Query 009278
Match_columns 538
No_of_seqs 944 out of 1663
Neff 11.8
Searched_HMMs 29240
Date Mon Mar 25 22:53:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009278.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009278hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w3b_A UDP-N-acetylglucosamine 100.0 9.6E-45 3.3E-49 344.9 43.7 378 6-506 3-388 (388)
2 1w3b_A UDP-N-acetylglucosamine 100.0 1.2E-40 4E-45 316.7 38.6 365 41-535 4-377 (388)
3 3ieg_A DNAJ homolog subfamily 100.0 4.5E-39 1.5E-43 302.6 44.0 336 2-508 3-357 (359)
4 2gw1_A Mitochondrial precursor 100.0 2.4E-39 8.1E-44 320.0 41.1 445 2-500 6-492 (514)
5 2xpi_A Anaphase-promoting comp 100.0 1.7E-38 5.8E-43 319.9 43.9 433 3-513 85-572 (597)
6 2y4t_A DNAJ homolog subfamily 100.0 4.4E-38 1.5E-42 305.5 42.3 334 2-506 26-378 (450)
7 3fp2_A TPR repeat-containing p 100.0 2.9E-39 1E-43 321.2 34.0 415 2-498 25-503 (537)
8 2xpi_A Anaphase-promoting comp 100.0 5.2E-38 1.8E-42 316.3 39.3 444 3-502 118-595 (597)
9 2gw1_A Mitochondrial precursor 100.0 7.2E-36 2.4E-40 295.1 35.2 424 35-515 5-473 (514)
10 4g1t_A Interferon-induced prot 100.0 1.3E-35 4.5E-40 289.8 34.0 382 2-520 51-459 (472)
11 2y4t_A DNAJ homolog subfamily 100.0 7.5E-35 2.6E-39 282.7 35.2 326 16-531 6-363 (450)
12 3ieg_A DNAJ homolog subfamily 100.0 4.1E-34 1.4E-38 268.7 35.8 309 35-533 2-342 (359)
13 3hym_B Cell division cycle pro 100.0 2.3E-34 7.8E-39 267.1 33.1 300 25-507 11-321 (330)
14 3fp2_A TPR repeat-containing p 100.0 4E-34 1.4E-38 284.2 32.5 342 2-461 59-500 (537)
15 3hym_B Cell division cycle pro 100.0 1.3E-33 4.3E-38 262.1 32.4 298 3-474 23-322 (330)
16 1fch_A Peroxisomal targeting s 100.0 7.9E-34 2.7E-38 267.8 27.2 325 14-525 13-364 (368)
17 1fch_A Peroxisomal targeting s 100.0 2.7E-33 9.1E-38 264.2 25.2 295 10-486 33-359 (368)
18 4g1t_A Interferon-induced prot 100.0 1.6E-31 5.4E-36 260.9 37.4 373 16-533 25-466 (472)
19 4eqf_A PEX5-related protein; a 100.0 6.3E-33 2.1E-37 261.2 22.2 229 253-511 102-347 (365)
20 4eqf_A PEX5-related protein; a 100.0 7.6E-32 2.6E-36 253.8 23.0 283 23-486 48-356 (365)
21 2h6f_A Protein farnesyltransfe 100.0 1.1E-30 3.6E-35 242.9 26.1 212 255-504 136-366 (382)
22 2h6f_A Protein farnesyltransfe 100.0 7.6E-31 2.6E-35 243.8 24.5 260 28-470 89-366 (382)
23 3uq3_A Heat shock protein STI1 100.0 1.5E-29 5.2E-34 225.7 28.5 250 247-501 2-257 (258)
24 3cv0_A Peroxisome targeting si 100.0 1.7E-30 5.7E-35 240.7 23.0 282 3-488 22-317 (327)
25 3cv0_A Peroxisome targeting si 100.0 3.1E-30 1.1E-34 238.9 23.5 288 35-526 20-321 (327)
26 2xm6_A Protein corresponding t 100.0 9.6E-28 3.3E-32 234.5 40.5 369 2-503 39-452 (490)
27 2ooe_A Cleavage stimulation fa 100.0 1.6E-27 5.6E-32 235.3 40.6 425 3-528 14-500 (530)
28 3u4t_A TPR repeat-containing p 100.0 1.4E-28 4.7E-33 221.4 25.3 257 35-505 2-269 (272)
29 3mkr_A Coatomer subunit epsilo 100.0 3.8E-27 1.3E-31 212.3 30.9 279 9-480 6-288 (291)
30 2pl2_A Hypothetical conserved 100.0 4.8E-28 1.6E-32 208.8 22.8 200 247-484 2-212 (217)
31 3sf4_A G-protein-signaling mod 100.0 1.3E-28 4.4E-33 235.4 21.2 308 2-474 9-364 (406)
32 3uq3_A Heat shock protein STI1 100.0 1E-27 3.4E-32 213.9 24.7 83 384-466 168-256 (258)
33 3u4t_A TPR repeat-containing p 100.0 1.7E-27 5.9E-32 214.2 24.8 200 3-357 4-207 (272)
34 3mkr_A Coatomer subunit epsilo 100.0 8.2E-27 2.8E-31 210.1 28.8 262 43-495 6-273 (291)
35 3sf4_A G-protein-signaling mod 100.0 9E-28 3.1E-32 229.5 23.9 315 34-513 7-369 (406)
36 2xm6_A Protein corresponding t 100.0 2.7E-25 9.2E-30 217.2 40.5 364 20-518 25-430 (490)
37 2pl2_A Hypothetical conserved 100.0 1.6E-27 5.5E-32 205.5 20.9 199 281-517 2-211 (217)
38 2ooe_A Cleavage stimulation fa 100.0 4.9E-26 1.7E-30 224.7 34.1 383 25-517 2-451 (530)
39 3ro2_A PINS homolog, G-protein 99.9 2.6E-26 8.9E-31 213.3 22.9 285 3-452 6-332 (338)
40 4a1s_A PINS, partner of inscut 99.9 2.5E-26 8.4E-31 219.9 22.6 211 2-357 48-291 (411)
41 4a1s_A PINS, partner of inscut 99.9 2.8E-26 9.5E-31 219.5 22.7 292 34-490 46-376 (411)
42 2q7f_A YRRB protein; TPR, prot 99.9 6.4E-26 2.2E-30 200.1 21.3 221 248-505 21-241 (243)
43 3e4b_A ALGK; tetratricopeptide 99.9 4.6E-25 1.6E-29 211.9 27.3 359 6-504 7-403 (452)
44 3ro2_A PINS homolog, G-protein 99.9 1.2E-25 4E-30 208.9 22.4 291 35-490 4-336 (338)
45 1xnf_A Lipoprotein NLPI; TPR, 99.9 9.3E-26 3.2E-30 203.2 17.6 254 9-446 12-269 (275)
46 3vtx_A MAMA; tetratricopeptide 99.9 1.2E-24 4.2E-29 182.8 21.3 172 283-491 4-175 (184)
47 2vq2_A PILW, putative fimbrial 99.9 1.2E-23 4.1E-28 183.1 27.0 217 246-497 4-222 (225)
48 1xnf_A Lipoprotein NLPI; TPR, 99.9 1.6E-24 5.5E-29 195.1 22.1 223 249-513 42-268 (275)
49 2ho1_A Type 4 fimbrial biogene 99.9 1.1E-23 3.6E-28 187.0 26.9 217 246-497 32-249 (252)
50 3vtx_A MAMA; tetratricopeptide 99.9 1.1E-24 3.9E-29 183.0 19.3 174 248-458 3-176 (184)
51 2q7f_A YRRB protein; TPR, prot 99.9 2E-24 7E-29 190.5 21.9 219 2-403 23-241 (243)
52 1ouv_A Conserved hypothetical 99.9 4.2E-23 1.4E-27 185.4 29.4 233 32-459 2-258 (273)
53 3e4b_A ALGK; tetratricopeptide 99.9 1E-24 3.4E-29 209.6 19.0 348 3-487 36-422 (452)
54 4abn_A Tetratricopeptide repea 99.9 6.8E-24 2.3E-28 205.1 24.9 212 265-514 83-315 (474)
55 2ond_A Cleavage stimulation fa 99.9 2.9E-23 9.8E-28 189.5 25.2 255 19-465 33-305 (308)
56 1ouv_A Conserved hypothetical 99.9 9.7E-23 3.3E-27 183.0 28.1 194 253-493 41-258 (273)
57 3ulq_A Response regulator aspa 99.9 1E-23 3.4E-28 199.4 22.6 214 248-488 141-370 (383)
58 2ond_A Cleavage stimulation fa 99.9 3.1E-23 1.1E-27 189.4 25.0 194 256-498 105-304 (308)
59 4i17_A Hypothetical protein; T 99.9 3.2E-23 1.1E-27 180.7 22.3 182 2-322 7-218 (228)
60 4i17_A Hypothetical protein; T 99.9 2.5E-23 8.5E-28 181.4 21.3 210 249-502 6-225 (228)
61 4abn_A Tetratricopeptide repea 99.9 1.8E-23 6.3E-28 202.1 21.4 224 16-414 82-317 (474)
62 2ho1_A Type 4 fimbrial biogene 99.9 2.5E-22 8.5E-27 178.1 26.4 200 2-358 37-238 (252)
63 2vq2_A PILW, putative fimbrial 99.9 3.9E-22 1.3E-26 173.5 26.9 73 32-104 4-76 (225)
64 3ulq_A Response regulator aspa 99.9 2.1E-23 7.2E-28 197.2 19.4 251 251-526 104-374 (383)
65 3qky_A Outer membrane assembly 99.9 4.2E-22 1.4E-26 177.5 24.4 206 2-340 15-247 (261)
66 4gyw_A UDP-N-acetylglucosamine 99.9 3.3E-23 1.1E-27 207.4 17.4 174 245-455 4-177 (723)
67 3qky_A Outer membrane assembly 99.9 1.1E-21 3.7E-26 174.8 23.6 215 247-512 12-253 (261)
68 4gyw_A UDP-N-acetylglucosamine 99.9 2.2E-22 7.4E-27 201.6 20.7 174 279-489 4-177 (723)
69 1hz4_A MALT regulatory protein 99.9 1.4E-20 4.7E-25 177.3 29.9 319 2-491 14-354 (373)
70 3nf1_A KLC 1, kinesin light ch 99.9 6.8E-22 2.3E-26 181.3 19.9 177 2-316 27-227 (311)
71 3nf1_A KLC 1, kinesin light ch 99.9 4.3E-22 1.5E-26 182.6 15.7 272 31-489 22-310 (311)
72 3q15_A PSP28, response regulat 99.9 1.3E-20 4.4E-25 177.6 26.1 213 248-487 139-366 (378)
73 1xi4_A Clathrin heavy chain; a 99.9 1.3E-20 4.5E-25 191.9 27.2 315 7-511 1054-1375(1630)
74 2yhc_A BAMD, UPF0169 lipoprote 99.9 1.8E-20 6E-25 162.5 23.4 188 2-318 4-218 (225)
75 1qqe_A Vesicular transport pro 99.9 2.6E-21 9E-26 174.9 18.5 237 17-432 32-283 (292)
76 1qqe_A Vesicular transport pro 99.9 4.2E-21 1.5E-25 173.5 19.7 229 248-501 35-284 (292)
77 3dra_A Protein farnesyltransfe 99.9 3E-20 1E-24 165.4 24.7 208 257-501 74-303 (306)
78 3urz_A Uncharacterized protein 99.9 3.8E-21 1.3E-25 164.3 18.4 116 2-117 4-135 (208)
79 1hz4_A MALT regulatory protein 99.9 5.4E-20 1.9E-24 173.2 27.8 283 36-488 14-324 (373)
80 2pzi_A Probable serine/threoni 99.9 1.4E-21 4.7E-26 197.4 17.5 208 278-526 388-604 (681)
81 3dra_A Protein farnesyltransfe 99.9 5.1E-20 1.7E-24 163.9 25.4 171 265-466 125-302 (306)
82 3q15_A PSP28, response regulat 99.9 3.1E-21 1.1E-25 181.8 18.0 253 249-526 100-371 (378)
83 4ga2_A E3 SUMO-protein ligase 99.9 4.5E-22 1.5E-26 160.0 9.4 137 370-506 12-149 (150)
84 1xi4_A Clathrin heavy chain; a 99.9 8.7E-19 3E-23 178.7 34.7 315 14-484 1088-1426(1630)
85 2pzi_A Probable serine/threoni 99.9 7.1E-21 2.4E-25 192.1 19.0 183 249-472 393-583 (681)
86 2yhc_A BAMD, UPF0169 lipoprote 99.9 5.1E-20 1.8E-24 159.6 21.5 211 249-492 3-219 (225)
87 3urz_A Uncharacterized protein 99.9 3.3E-20 1.1E-24 158.5 19.6 195 249-500 3-199 (208)
88 4gco_A Protein STI-1; structur 99.9 4.8E-21 1.6E-25 148.5 12.9 120 382-501 6-125 (126)
89 3as5_A MAMA; tetratricopeptide 99.9 6.9E-20 2.3E-24 153.9 21.0 172 2-319 8-179 (186)
90 4gco_A Protein STI-1; structur 99.8 2.5E-20 8.4E-25 144.5 14.2 112 2-113 13-124 (126)
91 3as5_A MAMA; tetratricopeptide 99.8 1.3E-19 4.5E-24 152.2 19.3 171 248-455 6-176 (186)
92 4ga2_A E3 SUMO-protein ligase 99.8 8E-21 2.7E-25 152.7 10.9 147 289-472 2-149 (150)
93 1b89_A Protein (clathrin heavy 99.8 5.5E-21 1.9E-25 175.0 10.1 309 11-502 12-339 (449)
94 3dss_A Geranylgeranyl transfer 99.8 1.7E-17 5.7E-22 148.3 28.6 166 10-321 37-230 (331)
95 3edt_B KLC 2, kinesin light ch 99.8 1.9E-19 6.6E-24 162.4 16.3 165 13-315 12-200 (283)
96 3dss_A Geranylgeranyl transfer 99.8 1.1E-17 3.7E-22 149.5 27.2 235 261-534 40-312 (331)
97 4e6h_A MRNA 3'-END-processing 99.8 1.2E-16 4.2E-21 158.1 36.9 439 18-511 48-561 (679)
98 3gyz_A Chaperone protein IPGC; 99.8 7.8E-20 2.7E-24 145.6 10.7 122 370-491 17-138 (151)
99 1b89_A Protein (clathrin heavy 99.8 7.5E-21 2.5E-25 174.1 2.6 228 257-511 68-302 (449)
100 3edt_B KLC 2, kinesin light ch 99.8 2.6E-18 8.8E-23 154.9 18.4 231 230-487 15-282 (283)
101 2r5s_A Uncharacterized protein 99.8 1.8E-18 6.1E-23 143.5 15.8 165 249-451 5-172 (176)
102 3q7a_A Farnesyltransferase alp 99.8 4.8E-17 1.6E-21 145.8 25.5 200 265-501 104-347 (349)
103 4e6h_A MRNA 3'-END-processing 99.8 7.8E-16 2.7E-20 152.4 36.4 441 3-493 67-577 (679)
104 2vgx_A Chaperone SYCD; alterna 99.8 7.3E-19 2.5E-23 140.6 11.1 134 377-510 9-142 (148)
105 2r5s_A Uncharacterized protein 99.8 1.4E-18 4.8E-23 144.2 12.2 167 281-485 3-172 (176)
106 2ifu_A Gamma-SNAP; membrane fu 99.8 9.9E-18 3.4E-22 152.6 17.2 165 286-478 78-253 (307)
107 3q7a_A Farnesyltransferase alp 99.8 4.7E-17 1.6E-21 145.9 20.9 240 247-530 51-336 (349)
108 3qou_A Protein YBBN; thioredox 99.8 2.1E-17 7.2E-22 148.6 18.6 168 247-451 114-283 (287)
109 4f3v_A ESX-1 secretion system 99.8 8.2E-18 2.8E-22 145.7 14.9 219 248-499 5-249 (282)
110 3qou_A Protein YBBN; thioredox 99.8 2.1E-17 7E-22 148.6 18.0 169 280-485 113-283 (287)
111 2xcb_A PCRH, regulatory protei 99.8 2.7E-18 9.1E-23 136.8 10.5 131 377-507 6-136 (142)
112 3rjv_A Putative SEL1 repeat pr 99.8 1.1E-16 3.8E-21 136.8 20.6 190 267-499 3-208 (212)
113 2vsy_A XCC0866; transferase, g 99.8 3E-17 1E-21 163.3 19.5 165 263-464 2-169 (568)
114 3gyz_A Chaperone protein IPGC; 99.8 8.9E-18 3E-22 133.7 12.5 103 2-104 36-138 (151)
115 2ifu_A Gamma-SNAP; membrane fu 99.8 6.4E-18 2.2E-22 153.8 13.0 179 287-492 39-229 (307)
116 2vsy_A XCC0866; transferase, g 99.7 2.6E-17 9E-22 163.7 17.2 165 297-498 2-169 (568)
117 3upv_A Heat shock protein STI1 99.7 2.9E-17 9.9E-22 127.9 13.5 115 2-116 4-124 (126)
118 2hr2_A Hypothetical protein; a 99.7 5.6E-18 1.9E-22 132.3 8.9 118 1-118 10-150 (159)
119 3upv_A Heat shock protein STI1 99.7 3E-17 1E-21 127.8 13.2 119 386-504 1-125 (126)
120 2c2l_A CHIP, carboxy terminus 99.7 2.1E-17 7.3E-22 147.9 13.1 104 2-105 4-107 (281)
121 1p5q_A FKBP52, FK506-binding p 99.7 4.5E-19 1.5E-23 163.1 0.9 204 259-486 74-294 (336)
122 4gcn_A Protein STI-1; structur 99.7 2.1E-16 7.1E-21 122.6 15.2 118 247-368 5-122 (127)
123 4gcn_A Protein STI-1; structur 99.7 7.4E-17 2.5E-21 125.2 11.8 108 2-110 8-122 (127)
124 2vgx_A Chaperone SYCD; alterna 99.7 1.7E-16 5.9E-21 126.8 13.8 117 2-118 21-137 (148)
125 1p5q_A FKBP52, FK506-binding p 99.7 1E-17 3.4E-22 154.1 6.7 128 384-511 142-284 (336)
126 4f3v_A ESX-1 secretion system 99.7 3.6E-16 1.2E-20 135.5 15.9 200 3-358 8-237 (282)
127 3sz7_A HSC70 cochaperone (SGT) 99.7 2.1E-16 7.1E-21 129.4 13.3 127 384-510 6-134 (164)
128 2xcb_A PCRH, regulatory protei 99.7 2.2E-16 7.6E-21 125.6 13.1 117 2-118 18-134 (142)
129 3rkv_A Putative peptidylprolyl 99.7 2.1E-16 7E-21 129.1 13.1 120 2-121 11-149 (162)
130 2c2l_A CHIP, carboxy terminus 99.7 1.4E-16 4.8E-21 142.6 13.1 180 283-504 3-182 (281)
131 3sz7_A HSC70 cochaperone (SGT) 99.7 3.7E-16 1.3E-20 127.9 14.1 119 2-120 11-131 (164)
132 2hr2_A Hypothetical protein; a 99.7 7.4E-17 2.5E-21 126.0 9.0 117 389-505 11-150 (159)
133 1dce_A Protein (RAB geranylger 99.7 1.7E-16 5.9E-21 155.2 13.7 180 261-475 39-244 (567)
134 2fo7_A Synthetic consensus TPR 99.7 1.4E-15 4.9E-20 119.9 16.0 134 327-490 3-136 (136)
135 2e2e_A Formate-dependent nitri 99.7 4.9E-16 1.7E-20 129.0 13.6 130 368-497 23-155 (177)
136 1hxi_A PEX5, peroxisome target 99.7 2.9E-16 9.8E-21 120.6 11.0 102 4-105 19-120 (121)
137 3rkv_A Putative peptidylprolyl 99.7 5E-16 1.7E-20 126.8 13.1 124 388-511 10-152 (162)
138 2lni_A Stress-induced-phosphop 99.7 7E-16 2.4E-20 121.3 13.4 123 384-506 11-133 (133)
139 2fo7_A Synthetic consensus TPR 99.7 2.6E-15 8.9E-20 118.4 16.7 105 2-106 1-105 (136)
140 2vyi_A SGTA protein; chaperone 99.7 9E-16 3.1E-20 120.3 13.7 124 384-507 7-130 (131)
141 3q49_B STIP1 homology and U bo 99.7 7.3E-16 2.5E-20 122.0 13.3 126 384-509 4-134 (137)
142 2fbn_A 70 kDa peptidylprolyl i 99.7 1.6E-16 5.3E-21 134.7 9.9 128 384-511 33-176 (198)
143 3mv2_B Coatomer subunit epsilo 99.7 1.3E-14 4.5E-19 127.4 21.4 186 269-496 85-292 (310)
144 2qfc_A PLCR protein; TPR, HTH, 99.7 3.6E-15 1.2E-19 134.8 17.9 181 282-487 73-267 (293)
145 3rjv_A Putative SEL1 repeat pr 99.7 9.5E-15 3.2E-19 124.8 19.4 188 235-465 5-208 (212)
146 1a17_A Serine/threonine protei 99.7 2.3E-15 8E-20 123.5 14.9 136 388-523 12-149 (166)
147 2lni_A Stress-induced-phosphop 99.7 2E-15 6.7E-20 118.7 13.7 117 2-118 16-132 (133)
148 1hxi_A PEX5, peroxisome target 99.6 1.1E-15 3.8E-20 117.3 11.4 103 390-492 18-120 (121)
149 3mv2_B Coatomer subunit epsilo 99.6 3.8E-14 1.3E-18 124.5 22.5 173 252-460 102-290 (310)
150 2qfc_A PLCR protein; TPR, HTH, 99.6 2.2E-14 7.7E-19 129.6 20.9 180 245-452 70-266 (293)
151 1elw_A TPR1-domain of HOP; HOP 99.6 5.9E-15 2E-19 113.1 14.7 113 2-114 4-116 (118)
152 2xev_A YBGF; tetratricopeptide 99.6 3.5E-15 1.2E-19 116.6 13.1 116 1-116 1-122 (129)
153 1hh8_A P67PHOX, NCF-2, neutrop 99.6 8.9E-15 3E-19 125.5 16.7 136 325-493 6-157 (213)
154 1kt0_A FKBP51, 51 kDa FK506-bi 99.6 1.6E-16 5.4E-21 152.6 6.2 128 384-511 263-405 (457)
155 2fbn_A 70 kDa peptidylprolyl i 99.6 5.6E-16 1.9E-20 131.2 9.0 97 389-485 88-185 (198)
156 2vyi_A SGTA protein; chaperone 99.6 7.6E-15 2.6E-19 114.9 14.9 119 2-120 12-130 (131)
157 1na0_A Designed protein CTPR3; 99.6 1E-14 3.4E-19 113.2 15.4 121 385-505 4-125 (125)
158 1elw_A TPR1-domain of HOP; HOP 99.6 9E-15 3.1E-19 112.1 14.8 114 388-501 3-116 (118)
159 3q49_B STIP1 homology and U bo 99.6 3.4E-15 1.2E-19 118.1 12.6 117 2-118 9-130 (137)
160 1dce_A Protein (RAB geranylger 99.6 8.5E-15 2.9E-19 143.3 17.8 183 300-509 45-244 (567)
161 3u3w_A Transcriptional activat 99.6 7.5E-15 2.6E-19 132.7 15.3 175 287-486 78-266 (293)
162 2uy1_A Cleavage stimulation fa 99.6 4.8E-12 1.6E-16 122.0 35.6 384 2-522 14-415 (493)
163 1a17_A Serine/threonine protei 99.6 2.3E-14 7.9E-19 117.4 16.9 134 323-486 11-146 (166)
164 3u3w_A Transcriptional activat 99.6 2E-14 6.8E-19 129.9 17.3 180 249-452 74-266 (293)
165 1hh8_A P67PHOX, NCF-2, neutrop 99.6 8.2E-14 2.8E-18 119.5 20.3 151 248-424 4-156 (213)
166 2dba_A Smooth muscle cell asso 99.6 1.3E-14 4.4E-19 116.4 13.5 119 384-502 23-144 (148)
167 1elr_A TPR2A-domain of HOP; HO 99.6 1.5E-14 5.2E-19 113.2 12.9 121 387-508 2-129 (131)
168 2xev_A YBGF; tetratricopeptide 99.6 2.1E-14 7.3E-19 112.1 13.6 115 391-505 4-124 (129)
169 2e2e_A Formate-dependent nitri 99.6 2.3E-14 7.7E-19 118.9 14.4 130 260-426 20-152 (177)
170 1na0_A Designed protein CTPR3; 99.6 3.7E-14 1.3E-18 109.9 14.7 116 2-117 9-124 (125)
171 2dba_A Smooth muscle cell asso 99.6 3.1E-14 1.1E-18 114.1 14.6 113 2-114 28-143 (148)
172 2kck_A TPR repeat; tetratricop 99.6 1.3E-14 4.4E-19 110.1 10.1 107 385-491 2-111 (112)
173 3gw4_A Uncharacterized protein 99.6 1.5E-13 5.1E-18 116.8 17.6 179 12-333 2-195 (203)
174 2if4_A ATFKBP42; FKBP-like, al 99.6 7.5E-15 2.6E-19 134.9 9.9 112 2-113 179-307 (338)
175 1zu2_A Mitochondrial import re 99.6 8.1E-15 2.8E-19 114.2 8.0 103 12-114 12-135 (158)
176 1zu2_A Mitochondrial import re 99.6 1.2E-14 4.2E-19 113.2 8.8 97 403-499 16-133 (158)
177 1elr_A TPR2A-domain of HOP; HO 99.6 5.9E-14 2E-18 109.8 13.0 118 2-120 4-128 (131)
178 1kt0_A FKBP51, 51 kDa FK506-bi 99.5 3.4E-14 1.2E-18 136.3 13.5 119 2-120 268-401 (457)
179 3k9i_A BH0479 protein; putativ 99.5 1.3E-14 4.3E-19 111.0 7.9 109 401-509 2-113 (117)
180 4b4t_Q 26S proteasome regulato 99.5 1.1E-13 3.7E-18 133.0 16.3 212 3-358 5-245 (434)
181 1wao_1 Serine/threonine protei 99.5 9.4E-15 3.2E-19 140.7 8.7 125 389-513 6-132 (477)
182 3k9i_A BH0479 protein; putativ 99.5 1.9E-14 6.4E-19 110.0 7.8 103 14-116 2-107 (117)
183 1ihg_A Cyclophilin 40; ppiase 99.5 8.2E-14 2.8E-18 129.3 13.6 119 2-120 223-357 (370)
184 2kck_A TPR repeat; tetratricop 99.5 6.2E-14 2.1E-18 106.2 10.6 103 2-104 6-111 (112)
185 1ihg_A Cyclophilin 40; ppiase 99.5 5.9E-14 2E-18 130.2 12.3 123 389-511 223-361 (370)
186 4b4t_Q 26S proteasome regulato 99.5 1.7E-13 5.7E-18 131.7 15.1 210 252-486 6-245 (434)
187 2if4_A ATFKBP42; FKBP-like, al 99.5 5.8E-14 2E-18 129.0 10.0 155 325-492 179-334 (338)
188 1wao_1 Serine/threonine protei 99.5 3E-14 1E-18 137.2 6.8 135 326-490 7-154 (477)
189 3gw4_A Uncharacterized protein 99.5 1.1E-12 3.7E-17 111.4 15.6 168 260-452 2-176 (203)
190 2l6j_A TPR repeat-containing p 99.4 1.7E-13 5.8E-18 103.7 5.9 95 2-96 4-104 (111)
191 2kat_A Uncharacterized protein 99.4 2.2E-12 7.6E-17 98.1 10.5 102 406-507 2-105 (115)
192 2uy1_A Cleavage stimulation fa 99.4 4.8E-11 1.7E-15 115.0 22.2 86 425-511 288-374 (493)
193 3ro3_A PINS homolog, G-protein 99.4 3.3E-12 1.1E-16 104.0 11.1 148 247-419 6-159 (164)
194 3ro3_A PINS homolog, G-protein 99.4 2E-12 6.7E-17 105.4 9.3 142 324-489 8-161 (164)
195 2kat_A Uncharacterized protein 99.3 4.4E-12 1.5E-16 96.4 10.0 102 19-120 2-105 (115)
196 2l6j_A TPR repeat-containing p 99.3 6.2E-12 2.1E-16 94.9 10.5 93 422-514 3-101 (111)
197 2kc7_A BFR218_protein; tetratr 99.3 5.3E-12 1.8E-16 93.0 7.0 92 5-104 3-95 (99)
198 1na3_A Designed protein CTPR2; 99.3 2.7E-11 9.1E-16 87.5 10.4 84 34-117 7-90 (91)
199 1na3_A Designed protein CTPR2; 99.3 2.7E-11 9.4E-16 87.5 10.2 83 388-470 8-90 (91)
200 3ma5_A Tetratricopeptide repea 99.2 4.3E-11 1.5E-15 88.0 9.7 89 419-507 3-93 (100)
201 3ma5_A Tetratricopeptide repea 99.2 8.8E-11 3E-15 86.3 9.6 87 31-117 2-90 (100)
202 2kc7_A BFR218_protein; tetratr 99.2 2.4E-11 8.2E-16 89.4 6.4 91 393-491 4-95 (99)
203 1klx_A Cysteine rich protein B 99.1 1.5E-09 5.1E-14 84.9 14.2 98 395-498 31-136 (138)
204 3u64_A Protein TP_0956; tetrat 99.1 3E-09 1E-13 90.9 15.2 106 384-489 147-272 (301)
205 3n71_A Histone lysine methyltr 99.0 8.1E-10 2.8E-14 105.4 8.8 126 395-520 315-464 (490)
206 3bee_A Putative YFRE protein; 99.0 3.8E-09 1.3E-13 75.4 10.0 74 32-105 2-78 (93)
207 3bee_A Putative YFRE protein; 99.0 5.5E-09 1.9E-13 74.5 10.3 74 419-492 2-78 (93)
208 1pc2_A Mitochondria fission pr 99.0 8E-09 2.7E-13 79.4 11.5 104 16-119 12-120 (152)
209 3ly7_A Transcriptional activat 99.0 2.3E-08 7.7E-13 89.5 15.8 108 384-492 228-345 (372)
210 1pc2_A Mitochondria fission pr 98.9 6.7E-09 2.3E-13 79.9 10.7 101 405-505 14-119 (152)
211 3n71_A Histone lysine methyltr 98.9 2.1E-09 7.4E-14 102.5 9.6 125 345-487 325-465 (490)
212 3u64_A Protein TP_0956; tetrat 98.9 7.7E-08 2.6E-12 82.2 17.9 85 372-456 180-273 (301)
213 3ly7_A Transcriptional activat 98.9 8.3E-08 2.8E-12 85.9 18.8 74 384-458 272-345 (372)
214 1klx_A Cysteine rich protein B 98.9 1.4E-08 4.9E-13 79.3 12.4 120 298-464 9-136 (138)
215 2v5f_A Prolyl 4-hydroxylase su 98.9 1.8E-08 6.3E-13 74.1 9.9 76 2-77 5-87 (104)
216 2v5f_A Prolyl 4-hydroxylase su 98.7 1.1E-07 3.6E-12 70.0 10.8 76 425-500 7-89 (104)
217 3qww_A SET and MYND domain-con 98.7 1.2E-07 4.1E-12 88.9 11.6 104 5-108 301-425 (433)
218 3qww_A SET and MYND domain-con 98.7 1E-07 3.6E-12 89.3 10.8 97 400-496 309-426 (433)
219 3qwp_A SET and MYND domain-con 98.6 1.5E-07 5.1E-12 88.5 9.8 108 397-504 295-426 (429)
220 3qwp_A SET and MYND domain-con 98.6 2.6E-07 9E-12 86.9 11.1 106 4-109 289-415 (429)
221 1nzn_A CGI-135 protein, fissio 98.5 2E-06 6.7E-11 63.5 11.4 103 15-117 14-121 (126)
222 1nzn_A CGI-135 protein, fissio 98.4 2.2E-06 7.4E-11 63.3 10.3 98 406-503 18-120 (126)
223 4h7y_A Dual specificity protei 98.4 1.7E-05 5.7E-10 59.7 13.6 113 384-497 8-134 (161)
224 4h7y_A Dual specificity protei 98.1 0.00019 6.6E-09 54.1 15.1 129 278-438 7-142 (161)
225 3ffl_A Anaphase-promoting comp 98.1 1.8E-05 6.1E-10 61.2 9.1 110 4-114 22-165 (167)
226 4g26_A Pentatricopeptide repea 98.1 0.00027 9.4E-09 68.0 19.5 184 287-505 29-224 (501)
227 4g26_A Pentatricopeptide repea 98.1 0.00081 2.8E-08 64.7 22.7 177 253-467 29-220 (501)
228 3o48_A Mitochondria fission 1 97.9 0.00019 6.6E-09 53.0 10.4 83 422-504 39-125 (134)
229 1y8m_A FIS1; mitochondria, unk 97.8 0.00055 1.9E-08 51.4 12.7 85 420-504 36-124 (144)
230 1y8m_A FIS1; mitochondria, unk 97.8 0.00061 2.1E-08 51.1 12.8 99 18-117 22-124 (144)
231 3o48_A Mitochondria fission 1 97.8 0.00043 1.5E-08 51.2 11.8 98 19-117 24-125 (134)
232 3ffl_A Anaphase-promoting comp 97.8 0.00021 7.3E-09 55.3 10.5 110 391-501 22-165 (167)
233 3txn_A 26S proteasome regulato 97.3 0.11 3.7E-06 47.6 24.4 102 253-358 102-210 (394)
234 3txn_A 26S proteasome regulato 96.8 0.21 7.2E-06 45.7 19.6 94 393-486 103-210 (394)
235 4gns_B Protein CSD3, chitin bi 96.8 0.06 2E-06 53.8 17.1 61 250-310 337-397 (754)
236 3kae_A CDC27, possible protein 96.6 0.16 5.4E-06 39.2 14.8 180 282-489 31-240 (242)
237 4gns_B Protein CSD3, chitin bi 96.5 0.016 5.5E-07 57.8 11.1 59 425-483 339-397 (754)
238 2ff4_A Probable regulatory pro 96.4 0.038 1.3E-06 51.1 12.8 95 4-98 117-233 (388)
239 3mkq_A Coatomer beta'-subunit; 96.3 0.23 7.7E-06 51.3 19.4 179 259-506 608-798 (814)
240 1zbp_A Hypothetical protein VP 96.2 0.3 1E-05 41.4 15.4 130 258-423 5-134 (273)
241 4b4t_P 26S proteasome regulato 96.2 0.13 4.4E-06 48.5 14.9 196 263-486 29-247 (445)
242 1zbp_A Hypothetical protein VP 96.1 0.076 2.6E-06 45.0 11.2 63 9-71 4-66 (273)
243 1qsa_A Protein (soluble lytic 96.0 1.3 4.6E-05 43.4 34.0 106 3-119 7-117 (618)
244 1ya0_A SMG-7 transcript varian 95.8 0.065 2.2E-06 50.9 10.9 80 390-469 153-232 (497)
245 4b4t_R RPN7, 26S proteasome re 95.7 0.041 1.4E-06 51.7 9.5 102 386-487 128-238 (429)
246 2ff4_A Probable regulatory pro 95.6 0.16 5.6E-06 46.8 12.8 87 399-485 125-233 (388)
247 3kae_A CDC27, possible protein 95.6 0.59 2E-05 36.1 20.1 97 6-107 37-151 (242)
248 4b4t_P 26S proteasome regulato 95.4 1.8 6.1E-05 40.7 25.1 106 248-357 135-246 (445)
249 1ya0_A SMG-7 transcript varian 95.3 0.099 3.4E-06 49.6 10.3 71 366-436 163-233 (497)
250 3mkq_B Coatomer subunit alpha; 95.1 0.69 2.4E-05 36.6 12.8 99 367-483 17-115 (177)
251 3mkq_B Coatomer subunit alpha; 94.7 0.74 2.5E-05 36.4 12.1 49 258-311 13-61 (177)
252 4b4t_R RPN7, 26S proteasome re 94.6 0.089 3E-06 49.4 8.1 99 3-101 132-239 (429)
253 4b4t_S RPN3, 26S proteasome re 94.2 1.7 5.7E-05 41.1 15.3 202 253-489 139-376 (523)
254 3spa_A Mtrpol, DNA-directed RN 94.2 0.52 1.8E-05 48.5 12.5 95 390-485 128-229 (1134)
255 4fhn_B Nucleoporin NUP120; pro 94.0 3.8 0.00013 44.0 19.9 56 39-98 815-870 (1139)
256 4b4t_S RPN3, 26S proteasome re 93.9 0.1 3.5E-06 49.1 6.6 105 384-490 176-303 (523)
257 3spa_A Mtrpol, DNA-directed RN 93.2 2.8 9.5E-05 43.4 15.8 105 248-364 125-236 (1134)
258 3mkq_A Coatomer beta'-subunit; 93.1 0.99 3.4E-05 46.5 13.4 47 259-310 661-707 (814)
259 2wpv_A GET4, UPF0363 protein Y 93.1 4.3 0.00015 35.7 18.9 67 385-451 130-216 (312)
260 2llv_A Heat shock protein STI1 92.4 0.041 1.4E-06 35.9 1.2 64 131-194 5-69 (71)
261 1qsa_A Protein (soluble lytic 92.3 9.2 0.00032 37.5 29.7 86 24-113 57-145 (618)
262 3lvg_A Clathrin heavy chain 1; 91.2 1.6E-05 5.3E-10 72.7 -21.7 81 34-120 52-132 (624)
263 4fhn_B Nucleoporin NUP120; pro 90.7 1.9 6.6E-05 46.2 12.4 123 383-506 836-986 (1139)
264 3lpz_A GET4 (YOR164C homolog); 90.0 9.9 0.00034 33.7 24.5 122 385-506 132-297 (336)
265 4ady_A RPN2, 26S proteasome re 89.5 21 0.00073 36.8 28.7 260 251-527 377-658 (963)
266 2lnm_A Protein TIC 40, chlorop 83.1 0.49 1.7E-05 29.9 1.5 55 140-194 3-57 (62)
267 3ax2_A Mitochondrial import re 81.5 5.2 0.00018 26.0 5.8 39 461-499 21-59 (73)
268 2vkj_A TM1634; membrane protei 81.3 3.9 0.00013 27.3 5.1 29 3-31 54-82 (106)
269 4gq2_M Nucleoporin NUP120; bet 81.1 20 0.00068 37.6 13.4 95 394-492 815-933 (950)
270 3ax2_A Mitochondrial import re 80.6 3.8 0.00013 26.6 4.9 29 6-34 21-49 (73)
271 2ijq_A Hypothetical protein; s 80.5 8.7 0.0003 29.7 7.8 60 5-64 35-103 (161)
272 3lvg_A Clathrin heavy chain 1; 80.1 0.00096 3.3E-08 61.3 -16.3 242 250-511 54-324 (624)
273 2w2u_A Hypothetical P60 katani 77.8 2.7 9.3E-05 28.3 3.8 26 4-29 21-46 (83)
274 1wy6_A Hypothetical protein ST 77.8 15 0.00051 27.5 7.8 57 258-314 99-155 (172)
275 4gq2_M Nucleoporin NUP120; bet 76.7 78 0.0027 33.2 17.5 54 40-97 814-867 (950)
276 2v6y_A AAA family ATPase, P60 75.9 3.3 0.00011 27.9 3.8 25 5-29 14-38 (83)
277 4ady_A RPN2, 26S proteasome re 75.1 82 0.0028 32.6 23.0 61 252-312 492-552 (963)
278 4a5x_A MITD1, MIT domain-conta 73.6 4.1 0.00014 27.7 3.8 28 3-30 17-44 (86)
279 3t5v_B Nuclear mRNA export pro 69.5 14 0.00048 34.5 7.8 61 395-455 182-253 (455)
280 2crb_A Nuclear receptor bindin 68.8 7 0.00024 26.5 4.0 24 5-28 18-41 (97)
281 2cfu_A SDSA1; SDS-hydrolase, l 67.6 6.5 0.00022 39.1 5.5 48 3-50 450-497 (658)
282 3esl_A Checkpoint serine/threo 67.2 38 0.0013 27.3 8.7 70 33-103 77-148 (202)
283 3t5x_A PCI domain-containing p 66.1 19 0.00065 29.3 7.1 38 247-284 11-48 (203)
284 2v6x_A Vacuolar protein sortin 66.0 7.1 0.00024 26.4 3.8 25 5-29 16-40 (85)
285 1wfd_A Hypothetical protein 15 65.6 7.3 0.00025 26.9 3.8 25 5-29 18-42 (93)
286 1om2_A Protein (mitochondrial 64.6 7.2 0.00024 26.9 3.5 34 461-494 24-57 (95)
287 3lpz_A GET4 (YOR164C homolog); 63.9 79 0.0027 28.0 23.7 20 258-277 195-214 (336)
288 1om2_A Protein (mitochondrial 63.7 7.2 0.00024 26.9 3.4 27 7-33 25-51 (95)
289 2rpa_A Katanin P60 ATPase-cont 61.1 7.5 0.00026 25.7 3.0 25 6-30 16-40 (78)
290 3t5x_A PCI domain-containing p 60.8 18 0.00062 29.4 6.1 32 72-103 16-47 (203)
291 2cpt_A SKD1 protein, vacuolar 59.4 9.2 0.00031 27.8 3.6 12 18-29 15-26 (117)
292 2cwy_A Hypothetical protein TT 59.4 21 0.00072 24.6 5.2 29 6-34 5-33 (94)
293 1wy6_A Hypothetical protein ST 57.0 59 0.002 24.4 13.4 53 399-451 101-153 (172)
294 2crb_A Nuclear receptor bindin 56.4 25 0.00087 23.8 4.9 29 249-277 14-42 (97)
295 2pmr_A Uncharacterized protein 53.6 12 0.00039 25.4 3.0 24 2-25 39-62 (87)
296 2w2u_A Hypothetical P60 katani 53.3 42 0.0014 22.4 5.8 24 253-276 22-45 (83)
297 2oo2_A Hypothetical protein AF 53.0 12 0.00041 25.2 3.0 26 1-26 34-59 (86)
298 3re2_A Predicted protein; meni 51.9 95 0.0033 27.6 9.0 120 386-510 252-394 (472)
299 3t5v_B Nuclear mRNA export pro 50.8 26 0.00088 32.8 6.0 88 16-103 140-254 (455)
300 2rpa_A Katanin P60 ATPase-cont 48.6 21 0.00072 23.5 3.6 26 427-452 16-41 (78)
301 2cfu_A SDSA1; SDS-hydrolase, l 46.7 44 0.0015 33.2 7.3 55 457-511 449-503 (658)
302 2ijq_A Hypothetical protein; s 46.1 1E+02 0.0034 23.8 9.7 64 250-313 32-104 (161)
303 2uwj_G Type III export protein 45.9 73 0.0025 22.2 7.2 84 399-488 16-100 (115)
304 2v6y_A AAA family ATPase, P60 45.6 42 0.0014 22.4 4.9 15 297-311 24-38 (83)
305 2p58_C Putative type III secre 45.1 76 0.0026 22.1 8.7 81 394-480 12-92 (116)
306 2yhe_A SEC-alkyl sulfatase; hy 50.7 4.6 0.00016 40.1 0.0 49 3-51 462-510 (668)
307 4a5x_A MITD1, MIT domain-conta 44.1 51 0.0017 22.2 5.1 26 252-277 18-43 (86)
308 3re2_A Predicted protein; meni 38.5 1.1E+02 0.0037 27.3 7.3 57 362-418 255-325 (472)
309 2npu_A FKBP12-rapamycin comple 38.3 75 0.0026 23.3 5.5 77 429-505 46-124 (126)
310 3snx_A SUSD homolog, putative 37.7 2.2E+02 0.0076 26.6 10.3 33 386-418 188-220 (460)
311 3u84_A Menin; MLL, JUND, ledgf 36.9 2.5E+02 0.0085 25.7 11.1 59 442-500 298-367 (550)
312 2v6x_A Vacuolar protein sortin 36.8 67 0.0023 21.5 4.9 25 253-277 16-40 (85)
313 3bu8_A Telomeric repeat-bindin 35.8 1.8E+02 0.0061 23.7 7.7 41 395-435 120-160 (235)
314 2qx5_A Nucleoporin NIC96; mRNA 35.1 3.4E+02 0.012 26.8 17.8 22 255-276 448-469 (661)
315 2vkj_A TM1634; membrane protei 34.2 1.1E+02 0.0036 20.6 5.5 33 248-280 51-83 (106)
316 2ynq_A ESSB; membrane protein, 31.4 1.8E+02 0.006 22.4 8.5 84 5-96 11-99 (161)
317 4b4t_O 26S proteasome regulato 31.4 3E+02 0.01 25.0 11.3 97 257-357 83-197 (393)
318 3lxu_X Tripeptidyl-peptidase 2 30.5 5.6E+02 0.019 27.9 19.2 48 249-296 1106-1153(1354)
319 2cpt_A SKD1 protein, vacuolar 30.3 82 0.0028 22.8 4.6 9 268-276 17-25 (117)
320 2wpv_A GET4, UPF0363 protein Y 30.0 2.8E+02 0.0096 24.2 19.6 64 421-484 132-215 (312)
321 3bqo_A Telomeric repeat-bindin 29.8 72 0.0025 25.5 4.5 43 395-437 123-165 (211)
322 3bu8_A Telomeric repeat-bindin 28.3 60 0.0021 26.3 3.8 41 44-84 122-162 (235)
323 2npu_A FKBP12-rapamycin comple 28.2 1.3E+02 0.0044 22.1 5.3 17 11-27 49-65 (126)
324 2cwy_A Hypothetical protein TT 27.5 1.5E+02 0.0051 20.3 7.5 61 290-357 7-67 (94)
325 3bqo_A Telomeric repeat-bindin 27.4 53 0.0018 26.2 3.4 50 42-91 123-172 (211)
326 1wfd_A Hypothetical protein 15 26.6 1.6E+02 0.0053 20.2 6.3 13 345-357 31-43 (93)
327 4gq4_A Menin; tumor suppressor 24.6 4.1E+02 0.014 24.3 12.0 25 425-449 305-329 (489)
328 1wcr_A PTS system, N, N'-diace 23.8 97 0.0033 21.8 3.9 25 4-28 20-44 (103)
329 1wcr_A PTS system, N, N'-diace 22.9 2E+02 0.0069 20.1 5.5 35 243-277 11-45 (103)
330 3myv_A SUSD superfamily protei 22.6 1.3E+02 0.0043 28.2 5.8 32 68-99 188-219 (454)
331 3esl_A Checkpoint serine/threo 22.3 3.1E+02 0.011 22.1 11.3 71 245-316 75-147 (202)
332 2yin_A DOCK2, dedicator of cyt 22.1 4.7E+02 0.016 24.2 12.0 91 248-338 33-146 (436)
333 3mcx_A SUSD superfamily protei 21.8 1.6E+02 0.0053 27.8 6.3 31 69-99 201-231 (477)
334 3l8r_A PTCA, putative PTS syst 21.3 2.2E+02 0.0075 20.6 5.4 35 242-276 29-63 (120)
335 4fm3_A Uncharacterized hypothe 20.6 1.9E+02 0.0065 20.0 4.7 28 2-29 34-61 (98)
336 3l8r_A PTCA, putative PTS syst 20.6 1.2E+02 0.0041 22.0 3.9 25 4-28 39-63 (120)
337 3snx_A SUSD homolog, putative 20.4 89 0.003 29.3 4.3 33 67-99 188-220 (460)
No 1
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=9.6e-45 Score=344.87 Aligned_cols=378 Identities=20% Similarity=0.247 Sum_probs=347.4
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHhccCCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHHHHHhhccC
Q 009278 6 KAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQD 85 (538)
Q Consensus 6 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 85 (538)
+.+|..+++.|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++..+|.++.++..+|.++...|+
T Consensus 3 ~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 3 MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp CTHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred hhHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCC
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhcCCCcHHHHhhHHHHHHHHhhcccCCCCCCCCcccccccCCchhhcccCCCCCCCcccHHHHHHHHH
Q 009278 86 YIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRNMMK 165 (538)
Q Consensus 86 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (538)
+++|+..|+++++.+|++..++..++.++...|+. +.+...+.+
T Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~------------------------------------~~A~~~~~~ 126 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDM------------------------------------EGAVQAYVS 126 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCS------------------------------------SHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCH------------------------------------HHHHHHHHH
Confidence 99999999999999999999999999999998776 344455555
Q ss_pred hhhcCCCchhhhhchHHHHHHHHHHHhhhcCCCCCCCccccccccCCCCCCCccccccCCCCCCCCCCccccHHHHHHHH
Q 009278 166 DIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKEAKE 245 (538)
Q Consensus 166 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (538)
.+..+|+
T Consensus 127 al~~~p~------------------------------------------------------------------------- 133 (388)
T 1w3b_A 127 ALQYNPD------------------------------------------------------------------------- 133 (388)
T ss_dssp HHHHCTT-------------------------------------------------------------------------
T ss_pred HHHhCCC-------------------------------------------------------------------------
Confidence 5555554
Q ss_pred hHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHH
Q 009278 246 RKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIA 325 (538)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 325 (538)
....+..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|++++..+|++ .
T Consensus 134 ---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-------~ 203 (388)
T 1w3b_A 134 ---LYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNF-------L 203 (388)
T ss_dssp ---CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC-------H
T ss_pred ---cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc-------H
Confidence 445566789999999999999999999999999999999999999999999999999999999999987 5
Q ss_pred HHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCCh--------hHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHH
Q 009278 326 RALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNP--------DTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGN 397 (538)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~ 397 (538)
.++..+|.++...++ +++|+..|++++...|+. .++...|++++|+..+++++..+|+++.++..+|.
T Consensus 204 ~~~~~lg~~~~~~~~----~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 279 (388)
T 1w3b_A 204 DAYINLGNVLKEARI----FDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLAN 279 (388)
T ss_dssp HHHHHHHHHHHTTTC----TTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCC----HHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence 677788888888888 999999999999988863 25567789999999999999999999999999999
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCchHHHHHHHHHHHHccCHHHHH
Q 009278 398 EFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKAL 477 (538)
Q Consensus 398 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 477 (538)
++...|++++|+..|+++++..|.++.++..+|.++...|++++|+..++++++.+|+++.++..+|.++...|++++|+
T Consensus 280 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 359 (388)
T 1w3b_A 280 ALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEAL 359 (388)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCCHHHHHHHHHHHHHhhh
Q 009278 478 ETYQEGLKHDPQNQELLDGVRRCVQQINK 506 (538)
Q Consensus 478 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 506 (538)
..|+++++++|+++.++..++.++..+|+
T Consensus 360 ~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 360 MHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 99999999999999999999999888763
No 2
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=1.2e-40 Score=316.74 Aligned_cols=365 Identities=17% Similarity=0.180 Sum_probs=334.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHHHHHhhccCHHHHHHHHHhhhhcCCCcHHHHhhHHHHHHHHhhc
Q 009278 41 NRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASAS 120 (538)
Q Consensus 41 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 120 (538)
.+|..++..|++++|+..+++++..+|+++.++..+|.++...|++++|...++++++.+|.+..++..++.++...|+.
T Consensus 4 ~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 4 ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp THHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred hHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCH
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999998776
Q ss_pred ccCCCCCCCCcccccccCCchhhcccCCCCCCCcccHHHHHHHHHhhhcCCCchhhhhchHHHHHHHHHHHhhhcCCCCC
Q 009278 121 FRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRNMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTG 200 (538)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (538)
+.+...+.+.+...|+
T Consensus 84 ------------------------------------~~A~~~~~~al~~~p~---------------------------- 99 (388)
T 1w3b_A 84 ------------------------------------QEAIEHYRHALRLKPD---------------------------- 99 (388)
T ss_dssp ------------------------------------HHHHHHHHHHHHHCTT----------------------------
T ss_pred ------------------------------------HHHHHHHHHHHHcCcc----------------------------
Confidence 3445555555555544
Q ss_pred CCccccccccCCCCCCCccccccCCCCCCCCCCccccHHHHHHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhC
Q 009278 201 GDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKEAKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELD 280 (538)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 280 (538)
...++..+|.++...|++++|+..|+++++.+
T Consensus 100 ------------------------------------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 131 (388)
T 1w3b_A 100 ------------------------------------------------FIDGYINLAAALVAAGDMEGAVQAYVSALQYN 131 (388)
T ss_dssp ------------------------------------------------CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC
T ss_pred ------------------------------------------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 45567788999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCC
Q 009278 281 DEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHR 360 (538)
Q Consensus 281 p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 360 (538)
|++..++..+|.++...|++++|+..|++++...|++ ..++..+|.++...++ +++|+..|++++...|
T Consensus 132 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~l~~~~~~~g~----~~~A~~~~~~al~~~p 200 (388)
T 1w3b_A 132 PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNF-------AVAWSNLGCVFNAQGE----IWLAIHHFEKAVTLDP 200 (388)
T ss_dssp TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHTTTC----HHHHHHHHHHHHHHCT
T ss_pred CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCC----HHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999988 6777888888888888 9999999999999988
Q ss_pred Ch--------hHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHhHHHHH
Q 009278 361 NP--------DTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAAC 432 (538)
Q Consensus 361 ~~--------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~ 432 (538)
.. .++...+++++|+..+.+++..+|+++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.+
T Consensus 201 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 280 (388)
T 1w3b_A 201 NFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANA 280 (388)
T ss_dssp TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence 73 3566778999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCchhHHHHHHHHHhcCCCchHHHHHHHHHHHHccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhccCCC
Q 009278 433 YTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDGVRRCVQQINKAGRGEL 512 (538)
Q Consensus 433 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~ 512 (538)
+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++..|++..++..++.++...|++++|.
T Consensus 281 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~- 359 (388)
T 1w3b_A 281 LKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEAL- 359 (388)
T ss_dssp HHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHH-
T ss_pred HHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHH-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999988877
Q ss_pred ChHHHHHHHHhccC-Cchhhhhcc
Q 009278 513 SPEELKERQAKGMQ-DPKFRTYSL 535 (538)
Q Consensus 513 ~~~~~~~~~~~~~~-~p~~~~~~~ 535 (538)
+.+++++. +|....++.
T Consensus 360 ------~~~~~a~~~~p~~~~a~~ 377 (388)
T 1w3b_A 360 ------MHYKEAIRISPTFADAYS 377 (388)
T ss_dssp ------HHHHHHHTTCTTCHHHHH
T ss_pred ------HHHHHHHhhCCCCHHHHH
Confidence 55555555 777665543
No 3
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=100.00 E-value=4.5e-39 Score=302.59 Aligned_cols=336 Identities=18% Similarity=0.321 Sum_probs=307.5
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHHHhccCCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHHHHHh
Q 009278 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHL 81 (538)
Q Consensus 2 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 81 (538)
++.++.+|..++..|+|++|+..|++++..+|+++.+++.+|.++...|++++|+..|++++..+|+++.++..+|.++.
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLL 82 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCHHHHHHHHHhhhhcCC---CcHHHHhhHHHHHHHHhhcccCCCCCCCCcccccccCCchhhcccCCCCCCCcccHH
Q 009278 82 GLQDYIEAVNSYKKGLDIDP---NNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQD 158 (538)
Q Consensus 82 ~~~~~~~A~~~~~~al~~~p---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (538)
..|++++|+..|+++++.+| ++..++..++.+..
T Consensus 83 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------------------------------------------- 119 (359)
T 3ieg_A 83 KQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE------------------------------------------- 119 (359)
T ss_dssp HHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-------------------------------------------
T ss_pred HcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-------------------------------------------
Confidence 99999999999999999999 88777766654422
Q ss_pred HHHHHHHhhhcCCCchhhhhchHHHHHHHHHHHhhhcCCCCCCCccccccccCCCCCCCccccccCCCCCCCCCCccccH
Q 009278 159 DFRNMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTE 238 (538)
Q Consensus 159 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (538)
T Consensus 120 -------------------------------------------------------------------------------- 119 (359)
T 3ieg_A 120 -------------------------------------------------------------------------------- 119 (359)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccch
Q 009278 239 EEKEAKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELR 318 (538)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~ 318 (538)
...+..+|.++...|++++|+.+++++++.+|.++.++..+|.++...|++++|+..+++++...|++
T Consensus 120 -----------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~- 187 (359)
T 3ieg_A 120 -----------MQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDN- 187 (359)
T ss_dssp -----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCC-
T ss_pred -----------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-
Confidence 23355678999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhHHHHHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHH-------
Q 009278 319 SDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADE------- 391 (538)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------- 391 (538)
..++..+|.++...++ +++|+..+++++.. .|++...
T Consensus 188 ------~~~~~~la~~~~~~~~----~~~A~~~~~~a~~~--------------------------~~~~~~~~~~~~~~ 231 (359)
T 3ieg_A 188 ------TEAFYKISTLYYQLGD----HELSLSEVRECLKL--------------------------DQDHKRCFAHYKQV 231 (359)
T ss_dssp ------HHHHHHHHHHHHHHTC----HHHHHHHHHHHHHH--------------------------CTTCHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHcCC----HHHHHHHHHHHHhh--------------------------CccchHHHHHHHHH
Confidence 5677788888888888 99999999999994 4444443
Q ss_pred -----HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCch----hHhHHHHHHHHhCCchhHHHHHHHHHhcCCCchHHHHH
Q 009278 392 -----EREKGNEFFKQQKYPEAIQHYTESLRRNPKDPR----TYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTR 462 (538)
Q Consensus 392 -----~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~----~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 462 (538)
...+|.++...|++++|+..|+++++..|+++. ++..+|.++...|++++|+..++++++.+|+++.++..
T Consensus 232 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 311 (359)
T 3ieg_A 232 KKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKD 311 (359)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHH
Confidence 335588999999999999999999999999874 46679999999999999999999999999999999999
Q ss_pred HHHHHHHccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhc
Q 009278 463 KGAIQFFLKEYDKALETYQEGLKHDPQNQELLDGVRRCVQQINKAG 508 (538)
Q Consensus 463 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 508 (538)
+|.++...|++++|+.+|+++++++|+++.++..++.+...+++..
T Consensus 312 ~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~ 357 (359)
T 3ieg_A 312 RAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQSQ 357 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999998887643
No 4
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-39 Score=320.05 Aligned_cols=445 Identities=17% Similarity=0.181 Sum_probs=336.5
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHHHhccCCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHHHHHh
Q 009278 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHL 81 (538)
Q Consensus 2 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 81 (538)
+++++.+|..++..|+|++|+..|++++..+| ++.++..+|.++...|++++|+..|+++++.+|+++.+++.+|.++.
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999 69999999999999999999999999999999999999999999999
Q ss_pred hccCHHHHHHHHHhhhhcCCCcHHHHhhHHHHHHHHhhcccCCCCC----------------C---CCcccccccCCc--
Q 009278 82 GLQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPP----------------A---DNPFGSAFAGPE-- 140 (538)
Q Consensus 82 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~----------------~---~~~~~~~~~~~~-- 140 (538)
..|++++|+..|++++...|.+........................ . ........+...
T Consensus 85 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSM 164 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHH
T ss_pred HHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHH
Confidence 9999999999999999999876554433322222211110000000 0 000000000000
Q ss_pred --hhhcccCCCCCCCccc-HHHHHHHHHhh-hcCCCchhhhhchHHHHHHHHHHHhhhcCCCCCCCccccccccCCCCCC
Q 009278 141 --MWAKLTADPTTRSYLD-QDDFRNMMKDI-QRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPE 216 (538)
Q Consensus 141 --~~~~~~~~~~~~~~~~-~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (538)
........+....+.. ..........+ ... +...++...+...+........ .. ....|
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~A~~~~~~~~~~~~-------~~---~~~~~- 227 (514)
T 2gw1_A 165 ASFFGIFKPELTFANYDESNEADKELMNGLSNLY------KRSPESYDKADESFTKAARLFE-------EQ---LDKNN- 227 (514)
T ss_dssp HHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHS------SCCTTHHHHHHHHHHHHHHHHH-------HH---TTTST-
T ss_pred HHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHH------hhhhccHHHHHHHHHHHHHHhh-------hh---hccCc-
Confidence 0011111111000000 00000011110 000 0012222222222221110000 00 00000
Q ss_pred CccccccCCCCCCCCCCccccHHHHHHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 009278 217 TSKEETRKPESEPEPEPMELTEEEKEAKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLE 296 (538)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 296 (538)
......+..+.++..+|.++...|++++|+..|+++++.+|. ..++..+|.++..
T Consensus 228 ------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~ 282 (514)
T 2gw1_A 228 ------------------------EDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMAD 282 (514)
T ss_dssp ------------------------TCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHT
T ss_pred ------------------------cccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHH
Confidence 000123678899999999999999999999999999999999 9999999999999
Q ss_pred hCCHHHHHHHHHHHHHccccchhhHHHHHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCCh--------hHHHhh
Q 009278 297 MGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNP--------DTLKKL 368 (538)
Q Consensus 297 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~--------~~~~~~ 368 (538)
.|++++|+..+++++...|.+ ..++..+|.++...++ +++|+..|++++...|.. .++...
T Consensus 283 ~~~~~~A~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~----~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 351 (514)
T 2gw1_A 283 RNDSTEYYNYFDKALKLDSNN-------SSVYYHRGQMNFILQN----YDQAGKDFDKAKELDPENIFPYIQLACLAYRE 351 (514)
T ss_dssp SSCCTTGGGHHHHHHTTCTTC-------THHHHHHHHHHHHTTC----TTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTT
T ss_pred CCCHHHHHHHHHHHhhcCcCC-------HHHHHHHHHHHHHhCC----HHHHHHHHHHHHHhChhhHHHHHHHHHHHHHc
Confidence 999999999999999999988 4566777777887777 999999999999988763 245677
Q ss_pred hhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCch------hHhHHHHHHHH---hCCc
Q 009278 369 NEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPR------TYSNRAACYTK---LGAM 439 (538)
Q Consensus 369 ~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~------~~~~la~~~~~---~~~~ 439 (538)
|++++|+..+.+++...|.++.++..+|.++...|++++|+..|++++...|.++. ++..+|.++.. .|++
T Consensus 352 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 431 (514)
T 2gw1_A 352 NKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENF 431 (514)
T ss_dssp TCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHH
T ss_pred CCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCH
Confidence 89999999999999999999999999999999999999999999999999988865 99999999999 9999
Q ss_pred hhHHHHHHHHHhcCCCchHHHHHHHHHHHHccCHHHHHHHHHHHhccCCCCHHHHHHHHHH
Q 009278 440 PEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDGVRRC 500 (538)
Q Consensus 440 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 500 (538)
++|+..+++++..+|+++.++..+|.++...|++++|+..|+++++++|+++.++..+...
T Consensus 432 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 492 (514)
T 2gw1_A 432 IEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITFA 492 (514)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998777544
No 5
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.7e-38 Score=319.90 Aligned_cols=433 Identities=12% Similarity=0.034 Sum_probs=360.3
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHHHhccCCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHHHHHhh
Q 009278 3 DEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLG 82 (538)
Q Consensus 3 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 82 (538)
..|...+..+.+.|++++|+..|++++...|++ ..++.+|.++...|++++|+..|++++.. |.++.++..+|.+|..
T Consensus 85 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~ 162 (597)
T 2xpi_A 85 DYLRLWRHDALMQQQYKCAAFVGEKVLDITGNP-NDAFWLAQVYCCTGDYARAKCLLTKEDLY-NRSSACRYLAAFCLVK 162 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHTTCHHHHHHHHHHTCGG-GTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCchHHHHHHHHHHhhCCCc-hHHHHHHHHHHHcCcHHHHHHHHHHHhcc-ccchhHHHHHHHHHHH
Confidence 457889999999999999999999999999954 77889999999999999999999998765 6778999999999999
Q ss_pred ccCHHHHHHHHHhhhhcC----------------CCcHHHHhhHHHHHHHHhhcccCCCCCCCCcccccccCCchhhccc
Q 009278 83 LQDYIEAVNSYKKGLDID----------------PNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLT 146 (538)
Q Consensus 83 ~~~~~~A~~~~~~al~~~----------------p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (538)
.|++++|+..|++..... |.+..++..++.++...|+.
T Consensus 163 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-------------------------- 216 (597)
T 2xpi_A 163 LYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNF-------------------------- 216 (597)
T ss_dssp TTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCH--------------------------
T ss_pred HhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCH--------------------------
Confidence 999999999999744333 33488899999999998876
Q ss_pred CCCCCCCcccHHHHHHHHHhhhcCCCchhhhhchHHHH-------HHHHH-----------------HHhhhcCCCCCCC
Q 009278 147 ADPTTRSYLDQDDFRNMMKDIQRNPNNLNLYLKDQRVM-------QALGV-----------------LLNVKFKGPTGGD 202 (538)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-------~~~~~-----------------~~~~~~~~~~~~~ 202 (538)
..+...+.+.+..+|.+...+...+... ..... +.......-....
T Consensus 217 ----------~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g 286 (597)
T 2xpi_A 217 ----------DRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHED 286 (597)
T ss_dssp ----------HHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHH
T ss_pred ----------HHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcc
Confidence 5677777777888888766544322110 00000 0000000000000
Q ss_pred ccccccccCCCCCCCccccccCCCCCCCCCCccccHHHHHHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCC
Q 009278 203 DVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKEAKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDE 282 (538)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 282 (538)
..+.++.. +..... .+.....+..+|..+...|++++|+..|+++++.+|.
T Consensus 287 ~~~~A~~~----------------------------~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 337 (597)
T 2xpi_A 287 ELRRAEDY----------------------------LSSING-LEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY 337 (597)
T ss_dssp HHHHHHHH----------------------------HHTSTT-GGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hHHHHHHH----------------------------HHHhhc-CCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcc
Confidence 00000000 000001 1356788999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCCh
Q 009278 283 DISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNP 362 (538)
Q Consensus 283 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~ 362 (538)
+..++..++.++...|++++|+..+++++...|++ ..++..+|.++...|+ +++|+..|++++...|..
T Consensus 338 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~g~----~~~A~~~~~~~~~~~~~~ 406 (597)
T 2xpi_A 338 NLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEK-------AVTWLAVGIYYLCVNK----ISEARRYFSKSSTMDPQF 406 (597)
T ss_dssp CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS-------HHHHHHHHHHHHHTTC----HHHHHHHHHHHHHHCTTC
T ss_pred cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCccc-------HHHHHHHHHHHHHhcc----HHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999999987 5667777888888888 999999999999987763
Q ss_pred --------hHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHhHHHHHHH
Q 009278 363 --------DTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYT 434 (538)
Q Consensus 363 --------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~ 434 (538)
..+...|++++|+..|++++...|.+..++..+|.++...|++++|+.+|+++++..|.++.+|..+|.++.
T Consensus 407 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 486 (597)
T 2xpi_A 407 GPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAF 486 (597)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 356778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCchhHHHHHHHHHhc------CCCc-hHHHHHHHHHHHHccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhh
Q 009278 435 KLGAMPEGLKDADKCIEL------DPTF-SKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDGVRRCVQQINKA 507 (538)
Q Consensus 435 ~~~~~~~A~~~~~~al~~------~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 507 (538)
..|++++|+.+|+++++. +|++ ..++..+|.++...|++++|+..|+++++.+|+++.++..++.++...|++
T Consensus 487 ~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 566 (597)
T 2xpi_A 487 NKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIP 566 (597)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCH
T ss_pred HhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCH
Confidence 999999999999999998 6664 789999999999999999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 009278 508 GRGELS 513 (538)
Q Consensus 508 ~~a~~~ 513 (538)
++|...
T Consensus 567 ~~A~~~ 572 (597)
T 2xpi_A 567 GLAITH 572 (597)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888744
No 6
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=100.00 E-value=4.4e-38 Score=305.47 Aligned_cols=334 Identities=18% Similarity=0.328 Sum_probs=302.7
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHHHhccCCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHHHHHh
Q 009278 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHL 81 (538)
Q Consensus 2 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 81 (538)
++.++.+|..++..|++++|+..|++++..+|.++.+++.+|.++...|++++|+..|++++..+|+++.++..+|.++.
T Consensus 26 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 105 (450)
T 2y4t_A 26 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLL 105 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCHHHHHHHHHhhhhcCCCcH---HHHhhHHHHHHHHhhcccCCCCCCCCcccccccCCchhhcccCCCCCCCcccHH
Q 009278 82 GLQDYIEAVNSYKKGLDIDPNNE---ALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQD 158 (538)
Q Consensus 82 ~~~~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (538)
..|++++|+..|+++++.+|++. .++..++.++.
T Consensus 106 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------------------------------------------- 142 (450)
T 2y4t_A 106 KQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDE------------------------------------------- 142 (450)
T ss_dssp HTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-------------------------------------------
T ss_pred HcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHH-------------------------------------------
Confidence 99999999999999999999988 76666654422
Q ss_pred HHHHHHHhhhcCCCchhhhhchHHHHHHHHHHHhhhcCCCCCCCccccccccCCCCCCCccccccCCCCCCCCCCccccH
Q 009278 159 DFRNMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTE 238 (538)
Q Consensus 159 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (538)
T Consensus 143 -------------------------------------------------------------------------------- 142 (450)
T 2y4t_A 143 -------------------------------------------------------------------------------- 142 (450)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccch
Q 009278 239 EEKEAKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELR 318 (538)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~ 318 (538)
...+..+|..+...|++++|+.+|+++++..|.++.++..+|.+|...|++++|+..|++++...|++
T Consensus 143 -----------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~- 210 (450)
T 2y4t_A 143 -----------MQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDN- 210 (450)
T ss_dssp -----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSC-
T ss_pred -----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-
Confidence 22345678899999999999999999999999999999999999999999999999999999999988
Q ss_pred hhHHHHHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHH----
Q 009278 319 SDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEERE---- 394 (538)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---- 394 (538)
..++..+|.++...++ +++|+..|++++. ..|++...+..
T Consensus 211 ------~~~~~~l~~~~~~~g~----~~~A~~~~~~~~~--------------------------~~p~~~~~~~~~~~~ 254 (450)
T 2y4t_A 211 ------TEAFYKISTLYYQLGD----HELSLSEVRECLK--------------------------LDQDHKRCFAHYKQV 254 (450)
T ss_dssp ------HHHHHHHHHHHHHTTC----HHHHHHHHHHHHH--------------------------HCTTCHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHcCC----HHHHHHHHHHHHH--------------------------hCCChHHHHHHHHHH
Confidence 5677778888888888 9999999999998 45555555444
Q ss_pred --------HHHHHHhcCChHHHHHHHHHHHhcCCCCc----hhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCchHHHHH
Q 009278 395 --------KGNEFFKQQKYPEAIQHYTESLRRNPKDP----RTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTR 462 (538)
Q Consensus 395 --------la~~~~~~~~~~~A~~~~~~al~~~~~~~----~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 462 (538)
+|.++...|++++|+.+|+++++..|.++ .++..+|.++...|++++|+..++++++.+|+++.++..
T Consensus 255 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~ 334 (450)
T 2y4t_A 255 KKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKD 334 (450)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence 49999999999999999999999999885 478999999999999999999999999999999999999
Q ss_pred HHHHHHHccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhh
Q 009278 463 KGAIQFFLKEYDKALETYQEGLKHDPQNQELLDGVRRCVQQINK 506 (538)
Q Consensus 463 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 506 (538)
+|.++...|++++|+.+|+++++++|+++.++..++.+....++
T Consensus 335 l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 378 (450)
T 2y4t_A 335 RAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQ 378 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999987666554
No 7
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=100.00 E-value=2.9e-39 Score=321.18 Aligned_cols=415 Identities=19% Similarity=0.201 Sum_probs=313.5
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHHHhccCCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHHHHHh
Q 009278 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHL 81 (538)
Q Consensus 2 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 81 (538)
++.++.+|..++..|+|++|+..|++++..+|+++.+++.+|.++..+|++++|+..|++++..+|+++.+++.+|.++.
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 104 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANE 104 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCHHHHHHHHHhhhhcCCCcHHHHhh----HHHHHHHHhhcccCCCC--------CCC-CcccccccC---Cchhhcc
Q 009278 82 GLQDYIEAVNSYKKGLDIDPNNEALKSG----LADAKAAASASFRSRSP--------PAD-NPFGSAFAG---PEMWAKL 145 (538)
Q Consensus 82 ~~~~~~~A~~~~~~al~~~p~~~~~~~~----l~~~~~~~~~~~~~~~~--------~~~-~~~~~~~~~---~~~~~~~ 145 (538)
..|++++|+..|+ ++..+|+....+.. ................. .+. ......+.. ......+
T Consensus 105 ~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (537)
T 3fp2_A 105 SLGNFTDAMFDLS-VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSV 183 (537)
T ss_dssp HHTCHHHHHHHHH-HHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTS
T ss_pred HcCCHHHHHHHHH-HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHH
Confidence 9999999999996 88888876654321 00000000000000000 000 000000000 0000000
Q ss_pred cCCCCCCCc------------------------ccHHHHHHHHHhhhcCCCchhhhhchHHHHHHHHHHHhhhcCCCCCC
Q 009278 146 TADPTTRSY------------------------LDQDDFRNMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGG 201 (538)
Q Consensus 146 ~~~~~~~~~------------------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (538)
......... ....+...+.+.+...|++...+
T Consensus 184 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~------------------------ 239 (537)
T 3fp2_A 184 NTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLR------------------------ 239 (537)
T ss_dssp CCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHH------------------------
T ss_pred hhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhh------------------------
Confidence 000000000 00112222222333333322221
Q ss_pred CccccccccCCCCCCCccccccCCCCCCCCCCccccHHHHHHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCC
Q 009278 202 DDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKEAKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDD 281 (538)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 281 (538)
...+.++..+|.++...|++++|+..|++++..+|
T Consensus 240 ---------------------------------------------~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~ 274 (537)
T 3fp2_A 240 ---------------------------------------------ENAALALCYTGIFHFLKNNLLDAQVLLQESINLHP 274 (537)
T ss_dssp ---------------------------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred ---------------------------------------------HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCC
Confidence 23466788899999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCC
Q 009278 282 EDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRN 361 (538)
Q Consensus 282 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 361 (538)
+ ..++..+|.++...|++++|+..+++++...|++ ..++..+|.++...++ +++|+..|++++...|.
T Consensus 275 ~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~----~~~A~~~~~~a~~~~~~ 342 (537)
T 3fp2_A 275 T-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEY-------PPTYYHRGQMYFILQD----YKNAKEDFQKAQSLNPE 342 (537)
T ss_dssp C-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTC----HHHHHHHHHHHHHHCTT
T ss_pred C-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCC-------HHHHHHHHHHHHhcCC----HHHHHHHHHHHHHhCCC
Confidence 9 9999999999999999999999999999999987 5677788888888888 99999999999998876
Q ss_pred h--------hHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchh------Hh
Q 009278 362 P--------DTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRT------YS 427 (538)
Q Consensus 362 ~--------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~------~~ 427 (538)
. .++...|++++|+..+.+++...|.++.++..+|.++...|++++|+..|+++++..|.++.. +.
T Consensus 343 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 422 (537)
T 3fp2_A 343 NVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLI 422 (537)
T ss_dssp CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHH
Confidence 2 356778999999999999999999999999999999999999999999999999988876554 45
Q ss_pred HHHHHHHHh----------CCchhHHHHHHHHHhcCCCchHHHHHHHHHHHHccCHHHHHHHHHHHhccCCCCHHHHHHH
Q 009278 428 NRAACYTKL----------GAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDGV 497 (538)
Q Consensus 428 ~la~~~~~~----------~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 497 (538)
.+|.++... |++++|+.+|+++++.+|+++.++..+|.++...|++++|+.+|+++++++|+++.....+
T Consensus 423 ~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 502 (537)
T 3fp2_A 423 GKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQAT 502 (537)
T ss_dssp HHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHHHH
T ss_pred HHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 557888888 9999999999999999999999999999999999999999999999999999998876544
Q ss_pred H
Q 009278 498 R 498 (538)
Q Consensus 498 ~ 498 (538)
.
T Consensus 503 ~ 503 (537)
T 3fp2_A 503 T 503 (537)
T ss_dssp H
T ss_pred h
Confidence 3
No 8
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5.2e-38 Score=316.34 Aligned_cols=444 Identities=14% Similarity=0.058 Sum_probs=351.6
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHHHhccCCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhccC----------------
Q 009278 3 DEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELK---------------- 66 (538)
Q Consensus 3 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---------------- 66 (538)
..++.+|..+...|++++|+..|++++.. |.++.++..+|.+|...|++++|+..|++.....
T Consensus 118 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (597)
T 2xpi_A 118 NDAFWLAQVYCCTGDYARAKCLLTKEDLY-NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGI 196 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHTCGG-GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSC
T ss_pred hHHHHHHHHHHHcCcHHHHHHHHHHHhcc-ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCcccccccccccccccccc
Confidence 35678999999999999999999999765 6678999999999999999999999999744333
Q ss_pred CCchHHHHHHHHHHhhccCHHHHHHHHHhhhhcCCCcHHHHhhHHHHHHHHhhcccCCCCCCCCcccccccCCchhhccc
Q 009278 67 PDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLT 146 (538)
Q Consensus 67 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (538)
|.++.+|..+|.+|...|++++|+..|+++++.+|++..++..++.++...+....... ....+..............
T Consensus 197 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~~ 274 (597)
T 2xpi_A 197 KLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLV--LKLNYSTYSKEDAAFLRSL 274 (597)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHH--HHSCTHHHHGGGHHHHHHH
T ss_pred chhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHH--HhcCCcccccchHHHHHHH
Confidence 33588999999999999999999999999999999999988877654322111100000 0000000000000000000
Q ss_pred CCCCCCCcccHHHHHHHHHhhhcC---CCchhhhhchHHHHHHHHHHHhhhcCCCCCCCccccccccCCCCCCCcccccc
Q 009278 147 ADPTTRSYLDQDDFRNMMKDIQRN---PNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETR 223 (538)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (538)
.......+...+.+....+.+... |.+...+...+..+...+.+
T Consensus 275 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------------------------------- 321 (597)
T 2xpi_A 275 YMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRF--------------------------------- 321 (597)
T ss_dssp HHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCH---------------------------------
T ss_pred HHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCH---------------------------------
Confidence 001122233344444444444332 44555555544444443322
Q ss_pred CCCCCCCCCCccccHHHHHHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHH
Q 009278 224 KPESEPEPEPMELTEEEKEAKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEEC 303 (538)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A 303 (538)
.+++..+.......|....++..++.++...|++++|+..+++++...|++..++..+|.+|...|++++|
T Consensus 322 ---------~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 392 (597)
T 2xpi_A 322 ---------IDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEA 392 (597)
T ss_dssp ---------HHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHH
T ss_pred ---------HHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHH
Confidence 22223444455555667778899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccccchhhHHHHHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCCh--------hHHHhhhhHHHHH
Q 009278 304 IKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNP--------DTLKKLNEAEKAK 375 (538)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~--------~~~~~~~~~~~a~ 375 (538)
+..|+++++..|.+ ..++..++.++...|+ +++|+..|++++...|.. ..+...|++++|+
T Consensus 393 ~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~g~----~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 461 (597)
T 2xpi_A 393 RRYFSKSSTMDPQF-------GPAWIGFAHSFAIEGE----HDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLAN 461 (597)
T ss_dssp HHHHHHHHHHCTTC-------HHHHHHHHHHHHHHTC----HHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCC----HHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999987 5667777888888888 999999999999987753 3567789999999
Q ss_pred HHHHHHHHcCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhc------CCCC-chhHhHHHHHHHHhCCchhHHHHHHH
Q 009278 376 KELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRR------NPKD-PRTYSNRAACYTKLGAMPEGLKDADK 448 (538)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~------~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~ 448 (538)
..|++++...|.++.++..+|.++...|++++|+..|+++++. +|++ ..+|..+|.++...|++++|+..+++
T Consensus 462 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 541 (597)
T 2xpi_A 462 EYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQ 541 (597)
T ss_dssp HHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999988 5554 67899999999999999999999999
Q ss_pred HHhcCCCchHHHHHHHHHHHHccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Q 009278 449 CIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDGVRRCVQ 502 (538)
Q Consensus 449 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 502 (538)
+++.+|+++.++..+|.+|...|++++|..+|+++++++|+++.++..++.++.
T Consensus 542 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 542 GLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALE 595 (597)
T ss_dssp HHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred HHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999988764
No 9
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.2e-36 Score=295.12 Aligned_cols=424 Identities=17% Similarity=0.128 Sum_probs=334.7
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHHHHHhhccCHHHHHHHHHhhhhcCCCcHHHHhhHHHHH
Q 009278 35 NHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNEALKSGLADAK 114 (538)
Q Consensus 35 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 114 (538)
.+..++.+|.+++..|++++|+..|++++..+| ++.++..+|.++...|++++|+..|+++++.+|++..++..++.++
T Consensus 5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 5 YALALKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHH
Confidence 468899999999999999999999999999999 6899999999999999999999999999999999999999999999
Q ss_pred HHHhhcccCCCCCCCCcccccccCCchhhcccCCCCCCCcccHHHHHHHHHhhhcCCCchhhhhchHHHHHHHHHHHhhh
Q 009278 115 AAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRNMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVK 194 (538)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (538)
...|+. ..+...+.+.+...|.+.....................
T Consensus 84 ~~~g~~------------------------------------~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (514)
T 2gw1_A 84 EGLGKF------------------------------------ADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLK 127 (514)
T ss_dssp HHTTCH------------------------------------HHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHT
T ss_pred HHHhhH------------------------------------HHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHH
Confidence 999877 56777777777777765444332111111111111110
Q ss_pred cCC---CCCCCc-------cccc-cccCCCCCCCccccccCCCCCCCCCCccccHHHHHHHHhHHHHHHHHHHHHHHHh-
Q 009278 195 FKG---PTGGDD-------VEMQ-DEDAPKGPETSKEETRKPESEPEPEPMELTEEEKEAKERKEKALKEKEAGNAAYK- 262 (538)
Q Consensus 195 ~~~---~~~~~~-------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 262 (538)
... ...... .... ....+..|....................+. .|.....+...|..++.
T Consensus 128 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~ 199 (514)
T 2gw1_A 128 EKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYD--------ESNEADKELMNGLSNLYK 199 (514)
T ss_dssp TC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCC--------SSCHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhc--------CCcHHHHHHHHHHHHHHh
Confidence 000 000000 0000 000000000000000000000000000000 13457888999998887
Q ss_pred --cccHHHHHHHHHHHHh-----h--C-------CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHHH
Q 009278 263 --KKEFEKAIEHYSSALE-----L--D-------DEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIAR 326 (538)
Q Consensus 263 --~~~~~~A~~~~~~al~-----~--~-------p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 326 (538)
.|++++|+.+|+++++ . + |.++.++..+|.++...|++++|+..+++++...|+ ..
T Consensus 200 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--------~~ 271 (514)
T 2gw1_A 200 RSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--------VN 271 (514)
T ss_dssp CCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--------HH
T ss_pred hhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--------HH
Confidence 9999999999999999 5 3 555788999999999999999999999999999987 35
Q ss_pred HHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCCh--------hHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHH
Q 009278 327 ALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNP--------DTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNE 398 (538)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~ 398 (538)
++..+|.++...++ +++|+..+++++...|.. .++...|++++|+..+.+++...|.++.++..+|.+
T Consensus 272 ~~~~l~~~~~~~~~----~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 347 (514)
T 2gw1_A 272 SYIYMALIMADRND----STEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACL 347 (514)
T ss_dssp HHHHHHHHHHTSSC----CTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHH
T ss_pred HHHHHHHHHHHCCC----HHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHH
Confidence 56777888888888 999999999999988763 356778899999999999999999999999999999
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCchH------HHHHHHHHHHH---
Q 009278 399 FFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSK------GYTRKGAIQFF--- 469 (538)
Q Consensus 399 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~------~~~~l~~~~~~--- 469 (538)
+...|++++|+..|+++++..|.++.++..+|.++...|++++|+.++++++...|+++. ++..+|.++..
T Consensus 348 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 427 (514)
T 2gw1_A 348 AYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPT 427 (514)
T ss_dssp TTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCC
T ss_pred HHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhh
Confidence 999999999999999999999999999999999999999999999999999999988865 99999999999
Q ss_pred ccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhccCCCChH
Q 009278 470 LKEYDKALETYQEGLKHDPQNQELLDGVRRCVQQINKAGRGELSPE 515 (538)
Q Consensus 470 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~ 515 (538)
.|++++|+..|++++..+|+++.++..++.++...|++++|...++
T Consensus 428 ~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 473 (514)
T 2gw1_A 428 VENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFE 473 (514)
T ss_dssp TTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 9999999999999999999999999999999999999988874433
No 10
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.3e-35 Score=289.82 Aligned_cols=382 Identities=15% Similarity=0.058 Sum_probs=287.5
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHHHhcc---------CCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhccC------
Q 009278 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAISL---------SPDNHVLYSNRSAAHASLHNYADALADAKKTVELK------ 66 (538)
Q Consensus 2 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~---------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------ 66 (538)
+..|..+|.++...|++++|+..|++++++ +|....+|.++|.+|..+|++++|+.++++++.+.
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 456778999999999999999999999875 56677889999999999999999999999999863
Q ss_pred --CCchHHHHHHHHHHhhc--cCHHHHHHHHHhhhhcCCCcHHHHhhHHHHHHHHhhcccCCCCCCCCcccccccCCchh
Q 009278 67 --PDWSKGYSRLGAAHLGL--QDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMW 142 (538)
Q Consensus 67 --p~~~~~~~~la~~~~~~--~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (538)
+..+.++..+|.++... +++++|+.+|+++++++|++++++..++.+....+...+.
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~------------------- 191 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPS------------------- 191 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCC-------------------
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHH-------------------
Confidence 34567888888777665 5799999999999999999999999999887776554211
Q ss_pred hcccCCCCCCCcccHHHHHHHHHhhhcCCCchhhhhchHHHHHHHHHHHhhhcCCCCCCCccccccccCCCCCCCccccc
Q 009278 143 AKLTADPTTRSYLDQDDFRNMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEET 222 (538)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (538)
..++..+.+++..+|.+..
T Consensus 192 --------------~~al~~~~~al~l~p~~~~----------------------------------------------- 210 (472)
T 4g1t_A 192 --------------QNAIDPLRQAIRLNPDNQY----------------------------------------------- 210 (472)
T ss_dssp --------------CCTHHHHHHHHHHCSSCHH-----------------------------------------------
T ss_pred --------------HHHHHHHHHHhhcCCcchH-----------------------------------------------
Confidence 2234455555555655433
Q ss_pred cCCCCCCCCCCccccHHHHHHHHhHHHHHHHHHHHHH----HHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhC
Q 009278 223 RKPESEPEPEPMELTEEEKEAKERKEKALKEKEAGNA----AYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMG 298 (538)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 298 (538)
++..+|.. +...+++++|+.++++++..+|.++.++..+|.+|...|
T Consensus 211 -----------------------------~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~ 261 (472)
T 4g1t_A 211 -----------------------------LKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKD 261 (472)
T ss_dssp -----------------------------HHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTT
T ss_pred -----------------------------HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcC
Confidence 33334433 345678899999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHccccchhhHHHHHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHH
Q 009278 299 KYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKEL 378 (538)
Q Consensus 299 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 378 (538)
++++|+..++++++..|++ +.++..+|.++..... ...+.... .........+.++.|+..+
T Consensus 262 ~~~~A~~~~~~al~~~p~~-------~~~~~~lg~~y~~~~~----~~~~~~~~-------~~~~~~~~~~~~~~A~~~~ 323 (472)
T 4g1t_A 262 EPDKAIELLKKALEYIPNN-------AYLHCQIGCCYRAKVF----QVMNLREN-------GMYGKRKLLELIGHAVAHL 323 (472)
T ss_dssp CHHHHHHHHHHHHHHSTTC-------HHHHHHHHHHHHHHHH----HHHHC-------------CHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhCCCh-------HHHHHHHHHHHHHHHH----HhhhHHHH-------HHHHHHHHHhhHHHHHHHH
Confidence 9999999999999999998 4555666665543332 22211111 1112233445667788888
Q ss_pred HHHHHcCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCch---hHhHHHHH-HHHhCCchhHHHHHHHHHhcCC
Q 009278 379 EQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPR---TYSNRAAC-YTKLGAMPEGLKDADKCIELDP 454 (538)
Q Consensus 379 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~---~~~~la~~-~~~~~~~~~A~~~~~~al~~~p 454 (538)
++++..+|....++..+|.++...|++++|+.+|++++++.|.+.. ++..+|.+ +...|++++|+.+|+++++++|
T Consensus 324 ~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~ 403 (472)
T 4g1t_A 324 KKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQ 403 (472)
T ss_dssp HHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCC
T ss_pred HHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc
Confidence 8888899999999999999999999999999999999999886543 45666655 4578999999999999999999
Q ss_pred CchHHHHHHHHHHHHccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhccCCCChHHHHHH
Q 009278 455 TFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDGVRRCVQQINKAGRGELSPEELKER 520 (538)
Q Consensus 455 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 520 (538)
++.... +....+...+++++..+|+++.++..+|.++...|++++|..+++++.+.
T Consensus 404 ~~~~~~----------~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~ 459 (472)
T 4g1t_A 404 KSREKE----------KMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLES 459 (472)
T ss_dssp CCHHHH----------HHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------
T ss_pred ccHHHH----------HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 875432 23345567788899999999999999999999999999999998777664
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=100.00 E-value=7.5e-35 Score=282.66 Aligned_cols=326 Identities=13% Similarity=0.109 Sum_probs=280.8
Q ss_pred CCHHHHHHHHHHHhccCCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHHHHHhhccCHHHHHHHHHh
Q 009278 16 GDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKK 95 (538)
Q Consensus 16 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~ 95 (538)
+....+...+.+++..+|.++.+++.+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|++
T Consensus 6 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 85 (450)
T 2y4t_A 6 HHSSGVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTK 85 (450)
T ss_dssp -----------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cccccccccccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 34456778889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCcHHHHhhHHHHHHHHhhcccCCCCCCCCcccccccCCchhhcccCCCCCCCcccHHHHHHHHHhhhcCCCchh
Q 009278 96 GLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRNMMKDIQRNPNNLN 175 (538)
Q Consensus 96 al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 175 (538)
+++.+|++..++
T Consensus 86 al~~~p~~~~~~-------------------------------------------------------------------- 97 (450)
T 2y4t_A 86 VIQLKMDFTAAR-------------------------------------------------------------------- 97 (450)
T ss_dssp HHHHCTTCHHHH--------------------------------------------------------------------
T ss_pred HHhcCCCcHHHH--------------------------------------------------------------------
Confidence 999998875543
Q ss_pred hhhchHHHHHHHHHHHhhhcCCCCCCCccccccccCCCCCCCccccccCCCCCCCCCCccccHHHHHHHHhHHHHHHHHH
Q 009278 176 LYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKEAKERKEKALKEKE 255 (538)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (538)
..
T Consensus 98 ------------------------------------------------------------------------------~~ 99 (450)
T 2y4t_A 98 ------------------------------------------------------------------------------LQ 99 (450)
T ss_dssp ------------------------------------------------------------------------------HH
T ss_pred ------------------------------------------------------------------------------HH
Confidence 44
Q ss_pred HHHHHHhcccHHHHHHHHHHHHhhCCCCH---HHHHHH------------HHHHHHhCCHHHHHHHHHHHHHccccchhh
Q 009278 256 AGNAAYKKKEFEKAIEHYSSALELDDEDI---SYLTNR------------AAVYLEMGKYEECIKDCDKAVERGRELRSD 320 (538)
Q Consensus 256 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~l------------a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 320 (538)
+|.++...|++++|+..|+++++.+|++. .++..+ |.++...|++++|+..+++++...|.+
T Consensus 100 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~--- 176 (450)
T 2y4t_A 100 RGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWD--- 176 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC---
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---
Confidence 57778888999999999999999999988 776655 667999999999999999999999987
Q ss_pred HHHHHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHH
Q 009278 321 FKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFF 400 (538)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~ 400 (538)
..++..+|.++...++ +++|+..|++++. .+|.++.++..+|.++.
T Consensus 177 ----~~~~~~l~~~~~~~g~----~~~A~~~~~~~~~--------------------------~~~~~~~~~~~l~~~~~ 222 (450)
T 2y4t_A 177 ----AELRELRAECFIKEGE----PRKAISDLKAASK--------------------------LKNDNTEAFYKISTLYY 222 (450)
T ss_dssp ----HHHHHHHHHHHHHTTC----GGGGHHHHHHHHH--------------------------HHCSCHHHHHHHHHHHH
T ss_pred ----hHHHHHHHHHHHHCCC----HHHHHHHHHHHHH--------------------------hCCCCHHHHHHHHHHHH
Confidence 5677778888888888 9999999999998 78889999999999999
Q ss_pred hcCChHHHHHHHHHHHhcCCCCchhHhHH------------HHHHHHhCCchhHHHHHHHHHhcCCCchH----HHHHHH
Q 009278 401 KQQKYPEAIQHYTESLRRNPKDPRTYSNR------------AACYTKLGAMPEGLKDADKCIELDPTFSK----GYTRKG 464 (538)
Q Consensus 401 ~~~~~~~A~~~~~~al~~~~~~~~~~~~l------------a~~~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~l~ 464 (538)
..|++++|+..|++++...|++...+..+ |.++...|++++|+.+|+++++..|+++. .+..+|
T Consensus 223 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~ 302 (450)
T 2y4t_A 223 QLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERIC 302 (450)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 99999999999999999999998887666 99999999999999999999999999854 789999
Q ss_pred HHHHHccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhccCCCChHHHHHHHHhccC-Cchhh
Q 009278 465 AIQFFLKEYDKALETYQEGLKHDPQNQELLDGVRRCVQQINKAGRGELSPEELKERQAKGMQ-DPKFR 531 (538)
Q Consensus 465 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~p~~~ 531 (538)
.++...|++++|+..+++++.++|+++.++..++.++...|++++|. +.+++++. +|+..
T Consensus 303 ~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~-------~~~~~al~~~p~~~ 363 (450)
T 2y4t_A 303 HCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAI-------QDYETAQEHNENDQ 363 (450)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH-------HHHHHHHTTSSSCH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHH-------HHHHHHHHhCcchH
Confidence 99999999999999999999999999999999999999999998887 44444444 45443
No 12
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=100.00 E-value=4.1e-34 Score=268.68 Aligned_cols=309 Identities=14% Similarity=0.129 Sum_probs=279.1
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHHHHHhhccCHHHHHHHHHhhhhcCCCcHHHHhhHHHHH
Q 009278 35 NHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNEALKSGLADAK 114 (538)
Q Consensus 35 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 114 (538)
++..++.+|.++...|++++|+..|++++..+|+++.+++.+|.++...|++++|+..|+++++.+|++..++
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~------- 74 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAAR------- 74 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHH-------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHH-------
Confidence 5788999999999999999999999999999999999999999999999999999999999999998876543
Q ss_pred HHHhhcccCCCCCCCCcccccccCCchhhcccCCCCCCCcccHHHHHHHHHhhhcCCCchhhhhchHHHHHHHHHHHhhh
Q 009278 115 AAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRNMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVK 194 (538)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (538)
T Consensus 75 -------------------------------------------------------------------------------- 74 (359)
T 3ieg_A 75 -------------------------------------------------------------------------------- 74 (359)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCCccccccccCCCCCCCccccccCCCCCCCCCCccccHHHHHHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHH
Q 009278 195 FKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKEAKERKEKALKEKEAGNAAYKKKEFEKAIEHYS 274 (538)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 274 (538)
..+|.++...|++++|+..|+
T Consensus 75 -----------------------------------------------------------~~l~~~~~~~~~~~~A~~~~~ 95 (359)
T 3ieg_A 75 -----------------------------------------------------------LQRGHLLLKQGKLDEAEDDFK 95 (359)
T ss_dssp -----------------------------------------------------------HHHHHHHHHHTCHHHHHHHHH
T ss_pred -----------------------------------------------------------HHHHHHHHHcCChHHHHHHHH
Confidence 445777888899999999999
Q ss_pred HHHhhCC---CCHHHHHHH------------HHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHHHHHHHhHHHHHHhh
Q 009278 275 SALELDD---EDISYLTNR------------AAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMA 339 (538)
Q Consensus 275 ~al~~~p---~~~~~~~~l------------a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (538)
++++.+| +++.++..+ |.++...|++++|+..+++++...|++ ..++..+|.++...+
T Consensus 96 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~ 168 (359)
T 3ieg_A 96 KVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWD-------AELRELRAECFIKEG 168 (359)
T ss_dssp HHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTT
T ss_pred HHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc-------hHHHHHHHHHHHHCC
Confidence 9999999 888888777 799999999999999999999999988 567777888888888
Q ss_pred hcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 009278 340 KCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRN 419 (538)
Q Consensus 340 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 419 (538)
+ +++|+..+++++. ..|.++.++..+|.++...|++++|+..|+++++..
T Consensus 169 ~----~~~A~~~~~~~~~--------------------------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 218 (359)
T 3ieg_A 169 E----PRKAISDLKAASK--------------------------LKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD 218 (359)
T ss_dssp C----HHHHHHHHHHHHT--------------------------TCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred C----HHHHHHHHHHHHH--------------------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 8 9999999999998 789999999999999999999999999999999999
Q ss_pred CCCchhHh------------HHHHHHHHhCCchhHHHHHHHHHhcCCCchH----HHHHHHHHHHHccCHHHHHHHHHHH
Q 009278 420 PKDPRTYS------------NRAACYTKLGAMPEGLKDADKCIELDPTFSK----GYTRKGAIQFFLKEYDKALETYQEG 483 (538)
Q Consensus 420 ~~~~~~~~------------~la~~~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~l~~~~~~~g~~~~A~~~~~~a 483 (538)
|+++.++. .+|.++...|++++|+..++++++..|+++. ++..+|.++...|++++|+..|+++
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 298 (359)
T 3ieg_A 219 QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEV 298 (359)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 99887654 4488899999999999999999999999874 4667999999999999999999999
Q ss_pred hccCCCCHHHHHHHHHHHHHhhhhccCCCChHHHHHHHHhccC-Cchhhhh
Q 009278 484 LKHDPQNQELLDGVRRCVQQINKAGRGELSPEELKERQAKGMQ-DPKFRTY 533 (538)
Q Consensus 484 l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~p~~~~~ 533 (538)
++.+|+++.++..++.++...|++++|. +.++++.. +|+...+
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~g~~~~A~-------~~~~~a~~~~p~~~~~ 342 (359)
T 3ieg_A 299 LQMEPDNVNALKDRAEAYLIEEMYDEAI-------QDYEAAQEHNENDQQI 342 (359)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHH-------HHHHHHHTTCTTCHHH
T ss_pred HHhCcccHHHHHHHHHHHHHcCCHHHHH-------HHHHHHHhcCCCChHH
Confidence 9999999999999999999999988887 55555555 6655443
No 13
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=100.00 E-value=2.3e-34 Score=267.14 Aligned_cols=300 Identities=15% Similarity=0.112 Sum_probs=267.0
Q ss_pred HHHHhccCCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHHHHHhhccCHHHHHHHHHhhhhcCCCcH
Q 009278 25 FTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNE 104 (538)
Q Consensus 25 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 104 (538)
....+...|.++.++..+|.+++..|++++|+..|++++..+|.+..++..++.++...|++++|+..++++++.+|+++
T Consensus 11 ~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 90 (330)
T 3hym_B 11 IPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNP 90 (330)
T ss_dssp ---------CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST
T ss_pred hHHHHhhchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCH
Confidence 44556667888999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred HHHhhHHHHHHHHhhcccCCCCCCCCcccccccCCchhhcccCCCCCCCcccHHHHHHHHHhhhcCCCchhhhhchHHHH
Q 009278 105 ALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRNMMKDIQRNPNNLNLYLKDQRVM 184 (538)
Q Consensus 105 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 184 (538)
.++.
T Consensus 91 ~~~~---------------------------------------------------------------------------- 94 (330)
T 3hym_B 91 VSWF---------------------------------------------------------------------------- 94 (330)
T ss_dssp HHHH----------------------------------------------------------------------------
T ss_pred HHHH----------------------------------------------------------------------------
Confidence 5543
Q ss_pred HHHHHHHhhhcCCCCCCCccccccccCCCCCCCccccccCCCCCCCCCCccccHHHHHHHHhHHHHHHHHHHHHHHHhcc
Q 009278 185 QALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKEAKERKEKALKEKEAGNAAYKKK 264 (538)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (538)
.+|.++...|
T Consensus 95 ----------------------------------------------------------------------~l~~~~~~~~ 104 (330)
T 3hym_B 95 ----------------------------------------------------------------------AVGCYYLMVG 104 (330)
T ss_dssp ----------------------------------------------------------------------HHHHHHHHSC
T ss_pred ----------------------------------------------------------------------HHHHHHHHhh
Confidence 4466777788
Q ss_pred -cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHHHHHHHhHHHHHHhhhccc
Q 009278 265 -EFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSK 343 (538)
Q Consensus 265 -~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (538)
++++|+.+|++++..+|.++.++..+|.++...|++++|+..+++++...|++ ...+..+|.++...++
T Consensus 105 ~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~l~~~~~~~~~--- 174 (330)
T 3hym_B 105 HKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGC-------HLPMLYIGLEYGLTNN--- 174 (330)
T ss_dssp SCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTC-------SHHHHHHHHHHHHTTC---
T ss_pred hhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcccc-------HHHHHHHHHHHHHHhh---
Confidence 99999999999999999999999999999999999999999999999999987 3455567777777777
Q ss_pred ChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhcC----
Q 009278 344 DYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRN---- 419 (538)
Q Consensus 344 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~---- 419 (538)
+++|+..+++++. ..|.++.++..+|.++...|++++|+..+++++...
T Consensus 175 -~~~A~~~~~~al~--------------------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 227 (330)
T 3hym_B 175 -SKLAERFFSQALS--------------------------IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIG 227 (330)
T ss_dssp -HHHHHHHHHHHHT--------------------------TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTS
T ss_pred -HHHHHHHHHHHHH--------------------------hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhcc
Confidence 9999999999998 788899999999999999999999999999999876
Q ss_pred -----CCCchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCchHHHHHHHHHHHHccCHHHHHHHHHHHhccCCCCHHHH
Q 009278 420 -----PKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELL 494 (538)
Q Consensus 420 -----~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 494 (538)
|..+.++..+|.++...|++++|+.+++++++.+|+++.++..+|.++...|++++|+.+|+++++++|+++.++
T Consensus 228 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 307 (330)
T 3hym_B 228 NEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSV 307 (330)
T ss_dssp CSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHH
T ss_pred ccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHH
Confidence 666789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH-Hhhhh
Q 009278 495 DGVRRCVQ-QINKA 507 (538)
Q Consensus 495 ~~l~~~~~-~~~~~ 507 (538)
..++.++. ..|+.
T Consensus 308 ~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 308 TMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHTTTTC-
T ss_pred HHHHHHHHHHhCch
Confidence 99999984 55544
No 14
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=100.00 E-value=4e-34 Score=284.17 Aligned_cols=342 Identities=16% Similarity=0.170 Sum_probs=265.4
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHHHhccCCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHH--------
Q 009278 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGY-------- 73 (538)
Q Consensus 2 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-------- 73 (538)
+..+..+|.+++..|++++|+..|++++..+|+++.+++.+|.++..+|++++|+..|+ ++..+|+....+
T Consensus 59 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~~~~~ 137 (537)
T 3fp2_A 59 PVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLS-VLSLNGDFDGASIEPMLERN 137 (537)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH-HHC-----------CHHHHH
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHH-HHhcCCCCChHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999995 777777644321
Q ss_pred ------------------------------------------------------------HHHHHH--------HhhccC
Q 009278 74 ------------------------------------------------------------SRLGAA--------HLGLQD 85 (538)
Q Consensus 74 ------------------------------------------------------------~~la~~--------~~~~~~ 85 (538)
..++.+ ....|+
T Consensus 138 ~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~ 217 (537)
T 3fp2_A 138 LNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDL 217 (537)
T ss_dssp HHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 222222 223358
Q ss_pred HHHHHHHHHhhhhcCCCcHHHHhhHHHHHHHHhhcccCCCCCCCCcccccccCCchhhcccCCCCCCCcccHHHHHHHHH
Q 009278 86 YIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRNMMK 165 (538)
Q Consensus 86 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (538)
+++|+..|+++++.+|+++..+..++.++...|...... .....+...+.+
T Consensus 218 ~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~-----------------------------~~~~~A~~~~~~ 268 (537)
T 3fp2_A 218 LTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLK-----------------------------NNLLDAQVLLQE 268 (537)
T ss_dssp HHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHT-----------------------------TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhc-----------------------------ccHHHHHHHHHH
Confidence 999999999999999999887766666555554321000 000222233333
Q ss_pred hhhcCCCchhhhhchHHHHHHHHHHHhhhcCCCCCCCccccccccCCCCCCCccccccCCCCCCCCCCccccHHHHHHHH
Q 009278 166 DIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKEAKE 245 (538)
Q Consensus 166 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (538)
.+..
T Consensus 269 ~~~~---------------------------------------------------------------------------- 272 (537)
T 3fp2_A 269 SINL---------------------------------------------------------------------------- 272 (537)
T ss_dssp HHHH----------------------------------------------------------------------------
T ss_pred HHhc----------------------------------------------------------------------------
Confidence 3333
Q ss_pred hHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHH
Q 009278 246 RKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIA 325 (538)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 325 (538)
.|. ..++..+|.++...|++++|+.+|+++++.+|+++.++..+|.++...|++++|+..+++++...|++ .
T Consensus 273 ~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-------~ 344 (537)
T 3fp2_A 273 HPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPEN-------V 344 (537)
T ss_dssp CCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------S
T ss_pred CCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC-------H
Confidence 333 55677788888889999999999999999999999999999999999999999999999999988887 3
Q ss_pred HHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCCh--------hHHHhhhhHHHHHHHHHHHHHcCCCchH------H
Q 009278 326 RALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNP--------DTLKKLNEAEKAKKELEQQEIFDPKIAD------E 391 (538)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~ 391 (538)
.++..+|.++...++ +++|+..+++++...|.. .++...|++++|+..+++++...|.... .
T Consensus 345 ~~~~~la~~~~~~g~----~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 420 (537)
T 3fp2_A 345 YPYIQLACLLYKQGK----FTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGP 420 (537)
T ss_dssp HHHHHHHHHHHHTTC----HHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHH
T ss_pred HHHHHHHHHHHHcCC----HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHH
Confidence 556667777777777 999999999998887763 3566778889999999998888776543 3
Q ss_pred HHHHHHHHHhc----------CChHHHHHHHHHHHhcCCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCchHHHH
Q 009278 392 EREKGNEFFKQ----------QKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYT 461 (538)
Q Consensus 392 ~~~la~~~~~~----------~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 461 (538)
+..+|.++... |++++|+..|+++++.+|+++.++..+|.++...|++++|+.+|+++++++|+.+....
T Consensus 421 ~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 421 LIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQ 500 (537)
T ss_dssp HHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHH
T ss_pred HHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence 56678899998 99999999999999999999999999999999999999999999999999999887644
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.3e-33 Score=262.13 Aligned_cols=298 Identities=14% Similarity=0.117 Sum_probs=269.6
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHHHhccCCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHHHHHhh
Q 009278 3 DEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLG 82 (538)
Q Consensus 3 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 82 (538)
+.++.+|..++..|+|++|+..|++++..+|.++.++..++.++...|++++|+..+++++..+|+++.++..+|.++..
T Consensus 23 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 102 (330)
T 3hym_B 23 DVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLM 102 (330)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cc-CHHHHHHHHHhhhhcCCCcHHHHhhHHHHHHHHhhcccCCCCCCCCcccccccCCchhhcccCCCCCCCcccHHHHH
Q 009278 83 LQ-DYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFR 161 (538)
Q Consensus 83 ~~-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (538)
.| ++++|+..|+++++.+|++..++
T Consensus 103 ~~~~~~~A~~~~~~a~~~~~~~~~~~------------------------------------------------------ 128 (330)
T 3hym_B 103 VGHKNEHARRYLSKATTLEKTYGPAW------------------------------------------------------ 128 (330)
T ss_dssp SCSCHHHHHHHHHHHHTTCTTCTHHH------------------------------------------------------
T ss_pred hhhhHHHHHHHHHHHHHhCCccHHHH------------------------------------------------------
Confidence 99 99999999999999999876554
Q ss_pred HHHHhhhcCCCchhhhhchHHHHHHHHHHHhhhcCCCCCCCccccccccCCCCCCCccccccCCCCCCCCCCccccHHHH
Q 009278 162 NMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEK 241 (538)
Q Consensus 162 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (538)
T Consensus 129 -------------------------------------------------------------------------------- 128 (330)
T 3hym_B 129 -------------------------------------------------------------------------------- 128 (330)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhH
Q 009278 242 EAKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDF 321 (538)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 321 (538)
..+|.++...|++++|+..|+++++..|.+..++..+|.++...|++++|+..+++++...|++
T Consensus 129 ------------~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~---- 192 (330)
T 3hym_B 129 ------------IAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPED---- 192 (330)
T ss_dssp ------------HHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC----
T ss_pred ------------HHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCC----
Confidence 3456777888999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHh
Q 009278 322 KMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFK 401 (538)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~ 401 (538)
..++..+|.++...++ +++|+..+++++...+.... ....|..+.++..+|.++..
T Consensus 193 ---~~~~~~l~~~~~~~~~----~~~A~~~~~~a~~~~~~~~~-----------------~~~~~~~~~~~~~la~~~~~ 248 (330)
T 3hym_B 193 ---PFVMHEVGVVAFQNGE----WKTAEKWFLDALEKIKAIGN-----------------EVTVDKWEPLLNNLGHVCRK 248 (330)
T ss_dssp ---HHHHHHHHHHHHHTTC----HHHHHHHHHHHHHHHTTTSC-----------------SCTTTTCCHHHHHHHHHHHH
T ss_pred ---hHHHHHHHHHHHHccc----HHHHHHHHHHHHHHhhhccc-----------------cccccHHHHHHHHHHHHHHH
Confidence 5677778888888888 99999999999985332100 00126678899999999999
Q ss_pred cCChHHHHHHHHHHHhcCCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCchHHHHHHHHHH-HHccCHH
Q 009278 402 QQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQ-FFLKEYD 474 (538)
Q Consensus 402 ~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~-~~~g~~~ 474 (538)
.|++++|+.+|+++++..|+++.++..+|.++...|++++|+.+|+++++++|+++.++..+|.++ ...|+.+
T Consensus 249 ~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 249 LKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred hcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 999999999999999999999999999999999999999999999999999999999999999998 4566653
No 16
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=100.00 E-value=7.9e-34 Score=267.79 Aligned_cols=325 Identities=15% Similarity=0.158 Sum_probs=251.9
Q ss_pred hcCCHHHHHHHHHHHhccCCcchHHHHHHHHHHHhcCCHHHHHH-HHHHHhccCCCch----HHHHHHHHHHhhccCHHH
Q 009278 14 SSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALA-DAKKTVELKPDWS----KGYSRLGAAHLGLQDYIE 88 (538)
Q Consensus 14 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~-~~~~al~~~p~~~----~~~~~la~~~~~~~~~~~ 88 (538)
..+.|+.+...|+.+...+|. ++..+|+|++|+. .|++++.+.|+++ ..++.+|.++...|++++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 82 (368)
T 1fch_A 13 DVDFWDKLQAELEEMAKRDAE----------AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPN 82 (368)
T ss_dssp -------------------------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHH
T ss_pred CcccHHHHHHHHHHHHcCCch----------hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHH
Confidence 344455555555555444442 5667799999999 9999999998874 568999999999999999
Q ss_pred HHHHHHhhhhcCCCcHHHHhhHHHHHHHHhhcccCCCCCCCCcccccccCCchhhcccCCCCCCCcccHHHHHHHHHhhh
Q 009278 89 AVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRNMMKDIQ 168 (538)
Q Consensus 89 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 168 (538)
|+..|+++++.+|++..++
T Consensus 83 A~~~~~~al~~~p~~~~~~------------------------------------------------------------- 101 (368)
T 1fch_A 83 AVLLFEAAVQQDPKHMEAW------------------------------------------------------------- 101 (368)
T ss_dssp HHHHHHHHHHSCTTCHHHH-------------------------------------------------------------
T ss_pred HHHHHHHHHHhCCCCHHHH-------------------------------------------------------------
Confidence 9999999999998876543
Q ss_pred cCCCchhhhhchHHHHHHHHHHHhhhcCCCCCCCccccccccCCCCCCCccccccCCCCCCCCCCccccHHHHHHHHhHH
Q 009278 169 RNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKEAKERKE 248 (538)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (538)
T Consensus 102 -------------------------------------------------------------------------------- 101 (368)
T 1fch_A 102 -------------------------------------------------------------------------------- 101 (368)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHH----
Q 009278 249 KALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMI---- 324 (538)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~---- 324 (538)
..+|.++...|++++|+.+|+++++.+|+++.++..+|.++...|++++|+..+++++...|++...+...
T Consensus 102 -----~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (368)
T 1fch_A 102 -----QYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGA 176 (368)
T ss_dssp -----HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC------
T ss_pred -----HHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHh
Confidence 34577788889999999999999999999999999999999999999999999999999999875543211
Q ss_pred -----HHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCC--chHHHHHHHH
Q 009278 325 -----ARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPK--IADEEREKGN 397 (538)
Q Consensus 325 -----~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~la~ 397 (538)
...+..++.++ ..++ +++|+..|++++. .+|. .+.++..+|.
T Consensus 177 ~~~~~~~~~~~~~~~~-~~~~----~~~A~~~~~~a~~--------------------------~~p~~~~~~~~~~l~~ 225 (368)
T 1fch_A 177 GGAGLGPSKRILGSLL-SDSL----FLEVKELFLAAVR--------------------------LDPTSIDPDVQCGLGV 225 (368)
T ss_dssp ---------CTTHHHH-HHHH----HHHHHHHHHHHHH--------------------------HSTTSCCHHHHHHHHH
T ss_pred hhhcccHHHHHHHHHh-hccc----HHHHHHHHHHHHH--------------------------hCcCcccHHHHHHHHH
Confidence 01111233333 4444 5666666555555 8888 8899999999
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCchHHHHHHHHHHHHccCHHHHH
Q 009278 398 EFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKAL 477 (538)
Q Consensus 398 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 477 (538)
++...|++++|+..|++++...|.++.++..+|.++...|++++|+.+|+++++.+|+++.++..+|.++...|++++|+
T Consensus 226 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~ 305 (368)
T 1fch_A 226 LFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAV 305 (368)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCC-----------HHHHHHHHHHHHHhhhhccCCCChHHHHHHHHhcc
Q 009278 478 ETYQEGLKHDPQN-----------QELLDGVRRCVQQINKAGRGELSPEELKERQAKGM 525 (538)
Q Consensus 478 ~~~~~al~~~p~~-----------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 525 (538)
.+|++++.+.|++ ..++..++.++..+|+.++|...+.+..+.+.+..
T Consensus 306 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~ 364 (368)
T 1fch_A 306 EHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTLLTMF 364 (368)
T ss_dssp HHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHHHHHHT
T ss_pred HHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHHHHHhc
Confidence 9999999999988 89999999999999999999877666666655543
No 17
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=100.00 E-value=2.7e-33 Score=264.17 Aligned_cols=295 Identities=14% Similarity=0.130 Sum_probs=257.9
Q ss_pred HHHhhcCCHHHHHH-HHHHHhccCCcch----HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHHHHHhhcc
Q 009278 10 NAAFSSGDYEAAVR-HFTEAISLSPDNH----VLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQ 84 (538)
Q Consensus 10 ~~~~~~g~~~~A~~-~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 84 (538)
..+...|+|++|+. .|++++...|.++ ..++.+|.++...|++++|+..|++++..+|+++.++..+|.++...|
T Consensus 33 ~~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 112 (368)
T 1fch_A 33 EAHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENE 112 (368)
T ss_dssp -------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTT
T ss_pred hhhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCc
Confidence 36677899999999 9999999998874 679999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHhhhhcCCCcHHHHhhHHHHHHHHhhcccCCCCCCCCcccccccCCchhhcccCCCCCCCcccHHHHHHHH
Q 009278 85 DYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRNMM 164 (538)
Q Consensus 85 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (538)
++++|+..|+++++.+|++..++
T Consensus 113 ~~~~A~~~~~~al~~~~~~~~~~--------------------------------------------------------- 135 (368)
T 1fch_A 113 QELLAISALRRCLELKPDNQTAL--------------------------------------------------------- 135 (368)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHH---------------------------------------------------------
T ss_pred CHHHHHHHHHHHHhcCCCCHHHH---------------------------------------------------------
Confidence 99999999999999998876543
Q ss_pred HhhhcCCCchhhhhchHHHHHHHHHHHhhhcCCCCCCCccccccccCCCCCCCccccccCCCCCCCCCCccccHHHHHHH
Q 009278 165 KDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKEAK 244 (538)
Q Consensus 165 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (538)
T Consensus 136 -------------------------------------------------------------------------------- 135 (368)
T 1fch_A 136 -------------------------------------------------------------------------------- 135 (368)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHH----------------HHHHHHHHhCCHHHHHHHHH
Q 009278 245 ERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLT----------------NRAAVYLEMGKYEECIKDCD 308 (538)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~----------------~la~~~~~~~~~~~A~~~~~ 308 (538)
..+|.++...|++++|+..|++++..+|.+...+. .++.++ ..|++++|+..++
T Consensus 136 ---------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~ 205 (368)
T 1fch_A 136 ---------MALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFL 205 (368)
T ss_dssp ---------HHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-HHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHH
Confidence 44567788889999999999999999998876664 466666 9999999999999
Q ss_pred HHHHccccchhhHHHHHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCc
Q 009278 309 KAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKI 388 (538)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 388 (538)
+++...|+... +.++..+|.++...++ +++|+..|++++. .+|.+
T Consensus 206 ~a~~~~p~~~~-----~~~~~~l~~~~~~~g~----~~~A~~~~~~al~--------------------------~~~~~ 250 (368)
T 1fch_A 206 AAVRLDPTSID-----PDVQCGLGVLFNLSGE----YDKAVDCFTAALS--------------------------VRPND 250 (368)
T ss_dssp HHHHHSTTSCC-----HHHHHHHHHHHHHTTC----HHHHHHHHHHHHH--------------------------HCTTC
T ss_pred HHHHhCcCccc-----HHHHHHHHHHHHHcCC----HHHHHHHHHHHHH--------------------------hCcCC
Confidence 99999998321 5677888888888888 9999999999998 78899
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCc-----------h
Q 009278 389 ADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTF-----------S 457 (538)
Q Consensus 389 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-----------~ 457 (538)
+.++..+|.++...|++++|+..|+++++..|.++.++..+|.++...|++++|+.+|++++.+.|++ +
T Consensus 251 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 330 (368)
T 1fch_A 251 YLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSE 330 (368)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999888 8
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHhcc
Q 009278 458 KGYTRKGAIQFFLKEYDKALETYQEGLKH 486 (538)
Q Consensus 458 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 486 (538)
.+|..+|.++..+|++++|..+++++++.
T Consensus 331 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 359 (368)
T 1fch_A 331 NIWSTLRLALSMLGQSDAYGAADARDLST 359 (368)
T ss_dssp HHHHHHHHHHHHHTCGGGHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhCChHhHHHhHHHHHHH
Confidence 99999999999999999999999877754
No 18
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.6e-31 Score=260.89 Aligned_cols=373 Identities=14% Similarity=0.068 Sum_probs=270.8
Q ss_pred CCHHHHHHHHHHHh----ccCC--cchHHHHHHHHHHHhcCCHHHHHHHHHHHhcc---------CCCchHHHHHHHHHH
Q 009278 16 GDYEAAVRHFTEAI----SLSP--DNHVLYSNRSAAHASLHNYADALADAKKTVEL---------KPDWSKGYSRLGAAH 80 (538)
Q Consensus 16 g~~~~A~~~~~~al----~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---------~p~~~~~~~~la~~~ 80 (538)
++++.++..+++.+ +..+ ..+.++..+|.++..+|++++|++.|++++++ +|....+|..+|.+|
T Consensus 25 ~~~~~~l~~~e~~~~~~~~~~~~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y 104 (472)
T 4g1t_A 25 MEGENSLDDFEDKVFYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVY 104 (472)
T ss_dssp TTTCCCHHHHHHHHHHHTTSCC---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHH
Confidence 34444555554443 3333 23567888999999999999999999999876 566778899999999
Q ss_pred hhccCHHHHHHHHHhhhhcCCCcHHHHhhHHHHHHHHhhcccCCCCCCCCcccccccCCchhhcccCCCCCCCcccHHHH
Q 009278 81 LGLQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDF 160 (538)
Q Consensus 81 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (538)
..+|++++|+.+|++++++.|......
T Consensus 105 ~~~g~~~~A~~~~~ka~~i~~~~~~~~----------------------------------------------------- 131 (472)
T 4g1t_A 105 YHMGRLSDVQIYVDKVKHVCEKFSSPY----------------------------------------------------- 131 (472)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHSCCSS-----------------------------------------------------
T ss_pred HHcCChHHHHHHHHHHHHHhHhccccc-----------------------------------------------------
Confidence 999999999999999987643211000
Q ss_pred HHHHHhhhcCCCchhhhhchHHHHHHHHHHHhhhcCCCCCCCccccccccCCCCCCCccccccCCCCCCCCCCccccHHH
Q 009278 161 RNMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEE 240 (538)
Q Consensus 161 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (538)
.
T Consensus 132 ---------~---------------------------------------------------------------------- 132 (472)
T 4g1t_A 132 ---------R---------------------------------------------------------------------- 132 (472)
T ss_dssp ---------C----------------------------------------------------------------------
T ss_pred ---------c----------------------------------------------------------------------
Confidence 0
Q ss_pred HHHHHhHHHHHHHHHHHHHHH--hcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH---hCCHHHHHHHHHHHHHccc
Q 009278 241 KEAKERKEKALKEKEAGNAAY--KKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLE---MGKYEECIKDCDKAVERGR 315 (538)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~---~~~~~~A~~~~~~~~~~~~ 315 (538)
+..+.++..+|..+. ..++|++|+.+|+++++++|+++.++..++.++.. .++.++|+..++++++++|
T Consensus 133 ------~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p 206 (472)
T 4g1t_A 133 ------IESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNP 206 (472)
T ss_dssp ------CCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCS
T ss_pred ------hhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCC
Confidence 011223444454443 45689999999999999999999999999888654 4677889999999999999
Q ss_pred cchhhHHHHHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCCh--------hHHHhhhhHHHHHHHHHHHHHcCCC
Q 009278 316 ELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNP--------DTLKKLNEAEKAKKELEQQEIFDPK 387 (538)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~~~ 387 (538)
++. .++..+|..+...+...+++++|+..+++++...|.. .++...|++++|+..+.++++.+|+
T Consensus 207 ~~~-------~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 279 (472)
T 4g1t_A 207 DNQ-------YLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN 279 (472)
T ss_dssp SCH-------HHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred cch-------HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC
Confidence 884 4445555555444444444899999999999988763 3567789999999999999999999
Q ss_pred chHHHHHHHHHHHhc-------------------CChHHHHHHHHHHHhcCCCCchhHhHHHHHHHHhCCchhHHHHHHH
Q 009278 388 IADEEREKGNEFFKQ-------------------QKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADK 448 (538)
Q Consensus 388 ~~~~~~~la~~~~~~-------------------~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 448 (538)
++.++..+|.+|... +.+++|+..|+++++.+|.++.++..+|.++...|++++|+.+|++
T Consensus 280 ~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~k 359 (472)
T 4g1t_A 280 NAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQK 359 (472)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHH
Confidence 999999999988643 3478899999999999999999999999999999999999999999
Q ss_pred HHhcCCCchH---HHHHHHHH-HHHccCHHHHHHHHHHHhccCCCCHHHHHHHH-----------------HHHHHhhhh
Q 009278 449 CIELDPTFSK---GYTRKGAI-QFFLKEYDKALETYQEGLKHDPQNQELLDGVR-----------------RCVQQINKA 507 (538)
Q Consensus 449 al~~~p~~~~---~~~~l~~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~-----------------~~~~~~~~~ 507 (538)
+++.+|++.. .+..+|.+ +...|++++|+.+|++++++.|++......+. .++..+|..
T Consensus 360 aL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~ 439 (472)
T 4g1t_A 360 EFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFL 439 (472)
T ss_dssp HHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHH
T ss_pred HHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 9999887654 45667765 45789999999999999999999876544332 234445554
Q ss_pred ccCCCChHHHHHHHHhccC-Cchhhhh
Q 009278 508 GRGELSPEELKERQAKGMQ-DPKFRTY 533 (538)
Q Consensus 508 ~~a~~~~~~~~~~~~~~~~-~p~~~~~ 533 (538)
-.....++++.+.+++++. +|.+...
T Consensus 440 ~~~~g~~~~A~~~y~kALe~~~~~p~a 466 (472)
T 4g1t_A 440 QELNEKMQQADEDSERGLESGSLIPSA 466 (472)
T ss_dssp HHHHHHCC-------------------
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCCCcH
Confidence 4444555677777888776 6665544
No 19
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=100.00 E-value=6.3e-33 Score=261.16 Aligned_cols=229 Identities=15% Similarity=0.186 Sum_probs=198.2
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHH---HHHHH
Q 009278 253 EKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMI---ARALT 329 (538)
Q Consensus 253 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~---~~~~~ 329 (538)
+..+|.++...|++++|+.+|+++++.+|+++.++..+|.++...|++++|+..++++++..|++...+..+ +..+.
T Consensus 102 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 181 (365)
T 4eqf_A 102 WQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTR 181 (365)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC------------
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHH
Confidence 344577788889999999999999999999999999999999999999999999999999999876655433 44556
Q ss_pred HhHHHHHHhhhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCC--chHHHHHHHHHHHhcCChHH
Q 009278 330 RKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPK--IADEEREKGNEFFKQQKYPE 407 (538)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~la~~~~~~~~~~~ 407 (538)
.+|.++...++ +++|+..|++++. .+|. ++.++..+|.++...|++++
T Consensus 182 ~l~~~~~~~g~----~~~A~~~~~~al~--------------------------~~p~~~~~~~~~~l~~~~~~~g~~~~ 231 (365)
T 4eqf_A 182 RMSKSPVDSSV----LEGVKELYLEAAH--------------------------QNGDMIDPDLQTGLGVLFHLSGEFNR 231 (365)
T ss_dssp -------CCHH----HHHHHHHHHHHHH--------------------------HSCSSCCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHhhhhh----HHHHHHHHHHHHH--------------------------hCcCccCHHHHHHHHHHHHHCCCHHH
Confidence 66778888888 8899888888888 7788 88999999999999999999
Q ss_pred HHHHHHHHHhcCCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCchHHHHHHHHHHHHccCHHHHHHHHHHHhccC
Q 009278 408 AIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHD 487 (538)
Q Consensus 408 A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 487 (538)
|+..|+++++..|.++.+|..+|.++...|++++|+.+|+++++.+|+++.++..+|.++...|++++|+.+|++++++.
T Consensus 232 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 311 (365)
T 4eqf_A 232 AIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQ 311 (365)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CC------------CHHHHHHHHHHHHHhhhhccCC
Q 009278 488 PQ------------NQELLDGVRRCVQQINKAGRGE 511 (538)
Q Consensus 488 p~------------~~~~~~~l~~~~~~~~~~~~a~ 511 (538)
|+ +..++..++.++..+|+.+.+.
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 347 (365)
T 4eqf_A 312 RKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQ 347 (365)
T ss_dssp HCC------------CHHHHHHHHHHHHHTCHHHHH
T ss_pred cccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHH
Confidence 87 4678999999999999887655
No 20
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=100.00 E-value=7.6e-32 Score=253.75 Aligned_cols=283 Identities=13% Similarity=0.114 Sum_probs=241.9
Q ss_pred HHHHHHhccCCcch----HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHHHHHhhccCHHHHHHHHHhhhh
Q 009278 23 RHFTEAISLSPDNH----VLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLD 98 (538)
Q Consensus 23 ~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 98 (538)
..+.+++...|.++ ..++.+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|+++++
T Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 127 (365)
T 4eqf_A 48 SASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLE 127 (365)
T ss_dssp -----CCCCCSSCTTTTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhhcccCCcccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 55556666555554 45999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcHHHHhhHHHHHHHHhhcccCCCCCCCCcccccccCCchhhcccCCCCCCCcccHHHHHHHHHhhhcCCCchhhhh
Q 009278 99 IDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRNMMKDIQRNPNNLNLYL 178 (538)
Q Consensus 99 ~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 178 (538)
++|++..++
T Consensus 128 ~~p~~~~~~----------------------------------------------------------------------- 136 (365)
T 4eqf_A 128 LQPNNLKAL----------------------------------------------------------------------- 136 (365)
T ss_dssp HCTTCHHHH-----------------------------------------------------------------------
T ss_pred cCCCCHHHH-----------------------------------------------------------------------
Confidence 998875543
Q ss_pred chHHHHHHHHHHHhhhcCCCCCCCccccccccCCCCCCCccccccCCCCCCCCCCccccHHHHHHHHhHHHHHHHHHHHH
Q 009278 179 KDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKEAKERKEKALKEKEAGN 258 (538)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (538)
..+|.
T Consensus 137 ---------------------------------------------------------------------------~~l~~ 141 (365)
T 4eqf_A 137 ---------------------------------------------------------------------------MALAV 141 (365)
T ss_dssp ---------------------------------------------------------------------------HHHHH
T ss_pred ---------------------------------------------------------------------------HHHHH
Confidence 44577
Q ss_pred HHHhcccHHHHHHHHHHHHhhCCCCHHHHHHH----------HHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHHHHH
Q 009278 259 AAYKKKEFEKAIEHYSSALELDDEDISYLTNR----------AAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARAL 328 (538)
Q Consensus 259 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l----------a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (538)
++...|++++|+.+|+++++.+|++..++..+ |.++...|++++|+.++++++...|+... +.++
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~-----~~~~ 216 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMID-----PDLQ 216 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCC-----HHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccC-----HHHH
Confidence 78888999999999999999999876666554 99999999999999999999999998211 5677
Q ss_pred HHhHHHHHHhhhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcCChHHH
Q 009278 329 TRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEA 408 (538)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 408 (538)
..+|.++...++ +++|+..|++++. ..|.++.++..+|.++...|++++|
T Consensus 217 ~~l~~~~~~~g~----~~~A~~~~~~al~--------------------------~~p~~~~~~~~l~~~~~~~g~~~~A 266 (365)
T 4eqf_A 217 TGLGVLFHLSGE----FNRAIDAFNAALT--------------------------VRPEDYSLWNRLGATLANGDRSEEA 266 (365)
T ss_dssp HHHHHHHHHHTC----HHHHHHHHHHHHH--------------------------HCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHCCC----HHHHHHHHHHHHH--------------------------hCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 788888888888 9999999999998 7899999999999999999999999
Q ss_pred HHHHHHHHhcCCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCC------------chHHHHHHHHHHHHccCHHHH
Q 009278 409 IQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPT------------FSKGYTRKGAIQFFLKEYDKA 476 (538)
Q Consensus 409 ~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~------------~~~~~~~l~~~~~~~g~~~~A 476 (538)
+..|+++++.+|+++.++..+|.++..+|++++|+.+|++++++.|+ +..+|..++.++..+|+.+.|
T Consensus 267 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 346 (365)
T 4eqf_A 267 VEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELF 346 (365)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHH
Confidence 99999999999999999999999999999999999999999999877 467899999999999999999
Q ss_pred HHHHHHHhcc
Q 009278 477 LETYQEGLKH 486 (538)
Q Consensus 477 ~~~~~~al~~ 486 (538)
....++.+..
T Consensus 347 ~~~~~~~l~~ 356 (365)
T 4eqf_A 347 QAANLGDLDV 356 (365)
T ss_dssp HHHHTTCCGG
T ss_pred HHHHHhhHHH
Confidence 8887775543
No 21
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.98 E-value=1.1e-30 Score=242.85 Aligned_cols=212 Identities=10% Similarity=0.031 Sum_probs=182.4
Q ss_pred HHHHHHHhccc-HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHHHHHHHhHH
Q 009278 255 EAGNAAYKKKE-FEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGT 333 (538)
Q Consensus 255 ~~~~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (538)
.+|.++...|+ +++|+.+|++++.++|++..+|+.+|.++..+|++++|+..|++++.++|++ ..+|..+|.
T Consensus 136 ~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~-------~~a~~~lg~ 208 (382)
T 2h6f_A 136 FRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKN-------YHAWQHRQW 208 (382)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC-------HHHHHHHHH
T ss_pred HHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccC-------HHHHHHHHH
Confidence 34555666675 8888888888888888888888888888888888888888888888888888 667777777
Q ss_pred HHHHhhhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHh-cCChHHH----
Q 009278 334 ALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFK-QQKYPEA---- 408 (538)
Q Consensus 334 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~~~A---- 408 (538)
++..+++ +++|+.+|++++. .+|++..+|+.+|.++.. .|.+++|
T Consensus 209 ~~~~~g~----~~eAl~~~~~al~--------------------------l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~ 258 (382)
T 2h6f_A 209 VIQEFKL----WDNELQYVDQLLK--------------------------EDVRNNSVWNQRYFVISNTTGYNDRAVLER 258 (382)
T ss_dssp HHHHHTC----CTTHHHHHHHHHH--------------------------HCTTCHHHHHHHHHHHHHTTCSCSHHHHHH
T ss_pred HHHHcCC----hHHHHHHHHHHHH--------------------------hCCCCHHHHHHHHHHHHHhcCcchHHHHHH
Confidence 7777777 8888888888888 788889999999999998 5555787
Q ss_pred -HHHHHHHHhcCCCCchhHhHHHHHHHHhC--CchhHHHHHHHHHhcCCCchHHHHHHHHHHHHcc--------C-HHHH
Q 009278 409 -IQHYTESLRRNPKDPRTYSNRAACYTKLG--AMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLK--------E-YDKA 476 (538)
Q Consensus 409 -~~~~~~al~~~~~~~~~~~~la~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g--------~-~~~A 476 (538)
+.+|++++.++|++..+|+++|.++...| ++++|+..+.++ +.+|+++.++..+|.+|..+| + +++|
T Consensus 259 el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A 337 (382)
T 2h6f_A 259 EVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKA 337 (382)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHH
Confidence 58899999999999999999999999888 699999999888 889999999999999999875 3 5899
Q ss_pred HHHHHHH-hccCCCCHHHHHHHHHHHHHh
Q 009278 477 LETYQEG-LKHDPQNQELLDGVRRCVQQI 504 (538)
Q Consensus 477 ~~~~~~a-l~~~p~~~~~~~~l~~~~~~~ 504 (538)
+.+|+++ ++++|.....|..++.++...
T Consensus 338 ~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 338 LELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 9999999 999999999999999888765
No 22
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.98 E-value=7.6e-31 Score=243.83 Aligned_cols=260 Identities=12% Similarity=0.069 Sum_probs=233.3
Q ss_pred HhccCCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHHHHHhhccC-HHHHHHHHHhhhhcCCCcHHH
Q 009278 28 AISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQD-YIEAVNSYKKGLDIDPNNEAL 106 (538)
Q Consensus 28 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~-~~~A~~~~~~al~~~p~~~~~ 106 (538)
++..+|+++.++..+|.++...|++++|+..|++++.++|++..+|..+|.++..+|+ +++|+..|+++++++|++..+
T Consensus 89 ai~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a 168 (382)
T 2h6f_A 89 QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQV 168 (382)
T ss_dssp EECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH
T ss_pred hhhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHH
Confidence 5677888999999999999999999999999999999999999999999999999997 999999999999999998776
Q ss_pred HhhHHHHHHHHhhcccCCCCCCCCcccccccCCchhhcccCCCCCCCcccHHHHHHHHHhhhcCCCchhhhhchHHHHHH
Q 009278 107 KSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRNMMKDIQRNPNNLNLYLKDQRVMQA 186 (538)
Q Consensus 107 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 186 (538)
|..+
T Consensus 169 ~~~~---------------------------------------------------------------------------- 172 (382)
T 2h6f_A 169 WHHR---------------------------------------------------------------------------- 172 (382)
T ss_dssp HHHH----------------------------------------------------------------------------
T ss_pred HHHH----------------------------------------------------------------------------
Confidence 5544
Q ss_pred HHHHHhhhcCCCCCCCccccccccCCCCCCCccccccCCCCCCCCCCccccHHHHHHHHhHHHHHHHHHHHHHHHhcccH
Q 009278 187 LGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKEAKERKEKALKEKEAGNAAYKKKEF 266 (538)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (538)
|.++...|++
T Consensus 173 ----------------------------------------------------------------------g~~~~~~g~~ 182 (382)
T 2h6f_A 173 ----------------------------------------------------------------------RVLVEWLRDP 182 (382)
T ss_dssp ----------------------------------------------------------------------HHHHHHHTCC
T ss_pred ----------------------------------------------------------------------HHHHHHccCH
Confidence 5666677899
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHHHHHHHhHHHHHHhhhcccChh
Q 009278 267 EKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYE 346 (538)
Q Consensus 267 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (538)
++|+.+|+++++++|++..+|+.+|.++..+|++++|+.+|+++++++|++ ..+|..+|.++..++. ..+
T Consensus 183 ~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~-------~~a~~~lg~~l~~l~~---~~~ 252 (382)
T 2h6f_A 183 SQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRN-------NSVWNQRYFVISNTTG---YND 252 (382)
T ss_dssp TTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTC---SCS
T ss_pred HHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHhcC---cch
Confidence 999999999999999999999999999999999999999999999999998 6677777777777333 047
Q ss_pred HH-----HHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcC--ChHHHHHHHHHHHhcC
Q 009278 347 PA-----IETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQ--KYPEAIQHYTESLRRN 419 (538)
Q Consensus 347 ~A-----~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~--~~~~A~~~~~~al~~~ 419 (538)
+| +.+|++++. ++|++..+|+.+|.++...| ++++|+..+.++ +.+
T Consensus 253 eA~~~~el~~~~~Al~--------------------------l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~ 305 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIK--------------------------LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS 305 (382)
T ss_dssp HHHHHHHHHHHHHHHH--------------------------HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT
T ss_pred HHHHHHHHHHHHHHHH--------------------------HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC
Confidence 77 466666666 89999999999999999988 699999999998 999
Q ss_pred CCCchhHhHHHHHHHHhC--------C-chhHHHHHHHH-HhcCCCchHHHHHHHHHHHHc
Q 009278 420 PKDPRTYSNRAACYTKLG--------A-MPEGLKDADKC-IELDPTFSKGYTRKGAIQFFL 470 (538)
Q Consensus 420 ~~~~~~~~~la~~~~~~~--------~-~~~A~~~~~~a-l~~~p~~~~~~~~l~~~~~~~ 470 (538)
|+++.++..+|.+|..+| + +++|+.+|+++ ++++|.....|..++..+..+
T Consensus 306 p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 306 HSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 999999999999999985 2 58999999999 999999999999999888754
No 23
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.5e-29 Score=225.67 Aligned_cols=250 Identities=43% Similarity=0.698 Sum_probs=239.3
Q ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHHH
Q 009278 247 KEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIAR 326 (538)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 326 (538)
+..+..+..+|.++...|++++|+.+|+++++.+ .++.++..+|.++...|++++|+..+++++...|+..+.....+.
T Consensus 2 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 80 (258)
T 3uq3_A 2 GSMADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISK 80 (258)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHH
Confidence 4578899999999999999999999999999999 999999999999999999999999999999999987666666678
Q ss_pred HHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcCChH
Q 009278 327 ALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYP 406 (538)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 406 (538)
++..+|.++...++ +++|+..|++++...+.+..+...+++++|+..+++++..+|..+.++..+|.++...|+++
T Consensus 81 ~~~~l~~~~~~~~~----~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (258)
T 3uq3_A 81 SFARIGNAYHKLGD----LKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWP 156 (258)
T ss_dssp HHHHHHHHHHHTTC----HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHccc----HHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHH
Confidence 99999999999999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCchHHHHHHHHHHHHccCHHHHHHHHHHHhcc
Q 009278 407 EAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKH 486 (538)
Q Consensus 407 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 486 (538)
+|+..|+++++..|.++.++..+|.++...|++++|+.+++++++.+|+++.++..+|.++...|++++|+.+|++++++
T Consensus 157 ~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 157 NAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C------CCCHHHHHHHHHHH
Q 009278 487 D------PQNQELLDGVRRCV 501 (538)
Q Consensus 487 ~------p~~~~~~~~l~~~~ 501 (538)
+ |++..++..+..++
T Consensus 237 ~~~~~~~p~~~~~~~~l~~~~ 257 (258)
T 3uq3_A 237 DAEVNNGSSAREIDQLYYKAS 257 (258)
T ss_dssp HHHHHTTTTHHHHHHHHHHTT
T ss_pred ChhhcCCCchHHHHHHHHHhh
Confidence 9 99999988887653
No 24
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.97 E-value=1.7e-30 Score=240.71 Aligned_cols=282 Identities=16% Similarity=0.152 Sum_probs=204.8
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHHHhccCCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHHHHHhh
Q 009278 3 DEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLG 82 (538)
Q Consensus 3 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 82 (538)
+.++.+|..++..|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++..+|+++.++..+|.++..
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~ 101 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 101 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHHHHhhhhcCCCcHHHHhhHHHHHHHHhhcccCCCCCCCCcccccccCCchhhcccCCCCCCCcccHHHHHH
Q 009278 83 LQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRN 162 (538)
Q Consensus 83 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (538)
.|++++|+..|++++...|.+...+..+.....
T Consensus 102 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------------- 134 (327)
T 3cv0_A 102 EHNANAALASLRAWLLSQPQYEQLGSVNLQADV----------------------------------------------- 134 (327)
T ss_dssp TTCHHHHHHHHHHHHHTSTTTTTC--------------------------------------------------------
T ss_pred cCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHH-----------------------------------------------
Confidence 999999999999999999987655433311100
Q ss_pred HHHhhhcCCCchhhhhchHHHHHHHHHHHhhhcCCCCCCCccccccccCCCCCCCccccccCCCCCCCCCCccccHHHHH
Q 009278 163 MMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKE 242 (538)
Q Consensus 163 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (538)
T Consensus 135 -------------------------------------------------------------------------------- 134 (327)
T 3cv0_A 135 -------------------------------------------------------------------------------- 134 (327)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhHHHHHHHHHH-HH-HHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhh
Q 009278 243 AKERKEKALKEKEA-GN-AAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSD 320 (538)
Q Consensus 243 ~~~~~~~~~~~~~~-~~-~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 320 (538)
.......+ +. ++...|++++|+.+++++++.+|.++.++..+|.++...|++++|+..+++++...|++
T Consensus 135 ------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~--- 205 (327)
T 3cv0_A 135 ------DIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDD--- 205 (327)
T ss_dssp -----------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---
T ss_pred ------HHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc---
Confidence 00001122 22 36677889999999999999999888888888888888888888888888887766655
Q ss_pred HHHHHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHH
Q 009278 321 FKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFF 400 (538)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~ 400 (538)
..++ ..+|.++.
T Consensus 206 ----~~~~----------------------------------------------------------------~~l~~~~~ 217 (327)
T 3cv0_A 206 ----AQLW----------------------------------------------------------------NKLGATLA 217 (327)
T ss_dssp ----HHHH----------------------------------------------------------------HHHHHHHH
T ss_pred ----HHHH----------------------------------------------------------------HHHHHHHH
Confidence 2333 34444455
Q ss_pred hcCChHHHHHHHHHHHhcCCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCC------------chHHHHHHHHHHH
Q 009278 401 KQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPT------------FSKGYTRKGAIQF 468 (538)
Q Consensus 401 ~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~------------~~~~~~~l~~~~~ 468 (538)
..|++++|+..|+++++..|.++.++..+|.++...|++++|+.++++++...|+ ++.++..+|.++.
T Consensus 218 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 297 (327)
T 3cv0_A 218 NGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLN 297 (327)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHH
Confidence 5555555555555555555555555555555555555555555555555555555 4555666666666
Q ss_pred HccCHHHHHHHHHHHhccCC
Q 009278 469 FLKEYDKALETYQEGLKHDP 488 (538)
Q Consensus 469 ~~g~~~~A~~~~~~al~~~p 488 (538)
..|++++|...++++++..|
T Consensus 298 ~~g~~~~A~~~~~~~l~~~~ 317 (327)
T 3cv0_A 298 VMNRPDLVELTYAQNVEPFA 317 (327)
T ss_dssp HTTCHHHHHHHTTCCSHHHH
T ss_pred hcCCHHHHHHHHHHHHHhcc
Confidence 66666666666655555433
No 25
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.97 E-value=3.1e-30 Score=238.89 Aligned_cols=288 Identities=14% Similarity=0.148 Sum_probs=231.9
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHHHHHhhccCHHHHHHHHHhhhhcCCCcHHHHhhHHHHH
Q 009278 35 NHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNEALKSGLADAK 114 (538)
Q Consensus 35 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 114 (538)
+...++.+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|+++++.+|++..++
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~------- 92 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVH------- 92 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH-------
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHH-------
Confidence 3466778888888888888888888888888888888888888888888888888888888887777654432
Q ss_pred HHHhhcccCCCCCCCCcccccccCCchhhcccCCCCCCCcccHHHHHHHHHhhhcCCCchhhhhchHHHHHHHHHHHhhh
Q 009278 115 AAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRNMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVK 194 (538)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (538)
T Consensus 93 -------------------------------------------------------------------------------- 92 (327)
T 3cv0_A 93 -------------------------------------------------------------------------------- 92 (327)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCCccccccccCCCCCCCccccccCCCCCCCCCCccccHHHHHHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHH
Q 009278 195 FKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKEAKERKEKALKEKEAGNAAYKKKEFEKAIEHYS 274 (538)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 274 (538)
..+|.++...|++++|+..++
T Consensus 93 -----------------------------------------------------------~~la~~~~~~~~~~~A~~~~~ 113 (327)
T 3cv0_A 93 -----------------------------------------------------------AALAVSHTNEHNANAALASLR 113 (327)
T ss_dssp -----------------------------------------------------------HHHHHHHHHTTCHHHHHHHHH
T ss_pred -----------------------------------------------------------HHHHHHHHHcCCHHHHHHHHH
Confidence 334556666777788888888
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHHHHHHHh-HH-HHHHhhhcccChhHHHHHH
Q 009278 275 SALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRK-GT-ALVKMAKCSKDYEPAIETF 352 (538)
Q Consensus 275 ~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~A~~~~ 352 (538)
+++..+|.+...+..+.... |. ......+ +. ++...++ +++|+..+
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~--------------------~~--------~~~~~~~~~~~~~~~~~~----~~~A~~~~ 161 (327)
T 3cv0_A 114 AWLLSQPQYEQLGSVNLQAD--------------------VD--------IDDLNVQSEDFFFAAPNE----YRECRTLL 161 (327)
T ss_dssp HHHHTSTTTTTC------------------------------------------------CCTTSHHH----HHHHHHHH
T ss_pred HHHHhCCccHHHHHHHhHHH--------------------HH--------HHHHHHHHHhHHHHHccc----HHHHHHHH
Confidence 88877777665544442111 11 1111123 22 3556666 99999999
Q ss_pred HHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHhHHHHH
Q 009278 353 QKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAAC 432 (538)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~ 432 (538)
++++. ..|.++.++..+|.++...|++++|+..+++++...|.++.++..+|.+
T Consensus 162 ~~~~~--------------------------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 215 (327)
T 3cv0_A 162 HAALE--------------------------MNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGAT 215 (327)
T ss_dssp HHHHH--------------------------HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHh--------------------------hCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 99998 7888999999999999999999999999999999999999999999999
Q ss_pred HHHhCCchhHHHHHHHHHhcCCCchHHHHHHHHHHHHccCHHHHHHHHHHHhccCCC------------CHHHHHHHHHH
Q 009278 433 YTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQ------------NQELLDGVRRC 500 (538)
Q Consensus 433 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~------------~~~~~~~l~~~ 500 (538)
+...|++++|+..++++++..|+++.++..+|.++...|++++|+.+|++++...|+ +..++..++.+
T Consensus 216 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 295 (327)
T 3cv0_A 216 LANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRML 295 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999 79999999999
Q ss_pred HHHhhhhccCCCChHHHHHHHHhccC
Q 009278 501 VQQINKAGRGELSPEELKERQAKGMQ 526 (538)
Q Consensus 501 ~~~~~~~~~a~~~~~~~~~~~~~~~~ 526 (538)
+..+|+.++|...++++.+.+.....
T Consensus 296 ~~~~g~~~~A~~~~~~~l~~~~~~~~ 321 (327)
T 3cv0_A 296 LNVMNRPDLVELTYAQNVEPFAKEFG 321 (327)
T ss_dssp HHHTTCHHHHHHHTTCCSHHHHHHTT
T ss_pred HHhcCCHHHHHHHHHHHHHhcchhhh
Confidence 99999999998877777676665543
No 26
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.97 E-value=9.6e-28 Score=234.50 Aligned_cols=369 Identities=14% Similarity=0.097 Sum_probs=299.0
Q ss_pred hhHHHHHHHHHhh----cCCHHHHHHHHHHHhccCCcchHHHHHHHHHHHh----cCCHHHHHHHHHHHhccCCCchHHH
Q 009278 2 ADEAKAKGNAAFS----SGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHAS----LHNYADALADAKKTVELKPDWSKGY 73 (538)
Q Consensus 2 a~~~~~~g~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~ 73 (538)
+++++.+|..++. .+++++|+.+|+++++. .++.+++.+|.+|.. .+++++|+.+|+++... .++.++
T Consensus 39 ~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~ 114 (490)
T 2xm6_A 39 AKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--GLPQAQ 114 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHH
T ss_pred HHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHH
Confidence 4678899999999 99999999999999986 578999999999999 99999999999999875 578999
Q ss_pred HHHHHHHhh----ccCHHHHHHHHHhhhhcCCCcHHHHhhHHHHHHHHhhcccCCCCCCCCcccccccCCchhhcccCCC
Q 009278 74 SRLGAAHLG----LQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADP 149 (538)
Q Consensus 74 ~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (538)
+.+|.+|.. .+++++|+.+|+++.+. +++.++..++.++..-....
T Consensus 115 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~---------------------------- 164 (490)
T 2xm6_A 115 QNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVT---------------------------- 164 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSC----------------------------
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCC----------------------------
Confidence 999999998 89999999999999875 67888888988876521000
Q ss_pred CCCCcccHHHHHHHHHhhhcCCCchhhhhchHHHHHHHHHHHhhhcCCCCCCCccccccccCCCCCCCccccccCCCCCC
Q 009278 150 TTRSYLDQDDFRNMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEP 229 (538)
Q Consensus 150 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (538)
.....++..+.+.+..
T Consensus 165 ----~d~~~A~~~~~~a~~~------------------------------------------------------------ 180 (490)
T 2xm6_A 165 ----RDYVMAREWYSKAAEQ------------------------------------------------------------ 180 (490)
T ss_dssp ----CCHHHHHHHHHHHHHT------------------------------------------------------------
T ss_pred ----CCHHHHHHHHHHHHHC------------------------------------------------------------
Confidence 0001122222222111
Q ss_pred CCCCccccHHHHHHHHhHHHHHHHHHHHHHHHh----cccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----hCCHH
Q 009278 230 EPEPMELTEEEKEAKERKEKALKEKEAGNAAYK----KKEFEKAIEHYSSALELDDEDISYLTNRAAVYLE----MGKYE 301 (538)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~ 301 (538)
..+.++..+|.+|.. .+++++|+.+|+++.+. .++.+++.+|.+|.. .++++
T Consensus 181 ------------------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g~~~~~~ 240 (490)
T 2xm6_A 181 ------------------GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS--GDELGQLHLADMYYFGIGVTQDYT 240 (490)
T ss_dssp ------------------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHH
T ss_pred ------------------CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHH
Confidence 245677888999988 89999999999999875 467889999999987 88999
Q ss_pred HHHHHHHHHHHccccchhhHHHHHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCCh------hHHHhh-----hh
Q 009278 302 ECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNP------DTLKKL-----NE 370 (538)
Q Consensus 302 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~-----~~ 370 (538)
+|+.+|+++++..+ ..+++.+|.++..-....+++++|+.+|+++.+..... .++... ++
T Consensus 241 ~A~~~~~~a~~~~~---------~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~ 311 (490)
T 2xm6_A 241 QSRVLFSQSAEQGN---------SIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKN 311 (490)
T ss_dssp HHHHHHHHHHTTTC---------HHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCC
T ss_pred HHHHHHHHHHHCCC---------HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCC
Confidence 99999999987533 45677778777761111233999999999998764321 123333 68
Q ss_pred HHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcC---ChHHHHHHHHHHHhcCCCCchhHhHHHHHHHH----hCCchhHH
Q 009278 371 AEKAKKELEQQEIFDPKIADEEREKGNEFFKQQ---KYPEAIQHYTESLRRNPKDPRTYSNRAACYTK----LGAMPEGL 443 (538)
Q Consensus 371 ~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~---~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~~~~~~A~ 443 (538)
+++|+..|+++.+. .++.+++.+|.++...| ++++|+.+|+++++. .++.+++.+|.+|.. .+++++|+
T Consensus 312 ~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~ 387 (490)
T 2xm6_A 312 REQAISWYTKSAEQ--GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAA 387 (490)
T ss_dssp HHHHHHHHHHHHHT--TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 89999999998876 56789999999999877 899999999999987 578999999999999 89999999
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHHHH----ccCHHHHHHHHHHHhccCCC---CHHHHHHHHHHHHH
Q 009278 444 KDADKCIELDPTFSKGYTRKGAIQFF----LKEYDKALETYQEGLKHDPQ---NQELLDGVRRCVQQ 503 (538)
Q Consensus 444 ~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~ 503 (538)
.+|+++++. .++.+++.+|.+|.. .+++++|..+|+++++..|+ ++.+...++.++..
T Consensus 388 ~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 388 IWMRKAAEQ--GLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp HHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred HHHHHHHhC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 999999986 468999999999999 89999999999999999954 88888888877654
No 27
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.97 E-value=1.6e-27 Score=235.27 Aligned_cols=425 Identities=10% Similarity=-0.005 Sum_probs=293.7
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHHHhccCCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHHH-HHh
Q 009278 3 DEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGA-AHL 81 (538)
Q Consensus 3 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~-~~~ 81 (538)
+.|...+. +.+.|++++|...|++++...|.++.+|..++..+...|++++|...|++++...| +...|..++. +..
T Consensus 14 ~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p-~~~lw~~~~~~~~~ 91 (530)
T 2ooe_A 14 DAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL-HIDLWKCYLSYVRE 91 (530)
T ss_dssp HHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHH
Confidence 56777787 47889999999999999999999999999999999999999999999999999999 5778888885 444
Q ss_pred hccCHHHHHH----HHHhhhhc---CCCcHHHHhhHHHHHHHHhhcccCCCCCCCCcccccccCCchhhcccCCCCCCCc
Q 009278 82 GLQDYIEAVN----SYKKGLDI---DPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSY 154 (538)
Q Consensus 82 ~~~~~~~A~~----~~~~al~~---~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (538)
..|++++|.+ .|++++.. +|.+..+|..++.+....... . ......
T Consensus 92 ~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~------------~---------------~~~~~~ 144 (530)
T 2ooe_A 92 TKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAV------------G---------------SYAENQ 144 (530)
T ss_dssp HTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCC------------S---------------STTHHH
T ss_pred HccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCc------------c---------------cHHHHh
Confidence 5677777665 77777653 567777887777665431000 0 000000
Q ss_pred ccHHHHHHHHHhhhcCCCch--hhhhchHHHHH--------------------HHHHHHh---hhcCCCCCCCccccccc
Q 009278 155 LDQDDFRNMMKDIQRNPNNL--NLYLKDQRVMQ--------------------ALGVLLN---VKFKGPTGGDDVEMQDE 209 (538)
Q Consensus 155 ~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~--------------------~~~~~~~---~~~~~~~~~~~~~~~~~ 209 (538)
..+.+...+.+.+. .|... ..+........ +...+.. .... ++.++.
T Consensus 145 ~~~~a~~~y~~al~-~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~-------l~~~~~ 216 (530)
T 2ooe_A 145 RITAVRRVYQRGCV-NPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKG-------LDRNAP 216 (530)
T ss_dssp HHHHHHHHHHHHTT-SCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-------CCSSSC
T ss_pred HHHHHHHHHHHHHh-chhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-------hccccc
Confidence 00223334444444 34332 11111111110 0000000 0000 000000
Q ss_pred cCCCCCCCccccccCCCCCCCCCCccccHHHHHHHHhHHHHHHHHHHHHHHHhc----cc----HHHHHHHHHHHHhhCC
Q 009278 210 DAPKGPETSKEETRKPESEPEPEPMELTEEEKEAKERKEKALKEKEAGNAAYKK----KE----FEKAIEHYSSALELDD 281 (538)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~----~~~A~~~~~~al~~~p 281 (538)
..+ |.. .. ........|.......... ++ ..+++..|++++..+|
T Consensus 217 ~~~--p~~--------------~~-----------~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p 269 (530)
T 2ooe_A 217 SVP--PQN--------------TP-----------QEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLG 269 (530)
T ss_dssp CCC--CC----------------C-----------CHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHT
T ss_pred cCC--CCC--------------Ch-----------hHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCC
Confidence 000 000 00 0001123333332222211 22 2588899999999999
Q ss_pred CCHHHHHHHHHHHHH-------hCCHH-------HHHHHHHHHHH-ccccchhhHHHHHHHHHHhHHHHHHhhhcccChh
Q 009278 282 EDISYLTNRAAVYLE-------MGKYE-------ECIKDCDKAVE-RGRELRSDFKMIARALTRKGTALVKMAKCSKDYE 346 (538)
Q Consensus 282 ~~~~~~~~la~~~~~-------~~~~~-------~A~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (538)
.++.+|+.+|.++.. .|+++ +|+..|+++++ ..|++ ..++...+.++...|+ ++
T Consensus 270 ~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~-------~~l~~~~~~~~~~~g~----~~ 338 (530)
T 2ooe_A 270 HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKN-------MLLYFAYADYEESRMK----YE 338 (530)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSC-------HHHHHHHHHHHHHTTC----HH
T ss_pred CCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCccc-------HHHHHHHHHHHHhcCC----HH
Confidence 999999999999987 79987 99999999997 78987 5667777777777777 99
Q ss_pred HHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCch-HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchh
Q 009278 347 PAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIA-DEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRT 425 (538)
Q Consensus 347 ~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 425 (538)
+|...|++++. ..|.++ .+|..+|.++...|++++|..+|+++++..|.+...
T Consensus 339 ~A~~~~~~al~--------------------------~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~ 392 (530)
T 2ooe_A 339 KVHSIYNRLLA--------------------------IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHV 392 (530)
T ss_dssp HHHHHHHHHHH--------------------------SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHH
T ss_pred HHHHHHHHHhC--------------------------ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHH
Confidence 99999999998 666664 588888988888899999999999999888877777
Q ss_pred HhHHHHH-HHHhCCchhHHHHHHHHHhcCCCchHHHHHHHHHHHHccCHHHHHHHHHHHhccCCCCHH----HHHHHHHH
Q 009278 426 YSNRAAC-YTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQE----LLDGVRRC 500 (538)
Q Consensus 426 ~~~la~~-~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~l~~~ 500 (538)
+...+.+ +...|++++|..+|+++++.+|+++.+|..++.++...|+.++|...|++++...|.++. +|......
T Consensus 393 ~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~ 472 (530)
T 2ooe_A 393 YVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAF 472 (530)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Confidence 7766665 446889999999999999999999999999999999999999999999999988776655 88787888
Q ss_pred HHHhhhhccCCCChHHHHHHHHhccCCc
Q 009278 501 VQQINKAGRGELSPEELKERQAKGMQDP 528 (538)
Q Consensus 501 ~~~~~~~~~a~~~~~~~~~~~~~~~~~p 528 (538)
....|+.+.+.....++.+.++....++
T Consensus 473 e~~~G~~~~~~~~~~r~~~~~p~~~~~~ 500 (530)
T 2ooe_A 473 ESNIGDLASILKVEKRRFTAFREEYEGK 500 (530)
T ss_dssp HHHSSCHHHHHHHHHHHHHHTHHHHTTC
T ss_pred HHHcCCHHHHHHHHHHHHHHCchhccCc
Confidence 8888888777766666666555444433
No 28
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.97 E-value=1.4e-28 Score=221.37 Aligned_cols=257 Identities=18% Similarity=0.160 Sum_probs=187.9
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHHHHHhhccCHHHHHHHHHhhhhcCCCcHHHHhhHHHHH
Q 009278 35 NHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNEALKSGLADAK 114 (538)
Q Consensus 35 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 114 (538)
+++.++.+|.+++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++ .|.++..
T Consensus 2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~-------- 72 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKA-------- 72 (272)
T ss_dssp ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTC--------
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhH--------
Confidence 3567788888888888888888888888888888888888888888888888888888888887 4433211
Q ss_pred HHHhhcccCCCCCCCCcccccccCCchhhcccCCCCCCCcccHHHHHHHHHhhhcCCCchhhhhchHHHHHHHHHHHhhh
Q 009278 115 AAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRNMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVK 194 (538)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (538)
T Consensus 73 -------------------------------------------------------------------------------- 72 (272)
T 3u4t_A 73 -------------------------------------------------------------------------------- 72 (272)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCCccccccccCCCCCCCccccccCCCCCCCCCCccccHHHHHHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHH
Q 009278 195 FKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKEAKERKEKALKEKEAGNAAYKKKEFEKAIEHYS 274 (538)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 274 (538)
.+.++..+|.++...|++++|+.+|+
T Consensus 73 ------------------------------------------------------~~~~~~~lg~~~~~~~~~~~A~~~~~ 98 (272)
T 3u4t_A 73 ------------------------------------------------------KSADFEYYGKILMKKGQDSLAIQQYQ 98 (272)
T ss_dssp ------------------------------------------------------CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ------------------------------------------------------HHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 12335566777777788888888888
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHHHHHHHhHHHHHHhhhcccChhHHHHHHHH
Q 009278 275 SALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQK 354 (538)
Q Consensus 275 ~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 354 (538)
++++.+|.++.++..+|.++...|++++|+..++++++..|.+
T Consensus 99 ~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~------------------------------------- 141 (272)
T 3u4t_A 99 AAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTD------------------------------------- 141 (272)
T ss_dssp HHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCC-------------------------------------
T ss_pred HHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCc-------------------------------------
Confidence 8888777777777777777777777777777777666655544
Q ss_pred HHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHhHHHHHHH
Q 009278 355 ALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYT 434 (538)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~ 434 (538)
+.++..+|...+..+++++|+..|+++++..|+++.++..+|.++.
T Consensus 142 ----------------------------------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~ 187 (272)
T 3u4t_A 142 ----------------------------------PKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANA 187 (272)
T ss_dssp ----------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred ----------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence 4444455533333447778888888888888877788888888888
Q ss_pred HhCC---chhHHHHHHHHHhcC---CC-----chHHHHHHHHHHHHccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHH
Q 009278 435 KLGA---MPEGLKDADKCIELD---PT-----FSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDGVRRCVQQ 503 (538)
Q Consensus 435 ~~~~---~~~A~~~~~~al~~~---p~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 503 (538)
.+|+ +++|+..++++++.. |+ ...++..+|.++...|++++|+.+|+++++++|+++.++..++.+...
T Consensus 188 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~ 267 (272)
T 3u4t_A 188 AQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEH 267 (272)
T ss_dssp HHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-----
T ss_pred HcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcc
Confidence 8887 777888888888775 43 235788888999889999999999999999999998888888777655
Q ss_pred hh
Q 009278 504 IN 505 (538)
Q Consensus 504 ~~ 505 (538)
.+
T Consensus 268 ~~ 269 (272)
T 3u4t_A 268 HH 269 (272)
T ss_dssp --
T ss_pred cc
Confidence 43
No 29
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.96 E-value=3.8e-27 Score=212.25 Aligned_cols=279 Identities=13% Similarity=0.110 Sum_probs=216.4
Q ss_pred HHHHhhcCCHHHHHHHHHHHhccCCcc-hHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHHHHHhhccCHH
Q 009278 9 GNAAFSSGDYEAAVRHFTEAISLSPDN-HVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYI 87 (538)
Q Consensus 9 g~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~ 87 (538)
....+..|+|.+|+..+++....+|.+ .+..+.++.+|+.+|+++.|+..++. .+|....++..++..+...|+++
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcHH
Confidence 456788999999999999988888877 46888889999999999999988866 26667788889999999999999
Q ss_pred HHHHHHHhhhhc--CCCcHHHHhhHHHHHHHHhhcccCCCCCCCCcccccccCCchhhcccCCCCCCCcccHHHHHHHHH
Q 009278 88 EAVNSYKKGLDI--DPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRNMMK 165 (538)
Q Consensus 88 ~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (538)
+|+..+++++.. +|+++.++
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~---------------------------------------------------------- 104 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFL---------------------------------------------------------- 104 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHH----------------------------------------------------------
T ss_pred HHHHHHHHHHhcccCCCCHHHH----------------------------------------------------------
Confidence 999999998865 57766543
Q ss_pred hhhcCCCchhhhhchHHHHHHHHHHHhhhcCCCCCCCccccccccCCCCCCCccccccCCCCCCCCCCccccHHHHHHHH
Q 009278 166 DIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKEAKE 245 (538)
Q Consensus 166 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (538)
T Consensus 105 -------------------------------------------------------------------------------- 104 (291)
T 3mkr_A 105 -------------------------------------------------------------------------------- 104 (291)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHH
Q 009278 246 RKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIA 325 (538)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 325 (538)
+.+|.++...|++++|+..+++ |.++.++..+|.++..+|++++|+..++++++.+|++... .++
T Consensus 105 --------~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~--~l~ 169 (291)
T 3mkr_A 105 --------LMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLT--QLA 169 (291)
T ss_dssp --------HHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH--HHH
T ss_pred --------HHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHH--HHH
Confidence 4457778888999999999988 8899999999999999999999999999999998876311 112
Q ss_pred HHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcCCh
Q 009278 326 RALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKY 405 (538)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 405 (538)
.++..+ +...++ +++|+..|++++. ..|.++.+++.+|.++...|++
T Consensus 170 ~a~~~l---~~~~~~----~~eA~~~~~~~l~--------------------------~~p~~~~~~~~la~~~~~~g~~ 216 (291)
T 3mkr_A 170 TAWVSL---AAGGEK----LQDAYYIFQEMAD--------------------------KCSPTLLLLNGQAACHMAQGRW 216 (291)
T ss_dssp HHHHHH---HHCTTH----HHHHHHHHHHHHH--------------------------HSCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHH---HhCchH----HHHHHHHHHHHHH--------------------------hCCCcHHHHHHHHHHHHHcCCH
Confidence 222222 112234 7777777777766 6777788888888888888888
Q ss_pred HHHHHHHHHHHhcCCCCchhHhHHHHHHHHhCCchh-HHHHHHHHHhcCCCchHHHHHHHHHHHHccCHHHHHHHH
Q 009278 406 PEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPE-GLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETY 480 (538)
Q Consensus 406 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~-A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 480 (538)
++|+..|++++..+|+++.++.++|.++...|++++ +..+++++++++|+++.+. .+..+.+.++++..-|
T Consensus 217 ~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~----d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 217 EAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK----EYRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH----HHHHHHHHHHHHHHHc
Confidence 888888888888888888888888888888888765 4577788888888877654 3455556666665544
No 30
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.96 E-value=4.8e-28 Score=208.78 Aligned_cols=200 Identities=17% Similarity=0.187 Sum_probs=162.5
Q ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHHH
Q 009278 247 KEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIAR 326 (538)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 326 (538)
|..+.+++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++.+|++ ..
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~-------~~ 74 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRY-------LG 74 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-------HH
Confidence 34567899999999999999999999999999999999999999999999999999999999999999998 55
Q ss_pred HHHHhHHHHHHh-----------hhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHH
Q 009278 327 ALTRKGTALVKM-----------AKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREK 395 (538)
Q Consensus 327 ~~~~~~~~~~~~-----------~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 395 (538)
++..+|.++... |+ +++|+..|++++. .+|+++.++..+
T Consensus 75 a~~~lg~~~~~~~~~~~~~~~~~g~----~~~A~~~~~~al~--------------------------~~P~~~~~~~~l 124 (217)
T 2pl2_A 75 GYMVLSEAYVALYRQAEDRERGKGY----LEQALSVLKDAER--------------------------VNPRYAPLHLQR 124 (217)
T ss_dssp HHHHHHHHHHHHHHTCSSHHHHHHH----HHHHHHHHHHHHH--------------------------HCTTCHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhhhcccccC----HHHHHHHHHHHHH--------------------------hCcccHHHHHHH
Confidence 666677766666 44 6666666655555 888889999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCchHHHHHHHHHHHHccCHHH
Q 009278 396 GNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDK 475 (538)
Q Consensus 396 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 475 (538)
|.++...|++++|+..|+++++++ +++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++
T Consensus 125 g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~ 203 (217)
T 2pl2_A 125 GLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEE 203 (217)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC------
T ss_pred HHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHH
Confidence 999999999999999999999888 8888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh
Q 009278 476 ALETYQEGL 484 (538)
Q Consensus 476 A~~~~~~al 484 (538)
|+..|+++-
T Consensus 204 A~~~~~~~~ 212 (217)
T 2pl2_A 204 AARAAALEH 212 (217)
T ss_dssp ---------
T ss_pred HHHHHHHHh
Confidence 998888764
No 31
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.96 E-value=1.3e-28 Score=235.37 Aligned_cols=308 Identities=22% Similarity=0.253 Sum_probs=239.8
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHHHhccCCcch----HHHHHHHHHHHhcCCHHHHHHHHHHHhcc------CCCchH
Q 009278 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNH----VLYSNRSAAHASLHNYADALADAKKTVEL------KPDWSK 71 (538)
Q Consensus 2 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~ 71 (538)
+..++.+|..++..|++++|+..|++++...|.++ .++..+|.++...|++++|+..+++++.+ .|....
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 88 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 88 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 46788999999999999999999999999999874 68999999999999999999999999887 455678
Q ss_pred HHHHHHHHHhhccCHHHHHHHHHhhhhcCCCcHHHHhhHHHHHHHHhhcccCCCCCCCCcccccccCCchhhcccCCCCC
Q 009278 72 GYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTT 151 (538)
Q Consensus 72 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (538)
++..+|.++...|++++|+..+++++++.|.....
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~--------------------------------------------- 123 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDK--------------------------------------------- 123 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH---------------------------------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccc---------------------------------------------
Confidence 99999999999999999999999999875532110
Q ss_pred CCcccHHHHHHHHHhhhcCCCchhhhhchHHHHHHHHHHHhhhcCCCCCCCccccccccCCCCCCCccccccCCCCCCCC
Q 009278 152 RSYLDQDDFRNMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEP 231 (538)
Q Consensus 152 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (538)
T Consensus 124 -------------------------------------------------------------------------------- 123 (406)
T 3sf4_A 124 -------------------------------------------------------------------------------- 123 (406)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccHHHHHHHHhHHHHHHHHHHHHHHHhccc--------------------HHHHHHHHHHHHhh------CCCCHH
Q 009278 232 EPMELTEEEKEAKERKEKALKEKEAGNAAYKKKE--------------------FEKAIEHYSSALEL------DDEDIS 285 (538)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~A~~~~~~al~~------~p~~~~ 285 (538)
+..+.++..+|.++...|+ +++|+.++.+++.. .|....
T Consensus 124 ---------------~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 188 (406)
T 3sf4_A 124 ---------------VGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGR 188 (406)
T ss_dssp ---------------HHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ---------------cchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHH
Confidence 1234556777888888888 99999999999876 334457
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCChhHH
Q 009278 286 YLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTL 365 (538)
Q Consensus 286 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 365 (538)
++..+|.++...|++++|+.++++++...|..... ...+.++..+|.++...++ +++|+.++++++...+...
T Consensus 189 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~la~~~~~~g~----~~~A~~~~~~al~~~~~~~-- 261 (406)
T 3sf4_A 189 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDK-AAERRAYSNLGNAYIFLGE----FETASEYYKKTLLLARQLK-- 261 (406)
T ss_dssp HHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHTTC----HHHHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCc-HHHHHHHHHHHHHHHHcCC----hHHHHHHHHHHHHHHHhCc--
Confidence 88999999999999999999999999987765332 2346678888888888888 8888888888887321100
Q ss_pred HhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC------chhHhHHHHHHHHhCCc
Q 009278 366 KKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKD------PRTYSNRAACYTKLGAM 439 (538)
Q Consensus 366 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~~~~ 439 (538)
..+....++..+|.++...|++++|+.+|++++...+.. ..++..+|.++...|++
T Consensus 262 ------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 323 (406)
T 3sf4_A 262 ------------------DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNH 323 (406)
T ss_dssp ------------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred ------------------CchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 111125567778888888888888888888887764433 45677777777777777
Q ss_pred hhHHHHHHHHHhcC------CCchHHHHHHHHHHHHccCHH
Q 009278 440 PEGLKDADKCIELD------PTFSKGYTRKGAIQFFLKEYD 474 (538)
Q Consensus 440 ~~A~~~~~~al~~~------p~~~~~~~~l~~~~~~~g~~~ 474 (538)
++|+.++++++++. +....++..+|.++...|+..
T Consensus 324 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 324 DQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 77777777777663 223556777777777777653
No 32
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1e-27 Score=213.86 Aligned_cols=83 Identities=17% Similarity=0.198 Sum_probs=53.4
Q ss_pred cCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhcC------CCch
Q 009278 384 FDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELD------PTFS 457 (538)
Q Consensus 384 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~------p~~~ 457 (538)
.+|.++.++..+|.++...|++++|+..|+++++..|+++.++..+|.++...|++++|+.+++++++++ |++.
T Consensus 168 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~ 247 (258)
T 3uq3_A 168 RAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAR 247 (258)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHH
T ss_pred cCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchH
Confidence 4445555566666666666666666666666666666666666666666666666666666666666666 6666
Q ss_pred HHHHHHHHH
Q 009278 458 KGYTRKGAI 466 (538)
Q Consensus 458 ~~~~~l~~~ 466 (538)
.++..++.+
T Consensus 248 ~~~~~l~~~ 256 (258)
T 3uq3_A 248 EIDQLYYKA 256 (258)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 666555543
No 33
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.96 E-value=1.7e-27 Score=214.17 Aligned_cols=200 Identities=16% Similarity=0.177 Sum_probs=164.6
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHHHhccCCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCch----HHHHHHHH
Q 009278 3 DEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWS----KGYSRLGA 78 (538)
Q Consensus 3 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~ 78 (538)
+.++..|..++..|+|++|+..|+++++.+|+++.+++.+|.++...|++++|+..+++++. .|.++ .++..+|.
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGK 82 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHH
Confidence 56889999999999999999999999999999999999999999999999999999999999 55444 45999999
Q ss_pred HHhhccCHHHHHHHHHhhhhcCCCcHHHHhhHHHHHHHHhhcccCCCCCCCCcccccccCCchhhcccCCCCCCCcccHH
Q 009278 79 AHLGLQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQD 158 (538)
Q Consensus 79 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (538)
++...|++++|+..|+++++.+|++..+
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~---------------------------------------------------- 110 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRDTTRLDM---------------------------------------------------- 110 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCTHH----------------------------------------------------
T ss_pred HHHHcccHHHHHHHHHHHHhcCcccHHH----------------------------------------------------
Confidence 9999999999999999999999887654
Q ss_pred HHHHHHHhhhcCCCchhhhhchHHHHHHHHHHHhhhcCCCCCCCccccccccCCCCCCCccccccCCCCCCCCCCccccH
Q 009278 159 DFRNMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTE 238 (538)
Q Consensus 159 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (538)
T Consensus 111 -------------------------------------------------------------------------------- 110 (272)
T 3u4t_A 111 -------------------------------------------------------------------------------- 110 (272)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccch
Q 009278 239 EEKEAKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELR 318 (538)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~ 318 (538)
+..+|.++...|++++|+.+|+++++.+|.++.++..+|......+++++|+..++++++..|++
T Consensus 111 --------------~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~- 175 (272)
T 3u4t_A 111 --------------YGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNI- 175 (272)
T ss_dssp --------------HHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-
T ss_pred --------------HHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc-
Confidence 34457778889999999999999999999999999999944555568888888888888888876
Q ss_pred hhHHHHHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHh
Q 009278 319 SDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALT 357 (538)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 357 (538)
..++..+|.++...++ ...+++|+..|++++.
T Consensus 176 ------~~~~~~~~~~~~~~~~-~~~~~~A~~~~~~a~~ 207 (272)
T 3u4t_A 176 ------YIGYLWRARANAAQDP-DTKQGLAKPYYEKLIE 207 (272)
T ss_dssp ------HHHHHHHHHHHHHHST-TCSSCTTHHHHHHHHH
T ss_pred ------hHHHHHHHHHHHHcCc-chhhHHHHHHHHHHHH
Confidence 3444445554444432 1114445555555555
No 34
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.96 E-value=8.2e-27 Score=210.09 Aligned_cols=262 Identities=10% Similarity=0.089 Sum_probs=225.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHhccCCCc-hHHHHHHHHHHhhccCHHHHHHHHHhhhhcCCCcHHHHhhHHHHHHHHhhcc
Q 009278 43 SAAHASLHNYADALADAKKTVELKPDW-SKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASF 121 (538)
Q Consensus 43 a~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 121 (538)
....+..|+|..|+..+++....+|++ .++...++++|..+|++++|+..++.. +|.
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~---~~~------------------- 63 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS---SAP------------------- 63 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT---SCH-------------------
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc---CCh-------------------
Confidence 345678999999999999999999987 468888999999999999999877541 221
Q ss_pred cCCCCCCCCcccccccCCchhhcccCCCCCCCcccHHHHHHHHHhhhcCCCchhhhhchHHHHHHHHHHHhhhcCCCCCC
Q 009278 122 RSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRNMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGG 201 (538)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (538)
T Consensus 64 -------------------------------------------------------------------------------- 63 (291)
T 3mkr_A 64 -------------------------------------------------------------------------------- 63 (291)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccccccCCCCCCCccccccCCCCCCCCCCccccHHHHHHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhh--
Q 009278 202 DDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKEAKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALEL-- 279 (538)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-- 279 (538)
...++..++..+...+++++|+..+++++..
T Consensus 64 -----------------------------------------------~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~ 96 (291)
T 3mkr_A 64 -----------------------------------------------ELQAVRMFAEYLASHSRRDAIVAELDREMSRSV 96 (291)
T ss_dssp -----------------------------------------------HHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCC
T ss_pred -----------------------------------------------hHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccc
Confidence 2233455677888889999999999999876
Q ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcC
Q 009278 280 DDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEH 359 (538)
Q Consensus 280 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 359 (538)
+|+++.+++.+|.++...|++++|+..+++ |++ ..++..+|.++..+|+ +++|+..+++++.
T Consensus 97 ~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~-------~~~~~~l~~~~~~~g~----~~~A~~~l~~~~~-- 158 (291)
T 3mkr_A 97 DVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDS-------LECMAMTVQILLKLDR----LDLARKELKKMQD-- 158 (291)
T ss_dssp CCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCS-------HHHHHHHHHHHHHTTC----HHHHHHHHHHHHH--
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCC-------HHHHHHHHHHHHHCCC----HHHHHHHHHHHHh--
Confidence 699999999999999999999999999988 655 5677788888888888 9999999999998
Q ss_pred CChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHH--HHHHhcCChHHHHHHHHHHHhcCCCCchhHhHHHHHHHHhC
Q 009278 360 RNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKG--NEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLG 437 (538)
Q Consensus 360 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la--~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~ 437 (538)
.+|+........+ .++...|++++|+..|+++++..|+++.+++++|.++..+|
T Consensus 159 ------------------------~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g 214 (291)
T 3mkr_A 159 ------------------------QDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQG 214 (291)
T ss_dssp ------------------------HCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTT
T ss_pred ------------------------hCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Confidence 6666654444333 44445689999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHhcCCCchHHHHHHHHHHHHccCHHH-HHHHHHHHhccCCCCHHHHH
Q 009278 438 AMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDK-ALETYQEGLKHDPQNQELLD 495 (538)
Q Consensus 438 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~-A~~~~~~al~~~p~~~~~~~ 495 (538)
++++|+..|+++++.+|+++.++.++|.++...|+..+ +..+++++++++|+++.+..
T Consensus 215 ~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d 273 (291)
T 3mkr_A 215 RWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKE 273 (291)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHH
Confidence 99999999999999999999999999999999999976 57899999999999998764
No 35
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.96 E-value=9e-28 Score=229.51 Aligned_cols=315 Identities=15% Similarity=0.132 Sum_probs=262.9
Q ss_pred cchHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCch----HHHHHHHHHHhhccCHHHHHHHHHhhhhcCCCcHHHHhh
Q 009278 34 DNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWS----KGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNEALKSG 109 (538)
Q Consensus 34 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 109 (538)
....+++.+|.++...|++++|+..|++++...|+++ .++..+|.++...|++++|+..|++++.+.+...
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~----- 81 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIG----- 81 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-----
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcc-----
Confidence 3567889999999999999999999999999999884 6889999999999999999999999986522100
Q ss_pred HHHHHHHHhhcccCCCCCCCCcccccccCCchhhcccCCCCCCCcccHHHHHHHHHhhhcCCCchhhhhchHHHHHHHHH
Q 009278 110 LADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRNMMKDIQRNPNNLNLYLKDQRVMQALGV 189 (538)
Q Consensus 110 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 189 (538)
T Consensus 82 -------------------------------------------------------------------------------- 81 (406)
T 3sf4_A 82 -------------------------------------------------------------------------------- 81 (406)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhhhcCCCCCCCccccccccCCCCCCCccccccCCCCCCCCCCccccHHHHHHHHhHHHHHHHHHHHHHHHhcccHHHH
Q 009278 190 LLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKEAKERKEKALKEKEAGNAAYKKKEFEKA 269 (538)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 269 (538)
..+..+.++..+|.++...|++++|
T Consensus 82 -------------------------------------------------------~~~~~~~~~~~la~~~~~~g~~~~A 106 (406)
T 3sf4_A 82 -------------------------------------------------------DQLGEAKASGNLGNTLKVLGNFDEA 106 (406)
T ss_dssp -------------------------------------------------------CHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred -------------------------------------------------------ccHHHHHHHHHHHHHHHHcCCHHHH
Confidence 0134567788899999999999999
Q ss_pred HHHHHHHHhhCCCC------HHHHHHHHHHHHHhCC--------------------HHHHHHHHHHHHHccccchhhHHH
Q 009278 270 IEHYSSALELDDED------ISYLTNRAAVYLEMGK--------------------YEECIKDCDKAVERGRELRSDFKM 323 (538)
Q Consensus 270 ~~~~~~al~~~p~~------~~~~~~la~~~~~~~~--------------------~~~A~~~~~~~~~~~~~~~~~~~~ 323 (538)
+.+++++++..|.. ..++..+|.++...|+ +++|+..+++++...+... ....
T Consensus 107 ~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~-~~~~ 185 (406)
T 3sf4_A 107 IVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALG-DRAA 185 (406)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTT-CHHH
T ss_pred HHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhcc-CcHH
Confidence 99999999987653 4589999999999999 9999999999998755432 2233
Q ss_pred HHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcC
Q 009278 324 IARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQ 403 (538)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 403 (538)
.+.++..+|.++...++ +++|+..+++++...+... ..+....++..+|.++...|
T Consensus 186 ~~~~~~~la~~~~~~g~----~~~A~~~~~~al~~~~~~~--------------------~~~~~~~~~~~la~~~~~~g 241 (406)
T 3sf4_A 186 QGRAFGNLGNTHYLLGN----FRDAVIAHEQRLLIAKEFG--------------------DKAAERRAYSNLGNAYIFLG 241 (406)
T ss_dssp HHHHHHHHHHHHHHHTB----HHHHHHHHHHHHHHHHHTT--------------------CHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHccC----HHHHHHHHHHHHHHHHhcC--------------------CcHHHHHHHHHHHHHHHHcC
Confidence 47889999999999999 9999999999998422100 11123458899999999999
Q ss_pred ChHHHHHHHHHHHhcCCCC------chhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCc------hHHHHHHHHHHHHcc
Q 009278 404 KYPEAIQHYTESLRRNPKD------PRTYSNRAACYTKLGAMPEGLKDADKCIELDPTF------SKGYTRKGAIQFFLK 471 (538)
Q Consensus 404 ~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g 471 (538)
++++|+.++++++...|.. ..++..+|.++...|++++|+.++++++.+.+.. ..++..+|.++...|
T Consensus 242 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g 321 (406)
T 3sf4_A 242 EFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALG 321 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcC
Confidence 9999999999999887654 6788999999999999999999999999885443 668899999999999
Q ss_pred CHHHHHHHHHHHhccC------CCCHHHHHHHHHHHHHhhhhccCCCC
Q 009278 472 EYDKALETYQEGLKHD------PQNQELLDGVRRCVQQINKAGRGELS 513 (538)
Q Consensus 472 ~~~~A~~~~~~al~~~------p~~~~~~~~l~~~~~~~~~~~~a~~~ 513 (538)
++++|+.+|++++++. |....++..++.++..+|+...+...
T Consensus 322 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~ 369 (406)
T 3sf4_A 322 NHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTNNS 369 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSCC---
T ss_pred CHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHHHHHH
Confidence 9999999999999884 33477899999999999988665544
No 36
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.96 E-value=2.7e-25 Score=217.16 Aligned_cols=364 Identities=13% Similarity=0.066 Sum_probs=292.7
Q ss_pred HHHHHHHHHhccCCcchHHHHHHHHHHHh----cCCHHHHHHHHHHHhccCCCchHHHHHHHHHHhh----ccCHHHHHH
Q 009278 20 AAVRHFTEAISLSPDNHVLYSNRSAAHAS----LHNYADALADAKKTVELKPDWSKGYSRLGAAHLG----LQDYIEAVN 91 (538)
Q Consensus 20 ~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~ 91 (538)
.++..+.++.+ +.++.+++.+|.+|.. .+++++|+..|+++++. .++.+++.+|.+|.. .+++++|+.
T Consensus 25 ~~~~~~~~~a~--~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~ 100 (490)
T 2xm6_A 25 VNLEQLKQKAE--SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVI 100 (490)
T ss_dssp CCHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 34666666654 5689999999999999 99999999999999876 678999999999999 999999999
Q ss_pred HHHhhhhcCCCcHHHHhhHHHHHHHHhhcccCCCCCCCCcccccccCCchhhcccCCCCCCCcccHHHHHHHHHhhhcCC
Q 009278 92 SYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRNMMKDIQRNP 171 (538)
Q Consensus 92 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 171 (538)
+|+++.+. .++.++..++.++..-.... .....++..+.++..
T Consensus 101 ~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~--------------------------------~~~~~A~~~~~~a~~--- 143 (490)
T 2xm6_A 101 WYKKAALK--GLPQAQQNLGVMYHEGNGVK--------------------------------VDKAESVKWFRLAAE--- 143 (490)
T ss_dssp HHHHHHHT--TCHHHHHHHHHHHHHTSSSC--------------------------------CCHHHHHHHHHHHHH---
T ss_pred HHHHHHHC--CCHHHHHHHHHHHHcCCCCC--------------------------------CCHHHHHHHHHHHHH---
Confidence 99999875 57888888888876521000 000111111111111
Q ss_pred CchhhhhchHHHHHHHHHHHhhhcCCCCCCCccccccccCCCCCCCccccccCCCCCCCCCCccccHHHHHHHHhHHHHH
Q 009278 172 NNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKEAKERKEKAL 251 (538)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (538)
...+.
T Consensus 144 ---------------------------------------------------------------------------~~~~~ 148 (490)
T 2xm6_A 144 ---------------------------------------------------------------------------QGRDS 148 (490)
T ss_dssp ---------------------------------------------------------------------------TTCHH
T ss_pred ---------------------------------------------------------------------------CCCHH
Confidence 12456
Q ss_pred HHHHHHHHHHh----cccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHccccchhhHHH
Q 009278 252 KEKEAGNAAYK----KKEFEKAIEHYSSALELDDEDISYLTNRAAVYLE----MGKYEECIKDCDKAVERGRELRSDFKM 323 (538)
Q Consensus 252 ~~~~~~~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~ 323 (538)
++..+|.+|.. .+++++|+.+|+++++. .++.+++.+|.+|.. .+++++|+.+|+++++..+
T Consensus 149 a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~-------- 218 (490)
T 2xm6_A 149 GQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGD-------- 218 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC--------
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCCC--------
Confidence 78889999998 89999999999999886 579999999999999 8999999999999998642
Q ss_pred HHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCCh------hHHHh----hhhHHHHHHHHHHHHHcCCCchHHHH
Q 009278 324 IARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNP------DTLKK----LNEAEKAKKELEQQEIFDPKIADEER 393 (538)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~ 393 (538)
..++..+|.++..-....+++++|+.+|++++...... ..+.. .+++++|+..|+++.+. .++.+++
T Consensus 219 -~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~--~~~~a~~ 295 (490)
T 2xm6_A 219 -ELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ--GNSDGQY 295 (490)
T ss_dssp -HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT--TCHHHHH
T ss_pred -HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc--CCHHHHH
Confidence 46777888888762212234999999999999864432 13333 57889999999999765 6788999
Q ss_pred HHHHHHHhc-----CChHHHHHHHHHHHhcCCCCchhHhHHHHHHHHhC---CchhHHHHHHHHHhcCCCchHHHHHHHH
Q 009278 394 EKGNEFFKQ-----QKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLG---AMPEGLKDADKCIELDPTFSKGYTRKGA 465 (538)
Q Consensus 394 ~la~~~~~~-----~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~l~~ 465 (538)
.+|.++... +++++|+.+|+++++. .++.+++.+|.+|...| ++++|+.+|+++++. .++.+++.+|.
T Consensus 296 ~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~ 371 (490)
T 2xm6_A 296 YLAHLYDKGAEGVAKNREQAISWYTKSAEQ--GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGN 371 (490)
T ss_dssp HHHHHHHHCBTTBCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHH
T ss_pred HHHHHHHcCCCCCcCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHH
Confidence 999999998 9999999999999986 46789999999999866 899999999999987 67999999999
Q ss_pred HHHH----ccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHH----hhhhccCCCChHHHH
Q 009278 466 IQFF----LKEYDKALETYQEGLKHDPQNQELLDGVRRCVQQ----INKAGRGELSPEELK 518 (538)
Q Consensus 466 ~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~ 518 (538)
+|.. .+++++|+.+|+++.+. .++.++..++.++.. .++..+|...++++.
T Consensus 372 ~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 430 (490)
T 2xm6_A 372 ALLQGKGVKKDEQQAAIWMRKAAEQ--GLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTAS 430 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 9999 89999999999999986 468999999999988 666666664444333
No 37
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.96 E-value=1.6e-27 Score=205.49 Aligned_cols=199 Identities=14% Similarity=0.184 Sum_probs=177.1
Q ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCC
Q 009278 281 DEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHR 360 (538)
Q Consensus 281 p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 360 (538)
|.++.+++.+|.++...|++++|+..|+++++.+|++ ..++..+|.++...|+ +++|+..|++++.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-------~~a~~~lg~~~~~~g~----~~~A~~~~~~al~--- 67 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQD-------PEALYWLARTQLKLGL----VNPALENGKTLVA--- 67 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSC-------HHHHHHHHHHHHHTTC----HHHHHHHHHHHHH---
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCC----HHHHHHHHHHHHH---
Confidence 7888999999999999999999999999999999999 6777788888888888 9999999999999
Q ss_pred ChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhc-----------CChHHHHHHHHHHHhcCCCCchhHhHH
Q 009278 361 NPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQ-----------QKYPEAIQHYTESLRRNPKDPRTYSNR 429 (538)
Q Consensus 361 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~-----------~~~~~A~~~~~~al~~~~~~~~~~~~l 429 (538)
.+|+++.++..+|.++... |++++|+..|+++++++|+++.++..+
T Consensus 68 -----------------------~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~l 124 (217)
T 2pl2_A 68 -----------------------RTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQR 124 (217)
T ss_dssp -----------------------HCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred -----------------------hCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 8999999999999999999 999999999999999999999999999
Q ss_pred HHHHHHhCCchhHHHHHHHHHhcCCCchHHHHHHHHHHHHccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhcc
Q 009278 430 AACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDGVRRCVQQINKAGR 509 (538)
Q Consensus 430 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~ 509 (538)
|.++...|++++|+..|+++++++ +++.++..+|.++...|++++|+..|+++++++|+++.++..++.++..+|++++
T Consensus 125 g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~ 203 (217)
T 2pl2_A 125 GLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEE 203 (217)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC------
T ss_pred HHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHH
Confidence 999999999999999999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHH
Q 009278 510 GELSPEEL 517 (538)
Q Consensus 510 a~~~~~~~ 517 (538)
|...+++.
T Consensus 204 A~~~~~~~ 211 (217)
T 2pl2_A 204 AARAAALE 211 (217)
T ss_dssp --------
T ss_pred HHHHHHHH
Confidence 98775544
No 38
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.96 E-value=4.9e-26 Score=224.73 Aligned_cols=383 Identities=11% Similarity=0.018 Sum_probs=278.1
Q ss_pred HHHHhccCCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHHHHHhhccCHHHHHHHHHhhhhcCCCcH
Q 009278 25 FTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNE 104 (538)
Q Consensus 25 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 104 (538)
|+++++.+|.+..+|..++.. ...|++++|...|++++..+|.+..+|..++..+...|++++|...|++++...| +.
T Consensus 2 le~al~~~P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p-~~ 79 (530)
T 2ooe_A 2 AEKKLEENPYDLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL-HI 79 (530)
T ss_dssp HHHHHHHCTTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC-CH
T ss_pred hhhHhhhCCCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-Ch
Confidence 678899999999999999984 7899999999999999999999999999999999999999999999999999999 57
Q ss_pred HHHhhHHHHHHH-HhhcccCCCCCCCCcccccccCCchhhcccCCCCCCCcccHHHHHHHHHhhhcCCCchhhhhchHHH
Q 009278 105 ALKSGLADAKAA-ASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRNMMKDIQRNPNNLNLYLKDQRV 183 (538)
Q Consensus 105 ~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 183 (538)
+.|..++..... .|....++ -.....+...+..+..+|.+.
T Consensus 80 ~lw~~~~~~~~~~~~~~~~a~-----------------------------~~~~~~~~~al~~~g~~~~~~--------- 121 (530)
T 2ooe_A 80 DLWKCYLSYVRETKGKLPSYK-----------------------------EKMAQAYDFALDKIGMEIMSY--------- 121 (530)
T ss_dssp HHHHHHHHHHHHHTTTSTTHH-----------------------------HHHHHHHHHHHHHTTTSTTCH---------
T ss_pred HHHHHHHHHHHHHccchhhHH-----------------------------HHHHHHHHHHHHHCCCCcccH---------
Confidence 788777754332 22210000 000011222222222233322
Q ss_pred HHHHHHHHhhhcCCCCCCCccccccccCCCCCCCccccccCCCCCCCCCCccccHHHHHHHHhHHHHHHHHHHHHHHH--
Q 009278 184 MQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKEAKERKEKALKEKEAGNAAY-- 261 (538)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 261 (538)
..|...+....
T Consensus 122 -------------------------------------------------------------------~~w~~~~~~~~~~ 134 (530)
T 2ooe_A 122 -------------------------------------------------------------------QIWVDYINFLKGV 134 (530)
T ss_dssp -------------------------------------------------------------------HHHHHHHHHHHHS
T ss_pred -------------------------------------------------------------------HHHHHHHHHHhcC
Confidence 22333333332
Q ss_pred -------hcccHHHHHHHHHHHHhhCCCCH--HHHHHHHHHH-------------HHhCCHHHHHHHHHH------HHHc
Q 009278 262 -------KKKEFEKAIEHYSSALELDDEDI--SYLTNRAAVY-------------LEMGKYEECIKDCDK------AVER 313 (538)
Q Consensus 262 -------~~~~~~~A~~~~~~al~~~p~~~--~~~~~la~~~-------------~~~~~~~~A~~~~~~------~~~~ 313 (538)
..|++++|..+|++++. .|... ..|...+... ...+++..|...+.. .++.
T Consensus 135 ~~~~~~~~~~~~~~a~~~y~~al~-~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~ 213 (530)
T 2ooe_A 135 EAVGSYAENQRITAVRRVYQRGCV-NPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDR 213 (530)
T ss_dssp CCCSSTTHHHHHHHHHHHHHHHTT-SCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCS
T ss_pred CCcccHHHHhHHHHHHHHHHHHHh-chhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcc
Confidence 26899999999999999 57643 2333222221 134567778777765 3332
Q ss_pred -----cccchhhHHHHHHHHHHhHHHHHHhhh--cccCh----hHHHHHHHHHHhcCCChh--------HHHh-------
Q 009278 314 -----GRELRSDFKMIARALTRKGTALVKMAK--CSKDY----EPAIETFQKALTEHRNPD--------TLKK------- 367 (538)
Q Consensus 314 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~----~~A~~~~~~~~~~~~~~~--------~~~~------- 367 (538)
.|............|..... ...++ ..++. ..++..|++++...|... .+..
T Consensus 214 ~~~~~~p~~~~~~~~~~~~w~~~~~--~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~ 291 (530)
T 2ooe_A 214 NAPSVPPQNTPQEAQQVDMWKKYIQ--WEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAE 291 (530)
T ss_dssp SSCCCCCC--CCHHHHHHHHHHHHH--HHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHT
T ss_pred ccccCCCCCChhHHHHHHHHHHHHH--HHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhh
Confidence 22211111111122222211 11111 00112 478889999999887632 2222
Q ss_pred hhhHH-------HHHHHHHHHHH-cCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCc-hhHhHHHHHHHHhCC
Q 009278 368 LNEAE-------KAKKELEQQEI-FDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDP-RTYSNRAACYTKLGA 438 (538)
Q Consensus 368 ~~~~~-------~a~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~-~~~~~la~~~~~~~~ 438 (538)
.|+++ +|...+++++. ..|++..+|..+|.++...|++++|...|+++++..|.++ .+|..+|.++.+.|+
T Consensus 292 ~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 371 (530)
T 2ooe_A 292 KGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEG 371 (530)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcC
Confidence 46665 89999999997 7999999999999999999999999999999999999885 699999999999999
Q ss_pred chhHHHHHHHHHhcCCCchHHHHHHHHHH-HHccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhccCCCChHHH
Q 009278 439 MPEGLKDADKCIELDPTFSKGYTRKGAIQ-FFLKEYDKALETYQEGLKHDPQNQELLDGVRRCVQQINKAGRGELSPEEL 517 (538)
Q Consensus 439 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~-~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 517 (538)
+++|...|+++++..|.....+...+.+. ...|++++|...|+++++..|+++.+|..++.++...|+.++|...++++
T Consensus 372 ~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~a 451 (530)
T 2ooe_A 372 IKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERV 451 (530)
T ss_dssp HHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHH
Confidence 99999999999999998888887777663 46999999999999999999999999999999999999888877554433
No 39
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.95 E-value=2.6e-26 Score=213.34 Aligned_cols=285 Identities=23% Similarity=0.278 Sum_probs=198.4
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHHHhccCCcc----hHHHHHHHHHHHhcCCHHHHHHHHHHHhcc------CCCchHH
Q 009278 3 DEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDN----HVLYSNRSAAHASLHNYADALADAKKTVEL------KPDWSKG 72 (538)
Q Consensus 3 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~ 72 (538)
..++..|..++..|++++|+..|++++..+|.+ ..++..+|.++...|++++|+..+++++.+ .|....+
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 568889999999999999999999999999988 478899999999999999999999999887 4556789
Q ss_pred HHHHHHHHhhccCHHHHHHHHHhhhhcCCCcHHHHhhHHHHHHHHhhcccCCCCCCCCcccccccCCchhhcccCCCCCC
Q 009278 73 YSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTR 152 (538)
Q Consensus 73 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (538)
+..+|.++...|++++|+..+++++++.|.....
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~---------------------------------------------- 119 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDK---------------------------------------------- 119 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH----------------------------------------------
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCc----------------------------------------------
Confidence 9999999999999999999999998764432110
Q ss_pred CcccHHHHHHHHHhhhcCCCchhhhhchHHHHHHHHHHHhhhcCCCCCCCccccccccCCCCCCCccccccCCCCCCCCC
Q 009278 153 SYLDQDDFRNMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPE 232 (538)
Q Consensus 153 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (538)
T Consensus 120 -------------------------------------------------------------------------------- 119 (338)
T 3ro2_A 120 -------------------------------------------------------------------------------- 119 (338)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccHHHHHHHHhHHHHHHHHHHHHHHHhccc--------------------HHHHHHHHHHHHhh------CCCCHHH
Q 009278 233 PMELTEEEKEAKERKEKALKEKEAGNAAYKKKE--------------------FEKAIEHYSSALEL------DDEDISY 286 (538)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~A~~~~~~al~~------~p~~~~~ 286 (538)
+..+.++..+|.++...|+ +++|+.++++++.. .|....+
T Consensus 120 --------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 185 (338)
T 3ro2_A 120 --------------VGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRA 185 (338)
T ss_dssp --------------HHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred --------------hHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 1234456667777777777 89999999988876 2334567
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCChhHHH
Q 009278 287 LTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLK 366 (538)
Q Consensus 287 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 366 (538)
+..+|.++...|++++|+.++++++...+.... ....+.++..+|.++...++ +++|+..+++++...+...
T Consensus 186 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~----~~~A~~~~~~al~~~~~~~--- 257 (338)
T 3ro2_A 186 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD-KAAERRAYSNLGNAYIFLGE----FETASEYYKKTLLLARQLK--- 257 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHHTC----HHHHHHHHHHHHHHHHHTT---
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHcCC----HHHHHHHHHHHHHHHHhhc---
Confidence 888999999999999999999999887665322 22235566666766666666 7777777766665211100
Q ss_pred hhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC------chhHhHHHHHHHHhCCch
Q 009278 367 KLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKD------PRTYSNRAACYTKLGAMP 440 (538)
Q Consensus 367 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~~~~~ 440 (538)
..+....++..+|.++...|++++|+.++++++...+.. ..++..+|.++...|+++
T Consensus 258 -----------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 320 (338)
T 3ro2_A 258 -----------------DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHD 320 (338)
T ss_dssp -----------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred -----------------chhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 001113444555555555555555555555555443321 123344444444444444
Q ss_pred hHHHHHHHHHhc
Q 009278 441 EGLKDADKCIEL 452 (538)
Q Consensus 441 ~A~~~~~~al~~ 452 (538)
+|..++++++++
T Consensus 321 ~A~~~~~~a~~~ 332 (338)
T 3ro2_A 321 QAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
No 40
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.95 E-value=2.5e-26 Score=219.89 Aligned_cols=211 Identities=21% Similarity=0.294 Sum_probs=166.1
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHHHhccCCcch----HHHHHHHHHHHhcCCHHHHHHHHHHHhcc------CCCchH
Q 009278 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNH----VLYSNRSAAHASLHNYADALADAKKTVEL------KPDWSK 71 (538)
Q Consensus 2 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~ 71 (538)
+..++.+|..++..|+|++|+..|++++...|.++ .++..+|.++...|++++|+..|++++.+ .|....
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 35678899999999999999999999999999986 58999999999999999999999999988 577788
Q ss_pred HHHHHHHHHhhccCHHHHHHHHHhhhhcCCCcHHHHhhHHHHHHHHhhcccCCCCCCCCcccccccCCchhhcccCCCCC
Q 009278 72 GYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTT 151 (538)
Q Consensus 72 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (538)
++..+|.++...|++++|+..|++++.+.+...
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~----------------------------------------------- 160 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLG----------------------------------------------- 160 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT-----------------------------------------------
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhh-----------------------------------------------
Confidence 999999999999999999999999987532110
Q ss_pred CCcccHHHHHHHHHhhhcCCCchhhhhchHHHHHHHHHHHhhhcCCCCCCCccccccccCCCCCCCccccccCCCCCCCC
Q 009278 152 RSYLDQDDFRNMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEP 231 (538)
Q Consensus 152 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (538)
T Consensus 161 -------------------------------------------------------------------------------- 160 (411)
T 4a1s_A 161 -------------------------------------------------------------------------------- 160 (411)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccHHHHHHHHhHHHHHHHHHHHHHHHhccc-----------------HHHHHHHHHHHHhhC------CCCHHHHH
Q 009278 232 EPMELTEEEKEAKERKEKALKEKEAGNAAYKKKE-----------------FEKAIEHYSSALELD------DEDISYLT 288 (538)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~A~~~~~~al~~~------p~~~~~~~ 288 (538)
..+....++..+|.++...|+ +++|+.+++++++.. +....++.
T Consensus 161 -------------~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 227 (411)
T 4a1s_A 161 -------------DRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACG 227 (411)
T ss_dssp -------------CHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred -------------chHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 012355667788888888888 999999999988763 23356788
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHh
Q 009278 289 NRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALT 357 (538)
Q Consensus 289 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 357 (538)
.+|.++...|++++|+.++++++...+.... ....+.++..+|.++...++ +++|+..+++++.
T Consensus 228 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~la~~~~~~g~----~~~A~~~~~~al~ 291 (411)
T 4a1s_A 228 NLGNTYYLLGDFQAAIEHHQERLRIAREFGD-RAAERRANSNLGNSHIFLGQ----FEDAAEHYKRTLA 291 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHTTTC----HHHHHHHHHHHHH
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHCcC----HHHHHHHHHHHHH
Confidence 8899999999999999999998887765322 12224455555555555555 5666655555555
No 41
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.95 E-value=2.8e-26 Score=219.53 Aligned_cols=292 Identities=17% Similarity=0.183 Sum_probs=246.1
Q ss_pred cchHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCch----HHHHHHHHHHhhccCHHHHHHHHHhhhhcCCCcHHHHhh
Q 009278 34 DNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWS----KGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNEALKSG 109 (538)
Q Consensus 34 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 109 (538)
.....++.+|.++...|++++|+..|++++...|+++ .++..+|.++...|++++|+..|++++++....
T Consensus 46 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~------ 119 (411)
T 4a1s_A 46 SMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSM------ 119 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT------
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc------
Confidence 4457788999999999999999999999999999986 589999999999999999999999998752110
Q ss_pred HHHHHHHHhhcccCCCCCCCCcccccccCCchhhcccCCCCCCCcccHHHHHHHHHhhhcCCCchhhhhchHHHHHHHHH
Q 009278 110 LADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRNMMKDIQRNPNNLNLYLKDQRVMQALGV 189 (538)
Q Consensus 110 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 189 (538)
T Consensus 120 -------------------------------------------------------------------------------- 119 (411)
T 4a1s_A 120 -------------------------------------------------------------------------------- 119 (411)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhhhcCCCCCCCccccccccCCCCCCCccccccCCCCCCCCCCccccHHHHHHHHhHHHHHHHHHHHHHHHhcccHHHH
Q 009278 190 LLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKEAKERKEKALKEKEAGNAAYKKKEFEKA 269 (538)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 269 (538)
...+..+.++..+|.++...|++++|
T Consensus 120 ------------------------------------------------------~~~~~~~~~~~~l~~~~~~~g~~~~A 145 (411)
T 4a1s_A 120 ------------------------------------------------------NDRLGEAKSSGNLGNTLKVMGRFDEA 145 (411)
T ss_dssp ------------------------------------------------------TCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ------------------------------------------------------cCchHHHHHHHHHHHHHHHCCCHHHH
Confidence 00134667788899999999999999
Q ss_pred HHHHHHHHhh------CCCCHHHHHHHHHHHHHhCC-----------------HHHHHHHHHHHHHccccchhhHHHHHH
Q 009278 270 IEHYSSALEL------DDEDISYLTNRAAVYLEMGK-----------------YEECIKDCDKAVERGRELRSDFKMIAR 326 (538)
Q Consensus 270 ~~~~~~al~~------~p~~~~~~~~la~~~~~~~~-----------------~~~A~~~~~~~~~~~~~~~~~~~~~~~ 326 (538)
+.+|++++.. .|....++..+|.++...|+ +++|+.++++++.+.+.... ....+.
T Consensus 146 ~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~-~~~~~~ 224 (411)
T 4a1s_A 146 AICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGD-RGAQGR 224 (411)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTC-HHHHHH
T ss_pred HHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCC-HHHHHH
Confidence 9999999988 55667899999999999999 99999999999987654322 233477
Q ss_pred HHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcCChH
Q 009278 327 ALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYP 406 (538)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 406 (538)
++..+|.++...++ +++|+.++++++...+... ..+....++..+|.++...|+++
T Consensus 225 ~~~~la~~~~~~g~----~~~A~~~~~~al~~~~~~~--------------------~~~~~~~~~~~la~~~~~~g~~~ 280 (411)
T 4a1s_A 225 ACGNLGNTYYLLGD----FQAAIEHHQERLRIAREFG--------------------DRAAERRANSNLGNSHIFLGQFE 280 (411)
T ss_dssp HHHHHHHHHHHTTC----HHHHHHHHHHHHHHHHHHT--------------------CHHHHHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHHHHHHHcCC----hHHHHHHHHHHHHHHHhcC--------------------CcHHHHHHHHHHHHHHHHCcCHH
Confidence 89999999999999 9999999999998422100 11122457889999999999999
Q ss_pred HHHHHHHHHHhcCCCC------chhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCc------hHHHHHHHHHHHHccCHH
Q 009278 407 EAIQHYTESLRRNPKD------PRTYSNRAACYTKLGAMPEGLKDADKCIELDPTF------SKGYTRKGAIQFFLKEYD 474 (538)
Q Consensus 407 ~A~~~~~~al~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~~~ 474 (538)
+|+.+|++++...+.. ..++..+|.++...|++++|+.++++++...+.. ..++..+|.++...|+++
T Consensus 281 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 360 (411)
T 4a1s_A 281 DAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHE 360 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHH
Confidence 9999999999887643 5788999999999999999999999999885433 458999999999999999
Q ss_pred HHHHHHHHHhccCCCC
Q 009278 475 KALETYQEGLKHDPQN 490 (538)
Q Consensus 475 ~A~~~~~~al~~~p~~ 490 (538)
+|..+|++++++.+..
T Consensus 361 ~A~~~~~~al~~~~~~ 376 (411)
T 4a1s_A 361 RALKYAEQHLQLAXXX 376 (411)
T ss_dssp HHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHHHHhhc
Confidence 9999999999998753
No 42
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.94 E-value=6.4e-26 Score=200.15 Aligned_cols=221 Identities=20% Similarity=0.238 Sum_probs=185.9
Q ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHHHH
Q 009278 248 EKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARA 327 (538)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 327 (538)
..+..++.+|..+...|++++|+.+|+++++.+|.+..++..+|.++...|++++|+..+++++...|.+ ..+
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~ 93 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSA-------ATA 93 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc-------hHH
Confidence 4677889999999999999999999999999999999999999999999999999999999999999987 567
Q ss_pred HHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcCChHH
Q 009278 328 LTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPE 407 (538)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 407 (538)
+..+|.++...++ +++|+..+++++. ..|.++.++..+|.++...|++++
T Consensus 94 ~~~la~~~~~~~~----~~~A~~~~~~~~~--------------------------~~~~~~~~~~~~a~~~~~~~~~~~ 143 (243)
T 2q7f_A 94 YYGAGNVYVVKEM----YKEAKDMFEKALR--------------------------AGMENGDLFYMLGTVLVKLEQPKL 143 (243)
T ss_dssp HHHHHHHHHHTTC----HHHHHHHHHHHHH--------------------------HTCCSHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHhcc----HHHHHHHHHHHHH--------------------------hCCCCHHHHHHHHHHHHHhccHHH
Confidence 7778888888888 9999999999998 788889999999999999999999
Q ss_pred HHHHHHHHHhcCCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCchHHHHHHHHHHHHccCHHHHHHHHHHHhccC
Q 009278 408 AIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHD 487 (538)
Q Consensus 408 A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 487 (538)
|+..++++++..|.++.++..+|.++...|++++|+..+++++..+|+++.++..+|.++...|++++|+.+|+++++++
T Consensus 144 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 144 ALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhh
Q 009278 488 PQNQELLDGVRRCVQQIN 505 (538)
Q Consensus 488 p~~~~~~~~l~~~~~~~~ 505 (538)
|+++.++..++.+....+
T Consensus 224 p~~~~~~~~~~~l~~~~~ 241 (243)
T 2q7f_A 224 PDHMLALHAKKLLGHHHH 241 (243)
T ss_dssp TTCHHHHHHHTC------
T ss_pred cchHHHHHHHHHHHhhcc
Confidence 999999988877765544
No 43
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.94 E-value=4.6e-25 Score=211.93 Aligned_cols=359 Identities=14% Similarity=0.078 Sum_probs=248.8
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHhccCCcchHHHHHHHHHHHhcCCH---HHHHHHHHHHhccCCCchHHHHHHHHHHhh
Q 009278 6 KAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNY---ADALADAKKTVELKPDWSKGYSRLGAAHLG 82 (538)
Q Consensus 6 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 82 (538)
...|..+++.|++++|+..|+++.+. .++.+++.+|.+|...|++ ++|+..|+++++. ++.+++.+|.++..
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa~~--g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLAEL--GYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--TCCTGGGTCC-------------------------------CHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHHh
Confidence 56799999999999999999999765 5788999999999999999 9999999999976 77899999997666
Q ss_pred cc-----CHHHHHHHHHhhhhcCCCcHHHHhhHHHHHHHHhhcccCCCCCCCCcccccccCCchhhcccCCCCCCCcccH
Q 009278 83 LQ-----DYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQ 157 (538)
Q Consensus 83 ~~-----~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (538)
.+ ++++|+.+|+++++ ++++.++..++.++...+......
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~~~~~~~~~--------------------------------- 126 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFA--NGEGNTLIPLAMLYLQYPHSFPNV--------------------------------- 126 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHH--TTCSSCHHHHHHHHHHCGGGCTTC---------------------------------
T ss_pred CCCCCCcCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHhCCCCCCCH---------------------------------
Confidence 65 88999999999998 455668888988887764431100
Q ss_pred HHHHHHHHhhhcCCCchhhhhchHHHHHHHHHHHhhhcCCCCCCCccccccccCCCCCCCccccccCCCCCCCCCCcccc
Q 009278 158 DDFRNMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELT 237 (538)
Q Consensus 158 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (538)
..+..+...
T Consensus 127 ~a~~~~~~a----------------------------------------------------------------------- 135 (452)
T 3e4b_A 127 NAQQQISQW----------------------------------------------------------------------- 135 (452)
T ss_dssp CHHHHHHHH-----------------------------------------------------------------------
T ss_pred HHHHHHHHH-----------------------------------------------------------------------
Confidence 000000000
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHhccc----HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhC---CHHHHHHHHHHH
Q 009278 238 EEEKEAKERKEKALKEKEAGNAAYKKKE----FEKAIEHYSSALELDDEDISYLTNRAAVYLEMG---KYEECIKDCDKA 310 (538)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~---~~~~A~~~~~~~ 310 (538)
..+..+.+++.+|.++...+. .+.+..+++.+...+|. +++.+|.+|...| ++++|+..|+++
T Consensus 136 -------~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~---a~~~Lg~~~~~~g~~~~~~~A~~~~~~a 205 (452)
T 3e4b_A 136 -------QAAGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDI---CYVELATVYQKKQQPEQQAELLKQMEAG 205 (452)
T ss_dssp -------HHHTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTT---HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -------HHCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHH---HHHHHHHHHHHcCCcccHHHHHHHHHHH
Confidence 111234567778888887774 44444555555544444 8888888888888 888888888888
Q ss_pred HHccccchhhHHHHHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCChh-------H-H--HhhhhHHHHHHHHHH
Q 009278 311 VERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPD-------T-L--KKLNEAEKAKKELEQ 380 (538)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~-------~-~--~~~~~~~~a~~~~~~ 380 (538)
....|.. +..++.+|.++.......+++++|+.+|+++. ...+. + + ...+++++|+..|++
T Consensus 206 a~~g~~~-------a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa--~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~ 276 (452)
T 3e4b_A 206 VSRGTVT-------AQRVDSVARVLGDATLGTPDEKTAQALLEKIA--PGYPASWVSLAQLLYDFPELGDVEQMMKYLDN 276 (452)
T ss_dssp HHTTCSC-------HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG--GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHH
T ss_pred HHCCCHH-------HHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc--CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 8888776 55556777777554333345888888888887 22222 2 2 345677888888888
Q ss_pred HHHcCCCchHHHHHHHHHHHhcC-----ChHHHHHHHHHHHhcCCCCchhHhHHHHHHHH----hCCchhHHHHHHHHHh
Q 009278 381 QEIFDPKIADEEREKGNEFFKQQ-----KYPEAIQHYTESLRRNPKDPRTYSNRAACYTK----LGAMPEGLKDADKCIE 451 (538)
Q Consensus 381 ~~~~~~~~~~~~~~la~~~~~~~-----~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~ 451 (538)
+... .++.+++.+|.+|. .| ++++|+.+|+++. +.++.+++++|.+|.. ..++++|+.+|+++.+
T Consensus 277 Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 350 (452)
T 3e4b_A 277 GRAA--DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR 350 (452)
T ss_dssp HHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT
T ss_pred HHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh
Confidence 8754 58999999999998 55 9999999999998 8899999999999887 4489999999999987
Q ss_pred cCCCchHHHHHHHHHHHH----ccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHh
Q 009278 452 LDPTFSKGYTRKGAIQFF----LKEYDKALETYQEGLKHDPQNQELLDGVRRCVQQI 504 (538)
Q Consensus 452 ~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 504 (538)
+.++.+.+++|.+|.. ..++.+|..+|+++.+.. ++.+...+..+...+
T Consensus 351 --~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g--~~~a~~~l~~l~~~~ 403 (452)
T 3e4b_A 351 --NGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD--TPEANDLATQLEAPL 403 (452)
T ss_dssp --TTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC--CHHHHHHHHHHHTTC
T ss_pred --hChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHhC
Confidence 4678899999999985 568999999999998865 456666666664443
No 44
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.94 E-value=1.2e-25 Score=208.94 Aligned_cols=291 Identities=16% Similarity=0.164 Sum_probs=240.4
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCc----hHHHHHHHHHHhhccCHHHHHHHHHhhhhcCCCcHHHHhhH
Q 009278 35 NHVLYSNRSAAHASLHNYADALADAKKTVELKPDW----SKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNEALKSGL 110 (538)
Q Consensus 35 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 110 (538)
+...++..|.++...|++++|+..|++++...|++ ..++..+|.++...|++++|+..+++++.+.+..
T Consensus 4 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~------- 76 (338)
T 3ro2_A 4 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI------- 76 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc-------
Confidence 34677889999999999999999999999999998 4688899999999999999999999988752110
Q ss_pred HHHHHHHhhcccCCCCCCCCcccccccCCchhhcccCCCCCCCcccHHHHHHHHHhhhcCCCchhhhhchHHHHHHHHHH
Q 009278 111 ADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRNMMKDIQRNPNNLNLYLKDQRVMQALGVL 190 (538)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 190 (538)
T Consensus 77 -------------------------------------------------------------------------------- 76 (338)
T 3ro2_A 77 -------------------------------------------------------------------------------- 76 (338)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhhcCCCCCCCccccccccCCCCCCCccccccCCCCCCCCCCccccHHHHHHHHhHHHHHHHHHHHHHHHhcccHHHHH
Q 009278 191 LNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKEAKERKEKALKEKEAGNAAYKKKEFEKAI 270 (538)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 270 (538)
...+..+.++..+|.++...|++++|+
T Consensus 77 -----------------------------------------------------~~~~~~~~~~~~l~~~~~~~g~~~~A~ 103 (338)
T 3ro2_A 77 -----------------------------------------------------GDQLGEAKASGNLGNTLKVLGNFDEAI 103 (338)
T ss_dssp -----------------------------------------------------TCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred -----------------------------------------------------cccHHHHHHHHHHHHHHHHccCHHHHH
Confidence 001245667888999999999999999
Q ss_pred HHHHHHHhhCCCC------HHHHHHHHHHHHHhCC--------------------HHHHHHHHHHHHHccccchhhHHHH
Q 009278 271 EHYSSALELDDED------ISYLTNRAAVYLEMGK--------------------YEECIKDCDKAVERGRELRSDFKMI 324 (538)
Q Consensus 271 ~~~~~al~~~p~~------~~~~~~la~~~~~~~~--------------------~~~A~~~~~~~~~~~~~~~~~~~~~ 324 (538)
.+++++++..|.. ..++..+|.++...|+ +++|+..+++++...+... .....
T Consensus 104 ~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~-~~~~~ 182 (338)
T 3ro2_A 104 VCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALG-DRAAQ 182 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHT-CHHHH
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcC-CHHHH
Confidence 9999999886543 3488999999999999 9999999999988754432 22334
Q ss_pred HHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcCC
Q 009278 325 ARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQK 404 (538)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 404 (538)
+.++..+|.++...++ +++|+..+++++...+... ..+....++..+|.++...|+
T Consensus 183 ~~~~~~l~~~~~~~~~----~~~A~~~~~~a~~~~~~~~--------------------~~~~~~~~~~~l~~~~~~~g~ 238 (338)
T 3ro2_A 183 GRAFGNLGNTHYLLGN----FRDAVIAHEQRLLIAKEFG--------------------DKAAERRAYSNLGNAYIFLGE 238 (338)
T ss_dssp HHHHHHHHHHHHHHTC----HHHHHHHHHHHHHHHHHHT--------------------CHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhCC----HHHHHHHHHHHHHHHHhcC--------------------ChHHHHHHHHHHHHHHHHcCC
Confidence 7789999999999999 9999999999987322100 112234588999999999999
Q ss_pred hHHHHHHHHHHHhcCCCC------chhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCc------hHHHHHHHHHHHHccC
Q 009278 405 YPEAIQHYTESLRRNPKD------PRTYSNRAACYTKLGAMPEGLKDADKCIELDPTF------SKGYTRKGAIQFFLKE 472 (538)
Q Consensus 405 ~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~ 472 (538)
+++|+.++++++...+.. ..++..+|.++...|++++|+.++++++...|.. ..++..+|.++...|+
T Consensus 239 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 318 (338)
T 3ro2_A 239 FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGN 318 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC
Confidence 999999999999886654 5688999999999999999999999999885543 4588999999999999
Q ss_pred HHHHHHHHHHHhccCCCC
Q 009278 473 YDKALETYQEGLKHDPQN 490 (538)
Q Consensus 473 ~~~A~~~~~~al~~~p~~ 490 (538)
+++|..+|++++++.+..
T Consensus 319 ~~~A~~~~~~a~~~~~~~ 336 (338)
T 3ro2_A 319 HDQAMHFAEKHLEISREV 336 (338)
T ss_dssp HHHHHHHHHHHHHC----
T ss_pred hHHHHHHHHHHHHHHHhh
Confidence 999999999999988754
No 45
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.94 E-value=9.3e-26 Score=203.18 Aligned_cols=254 Identities=12% Similarity=0.094 Sum_probs=168.0
Q ss_pred HHHHhhcCCHHHHHHHHHHHhcc----CCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHHHHHhhcc
Q 009278 9 GNAAFSSGDYEAAVRHFTEAISL----SPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQ 84 (538)
Q Consensus 9 g~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 84 (538)
+......|++++|+..|++++.. +|.++.+++.+|.++...|++++|+..|++++..+|+++.++..+|.++...|
T Consensus 12 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~ 91 (275)
T 1xnf_A 12 AVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAG 91 (275)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTT
T ss_pred eeccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcc
Confidence 34455678888888888888887 34567888888888888888888888888888888888888888888888888
Q ss_pred CHHHHHHHHHhhhhcCCCcHHHHhhHHHHHHHHhhcccCCCCCCCCcccccccCCchhhcccCCCCCCCcccHHHHHHHH
Q 009278 85 DYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRNMM 164 (538)
Q Consensus 85 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (538)
++++|+..|+++++.+|++..+
T Consensus 92 ~~~~A~~~~~~al~~~~~~~~~---------------------------------------------------------- 113 (275)
T 1xnf_A 92 NFDAAYEAFDSVLELDPTYNYA---------------------------------------------------------- 113 (275)
T ss_dssp CHHHHHHHHHHHHHHCTTCTHH----------------------------------------------------------
T ss_pred CHHHHHHHHHHHHhcCccccHH----------------------------------------------------------
Confidence 8888888888888887776543
Q ss_pred HhhhcCCCchhhhhchHHHHHHHHHHHhhhcCCCCCCCccccccccCCCCCCCccccccCCCCCCCCCCccccHHHHHHH
Q 009278 165 KDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKEAK 244 (538)
Q Consensus 165 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (538)
T Consensus 114 -------------------------------------------------------------------------------- 113 (275)
T 1xnf_A 114 -------------------------------------------------------------------------------- 113 (275)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHH
Q 009278 245 ERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMI 324 (538)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 324 (538)
+..+|.++...|++++|+.+|+++++.+|++.......+.+ ...|++++|+..+.+++...|.+...+
T Consensus 114 --------~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~--- 181 (275)
T 1xnf_A 114 --------HLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQKLDEKQAKEVLKQHFEKSDKEQWGW--- 181 (275)
T ss_dssp --------HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHCHHHHHHHHHHHHHHSCCCSTHH---
T ss_pred --------HHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHhcCHHHHHHHHHHHHhcCCcchHHH---
Confidence 33446667777888888888888888888887665555544 556778888888877777776653221
Q ss_pred HHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcCC
Q 009278 325 ARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQK 404 (538)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 404 (538)
..+..+...+. .++|+..+.+++...+. ..|.++.++..+|.++...|+
T Consensus 182 -----~~~~~~~~~~~----~~~a~~~~~~~~~~~~~----------------------~~~~~~~~~~~la~~~~~~g~ 230 (275)
T 1xnf_A 182 -----NIVEFYLGNIS----EQTLMERLKADATDNTS----------------------LAEHLSETNFYLGKYYLSLGD 230 (275)
T ss_dssp -----HHHHHHTTSSC----HHHHHHHHHHHCCSHHH----------------------HHHHHHHHHHHHHHHHHHTTC
T ss_pred -----HHHHHHHHhcC----HHHHHHHHHHHhccccc----------------------ccccccHHHHHHHHHHHHcCC
Confidence 12222233333 55566666655542111 112234555556666666666
Q ss_pred hHHHHHHHHHHHhcCCCCchhHhHHHHHHHHhCCchhHHHHH
Q 009278 405 YPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDA 446 (538)
Q Consensus 405 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 446 (538)
+++|+..|++++..+|.+.. ..+.++..+|++++|+..+
T Consensus 231 ~~~A~~~~~~al~~~p~~~~---~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 231 LDSATALFKLAVANNVHNFV---EHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHHTTCCTTCH---HHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHhCCchhHH---HHHHHHHHHHHHHhhHHHH
Confidence 66666666666665554432 2244555555555555554
No 46
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.93 E-value=1.2e-24 Score=182.76 Aligned_cols=172 Identities=16% Similarity=0.257 Sum_probs=112.0
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCCh
Q 009278 283 DISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNP 362 (538)
Q Consensus 283 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~ 362 (538)
++.+++.+|.+|...|++++|+..|+++++.+|++ ..++..+|.++...++ +++|+..+.+++.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~~~----~~~a~~~~~~~~~----- 67 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNN-------VETLLKLGKTYMDIGL----PNDAIESLKKFVV----- 67 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTC----HHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHCCC----HHHHHHHHHHHHh-----
Confidence 34455555555555555555555555555555554 3344444444444444 5555555555555
Q ss_pred hHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHhHHHHHHHHhCCchhH
Q 009278 363 DTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEG 442 (538)
Q Consensus 363 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A 442 (538)
..|..+.++..+|.++...++++.|+..+.+++...|.++.++..+|.++..+|++++|
T Consensus 68 ---------------------~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A 126 (184)
T 3vtx_A 68 ---------------------LDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKA 126 (184)
T ss_dssp ---------------------HCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred ---------------------cCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhH
Confidence 55556666666677777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHHccCHHHHHHHHHHHhccCCCCH
Q 009278 443 LKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQ 491 (538)
Q Consensus 443 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 491 (538)
+..|+++++.+|+++.+++.+|.++..+|++++|+.+|+++++++|+++
T Consensus 127 ~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 127 IEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccCH
Confidence 7777777777777777777777777777777777777777777777654
No 47
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.93 E-value=1.2e-23 Score=183.09 Aligned_cols=217 Identities=16% Similarity=0.080 Sum_probs=202.1
Q ss_pred hHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHH
Q 009278 246 RKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIA 325 (538)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 325 (538)
.|..+..+..+|.++...|++++|+.+|+++++.+|.++.++..+|.++...|++++|+..+++++...|++ .
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-------~ 76 (225)
T 2vq2_A 4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDS-------A 76 (225)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------H
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-------h
Confidence 457889999999999999999999999999999999999999999999999999999999999999999987 5
Q ss_pred HHHHHhHHHHHHh-hhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcCC
Q 009278 326 RALTRKGTALVKM-AKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQK 404 (538)
Q Consensus 326 ~~~~~~~~~~~~~-~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 404 (538)
.++..+|.++... ++ +++|+..+++++. .+ ..|....++..+|.++...|+
T Consensus 77 ~~~~~l~~~~~~~~~~----~~~A~~~~~~~~~-~~-----------------------~~~~~~~~~~~l~~~~~~~~~ 128 (225)
T 2vq2_A 77 EINNNYGWFLCGRLNR----PAESMAYFDKALA-DP-----------------------TYPTPYIANLNKGICSAKQGQ 128 (225)
T ss_dssp HHHHHHHHHHHTTTCC----HHHHHHHHHHHHT-ST-----------------------TCSCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCc----HHHHHHHHHHHHc-Cc-----------------------CCcchHHHHHHHHHHHHHcCC
Confidence 6677788888888 88 9999999999987 22 357778999999999999999
Q ss_pred hHHHHHHHHHHHhcCCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhcCC-CchHHHHHHHHHHHHccCHHHHHHHHHHH
Q 009278 405 YPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDP-TFSKGYTRKGAIQFFLKEYDKALETYQEG 483 (538)
Q Consensus 405 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 483 (538)
+++|+..|+++++..|.++.++..+|.++...|++++|+.+++++++..| .++.++..++.++...|+.+.|..+++.+
T Consensus 129 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 208 (225)
T 2vq2_A 129 FGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQL 208 (225)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred hccCCCCHHHHHHH
Q 009278 484 LKHDPQNQELLDGV 497 (538)
Q Consensus 484 l~~~p~~~~~~~~l 497 (538)
.+.+|+++.+...+
T Consensus 209 ~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 209 QANFPYSEELQTVL 222 (225)
T ss_dssp HHHCTTCHHHHHHH
T ss_pred HHhCCCCHHHHHHh
Confidence 99999999887655
No 48
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.93 E-value=1.6e-24 Score=195.05 Aligned_cols=223 Identities=13% Similarity=0.054 Sum_probs=140.4
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHHHHH
Q 009278 249 KALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARAL 328 (538)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (538)
.+.++..+|.++...|++++|+.+|+++++.+|.++.++..+|.++...|++++|+.++++++...|++ ..++
T Consensus 42 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-------~~~~ 114 (275)
T 1xnf_A 42 RAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY-------NYAH 114 (275)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------THHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccc-------cHHH
Confidence 444555566666666666666666666666666666666666666666666666666666666666655 3445
Q ss_pred HHhHHHHHHhhhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcCChHHH
Q 009278 329 TRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEA 408 (538)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 408 (538)
..+|.++...++ +++|+..|++++. ..|++.......+.. ...|++++|
T Consensus 115 ~~la~~~~~~g~----~~~A~~~~~~a~~--------------------------~~~~~~~~~~~~~~~-~~~~~~~~A 163 (275)
T 1xnf_A 115 LNRGIALYYGGR----DKLAQDDLLAFYQ--------------------------DDPNDPFRSLWLYLA-EQKLDEKQA 163 (275)
T ss_dssp HHHHHHHHHTTC----HHHHHHHHHHHHH--------------------------HCTTCHHHHHHHHHH-HHHHCHHHH
T ss_pred HHHHHHHHHhcc----HHHHHHHHHHHHH--------------------------hCCCChHHHHHHHHH-HHhcCHHHH
Confidence 555555555555 6666666666666 445554444433332 445677777
Q ss_pred HHHHHHHHhcCCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCC----chHHHHHHHHHHHHccCHHHHHHHHHHHh
Q 009278 409 IQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPT----FSKGYTRKGAIQFFLKEYDKALETYQEGL 484 (538)
Q Consensus 409 ~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~al 484 (538)
+..+.+++...|.+...+. ++.++...++.++|+..+.+++...|. ++.++..+|.++...|++++|+.+|++++
T Consensus 164 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 242 (275)
T 1xnf_A 164 KEVLKQHFEKSDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAV 242 (275)
T ss_dssp HHHHHHHHHHSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7777777776666554443 555666666677777777777666553 25677777777777777777777777777
Q ss_pred ccCCCCHHHHHHHHHHHHHhhhhccCCCC
Q 009278 485 KHDPQNQELLDGVRRCVQQINKAGRGELS 513 (538)
Q Consensus 485 ~~~p~~~~~~~~l~~~~~~~~~~~~a~~~ 513 (538)
.++|++...+ +.++..+|++.+|..+
T Consensus 243 ~~~p~~~~~~---~~~~~~l~~~~~a~~~ 268 (275)
T 1xnf_A 243 ANNVHNFVEH---RYALLELSLLGQDQDD 268 (275)
T ss_dssp TTCCTTCHHH---HHHHHHHHHHHHC---
T ss_pred hCCchhHHHH---HHHHHHHHHHHhhHHH
Confidence 7777664433 5566677777777644
No 49
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.93 E-value=1.1e-23 Score=187.01 Aligned_cols=217 Identities=17% Similarity=0.090 Sum_probs=201.6
Q ss_pred hHHH-HHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHH
Q 009278 246 RKEK-ALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMI 324 (538)
Q Consensus 246 ~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 324 (538)
+|.. +..+..+|.++...|++++|+.+|+++++.+|.+..++..+|.++...|++++|+..++++++..|.+
T Consensus 32 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~------- 104 (252)
T 2ho1_A 32 GRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRN------- 104 (252)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------
T ss_pred chHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc-------
Confidence 3444 89999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred HHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcCC
Q 009278 325 ARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQK 404 (538)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 404 (538)
..++..+|.++...++ +++|+..+++++. .+ ..|..+.++..+|.++...|+
T Consensus 105 ~~~~~~la~~~~~~g~----~~~A~~~~~~~~~-~~-----------------------~~~~~~~~~~~la~~~~~~g~ 156 (252)
T 2ho1_A 105 ARVLNNYGGFLYEQKR----YEEAYQRLLEASQ-DT-----------------------LYPERSRVFENLGLVSLQMKK 156 (252)
T ss_dssp HHHHHHHHHHHHHTTC----HHHHHHHHHHHTT-CT-----------------------TCTTHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhH----HHHHHHHHHHHHh-Cc-----------------------cCcccHHHHHHHHHHHHHcCC
Confidence 5667777888888888 9999999999887 11 467788999999999999999
Q ss_pred hHHHHHHHHHHHhcCCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCchHHHHHHHHHHHHccCHHHHHHHHHHHh
Q 009278 405 YPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGL 484 (538)
Q Consensus 405 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 484 (538)
+++|+.+|+++++..|.++.++..+|.++...|++++|+.+++++++..|.++.++..++.++...|++++|..++++++
T Consensus 157 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~ 236 (252)
T 2ho1_A 157 PAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLK 236 (252)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCHHHHHHH
Q 009278 485 KHDPQNQELLDGV 497 (538)
Q Consensus 485 ~~~p~~~~~~~~l 497 (538)
+..|+++.+...+
T Consensus 237 ~~~p~~~~~~~~l 249 (252)
T 2ho1_A 237 RLYPGSLEYQEFQ 249 (252)
T ss_dssp HHCTTSHHHHHHH
T ss_pred HHCCCCHHHHHHH
Confidence 9999999876544
No 50
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.93 E-value=1.1e-24 Score=183.00 Aligned_cols=174 Identities=22% Similarity=0.304 Sum_probs=163.6
Q ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHHHH
Q 009278 248 EKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARA 327 (538)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 327 (538)
+.+.+|+.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+.+++...|++ ..+
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~-------~~~ 75 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTS-------AEA 75 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC-------HHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchh-------HHH
Confidence 4578899999999999999999999999999999999999999999999999999999999999999998 566
Q ss_pred HHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcCChHH
Q 009278 328 LTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPE 407 (538)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 407 (538)
+...|.++...++ ++.|+..+.+++. .+|.++.++..+|.++...|++++
T Consensus 76 ~~~~~~~~~~~~~----~~~a~~~~~~a~~--------------------------~~~~~~~~~~~lg~~~~~~g~~~~ 125 (184)
T 3vtx_A 76 YYILGSANFMIDE----KQAAIDALQRAIA--------------------------LNTVYADAYYKLGLVYDSMGEHDK 125 (184)
T ss_dssp HHHHHHHHHHTTC----HHHHHHHHHHHHH--------------------------HCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHcCC----HHHHHHHHHHHHH--------------------------hCccchHHHHHHHHHHHHhCCchh
Confidence 7777777777777 9999999999988 889999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCchH
Q 009278 408 AIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSK 458 (538)
Q Consensus 408 A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~ 458 (538)
|+..|+++++.+|.++.+++.+|.+|..+|++++|+.+|+++++++|+++.
T Consensus 126 A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~a~ 176 (184)
T 3vtx_A 126 AIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKAK 176 (184)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccCHH
Confidence 999999999999999999999999999999999999999999999998654
No 51
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.93 E-value=2e-24 Score=190.48 Aligned_cols=219 Identities=21% Similarity=0.217 Sum_probs=179.1
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHHHhccCCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHHHHHh
Q 009278 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHL 81 (538)
Q Consensus 2 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 81 (538)
+..++.+|..++..|++++|+..|++++..+|.++.++..+|.++...|++++|+..|++++..+|++..++..+|.++.
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 102 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYV 102 (243)
T ss_dssp -------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCHHHHHHHHHhhhhcCCCcHHHHhhHHHHHHHHhhcccCCCCCCCCcccccccCCchhhcccCCCCCCCcccHHHHH
Q 009278 82 GLQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFR 161 (538)
Q Consensus 82 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (538)
..|++++|+..|+++++..|.+..+
T Consensus 103 ~~~~~~~A~~~~~~~~~~~~~~~~~------------------------------------------------------- 127 (243)
T 2q7f_A 103 VKEMYKEAKDMFEKALRAGMENGDL------------------------------------------------------- 127 (243)
T ss_dssp HTTCHHHHHHHHHHHHHHTCCSHHH-------------------------------------------------------
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHH-------------------------------------------------------
Confidence 9999999999999999998886554
Q ss_pred HHHHhhhcCCCchhhhhchHHHHHHHHHHHhhhcCCCCCCCccccccccCCCCCCCccccccCCCCCCCCCCccccHHHH
Q 009278 162 NMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEK 241 (538)
Q Consensus 162 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (538)
T Consensus 128 -------------------------------------------------------------------------------- 127 (243)
T 2q7f_A 128 -------------------------------------------------------------------------------- 127 (243)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhH
Q 009278 242 EAKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDF 321 (538)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 321 (538)
+..+|.++...|++++|+.+++++++..|.++.++..+|.++...|++++|+..+++++...|++
T Consensus 128 -----------~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---- 192 (243)
T 2q7f_A 128 -----------FYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGH---- 192 (243)
T ss_dssp -----------HHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTC----
T ss_pred -----------HHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc----
Confidence 33457778888999999999999999999999999999999999999999999999999999987
Q ss_pred HHHHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHh
Q 009278 322 KMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFK 401 (538)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~ 401 (538)
..++..+|.++...++ +++|+..+++++. .+|+++.++..++.+...
T Consensus 193 ---~~~~~~la~~~~~~~~----~~~A~~~~~~~~~--------------------------~~p~~~~~~~~~~~l~~~ 239 (243)
T 2q7f_A 193 ---ADAFYNAGVTYAYKEN----REKALEMLDKAID--------------------------IQPDHMLALHAKKLLGHH 239 (243)
T ss_dssp ---HHHHHHHHHHHHHTTC----TTHHHHHHHHHHH--------------------------HCTTCHHHHHHHTC----
T ss_pred ---HHHHHHHHHHHHHccC----HHHHHHHHHHHHc--------------------------cCcchHHHHHHHHHHHhh
Confidence 5677788888888888 9999999999999 788888888887776554
Q ss_pred cC
Q 009278 402 QQ 403 (538)
Q Consensus 402 ~~ 403 (538)
.+
T Consensus 240 ~~ 241 (243)
T 2q7f_A 240 HH 241 (243)
T ss_dssp --
T ss_pred cc
Confidence 43
No 52
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.93 E-value=4.2e-23 Score=185.35 Aligned_cols=233 Identities=16% Similarity=0.173 Sum_probs=175.5
Q ss_pred CCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHHHHHhh----ccCHHHHHHHHHhhhhcCCCcHHHH
Q 009278 32 SPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLG----LQDYIEAVNSYKKGLDIDPNNEALK 107 (538)
Q Consensus 32 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~ 107 (538)
+|.++.+++.+|.++...|++++|+.+|+++++ |+++.+++.+|.++.. .+++++|+..|+++++.. ++.+
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a- 76 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNG- 76 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHH-
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHH-
Confidence 467788888888888888888888888888887 7778888888888888 888888888888887653 2222
Q ss_pred hhHHHHHHHHhhcccCCCCCCCCcccccccCCchhhcccCCCCCCCcccHHHHHHHHHhhhcCCCchhhhhchHHHHHHH
Q 009278 108 SGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRNMMKDIQRNPNNLNLYLKDQRVMQAL 187 (538)
Q Consensus 108 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 187 (538)
T Consensus 77 -------------------------------------------------------------------------------- 76 (273)
T 1ouv_A 77 -------------------------------------------------------------------------------- 76 (273)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhhhcCCCCCCCccccccccCCCCCCCccccccCCCCCCCCCCccccHHHHHHHHhHHHHHHHHHHHHHHHh----c
Q 009278 188 GVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKEAKERKEKALKEKEAGNAAYK----K 263 (538)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 263 (538)
+..+|.++.. .
T Consensus 77 -----------------------------------------------------------------~~~lg~~~~~g~~~~ 91 (273)
T 1ouv_A 77 -----------------------------------------------------------------CHLLGNLYYSGQGVS 91 (273)
T ss_dssp -----------------------------------------------------------------HHHHHHHHHHTSSSC
T ss_pred -----------------------------------------------------------------HHHHHHHHhCCCCcc
Confidence 3445666666 7
Q ss_pred ccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHccccchhhHHHHHHHHHHhHHHHHH--
Q 009278 264 KEFEKAIEHYSSALELDDEDISYLTNRAAVYLE----MGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVK-- 337 (538)
Q Consensus 264 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 337 (538)
+++++|+.+|+++++.+ ++.++..+|.+|.. .+++++|+.+|+++++..+ ..++..+|.++..
T Consensus 92 ~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~---------~~a~~~lg~~~~~~~ 160 (273)
T 1ouv_A 92 QNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLND---------GDGCTILGSLYDAGR 160 (273)
T ss_dssp CCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHHTS
T ss_pred cCHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCc---------HHHHHHHHHHHHcCC
Confidence 88888888888888773 78888888888888 8888888888888887652 4566667776666
Q ss_pred --hhhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHh----cCChHHHHHH
Q 009278 338 --MAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFK----QQKYPEAIQH 411 (538)
Q Consensus 338 --~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~ 411 (538)
.++ +++|+.+|+++++ . .++.++..+|.++.. .+++++|+.+
T Consensus 161 ~~~~~----~~~A~~~~~~a~~--------------------------~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~ 208 (273)
T 1ouv_A 161 GTPKD----LKKALASYDKACD--------------------------L--KDSPGCFNAGNMYHHGEGATKNFKEALAR 208 (273)
T ss_dssp SSCCC----HHHHHHHHHHHHH--------------------------T--TCHHHHHHHHHHHHHTCSSCCCHHHHHHH
T ss_pred CCCCC----HHHHHHHHHHHHH--------------------------C--CCHHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence 455 7777777777766 2 345677777777777 7778888888
Q ss_pred HHHHHhcCCCCchhHhHHHHHHHH----hCCchhHHHHHHHHHhcCCCchHH
Q 009278 412 YTESLRRNPKDPRTYSNRAACYTK----LGAMPEGLKDADKCIELDPTFSKG 459 (538)
Q Consensus 412 ~~~al~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~ 459 (538)
|+++++..| +.+++.+|.+|.. .+++++|+.+|+++++..|.++..
T Consensus 209 ~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~ 258 (273)
T 1ouv_A 209 YSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGACD 258 (273)
T ss_dssp HHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHHHH
Confidence 877777654 6677777777777 777777777777777777654433
No 53
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.93 E-value=1e-24 Score=209.57 Aligned_cols=348 Identities=9% Similarity=0.011 Sum_probs=240.1
Q ss_pred hHHHHHHHHHhhcCCH---HHHHHHHHHHhccCCcchHHHHHHHHHHHhcC-----CHHHHHHHHHHHhccCCCchHHHH
Q 009278 3 DEAKAKGNAAFSSGDY---EAAVRHFTEAISLSPDNHVLYSNRSAAHASLH-----NYADALADAKKTVELKPDWSKGYS 74 (538)
Q Consensus 3 ~~~~~~g~~~~~~g~~---~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~p~~~~~~~ 74 (538)
++++.+|.+++..|++ ++|+.+|+++++. ++.+++.+|.++...+ ++++|+..|++++. ++++.+++
T Consensus 36 ~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~ 110 (452)
T 3e4b_A 36 EAQVGLADIQVGTRDPAQIKQAEATYRAAADT---SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFA--NGEGNTLI 110 (452)
T ss_dssp TGGGTCC-------------------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHH--TTCSSCHH
T ss_pred HHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHH--CCCHHHHH
Confidence 4567788999999999 9999999999976 7889999999777766 89999999999988 45566999
Q ss_pred HHHHHHhhccCHHHH---HHHHHhhhhcCCCcHHHHhhHHHHHHHHhhcccCCCCCCCCcccccccCCchhhcccCCCCC
Q 009278 75 RLGAAHLGLQDYIEA---VNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTT 151 (538)
Q Consensus 75 ~la~~~~~~~~~~~A---~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (538)
.+|.+|...+..+++ ...+.++.. +.++.+...++.++...+...+
T Consensus 111 ~Lg~~y~~~~~~~~~~~a~~~~~~a~~--~g~~~a~~~Lg~~y~~~~~~~~----------------------------- 159 (452)
T 3e4b_A 111 PLAMLYLQYPHSFPNVNAQQQISQWQA--AGYPEAGLAQVLLYRTQGTYDQ----------------------------- 159 (452)
T ss_dssp HHHHHHHHCGGGCTTCCHHHHHHHHHH--HTCTTHHHHHHHHHHHHTCGGG-----------------------------
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCccc-----------------------------
Confidence 999999988765554 444444433 4567788888888887754311
Q ss_pred CCcccHHHHHHHHHhhhcCCCchhhhhchHHHHHHHHHHHhhhcCCCCCCCccccccccCCCCCCCccccccCCCCCCCC
Q 009278 152 RSYLDQDDFRNMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEP 231 (538)
Q Consensus 152 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (538)
....+..... .
T Consensus 160 -------~~~~a~~~~~------------------------~-------------------------------------- 170 (452)
T 3e4b_A 160 -------HLDDVERICK------------------------A-------------------------------------- 170 (452)
T ss_dssp -------GHHHHHHHHH------------------------H--------------------------------------
T ss_pred -------CHHHHHHHHH------------------------H--------------------------------------
Confidence 1111000000 0
Q ss_pred CCccccHHHHHHHHhHHHHHHHHHHHHHHHhcc---cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh----CCHHHHH
Q 009278 232 EPMELTEEEKEAKERKEKALKEKEAGNAAYKKK---EFEKAIEHYSSALELDDEDISYLTNRAAVYLEM----GKYEECI 304 (538)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----~~~~~A~ 304 (538)
.....+.+++.+|.++...| ++++|+.+|+++.+..|.....++.+|.+|... +++++|+
T Consensus 171 -------------a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~ 237 (452)
T 3e4b_A 171 -------------ALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQ 237 (452)
T ss_dssp -------------HTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHH
T ss_pred -------------HHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHH
Confidence 00012336788999999999 999999999999999999999999999999766 7999999
Q ss_pred HHHHHHHHccccchhhHHHHHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCChhH------HHhhh-----hHHH
Q 009278 305 KDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDT------LKKLN-----EAEK 373 (538)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------~~~~~-----~~~~ 373 (538)
.+|+++. |.+ +.+++.+|.++..... .+++++|+.+|+++..... +.. +...| ++++
T Consensus 238 ~~~~~aa---~g~-------~~a~~~Lg~~~~~~~~-~~d~~~A~~~~~~Aa~~g~-~~A~~~Lg~~y~~G~g~~~d~~~ 305 (452)
T 3e4b_A 238 ALLEKIA---PGY-------PASWVSLAQLLYDFPE-LGDVEQMMKYLDNGRAADQ-PRAELLLGKLYYEGKWVPADAKA 305 (452)
T ss_dssp HHHHHHG---GGS-------THHHHHHHHHHHHSGG-GCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHCSSSCCCHHH
T ss_pred HHHHHHc---CCC-------HHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHcCCCCCCCHHH
Confidence 9999998 776 4566667766331111 3459999999999997653 222 22244 8999
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCchhHhHHHHHHHH----hCCchhHHHH
Q 009278 374 AKKELEQQEIFDPKIADEEREKGNEFFK----QQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTK----LGAMPEGLKD 445 (538)
Q Consensus 374 a~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~~~~~~A~~~ 445 (538)
|+.+|+++. +.++.+++.+|.+|.. ..++++|+.+|+++.+ +.++.+.+++|.+|.. .+++.+|..+
T Consensus 306 A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~ 380 (452)
T 3e4b_A 306 AEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR--NGQNSADFAIAQLFSQGKGTKPDPLNAYVF 380 (452)
T ss_dssp HHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT--TTCTTHHHHHHHHHHSCTTBCCCHHHHHHH
T ss_pred HHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh--hChHHHHHHHHHHHHhCCCCCCCHHHHHHH
Confidence 999999998 8999999999999987 4599999999999987 4578999999999985 4589999999
Q ss_pred HHHHHhcCCCchHHHHHHHHHHHH--ccCHHHHHHHHHHHhccC
Q 009278 446 ADKCIELDPTFSKGYTRKGAIQFF--LKEYDKALETYQEGLKHD 487 (538)
Q Consensus 446 ~~~al~~~p~~~~~~~~l~~~~~~--~g~~~~A~~~~~~al~~~ 487 (538)
|+++.+..+ +.+...++.+... .++..+|....++.....
T Consensus 381 ~~~A~~~g~--~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~~ 422 (452)
T 3e4b_A 381 SQLAKAQDT--PEANDLATQLEAPLTPAQRAEGQRLVQQELAAR 422 (452)
T ss_dssp HHHHHTTCC--HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCC--HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc
Confidence 999998754 5555666666443 345666666666655433
No 54
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.93 E-value=6.8e-24 Score=205.09 Aligned_cols=212 Identities=16% Similarity=0.150 Sum_probs=200.0
Q ss_pred cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCH-HHHHHHHHHHHHccccchhhHHHHHHHHHHhHHHHHHhhhccc
Q 009278 265 EFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKY-EECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSK 343 (538)
Q Consensus 265 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (538)
.+++++..+.+.....|.+..+++.+|.++...|++ ++|+.+|+++++.+|++ ..++..+|.++...++
T Consensus 83 ~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~-------~~a~~~lg~~~~~~g~--- 152 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPEL-------VEAWNQLGEVYWKKGD--- 152 (474)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCC-------HHHHHHHHHHHHHcCC---
Confidence 477888888888889999999999999999999999 99999999999999998 6778888888888888
Q ss_pred ChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhc---------CChHHHHHHHHH
Q 009278 344 DYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQ---------QKYPEAIQHYTE 414 (538)
Q Consensus 344 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~---------~~~~~A~~~~~~ 414 (538)
+++|+..|++++. .+|+ ..++..+|.++... |++++|+..|++
T Consensus 153 -~~~A~~~~~~al~--------------------------~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~ 204 (474)
T 4abn_A 153 -VTSAHTCFSGALT--------------------------HCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKL 204 (474)
T ss_dssp -HHHHHHHHHHHHT--------------------------TCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHh--------------------------hCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHH
Confidence 9999999999999 7788 68999999999999 999999999999
Q ss_pred HHhcCCCCchhHhHHHHHHHHh--------CCchhHHHHHHHHHhcCC---CchHHHHHHHHHHHHccCHHHHHHHHHHH
Q 009278 415 SLRRNPKDPRTYSNRAACYTKL--------GAMPEGLKDADKCIELDP---TFSKGYTRKGAIQFFLKEYDKALETYQEG 483 (538)
Q Consensus 415 al~~~~~~~~~~~~la~~~~~~--------~~~~~A~~~~~~al~~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 483 (538)
+++++|+++.+|+.+|.+|... |++++|+.+|+++++++| +++.+++++|.++...|++++|+..|+++
T Consensus 205 al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 284 (474)
T 4abn_A 205 AVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQA 284 (474)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999999999999999999 999999999999999999 99999999999999999999999999999
Q ss_pred hccCCCCHHHHHHHHHHHHHhhhhccCCCCh
Q 009278 484 LKHDPQNQELLDGVRRCVQQINKAGRGELSP 514 (538)
Q Consensus 484 l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~ 514 (538)
++++|+++.++..++.++..+|+.++|...+
T Consensus 285 l~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 285 AALDPAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999998886443
No 55
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.92 E-value=2.9e-23 Score=189.55 Aligned_cols=255 Identities=9% Similarity=0.012 Sum_probs=188.9
Q ss_pred HHHHHHHHHHhccCCcchHHHHHHHHHHHh-------cCCH-------HHHHHHHHHHhc-cCCCchHHHHHHHHHHhhc
Q 009278 19 EAAVRHFTEAISLSPDNHVLYSNRSAAHAS-------LHNY-------ADALADAKKTVE-LKPDWSKGYSRLGAAHLGL 83 (538)
Q Consensus 19 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~-------~g~~-------~~A~~~~~~al~-~~p~~~~~~~~la~~~~~~ 83 (538)
++|+..|++++..+|.++.+|+.+|..+.. .|++ ++|+..|++++. ++|++..+|..+|.++...
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 789999999999999999999999998874 5775 899999999999 6999999999999999999
Q ss_pred cCHHHHHHHHHhhhhcCCCcHH-HHhhHHHHHHHHhhcccCCCCCCCCcccccccCCchhhcccCCCCCCCcccHHHHHH
Q 009278 84 QDYIEAVNSYKKGLDIDPNNEA-LKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRN 162 (538)
Q Consensus 84 ~~~~~A~~~~~~al~~~p~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (538)
|++++|...|++++++.|.++. +|
T Consensus 113 ~~~~~A~~~~~~al~~~p~~~~~~~------------------------------------------------------- 137 (308)
T 2ond_A 113 MKYEKVHSIYNRLLAIEDIDPTLVY------------------------------------------------------- 137 (308)
T ss_dssp TCHHHHHHHHHHHHTSSSSCTHHHH-------------------------------------------------------
T ss_pred CCHHHHHHHHHHHHhccccCccHHH-------------------------------------------------------
Confidence 9999999999999998887654 33
Q ss_pred HHHhhhcCCCchhhhhchHHHHHHHHHHHhhhcCCCCCCCccccccccCCCCCCCccccccCCCCCCCCCCccccHHHHH
Q 009278 163 MMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKE 242 (538)
Q Consensus 163 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (538)
T Consensus 138 -------------------------------------------------------------------------------- 137 (308)
T 2ond_A 138 -------------------------------------------------------------------------------- 137 (308)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHccccchhhH
Q 009278 243 AKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLE-MGKYEECIKDCDKAVERGRELRSDF 321 (538)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~ 321 (538)
..+|.++...|++++|+..|+++++..|.+..++...+.+... .|++++|+.+|+++++..|++
T Consensus 138 -----------~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~---- 202 (308)
T 2ond_A 138 -----------IQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDI---- 202 (308)
T ss_dssp -----------HHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTC----
T ss_pred -----------HHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc----
Confidence 3345556667888899999999999888888777766665443 688888888888888888876
Q ss_pred HHHHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCC-CchHHHHHHHHHHH
Q 009278 322 KMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDP-KIADEEREKGNEFF 400 (538)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~la~~~~ 400 (538)
..++..++..+...|+ +++|+..|++++...+ ..| ....+|..++..+.
T Consensus 203 ---~~~~~~~~~~~~~~g~----~~~A~~~~~~al~~~~-----------------------l~p~~~~~l~~~~~~~~~ 252 (308)
T 2ond_A 203 ---PEYVLAYIDYLSHLNE----DNNTRVLFERVLTSGS-----------------------LPPEKSGEIWARFLAFES 252 (308)
T ss_dssp ---HHHHHHHHHHHHTTCC----HHHHHHHHHHHHHSSS-----------------------SCGGGCHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHCCC----HHHHHHHHHHHHhccC-----------------------CCHHHHHHHHHHHHHHHH
Confidence 4555566665555556 7777777777776210 133 25567777777777
Q ss_pred hcCChHHHHHHHHHHHhcCCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCchHHHHHHHH
Q 009278 401 KQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGA 465 (538)
Q Consensus 401 ~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 465 (538)
..|+++.|..+++++++..|+++..... +.+ ..+ .+.+.++|+++..+..+|.
T Consensus 253 ~~g~~~~a~~~~~~a~~~~p~~~~~~~~-~~~---~~r--------~~~l~~~P~~~~~ln~lgY 305 (308)
T 2ond_A 253 NIGDLASILKVEKRRFTAFREEYEGKET-ALL---VDR--------YKFMDLYPCSASELKALGY 305 (308)
T ss_dssp HHSCHHHHHHHHHHHHHHTTTTTSSCHH-HHH---HTT--------TCBTTBCSSCHHHHHTTTC
T ss_pred HcCCHHHHHHHHHHHHHHcccccccchH-HHH---HHH--------HHhcccCCCCHHHHHhcCC
Confidence 7777777777777777777765543311 111 111 1445566777776666553
No 56
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.92 E-value=9.7e-23 Score=182.99 Aligned_cols=194 Identities=20% Similarity=0.248 Sum_probs=172.3
Q ss_pred HHHHHHHHHh----cccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHccccchhhHHHH
Q 009278 253 EKEAGNAAYK----KKEFEKAIEHYSSALELDDEDISYLTNRAAVYLE----MGKYEECIKDCDKAVERGRELRSDFKMI 324 (538)
Q Consensus 253 ~~~~~~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 324 (538)
+..+|.++.. .+++++|+.+|+++++.+ ++.+++.+|.+|.. .+++++|+..|+++++.. +
T Consensus 41 ~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~------- 109 (273)
T 1ouv_A 41 CFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--Y------- 109 (273)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--C-------
T ss_pred HHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--C-------
Confidence 3445667777 899999999999999885 78999999999999 999999999999999874 3
Q ss_pred HHHHHHhHHHHHH----hhhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHH
Q 009278 325 ARALTRKGTALVK----MAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFF 400 (538)
Q Consensus 325 ~~~~~~~~~~~~~----~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~ 400 (538)
..++..+|.++.. .++ +++|+.+|++++. .. ++.++..+|.++.
T Consensus 110 ~~a~~~lg~~~~~~~~~~~~----~~~A~~~~~~a~~--------------------------~~--~~~a~~~lg~~~~ 157 (273)
T 1ouv_A 110 AEGCASLGGIYHDGKVVTRD----FKKAVEYFTKACD--------------------------LN--DGDGCTILGSLYD 157 (273)
T ss_dssp HHHHHHHHHHHHHCSSSCCC----HHHHHHHHHHHHH--------------------------TT--CHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHcCCCcccC----HHHHHHHHHHHHh--------------------------cC--cHHHHHHHHHHHH
Confidence 5778888888888 777 9999999999988 33 5778899999999
Q ss_pred h----cCChHHHHHHHHHHHhcCCCCchhHhHHHHHHHH----hCCchhHHHHHHHHHhcCCCchHHHHHHHHHHHH---
Q 009278 401 K----QQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTK----LGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFF--- 469 (538)
Q Consensus 401 ~----~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~--- 469 (538)
. .+++++|+.+|+++++.. ++.+++.+|.+|.. .+++++|+.+|+++++..| +.+++.+|.++..
T Consensus 158 ~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~ 233 (273)
T 1ouv_A 158 AGRGTPKDLKKALASYDKACDLK--DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEG 233 (273)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSS
T ss_pred cCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCC
Confidence 8 999999999999999874 67899999999999 9999999999999999866 8899999999999
Q ss_pred -ccCHHHHHHHHHHHhccCCCCHHH
Q 009278 470 -LKEYDKALETYQEGLKHDPQNQEL 493 (538)
Q Consensus 470 -~g~~~~A~~~~~~al~~~p~~~~~ 493 (538)
.+++++|+.+|+++++..|++...
T Consensus 234 ~~~~~~~A~~~~~~a~~~~~~~a~~ 258 (273)
T 1ouv_A 234 VTRNEKQAIENFKKGCKLGAKGACD 258 (273)
T ss_dssp SSCCSTTHHHHHHHHHHHTCHHHHH
T ss_pred cccCHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999999999875443
No 57
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.92 E-value=1e-23 Score=199.41 Aligned_cols=214 Identities=15% Similarity=0.109 Sum_probs=180.0
Q ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC-------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhh
Q 009278 248 EKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDED-------ISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSD 320 (538)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 320 (538)
..+.++..+|.++...|++++|+.++.++++..+.. ..++..+|.+|...|++++|+.++++++...+... .
T Consensus 141 ~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-~ 219 (383)
T 3ulq_A 141 EKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEK-Q 219 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-C
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcC-C
Confidence 356778889999999999999999999999985433 46899999999999999999999999999887653 2
Q ss_pred HHHHHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcC-CCchHHHHHHHHHH
Q 009278 321 FKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFD-PKIADEEREKGNEF 399 (538)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~la~~~ 399 (538)
....+.++..+|.++...++ +++|+.++++++...+.. .+ |..+.++..+|.++
T Consensus 220 ~~~~~~~~~~lg~~y~~~g~----~~~A~~~~~~al~~~~~~---------------------~~~~~~~~~~~~l~~~~ 274 (383)
T 3ulq_A 220 PQLMGRTLYNIGLCKNSQSQ----YEDAIPYFKRAIAVFEES---------------------NILPSLPQAYFLITQIH 274 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTC----HHHHHHHHHHHHHHHHHT---------------------TCGGGHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHCCC----HHHHHHHHHHHHHHHHhh---------------------ccchhHHHHHHHHHHHH
Confidence 33457899999999999999 999999999999832110 23 67788999999999
Q ss_pred HhcCChHHHHHHHHHHHhcCC-----CCchhHhHHHHHHHHhCC---chhHHHHHHHHHhcCCCchHHHHHHHHHHHHcc
Q 009278 400 FKQQKYPEAIQHYTESLRRNP-----KDPRTYSNRAACYTKLGA---MPEGLKDADKCIELDPTFSKGYTRKGAIQFFLK 471 (538)
Q Consensus 400 ~~~~~~~~A~~~~~~al~~~~-----~~~~~~~~la~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 471 (538)
...|++++|+.++++++.+.+ .....+..+|.++...|+ +++|+.++++. ...|....++..+|.+|...|
T Consensus 275 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g 353 (383)
T 3ulq_A 275 YKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERK 353 (383)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTT
T ss_pred HHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCC
Confidence 999999999999999998743 233346779999999999 88888888876 444556778899999999999
Q ss_pred CHHHHHHHHHHHhccCC
Q 009278 472 EYDKALETYQEGLKHDP 488 (538)
Q Consensus 472 ~~~~A~~~~~~al~~~p 488 (538)
++++|..+|++++++..
T Consensus 354 ~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 354 NFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp CHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 99999999999998654
No 58
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.92 E-value=3.1e-23 Score=189.35 Aligned_cols=194 Identities=12% Similarity=0.043 Sum_probs=147.5
Q ss_pred HHHHHHhcccHHHHHHHHHHHHhhCCCCHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHHHHHHHhHHH
Q 009278 256 AGNAAYKKKEFEKAIEHYSSALELDDEDIS-YLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTA 334 (538)
Q Consensus 256 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (538)
+|.++...|++++|...|+++++..|.++. +|..+|.++.+.|++++|+..|+++++..|.... ++...+..
T Consensus 105 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~-------~~~~~a~~ 177 (308)
T 2ond_A 105 YADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHH-------VYVTAALM 177 (308)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTH-------HHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHH-------HHHHHHHH
Confidence 355566678899999999999999998886 8999999999999999999999999998887632 33333322
Q ss_pred HHH-hhhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcCChHHHHHHHH
Q 009278 335 LVK-MAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYT 413 (538)
Q Consensus 335 ~~~-~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 413 (538)
... .++ +++|+..|++++. .+|+++.+|..+|.++...|++++|+.+|+
T Consensus 178 ~~~~~~~----~~~A~~~~~~al~--------------------------~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~ 227 (308)
T 2ond_A 178 EYYCSKD----KSVAFKIFELGLK--------------------------KYGDIPEYVLAYIDYLSHLNEDNNTRVLFE 227 (308)
T ss_dssp HHHTSCC----HHHHHHHHHHHHH--------------------------HHTTCHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHcCC----HHHHHHHHHHHHH--------------------------hCCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 211 344 7777777777777 778888899999999999999999999999
Q ss_pred HHHhc---CCC-CchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCchHHHHHHHHHHHHccCHHHHHHHHHHHhccCCC
Q 009278 414 ESLRR---NPK-DPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQ 489 (538)
Q Consensus 414 ~al~~---~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 489 (538)
+++.. .|+ ...+|..++..+...|++++|...++++++..|+++.... ++.+ ..-.+.+.++|+
T Consensus 228 ~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~~~~~-~~~~-----------~~r~~~l~~~P~ 295 (308)
T 2ond_A 228 RVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEGKE-TALL-----------VDRYKFMDLYPC 295 (308)
T ss_dssp HHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTSSCH-HHHH-----------HTTTCBTTBCSS
T ss_pred HHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccccccch-HHHH-----------HHHHHhcccCCC
Confidence 99985 443 5678888888888899999999999999999887654321 1222 111267778899
Q ss_pred CHHHHHHHH
Q 009278 490 NQELLDGVR 498 (538)
Q Consensus 490 ~~~~~~~l~ 498 (538)
++..+..||
T Consensus 296 ~~~~ln~lg 304 (308)
T 2ond_A 296 SASELKALG 304 (308)
T ss_dssp CHHHHHTTT
T ss_pred CHHHHHhcC
Confidence 888877665
No 59
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.92 E-value=3.2e-23 Score=180.69 Aligned_cols=182 Identities=17% Similarity=0.256 Sum_probs=168.1
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHHHhccCC-cchHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHHHHH
Q 009278 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSP-DNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAH 80 (538)
Q Consensus 2 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 80 (538)
++.++.+|..++..|+|++|+..|++++..+| .+..+++.+|.++..+|++++|+..|++++..+|+++.++..+|.++
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 86 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAY 86 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHH
Confidence 46899999999999999999999999999999 89999999999999999999999999999999999999999999999
Q ss_pred hhccCHHHHHHHHHhhhhcCCCcHHHHhhHHHHHHHHhhcccCCCCCCCCcccccccCCchhhcccCCCCCCCcccHHHH
Q 009278 81 LGLQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDF 160 (538)
Q Consensus 81 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (538)
..+|++++|+..|+++++++|+++.....++
T Consensus 87 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~------------------------------------------------- 117 (228)
T 4i17_A 87 RDMKNNQEYIATLTEGIKAVPGNATIEKLYA------------------------------------------------- 117 (228)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHH-------------------------------------------------
T ss_pred HHcccHHHHHHHHHHHHHHCCCcHHHHHHHH-------------------------------------------------
Confidence 9999999999999999999999887654433
Q ss_pred HHHHHhhhcCCCchhhhhchHHHHHHHHHHHhhhcCCCCCCCccccccccCCCCCCCccccccCCCCCCCCCCccccHHH
Q 009278 161 RNMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEE 240 (538)
Q Consensus 161 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (538)
T Consensus 118 -------------------------------------------------------------------------------- 117 (228)
T 4i17_A 118 -------------------------------------------------------------------------------- 117 (228)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHhCCH------------------
Q 009278 241 KEAKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDE--DISYLTNRAAVYLEMGKY------------------ 300 (538)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~~~~------------------ 300 (538)
.++..+|.++...|++++|+..|+++++.+|+ ++.++..+|.++...|+.
T Consensus 118 ----------~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 187 (228)
T 4i17_A 118 ----------IYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYAS 187 (228)
T ss_dssp ----------HHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHH
T ss_pred ----------HHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHH
Confidence 34566788999999999999999999999999 999999999999999988
Q ss_pred ---------HHHHHHHHHHHHccccchhhHH
Q 009278 301 ---------EECIKDCDKAVERGRELRSDFK 322 (538)
Q Consensus 301 ---------~~A~~~~~~~~~~~~~~~~~~~ 322 (538)
++|+.+++++++++|++.....
T Consensus 188 ~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~ 218 (228)
T 4i17_A 188 EKAKADAAFKKAVDYLGEAVTLSPNRTEIKQ 218 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCHHHHH
Confidence 9999999999999999855443
No 60
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.92 E-value=2.5e-23 Score=181.39 Aligned_cols=210 Identities=20% Similarity=0.225 Sum_probs=187.6
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHHHH
Q 009278 249 KALKEKEAGNAAYKKKEFEKAIEHYSSALELDD-EDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARA 327 (538)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 327 (538)
++..++.+|.+++..|++++|+..|+++++.+| .+..+++.+|.++...|++++|+..++++++.+|++ ..+
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~ 78 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNL-------ANA 78 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSH-------HHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcch-------HHH
Confidence 458899999999999999999999999999999 899999999999999999999999999999999986 788
Q ss_pred HHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCch-------HHHHHHHHHHH
Q 009278 328 LTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIA-------DEEREKGNEFF 400 (538)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-------~~~~~la~~~~ 400 (538)
+..+|.++...++ +++|+..|++++. .+|+++ .++..+|.++.
T Consensus 79 ~~~l~~~~~~~~~----~~~A~~~~~~al~--------------------------~~p~~~~~~~~~~~~~~~~g~~~~ 128 (228)
T 4i17_A 79 YIGKSAAYRDMKN----NQEYIATLTEGIK--------------------------AVPGNATIEKLYAIYYLKEGQKFQ 128 (228)
T ss_dssp HHHHHHHHHHTTC----HHHHHHHHHHHHH--------------------------HSTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccc----HHHHHHHHHHHHH--------------------------HCCCcHHHHHHHHHHHHHHhHHHH
Confidence 9999999999999 9999999999999 788888 66999999999
Q ss_pred hcCChHHHHHHHHHHHhcCCC--CchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCchHHHHHHHHHHHHccCHHHHHH
Q 009278 401 KQQKYPEAIQHYTESLRRNPK--DPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALE 478 (538)
Q Consensus 401 ~~~~~~~A~~~~~~al~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 478 (538)
..|++++|+..|+++++.+|+ ++.++..+|.+|...| ...++++..+.+..+..+ .+......+.+++|+.
T Consensus 129 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~-----~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~A~~ 201 (228)
T 4i17_A 129 QAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNG-----ADVLRKATPLASSNKEKY--ASEKAKADAAFKKAVD 201 (228)
T ss_dssp HTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHH-----HHHHHHHGGGTTTCHHHH--HHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHH-----HHHHHHHHhcccCCHHHH--HHHHHHHHHHHHHHHH
Confidence 999999999999999999999 8999999999998765 455677777777665444 4555667888999999
Q ss_pred HHHHHhccCCCCHHHHHHHHHHHH
Q 009278 479 TYQEGLKHDPQNQELLDGVRRCVQ 502 (538)
Q Consensus 479 ~~~~al~~~p~~~~~~~~l~~~~~ 502 (538)
+|+++++++|+++.+...++.+..
T Consensus 202 ~~~~a~~l~p~~~~~~~~l~~i~~ 225 (228)
T 4i17_A 202 YLGEAVTLSPNRTEIKQMQDQVKA 225 (228)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred HHHHHhhcCCCCHHHHHHHHHHHH
Confidence 999999999999999988887754
No 61
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.91 E-value=1.8e-23 Score=202.07 Aligned_cols=224 Identities=14% Similarity=0.161 Sum_probs=197.1
Q ss_pred CCHHHHHHHHHHHhccCCcchHHHHHHHHHHHhcCCH-HHHHHHHHHHhccCCCchHHHHHHHHHHhhccCHHHHHHHHH
Q 009278 16 GDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNY-ADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYK 94 (538)
Q Consensus 16 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~ 94 (538)
+.+++|+..+.++....|.++.+++.+|.++...|++ ++|+..|+++++++|+++.+|..+|.+|...|++++|+.+|+
T Consensus 82 ~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 82 EEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3477888899999999999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCcHHHHhhHHHHHHHHhhcccCCCCCCCCcccccccCCchhhcccCCCCCCCcccHHHHHHHHHhhhcCCCch
Q 009278 95 KGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRNMMKDIQRNPNNL 174 (538)
Q Consensus 95 ~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 174 (538)
++++++|+ ..++..++.++.....
T Consensus 162 ~al~~~p~-~~~~~~lg~~~~~~~~------------------------------------------------------- 185 (474)
T 4abn_A 162 GALTHCKN-KVSLQNLSMVLRQLQT------------------------------------------------------- 185 (474)
T ss_dssp HHHTTCCC-HHHHHHHHHHHTTCCC-------------------------------------------------------
T ss_pred HHHhhCCC-HHHHHHHHHHHHHhcc-------------------------------------------------------
Confidence 99999998 4555555443322100
Q ss_pred hhhhchHHHHHHHHHHHhhhcCCCCCCCccccccccCCCCCCCccccccCCCCCCCCCCccccHHHHHHHHhHHHHHHHH
Q 009278 175 NLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKEAKERKEKALKEK 254 (538)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (538)
T Consensus 186 -------------------------------------------------------------------------------- 185 (474)
T 4abn_A 186 -------------------------------------------------------------------------------- 185 (474)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh--------CCHHHHHHHHHHHHHccc---cchhhHHH
Q 009278 255 EAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEM--------GKYEECIKDCDKAVERGR---ELRSDFKM 323 (538)
Q Consensus 255 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--------~~~~~A~~~~~~~~~~~~---~~~~~~~~ 323 (538)
+......|++++|+..|+++++.+|+++.++..+|.++... |++++|+..|+++++++| ++
T Consensus 186 --~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~------ 257 (474)
T 4abn_A 186 --DSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSN------ 257 (474)
T ss_dssp --SCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGC------
T ss_pred --CChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccC------
Confidence 00112238999999999999999999999999999999999 999999999999999999 66
Q ss_pred HHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcC
Q 009278 324 IARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQ 403 (538)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 403 (538)
+.++..+|.++...++ +++|+..|++++. .+|+++.++..++.++...|
T Consensus 258 -~~~~~~lg~~~~~~g~----~~~A~~~~~~al~--------------------------l~p~~~~a~~~l~~~~~~lg 306 (474)
T 4abn_A 258 -PDLHLNRATLHKYEES----YGEALEGFSQAAA--------------------------LDPAWPEPQQREQQLLEFLS 306 (474)
T ss_dssp -HHHHHHHHHHHHHTTC----HHHHHHHHHHHHH--------------------------HCTTCHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHcCC----HHHHHHHHHHHHH--------------------------hCCCCHHHHHHHHHHHHHHH
Confidence 6778888888888888 9999999999999 88999999999999999999
Q ss_pred ChHHHHHHHHH
Q 009278 404 KYPEAIQHYTE 414 (538)
Q Consensus 404 ~~~~A~~~~~~ 414 (538)
++++|+..+.+
T Consensus 307 ~~~eAi~~~~~ 317 (474)
T 4abn_A 307 RLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHTTT
T ss_pred HHHHHHHHhcc
Confidence 99999986654
No 62
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.91 E-value=2.5e-22 Score=178.12 Aligned_cols=200 Identities=15% Similarity=0.088 Sum_probs=179.1
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHHHhccCCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHHHHHh
Q 009278 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHL 81 (538)
Q Consensus 2 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 81 (538)
++.++.+|..++..|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++..+|++..++..+|.++.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 116 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLY 116 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCHHHHHHHHHhhhh--cCCCcHHHHhhHHHHHHHHhhcccCCCCCCCCcccccccCCchhhcccCCCCCCCcccHHH
Q 009278 82 GLQDYIEAVNSYKKGLD--IDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDD 159 (538)
Q Consensus 82 ~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (538)
..|++++|+..|++++. ..|.+.
T Consensus 117 ~~g~~~~A~~~~~~~~~~~~~~~~~------------------------------------------------------- 141 (252)
T 2ho1_A 117 EQKRYEEAYQRLLEASQDTLYPERS------------------------------------------------------- 141 (252)
T ss_dssp HTTCHHHHHHHHHHHTTCTTCTTHH-------------------------------------------------------
T ss_pred HHhHHHHHHHHHHHHHhCccCcccH-------------------------------------------------------
Confidence 99999999999999988 444433
Q ss_pred HHHHHHhhhcCCCchhhhhchHHHHHHHHHHHhhhcCCCCCCCccccccccCCCCCCCccccccCCCCCCCCCCccccHH
Q 009278 160 FRNMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEE 239 (538)
Q Consensus 160 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (538)
T Consensus 142 -------------------------------------------------------------------------------- 141 (252)
T 2ho1_A 142 -------------------------------------------------------------------------------- 141 (252)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchh
Q 009278 240 EKEAKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRS 319 (538)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 319 (538)
..+..+|.++...|++++|+.+|+++++..|.++.++..+|.++...|++++|+..+++++...|.+
T Consensus 142 -----------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-- 208 (252)
T 2ho1_A 142 -----------RVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQN-- 208 (252)
T ss_dssp -----------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCC--
T ss_pred -----------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc--
Confidence 3455668888889999999999999999999999999999999999999999999999999999987
Q ss_pred hHHHHHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhc
Q 009278 320 DFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTE 358 (538)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 358 (538)
...+..++.++...++ +++|...+++++..
T Consensus 209 -----~~~~~~~~~~~~~~g~----~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 209 -----ARSLLLGIRLAKVFED----RDTAASYGLQLKRL 238 (252)
T ss_dssp -----HHHHHHHHHHHHHTTC----HHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHccC----HHHHHHHHHHHHHH
Confidence 4556667777777777 99999999999883
No 63
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.91 E-value=3.9e-22 Score=173.51 Aligned_cols=73 Identities=14% Similarity=0.155 Sum_probs=46.7
Q ss_pred CCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHHHHHhhccCHHHHHHHHHhhhhcCCCcH
Q 009278 32 SPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNE 104 (538)
Q Consensus 32 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 104 (538)
.|.++.+++.+|.++...|++++|+..+++++..+|+++.++..+|.++...|++++|+..|++++..+|++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 76 (225)
T 2vq2_A 4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSA 76 (225)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh
Confidence 4555666666666666666666666666666666666666666666666666666666666666666555543
No 64
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.91 E-value=2.1e-23 Score=197.20 Aligned_cols=251 Identities=13% Similarity=0.103 Sum_probs=212.1
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhh---CC---CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHH
Q 009278 251 LKEKEAGNAAYKKKEFEKAIEHYSSALEL---DD---EDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMI 324 (538)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~---~p---~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 324 (538)
..++..|..+...|++++|+.+|++++.. .| ....++..+|.+|...|++++|+.++++++++.+.........
T Consensus 104 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 183 (383)
T 3ulq_A 104 YFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRL 183 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHH
Confidence 35666899999999999999999999987 22 2468899999999999999999999999999988776545556
Q ss_pred HHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcCC
Q 009278 325 ARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQK 404 (538)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 404 (538)
+.++..+|.++...++ +++|+.+|++++...+... ..+....++.++|.++...|+
T Consensus 184 ~~~~~~lg~~~~~~g~----~~~A~~~~~~al~~~~~~~--------------------~~~~~~~~~~~lg~~y~~~g~ 239 (383)
T 3ulq_A 184 LQCHSLFATNFLDLKQ----YEDAISHFQKAYSMAEAEK--------------------QPQLMGRTLYNIGLCKNSQSQ 239 (383)
T ss_dssp HHHHHHHHHHHHHTTC----HHHHHHHHHHHHHHHHHTT--------------------CHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhcC----HHHHHHHHHHHHHHHHHcC--------------------ChHHHHHHHHHHHHHHHHCCC
Confidence 8899999999999999 9999999999998422110 122334688999999999999
Q ss_pred hHHHHHHHHHHHh-----cC-CCCchhHhHHHHHHHHhCCchhHHHHHHHHHhcC-----CCchHHHHHHHHHHHHccC-
Q 009278 405 YPEAIQHYTESLR-----RN-PKDPRTYSNRAACYTKLGAMPEGLKDADKCIELD-----PTFSKGYTRKGAIQFFLKE- 472 (538)
Q Consensus 405 ~~~A~~~~~~al~-----~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-----p~~~~~~~~l~~~~~~~g~- 472 (538)
+++|+.+|+++++ .+ |..+.++..+|.++..+|++++|+.++++++++. |.....+..+|.++...|+
T Consensus 240 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 319 (383)
T 3ulq_A 240 YEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDE 319 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCH
T ss_pred HHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcH
Confidence 9999999999998 45 6678899999999999999999999999999883 4444456789999999999
Q ss_pred --HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhccCCCChHHHHHHHHhccC
Q 009278 473 --YDKALETYQEGLKHDPQNQELLDGVRRCVQQINKAGRGELSPEELKERQAKGMQ 526 (538)
Q Consensus 473 --~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 526 (538)
+.+|+..+++. ...|....++..++.++...|++++|...++++.+..+....
T Consensus 320 ~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~i~~ 374 (383)
T 3ulq_A 320 EAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQLIQG 374 (383)
T ss_dssp HHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTSCSS
T ss_pred HHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhc
Confidence 88999999887 455666778999999999999999999888877777665544
No 65
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.90 E-value=4.2e-22 Score=177.45 Aligned_cols=206 Identities=13% Similarity=0.136 Sum_probs=176.7
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHHHhccCCcc---hHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCc---hHHHHH
Q 009278 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDN---HVLYSNRSAAHASLHNYADALADAKKTVELKPDW---SKGYSR 75 (538)
Q Consensus 2 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~ 75 (538)
++.++.+|..++..|+|++|+..|++++..+|.+ +.+++.+|.++..+|++++|+..|++++..+|++ +.+++.
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 94 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYE 94 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHH
Confidence 4688999999999999999999999999999998 8999999999999999999999999999998854 678999
Q ss_pred HHHHHhh--------ccCHHHHHHHHHhhhhcCCCcHHHHhhHHHHHHHHhhcccCCCCCCCCcccccccCCchhhcccC
Q 009278 76 LGAAHLG--------LQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTA 147 (538)
Q Consensus 76 la~~~~~--------~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (538)
+|.++.. .|++++|+..|+++++.+|+++.+...+..+....
T Consensus 95 lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~------------------------------ 144 (261)
T 3qky_A 95 RAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELR------------------------------ 144 (261)
T ss_dssp HHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHH------------------------------
T ss_pred HHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHH------------------------------
Confidence 9999999 99999999999999999999876654443322111
Q ss_pred CCCCCCcccHHHHHHHHHhhhcCCCchhhhhchHHHHHHHHHHHhhhcCCCCCCCccccccccCCCCCCCccccccCCCC
Q 009278 148 DPTTRSYLDQDDFRNMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPES 227 (538)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (538)
T Consensus 145 -------------------------------------------------------------------------------- 144 (261)
T 3qky_A 145 -------------------------------------------------------------------------------- 144 (261)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCccccHHHHHHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCC---CHHHHHHHHHHHHHh-------
Q 009278 228 EPEPEPMELTEEEKEAKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDE---DISYLTNRAAVYLEM------- 297 (538)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~------- 297 (538)
......++.+|.++...|++++|+..|+++++..|+ .+.+++.+|.+|..+
T Consensus 145 -------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~ 205 (261)
T 3qky_A 145 -------------------AKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRA 205 (261)
T ss_dssp -------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGG
T ss_pred -------------------HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhh
Confidence 123445788999999999999999999999999998 467999999999977
Q ss_pred ---CCHHHHHHHHHHHHHccccchhhHHHHHHHHHHhHHHHHHhhh
Q 009278 298 ---GKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAK 340 (538)
Q Consensus 298 ---~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (538)
|++++|+..|+++++..|+++.. ..+...++.++..+++
T Consensus 206 ~~~~~~~~A~~~~~~~~~~~p~~~~~----~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 206 RQPERYRRAVELYERLLQIFPDSPLL----RTAEELYTRARQRLTE 247 (261)
T ss_dssp GHHHHHHHHHHHHHHHHHHCTTCTHH----HHHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHCCCChHH----HHHHHHHHHHHHHHHH
Confidence 99999999999999999998654 3455556665555555
No 66
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.90 E-value=3.3e-23 Score=207.42 Aligned_cols=174 Identities=22% Similarity=0.315 Sum_probs=123.1
Q ss_pred HhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHH
Q 009278 245 ERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMI 324 (538)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 324 (538)
..|+.+.++.++|.++..+|++++|+.+|+++++++|++..++.++|.+|..+|++++|+..|+++++++|++
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~------- 76 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF------- 76 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------
Confidence 3566777777777777777777777777777777777777777777777777777777777777777777766
Q ss_pred HHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcCC
Q 009278 325 ARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQK 404 (538)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 404 (538)
+.++..+|.++..+++ +++|+..|+++++ ++|+++.++.++|.++...|+
T Consensus 77 ~~a~~nLg~~l~~~g~----~~~A~~~~~kAl~--------------------------l~P~~~~a~~~Lg~~~~~~g~ 126 (723)
T 4gyw_A 77 ADAYSNMGNTLKEMQD----VQGALQCYTRAIQ--------------------------INPAFADAHSNLASIHKDSGN 126 (723)
T ss_dssp HHHHHHHHHHHHHTTC----HHHHHHHHHHHHH--------------------------HCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHcCC----HHHHHHHHHHHHH--------------------------hCCCCHHHHHHHHHHHHHcCC
Confidence 5666677776666666 6666666666666 666666677777777777777
Q ss_pred hHHHHHHHHHHHhcCCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCC
Q 009278 405 YPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPT 455 (538)
Q Consensus 405 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 455 (538)
+++|+..|+++++++|+++.++.++|.++..+|++++|++.+++++++.|+
T Consensus 127 ~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 127 IPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVAD 177 (723)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHHHHHHHHHhChh
Confidence 777777777777777766667777777777777777777776666666544
No 67
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.90 E-value=1.1e-21 Score=174.78 Aligned_cols=215 Identities=13% Similarity=0.111 Sum_probs=171.1
Q ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHH
Q 009278 247 KEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDED---ISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKM 323 (538)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 323 (538)
+..+..++.+|..++..|++++|+..|+++++.+|++ +.+++.+|.++...|++++|+..|+++++..|+++..
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~--- 88 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRV--- 88 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTH---
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchh---
Confidence 4567889999999999999999999999999999999 8999999999999999999999999999999977543
Q ss_pred HHHHHHHhHHHHHH--------hhhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHH
Q 009278 324 IARALTRKGTALVK--------MAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREK 395 (538)
Q Consensus 324 ~~~~~~~~~~~~~~--------~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 395 (538)
..+++.+|.++.. .++ +++|+..|++++. ..|+++.+...+
T Consensus 89 -~~a~~~lg~~~~~~~~~~~~~~~~----~~~A~~~~~~~l~--------------------------~~p~~~~~~~a~ 137 (261)
T 3qky_A 89 -PQAEYERAMCYYKLSPPYELDQTD----TRKAIEAFQLFID--------------------------RYPNHELVDDAT 137 (261)
T ss_dssp -HHHHHHHHHHHHHHCCCTTSCCHH----HHHHHHHHHHHHH--------------------------HCTTCTTHHHHH
T ss_pred -HHHHHHHHHHHHHhcccccccchh----HHHHHHHHHHHHH--------------------------HCcCchhHHHHH
Confidence 5778889998888 777 8888888888888 555554443333
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCC---chHHHHHHHHHHHHc--
Q 009278 396 GNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPT---FSKGYTRKGAIQFFL-- 470 (538)
Q Consensus 396 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~~-- 470 (538)
+.+....++ ....++.+|.+|...|++++|+..|+++++..|+ .+.+++.+|.++..+
T Consensus 138 ~~~~~~~~~-----------------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~ 200 (261)
T 3qky_A 138 QKIRELRAK-----------------LARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAE 200 (261)
T ss_dssp HHHHHHHHH-----------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-----------------HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcc
Confidence 222211111 1223677888888888888888888888888777 456788888888866
Q ss_pred --------cCHHHHHHHHHHHhccCCCCH---HHHHHHHHHHHHhhhhccCCC
Q 009278 471 --------KEYDKALETYQEGLKHDPQNQ---ELLDGVRRCVQQINKAGRGEL 512 (538)
Q Consensus 471 --------g~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~~~~~~a~~ 512 (538)
|++++|+..|+++++..|+++ .+...++.++..+++++++..
T Consensus 201 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~~~~~ 253 (261)
T 3qky_A 201 QSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTELEGDAS 253 (261)
T ss_dssp TSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHTCTT
T ss_pred cchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHhhhhhH
Confidence 888999999999999999884 556677788888888776653
No 68
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.89 E-value=2.2e-22 Score=201.59 Aligned_cols=174 Identities=23% Similarity=0.292 Sum_probs=166.4
Q ss_pred hCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhc
Q 009278 279 LDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTE 358 (538)
Q Consensus 279 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 358 (538)
..|+++.++.++|.++..+|++++|+..|+++++++|++ +.++.++|.++..+|+ +++|+..|+++++
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~-------~~a~~nLg~~l~~~g~----~~eA~~~~~~Al~- 71 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEF-------AAAHSNLASVLQQQGK----LQEALMHYKEAIR- 71 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC-------HHHHHHHHHHHHHTTC----HHHHHHHHHHHHH-
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCC----HHHHHHHHHHHHH-
Confidence 478999999999999999999999999999999999998 7788888999999988 9999999999999
Q ss_pred CCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHhHHHHHHHHhCC
Q 009278 359 HRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGA 438 (538)
Q Consensus 359 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~ 438 (538)
++|+++.++.++|.++...|++++|+..|+++++++|+++.+++++|.+|..+|+
T Consensus 72 -------------------------l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~ 126 (723)
T 4gyw_A 72 -------------------------ISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGN 126 (723)
T ss_dssp -------------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred -------------------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 8999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHhcCCCchHHHHHHHHHHHHccCHHHHHHHHHHHhccCCC
Q 009278 439 MPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQ 489 (538)
Q Consensus 439 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 489 (538)
+++|+..|+++++++|+++.++.++|.++..+|++++|.+.|++++++.|+
T Consensus 127 ~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 127 IPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVAD 177 (723)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHHHHHHHHHhChh
Confidence 999999999999999999999999999999999999999999999987554
No 69
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.89 E-value=1.4e-20 Score=177.33 Aligned_cols=319 Identities=9% Similarity=0.005 Sum_probs=239.7
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHHHhccCCcch-----HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCch------
Q 009278 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNH-----VLYSNRSAAHASLHNYADALADAKKTVELKPDWS------ 70 (538)
Q Consensus 2 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------ 70 (538)
++.+..+|..++..|++++|+..+++++...|.+. .++..+|.++...|++++|+..+++++.+.|...
T Consensus 14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 93 (373)
T 1hz4_A 14 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYAL 93 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 35677899999999999999999999999877543 3678899999999999999999999998866432
Q ss_pred HHHHHHHHHHhhccCHHHHHHHHHhhhhcCCCcHHHHhhHHHHHHHHhhcccCCCCCCCCcccccccCCchhhcccCCCC
Q 009278 71 KGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPT 150 (538)
Q Consensus 71 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (538)
.++..+|.++...|++++|+..+++++...+.....
T Consensus 94 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~-------------------------------------------- 129 (373)
T 1hz4_A 94 WSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLE-------------------------------------------- 129 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCT--------------------------------------------
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccc--------------------------------------------
Confidence 347789999999999999999999998753211000
Q ss_pred CCCcccHHHHHHHHHhhhcCCCchhhhhchHHHHHHHHHHHhhhcCCCCCCCccccccccCCCCCCCccccccCCCCCCC
Q 009278 151 TRSYLDQDDFRNMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPE 230 (538)
Q Consensus 151 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (538)
T Consensus 130 -------------------------------------------------------------------------------- 129 (373)
T 1hz4_A 130 -------------------------------------------------------------------------------- 129 (373)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccccHHHHHHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCC-----CHHHHHHHHHHHHHhCCHHHHHH
Q 009278 231 PEPMELTEEEKEAKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDE-----DISYLTNRAAVYLEMGKYEECIK 305 (538)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~la~~~~~~~~~~~A~~ 305 (538)
..+.....+..+|.++...|++++|..++++++...|. ...++..+|.++...|++++|..
T Consensus 130 --------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 195 (373)
T 1hz4_A 130 --------------QLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARS 195 (373)
T ss_dssp --------------TSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHH
T ss_pred --------------cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 00123455677899999999999999999999998765 24678899999999999999999
Q ss_pred HHHHHHHccccchhhHHHHHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcC
Q 009278 306 DCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFD 385 (538)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 385 (538)
.+++++...+................+.++...|+ +++|...+.+++...+.. .
T Consensus 196 ~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~----~~~A~~~~~~a~~~~~~~----------------------~ 249 (373)
T 1hz4_A 196 QLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGD----KAAAANWLRHTAKPEFAN----------------------N 249 (373)
T ss_dssp HHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTC----HHHHHHHHHHSCCCCCTT----------------------C
T ss_pred HHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCC----HHHHHHHHHhCCCCCCCc----------------------c
Confidence 99999987544221111112222334455666777 999999998887633210 0
Q ss_pred CCchHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC------chhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCchHH
Q 009278 386 PKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKD------PRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKG 459 (538)
Q Consensus 386 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 459 (538)
+.....+..+|.++...|++++|...+++++...+.. ..++..+|.++...|++++|...+++++...+...
T Consensus 250 ~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~~g-- 327 (373)
T 1hz4_A 250 HFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTG-- 327 (373)
T ss_dssp GGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHC--
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcccc--
Confidence 1112356788999999999999999999998764432 24778889999999999999999999988754311
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHhccCCCCH
Q 009278 460 YTRKGAIQFFLKEYDKALETYQEGLKHDPQNQ 491 (538)
Q Consensus 460 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 491 (538)
....+...| +.....+++.+...|.+.
T Consensus 328 ---~~~~~~~~g--~~~~~ll~~~~~~~~~~~ 354 (373)
T 1hz4_A 328 ---FISHFVIEG--EAMAQQLRQLIQLNTLPE 354 (373)
T ss_dssp ---CCHHHHTTH--HHHHHHHHHHHHTTCSCH
T ss_pred ---HHHHHHHcc--HHHHHHHHHHHhCCCCch
Confidence 122333444 567778888888888643
No 70
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.89 E-value=6.8e-22 Score=181.26 Aligned_cols=177 Identities=20% Similarity=0.218 Sum_probs=153.8
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHHHhcc--------CCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhcc--------
Q 009278 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAISL--------SPDNHVLYSNRSAAHASLHNYADALADAKKTVEL-------- 65 (538)
Q Consensus 2 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-------- 65 (538)
++.+..+|..++..|++++|+..|++++.. .|....++..+|.++...|++++|+..+++++..
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 467899999999999999999999999994 6778899999999999999999999999999987
Q ss_pred CCCchHHHHHHHHHHhhccCHHHHHHHHHhhhhcCCCcHHHHhhHHHHHHHHhhcccCCCCCCCCcccccccCCchhhcc
Q 009278 66 KPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKL 145 (538)
Q Consensus 66 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (538)
.|....++..+|.++...|++++|+..|++++++.... .+
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~-------------~~--------------------------- 146 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKV-------------LG--------------------------- 146 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH-------------HC---------------------------
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHh-------------cC---------------------------
Confidence 46678899999999999999999999999998752100 00
Q ss_pred cCCCCCCCcccHHHHHHHHHhhhcCCCchhhhhchHHHHHHHHHHHhhhcCCCCCCCccccccccCCCCCCCccccccCC
Q 009278 146 TADPTTRSYLDQDDFRNMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKP 225 (538)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (538)
T Consensus 147 -------------------------------------------------------------------------------- 146 (311)
T 3nf1_A 147 -------------------------------------------------------------------------------- 146 (311)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCccccHHHHHHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHh
Q 009278 226 ESEPEPEPMELTEEEKEAKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALEL--------DDEDISYLTNRAAVYLEM 297 (538)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~ 297 (538)
...+....++..+|.++...|++++|+.+|++++.. .|....++..+|.++...
T Consensus 147 ------------------~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 208 (311)
T 3nf1_A 147 ------------------KDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQ 208 (311)
T ss_dssp ------------------TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHH
T ss_pred ------------------CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHc
Confidence 001345667888999999999999999999999998 677788999999999999
Q ss_pred CCHHHHHHHHHHHHHcccc
Q 009278 298 GKYEECIKDCDKAVERGRE 316 (538)
Q Consensus 298 ~~~~~A~~~~~~~~~~~~~ 316 (538)
|++++|+.++++++...|.
T Consensus 209 g~~~~A~~~~~~al~~~~~ 227 (311)
T 3nf1_A 209 GKFKQAETLYKEILTRAHE 227 (311)
T ss_dssp TCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 9999999999999987554
No 71
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.88 E-value=4.3e-22 Score=182.59 Aligned_cols=272 Identities=18% Similarity=0.122 Sum_probs=184.8
Q ss_pred cCCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhcc--------CCCchHHHHHHHHHHhhccCHHHHHHHHHhhhhcCCC
Q 009278 31 LSPDNHVLYSNRSAAHASLHNYADALADAKKTVEL--------KPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPN 102 (538)
Q Consensus 31 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 102 (538)
.+|....++..+|.++...|++++|+..+++++.+ .|....++..+|.++...|++++|+..|++++.....
T Consensus 22 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 101 (311)
T 3nf1_A 22 EIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREK 101 (311)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 46677899999999999999999999999999985 6778899999999999999999999999999865210
Q ss_pred cHHHHhhHHHHHHHHhhcccCCCCCCCCcccccccCCchhhcccCCCCCCCcccHHHHHHHHHhhhcCCCchhhhhchHH
Q 009278 103 NEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRNMMKDIQRNPNNLNLYLKDQR 182 (538)
Q Consensus 103 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 182 (538)
..
T Consensus 102 ~~------------------------------------------------------------------------------ 103 (311)
T 3nf1_A 102 TL------------------------------------------------------------------------------ 103 (311)
T ss_dssp HH------------------------------------------------------------------------------
T ss_pred Hh------------------------------------------------------------------------------
Confidence 00
Q ss_pred HHHHHHHHHhhhcCCCCCCCccccccccCCCCCCCccccccCCCCCCCCCCccccHHHHHHHHhHHHHHHHHHHHHHHHh
Q 009278 183 VMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKEAKERKEKALKEKEAGNAAYK 262 (538)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (538)
....+....++..+|.++..
T Consensus 104 ------------------------------------------------------------~~~~~~~~~~~~~l~~~~~~ 123 (311)
T 3nf1_A 104 ------------------------------------------------------------GKDHPAVAATLNNLAVLYGK 123 (311)
T ss_dssp ------------------------------------------------------------CTTCHHHHHHHHHHHHHHHT
T ss_pred ------------------------------------------------------------CCCChHHHHHHHHHHHHHHH
Confidence 00013456678889999999
Q ss_pred cccHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccch-hhHHHHHHHHHHhHH
Q 009278 263 KKEFEKAIEHYSSALELD--------DEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELR-SDFKMIARALTRKGT 333 (538)
Q Consensus 263 ~~~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 333 (538)
.|++++|+.+|+++++.. |....++..+|.++...|++++|+.++++++....... ........++..+|.
T Consensus 124 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~ 203 (311)
T 3nf1_A 124 RGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLAS 203 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 999999999999999874 55678899999999999999999999999998722110 001112678888999
Q ss_pred HHHHhhhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcCChHHHHHHHH
Q 009278 334 ALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYT 413 (538)
Q Consensus 334 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 413 (538)
++...++ +++|+..+++++...+... .....+.....+...+
T Consensus 204 ~~~~~g~----~~~A~~~~~~al~~~~~~~-----------------~~~~~~~~~~~~~~~~----------------- 245 (311)
T 3nf1_A 204 CYLKQGK----FKQAETLYKEILTRAHERE-----------------FGSVDDENKPIWMHAE----------------- 245 (311)
T ss_dssp HHHHHTC----HHHHHHHHHHHHHHHHHHH-----------------HC------CCHHHHHH-----------------
T ss_pred HHHHcCC----HHHHHHHHHHHHHHHHHhc-----------------CCCCCcchHHHHHHHH-----------------
Confidence 9999999 9999999999998321100 0001111111111111
Q ss_pred HHHhcCCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCchHHHHHHHHHHHHccCHHHHHHHHHHHhccCCC
Q 009278 414 ESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQ 489 (538)
Q Consensus 414 ~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 489 (538)
.+...+..+...+.+.+|...+.+++...|..+.++..+|.++...|++++|+.+|++++++.|+
T Consensus 246 -----------~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 246 -----------EREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp -----------HHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred -----------HHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 12223333344555566666666666666666666666666666666666666666666666553
No 72
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.88 E-value=1.3e-20 Score=177.57 Aligned_cols=213 Identities=20% Similarity=0.189 Sum_probs=176.1
Q ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCC-------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhh
Q 009278 248 EKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDE-------DISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSD 320 (538)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 320 (538)
..+.++..+|.++...|++++|+.+++++++..+. ...++..+|.+|...|++++|+.++++++.+.+.....
T Consensus 139 ~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~ 218 (378)
T 3q15_A 139 EKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQND 218 (378)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCH
Confidence 45677888999999999999999999999987543 24578899999999999999999999999987654222
Q ss_pred HHHHHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHH
Q 009278 321 FKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFF 400 (538)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~ 400 (538)
...+.++..+|.++...++ +++|+.++++++..... . .+|..+.++..+|.++.
T Consensus 219 -~~~~~~~~~lg~~y~~~~~----~~~A~~~~~~al~~~~~-------------------~--~~~~~~~~~~~la~~~~ 272 (378)
T 3q15_A 219 -RFIAISLLNIANSYDRSGD----DQMAVEHFQKAAKVSRE-------------------K--VPDLLPKVLFGLSWTLC 272 (378)
T ss_dssp -HHHHHHHHHHHHHHHHHTC----HHHHHHHHHHHHHHHHH-------------------H--CGGGHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHCCC----HHHHHHHHHHHHHHHHh-------------------h--CChhHHHHHHHHHHHHH
Confidence 2447899999999999999 99999999999983211 0 34666889999999999
Q ss_pred hcCChHHHHHHHHHHHhcCCC-----CchhHhHHHHHHHHhCC---chhHHHHHHHHHhcCCCchHHHHHHHHHHHHccC
Q 009278 401 KQQKYPEAIQHYTESLRRNPK-----DPRTYSNRAACYTKLGA---MPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKE 472 (538)
Q Consensus 401 ~~~~~~~A~~~~~~al~~~~~-----~~~~~~~la~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 472 (538)
..|++++|+.++++++++.+. ....+..++.++...++ +.+|+.++++. ...|.....+..+|.+|...|+
T Consensus 273 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~ 351 (378)
T 3q15_A 273 KAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFESSCH 351 (378)
T ss_dssp HTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTC
T ss_pred HCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHCCC
Confidence 999999999999999998553 23456678888888888 88888888772 3345556788899999999999
Q ss_pred HHHHHHHHHHHhccC
Q 009278 473 YDKALETYQEGLKHD 487 (538)
Q Consensus 473 ~~~A~~~~~~al~~~ 487 (538)
+++|..+|+++++..
T Consensus 352 ~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 352 FEQAAAFYRKVLKAQ 366 (378)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998653
No 73
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.88 E-value=1.3e-20 Score=191.88 Aligned_cols=315 Identities=15% Similarity=0.102 Sum_probs=247.1
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHhccCCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHHHHHhhccCH
Q 009278 7 AKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDY 86 (538)
Q Consensus 7 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~ 86 (538)
..|.++...|.|++|...|+++- .... .+...+...|++++|+++++++ +.+.+|+.+|.++...|++
T Consensus 1054 eIA~Iai~lglyEEAf~IYkKa~----~~~~---A~~VLie~i~nldrAiE~Aerv-----n~p~vWsqLAKAql~~G~~ 1121 (1630)
T 1xi4_A 1054 DIANIAISNELFEEAFAIFRKFD----VNTS---AVQVLIEHIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMV 1121 (1630)
T ss_pred HHHHHHHhCCCHHHHHHHHHHcC----CHHH---HHHHHHHHHhhHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCH
Confidence 35888999999999999999973 1111 1233344888899999988865 5688899999999999999
Q ss_pred HHHHHHHHhhhhcCCCcHHHHhhHHHHHHHHhhcccCCCCCCCCcccccccCCchhhcccCCCCCCCcccHHHHHHHHHh
Q 009278 87 IEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRNMMKD 166 (538)
Q Consensus 87 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (538)
++|+..|.++ ++++.
T Consensus 1122 kEAIdsYiKA-----dD~sa------------------------------------------------------------ 1136 (1630)
T 1xi4_A 1122 KEAIDSYIKA-----DDPSS------------------------------------------------------------ 1136 (1630)
T ss_pred HHHHHHHHhc-----CChHH------------------------------------------------------------
Confidence 9999999775 33333
Q ss_pred hhcCCCchhhhhchHHHHHHHHHHHhhhcCCCCCCCccccccccCCCCCCCccccccCCCCCCCCCCccccHHHHHHHHh
Q 009278 167 IQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKEAKER 246 (538)
Q Consensus 167 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (538)
T Consensus 1137 -------------------------------------------------------------------------------- 1136 (1630)
T 1xi4_A 1137 -------------------------------------------------------------------------------- 1136 (1630)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHHH
Q 009278 247 KEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIAR 326 (538)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 326 (538)
+...|.++.+.|+|++|+++|..+.+..++ +.+...+|.+|.+++++++ ++.|. ..++ ..
T Consensus 1137 ------y~eVa~~~~~lGkyEEAIeyL~mArk~~~e-~~Idt~LafaYAKl~rlee-le~fI----~~~n--------~a 1196 (1630)
T 1xi4_A 1137 ------YMEVVQAANTSGNWEELVKYLQMARKKARE-SYVETELIFALAKTNRLAE-LEEFI----NGPN--------NA 1196 (1630)
T ss_pred ------HHHHHHHHHHcCCHHHHHHHHHHHHhhccc-ccccHHHHHHHHhhcCHHH-HHHHH----hCCC--------HH
Confidence 444577777888888888888888887744 2233358888888888874 44332 1222 23
Q ss_pred HHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcCChH
Q 009278 327 ALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYP 406 (538)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 406 (538)
.+...|..+...++ +++|+.+|.++-....-..++..+|++++|++.+.++ .+..+|...+.++...|+|.
T Consensus 1197 d~~~iGd~le~eg~----YeeA~~~Y~kA~ny~rLA~tLvkLge~q~AIEaarKA-----~n~~aWkev~~acve~~Ef~ 1267 (1630)
T 1xi4_A 1197 HIQQVGDRCYDEKM----YDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFR 1267 (1630)
T ss_pred HHHHHHHHHHhcCC----HHHHHHHHHhhhHHHHHHHHHHHhCCHHHHHHHHHHh-----CCHHHHHHHHHHHhhhhHHH
Confidence 44567777777777 8888888888765555567788888888888888877 55689999999999999999
Q ss_pred HHHHHHHHHHhcCCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCchHHHHHHHHHHHH--ccCHHHHHHHHHHHh
Q 009278 407 EAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFF--LKEYDKALETYQEGL 484 (538)
Q Consensus 407 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~--~g~~~~A~~~~~~al 484 (538)
.|..+... +..+ ++.+..++..|...|.+++|+.++++++.++|.+...+..+|.++.+ -++..++++.|...+
T Consensus 1268 LA~~cgl~-Iiv~---~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~ri 1343 (1630)
T 1xi4_A 1268 LAQMCGLH-IVVH---ADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRV 1343 (1630)
T ss_pred HHHHHHHh-hhcC---HHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhc
Confidence 99998874 4444 45566899999999999999999999999999999999888888875 678999999999999
Q ss_pred ccCC-----CCHHHHHHHHHHHHHhhhhccCC
Q 009278 485 KHDP-----QNQELLDGVRRCVQQINKAGRGE 511 (538)
Q Consensus 485 ~~~p-----~~~~~~~~l~~~~~~~~~~~~a~ 511 (538)
.+.| ++...|..+..+|.+-|+++.|.
T Consensus 1344 ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1344 NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred ccchHhHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 9888 88999999999999999999887
No 74
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.87 E-value=1.8e-20 Score=162.50 Aligned_cols=188 Identities=12% Similarity=0.060 Sum_probs=162.9
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHHHhccCCcch---HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchH---HHHH
Q 009278 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNH---VLYSNRSAAHASLHNYADALADAKKTVELKPDWSK---GYSR 75 (538)
Q Consensus 2 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~ 75 (538)
++.++.+|..++..|+|++|+..|++++...|.++ .+++.+|.++...|++++|+..|+++++.+|+++. +++.
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 57899999999999999999999999999988764 78999999999999999999999999999999875 7899
Q ss_pred HHHHHhh------------------ccCHHHHHHHHHhhhhcCCCcHHHHhhHHHHHHHHhhcccCCCCCCCCccccccc
Q 009278 76 LGAAHLG------------------LQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFA 137 (538)
Q Consensus 76 la~~~~~------------------~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (538)
+|.++.. .|++++|+..|+++++..|+++.++..+..+....
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~-------------------- 143 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLK-------------------- 143 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHH--------------------
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHH--------------------
Confidence 9999876 57999999999999999999877654332221111
Q ss_pred CCchhhcccCCCCCCCcccHHHHHHHHHhhhcCCCchhhhhchHHHHHHHHHHHhhhcCCCCCCCccccccccCCCCCCC
Q 009278 138 GPEMWAKLTADPTTRSYLDQDDFRNMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPET 217 (538)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (538)
T Consensus 144 -------------------------------------------------------------------------------- 143 (225)
T 2yhc_A 144 -------------------------------------------------------------------------------- 143 (225)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccCCCCCCCCCCccccHHHHHHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCH---HHHHHHHHHH
Q 009278 218 SKEETRKPESEPEPEPMELTEEEKEAKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDI---SYLTNRAAVY 294 (538)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~la~~~ 294 (538)
.........+|.++...|++++|+..|+++++..|+++ .++..+|.++
T Consensus 144 -----------------------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~ 194 (225)
T 2yhc_A 144 -----------------------------DRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAY 194 (225)
T ss_dssp -----------------------------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHH
T ss_pred -----------------------------HHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHH
Confidence 11223446789999999999999999999999999986 6799999999
Q ss_pred HHhCCHHHHHHHHHHHHHccccch
Q 009278 295 LEMGKYEECIKDCDKAVERGRELR 318 (538)
Q Consensus 295 ~~~~~~~~A~~~~~~~~~~~~~~~ 318 (538)
..+|++++|+..++++....|++.
T Consensus 195 ~~~g~~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 195 RQMQMNAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp HHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred HHcCCcHHHHHHHHHHHhhCCCch
Confidence 999999999999999999888764
No 75
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.87 E-value=2.6e-21 Score=174.87 Aligned_cols=237 Identities=15% Similarity=0.118 Sum_probs=181.5
Q ss_pred CHHHHHHHHHHHhccCCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC------chHHHHHHHHHHhhccCHHHHH
Q 009278 17 DYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPD------WSKGYSRLGAAHLGLQDYIEAV 90 (538)
Q Consensus 17 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~~~~~~A~ 90 (538)
++++|+..|+++ |.+|...|++++|+..|++++.+.+. .+.++..+|.+|..+|++++|+
T Consensus 32 ~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~ 97 (292)
T 1qqe_A 32 KFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAV 97 (292)
T ss_dssp HHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 488888888887 67889999999999999999988532 2678999999999999999999
Q ss_pred HHHHhhhhcCCCcHHHHhhHHHHHHHHhhcccCCCCCCCCcccccccCCchhhcccCCCCCCCcccHHHHHHHHHhhhcC
Q 009278 91 NSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRNMMKDIQRN 170 (538)
Q Consensus 91 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 170 (538)
.+|++++++.|.....
T Consensus 98 ~~~~~Al~l~~~~g~~---------------------------------------------------------------- 113 (292)
T 1qqe_A 98 DSLENAIQIFTHRGQF---------------------------------------------------------------- 113 (292)
T ss_dssp HHHHHHHHHHHHTTCH----------------------------------------------------------------
T ss_pred HHHHHHHHHHHHcCCH----------------------------------------------------------------
Confidence 9999999865432100
Q ss_pred CCchhhhhchHHHHHHHHHHHhhhcCCCCCCCccccccccCCCCCCCccccccCCCCCCCCCCccccHHHHHHHHhHHHH
Q 009278 171 PNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKEAKERKEKA 250 (538)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (538)
...+
T Consensus 114 ----------------------------------------------------------------------------~~~a 117 (292)
T 1qqe_A 114 ----------------------------------------------------------------------------RRGA 117 (292)
T ss_dssp ----------------------------------------------------------------------------HHHH
T ss_pred ----------------------------------------------------------------------------HHHH
Confidence 1235
Q ss_pred HHHHHHHHHHHhc-ccHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHH
Q 009278 251 LKEKEAGNAAYKK-KEFEKAIEHYSSALELDDED------ISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKM 323 (538)
Q Consensus 251 ~~~~~~~~~~~~~-~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 323 (538)
.++..+|.++... |++++|+.+|++++++.|.. ..++..+|.++..+|++++|+.+|++++...|++......
T Consensus 118 ~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 197 (292)
T 1qqe_A 118 NFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWS 197 (292)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGG
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHH
Confidence 5678889999996 99999999999999998764 4678999999999999999999999999999987553323
Q ss_pred HHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHH--h
Q 009278 324 IARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFF--K 401 (538)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~--~ 401 (538)
...++..+|.++...++ +++|+..|++++...|... .......+..++..+. .
T Consensus 198 ~~~~~~~lg~~~~~~g~----~~~A~~~~~~al~l~p~~~---------------------~~~~~~~l~~l~~~~~~~~ 252 (292)
T 1qqe_A 198 LKDYFLKKGLCQLAATD----AVAAARTLQEGQSEDPNFA---------------------DSRESNFLKSLIDAVNEGD 252 (292)
T ss_dssp HHHHHHHHHHHHHHTTC----HHHHHHHHHGGGCC------------------------------HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHcCC----HHHHHHHHHHHHhhCCCCC---------------------CcHHHHHHHHHHHHHHcCC
Confidence 35678899999999999 9999999999999444311 0011123344455443 4
Q ss_pred cCChHHHHHHHHHHHhcCCCCchhHhHHHHH
Q 009278 402 QQKYPEAIQHYTESLRRNPKDPRTYSNRAAC 432 (538)
Q Consensus 402 ~~~~~~A~~~~~~al~~~~~~~~~~~~la~~ 432 (538)
.+++++|+..|++++.++|....++..+-..
T Consensus 253 ~~~~~~A~~~~~~~~~l~~~~~~~~~~~k~~ 283 (292)
T 1qqe_A 253 SEQLSEHCKEFDNFMRLDKWKITILNKIKES 283 (292)
T ss_dssp TTTHHHHHHHHTTSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCccHHHHHHHHHHHHHH
Confidence 5678888888888887777665555444443
No 76
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.87 E-value=4.2e-21 Score=173.51 Aligned_cols=229 Identities=12% Similarity=0.079 Sum_probs=183.7
Q ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhH
Q 009278 248 EKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDE------DISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDF 321 (538)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 321 (538)
.....+...|.++...|++++|+.+|.+++.+.+. ...++..+|.+|..+|++++|+.+|++++.+.|.... .
T Consensus 35 ~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~-~ 113 (292)
T 1qqe_A 35 EAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQ-F 113 (292)
T ss_dssp HHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-H
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCC-H
Confidence 34556777788999999999999999999998532 2578999999999999999999999999999876532 2
Q ss_pred HHHHHHHHHhHHHHHHh-hhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHH
Q 009278 322 KMIARALTRKGTALVKM-AKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFF 400 (538)
Q Consensus 322 ~~~~~~~~~~~~~~~~~-~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~ 400 (538)
...+.++..+|.++... ++ +++|+.+|++++...+... ..+....++..+|.++.
T Consensus 114 ~~~a~~~~~lg~~~~~~lg~----~~~A~~~~~~Al~~~~~~~--------------------~~~~~~~~~~~lg~~~~ 169 (292)
T 1qqe_A 114 RRGANFKFELGEILENDLHD----YAKAIDCYELAGEWYAQDQ--------------------SVALSNKCFIKCADLKA 169 (292)
T ss_dssp HHHHHHHHHHHHHHHHTTCC----HHHHHHHHHHHHHHHHHTT--------------------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcC----HHHHHHHHHHHHHHHHhCC--------------------ChHHHHHHHHHHHHHHH
Confidence 33467899999999995 99 9999999999998432100 00012467889999999
Q ss_pred hcCChHHHHHHHHHHHhcCCCCch-------hHhHHHHHHHHhCCchhHHHHHHHHHhcCCCchHH-----HHHHHHHHH
Q 009278 401 KQQKYPEAIQHYTESLRRNPKDPR-------TYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKG-----YTRKGAIQF 468 (538)
Q Consensus 401 ~~~~~~~A~~~~~~al~~~~~~~~-------~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~-----~~~l~~~~~ 468 (538)
..|++++|+.+|++++.+.|.+.. ++.++|.++..+|++++|+.+|+++++++|+.... +..++..+.
T Consensus 170 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~ 249 (292)
T 1qqe_A 170 LDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVN 249 (292)
T ss_dssp HTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHH
Confidence 999999999999999999987654 57889999999999999999999999999987653 445566554
Q ss_pred --HccCHHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 009278 469 --FLKEYDKALETYQEGLKHDPQNQELLDGVRRCV 501 (538)
Q Consensus 469 --~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 501 (538)
..+++++|+..|++++.++|.+..++..+.+.+
T Consensus 250 ~~~~~~~~~A~~~~~~~~~l~~~~~~~~~~~k~~~ 284 (292)
T 1qqe_A 250 EGDSEQLSEHCKEFDNFMRLDKWKITILNKIKESI 284 (292)
T ss_dssp TTCTTTHHHHHHHHTTSSCCCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHhccCCccHHHHHHHHHHHHHHh
Confidence 467899999999999999998888877777766
No 77
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.87 E-value=3e-20 Score=165.41 Aligned_cols=208 Identities=9% Similarity=0.021 Sum_probs=181.9
Q ss_pred HHHHHhcc--cHHHHHHHHHHHHhhCCCCHHHHHHHHHHH----HHh---CCHHHHHHHHHHHHHccccchhhHHHHHHH
Q 009278 257 GNAAYKKK--EFEKAIEHYSSALELDDEDISYLTNRAAVY----LEM---GKYEECIKDCDKAVERGRELRSDFKMIARA 327 (538)
Q Consensus 257 ~~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~la~~~----~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 327 (538)
+.++...+ ++++++.++..++..+|.+..+|..++.++ ... +++++++.+++++++.+|.+ ..+
T Consensus 74 ~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkn-------y~a 146 (306)
T 3dra_A 74 FNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKN-------HHV 146 (306)
T ss_dssp HHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTC-------HHH
T ss_pred HHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCC-------HHH
Confidence 33444445 788888999999999999999999998888 666 78999999999999999999 677
Q ss_pred HHHhHHHHHHhhhcccChh--HHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcCC-
Q 009278 328 LTRKGTALVKMAKCSKDYE--PAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQK- 404 (538)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~--~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~- 404 (538)
|...+.+...++. ++ +++..+.+++. .+|.+..+|...+.++...++
T Consensus 147 W~~R~~vl~~l~~----~~~~~EL~~~~~~i~--------------------------~d~~N~sAW~~R~~ll~~l~~~ 196 (306)
T 3dra_A 147 WSYRKWLVDTFDL----HNDAKELSFVDKVID--------------------------TDLKNNSAWSHRFFLLFSKKHL 196 (306)
T ss_dssp HHHHHHHHHHTTC----TTCHHHHHHHHHHHH--------------------------HCTTCHHHHHHHHHHHHSSGGG
T ss_pred HHHHHHHHHHhcc----cChHHHHHHHHHHHH--------------------------hCCCCHHHHHHHHHHHHhcccc
Confidence 7777777777777 77 88888888888 899999999999999999988
Q ss_pred -----hHHHHHHHHHHHhcCCCCchhHhHHHHHHHHhCCchh-HHHHHHHHHhcC---CCchHHHHHHHHHHHHccCHHH
Q 009278 405 -----YPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPE-GLKDADKCIELD---PTFSKGYTRKGAIQFFLKEYDK 475 (538)
Q Consensus 405 -----~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~-A~~~~~~al~~~---p~~~~~~~~l~~~~~~~g~~~~ 475 (538)
++++++++.+++..+|.+..+|+.++.++...|+..+ ...++.+++.++ |.++.++..++.++.+.|+.++
T Consensus 197 ~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~ 276 (306)
T 3dra_A 197 ATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNE 276 (306)
T ss_dssp CCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHH
T ss_pred chhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHH
Confidence 9999999999999999999999999999999999665 556888888776 8899999999999999999999
Q ss_pred HHHHHHHHhc-cCCCCHHHHHHHHHHH
Q 009278 476 ALETYQEGLK-HDPQNQELLDGVRRCV 501 (538)
Q Consensus 476 A~~~~~~al~-~~p~~~~~~~~l~~~~ 501 (538)
|+++|+.+.+ .+|-....|...+..+
T Consensus 277 A~~~~~~l~~~~Dpir~~yW~~~~~~l 303 (306)
T 3dra_A 277 SRTVYDLLKSKYNPIRSNFWDYQISKL 303 (306)
T ss_dssp HHHHHHHHHHTTCGGGHHHHHHHHHTC
T ss_pred HHHHHHHHHhccChHHHHHHHHHHhhc
Confidence 9999999997 8999999998776543
No 78
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.87 E-value=3.8e-21 Score=164.29 Aligned_cols=116 Identities=22% Similarity=0.201 Sum_probs=110.3
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHHHhccCCcchHHHHH----------------HHHHHHhcCCHHHHHHHHHHHhcc
Q 009278 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSN----------------RSAAHASLHNYADALADAKKTVEL 65 (538)
Q Consensus 2 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~----------------la~~~~~~g~~~~A~~~~~~al~~ 65 (538)
++.++.+|..++..|+|++|+..|++++..+|+++.+++. +|.++...|++++|+..|++++++
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 83 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK 83 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999999999999 999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHhhccCHHHHHHHHHhhhhcCCCcHHHHhhHHHHHHHH
Q 009278 66 KPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAA 117 (538)
Q Consensus 66 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 117 (538)
+|+++.+++.+|.++...|++++|+..|+++++++|+++.++..++.++...
T Consensus 84 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~ 135 (208)
T 3urz_A 84 APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLT 135 (208)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999888887765544
No 79
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.87 E-value=5.4e-20 Score=173.22 Aligned_cols=283 Identities=11% Similarity=0.024 Sum_probs=228.4
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCch-----HHHHHHHHHHhhccCHHHHHHHHHhhhhcCCCcHHHHhhH
Q 009278 36 HVLYSNRSAAHASLHNYADALADAKKTVELKPDWS-----KGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNEALKSGL 110 (538)
Q Consensus 36 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 110 (538)
..++..+|.++...|++++|+..+++++...|... .++..+|.++...|++++|...+++++.+.|......
T Consensus 14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--- 90 (373)
T 1hz4_A 14 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWH--- 90 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH---
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHH---
Confidence 46778899999999999999999999999887553 2678899999999999999999999998754322110
Q ss_pred HHHHHHHhhcccCCCCCCCCcccccccCCchhhcccCCCCCCCcccHHHHHHHHHhhhcCCCchhhhhchHHHHHHHHHH
Q 009278 111 ADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRNMMKDIQRNPNNLNLYLKDQRVMQALGVL 190 (538)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 190 (538)
T Consensus 91 -------------------------------------------------------------------------------- 90 (373)
T 1hz4_A 91 -------------------------------------------------------------------------------- 90 (373)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhhcCCCCCCCccccccccCCCCCCCccccccCCCCCCCCCCccccHHHHHHHHhHHHHHHHHHHHHHHHhcccHHHHH
Q 009278 191 LNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKEAKERKEKALKEKEAGNAAYKKKEFEKAI 270 (538)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 270 (538)
....++..+|.++...|++++|+
T Consensus 91 ---------------------------------------------------------~~~~~~~~la~~~~~~G~~~~A~ 113 (373)
T 1hz4_A 91 ---------------------------------------------------------YALWSLIQQSEILFAQGFLQTAW 113 (373)
T ss_dssp ---------------------------------------------------------HHHHHHHHHHHHHHHTTCHHHHH
T ss_pred ---------------------------------------------------------HHHHHHHHHHHHHHHCCCHHHHH
Confidence 13345677899999999999999
Q ss_pred HHHHHHHhhC--------CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHHHHHHHhHHHHHHhhhcc
Q 009278 271 EHYSSALELD--------DEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCS 342 (538)
Q Consensus 271 ~~~~~al~~~--------p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (538)
.++++++... |....++..+|.++...|++++|...+++++...+...... ...++..+|.++...|+
T Consensus 114 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--~~~~~~~la~~~~~~g~-- 189 (373)
T 1hz4_A 114 ETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQ--QLQCLAMLIQCSLARGD-- 189 (373)
T ss_dssp HHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGG--GHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHH--HHHHHHHHHHHHHHcCC--
Confidence 9999999875 33456788899999999999999999999999887653332 24678889999999999
Q ss_pred cChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHH-----HHHHHHHHhcCChHHHHHHHHHHHh
Q 009278 343 KDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEE-----REKGNEFFKQQKYPEAIQHYTESLR 417 (538)
Q Consensus 343 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-----~~la~~~~~~~~~~~A~~~~~~al~ 417 (538)
+++|...+++++...+. +..+..+ ...+.++...|++++|...+++++.
T Consensus 190 --~~~A~~~l~~a~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~ 243 (373)
T 1hz4_A 190 --LDNARSQLNRLENLLGN------------------------GKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAK 243 (373)
T ss_dssp --HHHHHHHHHHHHHHHTT------------------------SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCC
T ss_pred --HHHHHHHHHHHHHHHhc------------------------cCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCC
Confidence 99999999999874221 1111111 2345668899999999999999998
Q ss_pred cCCCCc----hhHhHHHHHHHHhCCchhHHHHHHHHHhcCCC------chHHHHHHHHHHHHccCHHHHHHHHHHHhccC
Q 009278 418 RNPKDP----RTYSNRAACYTKLGAMPEGLKDADKCIELDPT------FSKGYTRKGAIQFFLKEYDKALETYQEGLKHD 487 (538)
Q Consensus 418 ~~~~~~----~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 487 (538)
..|... ..+..+|.++...|++++|...+++++...+. ...++..+|.++...|++++|...|++++.+.
T Consensus 244 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~ 323 (373)
T 1hz4_A 244 PEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLA 323 (373)
T ss_dssp CCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred CCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence 776542 24678999999999999999999999887432 23478889999999999999999999999875
Q ss_pred C
Q 009278 488 P 488 (538)
Q Consensus 488 p 488 (538)
+
T Consensus 324 ~ 324 (373)
T 1hz4_A 324 N 324 (373)
T ss_dssp H
T ss_pred c
Confidence 4
No 80
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.87 E-value=1.4e-21 Score=197.36 Aligned_cols=208 Identities=12% Similarity=-0.053 Sum_probs=182.4
Q ss_pred hhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH--------HccccchhhHHHHHHHHHHhHHHHHHhhhcccChhHHH
Q 009278 278 ELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAV--------ERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAI 349 (538)
Q Consensus 278 ~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 349 (538)
..+|+++.+++..+ ...|++++|+..+++++ +.+|++ ..++..+|.++...++ +++|+
T Consensus 388 ~~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~-------~~~~~~~a~~~~~~g~----~~~A~ 453 (681)
T 2pzi_A 388 LVDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSES-------VELPLMEVRALLDLGD----VAKAT 453 (681)
T ss_dssp CCCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTC-------SHHHHHHHHHHHHHTC----HHHHH
T ss_pred cCCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccc-------hhHHHHHHHHHHhcCC----HHHHH
Confidence 56888888888777 78899999999999999 888888 5667777888888877 99999
Q ss_pred HHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHhHH
Q 009278 350 ETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNR 429 (538)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l 429 (538)
..|+++++ .+|+++.+++.+|.++...|++++|+..|+++++++|+++.+++++
T Consensus 454 ~~~~~al~--------------------------~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~l 507 (681)
T 2pzi_A 454 RKLDDLAE--------------------------RVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLAL 507 (681)
T ss_dssp HHHHHHHH--------------------------HHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHH
T ss_pred HHHHHHhc--------------------------cCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 99999999 8899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCchhHHHHHHHHHhcCCCchHHHHHHHHHHHHccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhcc
Q 009278 430 AACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDGVRRCVQQINKAGR 509 (538)
Q Consensus 430 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~ 509 (538)
|.++..+|++++ +..|+++++++|+++.+++++|.++..+|++++|+..|+++++++|++..++..++.++...++..+
T Consensus 508 g~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~ 586 (681)
T 2pzi_A 508 AATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRSTSE 586 (681)
T ss_dssp HHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-------
T ss_pred HHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCCCCC
Confidence 999999999999 9999999999999999999999999999999999999999999999999999999999988776555
Q ss_pred C-CCChHHHHHHHHhccC
Q 009278 510 G-ELSPEELKERQAKGMQ 526 (538)
Q Consensus 510 a-~~~~~~~~~~~~~~~~ 526 (538)
+ ...++++.+.+.....
T Consensus 587 ~~~~~~~~A~~~l~~~~~ 604 (681)
T 2pzi_A 587 VTEEQIRDAARRVEALPP 604 (681)
T ss_dssp CCHHHHHHHHHHHHTSCT
T ss_pred CCHHHHHHHHHHHhhCCC
Confidence 5 4455556666666544
No 81
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.87 E-value=5.1e-20 Score=163.91 Aligned_cols=171 Identities=9% Similarity=-0.024 Sum_probs=105.3
Q ss_pred cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHH--HHHHHHHHHHHccccchhhHHHHHHHHHHhHHHHHHhhhcc
Q 009278 265 EFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYE--ECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCS 342 (538)
Q Consensus 265 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~--~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (538)
++++++.++.++++.+|.+..+|..++.+....|.++ +++.+++++++.+|.+...+.....++..++.. .....
T Consensus 125 ~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~-~~~~~-- 201 (306)
T 3dra_A 125 DPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHL-ATDNT-- 201 (306)
T ss_dssp CTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGG-CCHHH--
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcccc-chhhh--
Confidence 4445555555555555555555555555555555555 555555555555555533222222222222110 00012
Q ss_pred cChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcCChHH-HHHHHHHHHhcC--
Q 009278 343 KDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPE-AIQHYTESLRRN-- 419 (538)
Q Consensus 343 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~-A~~~~~~al~~~-- 419 (538)
++++++++.+++. .+|.+..+|+.++.++...|+..+ ...++.+++.+.
T Consensus 202 --~~eEl~~~~~aI~--------------------------~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~ 253 (306)
T 3dra_A 202 --IDEELNYVKDKIV--------------------------KCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKD 253 (306)
T ss_dssp --HHHHHHHHHHHHH--------------------------HCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGT
T ss_pred --HHHHHHHHHHHHH--------------------------hCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCC
Confidence 6777777777777 777778888888888777777544 445666666655
Q ss_pred -CCCchhHhHHHHHHHHhCCchhHHHHHHHHHh-cCCCchHHHHHHHHH
Q 009278 420 -PKDPRTYSNRAACYTKLGAMPEGLKDADKCIE-LDPTFSKGYTRKGAI 466 (538)
Q Consensus 420 -~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~-~~p~~~~~~~~l~~~ 466 (538)
|.++.++..++.++...|+.++|+++|+.+.+ .+|-....|...+..
T Consensus 254 ~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~~~ 302 (306)
T 3dra_A 254 QVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQISK 302 (306)
T ss_dssp EESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHHHHhh
Confidence 66778888888888888888888888888886 688877777766643
No 82
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.87 E-value=3.1e-21 Score=181.83 Aligned_cols=253 Identities=12% Similarity=0.055 Sum_probs=212.2
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCC------CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHH
Q 009278 249 KALKEKEAGNAAYKKKEFEKAIEHYSSALELDD------EDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFK 322 (538)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 322 (538)
....++..|..+...|++++|+.+|++++...+ ....++..+|.+|...|++++|+.++++++...+.......
T Consensus 100 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~ 179 (378)
T 3q15_A 100 KYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSI 179 (378)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHH
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchh
Confidence 344678899999999999999999999998743 24578999999999999999999999999999887654344
Q ss_pred HHHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhc
Q 009278 323 MIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQ 402 (538)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~ 402 (538)
..+.++..+|.++...++ +++|+.+|++++...+.. ...+....++.++|.++...
T Consensus 180 ~~~~~~~~lg~~y~~~~~----~~~A~~~~~~al~~~~~~--------------------~~~~~~~~~~~~lg~~y~~~ 235 (378)
T 3q15_A 180 RTIQSLFVIAGNYDDFKH----YDKALPHLEAALELAMDI--------------------QNDRFIAISLLNIANSYDRS 235 (378)
T ss_dssp HHHHHHHHHHHHHHHTTC----HHHHHHHHHHHHHHHHHT--------------------TCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCC----HHHHHHHHHHHHHHHHHc--------------------CCHHHHHHHHHHHHHHHHHC
Confidence 568899999999999999 999999999999832110 01123456789999999999
Q ss_pred CChHHHHHHHHHHHh-----cCCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhcC-----CCchHHHHHHHHHHHHccC
Q 009278 403 QKYPEAIQHYTESLR-----RNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELD-----PTFSKGYTRKGAIQFFLKE 472 (538)
Q Consensus 403 ~~~~~A~~~~~~al~-----~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-----p~~~~~~~~l~~~~~~~g~ 472 (538)
|++++|+.+|++++. .+|..+.++..+|.++..+|++++|+.++++++++. |.....+..++.++...|+
T Consensus 236 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~ 315 (378)
T 3q15_A 236 GDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVD 315 (378)
T ss_dssp TCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCC
T ss_pred CCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCc
Confidence 999999999999999 777778899999999999999999999999999984 4445566778888888888
Q ss_pred ---HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhccCCCChHHHHHHHHhccC
Q 009278 473 ---YDKALETYQEGLKHDPQNQELLDGVRRCVQQINKAGRGELSPEELKERQAKGMQ 526 (538)
Q Consensus 473 ---~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 526 (538)
+.+|+.++++ ....|....+...++.++...|++++|...++++.+..++...
T Consensus 316 ~~~~~~al~~~~~-~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~ 371 (378)
T 3q15_A 316 ERKIHDLLSYFEK-KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDILK 371 (378)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhc
Confidence 8999999887 3445566778889999999999999999888887777665543
No 83
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.86 E-value=4.5e-22 Score=160.00 Aligned_cols=137 Identities=9% Similarity=0.052 Sum_probs=122.7
Q ss_pred hHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHhHHHHHHHHhCCchhHHHHHHHH
Q 009278 370 EAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKC 449 (538)
Q Consensus 370 ~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 449 (538)
++++|+..+.+++..+|+++..++.+|.+|+..|++++|+.+|+++++++|+++.+|..+|.+|...|++++|+.+|+++
T Consensus 12 ~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~a 91 (150)
T 4ga2_A 12 DVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRS 91 (150)
T ss_dssp HHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHH
Confidence 33333333444434888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCchHHHHHHHHHHHHccCHHHHHHH-HHHHhccCCCCHHHHHHHHHHHHHhhh
Q 009278 450 IELDPTFSKGYTRKGAIQFFLKEYDKALET-YQEGLKHDPQNQELLDGVRRCVQQINK 506 (538)
Q Consensus 450 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~-~~~al~~~p~~~~~~~~l~~~~~~~~~ 506 (538)
++++|+++.+++.+|.++...|++++|... ++++++++|+++.++...+.++...|+
T Consensus 92 l~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 92 VELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 999999999999999999999999887765 599999999999999999998887764
No 84
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.86 E-value=8.7e-19 Score=178.73 Aligned_cols=315 Identities=14% Similarity=0.107 Sum_probs=208.2
Q ss_pred hcCCHHHHHHHHHHHhccCCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHHHHHhhccCHHHHHHHH
Q 009278 14 SSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSY 93 (538)
Q Consensus 14 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~ 93 (538)
..|++++|+++++++ +.+.+|+.+|.++...|++++|+..|.++ +++..|...|.++...|++++|+++|
T Consensus 1088 ~i~nldrAiE~Aerv-----n~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL 1157 (1630)
T 1xi4_A 1088 HIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYL 1157 (1630)
T ss_pred HHhhHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHH
Confidence 667777777777755 56899999999999999999999999886 78899999999999999999999999
Q ss_pred HhhhhcCCCcHHHHhhHHHHHHHHhhcccCCCCCCCCcccccccCCchhhcccCCCCCCCcccHHHHHHHHHhhhcCCCc
Q 009278 94 KKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRNMMKDIQRNPNN 173 (538)
Q Consensus 94 ~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 173 (538)
..+.+..++. .+...++.++.+.++.. .+..++ .
T Consensus 1158 ~mArk~~~e~-~Idt~LafaYAKl~rle-------------------------------------ele~fI----~---- 1191 (1630)
T 1xi4_A 1158 QMARKKARES-YVETELIFALAKTNRLA-------------------------------------ELEEFI----N---- 1191 (1630)
T ss_pred HHHHhhcccc-cccHHHHHHHHhhcCHH-------------------------------------HHHHHH----h----
Confidence 9999887542 22224666666653320 011110 0
Q ss_pred hhhhhchHHHHHHHHHHHhhhcCCCCCCCccccccccCCCCCCCccccccCCCCCCCCCCccccHHHHHHHHhHHHHHHH
Q 009278 174 LNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKEAKERKEKALKE 253 (538)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (538)
. .....+
T Consensus 1192 ------------------------------------------------------------------------~-~n~ad~ 1198 (1630)
T 1xi4_A 1192 ------------------------------------------------------------------------G-PNNAHI 1198 (1630)
T ss_pred ------------------------------------------------------------------------C-CCHHHH
Confidence 0 122345
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHHHHHHHhHH
Q 009278 254 KEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGT 333 (538)
Q Consensus 254 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (538)
..+|..+...|+|++|+.+|.++ ..|..+|.++.++|++++|++.+.++.. ..+|...+.
T Consensus 1199 ~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA~n------------~~aWkev~~ 1258 (1630)
T 1xi4_A 1199 QQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKANS------------TRTWKEVCF 1258 (1630)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHhCC------------HHHHHHHHH
Confidence 67999999999999999999996 4889999999999999999999999832 356666677
Q ss_pred HHHHhhhcccChhHHHHHHHHHHhcCCC-----hhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHh--cCChH
Q 009278 334 ALVKMAKCSKDYEPAIETFQKALTEHRN-----PDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFK--QQKYP 406 (538)
Q Consensus 334 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~--~~~~~ 406 (538)
++...++ +..|..+... +..+++ ...+...|.+++|+..++.++.+++.+...+..+|.++.+ .++..
T Consensus 1259 acve~~E----f~LA~~cgl~-Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklm 1333 (1630)
T 1xi4_A 1259 ACVDGKE----FRLAQMCGLH-IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMR 1333 (1630)
T ss_pred HHhhhhH----HHHHHHHHHh-hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHH
Confidence 7777777 8888887765 332211 1234445555555555555555555555555555544432 33445
Q ss_pred HHHHHHHHHHhcCC-----CCchhHhHHHHHHHHhCCchhHHHHHHHHHhc------------CCCchHHHHHHHHHHHH
Q 009278 407 EAIQHYTESLRRNP-----KDPRTYSNRAACYTKLGAMPEGLKDADKCIEL------------DPTFSKGYTRKGAIQFF 469 (538)
Q Consensus 407 ~A~~~~~~al~~~~-----~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~------------~p~~~~~~~~l~~~~~~ 469 (538)
++++.|...+.+.| .+...|..+..+|.+-|+++.|+...-..... .+.+++.++.....|.
T Consensus 1334 Ehlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl- 1412 (1630)
T 1xi4_A 1334 EHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL- 1412 (1630)
T ss_pred HHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHHHH-
Confidence 55555555554444 44555555555555555555555444333222 3444555555444444
Q ss_pred ccCHHHHHHHHHHHh
Q 009278 470 LKEYDKALETYQEGL 484 (538)
Q Consensus 470 ~g~~~~A~~~~~~al 484 (538)
+....++..+..++
T Consensus 1413 -~~~P~~lndLl~~l 1426 (1630)
T 1xi4_A 1413 -EFKPLLLNDLLMVL 1426 (1630)
T ss_pred -hhChHHHHHHHHHh
Confidence 34444555555555
No 85
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.86 E-value=7.1e-21 Score=192.15 Aligned_cols=183 Identities=11% Similarity=0.034 Sum_probs=167.7
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHH--------hhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhh
Q 009278 249 KALKEKEAGNAAYKKKEFEKAIEHYSSAL--------ELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSD 320 (538)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al--------~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 320 (538)
.+.+++..| ...|++++|+..|++++ +.+|++..+++.+|.++...|++++|+..|+++++.+|++
T Consensus 393 ~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~--- 466 (681)
T 2pzi_A 393 DVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWR--- 466 (681)
T ss_dssp STTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCC---
T ss_pred CcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcch---
Confidence 334444444 78999999999999999 8999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHH
Q 009278 321 FKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFF 400 (538)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~ 400 (538)
..+++.+|.++...++ +++|+..|++++. .+|+++.++..+|.++.
T Consensus 467 ----~~a~~~lg~~~~~~g~----~~~A~~~~~~al~--------------------------l~P~~~~~~~~lg~~~~ 512 (681)
T 2pzi_A 467 ----WRLVWYRAVAELLTGD----YDSATKHFTEVLD--------------------------TFPGELAPKLALAATAE 512 (681)
T ss_dssp ----HHHHHHHHHHHHHHTC----HHHHHHHHHHHHH--------------------------HSTTCSHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHcCC----HHHHHHHHHHHHH--------------------------hCCCChHHHHHHHHHHH
Confidence 6788888888888888 9999999999999 89999999999999999
Q ss_pred hcCChHHHHHHHHHHHhcCCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCchHHHHHHHHHHHHccC
Q 009278 401 KQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKE 472 (538)
Q Consensus 401 ~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 472 (538)
..|++++ +..|+++++++|+++.+++++|.++..+|++++|+..|+++++++|++..+++++|.++...|+
T Consensus 513 ~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 513 LAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 9999999 9999999999999999999999999999999999999999999999999999999999987655
No 86
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.86 E-value=5.1e-20 Score=159.57 Aligned_cols=211 Identities=9% Similarity=-0.005 Sum_probs=149.7
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHH
Q 009278 249 KALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDI---SYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIA 325 (538)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 325 (538)
.+..++.+|..++..|++++|+..|+++++..|.++ .+++.+|.++...|++++|+..|+++++.+|+++.. .
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~----~ 78 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI----D 78 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTH----H
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcH----H
Confidence 356789999999999999999999999999999864 789999999999999999999999999999998653 3
Q ss_pred HHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcCCh
Q 009278 326 RALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKY 405 (538)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 405 (538)
.+++.+|.++...+. . .+..... ........|++++|+..|++++...|+++.++..+..+....+.
T Consensus 79 ~a~~~~g~~~~~~~~----~-----~~~~~~~---~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~- 145 (225)
T 2yhc_A 79 YVMYMRGLTNMALDD----S-----ALQGFFG---VDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDR- 145 (225)
T ss_dssp HHHHHHHHHHHHHHC--------------------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHhhhh----h-----hhhhhhc---cchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHH-
Confidence 567777777665543 1 1111110 01112223444444444444444555544333221111100000
Q ss_pred HHHHHHHHHHHhcCCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCch---HHHHHHHHHHHHccCHHHHHHHHHH
Q 009278 406 PEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFS---KGYTRKGAIQFFLKEYDKALETYQE 482 (538)
Q Consensus 406 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~ 482 (538)
.......+|.+|...|++++|+..|+++++..|+++ .+++.+|.++..+|++++|+..+++
T Consensus 146 ----------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~ 209 (225)
T 2yhc_A 146 ----------------LAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKI 209 (225)
T ss_dssp ----------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ----------------HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 011225789999999999999999999999999876 6799999999999999999999999
Q ss_pred HhccCCCCHH
Q 009278 483 GLKHDPQNQE 492 (538)
Q Consensus 483 al~~~p~~~~ 492 (538)
+....|++.+
T Consensus 210 l~~~~~~~~~ 219 (225)
T 2yhc_A 210 IAANSSNTLE 219 (225)
T ss_dssp HHHCCSCCCC
T ss_pred HHhhCCCchh
Confidence 9999888754
No 87
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.86 E-value=3.3e-20 Score=158.50 Aligned_cols=195 Identities=14% Similarity=0.117 Sum_probs=151.6
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHHHHH
Q 009278 249 KALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARAL 328 (538)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (538)
.+..++..|..++..|++++|+.+|+++++.+|+++.+++..+. .. . .. ......
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~-----~~----------------~-~~---~~~~~~ 57 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNV-----DK----------------N-SE---ISSKLA 57 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHS-----CT----------------T-SH---HHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhh-----cc----------------h-hh---hhHHHH
Confidence 34566777777777788888888888877777777776655331 00 0 00 013445
Q ss_pred HHhHHHHHHhhhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcCChHHH
Q 009278 329 TRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEA 408 (538)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 408 (538)
..+|.++...++ +++|+..|++++. .+|+++.++..+|.++...|++++|
T Consensus 58 ~~lg~~~~~~g~----~~~A~~~~~~al~--------------------------~~p~~~~~~~~lg~~~~~~g~~~~A 107 (208)
T 3urz_A 58 TELALAYKKNRN----YDKAYLFYKELLQ--------------------------KAPNNVDCLEACAEMQVCRGQEKDA 107 (208)
T ss_dssp HHHHHHHHHTTC----HHHHHHHHHHHHH--------------------------HCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHCCC----HHHHHHHHHHHHH--------------------------HCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 568888888888 9999999999998 8999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCchhHhHHHHHHHHhCC--chhHHHHHHHHHhcCCCchHHHHHHHHHHHHccCHHHHHHHHHHHhcc
Q 009278 409 IQHYTESLRRNPKDPRTYSNRAACYTKLGA--MPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKH 486 (538)
Q Consensus 409 ~~~~~~al~~~~~~~~~~~~la~~~~~~~~--~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 486 (538)
+..|+++++++|+++.+++.+|.+|...|+ ...+...+.+++...|. ..+++.+|.++...|++++|+.+|++++++
T Consensus 108 ~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~~~~g~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 108 LRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM-QYARYRDGLSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHH-HHHHHHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCch-hHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 999999999999999999999999987765 45677788887654432 347888999999999999999999999999
Q ss_pred CCCCHHHHHHHHHH
Q 009278 487 DPQNQELLDGVRRC 500 (538)
Q Consensus 487 ~p~~~~~~~~l~~~ 500 (538)
+|++ .+...+.++
T Consensus 187 ~P~~-~~~~~l~~i 199 (208)
T 3urz_A 187 FPST-EAQKTLDKI 199 (208)
T ss_dssp SCCH-HHHHHHHHH
T ss_pred CCCH-HHHHHHHHH
Confidence 9974 444445544
No 88
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.86 E-value=4.8e-21 Score=148.53 Aligned_cols=120 Identities=46% Similarity=0.879 Sum_probs=116.1
Q ss_pred HHcCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCchHHHH
Q 009278 382 EIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYT 461 (538)
Q Consensus 382 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 461 (538)
..++|+.+..+..+|..++..|+|++|+..|+++++++|.++.+|.++|.++..+|++++|+..|+++++++|+++.+|+
T Consensus 6 a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~ 85 (126)
T 4gco_A 6 AYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYI 85 (126)
T ss_dssp -CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHH
Confidence 34899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHccCHHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 009278 462 RKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDGVRRCV 501 (538)
Q Consensus 462 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 501 (538)
.+|.++..+|++++|+..|+++++++|++++++..++.++
T Consensus 86 ~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 86 RKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 9999999999999999999999999999999999998874
No 89
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.86 E-value=6.9e-20 Score=153.92 Aligned_cols=172 Identities=21% Similarity=0.162 Sum_probs=160.9
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHHHhccCCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHHHHHh
Q 009278 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHL 81 (538)
Q Consensus 2 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 81 (538)
+..++.+|..++..|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++..+|+++.++..+|.++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCHHHHHHHHHhhhhcCCCcHHHHhhHHHHHHHHhhcccCCCCCCCCcccccccCCchhhcccCCCCCCCcccHHHHH
Q 009278 82 GLQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFR 161 (538)
Q Consensus 82 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (538)
..|++++|+..|++++...|++..+
T Consensus 88 ~~~~~~~A~~~~~~~~~~~~~~~~~------------------------------------------------------- 112 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEANPINFNV------------------------------------------------------- 112 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHH-------------------------------------------------------
T ss_pred HhcCHHHHHHHHHHHHhcCcHhHHH-------------------------------------------------------
Confidence 9999999999999999998876544
Q ss_pred HHHHhhhcCCCchhhhhchHHHHHHHHHHHhhhcCCCCCCCccccccccCCCCCCCccccccCCCCCCCCCCccccHHHH
Q 009278 162 NMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEK 241 (538)
Q Consensus 162 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (538)
T Consensus 113 -------------------------------------------------------------------------------- 112 (186)
T 3as5_A 113 -------------------------------------------------------------------------------- 112 (186)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchh
Q 009278 242 EAKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRS 319 (538)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 319 (538)
+..+|.++...|++++|+.+++++++..|.++.++..+|.++...|++++|+..++++++..|++..
T Consensus 113 -----------~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 179 (186)
T 3as5_A 113 -----------RFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASV 179 (186)
T ss_dssp -----------HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCCG
T ss_pred -----------HHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchh
Confidence 3445777888899999999999999999999999999999999999999999999999999988754
No 90
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.84 E-value=2.5e-20 Score=144.52 Aligned_cols=112 Identities=37% Similarity=0.694 Sum_probs=109.4
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHHHhccCCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHHHHHh
Q 009278 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHL 81 (538)
Q Consensus 2 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 81 (538)
|+++..+|..+++.|+|++|+..|+++++.+|.++.+++.+|.++..+|++++|+..|+++++++|+++.+|+.+|.++.
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCHHHHHHHHHhhhhcCCCcHHHHhhHHHH
Q 009278 82 GLQDYIEAVNSYKKGLDIDPNNEALKSGLADA 113 (538)
Q Consensus 82 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 113 (538)
.+|++++|+..|+++++++|++.+++..++.+
T Consensus 93 ~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 99999999999999999999999999888765
No 91
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.84 E-value=1.3e-19 Score=152.18 Aligned_cols=171 Identities=18% Similarity=0.252 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHHHH
Q 009278 248 EKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARA 327 (538)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 327 (538)
.....+..+|..+...|++++|+..+++++..+|.+..++..+|.++...|++++|+..++++++..|.+ ..+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~ 78 (186)
T 3as5_A 6 IRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDN-------VKV 78 (186)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHH
T ss_pred hhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-------HHH
Confidence 3566677778888888888888888888888888777777778888877777777777777777766655 333
Q ss_pred HHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcCChHH
Q 009278 328 LTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPE 407 (538)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 407 (538)
+..+|.++...++ +++|+..+++++. ..|.++.++..+|.++...|++++
T Consensus 79 ~~~~a~~~~~~~~----~~~A~~~~~~~~~--------------------------~~~~~~~~~~~~a~~~~~~~~~~~ 128 (186)
T 3as5_A 79 ATVLGLTYVQVQK----YDLAVPLLIKVAE--------------------------ANPINFNVRFRLGVALDNLGRFDE 128 (186)
T ss_dssp HHHHHHHHHHHTC----HHHHHHHHHHHHH--------------------------HCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHhcC----HHHHHHHHHHHHh--------------------------cCcHhHHHHHHHHHHHHHcCcHHH
Confidence 4444444444444 4555444444444 344444444444444444444444
Q ss_pred HHHHHHHHHhcCCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCC
Q 009278 408 AIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPT 455 (538)
Q Consensus 408 A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 455 (538)
|+.++++++...|.++.++..+|.++...|++++|+.+++++++.+|+
T Consensus 129 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 176 (186)
T 3as5_A 129 AIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEG 176 (186)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 444444444444444444444444444444444444444444444443
No 92
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.84 E-value=8e-21 Score=152.67 Aligned_cols=147 Identities=14% Similarity=0.069 Sum_probs=131.3
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCChhHHHhh
Q 009278 289 NRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKL 368 (538)
Q Consensus 289 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 368 (538)
.||.++...|++++|+..+++++...|+. ...++.+|.+|...++ +++|+..|+++++
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~-------~~~~~~la~~y~~~~~----~~~A~~~~~~al~----------- 59 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPSPRQK-------SIKGFYFAKLYYEAKE----YDLAKKYICTYIN----------- 59 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCSHHHH-------HTTHHHHHHHHHHTTC----HHHHHHHHHHHHH-----------
T ss_pred HhHHHHHHcChHHHHHHHHHHhcccCccc-------HHHHHHHHHHHHHcCC----HHHHHHHHHHHHH-----------
Confidence 47888889999999999999999988877 4556677777777777 9999999999999
Q ss_pred hhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHhHHHHHHHHhCCchhHHHH-HH
Q 009278 369 NEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKD-AD 447 (538)
Q Consensus 369 ~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~-~~ 447 (538)
.+|+++.+|..+|.++...|++++|+..|+++++++|+++.+++.+|.++...|++++|... ++
T Consensus 60 ---------------~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~ 124 (150)
T 4ga2_A 60 ---------------VQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVE 124 (150)
T ss_dssp ---------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHH
T ss_pred ---------------hCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999987765 59
Q ss_pred HHHhcCCCchHHHHHHHHHHHHccC
Q 009278 448 KCIELDPTFSKGYTRKGAIQFFLKE 472 (538)
Q Consensus 448 ~al~~~p~~~~~~~~l~~~~~~~g~ 472 (538)
++++++|+++.++..++.++...|+
T Consensus 125 ~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 125 RAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 9999999999999999999988885
No 93
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.84 E-value=5.5e-21 Score=174.97 Aligned_cols=309 Identities=17% Similarity=0.138 Sum_probs=148.3
Q ss_pred HHhhcCCHHHHHHHHHHHhccCCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHHHHHhhccCHHHHH
Q 009278 11 AAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAV 90 (538)
Q Consensus 11 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~ 90 (538)
.....|+.++|..++++. +++.+|..+|.++...|++++|++.|.++ +++.++...+.++...|++++|+
T Consensus 12 ll~~~~~ld~A~~fae~~-----~~~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi 81 (449)
T 1b89_A 12 LIEHIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELV 81 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHccCHHHHHHHHHhC-----CChHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHH
Confidence 344678899999999998 34579999999999999999999999774 46678999999999999999999
Q ss_pred HHHHhhhhcCCCcHHHHhhHHHHHHHHhhcccCCCCCCCCcccccccCCchhhcccCCCCCCCcccHHHHHHHHHhhhcC
Q 009278 91 NSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRNMMKDIQRN 170 (538)
Q Consensus 91 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 170 (538)
.+++.+.+..++ +.+...++.++.+.|+..... +.+. .
T Consensus 82 ~yl~~ark~~~~-~~i~~~Li~~Y~Klg~l~e~e----------------------------------------~f~~-~ 119 (449)
T 1b89_A 82 KYLQMARKKARE-SYVETELIFALAKTNRLAELE----------------------------------------EFIN-G 119 (449)
T ss_dssp ----------------------------CHHHHT----------------------------------------TTTT-C
T ss_pred HHHHHHHHhCcc-chhHHHHHHHHHHhCCHHHHH----------------------------------------HHHc-C
Confidence 999999885443 666777777777776542111 0000 0
Q ss_pred CCchhhhhchHHHHHHHHHHHhhhcCCCCCCCccccccccCCCCCCCccccccCCCCCCCCCCccccHHHHHHHHhHHHH
Q 009278 171 PNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKEAKERKEKA 250 (538)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (538)
| ..
T Consensus 120 p-----------------------------------------------------------------------------n~ 122 (449)
T 1b89_A 120 P-----------------------------------------------------------------------------NN 122 (449)
T ss_dssp C-------------------------------------------------------------------------------
T ss_pred C-----------------------------------------------------------------------------cH
Confidence 0 12
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHHHHHHH
Q 009278 251 LKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTR 330 (538)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (538)
..+..+|..++..|.|++|..+|.++ ..+..+|.++.++|++++|++.+.++ .+ ..+|..
T Consensus 123 ~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~-------~~~Wk~ 182 (449)
T 1b89_A 123 AHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NS-------TRTWKE 182 (449)
T ss_dssp --------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TC-------HHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHc-----CC-------chhHHH
Confidence 36888999999999999999999987 46889999999999999999999999 23 455666
Q ss_pred hHHHHHHhhhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcCChHHHHH
Q 009278 331 KGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQ 410 (538)
Q Consensus 331 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 410 (538)
.+.++...++ ++.|..+.... . ..| +-...+...|.+.|++++|+.
T Consensus 183 v~~aCv~~~e----f~lA~~~~l~L-~--------------------------~~a---d~l~~lv~~Yek~G~~eEai~ 228 (449)
T 1b89_A 183 VCFACVDGKE----FRLAQMCGLHI-V--------------------------VHA---DELEELINYYQDRGYFEELIT 228 (449)
T ss_dssp HHHHHHHTTC----HHHHHHTTTTT-T--------------------------TCH---HHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHcCc----HHHHHHHHHHH-H--------------------------hCH---hhHHHHHHHHHHCCCHHHHHH
Confidence 6666666666 99986655432 1 222 334457788999999999999
Q ss_pred HHHHHHhcCCCCchhHhHHHHHHHH--hCCchhHHHHHHHHHhcCC-----CchHHHHHHHHHHHHccCHHHHHHHHHHH
Q 009278 411 HYTESLRRNPKDPRTYSNRAACYTK--LGAMPEGLKDADKCIELDP-----TFSKGYTRKGAIQFFLKEYDKALETYQEG 483 (538)
Q Consensus 411 ~~~~al~~~~~~~~~~~~la~~~~~--~~~~~~A~~~~~~al~~~p-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 483 (538)
++++++.+++.+..++..+|.+|.+ .++..+.++.|...+.+.| +++..|..+..+|...++++.|+..+-..
T Consensus 229 lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h 308 (449)
T 1b89_A 229 MLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNH 308 (449)
T ss_dssp HHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhC
Confidence 9999999999899999998888764 4567778888877777777 77888999999999999999998877666
Q ss_pred hcc------------CCCCHHHHHHHHHHHH
Q 009278 484 LKH------------DPQNQELLDGVRRCVQ 502 (538)
Q Consensus 484 l~~------------~p~~~~~~~~l~~~~~ 502 (538)
... .+.|.++++.....|.
T Consensus 309 ~~~a~~~~~f~~~~~kv~n~elyYkai~fyl 339 (449)
T 1b89_A 309 PTDAWKEGQFKDIITKVANVELYYRAIQFYL 339 (449)
T ss_dssp TTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH
T ss_pred ChhhhhhHHHHHHHhchhHHHHHHHHHHHHH
Confidence 554 6777888877776665
No 94
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.82 E-value=1.7e-17 Score=148.32 Aligned_cols=166 Identities=11% Similarity=0.068 Sum_probs=146.8
Q ss_pred HHHhhcCCHH-HHHHHHHHHhccCCcchHHHHHHHHHHHhcCC----------HHHHHHHHHHHhccCCCchHHHHHHHH
Q 009278 10 NAAFSSGDYE-AAVRHFTEAISLSPDNHVLYSNRSAAHASLHN----------YADALADAKKTVELKPDWSKGYSRLGA 78 (538)
Q Consensus 10 ~~~~~~g~~~-~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~la~ 78 (538)
......|++. +|+..+.+++..+|.+..+|..++.++..++. +++++.+++.++..+|.+..+|..++.
T Consensus 37 ~~~~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~w 116 (331)
T 3dss_A 37 FQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCW 116 (331)
T ss_dssp HHHHHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 3345677876 89999999999999999999999999998876 789999999999999999999999999
Q ss_pred HHhhccC--HHHHHHHHHhhhhcCCCcHHHHhhHHHHHHHHhhcccCCCCCCCCcccccccCCchhhcccCCCCCCCccc
Q 009278 79 AHLGLQD--YIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLD 156 (538)
Q Consensus 79 ~~~~~~~--~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (538)
++...++ +++++.++.++++.+|.|..+|...+.+
T Consensus 117 lL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~v------------------------------------------- 153 (331)
T 3dss_A 117 LLSRLPEPNWARELELCARFLEADERNFHCWDYRRFV------------------------------------------- 153 (331)
T ss_dssp HHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-------------------------------------------
T ss_pred HHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHH-------------------------------------------
Confidence 9999994 8999999999999999998887665443
Q ss_pred HHHHHHHHHhhhcCCCchhhhhchHHHHHHHHHHHhhhcCCCCCCCccccccccCCCCCCCccccccCCCCCCCCCCccc
Q 009278 157 QDDFRNMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMEL 236 (538)
Q Consensus 157 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (538)
T Consensus 154 -------------------------------------------------------------------------------- 153 (331)
T 3dss_A 154 -------------------------------------------------------------------------------- 153 (331)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cHHHHHHHHhHHHHHHHHHHHHHHHhccc-HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh--------------CCHH
Q 009278 237 TEEEKEAKERKEKALKEKEAGNAAYKKKE-FEKAIEHYSSALELDDEDISYLTNRAAVYLEM--------------GKYE 301 (538)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--------------~~~~ 301 (538)
....|. +++++.++.++++.+|.+..+|..++.++... +.++
T Consensus 154 -----------------------l~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~ 210 (331)
T 3dss_A 154 -----------------------AAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLL 210 (331)
T ss_dssp -----------------------HHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHH
T ss_pred -----------------------HHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHH
Confidence 333455 68999999999999999999999999999887 5689
Q ss_pred HHHHHHHHHHHccccchhhH
Q 009278 302 ECIKDCDKAVERGRELRSDF 321 (538)
Q Consensus 302 ~A~~~~~~~~~~~~~~~~~~ 321 (538)
++++++.+++..+|++...|
T Consensus 211 eEle~~~~ai~~~P~d~SaW 230 (331)
T 3dss_A 211 KELELVQNAFFTDPNDQSAW 230 (331)
T ss_dssp HHHHHHHHHHHHSTTCHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHH
Confidence 99999999999999995554
No 95
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.82 E-value=1.9e-19 Score=162.37 Aligned_cols=165 Identities=19% Similarity=0.168 Sum_probs=140.0
Q ss_pred hhcCCHHHHHHHHHHHhcc--------CCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhcc--------CCCchHHHHHH
Q 009278 13 FSSGDYEAAVRHFTEAISL--------SPDNHVLYSNRSAAHASLHNYADALADAKKTVEL--------KPDWSKGYSRL 76 (538)
Q Consensus 13 ~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l 76 (538)
...|++++|+..|+++++. +|..+.++..+|.++...|++++|+..+++++.+ +|....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4567888888888888873 3667899999999999999999999999999987 46778899999
Q ss_pred HHHHhhccCHHHHHHHHHhhhhcCCCcHHHHhhHHHHHHHHhhcccCCCCCCCCcccccccCCchhhcccCCCCCCCccc
Q 009278 77 GAAHLGLQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLD 156 (538)
Q Consensus 77 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (538)
|.++...|++++|+..|++++.+.....
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~---------------------------------------------------- 119 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVL---------------------------------------------------- 119 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHH----------------------------------------------------
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHc----------------------------------------------------
Confidence 9999999999999999999987521000
Q ss_pred HHHHHHHHHhhhcCCCchhhhhchHHHHHHHHHHHhhhcCCCCCCCccccccccCCCCCCCccccccCCCCCCCCCCccc
Q 009278 157 QDDFRNMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMEL 236 (538)
Q Consensus 157 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (538)
T Consensus 120 -------------------------------------------------------------------------------- 119 (283)
T 3edt_B 120 -------------------------------------------------------------------------------- 119 (283)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cHHHHHHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHhCCHHHHHHHHH
Q 009278 237 TEEEKEAKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALEL--------DDEDISYLTNRAAVYLEMGKYEECIKDCD 308 (538)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~ 308 (538)
....+....++..+|.++...|++++|+.+|+++++. .|....++..+|.++...|++++|+.+++
T Consensus 120 ------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 193 (283)
T 3edt_B 120 ------GKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYK 193 (283)
T ss_dssp ------CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred ------CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 0001345677888999999999999999999999998 77778899999999999999999999999
Q ss_pred HHHHccc
Q 009278 309 KAVERGR 315 (538)
Q Consensus 309 ~~~~~~~ 315 (538)
+++...+
T Consensus 194 ~~l~~~~ 200 (283)
T 3edt_B 194 EILTRAH 200 (283)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998744
No 96
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.82 E-value=1.1e-17 Score=149.51 Aligned_cols=235 Identities=12% Similarity=0.079 Sum_probs=194.3
Q ss_pred HhcccHH-HHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCC----------HHHHHHHHHHHHHccccchhhHHHHHHHHH
Q 009278 261 YKKKEFE-KAIEHYSSALELDDEDISYLTNRAAVYLEMGK----------YEECIKDCDKAVERGRELRSDFKMIARALT 329 (538)
Q Consensus 261 ~~~~~~~-~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~----------~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (538)
...|+++ +|+.++.+++..+|++..+|...+.++...+. +++++.+++.++..+|++ ..+|.
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKn-------y~aW~ 112 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKS-------YGTWH 112 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTC-------HHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCC-------HHHHH
Confidence 4566665 89999999999999999999999999988876 689999999999999999 55666
Q ss_pred HhHHHHHHhhhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcCC-hHHH
Q 009278 330 RKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQK-YPEA 408 (538)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-~~~A 408 (538)
..+.++..++. ..+++++.++.+++. .+|.+..+|...+.++...|. ++++
T Consensus 113 hR~wlL~~l~~--~~~~~EL~~~~k~l~--------------------------~dprNy~AW~~R~~vl~~l~~~~~ee 164 (331)
T 3dss_A 113 HRCWLLSRLPE--PNWARELELCARFLE--------------------------ADERNFHCWDYRRFVAAQAAVAPAEE 164 (331)
T ss_dssp HHHHHHHHCSS--CCHHHHHHHHHHHHH--------------------------HCTTCHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHHhccCc--ccHHHHHHHHHHHHH--------------------------hCCCCHHHHHHHHHHHHHhCcCHHHH
Confidence 66666555542 116778888777777 899999999999999999999 5999
Q ss_pred HHHHHHHHhcCCCCchhHhHHHHHHHHh--------------CCchhHHHHHHHHHhcCCCchHHHHHHHHHHHHc----
Q 009278 409 IQHYTESLRRNPKDPRTYSNRAACYTKL--------------GAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFL---- 470 (538)
Q Consensus 409 ~~~~~~al~~~~~~~~~~~~la~~~~~~--------------~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~---- 470 (538)
+.++.++++.+|.+..+|..++.++... +.++++++++.+++..+|++..+|+.+..++...
T Consensus 165 l~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~ 244 (331)
T 3dss_A 165 LAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRC 244 (331)
T ss_dssp HHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGG
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCcc
Confidence 9999999999999999999999999887 5688999999999999999999998777776665
Q ss_pred -------cCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhccCCCChHHHHHHHHhccC-Cchhhhhc
Q 009278 471 -------KEYDKALETYQEGLKHDPQNQELLDGVRRCVQQINKAGRGELSPEELKERQAKGMQ-DPKFRTYS 534 (538)
Q Consensus 471 -------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~p~~~~~~ 534 (538)
+.++++++++++++++.|++...+..++.+...+.. ....++....+.+... ||.=.+.+
T Consensus 245 ~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~----~~~~~~~~~~l~~l~~~Dp~r~~~y 312 (331)
T 3dss_A 245 ELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDP----LLYEKETLQYFSTLKAVDPMRAAYL 312 (331)
T ss_dssp GCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCT----TTTHHHHHHHHHHHHHHCGGGHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcc----cccHHHHHHHHHHHHHhCcchhhHH
Confidence 568999999999999999997776666555444422 2234566778888887 88765544
No 97
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.82 E-value=1.2e-16 Score=158.09 Aligned_cols=439 Identities=11% Similarity=0.004 Sum_probs=246.8
Q ss_pred HHHHHHHHHHHhccCCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHHHHHhhccC---HHHHHHHHH
Q 009278 18 YEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQD---YIEAVNSYK 94 (538)
Q Consensus 18 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~---~~~A~~~~~ 94 (538)
..+-+..|++.+..+|.+...|..+.......+.++.+...|++++...|.....|...+..-...++ ++.+...|+
T Consensus 48 ~~d~i~~lE~~l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfe 127 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLA 127 (679)
T ss_dssp CSCHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHH
Confidence 45667889999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred hhhhcCC--CcHHHHhhHHHHHHHHhhcccCCCCCCCCcccccccCCchhhcccCCCCCCCcccHHHHHHHHHhhhc-CC
Q 009278 95 KGLDIDP--NNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRNMMKDIQR-NP 171 (538)
Q Consensus 95 ~al~~~p--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~ 171 (538)
+++...| .+.+.|..........+...... ... .-.....++.++..+.. ++
T Consensus 128 Ral~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~--------------~~~-----------r~~vr~~FErAl~~vG~~d~ 182 (679)
T 4e6h_A 128 RCLSKELGNNDLSLWLSYITYVRKKNDIITGG--------------EEA-----------RNIVIQAFQVVVDKCAIFEP 182 (679)
T ss_dssp HHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTH--------------HHH-----------HHHHHHHHHHHHHHTTTTCS
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHHhccccccc--------------chh-----------HHHHHHHHHHHHHHhCcccc
Confidence 9999984 56778877766554432210000 000 00001233333333334 44
Q ss_pred CchhhhhchHHHH----------------HHHHHHHhhhcCCCCCCC--------ccccccccCC------CCCCCcc--
Q 009278 172 NNLNLYLKDQRVM----------------QALGVLLNVKFKGPTGGD--------DVEMQDEDAP------KGPETSK-- 219 (538)
Q Consensus 172 ~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~------~~~~~~~-- 219 (538)
.....|.....+. .....+.... ..+.... ..+..+.... .....+.
T Consensus 183 ~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL-~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~A 261 (679)
T 4e6h_A 183 KSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLL-CQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNA 261 (679)
T ss_dssp SCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHT-TSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHH-hCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHH
Confidence 4433332221111 1111111111 0000000 0000000000 0000000
Q ss_pred --------ccccCCCCC-CCCC----CccccHHHHHHHHhHHHHHHHHHHHHHHHhcc-------cHHHHHHHHHHHHhh
Q 009278 220 --------EETRKPESE-PEPE----PMELTEEEKEAKERKEKALKEKEAGNAAYKKK-------EFEKAIEHYSSALEL 279 (538)
Q Consensus 220 --------~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~A~~~~~~al~~ 279 (538)
......... +... ...+.... .........|......-...+ ..+.....|++++..
T Consensus 262 r~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~---~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~ 338 (679)
T 4e6h_A 262 RSLYQDWLNITKGLKRNLPITLNQATESNLPKPN---EYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH 338 (679)
T ss_dssp HHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTT---CCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHhhccccccccchhccCCCCc---hhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH
Confidence 000000000 0000 00000000 001122333333333322221 234567889999999
Q ss_pred CCCCHHHHHHHHHHHHHhCCHHHHH-HHHHHHHHccccchhhHHHHHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhc
Q 009278 280 DDEDISYLTNRAAVYLEMGKYEECI-KDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTE 358 (538)
Q Consensus 280 ~p~~~~~~~~la~~~~~~~~~~~A~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 358 (538)
.|.++.+|+..+..+...|+.++|. ..|++++...|.+ ..+++..+......++ ++.|...|++++..
T Consensus 339 ~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s-------~~Lwl~~a~~ee~~~~----~e~aR~iyek~l~~ 407 (679)
T 4e6h_A 339 VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNS-------AVLAFSLSEQYELNTK----IPEIETTILSCIDR 407 (679)
T ss_dssp TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTC----HHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHhCC----HHHHHHHHHHHHHH
Confidence 9999999999999999999999997 9999999999987 3445555555566666 89999999988873
Q ss_pred CCChhHHHhhhhHHHHHHHHHHHHHcCC-----------CchHHHHHHHHHHHhcCChHHHHHHHHHHHhc-CCCCchhH
Q 009278 359 HRNPDTLKKLNEAEKAKKELEQQEIFDP-----------KIADEEREKGNEFFKQQKYPEAIQHYTESLRR-NPKDPRTY 426 (538)
Q Consensus 359 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~ 426 (538)
.+. .++......| ....+|...+....+.|+.+.|..+|.+|++. .+....+|
T Consensus 408 l~~---------------~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~ly 472 (679)
T 4e6h_A 408 IHL---------------DLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIY 472 (679)
T ss_dssp HHH---------------HHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHH
T ss_pred HHH---------------HhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHH
Confidence 110 0000000012 12345555666666666666666666666655 33334455
Q ss_pred hHHHHHHHHhC-CchhHHHHHHHHHhcCCCchHHHHHHHHHHHHccCHHHHHHHHHHHhccCC---CCHHHHHHHHHHHH
Q 009278 427 SNRAACYTKLG-AMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDP---QNQELLDGVRRCVQ 502 (538)
Q Consensus 427 ~~la~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~l~~~~~ 502 (538)
...|.+....+ +++.|...|+.+++..|+++..|...+......|+.+.|...|++++...| ....+|..+.....
T Consensus 473 i~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~ 552 (679)
T 4e6h_A 473 LENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFES 552 (679)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 55555544443 366666666666666666666666666666666666666666666666655 24455555555555
Q ss_pred HhhhhccCC
Q 009278 503 QINKAGRGE 511 (538)
Q Consensus 503 ~~~~~~~a~ 511 (538)
..|....+.
T Consensus 553 ~~G~~~~~~ 561 (679)
T 4e6h_A 553 KVGSLNSVR 561 (679)
T ss_dssp HTCCSHHHH
T ss_pred HcCCHHHHH
Confidence 555554433
No 98
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.81 E-value=7.8e-20 Score=145.61 Aligned_cols=122 Identities=15% Similarity=0.099 Sum_probs=113.7
Q ss_pred hHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHhHHHHHHHHhCCchhHHHHHHHH
Q 009278 370 EAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKC 449 (538)
Q Consensus 370 ~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 449 (538)
++..+-..+.+++.++|+++.+++.+|.++...|++++|+..|++++.++|.++.+|+++|.++..+|++++|+.+|+++
T Consensus 17 ~~~~~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~a 96 (151)
T 3gyz_A 17 DAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVA 96 (151)
T ss_dssp HHHHTSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHCCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 33334445566667899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCchHHHHHHHHHHHHccCHHHHHHHHHHHhccCCCCH
Q 009278 450 IELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQ 491 (538)
Q Consensus 450 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 491 (538)
++++|+++.+++++|.++..+|++++|+.+|++++++.|+++
T Consensus 97 l~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 97 FALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 999999999999999999999999999999999999999875
No 99
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.80 E-value=7.5e-21 Score=174.12 Aligned_cols=228 Identities=11% Similarity=0.052 Sum_probs=142.3
Q ss_pred HHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHHHHHHHhHHHHH
Q 009278 257 GNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALV 336 (538)
Q Consensus 257 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (538)
+..+...|++++|+.+++.+++..++ +.+...++.+|.++|++.++.++++. |+ ..++..+|..+.
T Consensus 68 ~~~ae~~g~~EeAi~yl~~ark~~~~-~~i~~~Li~~Y~Klg~l~e~e~f~~~-----pn--------~~a~~~IGd~~~ 133 (449)
T 1b89_A 68 VQAANTSGNWEELVKYLQMARKKARE-SYVETELIFALAKTNRLAELEEFING-----PN--------NAHIQQVGDRCY 133 (449)
T ss_dssp ------------------------------------------CHHHHTTTTTC-----C---------------------
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcc-chhHHHHHHHHHHhCCHHHHHHHHcC-----Cc--------HHHHHHHHHHHH
Confidence 33445567888888877777775333 66677778888888888887766642 32 236777777777
Q ss_pred HhhhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 009278 337 KMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESL 416 (538)
Q Consensus 337 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 416 (538)
..|. +++|..+|.++-....-..++..+|++++|++.+.++ .++..|...+.++...|+++.|..+... +
T Consensus 134 ~~g~----yeeA~~~Y~~a~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L 203 (449)
T 1b89_A 134 DEKM----YDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-I 203 (449)
T ss_dssp ---C----TTTHHHHHHHTTCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTT-T
T ss_pred HcCC----HHHHHHHHHHhhhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHH-H
Confidence 7777 8888888877633333356777888888888888877 4689999999999999999999887765 3
Q ss_pred hcCCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCchHHHHHHHHHHHH--ccCHHHHHHHHHHHhccCC-----C
Q 009278 417 RRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFF--LKEYDKALETYQEGLKHDP-----Q 489 (538)
Q Consensus 417 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~--~g~~~~A~~~~~~al~~~p-----~ 489 (538)
..+|+ -...++.+|.+.|++++|+.++++++.+++.....+..+|.+|.+ .++..+.++.|...+.+.| +
T Consensus 204 ~~~ad---~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~ 280 (449)
T 1b89_A 204 VVHAD---ELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAE 280 (449)
T ss_dssp TTCHH---HHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHH
T ss_pred HhCHh---hHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 34444 355688899999999999999999999999999999999998875 6889999999999999999 9
Q ss_pred CHHHHHHHHHHHHHhhhhccCC
Q 009278 490 NQELLDGVRRCVQQINKAGRGE 511 (538)
Q Consensus 490 ~~~~~~~l~~~~~~~~~~~~a~ 511 (538)
+...|..+..++...++++.|.
T Consensus 281 ~~~~w~e~~~ly~~~~e~d~A~ 302 (449)
T 1b89_A 281 QAHLWAELVFLYDKYEEYDNAI 302 (449)
T ss_dssp TTTCHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhhchHHHHH
Confidence 9999999999999999998776
No 100
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.79 E-value=2.6e-18 Score=154.94 Aligned_cols=231 Identities=18% Similarity=0.174 Sum_probs=180.9
Q ss_pred CCCCccccHHHHHHH--------HhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhh--------CCCCHHHHHHHHHH
Q 009278 230 EPEPMELTEEEKEAK--------ERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALEL--------DDEDISYLTNRAAV 293 (538)
Q Consensus 230 ~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~ 293 (538)
+....++......+. ..+..+.++..+|.++...|++++|+.+|+++++. .|....++..+|.+
T Consensus 15 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~ 94 (283)
T 3edt_B 15 VPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVL 94 (283)
T ss_dssp SCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHH
Confidence 344555555555554 34788999999999999999999999999999987 36667899999999
Q ss_pred HHHhCCHHHHHHHHHHHHHcc-----ccchhhHHHHHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCChhHHHhh
Q 009278 294 YLEMGKYEECIKDCDKAVERG-----RELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKL 368 (538)
Q Consensus 294 ~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 368 (538)
+...|++++|+.++++++... ++++ ....++..+|.++...++ +++|+.++++++...
T Consensus 95 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~----~~~~~~~~la~~~~~~g~----~~~A~~~~~~al~~~--------- 157 (283)
T 3edt_B 95 YGKRGKYKEAEPLCKRALEIREKVLGKFHP----DVAKQLNNLALLCQNQGK----AEEVEYYYRRALEIY--------- 157 (283)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHHHTTTC----HHHHHHHHHHHHHHH---------
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHcCCCCh----HHHHHHHHHHHHHHHcCC----HHHHHHHHHHHHHHH---------
Confidence 999999999999999999874 2222 126889999999999999 999999999999831
Q ss_pred hhHHHHHHHHHHHH-HcCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhc---------CCCCchhHhHHHHHHHHhCC
Q 009278 369 NEAEKAKKELEQQE-IFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRR---------NPKDPRTYSNRAACYTKLGA 438 (538)
Q Consensus 369 ~~~~~a~~~~~~~~-~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~---------~~~~~~~~~~la~~~~~~~~ 438 (538)
.+.. ...|....++..+|.++...|++++|+.+|+++++. .+.....+..++..+...+.
T Consensus 158 ----------~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (283)
T 3edt_B 158 ----------ATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDK 227 (283)
T ss_dssp ----------HHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCC
T ss_pred ----------HHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCc
Confidence 0000 015667788999999999999999999999999976 45556778888877776665
Q ss_pred chhHH------HHHHHHHhcCCCchHHHHHHHHHHHHccCHHHHHHHHHHHhccC
Q 009278 439 MPEGL------KDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHD 487 (538)
Q Consensus 439 ~~~A~------~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 487 (538)
...+. ..++......|..+.++..+|.++..+|++++|+.+|+++++..
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 228 RRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp CCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 44443 33333333456778899999999999999999999999998763
No 101
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.79 E-value=1.8e-18 Score=143.51 Aligned_cols=165 Identities=11% Similarity=0.003 Sum_probs=128.7
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHHHHH
Q 009278 249 KALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARAL 328 (538)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (538)
....++.+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++...| ++...
T Consensus 5 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~------- 76 (176)
T 2r5s_A 5 PDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYK------- 76 (176)
T ss_dssp -CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHH-------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHH-------
Confidence 3445788899999999999999999999999999999999999999999999999999999999988 53222
Q ss_pred HHhHHHH-HHhhhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcCChHH
Q 009278 329 TRKGTAL-VKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPE 407 (538)
Q Consensus 329 ~~~~~~~-~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 407 (538)
...+.+. ..... ..+|+..+++++. .+|+++.+++.+|.++...|++++
T Consensus 77 ~~~~~~~~~~~~~----~~~a~~~~~~al~--------------------------~~P~~~~~~~~la~~~~~~g~~~~ 126 (176)
T 2r5s_A 77 SLIAKLELHQQAA----ESPELKRLEQELA--------------------------ANPDNFELACELAVQYNQVGRDEE 126 (176)
T ss_dssp HHHHHHHHHHHHT----SCHHHHHHHHHHH--------------------------HSTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHhhcc----cchHHHHHHHHHH--------------------------hCCCCHHHHHHHHHHHHHcccHHH
Confidence 1122211 11112 3345666666666 778888888888888888888888
Q ss_pred HHHHHHHHHhcCCCC--chhHhHHHHHHHHhCCchhHHHHHHHHHh
Q 009278 408 AIQHYTESLRRNPKD--PRTYSNRAACYTKLGAMPEGLKDADKCIE 451 (538)
Q Consensus 408 A~~~~~~al~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~al~ 451 (538)
|+..|+++++.+|+. +.++..+|.++..+|+.++|+..|++++.
T Consensus 127 A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 127 ALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 888888888888765 45788888888888888888888887764
No 102
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.79 E-value=4.8e-17 Score=145.83 Aligned_cols=200 Identities=6% Similarity=-0.071 Sum_probs=144.1
Q ss_pred cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh-C-CHHHHHHHHHHHHHccccchhhHHHHHHHHHHhHHHHHHhhhcc
Q 009278 265 EFEKAIEHYSSALELDDEDISYLTNRAAVYLEM-G-KYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCS 342 (538)
Q Consensus 265 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-~-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (538)
.+++++.++..++..+|.+..+|..++.++... + ++++++.++.++++.+|.+ ..+|...+.+....+.
T Consensus 104 ~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkN-------y~AW~~R~wvl~~l~~-- 174 (349)
T 3q7a_A 104 SLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKN-------YHTWAYLHWLYSHFST-- 174 (349)
T ss_dssp CHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTC-------HHHHHHHHHHHHHHHH--
T ss_pred hHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHhcc--
Confidence 356666666666666666666666666666665 5 6666666666666666666 3444444444444444
Q ss_pred cChh--------HHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcCC-------hHH
Q 009278 343 KDYE--------PAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQK-------YPE 407 (538)
Q Consensus 343 ~~~~--------~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-------~~~ 407 (538)
++ ++++++.+++. .+|.+..+|..++.++...++ +++
T Consensus 175 --~~~~~~~~~~eELe~~~k~I~--------------------------~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~e 226 (349)
T 3q7a_A 175 --LGRISEAQWGSELDWCNEMLR--------------------------VDGRNNSAWGWRWYLRVSRPGAETSSRSLQD 226 (349)
T ss_dssp --TTCCCHHHHHHHHHHHHHHHH--------------------------HCTTCHHHHHHHHHHHTTSTTCCCCHHHHHH
T ss_pred --ccccchhhHHHHHHHHHHHHH--------------------------hCCCCHHHHHHHHHHHHhccccccchHHHHH
Confidence 44 66666666666 899999999999999999987 799
Q ss_pred HHHHHHHHHhcCCCCchhHhHHHHHHHHhCCc--------------------hhHHHHHHHHHhcC------CCchHHHH
Q 009278 408 AIQHYTESLRRNPKDPRTYSNRAACYTKLGAM--------------------PEGLKDADKCIELD------PTFSKGYT 461 (538)
Q Consensus 408 A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~--------------------~~A~~~~~~al~~~------p~~~~~~~ 461 (538)
+++++.+++..+|++..+|+.+..++...|+. .+-...+...+... +.++.++.
T Consensus 227 ELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~ 306 (349)
T 3q7a_A 227 ELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALE 306 (349)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHH
Confidence 99999999999999999999999999888775 22222222222222 46788999
Q ss_pred HHHHHHHHccCHHHHHHHHHHHh-ccCCCCHHHHHHHHHHH
Q 009278 462 RKGAIQFFLKEYDKALETYQEGL-KHDPQNQELLDGVRRCV 501 (538)
Q Consensus 462 ~l~~~~~~~g~~~~A~~~~~~al-~~~p~~~~~~~~l~~~~ 501 (538)
.++.+|...|+.++|.+.++... +.+|-....|...+..+
T Consensus 307 ~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~~~~ 347 (349)
T 3q7a_A 307 YLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRRREC 347 (349)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHHHhh
Confidence 99999999999999999999987 78998888887766543
No 103
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.79 E-value=7.8e-16 Score=152.37 Aligned_cols=441 Identities=9% Similarity=-0.047 Sum_probs=278.9
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHHHhccCCcchHHHHHHHHHHHhcCC---HHHHHHHHHHHhccCC--CchHHHHHHH
Q 009278 3 DEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHN---YADALADAKKTVELKP--DWSKGYSRLG 77 (538)
Q Consensus 3 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p--~~~~~~~~la 77 (538)
+.|..........++++.+...|++++...|.....|...+......|+ ++.+...|++++...| .++..|....
T Consensus 67 ~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~~Yl 146 (679)
T 4e6h_A 67 FLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWLSYI 146 (679)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 4577777888888999999999999999999999999999999999999 9999999999999984 5777888877
Q ss_pred HHHhhccCH--------HHHHHHHHhhhh---c-CCCcHHHHhhHHHHHHHHh---------hcccCCCCCCCCcccccc
Q 009278 78 AAHLGLQDY--------IEAVNSYKKGLD---I-DPNNEALKSGLADAKAAAS---------ASFRSRSPPADNPFGSAF 136 (538)
Q Consensus 78 ~~~~~~~~~--------~~A~~~~~~al~---~-~p~~~~~~~~l~~~~~~~~---------~~~~~~~~~~~~~~~~~~ 136 (538)
......++. +.....|++|+. . +|....+|........... ..+..+
T Consensus 147 ~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R------------ 214 (679)
T 4e6h_A 147 TYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIR------------ 214 (679)
T ss_dssp HHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHH------------
T ss_pred HHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHH------------
Confidence 766655543 334478888875 3 6767777776665543210 000000
Q ss_pred cCCchhhcccCCCCCCCcccHHHHHHHHHhhhcCCCchhhhhc--hHHHHHHHH---HHHhhhcCCCCCCCccccccc--
Q 009278 137 AGPEMWAKLTADPTTRSYLDQDDFRNMMKDIQRNPNNLNLYLK--DQRVMQALG---VLLNVKFKGPTGGDDVEMQDE-- 209 (538)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-- 209 (538)
..+......|.......-..+..+...+ ++......+. ...+..+.. .+.......... +.....
T Consensus 215 ---~iy~raL~iP~~~~~~~w~~Y~~fe~~~--~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~---~p~~~~~~ 286 (679)
T 4e6h_A 215 ---KLYKTLLCQPMDCLESMWQRYTQWEQDV--NQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRN---LPITLNQA 286 (679)
T ss_dssp ---HHHHHHTTSCCSSHHHHHHHHHHHHHHH--CTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCC---CCSSSTTC
T ss_pred ---HHHHHHHhCccHHHHHHHHHHHHHHHhc--CcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhc---cccccccc
Confidence 0001111111110000001112222221 1111111110 011111111 111111000000 000000
Q ss_pred cCCCCCCCc--c---------ccccCCCCCCCCCC-----ccccHHHHHHHHhHHHHHHHHHHHHHHHhcccHHHHH-HH
Q 009278 210 DAPKGPETS--K---------EETRKPESEPEPEP-----MELTEEEKEAKERKEKALKEKEAGNAAYKKKEFEKAI-EH 272 (538)
Q Consensus 210 ~~~~~~~~~--~---------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~-~~ 272 (538)
.....|... . +..-.......... ........++...|..+..|+..+..+...|+.++|. ..
T Consensus 287 ~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~i 366 (679)
T 4e6h_A 287 TESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKY 366 (679)
T ss_dssp CTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHH
T ss_pred hhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 000001000 0 00000000000000 0112355677788888999999999999999999997 99
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc-----------ccchh----hHHHHHHHHHHhHHHHHH
Q 009278 273 YSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERG-----------RELRS----DFKMIARALTRKGTALVK 337 (538)
Q Consensus 273 ~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-----------~~~~~----~~~~~~~~~~~~~~~~~~ 337 (538)
|++++..+|.+...|..++.+....|++++|..+|++++... |.+.. .......+|.........
T Consensus 367 l~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR 446 (679)
T 4e6h_A 367 LKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKR 446 (679)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999853 21100 001123455555555555
Q ss_pred hhhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHc-CCCchHHHHHHHHHHHhcCC-hHHHHHHHHHH
Q 009278 338 MAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIF-DPKIADEEREKGNEFFKQQK-YPEAIQHYTES 415 (538)
Q Consensus 338 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~-~~~A~~~~~~a 415 (538)
.+. .+.|...|.++++ . .+....+|...|.+....++ ++.|..+|+++
T Consensus 447 ~~~----l~~AR~vf~~A~~--------------------------~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~ 496 (679)
T 4e6h_A 447 IQG----LAASRKIFGKCRR--------------------------LKKLVTPDIYLENAYIEYHISKDTKTACKVLELG 496 (679)
T ss_dssp HHC----HHHHHHHHHHHHH--------------------------TGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHH
T ss_pred cCC----HHHHHHHHHHHHH--------------------------hcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 555 7778888877776 3 33345667777777666654 88999999999
Q ss_pred HhcCCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhcCC---CchHHHHHHHHHHHHccCHHHHHHHHHHHhccCCCCHH
Q 009278 416 LRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDP---TFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQE 492 (538)
Q Consensus 416 l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 492 (538)
++..|+++..|...+......|+.+.|..+|++++...| .....|......-...|+.+.+...++++.+..|+++.
T Consensus 497 Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~ 576 (679)
T 4e6h_A 497 LKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNK 576 (679)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCH
T ss_pred HHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcH
Confidence 999998888888888888888999999999999998877 35567777777777889999999999999999988754
Q ss_pred H
Q 009278 493 L 493 (538)
Q Consensus 493 ~ 493 (538)
+
T Consensus 577 ~ 577 (679)
T 4e6h_A 577 L 577 (679)
T ss_dssp H
T ss_pred H
Confidence 4
No 104
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.78 E-value=7.3e-19 Score=140.60 Aligned_cols=134 Identities=9% Similarity=0.018 Sum_probs=121.3
Q ss_pred HHHHHHHcCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCc
Q 009278 377 ELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTF 456 (538)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 456 (538)
.+++++..+|.+...++.+|.++...|++++|+..|++++..+|.++.+|+.+|.++...|++++|+..|++++.++|++
T Consensus 9 ~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 88 (148)
T 2vgx_A 9 TIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXE 88 (148)
T ss_dssp SHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred hHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence 35556668999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhccC
Q 009278 457 SKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDGVRRCVQQINKAGRG 510 (538)
Q Consensus 457 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a 510 (538)
+.+++.+|.++..+|++++|+.+|+++++++|+++........+...+......
T Consensus 89 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~l~~~ 142 (148)
T 2vgx_A 89 PRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSSMLEAIKLK 142 (148)
T ss_dssp THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHC---
T ss_pred chHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHHHHHHHHHHHHhH
Confidence 999999999999999999999999999999999988776666666666555443
No 105
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.78 E-value=1.4e-18 Score=144.18 Aligned_cols=167 Identities=13% Similarity=0.063 Sum_probs=115.2
Q ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCC
Q 009278 281 DEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHR 360 (538)
Q Consensus 281 p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 360 (538)
|.....++.+|..+...|++++|+..|+++++.+|++ ..++..+|.++...|+ +++|+..+++++.
T Consensus 3 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~-------~~a~~~la~~~~~~g~----~~~A~~~~~~a~~--- 68 (176)
T 2r5s_A 3 ASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSR-------GDVKLAKADCLLETKQ----FELAQELLATIPL--- 68 (176)
T ss_dssp ---CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTS-------HHHHHHHHHHHHHTTC----HHHHHHHHTTCCG---
T ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc-------HHHHHHHHHHHHHCCC----HHHHHHHHHHhhh---
Confidence 4444566777778888888888888888888877777 5556666666666666 7777777777776
Q ss_pred ChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHH-hcCChHHHHHHHHHHHhcCCCCchhHhHHHHHHHHhCCc
Q 009278 361 NPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFF-KQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAM 439 (538)
Q Consensus 361 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~ 439 (538)
.+| ++..+..++.+.. ..+...+|+..|+++++.+|+++.+++.+|.++...|++
T Consensus 69 -----------------------~~p-~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~ 124 (176)
T 2r5s_A 69 -----------------------EYQ-DNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRD 124 (176)
T ss_dssp -----------------------GGC-CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCH
T ss_pred -----------------------ccC-ChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccH
Confidence 455 4544444443322 223344567777777777777777777777777777777
Q ss_pred hhHHHHHHHHHhcCCCc--hHHHHHHHHHHHHccCHHHHHHHHHHHhc
Q 009278 440 PEGLKDADKCIELDPTF--SKGYTRKGAIQFFLKEYDKALETYQEGLK 485 (538)
Q Consensus 440 ~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 485 (538)
++|+..|+++++.+|+. +.++..+|.++..+|+.++|+..|++++.
T Consensus 125 ~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 125 EEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 77777777777777764 45777777777777777777777777653
No 106
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.77 E-value=9.9e-18 Score=152.58 Aligned_cols=165 Identities=15% Similarity=0.085 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCChhHH
Q 009278 286 YLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTL 365 (538)
Q Consensus 286 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 365 (538)
++..+|.+|..+|++++|+.+|++++.+.+.... ....+.++..+|.++.. ++ +++|+.+|++++...+...
T Consensus 78 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~-~~~~a~~~~~lg~~~~~-g~----~~~A~~~~~~Al~~~~~~~-- 149 (307)
T 2ifu_A 78 AFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGT-PDTAAMALDRAGKLMEP-LD----LSKAVHLYQQAAAVFENEE-- 149 (307)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTC-HHHHHHHHHHHHHHHTT-TC----HHHHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHc-CC----HHHHHHHHHHHHHHHHhCC--
Confidence 3444445555555555555555555544332211 11224555555655555 55 6666666666655221100
Q ss_pred HhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCc------hhHhHHHHHHHHhCCc
Q 009278 366 KKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDP------RTYSNRAACYTKLGAM 439 (538)
Q Consensus 366 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~------~~~~~la~~~~~~~~~ 439 (538)
..+....++..+|.++...|++++|+.+|++++.+.|.+. .++..+|.++..+|++
T Consensus 150 ------------------~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~ 211 (307)
T 2ifu_A 150 ------------------RLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADY 211 (307)
T ss_dssp ------------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ------------------ChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCH
Confidence 0001245667777778888888888888888877655432 3667777788888888
Q ss_pred hhHHHHHHHHHhcCCCchH-----HHHHHHHHHHHccCHHHHHH
Q 009278 440 PEGLKDADKCIELDPTFSK-----GYTRKGAIQFFLKEYDKALE 478 (538)
Q Consensus 440 ~~A~~~~~~al~~~p~~~~-----~~~~l~~~~~~~g~~~~A~~ 478 (538)
++|+.+|++++ ++|.... ....++..+ ..|+.+.+..
T Consensus 212 ~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 212 VAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 88888888888 7776543 233444443 4555544433
No 107
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.77 E-value=4.7e-17 Score=145.89 Aligned_cols=240 Identities=12% Similarity=0.011 Sum_probs=198.2
Q ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHccccchhhHHHHH
Q 009278 247 KEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMG-KYEECIKDCDKAVERGRELRSDFKMIA 325 (538)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~~ 325 (538)
++...++..+..+....+..++|+.++.+++.++|++..+|..++.++...| .+++++..+++++..+|++ .
T Consensus 51 ~~y~~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKn-------y 123 (349)
T 3q7a_A 51 EEYKDAMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKS-------Y 123 (349)
T ss_dssp HHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCC-------H
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCc-------H
Confidence 4566667777777777788889999999999999999999999999999999 5999999999999999999 6
Q ss_pred HHHHHhHHHHHHh-h-hcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcC
Q 009278 326 RALTRKGTALVKM-A-KCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQ 403 (538)
Q Consensus 326 ~~~~~~~~~~~~~-~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 403 (538)
.+|...+.++..+ + . +++++..+.+++. .+|.+..+|...+.++...|
T Consensus 124 ~aW~hR~wlL~~l~~~~----~~~EL~~~~k~L~--------------------------~dpkNy~AW~~R~wvl~~l~ 173 (349)
T 3q7a_A 124 QVWHHRLLLLDRISPQD----PVSEIEYIHGSLL--------------------------PDPKNYHTWAYLHWLYSHFS 173 (349)
T ss_dssp HHHHHHHHHHHHHCCSC----CHHHHHHHHHHTS--------------------------SCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCC----hHHHHHHHHHHHH--------------------------hCCCCHHHHHHHHHHHHHhc
Confidence 6677777766666 5 5 8888888888888 89999999999999999999
Q ss_pred ChH--------HHHHHHHHHHhcCCCCchhHhHHHHHHHHhCC-------chhHHHHHHHHHhcCCCchHHHHHHHHHHH
Q 009278 404 KYP--------EAIQHYTESLRRNPKDPRTYSNRAACYTKLGA-------MPEGLKDADKCIELDPTFSKGYTRKGAIQF 468 (538)
Q Consensus 404 ~~~--------~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~-------~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 468 (538)
.++ ++++++.++++.+|.+..+|..++.++...++ ++++++++.+++..+|++..+|+.+..++.
T Consensus 174 ~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~ 253 (349)
T 3q7a_A 174 TLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLK 253 (349)
T ss_dssp HTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred cccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 888 99999999999999999999999999999987 689999999999999999999999999998
Q ss_pred HccCH--------------------HHHHHHHHHHhccC------CCCHHHHHHHHHHHHHhhhhccCCCChHHHHHHHH
Q 009278 469 FLKEY--------------------DKALETYQEGLKHD------PQNQELLDGVRRCVQQINKAGRGELSPEELKERQA 522 (538)
Q Consensus 469 ~~g~~--------------------~~A~~~~~~al~~~------p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 522 (538)
..|+. .+-.......+... +.++.++..++.++...|+..+|. +.+.
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~-------~~~~ 326 (349)
T 3q7a_A 254 HFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAA-------KVFE 326 (349)
T ss_dssp HTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHH-------HHHH
T ss_pred hcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHH-------HHHH
Confidence 87764 22222222333222 578899999999999887665444 6666
Q ss_pred hcc-C-Cchh
Q 009278 523 KGM-Q-DPKF 530 (538)
Q Consensus 523 ~~~-~-~p~~ 530 (538)
... . ||-=
T Consensus 327 ~l~~~~dpir 336 (349)
T 3q7a_A 327 KLSSEYDQMR 336 (349)
T ss_dssp HHHHTTCGGG
T ss_pred HHHhhhChHH
Confidence 554 3 6643
No 108
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.76 E-value=2.1e-17 Score=148.58 Aligned_cols=168 Identities=11% Similarity=0.082 Sum_probs=119.3
Q ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHHH
Q 009278 247 KEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIAR 326 (538)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 326 (538)
|.....++.+|..+...|++++|+..|++++..+|+++.+++.+|.++...|++++|+..+++++..+|+. ..
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~-------~~ 186 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDT-------RY 186 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSH-------HH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcch-------HH
Confidence 55667778888888888888888888888888888888888888888888888888888888888777743 22
Q ss_pred HHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcCChH
Q 009278 327 ALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYP 406 (538)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 406 (538)
.....+..+...+. .++|+..+++++. .+|+++.+++.+|.++...|+++
T Consensus 187 ~~~~~~~~l~~~~~----~~~a~~~l~~al~--------------------------~~P~~~~~~~~la~~l~~~g~~~ 236 (287)
T 3qou_A 187 QGLVAQIELLXQAA----DTPEIQQLQQQVA--------------------------ENPEDAALATQLALQLHQVGRNE 236 (287)
T ss_dssp HHHHHHHHHHHHHT----SCHHHHHHHHHHH--------------------------HCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHhhcc----cCccHHHHHHHHh--------------------------cCCccHHHHHHHHHHHHHcccHH
Confidence 33333444444444 6666666666666 66667777777777777777777
Q ss_pred HHHHHHHHHHhcCCCC--chhHhHHHHHHHHhCCchhHHHHHHHHHh
Q 009278 407 EAIQHYTESLRRNPKD--PRTYSNRAACYTKLGAMPEGLKDADKCIE 451 (538)
Q Consensus 407 ~A~~~~~~al~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~al~ 451 (538)
+|+..|.+++..+|++ ..++..++.++...|+.++|...|++++.
T Consensus 237 ~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 237 EALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 7777777777777666 56666777777777777777766666654
No 109
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.76 E-value=8.2e-18 Score=145.70 Aligned_cols=219 Identities=7% Similarity=-0.013 Sum_probs=183.2
Q ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHH-------HHHHHHhCCHHHHHHHHHHHHHccccchhh
Q 009278 248 EKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNR-------AAVYLEMGKYEECIKDCDKAVERGRELRSD 320 (538)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l-------a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 320 (538)
+....++..|.-+ ..+++..|...|.+++..+|+..++|..+ +.++...++..+++..+.+.+.+.|.....
T Consensus 5 ~~~~~~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a 83 (282)
T 4f3v_A 5 DRLASLFESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNA 83 (282)
T ss_dssp HHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCC
T ss_pred HHHHHHHHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhh
Confidence 3455566777776 68999999999999999999999999999 899999999999999999999988875332
Q ss_pred HHH--------------HHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCC
Q 009278 321 FKM--------------IARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDP 386 (538)
Q Consensus 321 ~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 386 (538)
... ...+....+.++...++ +++|.+.|..++. ..|
T Consensus 84 ~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~----y~eA~~~l~~~~~--------------------------~~p 133 (282)
T 4f3v_A 84 RIAIGGLYGDITYPVTSPLAITMGFAACEAAQGN----YADAMEALEAAPV--------------------------AGS 133 (282)
T ss_dssp EEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTC----HHHHHHHHTSSCC--------------------------TTC
T ss_pred hhccCCcccccccccCCHhHHHHHHHHHHHHCCC----HHHHHHHHHHHHh--------------------------cCC
Confidence 221 12445555666777777 8888888877776 678
Q ss_pred CchHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC--chhHhHHHHHHHHhCCchhHHHHHHHHHhcC--CC-chHHHH
Q 009278 387 KIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKD--PRTYSNRAACYTKLGAMPEGLKDADKCIELD--PT-FSKGYT 461 (538)
Q Consensus 387 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~-~~~~~~ 461 (538)
... ..+.+|.+++..++|++|+..|+.+....+.. ..+++.+|.++..+|++++|+.+|++++.-. |. .+.+++
T Consensus 134 ~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~ 212 (282)
T 4f3v_A 134 EHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAW 212 (282)
T ss_dssp HHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHH
T ss_pred chH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHH
Confidence 778 99999999999999999999999887653221 3589999999999999999999999998654 55 677999
Q ss_pred HHHHHHHHccCHHHHHHHHHHHhccCCCCHHHHHHHHH
Q 009278 462 RKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDGVRR 499 (538)
Q Consensus 462 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 499 (538)
.+|.++..+|+.++|...|++++..+|+ ..+...|..
T Consensus 213 ~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~ 249 (282)
T 4f3v_A 213 YLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALKD 249 (282)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhC
Confidence 9999999999999999999999999999 877766643
No 110
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.76 E-value=2.1e-17 Score=148.64 Aligned_cols=169 Identities=15% Similarity=0.075 Sum_probs=148.7
Q ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcC
Q 009278 280 DDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEH 359 (538)
Q Consensus 280 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 359 (538)
.|.+...++.+|..+...|++++|+..|++++..+|++ ..++..+|.++...|+ +++|+..+++++.
T Consensus 113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~-------~~a~~~la~~~~~~g~----~~~A~~~l~~~~~-- 179 (287)
T 3qou_A 113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQN-------GEIGLLLAETLIALNR----SEDAEAVLXTIPL-- 179 (287)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSC-------HHHHHHHHHHHHHTTC----HHHHHHHHTTSCG--
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcc-------hhHHHHHHHHHHHCCC----HHHHHHHHHhCch--
Confidence 38888999999999999999999999999999999988 5677777777777777 9999999988888
Q ss_pred CChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHhHHHHHHHHhCCc
Q 009278 360 RNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAM 439 (538)
Q Consensus 360 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~ 439 (538)
.+|+........+..+...++.++|+..|++++..+|+++.+++.+|.++...|++
T Consensus 180 ------------------------~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~ 235 (287)
T 3qou_A 180 ------------------------QDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRN 235 (287)
T ss_dssp ------------------------GGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred ------------------------hhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccH
Confidence 66766666777777788888899999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhcCCCc--hHHHHHHHHHHHHccCHHHHHHHHHHHhc
Q 009278 440 PEGLKDADKCIELDPTF--SKGYTRKGAIQFFLKEYDKALETYQEGLK 485 (538)
Q Consensus 440 ~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 485 (538)
++|+..|.++++.+|++ ..++..+|.++...|+.++|...|++++.
T Consensus 236 ~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 236 EEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 99999999999999988 88899999999999999999999998874
No 111
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.76 E-value=2.7e-18 Score=136.76 Aligned_cols=131 Identities=12% Similarity=0.089 Sum_probs=119.7
Q ss_pred HHHHHHHcCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCc
Q 009278 377 ELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTF 456 (538)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 456 (538)
.+.+++..+|++...++.+|.+++..|++++|+..|++++..+|.++.+|+.+|.++...|++++|+.+|++++.++|++
T Consensus 6 ~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 85 (142)
T 2xcb_A 6 TLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINE 85 (142)
T ss_dssp ---CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred hHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence 45555668999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhh
Q 009278 457 SKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDGVRRCVQQINKA 507 (538)
Q Consensus 457 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 507 (538)
+.+++.+|.++..+|++++|+.+|+++++++|+++........+...++..
T Consensus 86 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~l 136 (142)
T 2xcb_A 86 PRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLEAV 136 (142)
T ss_dssp THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988877777776665544
No 112
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.75 E-value=1.1e-16 Score=136.81 Aligned_cols=190 Identities=15% Similarity=0.056 Sum_probs=161.3
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHHHHHHHhHHHHHHhhhcccChh
Q 009278 267 EKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYE 346 (538)
Q Consensus 267 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (538)
.+|+.+|+++.+. .++.+++.+|.+|...+++++|+.+|+++++.. + +.+++.+|.++.. +....+++
T Consensus 3 ~eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g--~-------~~a~~~lg~~y~~-~g~~~~~~ 70 (212)
T 3rjv_A 3 TEPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG--D-------GDALALLAQLKIR-NPQQADYP 70 (212)
T ss_dssp -CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT--C-------HHHHHHHHHHTTS-STTSCCHH
T ss_pred chHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC--C-------HHHHHHHHHHHHc-CCCCCCHH
Confidence 3578889998876 789999999999999999999999999998753 3 5778888888877 52223499
Q ss_pred HHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCC--
Q 009278 347 PAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFK----QQKYPEAIQHYTESLRRNP-- 420 (538)
Q Consensus 347 ~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~~-- 420 (538)
+|+.+|+++.. +.++.+++.+|.+|.. .+++++|+.+|+++++..|
T Consensus 71 ~A~~~~~~A~~----------------------------~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~ 122 (212)
T 3rjv_A 71 QARQLAEKAVE----------------------------AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESD 122 (212)
T ss_dssp HHHHHHHHHHH----------------------------TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSH
T ss_pred HHHHHHHHHHH----------------------------CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCc
Confidence 99999999866 4678899999999998 8999999999999999988
Q ss_pred CCchhHhHHHHHHHH----hCCchhHHHHHHHHHhcCCCchHHHHHHHHHHHHc-c-----CHHHHHHHHHHHhccCCCC
Q 009278 421 KDPRTYSNRAACYTK----LGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFL-K-----EYDKALETYQEGLKHDPQN 490 (538)
Q Consensus 421 ~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~al~~~p~~ 490 (538)
.++.+++.+|.+|.. .+++++|+.+|+++++. |.++.+++++|.+|... | ++++|+.+|+++.+.. +
T Consensus 123 ~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g--~ 199 (212)
T 3rjv_A 123 AAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG--F 199 (212)
T ss_dssp HHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT--C
T ss_pred chHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC--C
Confidence 358999999999999 88999999999999998 77788999999999874 3 8999999999999874 4
Q ss_pred HHHHHHHHH
Q 009278 491 QELLDGVRR 499 (538)
Q Consensus 491 ~~~~~~l~~ 499 (538)
+.+...++.
T Consensus 200 ~~A~~~l~~ 208 (212)
T 3rjv_A 200 DTGCEEFDR 208 (212)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555543
No 113
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.75 E-value=3e-17 Score=163.30 Aligned_cols=165 Identities=13% Similarity=0.065 Sum_probs=123.8
Q ss_pred cccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHHHHHHHhHHHHHHhhhcc
Q 009278 263 KKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCS 342 (538)
Q Consensus 263 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (538)
.|++++|+..|+++++.+|++..++..+|.++...|++++|+..++++++.+|++ ..++..+|.++...++
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~lg~~~~~~g~-- 72 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGH-------PEAVARLGRVRWTQQR-- 72 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTC-------HHHHHHHHHHHHHTTC--
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHCCC--
Confidence 4788899999999999999999999999999999999999999999999988887 5667777777777777
Q ss_pred cChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 009278 343 KDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKD 422 (538)
Q Consensus 343 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~ 422 (538)
+++|+..|++++. .+|+++.++..+|.++...|++++|+..|+++++.+|++
T Consensus 73 --~~~A~~~~~~al~--------------------------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 124 (568)
T 2vsy_A 73 --HAEAAVLLQQASD--------------------------AAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEE 124 (568)
T ss_dssp --HHHHHHHHHHHHH--------------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred --HHHHHHHHHHHHh--------------------------cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 8888888888888 778888888888888888888888888888888888888
Q ss_pred chhHhHHHHHHHHh---CCchhHHHHHHHHHhcCCCchHHHHHHH
Q 009278 423 PRTYSNRAACYTKL---GAMPEGLKDADKCIELDPTFSKGYTRKG 464 (538)
Q Consensus 423 ~~~~~~la~~~~~~---~~~~~A~~~~~~al~~~p~~~~~~~~l~ 464 (538)
+.++..+|.++..+ |++++|+..++++++.+|.+...+..++
T Consensus 125 ~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 125 PYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLS 169 (568)
T ss_dssp HHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCCSCHHHHTT
T ss_pred HHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcccChHHHhC
Confidence 88888888888888 8888888888888888888777766655
No 114
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.75 E-value=8.9e-18 Score=133.69 Aligned_cols=103 Identities=13% Similarity=0.047 Sum_probs=100.6
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHHHhccCCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHHHHHh
Q 009278 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHL 81 (538)
Q Consensus 2 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 81 (538)
+++++.+|..++..|+|++|+..|++++..+|+++.+|+.+|.++..+|++++|+..|++++.++|+++.+|+.+|.+|.
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCHHHHHHHHHhhhhcCCCcH
Q 009278 82 GLQDYIEAVNSYKKGLDIDPNNE 104 (538)
Q Consensus 82 ~~~~~~~A~~~~~~al~~~p~~~ 104 (538)
.+|++++|+..|++++++.|+.+
T Consensus 116 ~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 116 RLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCHH
Confidence 99999999999999999999876
No 115
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.75 E-value=6.4e-18 Score=153.82 Aligned_cols=179 Identities=13% Similarity=0.112 Sum_probs=148.9
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCChhHHH
Q 009278 287 LTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLK 366 (538)
Q Consensus 287 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 366 (538)
+...|.+|...|++++|+..|.+++.+.+.... ....+.++..+|.++...++ +++|+.+|++++...+.
T Consensus 39 ~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~a~~~~~lg~~~~~~g~----~~~A~~~~~~Al~l~~~----- 108 (307)
T 2ifu_A 39 YAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRS-LFHAAKAFEQAGMMLKDLQR----MPEAVQYIEKASVMYVE----- 108 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTC----GGGGHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHhCCC----HHHHHHHHHHHHHHHHH-----
Confidence 344578899999999999999999998876533 33447889999999999999 99999999999984321
Q ss_pred hhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC------chhHhHHHHHHHHhCCch
Q 009278 367 KLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKD------PRTYSNRAACYTKLGAMP 440 (538)
Q Consensus 367 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~~~~~ 440 (538)
.++. +....++..+|.+|.. |++++|+.+|++++.+.|.. ..++.++|.++..+|+++
T Consensus 109 -~g~~--------------~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~ 172 (307)
T 2ifu_A 109 -NGTP--------------DTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFD 172 (307)
T ss_dssp -TTCH--------------HHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred -cCCH--------------HHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHH
Confidence 1111 1234678899999999 99999999999999987643 468899999999999999
Q ss_pred hHHHHHHHHHhcCCCc------hHHHHHHHHHHHHccCHHHHHHHHHHHhccCCCCHH
Q 009278 441 EGLKDADKCIELDPTF------SKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQE 492 (538)
Q Consensus 441 ~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 492 (538)
+|+.+|++++.+.|.+ ..++..+|.++..+|++++|+.+|++++ ++|+...
T Consensus 173 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~ 229 (307)
T 2ifu_A 173 EAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSG 229 (307)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTT
T ss_pred HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCC
Confidence 9999999999986544 3478889999999999999999999999 9997643
No 116
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.74 E-value=2.6e-17 Score=163.68 Aligned_cols=165 Identities=13% Similarity=0.033 Sum_probs=137.6
Q ss_pred hCCHHHHHHHHHHHHHccccchhhHHHHHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHH
Q 009278 297 MGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKK 376 (538)
Q Consensus 297 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 376 (538)
.|++++|+..++++++.+|++ ..++..+|.++...++ +++|+..|++++.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~-------~~~~~~lg~~~~~~g~----~~~A~~~~~~al~------------------- 51 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQD-------FVAWLMLADAELGMGD----TTAGEMAVQRGLA------------------- 51 (568)
T ss_dssp -------------------CC-------HHHHHHHHHHHHHHTC----HHHHHHHHHHHHT-------------------
T ss_pred CccHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCC----HHHHHHHHHHHHH-------------------
Confidence 478999999999999999998 6778888888888888 9999999999999
Q ss_pred HHHHHHHcCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCc
Q 009278 377 ELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTF 456 (538)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 456 (538)
.+|+++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|++
T Consensus 52 -------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 124 (568)
T 2vsy_A 52 -------LHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEE 124 (568)
T ss_dssp -------TSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred -------hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 8899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHc---cCHHHHHHHHHHHhccCCCCHHHHHHHH
Q 009278 457 SKGYTRKGAIQFFL---KEYDKALETYQEGLKHDPQNQELLDGVR 498 (538)
Q Consensus 457 ~~~~~~l~~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~l~ 498 (538)
+.++..+|.++..+ |++++|...|+++++.+|++...+..++
T Consensus 125 ~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 125 PYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLS 169 (568)
T ss_dssp HHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCCSCHHHHTT
T ss_pred HHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcccChHHHhC
Confidence 99999999999999 9999999999999999999877665554
No 117
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.74 E-value=2.9e-17 Score=127.91 Aligned_cols=115 Identities=29% Similarity=0.510 Sum_probs=110.5
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHHHhccCCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHHHHHh
Q 009278 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHL 81 (538)
Q Consensus 2 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 81 (538)
++.++.+|..++..|+|++|+..|++++..+|+++.+++.+|.++..+|++++|+..|++++.++|+++.+++.+|.++.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCHHHHHHHHHhhhhcC------CCcHHHHhhHHHHHHH
Q 009278 82 GLQDYIEAVNSYKKGLDID------PNNEALKSGLADAKAA 116 (538)
Q Consensus 82 ~~~~~~~A~~~~~~al~~~------p~~~~~~~~l~~~~~~ 116 (538)
.+|++++|+..|+++++++ |++..++..+..+...
T Consensus 84 ~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 84 AVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHh
Confidence 9999999999999999999 9999998888877654
No 118
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.74 E-value=5.6e-18 Score=132.32 Aligned_cols=118 Identities=22% Similarity=0.247 Sum_probs=109.3
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHHHHhccCCc-------chH-----HHHHHHHHHHhcCCHHHHHHHHHHHhcc---
Q 009278 1 MADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPD-------NHV-----LYSNRSAAHASLHNYADALADAKKTVEL--- 65 (538)
Q Consensus 1 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-------~~~-----~~~~la~~~~~~g~~~~A~~~~~~al~~--- 65 (538)
+|+.++.+|..++..|+|++|+..|+++++.+|+ +.. +|.++|.++..+|+|++|+..|++++.+
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~ 89 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 89 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 3678999999999999999999999999999998 433 9999999999999999999999999999
Q ss_pred ----CCCchHHH----HHHHHHHhhccCHHHHHHHHHhhhhcCCCcHHHHhhHHHHHHHHh
Q 009278 66 ----KPDWSKGY----SRLGAAHLGLQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAAS 118 (538)
Q Consensus 66 ----~p~~~~~~----~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 118 (538)
+|+++.+| +++|.++..+|++++|+.+|+++++++|++......+..+.....
T Consensus 90 ~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~~~ 150 (159)
T 2hr2_A 90 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVAI 150 (159)
T ss_dssp HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHHH
T ss_pred cccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 99999999 999999999999999999999999999999888777777665553
No 119
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.74 E-value=3e-17 Score=127.82 Aligned_cols=119 Identities=39% Similarity=0.643 Sum_probs=113.4
Q ss_pred CCchHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCchHHHHHHHH
Q 009278 386 PKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGA 465 (538)
Q Consensus 386 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 465 (538)
|..+..+..+|..++..|++++|+..|+++++.+|.++.++.++|.++..+|++++|+..++++++++|+++.+++.+|.
T Consensus 1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT 80 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHccCHHHHHHHHHHHhccC------CCCHHHHHHHHHHHHHh
Q 009278 466 IQFFLKEYDKALETYQEGLKHD------PQNQELLDGVRRCVQQI 504 (538)
Q Consensus 466 ~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~l~~~~~~~ 504 (538)
++..+|++++|+..|+++++++ |++..++..+..+...+
T Consensus 81 ~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~l 125 (126)
T 3upv_A 81 AQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQR 125 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHC
T ss_pred HHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHhh
Confidence 9999999999999999999999 99999999999887654
No 120
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.73 E-value=2.1e-17 Score=147.95 Aligned_cols=104 Identities=27% Similarity=0.410 Sum_probs=100.5
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHHHhccCCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHHHHHh
Q 009278 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHL 81 (538)
Q Consensus 2 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 81 (538)
++.++.+|..++..|+|++|+..|++++..+|+++.+++++|.++..+|++++|+..+++++.++|+++.+++.+|.++.
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL 83 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCHHHHHHHHHhhhhcCCCcHH
Q 009278 82 GLQDYIEAVNSYKKGLDIDPNNEA 105 (538)
Q Consensus 82 ~~~~~~~A~~~~~~al~~~p~~~~ 105 (538)
.+|++++|+..|+++++++|++..
T Consensus 84 ~~g~~~~A~~~~~~al~l~p~~~~ 107 (281)
T 2c2l_A 84 EMESYDEAIANLQRAYSLAKEQRL 107 (281)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HcCCHHHHHHHHHHHHHhCccchh
Confidence 999999999999999999987643
No 121
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.72 E-value=4.5e-19 Score=163.13 Aligned_cols=204 Identities=14% Similarity=0.163 Sum_probs=160.2
Q ss_pred HHHhcccHHHHHHHHHH----HHhhCCCCHHHHHHHHHHHH------------HhCCHHHHHHHHHHHHHccccchhhHH
Q 009278 259 AAYKKKEFEKAIEHYSS----ALELDDEDISYLTNRAAVYL------------EMGKYEECIKDCDKAVERGRELRSDFK 322 (538)
Q Consensus 259 ~~~~~~~~~~A~~~~~~----al~~~p~~~~~~~~la~~~~------------~~~~~~~A~~~~~~~~~~~~~~~~~~~ 322 (538)
++...+.+++|+..+.. ++.+.|.. ++..+|.... .++++++|+..+++++...|+.
T Consensus 74 ~~~~~~~~e~al~~~~~Ge~~~l~i~p~~--ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~----- 146 (336)
T 1p5q_A 74 NLDLPYGLERAIQRMEKGEHSIVYLKPSY--AFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQ----- 146 (336)
T ss_dssp GGTCCHHHHHHHTTCCTTCEEEEEECTTT--TTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHH-----
T ss_pred ccccchHHHHHHhcCCCCCeEEEEECCcc--ccCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHHHHH-----
Confidence 33345689999999999 88898886 4444443332 4567778888888888777765
Q ss_pred HHHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhc
Q 009278 323 MIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQ 402 (538)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~ 402 (538)
+.++..+|.++...++ +++|+..|++++...|....... .......|....++.++|.++...
T Consensus 147 --a~~~~~~g~~~~~~g~----~~~A~~~y~~Al~~~p~~~~~~~-----------~~~~~~~~~~~~~~~nla~~~~~~ 209 (336)
T 1p5q_A 147 --STIVKERGTVYFKEGK----YKQALLQYKKIVSWLEYESSFSN-----------EEAQKAQALRLASHLNLAMCHLKL 209 (336)
T ss_dssp --HHHHHHHHHHHHHHTC----HHHHHHHHHHHHHHTTTCCCCCS-----------HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred --HHHHHHHHHHHHHCCC----HHHHHHHHHHHHHHhhccccCCh-----------HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 7788888999998888 99999999999994443210000 000011122268899999999999
Q ss_pred CChHHHHHHHHHHHhcCCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCchHHHHHHHHHHHHccCHHHH-HHHHH
Q 009278 403 QKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKA-LETYQ 481 (538)
Q Consensus 403 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A-~~~~~ 481 (538)
|++++|+..|+++++++|+++.+++.+|.+|..+|++++|+..|+++++++|+++.++..+|.++..+|++++| ...|+
T Consensus 210 g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~ 289 (336)
T 1p5q_A 210 QAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYA 289 (336)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998 55677
Q ss_pred HHhcc
Q 009278 482 EGLKH 486 (538)
Q Consensus 482 ~al~~ 486 (538)
+++..
T Consensus 290 ~~~~~ 294 (336)
T 1p5q_A 290 NMFER 294 (336)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76643
No 122
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.72 E-value=2.1e-16 Score=122.63 Aligned_cols=118 Identities=47% Similarity=0.834 Sum_probs=110.0
Q ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHHH
Q 009278 247 KEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIAR 326 (538)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 326 (538)
++.+.++..+|..++..|+|++|+.+|+++++++|+++.++.++|.+|..+|++++|+..+++++++.|++...+..++.
T Consensus 5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~ 84 (127)
T 4gcn_A 5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAK 84 (127)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHH
Confidence 56788899999999999999999999999999999999999999999999999999999999999999999888888899
Q ss_pred HHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCChhHHHhh
Q 009278 327 ALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKL 368 (538)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 368 (538)
++..+|.++..+++ +++|+..|++++...|+++....+
T Consensus 85 ~~~~lg~~~~~~~~----~~~A~~~~~kal~~~~~~~~~~~l 122 (127)
T 4gcn_A 85 AMSRAGNAFQKQND----LSLAVQWFHRSLSEFRDPELVKKV 122 (127)
T ss_dssp HHHHHHHHHHHTTC----HHHHHHHHHHHHHHSCCHHHHHHH
T ss_pred HHHHHHHHHHHcCC----HHHHHHHHHHHHhhCcCHHHHHHH
Confidence 99999999999999 999999999999987776654443
No 123
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.71 E-value=7.4e-17 Score=125.19 Aligned_cols=108 Identities=30% Similarity=0.387 Sum_probs=98.5
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHHHhccCCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCch-------HHHH
Q 009278 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWS-------KGYS 74 (538)
Q Consensus 2 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-------~~~~ 74 (538)
|.++..+|..++..|+|++|+..|+++++++|+++.++.++|.+|..+|++++|+..|+++++++|++. .++.
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 568899999999999999999999999999999999999999999999999999999999999988764 5788
Q ss_pred HHHHHHhhccCHHHHHHHHHhhhhcCCCcHHHHhhH
Q 009278 75 RLGAAHLGLQDYIEAVNSYKKGLDIDPNNEALKSGL 110 (538)
Q Consensus 75 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 110 (538)
.+|.++..+|++++|+..|++++...|+ ++....+
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l 122 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELVKKV 122 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHHHHH
Confidence 9999999999999999999999998886 4443333
No 124
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.71 E-value=1.7e-16 Score=126.77 Aligned_cols=117 Identities=12% Similarity=0.074 Sum_probs=108.2
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHHHhccCCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHHHHHh
Q 009278 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHL 81 (538)
Q Consensus 2 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 81 (538)
++.++.+|..++..|+|++|+..|++++..+|+++.+|+.+|.++..+|++++|+..|++++.++|+++.+++.+|.++.
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~ 100 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLL 100 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCHHHHHHHHHhhhhcCCCcHHHHhhHHHHHHHHh
Q 009278 82 GLQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAAS 118 (538)
Q Consensus 82 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 118 (538)
..|++++|+..|+++++++|+++........+.....
T Consensus 101 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~ 137 (148)
T 2vgx_A 101 QXGELAEAESGLFLAQELIANXPEFXELSTRVSSMLE 137 (148)
T ss_dssp HTTCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHCcCCCcchHHHHHHHHHHH
Confidence 9999999999999999999998877655555554443
No 125
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.70 E-value=1e-17 Score=154.13 Aligned_cols=128 Identities=24% Similarity=0.398 Sum_probs=124.3
Q ss_pred cCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC---------------chhHhHHHHHHHHhCCchhHHHHHHH
Q 009278 384 FDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKD---------------PRTYSNRAACYTKLGAMPEGLKDADK 448 (538)
Q Consensus 384 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~ 448 (538)
.+|..+..+..+|.+++..|++++|+..|++++.+.|.+ ..++.++|.++..+|++++|+.+|++
T Consensus 142 ~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~ 221 (336)
T 1p5q_A 142 EKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNK 221 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 778889999999999999999999999999999999998 58999999999999999999999999
Q ss_pred HHhcCCCchHHHHHHHHHHHHccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhccCC
Q 009278 449 CIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDGVRRCVQQINKAGRGE 511 (538)
Q Consensus 449 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~ 511 (538)
+++++|+++.+++.+|.++..+|++++|+.+|+++++++|++..++..++.++..+|+..++.
T Consensus 222 al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 284 (336)
T 1p5q_A 222 ALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLARE 284 (336)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999884
No 126
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.70 E-value=3.6e-16 Score=135.47 Aligned_cols=200 Identities=9% Similarity=-0.021 Sum_probs=158.5
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHHHhccCCcchHHHHHH-------HHHHHhcCCHHHHHHHHHHHhccCCCchHHHH-
Q 009278 3 DEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNR-------SAAHASLHNYADALADAKKTVELKPDWSKGYS- 74 (538)
Q Consensus 3 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l-------a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~- 74 (538)
..+|..|.-+ ..+++..|...|.+++..+|...++|.++ +.++...++..+++..+.+.+.+.|....+++
T Consensus 8 ~~~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~ 86 (282)
T 4f3v_A 8 ASLFESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIA 86 (282)
T ss_dssp HHHHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEE
T ss_pred HHHHHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhc
Confidence 3567778876 69999999999999999999999999999 89999999999999999999999887554444
Q ss_pred --------------------HHHHHHhhccCHHHHHHHHHhhhhcCCCcHHHHhhHHHHHHHHhhcccCCCCCCCCcccc
Q 009278 75 --------------------RLGAAHLGLQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGS 134 (538)
Q Consensus 75 --------------------~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 134 (538)
.++.++...|++++|...|..++...|++.
T Consensus 87 ~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~------------------------------ 136 (282)
T 4f3v_A 87 IGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL------------------------------ 136 (282)
T ss_dssp CCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH------------------------------
T ss_pred cCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH------------------------------
Confidence 478899999999999999999888776543
Q ss_pred cccCCchhhcccCCCCCCCcccHHHHHHHHHhhhcCCCchhhhhchHHHHHHHHHHHhhhcCCCCCCCccccccccCCCC
Q 009278 135 AFAGPEMWAKLTADPTTRSYLDQDDFRNMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKG 214 (538)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (538)
T Consensus 137 -------------------------------------------------------------------------------- 136 (282)
T 4f3v_A 137 -------------------------------------------------------------------------------- 136 (282)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccccccCCCCCCCCCCccccHHHHHHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCC-C-HHHHHHHHH
Q 009278 215 PETSKEETRKPESEPEPEPMELTEEEKEAKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDE-D-ISYLTNRAA 292 (538)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~-~~~~~~la~ 292 (538)
..+.+|.+++..++|++|+.+|+.+....+. . ..+++.+|.
T Consensus 137 -------------------------------------~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~ 179 (282)
T 4f3v_A 137 -------------------------------------VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGV 179 (282)
T ss_dssp -------------------------------------HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHH
T ss_pred -------------------------------------HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHH
Confidence 3445567788888888888888877664322 1 347888888
Q ss_pred HHHHhCCHHHHHHHHHHHHHccccchhhHHHHHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhc
Q 009278 293 VYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTE 358 (538)
Q Consensus 293 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 358 (538)
++..+|++++|+..|++++... ..+... ..+.+.+|.++..+|+ .++|...|++++..
T Consensus 180 al~~LG~~~eAl~~l~~a~~g~-~~P~~~---~da~~~~glaL~~lGr----~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 180 AAANLALFTEAERRLTEANDSP-AGEACA---RAIAWYLAMARRSQGN----ESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHTTCHHHHHHHHHHHHTST-TTTTTH---HHHHHHHHHHHHHHTC----HHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHhcCC-CCcccc---HHHHHHHHHHHHHcCC----HHHHHHHHHHHHhc
Confidence 8888888888888888887432 111111 5677788888888888 88888888888883
No 127
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.70 E-value=2.1e-16 Score=129.38 Aligned_cols=127 Identities=29% Similarity=0.533 Sum_probs=115.8
Q ss_pred cCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCchHHHHHH
Q 009278 384 FDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRK 463 (538)
Q Consensus 384 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 463 (538)
.++..+..+..+|.+++..|++++|+.+|+++++++|.++.+++.+|.+|..+|++++|+.+|+++++++|+++.+++.+
T Consensus 6 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 85 (164)
T 3sz7_A 6 APTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRL 85 (164)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 35667889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHccCHHHHHHHHHHHhccCCCCHH--HHHHHHHHHHHhhhhccC
Q 009278 464 GAIQFFLKEYDKALETYQEGLKHDPQNQE--LLDGVRRCVQQINKAGRG 510 (538)
Q Consensus 464 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~--~~~~l~~~~~~~~~~~~a 510 (538)
|.++..+|++++|+.+|+++++++|++.. +...+..+..++++....
T Consensus 86 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~~ 134 (164)
T 3sz7_A 86 GLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKRKIEEANRG 134 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999988 455555666666655443
No 128
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.70 E-value=2.2e-16 Score=125.55 Aligned_cols=117 Identities=18% Similarity=0.150 Sum_probs=108.9
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHHHhccCCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHHHHHh
Q 009278 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHL 81 (538)
Q Consensus 2 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 81 (538)
++.++..|..++..|+|++|+..|++++..+|+++.+|+.+|.++...|++++|+..|++++.++|+++.+++.+|.++.
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCHHHHHHHHHhhhhcCCCcHHHHhhHHHHHHHHh
Q 009278 82 GLQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAAS 118 (538)
Q Consensus 82 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 118 (538)
..|++++|+..|+++++++|+++........+.....
T Consensus 98 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~ 134 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLE 134 (142)
T ss_dssp HTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHH
Confidence 9999999999999999999998887666666555543
No 129
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.69 E-value=2.1e-16 Score=129.10 Aligned_cols=120 Identities=18% Similarity=0.228 Sum_probs=112.3
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHHHhcc------------------CCcchHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 009278 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAISL------------------SPDNHVLYSNRSAAHASLHNYADALADAKKTV 63 (538)
Q Consensus 2 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~------------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 63 (538)
++.+..+|..++..|+|++|+..|++++.. +|.++.+++++|.|+..+|++++|+..+++++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 578999999999999999999999999998 77778999999999999999999999999999
Q ss_pred ccCCCchHHHHHHHHHHhhccCHHHHHHHHHhhhhcCCCcH-HHHhhHHHHHHHHhhcc
Q 009278 64 ELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNE-ALKSGLADAKAAASASF 121 (538)
Q Consensus 64 ~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~~~~~~ 121 (538)
.++|+++.+++.+|.++..+|++++|+..|+++++++|++. .+...+..+........
T Consensus 91 ~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~ 149 (162)
T 3rkv_A 91 KREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAEKK 149 (162)
T ss_dssp HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHT
T ss_pred hcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999 67778888877776553
No 130
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.69 E-value=1.4e-16 Score=142.63 Aligned_cols=180 Identities=14% Similarity=0.101 Sum_probs=86.9
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCCh
Q 009278 283 DISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNP 362 (538)
Q Consensus 283 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~ 362 (538)
+...+..+|.++...|++++|+..|++++..+|++ ..++..+|.++...++ +++|+..+++++.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~~~----~~~A~~~~~~al~----- 66 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV-------AVYYTNRALCYLKMQQ----PEQALADCRRALE----- 66 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC-------HHHHHHHHHHHHHTTC----HHHHHHHHHHHTT-----
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcc-------HHHHHHHHHHHHHhcC----HHHHHHHHHHHHH-----
Confidence 34444445555555555555555555555544444 3334444444444444 5555555544444
Q ss_pred hHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHhHHHHHHHHhCCchhH
Q 009278 363 DTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEG 442 (538)
Q Consensus 363 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A 442 (538)
.+|+++.+++.+|.++...|++++|+..|+++++++|+++..+......... ..++
T Consensus 67 ---------------------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~---~~~~ 122 (281)
T 2c2l_A 67 ---------------------LDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR---IAKK 122 (281)
T ss_dssp ---------------------SCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHH---HHHH
T ss_pred ---------------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHH---HHHH
Confidence 4455555555555555555555555555555555555443333222222221 1112
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHHccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHh
Q 009278 443 LKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDGVRRCVQQI 504 (538)
Q Consensus 443 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 504 (538)
...........|.++.+...++.++ .|++++|++.|+++++++|++......+..++...
T Consensus 123 ~~~~~~~~~~~~~~~~i~~~l~~l~--~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 182 (281)
T 2c2l_A 123 KRWNSIEERRIHQESELHSYLTRLI--AAERERELEECQRNHEGHEDDGHIRAQQACIEAKH 182 (281)
T ss_dssp HHHHHHHHTCCCCCCHHHHHHHHHH--HHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHH--HHHHHHHHHHHHhhhccccchhhhhhHHHHHHHHH
Confidence 2222222234445555555554443 45566666666666666665555555555544444
No 131
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.69 E-value=3.7e-16 Score=127.88 Aligned_cols=119 Identities=34% Similarity=0.550 Sum_probs=110.1
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHHHhccCCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHHHHHh
Q 009278 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHL 81 (538)
Q Consensus 2 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 81 (538)
++.++.+|..++..|+|++|+..|++++..+|.++.+++.+|.++..+|++++|+..|++++.++|+++.+|+.+|.++.
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCHHHHHHHHHhhhhcCCCcHHH--HhhHHHHHHHHhhc
Q 009278 82 GLQDYIEAVNSYKKGLDIDPNNEAL--KSGLADAKAAASAS 120 (538)
Q Consensus 82 ~~~~~~~A~~~~~~al~~~p~~~~~--~~~l~~~~~~~~~~ 120 (538)
.+|++++|+..|+++++++|++..+ ...+..+....++.
T Consensus 91 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~ 131 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKRKIEEA 131 (164)
T ss_dssp HTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999884 44555555555554
No 132
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.69 E-value=7.4e-17 Score=125.98 Aligned_cols=117 Identities=15% Similarity=0.118 Sum_probs=107.8
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC-------Cch-----hHhHHHHHHHHhCCchhHHHHHHHHHhc----
Q 009278 389 ADEEREKGNEFFKQQKYPEAIQHYTESLRRNPK-------DPR-----TYSNRAACYTKLGAMPEGLKDADKCIEL---- 452 (538)
Q Consensus 389 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-------~~~-----~~~~la~~~~~~~~~~~A~~~~~~al~~---- 452 (538)
...+...|..++..|+|++|+..|+++++++|+ +.. +|.++|.++..+|++++|+.+|++++++
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 566788999999999999999999999999998 333 9999999999999999999999999999
Q ss_pred ---CCCchHHH----HHHHHHHHHccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhh
Q 009278 453 ---DPTFSKGY----TRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDGVRRCVQQIN 505 (538)
Q Consensus 453 ---~p~~~~~~----~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 505 (538)
+|+++.+| +++|.++..+|++++|+.+|+++++++|++..+...+..+.....
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~~~ 150 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVAI 150 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHHH
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 99999999 999999999999999999999999999999888877777765544
No 133
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.69 E-value=1.7e-16 Score=155.20 Aligned_cols=180 Identities=11% Similarity=0.052 Sum_probs=118.2
Q ss_pred Hhccc-HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCC----------HHHHHHHHHHHHHccccchhhHHHHHHHHH
Q 009278 261 YKKKE-FEKAIEHYSSALELDDEDISYLTNRAAVYLEMGK----------YEECIKDCDKAVERGRELRSDFKMIARALT 329 (538)
Q Consensus 261 ~~~~~-~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~----------~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (538)
...|+ .++|+..+.+++..+|++..+|+.++.++...|+ +++++..+++++..+|++ ..+|.
T Consensus 39 ~~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~-------y~aW~ 111 (567)
T 1dce_A 39 RQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKS-------YGTWH 111 (567)
T ss_dssp HHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTC-------HHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCC-------HHHHH
Confidence 34444 4688999999999999999999999999999887 666666666666666666 44555
Q ss_pred HhHHHHHHhhhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcC-ChHHH
Q 009278 330 RKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQ-KYPEA 408 (538)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~-~~~~A 408 (538)
..+.++..++. .++++++..++++++ .+|.+..+|...+.++...| .++++
T Consensus 112 hR~w~l~~l~~--~~~~~el~~~~k~l~--------------------------~d~~N~~aW~~R~~~l~~l~~~~~~e 163 (567)
T 1dce_A 112 HRCWLLSRLPE--PNWARELELCARFLE--------------------------ADERNFHCWDYRRFVAAQAAVAPAEE 163 (567)
T ss_dssp HHHHHHHTCSS--CCHHHHHHHHHHHHH--------------------------HCTTCHHHHHHHHHHHHHTCCCHHHH
T ss_pred HHHHHHHHccc--ccHHHHHHHHHHHHh--------------------------hccccccHHHHHHHHHHHcCCChHHH
Confidence 55555544441 004555555555555 56666666666666666666 56666
Q ss_pred HHHHHHHHhcCCCCchhHhHHHHHHHHh--------------CCchhHHHHHHHHHhcCCCchHHHHHHHHHHHHccCHH
Q 009278 409 IQHYTESLRRNPKDPRTYSNRAACYTKL--------------GAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYD 474 (538)
Q Consensus 409 ~~~~~~al~~~~~~~~~~~~la~~~~~~--------------~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 474 (538)
++++.++++.+|.+..+|+.++.++..+ +.+++|++++.+++..+|++..+|+.++.++...++++
T Consensus 164 l~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~ 243 (567)
T 1dce_A 164 LAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHD 243 (567)
T ss_dssp HHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCS
T ss_pred HHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCcc
Confidence 6666666666666666666666666554 33456666666666666666666666666666555544
Q ss_pred H
Q 009278 475 K 475 (538)
Q Consensus 475 ~ 475 (538)
+
T Consensus 244 ~ 244 (567)
T 1dce_A 244 V 244 (567)
T ss_dssp C
T ss_pred c
Confidence 4
No 134
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.68 E-value=1.4e-15 Score=119.86 Aligned_cols=134 Identities=34% Similarity=0.577 Sum_probs=120.6
Q ss_pred HHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcCChH
Q 009278 327 ALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYP 406 (538)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 406 (538)
++..+|.++...++ +++|+..+++++. ..|.+...+..+|.++...|+++
T Consensus 3 ~~~~l~~~~~~~~~----~~~A~~~~~~~~~--------------------------~~~~~~~~~~~~a~~~~~~~~~~ 52 (136)
T 2fo7_A 3 AWYNLGNAYYKQGD----YDEAIEYYQKALE--------------------------LDPRSAEAWYNLGNAYYKQGDYD 52 (136)
T ss_dssp HHHHHHHHHHHHTC----HHHHHHHHHHHHH--------------------------HCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHcCc----HHHHHHHHHHHHH--------------------------cCCcchhHHHHHHHHHHHhcCHH
Confidence 45667777777777 8888888888887 77888889999999999999999
Q ss_pred HHHHHHHHHHhcCCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCchHHHHHHHHHHHHccCHHHHHHHHHHHhcc
Q 009278 407 EAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKH 486 (538)
Q Consensus 407 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 486 (538)
+|+..+++++...|.++.++..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|...|++++..
T Consensus 53 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 53 EAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCC
Q 009278 487 DPQN 490 (538)
Q Consensus 487 ~p~~ 490 (538)
+|++
T Consensus 133 ~~~~ 136 (136)
T 2fo7_A 133 DPRS 136 (136)
T ss_dssp STTC
T ss_pred CCCC
Confidence 8863
No 135
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.68 E-value=4.9e-16 Score=129.03 Aligned_cols=130 Identities=16% Similarity=0.236 Sum_probs=115.4
Q ss_pred hhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHhHHHHH-HHHhCCc--hhHHH
Q 009278 368 LNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAAC-YTKLGAM--PEGLK 444 (538)
Q Consensus 368 ~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~-~~~~~~~--~~A~~ 444 (538)
.+++++|+..+.+++..+|.++.++..+|.++...|++++|+.+|++++..+|.++.++..+|.+ +...|++ ++|+.
T Consensus 23 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~ 102 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRA 102 (177)
T ss_dssp ----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHH
Confidence 34445555555555559999999999999999999999999999999999999999999999999 8899999 99999
Q ss_pred HHHHHHhcCCCchHHHHHHHHHHHHccCHHHHHHHHHHHhccCCCCHHHHHHH
Q 009278 445 DADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDGV 497 (538)
Q Consensus 445 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 497 (538)
+++++++.+|+++.+++.+|.++...|++++|+..|++++.++|+++.....+
T Consensus 103 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 155 (177)
T 2e2e_A 103 MIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLV 155 (177)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHH
Confidence 99999999999999999999999999999999999999999999987655433
No 136
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.68 E-value=2.9e-16 Score=120.59 Aligned_cols=102 Identities=15% Similarity=0.129 Sum_probs=93.4
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHhccCCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHHHHHhhc
Q 009278 4 EAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGL 83 (538)
Q Consensus 4 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 83 (538)
.++.+|..++..|++++|+..|++++..+|+++.+|+.+|.++...|++++|+..|++++.++|+++.+++.+|.++...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHhhhhcCCCcHH
Q 009278 84 QDYIEAVNSYKKGLDIDPNNEA 105 (538)
Q Consensus 84 ~~~~~A~~~~~~al~~~p~~~~ 105 (538)
|++++|+..|+++++.+|++..
T Consensus 99 g~~~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp HHHHHHHHHHHHHHC-------
T ss_pred CCHHHHHHHHHHHHHhCcCCCC
Confidence 9999999999999999998753
No 137
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.67 E-value=5e-16 Score=126.77 Aligned_cols=124 Identities=23% Similarity=0.394 Sum_probs=116.6
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHHHHHhc------------------CCCCchhHhHHHHHHHHhCCchhHHHHHHHH
Q 009278 388 IADEEREKGNEFFKQQKYPEAIQHYTESLRR------------------NPKDPRTYSNRAACYTKLGAMPEGLKDADKC 449 (538)
Q Consensus 388 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~------------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 449 (538)
.+..+...|..++..|+|++|+..|.+++.. +|.++.++.++|.+|..+|++++|+..++++
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 4667889999999999999999999999998 6666789999999999999999999999999
Q ss_pred HhcCCCchHHHHHHHHHHHHccCHHHHHHHHHHHhccCCCCH-HHHHHHHHHHHHhhhhccCC
Q 009278 450 IELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQ-ELLDGVRRCVQQINKAGRGE 511 (538)
Q Consensus 450 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~~~~~~~a~ 511 (538)
++++|+++.+++.+|.++..+|++++|+..|++++.++|+++ .+...+..+...+++..+..
T Consensus 90 l~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~~~ 152 (162)
T 3rkv_A 90 LKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAEKKADS 152 (162)
T ss_dssp HHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHTTSS
T ss_pred HhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999 78889999999988887765
No 138
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.67 E-value=7e-16 Score=121.35 Aligned_cols=123 Identities=48% Similarity=0.850 Sum_probs=118.4
Q ss_pred cCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCchHHHHHH
Q 009278 384 FDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRK 463 (538)
Q Consensus 384 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 463 (538)
..|..+..+..+|.++...|++++|+..|++++...|.++.++..+|.++...|++++|+.+++++++.+|+++.+++.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 90 (133)
T 2lni_A 11 MNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRK 90 (133)
T ss_dssp SSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 45778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhh
Q 009278 464 GAIQFFLKEYDKALETYQEGLKHDPQNQELLDGVRRCVQQINK 506 (538)
Q Consensus 464 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 506 (538)
|.++...|++++|+.+|++++..+|++..++..++.++...|+
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999988764
No 139
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.67 E-value=2.6e-15 Score=118.38 Aligned_cols=105 Identities=30% Similarity=0.488 Sum_probs=99.6
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHHHhccCCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHHHHHh
Q 009278 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHL 81 (538)
Q Consensus 2 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 81 (538)
+++++..|..+...|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++...|.++.++..+|.++.
T Consensus 1 a~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYY 80 (136)
T ss_dssp CHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCHHHHHHHHHhhhhcCCCcHHH
Q 009278 82 GLQDYIEAVNSYKKGLDIDPNNEAL 106 (538)
Q Consensus 82 ~~~~~~~A~~~~~~al~~~p~~~~~ 106 (538)
..|++++|+..+++++...|.+..+
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~~~~~~ 105 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDPRSAEA 105 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HhcCHHHHHHHHHHHHHhCCCChHH
Confidence 9999999999999999988876543
No 140
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.67 E-value=9e-16 Score=120.28 Aligned_cols=124 Identities=28% Similarity=0.504 Sum_probs=119.3
Q ss_pred cCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCchHHHHHH
Q 009278 384 FDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRK 463 (538)
Q Consensus 384 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 463 (538)
.+|..+..+..+|.++...|++++|+..|++++...|.++.++..+|.++...|++++|+.++++++..+|+++.+++.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 86 (131)
T 2vyi_A 7 EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRM 86 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHH
Confidence 45667889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhh
Q 009278 464 GAIQFFLKEYDKALETYQEGLKHDPQNQELLDGVRRCVQQINKA 507 (538)
Q Consensus 464 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 507 (538)
|.++...|++++|+.+|+++++++|+++.++..++.++..+|++
T Consensus 87 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 87 GLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999875
No 141
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.67 E-value=7.3e-16 Score=121.95 Aligned_cols=126 Identities=28% Similarity=0.433 Sum_probs=117.3
Q ss_pred cCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCchHHHHHH
Q 009278 384 FDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRK 463 (538)
Q Consensus 384 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 463 (538)
.+|..+..+..+|.+++..|++++|+..|++++..+|.++.++..+|.++..+|++++|+..++++++.+|+++.+++.+
T Consensus 4 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 83 (137)
T 3q49_B 4 MKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 83 (137)
T ss_dssp --CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHH
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHccCHHHHHHHHHHHhccCCC-----CHHHHHHHHHHHHHhhhhcc
Q 009278 464 GAIQFFLKEYDKALETYQEGLKHDPQ-----NQELLDGVRRCVQQINKAGR 509 (538)
Q Consensus 464 ~~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~l~~~~~~~~~~~~ 509 (538)
|.++...|++++|+..|++++.++|+ +..+...+..+........+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~e 134 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIE 134 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998 78888888888777665443
No 142
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.67 E-value=1.6e-16 Score=134.69 Aligned_cols=128 Identities=25% Similarity=0.407 Sum_probs=120.5
Q ss_pred cCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCc----------------hhHhHHHHHHHHhCCchhHHHHHH
Q 009278 384 FDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDP----------------RTYSNRAACYTKLGAMPEGLKDAD 447 (538)
Q Consensus 384 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~----------------~~~~~la~~~~~~~~~~~A~~~~~ 447 (538)
..+.....+..+|..++..|++++|+..|++++...|.++ .++.++|.++..+|++++|+.+++
T Consensus 33 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 112 (198)
T 2fbn_A 33 EKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHAS 112 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 4455677889999999999999999999999999999887 899999999999999999999999
Q ss_pred HHHhcCCCchHHHHHHHHHHHHccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhccCC
Q 009278 448 KCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDGVRRCVQQINKAGRGE 511 (538)
Q Consensus 448 ~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~ 511 (538)
+++..+|+++.+++.+|.++..+|++++|+.+|+++++++|++..++..++.++..+++..++.
T Consensus 113 ~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 113 KVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999998876
No 143
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.66 E-value=1.3e-14 Score=127.41 Aligned_cols=186 Identities=10% Similarity=-0.004 Sum_probs=135.6
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccc--cchhhHHHHHHHHHHhHHHHHHhhhcccChh
Q 009278 269 AIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGR--ELRSDFKMIARALTRKGTALVKMAKCSKDYE 346 (538)
Q Consensus 269 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (538)
|+..+++.+...+.+..++..+|.++...|++++|+..+.+.+..+| .+ ..++.....++..+++ .+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~-------lea~~l~vqi~L~~~r----~d 153 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGT-------TELLLLAIEVALLNNN----VS 153 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTH-------HHHHHHHHHHHHHTTC----HH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCc-------HHHHHHHHHHHHHCCC----HH
Confidence 56666666665555555566777777777777777777777766665 22 4455555566666666 77
Q ss_pred HHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCC------CchHHHHHHHHHHHhcC--ChHHHHHHHHHHHhc
Q 009278 347 PAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDP------KIADEEREKGNEFFKQQ--KYPEAIQHYTESLRR 418 (538)
Q Consensus 347 ~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~la~~~~~~~--~~~~A~~~~~~al~~ 418 (538)
.|.+.++++.+ .+| +.......-|++.+..| ++.+|..+|+++.+.
T Consensus 154 ~A~k~l~~~~~--------------------------~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~ 207 (310)
T 3mv2_B 154 TASTIFDNYTN--------------------------AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT 207 (310)
T ss_dssp HHHHHHHHHHH--------------------------HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT
T ss_pred HHHHHHHHHHh--------------------------cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh
Confidence 77777766666 444 22223333355566556 899999999999888
Q ss_pred CCC--CchhHhHHHHHHHHhCCchhHHHHHHHHHhc----------CCCchHHHHHHHHHHHHccCHHHHHHHHHHHhcc
Q 009278 419 NPK--DPRTYSNRAACYTKLGAMPEGLKDADKCIEL----------DPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKH 486 (538)
Q Consensus 419 ~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~----------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 486 (538)
.|+ .+..+++ ++..+|++++|...++.+++. +|+++.++.+++.+...+|+ +|.++++++.+.
T Consensus 208 ~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 208 FPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp SCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred CCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 886 3344444 899999999999999988876 48899999999999999998 899999999999
Q ss_pred CCCCHHHHHH
Q 009278 487 DPQNQELLDG 496 (538)
Q Consensus 487 ~p~~~~~~~~ 496 (538)
+|+++.+...
T Consensus 283 ~P~hp~i~d~ 292 (310)
T 3mv2_B 283 DHEHAFIKHH 292 (310)
T ss_dssp TCCCHHHHHH
T ss_pred CCCChHHHHH
Confidence 9999987643
No 144
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.66 E-value=3.6e-15 Score=134.77 Aligned_cols=181 Identities=13% Similarity=0.087 Sum_probs=138.0
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCC
Q 009278 282 EDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRN 361 (538)
Q Consensus 282 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 361 (538)
.....+...+..+...|++++|+..+.++++..+..... ......+..+|.++...++ +++|+..+++++...+.
T Consensus 73 ~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~----~~~A~~~~~~al~~~~~ 147 (293)
T 2qfc_A 73 ERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEF-QQFLQWQYYVAAYVLKKVD----YEYCILELKKLLNQQLT 147 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHH-HHHHHHHHHHHHHHHTSSC----HHHHHHHHHHHHTTCCC
T ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhH-HHHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHHHHhc
Confidence 334455566777778888888888888888776653322 2234555667777777777 88999998888874432
Q ss_pred hhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcCChHHHHHHHHHHH---hcCCCCc----hhHhHHHHHHH
Q 009278 362 PDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESL---RRNPKDP----RTYSNRAACYT 434 (538)
Q Consensus 362 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al---~~~~~~~----~~~~~la~~~~ 434 (538)
.. .......++..+|.+|...|++++|+.+|++++ +..|++. .+++++|.+|.
T Consensus 148 ~~--------------------~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~ 207 (293)
T 2qfc_A 148 GI--------------------DVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALY 207 (293)
T ss_dssp SS--------------------CTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHH
T ss_pred CC--------------------chHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHH
Confidence 11 111225688999999999999999999999999 4455532 68999999999
Q ss_pred HhCCchhHHHHHHHHHhcCCC------chHHHHHHHHHHHHccCHHHH-HHHHHHHhccC
Q 009278 435 KLGAMPEGLKDADKCIELDPT------FSKGYTRKGAIQFFLKEYDKA-LETYQEGLKHD 487 (538)
Q Consensus 435 ~~~~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~g~~~~A-~~~~~~al~~~ 487 (538)
.+|++++|+.++++++++.++ .+.+++++|.++..+|++++| ..+|++++.+.
T Consensus 208 ~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 208 LDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 999999999999999987532 267899999999999999999 88899998753
No 145
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.66 E-value=9.5e-15 Score=124.78 Aligned_cols=188 Identities=14% Similarity=0.046 Sum_probs=153.7
Q ss_pred cccHHHHHHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhC----CHHHHHHHHHHH
Q 009278 235 ELTEEEKEAKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMG----KYEECIKDCDKA 310 (538)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~----~~~~A~~~~~~~ 310 (538)
++..+...... ..+.+++.+|.++...+++++|+.+|+++.+. .++.+++.+|.+|.. + ++++|+.+|+++
T Consensus 5 A~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A 79 (212)
T 3rjv_A 5 PGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEKA 79 (212)
T ss_dssp TTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHH
Confidence 33444444433 57889999999999999999999999999875 689999999999998 7 999999999999
Q ss_pred HHccccchhhHHHHHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCC--Cc
Q 009278 311 VERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDP--KI 388 (538)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~--~~ 388 (538)
.+. .+ +.+++.+|.++..-....+++++|+.+|+++.. ..+ ..
T Consensus 80 ~~~--g~-------~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~--------------------------~~~~~~~ 124 (212)
T 3rjv_A 80 VEA--GS-------KSGEIVLARVLVNRQAGATDVAHAITLLQDAAR--------------------------DSESDAA 124 (212)
T ss_dssp HHT--TC-------HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTS--------------------------STTSHHH
T ss_pred HHC--CC-------HHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHH--------------------------cCCCcch
Confidence 764 34 677888888877622223349999999999988 555 35
Q ss_pred hHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCchhHhHHHHHHHHh-C-----CchhHHHHHHHHHhcCCCchH
Q 009278 389 ADEEREKGNEFFK----QQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKL-G-----AMPEGLKDADKCIELDPTFSK 458 (538)
Q Consensus 389 ~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~-~-----~~~~A~~~~~~al~~~p~~~~ 458 (538)
+.+++.+|.+|.. .+++++|+.+|+++++. |.++.+++++|.+|... | ++++|+.+|+++++.. ++.
T Consensus 125 ~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g--~~~ 201 (212)
T 3rjv_A 125 VDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG--FDT 201 (212)
T ss_dssp HHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT--CHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC--CHH
Confidence 8899999999999 89999999999999998 77888999999999864 3 8999999999999885 345
Q ss_pred HHHHHHH
Q 009278 459 GYTRKGA 465 (538)
Q Consensus 459 ~~~~l~~ 465 (538)
+...++.
T Consensus 202 A~~~l~~ 208 (212)
T 3rjv_A 202 GCEEFDR 208 (212)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5554543
No 146
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.65 E-value=2.3e-15 Score=123.48 Aligned_cols=136 Identities=26% Similarity=0.475 Sum_probs=125.1
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCchHHHHHHHHHH
Q 009278 388 IADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQ 467 (538)
Q Consensus 388 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 467 (538)
.+..+..+|.++...|++++|+..|++++...|.++.++..+|.++...|++++|+.++++++..+|+++.+++.+|.++
T Consensus 12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHccCHHHHHHHHHHHhccCCCCHHHHHHHHHH--HHHhhhhccCCCChHHHHHHHHh
Q 009278 468 FFLKEYDKALETYQEGLKHDPQNQELLDGVRRC--VQQINKAGRGELSPEELKERQAK 523 (538)
Q Consensus 468 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~ 523 (538)
...|++++|+.+|+++++++|++..++..++.+ +...|++++|...+++....+..
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 149 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDS 149 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHhcc
Confidence 999999999999999999999999998665555 77889999998877776666654
No 147
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.65 E-value=2e-15 Score=118.74 Aligned_cols=117 Identities=38% Similarity=0.617 Sum_probs=112.6
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHHHhccCCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHHHHHh
Q 009278 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHL 81 (538)
Q Consensus 2 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 81 (538)
..+++.+|..++..|++++|+..|++++..+|.++.+++.+|.++...|++++|+..+++++..+|+++.+++.+|.++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 95 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALE 95 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCHHHHHHHHHhhhhcCCCcHHHHhhHHHHHHHHh
Q 009278 82 GLQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAAS 118 (538)
Q Consensus 82 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 118 (538)
..|++++|+..|+++++.+|++..++..++.++...|
T Consensus 96 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 96 AMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred HHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999887664
No 148
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.65 E-value=1.1e-15 Score=117.26 Aligned_cols=103 Identities=14% Similarity=0.130 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCchHHHHHHHHHHHH
Q 009278 390 DEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFF 469 (538)
Q Consensus 390 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 469 (538)
..++.+|..+...|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+..|+++++++|+++.+++.+|.++..
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHHHHHHhccCCCCHH
Q 009278 470 LKEYDKALETYQEGLKHDPQNQE 492 (538)
Q Consensus 470 ~g~~~~A~~~~~~al~~~p~~~~ 492 (538)
.|++++|+..|+++++++|++..
T Consensus 98 ~g~~~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp HHHHHHHHHHHHHHHC-------
T ss_pred cCCHHHHHHHHHHHHHhCcCCCC
Confidence 99999999999999999998754
No 149
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.65 E-value=3.8e-14 Score=124.45 Aligned_cols=173 Identities=11% Similarity=0.005 Sum_probs=137.5
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcccc----chhhHHHHH
Q 009278 252 KEKEAGNAAYKKKEFEKAIEHYSSALELDD--EDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRE----LRSDFKMIA 325 (538)
Q Consensus 252 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~~~ 325 (538)
.+..+|.++...|++++|+.++.+.+..+| .+.+++..++.++..+|+.+.|.+.++++.+.+|+ +......++
T Consensus 102 ~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~La 181 (310)
T 3mv2_B 102 ELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLA 181 (310)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHH
Confidence 346789999999999999999999999987 88999999999999999999999999999998883 112222223
Q ss_pred HHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcCCh
Q 009278 326 RALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKY 405 (538)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 405 (538)
.+|. ....| .+++.+|...|+++.. ..|+.......++ ++..+|++
T Consensus 182 ea~v-----~l~~g--~~~~q~A~~~f~El~~--------------------------~~p~~~~~~lLln-~~~~~g~~ 227 (310)
T 3mv2_B 182 ESYI-----KFATN--KETATSNFYYYEELSQ--------------------------TFPTWKTQLGLLN-LHLQQRNI 227 (310)
T ss_dssp HHHH-----HHHHT--CSTTTHHHHHHHHHHT--------------------------TSCSHHHHHHHHH-HHHHHTCH
T ss_pred HHHH-----HHHhC--CccHHHHHHHHHHHHH--------------------------hCCCcccHHHHHH-HHHHcCCH
Confidence 3322 22233 1239999999999877 4554222222223 89999999
Q ss_pred HHHHHHHHHHHhc----------CCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCchHHH
Q 009278 406 PEAIQHYTESLRR----------NPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGY 460 (538)
Q Consensus 406 ~~A~~~~~~al~~----------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 460 (538)
++|...++.+++. +|+++.++.+++.+...+|+ +|.++++++.+.+|+++.+.
T Consensus 228 ~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~ 290 (310)
T 3mv2_B 228 AEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIK 290 (310)
T ss_dssp HHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHH
T ss_pred HHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHH
Confidence 9999999988776 48899999999999999997 89999999999999998764
No 150
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.64 E-value=2.2e-14 Score=129.55 Aligned_cols=180 Identities=13% Similarity=0.140 Sum_probs=150.1
Q ss_pred HhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCH------HHHHHHHHHHHHhCCHHHHHHHHHHHHHccccch
Q 009278 245 ERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDI------SYLTNRAAVYLEMGKYEECIKDCDKAVERGRELR 318 (538)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~ 318 (538)
..+.....+...+..+...|++++|+..+.++++..|... ..++.+|.++...|++++|+..+++++...+...
T Consensus 70 ~~~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~ 149 (293)
T 2qfc_A 70 SDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGI 149 (293)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSS
T ss_pred cchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCC
Confidence 4566777888899999999999999999999999887654 3466788999999999999999999998776543
Q ss_pred hhHHHHHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCc----hHHHHH
Q 009278 319 SDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKI----ADEERE 394 (538)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~ 394 (538)
..+. .+.++..+|.++...++ +++|+.+|++++.... ..|+. ..++.+
T Consensus 150 ~~~~-~~~~~~~lg~~y~~~~~----~~~A~~~~~kal~~~~-----------------------~~~~~~~~~~~~~~n 201 (293)
T 2qfc_A 150 DVYQ-NLYIENAIANIYAENGY----LKKGIDLFEQILKQLE-----------------------ALHDNEEFDVKVRYN 201 (293)
T ss_dssp CTTH-HHHHHHHHHHHHHHTTC----HHHHHHHHHHHHHHHH-----------------------HSCCCHHHHHHHHHH
T ss_pred chHH-HHHHHHHHHHHHHHcCC----HHHHHHHHHHHHHHHH-----------------------hcCccccchHHHHHh
Confidence 3322 36789999999999999 9999999999995210 22332 268899
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCC------CchhHhHHHHHHHHhCCchhH-HHHHHHHHhc
Q 009278 395 KGNEFFKQQKYPEAIQHYTESLRRNPK------DPRTYSNRAACYTKLGAMPEG-LKDADKCIEL 452 (538)
Q Consensus 395 la~~~~~~~~~~~A~~~~~~al~~~~~------~~~~~~~la~~~~~~~~~~~A-~~~~~~al~~ 452 (538)
+|.+|...|++++|+.++++++++.+. ...+++++|.+|..+|++++| ..++++++.+
T Consensus 202 lg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 202 HAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 999999999999999999999987542 157899999999999999999 8889999875
No 151
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.64 E-value=5.9e-15 Score=113.15 Aligned_cols=113 Identities=50% Similarity=0.742 Sum_probs=108.8
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHHHhccCCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHHHHHh
Q 009278 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHL 81 (538)
Q Consensus 2 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 81 (538)
++.++..|..++..|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++..+|+++.++..+|.++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCHHHHHHHHHhhhhcCCCcHHHHhhHHHHH
Q 009278 82 GLQDYIEAVNSYKKGLDIDPNNEALKSGLADAK 114 (538)
Q Consensus 82 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 114 (538)
..|++++|+..|+++++.+|+++.++..++.+.
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 999999999999999999999999988887764
No 152
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.63 E-value=3.5e-15 Score=116.58 Aligned_cols=116 Identities=20% Similarity=0.221 Sum_probs=106.9
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHHHHhccCCcch---HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCc---hHHHH
Q 009278 1 MADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNH---VLYSNRSAAHASLHNYADALADAKKTVELKPDW---SKGYS 74 (538)
Q Consensus 1 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~ 74 (538)
|+++++.+|..++..|+|++|+..|++++..+|+++ .+++.+|.++...|++++|+..|++++..+|++ +.+++
T Consensus 1 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~ 80 (129)
T 2xev_A 1 MARTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLL 80 (129)
T ss_dssp --CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHH
T ss_pred CcHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHH
Confidence 467889999999999999999999999999999988 799999999999999999999999999999999 88899
Q ss_pred HHHHHHhhccCHHHHHHHHHhhhhcCCCcHHHHhhHHHHHHH
Q 009278 75 RLGAAHLGLQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAA 116 (538)
Q Consensus 75 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 116 (538)
.+|.++...|++++|+..|++++...|+++.+......+...
T Consensus 81 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l 122 (129)
T 2xev_A 81 KLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSI 122 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHH
Confidence 999999999999999999999999999998887766655443
No 153
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.63 E-value=8.9e-15 Score=125.55 Aligned_cols=136 Identities=15% Similarity=0.132 Sum_probs=122.0
Q ss_pred HHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcCC
Q 009278 325 ARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQK 404 (538)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 404 (538)
+..++.+|..+...++ +++|+..|++++. | ++.++..+|.++...|+
T Consensus 6 ~~~~~~~g~~~~~~~~----~~~A~~~~~~a~~----------------------------~-~~~~~~~lg~~~~~~g~ 52 (213)
T 1hh8_A 6 AISLWNEGVLAADKKD----WKGALDAFSAVQD----------------------------P-HSRICFNIGCMYTILKN 52 (213)
T ss_dssp HHHHHHHHHHHHHTTC----HHHHHHHHHTSSS----------------------------C-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhCC----HHHHHHHHHHHcC----------------------------C-ChHHHHHHHHHHHHcCC
Confidence 3456677777777777 8888888877743 2 56799999999999999
Q ss_pred hHHHHHHHHHHHhcCCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCch----------------HHHHHHHHHHH
Q 009278 405 YPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFS----------------KGYTRKGAIQF 468 (538)
Q Consensus 405 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~----------------~~~~~l~~~~~ 468 (538)
+++|+..|++++..+|.++.+++.+|.++...|++++|+..|+++++..|.+. .+++.+|.++.
T Consensus 53 ~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 132 (213)
T 1hh8_A 53 MTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYA 132 (213)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999888776 89999999999
Q ss_pred HccCHHHHHHHHHHHhccCCCCHHH
Q 009278 469 FLKEYDKALETYQEGLKHDPQNQEL 493 (538)
Q Consensus 469 ~~g~~~~A~~~~~~al~~~p~~~~~ 493 (538)
..|++++|+.+|+++++++|++...
T Consensus 133 ~~g~~~~A~~~~~~al~~~p~~~~~ 157 (213)
T 1hh8_A 133 KKEEWKKAEEQLALATSMKSEPRHS 157 (213)
T ss_dssp HTTCHHHHHHHHHHHHTTCCSGGGG
T ss_pred HccCHHHHHHHHHHHHHcCcccccc
Confidence 9999999999999999999987543
No 154
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.63 E-value=1.6e-16 Score=152.59 Aligned_cols=128 Identities=25% Similarity=0.423 Sum_probs=119.4
Q ss_pred cCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC---------------chhHhHHHHHHHHhCCchhHHHHHHH
Q 009278 384 FDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKD---------------PRTYSNRAACYTKLGAMPEGLKDADK 448 (538)
Q Consensus 384 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~ 448 (538)
..|..+..+..+|.+++..|+|++|+..|++++.+.|.+ ..+|+++|.+|..+|++++|+.+|++
T Consensus 263 ~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~ 342 (457)
T 1kt0_A 263 EKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDK 342 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 677888999999999999999999999999999999988 58999999999999999999999999
Q ss_pred HHhcCCCchHHHHHHHHHHHHccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhccCC
Q 009278 449 CIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDGVRRCVQQINKAGRGE 511 (538)
Q Consensus 449 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~ 511 (538)
+++++|+++.+++.+|.+|..+|++++|+.+|+++++++|++..++..++.++..+++..++.
T Consensus 343 al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 343 ALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999988765
No 155
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.63 E-value=5.6e-16 Score=131.21 Aligned_cols=97 Identities=18% Similarity=0.161 Sum_probs=84.1
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCchHHHHHHHHHHH
Q 009278 389 ADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQF 468 (538)
Q Consensus 389 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 468 (538)
..++..+|.++...|++++|+.++++++..+|.++.+++.+|.++..+|++++|+.+|+++++++|+++.++..++.++.
T Consensus 88 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 167 (198)
T 2fbn_A 88 ISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVN 167 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH
Confidence 36788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HccCHHHHH-HHHHHHhc
Q 009278 469 FLKEYDKAL-ETYQEGLK 485 (538)
Q Consensus 469 ~~g~~~~A~-~~~~~al~ 485 (538)
..++..++. ..|.+.+.
T Consensus 168 ~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 168 KLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp HHHHHHC-----------
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 999888877 44554443
No 156
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.63 E-value=7.6e-15 Score=114.92 Aligned_cols=119 Identities=39% Similarity=0.634 Sum_probs=114.2
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHHHhccCCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHHHHHh
Q 009278 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHL 81 (538)
Q Consensus 2 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 81 (538)
+..++..|..++..|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++..+|+++.+++.+|.++.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCHHHHHHHHHhhhhcCCCcHHHHhhHHHHHHHHhhc
Q 009278 82 GLQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASAS 120 (538)
Q Consensus 82 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 120 (538)
..|++++|+..|+++++.+|++..++..++.++...|+.
T Consensus 92 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999887653
No 157
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.63 E-value=1e-14 Score=113.16 Aligned_cols=121 Identities=31% Similarity=0.514 Sum_probs=113.5
Q ss_pred CCCc-hHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCchHHHHHH
Q 009278 385 DPKI-ADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRK 463 (538)
Q Consensus 385 ~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 463 (538)
+|.. ...+..+|.++...|++++|+..|++++...|.++.++..+|.++...|++++|+.++++++...|.++.++..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 83 (125)
T 1na0_A 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNL 83 (125)
T ss_dssp ---CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHH
Confidence 4544 788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhh
Q 009278 464 GAIQFFLKEYDKALETYQEGLKHDPQNQELLDGVRRCVQQIN 505 (538)
Q Consensus 464 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 505 (538)
|.++...|++++|+.+|++++..+|+++.++..++.++...|
T Consensus 84 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 84 GNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999987654
No 158
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.63 E-value=9e-15 Score=112.13 Aligned_cols=114 Identities=36% Similarity=0.653 Sum_probs=109.6
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCchHHHHHHHHHH
Q 009278 388 IADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQ 467 (538)
Q Consensus 388 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 467 (538)
.+..+..+|.++...|++++|+..|++++...|.++.++..+|.++...|++++|+..++++++.+|+++.++..+|.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHccCHHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 009278 468 FFLKEYDKALETYQEGLKHDPQNQELLDGVRRCV 501 (538)
Q Consensus 468 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 501 (538)
...|++++|...|+++++.+|+++.++..++.+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 9999999999999999999999999999888775
No 159
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.63 E-value=3.4e-15 Score=118.06 Aligned_cols=117 Identities=27% Similarity=0.388 Sum_probs=109.5
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHHHhccCCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHHHHHh
Q 009278 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHL 81 (538)
Q Consensus 2 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 81 (538)
++.++..|..++..|+|++|+..|++++..+|.++.+++.+|.++..+|++++|+..+++++.++|+++.+++.+|.++.
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 88 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL 88 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCHHHHHHHHHhhhhcCCC-----cHHHHhhHHHHHHHHh
Q 009278 82 GLQDYIEAVNSYKKGLDIDPN-----NEALKSGLADAKAAAS 118 (538)
Q Consensus 82 ~~~~~~~A~~~~~~al~~~p~-----~~~~~~~l~~~~~~~~ 118 (538)
..|++++|+..|+++++++|+ +..+...+..+.....
T Consensus 89 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~~ 130 (137)
T 3q49_B 89 EMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRW 130 (137)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988 6777777776665543
No 160
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.62 E-value=8.5e-15 Score=143.27 Aligned_cols=183 Identities=13% Similarity=0.081 Sum_probs=153.8
Q ss_pred HHHHHHHHHHHHHccccchhhHHHHHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHH
Q 009278 300 YEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELE 379 (538)
Q Consensus 300 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 379 (538)
.++|+..+++++..+|++ ..+|...+.++..+++ .... + .....+++++..++
T Consensus 45 ~eeal~~~~~~l~~nP~~-------~taW~~R~~~l~~l~~----~~~~-~---------------~~~~~~~~eL~~~~ 97 (567)
T 1dce_A 45 DESVLELTSQILGANPDF-------ATLWNCRREVLQHLET----EKSP-E---------------ESAALVKAELGFLE 97 (567)
T ss_dssp SHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHHHT----TSCH-H---------------HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCchh-------HHHHHHHHHHHHhccc----ccch-h---------------hhhhhHHHHHHHHH
Confidence 467899999999999999 5566666665555544 1000 0 00112334444555
Q ss_pred HHHHcCCCchHHHHHHHHHHHhcC--ChHHHHHHHHHHHhcCCCCchhHhHHHHHHHHhC-CchhHHHHHHHHHhcCCCc
Q 009278 380 QQEIFDPKIADEEREKGNEFFKQQ--KYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLG-AMPEGLKDADKCIELDPTF 456 (538)
Q Consensus 380 ~~~~~~~~~~~~~~~la~~~~~~~--~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~~~p~~ 456 (538)
+++..+|++..+|...+.++...+ ++++++..+.++++.+|.+..+|...+.+....| .++++++++.++++.+|.+
T Consensus 98 ~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n 177 (567)
T 1dce_A 98 SCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSN 177 (567)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCC
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCC
Confidence 555599999999999999999999 6799999999999999999999999999999999 8999999999999999999
Q ss_pred hHHHHHHHHHHHHc--------------cCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhcc
Q 009278 457 SKGYTRKGAIQFFL--------------KEYDKALETYQEGLKHDPQNQELLDGVRRCVQQINKAGR 509 (538)
Q Consensus 457 ~~~~~~l~~~~~~~--------------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~ 509 (538)
..+|..+|.++... +.+++|++++.+++.++|++..+|..++.++...++..+
T Consensus 178 ~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 178 YSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp HHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 99999999999885 678999999999999999999999999999999887555
No 161
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.62 E-value=7.5e-15 Score=132.71 Aligned_cols=175 Identities=14% Similarity=0.111 Sum_probs=136.1
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCChhHHH
Q 009278 287 LTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLK 366 (538)
Q Consensus 287 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 366 (538)
+...+..+...|++++|+..+++++...+..+.. ......+..+|.++...++ +++|+.+|++++...+...
T Consensus 78 l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~-~~~~~~~~~l~~~~~~~~~----~~~Ai~~~~~al~~~~~~~--- 149 (293)
T 3u3w_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEF-QQFLQWQYYVAAYVLKKVD----YEYCILELKKLLNQQLTGI--- 149 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHH-HHHHHHHHHHHHHHTTSSC----HHHHHHHHHHHHHTCCCCS---
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccccCChHH-HHHHHHHHHHHHHHHcccC----HHHHHHHHHHHHHHhcccc---
Confidence 3445677888899999999999998876655443 2334455567777777667 9999999999988433211
Q ss_pred hhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhcC-------CCCchhHhHHHHHHHHhCCc
Q 009278 367 KLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRN-------PKDPRTYSNRAACYTKLGAM 439 (538)
Q Consensus 367 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-------~~~~~~~~~la~~~~~~~~~ 439 (538)
.......++..+|.+|...|++++|+.+|+++++.. +....+++++|.+|..+|++
T Consensus 150 -----------------~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y 212 (293)
T 3u3w_A 150 -----------------DVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRY 212 (293)
T ss_dssp -----------------CTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred -----------------cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHH
Confidence 011124478999999999999999999999999531 22345889999999999999
Q ss_pred hhHHHHHHHHHhcCCCc------hHHHHHHHHHHHHcc-CHHHHHHHHHHHhcc
Q 009278 440 PEGLKDADKCIELDPTF------SKGYTRKGAIQFFLK-EYDKALETYQEGLKH 486 (538)
Q Consensus 440 ~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~ 486 (538)
++|+.++++++++.+.. +.+++.+|.++..+| ++++|+.+|++|+.+
T Consensus 213 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 213 EESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 99999999999875433 778999999999999 579999999999875
No 162
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.62 E-value=4.8e-12 Score=121.96 Aligned_cols=384 Identities=9% Similarity=-0.030 Sum_probs=245.8
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHHHhccCCcchHHHHHHHHHHHhcCC-HHHHHHHHHHHhcc---CCCchHHHHHHH
Q 009278 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHN-YADALADAKKTVEL---KPDWSKGYSRLG 77 (538)
Q Consensus 2 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~---~p~~~~~~~~la 77 (538)
|...+..+...+=.|+++.+...|++++...| +...|..........++ .+.....|+.++.. +|.+...|....
T Consensus 14 aR~vyer~l~~~P~~~~e~~~~iferal~~~p-s~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi 92 (493)
T 2uy1_A 14 PSAIMEHARRLYMSKDYRSLESLFGRCLKKSY-NLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYI 92 (493)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCC-CHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHH
Confidence 45677888888888999999999999999888 78888888777777663 45567788888864 788889999888
Q ss_pred HHHh----hccCHHHHHHHHHhhhhcCCCcHH-HHhhHHHHHHHHhhcccCCCCCCCCcccccccCCchhhcccCCCCCC
Q 009278 78 AAHL----GLQDYIEAVNSYKKGLDIDPNNEA-LKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTR 152 (538)
Q Consensus 78 ~~~~----~~~~~~~A~~~~~~al~~~p~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (538)
..+. ..|+.+.+...|++++..-+.+.+ .|..........+..
T Consensus 93 ~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~-------------------------------- 140 (493)
T 2uy1_A 93 EEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKI-------------------------------- 140 (493)
T ss_dssp HHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHH--------------------------------
T ss_pred HHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccc--------------------------------
Confidence 8765 357788999999999995333322 222222211111000
Q ss_pred CcccHHHHHHHHHhhhcCCCchhhhhchHHHHHHHHHHHhhhcCCCCCCCccccccccCCCCCCCccccccCCCCCCCCC
Q 009278 153 SYLDQDDFRNMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPE 232 (538)
Q Consensus 153 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (538)
......... .+....+...+....
T Consensus 141 ------~~~~~~~~~------------~~~y~~ar~~y~~~~-------------------------------------- 164 (493)
T 2uy1_A 141 ------TGKKIVGDT------------LPIFQSSFQRYQQIQ-------------------------------------- 164 (493)
T ss_dssp ------HHHHHHHHH------------HHHHHHHHHHHHHHH--------------------------------------
T ss_pred ------cHHHHHHHH------------hHHHHHHHHHHHHHH--------------------------------------
Confidence 000000000 000000000000000
Q ss_pred CccccHHHHHHHHhHH-HHHHHHHHHHHHHhc-------ccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHH
Q 009278 233 PMELTEEEKEAKERKE-KALKEKEAGNAAYKK-------KEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECI 304 (538)
Q Consensus 233 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-------~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~ 304 (538)
...+. ....|......-... +........|++++...|..+.+|...+..+...|+.++|.
T Consensus 165 -----------~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar 233 (493)
T 2uy1_A 165 -----------PLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAK 233 (493)
T ss_dssp -----------HHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred -----------HHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 00000 111233322222111 01456778999999999999999999999999999999999
Q ss_pred HHHHHHHHccccchhhHHHHHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHc
Q 009278 305 KDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIF 384 (538)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 384 (538)
..|++++.. |.+...+. ..+.. .+ .++. +.++........ .+.+ ....
T Consensus 234 ~i~erAi~~-P~~~~l~~-------~y~~~----~e----~~~~---~~~l~~~~~~~~-------~~~~------~~~~ 281 (493)
T 2uy1_A 234 KVVERGIEM-SDGMFLSL-------YYGLV----MD----EEAV---YGDLKRKYSMGE-------AESA------EKVF 281 (493)
T ss_dssp HHHHHHHHH-CCSSHHHH-------HHHHH----TT----CTHH---HHHHHHHTC-----------------------C
T ss_pred HHHHHHHhC-CCcHHHHH-------HHHhh----cc----hhHH---HHHHHHHHHhhc-------cchh------hhhc
Confidence 999999999 88743322 11110 01 1111 222221100000 0000 0001
Q ss_pred CCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHhHHHHHHHHhC-CchhHHHHHHHHHhcCCCchHHHHHH
Q 009278 385 DPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLG-AMPEGLKDADKCIELDPTFSKGYTRK 463 (538)
Q Consensus 385 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~l 463 (538)
.+....+|...+....+.++.+.|...|.++ ...+....+|...|.+-...+ +.+.|...|+.+++..|+.+..+...
T Consensus 282 ~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~y 360 (493)
T 2uy1_A 282 SKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEF 360 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 1123466778888888888999999999999 433334567777777766666 69999999999999999999888888
Q ss_pred HHHHHHccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhccCCCChHHHHHHHH
Q 009278 464 GAIQFFLKEYDKALETYQEGLKHDPQNQELLDGVRRCVQQINKAGRGELSPEELKERQA 522 (538)
Q Consensus 464 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 522 (538)
+......|+.+.|...|+++ +....+|..........|+...+...+++....+.
T Consensus 361 id~e~~~~~~~~aR~l~er~----~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~~~~ 415 (493)
T 2uy1_A 361 FLFLLRIGDEENARALFKRL----EKTSRMWDSMIEYEFMVGSMELFRELVDQKMDAIK 415 (493)
T ss_dssp HHHHHHHTCHHHHHHHHHHS----CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhc
Confidence 88888999999999999998 45688888888888888888777666665555554
No 163
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.61 E-value=2.3e-14 Score=117.45 Aligned_cols=134 Identities=19% Similarity=0.264 Sum_probs=122.5
Q ss_pred HHHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhc
Q 009278 323 MIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQ 402 (538)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~ 402 (538)
..+..+..+|.++...++ +++|+..|++++. .+|.++.++..+|.++...
T Consensus 11 ~~~~~~~~~a~~~~~~~~----~~~A~~~~~~al~--------------------------~~~~~~~~~~~~a~~~~~~ 60 (166)
T 1a17_A 11 KRAEELKTQANDYFKAKD----YENAIKFYSQAIE--------------------------LNPSNAIYYGNRSLAYLRT 60 (166)
T ss_dssp HHHHHHHHHHHHHHHTTC----HHHHHHHHHHHHH--------------------------HSTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHccC----HHHHHHHHHHHHH--------------------------hCCCChHHHHHHHHHHHHc
Confidence 347788889999998888 9999999999998 7888999999999999999
Q ss_pred CChHHHHHHHHHHHhcCCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCchHHHHHHH--HHHHHccCHHHHHHHH
Q 009278 403 QKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKG--AIQFFLKEYDKALETY 480 (538)
Q Consensus 403 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~--~~~~~~g~~~~A~~~~ 480 (538)
|++++|+..|++++..+|.++.+++.+|.++...|++++|+.+|+++++.+|+++.++..++ ..+...|++++|+..+
T Consensus 61 ~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 140 (166)
T 1a17_A 61 ECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGD 140 (166)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 99999999999999999999999999999999999999999999999999999998885554 4488899999999999
Q ss_pred HHHhcc
Q 009278 481 QEGLKH 486 (538)
Q Consensus 481 ~~al~~ 486 (538)
.++..+
T Consensus 141 ~~~~~~ 146 (166)
T 1a17_A 141 EHKRSV 146 (166)
T ss_dssp HHHHHH
T ss_pred cchHHH
Confidence 987654
No 164
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.61 E-value=2e-14 Score=129.91 Aligned_cols=180 Identities=13% Similarity=0.128 Sum_probs=146.2
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHH------HHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHH
Q 009278 249 KALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDIS------YLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFK 322 (538)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~------~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 322 (538)
....+...+..+...|++++|+..+++++...+..+. .+..+|.++...|++++|+.++++++...+......
T Consensus 74 ~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~- 152 (293)
T 3u3w_A 74 RKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVY- 152 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTT-
T ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHH-
Confidence 3445556688899999999999999999998877654 334588899889999999999999999766543332
Q ss_pred HHHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhc
Q 009278 323 MIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQ 402 (538)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~ 402 (538)
..+.++..+|.++...++ +++|+.+|++++.... ......+....++.++|.+|...
T Consensus 153 ~~~~~~~~lg~~y~~~g~----~~~A~~~~~~al~~~~-------------------~~~~~~~~~~~~~~nlg~~y~~~ 209 (293)
T 3u3w_A 153 QNLYIENAIANIYAENGY----LKKGIDLFEQILKQLE-------------------ALHDNEEFDVKVRYNHAKALYLD 209 (293)
T ss_dssp HHHHHHHHHHHHHHHTTC----HHHHHHHHHHHHHHHH-------------------HSSCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCC----HHHHHHHHHHHHHHHH-------------------hcccchhHHHHHHHHHHHHHHHH
Confidence 346789999999999999 9999999999996211 00002234566889999999999
Q ss_pred CChHHHHHHHHHHHhcCCCC------chhHhHHHHHHHHhCC-chhHHHHHHHHHhc
Q 009278 403 QKYPEAIQHYTESLRRNPKD------PRTYSNRAACYTKLGA-MPEGLKDADKCIEL 452 (538)
Q Consensus 403 ~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~~~-~~~A~~~~~~al~~ 452 (538)
|++++|+.++++++++.+.. +.+++.+|.+|..+|+ +++|+.+|++++.+
T Consensus 210 ~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 210 SRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 99999999999999876433 6789999999999995 69999999999976
No 165
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.61 E-value=8.2e-14 Score=119.47 Aligned_cols=151 Identities=19% Similarity=0.247 Sum_probs=122.8
Q ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHHHH
Q 009278 248 EKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARA 327 (538)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 327 (538)
.....++.+|..+...|++++|+..|++++ +| ++.++..+|.++...|++++|+..|++++..+|++ ..+
T Consensus 4 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-------~~~ 73 (213)
T 1hh8_A 4 VEAISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHL-------AVA 73 (213)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc-------hHH
Confidence 456678899999999999999999999996 33 78899999999999999999999999999999988 677
Q ss_pred HHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCChhH--HHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcCCh
Q 009278 328 LTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDT--LKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKY 405 (538)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 405 (538)
+..+|.++...++ +++|+..|++++...|.... +...+ ....|..+.+++.+|.++...|++
T Consensus 74 ~~~lg~~~~~~~~----~~~A~~~~~~al~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~l~~~~~~~g~~ 137 (213)
T 1hh8_A 74 YFQRGMLYYQTEK----YDLAIKDLKEALIQLRGNQLIDYKILG------------LQFKLFACEVLYNIAFMYAKKEEW 137 (213)
T ss_dssp HHHHHHHHHHTTC----HHHHHHHHHHHHHTTTTCSEEECGGGT------------BCCEEEHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHccc----HHHHHHHHHHHHHhCCCccHHHHHHhc------------cccCccchHHHHHHHHHHHHccCH
Confidence 8888888888888 99999999999995443110 00000 002234458889999999999999
Q ss_pred HHHHHHHHHHHhcCCCCch
Q 009278 406 PEAIQHYTESLRRNPKDPR 424 (538)
Q Consensus 406 ~~A~~~~~~al~~~~~~~~ 424 (538)
++|+..|+++++..|++..
T Consensus 138 ~~A~~~~~~al~~~p~~~~ 156 (213)
T 1hh8_A 138 KKAEEQLALATSMKSEPRH 156 (213)
T ss_dssp HHHHHHHHHHHTTCCSGGG
T ss_pred HHHHHHHHHHHHcCccccc
Confidence 9999999999999887643
No 166
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=1.3e-14 Score=116.41 Aligned_cols=119 Identities=27% Similarity=0.332 Sum_probs=113.1
Q ss_pred cCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC---chhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCchHHH
Q 009278 384 FDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKD---PRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGY 460 (538)
Q Consensus 384 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 460 (538)
.+|.....+..+|..+...|++++|+..|+++++..|++ ..++..+|.++...|++++|+.++++++..+|+++.++
T Consensus 23 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 102 (148)
T 2dba_A 23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKAL 102 (148)
T ss_dssp TTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHH
T ss_pred cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHH
Confidence 457889999999999999999999999999999999987 89999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Q 009278 461 TRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDGVRRCVQ 502 (538)
Q Consensus 461 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 502 (538)
+.+|.++...|++++|+.+|++++.++|++..++..+..+..
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 999999999999999999999999999999999988877653
No 167
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.59 E-value=1.5e-14 Score=113.18 Aligned_cols=121 Identities=24% Similarity=0.415 Sum_probs=112.8
Q ss_pred CchHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCc-------hHH
Q 009278 387 KIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTF-------SKG 459 (538)
Q Consensus 387 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~ 459 (538)
..+..+..+|.++...|++++|+.+|++++...|.++.++..+|.++...|++++|+.++++++...|.+ +.+
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 81 (131)
T 1elr_A 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA 81 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence 3467889999999999999999999999999999999999999999999999999999999999998877 889
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhc
Q 009278 460 YTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDGVRRCVQQINKAG 508 (538)
Q Consensus 460 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 508 (538)
++.+|.++...|++++|+.+|++++...| ++.+...++.+...+++..
T Consensus 82 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~ 129 (131)
T 1elr_A 82 YARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKEQE 129 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999 6999999999988877653
No 168
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.59 E-value=2.1e-14 Score=112.09 Aligned_cols=115 Identities=16% Similarity=0.089 Sum_probs=105.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCc---hhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCc---hHHHHHHH
Q 009278 391 EEREKGNEFFKQQKYPEAIQHYTESLRRNPKDP---RTYSNRAACYTKLGAMPEGLKDADKCIELDPTF---SKGYTRKG 464 (538)
Q Consensus 391 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~---~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~ 464 (538)
.++.+|.+++..|++++|+..|++++...|+++ .+++.+|.++...|++++|+..|++++..+|++ +.+++.+|
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la 83 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG 83 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence 467899999999999999999999999999988 799999999999999999999999999999999 88899999
Q ss_pred HHHHHccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhh
Q 009278 465 AIQFFLKEYDKALETYQEGLKHDPQNQELLDGVRRCVQQIN 505 (538)
Q Consensus 465 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 505 (538)
.++..+|++++|+..|++++...|+++.+......+....+
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l~~ 124 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSIRL 124 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHC-
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHh
Confidence 99999999999999999999999999988776666554433
No 169
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.59 E-value=2.3e-14 Score=118.92 Aligned_cols=130 Identities=14% Similarity=0.151 Sum_probs=102.6
Q ss_pred HHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHHHHHHHhHHH-HHHh
Q 009278 260 AYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTA-LVKM 338 (538)
Q Consensus 260 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 338 (538)
+...|++++|+..+++++..+|.++.++..+|.++...|++++|+.+|++++..+|++ ..++..+|.+ +...
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~la~~l~~~~ 92 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGEN-------AELYAALATVLYYQA 92 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSC-------HHHHHHHHHHHHHHT
T ss_pred hhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-------HHHHHHHHHHHHHhc
Confidence 4567899999999999999999999999999999999999999999999999999887 4556666666 5555
Q ss_pred hhcccCh--hHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 009278 339 AKCSKDY--EPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESL 416 (538)
Q Consensus 339 ~~~~~~~--~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 416 (538)
++ + ++|+..+++++. .+|.++.++..+|.++...|++++|+..|++++
T Consensus 93 ~~----~~~~~A~~~~~~al~--------------------------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 142 (177)
T 2e2e_A 93 SQ----HMTAQTRAMIDKALA--------------------------LDSNEITALMLLASDAFMQANYAQAIELWQKVM 142 (177)
T ss_dssp TT----CCCHHHHHHHHHHHH--------------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CC----cchHHHHHHHHHHHH--------------------------hCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 56 7 777777777777 677777788888888888888888888888888
Q ss_pred hcCCCCchhH
Q 009278 417 RRNPKDPRTY 426 (538)
Q Consensus 417 ~~~~~~~~~~ 426 (538)
..+|.++...
T Consensus 143 ~~~p~~~~~~ 152 (177)
T 2e2e_A 143 DLNSPRINRT 152 (177)
T ss_dssp HTCCTTSCHH
T ss_pred hhCCCCccHH
Confidence 8887765543
No 170
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.59 E-value=3.7e-14 Score=109.91 Aligned_cols=116 Identities=33% Similarity=0.526 Sum_probs=110.9
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHHHhccCCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHHHHHh
Q 009278 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHL 81 (538)
Q Consensus 2 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 81 (538)
+..++..|..+...|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++..+|.++.++..+|.++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCHHHHHHHHHhhhhcCCCcHHHHhhHHHHHHHH
Q 009278 82 GLQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAA 117 (538)
Q Consensus 82 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 117 (538)
..|++++|+..|+++++.+|+++.++..++.++...
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc
Confidence 999999999999999999999999999998887654
No 171
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=3.1e-14 Score=114.13 Aligned_cols=113 Identities=27% Similarity=0.426 Sum_probs=107.9
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHHHhccCCcc---hHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHHH
Q 009278 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDN---HVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGA 78 (538)
Q Consensus 2 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 78 (538)
++.++..|..++..|+|++|+..|++++..+|++ ..+++.+|.++...|++++|+..+++++..+|+++.+++.+|.
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 107 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQ 107 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHH
Confidence 5678999999999999999999999999999998 8999999999999999999999999999999999999999999
Q ss_pred HHhhccCHHHHHHHHHhhhhcCCCcHHHHhhHHHHH
Q 009278 79 AHLGLQDYIEAVNSYKKGLDIDPNNEALKSGLADAK 114 (538)
Q Consensus 79 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 114 (538)
++...|++++|+..|++++.++|++..++..+..+.
T Consensus 108 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 108 ALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 999999999999999999999999999888777663
No 172
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.57 E-value=1.3e-14 Score=110.09 Aligned_cols=107 Identities=10% Similarity=0.131 Sum_probs=103.2
Q ss_pred CCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCC--chHHHHH
Q 009278 385 DPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPT--FSKGYTR 462 (538)
Q Consensus 385 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~ 462 (538)
+|+++.++..+|.++...|++++|+..|+++++..|.++.++..+|.++...|++++|+.+++++++.+|. ++.++..
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 81 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA 81 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence 67888899999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred HHHHHHHc-cCHHHHHHHHHHHhccCCCCH
Q 009278 463 KGAIQFFL-KEYDKALETYQEGLKHDPQNQ 491 (538)
Q Consensus 463 l~~~~~~~-g~~~~A~~~~~~al~~~p~~~ 491 (538)
+|.++... |++++|+.++++++...|.++
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 99999999 999999999999999999864
No 173
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.56 E-value=1.5e-13 Score=116.84 Aligned_cols=179 Identities=13% Similarity=0.111 Sum_probs=138.4
Q ss_pred HhhcCCHHHHHHHHHHHhccCCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhc------cCCCchHHHHHHHHHHhhccC
Q 009278 12 AFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVE------LKPDWSKGYSRLGAAHLGLQD 85 (538)
Q Consensus 12 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~------~~p~~~~~~~~la~~~~~~~~ 85 (538)
++..|+|++|...++......+..+.++..+|.++...|++++|+..+++++. ..|....++..+|.++...|+
T Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp -----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred ccccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 46789999999966655554446789999999999999999999999999998 455667899999999999999
Q ss_pred HHHHHHHHHhhhhc---CCCcHHHHhhHHHHHHHHhhcccCCCCCCCCcccccccCCchhhcccCCCCCCCcccHHHHHH
Q 009278 86 YIEAVNSYKKGLDI---DPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRN 162 (538)
Q Consensus 86 ~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (538)
+++|+..+++++.+ .++++
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~---------------------------------------------------------- 103 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDP---------------------------------------------------------- 103 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCH----------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHcCccH----------------------------------------------------------
Confidence 99999999999876 22111
Q ss_pred HHHhhhcCCCchhhhhchHHHHHHHHHHHhhhcCCCCCCCccccccccCCCCCCCccccccCCCCCCCCCCccccHHHHH
Q 009278 163 MMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKE 242 (538)
Q Consensus 163 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (538)
T Consensus 104 -------------------------------------------------------------------------------- 103 (203)
T 3gw4_A 104 -------------------------------------------------------------------------------- 103 (203)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCC--C----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHcccc
Q 009278 243 AKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDE--D----ISYLTNRAAVYLEMGKYEECIKDCDKAVERGRE 316 (538)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 316 (538)
...+.++..+|.++...|++++|+.++++++...+. + ..++..+|.++...|++++|+.++++++.+...
T Consensus 104 ----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 179 (203)
T 3gw4_A 104 ----LAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAE 179 (203)
T ss_dssp ----HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 124456778899999999999999999999976432 2 345689999999999999999999999997665
Q ss_pred chhhHHHHHHHHHHhHH
Q 009278 317 LRSDFKMIARALTRKGT 333 (538)
Q Consensus 317 ~~~~~~~~~~~~~~~~~ 333 (538)
..... ..+.+...++.
T Consensus 180 ~~~~~-~~~~~~~~~~~ 195 (203)
T 3gw4_A 180 LEDSE-AVNELMTRLNG 195 (203)
T ss_dssp TTCHH-HHHHHHHHHHT
T ss_pred cCCHH-HHHHHHhcccc
Confidence 43322 22444444443
No 174
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.56 E-value=7.5e-15 Score=134.94 Aligned_cols=112 Identities=23% Similarity=0.327 Sum_probs=93.9
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHHHhccCCcch-----------------HHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 009278 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNH-----------------VLYSNRSAAHASLHNYADALADAKKTVE 64 (538)
Q Consensus 2 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~-----------------~~~~~la~~~~~~g~~~~A~~~~~~al~ 64 (538)
++.++.+|..++..|+|++|+..|++++...|.+. .+++++|.|+..+|++++|+..|++++.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 258 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLT 258 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999877 4999999999999999999999999999
Q ss_pred cCCCchHHHHHHHHHHhhccCHHHHHHHHHhhhhcCCCcHHHHhhHHHH
Q 009278 65 LKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNEALKSGLADA 113 (538)
Q Consensus 65 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 113 (538)
++|+++.+++.+|.+|..+|++++|+..|+++++++|++..++..++.+
T Consensus 259 ~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l 307 (338)
T 2if4_A 259 EEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRAL 307 (338)
T ss_dssp HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998887766554
No 175
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.55 E-value=8.1e-15 Score=114.17 Aligned_cols=103 Identities=12% Similarity=0.143 Sum_probs=94.1
Q ss_pred HhhcCCHHHHHHHHHHHhccCCcchHHHHHHHHHHHhcCCH----------HHHHHHHHHHhccCCCchHHHHHHHHHHh
Q 009278 12 AFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNY----------ADALADAKKTVELKPDWSKGYSRLGAAHL 81 (538)
Q Consensus 12 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~----------~~A~~~~~~al~~~p~~~~~~~~la~~~~ 81 (538)
.-+.+.|++|+..|+++++.+|+++.+|+++|.++..++++ ++|+..|+++++++|++..+|+.+|.+|.
T Consensus 12 ~~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 12 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence 34567899999999999999999999999999999999875 59999999999999999999999999999
Q ss_pred hcc-----------CHHHHHHHHHhhhhcCCCcHHHHhhHHHHH
Q 009278 82 GLQ-----------DYIEAVNSYKKGLDIDPNNEALKSGLADAK 114 (538)
Q Consensus 82 ~~~-----------~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 114 (538)
.+| ++++|+.+|++|++++|++...+..+..+-
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~~ 135 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTA 135 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 885 899999999999999999988877665543
No 176
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.55 E-value=1.2e-14 Score=113.16 Aligned_cols=97 Identities=15% Similarity=0.291 Sum_probs=60.3
Q ss_pred CChHHHHHHHHHHHhcCCCCchhHhHHHHHHHHhCC----------chhHHHHHHHHHhcCCCchHHHHHHHHHHHHc--
Q 009278 403 QKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGA----------MPEGLKDADKCIELDPTFSKGYTRKGAIQFFL-- 470 (538)
Q Consensus 403 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~----------~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-- 470 (538)
+.|++|+..++++++++|+++.+|+++|.++...++ +++|+..|+++++++|+++.+|+++|.+|..+
T Consensus 16 ~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~ 95 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAF 95 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcc
Confidence 344445555555555555555555555555444444 34666666666666666666666666666665
Q ss_pred ---------cCHHHHHHHHHHHhccCCCCHHHHHHHHH
Q 009278 471 ---------KEYDKALETYQEGLKHDPQNQELLDGVRR 499 (538)
Q Consensus 471 ---------g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 499 (538)
|++++|+.+|++|++++|++...+..+..
T Consensus 96 l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~ 133 (158)
T 1zu2_A 96 LTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEM 133 (158)
T ss_dssp HCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 47888888888888888887766555443
No 177
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.55 E-value=5.9e-14 Score=109.80 Aligned_cols=118 Identities=23% Similarity=0.377 Sum_probs=110.2
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHHHhccCCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCc-------hHHHH
Q 009278 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDW-------SKGYS 74 (538)
Q Consensus 2 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~ 74 (538)
++.++..|..++..|++++|+..|++++..+|.++.+++.+|.++...|++++|+..+++++...|++ +.+++
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999877 88999
Q ss_pred HHHHHHhhccCHHHHHHHHHhhhhcCCCcHHHHhhHHHHHHHHhhc
Q 009278 75 RLGAAHLGLQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASAS 120 (538)
Q Consensus 75 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 120 (538)
.+|.++...|++++|+..|+++++..| ++.....++.+....+..
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~ 128 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKEQ 128 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999 588888888887776543
No 178
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.55 E-value=3.4e-14 Score=136.32 Aligned_cols=119 Identities=24% Similarity=0.362 Sum_probs=110.9
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHHHhccCCcc---------------hHHHHHHHHHHHhcCCHHHHHHHHHHHhccC
Q 009278 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDN---------------HVLYSNRSAAHASLHNYADALADAKKTVELK 66 (538)
Q Consensus 2 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 66 (538)
+..++.+|..++..|+|++|+..|++++..+|.+ ..+++++|.|+..+|++++|+..|++++.++
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 4678999999999999999999999999999988 6999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHhhccCHHHHHHHHHhhhhcCCCcHHHHhhHHHHHHHHhhc
Q 009278 67 PDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASAS 120 (538)
Q Consensus 67 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 120 (538)
|+++.+++.+|.+|..+|++++|+..|+++++++|++..++..++.++...++.
T Consensus 348 p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~ 401 (457)
T 1kt0_A 348 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEH 401 (457)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999988775
No 179
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.54 E-value=1.3e-14 Score=110.98 Aligned_cols=109 Identities=9% Similarity=0.109 Sum_probs=92.4
Q ss_pred hcCChHHHHHHHHHHHhc---CCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCchHHHHHHHHHHHHccCHHHHH
Q 009278 401 KQQKYPEAIQHYTESLRR---NPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKAL 477 (538)
Q Consensus 401 ~~~~~~~A~~~~~~al~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 477 (538)
..|++++|+..|+++++. +|+++.++..+|.++..+|++++|+.+|+++++.+|+++.+++.+|.++...|++++|+
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 368899999999999999 58888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCCHHHHHHHHHHHHHhhhhcc
Q 009278 478 ETYQEGLKHDPQNQELLDGVRRCVQQINKAGR 509 (538)
Q Consensus 478 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~ 509 (538)
..|++++...|+++.+......+....+..++
T Consensus 82 ~~~~~al~~~p~~~~~~~~~~ai~~~~~~l~~ 113 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQSYKQAILFYADKLDE 113 (117)
T ss_dssp HHHHHHHHHHCCCHHHHHTHHHHHHHTTCTTC
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999887666655555554443
No 180
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.54 E-value=1.1e-13 Score=133.02 Aligned_cols=212 Identities=8% Similarity=0.056 Sum_probs=175.0
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHHHhccCCcch-----------------HHHHHHHHHHHhcCCHHHHHHHHHHHhcc
Q 009278 3 DEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNH-----------------VLYSNRSAAHASLHNYADALADAKKTVEL 65 (538)
Q Consensus 3 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~-----------------~~~~~la~~~~~~g~~~~A~~~~~~al~~ 65 (538)
.+.+..|..+...|+|++|++.|.++++..|... .++..+|.+|...|++++|++.+.+++..
T Consensus 5 ~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~ 84 (434)
T 4b4t_Q 5 GSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEY 84 (434)
T ss_dssp THHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 4678899999999999999999999999888643 35889999999999999999999999887
Q ss_pred CCCch------HHHHHHHHHHhhccCHHHHHHHHHhhhhcCCCcHHHHhhHHHHHHHHhhcccCCCCCCCCcccccccCC
Q 009278 66 KPDWS------KGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGP 139 (538)
Q Consensus 66 ~p~~~------~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (538)
.+... .+...+|.++...|++++|+..+++++...+....
T Consensus 85 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---------------------------------- 130 (434)
T 4b4t_Q 85 MMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKR---------------------------------- 130 (434)
T ss_dssp HHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSC----------------------------------
T ss_pred HHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCc----------------------------------
Confidence 65432 34566888888999999999999988764221100
Q ss_pred chhhcccCCCCCCCcccHHHHHHHHHhhhcCCCchhhhhchHHHHHHHHHHHhhhcCCCCCCCccccccccCCCCCCCcc
Q 009278 140 EMWAKLTADPTTRSYLDQDDFRNMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSK 219 (538)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (538)
T Consensus 131 -------------------------------------------------------------------------------- 130 (434)
T 4b4t_Q 131 -------------------------------------------------------------------------------- 130 (434)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCCCCCCCCCccccHHHHHHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhh------CCCCHHHHHHHHHH
Q 009278 220 EETRKPESEPEPEPMELTEEEKEAKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALEL------DDEDISYLTNRAAV 293 (538)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~la~~ 293 (538)
....+.++..+|.++...|+|++|+.++++++.. .|....++..+|.+
T Consensus 131 --------------------------~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (434)
T 4b4t_Q 131 --------------------------VFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKV 184 (434)
T ss_dssp --------------------------CSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHH
T ss_pred --------------------------cHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHH
Confidence 0024566788899999999999999999999875 23346789999999
Q ss_pred HHHhCCHHHHHHHHHHHHHccccchhhHHHHHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhc
Q 009278 294 YLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTE 358 (538)
Q Consensus 294 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 358 (538)
|...|++++|..++++++...+.........+..+...|.++...++ +.+|..+|..++..
T Consensus 185 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~----y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 185 YHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKD----YKTAFSYFFESFES 245 (434)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSC----HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHh----HHHHHHHHHHHHHH
Confidence 99999999999999999998776665555668888999998888888 99999999999873
No 181
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.54 E-value=9.4e-15 Score=140.72 Aligned_cols=125 Identities=28% Similarity=0.522 Sum_probs=116.0
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCchHHHHHHHHHHH
Q 009278 389 ADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQF 468 (538)
Q Consensus 389 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 468 (538)
+..+..+|.++...|++++|+..|+++++.+|.++.++.++|.++..+|++++|+..++++++++|+++.+++++|.++.
T Consensus 6 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~ 85 (477)
T 1wao_1 6 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 85 (477)
T ss_dssp HTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 44566788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HccCHHHHHHHHHHHhccCCCCHHHHHHHHHH--HHHhhhhccCCCC
Q 009278 469 FLKEYDKALETYQEGLKHDPQNQELLDGVRRC--VQQINKAGRGELS 513 (538)
Q Consensus 469 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~--~~~~~~~~~a~~~ 513 (538)
.+|++++|+..|+++++++|++..++..++.+ +...|++++|...
T Consensus 86 ~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~ 132 (477)
T 1wao_1 86 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG 132 (477)
T ss_dssp HHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC---
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999998 8888999999855
No 182
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.52 E-value=1.9e-14 Score=109.98 Aligned_cols=103 Identities=18% Similarity=0.099 Sum_probs=91.2
Q ss_pred hcCCHHHHHHHHHHHhcc---CCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHHHHHhhccCHHHHH
Q 009278 14 SSGDYEAAVRHFTEAISL---SPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAV 90 (538)
Q Consensus 14 ~~g~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~ 90 (538)
..|++++|+..|+++++. +|+++.+++.+|.++..+|++++|+..|+++++.+|+++.+++.+|.++...|++++|+
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 468999999999999999 68999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhcCCCcHHHHhhHHHHHHH
Q 009278 91 NSYKKGLDIDPNNEALKSGLADAKAA 116 (538)
Q Consensus 91 ~~~~~al~~~p~~~~~~~~l~~~~~~ 116 (538)
..|++++...|+++........+...
T Consensus 82 ~~~~~al~~~p~~~~~~~~~~ai~~~ 107 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQSYKQAILFY 107 (117)
T ss_dssp HHHHHHHHHHCCCHHHHHTHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 99999999999998876655444333
No 183
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.52 E-value=8.2e-14 Score=129.27 Aligned_cols=119 Identities=24% Similarity=0.427 Sum_probs=114.2
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHHHhc----------------cCCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhcc
Q 009278 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAIS----------------LSPDNHVLYSNRSAAHASLHNYADALADAKKTVEL 65 (538)
Q Consensus 2 a~~~~~~g~~~~~~g~~~~A~~~~~~al~----------------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 65 (538)
++.+..+|..++..|+|++|+..|+++++ .+|.+..++.++|.++..+|++++|+.++++++++
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 46789999999999999999999999998 78888999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHhhccCHHHHHHHHHhhhhcCCCcHHHHhhHHHHHHHHhhc
Q 009278 66 KPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASAS 120 (538)
Q Consensus 66 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 120 (538)
+|+++.+++.+|.+|..+|++++|+..|+++++++|++..++..++.++...++.
T Consensus 303 ~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~ 357 (370)
T 1ihg_A 303 DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQ 357 (370)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999888765
No 184
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.52 E-value=6.2e-14 Score=106.22 Aligned_cols=103 Identities=17% Similarity=0.229 Sum_probs=98.7
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHHHhccCCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC--chHHHHHHHHH
Q 009278 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPD--WSKGYSRLGAA 79 (538)
Q Consensus 2 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~ 79 (538)
++.++.+|.+++..|++++|+..|++++..+|.++.+++.+|.++...|++++|+..+++++..+|+ +..++..+|.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 3567889999999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred Hhhc-cCHHHHHHHHHhhhhcCCCcH
Q 009278 80 HLGL-QDYIEAVNSYKKGLDIDPNNE 104 (538)
Q Consensus 80 ~~~~-~~~~~A~~~~~~al~~~p~~~ 104 (538)
+... |++++|+..+++++...|.++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 9999 999999999999999999764
No 185
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.52 E-value=5.9e-14 Score=130.21 Aligned_cols=123 Identities=27% Similarity=0.414 Sum_probs=116.8
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHHh----------------cCCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhc
Q 009278 389 ADEEREKGNEFFKQQKYPEAIQHYTESLR----------------RNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIEL 452 (538)
Q Consensus 389 ~~~~~~la~~~~~~~~~~~A~~~~~~al~----------------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 452 (538)
...+..+|..++..|++++|+..|+++++ ..|.+..++.++|.++..+|++++|+.++++++++
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 45688899999999999999999999998 77778899999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHHHccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhccCC
Q 009278 453 DPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDGVRRCVQQINKAGRGE 511 (538)
Q Consensus 453 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~ 511 (538)
+|+++.+++.+|.++..+|++++|+.+|+++++++|++..++..++.++..+++..++.
T Consensus 303 ~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 303 DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999887664
No 186
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.51 E-value=1.7e-13 Score=131.70 Aligned_cols=210 Identities=12% Similarity=0.091 Sum_probs=169.0
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCH-----------------HHHHHHHHHHHHhCCHHHHHHHHHHHHHcc
Q 009278 252 KEKEAGNAAYKKKEFEKAIEHYSSALELDDEDI-----------------SYLTNRAAVYLEMGKYEECIKDCDKAVERG 314 (538)
Q Consensus 252 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-----------------~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 314 (538)
.....|..+...|+|++|++.|.++++..|... .++..+|.+|...|++++|+.++.+++...
T Consensus 6 ~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~ 85 (434)
T 4b4t_Q 6 SKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYM 85 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 356678889999999999999999999887642 368899999999999999999999999987
Q ss_pred ccchhhHHHHHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHH
Q 009278 315 RELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEERE 394 (538)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 394 (538)
+...... ....+...+|.++...+. +++|+..+++++...+. ....+....++..
T Consensus 86 ~~~~~~~-~~~~~~~~l~~~~~~~~~----~~~a~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~ 140 (434)
T 4b4t_Q 86 MQFAKSK-TVKVLKTLIEKFEQVPDS----LDDQIFVCEKSIEFAKR--------------------EKRVFLKHSLSIK 140 (434)
T ss_dssp HTSCHHH-HHHHHHHHHHHHCSCCSC----HHHHHHHHHHHHHHHHH--------------------SSCCSSHHHHHHH
T ss_pred HHccchH-HHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHHHHH--------------------hCccHHHHHHHHH
Confidence 7654332 224455666776666666 99999999988873211 1134456778899
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCC------CCchhHhHHHHHHHHhCCchhHHHHHHHHHhcCC---Cc----hHHHH
Q 009278 395 KGNEFFKQQKYPEAIQHYTESLRRNP------KDPRTYSNRAACYTKLGAMPEGLKDADKCIELDP---TF----SKGYT 461 (538)
Q Consensus 395 la~~~~~~~~~~~A~~~~~~al~~~~------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p---~~----~~~~~ 461 (538)
+|.++...|+|++|+.++++++.... ....++..+|.+|...|++++|..++++++...+ .. ...+.
T Consensus 141 la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 220 (434)
T 4b4t_Q 141 LATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDL 220 (434)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHH
Confidence 99999999999999999999886522 2356899999999999999999999999987632 22 34677
Q ss_pred HHHHHHHHccCHHHHHHHHHHHhcc
Q 009278 462 RKGAIQFFLKEYDKALETYQEGLKH 486 (538)
Q Consensus 462 ~l~~~~~~~g~~~~A~~~~~~al~~ 486 (538)
.+|.++...|++.+|..+|.+++..
T Consensus 221 ~~g~~~~~~~~y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 221 MSGILHCEDKDYKTAFSYFFESFES 245 (434)
T ss_dssp HHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 8899999999999999999999874
No 187
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.50 E-value=5.8e-14 Score=129.04 Aligned_cols=155 Identities=19% Similarity=0.210 Sum_probs=92.0
Q ss_pred HHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcCC
Q 009278 325 ARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQK 404 (538)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 404 (538)
+..+..+|..+...++ +++|+..|++++...+....+...++..++...+. ..+++++|.++...|+
T Consensus 179 a~~~~~~g~~~~~~g~----~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~---------~~~~~nla~~~~~~g~ 245 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEK----LEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVK---------NPCHLNIAACLIKLKR 245 (338)
T ss_dssp HHHHHHHHHHTCSSSC----CHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHH---------THHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHhcCC----HHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHH---------HHHHHHHHHHHHHcCC
Confidence 6778888988888888 99999999999997776555555555555544331 2477888888888888
Q ss_pred hHHHHHHHHHHHhcCCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCchHHHHHHHHHH-HHccCHHHHHHHHHHH
Q 009278 405 YPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQ-FFLKEYDKALETYQEG 483 (538)
Q Consensus 405 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~-~~~g~~~~A~~~~~~a 483 (538)
+++|+..|++++.++|+++.+++++|.+|..+|++++|+.+|+++++++|+++.++..++.+. ...+..+.+...|.++
T Consensus 246 ~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~ 325 (338)
T 2if4_A 246 YDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGI 325 (338)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------------
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 888888888888888888888888888888888888888888888888888888888888874 4456777888888888
Q ss_pred hccCCCCHH
Q 009278 484 LKHDPQNQE 492 (538)
Q Consensus 484 l~~~p~~~~ 492 (538)
+...|+++.
T Consensus 326 l~~~p~~~~ 334 (338)
T 2if4_A 326 FKGKDEGGA 334 (338)
T ss_dssp ---------
T ss_pred hCCCCCCCC
Confidence 888887653
No 188
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.48 E-value=3e-14 Score=137.15 Aligned_cols=135 Identities=19% Similarity=0.298 Sum_probs=114.7
Q ss_pred HHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcCCh
Q 009278 326 RALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKY 405 (538)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 405 (538)
..+..+|..+...++ +++|+..|+++++ .+|.++.++..+|.++...|++
T Consensus 7 ~~~~~lg~~~~~~g~----~~~A~~~~~~Al~--------------------------~~p~~~~~~~~lg~~~~~~g~~ 56 (477)
T 1wao_1 7 EELKTQANDYFKAKD----YENAIKFYSQAIE--------------------------LNPSNAIYYGNRSLAYLRTECY 56 (477)
T ss_dssp TTSSSSSSSTTTTTC----HHHHHHHHHHHHH--------------------------HCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHhCC----HHHHHHHHHHHHH--------------------------hCCccHHHHHHHHHHHHHhcCH
Confidence 344455555555555 6666666666666 8999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCchHHHHHHHHH--HHHccCHHHHHHHHH--
Q 009278 406 PEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAI--QFFLKEYDKALETYQ-- 481 (538)
Q Consensus 406 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~-- 481 (538)
++|+..|+++++++|.++.+++++|.+|..+|++++|+..|+++++++|+++.++..++.+ +...|++++|++.++
T Consensus 57 ~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~ 136 (477)
T 1wao_1 57 GYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 136 (477)
T ss_dssp HHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------C
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 9999999999999999999999999999999999999999999999999999999999998 889999999999999
Q ss_pred ---------HHhccCCCC
Q 009278 482 ---------EGLKHDPQN 490 (538)
Q Consensus 482 ---------~al~~~p~~ 490 (538)
+++.++|+.
T Consensus 137 ~~~~~~~~~~al~~~~~~ 154 (477)
T 1wao_1 137 RSVVDSLDIESMTIEDEY 154 (477)
T ss_dssp CSTTTCCTTSSCCCCTTC
T ss_pred chhHhhhhhhhccccccc
Confidence 888887764
No 189
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.47 E-value=1.1e-12 Score=111.44 Aligned_cols=168 Identities=14% Similarity=0.114 Sum_probs=117.3
Q ss_pred HHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHHHHHHHhHHHHHHhh
Q 009278 260 AYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMA 339 (538)
Q Consensus 260 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (538)
++..|++++|...++......+....++..+|.++...|++++|+..+++++........ ....+.++..+|.++...+
T Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~l~~~~~~~g 80 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGD-HTAEHRALHQVGMVERMAG 80 (203)
T ss_dssp -----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC-HHHHHHHHHHHHHHHHHTT
T ss_pred ccccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCC-cHHHHHHHHHHHHHHHHcC
Confidence 356799999999665554433367889999999999999999999999999996554322 2233788999999999999
Q ss_pred hcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCC-CchHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 009278 340 KCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDP-KIADEEREKGNEFFKQQKYPEAIQHYTESLRR 418 (538)
Q Consensus 340 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 418 (538)
+ +++|+..+++++..... ...++ ....++..+|.++...|++++|+.++++++..
T Consensus 81 ~----~~~A~~~~~~al~~~~~--------------------~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 136 (203)
T 3gw4_A 81 N----WDAARRCFLEERELLAS--------------------LPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVY 136 (203)
T ss_dssp C----HHHHHHHHHHHHHHHHH--------------------SCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred C----HHHHHHHHHHHHHHHHH--------------------cCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 9 99999999999883110 00011 23456777888888888888888888887765
Q ss_pred CCC--C----chhHhHHHHHHHHhCCchhHHHHHHHHHhc
Q 009278 419 NPK--D----PRTYSNRAACYTKLGAMPEGLKDADKCIEL 452 (538)
Q Consensus 419 ~~~--~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 452 (538)
.+. + ..++..+|.++...|++++|+.++++++++
T Consensus 137 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 137 AQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDI 176 (203)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 321 1 123456666666666666666666666655
No 190
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.42 E-value=1.7e-13 Score=103.66 Aligned_cols=95 Identities=26% Similarity=0.318 Sum_probs=83.2
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHHHhccCCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCc------hHHHHH
Q 009278 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDW------SKGYSR 75 (538)
Q Consensus 2 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~ 75 (538)
++.++.+|..++..|+|++|+..|++++..+|.++.+++.+|.++..+|++++|+..|++++.++|++ ..+++.
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 46788899999999999999999999999999999999999999999999999999999999999988 888888
Q ss_pred HHHHHhhccCHHHHHHHHHhh
Q 009278 76 LGAAHLGLQDYIEAVNSYKKG 96 (538)
Q Consensus 76 la~~~~~~~~~~~A~~~~~~a 96 (538)
+|.++...|+++.|+..+++.
T Consensus 84 ~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 84 LELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHhHhhhHhHHHHh
Confidence 899988888888777766554
No 191
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.39 E-value=2.2e-12 Score=98.06 Aligned_cols=102 Identities=12% Similarity=0.215 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHhcCCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCchHHHHHHHHHHHHccCHHHHHHHHHHHhc
Q 009278 406 PEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLK 485 (538)
Q Consensus 406 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 485 (538)
++|+..|+++++.+|+++.+++.+|.++...|++++|+.+|++++..+|+++.+++.+|.++...|++++|+..|++++.
T Consensus 2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 35788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCC--CHHHHHHHHHHHHHhhhh
Q 009278 486 HDPQ--NQELLDGVRRCVQQINKA 507 (538)
Q Consensus 486 ~~p~--~~~~~~~l~~~~~~~~~~ 507 (538)
+.|. +......+...+..+++.
T Consensus 82 ~~~~~~~~~~~~~l~~~l~~l~~~ 105 (115)
T 2kat_A 82 AAQSRGDQQVVKELQVFLRRLARE 105 (115)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred hccccccHHHHHHHHHHHHHhccc
Confidence 8874 456666666666666654
No 192
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.39 E-value=4.8e-11 Score=114.97 Aligned_cols=86 Identities=10% Similarity=0.035 Sum_probs=64.7
Q ss_pred hHhHHHHHHHHhCCchhHHHHHHHHHhcCCCchHHHHHHHHHHHHcc-CHHHHHHHHHHHhccCCCCHHHHHHHHHHHHH
Q 009278 425 TYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLK-EYDKALETYQEGLKHDPQNQELLDGVRRCVQQ 503 (538)
Q Consensus 425 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 503 (538)
+|...+....+.++.+.|...|+++ ...+.....|...|.+-...| +.+.|...|+.+++..|+++..+..++.....
T Consensus 288 lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~ 366 (493)
T 2uy1_A 288 LRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLR 366 (493)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 3444444455677889999999999 433335567777777777766 59999999999999999999888888887777
Q ss_pred hhhhccCC
Q 009278 504 INKAGRGE 511 (538)
Q Consensus 504 ~~~~~~a~ 511 (538)
.|+.+.+.
T Consensus 367 ~~~~~~aR 374 (493)
T 2uy1_A 367 IGDEENAR 374 (493)
T ss_dssp HTCHHHHH
T ss_pred cCCHHHHH
Confidence 77766555
No 193
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.37 E-value=3.3e-12 Score=104.00 Aligned_cols=148 Identities=18% Similarity=0.170 Sum_probs=107.3
Q ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCH------HHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhh
Q 009278 247 KEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDI------SYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSD 320 (538)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 320 (538)
+..+.++..+|.++...|++++|+.+++++++..+... .++..+|.++...|++++|+.++++++...+....
T Consensus 6 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~- 84 (164)
T 3ro3_A 6 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD- 84 (164)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC-
Confidence 45678899999999999999999999999998765432 57889999999999999999999999987765422
Q ss_pred HHHHHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHH
Q 009278 321 FKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFF 400 (538)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~ 400 (538)
....+.++..+|.++...++ +++|+..+++++...+... ..+....++..+|.++.
T Consensus 85 ~~~~~~~~~~l~~~~~~~~~----~~~A~~~~~~a~~~~~~~~--------------------~~~~~~~~~~~la~~~~ 140 (164)
T 3ro3_A 85 RAVEAQSCYSLGNTYTLLQD----YEKAIDYHLKHLAIAQELK--------------------DRIGEGRACWSLGNAYT 140 (164)
T ss_dssp HHHHHHHHHHHHHHHHHTTC----HHHHHHHHHHHHHHHHHTT--------------------CHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhh----HHHHHHHHHHHHHHHHHcc--------------------chHhHHHHHHHHHHHHH
Confidence 22336677778888888877 8888888888776311000 11122445566666677
Q ss_pred hcCChHHHHHHHHHHHhcC
Q 009278 401 KQQKYPEAIQHYTESLRRN 419 (538)
Q Consensus 401 ~~~~~~~A~~~~~~al~~~ 419 (538)
..|++++|+.++++++++.
T Consensus 141 ~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 141 ALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHTCHHHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHHH
Confidence 7777777777776666543
No 194
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.36 E-value=2e-12 Score=105.35 Aligned_cols=142 Identities=13% Similarity=0.118 Sum_probs=116.6
Q ss_pred HHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcC
Q 009278 324 IARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQ 403 (538)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 403 (538)
.+.++..+|.++...++ +++|+..+++++...+... ..+....++..+|.++...|
T Consensus 8 ~~~~~~~l~~~~~~~~~----~~~A~~~~~~al~~~~~~~--------------------~~~~~~~~~~~l~~~~~~~g 63 (164)
T 3ro3_A 8 QGRAFGNLGNTHYLLGN----FRDAVIAHEQRLLIAKEFG--------------------DKAAERIAYSNLGNAYIFLG 63 (164)
T ss_dssp HHHHHHHHHHHHHHTTC----HHHHHHHHHHHHHHHHHHT--------------------CHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhcC----HHHHHHHHHHHHHHHHHhC--------------------CchHHHHHHHHHHHHHHHcC
Confidence 47889999999999999 9999999999998422100 11112357889999999999
Q ss_pred ChHHHHHHHHHHHhcCCCC------chhHhHHHHHHHHhCCchhHHHHHHHHHhcCC------CchHHHHHHHHHHHHcc
Q 009278 404 KYPEAIQHYTESLRRNPKD------PRTYSNRAACYTKLGAMPEGLKDADKCIELDP------TFSKGYTRKGAIQFFLK 471 (538)
Q Consensus 404 ~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~l~~~~~~~g 471 (538)
++++|+.++++++...+.. ..++..+|.++...|++++|+.++++++...+ ..+.++..+|.++...|
T Consensus 64 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g 143 (164)
T 3ro3_A 64 EFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALG 143 (164)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHcc
Confidence 9999999999999875542 46788999999999999999999999998732 23567899999999999
Q ss_pred CHHHHHHHHHHHhccCCC
Q 009278 472 EYDKALETYQEGLKHDPQ 489 (538)
Q Consensus 472 ~~~~A~~~~~~al~~~p~ 489 (538)
++++|+.++++++++...
T Consensus 144 ~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 144 NHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp CHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 999999999999987544
No 195
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.35 E-value=4.4e-12 Score=96.36 Aligned_cols=102 Identities=17% Similarity=0.253 Sum_probs=90.8
Q ss_pred HHHHHHHHHHhccCCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHHHHHhhccCHHHHHHHHHhhhh
Q 009278 19 EAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLD 98 (538)
Q Consensus 19 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 98 (538)
++|+..|++++..+|+++.+++.+|.++...|++++|+..|++++..+|+++.+++.+|.++...|++++|+..|+++++
T Consensus 2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 36889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCc--HHHHhhHHHHHHHHhhc
Q 009278 99 IDPNN--EALKSGLADAKAAASAS 120 (538)
Q Consensus 99 ~~p~~--~~~~~~l~~~~~~~~~~ 120 (538)
+.|.. ......+...+...+..
T Consensus 82 ~~~~~~~~~~~~~l~~~l~~l~~~ 105 (115)
T 2kat_A 82 AAQSRGDQQVVKELQVFLRRLARE 105 (115)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred hccccccHHHHHHHHHHHHHhccc
Confidence 98854 44555565555555543
No 196
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.34 E-value=6.2e-12 Score=94.91 Aligned_cols=93 Identities=18% Similarity=0.222 Sum_probs=77.0
Q ss_pred CchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCchHHHHHHHHHHHHccCHHHHHHHHHHHhccCCCC------HHHHH
Q 009278 422 DPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQN------QELLD 495 (538)
Q Consensus 422 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~ 495 (538)
++..+..+|.++...|++++|+..|+++++.+|+++.+++++|.++..+|++++|+..|++++.++|++ ..++.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 345677888888888888888888888888888888888888888888888888888888888888888 78888
Q ss_pred HHHHHHHHhhhhccCCCCh
Q 009278 496 GVRRCVQQINKAGRGELSP 514 (538)
Q Consensus 496 ~l~~~~~~~~~~~~a~~~~ 514 (538)
.++.++..+|+...|...+
T Consensus 83 ~~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHHhHhhhHhHH
Confidence 8888888888888777553
No 197
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.29 E-value=5.3e-12 Score=93.00 Aligned_cols=92 Identities=21% Similarity=0.268 Sum_probs=85.0
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHhccCCcchH-HHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHHHHHhhc
Q 009278 5 AKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHV-LYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGL 83 (538)
Q Consensus 5 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 83 (538)
.+.+|..++..|+|++|+..|+++++.+|.++. +++.+|.++..+|++++|+..|++++.++|+++.++..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-------- 74 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR-------- 74 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------
Confidence 467899999999999999999999999999999 99999999999999999999999999999999988744
Q ss_pred cCHHHHHHHHHhhhhcCCCcH
Q 009278 84 QDYIEAVNSYKKGLDIDPNNE 104 (538)
Q Consensus 84 ~~~~~A~~~~~~al~~~p~~~ 104 (538)
+.+.+++..|++++..+|+++
T Consensus 75 ~~~~~a~~~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 75 KMVMDILNFYNKDMYNQLEHH 95 (99)
T ss_dssp HHHHHHHHHHCCTTHHHHCCS
T ss_pred HHHHHHHHHHHHHhccCcccc
Confidence 678899999999998888764
No 198
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.28 E-value=2.7e-11 Score=87.54 Aligned_cols=84 Identities=31% Similarity=0.468 Sum_probs=57.5
Q ss_pred cchHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHHHHHhhccCHHHHHHHHHhhhhcCCCcHHHHhhHHHH
Q 009278 34 DNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNEALKSGLADA 113 (538)
Q Consensus 34 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 113 (538)
.++.+++.+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|+++++++|++..++..++.+
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 86 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 34566666777777777777777777777777777667777777777777777777777777777777776666666666
Q ss_pred HHHH
Q 009278 114 KAAA 117 (538)
Q Consensus 114 ~~~~ 117 (538)
+...
T Consensus 87 ~~~~ 90 (91)
T 1na3_A 87 KQKQ 90 (91)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 5543
No 199
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.27 E-value=2.7e-11 Score=87.47 Aligned_cols=83 Identities=28% Similarity=0.437 Sum_probs=45.6
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCchHHHHHHHHHH
Q 009278 388 IADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQ 467 (538)
Q Consensus 388 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 467 (538)
.+..+..+|.++...|++++|+..|++++...|.++.++..+|.++...|++++|+.+++++++.+|+++.++..+|.++
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 34455555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHc
Q 009278 468 FFL 470 (538)
Q Consensus 468 ~~~ 470 (538)
...
T Consensus 88 ~~~ 90 (91)
T 1na3_A 88 QKQ 90 (91)
T ss_dssp HHH
T ss_pred Hhc
Confidence 443
No 200
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.24 E-value=4.3e-11 Score=87.97 Aligned_cols=89 Identities=22% Similarity=0.295 Sum_probs=62.8
Q ss_pred CCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCchHHHHHHHHHHHHccCHHHHHHHHHHHhccCCC--CHHHHHH
Q 009278 419 NPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQ--NQELLDG 496 (538)
Q Consensus 419 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~ 496 (538)
+|+++.+++.+|.++...|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+..|++++++.|. +......
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~ 82 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSE 82 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHH
Confidence 57777777777777777777777777777777777777777777777777777777777777777777653 4455555
Q ss_pred HHHHHHHhhhh
Q 009278 497 VRRCVQQINKA 507 (538)
Q Consensus 497 l~~~~~~~~~~ 507 (538)
+..++...+..
T Consensus 83 l~~~l~~~~~~ 93 (100)
T 3ma5_A 83 LQDAKLKAEGL 93 (100)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHcccc
Confidence 55555555443
No 201
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.20 E-value=8.8e-11 Score=86.30 Aligned_cols=87 Identities=26% Similarity=0.338 Sum_probs=73.1
Q ss_pred cCCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHHHHHhhccCHHHHHHHHHhhhhcCCCc--HHHHh
Q 009278 31 LSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNN--EALKS 108 (538)
Q Consensus 31 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~ 108 (538)
.+|+++.+++.+|.++...|++++|+..|+++++++|+++.+|+.+|.+|...|++++|+..|++++++.|.. .....
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~ 81 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLS 81 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHH
Confidence 4789999999999999999999999999999999999999999999999999999999999999999987654 33444
Q ss_pred hHHHHHHHH
Q 009278 109 GLADAKAAA 117 (538)
Q Consensus 109 ~l~~~~~~~ 117 (538)
.+..++...
T Consensus 82 ~l~~~l~~~ 90 (100)
T 3ma5_A 82 ELQDAKLKA 90 (100)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHc
Confidence 555554444
No 202
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.19 E-value=2.4e-11 Score=89.41 Aligned_cols=91 Identities=23% Similarity=0.316 Sum_probs=72.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCch-hHhHHHHHHHHhCCchhHHHHHHHHHhcCCCchHHHHHHHHHHHHcc
Q 009278 393 REKGNEFFKQQKYPEAIQHYTESLRRNPKDPR-TYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLK 471 (538)
Q Consensus 393 ~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~-~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 471 (538)
+..|.++...|++++|+..|+++++.+|.++. +++.+|.++..+|++++|+..|+++++++|+++.++.. +
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~ 75 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------K 75 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------H
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------H
Confidence 45677888888888888888888888888888 88888888888888888888888888888888777643 6
Q ss_pred CHHHHHHHHHHHhccCCCCH
Q 009278 472 EYDKALETYQEGLKHDPQNQ 491 (538)
Q Consensus 472 ~~~~A~~~~~~al~~~p~~~ 491 (538)
.+.+++..|+++...+|+++
T Consensus 76 ~~~~a~~~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 76 MVMDILNFYNKDMYNQLEHH 95 (99)
T ss_dssp HHHHHHHHHCCTTHHHHCCS
T ss_pred HHHHHHHHHHHHhccCcccc
Confidence 67777888888777777654
No 203
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.13 E-value=1.5e-09 Score=84.91 Aligned_cols=98 Identities=11% Similarity=0.062 Sum_probs=87.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCchhHhHHHHHHHH----hCCchhHHHHHHHHHhcCCCchHHHHHHHHHHHH-
Q 009278 395 KGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTK----LGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFF- 469 (538)
Q Consensus 395 la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~- 469 (538)
+|.+|...+..++|+.+|+++.+. .++.+++++|.+|.. .+++++|+.+|+++.+. .++.+++++|.+|..
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G 106 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAG 106 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCC
Confidence 999999999999999999999987 688999999999998 89999999999999987 679999999999999
Q ss_pred ---ccCHHHHHHHHHHHhccCCCCHHHHHHHH
Q 009278 470 ---LKEYDKALETYQEGLKHDPQNQELLDGVR 498 (538)
Q Consensus 470 ---~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 498 (538)
.+++++|+.+|+++.+.. ++.+...|+
T Consensus 107 ~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~l~ 136 (138)
T 1klx_A 107 KGVVKNEKQAVKTFEKACRLG--SEDACGILN 136 (138)
T ss_dssp SSSCCCHHHHHHHHHHHHHTT--CHHHHHHC-
T ss_pred CCCCcCHHHHHHHHHHHHHCC--CHHHHHHHh
Confidence 999999999999999873 455554443
No 204
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=99.09 E-value=3e-09 Score=90.86 Aligned_cols=106 Identities=10% Similarity=0.058 Sum_probs=93.5
Q ss_pred cCCCchHHHHHHHHHHHh-----cCC------hHHHHHHHHHHHhcCCC--CchhHhHHHHHHHHh-----CCchhHHHH
Q 009278 384 FDPKIADEEREKGNEFFK-----QQK------YPEAIQHYTESLRRNPK--DPRTYSNRAACYTKL-----GAMPEGLKD 445 (538)
Q Consensus 384 ~~~~~~~~~~~la~~~~~-----~~~------~~~A~~~~~~al~~~~~--~~~~~~~la~~~~~~-----~~~~~A~~~ 445 (538)
.+|++++.++..|.+... .|. ...|...++++++++|+ +..+|..+|.+|... |+.++|..+
T Consensus 147 ~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ 226 (301)
T 3u64_A 147 CTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTA 226 (301)
T ss_dssp CCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHH
T ss_pred cCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHH
Confidence 678888888887776643 233 57899999999999999 677999999999995 999999999
Q ss_pred HHHHHhcCCCc-hHHHHHHHHHHHH-ccCHHHHHHHHHHHhccCCC
Q 009278 446 ADKCIELDPTF-SKGYTRKGAIQFF-LKEYDKALETYQEGLKHDPQ 489 (538)
Q Consensus 446 ~~~al~~~p~~-~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~p~ 489 (538)
|+++++++|+. ..+++.+|..+.. .|++++|..++++++...|.
T Consensus 227 ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 227 FEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred HHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 99999999975 9999999999988 59999999999999998877
No 205
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.99 E-value=8.1e-10 Score=105.36 Aligned_cols=126 Identities=13% Similarity=0.116 Sum_probs=92.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhc-----CCCC---chhHhHHHHHHHHhCCchhHHHHHHHHHhc--------CCCchH
Q 009278 395 KGNEFFKQQKYPEAIQHYTESLRR-----NPKD---PRTYSNRAACYTKLGAMPEGLKDADKCIEL--------DPTFSK 458 (538)
Q Consensus 395 la~~~~~~~~~~~A~~~~~~al~~-----~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~~ 458 (538)
.+..+..+|+|++|+..+++++++ .|++ ..++.++|.+|..+|+|++|+.++++++++ +|+...
T Consensus 315 ~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~ 394 (490)
T 3n71_A 315 KIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGM 394 (490)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHH
Confidence 344566788888888888888864 3344 356788888888888888888888888865 234455
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHhcc-----CCCCHHH---HHHHHHHHHHhhhhccCCCChHHHHHH
Q 009278 459 GYTRKGAIQFFLKEYDKALETYQEGLKH-----DPQNQEL---LDGVRRCVQQINKAGRGELSPEELKER 520 (538)
Q Consensus 459 ~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~ 520 (538)
.+.++|.+|..+|++++|+..|++|+.+ -|+++.+ ...++.++..++++.+|+..+.++.+.
T Consensus 395 ~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 395 AVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788888888888888888888888864 4666544 456777788888888887666555443
No 206
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.99 E-value=3.8e-09 Score=75.36 Aligned_cols=74 Identities=15% Similarity=0.155 Sum_probs=68.2
Q ss_pred CCcchHHHHHHHHHHHhcCC---HHHHHHHHHHHhccCCCchHHHHHHHHHHhhccCHHHHHHHHHhhhhcCCCcHH
Q 009278 32 SPDNHVLYSNRSAAHASLHN---YADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNEA 105 (538)
Q Consensus 32 ~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~ 105 (538)
+|+++.++..+|.+++..++ .++|...+++++.++|+++.+++.+|..++..|+|++|+..|+++++.+|.++.
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~ 78 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLD 78 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCC
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 68899999999999987666 799999999999999999999999999999999999999999999999998444
No 207
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.97 E-value=5.5e-09 Score=74.50 Aligned_cols=74 Identities=15% Similarity=0.166 Sum_probs=59.3
Q ss_pred CCCCchhHhHHHHHHHHhCC---chhHHHHHHHHHhcCCCchHHHHHHHHHHHHccCHHHHHHHHHHHhccCCCCHH
Q 009278 419 NPKDPRTYSNRAACYTKLGA---MPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQE 492 (538)
Q Consensus 419 ~~~~~~~~~~la~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 492 (538)
+|+++.++..+|.+++..++ .++|...++++++.+|+++.+++.+|..++..|+|++|+.+|+++++.+|.++.
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~ 78 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLD 78 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCC
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 57778888888888766555 688888888888888888888888888888888888888888888888877443
No 208
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.96 E-value=8e-09 Score=79.44 Aligned_cols=104 Identities=11% Similarity=0.034 Sum_probs=93.2
Q ss_pred CCHHHHHHHHHHHhccCCcchHHHHHHHHHHHhcC---CHHHHHHHHHHHhccC-C-CchHHHHHHHHHHhhccCHHHHH
Q 009278 16 GDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLH---NYADALADAKKTVELK-P-DWSKGYSRLGAAHLGLQDYIEAV 90 (538)
Q Consensus 16 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~-p-~~~~~~~~la~~~~~~~~~~~A~ 90 (538)
.....+.+.|.+.+..+|.+.++.+.+|+++.+.+ +.++++..++.+++.+ | ++.++++.+|..++++|+|++|+
T Consensus 12 ~~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 12 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHH
Confidence 45567888899999889999999999999999998 6779999999999999 7 67899999999999999999999
Q ss_pred HHHHhhhhcCCCcHHHHhhHHHHHHHHhh
Q 009278 91 NSYKKGLDIDPNNEALKSGLADAKAAASA 119 (538)
Q Consensus 91 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 119 (538)
.+++++++++|++..+......+.....+
T Consensus 92 ~y~~~lL~ieP~n~QA~~Lk~~ie~~~~k 120 (152)
T 1pc2_A 92 KYVRGLLQTEPQNNQAKELERLIDKAMKK 120 (152)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999998887777666543
No 209
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.95 E-value=2.3e-08 Score=89.52 Aligned_cols=108 Identities=15% Similarity=0.148 Sum_probs=86.7
Q ss_pred cCCCchHHHHHHHHHHHhcCCh----HH---HH-HHHHH--HHhcCCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhcC
Q 009278 384 FDPKIADEEREKGNEFFKQQKY----PE---AI-QHYTE--SLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELD 453 (538)
Q Consensus 384 ~~~~~~~~~~~la~~~~~~~~~----~~---A~-~~~~~--al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 453 (538)
.+|+++.++..++.++.....+ .. ++ ..+.. ++...|.++.++..++..+...|++++|+..+++++.++
T Consensus 228 lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln 307 (372)
T 3ly7_A 228 SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE 307 (372)
T ss_dssp HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 8999999998888877532111 11 11 12222 235678889999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHHHccCHHHHHHHHHHHhccCCCCHH
Q 009278 454 PTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQE 492 (538)
Q Consensus 454 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 492 (538)
|+ ..++..+|.++...|++++|++.|++|+.++|..+.
T Consensus 308 ~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t 345 (372)
T 3ly7_A 308 MS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANT 345 (372)
T ss_dssp CC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHH
T ss_pred CC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcCh
Confidence 75 678889999999999999999999999999998753
No 210
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.95 E-value=6.7e-09 Score=79.87 Aligned_cols=101 Identities=16% Similarity=0.141 Sum_probs=83.7
Q ss_pred hHHHHHHHHHHHhcCCCCchhHhHHHHHHHHhC---CchhHHHHHHHHHhcC-C-CchHHHHHHHHHHHHccCHHHHHHH
Q 009278 405 YPEAIQHYTESLRRNPKDPRTYSNRAACYTKLG---AMPEGLKDADKCIELD-P-TFSKGYTRKGAIQFFLKEYDKALET 479 (538)
Q Consensus 405 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~---~~~~A~~~~~~al~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~ 479 (538)
...+.+.|.+.+..+|.+..+.+.+|+++.+.+ +.++++..++.+++.+ | +..+.++++|..++++|+|++|..+
T Consensus 14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 455667777777778888889999999998877 6678999999999888 6 5688899999999999999999999
Q ss_pred HHHHhccCCCCHHHHHHHHHHHHHhh
Q 009278 480 YQEGLKHDPQNQELLDGVRRCVQQIN 505 (538)
Q Consensus 480 ~~~al~~~p~~~~~~~~l~~~~~~~~ 505 (538)
++++++++|+|.++......+..++.
T Consensus 94 ~~~lL~ieP~n~QA~~Lk~~ie~~~~ 119 (152)
T 1pc2_A 94 VRGLLQTEPQNNQAKELERLIDKAMK 119 (152)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 99999999999888877666655553
No 211
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.94 E-value=2.1e-09 Score=102.46 Aligned_cols=125 Identities=10% Similarity=0.042 Sum_probs=100.6
Q ss_pred hhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhc-----C
Q 009278 345 YEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRR-----N 419 (538)
Q Consensus 345 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~ 419 (538)
+++|+..+++++...... +| ..+|....++.++|.+|..+|+|++|+.++++++.+ .
T Consensus 325 ~~eA~~l~~~aL~~~~~~-----lg-------------~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG 386 (490)
T 3n71_A 325 YHEVVKLCRECLEKQEPV-----FA-------------DTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYH 386 (490)
T ss_dssp HHHHHHHHHHHHHHHTTT-----BC-------------TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHh-----cC-------------CCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcC
Confidence 888888888888742210 00 024555677899999999999999999999999965 3
Q ss_pred CCC---chhHhHHHHHHHHhCCchhHHHHHHHHHhc-----CCCc---hHHHHHHHHHHHHccCHHHHHHHHHHHhccC
Q 009278 420 PKD---PRTYSNRAACYTKLGAMPEGLKDADKCIEL-----DPTF---SKGYTRKGAIQFFLKEYDKALETYQEGLKHD 487 (538)
Q Consensus 420 ~~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 487 (538)
|++ ...++++|.+|..+|++++|+.+|++++++ .|++ ......++.++..+|.+++|...|.++.+..
T Consensus 387 ~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 387 HNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp TTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444 457899999999999999999999999976 3554 4456789999999999999999999987643
No 212
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.94 E-value=7.7e-08 Score=82.24 Aligned_cols=85 Identities=14% Similarity=0.033 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHcCCC--chHHHHHHHHHHHhc-----CChHHHHHHHHHHHhcCCCC-chhHhHHHHHHHH-hCCchhH
Q 009278 372 EKAKKELEQQEIFDPK--IADEEREKGNEFFKQ-----QKYPEAIQHYTESLRRNPKD-PRTYSNRAACYTK-LGAMPEG 442 (538)
Q Consensus 372 ~~a~~~~~~~~~~~~~--~~~~~~~la~~~~~~-----~~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~~-~~~~~~A 442 (538)
..|...++++++++|+ +..+|..+|.+|... |+.++|..+|+++++++|+. ..+++..|..+.. .|++++|
T Consensus 180 ~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a 259 (301)
T 3u64_A 180 HAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGF 259 (301)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHH
Confidence 3444455555559999 677999999999995 99999999999999999975 9999999999988 5999999
Q ss_pred HHHHHHHHhcCCCc
Q 009278 443 LKDADKCIELDPTF 456 (538)
Q Consensus 443 ~~~~~~al~~~p~~ 456 (538)
..++++++...|..
T Consensus 260 ~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 260 DEALDRALAIDPES 273 (301)
T ss_dssp HHHHHHHHHCCGGG
T ss_pred HHHHHHHHcCCCCC
Confidence 99999999998764
No 213
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.93 E-value=8.3e-08 Score=85.91 Aligned_cols=74 Identities=14% Similarity=0.011 Sum_probs=68.8
Q ss_pred cCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCchH
Q 009278 384 FDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSK 458 (538)
Q Consensus 384 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~ 458 (538)
.+|..+.++..++.++...|++++|+..+++++.++| +...|..+|.++...|++++|++.|.+|+.++|..+.
T Consensus 272 ~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t 345 (372)
T 3ly7_A 272 ELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANT 345 (372)
T ss_dssp GGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHH
T ss_pred cCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcCh
Confidence 6789999999999999999999999999999999997 4678889999999999999999999999999998754
No 214
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.93 E-value=1.4e-08 Score=79.27 Aligned_cols=120 Identities=13% Similarity=0.048 Sum_probs=97.6
Q ss_pred CCHHHHHHHHHHHHHccccchhhHHHHHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHH
Q 009278 298 GKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKE 377 (538)
Q Consensus 298 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 377 (538)
+++++|+.+|+++.+..... +. +|.++..... .++|+.+|+++.+
T Consensus 9 ~d~~~A~~~~~~aa~~g~~~---------a~--lg~~y~~g~~----~~~A~~~~~~Aa~-------------------- 53 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEMF---------GC--LSLVSNSQIN----KQKLFQYLSKACE-------------------- 53 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCTT---------HH--HHHHTCTTSC----HHHHHHHHHHHHH--------------------
T ss_pred cCHHHHHHHHHHHHcCCCHh---------hh--HHHHHHcCCC----HHHHHHHHHHHHc--------------------
Confidence 46788888888888876332 22 6666666555 7788888888877
Q ss_pred HHHHHHcCCCchHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCchhHhHHHHHHHH----hCCchhHHHHHHHH
Q 009278 378 LEQQEIFDPKIADEEREKGNEFFK----QQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTK----LGAMPEGLKDADKC 449 (538)
Q Consensus 378 ~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~a 449 (538)
. .++.+++.+|.+|.. .+++++|+.+|+++.+. .++.+++++|.+|.. .+++++|+.+|+++
T Consensus 54 ------~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A 123 (138)
T 1klx_A 54 ------L--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKA 123 (138)
T ss_dssp ------T--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred ------C--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHH
Confidence 3 678999999999998 89999999999999987 579999999999999 89999999999999
Q ss_pred HhcCCCchHHHHHHH
Q 009278 450 IELDPTFSKGYTRKG 464 (538)
Q Consensus 450 l~~~p~~~~~~~~l~ 464 (538)
.+.. ++.+...++
T Consensus 124 a~~g--~~~A~~~l~ 136 (138)
T 1klx_A 124 CRLG--SEDACGILN 136 (138)
T ss_dssp HHTT--CHHHHHHC-
T ss_pred HHCC--CHHHHHHHh
Confidence 9873 455555554
No 215
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.85 E-value=1.8e-08 Score=74.10 Aligned_cols=76 Identities=22% Similarity=0.254 Sum_probs=60.2
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHHHhccC-------CcchHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHH
Q 009278 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLS-------PDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYS 74 (538)
Q Consensus 2 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 74 (538)
++.++..|..++..|+|..|+.+|++|+... +..+.++..+|.++.++|+++.|+..+++++.++|++..+..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 4678888999999999999999999888752 345677888888888888888888888888888888877766
Q ss_pred HHH
Q 009278 75 RLG 77 (538)
Q Consensus 75 ~la 77 (538)
.++
T Consensus 85 n~~ 87 (104)
T 2v5f_A 85 NLK 87 (104)
T ss_dssp HHH
T ss_pred hHH
Confidence 665
No 216
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.74 E-value=1.1e-07 Score=69.99 Aligned_cols=76 Identities=11% Similarity=-0.053 Sum_probs=47.0
Q ss_pred hHhHHHHHHHHhCCchhHHHHHHHHHhcC-------CCchHHHHHHHHHHHHccCHHHHHHHHHHHhccCCCCHHHHHHH
Q 009278 425 TYSNRAACYTKLGAMPEGLKDADKCIELD-------PTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDGV 497 (538)
Q Consensus 425 ~~~~la~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 497 (538)
-.+.+|..++..|+|..|+.+|+++++.. +..+.++..+|.++.++|+++.|+.++++++.+.|+++.+..++
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~ 86 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNL 86 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhH
Confidence 34455555555555555555555555431 23456667777777777777777777777777777777766666
Q ss_pred HHH
Q 009278 498 RRC 500 (538)
Q Consensus 498 ~~~ 500 (538)
...
T Consensus 87 ~~~ 89 (104)
T 2v5f_A 87 KYF 89 (104)
T ss_dssp HHH
T ss_pred HHH
Confidence 533
No 217
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.67 E-value=1.2e-07 Score=88.91 Aligned_cols=104 Identities=12% Similarity=0.109 Sum_probs=86.0
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHhcc-----CCcch---HHHHHHHHHHHhcCCHHHHHHHHHHHhcc--------CCC
Q 009278 5 AKAKGNAAFSSGDYEAAVRHFTEAISL-----SPDNH---VLYSNRSAAHASLHNYADALADAKKTVEL--------KPD 68 (538)
Q Consensus 5 ~~~~g~~~~~~g~~~~A~~~~~~al~~-----~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~ 68 (538)
....+......|+|++|+..|++++++ .|+++ .++.++|.+|..+|+|++|+.++++++.+ +|+
T Consensus 301 ~le~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~ 380 (433)
T 3qww_A 301 VIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLN 380 (433)
T ss_dssp HHHHHHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHH
T ss_pred HHHHHHHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChH
Confidence 344455566789999999999999984 45554 77889999999999999999999999975 344
Q ss_pred chHHHHHHHHHHhhccCHHHHHHHHHhhhhc-----CCCcHHHHh
Q 009278 69 WSKGYSRLGAAHLGLQDYIEAVNSYKKGLDI-----DPNNEALKS 108 (538)
Q Consensus 69 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~ 108 (538)
-...+..+|.+|..+|++++|+..|++|+++ .|+++....
T Consensus 381 ~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 425 (433)
T 3qww_A 381 VASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISE 425 (433)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHH
Confidence 5567899999999999999999999999875 677776543
No 218
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.66 E-value=1e-07 Score=89.33 Aligned_cols=97 Identities=8% Similarity=0.043 Sum_probs=82.2
Q ss_pred HhcCChHHHHHHHHHHHhc-----CCCCc---hhHhHHHHHHHHhCCchhHHHHHHHHHhc--------CCCchHHHHHH
Q 009278 400 FKQQKYPEAIQHYTESLRR-----NPKDP---RTYSNRAACYTKLGAMPEGLKDADKCIEL--------DPTFSKGYTRK 463 (538)
Q Consensus 400 ~~~~~~~~A~~~~~~al~~-----~~~~~---~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l 463 (538)
...|+|++|+..+++++++ .|+++ .++.++|.+|..+|+|++|+.++++++++ +|+-...+.++
T Consensus 309 ~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 388 (433)
T 3qww_A 309 KHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKL 388 (433)
T ss_dssp TTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 3568999999999999974 45554 57889999999999999999999999976 34445678999
Q ss_pred HHHHHHccCHHHHHHHHHHHhcc-----CCCCHHHHHH
Q 009278 464 GAIQFFLKEYDKALETYQEGLKH-----DPQNQELLDG 496 (538)
Q Consensus 464 ~~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~ 496 (538)
|.+|..+|++++|+..|++|+++ .|+++.+...
T Consensus 389 a~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l 426 (433)
T 3qww_A 389 GRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEI 426 (433)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHH
T ss_pred HHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHH
Confidence 99999999999999999999975 6888877643
No 219
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.59 E-value=1.5e-07 Score=88.50 Aligned_cols=108 Identities=13% Similarity=0.206 Sum_probs=87.0
Q ss_pred HHHHhcCChHHHHHHHHHHHhc-----CCCC---chhHhHHHHHHHHhCCchhHHHHHHHHHhc--------CCCchHHH
Q 009278 397 NEFFKQQKYPEAIQHYTESLRR-----NPKD---PRTYSNRAACYTKLGAMPEGLKDADKCIEL--------DPTFSKGY 460 (538)
Q Consensus 397 ~~~~~~~~~~~A~~~~~~al~~-----~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~ 460 (538)
.-+..+|+|++|+..+++++++ .|++ ..++.++|.+|..+|+|++|+.++++++.+ +|.-...+
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 3356789999999999999975 3444 357899999999999999999999999976 34445578
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHhcc-----CCCCHHHHHH---HHHHHHHh
Q 009278 461 TRKGAIQFFLKEYDKALETYQEGLKH-----DPQNQELLDG---VRRCVQQI 504 (538)
Q Consensus 461 ~~l~~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~---l~~~~~~~ 504 (538)
+++|.+|..+|++++|+.+|++|+++ -|+++.+... |+.+...+
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~ 426 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANI 426 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999975 6788766544 44444433
No 220
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.58 E-value=2.6e-07 Score=86.86 Aligned_cols=106 Identities=17% Similarity=0.132 Sum_probs=87.4
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHhcc-----CCcc---hHHHHHHHHHHHhcCCHHHHHHHHHHHhcc--------CC
Q 009278 4 EAKAKGNAAFSSGDYEAAVRHFTEAISL-----SPDN---HVLYSNRSAAHASLHNYADALADAKKTVEL--------KP 67 (538)
Q Consensus 4 ~~~~~g~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p 67 (538)
........+..+|+|++|+..|++++++ .|++ ..++.++|.+|..+|+|++|+.++++++.+ +|
T Consensus 289 ~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp 368 (429)
T 3qwp_A 289 ESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHP 368 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCCh
Confidence 3445566677899999999999999975 3444 478899999999999999999999999965 34
Q ss_pred CchHHHHHHHHHHhhccCHHHHHHHHHhhhhc-----CCCcHHHHhh
Q 009278 68 DWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDI-----DPNNEALKSG 109 (538)
Q Consensus 68 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~ 109 (538)
+-...+..+|.+|..+|++++|+..|++++++ -|+++.....
T Consensus 369 ~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~ 415 (429)
T 3qwp_A 369 VRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDL 415 (429)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 44567899999999999999999999999864 6777665443
No 221
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=98.50 E-value=2e-06 Score=63.54 Aligned_cols=103 Identities=12% Similarity=0.035 Sum_probs=88.5
Q ss_pred cCCHHHHHHHHHHHhccCCcchHHHHHHHHHHHhcCCHHH---HHHHHHHHhccC-C-CchHHHHHHHHHHhhccCHHHH
Q 009278 15 SGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYAD---ALADAKKTVELK-P-DWSKGYSRLGAAHLGLQDYIEA 89 (538)
Q Consensus 15 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~---A~~~~~~al~~~-p-~~~~~~~~la~~~~~~~~~~~A 89 (538)
......+...|.+.+..++.+..+.+.+|+++.+..+... ++..++..+..+ | ..-++++.+|..++++|+|++|
T Consensus 14 ~~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 14 VEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHH
Confidence 3445667778888888788889999999999999998777 999999999987 6 5678999999999999999999
Q ss_pred HHHHHhhhhcCCCcHHHHhhHHHHHHHH
Q 009278 90 VNSYKKGLDIDPNNEALKSGLADAKAAA 117 (538)
Q Consensus 90 ~~~~~~al~~~p~~~~~~~~l~~~~~~~ 117 (538)
..+++.+++..|+|..+......+..+.
T Consensus 94 ~~~~~~lL~~eP~n~QA~~Lk~~i~~~i 121 (126)
T 1nzn_A 94 LKYVRGLLQTEPQNNQAKELERLIDKAM 121 (126)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 9999999999999998877666555443
No 222
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=98.44 E-value=2.2e-06 Score=63.33 Aligned_cols=98 Identities=16% Similarity=0.120 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHhcCCCCchhHhHHHHHHHHhCCchh---HHHHHHHHHhcC-C-CchHHHHHHHHHHHHccCHHHHHHHH
Q 009278 406 PEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPE---GLKDADKCIELD-P-TFSKGYTRKGAIQFFLKEYDKALETY 480 (538)
Q Consensus 406 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~---A~~~~~~al~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~~ 480 (538)
..+...|.+.+...+.+..+.+++|+++...++... ++.+++..+..+ | ...+.++.+|..+++.|+|.+|..++
T Consensus 18 ~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~ 97 (126)
T 1nzn_A 18 LKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYV 97 (126)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 344455555555555566666677777666665444 666666666655 4 34566777777777777777777777
Q ss_pred HHHhccCCCCHHHHHHHHHHHHH
Q 009278 481 QEGLKHDPQNQELLDGVRRCVQQ 503 (538)
Q Consensus 481 ~~al~~~p~~~~~~~~l~~~~~~ 503 (538)
+.+++..|+|.++......+..+
T Consensus 98 ~~lL~~eP~n~QA~~Lk~~i~~~ 120 (126)
T 1nzn_A 98 RGLLQTEPQNNQAKELERLIDKA 120 (126)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHH
Confidence 77777777777766555444433
No 223
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=98.36 E-value=1.7e-05 Score=59.75 Aligned_cols=113 Identities=11% Similarity=0.025 Sum_probs=96.6
Q ss_pred cCCCchHHHHHHHHHHHhcCCh------HHHHHHHHHHHhcCCCC--------chhHhHHHHHHHHhCCchhHHHHHHHH
Q 009278 384 FDPKIADEEREKGNEFFKQQKY------PEAIQHYTESLRRNPKD--------PRTYSNRAACYTKLGAMPEGLKDADKC 449 (538)
Q Consensus 384 ~~~~~~~~~~~la~~~~~~~~~------~~A~~~~~~al~~~~~~--------~~~~~~la~~~~~~~~~~~A~~~~~~a 449 (538)
+.|++++.|..........|+. +.-++.|++++..-|.. ..+|...|.. ...++.++|...|+.+
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a 86 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMA 86 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHH
Confidence 6899999999999999999999 88899999999877643 2355556644 5679999999999999
Q ss_pred HhcCCCchHHHHHHHHHHHHccCHHHHHHHHHHHhccCCCCHHHHHHH
Q 009278 450 IELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDGV 497 (538)
Q Consensus 450 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 497 (538)
++.+...+.+|...|..-.++|+...|...+.+++.+.|...+.+...
T Consensus 87 ~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a 134 (161)
T 4h7y_A 87 RANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIA 134 (161)
T ss_dssp HHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHH
Confidence 999888899999999999999999999999999999999987766443
No 224
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=98.14 E-value=0.00019 Score=54.07 Aligned_cols=129 Identities=13% Similarity=-0.043 Sum_probs=95.1
Q ss_pred hhCCCCHHHHHHHHHHHHHhCCH------HHHHHHHHHHHHccccc-hhhHHHHHHHHHHhHHHHHHhhhcccChhHHHH
Q 009278 278 ELDDEDISYLTNRAAVYLEMGKY------EECIKDCDKAVERGREL-RSDFKMIARALTRKGTALVKMAKCSKDYEPAIE 350 (538)
Q Consensus 278 ~~~p~~~~~~~~la~~~~~~~~~------~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 350 (538)
-+.|++++.|..........|+. ++-++.|++++..-|.. ...+.....+|...+.. ...++ .++|.+
T Consensus 7 ~~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D----~d~aR~ 81 (161)
T 4h7y_A 7 MMMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQE----PDDARD 81 (161)
T ss_dssp ---CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHC----GGGCHH
T ss_pred eeCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcC----HHHHHH
Confidence 35799999999999999999999 89999999999876543 33445556666666643 44555 888888
Q ss_pred HHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHhHHH
Q 009278 351 TFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRA 430 (538)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la 430 (538)
.|+.++. .....+.+|...|..-.++|+...|.+.+.+++.+.|..... ...+
T Consensus 82 vy~~a~~--------------------------~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~-le~a 134 (161)
T 4h7y_A 82 YFQMARA--------------------------NCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEM-LEIA 134 (161)
T ss_dssp HHHHHHH--------------------------HCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHH-HHHH
T ss_pred HHHHHHH--------------------------HhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHH-HHHH
Confidence 8888887 445568889999999999999999999999999988865443 3334
Q ss_pred HHHHHhCC
Q 009278 431 ACYTKLGA 438 (538)
Q Consensus 431 ~~~~~~~~ 438 (538)
..-...|.
T Consensus 135 ~~nl~~~~ 142 (161)
T 4h7y_A 135 LRNLNLQK 142 (161)
T ss_dssp HHHHHTTC
T ss_pred HHhhhcCC
Confidence 44444443
No 225
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=98.10 E-value=1.8e-05 Score=61.21 Aligned_cols=110 Identities=12% Similarity=0.016 Sum_probs=86.4
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHhccCCcch---------HHHHHHHHHHHhcCCHHHHHHHHHHHhccC------C-
Q 009278 4 EAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNH---------VLYSNRSAAHASLHNYADALADAKKTVELK------P- 67 (538)
Q Consensus 4 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~---------~~~~~la~~~~~~g~~~~A~~~~~~al~~~------p- 67 (538)
++++....++..|.|+.|+-....++....+++ .+++.+|.+++..|+|..|...|++++... |
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 468889999999999999999999777644333 488999999999999999999999987542 1
Q ss_pred ------------------CchHHHHHHHHHHhhccCHHHHHHHHHhhhhcCCCcHHHHhhHHHHH
Q 009278 68 ------------------DWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNEALKSGLADAK 114 (538)
Q Consensus 68 ------------------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 114 (538)
...+..+.++.||..++++.+|+..++.+-. ....+.+...|+.+|
T Consensus 102 ~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~-k~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 102 VRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS-RQRTPKINMLLANLY 165 (167)
T ss_dssp ---------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG-GGCCHHHHHHHHHHC
T ss_pred ccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc-hhcCHHHHHHHHHHh
Confidence 1126789999999999999999999887532 224455666666554
No 226
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.09 E-value=0.00027 Score=67.99 Aligned_cols=184 Identities=11% Similarity=0.056 Sum_probs=127.0
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHcc--ccchhhHHHHHHHHHHhHHHHHHhhh-----cccChhHHHHHHHHHHhcC
Q 009278 287 LTNRAAVYLEMGKYEECIKDCDKAVERG--RELRSDFKMIARALTRKGTALVKMAK-----CSKDYEPAIETFQKALTEH 359 (538)
Q Consensus 287 ~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~A~~~~~~~~~~~ 359 (538)
+..+-..+.+.|+.++|+.+|+++.... |+ ..+|..+-.++...+. ..+..+.|...|++.....
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd--------~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G 100 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLS--------QYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDK 100 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCC--------HHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC--------HhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhC
Confidence 4445566778888888888888887642 33 1222222222211111 0011566666666665522
Q ss_pred CChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhcC-CCCchhHhHHHHHHHHhCC
Q 009278 360 RNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRN-PKDPRTYSNRAACYTKLGA 438 (538)
Q Consensus 360 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~ 438 (538)
..| +...|..+...+.+.|++++|..+|++..+.. +.+...|..+-..|.+.|+
T Consensus 101 ------------------------~~P-d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~ 155 (501)
T 4g26_A 101 ------------------------VVP-NEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGD 155 (501)
T ss_dssp ------------------------CCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTC
T ss_pred ------------------------CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCC
Confidence 223 46678888999999999999999999987653 2367788899999999999
Q ss_pred chhHHHHHHHHHhc--CCCchHHHHHHHHHHHHccCHHHHHHHHHHHhcc--CCCCHHHHHHHHHHHHHhh
Q 009278 439 MPEGLKDADKCIEL--DPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKH--DPQNQELLDGVRRCVQQIN 505 (538)
Q Consensus 439 ~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~ 505 (538)
.++|...|++..+. .| +..+|..+-..+.+.|+.++|...|++..+. .|+ ...+..+...+...+
T Consensus 156 ~~~A~~l~~~M~~~G~~P-d~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps-~~T~~~l~~~F~s~~ 224 (501)
T 4g26_A 156 ADKAYEVDAHMVESEVVP-EEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVS-KSTFDMIEEWFKSEV 224 (501)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBC-HHHHHHHHHHHHSHH
T ss_pred HHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcC-HHHHHHHHHHHhcCc
Confidence 99999999998875 34 4678899999999999999999999998763 564 444445555444433
No 227
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.09 E-value=0.00081 Score=64.73 Aligned_cols=177 Identities=9% Similarity=-0.025 Sum_probs=131.5
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhC---------CHHHHHHHHHHHHHc--cccchhh
Q 009278 253 EKEAGNAAYKKKEFEKAIEHYSSALELD-DEDISYLTNRAAVYLEMG---------KYEECIKDCDKAVER--GRELRSD 320 (538)
Q Consensus 253 ~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~---------~~~~A~~~~~~~~~~--~~~~~~~ 320 (538)
+...-..+.+.|+.++|+.+|+++.+.. +-+..++..+-.++...+ ..++|..+|++.... .|+
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd---- 104 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPN---- 104 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCC----
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCC----
Confidence 4445577789999999999999998764 225566666666665443 378899999998774 343
Q ss_pred HHHHHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHH
Q 009278 321 FKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFF 400 (538)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~ 400 (538)
..+|..+-..+...++ +++|...|++..... ..| +...|..+-..|.
T Consensus 105 ----~~tyn~lI~~~~~~g~----~~~A~~l~~~M~~~g------------------------~~P-d~~tyn~lI~~~~ 151 (501)
T 4g26_A 105 ----EATFTNGARLAVAKDD----PEMAFDMVKQMKAFG------------------------IQP-RLRSYGPALFGFC 151 (501)
T ss_dssp ----HHHHHHHHHHHHHHTC----HHHHHHHHHHHHHTT------------------------CCC-CHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHhcCC----HHHHHHHHHHHHHcC------------------------CCC-ccceehHHHHHHH
Confidence 3456666666777777 999999999887732 223 4667888888999
Q ss_pred hcCChHHHHHHHHHHHhcCC-CCchhHhHHHHHHHHhCCchhHHHHHHHHHhc--CCCchHHHHHHHHHH
Q 009278 401 KQQKYPEAIQHYTESLRRNP-KDPRTYSNRAACYTKLGAMPEGLKDADKCIEL--DPTFSKGYTRKGAIQ 467 (538)
Q Consensus 401 ~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~ 467 (538)
+.|+.++|.++|+...+..- .+...|..+-..+.+.|+.++|..++++.-+. .|+ ..++..+-..+
T Consensus 152 ~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps-~~T~~~l~~~F 220 (501)
T 4g26_A 152 RKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVS-KSTFDMIEEWF 220 (501)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBC-HHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcC-HHHHHHHHHHH
Confidence 99999999999999886532 26678999999999999999999999998764 454 34444443333
No 228
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=97.86 E-value=0.00019 Score=53.04 Aligned_cols=83 Identities=14% Similarity=-0.002 Sum_probs=59.5
Q ss_pred CchhHhHHHHHHHHhCCc---hhHHHHHHHHHhcCCC-chHHHHHHHHHHHHccCHHHHHHHHHHHhccCCCCHHHHHHH
Q 009278 422 DPRTYSNRAACYTKLGAM---PEGLKDADKCIELDPT-FSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDGV 497 (538)
Q Consensus 422 ~~~~~~~la~~~~~~~~~---~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 497 (538)
++.+.+++|+++.+..+. .+++..++..++.+|. ..+.++.+|..++++|+|.+|..+.+.+++..|+|.++....
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk 118 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK 118 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 456777777777766543 4677777777777773 466777888888888888888888888888888887776655
Q ss_pred HHHHHHh
Q 009278 498 RRCVQQI 504 (538)
Q Consensus 498 ~~~~~~~ 504 (538)
..+..++
T Consensus 119 ~~Ie~ki 125 (134)
T 3o48_A 119 SMVEDKI 125 (134)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5554443
No 229
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.84 E-value=0.00055 Score=51.36 Aligned_cols=85 Identities=14% Similarity=-0.010 Sum_probs=68.6
Q ss_pred CCCchhHhHHHHHHHHhCCc---hhHHHHHHHHHhcCC-CchHHHHHHHHHHHHccCHHHHHHHHHHHhccCCCCHHHHH
Q 009278 420 PKDPRTYSNRAACYTKLGAM---PEGLKDADKCIELDP-TFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLD 495 (538)
Q Consensus 420 ~~~~~~~~~la~~~~~~~~~---~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 495 (538)
+.++.+.+++|+++....+. .+++.+++..+...| ..-+.++.+|..++++|+|.+|..+.+.+++..|+|.++..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 34677888889888887754 578888988888887 45678889999999999999999999999999999988876
Q ss_pred HHHHHHHHh
Q 009278 496 GVRRCVQQI 504 (538)
Q Consensus 496 ~l~~~~~~~ 504 (538)
....+..++
T Consensus 116 Lk~~Ie~~i 124 (144)
T 1y8m_A 116 LKSMVEDKI 124 (144)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 665555444
No 230
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.83 E-value=0.00061 Score=51.13 Aligned_cols=99 Identities=8% Similarity=-0.071 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHhccCCcchHHHHHHHHHHHhcCCH---HHHHHHHHHHhccCCC-chHHHHHHHHHHhhccCHHHHHHHH
Q 009278 18 YEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNY---ADALADAKKTVELKPD-WSKGYSRLGAAHLGLQDYIEAVNSY 93 (538)
Q Consensus 18 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~ 93 (538)
.......|.+-.. ++.++.+.+++|+++.+..+. .+++..++..+...|. .-+.++.+|..+.++|+|++|..+.
T Consensus 22 L~~lr~qY~~E~~-~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~ 100 (144)
T 1y8m_A 22 LEILRQQVVSEGG-PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYV 100 (144)
T ss_dssp HHHHHHHHHHTTS-TTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHhcc-CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHH
Confidence 3344444544322 345789999999999998765 5799999999998884 6689999999999999999999999
Q ss_pred HhhhhcCCCcHHHHhhHHHHHHHH
Q 009278 94 KKGLDIDPNNEALKSGLADAKAAA 117 (538)
Q Consensus 94 ~~al~~~p~~~~~~~~l~~~~~~~ 117 (538)
+..++..|+|..+......+..+.
T Consensus 101 d~lL~~eP~n~QA~~Lk~~Ie~~i 124 (144)
T 1y8m_A 101 DTLFEHERNNKQVGALKSMVEDKI 124 (144)
T ss_dssp HHHHHTCCCCHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHH
Confidence 999999999998887766665554
No 231
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=97.82 E-value=0.00043 Score=51.20 Aligned_cols=98 Identities=8% Similarity=-0.088 Sum_probs=78.3
Q ss_pred HHHHHHHHHHhccCCcchHHHHHHHHHHHhcCCH---HHHHHHHHHHhccCCC-chHHHHHHHHHHhhccCHHHHHHHHH
Q 009278 19 EAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNY---ADALADAKKTVELKPD-WSKGYSRLGAAHLGLQDYIEAVNSYK 94 (538)
Q Consensus 19 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~ 94 (538)
....+.|.+=+ ...-++.+.+.+|+++.+..+. .+++..++..++.+|. .-+.++.+|..+.++|+|++|..+.+
T Consensus 24 ~~l~~qy~~E~-~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d 102 (134)
T 3o48_A 24 EILRQQVVSEG-GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVD 102 (134)
T ss_dssp HHHHHHHHHTT-GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHh-CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 33344444433 2223579999999999988765 5789999999999984 57899999999999999999999999
Q ss_pred hhhhcCCCcHHHHhhHHHHHHHH
Q 009278 95 KGLDIDPNNEALKSGLADAKAAA 117 (538)
Q Consensus 95 ~al~~~p~~~~~~~~l~~~~~~~ 117 (538)
.+++..|+|..+......+..+.
T Consensus 103 ~lL~~eP~N~QA~~Lk~~Ie~ki 125 (134)
T 3o48_A 103 TLFEHERNNKQVGALKSMVEDKI 125 (134)
T ss_dssp HHHTTCTTCHHHHHHHHHHHHHH
T ss_pred HHHhhCCCCHHHHHHHHHHHHHH
Confidence 99999999999887766665554
No 232
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.81 E-value=0.00021 Score=55.26 Aligned_cols=110 Identities=5% Similarity=-0.061 Sum_probs=74.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCc---------hhHhHHHHHHHHhCCchhHHHHHHHHHhcC------C-
Q 009278 391 EEREKGNEFFKQQKYPEAIQHYTESLRRNPKDP---------RTYSNRAACYTKLGAMPEGLKDADKCIELD------P- 454 (538)
Q Consensus 391 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~---------~~~~~la~~~~~~~~~~~A~~~~~~al~~~------p- 454 (538)
.++.-...++..|.|+.|+-....++....+++ .++..+|.+++..|+|..|...|++++... +
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 344555666777778888777777665533322 366777888888888888888887776431 1
Q ss_pred ------------------CchHHHHHHHHHHHHccCHHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 009278 455 ------------------TFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDGVRRCV 501 (538)
Q Consensus 455 ------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 501 (538)
.+.+..+.++.|+..+|++++|+..++.+ -..-..+.+...|+++|
T Consensus 102 ~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I-p~k~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 102 VRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI-PSRQRTPKINMLLANLY 165 (167)
T ss_dssp ---------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS-CGGGCCHHHHHHHHHHC
T ss_pred ccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC-CchhcCHHHHHHHHHHh
Confidence 12367788999999999999999887753 22234566666666654
No 233
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=97.27 E-value=0.11 Score=47.58 Aligned_cols=102 Identities=10% Similarity=0.056 Sum_probs=80.5
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHHH
Q 009278 253 EKEAGNAAYKKKEFEKAIEHYSSALELDDE------DISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIAR 326 (538)
Q Consensus 253 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 326 (538)
-..+|..|+..|+|.+|.+.+.+.++.... -.+++..-..+|...+++.++...+.++..............+.
T Consensus 102 ~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~ 181 (394)
T 3txn_A 102 EARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGA 181 (394)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHH
Confidence 347899999999999999999998875322 24667777889999999999999999998754322133344478
Q ss_pred HHHHhHHHHH-HhhhcccChhHHHHHHHHHHhc
Q 009278 327 ALTRKGTALV-KMAKCSKDYEPAIETFQKALTE 358 (538)
Q Consensus 327 ~~~~~~~~~~-~~~~~~~~~~~A~~~~~~~~~~ 358 (538)
+...-|..+. ..++ |..|...|-.++..
T Consensus 182 i~~~~Gi~~l~~~rd----yk~A~~~F~eaf~~ 210 (394)
T 3txn_A 182 LDLQSGILHAADERD----FKTAFSYFYEAFEG 210 (394)
T ss_dssp HHHHHHHHHHHTTSC----HHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHhccC----HHHHHHHHHHHHhc
Confidence 8888888888 7888 99999999888763
No 234
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=96.78 E-value=0.21 Score=45.70 Aligned_cols=94 Identities=15% Similarity=0.150 Sum_probs=72.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCC--C----chhHhHHHHHHHHhCCchhHHHHHHHHHhcC---CCch----HH
Q 009278 393 REKGNEFFKQQKYPEAIQHYTESLRRNPK--D----PRTYSNRAACYTKLGAMPEGLKDADKCIELD---PTFS----KG 459 (538)
Q Consensus 393 ~~la~~~~~~~~~~~A~~~~~~al~~~~~--~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~---p~~~----~~ 459 (538)
..+|..|+..|+|.+|.+.+.+....-.. + .+++..-..+|...+++.++...+.++.... +.+| ..
T Consensus 103 ~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i 182 (394)
T 3txn_A 103 ARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGAL 182 (394)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHH
Confidence 47899999999999999999888764222 2 3567777888999999999999999887552 1222 23
Q ss_pred HHHHHHHHH-HccCHHHHHHHHHHHhcc
Q 009278 460 YTRKGAIQF-FLKEYDKALETYQEGLKH 486 (538)
Q Consensus 460 ~~~l~~~~~-~~g~~~~A~~~~~~al~~ 486 (538)
...-|.++. ..++|..|..+|-.++.-
T Consensus 183 ~~~~Gi~~l~~~rdyk~A~~~F~eaf~~ 210 (394)
T 3txn_A 183 DLQSGILHAADERDFKTAFSYFYEAFEG 210 (394)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHhccCHHHHHHHHHHHHhc
Confidence 455688888 899999999999998753
No 235
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=96.75 E-value=0.06 Score=53.77 Aligned_cols=61 Identities=15% Similarity=0.133 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 009278 250 ALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKA 310 (538)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 310 (538)
...+...+..+..+|+++-|+.+.++++...|.+...|+.|+.+|..+|+|+.|+-.++.+
T Consensus 337 ~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 337 SDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred hHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 3455666888889999999999999999999999999999999999999999999888776
No 236
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=96.63 E-value=0.16 Score=39.19 Aligned_cols=180 Identities=18% Similarity=0.149 Sum_probs=98.4
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHh--cC
Q 009278 282 EDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALT--EH 359 (538)
Q Consensus 282 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~ 359 (538)
..++....++.++.-.|+|..++-.+.+ ++. +.+.+....++....+ +..|+..++..+. ..
T Consensus 31 ~~~eY~lL~~I~LyyngEY~R~Lf~L~~---lNT---------~Ts~YYk~LCy~klKd----YkkA~~~le~il~~kvd 94 (242)
T 3kae_A 31 CKPEYRMLMSIVLYLNGEYTRALFHLHK---LNT---------CTSKYYESLCYKKKKD----YKKAIKSLESILEGKVE 94 (242)
T ss_dssp ---CTHHHHHHHHHHTTCHHHHHHHHHT---CCB---------HHHHHHHHHHHHHTTC----HHHHHHHHHHHHTTCSB
T ss_pred CChHHHhhhhhhhhhcchHhHHHHHHHh---cch---------HHHHHHHHHHHHHHHH----HHHHHHHHHHHHhcccc
Confidence 3334555566666667777666655432 111 3344445555666666 7777777777663 22
Q ss_pred CChhHHHhhhhHHHHHHHHHHHHHcCCCchHH-HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHhHH---------
Q 009278 360 RNPDTLKKLNEAEKAKKELEQQEIFDPKIADE-EREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNR--------- 429 (538)
Q Consensus 360 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l--------- 429 (538)
.++++-.... ..-.+|.+.+. +..+|.++...|+.++|+.+|.......|-.+.+-+.+
T Consensus 95 ~d~~~d~~~~-----------~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~vEnliyeN~vp~~~ 163 (242)
T 3kae_A 95 RDPDVDARIQ-----------EMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPVENLLLENKVPQKR 163 (242)
T ss_dssp CCCCCCHHHH-----------TTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHTTCCCCCC
T ss_pred cCcccccccc-----------eeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchHHHHHhhcCCCccc
Confidence 2211100000 00045655554 56789999999999999999999988776433221100
Q ss_pred --HHHHHHhCCchhHH---------------HHHHHHHhcCCCchHH-HHHHHHHHHHccCHHHHHHHHHHHhccCCC
Q 009278 430 --AACYTKLGAMPEGL---------------KDADKCIELDPTFSKG-YTRKGAIQFFLKEYDKALETYQEGLKHDPQ 489 (538)
Q Consensus 430 --a~~~~~~~~~~~A~---------------~~~~~al~~~p~~~~~-~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 489 (538)
-.+.. .|+-.--. ...++....-|..... ....+..|+.+|..++...+|......+|.
T Consensus 164 d~~~i~~-~~~~~i~~~y~~d~~~lHe~~s~~~ikkY~n~iPGiGSY~va~aa~~yf~lg~~d~s~~lf~~lR~kDP~ 240 (242)
T 3kae_A 164 DKENVRQ-TGRRGIEEEYVSDSIEFHESLSPSLVKKYMEHVPGIGSYFISNAARRYFNLGMNDKSKACFELVRRKDPM 240 (242)
T ss_dssp ------------CHHHHHHHHHHHHHHHCCHHHHHHHHTSTTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred chHHHHh-hhhccchhhhhhhHHHHHHhccHHHHHHHHHhCCCchhHHHHHHHHHHHhcccchhHHHHHHHHHhcCCC
Confidence 00000 01100001 2222333334553332 245677888999999999999999999886
No 237
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=96.50 E-value=0.016 Score=57.80 Aligned_cols=59 Identities=15% Similarity=0.096 Sum_probs=44.3
Q ss_pred hHhHHHHHHHHhCCchhHHHHHHHHHhcCCCchHHHHHHHHHHHHccCHHHHHHHHHHH
Q 009278 425 TYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEG 483 (538)
Q Consensus 425 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 483 (538)
++...+..+...|+++-|+.+.++++...|.....|+.|+.+|..+|+++.|+-.++.+
T Consensus 339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 339 LLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 44555666677778888888888888888888888888888888888888887666655
No 238
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=96.45 E-value=0.038 Score=51.06 Aligned_cols=95 Identities=17% Similarity=0.178 Sum_probs=79.1
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHhccCCcc----------------------hHHHHHHHHHHHhcCCHHHHHHHHHH
Q 009278 4 EAKAKGNAAFSSGDYEAAVRHFTEAISLSPDN----------------------HVLYSNRSAAHASLHNYADALADAKK 61 (538)
Q Consensus 4 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----------------------~~~~~~la~~~~~~g~~~~A~~~~~~ 61 (538)
.+...|......|+.+.|...+.+++...... ..+...++..+...|++.+|+..+..
T Consensus 117 ~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~ 196 (388)
T 2ff4_A 117 AEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEA 196 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 44566667777899999999999999863211 12345667788899999999999999
Q ss_pred HhccCCCchHHHHHHHHHHhhccCHHHHHHHHHhhhh
Q 009278 62 TVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLD 98 (538)
Q Consensus 62 al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 98 (538)
++..+|-+-.++..+..++...|+..+|+..|++.-.
T Consensus 197 ~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 197 LTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999987643
No 239
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.32 E-value=0.23 Score=51.35 Aligned_cols=179 Identities=13% Similarity=0.058 Sum_probs=96.2
Q ss_pred HHHhcccHHHHHH-HHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHHHHHHHhHHHHHH
Q 009278 259 AAYKKKEFEKAIE-HYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVK 337 (538)
Q Consensus 259 ~~~~~~~~~~A~~-~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (538)
.....+++++|.. ++.. -|+ .......+..+...|.+++|+...+ +| ... ... ...
T Consensus 608 ~~~~~~~~~~a~~~~l~~----i~~-~~~~~~~~~~l~~~~~~~~a~~~~~-----~~---~~~---f~~-------~l~ 664 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPN----VEG-KDSLTKIARFLEGQEYYEEALNISP-----DQ---DQK---FEL-------ALK 664 (814)
T ss_dssp HHHHTTCHHHHHHHTGGG----CCC-HHHHHHHHHHHHHTTCHHHHHHHCC-----CH---HHH---HHH-------HHH
T ss_pred HHHHhCCHHHHHHHHHhc----CCc-hHHHHHHHHHHHhCCChHHheecCC-----Cc---chh---eeh-------hhh
Confidence 3446788888866 4311 110 1222566677777888888776542 11 110 111 223
Q ss_pred hhhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009278 338 MAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLR 417 (538)
Q Consensus 338 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 417 (538)
.++ +++|.+.. ...++...|..+|..+...++++.|+.+|.++-.
T Consensus 665 ~~~----~~~A~~~~-------------------------------~~~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d 709 (814)
T 3mkq_A 665 VGQ----LTLARDLL-------------------------------TDESAEMKWRALGDASLQRFNFKLAIEAFTNAHD 709 (814)
T ss_dssp HTC----HHHHHHHH-------------------------------TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC
T ss_pred cCC----HHHHHHHH-------------------------------HhhCcHhHHHHHHHHHHHcCCHHHHHHHHHHccC
Confidence 333 66666653 2345678999999999999999999999998622
Q ss_pred c--------CCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCchHHHHHHHHHHHHccCHHHHHHHHHHHhccCCC
Q 009278 418 R--------NPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQ 489 (538)
Q Consensus 418 ~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 489 (538)
. ...+...+..++......|++..|...|.+. .++ .....+|...+++++|+..-++ ..|.
T Consensus 710 ~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~~~A~~~~~~~-----g~~---~~a~~~~~~~~~~~~A~~lA~~---~~~~ 778 (814)
T 3mkq_A 710 LESLFLLHSSFNNKEGLVTLAKDAETTGKFNLAFNAYWIA-----GDI---QGAKDLLIKSQRFSEAAFLGST---YGLG 778 (814)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-----TCH---HHHHHHHHHTTCHHHHHHHHHH---TTCC
T ss_pred hhhhHHHHHHcCCHHHHHHHHHHHHHcCchHHHHHHHHHc-----CCH---HHHHHHHHHcCChHHHHHHHHH---hCCC
Confidence 1 1223334444455555555555554443331 111 1122344555555555543332 3444
Q ss_pred C---HHHHHHHHHHHHHhhh
Q 009278 490 N---QELLDGVRRCVQQINK 506 (538)
Q Consensus 490 ~---~~~~~~l~~~~~~~~~ 506 (538)
. +.+....+.-+...|+
T Consensus 779 ~~~i~~~~~~~~~~L~~~~~ 798 (814)
T 3mkq_A 779 DNEVNDIVTKWKENLILNGK 798 (814)
T ss_dssp HHHHHHHHHHHHHHHHTTTC
T ss_pred hHHHHHHHHHHHHHHHhccc
Confidence 3 3455555555555554
No 240
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=96.19 E-value=0.3 Score=41.42 Aligned_cols=130 Identities=12% Similarity=0.052 Sum_probs=87.7
Q ss_pred HHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHHHHHHHhHHHHHH
Q 009278 258 NAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVK 337 (538)
Q Consensus 258 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (538)
..+++.|+.++|+......++.+|.+......+..++.-.|+++.|...++.+.+++|+.... +..|..+-.
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~----a~~yr~lI~---- 76 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPG----ASQLRHLVK---- 76 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHH----HHHHHHHHH----
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHH----HHHHHHHHH----
Confidence 456788999999999999999999999999999999999999999999999999999986433 222221111
Q ss_pred hhhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009278 338 MAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLR 417 (538)
Q Consensus 338 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 417 (538)
|...=...+.-...+..+ ..|........-+......|+.++|...-.++++
T Consensus 77 ----------aE~~R~~vfaG~~~P~~~------------------g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e 128 (273)
T 1zbp_A 77 ----------AAQARKDFAQGAATAKVL------------------GENEELTKSLVSFNLSMVSQDYEQVSELALQIEE 128 (273)
T ss_dssp ----------HHHHHHHHTTSCCCEECC------------------CSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHcCCCCCCCC------------------CCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Confidence 111111122211111000 0111122233446666778999999999999988
Q ss_pred cCCCCc
Q 009278 418 RNPKDP 423 (538)
Q Consensus 418 ~~~~~~ 423 (538)
..|..+
T Consensus 129 ~ap~~~ 134 (273)
T 1zbp_A 129 LRQEKG 134 (273)
T ss_dssp HCCCCC
T ss_pred cCcccC
Confidence 877544
No 241
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.17 E-value=0.13 Score=48.51 Aligned_cols=196 Identities=11% Similarity=0.085 Sum_probs=116.8
Q ss_pred cccHHHHHHHHHHHHhh------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHHHHHHHhHHHHH
Q 009278 263 KKEFEKAIEHYSSALEL------DDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALV 336 (538)
Q Consensus 263 ~~~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (538)
.|+++.|++.+....+. .+....+...+..++...|+++...+.+.-..............+.. ...-+.
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~----~~~~~l 104 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQ----KVMEYL 104 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHH----HHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHH----HHHHHH
Confidence 47788888877554432 23356778888899999999998877765544433222111110000 000000
Q ss_pred -HhhhcccChhHHHHHHHHHHhcCCC---hhHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcCChHHHHHHH
Q 009278 337 -KMAKCSKDYEPAIETFQKALTEHRN---PDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHY 412 (538)
Q Consensus 337 -~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 412 (538)
.... .+ .......+..-.. +..+ ..-........++.++...|++.+|...+
T Consensus 105 ~~~~~----~d--~~~~~~~i~~l~~vte~kif------------------lE~erarl~~~La~i~e~~g~~~eA~~iL 160 (445)
T 4b4t_P 105 KSSKS----LD--LNTRISVIETIRVVTENKIF------------------VEVERARVTKDLVEIKKEEGKIDEAADIL 160 (445)
T ss_dssp HHHCT----TH--HHHHHHHHHCCSSSSSCCCC------------------CCHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred hcCCc----hh--HHHHHHHHHHHHHHhccchH------------------HHHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 0000 00 0111111110000 0000 00013455678899999999999999999
Q ss_pred HHHHhcCC-C-C----chhHhHHHHHHHHhCCchhHHHHHHHHHh---cCCCch----HHHHHHHHHHHHccCHHHHHHH
Q 009278 413 TESLRRNP-K-D----PRTYSNRAACYTKLGAMPEGLKDADKCIE---LDPTFS----KGYTRKGAIQFFLKEYDKALET 479 (538)
Q Consensus 413 ~~al~~~~-~-~----~~~~~~la~~~~~~~~~~~A~~~~~~al~---~~p~~~----~~~~~l~~~~~~~g~~~~A~~~ 479 (538)
.......- . + .+.+....+++...+++..|...+.++.. ..+..+ ..+...|.++...++|.+|..+
T Consensus 161 ~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~ 240 (445)
T 4b4t_P 161 CELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQY 240 (445)
T ss_dssp HHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 88753211 1 1 35778888899999999999999988742 123322 3567788899999999999999
Q ss_pred HHHHhcc
Q 009278 480 YQEGLKH 486 (538)
Q Consensus 480 ~~~al~~ 486 (538)
|..++..
T Consensus 241 y~e~~~~ 247 (445)
T 4b4t_P 241 LQEIYQT 247 (445)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 9988764
No 242
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=96.05 E-value=0.076 Score=44.96 Aligned_cols=63 Identities=22% Similarity=0.266 Sum_probs=58.5
Q ss_pred HHHHhhcCCHHHHHHHHHHHhccCCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchH
Q 009278 9 GNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSK 71 (538)
Q Consensus 9 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 71 (538)
...+++.|+.++|+......++.+|.|+.....+...+.-.|+++.|.+.++.+.+++|....
T Consensus 4 ~~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~ 66 (273)
T 1zbp_A 4 WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP 66 (273)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhH
Confidence 356789999999999999999999999999999999999999999999999999999997543
No 243
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=95.99 E-value=1.3 Score=43.38 Aligned_cols=106 Identities=10% Similarity=0.043 Sum_probs=60.8
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHHHhccCCcchHHHHHHHHHHHhcC--CHHHHHHHHHHHhccCCCchHHHHHHHHHH
Q 009278 3 DEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLH--NYADALADAKKTVELKPDWSKGYSRLGAAH 80 (538)
Q Consensus 3 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 80 (538)
...+..+...+..|++..+...-.. +...|-.+ |......-..++ ... .+...+..+|+.+..-.......
T Consensus 7 ~~~~~~a~~a~~~~~~~~~~~l~~~-l~~~pL~~--yl~y~~l~~~l~~~~~~----ev~~Fl~~~~~~p~~~~Lr~~~l 79 (618)
T 1qsa_A 7 RSRYAQIKQAWDNRQMDVVEQMMPG-LKDYPLYP--YLEYRQITDDLMNQPAV----TVTNFVRANPTLPPARTLQSRFV 79 (618)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHSGG-GTTSTTHH--HHHHHHHHHTGGGCCHH----HHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHh-hcCCCcHH--HHHHHHHHhCcccCCHH----HHHHHHHHCCCChhHHHHHHHHH
Confidence 3567888999999999877766443 34455422 222222222223 344 34444566888876655444443
Q ss_pred h---hccCHHHHHHHHHhhhhcCCCcHHHHhhHHHHHHHHhh
Q 009278 81 L---GLQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASA 119 (538)
Q Consensus 81 ~---~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 119 (538)
. +.+++..-+..|.. .|.+..............|+
T Consensus 80 ~~l~~~~~w~~~l~~~~~----~p~~~~~~c~~~~A~~~~G~ 117 (618)
T 1qsa_A 80 NELARREDWRGLLAFSPE----KPGTTEAQCNYYYAKWNTGQ 117 (618)
T ss_dssp HHHHHTTCHHHHHHHCCS----CCSSHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCCHHHHHHhccC----CCCCHHHHHHHHHHHHHcCC
Confidence 3 35566666654443 37777776666666666554
No 244
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=95.77 E-value=0.065 Score=50.87 Aligned_cols=80 Identities=13% Similarity=0.024 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCchHHHHHHHHHHHH
Q 009278 390 DEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFF 469 (538)
Q Consensus 390 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 469 (538)
..+..+|++......+..|..+|.+|+.+.|.+...++.+|.+....|+.-+|+-+|-+++......+.+..++...+.+
T Consensus 153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence 35567888888888888888888888888888888888888888888888888888888887766678888888777654
No 245
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.74 E-value=0.041 Score=51.67 Aligned_cols=102 Identities=10% Similarity=-0.084 Sum_probs=80.9
Q ss_pred CCchHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC---chhHhHHHHHHHHhCCchhHHHHHHHHHhcC--CCchH--
Q 009278 386 PKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKD---PRTYSNRAACYTKLGAMPEGLKDADKCIELD--PTFSK-- 458 (538)
Q Consensus 386 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~-- 458 (538)
.....++..+|..+...|++++|.+.|.++....... ...+.....++...+++..+..++.++-... ..++.
T Consensus 128 ~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~ 207 (429)
T 4b4t_R 128 LEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERR 207 (429)
T ss_dssp CCCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHH
Confidence 3455678899999999999999999999988764433 4678888899999999999999999987652 22222
Q ss_pred --HHHHHHHHHHHccCHHHHHHHHHHHhccC
Q 009278 459 --GYTRKGAIQFFLKEYDKALETYQEGLKHD 487 (538)
Q Consensus 459 --~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 487 (538)
.....|.++...++|.+|...|-.++...
T Consensus 208 ~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 208 NRYKTYYGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp HHHHHHHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhChHHHHHHHHHHHhccC
Confidence 33456777888999999999999887654
No 246
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=95.60 E-value=0.16 Score=46.83 Aligned_cols=87 Identities=13% Similarity=0.100 Sum_probs=65.5
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCc----------------------hhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCc
Q 009278 399 FFKQQKYPEAIQHYTESLRRNPKDP----------------------RTYSNRAACYTKLGAMPEGLKDADKCIELDPTF 456 (538)
Q Consensus 399 ~~~~~~~~~A~~~~~~al~~~~~~~----------------------~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 456 (538)
....|+.+.|...+.+++.+....+ .+...++..+...|++.+|+..+..++..+|-+
T Consensus 125 ~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~ 204 (388)
T 2ff4_A 125 AAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYR 204 (388)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3445777777788888777643221 123346667778888999998888888888888
Q ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHhc
Q 009278 457 SKGYTRKGAIQFFLKEYDKALETYQEGLK 485 (538)
Q Consensus 457 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 485 (538)
-.++..+-.++...|+..+|+..|+++..
T Consensus 205 E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 205 EPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 88888888888889998888888887643
No 247
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=95.56 E-value=0.59 Score=36.09 Aligned_cols=97 Identities=14% Similarity=0.120 Sum_probs=77.3
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHhccCCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhc--c--C-------------CC
Q 009278 6 KAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVE--L--K-------------PD 68 (538)
Q Consensus 6 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~--~-------------p~ 68 (538)
...+..++-.|+|..++-.+.+. +.....+..+.||..+++|..|+..++..+. . + |.
T Consensus 37 lL~~I~LyyngEY~R~Lf~L~~l-----NT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~ 111 (242)
T 3kae_A 37 MLMSIVLYLNGEYTRALFHLHKL-----NTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPG 111 (242)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTC-----CBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTT
T ss_pred hhhhhhhhhcchHhHHHHHHHhc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccc
Confidence 34677888899999988876542 4577888899999999999999999999983 2 2 33
Q ss_pred chH-HHHHHHHHHhhccCHHHHHHHHHhhhhcCCCcHHHH
Q 009278 69 WSK-GYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNEALK 107 (538)
Q Consensus 69 ~~~-~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 107 (538)
+.+ .+..+|.+....|+.++|+.+|......+|--+.+.
T Consensus 112 DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~vE 151 (242)
T 3kae_A 112 DEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPVE 151 (242)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchHH
Confidence 333 456789999999999999999999999888665543
No 248
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.42 E-value=1.8 Score=40.72 Aligned_cols=106 Identities=9% Similarity=0.053 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCC--C----CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhH
Q 009278 248 EKALKEKEAGNAAYKKKEFEKAIEHYSSALELDD--E----DISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDF 321 (538)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p--~----~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 321 (538)
..+.....++.++...|++.+|...+.......- . -.+++.....++...+++.+|...++++....-......
T Consensus 135 erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~ 214 (445)
T 4b4t_P 135 ERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYE 214 (445)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCH
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcH
Confidence 3566677899999999999999999999764311 1 146778889999999999999999999754222222222
Q ss_pred HHHHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHh
Q 009278 322 KMIARALTRKGTALVKMAKCSKDYEPAIETFQKALT 357 (538)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 357 (538)
...+..+...|.++...++ |.+|-.+|..++.
T Consensus 215 ~lk~~~~~~~~~~~~~e~~----y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 215 SLKLEYYNLLVKISLHKRE----YLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHHHHHHHCC----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhh----HHHHHHHHHHHHh
Confidence 3336777888888888888 9999999999887
No 249
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=95.30 E-value=0.099 Score=49.63 Aligned_cols=71 Identities=13% Similarity=0.045 Sum_probs=61.5
Q ss_pred HhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHhHHHHHHHHh
Q 009278 366 KKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKL 436 (538)
Q Consensus 366 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~ 436 (538)
.....+..|..+|.++....|.+...++.+|.+....|+.-+|+-+|-+++......+.+..++...+...
T Consensus 163 RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~~ 233 (497)
T 1ya0_A 163 RYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKA 233 (497)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Confidence 33345678999999999999999999999999999999999999999999987777888888888877653
No 250
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.10 E-value=0.69 Score=36.55 Aligned_cols=99 Identities=12% Similarity=0.059 Sum_probs=65.9
Q ss_pred hhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHhHHHHHHHHhCCchhHHHHH
Q 009278 367 KLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDA 446 (538)
Q Consensus 367 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 446 (538)
..|+++.|.+..+.. ++...|..+|......|+++-|..+|.++-. +..+..+|...|+.+.-.+.-
T Consensus 17 ~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D--------~~~L~~Ly~~tg~~e~L~kla 83 (177)
T 3mkq_B 17 EYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHS--------FDKLSFLYLVTGDVNKLSKMQ 83 (177)
T ss_dssp HTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC--------HHHHHHHHHHHTCHHHHHHHH
T ss_pred hcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC--------HHHHHHHHHHhCCHHHHHHHH
Confidence 355566665555443 5678899999999999999999999987532 334555667777776655555
Q ss_pred HHHHhcCCCchHHHHHHHHHHHHccCHHHHHHHHHHH
Q 009278 447 DKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEG 483 (538)
Q Consensus 447 ~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 483 (538)
+.+..... +.....+++.+|+++++++.|.+.
T Consensus 84 ~iA~~~g~-----~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 84 NIAQTRED-----FGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHTTC-----HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHCcc-----HHHHHHHHHHcCCHHHHHHHHHHC
Confidence 55443322 122344566788888888887655
No 251
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.71 E-value=0.74 Score=36.36 Aligned_cols=49 Identities=10% Similarity=0.006 Sum_probs=40.9
Q ss_pred HHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 009278 258 NAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAV 311 (538)
Q Consensus 258 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 311 (538)
......|+++.|.+..+.. ++...|..+|......|+++-|..+|.++-
T Consensus 13 ~LAL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~ 61 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQH 61 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred HHHHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhC
Confidence 3456789999999887765 678889999999999999999999998753
No 252
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.63 E-value=0.089 Score=49.38 Aligned_cols=99 Identities=10% Similarity=0.011 Sum_probs=79.4
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHHHhccCC---cchHHHHHHHHHHHhcCCHHHHHHHHHHHhccCC--Cc----hHHH
Q 009278 3 DEAKAKGNAAFSSGDYEAAVRHFTEAISLSP---DNHVLYSNRSAAHASLHNYADALADAKKTVELKP--DW----SKGY 73 (538)
Q Consensus 3 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~----~~~~ 73 (538)
.++..+|..++..|++++|++.|.++..... .-.+.+.....+++..+++..+...+.++..... .+ ....
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 4567899999999999999999999877532 2458888999999999999999999999865421 12 1344
Q ss_pred HHHHHHHhhccCHHHHHHHHHhhhhcCC
Q 009278 74 SRLGAAHLGLQDYIEAVNSYKKGLDIDP 101 (538)
Q Consensus 74 ~~la~~~~~~~~~~~A~~~~~~al~~~p 101 (538)
...|.++...++|.+|...|-.++....
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t~~ 239 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLATFT 239 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhccCC
Confidence 5678888899999999999998876543
No 253
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.25 E-value=1.7 Score=41.11 Aligned_cols=202 Identities=13% Similarity=0.054 Sum_probs=83.2
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHh-----------hCCCCHHHHHHHHHHHHHhCCHHHHHH----------HHHHHH
Q 009278 253 EKEAGNAAYKKKEFEKAIEHYSSALE-----------LDDEDISYLTNRAAVYLEMGKYEECIK----------DCDKAV 311 (538)
Q Consensus 253 ~~~~~~~~~~~~~~~~A~~~~~~al~-----------~~p~~~~~~~~la~~~~~~~~~~~A~~----------~~~~~~ 311 (538)
+...-..++..+++++|..+-...+. +++-...+|+..+.++...|+...... .+-.++
T Consensus 139 ~lL~~i~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~ 218 (523)
T 4b4t_S 139 HLLVQLFLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFL 218 (523)
T ss_dssp ----------------------------------------------------------------CHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHH
Confidence 33344456788999999888776651 133345678888888887777655322 222222
Q ss_pred Hccc--cchhhHHHHHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCch
Q 009278 312 ERGR--ELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIA 389 (538)
Q Consensus 312 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 389 (538)
...- .+... .+..+..+-+.|...+. +++|.....++.- |.... .+....
T Consensus 219 rta~lr~D~~~---qa~l~nllLRnYL~~~~----y~qA~~lvsk~~f--P~~~~-------------------sn~q~~ 270 (523)
T 4b4t_S 219 KIASLKHDNET---KAMLINLILRDFLNNGE----VDSASDFISKLEY--PHTDV-------------------SSSLEA 270 (523)
T ss_dssp HHCCSCSSSCH---HHHHHHHHHHHHHHSSC----STTHHHHHHHHCS--CTTTS-------------------CHHHHH
T ss_pred HHHhcccCcch---hHHHHHHHHHHHHccCc----HHHHHHHHhcCcC--CcccC-------------------CHHHHH
Confidence 2111 11111 15566666677777777 9999998888742 21100 011224
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCch-------hHhHHHHHHHHhCCchhHHHHHHHHHhcCCCc---hHH
Q 009278 390 DEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPR-------TYSNRAACYTKLGAMPEGLKDADKCIELDPTF---SKG 459 (538)
Q Consensus 390 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~-------~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~ 459 (538)
..++.+|.++.-.++|.+|.+++..|+...|.+.. ++-.+..+-.-+|+..+-.- |. .|.. ...
T Consensus 271 rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~a~gfr~~a~K~lI~V~LLlG~iP~r~l-f~-----q~~l~~~L~p 344 (523)
T 4b4t_S 271 RYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSKSLGFLQQSNKLHCCIQLLMGDIPELSF-FH-----QSNMQKSLLP 344 (523)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSSSCSHHHHHHHHHHHHHHHHHTCCCCHHH-HT-----TTSCHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchhhhhHHHHHHHHHHhHHhhcCCCCChHH-hh-----chhHHHHHHH
Confidence 56778999999999999999999999998886542 22223334444687664221 11 1221 233
Q ss_pred HHHHHHHHHHccC---HHHHHHHHHHHhccCCC
Q 009278 460 YTRKGAIQFFLKE---YDKALETYQEGLKHDPQ 489 (538)
Q Consensus 460 ~~~l~~~~~~~g~---~~~A~~~~~~al~~~p~ 489 (538)
|+.++.++ +.|+ +..+++-++..+..+..
T Consensus 345 Y~~Lv~Av-r~GdL~~F~~~L~~h~~~F~~Dgt 376 (523)
T 4b4t_S 345 YYHLTKAV-KLGDLKKFTSTITKYKQLLLKDDT 376 (523)
T ss_dssp HHHHHHHH-HHTCHHHHHHHHHHTHHHHHHTTC
T ss_pred HHHHHHHH-HcCCHHHHHHHHHHhcceeccCCh
Confidence 55566664 4455 44455555555555543
No 254
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=94.16 E-value=0.52 Score=48.49 Aligned_cols=95 Identities=8% Similarity=-0.090 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhc----CCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhc--CCCchHHHHHH
Q 009278 390 DEEREKGNEFFKQQKYPEAIQHYTESLRR----NPKDPRTYSNRAACYTKLGAMPEGLKDADKCIEL--DPTFSKGYTRK 463 (538)
Q Consensus 390 ~~~~~la~~~~~~~~~~~A~~~~~~al~~----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l 463 (538)
..+..+-..|.+.|+.++|..+|....+. ..-+...|+.+...|.+.|+.++|.+.|++..+. .| +..+|..+
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~P-DvvTYntL 206 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTP-DLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC-CHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-cHHHHHHH
Confidence 34556666677777777777777554321 1225566677777777777777777777766654 34 35566666
Q ss_pred HHHHHHccC-HHHHHHHHHHHhc
Q 009278 464 GAIQFFLKE-YDKALETYQEGLK 485 (538)
Q Consensus 464 ~~~~~~~g~-~~~A~~~~~~al~ 485 (538)
-.++.+.|+ .++|...|++...
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~ 229 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQ 229 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHH
Confidence 666666665 3566666666655
No 255
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=94.03 E-value=3.8 Score=43.98 Aligned_cols=56 Identities=9% Similarity=0.002 Sum_probs=43.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHHHHHhhccCHHHHHHHHHhhhh
Q 009278 39 YSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLD 98 (538)
Q Consensus 39 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 98 (538)
...+...+...|.++-+.+ .+...|.++...+.+|.+++..|++++|..+|+++-.
T Consensus 815 ~~~l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~ 870 (1139)
T 4fhn_B 815 VTELVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL 870 (1139)
T ss_dssp HHHHHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Confidence 3445666777788776654 3445677777789999999999999999999998753
No 256
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.89 E-value=0.1 Score=49.08 Aligned_cols=105 Identities=12% Similarity=0.017 Sum_probs=59.6
Q ss_pred cCCCchHHHHHHHHHHHhcCChHHHH----------HHHHHHHhc-----CCC-CchhHhHHHHHHHHhCCchhHHHHHH
Q 009278 384 FDPKIADEEREKGNEFFKQQKYPEAI----------QHYTESLRR-----NPK-DPRTYSNRAACYTKLGAMPEGLKDAD 447 (538)
Q Consensus 384 ~~~~~~~~~~~la~~~~~~~~~~~A~----------~~~~~al~~-----~~~-~~~~~~~la~~~~~~~~~~~A~~~~~ 447 (538)
+++-.+.+|+..+.++...|+..... ..+-.++.. ++. ...+++.+-+.|...+.++.|..+..
T Consensus 176 lD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvs 255 (523)
T 4b4t_S 176 LNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKHDNETKAMLINLILRDFLNNGEVDSASDFIS 255 (523)
T ss_dssp ---------------------------CHHHHHHHHTHHHHHHHHCCSCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHccCcHHHHHHHHh
Confidence 35556777888888887777765432 122222221 221 24578888999999999999999999
Q ss_pred HHHhcCCCc-------hHHHHHHHHHHHHccCHHHHHHHHHHHhccCCCC
Q 009278 448 KCIELDPTF-------SKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQN 490 (538)
Q Consensus 448 ~al~~~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 490 (538)
++. .|.. ...++.+|.++.-+++|.+|.+++..|+...|.+
T Consensus 256 k~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~ 303 (523)
T 4b4t_S 256 KLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHN 303 (523)
T ss_dssp HHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred cCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence 985 3432 4567889999999999999999999999988765
No 257
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=93.19 E-value=2.8 Score=43.36 Aligned_cols=105 Identities=4% Similarity=-0.086 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhh----CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--cccchhhH
Q 009278 248 EKALKEKEAGNAAYKKKEFEKAIEHYSSALEL----DDEDISYLTNRAAVYLEMGKYEECIKDCDKAVER--GRELRSDF 321 (538)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~ 321 (538)
.....+..+-..+.+.|+.++|..+|.+..+. ..-+...|..+...|.+.|+.++|..+|++.... .|+
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PD----- 199 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPD----- 199 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCC-----
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCc-----
Confidence 34556888899999999999999999775432 3446789999999999999999999999999874 354
Q ss_pred HHHHHHHHHhHHHHHHhhhcccCh-hHHHHHHHHHHhcCCChhH
Q 009278 322 KMIARALTRKGTALVKMAKCSKDY-EPAIETFQKALTEHRNPDT 364 (538)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~ 364 (538)
..+|..+-..+.+.|+ . ++|...+++.....-.++.
T Consensus 200 ---vvTYntLI~glcK~G~----~~e~A~~Ll~EM~~kG~~PD~ 236 (1134)
T 3spa_A 200 ---LLSYAAALQCMGRQDQ----DAGTIERCLEQMSQEGLKLQA 236 (1134)
T ss_dssp ---HHHHHHHHHHHHHHTC----CHHHHHHHHHHHHHHTCCSHH
T ss_pred ---HHHHHHHHHHHHhCCC----cHHHHHHHHHHHHHcCCCCCh
Confidence 3445555555666555 5 6788999999987655543
No 258
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=93.11 E-value=0.99 Score=46.51 Aligned_cols=47 Identities=13% Similarity=0.061 Sum_probs=38.6
Q ss_pred HHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 009278 259 AAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKA 310 (538)
Q Consensus 259 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 310 (538)
.....|+++.|.+..+. .++...|..+|..+...++++.|+.+|.++
T Consensus 661 ~~l~~~~~~~A~~~~~~-----~~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 661 LALKVGQLTLARDLLTD-----ESAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHTCHHHHHHHHTT-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhhcCCHHHHHHHHHh-----hCcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 44567788888777543 357889999999999999999999999986
No 259
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=93.10 E-value=4.3 Score=35.69 Aligned_cols=67 Identities=10% Similarity=0.051 Sum_probs=46.5
Q ss_pred CCCchHHHHHHHHHHHhcCChHHHHHHHHHHH----------------h---cCCCCchhHhHHHH-HHHHhCCchhHHH
Q 009278 385 DPKIADEEREKGNEFFKQQKYPEAIQHYTESL----------------R---RNPKDPRTYSNRAA-CYTKLGAMPEGLK 444 (538)
Q Consensus 385 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al----------------~---~~~~~~~~~~~la~-~~~~~~~~~~A~~ 444 (538)
.-.++..+..+|..+...|++.+|..+|-..- + -.|.....+...+. .|...|+...|..
T Consensus 130 ~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~RaVL~yL~l~n~~~A~~ 209 (312)
T 2wpv_A 130 KFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDSTVAEFFSRLVFNYLFISNISFAHE 209 (312)
T ss_dssp TTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHTTBHHHHHH
T ss_pred CCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHhcCHHHHHH
Confidence 34688999999999999999999999874210 1 12233444545544 3677888888888
Q ss_pred HHHHHHh
Q 009278 445 DADKCIE 451 (538)
Q Consensus 445 ~~~~al~ 451 (538)
.+....+
T Consensus 210 ~~~~f~~ 216 (312)
T 2wpv_A 210 SKDIFLE 216 (312)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8776553
No 260
>2llv_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}
Probab=92.44 E-value=0.041 Score=35.93 Aligned_cols=64 Identities=20% Similarity=0.440 Sum_probs=56.4
Q ss_pred cccccccCCchhhcccCCCCCCCcccHHHHHHHHHhhhcCCCchhh-hhchHHHHHHHHHHHhhh
Q 009278 131 PFGSAFAGPEMWAKLTADPTTRSYLDQDDFRNMMKDIQRNPNNLNL-YLKDQRVMQALGVLLNVK 194 (538)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 194 (538)
.++..|..++.+..+..+|....++.+..+...++.+..+|.++.. ++.++++...++.+.++.
T Consensus 5 ~~~~~f~~p~~~~kl~~dP~t~~~~~DP~~~~~lq~i~~NP~~i~~~~~~dPrv~~~l~~L~g~~ 69 (71)
T 2llv_A 5 GLTQLFADPNLIENLKKNPKTSEMMKDPQLVAKLIGYKQNPQAIGQDLFTDPRLMTIMATLMGVD 69 (71)
T ss_dssp CCHHHHHSSSCHHHHHHSSTTHHHHHSCTHHHHHHHHHHSCTTHHHHTTTCHHHHHHHHHHHTTT
T ss_pred hHhhhccChHHHHHHHcChHHHHHhcCHHHHHHHHHHHHCHHHHHHHHhhCcHHHHHHHHHHcCC
Confidence 4455666778888999999999999999999999999999999999 999999999999887553
No 261
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=92.29 E-value=9.2 Score=37.54 Aligned_cols=86 Identities=15% Similarity=0.014 Sum_probs=49.5
Q ss_pred HHHHHhccCCcchHHHHHHHHHH---HhcCCHHHHHHHHHHHhccCCCchHHHHHHHHHHhhccCHHHHHHHHHhhhhcC
Q 009278 24 HFTEAISLSPDNHVLYSNRSAAH---ASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDID 100 (538)
Q Consensus 24 ~~~~al~~~p~~~~~~~~la~~~---~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 100 (538)
.+...+...|+.+..-....... .+.+++..-+.++.. .|.+...-+..+......|+..+|.....++-...
T Consensus 57 ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~l~~~~~----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~ 132 (618)
T 1qsa_A 57 TVTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFSPE----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG 132 (618)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCCS----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHCCCChhHHHHHHHHHHHHHhCCCHHHHHHhccC----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC
Confidence 33444556676664444333332 335567666664443 37777777777777778888777777777665544
Q ss_pred CCcHHHHhhHHHH
Q 009278 101 PNNEALKSGLADA 113 (538)
Q Consensus 101 p~~~~~~~~l~~~ 113 (538)
...+.....+...
T Consensus 133 ~~~p~~c~~l~~~ 145 (618)
T 1qsa_A 133 KSQPNACDKLFSV 145 (618)
T ss_dssp SCCCTHHHHHHHH
T ss_pred CCCcHHHHHHHHH
Confidence 4444444433333
No 262
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=91.18 E-value=1.6e-05 Score=72.73 Aligned_cols=81 Identities=15% Similarity=0.086 Sum_probs=58.1
Q ss_pred cchHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHHHHHhhccCHHHHHHHHHhhhhcCCCcHHHHhhHHHH
Q 009278 34 DNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNEALKSGLADA 113 (538)
Q Consensus 34 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 113 (538)
+.+.+|..+|.+++..++..+|++.|-++ +++..+.....+..+.|.+++=+.++.-+-+. -..+.+-..|..+
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsyIkA-----~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~-~ke~~IDteLi~a 125 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKK-ARESYVETELIFA 125 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSSCCC-----SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT-CCSTTTTHHHHHH
T ss_pred CCccHHHHHHHHHHccCchHHHHHHHHhC-----CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-hcccccHHHHHHH
Confidence 35789999999999999999999888654 34444566667777889999988888777654 3444444556666
Q ss_pred HHHHhhc
Q 009278 114 KAAASAS 120 (538)
Q Consensus 114 ~~~~~~~ 120 (538)
|.+.++.
T Consensus 126 yAk~~rL 132 (624)
T 3lvg_A 126 LAKTNRL 132 (624)
T ss_dssp HHTSCSS
T ss_pred HHhhCcH
Confidence 6665443
No 263
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=90.73 E-value=1.9 Score=46.21 Aligned_cols=123 Identities=10% Similarity=-0.087 Sum_probs=80.2
Q ss_pred HcCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhcC-CC----------------------CchhHhHHHHHHHHhCCc
Q 009278 383 IFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRN-PK----------------------DPRTYSNRAACYTKLGAM 439 (538)
Q Consensus 383 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~----------------------~~~~~~~la~~~~~~~~~ 439 (538)
...|.++...+.+|.++...|++++|..+|+++-.-- .. .+..|..+..++...|.+
T Consensus 836 ~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~ 915 (1139)
T 4fhn_B 836 GWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAY 915 (1139)
T ss_dssp HHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCC
T ss_pred hhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCH
Confidence 3456677777888999999999999999998763211 00 113455667778888888
Q ss_pred hhHHHHHHHHHhcCCCc-h----HHHHHHHHHHHHccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhh
Q 009278 440 PEGLKDADKCIELDPTF-S----KGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDGVRRCVQQINK 506 (538)
Q Consensus 440 ~~A~~~~~~al~~~p~~-~----~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 506 (538)
+.++++...|++..+.+ . ..|..+-..+...|+|++|...+...-. .....+.+..|...+...|+
T Consensus 916 ~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd-~~~r~~cLr~LV~~lce~~~ 986 (1139)
T 4fhn_B 916 IDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLST-TPLKKSCLLDFVNQLTKQGK 986 (1139)
T ss_dssp HHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHH-SSSCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCC-HHHHHHHHHHHHHHHHhCCC
Confidence 88888888888765432 2 1466667777888888888776644321 12234555555555554443
No 264
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=89.95 E-value=9.9 Score=33.67 Aligned_cols=122 Identities=10% Similarity=0.096 Sum_probs=76.1
Q ss_pred CCCchHHHHHHHHHHHhcCChHHHHHHHHH-------HH---------hcCCCCchhHhHHHHH-HHHhCCchhHHHHHH
Q 009278 385 DPKIADEEREKGNEFFKQQKYPEAIQHYTE-------SL---------RRNPKDPRTYSNRAAC-YTKLGAMPEGLKDAD 447 (538)
Q Consensus 385 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~-------al---------~~~~~~~~~~~~la~~-~~~~~~~~~A~~~~~ 447 (538)
.-.++..+..+|..|.+.+++.+|..+|-. .+ +..|.....+...+.+ |...++...|...+.
T Consensus 132 ~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e~dlfiaRaVL~yL~l~n~~~A~~~~~ 211 (336)
T 3lpz_A 132 PAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHTAPLYCARAVLPYLLVANVRAANTAYR 211 (336)
T ss_dssp TTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 456789999999999999999999887721 00 1123334555555554 788899998888665
Q ss_pred HHHh----cCC------------------CchHH-HHHHHHHHHHccC---HHHHHHHHHHHhccCC-CCHHHHHHHHHH
Q 009278 448 KCIE----LDP------------------TFSKG-YTRKGAIQFFLKE---YDKALETYQEGLKHDP-QNQELLDGVRRC 500 (538)
Q Consensus 448 ~al~----~~p------------------~~~~~-~~~l~~~~~~~g~---~~~A~~~~~~al~~~p-~~~~~~~~l~~~ 500 (538)
...+ .+| ..|.. ...+-.+-...+. +..-.+.|...++.+| .-...+..++..
T Consensus 212 ~f~~~l~~~~p~L~~q~~~~~~~~~~~~p~~PLLNFl~lLllt~q~~~~~lF~~L~~~Y~~~l~rd~~~~~~~L~~IG~~ 291 (336)
T 3lpz_A 212 IFTSALVEDNKGLTVQNIGSQSAELRIFPSLPLLNFISMLLLSVQKGSPDLFRQLKSKYEANLNELNGIWDTALELIAEM 291 (336)
T ss_dssp HHHHHHHHHCTTSCCEESCC--CCCEECTTCHHHHHHHHHHHHHHSCCHHHHHHHHHHTHHHHHTTTTTTHHHHHHHHHH
T ss_pred HHHHHHhhcCCCccccccccCCcccccCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHH
Confidence 5443 223 22221 1112222233443 4455666677777777 778888888888
Q ss_pred HHHhhh
Q 009278 501 VQQINK 506 (538)
Q Consensus 501 ~~~~~~ 506 (538)
+..+..
T Consensus 292 YFgi~~ 297 (336)
T 3lpz_A 292 YFGIQR 297 (336)
T ss_dssp HHCCCC
T ss_pred HcCCCC
Confidence 876643
No 265
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=89.46 E-value=21 Score=36.78 Aligned_cols=260 Identities=10% Similarity=0.001 Sum_probs=124.7
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhhC-CCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHcccc---chhhHH
Q 009278 251 LKEKEAGNAAYKKKEFEKAIEHYSSALELD-DED----ISYLTNRAAVYLEMGKYEECIKDCDKAVERGRE---LRSDFK 322 (538)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~ 322 (538)
.+...+|.+ ..|+.++++..+.+.+... .++ ..+.+.+|.++...+ .+++..+...+..... ......
T Consensus 377 sA~aSLGlI--h~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~--~~~~~lL~~~L~~~~~~~~~~~~~~ 452 (963)
T 4ady_A 377 TATASLGVI--HKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFG--RDTTDYLKNIIVENSGTSGDEDVDV 452 (963)
T ss_dssp HHHHHHHHH--TSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTT--HHHHHHHHHHHHHHSSCCSCHHHHH
T ss_pred HHHHHhhhh--ccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHcCccccccccccHH
Confidence 334444444 4577778888888877532 222 345677777776655 4688888887764320 000111
Q ss_pred HHHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHhcCCCh---hHHHhh-------hhHHHHHHHHHHHHHcCCCchHHH
Q 009278 323 MIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNP---DTLKKL-------NEAEKAKKELEQQEIFDPKIADEE 392 (538)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~-------~~~~~a~~~~~~~~~~~~~~~~~~ 392 (538)
....+...+|.++...++ +++.+.+...+...... .....+ ++.+-....+..+.....+...-.
T Consensus 453 ir~gAaLGLGla~~GS~~-----eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~ 527 (963)
T 4ady_A 453 LLHGASLGIGLAAMGSAN-----IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRG 527 (963)
T ss_dssp HHHHHHHHHHHHSTTCCC-----HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCC-----HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHH
Confidence 112344566665554433 56777777777633211 011112 222222223333333333322223
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCchh----HhHHHHHHHHhCCchhHHHHHHHHHhcCCCchHHHHHHHHHHH
Q 009278 393 REKGNEFFKQQKYPEAIQHYTESLRRNPKDPRT----YSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQF 468 (538)
Q Consensus 393 ~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~----~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 468 (538)
..+|..+...|+.+.+....+...... ++.+ -+.+|..|...|+...-...+..+..-..++..-..-+|....
T Consensus 528 aalgLGll~~g~~e~~~~li~~L~~~~--dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~~d~VRraAViaLGlI 605 (963)
T 4ady_A 528 LAVGLALINYGRQELADDLITKMLASD--ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSNDDVRRAAVIALGFV 605 (963)
T ss_dssp HHHHHHHHTTTCGGGGHHHHHHHHHCS--CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhCCChHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCCcHHHHHHHHHHHHhh
Confidence 344444556677666666555544322 3322 3345666667777543333555555432223332223333333
Q ss_pred HccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhccCCCChHHHHHHHHhccCC
Q 009278 469 FLKEYDKALETYQEGLKHDPQNQELLDGVRRCVQQINKAGRGELSPEELKERQAKGMQD 527 (538)
Q Consensus 469 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 527 (538)
..|+.+.+...+....+ -.++.+....+.++..++-- .-..++...+.+...|
T Consensus 606 ~~g~~e~v~rlv~~L~~--~~d~~VR~gAalALGli~aG----n~~~~aid~L~~L~~D 658 (963)
T 4ady_A 606 LLRDYTTVPRIVQLLSK--SHNAHVRCGTAFALGIACAG----KGLQSAIDVLDPLTKD 658 (963)
T ss_dssp TSSSCSSHHHHTTTGGG--CSCHHHHHHHHHHHHHHTSS----SCCHHHHHHHHHHHTC
T ss_pred ccCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHhccC----CCcHHHHHHHHHHccC
Confidence 44554433333332222 33566766666665554311 1123345556555553
No 266
>2lnm_A Protein TIC 40, chloroplastic; translocon, import, TIC40-NP, protein transport; NMR {Arabidopsis thaliana}
Probab=83.15 E-value=0.49 Score=29.85 Aligned_cols=55 Identities=18% Similarity=0.345 Sum_probs=48.7
Q ss_pred chhhcccCCCCCCCcccHHHHHHHHHhhhcCCCchhhhhchHHHHHHHHHHHhhh
Q 009278 140 EMWAKLTADPTTRSYLDQDDFRNMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVK 194 (538)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (538)
+.+.++..+|.+..++.+..+......+..+|.....|+.++++...++.+.+..
T Consensus 3 e~~~kl~~dPe~~~~m~dP~~~~~lq~i~~NP~~~~~~~~dP~v~~~~~~L~~~~ 57 (62)
T 2lnm_A 3 EVISKIMENPDVAMAFQNPRVQAALMECSENPMNIMKYQNDKEVMDVFNKISQLF 57 (62)
T ss_dssp HHHHHHTTSHHHHHHTTSHHHHHHHHHHTTCGGGHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHcChHHHHHcCCHHHHHHHHHHHHCHHHHHHHHhChHHHHHHHHHHHHh
Confidence 4566778888888899999999999999999999999999999999999887765
No 267
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=81.47 E-value=5.2 Score=25.98 Aligned_cols=39 Identities=18% Similarity=0.282 Sum_probs=29.8
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHhccCCCCHHHHHHHHH
Q 009278 461 TRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDGVRR 499 (538)
Q Consensus 461 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 499 (538)
..+|..+...|++++|..+|-+|+...|+-.+.+..+-+
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~LL~i~q~ 59 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLLQVLQQ 59 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 457888888888888888888888888887766554433
No 268
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=81.25 E-value=3.9 Score=27.27 Aligned_cols=29 Identities=28% Similarity=0.516 Sum_probs=19.0
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHHHhcc
Q 009278 3 DEAKAKGNAAFSSGDYEAAVRHFTEAISL 31 (538)
Q Consensus 3 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~ 31 (538)
..++..|..+++.++|.+|...|+++...
T Consensus 54 r~~i~eak~~y~~~ny~ea~~l~~k~~n~ 82 (106)
T 2vkj_A 54 RSLIAEGKDLFETANYGEALVFFEKALNL 82 (106)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHcc
Confidence 34556666777777777777777776643
No 269
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=81.06 E-value=20 Score=37.55 Aligned_cols=95 Identities=16% Similarity=0.113 Sum_probs=71.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhc-CC------------------
Q 009278 394 EKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIEL-DP------------------ 454 (538)
Q Consensus 394 ~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~p------------------ 454 (538)
.+...+...|.++-|. ..+...|.++..-+.+|.+|...|++++|..+|+++-.- .+
T Consensus 815 ~l~~~L~~~~~~~~a~----eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~ 890 (950)
T 4gq2_M 815 ELVEKLFLFKQYNACM----QLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 890 (950)
T ss_dssp HHHHHHHHTTCHHHHH----HHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHT
T ss_pred HHHHHHHHhcHHHHHH----HHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcc
Confidence 3556667777776544 355677888878889999999999999999999876521 00
Q ss_pred --C--chHHHHHHHHHHHHccCHHHHHHHHHHHhcc-CCCCHH
Q 009278 455 --T--FSKGYTRKGAIQFFLKEYDKALETYQEGLKH-DPQNQE 492 (538)
Q Consensus 455 --~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~ 492 (538)
+ ....|.....++.+.+-++-++..-+.|++. .++++.
T Consensus 891 e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~ 933 (950)
T 4gq2_M 891 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDED 933 (950)
T ss_dssp TTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHH
T ss_pred cccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCcc
Confidence 0 1236778888999999999999999999974 456655
No 270
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=80.56 E-value=3.8 Score=26.65 Aligned_cols=29 Identities=34% Similarity=0.589 Sum_probs=18.3
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHhccCCc
Q 009278 6 KAKGNAAFSSGDYEAAVRHFTEAISLSPD 34 (538)
Q Consensus 6 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~ 34 (538)
..+|..+...|++++|+..|-+|+...|+
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~q 49 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQ 49 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 34566666666666666666666666654
No 271
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=80.53 E-value=8.7 Score=29.72 Aligned_cols=60 Identities=10% Similarity=0.157 Sum_probs=40.0
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHhccCCcc---hHHH------HHHHHHHHhcCCHHHHHHHHHHHhc
Q 009278 5 AKAKGNAAFSSGDYEAAVRHFTEAISLSPDN---HVLY------SNRSAAHASLHNYADALADAKKTVE 64 (538)
Q Consensus 5 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~------~~la~~~~~~g~~~~A~~~~~~al~ 64 (538)
-+..|..+|..|+|=+|-+.++.+....+.. ...+ ...|..+.+.|+...|...+.+++.
T Consensus 35 ~~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 35 AVVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3567788888888888888888888776543 1222 2223344566777777777777765
No 272
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=80.06 E-value=0.00096 Score=61.32 Aligned_cols=242 Identities=15% Similarity=0.094 Sum_probs=143.4
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHHHHHH
Q 009278 250 ALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALT 329 (538)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (538)
+.+|..+|......+...+|++.|-++ .+|. .+.....+..+.|++++-+.++..+-+...+. ..-..+..+|.
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIkA--~Dps---~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~-~IDteLi~ayA 127 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPS---SYMEVVQAANTSGNWEELVKYLQMARKKARES-YVETELIFALA 127 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCCC--SCCC---SSSHHHHHTTTSSCCTTHHHHHHTTSTTCCST-TTTHHHHHHHH
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHhC--CChH---HHHHHHHHHHhCCCHHHHHHHHHHHHHHhccc-ccHHHHHHHHH
Confidence 345788899999999999998888665 2333 33344445556777777777777665543221 11112222332
Q ss_pred H---------------------hHHHHHHhhhcccChhHHHHHHHHHHhcCCChhHHHhhhhHHHHHHHHHHHHHcCCCc
Q 009278 330 R---------------------KGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKI 388 (538)
Q Consensus 330 ~---------------------~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 388 (538)
. .|.-++..+. |+.|.-.|..+-....-..++..++++..|.+... ..++
T Consensus 128 k~~rL~elEefl~~~N~A~iq~VGDrcf~e~l----YeAAKilys~isN~akLAstLV~L~~yq~AVdaAr-----KAns 198 (624)
T 3lvg_A 128 KTNRLAELEEFINGPNNAHIQQVGDRCYDEKM----YDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGAR-----KANS 198 (624)
T ss_dssp TSCSSSTTTSTTSCCSSSCTHHHHHHHHHSCC----STTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTT-----TCCS
T ss_pred hhCcHHHHHHHHcCCCcccHHHHHHHHHHccC----HHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHH-----hcCC
Confidence 2 2333333333 55555555444444444556666677666655442 3456
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCchHHHHHHHHHHH
Q 009278 389 ADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQF 468 (538)
Q Consensus 389 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 468 (538)
+..|......+...+.+.-|..+--..+- .|+. +-.+...|...|-+++-+..++.++.+..-+......||.+|.
T Consensus 199 ~ktWKeV~~ACvd~~EfrLAqicGLniIv-hade---L~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYs 274 (624)
T 3lvg_A 199 TRTWKEVCFACVDGKEFRLAQMCGLHIVV-HADE---LEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYS 274 (624)
T ss_dssp SCSHHHHTHHHHHSCTTTTTTHHHHHHHC-CSSC---CSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhCchHHHHHHHhcchhcc-cHHH---HHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHH
Confidence 66777777777788877777666555442 2322 2234455777888888888888888877777777788888776
Q ss_pred HccCHHHHHHHHHHHhc-cC-C------CCHHHHHHHHHHHHHhhhhccCC
Q 009278 469 FLKEYDKALETYQEGLK-HD-P------QNQELLDGVRRCVQQINKAGRGE 511 (538)
Q Consensus 469 ~~g~~~~A~~~~~~al~-~~-p------~~~~~~~~l~~~~~~~~~~~~a~ 511 (538)
+- +.++-.++++.-.. ++ | +....|..+.-+|..-.+++.|.
T Consensus 275 KY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 275 KF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp SS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred hc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 54 34444444443222 11 2 23455667777777777666553
No 273
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=77.81 E-value=2.7 Score=28.28 Aligned_cols=26 Identities=23% Similarity=0.312 Sum_probs=15.3
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHh
Q 009278 4 EAKAKGNAAFSSGDYEAAVRHFTEAI 29 (538)
Q Consensus 4 ~~~~~g~~~~~~g~~~~A~~~~~~al 29 (538)
.+..+|...-..|+|++|+.+|.+++
T Consensus 21 ~lv~~Ave~D~~g~y~eAl~lY~~ai 46 (83)
T 2w2u_A 21 KYAINAVKADKEGNAEEAITNYKKAI 46 (83)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 34555666666666666666665554
No 274
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=77.78 E-value=15 Score=27.46 Aligned_cols=57 Identities=16% Similarity=0.096 Sum_probs=48.0
Q ss_pred HHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc
Q 009278 258 NAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERG 314 (538)
Q Consensus 258 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 314 (538)
..+..+|.-++-.+.+...+.-.+-++..+..+|.+|.+.|+..+|.+.+.++.+..
T Consensus 99 d~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 99 DILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 345678888888888888777777789999999999999999999999999998754
No 275
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=76.68 E-value=78 Score=33.15 Aligned_cols=54 Identities=9% Similarity=0.033 Sum_probs=43.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHHHHHhhccCHHHHHHHHHhhh
Q 009278 40 SNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGL 97 (538)
Q Consensus 40 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al 97 (538)
..+...+...|.++-|.+ .+..-|.++..-+.+|.+++..|++++|..+|++|-
T Consensus 814 ~~l~~~L~~~~~~~~a~e----L~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA 867 (950)
T 4gq2_M 814 TELVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTS 867 (950)
T ss_dssp HHHHHHHHHTTCHHHHHH----HGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHHHHhcHHHHHHH----HHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 336667778888876543 566778888888999999999999999999999975
No 276
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=75.89 E-value=3.3 Score=27.92 Aligned_cols=25 Identities=24% Similarity=0.212 Sum_probs=13.5
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHh
Q 009278 5 AKAKGNAAFSSGDYEAAVRHFTEAI 29 (538)
Q Consensus 5 ~~~~g~~~~~~g~~~~A~~~~~~al 29 (538)
+..+|...-+.|+|++|+.+|.+++
T Consensus 14 lv~~Ave~D~~g~y~eAl~lY~~ai 38 (83)
T 2v6y_A 14 YAILAVKADKEGKVEDAITYYKKAI 38 (83)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHH
Confidence 4455555555555555555555444
No 277
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=75.10 E-value=82 Score=32.64 Aligned_cols=61 Identities=11% Similarity=0.051 Sum_probs=34.9
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 009278 252 KEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVE 312 (538)
Q Consensus 252 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 312 (538)
+-+.+|.++...|+-+-....+..+.+...+...-...+|..+...|+.+.+-...+....
T Consensus 492 AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~ 552 (963)
T 4ady_A 492 AALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITKMLA 552 (963)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHH
T ss_pred HHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHh
Confidence 4456777888888876666666665553333222233344444566777666666555443
No 278
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=73.57 E-value=4.1 Score=27.67 Aligned_cols=28 Identities=18% Similarity=0.201 Sum_probs=18.2
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHHHhc
Q 009278 3 DEAKAKGNAAFSSGDYEAAVRHFTEAIS 30 (538)
Q Consensus 3 ~~~~~~g~~~~~~g~~~~A~~~~~~al~ 30 (538)
-.+..+|...-..|+|++|+.+|..+++
T Consensus 17 ~~lv~~Ave~D~~g~y~eAl~lY~~Aie 44 (86)
T 4a5x_A 17 ATVLKRAVELDSESRYPQALVCYQEGID 44 (86)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3456666666777777777777666654
No 279
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=69.52 E-value=14 Score=34.49 Aligned_cols=61 Identities=5% Similarity=-0.020 Sum_probs=34.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCC--C--------CchhHhHHHHHHHHhCCchhHHHHHHHHHhc-CCC
Q 009278 395 KGNEFFKQQKYPEAIQHYTESLRRNP--K--------DPRTYSNRAACYTKLGAMPEGLKDADKCIEL-DPT 455 (538)
Q Consensus 395 la~~~~~~~~~~~A~~~~~~al~~~~--~--------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~p~ 455 (538)
+-.+|++.++..-+...++..-...+ . -....+.+|.++...++|.+|...+..|+.. .|.
T Consensus 182 L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~ 253 (455)
T 3t5v_B 182 LNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNL 253 (455)
T ss_dssp HHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCc
Confidence 44566677777666666644322211 1 0134556666666666666666666666665 444
No 280
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=68.83 E-value=7 Score=26.46 Aligned_cols=24 Identities=21% Similarity=0.458 Sum_probs=14.3
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHH
Q 009278 5 AKAKGNAAFSSGDYEAAVRHFTEA 28 (538)
Q Consensus 5 ~~~~g~~~~~~g~~~~A~~~~~~a 28 (538)
+-.++..+...|+|++||.+.+++
T Consensus 18 ~~RrAe~ll~~gkydeAIech~kA 41 (97)
T 2crb_A 18 QSRRADRLLAAGKYEEAISCHRKA 41 (97)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhHHHHHHhcCCHHHHHHHHHHH
Confidence 345566666666666666655544
No 281
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=67.60 E-value=6.5 Score=39.05 Aligned_cols=48 Identities=19% Similarity=0.301 Sum_probs=31.2
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHHHhccCCcchHHHHHHHHHHHhcC
Q 009278 3 DEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLH 50 (538)
Q Consensus 3 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 50 (538)
+....+|...+..|+|.-|.+..+.++..+|++..+...++.+|.++|
T Consensus 450 ~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~ 497 (658)
T 2cfu_A 450 ERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLG 497 (658)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 445566666666666666666666666666666666666666665555
No 282
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=67.16 E-value=38 Score=27.33 Aligned_cols=70 Identities=13% Similarity=0.032 Sum_probs=52.9
Q ss_pred CcchHHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CCCchHHHHHHHHHHhhccCHHHHHHHHHhhhhcCCCc
Q 009278 33 PDNHVLYSNRSAAHASLHNYADALADAKKTVEL--KPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNN 103 (538)
Q Consensus 33 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 103 (538)
|....+|...+..+ ..++..++...|.-+... .-..+..|...|..+...|++.+|..+|+.+++....-
T Consensus 77 ~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 77 PRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 33446677777665 234466788888777654 45677888999999999999999999999999876543
No 283
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=66.07 E-value=19 Score=29.30 Aligned_cols=38 Identities=21% Similarity=0.164 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCH
Q 009278 247 KEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDI 284 (538)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 284 (538)
...+...+.+|.+++..++|.+|...+..|+...|...
T Consensus 11 ~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~ 48 (203)
T 3t5x_A 11 AQRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSS 48 (203)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhH
Confidence 35667788888888888888888888888888887654
No 284
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=66.04 E-value=7.1 Score=26.38 Aligned_cols=25 Identities=16% Similarity=0.179 Sum_probs=12.0
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHh
Q 009278 5 AKAKGNAAFSSGDYEAAVRHFTEAI 29 (538)
Q Consensus 5 ~~~~g~~~~~~g~~~~A~~~~~~al 29 (538)
+..+|...-..|+|++|+.+|..++
T Consensus 16 l~~~Av~~D~~g~y~eAl~~Y~~ai 40 (85)
T 2v6x_A 16 LVQKAIDLDTATQYEEAYTAYYNGL 40 (85)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444444444555555555544443
No 285
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=65.64 E-value=7.3 Score=26.90 Aligned_cols=25 Identities=16% Similarity=0.238 Sum_probs=12.3
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHh
Q 009278 5 AKAKGNAAFSSGDYEAAVRHFTEAI 29 (538)
Q Consensus 5 ~~~~g~~~~~~g~~~~A~~~~~~al 29 (538)
++.+|...-..|+|++|+.+|..++
T Consensus 18 lv~~Ave~D~~g~y~eAl~~Y~~Ai 42 (93)
T 1wfd_A 18 VLKRAVELDAESRYQQALVCYQEGI 42 (93)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 4444455555555555555544443
No 286
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=64.58 E-value=7.2 Score=26.88 Aligned_cols=34 Identities=21% Similarity=0.300 Sum_probs=21.1
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHhccCCCCHHHH
Q 009278 461 TRKGAIQFFLKEYDKALETYQEGLKHDPQNQELL 494 (538)
Q Consensus 461 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 494 (538)
..+|..+...|+++.|+.+|-+|+...|+-..++
T Consensus 24 V~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP~~LL 57 (95)
T 1om2_A 24 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLL 57 (95)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 3456666666666666666666666666544443
No 287
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=63.85 E-value=79 Score=28.01 Aligned_cols=20 Identities=10% Similarity=-0.117 Sum_probs=13.7
Q ss_pred HHHHhcccHHHHHHHHHHHH
Q 009278 258 NAAYKKKEFEKAIEHYSSAL 277 (538)
Q Consensus 258 ~~~~~~~~~~~A~~~~~~al 277 (538)
..|...++...|...+....
T Consensus 195 L~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 195 LPYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHH
Confidence 34667888888887655544
No 288
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=63.71 E-value=7.2 Score=26.88 Aligned_cols=27 Identities=37% Similarity=0.647 Sum_probs=13.5
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHhccCC
Q 009278 7 AKGNAAFSSGDYEAAVRHFTEAISLSP 33 (538)
Q Consensus 7 ~~g~~~~~~g~~~~A~~~~~~al~~~p 33 (538)
.+|..++..|+++.|+..|-+|+...|
T Consensus 25 ~lGE~L~~~g~~e~av~Hf~nAl~Vc~ 51 (95)
T 1om2_A 25 QLGEELLAQGDYEKGVDHLTNAIAVCG 51 (95)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcC
Confidence 345555555555555555555544444
No 289
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=61.13 E-value=7.5 Score=25.66 Aligned_cols=25 Identities=12% Similarity=0.212 Sum_probs=18.3
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHhc
Q 009278 6 KAKGNAAFSSGDYEAAVRHFTEAIS 30 (538)
Q Consensus 6 ~~~g~~~~~~g~~~~A~~~~~~al~ 30 (538)
...|+.+...|+|+.|+.+|+.+++
T Consensus 16 ~k~ARe~Al~GnYdta~~yY~g~~~ 40 (78)
T 2rpa_A 16 VKLAREYALLGNYDSAMVYYQGVLD 40 (78)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHH
Confidence 4567777777777777777777765
No 290
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=60.81 E-value=18 Score=29.40 Aligned_cols=32 Identities=9% Similarity=-0.037 Sum_probs=16.2
Q ss_pred HHHHHHHHHhhccCHHHHHHHHHhhhhcCCCc
Q 009278 72 GYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNN 103 (538)
Q Consensus 72 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 103 (538)
..+.+|.+++..++|.+|...+..|+...|..
T Consensus 16 Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~ 47 (203)
T 3t5x_A 16 YKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRS 47 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHh
Confidence 34445555555555555555555555544433
No 291
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=59.37 E-value=9.2 Score=27.76 Aligned_cols=12 Identities=17% Similarity=0.185 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHh
Q 009278 18 YEAAVRHFTEAI 29 (538)
Q Consensus 18 ~~~A~~~~~~al 29 (538)
.+.|+.++.+|+
T Consensus 15 l~kAi~lv~~Av 26 (117)
T 2cpt_A 15 LQKAIDLASKAA 26 (117)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 445666666655
No 292
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=59.37 E-value=21 Score=24.62 Aligned_cols=29 Identities=7% Similarity=-0.025 Sum_probs=19.8
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHhccCCc
Q 009278 6 KAKGNAAFSSGDYEAAVRHFTEAISLSPD 34 (538)
Q Consensus 6 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~ 34 (538)
+..|..++..|+|=+|-+.++.+....|.
T Consensus 5 ~~~~~~lfn~g~~~eaHEvlE~~W~~~~~ 33 (94)
T 2cwy_A 5 WEEVLGLWRAGRYYEVHEVLEPYWLKATG 33 (94)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHhhCCC
Confidence 34666777777777777777777666643
No 293
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=56.97 E-value=59 Score=24.37 Aligned_cols=53 Identities=13% Similarity=0.045 Sum_probs=28.5
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCchhHhHHHHHHHHhCCchhHHHHHHHHHh
Q 009278 399 FFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIE 451 (538)
Q Consensus 399 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 451 (538)
+..+|+-++-.+.+...+...+-+|+.+..+|.+|.+.|+..+|.+.+.+|-+
T Consensus 101 lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~ 153 (172)
T 1wy6_A 101 LVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACK 153 (172)
T ss_dssp HHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 34455555555555554444444556666666666666666666666555544
No 294
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=56.39 E-value=25 Score=23.85 Aligned_cols=29 Identities=17% Similarity=0.182 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHH
Q 009278 249 KALKEKEAGNAAYKKKEFEKAIEHYSSAL 277 (538)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al 277 (538)
.+..+-..+..+...|.|++||++.+++.
T Consensus 14 ~AH~~~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 14 LAHQQSRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhhHhhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 45666777888888888888888777654
No 295
>2pmr_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.32A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.8.11.1
Probab=53.56 E-value=12 Score=25.39 Aligned_cols=24 Identities=13% Similarity=0.044 Sum_probs=11.8
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHH
Q 009278 2 ADEAKAKGNAAFSSGDYEAAVRHF 25 (538)
Q Consensus 2 a~~~~~~g~~~~~~g~~~~A~~~~ 25 (538)
|..|+.-|..++..|++..|+..+
T Consensus 39 A~~Y~~Da~~fl~kGD~v~Ala~i 62 (87)
T 2pmr_A 39 ALNYRDDSVYYLEKGDHITSFGCI 62 (87)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHH
Confidence 444455555555555555544443
No 296
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=53.34 E-value=42 Score=22.45 Aligned_cols=24 Identities=29% Similarity=0.224 Sum_probs=10.3
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHH
Q 009278 253 EKEAGNAAYKKKEFEKAIEHYSSA 276 (538)
Q Consensus 253 ~~~~~~~~~~~~~~~~A~~~~~~a 276 (538)
+...|...-..|++++|+.+|..+
T Consensus 22 lv~~Ave~D~~g~y~eAl~lY~~a 45 (83)
T 2w2u_A 22 YAINAVKADKEGNAEEAITNYKKA 45 (83)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHH
Confidence 333344444444444444444433
No 297
>2oo2_A Hypothetical protein AF_1782; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Archaeoglobus fulgidus dsm 4304} SCOP: a.8.11.1
Probab=52.98 E-value=12 Score=25.20 Aligned_cols=26 Identities=12% Similarity=0.079 Sum_probs=18.7
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHH
Q 009278 1 MADEAKAKGNAAFSSGDYEAAVRHFT 26 (538)
Q Consensus 1 ~a~~~~~~g~~~~~~g~~~~A~~~~~ 26 (538)
||..|+.-|..++..|++..|+..+.
T Consensus 34 mA~~Y~~Da~~fl~kGD~v~Ala~is 59 (86)
T 2oo2_A 34 NIEAYISDSRYFLEKGDLVRAFECVV 59 (86)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 46677777777777777777776654
No 298
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=51.88 E-value=95 Score=27.61 Aligned_cols=120 Identities=13% Similarity=0.064 Sum_probs=66.1
Q ss_pred CCchHHHHHHHHHHHhc--CChHHHHHHHHHHHhc-----CCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhc------
Q 009278 386 PKIADEEREKGNEFFKQ--QKYPEAIQHYTESLRR-----NPKDPRTYSNRAACYTKLGAMPEGLKDADKCIEL------ 452 (538)
Q Consensus 386 ~~~~~~~~~la~~~~~~--~~~~~A~~~~~~al~~-----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~------ 452 (538)
...|.++.++|++--.. .....++.+|.+++.. ...+.-.|..+|-.+++.+++.+|+..+-.+-..
T Consensus 252 ~rYPmALgnLgDLEe~~pt~gr~~~l~L~~~AI~sa~~yY~n~HvYPYtylgGy~yR~~~~reAl~~WA~Aa~Vi~~YNY 331 (472)
T 3re2_A 252 KTYPMAIANLGDLEEISPTPGRPPAEELFKEAITVAKREYSDHHIYPYTYLGGYYYRKKKYYEAIASWVDAGYVAGKYNY 331 (472)
T ss_dssp TTCHHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC
T ss_pred hhCchhhcchhhHHhcCCCCCCCCHHHHHHHHHHHHHHHhccCCccchhhhhhhhhhcchHHHHHHHHHHHHHHHHHcCC
Confidence 45677777777765432 2233377788877754 2234556677777888888888888887766543
Q ss_pred CCCchHHHHHHHHHHHHccCHHHHHHHHHHHhcc-CC---------CCHHHHHHHHHHHHHhhhhccC
Q 009278 453 DPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKH-DP---------QNQELLDGVRRCVQQINKAGRG 510 (538)
Q Consensus 453 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p---------~~~~~~~~l~~~~~~~~~~~~a 510 (538)
..++.+.|-.+-.+.... -=..++.+... +| ++++....|-+.|.-+-++++.
T Consensus 332 ~reDeEIYKEf~eIAnel-----iP~~~k~a~~~~~~~G~~~~siL~DpecfA~LLrFYDgIC~WEEG 394 (472)
T 3re2_A 332 SKDDEEMYKEFHEIANDL-----IPNILKDAVAKADPSGTGSTNLTSDPKFFALVLQFYDGICLWEEG 394 (472)
T ss_dssp CGGGHHHHHHHHHHHHTH-----HHHHHHHHHTCC--------CGGGCHHHHHHHHHHHHHHHHHHTT
T ss_pred CccHHHHHHHHHHHHHHH-----hhHHHHhhhhccCCCCcchhhhccChHHHHHHHHHhhcceecccC
Confidence 122333333322221110 01122323333 21 3577777777777777666654
No 299
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=50.83 E-value=26 Score=32.77 Aligned_cols=88 Identities=7% Similarity=-0.132 Sum_probs=61.2
Q ss_pred CCHHHHHHHHHHHhcc-----CCc-------chH----HHHHHHHHHHhcCCHHHHHHHHHHHhccC--------C--Cc
Q 009278 16 GDYEAAVRHFTEAISL-----SPD-------NHV----LYSNRSAAHASLHNYADALADAKKTVELK--------P--DW 69 (538)
Q Consensus 16 g~~~~A~~~~~~al~~-----~p~-------~~~----~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p--~~ 69 (538)
...+++...+.++... +|. .-. ....+-.+|+++|+..-|...+...-... | +.
T Consensus 140 ~~le~~a~~i~k~F~~cl~Dr~~~~~~s~p~kk~~~l~l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~ 219 (455)
T 3t5v_B 140 QFLSHISSILSRLFNSIKPPRGNASSTNIPGKQRILLYLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQ 219 (455)
T ss_dssp HHHHHHHHHHHHHHHHCCCC----CCSSCCHHHHHHHHHHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHH
T ss_pred hHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccce
Confidence 3456777777776654 111 111 22334578899999999988886543322 2 12
Q ss_pred hHHHHHHHHHHhhccCHHHHHHHHHhhhhc-CCCc
Q 009278 70 SKGYSRLGAAHLGLQDYIEAVNSYKKGLDI-DPNN 103 (538)
Q Consensus 70 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~p~~ 103 (538)
...++.+|++++..++|.+|...+..|+.. .|..
T Consensus 220 v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 220 IEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred EeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 457889999999999999999999999998 7765
No 300
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=48.64 E-value=21 Score=23.54 Aligned_cols=26 Identities=15% Similarity=0.164 Sum_probs=19.1
Q ss_pred hHHHHHHHHhCCchhHHHHHHHHHhc
Q 009278 427 SNRAACYTKLGAMPEGLKDADKCIEL 452 (538)
Q Consensus 427 ~~la~~~~~~~~~~~A~~~~~~al~~ 452 (538)
..+|+-|...|+|+.|+.+|+.+++.
T Consensus 16 ~k~ARe~Al~GnYdta~~yY~g~~~q 41 (78)
T 2rpa_A 16 VKLAREYALLGNYDSAMVYYQGVLDQ 41 (78)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 45677777788888888888777653
No 301
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=46.74 E-value=44 Score=33.19 Aligned_cols=55 Identities=11% Similarity=0.154 Sum_probs=43.4
Q ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhccCC
Q 009278 457 SKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDGVRRCVQQINKAGRGE 511 (538)
Q Consensus 457 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~ 511 (538)
.......|...+..|+|.-|.+....++..+|+|.++...++.++.++|...+..
T Consensus 449 ~~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~~~~~~ 503 (658)
T 2cfu_A 449 AERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGYQAENA 503 (658)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCSSH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhccCh
Confidence 4455667777778888888888888888888888888888888888888776654
No 302
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=46.14 E-value=1e+02 Score=23.83 Aligned_cols=64 Identities=9% Similarity=0.093 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC---HHHH------HHHHHHHHHhCCHHHHHHHHHHHHHc
Q 009278 250 ALKEKEAGNAAYKKKEFEKAIEHYSSALELDDED---ISYL------TNRAAVYLEMGKYEECIKDCDKAVER 313 (538)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~------~~la~~~~~~~~~~~A~~~~~~~~~~ 313 (538)
...-+..|..++..|+|-+|-+.++.+-...+.. ...+ ...|..+.+.|+..-|...+.+++..
T Consensus 32 ~~~~~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 32 LRRAVVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3344667888899999999999999999886554 2222 23344567789999999999999874
No 303
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=45.91 E-value=73 Score=22.19 Aligned_cols=84 Identities=19% Similarity=0.037 Sum_probs=48.3
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCchHHHHHHHHHHHHccCHHHHHH
Q 009278 399 FFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALE 478 (538)
Q Consensus 399 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 478 (538)
-.-....++|..+-+ .+...+...-+-......++..|+|++|....+.. + .|+.--.++.+-.+.|--.++..
T Consensus 16 gTG~H~HqEA~tIAd-wL~~~~~~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c-~pdlepw~ALce~rlGl~s~le~ 89 (115)
T 2uwj_G 16 GSGQHCHEEALCIAE-WLERLGQDEAARLIRISSLANQGRYQEALAFAHGN----P-WPALEPWFALCEWHLGLGAALDR 89 (115)
T ss_dssp HHTTTCHHHHHHHHH-HHHHTTCHHHHHHHHHHHHHHTTCHHHHHGGGTTC----C-CGGGHHHHHHHHHHTTCHHHHHH
T ss_pred HccchHHHHHHHHHH-HHHhCCcHHHHHHHHHHHHHcchhHHHHHHhcCCC----C-CchHHHHHHHHHHhcccHHHHHH
Confidence 334455666665544 33444442233334455677888888887665432 2 45555556777788888888777
Q ss_pred HH-HHHhccCC
Q 009278 479 TY-QEGLKHDP 488 (538)
Q Consensus 479 ~~-~~al~~~p 488 (538)
.+ +-+.+-+|
T Consensus 90 rL~~la~sg~p 100 (115)
T 2uwj_G 90 RLAGLGGSSDP 100 (115)
T ss_dssp HHHHHHTCSSH
T ss_pred HHHHHHhCCCH
Confidence 77 33333333
No 304
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=45.58 E-value=42 Score=22.42 Aligned_cols=15 Identities=40% Similarity=0.523 Sum_probs=6.1
Q ss_pred hCCHHHHHHHHHHHH
Q 009278 297 MGKYEECIKDCDKAV 311 (538)
Q Consensus 297 ~~~~~~A~~~~~~~~ 311 (538)
.|++++|+.+|..++
T Consensus 24 ~g~y~eAl~lY~~ai 38 (83)
T 2v6y_A 24 EGKVEDAITYYKKAI 38 (83)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHH
Confidence 344444444444333
No 305
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=45.10 E-value=76 Score=22.15 Aligned_cols=81 Identities=11% Similarity=-0.055 Sum_probs=49.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHhHHHHHHHHhCCchhHHHHHHHHHhcCCCchHHHHHHHHHHHHccCH
Q 009278 394 EKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEY 473 (538)
Q Consensus 394 ~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 473 (538)
.+|.+-.-....++|..+-+ .+...+...-+-......++..|+|++|....+.. + .|+.--.++.+-.+.|--
T Consensus 12 E~AL~gTG~H~HqEA~tIAd-wL~~~~~~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c-~pdlepw~ALce~rlGl~ 85 (116)
T 2p58_C 12 EIALIGTGNHYHEEANCIAE-WLHLKGEEEAVQLIRLSSLMNRGDYASALQQGNKL----A-YPDLEPWLALCEYRLGLG 85 (116)
T ss_dssp HHHHHHHTTTCHHHHHHHHH-HHHHTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTS----C-CGGGHHHHHHHHHHHTCH
T ss_pred HHHHHHccchHHHHHHHHHH-HHHhCCcHHHHHHHHHHHHHcchhHHHHHHhcCCC----C-CchHHHHHHHHHHhcccH
Confidence 34444444556677765554 34444443333344455677888998888776543 2 455555567777888888
Q ss_pred HHHHHHH
Q 009278 474 DKALETY 480 (538)
Q Consensus 474 ~~A~~~~ 480 (538)
.++...+
T Consensus 86 s~le~rL 92 (116)
T 2p58_C 86 SALESRL 92 (116)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8877777
No 306
>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP}
Probab=50.72 E-value=4.6 Score=40.06 Aligned_cols=49 Identities=24% Similarity=0.213 Sum_probs=29.2
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHHHhccCCcchHHHHHHHHHHHhcCC
Q 009278 3 DEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHN 51 (538)
Q Consensus 3 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 51 (538)
+....+|...+..|+|.-|.++.+.++..+|++..+...++.+|.++|.
T Consensus 462 ~~~~~~a~~~~~~g~~~wa~~l~~~~~~a~p~~~~ar~l~a~~~~~l~~ 510 (668)
T 2yhe_A 462 DAVLKQMRAAIDKGDYRWAVQLGNHLVFADPANKDARALQADAMEQLGY 510 (668)
Confidence 3445555666666666666666666666666666666666666555553
No 307
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=44.06 E-value=51 Score=22.21 Aligned_cols=26 Identities=8% Similarity=0.161 Sum_probs=13.1
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHH
Q 009278 252 KEKEAGNAAYKKKEFEKAIEHYSSAL 277 (538)
Q Consensus 252 ~~~~~~~~~~~~~~~~~A~~~~~~al 277 (538)
.+...|.-.-..|+|++|+.+|..++
T Consensus 18 ~lv~~Ave~D~~g~y~eAl~lY~~Ai 43 (86)
T 4a5x_A 18 TVLKRAVELDSESRYPQALVCYQEGI 43 (86)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33444444455555555555555443
No 308
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=38.52 E-value=1.1e+02 Score=27.26 Aligned_cols=57 Identities=18% Similarity=0.273 Sum_probs=32.9
Q ss_pred hhHHHhhhhHHH---------HHHHHHHHHHc-----CCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 009278 362 PDTLKKLNEAEK---------AKKELEQQEIF-----DPKIADEEREKGNEFFKQQKYPEAIQHYTESLRR 418 (538)
Q Consensus 362 ~~~~~~~~~~~~---------a~~~~~~~~~~-----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 418 (538)
+..+..++++++ ++..|.+++.. .......|..+|-.+++.+++.+|+..+-.+-..
T Consensus 255 PmALgnLgDLEe~~pt~gr~~~l~L~~~AI~sa~~yY~n~HvYPYtylgGy~yR~~~~reAl~~WA~Aa~V 325 (472)
T 3re2_A 255 PMAIANLGDLEEISPTPGRPPAEELFKEAITVAKREYSDHHIYPYTYLGGYYYRKKKYYEAIASWVDAGYV 325 (472)
T ss_dssp HHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred chhhcchhhHHhcCCCCCCCCHHHHHHHHHHHHHHHhccCCccchhhhhhhhhhcchHHHHHHHHHHHHHH
Confidence 334445555554 45566665542 2344555666666777777777777766665543
No 309
>2npu_A FKBP12-rapamycin complex-associated protein; four-helix bundle, transferase; NMR {Homo sapiens}
Probab=38.33 E-value=75 Score=23.29 Aligned_cols=77 Identities=9% Similarity=-0.025 Sum_probs=34.9
Q ss_pred HHHHHHHhCCchhHHHHHHHHHhcCCCchHHHHHHHHHHHHccCHHHHHHHHHHHhccCCC--CHHHHHHHHHHHHHhh
Q 009278 429 RAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQ--NQELLDGVRRCVQQIN 505 (538)
Q Consensus 429 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~~ 505 (538)
.+.+|+..++.+..+..++...+.-...|.+....+....--.+..+|.+++++....... -..+|..+..++.++.
T Consensus 46 ASrlyf~~~n~~~m~~~L~pLh~~l~~~PeT~~E~sF~~~fG~~L~~A~~~~~~y~~t~d~~~lnqAWd~Y~~Vf~rI~ 124 (126)
T 2npu_A 46 ASRLYFGERNVKGMFEVLEPLHAMMERGPQTLKETSFNQAYGRDLMEAQEWCRKYMKSGNVKDLTQAWDLYYHVFRRIS 124 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcccCHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHh
Confidence 3445556666666666665542221111222233333333334555666666665432211 1245555555555443
No 310
>3snx_A SUSD homolog, putative SUSD-like carbohydrate binding protein; alpha-alpha superhelix, structural genomics; HET: MSE; 1.88A {Bacteroides thetaiotaomicron}
Probab=37.68 E-value=2.2e+02 Score=26.61 Aligned_cols=33 Identities=9% Similarity=0.117 Sum_probs=28.4
Q ss_pred CCchHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 009278 386 PKIADEEREKGNEFFKQQKYPEAIQHYTESLRR 418 (538)
Q Consensus 386 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 418 (538)
++...++..+|.+|+..++|++|....++++..
T Consensus 188 ~tk~aA~aLlARvyL~~~~~~~A~~~a~~vi~~ 220 (460)
T 3snx_A 188 PNTDVVNGLMARAYLLTGQWGEAAKAAEAARKG 220 (460)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT
T ss_pred cCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 445577889999999999999999999999853
No 311
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=36.85 E-value=2.5e+02 Score=25.67 Aligned_cols=59 Identities=12% Similarity=0.059 Sum_probs=36.0
Q ss_pred HHHHHHHHHhc-----CCCchHHHHHHHHHHHHccCHHHHHHHHHHHhc------cCCCCHHHHHHHHHH
Q 009278 442 GLKDADKCIEL-----DPTFSKGYTRKGAIQFFLKEYDKALETYQEGLK------HDPQNQELLDGVRRC 500 (538)
Q Consensus 442 A~~~~~~al~~-----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~------~~p~~~~~~~~l~~~ 500 (538)
++..|.+++.. ...+..-|..+|-.+++.+++.+|+..+-.+-. ...+|.+++..+-.+
T Consensus 298 ~~~L~~~AI~sa~~~Y~n~HvYPYtYlgGy~yR~~~~reAl~~WA~Aa~Vi~~YNY~reDeEIYKEf~eI 367 (550)
T 3u84_A 298 PLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTATVIQDYNYCREDEEIYKEFFEV 367 (550)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCccceeecchhhhhcchHHHHHHHHHHHHHHHHHcCCCcchHHHHHHHHHH
Confidence 55555555543 234455667777788888888888888776643 234556665544433
No 312
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=36.79 E-value=67 Score=21.47 Aligned_cols=25 Identities=16% Similarity=0.185 Sum_probs=11.4
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHH
Q 009278 253 EKEAGNAAYKKKEFEKAIEHYSSAL 277 (538)
Q Consensus 253 ~~~~~~~~~~~~~~~~A~~~~~~al 277 (538)
+...|.-.-..|++++|+.+|..++
T Consensus 16 l~~~Av~~D~~g~y~eAl~~Y~~ai 40 (85)
T 2v6x_A 16 LVQKAIDLDTATQYEEAYTAYYNGL 40 (85)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3333444444455555555544443
No 313
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=35.81 E-value=1.8e+02 Score=23.71 Aligned_cols=41 Identities=7% Similarity=0.145 Sum_probs=28.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCchhHhHHHHHHHH
Q 009278 395 KGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTK 435 (538)
Q Consensus 395 la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 435 (538)
...++++.|.|++|.+.+++.+..+|.+......|..+-.+
T Consensus 120 AV~VCiek~~f~kA~eiLkr~~~~~~s~~kLr~kL~~II~~ 160 (235)
T 3bu8_A 120 AVIICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNIIRE 160 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHSTTCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHhcchHHHHHHHHHHhcCCCCchHHHHHHHHHHhc
Confidence 34567889999999999999888766554455555444433
No 314
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=35.07 E-value=3.4e+02 Score=26.81 Aligned_cols=22 Identities=23% Similarity=0.190 Sum_probs=13.8
Q ss_pred HHHHHHHhcccHHHHHHHHHHH
Q 009278 255 EAGNAAYKKKEFEKAIEHYSSA 276 (538)
Q Consensus 255 ~~~~~~~~~~~~~~A~~~~~~a 276 (538)
..|......|++++|+.+|.-+
T Consensus 448 ~aA~~ae~~G~~~dAi~LY~La 469 (661)
T 2qx5_A 448 QAARRADEDGRIYDSILLYQLA 469 (661)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHh
Confidence 3455666677777777666543
No 315
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=34.24 E-value=1.1e+02 Score=20.63 Aligned_cols=33 Identities=21% Similarity=0.390 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhC
Q 009278 248 EKALKEKEAGNAAYKKKEFEKAIEHYSSALELD 280 (538)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 280 (538)
..++....-|.-+++.++|.+|...|+++....
T Consensus 51 ~~~r~~i~eak~~y~~~ny~ea~~l~~k~~n~t 83 (106)
T 2vkj_A 51 KKARSLIAEGKDLFETANYGEALVFFEKALNLS 83 (106)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHhcchhHHHHHHHHHHccc
Confidence 566777777778888888888888888876543
No 316
>2ynq_A ESSB; membrane protein, secretion, type V, secretion system; 2.40A {Geobacillus thermodenitrificans}
Probab=31.41 E-value=1.8e+02 Score=22.36 Aligned_cols=84 Identities=11% Similarity=0.143 Sum_probs=58.1
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHhccCCc--chHHHHHHHHHHHhcCCHH-HHHHHHHHHhcc--CCCchHHHHHHHHH
Q 009278 5 AKAKGNAAFSSGDYEAAVRHFTEAISLSPD--NHVLYSNRSAAHASLHNYA-DALADAKKTVEL--KPDWSKGYSRLGAA 79 (538)
Q Consensus 5 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~-~A~~~~~~al~~--~p~~~~~~~~la~~ 79 (538)
-+..+...|-..+|.+.+..++.. +|. .....|.+|..|....++. +-.+.....+.+ +|+.... ++
T Consensus 11 a~i~a~~afl~~dYs~VI~~L~~~---~~~~Lp~~~kY~LA~SYI~~e~Ls~eQKenIln~itlkSde~yL~Y-----WI 82 (161)
T 2ynq_A 11 AYIQSTELFLQNKYSDVITTLEDY---APEDMPYVIQYELASSYVMTESLTEEQRQTVSNNITLKTDEQYMLY-----WI 82 (161)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHTTS---CGGGSCHHHHHHHHHHHHHTSSSCHHHHHHHHHTCCTTSCHHHHHH-----HH
T ss_pred HHHHHHHHHHHhhHHHHHHHHhcC---ChhhCChhHHHHHHHHHHHccCCCHHHHHHHHhhCCccCCHHHHHH-----HH
Confidence 456788899999999999988753 443 3578899999999887764 333444333333 3333334 45
Q ss_pred HhhccCHHHHHHHHHhh
Q 009278 80 HLGLQDYIEAVNSYKKG 96 (538)
Q Consensus 80 ~~~~~~~~~A~~~~~~a 96 (538)
|.-.|++++|+..-+..
T Consensus 83 yiGRg~~~eAlDiA~~L 99 (161)
T 2ynq_A 83 YIGRSQSEEALELARTI 99 (161)
T ss_dssp HHHHTCHHHHHHHHHHH
T ss_pred HHcCCchHHHHHHHHhc
Confidence 55689999999887664
No 317
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=31.37 E-value=3e+02 Score=25.01 Aligned_cols=97 Identities=9% Similarity=-0.003 Sum_probs=60.9
Q ss_pred HHHHHhcccHHHHHHHHHHHHhhC-----------------CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccccch-
Q 009278 257 GNAAYKKKEFEKAIEHYSSALELD-----------------DEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELR- 318 (538)
Q Consensus 257 ~~~~~~~~~~~~A~~~~~~al~~~-----------------p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~- 318 (538)
..+.....+.++|++++++..... .....+...++..|...|+.++|...++++-..-....
T Consensus 83 ~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~ 162 (393)
T 4b4t_O 83 LASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDS 162 (393)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCC
Confidence 344556788999999998764321 01134566788999999999999999998865321111
Q ss_pred hhHHHHHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHh
Q 009278 319 SDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALT 357 (538)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 357 (538)
......+..+...+..+...++ +..+....-..+.
T Consensus 163 ~~~~v~~~~y~~~~~~~~~~~~----~a~~y~~~l~~l~ 197 (393)
T 4b4t_O 163 IPLRITNSFYSTNSQYFKFKND----FNSFYYTSLLYLS 197 (393)
T ss_dssp SSSHHHHHHHHHHHHHHHHTTC----HHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHhhh----HHHHHHHHHHHHh
Confidence 1111225556666666666666 6666555555544
No 318
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=30.46 E-value=5.6e+02 Score=27.90 Aligned_cols=48 Identities=13% Similarity=-0.029 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 009278 249 KALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLE 296 (538)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 296 (538)
..+++..+-...+..-+.+++.++|+++++..|++..++..+...+..
T Consensus 1106 ~~e~~rd~~~~~~~k~~~~~~~~~~~~l~~~~P~~l~~~~~~l~~l~~ 1153 (1354)
T 3lxu_X 1106 YAESFRDFQCSQIVKCELEMAEKIYNDVVAAHPKHLQANLLLIQNIES 1153 (1354)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcChHHHHHHHHHHHHHCCccHHHHHHHHHhhhh
Confidence 344445544555555567889999999999999999888777665543
No 319
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=30.29 E-value=82 Score=22.76 Aligned_cols=9 Identities=56% Similarity=0.479 Sum_probs=3.9
Q ss_pred HHHHHHHHH
Q 009278 268 KAIEHYSSA 276 (538)
Q Consensus 268 ~A~~~~~~a 276 (538)
.|+.++.+|
T Consensus 17 kAi~lv~~A 25 (117)
T 2cpt_A 17 KAIDLASKA 25 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444444
No 320
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=30.00 E-value=2.8e+02 Score=24.24 Aligned_cols=64 Identities=11% Similarity=-0.015 Sum_probs=44.9
Q ss_pred CCchhHhHHHHHHHHhCCchhHHHHHHHHH----------------h---cCCCchHHHHHHHH-HHHHccCHHHHHHHH
Q 009278 421 KDPRTYSNRAACYTKLGAMPEGLKDADKCI----------------E---LDPTFSKGYTRKGA-IQFFLKEYDKALETY 480 (538)
Q Consensus 421 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al----------------~---~~p~~~~~~~~l~~-~~~~~g~~~~A~~~~ 480 (538)
.++..+..+|..|...|++.+|..+|-..- + -.|.....+...+. .|...|+...|...|
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~RaVL~yL~l~n~~~A~~~~ 211 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDSTVAEFFSRLVFNYLFISNISFAHESK 211 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 578899999999999999999998874210 1 12333444444443 456789999998888
Q ss_pred HHHh
Q 009278 481 QEGL 484 (538)
Q Consensus 481 ~~al 484 (538)
....
T Consensus 212 ~~f~ 215 (312)
T 2wpv_A 212 DIFL 215 (312)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 321
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=29.84 E-value=72 Score=25.50 Aligned_cols=43 Identities=7% Similarity=-0.025 Sum_probs=28.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCchhHhHHHHHHHHhC
Q 009278 395 KGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLG 437 (538)
Q Consensus 395 la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~ 437 (538)
...++++.|.+++|.+.+++....++.+......|..+-....
T Consensus 123 AV~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~II~~Kd 165 (211)
T 3bqo_A 123 AIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMIISQKD 165 (211)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHHHHTTC
T ss_pred HHHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHHHHccC
Confidence 4567889999999999999999888777666655555544333
No 322
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=28.26 E-value=60 Score=26.35 Aligned_cols=41 Identities=15% Similarity=-0.034 Sum_probs=24.2
Q ss_pred HHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHHHHHhhcc
Q 009278 44 AAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQ 84 (538)
Q Consensus 44 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 84 (538)
.++++.|.|++|.+.+++....+|.+......|..+-...+
T Consensus 122 ~VCiek~~f~kA~eiLkr~~~~~~s~~kLr~kL~~II~~Kd 162 (235)
T 3bu8_A 122 IICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNIIREKN 162 (235)
T ss_dssp HHHHHTTCHHHHHHHHHHHSTTCGGGHHHHHHHHHHHHHTC
T ss_pred HHHHHhcchHHHHHHHHHHhcCCCCchHHHHHHHHHHhccC
Confidence 44566677777777777766665555555555555444433
No 323
>2npu_A FKBP12-rapamycin complex-associated protein; four-helix bundle, transferase; NMR {Homo sapiens}
Probab=28.23 E-value=1.3e+02 Score=22.05 Aligned_cols=17 Identities=6% Similarity=0.104 Sum_probs=7.7
Q ss_pred HHhhcCCHHHHHHHHHH
Q 009278 11 AAFSSGDYEAAVRHFTE 27 (538)
Q Consensus 11 ~~~~~g~~~~A~~~~~~ 27 (538)
.++..+|.+..+..+..
T Consensus 49 lyf~~~n~~~m~~~L~p 65 (126)
T 2npu_A 49 LYFGERNVKGMFEVLEP 65 (126)
T ss_dssp HHHHTTCHHHHHHHHHH
T ss_pred HHhcccCHHHHHHHHHH
Confidence 33444455444444433
No 324
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=27.53 E-value=1.5e+02 Score=20.30 Aligned_cols=61 Identities=10% Similarity=0.063 Sum_probs=34.2
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHccccchhhHHHHHHHHHHhHHHHHHhhhcccChhHHHHHHHHHHh
Q 009278 290 RAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALT 357 (538)
Q Consensus 290 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 357 (538)
.|..++..|+|-+|-+.++.+-...|. +......+-+....|..+...++ . |...+.+++.
T Consensus 7 ~~~~lfn~g~~~eaHEvlE~~W~~~~~-~~~~~~qGLIq~Ava~~h~~~gn----~--a~~ll~~a~~ 67 (94)
T 2cwy_A 7 EVLGLWRAGRYYEVHEVLEPYWLKATG-EERRLLQGVILLAAALHQRRLGR----P--GLRNLRKAEA 67 (94)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHHHHHHTTC----C--CHHHHHHHHH
T ss_pred HHHHHHhCCChHHHHHHHHHHHhhCCC-chHHHHHHHHHHHHHHHHHHcCc----H--HHHHHHHHHH
Confidence 445556667777777777777766643 22222223444444444444444 5 7777777665
No 325
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=27.36 E-value=53 Score=26.24 Aligned_cols=50 Identities=10% Similarity=-0.096 Sum_probs=29.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhccCCCchHHHHHHHHHHhhccCHHHHHH
Q 009278 42 RSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVN 91 (538)
Q Consensus 42 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~ 91 (538)
.-.++++.|.+++|.+.+++....+|.+......|..+-...+.+..-+.
T Consensus 123 AV~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~II~~Kd~~H~~lq 172 (211)
T 3bqo_A 123 AIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMIISQKDTFHSFFQ 172 (211)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHHHHTTCTTCHHHH
T ss_pred HHHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHHHHccCCCcHHHH
Confidence 34567788888888888888877776666666666655555544443333
No 326
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=26.60 E-value=1.6e+02 Score=20.15 Aligned_cols=13 Identities=23% Similarity=0.626 Sum_probs=6.9
Q ss_pred hhHHHHHHHHHHh
Q 009278 345 YEPAIETFQKALT 357 (538)
Q Consensus 345 ~~~A~~~~~~~~~ 357 (538)
+++|+.+|..+++
T Consensus 31 y~eAl~~Y~~Aie 43 (93)
T 1wfd_A 31 YQQALVCYQEGID 43 (93)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555444
No 327
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=24.61 E-value=4.1e+02 Score=24.34 Aligned_cols=25 Identities=16% Similarity=0.097 Sum_probs=12.0
Q ss_pred hHhHHHHHHHHhCCchhHHHHHHHH
Q 009278 425 TYSNRAACYTKLGAMPEGLKDADKC 449 (538)
Q Consensus 425 ~~~~la~~~~~~~~~~~A~~~~~~a 449 (538)
.|..+|-.+.+.+++.+|+..+..+
T Consensus 305 PYtYlgG~~~R~~~~~eAl~~wa~a 329 (489)
T 4gq4_A 305 PYMYLAGYHCRNRNVREALQAWADT 329 (489)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ceeecchHHHHhhhHHHHHHHhhhh
Confidence 3444444444555555555554444
No 328
>1wcr_A PTS system, N, N'-diacetylchitobiose-specific IIA component; mutagenesis, transferase, sugar transport, phosphotransferase; NMR {Escherichia coli} PDB: 2wy2_A 2wwv_A
Probab=23.84 E-value=97 Score=21.75 Aligned_cols=25 Identities=16% Similarity=0.174 Sum_probs=15.0
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHH
Q 009278 4 EAKAKGNAAFSSGDYEAAVRHFTEA 28 (538)
Q Consensus 4 ~~~~~g~~~~~~g~~~~A~~~~~~a 28 (538)
.+.-.|....+.|+|++|...++++
T Consensus 20 s~~~eAl~~Ak~g~fe~A~~~l~eA 44 (103)
T 1wcr_A 20 SLAYAALKQAKQGDFAAAKAMMDQS 44 (103)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 4445555666666666666666555
No 329
>1wcr_A PTS system, N, N'-diacetylchitobiose-specific IIA component; mutagenesis, transferase, sugar transport, phosphotransferase; NMR {Escherichia coli} PDB: 2wy2_A 2wwv_A
Probab=22.89 E-value=2e+02 Score=20.15 Aligned_cols=35 Identities=14% Similarity=-0.017 Sum_probs=24.0
Q ss_pred HHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Q 009278 243 AKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSAL 277 (538)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 277 (538)
+......++....-+.-..+.|+|++|...++++-
T Consensus 11 iI~~aG~Ars~~~eAl~~Ak~g~fe~A~~~l~eA~ 45 (103)
T 1wcr_A 11 LIINSGQARSLAYAALKQAKQGDFAAAKAMMDQSR 45 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 34445666667777777777777777777777663
No 330
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=22.55 E-value=1.3e+02 Score=28.21 Aligned_cols=32 Identities=13% Similarity=-0.065 Sum_probs=27.0
Q ss_pred CchHHHHHHHHHHhhccCHHHHHHHHHhhhhc
Q 009278 68 DWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDI 99 (538)
Q Consensus 68 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 99 (538)
+...++..+|++|+..|+|++|....++++..
T Consensus 188 tk~aa~allarvyL~~~~~~~A~~~a~~vi~~ 219 (454)
T 3myv_A 188 NKYAARALLARIYLYHDDNRKAFDLADQLIKD 219 (454)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcccHHHHHHHHHHHHhC
Confidence 34567888999999999999999999998853
No 331
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=22.31 E-value=3.1e+02 Score=22.10 Aligned_cols=71 Identities=6% Similarity=-0.101 Sum_probs=54.2
Q ss_pred HhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcccc
Q 009278 245 ERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALEL--DDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRE 316 (538)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 316 (538)
.++.....|...+..+ ..++..++..+|.-+... ....+..|...|..+...|++.+|..+|+..++..-.
T Consensus 75 ND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~ 147 (202)
T 3esl_A 75 NDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCR 147 (202)
T ss_dssp TCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred CCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence 3456667777777665 234466788888777654 5567888899999999999999999999999996543
No 332
>2yin_A DOCK2, dedicator of cytokinesis protein 2; apoptosis, DOCK, DOCK guanine nucleotide exchange factors; 2.70A {Homo sapiens} PDB: 3b13_A
Probab=22.09 E-value=4.7e+02 Score=24.17 Aligned_cols=91 Identities=12% Similarity=0.074 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhC---CC-----------CH---------HHHHHHHHHHHHhCCHHHHH
Q 009278 248 EKALKEKEAGNAAYKKKEFEKAIEHYSSALELD---DE-----------DI---------SYLTNRAAVYLEMGKYEECI 304 (538)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~---p~-----------~~---------~~~~~la~~~~~~~~~~~A~ 304 (538)
-.......++..+...++|.+|--++.....+. +. .+ ..+...+..+.+-+.|+.|+
T Consensus 33 l~i~~l~~L~~~h~~~~ny~EAa~~l~lhA~l~~w~~~~~~~~~~~~~~~~~qt~~~~ke~L~~~~i~~f~kg~~~E~ai 112 (436)
T 2yin_A 33 MYIRYLYKLRDLHLDCDNYTEAAYTLLLHTWLLKWSDEQCASQVMQTGQQHPQTHRQLKETLYETIIGYFDKGKMWEEAI 112 (436)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSCCC--------------CHHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHhCCCccccCcccccCCCCccccHHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 456677889999999999999988884433221 10 00 12333344555667899999
Q ss_pred HHHHHHHHccccchhhHHHHHHHHHHhHHHHHHh
Q 009278 305 KDCDKAVERGRELRSDFKMIARALTRKGTALVKM 338 (538)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (538)
.+++.++.........+..++.++..++.+|...
T Consensus 113 ~l~k~L~~~yE~~~~Dy~~Ls~~~~~~a~~y~~I 146 (436)
T 2yin_A 113 SLCKELAEQYEMEIFDYELLSQNLIQQAKFYESI 146 (436)
T ss_dssp HHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998776655456666777777777766544
No 333
>3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron}
Probab=21.75 E-value=1.6e+02 Score=27.78 Aligned_cols=31 Identities=13% Similarity=0.174 Sum_probs=26.4
Q ss_pred chHHHHHHHHHHhhccCHHHHHHHHHhhhhc
Q 009278 69 WSKGYSRLGAAHLGLQDYIEAVNSYKKGLDI 99 (538)
Q Consensus 69 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 99 (538)
...++..+|++|+..|+|++|....++++..
T Consensus 201 k~aa~allarvyL~~~~~~~A~~~a~~vi~~ 231 (477)
T 3mcx_A 201 YWAAQALLSRVYLNMGEYQKAYDAATDVIKN 231 (477)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhC
Confidence 3467888999999999999999999998864
No 334
>3l8r_A PTCA, putative PTS system, cellobiose-specific IIA component; helix; 2.50A {Streptococcus mutans} SCOP: a.7.2.0
Probab=21.29 E-value=2.2e+02 Score=20.63 Aligned_cols=35 Identities=17% Similarity=0.069 Sum_probs=22.9
Q ss_pred HHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Q 009278 242 EAKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSA 276 (538)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 276 (538)
.+......++....-|.-..+.|+|++|...++++
T Consensus 29 ~II~~aG~ARS~~~eAl~~Ak~gdfe~A~~~l~eA 63 (120)
T 3l8r_A 29 EIILNSGNARSIVHEAFDAMREKNYILAEQKLQEA 63 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34455556666666666667777777777776665
No 335
>4fm3_A Uncharacterized hypothetical protein; PF14346 family protein, DUF4398, structural genomics, joint for structural genomics, JCSG; HET: PG4; 2.47A {Pseudomonas aeruginosa}
Probab=20.65 E-value=1.9e+02 Score=20.03 Aligned_cols=28 Identities=21% Similarity=0.194 Sum_probs=18.3
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHHHh
Q 009278 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAI 29 (538)
Q Consensus 2 a~~~~~~g~~~~~~g~~~~A~~~~~~al 29 (538)
|+..+..+...+..++|..|..+.+++.
T Consensus 34 A~dKl~~A~~Am~~~~y~~Ar~lAEqAe 61 (98)
T 4fm3_A 34 AQDKYAAAQIAMTAESYKKARLLAEQAE 61 (98)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 3455666677777777777777766653
No 336
>3l8r_A PTCA, putative PTS system, cellobiose-specific IIA component; helix; 2.50A {Streptococcus mutans} SCOP: a.7.2.0
Probab=20.57 E-value=1.2e+02 Score=21.99 Aligned_cols=25 Identities=20% Similarity=0.199 Sum_probs=14.0
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHH
Q 009278 4 EAKAKGNAAFSSGDYEAAVRHFTEA 28 (538)
Q Consensus 4 ~~~~~g~~~~~~g~~~~A~~~~~~a 28 (538)
.+.-.|....+.|+|++|...++++
T Consensus 39 S~~~eAl~~Ak~gdfe~A~~~l~eA 63 (120)
T 3l8r_A 39 SIVHEAFDAMREKNYILAEQKLQEA 63 (120)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444555555666666666665554
No 337
>3snx_A SUSD homolog, putative SUSD-like carbohydrate binding protein; alpha-alpha superhelix, structural genomics; HET: MSE; 1.88A {Bacteroides thetaiotaomicron}
Probab=20.45 E-value=89 Score=29.31 Aligned_cols=33 Identities=15% Similarity=0.005 Sum_probs=26.4
Q ss_pred CCchHHHHHHHHHHhhccCHHHHHHHHHhhhhc
Q 009278 67 PDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDI 99 (538)
Q Consensus 67 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 99 (538)
++...++..+|++|+..+++++|....++++..
T Consensus 188 ~tk~aA~aLlARvyL~~~~~~~A~~~a~~vi~~ 220 (460)
T 3snx_A 188 PNTDVVNGLMARAYLLTGQWGEAAKAAEAARKG 220 (460)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT
T ss_pred cCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 344567888888888888899888888888864
Done!