cols=46 Identities=17% Similarity=0.157 Sum_probs=32.0
Q ss_pred cchhhHHHHHHHHHHhHHHHHHhh-hcccChhHHHHHHHHHHhcCCChhHH
Q 009278 316 ELRSDFKMIARALTRKGTALVKMA-KCSKDYEPAIETFQKALTEHRNPDTL 365 (538)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~ 365 (538)
.+.........--..+|..+...+ + .+++..+|-+++...|.+..+
T Consensus 81 ~d~~e~E~~Fl~eV~~GE~L~~~g~~----~~ega~hf~nAl~Vc~qP~~L 127 (148)
T TIGR00985 81 TDPSEKEAFFLQEVQLGEELMAQGTN----VDEGAVHFYNALKVYPQPQQL 127 (148)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhCCCc----hHHHHHHHHHHHHhCCCHHHH
Confidence 344444333444556777777777 6 999999999999988876533
No 498
>PF13934 ELYS: Nuclear pore complex assembly
Probab=43.26 E-value=2.2e+02 Score=24.65 Aligned_cols=85 Identities=19% Similarity=0.057 Sum_probs=42.9
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHhccCCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHHHHHhhccC
Q 009278 6 KAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQD 85 (538)
Q Consensus 6 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 85 (538)
+.+|..++..++|++|+..+... ...| +....+..++...|+...|+.+++. ..-.....++...+..+ ...+.
T Consensus 82 ~~~g~W~LD~~~~~~A~~~L~~p-s~~~---~~~~~Il~~L~~~~~~~lAL~y~~~-~~p~l~s~~~~~~~~~~-La~~~ 155 (226)
T PF13934_consen 82 FIQGFWLLDHGDFEEALELLSHP-SLIP---WFPDKILQALLRRGDPKLALRYLRA-VGPPLSSPEALTLYFVA-LANGL 155 (226)
T ss_pred HHHHHHHhChHhHHHHHHHhCCC-CCCc---ccHHHHHHHHHHCCChhHHHHHHHh-cCCCCCCHHHHHHHHHH-HHcCC
Confidence 44566666667777777666332 1112 2222344455556666666666654 23333344433333333 45566
Q ss_pred HHHHHHHHHhh
Q 009278 86 YIEAVNSYKKG 96 (538)
Q Consensus 86 ~~~A~~~~~~a 96 (538)
..+|..+-+..
T Consensus 156 v~EAf~~~R~~ 166 (226)
T PF13934_consen 156 VTEAFSFQRSY 166 (226)
T ss_pred HHHHHHHHHhC
Confidence 66666555443
No 499
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=42.42 E-value=8.3 Score=38.36 Aligned_cols=169 Identities=12% Similarity=-0.011 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHHHh--ccCCc-chHHHHHHHHHHHhcCCHHHHHHHHH--HHhccCCCc-hHHHHH
Q 009278 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAI--SLSPD-NHVLYSNRSAAHASLHNYADALADAK--KTVELKPDW-SKGYSR 75 (538)
Q Consensus 2 a~~~~~~g~~~~~~g~~~~A~~~~~~al--~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~--~al~~~p~~-~~~~~~ 75 (538)
.+.++.-+..+++.|++..|...+.+.- .+.|. ........|.+....|+++.|+..+. ....+.+.. ...+..
T Consensus 24 ~~~~L~Aa~a~l~~g~~~~A~~ll~~l~~~~L~~~q~~~~~Ll~A~lal~~~~~~~Al~~L~~~~~~~l~~~~~~~~~~l 103 (536)
T PF04348_consen 24 AQLLLLAARALLQEGDWAQAQALLNQLDPQQLSPSQQARYQLLRARLALAQGDPEQALSLLNAQDLWQLPPEQQARYHQL 103 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHhcCCHHHHHHHhccCCcccCCHHHHHHHHHH
Q ss_pred HHHHHhhccCHHHHHHHHHhhhhcCCCcHHHHhhHHHHHHHHhhcccCCCCCCCCcccccccCCchhhcccCCCCCCCcc
Q 009278 76 LGAAHLGLQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYL 155 (538)
Q Consensus 76 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (538)
++.++...|++-+|...+-..-.+-++..........+...+.......
T Consensus 104 ~A~a~~~~~~~l~Aa~~~i~l~~lL~d~~~~~~N~~~iW~~L~~l~~~~------------------------------- 152 (536)
T PF04348_consen 104 RAQAYEQQGDPLAAARERIALDPLLPDPQERQENQDQIWQALSQLPPEQ------------------------------- 152 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHhcCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHHcCCHHH-------------------------------
Q ss_pred cHHHHHHHHHhhhcCCCchhhhhchHHHHHHHHHHHhhhcCCCCCCCccccccccCCCCCCCccccccCCCCCCCCCCcc
Q 009278 156 DQDDFRNMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPME 235 (538)
Q Consensus 156 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (538)
T Consensus 153 -------------------------------------------------------------------------------- 152 (536)
T PF04348_consen 153 -------------------------------------------------------------------------------- 152 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Q ss_pred ccHHHHHHHHhHHHHHHHHHHHHHHHh-cccHHHHHHHHHHHHhhCCCCH
Q 009278 236 LTEEEKEAKERKEKALKEKEAGNAAYK-KKEFEKAIEHYSSALELDDEDI 284 (538)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~A~~~~~~al~~~p~~~ 284 (538)
+.............|..++.++.. ..+...-...+......+|+++
T Consensus 153 ---L~~~~~~~~~~l~GWl~La~i~~~~~~~p~~l~~al~~Wq~~yP~HP 199 (536)
T PF04348_consen 153 ---LQQLRRASEPDLQGWLELALIYRQYQQDPAQLKQALNQWQQRYPNHP 199 (536)
T ss_dssp --------------------------------------------------
T ss_pred ---HHhhhcCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCcCCc
No 500
>PF15469 Sec5: Exocyst complex component Sec5
Probab=42.07 E-value=1.5e+02 Score=24.44 Aligned_cols=84 Identities=15% Similarity=0.101 Sum_probs=0.0
Q ss_pred HHHhhcCCHHHHHHHHHHHhccCCcc--hHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHHHHHhhccCHH
Q 009278 10 NAAFSSGDYEAAVRHFTEAISLSPDN--HVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYI 87 (538)
Q Consensus 10 ~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~ 87 (538)
..++..|+|+.++..|.++....... ....+...+.-...---+-....+++....+ ...+
T Consensus 94 ~~~i~~~dy~~~i~dY~kak~l~~~~~~~~~vf~~v~~eve~ii~~~r~~l~~~L~~~~-----------------~s~~ 156 (182)
T PF15469_consen 94 RECIKKGDYDQAINDYKKAKSLFEKYKQQVPVFQKVWSEVEKIIEEFREKLWEKLLSPP-----------------SSQE 156 (182)
T ss_pred HHHHHcCcHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-----------------CCHH
Q ss_pred HHHHHHHhhhhcCCCcHHHHhhH
Q 009278 88 EAVNSYKKGLDIDPNNEALKSGL 110 (538)
Q Consensus 88 ~A~~~~~~al~~~p~~~~~~~~l 110 (538)
+........++++|+...+|..+
T Consensus 157 ~~~~~i~~Ll~L~~~~dPi~~~l 179 (182)
T PF15469_consen 157 EFLKLIRKLLELNVEEDPIWYWL 179 (182)
T ss_pred HHHHHHHHHHhCCCCCCHHHHHH
Done!