RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 009282
(538 letters)
>3dc8_A Dihydropyrimidinase; TIM-barrel, hydrolase; HET: KCX; 1.85A
{Sinorhizobium meliloti}
Length = 490
Score = 653 bits (1686), Expect = 0.0
Identities = 221/469 (47%), Positives = 304/469 (64%), Gaps = 4/469 (0%)
Query: 54 KILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTH 113
+IKGGT+V A ADV VE G +V + PN+ + LDATG +VMPGGIDPHTH
Sbjct: 2 STVIKGGTIVTADLTYKADVKVEGGRIVEIGPNL---SGAETLDATGCYVMPGGIDPHTH 58
Query: 114 LAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKNSCMDYG 172
L M FMG+ + DDF SG AALAGGTTM +DF +P G SL ++ K+ + DY
Sbjct: 59 LEMPFMGTYSSDDFESGTRAALAGGTTMVVDFALPSPGQSLLEALTMWDNKSTRANCDYS 118
Query: 173 FHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAM 232
FHMAIT W E V +EME +VK+KGIN+FK FMAYKG+ M++D+ + F+RC +LGAL +
Sbjct: 119 FHMAITWWGEQVFNEMETIVKDKGINTFKHFMAYKGALMVDDDEMFSSFQRCAALGALPL 178
Query: 233 VHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVM 292
VHAENGD V + Q +++ G +GPE HA SRP +EGEA RAI +A+ P+Y+VH
Sbjct: 179 VHAENGDVVAQLQAKLLAEGNSGPEAHAYSRPAEVEGEAANRAIMIADMAGCPVYIVHTS 238
Query: 293 SMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKAL 352
A E I +AR G RV GEP++ L LD++ + D+ AA+ VMSPP R H +L
Sbjct: 239 CEQAHEAIRRARAKGMRVFGEPLIQHLTLDETEYFDKDWDHAARRVMSPPFRNKLHQDSL 298
Query: 353 QAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISV 412
A LA+G LQ+V TDHCAF + QK FG+ DF +IPNG G+E+RM ++W V +G+I++
Sbjct: 299 WAGLASGSLQVVATDHCAFTTEQKRFGVGDFTRIPNGTGGLEDRMPMLWTYGVATGRITM 358
Query: 413 TDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGR 472
++V +TST A+I N+YP+KGAILVG+DAD+++++P S I+A++ S +D NV+EG+
Sbjct: 359 NEFVAVTSTNIAKILNIYPKKGAILVGADADLVVWDPKRSKTISAKTQQSAIDYNVFEGK 418
Query: 473 RVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMRPFNYLFHGLDKADA 521
V G T+ G V E + G G+++ PF + L
Sbjct: 419 TVTGLPRFTLTRGVVSIEEGTVKTQEGHGEFVRRDPFPAVSTALSTWKE 467
>1gkp_A Hydantoinase; hydrolase, dihydropyrimidinase, cyclic amidase; HET:
KCX EPE; 1.29A {Thermus SP} SCOP: b.92.1.3 c.1.9.6 PDB:
1gkq_A*
Length = 458
Score = 639 bits (1652), Expect = 0.0
Identities = 162/459 (35%), Positives = 253/459 (55%), Gaps = 4/459 (0%)
Query: 55 ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHL 114
+LIK G ++ A + AD+Y E + + N+ +V+DATGK+V PG IDPH H+
Sbjct: 2 LLIKNGEIITADSRYKADIYAEGETITRIGQNLEAPPGTEVIDATGKYVFPGFIDPHVHI 61
Query: 115 AMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAK-NSCMDYG 172
+ FM + D +G AAL GGTT +I+ P G++ ++ KA+ NS DY
Sbjct: 62 YLPFMATFAKDTHETGSKAALMGGTTTYIEMCCPSRNDDALEGYQLWKSKAEGNSYCDYT 121
Query: 173 FHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAM 232
FHMA++K+DE ++ +V + GI+SFK F++YK F ++D + + + K LG +
Sbjct: 122 FHMAVSKFDEKTEGQLREIVAD-GISSFKIFLSYKNFFGVDDGEMYQTLRLAKELGVIVT 180
Query: 233 VHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVM 292
H EN + V Q++++ G TGPE H SRP +E E T R E YVVH+
Sbjct: 181 AHCENAELVGRLQQKLLSEGKTGPEWHEPSRPEAVEAEGTARFATFLETTGATGYVVHLS 240
Query: 293 SMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKAL 352
A++ A+ G + E V+ +LD ++ V A KY+MSPP+R + K L
Sbjct: 241 CKPALDAAMAAKARGVPIYIESVIPHFLLDKTY-AERGGVEAMKYIMSPPLRDKRNQKVL 299
Query: 353 QAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISV 412
ALA G + VGTDHC F++ QK G + F IPNG+ IE+R++L++ V G++ +
Sbjct: 300 WDALAQGFIDTVGTDHCPFDTEQKLLGKEAFTAIPNGIPAIEDRVNLLYTYGVSRGRLDI 359
Query: 413 TDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGR 472
+V ST+ A++F ++PRKG I VGSDAD+++++P I+ ++ H D N +EG
Sbjct: 360 HRFVDAASTKAAKLFGLFPRKGTIAVGSDADLVVYDPQYRGTISVKTQHVNNDYNGFEGF 419
Query: 473 RVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMRPFNY 511
+ G+ V G+V + + G GK + P +
Sbjct: 420 EIDGRPSVVTVRGKVAVRDGQFVGEKGWGKLLRREPMYF 458
>2ftw_A Dihydropyrimidine amidohydrolase; (beta-alpha)8-barrel,
beta-sandwich; HET: KCX; 2.05A {Dictyostelium
discoideum} SCOP: b.92.1.3 c.1.9.6
Length = 521
Score = 641 bits (1656), Expect = 0.0
Identities = 251/486 (51%), Positives = 330/486 (67%), Gaps = 4/486 (0%)
Query: 51 SSSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDP 110
+ ILIK GTVVN +DV VE+GI+ + NI + +KV+DAT K ++PGGID
Sbjct: 6 QTGTILIKNGTVVNDDRYFKSDVLVENGIIKEISKNIEPKEGIKVVDATDKLLLPGGIDT 65
Query: 111 HTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAK-NSC 168
HTH + FMG+ ++DDF G AA+AGGTT IDFVIP G SL ++ ++K A
Sbjct: 66 HTHFQLPFMGTVSVDDFDIGTQAAVAGGTTFIIDFVIPTRGQSLLEAYDQWKKWADEKVN 125
Query: 169 MDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLG 228
DY H+AIT W E VS EME++VKE+G+NSFK FMAYK SFM+ D+ + FKRCK LG
Sbjct: 126 CDYSLHVAITWWSEQVSREMEILVKERGVNSFKCFMAYKNSFMVTDQEMYHIFKRCKELG 185
Query: 229 ALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYV 288
A+A VHAENGD VFEGQK+M+E+GITGPEGH LSRP LE EAT RAI +A+ V TP+Y+
Sbjct: 186 AIAQVHAENGDMVFEGQKKMLEMGITGPEGHELSRPEALEAEATNRAIVIADSVCTPVYI 245
Query: 289 VHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGH 348
VHV S+ A + I K RK G RV GEP+ +GL +D S +W+ D+ AA +VM PPIR
Sbjct: 246 VHVQSIGAADVICKHRKEGVRVYGEPIAAGLGVDGSHMWNHDWRHAAAFVMGPPIRPDPR 305
Query: 349 NK-ALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVES 407
K L LA G L VGTD+C F + QKA G DDF KIPNGVNG+E+RM +VW+ V +
Sbjct: 306 TKGVLMDYLARGDLDCVGTDNCTFCADQKAMGKDDFTKIPNGVNGVEDRMSIVWENGVNT 365
Query: 408 GQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTN 467
G+++ +VR TS+E ARIFN+YPRKG I VG D DI+I++PN S I+ +HH +D N
Sbjct: 366 GKLTWCQFVRATSSERARIFNIYPRKGRIDVGCDGDIVIWDPNQSKTISKDTHHHAVDFN 425
Query: 468 VYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMRPFNYLFHGLDKADAKYLSSL 527
++EG +V G TI G +VW +++L+ V GSG+++ PF +F G+++ D K + L
Sbjct: 426 IFEGIKVTGIAVTTIVAGNIVWSDNKLSCVKGSGRFVPRPPFGPVFDGIEQRD-KVRNEL 484
Query: 528 QAPVKR 533
V R
Sbjct: 485 LRKVDR 490
>2vm8_A Dihydropyrimidinase-related protein 2; neurogenesis,
phosphoprotein, differentiation, CRMP, cytoplasm, TIM
barrel, polymorphism, axonal pathfinding; 1.9A {Homo
sapiens} PDB: 2gse_A 1kcx_A
Length = 501
Score = 639 bits (1650), Expect = 0.0
Identities = 210/474 (44%), Positives = 302/474 (63%), Gaps = 4/474 (0%)
Query: 51 SSSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDP 110
+S ++LIKGG +VN AD+Y+EDG++ + N+ V VK ++A + V+PGGID
Sbjct: 24 TSDRLLIKGGKIVNDDQSFYADIYMEDGLIKQIGENLIVPGGVKTIEAHSRMVIPGGIDV 83
Query: 111 HTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAK-NSC 168
HT M G + DDFF G AALAGGTTM ID V+P G SL A F+ + + A SC
Sbjct: 84 HTRFQMPDQGMTSADDFFQGTKAALAGGTTMIIDHVVPEPGTSLLAAFDQWREWADSKSC 143
Query: 169 MDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLG 228
DY H+ I++W + + +EME +VK+ G+NSF +MA+K F + D + E + +G
Sbjct: 144 CDYSLHVDISEWHKGIQEEMEALVKDHGVNSFLVYMAFKDRFQLTDCQIYEVLSVIRDIG 203
Query: 229 ALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYV 288
A+A VHAENGD + E Q+R+++LGITGPEGH LSRP +E EA RAI +A N PLY+
Sbjct: 204 AIAQVHAENGDIIAEEQQRILDLGITGPEGHVLSRPEEVEAEAVNRAITIANQTNCPLYI 263
Query: 289 VHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGH 348
VMS + E IA+ARK G V GEP+ + L D S W ++ AA +V SPP+
Sbjct: 264 TKVMSKSSAEVIAQARKKGTVVYGEPITASLGTDGSHYWSKNWAKAAAFVTSPPLSPDPT 323
Query: 349 N-KALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVES 407
L + L+ G LQ+ G+ HC FN+ QKA G D+F IP G NG EERM ++WD V +
Sbjct: 324 TPDFLNSLLSCGDLQVTGSAHCTFNTAQKAVGKDNFTLIPEGTNGTEERMSVIWDKAVVT 383
Query: 408 GQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTN 467
G++ +V +TST A++FN+YPRKG I VGSDAD++I++P+S I+A++H+S L+ N
Sbjct: 384 GKMDENQFVAVTSTNAAKVFNLYPRKGRIAVGSDADLVIWDPDSVKTISAKTHNSSLEYN 443
Query: 468 VYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMRPF-NYLFHGLDKAD 520
++EG +G V I+ G++V E+ L+V GSG+YI +PF ++++ +
Sbjct: 444 IFEGMECRGSPLVVISQGKIVLEDGTLHVTEGSGRYIPRKPFPDFVYKRIKARS 497
>2vr2_A Dihydropyrimidinase; hydantoinase, metal-binding, disease mutation,
dihydropyrimi amidohydrolase, nucleotide metabolism,
DPYS, dhpase, hydrolase; 2.80A {Homo sapiens}
Length = 541
Score = 640 bits (1654), Expect = 0.0
Identities = 239/513 (46%), Positives = 326/513 (63%), Gaps = 14/513 (2%)
Query: 32 NNLFCDAGSEYGGPQCGIQSSSK---ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNIN 88
++ +G + G QS + +LI+GG VVN ++ADV VEDG+V A+ ++
Sbjct: 3 HHHHHSSGVDLGTENLYFQSMAAPSRLLIRGGRVVNDDFSEVADVLVEDGVVRALGHDLL 62
Query: 89 ----VGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHID 144
++VLDA GK V+PGGID HTH+ FMGS +IDDF G AAL+GGTTM ID
Sbjct: 63 PPGGAPAGLRVLDAAGKLVLPGGIDTHTHMQFPFMGSRSIDDFHQGTKAALSGGTTMIID 122
Query: 145 FVIPING-SLTAGFEAYEKKAK-NSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKF 202
F IP G SL FE + A C DY H+A+T W + V +EM+++V++KG+NSFK
Sbjct: 123 FAIPQKGGSLIEAFETWRSWADPKVCCDYSLHVAVTWWSDQVKEEMKILVQDKGVNSFKM 182
Query: 203 FMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALS 262
FMAYK +M+ D L E F RCK +GA+A VHAENGD + EG K+M+ LGITGPEGH L
Sbjct: 183 FMAYKDLYMVTDLELYEAFSRCKEIGAIAQVHAENGDLIAEGAKKMLALGITGPEGHELC 242
Query: 263 RPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLD 322
RP +E EAT RAI +A VN PLY+VHVMS A + IA AR+ G+ V GEP+ + L D
Sbjct: 243 RPEAVEAEATLRAITIASAVNCPLYIVHVMSKSAAKVIADARRDGKVVYGEPIAASLGTD 302
Query: 323 DSWLWHSDFVTAAKYVMSPPIRAS-GHNKALQAALATGILQLVGTDHCAFNSTQKAFGID 381
+ W+ ++ AA +VM PP+R L LA L GTD+C FN+ QKA G D
Sbjct: 303 GTHYWNKEWHHAAHHVMGPPLRPDPSTPDFLMNLLANDDLTTTGTDNCTFNTCQKALGKD 362
Query: 382 DFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSD 441
DF KIPNGVNG+E+RM ++W+ V SG++ +V +TST A+IFN+YPRKG I VGSD
Sbjct: 363 DFTKIPNGVNGVEDRMSVIWEKGVHSGKMDENRFVAVTSTNAAKIFNLYPRKGRIAVGSD 422
Query: 442 ADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSG 501
ADI+I++P + I+A++HH ++ N++EG G VTI+ G+VV+E +V G G
Sbjct: 423 ADIVIWDPKGTRTISAKTHHQAVNFNIFEGMVCHGVPLVTISRGKVVYEAGVFSVTAGDG 482
Query: 502 KYIEMRPF-NYLFHGLDKADAKYLSSLQAPVKR 533
K+I +PF Y++ + + D + PV+R
Sbjct: 483 KFIPRKPFAEYIYKRIKQRDR---TCTPTPVER 512
>3sfw_A Dihydropyrimidinase; hydrolase, zinc binding; HET: KCX; 1.73A
{Brevibacillus agri} PDB: 1yny_A 1k1d_A*
Length = 461
Score = 637 bits (1645), Expect = 0.0
Identities = 203/460 (44%), Positives = 278/460 (60%), Gaps = 5/460 (1%)
Query: 54 KILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTH 113
K I+ GTVV A ADV ++ VVA+ ++ D +V+DATG +++PGGIDPHTH
Sbjct: 2 KKWIRNGTVVTASDTYQADVLIDGEKVVAIGSDLQATDA-EVIDATGYYLLPGGIDPHTH 60
Query: 114 LAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAK-NSCMDY 171
L M F G+ T D+FF+G AA GGTT +DF + G SL + + +KA+ + +DY
Sbjct: 61 LDMPFGGTVTSDNFFTGTKAAAFGGTTSIVDFCLTSKGESLHSAIATWHEKARGKAVIDY 120
Query: 172 GFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALA 231
GFH+ ++ ++ V +E+E +V +GI S K FMAYK M +DE L + R K LGAL
Sbjct: 121 GFHLMVSDANDHVLEELESVVNNEGITSLKVFMAYKNVLMADDETLFKTLIRAKELGALV 180
Query: 232 MVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHV 291
VHAENGD + K+ + G T P HA +RPP EGEAT RAI L + LYVVHV
Sbjct: 181 QVHAENGDVLDYLTKQALAEGNTDPIYHAYTRPPEAEGEATGRAIALTALADAQLYVVHV 240
Query: 292 MSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKA 351
DA+ IA+AR+ G V GE LVLD + L DF AKYV SPP+R +
Sbjct: 241 SCADAVRRIAEAREKGWNVYGETCPQYLVLDITALEKPDFE-GAKYVWSPPLREKWNQDV 299
Query: 352 LQAALATGILQLVGTDHCAFN-STQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQI 410
L +AL GILQ VG+DHC FN S QK G DF KIPNG IE+RM +++ V G+I
Sbjct: 300 LWSALKNGILQTVGSDHCPFNFSGQKELGRRDFTKIPNGGPIIEDRMTILFSEGVRKGKI 359
Query: 411 SVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYE 470
S+ +V +TST+ A++F ++P+KG I VGSDADI++F+P I+ +HH +D N +E
Sbjct: 360 SLNQFVDITSTKVAKLFGMFPQKGTIAVGSDADIVLFDPTVQRTISVETHHMNVDYNPFE 419
Query: 471 GRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMRPFN 510
G +V G V ++ G V N + G+G+Y++ F
Sbjct: 420 GMQVHGDVISVLSRGAFVVRNKQFVGHAGAGRYVKRSTFA 459
>1nfg_A D-hydantoinase; TIM barrel, hydrolase; HET: KCX; 2.70A {Ralstonia
pickettii} SCOP: b.92.1.3 c.1.9.6
Length = 457
Score = 623 bits (1610), Expect = 0.0
Identities = 175/459 (38%), Positives = 265/459 (57%), Gaps = 8/459 (1%)
Query: 54 KILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTH 113
I+IK GT+V A AD+ ++DG + + + + + +DA G++V PGGID HTH
Sbjct: 2 DIIIKNGTIVTADGISRADLGIKDGKITQIGGALGPAE--RTIDAAGRYVFPGGIDVHTH 59
Query: 114 LAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAK-NSCMDY 171
+ +++ D F + AA GGTT +DF G SL ++ A S +DY
Sbjct: 60 VETVSFNTQSADTFATATVAAACGGTTTIVDFCQQDRGHSLAEAVAKWDGMAGGKSAIDY 119
Query: 172 GFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALA 231
G+H+ + + V +E+EV+ + GI SFK FMAY+G MI+D L++ + G+L
Sbjct: 120 GYHIIVLDPTDSVIEELEVLP-DLGITSFKVFMAYRGMNMIDDVTLLKTLDKAVKTGSLV 178
Query: 232 MVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHV 291
MVHAENGDA + + + G T P HALSRPP +E EAT RA+ LAE VN P+Y+VHV
Sbjct: 179 MVHAENGDAADYLRDKFVAEGKTAPIYHALSRPPRVEAEATARALALAEIVNAPIYIVHV 238
Query: 292 MSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKA 351
+++EE+ +A+ G R + E L L L DF AKYV +PP RA +
Sbjct: 239 TCEESLEEVMRAKSRGVRALAETCTHYLYLTKEDLERPDF-EGAKYVFTPPARAKKDHDV 297
Query: 352 LQAALATGILQLVGTDHCAFN-STQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQI 410
L AL G+ + V +DHC++ K G +DFR IPNG G+EER+ +V+ V G+I
Sbjct: 298 LWNALRNGVFETVSSDHCSWLFKGHKDRGRNDFRAIPNGAPGVEERLMMVY-QGVNEGRI 356
Query: 411 SVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYE 470
S+T +V L +T A++F ++P+KG I VGSDADI++++P + I + H+ +D + YE
Sbjct: 357 SLTQFVELVATRPAKVFGMFPQKGTIAVGSDADIVLWDPEAEMVIEQTAMHNAMDYSSYE 416
Query: 471 GRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMRPF 509
G +VKG + + G+V+ + P GK+++ R +
Sbjct: 417 GHKVKGVPKTVLLRGKVIVDEGSYVGEPTDGKFLKRRKY 455
>1gkr_A Hydantoinase, non-ATP dependent L-selective hydantoinase;
hydrolase, dihydropyrimidinase, cyclic amidase; HET:
KCX; 2.60A {Arthrobacter aurescens} SCOP: b.92.1.3
c.1.9.6
Length = 458
Score = 599 bits (1546), Expect = 0.0
Identities = 124/462 (26%), Positives = 212/462 (45%), Gaps = 14/462 (3%)
Query: 53 SKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHT 112
+++K +V++ AD+ V+DG V A+ + + + + +DA GKFVMPG +D H
Sbjct: 2 FDVIVKNCRLVSSDGITEADILVKDGKVAAISADTSDVEASRTIDAGGKFVMPGVVDEHV 61
Query: 113 HLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAK-NSCMD 170
H+ ++ F +A GG T I+ I + F +K+A +D
Sbjct: 62 HI-IDMDLKNRYGRFELDSESAAVGGITTIIEMPITFPPTTTLDAFLEKKKQAGQRLKVD 120
Query: 171 YGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFM---INDELLIEGFKRCKSL 227
+ + + E+ M + G FK MA M ++D L E F+ +
Sbjct: 121 FALYGGGVPGNL---PEIRKMH-DAGAVGFKSMMAASVPGMFDAVSDGELFEIFQEIAAC 176
Query: 228 GALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLY 287
G++ +VHAEN + QK++ G + S+P E EA RA+ L + L
Sbjct: 177 GSVIVVHAENETIIQALQKQIKAAGGKDMAAYEASQPVFQENEAIQRALLLQKEAGCRLI 236
Query: 288 VVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASG 347
V+HV + D +E I +A+ GQ V E L + ++PP+R++
Sbjct: 237 VLHVSNPDGVELIHQAQSEGQDVHCESGPQYLNITTDDAERI----GPYMKVAPPVRSAE 292
Query: 348 HNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVES 407
N L L G++ +G+DH K G D K NG G+E + ++ V
Sbjct: 293 MNIRLWEQLENGLIDTLGSDHGGHPVEDKEPGWKDVWKAGNGALGLETSLPMMLTNGVNK 352
Query: 408 GQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTN 467
G++S+ V + + A++F +YP+KG + VGSDAD++I + + ++ A S +
Sbjct: 353 GRLSLERLVEVMCEKPAKLFGIYPQKGTLQVGSDADLLILDLDIDTKVDASQFRSLHKYS 412
Query: 468 VYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMRPF 509
++G V G +T+ G VV E E+ V G G+++ R +
Sbjct: 413 PFDGMPVTGAPVLTMVRGTVVAEKGEVLVEQGFGQFVTRRNY 454
>2fty_A Dihydropyrimidinase; alpha/beta barrel, beta-sandwich, hydrolase;
HET: KCX; 2.40A {Lachancea kluyveri} SCOP: b.92.1.3
c.1.9.6 PDB: 2fvk_A* 2fvm_A*
Length = 559
Score = 558 bits (1439), Expect = 0.0
Identities = 148/540 (27%), Positives = 248/540 (45%), Gaps = 66/540 (12%)
Query: 55 ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHL 114
++IK G + A A++ V +G V + +I+ +V+DA G F+ PGGID H H+
Sbjct: 5 LIIKNGIICTASDIYAAEIAVNNGKVQLIAASIDPSLGSEVIDAEGAFITPGGIDAHVHV 64
Query: 115 AMEF-MGSETIDDFFSGQAAALAGGTTMHIDFVIP-INGSLTAGFEA------YEKKAKN 166
+ + +D +A+AGGTT + F ++ + E +
Sbjct: 65 DEPLKLLGDVVDTMEHATRSAVAGGTTTVVAFSTQDVSKKGPSALAESVKLDVDEYSEQT 124
Query: 167 SCMDYGFHMAITKWDEVVSDEMEVM-------VKEKGINSFKFFMAYKGSFMINDELLIE 219
DYG H+ + + ++ + E++ + G++S K FM Y G I+D ++
Sbjct: 125 LYCDYGLHLILFQIEKPSVEARELLDVQLQAAYNDYGVSSVKMFMTYPG-LQISDYDIMS 183
Query: 220 GFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLA 279
+ G M+HAENGD V + + E G+T H +SRP ++EGEAT RAI LA
Sbjct: 184 AMYATRKNGFTTMLHAENGDMVKWMIEALEEQGLTDAYYHGVSRPSIVEGEATNRAITLA 243
Query: 280 EFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVT------ 333
++TP+ VHV S A E I +A+ G +V E +L D+
Sbjct: 244 TTMDTPILFVHVSSPQAAEVIKQAQTKGLKVYAETCPQYALLSDAITRCHHHGEVESYGV 303
Query: 334 --------------------AAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNS 373
+KY+ SPPIR G K++ + G +VG+DHC++N
Sbjct: 304 GIDLSSISESPFTNPDDRFIGSKYICSPPIRPEGTQKSIWKGMNNGTFTIVGSDHCSYNY 363
Query: 374 TQKAFGI-------------DDFRKIPNGVNGIEERMHLVWDTMVESGQI-SVTDYVRLT 419
+K +FR IPNG+ G+ RM L++D G + S+ V +
Sbjct: 364 YEKTSTASKHRAFDPENNKNGEFRYIPNGLPGVCTRMPLLYDYGYLRGNLTSMMKLVEIQ 423
Query: 420 STECARIFNVYPRKGAILVG-SDADIIIFNPNSS--------FEITARSHHSRLDTNVYE 470
T A+++ +YP+KG+IL G SDAD++I+ P+ S IT + D +E
Sbjct: 424 CTNPAKVYGMYPQKGSILPGVSDADLVIWYPDDSKKEYNSKPKLITNKLMEHNCDYTPFE 483
Query: 471 GRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMRPFNYLFHGLDKADAKYLSSLQAP 530
G +K TI G++V++ E+ GKY++ R +++ ++ ++ ++P
Sbjct: 484 GIEIKNWPRYTIVKGKIVYKEGEILKENADGKYLK-RGKSFMCTPKNEWVTEWRPKYESP 542
>3e74_A Allantoinase; (beta/alpha)8-barrel domain, small beta-sheet domain,
hydrolase, metal-binding, purine metabolism, zinc; HET:
KCX; 2.10A {Escherichia coli}
Length = 473
Score = 466 bits (1201), Expect = e-161
Identities = 122/460 (26%), Positives = 204/460 (44%), Gaps = 26/460 (5%)
Query: 55 ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHL 114
++IK GTV+ + ++ D+ V+ G + A+ ++ +V+DA+G V PG +D HTH+
Sbjct: 25 LIIKNGTVILENEARVVDIAVKGGKIAAIGQDLGDAK--EVMDASGLVVSPGMVDAHTHI 82
Query: 115 AMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLT--AGFEAYEKKAKNSCM-DY 171
+ G + + +G AA GG T I+ + + A E AK D
Sbjct: 83 SE--PGRSHWEGYETGTRAAAKGGITTMIEMPLNQLPATVDRASIELKFDAAKGKLTIDA 140
Query: 172 GFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFM-------INDELLIEGFKRC 224
+ ++ D + + + G+ FK F+A G +ND +G ++
Sbjct: 141 AQLGGLVSYNI---DRLHELDEV-GVVGFKCFVATCGDRGIDNDFRDVNDWQFFKGAQKL 196
Query: 225 KSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNT 284
LG +VH EN E + G + SRP E EA R + LA+
Sbjct: 197 GELGQPVLVHCENALICDELGEEAKREGRVTAHDYVASRPVFTEVEAIRRVLYLAKVAGC 256
Query: 285 PLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIR 344
L+V HV S + +EE+ +AR+ GQ + E VLD SPPIR
Sbjct: 257 RLHVCHVSSPEGVEEVTRARQEGQDITCESCPHYFVLDTDQFEEIG----TLAKCSPPIR 312
Query: 345 ASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTM 404
+ K + L G + + +DH KA + K G+ G++ M +++D
Sbjct: 313 DLENQKGMWEKLFNGEIDCLVSDHSPCPPEMKA---GNIMKAWGGIAGLQSCMDVMFDEA 369
Query: 405 VESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRL 464
V+ +S+ + +L +T A IF + +KG I G DAD + PNSS+ +T R
Sbjct: 370 VQKRGMSLPMFGKLMATNAADIFGL-QQKGRIAPGKDADFVFIQPNSSYVLTNDDLEYRH 428
Query: 465 DTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYI 504
+ Y GR + ++ TI G V+++ ++ V G++I
Sbjct: 429 KVSPYVGRTIGARITKTILRGDVIYDIEQGFPVAPKGQFI 468
>3hm7_A Allantoinase; metallo-dependent hydrolase, protein structure
initiative, PSI-2, NEW YORK structural genomix research
CON nysgxrc; 2.60A {Bacillus halodurans}
Length = 448
Score = 455 bits (1173), Expect = e-157
Identities = 119/453 (26%), Positives = 206/453 (45%), Gaps = 21/453 (4%)
Query: 55 ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINV-GDDVKVLDATGKFVMPGGIDPHTH 113
++I+ TVV ADV + +GIV A+ ++ DD +D TG + PG +D H H
Sbjct: 8 LIIRSSTVVTETTTYRADVAIRNGIVSAITEPGSISSDDGPAIDGTGLHLFPGMVDVHVH 67
Query: 114 LAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLT--AGFEAYEKKAK-NSCMD 170
G + F SG + AGG T + D + N + + A S +D
Sbjct: 68 FNE--PGRTEWEGFASGSKSLAAGGVTTYFDMPLNSNPPTITREELDKKRQLANEKSLVD 125
Query: 171 YGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGS---FMINDELLIEGFKRCKSL 227
Y F + + D ++ + G+ FK FM+ G+ +DE L++G K+ +L
Sbjct: 126 YRFWGGLVPGNI---DHLQDLHDG-GVIGFKAFMSECGTDDFQFSHDETLLKGMKKIAAL 181
Query: 228 GALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLY 287
G++ VHAE+ + V IE + ++ +RP + E EA R +R A+ P++
Sbjct: 182 GSILAVHAESNEMVNALTTIAIEEQRLTVKDYSEARPIVSELEAVERILRFAQLTCCPIH 241
Query: 288 VVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVT-AAKYVMSPPIRAS 346
+ HV S ++ I +A+ G V E L+ +F +PP+R
Sbjct: 242 ICHVSSRKVLKRIKQAKGEGVNVSVETCPHYLLFSLD-----EFAEIGYLAKCAPPLRER 296
Query: 347 GHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVE 406
+ L L G + L+ +DH K ++ G+ G + + ++
Sbjct: 297 QEVEDLWDGLMAGEIDLISSDHSPSLPQMKTGK--TIFEVWGGIAGCQNTLAVMLTEGYH 354
Query: 407 SGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDT 466
++ +T V+L STE A+ F +YP+KG I VG++A + + N S+ + A + R
Sbjct: 355 KRKMPLTQIVQLLSTEPAKRFGLYPQKGTIQVGAEASFTLIDLNESYTLNASDLYYRHPI 414
Query: 467 NVYEGRRVKGKVEVTIAGGRVVWENDELNVVPG 499
+ Y G+R +GKV+ TI G+ V+++ E +
Sbjct: 415 SPYVGQRFRGKVKHTICQGKHVYQDHEGHHHHH 447
>2gwn_A Dihydroorotase; zinc-binding prote structural genomics, PSI,
protein structure initiative, MID center for structural
genomics, MCSG; HET: KCX GOL; 1.85A {Porphyromonas
gingivalis}
Length = 452
Score = 278 bits (714), Expect = 2e-88
Identities = 92/468 (19%), Positives = 178/468 (38%), Gaps = 32/468 (6%)
Query: 54 KILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDV----KVLDATGKFVMPGGID 109
KIL++ + N V ++ + + DD +V++ +G + PG ID
Sbjct: 5 KILLRNALITNEGKTFPGSVMIDGAFISRIIEGELPADDNLSADEVIECSGLRLFPGCID 64
Query: 110 PHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDF--VIPINGSLTAGFEAYEKKAKN- 166
H E G S AA+AGG T +D P + +
Sbjct: 65 DQVHF-REP-GLTHKATIASESRAAVAGGVTSFMDMPNTNPPTTMWER-LLEKRQIGADT 121
Query: 167 SCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAY-KGSFMINDELLIEGFKRCK 225
+ +YGF T D + DE++ + + + K F+ G+ +++++ +E K
Sbjct: 122 AWANYGFFFGGTN-DNI--DEIKRV-DKHLVPGLKLFLGSSTGNMLVDNKETLE--KIFG 175
Query: 226 SLGALAMVHAENGDAVFEGQKRMIELGIT--GPEGHALSRPPLLEGEATTRAIRLAEFVN 283
L H E + + ++ H L R ++ A+ LAE +N
Sbjct: 176 ECDLLIATHCEKEEIIRANKEHYKAKYGNDLDIHFHPLIRSEEACYRSSAEAVELAERMN 235
Query: 284 TPLYVVHVMSMDAMEEIAKARK-AGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPP 342
L+++H+ + + A +R+ E V L D+ K +P
Sbjct: 236 ARLHILHLSTEKELSLFRNDIPTAQKRITSEVCVHHLWFSDTDY--GRLGNRIK--WNPA 291
Query: 343 IRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWD 402
I+ +AL+AA+ G + ++ TDH +K + +G ++ + +
Sbjct: 292 IKKESDREALRAAVRNGRIDIIATDHAPHLLREKE---GSCLQAASGGPLVQHSLLALL- 347
Query: 403 TMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHS 462
+ G S+ + V T+ A +F + ++G I G AD+++ +P+S ++A + S
Sbjct: 348 ELCNQGIFSIEEIVSKTAHIPATLFAI-EKRGYIRPGYYADLVLVDPSSPHTVSADNILS 406
Query: 463 RLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMRPFN 510
+ +EG V T G + + L + + FN
Sbjct: 407 LCGWSPFEGFTFSHSVAYTFVNGCLAYAKGRLAESRPTVHPLF---FN 451
>3gri_A Dihydroorotase, dhoase; hydrolase, IDP00795, metal-binding,
pyrimidine biosynthesis, structural genomics; 2.00A
{Staphylococcus aureus subsp}
Length = 424
Score = 213 bits (544), Expect = 9e-64
Identities = 113/472 (23%), Positives = 185/472 (39%), Gaps = 82/472 (17%)
Query: 55 ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHL 114
LIK G V+ Q AD+ ++ ++ + P I + V ++DA G FV PG +D H HL
Sbjct: 2 KLIKNGKVLQNGELQQADILIDGKVIKQIAPAIEPSNGVDIIDAKGHFVSPGFVDVHVHL 61
Query: 115 AMEFMGSETIDDFFSGQAAALAGG-TTMH--------------IDFVI-------PIN-- 150
E G E + +G AA GG TT+ + + +
Sbjct: 62 R-E-PGGEYKETIETGTKAAARGGFTTVCPMPNTRPVPDSVEHFEALQKLIDDNAQVRVL 119
Query: 151 --GSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKG 208
S+T G + + + ++G +F G
Sbjct: 120 PYASITTRQL-------------GKELV----------DFPAL-VKEGAFAF----TDDG 151
Query: 209 SFMINDELLIEGFKRCKSLGALAMVHAE-----NGDAVFEGQKRMIELGITGPEGHALSR 263
+ ++ EG + + H E G A+ EG KR ELGI G
Sbjct: 152 VGVQTASMMYEGMIEAAKVNKAIVAHCEDNSLIYGGAMHEG-KRSKELGIPG-------I 203
Query: 264 PPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSG--LVL 321
P + E R + LAE +V HV + +++ I A++AG V E V+ L+L
Sbjct: 204 PNICESVQIARDVLLAEAAGCHYHVCHVSTKESVRVIRDAKRAGIHVTAE--VTPHHLLL 261
Query: 322 DDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGID 381
+ + K M+PP+R++ +AL L G + + TDH +KA
Sbjct: 262 TEDDI--PGNNAIYK--MNPPLRSTEDREALLEGLLDGTIDCIATDHAPHARDEKA---Q 314
Query: 382 DFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSD 441
K P G+ G E L++ V++G ++ V + + FN+ G +
Sbjct: 315 PMEKAPFGIVGSETAFPLLYTHFVKNGDWTLQQLVDYLTIKPCETFNL--EYGTLKENGY 372
Query: 442 ADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDE 493
AD+ I + +S EI S+ D + G +V G +T+ G V +E D+
Sbjct: 373 ADLTIIDLDSEQEIKGEDFLSKADNTPFIGYKVYGNPILTMVEGEVKFEGDK 424
>3mpg_A Dihydroorotase, dhoase; hydrolase; 2.60A {Bacillus anthracis}
Length = 428
Score = 206 bits (526), Expect = 4e-61
Identities = 115/474 (24%), Positives = 190/474 (40%), Gaps = 84/474 (17%)
Query: 54 KILIKGGTVVN-AHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHT 112
L K G +N D+ V+DG + V NI D+ +V+D GK + PG +D H
Sbjct: 2 NYLFKNGRYMNEEGKIVATDLLVQDGKIAKVAENIT-ADNAEVIDVNGKLIAPGLVDVHV 60
Query: 113 HLAMEFMGSETIDDFFSGQAAALAGG-TTMH--------------IDFVI-------PIN 150
HL E G E + +G AA GG TT+ ++ + +N
Sbjct: 61 HLR-E-PGGEHKETIETGTLAAAKGGFTTICAMPNTRPVPDCREHMEDLQNRIKEKAHVN 118
Query: 151 ----GSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAY 206
G++T G M + E + KE G +F
Sbjct: 119 VLPYGAITVRQA-------------GSEMT----------DFETL-KELGAFAF----TD 150
Query: 207 KGSFMINDELLIEGFKRCKSLGALAMVHAE-----NGDAVFEGQKRMIELGITGPEGHAL 261
G + + +++ KR L + H E N V EG K + G+ G
Sbjct: 151 DGVGVQDASMMLAAMKRAAKLNMAVVAHCEENTLINKGCVHEG-KFSEKHGLNG------ 203
Query: 262 SRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSG--L 319
P + E R I LAE + +V HV + ++ I A++AG +V E V+ L
Sbjct: 204 -IPSVCESVHIARDILLAEAADCHYHVCHVSTKGSVRVIRDAKRAGIKVTAE--VTPHHL 260
Query: 320 VLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFG 379
VL + + K M+PP+R ++AL L G + ++ TDH + +KA
Sbjct: 261 VLCEDDI--PSADPNFK--MNPPLRGKEDHEALIEGLLDGTIDMIATDHAPHTAEEKA-- 314
Query: 380 IDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVG 439
+ P G+ G E L++ +V+ G I++ ++ + + A F + G + G
Sbjct: 315 -QGIERAPFGITGFETAFPLLYTNLVKKGIITLEQLIQFLTEKPADTFGL--EAGRLKEG 371
Query: 440 SDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDE 493
ADI I + EI + S+ + G + +G +TI GG++ W+ +
Sbjct: 372 RTADITIIDLEQEEEIDPTTFLSKGKNTPFAGWKCQGWPVMTIVGGKIAWQKES 425
>1xrt_A Dihydroorotase, dhoase; amidohydrolase, metalloenzyme, pyrimidine;
1.61A {Aquifex aeolicus} SCOP: b.92.1.3 c.1.9.6 PDB:
1xrf_A 3d6n_A*
Length = 467
Score = 199 bits (508), Expect = 5e-58
Identities = 107/474 (22%), Positives = 196/474 (41%), Gaps = 88/474 (18%)
Query: 53 SKILIKGGTVVNAHHQ--QIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDP 110
K+++K G V++ D+ VE+G + + NI + +++DA G V PG ID
Sbjct: 47 LKLIVKNGYVIDPSQNLEGEFDILVENGKIKKIDKNIL-VPEAEIIDAKGLIVCPGFIDI 105
Query: 111 HTHLAMEFMGSETIDDFFSGQAAALAGG-TTMH--------------IDFVI-------- 147
H HL + G +D SG A+AGG TT+ +++++
Sbjct: 106 HVHLR-D-PGQTYKEDIESGSRCAVAGGFTTIVCMPNTNPPIDNTTVVNYILQKSKSVGL 163
Query: 148 ----PINGSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFF 203
P G++T G + G +A + + KE G +F
Sbjct: 164 CRVLPT-GTITKGRK-------------GKEIA----------DFYSL-KEAGCVAF--- 195
Query: 204 MAYKGSFMINDELLIEGFKRCKSLGALAMVHAE----NGDAVFEGQKRMIELGITGPEGH 259
GS +++ ++ + + LG M H E + EG + LG++
Sbjct: 196 -TDDGSPVMDSSVMRKALELASQLGVPIMDHCEDDKLAYGVINEG-EVSALLGLSS---- 249
Query: 260 ALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSG- 318
R P E R LA+ +++ HV + ++E I ++ G ++ E V+
Sbjct: 250 ---RAPEAEEIQIARDGILAQRTGGHVHIQHVSTKLSLEIIEFFKEKGVKITCE--VNPN 304
Query: 319 -LVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKA 377
L+ + + + A+ ++PP+R AL + GI+ TDH + +K
Sbjct: 305 HLLFTEREV--LNSGANAR--VNPPLRKKEDRLALIEGVKRGIIDCFATDHAPHQTFEK- 359
Query: 378 FGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAIL 437
+ G+ G++ + + G IS+ + + + ARI V G +
Sbjct: 360 ---ELVEFAMPGIIGLQTALPSAL-ELYRKGIISLKKLIEMFTINPARIIGV--DLGTLK 413
Query: 438 VGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWEN 491
+GS ADI IF+PN + + ++ S+ G+ +KGKV TI G++V+++
Sbjct: 414 LGSPADITIFDPNKEWILNEETNLSKSRNTPLWGKVLKGKVIYTIKDGKMVYKD 467
>2z00_A Dihydroorotase; zinc binding protein, hydrolase, metal-binding,
pyrimidine biosynthesis, structural genomics, NPPSFA;
2.42A {Thermus thermophilus}
Length = 426
Score = 186 bits (475), Expect = 1e-53
Identities = 102/480 (21%), Positives = 179/480 (37%), Gaps = 96/480 (20%)
Query: 55 ILIKGGTVVNAHHQ-QIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTH 113
ILI+ +V+A + ADV + +G +++++ G+ +V+D TG F+ PG +D H H
Sbjct: 2 ILIRNVRLVDARGERGPADVLIGEGRILSLEG----GEAKQVVDGTGCFLAPGFLDLHAH 57
Query: 114 LAMEFMGSETIDDFFSGQAAALAGG-TTMH--------------IDFVI----------- 147
L E G E +D FSG AA+ GG T + + +
Sbjct: 58 LR-E-PGEEVKEDLFSGLLAAVRGGYTDLVSMPNTKPPVDTPEAVRALKEKAKALGLARL 115
Query: 148 -PINGSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAY 206
P +LT E G + ++ +E G
Sbjct: 116 HPA-AALTEKQE-------------GKTLT----------PAGLL-REAGAVLL----TD 146
Query: 207 KGSFMINDELLIEGFKRCKSLGALAMVHAE-----NGDAVFEGQKRMIELGITGPEGHAL 261
G + +L G LG VHAE + +G LG+ G
Sbjct: 147 DGRTNEDAGVLAAGLLMAAPLGLPVAVHAEDAGLRRNGVMNDG-PLADLLGLPG------ 199
Query: 262 SRPPLLEGEATTRAIRLAEFVNTP------LYVVHVMSMDAMEEIAKARKAGQRVIGEPV 315
PP E R + + + L+V H+ + +E + +A++AG V E
Sbjct: 200 -NPPEAEAARIARDLEVLRYALRRSPATPRLHVQHLSTKRGLELVREAKRAGLPVTAE-- 256
Query: 316 VSG--LVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNS 373
+ L L + L F K ++PP+R +AL L G L + TDH
Sbjct: 257 ATPHHLTLTEEAL--RTFDPLFK--VAPPLRGEEDREALLEGLLDGTLDAIATDHAPHTL 312
Query: 374 TQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRK 433
+K D + P G+ +E L++ + + V L + R+ +
Sbjct: 313 AEKE---KDLLRAPFGIPSLEVAFPLLYTELHLKRGFPLQRLVELFTDGPRRVLGL--PP 367
Query: 434 GAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDE 493
+ G++A +++ +P + + S+ + + G + G +T+ GR+V E +
Sbjct: 368 LHLEEGAEASLVLLSPKER-PVDPSAFASKARYSPWAGWVLGGWPVLTLVAGRIVHEALK 426
>1e9y_B Urease subunit beta; hydrolase, dodecamer; HET: KCX; 3.00A
{Helicobacter pylori} SCOP: b.92.1.1 c.1.9.2 PDB:
1e9z_B* 3qga_C* 3qgk_C*
Length = 569
Score = 160 bits (405), Expect = 7e-43
Identities = 56/422 (13%), Positives = 118/422 (27%), Gaps = 49/422 (11%)
Query: 43 GGPQCGIQSSSKILIKGGTVVNAHHQQIADVYVEDGIVVA------------VQPNINVG 90
+ ++I +V+ AD+ ++DG + V+ N++VG
Sbjct: 56 SQSNNPSKEELDLIITNALIVDYTGIYKADIGIKDGKIAGIGKGGNKDMQDGVKNNLSVG 115
Query: 91 DDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPIN 150
+ L G V GGID H H + F SG + GGT
Sbjct: 116 PATEALAGEGLIVTAGGIDTHIHFISP---QQIPTAFASGVTTMIGGGTGPADGTNATTI 172
Query: 151 GSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSF 210
+ + A+ M+ GF ++ + E G FK + +
Sbjct: 173 TPGRRNLKWMLRAAEEYSMNLGFLAKGNASNDASLADQI----EAGAIGFKIHEDWGTTP 228
Query: 211 MINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGE 270
+ L +H + + + M + EG
Sbjct: 229 SAINHAL----DVADKYDVQVAIHTDTLNEAGCVEDTMAAIA------GRTMHTFHTEGA 278
Query: 271 ATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSD 330
A + + + + V E +++ S
Sbjct: 279 GGGHAPDIIKVAGEHNILPA----------STNPTIPFTVNTEAEHMDMLMVCHHKDKSI 328
Query: 331 FVTAAKYVMSPPIRASGHNKALQAALA-TGILQLVGTDHCAFNSTQKAFGIDDFRKIPNG 389
++ S A + L G + +D A + +
Sbjct: 329 KE-DVQFADSRIRP---QTIAAEDTLHDMGAFSITSSDSQAMGRVG-----EVITRTWQT 379
Query: 390 VNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNP 449
+ ++ + + ++ + Y+ + A + G++ VG AD+++++P
Sbjct: 380 ADKNKKEFGRLKEEKGDNDNFRIKRYLSKYTINPAIAHGISEYVGSVEVGKVADLVLWSP 439
Query: 450 NS 451
Sbjct: 440 AF 441
>4ubp_C Protein (urease (chain C)); bacillus pasteurii, nickel,
acetohydroxamic acid, metalloenzyme, hydrolase; HET:
KCX; 1.55A {Sporosarcina pasteurii} SCOP: b.92.1.1
c.1.9.2 PDB: 1s3t_C* 2ubp_C* 3ubp_C* 1ubp_C* 1ie7_C*
Length = 570
Score = 144 bits (364), Expect = 2e-37
Identities = 75/476 (15%), Positives = 130/476 (27%), Gaps = 88/476 (18%)
Query: 55 ILIKGGTVVNAHHQQIADVYVEDGIVVA------------VQPNINVGDDVKVLDATGKF 102
+L+ +++ AD+ V+DG +V V PN+ VG +V+ A GK
Sbjct: 69 LLLTNALILDYTGIYKADIGVKDGYIVGIGKGGNPDIMDGVTPNMIVGTATEVIAAEGKI 128
Query: 103 VMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGG-TTMHIDFVIPINGSLTAG----- 156
V GGID H H ALA G TT+ P GS
Sbjct: 129 VTAGGIDTHVHFINP-----------DQVDVALANGITTLFGGGTGPAEGSKATTVTPGP 177
Query: 157 --FEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMIND 214
E K + ++ G E + G K +
Sbjct: 178 WNIEKMLKSTEGLPINVGILGKGHGSSIAPIMEQ----IDAGAAGLKIHEDWG----ATP 229
Query: 215 ELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTR 274
+ +H++ + + + + +EG
Sbjct: 230 ASIDRSLTVADEADVQVAIHSDTLNEAGFLEDTL------RAINGRVIHSFHVEGAGGGH 283
Query: 275 AIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTA 334
A + P + R I E + +V +
Sbjct: 284 APDIMAMAGHPNVLPSS--------TNPTRPFTVNTIDEHLDMLMVCHHL---KQNIPED 332
Query: 335 AKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIE 394
+ S + + + GI+ ++ TD A G R +
Sbjct: 333 VAFADSRIRPETIAAEDI--LHDLGIISMMSTDALAMG----RAGEMVLRTWQTADKMKK 386
Query: 395 ERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFE 454
+R L + S + YV + A + G+I G AD++++ P F
Sbjct: 387 QRGPL-AEEKNGSDNFRLKRYVSKYTINPAIAQGIAHEVGSIEEGKFADLVLWEP-KFFG 444
Query: 455 ITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVW--ENDELNVVPGSGKYIEMRP 508
+ K + I GG + + D +P + R
Sbjct: 445 V---------------------KADRVIKGGIIAYAQIGDPSASIPTPQPVM-GRR 478
>1onw_A Isoaspartyl dipeptidase; amidohydrolase, hydrolase,
metalloprotease; HET: KCX; 1.65A {Escherichia coli}
SCOP: b.92.1.7 c.1.9.13 PDB: 1onx_A* 1po9_A* 1poj_A*
1pok_B* 2aqo_A* 1ybq_A* 2aqv_A*
Length = 390
Score = 114 bits (287), Expect = 6e-28
Identities = 77/457 (16%), Positives = 155/457 (33%), Gaps = 88/457 (19%)
Query: 50 QSSSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNIN--VGDDVKVLDATGKFVMPGG 107
++ L++G + + I DV V +G ++AV NI + + V+D +G+ + PG
Sbjct: 5 TAAGFTLLQGAHLYAPEDRGICDVLVANGKIIAVASNIPSDIVPNCTVVDLSGQILCPGF 64
Query: 108 IDPHTHLAM-EFMGSETIDDFFSGQAAALAGGTTMHI-----DFVIPINGSLTAGFEAYE 161
ID H HL T + G T + D + SL A A
Sbjct: 65 IDQHVHLIGGGGEAGPTTRTPEVALSRLTEAGVTSVVGLLGTDSISRHPESLLAKTRALN 124
Query: 162 KKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGF 221
++ ++ M G + ++ S E +V + ++ I + S + L
Sbjct: 125 EEGISAWMLTGAYHVPSR-TITGSVEKDVAIIDRVIGVKCAISDH-RSAAPDVYHLANMA 182
Query: 222 KRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEF 281
+ G L G+ + + G + + + +
Sbjct: 183 AESRVGGLLG------------GKPGVTVFHM----GDSKK-----ALQPIYDLLENCDV 221
Query: 282 VNTPLYVVHV-MSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMS 340
+ L HV ++ E+ + + G + +T++ +
Sbjct: 222 PISKLLPTHVNRNVPLFEQALEFARKGGTI--------------------DITSS---ID 258
Query: 341 PPIRAS-GHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHL 399
P+ + G +A+QA + + L + + + GV G E +
Sbjct: 259 EPVAPAEGIARAVQAGIPLARVTLSSDGNGSQPFFDD-----EGNLTHIGVAGFETLLET 313
Query: 400 VWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARS 459
V +V+ S++D +R ++ A N+ KG IL G+DAD+++ P I
Sbjct: 314 VQV-LVKDYDFSISDALRPLTSSVAGFLNL-TGKGEILPGNDADLLVMTPE--LRIEQ-- 367
Query: 460 HHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNV 496
A G+++ ++ + V
Sbjct: 368 ---------------------VYARGKLMVKDGKACV 383
>2ics_A Adenine deaminase; TIM barrel, binuclear zinc, adenine complex,
amidohydrolase, structural genomics, PSI, protein
structure initiative; HET: KCX ADE; 2.30A {Enterococcus
faecalis} SCOP: b.92.1.8 c.1.9.14
Length = 379
Score = 113 bits (283), Expect = 2e-27
Identities = 66/442 (14%), Positives = 121/442 (27%), Gaps = 81/442 (18%)
Query: 55 ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHL 114
+LIK G VN ++ +++ + AV I+ + G +V G ID H H
Sbjct: 7 LLIKNGQTVNG---MPVEIAIKEKKIAAVAATISGSAKETIHLEPGTYVSAGWIDDHVHC 63
Query: 115 AMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFH 174
F D+ + G T ID + + A+ + +
Sbjct: 64 ---FEKMALYYDYPD--EIGVKKGVTTVIDA----GTTGAENIHEFYDLAQQAKTNVFGL 114
Query: 175 MAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVH 234
+ I+KW V DE+ + K + K + G K S +
Sbjct: 115 VNISKWGIVAQDELADLSKVQASLVKKAIQELPD--------FVVGIKARMSRTVIGDNG 166
Query: 235 AENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSM 294
+ + Q+ E+ + G A + + F ++ +
Sbjct: 167 ITPLELAKQIQQENQEIPLMVHIGSAPPHLDEILALMEKGDVLTHCFNGKENGILDQATD 226
Query: 295 DAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQA 354
+ +A G S + +
Sbjct: 227 KIKDFAWQAYNKGVV----------------------------FDIGHGTDSFNFHVAET 258
Query: 355 ALATGIL-QLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVT 413
AL G+ + TD N NG + + + G
Sbjct: 259 ALREGMKAASISTDIYIRNR----------------ENGPVYDLATTMEKLRVVGY-DWP 301
Query: 414 DYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRR 473
+ + + A F++ +KG + +G DAD+ IF G
Sbjct: 302 EIIEKVTKAPAENFHL-TQKGTLEIGKDADLTIFTI----------QAEEKTLTDSNGLT 350
Query: 474 VKG----KVEVTIAGGRVVWEN 491
+ TI GG++
Sbjct: 351 RVAKEQIRPIKTIIGGQIYDNE 372
>2ogj_A Dihydroorotase; TIM barrel, binuclear zinc, imidazole complex,
amido hydrola 9244B, structural genomics, PSI-2; HET:
KCX; 2.62A {Agrobacterium tumefaciens}
Length = 417
Score = 107 bits (268), Expect = 2e-25
Identities = 68/476 (14%), Positives = 135/476 (28%), Gaps = 94/476 (19%)
Query: 44 GPQCGIQSSSKILIKGGTVV---NAHHQQIADVYVE-DGIVVAVQPNINVGDDVKVLDAT 99
G Q + IL+ V Q D+ + DG + AV + D + +DA
Sbjct: 6 GEQAKTPLQAPILLTNVKPVGFGKGASQSSTDILIGGDGKIAAVGSALQAPADTQRIDAK 65
Query: 100 GKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEA 159
G F+ PG +D H H+ +I G T +D
Sbjct: 66 GAFISPGWVDLHVHI-WHGGTDISIR----PSECGAERGVTTLVDAGSA----------- 109
Query: 160 YEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIE 219
++ + + + G+ + + I+ + ++E
Sbjct: 110 -------GEANFHGFREYIIEPSRERIKAFLNLGSIGLVACNRVPELRDIKDIDLDRILE 162
Query: 220 GFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLA 279
+ G K ITG G ++A
Sbjct: 163 CYAE--------------NSEHIVGLKVRASHVITGSWGV----------TPVKLGKKIA 198
Query: 280 EFVNTPLYVVHVMSMDA-MEEIAKARKAGQRV--IGEPVVSGLVLDDSWLWHS--DFVTA 334
+ + P+ +VHV A +E+ + G V +++D L++
Sbjct: 199 KILKVPM-MVHVGEPPALYDEVLEILGPGDVVTHCFNGKSGSSIMEDEDLFNLAERCAGE 257
Query: 335 AKYVMSPPIRASGHNKALQAALATGILQL-VGTDHCAFNSTQKAFGIDDFRKIPNGVNGI 393
+ AS K +AA+A G+L + TD + +
Sbjct: 258 GIRLDIGHGGASFSFKVAEAAIARGLLPFSISTDLHGHSMNFPVWD-------------- 303
Query: 394 EERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSF 453
+ ++ + V + A + + + + VG AD +F+
Sbjct: 304 ---LATTMSKLLSVDM-PFENVVEAVTRNPASVIRL-DMENRLDVGQRADFTVFDLV--- 355
Query: 454 EITARSHHSRLDTNVYEGRRVKGK----VEVTIAGGRVVWENDELNVVPGSGKYIE 505
+ L+ G + K + G + + + P + K +
Sbjct: 356 -------DADLEATDSNGDVSRLKRLFEPRYAVIGAEAIAASRYI---PRARKLVR 401
>3ooq_A Amidohydrolase; structural genomics, protein structure INI NEW YORK
structural genomix research consortium, NYSGXRC, H
PSI-2; 2.06A {Thermotoga maritima}
Length = 396
Score = 84.3 bits (208), Expect = 1e-17
Identities = 79/441 (17%), Positives = 139/441 (31%), Gaps = 98/441 (22%)
Query: 52 SSKILIKGGTVVNAHHQQI-ADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDP 110
S KIL K TV + DV V +G V V NI D +++D TGKF+ PG +D
Sbjct: 4 SVKILFKNATVFPITSRPFKGDVLVSNGKVEKVGENIED-PDAEIVDLTGKFLFPGFVDA 62
Query: 111 HTHLAM--EFMGSETIDDFFSGQAA-------------------ALAGGTTMHIDFVIPI 149
H+H+ + E +G D + ALAGG T ++P
Sbjct: 63 HSHIGLFEEGVGYYYSDGNEATDPVTPHVKALDGFNPQDPAIERALAGGVTSV--MIVPG 120
Query: 150 NGSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGS 209
+ + G + +E + + + G N + + K +
Sbjct: 121 SANPVGGQGSV------------IKFRSIIVEECIVKDPAGLKMAFGENPKRVYGERKQT 168
Query: 210 F---MINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPL 266
M ++ + F + K+ + + G E +M +R
Sbjct: 169 PSTRMGTAGVIRDYFTKVKNYMKKKELAQKEGKEFTETDLKMEVG-EMVLRKKIPARMHA 227
Query: 267 LEGEATTRAIRLAEFVNTPLYVVHVM-SMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSW 325
+ AIR+AE L + H + + + + V+ P ++
Sbjct: 228 HRADDILTAIRIAEEFGFNLVIEHGTEAYKISKVL---AEKKIPVVVGP-------LLTF 277
Query: 326 -----LWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGI 380
L T AK L G+L + DH
Sbjct: 278 RTKLELKDLTMETIAK---------------LLKD---GVLIALMCDHPVIPL------- 312
Query: 381 DDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGS 440
R + +++ LT A+I + R G+I G
Sbjct: 313 ---EFATVQA-ATAMRYGAKEEDLLKI----------LTVNP-AKILGLEDRIGSIEPGK 357
Query: 441 DADIIIFNPNSSFEITARSHH 461
DAD+++++ F++ +
Sbjct: 358 DADLVVWS-GHPFDMKSVVER 377
>2vun_A Enamidase; nicotinate degradation, binuclear metal center,
amidohydrolases, stereospecificity, hydrolase; 1.89A
{Eubacterium barkeri}
Length = 386
Score = 81.1 bits (200), Expect = 1e-16
Identities = 57/323 (17%), Positives = 102/323 (31%), Gaps = 34/323 (10%)
Query: 53 SKILIK-GGTVVNAHHQ----QIADVYVEDGIVVAVQP--NINVGDDVKVLDATGKFVMP 105
SK +IK G +V+ + Q + VEDG++ A+ + D ++DA G V P
Sbjct: 2 SKTIIKNIGKIVSGDIKSPVLQADTIVVEDGLIAAIGGEELMKDAGDATIIDAAGSTVTP 61
Query: 106 GGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYE---- 161
G +D H H+ ++AL GG T I P +
Sbjct: 62 GLLDTHVHV--SGGDYAPRQKTMDFISSALHGGVTTMISAGSPHFPGRPKDAAGTKALAI 119
Query: 162 --KKAKNSCMDYGFHM---AITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDEL 216
K+ + G + A+ + ++ M KE G+ G+ N E
Sbjct: 120 TLSKSYYNARPAGVKVHGGAVILEKGLTEEDFIEMKKE-GVWIVGEVG--LGTIK-NPED 175
Query: 217 LIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAI 276
+ G +H G ++ + I +
Sbjct: 176 AAPMVEWAHKHGFKVQMHTG-GTSIPGSSTVTADDVIKTKPDVVSHINGGPTAISVQEVD 234
Query: 277 RLAEFVNTPLYVVHVMSMDAMEEI---AKARKAGQRVI-GEPVVSGLVLDDSWLWHSDFV 332
R+ + + + +V + + + A + RVI G SG L + +
Sbjct: 235 RIMDETDFAMEIVQCGNPKIADYVARRAAEKGQLGRVIFGNDAPSGTGLIPLGILRNMCQ 294
Query: 333 TAAKYVMSPPIRASGHNKALQAA 355
A+ + P A+ A
Sbjct: 295 IASMSDIDPE-------VAVCMA 310
Score = 37.6 bits (87), Expect = 0.009
Identities = 32/301 (10%), Positives = 69/301 (22%), Gaps = 58/301 (19%)
Query: 226 SLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPP-LLEGEATTRAIRLAEFVNT 284
++ + H G K + + + + +F+
Sbjct: 95 TMISAGSPHFPGRPKDAAGTKALAITLSKSYYNARPAGVKVHGGAVILEKGLTEEDFIEM 154
Query: 285 PLYVVH---------VMSMD-AMEEIAKARKAGQRVIG---------------------- 312
V + + + A + A K G +V
Sbjct: 155 KKEGVWIVGEVGLGTIKNPEDAAPMVEWAHKHGFKVQMHTGGTSIPGSSTVTADDVIKTK 214
Query: 313 EPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFN 372
VVS + + + + N + +A + F
Sbjct: 215 PDVVSHINGGPTAISVQEVDRIMDETDFAMEIVQCGNPKIADYVARRAAEKGQLGRVIFG 274
Query: 373 STQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPR 432
+ + IP G+ ++ S I V + + ++ +
Sbjct: 275 NDAPS--GTGL--IPLGILRNMCQI------ASMSD-IDPEVAVCMATGNSTAVYGL--N 321
Query: 433 KGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKG--KVEVTIAGGRVVWE 490
G I G +AD+II + + + V + G V
Sbjct: 322 TGVIAPGKEADLIIMDTPLGSVA----------EDAMGAIAAGDIPGISVVLIDGEAVVT 371
Query: 491 N 491
Sbjct: 372 K 372
>3nqb_A Adenine deaminase 2; PSI-II, structural genomics, protein structure
initiative, N SGX research center for structural
genomics, nysgxrc; 2.21A {Agrobacterium tumefaciens}
PDB: 3t81_A 3t8l_A
Length = 608
Score = 82.0 bits (202), Expect = 1e-16
Identities = 68/469 (14%), Positives = 122/469 (26%), Gaps = 84/469 (17%)
Query: 55 ILIKGGTVVNAHHQQI--ADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHT 112
+LI GGT+V+ ++ AD+ + ++ +V + D +V+DA G +V PG ID H
Sbjct: 37 VLITGGTLVDVVTGELRPADIGIVGALIASVHEPASRRDAAQVIDAGGAYVSPGLIDTHM 96
Query: 113 HLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYG 172
H+ S ++ A G TT+ D N G K +N +
Sbjct: 97 HI----ESSMITPAAYA-AAVVARGVTTIVWDPHEFGNVHGVDGVRWAAKAIENLPLRAI 151
Query: 173 F---------HMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKR 223
+ + + ++ I M +G D + +
Sbjct: 152 LLAPSCVPSAPGLERGGADFDAAILADLLSWPEIGGIAEIMNMRGVIE-RDPRMSGIVQA 210
Query: 224 CKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVN 283
+ L H + G++ E + +A+
Sbjct: 211 GLAAEKLVCGH--ARGLKNADLNAFMAAGVSSDH------------ELVSGEDLMAKLRA 256
Query: 284 TPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPI 343
+ + E A L T + +
Sbjct: 257 GLTIELRGSHDHLLPEFVAA---------------LNTLGHLPQTVTLCTDDVF-PDDLL 300
Query: 344 RASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDT 403
+ G + ++ + G+ N+ Q G D I G
Sbjct: 301 QGGGLDDVVRRLVRYGLKPEWALRAATLNAAQ-RLGRSDLGLIAAGRRA----------- 348
Query: 404 MVESGQISVTDYVRLTSTECARIFNVY------PRKGAILVGSDADIIIFNPNS------ 451
D V +V G +LV S
Sbjct: 349 ----------DIVVFEDLNGFSARHVLASGRAVAEGGRMLVDIPTCDTTVLKGSMKLPLR 398
Query: 452 ---SFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVV 497
F + ++ RL T G+ E + G VV +
Sbjct: 399 MANDFLVKSQGAKVRLATIDRPRFTQWGETEADVKDGFVVPPEGATMIS 447
>1ejx_C Urease alpha subunit; alpha-beta barrel, nickel metalloenzyme,
temperature depende structural changes, hydrolase; HET:
KCX; 1.60A {Klebsiella aerogenes} SCOP: b.92.1.1 c.1.9.2
PDB: 1ejw_C* 1fwj_C* 1kra_C 2kau_C* 1ef2_A* 1ejv_C*
1ejt_C* 1eju_C* 1ejs_C* 1ejr_C* 1krc_C 1krb_C* 1fwi_C*
1fwa_C* 1fwb_C* 1fwc_C* 1fwd_C* 1fwe_C* 1fwg_C* 1a5k_C
...
Length = 567
Score = 78.2 bits (192), Expect = 2e-15
Identities = 61/419 (14%), Positives = 115/419 (27%), Gaps = 55/419 (13%)
Query: 46 QCGIQSSSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNIN----------VGDDVKV 95
Q +++ +V+ AD+ V+DG + A+ N +G +V
Sbjct: 59 QMLAADCVDLVLTNALIVDHWGIVKADIGVKDGRIFAIGKAGNPDIQPNVTIPIGAATEV 118
Query: 96 LDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTA 155
+ A GK V GGID H H E SG + GGT
Sbjct: 119 IAAEGKIVTAGGIDTHIHWICPQQAEE---ALVSGVTTMVGGGTGPAAGTHATTCTPGPW 175
Query: 156 GFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDE 215
+ A + ++ G E G+ K + + D
Sbjct: 176 YISRMLQAADSLPVNIGLLGKGNVSQPDALREQV----AAGVIGLKIHEDWGATPAAID- 230
Query: 216 LLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRA 275
+ +H++ + + + + G EG A
Sbjct: 231 ---CALTVADEMDIQVALHSDTLNESGFVEDTLAAI------GGRTIHTFHTEGAGGGHA 281
Query: 276 IRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAA 335
+ P + + + + ++ + + +D
Sbjct: 282 PDIITACAHPNILPSSTNPTLPYTLNTIDEHLDMLMVCHHLDPDIAED------------ 329
Query: 336 KYVMSPPIRASGHNKALQAALA-TGILQLVGTDHCAFN----STQKAFGIDDFRKIPNGV 390
V R A + L G L +D A + + + K+ G
Sbjct: 330 --VAFAESRIRRETIAAEDVLHDLGAFSLTSSDSQAMGRVGEVILRTWQVAHRMKVQRGA 387
Query: 391 NGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNP 449
E + V Y+ + A + G+I VG AD+++++P
Sbjct: 388 LAEETGDN---------DNFRVKRYIAKYTINPALTHGIAHEVGSIEVGKLADLVVWSP 437
>2r8c_A Putative amidohydrolase; unknown source, sargasso SEA, structural
genomics, protein structure initiative, PSI; 2.31A
{Unidentified} SCOP: b.92.1.9 c.1.9.18 PDB: 3mkv_A*
Length = 426
Score = 70.1 bits (172), Expect = 4e-13
Identities = 20/89 (22%), Positives = 36/89 (40%), Gaps = 3/89 (3%)
Query: 51 SSSKILIKGGTVVNAHHQQI---ADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGG 107
S + L + G +++ H + ++ +EDG + V + V+D GK +MPG
Sbjct: 2 SLTTFLFRNGALLDPDHPDLLQGFEILIEDGFIREVSDKPIKSSNAHVIDVKGKTIMPGL 61
Query: 108 IDPHTHLAMEFMGSETIDDFFSGQAAALA 136
ID H H+ + + A
Sbjct: 62 IDLHVHVVAIEFNLPRVATLPNVLVTLRA 90
>1ra0_A Cytosine deaminase; alpha-beta barrel, hexamer, conformation
change, D314G mutant, hydrolase; 1.12A {Escherichia
coli} SCOP: b.92.1.2 c.1.9.5 PDB: 1r9x_A 1ra5_A 1r9y_A
1r9z_A 1rak_A 3r0d_A* 3o7u_A* 3rn6_A* 1k6w_A 1k70_A
3g77_A
Length = 430
Score = 70.0 bits (171), Expect = 6e-13
Identities = 67/475 (14%), Positives = 130/475 (27%), Gaps = 99/475 (20%)
Query: 49 IQSSSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINV-GDDVKVLDATGKFVMPGG 107
+ +++ I + + + ++++DG + A+ V LDA V+P
Sbjct: 4 MANNALQTIINARL--PGEEGLWQIHLQDGKISAIDAQSGVMPITENSLDAEQGLVIPPF 61
Query: 108 IDPHTHLAMEFMGSE-----------------------TIDDFFSGQAAAL----AGGTT 140
++PH HL + T DD L A G
Sbjct: 62 VEPHIHLDTTQTAGQPNWNQSGTLFEGIERWAERKALLTHDDVKQRAWQTLKWQIANGIQ 121
Query: 141 M---HIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGI 197
H+D +L A E ++ A + + + G
Sbjct: 122 HVRTHVDVSDATLTALKAMLEVKQEVAPWIDLQIVAFPQEGILSYPNGEALLEEALRLGA 181
Query: 198 NSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHA-ENGDAVFEGQKRMIELGITGP 256
+ ++ + E L + F + L VH E D + + L
Sbjct: 182 DVVGAIPHFEFTREYGVESLHKTFALAQKYDRLIDVHCDEIDDEQSRFVETVAALAHHEG 241
Query: 257 EGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVV 316
G + H +M + R++ +
Sbjct: 242 MGA-------------------------RVTASHTTAMHSYNG--AYTSRLFRLLKMSGI 274
Query: 317 SGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQK 376
+ + + ++ P R K + + GI G D
Sbjct: 275 NFVANPLVNIHL-----QGRFDTYPKRRGITRVKEMLES---GINVCFGHDGVFDPWY-- 324
Query: 377 AFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAI 436
P G + + +H+ G + D + L + AR N+ + I
Sbjct: 325 ----------PLGTANMLQVLHMGLHVCQLMGYGQINDGLNLITHHSARTLNL--QDYGI 372
Query: 437 LVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWEN 491
G+ A++II + F+ R R ++ GG+V+
Sbjct: 373 AAGNSANLIILPAENGFDALRRQVPVR----------------YSVRGGKVIAST 411
>2qs8_A XAA-Pro dipeptidase; amidohydrolase, TIM barrel, protein structure
initiative, PSI-2, NYSGXRC, structural genomics; 2.33A
{Alteromonas macleodii} SCOP: b.92.1.9 c.1.9.18
Length = 418
Score = 68.5 bits (168), Expect = 2e-12
Identities = 20/110 (18%), Positives = 41/110 (37%), Gaps = 12/110 (10%)
Query: 52 SSKILIKGGTVVNAHHQQI---ADVYVEDGIVVAVQPN-INVGDDVKVLDATGKFVMPGG 107
SK LI G +++ Q+ + ++ I+ ++ I+ D +D V+PG
Sbjct: 6 DSKTLIHAGKLIDGKSDQVQSRISIVIDGNIISDIKKGFISSNDFEDYIDLRDHTVLPGL 65
Query: 108 IDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGF 157
+D H H E+ + A+ ++ + +GF
Sbjct: 66 MDMHVHFGQEYQSKAQAPIKVEREMQAILATQHAYV--------TFKSGF 107
>3feq_A Putative amidohydrolase; unknown source, sargasso SEA, structural
genomics, protein structure initiative, PSI; 2.63A
{Unidentified} PDB: 3lwy_A* 3n2c_A*
Length = 423
Score = 67.4 bits (165), Expect = 3e-12
Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Query: 51 SSSKILIKGGTVVNAHHQQI---ADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGG 107
S + +++GG V++ + V ++ +V V + + +D GK VMPG
Sbjct: 2 SLTITVLQGGNVLDLERGVLLEHHHVVIDGERIVEVTDRPVDLPNAQAIDVRGKTVMPGF 61
Query: 108 IDPHTHLAME 117
ID H H+
Sbjct: 62 IDCHVHVLAS 71
>2qt3_A N-isopropylammelide isopropyl amidohydrolase; N-isopropylammelide
isopropylaminohydrolase ATZC, structural genomics,
NYSGXRC, target 9364B; 2.24A {Pseudomonas SP}
Length = 403
Score = 66.9 bits (163), Expect = 4e-12
Identities = 16/84 (19%), Positives = 33/84 (39%), Gaps = 3/84 (3%)
Query: 55 ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHL 114
++I+ + + + D+ + ++ ++ I G +DA G V PG +D HTH+
Sbjct: 7 LIIRNAYL--SEKDSVYDIGIVGDRIIKIEAKIE-GTVKDEIDAKGNLVSPGFVDAHTHM 63
Query: 115 AMEFMGSETIDDFFSGQAAALAGG 138
F + F +
Sbjct: 64 DKSFTSTGERLPKFWSRPYTRDAA 87
Score = 32.2 bits (73), Expect = 0.44
Identities = 12/71 (16%), Positives = 24/71 (33%), Gaps = 17/71 (23%)
Query: 424 ARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIA 483
AR+ + + I VG AD+++ N S I
Sbjct: 348 ARVLGI-EKNYGIEVGKKADLVVLNSLSPQWAIIDQAKRL----------------CVIK 390
Query: 484 GGRVVWENDEL 494
GR++ +++ +
Sbjct: 391 NGRIIVKDEVI 401
>3h4u_A Amidohydrolase; signature of Zn ligands, structural genomics,
NYSGXRC, target 9236E, PSI-2, protein structure
initiative; 2.20A {Unidentified} PDB: 3hpa_A
Length = 479
Score = 66.5 bits (163), Expect = 8e-12
Identities = 45/269 (16%), Positives = 86/269 (31%), Gaps = 68/269 (25%)
Query: 51 SSSKILIKGGTVV---NAHHQQI--ADVYVEDGIVVAVQPNINVGDDV-KVLDATGKFVM 104
+L+K V+ + +++ A +Y+ED +VAV P+ + + +VLD G V+
Sbjct: 27 RPKTLLVKHADVLVTMDDTRRELRDAGLYIEDNRIVAVGPSAELPETADEVLDLRGHLVI 86
Query: 105 PGGIDPHTHLAMEFM-GSETIDDF-------------------FSGQAAALA------GG 138
PG ++ H H+ + + A G
Sbjct: 87 PGLVNTHHHMYQSLTRAVPAAQNAELFGWLTNLYKIWAHLTPEMIEVSTLTAMAELLQSG 146
Query: 139 TTMHID--FVIPINGSLTAGFEAYEK-----KAKNSCMDYGFHMAITKWDEVVSDEMEVM 191
T D ++ P L A ++ A M G D VV E +++
Sbjct: 147 CTTSSDHLYIYPNGSRLDDSIGAAQRIGMRFHASRGAMSVGQRDGGLPPDSVVEREPDIL 206
Query: 192 VKEKGINSFKFFMAYKGS---------------FMINDELLIEGFKRCKSLGALAMVH-A 235
+ + Y F ++ +L+ + + G H A
Sbjct: 207 RD-----TQRLIETYHDEGRYAMLRVVVAPCSPFSVSRDLMRDAAVLAREYGVSLHTHLA 261
Query: 236 ENGDAVFEGQKR--------MIELGITGP 256
EN + + +++ +LG G
Sbjct: 262 ENVNDIAYSREKFGMTPAEYAEDLGWVGH 290
Score = 31.8 bits (73), Expect = 0.58
Identities = 14/63 (22%), Positives = 21/63 (33%), Gaps = 9/63 (14%)
Query: 434 GAILVGSDADIIIFNPNSSFEITARSHH--SRLDTNVYEGRRVKGKVEVTIAGGRVVWEN 491
GA+ G AD F+ H + L V+ + T+ G+VV
Sbjct: 400 GALKPGMAADFAAFDLR-QPLFAGALHDPVAAL---VFCAP---SQTAYTVVNGKVVVRE 452
Query: 492 DEL 494
L
Sbjct: 453 GRL 455
>3ls9_A Triazine hydrolase; atrazine chlorohydrolase TRZN; 1.40A
{Arthrobacter aurescens} PDB: 3lsc_A* 3lsb_A*
Length = 456
Score = 64.9 bits (159), Expect = 2e-11
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
Query: 55 ILIKGGTVV---NAHHQQI--ADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGID 109
ILI+G T V + +++ AD+ ++ +VAV +++ + +D G +PG I+
Sbjct: 2 ILIRGLTRVITFDDQERELEDADILIDGPKIVAVGKDLSDRSVSRTIDGRGMIALPGLIN 61
Query: 110 PHTHLAMEFM-GSETIDD 126
H HL M ++
Sbjct: 62 SHQHLYEGAMRAIPQLER 79
Score = 32.2 bits (74), Expect = 0.48
Identities = 11/61 (18%), Positives = 22/61 (36%), Gaps = 5/61 (8%)
Query: 434 GAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDE 493
G + G ADI + + + H + G + + + G+V+ EN+
Sbjct: 381 GVLEEGRAADIACWRLDG---VDRVGVHDPAIGLIMTGLS--DRASLVVVNGQVLVENER 435
Query: 494 L 494
Sbjct: 436 P 436
>3be7_A Zn-dependent arginine carboxypeptidase; unknown source,
amidohydrolase, sargasso SEA, structural GEN protein
structure initiative, PSI; HET: ARG; 2.30A
{Unidentified} SCOP: b.92.1.9 c.1.9.18 PDB: 3dug_A*
Length = 408
Score = 63.5 bits (155), Expect = 5e-11
Identities = 15/69 (21%), Positives = 29/69 (42%), Gaps = 4/69 (5%)
Query: 51 SSSKILIKGGTVVNAHHQQI--ADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGI 108
+S LIK ++ +I AD+ + +G + + D V+ ++PG +
Sbjct: 4 TSEDFLIKSKGYLDIQTGEIIKADLLIRNGKIAEIGKI--NTKDATVISIPDLILIPGLM 61
Query: 109 DPHTHLAME 117
D H H+
Sbjct: 62 DSHVHIVGN 70
>3gnh_A L-lysine, L-arginine carboxypeptidase CC2672; N-methyl phosphonate
derivative of L- arginine, hydrolase; HET: KCX M3R;
1.70A {Caulobacter crescentus CB15} PDB: 3mtw_A*
Length = 403
Score = 63.1 bits (154), Expect = 7e-11
Identities = 14/70 (20%), Positives = 26/70 (37%), Gaps = 4/70 (5%)
Query: 52 SSKILIKGGTVVNAHHQQI---ADVYVEDGIVVAVQPN-INVGDDVKVLDATGKFVMPGG 107
+ + +++ + V V DG + ++ V +D G ++PG
Sbjct: 1 AEIKAVSAARLLDVASGKYVDNPLVIVTDGRITSIGKKGDAVPAGATAVDLPGVTLLPGL 60
Query: 108 IDPHTHLAME 117
ID H HL
Sbjct: 61 IDMHVHLDSL 70
>1p1m_A Hypothetical protein TM0936; putative metal dependent hydrolase,
PSI, protein structure initiative; 1.50A {Thermotoga
maritima} SCOP: b.92.1.4 c.1.9.9 PDB: 2plm_A* 1j6p_A
Length = 406
Score = 61.8 bits (151), Expect = 2e-10
Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 6/67 (8%)
Query: 55 ILIKGGTVVNAHHQQI--ADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHT 112
++I ++ + V +E+G + V G+ LD +GK VMP + HT
Sbjct: 1 MIIGNCLILKDFSSEPFWGAVEIENGTIKRVLQ----GEVKVDLDLSGKLVMPALFNTHT 56
Query: 113 HLAMEFM 119
H M +
Sbjct: 57 HAPMTLL 63
Score = 31.8 bits (73), Expect = 0.67
Identities = 11/61 (18%), Positives = 26/61 (42%), Gaps = 6/61 (9%)
Query: 434 GAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDE 493
G I G +AD+++ + + + + V+ G+V T+ G+ ++ + E
Sbjct: 330 GKIEEGWNADLVVIDLDL---PEMFPVQNIKNHLVHAFS---GEVFATMVAGKWIYFDGE 383
Query: 494 L 494
Sbjct: 384 Y 384
>2paj_A Putative cytosine/guanine deaminase; NYSGXRC, PSI-II,
amidohydrolase, sargasso SEA, enviro sample, structural
genomics; 2.70A {Unidentified} SCOP: b.92.1.4 c.1.9.9
Length = 492
Score = 61.5 bits (150), Expect = 3e-10
Identities = 13/86 (15%), Positives = 28/86 (32%), Gaps = 11/86 (12%)
Query: 51 SSSKILIKGGTVVNAHHQQI---------ADVYVEDGIVVAVQPNINVGDDVKVLDATGK 101
+ LI+ + + D+ + + A+ + ++DAT
Sbjct: 8 TQPSTLIRNAAAIMTGGRGTADDPSRVPGPDIRIVGDTIDAIGALAPRPGE-TIVDATDC 66
Query: 102 FVMPGGIDPHTHLAMEFM-GSETIDD 126
+ P ++ H HL + G D
Sbjct: 67 VIYPAWVNTHHHLFQSLLKGEPAGLD 92
Score = 31.1 bits (71), Expect = 0.88
Identities = 14/61 (22%), Positives = 22/61 (36%), Gaps = 5/61 (8%)
Query: 434 GAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDE 493
G + VG ADI ++ + H V G R V + G+ V +D
Sbjct: 404 GKVAVGYAADIAVYRLDD---PRYFGLHDPAIGPVASGGR--PSVMALFSAGKRVVVDDL 458
Query: 494 L 494
+
Sbjct: 459 I 459
>4f0r_A 5-methylthioadenosine/S-adenosylhomocysteine DEAM; structural
genomics, PSI-biology; HET: MSE MTA; 1.80A
{Chromobacterium violaceum} PDB: 4f0s_A*
Length = 447
Score = 61.0 bits (149), Expect = 4e-10
Identities = 16/76 (21%), Positives = 34/76 (44%), Gaps = 6/76 (7%)
Query: 50 QSSSKILIKGGTVV--NAHHQQIAD--VYVEDGIVVAVQPNINVG--DDVKVLDATGKFV 103
QS + +I ++ + + + + + DG + A+ P + + + L+ +
Sbjct: 3 QSRYEKIISARWIITVETDGEVLENHAIAIRDGKIAAIIPAADAAGLEADERLELPDHVL 62
Query: 104 MPGGIDPHTHLAMEFM 119
MPG I+ H H AM +
Sbjct: 63 MPGLINLHGHSAMSLL 78
Score = 30.2 bits (69), Expect = 1.8
Identities = 15/71 (21%), Positives = 26/71 (36%), Gaps = 5/71 (7%)
Query: 424 ARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIA 483
AR + + G++ VG AD+I + + + VY R +V
Sbjct: 352 ARALGIADKVGSVKVGKQADLIALDLAQ---LETAPAFDPISHVVYAAGR--EQVSHVWV 406
Query: 484 GGRVVWENDEL 494
GR + +L
Sbjct: 407 KGRALMRERKL 417
>4dyk_A Amidohydrolase; adenosine deaminase, nysgrc, structural GENO
PSI-biology, NEW YORK structural genomics research
consorti hydrolase; 2.00A {Pseudomonas aeruginosa}
Length = 451
Score = 60.6 bits (148), Expect = 4e-10
Identities = 13/68 (19%), Positives = 26/68 (38%), Gaps = 6/68 (8%)
Query: 55 ILIKGGTVV--NAHHQQI--ADVYVEDGIVVAVQPNINVG--DDVKVLDATGKFVMPGGI 108
+L+ +V + + + DG + V P ++ + G + PG +
Sbjct: 10 LLLLPTWIVPVEPAGVVLRDHALGIRDGQIALVAPREQAMRHGATEIRELPGMLLAPGLV 69
Query: 109 DPHTHLAM 116
+ H H AM
Sbjct: 70 NAHGHSAM 77
Score = 29.8 bits (68), Expect = 2.6
Identities = 14/71 (19%), Positives = 29/71 (40%), Gaps = 5/71 (7%)
Query: 424 ARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIA 483
AR + G++ G AD++ F+ + + + + + +Y R V
Sbjct: 354 ARALGLERLIGSLEAGKAADLVAFDLSG---LAQQPVYDPVSQLIYASGR--DCVRHVWV 408
Query: 484 GGRVVWENDEL 494
GGR + ++ L
Sbjct: 409 GGRQLLDDGRL 419
>4dzh_A Amidohydrolase; adenosine deaminase, nysgrc, structural GENO YORK
structural genomics research consortium; 1.55A
{Xanthomonas campestris PV}
Length = 472
Score = 60.7 bits (148), Expect = 5e-10
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 7/72 (9%)
Query: 55 ILIKGGTVV--NAHHQQIAD--VYVEDGIVVAVQPNINV---GDDVKVLDATGKFVMPGG 107
+LI+ G VV H + D V V +G++VAV P + + + +MPG
Sbjct: 16 LLIEAGYVVPIEPHAVVLEDHAVAVSNGVIVAVLPTADARVRFAPARTVSRPDAALMPGL 75
Query: 108 IDPHTHLAMEFM 119
++ HTH M +
Sbjct: 76 VNAHTHNPMTLL 87
Score = 29.5 bits (67), Expect = 3.2
Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 5/71 (7%)
Query: 424 ARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIA 483
AR R G+I VG AD++ + ++ + + H L +Y R +V
Sbjct: 361 ARALGFGDRIGSIEVGKQADLVCVDLSA---LETQPLHHVLSQLIYAAGR--HQVTDVWI 415
Query: 484 GGRVVWENDEL 494
G+ EL
Sbjct: 416 AGKPKLVQREL 426
>3gip_A N-acyl-D-glutamate deacylase; amidohydrolase family, hydrolase;
1.50A {Bordetella bronchiseptica} PDB: 3giq_A*
Length = 480
Score = 59.2 bits (143), Expect = 1e-09
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 55 ILIKGGTVVN--AHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHT 112
I GG +++ ++ AD+ V DG + A+ DA+GK V PG ID H
Sbjct: 9 FKITGGWIIDGTGAPRRRADLGVRDGRIAAIGELGAHPAR-HAWDASGKIVAPGFIDVHG 67
Query: 113 H 113
H
Sbjct: 68 H 68
Score = 46.5 bits (110), Expect = 2e-05
Identities = 17/94 (18%), Positives = 37/94 (39%), Gaps = 11/94 (11%)
Query: 406 ESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLD 465
E+ +++ V + AR+F +G + G+ AD+++F+P+ + R+
Sbjct: 391 EARLMTLEQAVARMTALPARVFGF-AERGVLQPGAWADVVVFDPD---TVADRATWDEPT 446
Query: 466 TNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPG 499
G + + G V+ + PG
Sbjct: 447 ------LASVG-IAGVLVNGAEVFPQPPADGRPG 473
>3lnp_A Amidohydrolase family protein OLEI01672_1_465; TIM barrel,
beta-fold, structural genomics, PSI-2, protein structure
initiative; HET: MSE; 2.10A {Oleispira antarctica}
Length = 468
Score = 58.4 bits (142), Expect = 3e-09
Identities = 22/97 (22%), Positives = 44/97 (45%), Gaps = 11/97 (11%)
Query: 31 SNNLFCDAGSEYGGPQCGIQSSSKILIKGGTVV--------NAHHQQIAD--VYVEDGIV 80
SN + D+ S Q ++ + + I ++ N + D + ++DGI+
Sbjct: 1 SNAMSKDSESNLAQRQSQPKAHADLRINSHWIIPIENTTDHNLVSNILIDHCLLIKDGII 60
Query: 81 VAVQPNINV-GDDVKVLDATGKFVMPGGIDPHTHLAM 116
+A++P + + LD + +MPG ++ H H AM
Sbjct: 61 LAIEPQSSCQIPATETLDLGQQVLMPGWVNAHGHAAM 97
Score = 30.3 bits (69), Expect = 1.8
Identities = 14/61 (22%), Positives = 27/61 (44%), Gaps = 5/61 (8%)
Query: 434 GAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDE 493
G++ G ADI + N+ ++++ + VY + +V GR + +N E
Sbjct: 389 GSLKPGKAADIQAIDLNT---LSSQPVFDPVSHMVYCTKS--TQVSHVWVNGRCLLKNGE 443
Query: 494 L 494
L
Sbjct: 444 L 444
>1rk6_A D-aminoacylase; TIM barrel, beta barrel, insertion, hydrolase;
1.43A {Alcaligenes faecalis} SCOP: b.92.1.6 b.92.1.6
c.1.9.11 PDB: 1rjp_A 1v51_A 1rjq_A 1rjr_A 1rk5_A 1v4y_A
1m7j_A
Length = 496
Score = 58.1 bits (140), Expect = 3e-09
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 55 ILIKGGTVVN--AHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHT 112
++ GGTV++ ++ADV V + AV ++ D GK V PG ID HT
Sbjct: 23 YILSGGTVIDGTNAPGRLADVGVRGDRIAAVGDLSASSARRRI-DVAGKVVSPGFIDSHT 81
Query: 113 H 113
H
Sbjct: 82 H 82
Score = 42.7 bits (100), Expect = 2e-04
Identities = 17/95 (17%), Positives = 31/95 (32%), Gaps = 12/95 (12%)
Query: 406 ESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLD 465
+ G + V + A F + +G + G AD+++F+P + +
Sbjct: 405 DLGLFPLETAVWKMTGLTAAKFGL-AERGQVQPGYYADLVVFDPA---TVADSATFEHPT 460
Query: 466 TNVYEGRRVKGKVEVTIAGGRVVWENDEL-NVVPG 499
R G + G VWE+ G
Sbjct: 461 ------ERAAG-IHSVYVNGAAVWEDQSFTGQHAG 488
>2puz_A Imidazolonepropionase; NYSGXRC, PSI-2, N-formimino-L- glutamate,
product-bound, structural genomics, protein STRU
initiative; HET: NIG; 1.83A {Agrobacterium tumefaciens
str} SCOP: b.92.1.10 c.1.9.17 PDB: 2gok_A
Length = 419
Score = 57.2 bits (138), Expect = 6e-09
Identities = 16/77 (20%), Positives = 29/77 (37%), Gaps = 11/77 (14%)
Query: 51 SSSKILIKGGTVV--NAHHQQI-----ADVYVEDGIVVAVQPNINV----GDDVKVLDAT 99
++ L + + N I A + V +G + P ++ + D
Sbjct: 13 GNATALWRNAQLATLNPAMDGIGAVENAVIAVRNGRIAFAGPESDLPDDLSTADETTDCG 72
Query: 100 GKFVMPGGIDPHTHLAM 116
G+++ P ID HTHL
Sbjct: 73 GRWITPALIDCHTHLVF 89
Score = 33.7 bits (77), Expect = 0.16
Identities = 11/51 (21%), Positives = 23/51 (45%)
Query: 424 ARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRV 474
A+ + G + G AD I++ E+ R + L +++G++V
Sbjct: 367 AKALGLLAETGTLEAGKSADFAIWDIERPAELVYRIGFNPLHARIFKGQKV 417
>3iv8_A N-acetylglucosamine-6-phosphate deacetylase; IDP01334, fruct
phosphate, carbohydrate metabolism, hydrolase; HET: F6P;
2.53A {Vibrio cholerae} PDB: 3egj_A*
Length = 381
Score = 56.8 bits (138), Expect = 6e-09
Identities = 18/93 (19%), Positives = 35/93 (37%), Gaps = 3/93 (3%)
Query: 51 SSSKILIKGGTVVNAHHQQI-ADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGID 109
S++ + + + + V + + AV P ++ ++ V+D G + PG ID
Sbjct: 1 SNAMYALTNCKIYTGNDVLVKHAVIINGDKIEAVCPIESLPSEMNVVDLNGANLSPGFID 60
Query: 110 PHTHLAM--EFMGSETIDDFFSGQAAALAGGTT 140
+ F T + + A L G T
Sbjct: 61 LQLNGCGGVMFNDEITAETIDTMHKANLKSGCT 93
Score = 44.9 bits (107), Expect = 5e-05
Identities = 11/48 (22%), Positives = 24/48 (50%)
Query: 403 TMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPN 450
VE I++ + +R+ + A+ V + G I G A++ +F+ +
Sbjct: 319 NTVEHVGIALDEALRMATLYPAKAIGVDEKLGRIKKGMIANLTVFDRD 366
>2p9b_A Possible prolidase; protein structure initiative II, PSI-2,
amidohydrolase, structural genomics; 1.70A
{Bifidobacterium longum NCC2705} SCOP: b.92.1.10
c.1.9.17
Length = 458
Score = 56.7 bits (137), Expect = 9e-09
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 7/73 (9%)
Query: 52 SSKILIKGGTVVNAH-----HQQIADVYVEDGIVVAVQPN--INVGDDVKVLDATGKFVM 104
+ T+V + + V DG + V P+ ++ + LD TGK VM
Sbjct: 11 VEPFALAHATIVTGDKAGTILRNMTIVVGADGRIEQVAPSIETSIPAEYHYLDGTGKIVM 70
Query: 105 PGGIDPHTHLAME 117
PG I+ HTHL +
Sbjct: 71 PGLINAHTHLFSQ 83
>2bb0_A Imidazolonepropionase; TIM barrel, hydrolase; 2.00A {Bacillus
subtilis} SCOP: b.92.1.10 c.1.9.17 PDB: 2g3f_A
Length = 421
Score = 56.3 bits (136), Expect = 1e-08
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 71 ADVYVEDGIVVAVQPNINV--GDDVKVLDATGKFVMPGGIDPHTHLAM 116
A V + + +V + +++D +G+ V PG +DPHTHL
Sbjct: 38 AVVGIHEQKIVFAGQKGAEAGYEADEIIDCSGRLVTPGLVDPHTHLVF 85
Score = 28.9 bits (65), Expect = 4.2
Identities = 10/61 (16%), Positives = 18/61 (29%), Gaps = 14/61 (22%)
Query: 432 RKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWEN 491
G + G AD++I+ + I Y V + G +V
Sbjct: 370 EAGQLKAGRSADLVIWQAPNYMYI------------PYHYGV--NHVHQVMKNGTIVVNR 415
Query: 492 D 492
+
Sbjct: 416 E 416
>2q09_A Imidazolonepropionase; 9252H, NYSGXRC, 3-(2, 5-dioxo-imidazo
4YL)-propionic acid, PSI-2 community, structural
genomics, structure initiative; HET: DI6; 1.97A
{Unidentified} SCOP: b.92.1.10 c.1.9.17 PDB: 2oof_A*
Length = 416
Score = 55.2 bits (133), Expect = 2e-08
Identities = 18/74 (24%), Positives = 29/74 (39%), Gaps = 9/74 (12%)
Query: 52 SSKILIKGGTVV-----NAHHQQI--ADVYVEDGIVVAVQP--NINVGDDVKVLDATGKF 102
+ + + T A + + + V +G + A+ P ++ D GK
Sbjct: 4 NCERVWLNVTPATLRSDLADYGLLEPHALGVHEGRIHALVPMQDLKGPYPAHWQDMKGKL 63
Query: 103 VMPGGIDPHTHLAM 116
V PG ID HTHL
Sbjct: 64 VTPGLIDCHTHLIF 77
Score = 32.1 bits (73), Expect = 0.40
Identities = 12/51 (23%), Positives = 21/51 (41%)
Query: 424 ARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRV 474
AR + G + VG AD +++N E++ +L + V G
Sbjct: 355 ARALGEQEQLGQLRVGMLADFLVWNCGHPAELSYLIGVDQLVSRVVNGEET 405
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 56.2 bits (135), Expect = 2e-08
Identities = 94/561 (16%), Positives = 166/561 (29%), Gaps = 188/561 (33%)
Query: 2 IHSMASAFTHQLTSVAL---LLLLLYF-------PPISESNN--LF--CDAGS-----EY 42
IH++A+ + + + L+ Y P + +N LF G+ +
Sbjct: 101 IHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIF 160
Query: 43 GGPQCGIQSSSKI----LIKGGTVVNAHHQQIADVY---VEDGIVVAVQPNINVGDDVKV 95
GG Q ++ L + + Y V D I + + +
Sbjct: 161 GG-----QGNTDDYFEEL-----------RDLYQTYHVLVGDLIKFSAETLSELIRT--T 202
Query: 96 LDATGKFVMPGGIDPHTHLAMEFMGSETI--DDFFSGQAAALAGGTTMHIDFVIPINGSL 153
LDA F G++ L D+ + ++ P+ G +
Sbjct: 203 LDAEKVF--TQGLNILEWLE----NPSNTPDKDYLL--SIPIS----------CPLIG-V 243
Query: 154 TAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMV---KEKGINSFK--FFMAYKG 208
Y AK G + K S + V + SF A
Sbjct: 244 IQ-LAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITV 302
Query: 209 SFMINDELLIEGFKRCK------SLGALAMVH--AENGDAVFEGQKR-MIELGITGPEGH 259
F I G RC SL +++ EN EG M L I+
Sbjct: 303 LFFI-------GV-RCYEAYPNTSL-PPSILEDSLENN----EGVPSPM--LSISN---- 343
Query: 260 ALSRPPLLEGEATTRA-------IRLAEFVNTPL-YVV--HVMSMDAMEEIAKARKAG-- 307
L++ + + T + + ++ VN VV S+ + + KA
Sbjct: 344 -LTQEQVQDYVNKTNSHLPAGKQVEIS-LVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSG 401
Query: 308 ---------QRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALAT 358
+R + S L P+ + H+ L A
Sbjct: 402 LDQSRIPFSER---KLKFSNRFL--------------------PVASPFHSHLLVPASDL 438
Query: 359 GILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRL 418
I + + ++ +FN+ D +IP V+DT G D +R+
Sbjct: 439 -INKDLVKNNVSFNA-------KDI-QIP------------VYDT--FDGS----D-LRV 470
Query: 419 TSTECA-RIFNVYPRK----GAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRR 473
S + RI + R I+ F P + + +H ++ +G
Sbjct: 471 LSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNK------DGT- 523
Query: 474 VKGKVEVTIAGGRVVWENDEL 494
G V V +AG + +D+
Sbjct: 524 --G-VRVIVAGTLDINPDDDY 541
Score = 53.1 bits (127), Expect = 2e-07
Identities = 53/315 (16%), Positives = 87/315 (27%), Gaps = 109/315 (34%)
Query: 109 DPHTHLAMEFMGSETIDD-------FFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYE 161
D H F + + + F G+ + F ++G L E
Sbjct: 1650 DNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKT--EKIF 1707
Query: 162 KKAKNSCMDYGFHM-------------AITKWDEVVSDEM-EVMVKEKGINSFKFFMAYK 207
K+ Y F A+T ++ E + K KG+ A
Sbjct: 1708 KEINEHSTSYTFRSEKGLLSATQFTQPALT----LMEKAAFEDL-KSKGLIPADATFA-- 1760
Query: 208 GSFMINDELLIEGFKRCKSLG---ALAMVHAENG-----DA---VFEGQKRMIELGITGP 256
G SLG ALA + VF R
Sbjct: 1761 ------------GH----SLGEYAALA---SLADVMSIESLVEVVF---YR--------- 1789
Query: 257 EGHALSR-PPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAK--ARKAGQRVIGE 313
G + P E + + +A +N P V S +A++ + + ++ G V E
Sbjct: 1790 -GMTMQVAVPRDELGRSNYGM-IA--IN-PGRVAASFSQEALQYVVERVGKRTGWLV--E 1842
Query: 314 PV---VSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCA 370
V V YV A+G +AL T +L +
Sbjct: 1843 IVNYNVENQQ----------------YV------AAGDLRALDT--VTNVLNFIKLQKID 1878
Query: 371 FNSTQKAFGIDDFRK 385
QK+ +++
Sbjct: 1879 IIELQKSLSLEEVEG 1893
Score = 51.2 bits (122), Expect = 9e-07
Identities = 78/487 (16%), Positives = 151/487 (31%), Gaps = 154/487 (31%)
Query: 113 HLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYG 172
L +F+G + S G + L +E
Sbjct: 59 ELVGKFLG------YVSSLVEPSKVGQFDQV---------LNLCLTEFENC--------- 94
Query: 173 F------HMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKS 226
+ H K + ++ ++ ++ I ++ M K+ S
Sbjct: 95 YLEGNDIHALAAKLLQ--ENDTTLVKTKELIKNY-----ITARIMAKRPFD----KKSNS 143
Query: 227 LGALAMVHAENGD----AVFEGQKRMIELGITG---PEGHALSR-----PPLLEGEATTR 274
AL G+ A+F GQ G T E L L+
Sbjct: 144 --AL-FRAVGEGNAQLVAIFGGQ------GNTDDYFEE---LRDLYQTYHVLVGDLIKFS 191
Query: 275 AIRLAEFVNTPLYV--VHVMSMDAMEEIAKARKA-GQRVIGEPVVS----GLVLDDSWLW 327
A L+E + T L V ++ +E + + + +S G++ L
Sbjct: 192 AETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVI----QLA 247
Query: 328 HSDFVTAAKYVMSPP--IR-----ASGHNKALQAALATGILQLVGTDHCAFNSTQKA--- 377
H +V AK + P +R A+GH++ L A+A + + F S +KA
Sbjct: 248 H--YVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVA---IAETDSWESFFVSVRKAITV 302
Query: 378 -FGIDDFRKIPNGVNGIEERMHL-VWDTMV----ESGQ------ISVTDYVRLTSTECAR 425
F I GV E + + +++ E+ + +S+++ + +
Sbjct: 303 LFFI--------GVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVN 354
Query: 426 IFNVY-PRKGAILVGSDADIIIFNPNSSFEIT--ARSHHSRLDTNVYEGRRVKGKVEVTI 482
N + P + +I + N + ++ +S + L+ + R+ K +
Sbjct: 355 KTNSHLPAGKQV------EISLVNGAKNLVVSGPPQSLY-GLNLTL---RKAKAPSGLDQ 404
Query: 483 AGGRVVWENDELNVVPGSGK--YIEMR------PFN--YL-------FHGLDKADAKYL- 524
+ R +P S + R PF+ L L K + +
Sbjct: 405 S--R----------IPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNA 452
Query: 525 SSLQAPV 531
+Q PV
Sbjct: 453 KDIQIPV 459
Score = 36.6 bits (84), Expect = 0.024
Identities = 50/297 (16%), Positives = 81/297 (27%), Gaps = 93/297 (31%)
Query: 292 MSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHS-DFVTAAKY-------VMSPPI 343
M MD + A+ +W+ D Y V++ P+
Sbjct: 1631 MGMDLYKTSKAAQD--------------------VWNRADNHFKDTYGFSILDIVINNPV 1670
Query: 344 RASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDT 403
+ H + + + ++ A G KI +N E + +
Sbjct: 1671 NLTIHFGGEKG-------KRIRENYSAMIFETIVDGKLKTEKIFKEIN--EHSTSYTFRS 1721
Query: 404 MVESGQISVTDY--VRLTSTECARIFNVYPRKGAI----------------LVGSDADII 445
E G +S T + LT E A F KG I L S AD++
Sbjct: 1722 --EKGLLSATQFTQPALTLMEKA-AFEDLKSKGLIPADATFAGHSLGEYAALA-SLADVM 1777
Query: 446 IFNPNSSFEITARSHHSR--LDTNVYEGRRVKGKVEVTIAG---GRVV--WENDELNVV- 497
S E R R G+ + GRV + + L V
Sbjct: 1778 ------SIESLVEVVFYRGMTMQVAVP-RDELGRSNYGMIAINPGRVAASFSQEALQYVV 1830
Query: 498 ----PGSGKYIEMRPFNY-----------LFHGLDKAD--AKYLSSLQAPVKRLKSS 537
+G +E NY LD ++ + + L+ S
Sbjct: 1831 ERVGKRTGWLVE--IVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKS 1885
>1yrr_A N-acetylglucosamine-6-phosphate deacetylase; (beta/alpha)8 barrel,
beta sandwich, hydrolase; 2.00A {Escherichia coli} SCOP:
b.92.1.5 c.1.9.10 PDB: 1ymy_A 2p50_A 2p53_A*
Length = 382
Score = 54.5 bits (132), Expect = 3e-08
Identities = 16/90 (17%), Positives = 33/90 (36%), Gaps = 6/90 (6%)
Query: 57 IKGGTVVNAHH-QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTH-- 113
+ G + H V + DG++ +V P + +++ G + PG ID +
Sbjct: 4 LTQGRIFTGHEFLDDHAVVIADGLIKSVCPVAELPPEIEQRSLNGAILSPGFIDVQLNGC 63
Query: 114 ---LAMEFMGSETIDDFFSGQAAALAGGTT 140
+ + +++ Q A G T
Sbjct: 64 GGVQFNDTAEAVSVETLEIMQKANEKSGCT 93
Score = 45.3 bits (108), Expect = 4e-05
Identities = 13/48 (27%), Positives = 24/48 (50%)
Query: 403 TMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPN 450
+VE I++ + +R+ + AR V R G + G A++ F P+
Sbjct: 319 NLVEHCGIALDEVLRMATLYPARAIGVEKRLGTLAAGKVANLTAFTPD 366
>2i9u_A Cytosine/guanine deaminase related protein; protein structure
initiative II (PSI-II), amidohydrol guanine deaminase;
HET: GUN; 2.05A {Clostridium acetobutylicum} SCOP:
b.92.1.4 c.1.9.9
Length = 439
Score = 53.0 bits (128), Expect = 1e-07
Identities = 13/74 (17%), Positives = 28/74 (37%), Gaps = 6/74 (8%)
Query: 49 IQSSSKILIKGGTVVNAHHQQI-----ADVYVEDGIVVAVQPNINVG-DDVKVLDATGKF 102
+ + + KG + + + + V DG + +V N+ ++D
Sbjct: 5 EKDINLKIFKGNLIFTKTSDKFTIMKDSYIVVIDGKIASVSSNLPDKYKGNPIIDFRNNI 64
Query: 103 VMPGGIDPHTHLAM 116
++PG D H H +
Sbjct: 65 IIPGMNDLHAHASQ 78
>2imr_A Hypothetical protein DR_0824; zinc, NYSGXRC, PSI2, structural
genomics, protein structure initiative; 1.78A
{Deinococcus radiodurans} SCOP: b.92.1.11 c.1.9.16
Length = 420
Score = 52.0 bits (125), Expect = 3e-07
Identities = 39/298 (13%), Positives = 84/298 (28%), Gaps = 56/298 (18%)
Query: 56 LIKGGTVVNAHHQQIAD--VYVEDGIVVAVQPNINV--GDDVKVLDATGKFVMPGGIDPH 111
L+ + + V V V A + + G + P ++ H
Sbjct: 40 LLTCDVLYTGMGGAQSPGGVVVVGETVAAAGHPDELRRQYPHAAEERAGAVIAPPPVNAH 99
Query: 112 THLAM--------EFMG--------SETIDDFFSGQAAA---LAGGTTMHIDFV------ 146
THL M + + + QA A G D V
Sbjct: 100 THLDMSAYEFQALPYFQWIPEVVIRGRHLRGVAAAQAGADTLTRLGAGGVGDIVWAPEVM 159
Query: 147 ------IPINGSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSF 200
++G+L + + +W + + + + ++
Sbjct: 160 DALLAREDLSGTLYFEVLNPFPDKADEVFAAA-RTHLERWRRLERPGLRLGL---SPHT- 214
Query: 201 KFFMAYKGSFMINDELLIEGFKRCKSLGALAMVH-AENGD---AVFEGQKRMIELGITGP 256
F ++ L+ G +H AE+ G + + +
Sbjct: 215 --------PFTVSHRLMRLLSDYAAGEGLPLQIHVAEHPTELEMFRTGGGPLWDNRMPAL 266
Query: 257 EGHALSRPPLLEGEATTRAIRLAE---FVNTPLYVVHVMSMDAMEEIAKARKAGQRVI 311
H L+ E +R + + +VH++++ ++IA+ +AG V+
Sbjct: 267 YPHTLAEVIGREPGPDLTPVRYLDELGVLAARPTLVHMVNVTP-DDIARVARAGCAVV 323
>2vhl_A N-acetylglucosamine-6-phosphate deacetylase; N-
acetyleglucosamine-6-phosphate, carbohydrate metabolism,
hydrolase; HET: GLP PGE; 2.05A {Bacillus subtilis}
Length = 396
Score = 51.9 bits (125), Expect = 3e-07
Identities = 18/92 (19%), Positives = 32/92 (34%), Gaps = 3/92 (3%)
Query: 52 SSKILIKGGTVVNAHHQ-QIADVYVEDGIVVAVQP-NINVGDDVKVLDATGKFVMPGGID 109
+ +LIK +V + + V + DG + V ++ ++PG ID
Sbjct: 2 AESLLIKDIAIVTENEVIKNGYVGINDGKISTVSTERPKEPYSKEIQAPADSVLLPGMID 61
Query: 110 PHTHLAMEFMGSETIDDFFSGQAAALAG-GTT 140
H H + ++ L GTT
Sbjct: 62 IHIHGGYGADTMDASFSTLDIMSSRLPEEGTT 93
Score = 48.8 bits (117), Expect = 2e-06
Identities = 22/93 (23%), Positives = 38/93 (40%), Gaps = 25/93 (26%)
Query: 403 TMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHS 462
M E S TD +TS A+ ++ RKG++ VG DAD++I + +
Sbjct: 327 HMREFTNCSWTDIANITSENAAKQLGIFDRKGSVTVGKDADLVIVSSD------------ 374
Query: 463 RLDTNVYEGRRVKGKVEVTIAGGRVVWENDELN 495
+V +TI G + + + E +
Sbjct: 375 -------------CEVILTICRGNIAFISKEAD 394
>3ggm_A Uncharacterized protein BT9727_2919; bacillus cereus group.,
structural genomics, PSI-2, protein structure
initiative; 2.00A {Bacillus thuringiensis
serovarkonkukian}
Length = 81
Score = 47.1 bits (113), Expect = 3e-07
Identities = 13/65 (20%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Query: 55 ILIKGGTV--VNAHHQQIADVYVEDGIVVAV---QPNINVGDDVKVLDATGKFVMPGGID 109
+++ G + ++ +++ + + DG++ AV + + + K +D K +PG D
Sbjct: 6 MILYNGKITTLDPSQPEVSAIAITDGLITAVGGDELLNSATEKTKKIDLKRKRAIPGLND 65
Query: 110 PHTHL 114
H H+
Sbjct: 66 SHIHV 70
>3icj_A Uncharacterized metal-dependent hydrolase; structural genomics,
amidohydrolase, PSI-2, protein structur initiative; HET:
KCX; 1.95A {Pyrococcus furiosus} PDB: 3etk_A* 3igh_X*
Length = 534
Score = 51.9 bits (125), Expect = 4e-07
Identities = 18/111 (16%), Positives = 37/111 (33%), Gaps = 14/111 (12%)
Query: 13 LTSVALLLLLLYFPPISESNNLFCDAGSEYGGPQCGIQSSSKILIKGGTV--VNAHHQQI 70
L S+ + + + + G + GT+ + +++
Sbjct: 3 LASLPISNFFTFNHQSTLFTKVKNFMG-------VKHIGDCMKALINGTIYTSFSPVKKV 55
Query: 71 ADVYVEDGIVVAV-----QPNINVGDDVKVLDATGKFVMPGGIDPHTHLAM 116
+ + + + V+ I +++D GKFVMP D H HL
Sbjct: 56 SGLVISNERVLYAGDSSTALRIAELAGGEIIDLKGKFVMPAFFDSHLHLDE 106
>3v7p_A Amidohydrolase family protein; iron binding site, enzyme functio
initiative, EFI; HET: TLA; 1.35A {Nitratiruptor SP}
Length = 427
Score = 51.1 bits (123), Expect = 5e-07
Identities = 15/66 (22%), Positives = 25/66 (37%), Gaps = 5/66 (7%)
Query: 55 ILIKGGTVVNAHHQQIADVYV-EDGIVVAVQPNINVGD---DVKVLDATGKFVMPGGIDP 110
+IK ++ I D V D + A+ N+ + V ++PG +P
Sbjct: 2 RIIKPFAILTPQ-TIIQDKAVAFDKKIEAIDTVENLIKKYPNAAVEHDENSLLLPGFANP 60
Query: 111 HTHLAM 116
H HL
Sbjct: 61 HLHLEF 66
Score = 31.5 bits (72), Expect = 0.75
Identities = 10/61 (16%), Positives = 16/61 (26%), Gaps = 8/61 (13%)
Query: 434 GAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDE 493
G I VG DAD+ + + + + K + G E
Sbjct: 356 GEIAVGKDADMQLIDLPEGL----TNVEDLYLHVILHT----TKPKKVYIQGEEHVREAE 407
Query: 494 L 494
Sbjct: 408 N 408
>2ood_A BLR3880 protein; PSI-II, PSI-2, guanine deaminase, guanine,
structural genomics, protein structure initiative; HET:
GUN; 2.62A {Bradyrhizobium japonicum} SCOP: b.92.1.4
c.1.9.9
Length = 475
Score = 49.3 bits (118), Expect = 2e-06
Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
Query: 71 ADVYVEDGIVVAVQPNINVGD---DVKVLDATGKFVMPGGIDPHTHLAM-EFMGS 121
+ V DG++ A P + V++ + ++PG ID H HL +G+
Sbjct: 36 GLMVVTDGVIKAFGPYEKIAAAHPGVEITHIKDRIIVPGFIDGHIHLPQTRVLGA 90
>4f0l_A Amidohydrolase; ssgcid, structural genomics, seattle structural
genomics CEN infectious disease; 2.05A {Brucella
melitensis biovar abortus}
Length = 458
Score = 47.7 bits (114), Expect = 7e-06
Identities = 9/49 (18%), Positives = 20/49 (40%), Gaps = 4/49 (8%)
Query: 71 ADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFM 119
+ + G++ +++ + G D D V+ G + H+H M
Sbjct: 29 VRIGIAGGVICSIETGVLAGPD----DERQSVVVAGMANLHSHAFQYGM 73
Score = 30.7 bits (70), Expect = 1.3
Identities = 10/61 (16%), Positives = 17/61 (27%), Gaps = 6/61 (9%)
Query: 434 GAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDE 493
+ G+ AD + + + LD ++ GR V G E
Sbjct: 385 DGLKKGASADFVSLDVER---LPHAKGDVVLDGWIFAGR---AHVCDVWVRGVKQVEGGR 438
Query: 494 L 494
Sbjct: 439 H 439
>1o12_A N-acetylglucosamine-6-phosphate deacetylase; structural genomics,
TM0814, JCSG, PSI, protein structure initiative; 2.50A
{Thermotoga maritima} SCOP: b.92.1.5 c.1.9.10
Length = 376
Score = 44.9 bits (107), Expect = 5e-05
Identities = 21/93 (22%), Positives = 39/93 (41%), Gaps = 14/93 (15%)
Query: 50 QSSSKILIKGGTVVNAHHQQI-ADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGI 108
++++ +V+ + DV +E+G +V V+ +MPG +
Sbjct: 8 HHHHHMIVEKVLIVDPIDGEFTGDVEIEEGKIVKVEKRE---------CIPRGVLMPGFV 58
Query: 109 DPHTHLAMEFMGSETIDDFFSGQAAALAG-GTT 140
DPH H +G++T++ FS L G T
Sbjct: 59 DPHIHGV---VGADTMNCDFSEMEEFLYSQGVT 88
Score = 39.1 bits (92), Expect = 0.003
Identities = 14/89 (15%), Positives = 31/89 (34%), Gaps = 26/89 (29%)
Query: 403 TMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHS 462
+ S+T+ +++S + +G I G+ AD+++ + +
Sbjct: 313 NFRKFTGCSITELAKVSSYNSCVELGLD-DRGRIAEGTRADLVLLDED------------ 359
Query: 463 RLDTNVYEGRRVKGKVEVTIAGGRVVWEN 491
V +TI G VV+ +
Sbjct: 360 -------------LNVVMTIKEGEVVFRS 375
>3mdu_A N-formimino-L-glutamate iminohydrolase; amonohydralase family,
N-formimino-L-glutamate iminohydrolas
guanidino-L-glutamate; HET: NGQ; 1.40A {Pseudomonas
aeruginosa} PDB: 3mdw_A*
Length = 453
Score = 41.9 bits (99), Expect = 4e-04
Identities = 13/64 (20%), Positives = 23/64 (35%), Gaps = 9/64 (14%)
Query: 56 LIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLA 115
L+ G N DG++ ++P + + G V+PG + H+H
Sbjct: 10 LLPEGWARNV-----RFEISADGVLAEIRP----DANADGAERLGGAVLPGMPNLHSHAF 60
Query: 116 MEFM 119
M
Sbjct: 61 QRAM 64
Score = 33.0 bits (76), Expect = 0.23
Identities = 12/61 (19%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Query: 434 GAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDE 493
G++ VG AD+++ + N + + + L+ ++ G +V + GR V +
Sbjct: 377 GSLAVGRRADLLVLDGN-DPYLASAEGDALLNRWLFAGGD--RQVRDVMVAGRWVVRDGR 433
Query: 494 L 494
Sbjct: 434 H 434
>3la4_A Urease; JACK bean, hydrolase, ME binding, nickel; HET: CME KCX;
2.05A {Canavalia ensiformis}
Length = 840
Score = 40.6 bits (95), Expect = 0.001
Identities = 22/95 (23%), Positives = 38/95 (40%), Gaps = 24/95 (25%)
Query: 71 ADVYVEDGIVVA------------VQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEF 118
AD+ ++DG++ + V N+ +G + +V+ G V G ID H H
Sbjct: 355 ADIGIKDGLIASIGKAGNPDIMNGVFSNMIIGANTEVIAGEGLIVTAGAIDCHVHYICPQ 414
Query: 119 MGSETIDDFFSGQAAALAGG-TTMHIDFVIPINGS 152
+ E A++ G TT+ P G+
Sbjct: 415 LVYE-----------AISSGITTLVGGGTGPAAGT 438
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 40.2 bits (93), Expect = 0.002
Identities = 71/577 (12%), Positives = 151/577 (26%), Gaps = 215/577 (37%)
Query: 66 HHQQIADV------YVEDGIVVAVQPNINVGD-DVK-VLDATGKFVMPGGID-----PHT 112
HH D Y I+ + V + D K V D + ID
Sbjct: 2 HHHHHMDFETGEHQYQYKDILSVFEDAF-VDNFDCKDVQDMPKSILSKEEIDHIIMSKDA 60
Query: 113 HLAMEFM-------GSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGF--EAYEKK 163
+ E + F + I++ F + +
Sbjct: 61 VSGTLRLFWTLLSKQEEMVQKFV---------EEVLRINY----------KFLMSPIKTE 101
Query: 164 AKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMI---NDELLIEG 220
+ M M I + D + +D +V K ++ + ++ + + + +LI+G
Sbjct: 102 QRQPSMMT--RMYIEQRDRLYND-NQVFAKYN-VSRLQPYLKLRQALLELRPAKNVLIDG 157
Query: 221 FKRC-KS-LGALAM----VHAENGDAVF---EGQKRMIELGIT---------GPEGHAL- 261
K+ + V + +F E + P +
Sbjct: 158 VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRS 217
Query: 262 ---SRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSG 318
S L RL + P + +
Sbjct: 218 DHSSNIKLRIHSIQAELRRL--LKSKP----YENCL------------------------ 247
Query: 319 LVLDD---SWLWHS-----------------DFVTA------------------------ 334
LVL + + W++ DF++A
Sbjct: 248 LVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL 307
Query: 335 AKYV-MSP---PIRASGHNKALQAALATGI---------LQLVGTDHCAFNSTQKAFGID 381
KY+ P P N + +A I + V D + ++ ++
Sbjct: 308 LKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCD--KLTTIIESS-LN 364
Query: 382 -----DFRK-------IPNGVNGI-EERMHLVWDTMVESGQISVTDYVRLTSTECARIFN 428
++RK P + I + L+W +++S + V + +
Sbjct: 365 VLEPAEYRKMFDRLSVFPPSAH-IPTILLSLIWFDVIKSDVMVVVN-------KL----- 411
Query: 429 VYPRKGAILVGSDADIIIFNPNSSFEITA-----RSHHSRLDTNVYEGRRVKGKVEVTIA 483
K +++ + I P+ E+ + H + + Y +
Sbjct: 412 ---HKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSI-VDHYNIPK---------- 457
Query: 484 GGRVVWENDELNVVPGSGKYIEMRPFNYLFHGLDKAD 520
+++D+L Y ++++ H L +
Sbjct: 458 ----TFDSDDLIPPYLDQ-YF----YSHIGHHLKNIE 485
Score = 39.1 bits (90), Expect = 0.004
Identities = 34/235 (14%), Positives = 68/235 (28%), Gaps = 86/235 (36%)
Query: 180 WDEVVSDEMEVMVKEKGINSFKFFMAYK----GSFMINDELLIEGFKRCKSLGALAMVHA 235
W +V+ ++ V+V + K+ + K + I + +E + ++ AL H
Sbjct: 396 WFDVIKSDVMVVVNK----LHKYSLVEKQPKESTISIPS-IYLELKVKLENEYAL---H- 446
Query: 236 ENGDAVFEGQKRMIE--LGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVV---- 289
+ +++ + L PP L+ Y
Sbjct: 447 ----------RSIVDHYNIPKTFDSDDLI-PPYLDQ-----------------YFYSHIG 478
Query: 290 -HVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGH 348
H+ +++ E + R + LD +L K IR
Sbjct: 479 HHLKNIEHPERMTLFRM-------------VFLDFRFL-------EQK------IRHDST 512
Query: 349 NKALQAALATGILQLVG-----TDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMH 398
++ + QL D+ + I DF + IEE +
Sbjct: 513 AWNASGSILNTLQQLKFYKPYICDNDPKYE-RLVNAILDF------LPKIEENLI 560
>4aql_A Guanine deaminase; hydrolase, purine metabolism; HET: TXC; 1.99A
{Homo sapiens} PDB: 2uz9_A* 3e0l_A
Length = 476
Score = 38.1 bits (89), Expect = 0.006
Identities = 10/61 (16%), Positives = 25/61 (40%), Gaps = 3/61 (4%)
Query: 57 IKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLD-ATGKFVMPGGIDPHTHLA 115
++ + + +I V++E+ ++ + + +F MPG +D H H +
Sbjct: 51 LRDHLLGVSDSGKI--VFLEEASQQEKLAKEWCFKPCEIRELSHHEFFMPGLVDTHIHAS 108
Query: 116 M 116
Sbjct: 109 Q 109
>3dlo_A Universal stress protein; unknown function, structural genomics,
PSI-2, protein struct initiative, midwest center for
structural genomics; HET: MSE; 1.97A {Archaeoglobus
fulgidus} PDB: 3qtb_A*
Length = 155
Score = 30.8 bits (70), Expect = 0.63
Identities = 10/43 (23%), Positives = 16/43 (37%), Gaps = 3/43 (6%)
Query: 271 ATTRAIRLAEFVNTPLYVVHVMSMDAM---EEIAKARKAGQRV 310
A A P+YVVH + E+I +A++
Sbjct: 41 VLRFAAEEARLRGVPVYVVHSLPGGGRTKDEDIIEAKETLSWA 83
>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent
methyltransferase fold; 2.00A {Escherichia coli K12}
Length = 396
Score = 31.2 bits (71), Expect = 0.82
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Query: 75 VEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLA---MEFMGSETID-DFF 128
V G V ++ ++G+ + ++D GK++ G P + + F SE+ID FF
Sbjct: 22 VFSGAVARMEGKASLGETIDIVDHQGKWLARGAYSPASQIRARVWTFDPSESIDIAFF 79
>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural
genomics, PSI, protein structure initiative; 1.80A
{Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51
Length = 396
Score = 30.9 bits (70), Expect = 1.1
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 75 VEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLA---MEFMGSETID-DFF 128
V VV V+ +I GD V+V GKF+ G +P++++ + I+ D F
Sbjct: 21 VFKKGVVRVEGDIKPGDIVEVYTRGGKFLGKGFANPNSNIMVRIVTKDKDVEINKDLF 78
>2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD,
oxidoreductase, structural genomics; HET: NAD; 2.00A
{Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1
Length = 334
Score = 29.3 bits (66), Expect = 2.9
Identities = 14/80 (17%), Positives = 25/80 (31%), Gaps = 13/80 (16%)
Query: 248 MIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDA-------MEEI 300
I+ + P H ++ T A V T L +HV S+ +++
Sbjct: 181 AIKPTVEVPSHHGPDVQTVIPINIETMAFV----VPTTL--MHVHSVMVELKKPLTKDDV 234
Query: 301 AKARKAGQRVIGEPVVSGLV 320
+ RV+ G
Sbjct: 235 IDIFENTTRVLLFEKEKGFD 254
>1at0_A 17-hedgehog; developmental signaling molecule, cholesterol
transfer, signaling protein; 1.90A {Drosophila
melanogaster} SCOP: b.86.1.1
Length = 145
Score = 28.5 bits (63), Expect = 3.2
Identities = 8/33 (24%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 71 ADVYVEDGIVVAVQPNINVGDDVKVLDATGKFV 103
+ +E G+ + +++GD V + A G+ V
Sbjct: 6 STALLESGVRKPLG-ELSIGDRVLSMTANGQAV 37
>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW-
type/skeletal muscle SLOW-isoform, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Length = 103
Score = 27.7 bits (62), Expect = 3.2
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 465 DTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMR 507
DT Y G RV+ + EV+ V W + ++PG +R
Sbjct: 16 DTTAYCGERVELECEVSEDDANVKWFKNGEEIIPGPKSRYRIR 58
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional
regulator, transcription regulator; 2.50A {Bacillus
megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A
1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Length = 332
Score = 28.6 bits (65), Expect = 5.3
Identities = 45/278 (16%), Positives = 89/278 (32%), Gaps = 96/278 (34%)
Query: 132 AAALAGGTTMHIDFVIP-IN----GSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSD 186
A LA T + +IP I+ L G E + Y +++ ++ D+
Sbjct: 52 ARGLASKKTTTVGVIIPDISNIFYAELARGIE-------DIATMYKYNIILSNSDQNQDK 104
Query: 187 EMEV--MVKEK---GINSFKFFMAYKGSFMINDELLIEGFK-----RCKSLGALAMVHAE 236
E+ + + K GI FM+ + +EL +S + V +
Sbjct: 105 ELHLLNNMLGKQVDGI----IFMSGNVTEEHVEELKKSPVPVVLAASIESTNQIPSVTID 160
Query: 237 NGDAVFEGQKRMIELG------ITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVH 290
A F+ + +I+ G ++G ++ ++G Y
Sbjct: 161 YEQAAFDAVQSLIDSGHKNIAFVSGTLEEPINHAKKVKG-----------------Y--- 200
Query: 291 VMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDF-----VTAAKYVMSPPIR- 344
A+ E SGL + DS++ D+ + A + ++ +
Sbjct: 201 ---KRALTE-----------------SGLPVRDSYIVEGDYTYDSGIEAVEKLLEEDEKP 240
Query: 345 ----------ASGHNKALQAALATGI-----LQLVGTD 367
A G + A G+ L+++G D
Sbjct: 241 TAIFVGTDEMALG---VIHGAQDRGLNVPNDLEIIGFD 275
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein
structure initiative, MI center for structural genomics,
MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Length = 290
Score = 28.0 bits (62), Expect = 7.4
Identities = 10/56 (17%), Positives = 16/56 (28%)
Query: 270 EATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSW 325
A RA +A + L+++ R G V + DS
Sbjct: 22 LALKRAQLIAGVTQSHLHLLVCEKRRDHSAALNDLAQELREEGYSVSTNQAWKDSL 77
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET:
SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A
1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Length = 289
Score = 27.9 bits (63), Expect = 7.7
Identities = 42/279 (15%), Positives = 87/279 (31%), Gaps = 96/279 (34%)
Query: 131 QAAALAGGTTMHIDFVIP-IN----GSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVS 185
+ T + +IP I+ L G E + Y +++ ++ D+ +
Sbjct: 7 HHHHGSSKKTTTVGVIIPDISSIFYSELARGIE-------DIATMYKYNIILSNSDQNME 59
Query: 186 DEMEV--MVKEK---GINSFKFFMAYKGSFMINDELLIEGFK-----RCKSLGALAMVHA 235
E+ + + K GI FM + E + V
Sbjct: 60 KELHLLNTMLGKQVDGI----VFMGGNITDEHVAEFKRSPVPIVLAASVEEQEETPSVAI 115
Query: 236 ENGDAVFEGQKRMIELG------ITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVV 289
+ A+++ K +++ G ++GP ++R L+G Y
Sbjct: 116 DYEQAIYDAVKLLVDKGHTDIAFVSGPMAEPINRSKKLQG-----------------Y-- 156
Query: 290 HVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDF-----VTAAKYVMSPPIR 344
A+EE + L ++ ++ D+ + A +++MS +
Sbjct: 157 ----KRALEE-----------------ANLPFNEQFVAEGDYTYDSGLEALQHLMSLDKK 195
Query: 345 -----------ASGHNKALQAALATGI-----LQLVGTD 367
A G + AA G+ L ++G D
Sbjct: 196 PTAILSATDEMALG---IIHAAQDQGLSIPEDLDIIGFD 231
>2q07_A Uncharacterized protein AF0587; monomer, structural genomics,
PSI-2, protein structure initiative; 2.04A
{Archaeoglobus fulgidus dsm 4304} SCOP: b.122.1.1
c.18.1.4 d.17.6.5
Length = 306
Score = 27.9 bits (61), Expect = 8.1
Identities = 8/33 (24%), Positives = 10/33 (30%), Gaps = 4/33 (12%)
Query: 78 GIVVAVQPNINVGDDVKVLD----ATGKFVMPG 106
G V+ I D V + G M G
Sbjct: 247 GGVLRADEKIRPNDVVVFHNSRIFGVGLAAMSG 279
>2z08_A Universal stress protein family; uncharacterized conserved protein,
structural genomics, unknown function, NPPSFA; HET: ATP;
1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A*
2z09_A* 2z3v_A
Length = 137
Score = 27.1 bits (61), Expect = 8.5
Identities = 13/69 (18%), Positives = 19/69 (27%), Gaps = 15/69 (21%)
Query: 271 ATTRAIRLAEFVNTPLYVVHV---------------MSMDAMEEIAKARKAGQRVIGEPV 315
A A AE L VVH +E + + + G P
Sbjct: 18 AAEVAKAEAEAHGARLIVVHAYEPVPDYLGEPFFEEALRRRLERAEGVLEEARALTGVPK 77
Query: 316 VSGLVLDDS 324
L+L+
Sbjct: 78 EDALLLEGV 86
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.135 0.399
Gapped
Lambda K H
0.267 0.0538 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,673,726
Number of extensions: 564603
Number of successful extensions: 1643
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1501
Number of HSP's successfully gapped: 131
Length of query: 538
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 440
Effective length of database: 3,965,535
Effective search space: 1744835400
Effective search space used: 1744835400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.3 bits)