Query 009283
Match_columns 538
No_of_seqs 219 out of 1705
Neff 8.6
Searched_HMMs 46136
Date Thu Mar 28 22:40:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009283.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009283hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02835 oxidoreductase 100.0 2E-112 4E-117 906.1 61.0 530 4-535 7-536 (539)
2 PLN02991 oxidoreductase 100.0 7E-111 2E-115 889.3 60.5 517 19-537 21-537 (543)
3 PLN02354 copper ion binding / 100.0 3E-110 7E-115 890.1 60.2 530 3-535 6-543 (552)
4 PLN00044 multi-copper oxidase- 100.0 2E-108 4E-113 875.6 58.2 515 20-535 21-559 (596)
5 PLN02792 oxidoreductase 100.0 5E-108 1E-112 869.3 58.9 514 21-535 11-528 (536)
6 PLN02168 copper ion binding / 100.0 8E-108 2E-112 867.7 60.7 511 23-533 23-544 (545)
7 KOG1263 Multicopper oxidases [ 100.0 2E-101 5E-106 811.6 58.1 520 17-537 19-562 (563)
8 TIGR03389 laccase laccase, pla 100.0 1.9E-99 4E-104 813.6 58.7 497 24-530 1-539 (539)
9 PLN02604 oxidoreductase 100.0 1.6E-97 3E-102 800.1 58.9 502 17-535 15-566 (566)
10 PLN02191 L-ascorbate oxidase 100.0 1.3E-97 3E-102 798.8 57.5 495 23-535 20-566 (574)
11 TIGR03388 ascorbase L-ascorbat 100.0 1.6E-96 4E-101 790.3 56.1 488 26-531 1-539 (541)
12 TIGR03390 ascorbOXfungal L-asc 100.0 5.4E-94 1.2E-98 768.4 53.4 478 28-516 10-537 (538)
13 TIGR01480 copper_res_A copper- 100.0 9.8E-81 2.1E-85 665.0 49.5 427 27-511 46-587 (587)
14 PRK10965 multicopper oxidase; 100.0 3E-79 6.4E-84 649.3 46.5 434 26-511 45-523 (523)
15 PRK10883 FtsI repressor; Provi 100.0 2.9E-77 6.4E-82 628.9 43.3 400 28-513 47-470 (471)
16 COG2132 SufI Putative multicop 100.0 3.2E-62 7E-67 517.4 40.5 401 38-511 45-449 (451)
17 TIGR02376 Cu_nitrite_red nitri 100.0 2.6E-49 5.6E-54 395.9 26.6 264 21-297 22-299 (311)
18 PF07732 Cu-oxidase_3: Multico 100.0 1E-36 2.2E-41 260.8 11.7 116 32-147 1-117 (117)
19 PF07731 Cu-oxidase_2: Multico 100.0 4.6E-31 9.9E-36 235.0 8.9 109 404-512 28-136 (138)
20 PF00394 Cu-oxidase: Multicopp 99.9 4.5E-26 9.8E-31 207.3 14.1 138 158-295 1-158 (159)
21 TIGR03095 rusti_cyanin rusticy 99.8 8.6E-19 1.9E-23 155.6 11.5 102 41-144 37-148 (148)
22 TIGR02376 Cu_nitrite_red nitri 99.7 2.3E-15 5.1E-20 151.1 22.2 244 188-512 47-297 (311)
23 TIGR01480 copper_res_A copper- 99.7 1.9E-16 4.1E-21 170.6 11.2 112 25-144 471-587 (587)
24 TIGR03096 nitroso_cyanin nitro 99.5 8E-13 1.7E-17 113.4 11.9 110 4-130 4-121 (135)
25 PRK10965 multicopper oxidase; 99.2 8.4E-10 1.8E-14 118.4 21.6 229 46-279 213-509 (523)
26 TIGR03389 laccase laccase, pla 99.2 6.2E-10 1.3E-14 120.6 19.7 234 189-496 23-264 (539)
27 PLN02835 oxidoreductase 99.2 1.6E-09 3.4E-14 116.7 19.8 219 189-493 49-276 (539)
28 PRK10883 FtsI repressor; Provi 99.1 4.4E-09 9.5E-14 111.8 19.0 218 44-279 208-454 (471)
29 PLN02354 copper ion binding / 99.1 4E-09 8.7E-14 113.8 18.4 228 189-495 47-283 (552)
30 PLN02792 oxidoreductase 99.1 5.1E-09 1.1E-13 112.5 18.9 224 189-493 36-267 (536)
31 TIGR03390 ascorbOXfungal L-asc 99.1 7.8E-09 1.7E-13 111.8 19.5 237 189-494 28-281 (538)
32 PLN02991 oxidoreductase 99.1 5.3E-09 1.1E-13 112.3 17.8 219 189-492 48-276 (543)
33 PLN02168 copper ion binding / 99.0 1E-08 2.3E-13 110.2 19.1 220 189-486 46-267 (545)
34 PLN00044 multi-copper oxidase- 99.0 3.1E-08 6.7E-13 107.2 18.5 232 189-491 49-291 (596)
35 COG2132 SufI Putative multicop 98.9 2.2E-08 4.8E-13 106.6 16.4 229 42-279 186-435 (451)
36 PF07731 Cu-oxidase_2: Multico 98.9 2E-09 4.4E-14 95.5 5.8 89 56-145 33-136 (138)
37 TIGR03388 ascorbase L-ascorbat 98.9 8.3E-08 1.8E-12 104.1 19.3 250 189-495 21-280 (541)
38 PLN02604 oxidoreductase 98.9 1.2E-07 2.6E-12 103.3 19.6 249 189-496 44-302 (566)
39 PLN02191 L-ascorbate oxidase 98.8 2.2E-07 4.8E-12 101.1 18.5 251 188-493 42-301 (574)
40 PRK02710 plastocyanin; Provisi 98.7 2.2E-07 4.8E-12 79.9 12.8 74 56-144 46-119 (119)
41 PF13473 Cupredoxin_1: Cupredo 98.7 3.8E-08 8.2E-13 82.7 6.2 70 57-143 35-104 (104)
42 PF07732 Cu-oxidase_3: Multico 98.6 4.7E-08 1E-12 83.8 5.8 90 410-513 26-116 (117)
43 KOG1263 Multicopper oxidases [ 98.5 1.5E-05 3.2E-10 85.7 20.1 228 189-495 48-286 (563)
44 TIGR02656 cyanin_plasto plasto 98.3 2E-06 4.4E-11 71.4 8.3 82 56-144 16-99 (99)
45 PF00394 Cu-oxidase: Multicopp 98.2 3.8E-06 8.3E-11 76.3 7.1 92 410-512 60-157 (159)
46 TIGR03094 sulfo_cyanin sulfocy 98.1 0.00014 3E-09 65.0 14.6 96 48-147 75-188 (195)
47 TIGR03095 rusti_cyanin rusticy 98.1 1.4E-05 3.1E-10 71.2 8.0 88 410-510 52-147 (148)
48 PF00127 Copper-bind: Copper b 98.0 7.7E-06 1.7E-10 68.0 5.3 82 56-144 16-99 (99)
49 PRK02888 nitrous-oxide reducta 98.0 2E-05 4.3E-10 84.4 9.5 98 36-146 532-635 (635)
50 PF06525 SoxE: Sulfocyanin (So 97.9 0.0002 4.3E-09 65.6 12.1 100 47-147 75-189 (196)
51 TIGR02657 amicyanin amicyanin. 97.9 7.5E-05 1.6E-09 59.8 8.0 74 56-144 10-83 (83)
52 TIGR02656 cyanin_plasto plasto 97.8 0.00011 2.3E-09 61.1 7.6 83 409-510 16-98 (99)
53 TIGR02375 pseudoazurin pseudoa 97.5 0.00047 1E-08 58.6 8.2 76 56-147 14-90 (116)
54 TIGR03096 nitroso_cyanin nitro 97.4 0.00048 1E-08 59.6 7.4 59 411-496 62-120 (135)
55 COG3794 PetE Plastocyanin [Ene 97.2 0.0014 3E-08 56.3 8.0 75 57-145 54-128 (128)
56 TIGR03102 halo_cynanin halocya 97.0 0.0046 9.9E-08 52.5 8.5 74 56-144 41-115 (115)
57 PF13473 Cupredoxin_1: Cupredo 96.8 0.0025 5.4E-08 53.3 5.8 63 410-501 35-97 (104)
58 PF00127 Copper-bind: Copper b 96.7 0.011 2.4E-07 48.9 8.4 83 409-511 16-99 (99)
59 COG4454 Uncharacterized copper 96.2 0.039 8.4E-07 48.6 9.2 89 53-145 59-158 (158)
60 PRK02710 plastocyanin; Provisi 96.1 0.023 4.9E-07 48.8 7.6 71 411-510 48-118 (119)
61 TIGR02375 pseudoazurin pseudoa 96.1 0.032 6.8E-07 47.5 8.1 77 409-514 14-90 (116)
62 PRK10378 inactive ferrous ion 95.7 0.1 2.2E-06 53.5 11.4 77 54-147 41-119 (375)
63 PF06525 SoxE: Sulfocyanin (So 95.7 0.042 9.1E-07 50.5 7.5 88 189-278 74-171 (196)
64 PRK02888 nitrous-oxide reducta 95.6 0.041 8.8E-07 59.6 8.5 75 410-511 555-633 (635)
65 TIGR02657 amicyanin amicyanin. 94.5 0.16 3.5E-06 40.4 7.1 72 410-510 11-82 (83)
66 PF00116 COX2: Cytochrome C ox 94.5 0.2 4.3E-06 43.0 7.9 74 56-143 45-119 (120)
67 TIGR03102 halo_cynanin halocya 94.4 0.32 6.8E-06 41.3 8.8 74 410-511 42-115 (115)
68 COG4454 Uncharacterized copper 94.3 0.12 2.5E-06 45.6 6.1 93 412-511 65-157 (158)
69 TIGR02695 azurin azurin. Azuri 92.9 0.54 1.2E-05 40.1 7.6 86 56-142 15-124 (125)
70 TIGR02866 CoxB cytochrome c ox 92.6 1.1 2.3E-05 42.3 10.2 78 56-147 116-194 (201)
71 COG3794 PetE Plastocyanin [Ene 92.3 0.69 1.5E-05 39.9 7.6 74 410-511 54-127 (128)
72 PF00116 COX2: Cytochrome C ox 92.2 3.1 6.6E-05 35.7 11.6 61 200-279 45-105 (120)
73 TIGR02866 CoxB cytochrome c ox 90.2 1.1 2.4E-05 42.2 7.5 77 410-514 117-194 (201)
74 PF12690 BsuPI: Intracellular 87.9 5.1 0.00011 31.8 8.6 66 210-276 3-82 (82)
75 COG1622 CyoA Heme/copper-type 85.4 4.3 9.3E-05 39.4 8.4 77 57-147 137-214 (247)
76 TIGR03079 CH4_NH3mon_ox_B meth 83.3 13 0.00028 37.7 10.7 60 53-118 278-354 (399)
77 COG4263 NosZ Nitrous oxide red 82.7 1.8 3.8E-05 44.8 4.6 78 57-144 558-636 (637)
78 TIGR03094 sulfo_cyanin sulfocy 81.6 18 0.00038 33.1 10.0 95 411-512 86-186 (195)
79 KOG4063 Major epididymal secre 79.3 10 0.00022 33.4 7.4 60 58-117 49-123 (158)
80 TIGR01433 CyoA cytochrome o ub 77.4 5.5 0.00012 38.2 6.0 76 411-514 140-216 (226)
81 PF04744 Monooxygenase_B: Mono 76.6 9.5 0.00021 38.7 7.4 70 43-118 249-335 (381)
82 COG1622 CyoA Heme/copper-type 74.4 10 0.00022 36.8 7.0 78 410-515 137-215 (247)
83 MTH00140 COX2 cytochrome c oxi 73.0 81 0.0017 30.3 12.8 78 56-147 139-217 (228)
84 MTH00140 COX2 cytochrome c oxi 72.9 12 0.00025 36.1 7.0 77 410-514 140-217 (228)
85 PF10633 NPCBM_assoc: NPCBM-as 71.4 19 0.00041 27.9 6.7 67 205-279 1-76 (78)
86 PF14344 DUF4397: Domain of un 69.2 63 0.0014 27.3 10.1 21 212-232 3-24 (122)
87 MTH00047 COX2 cytochrome c oxi 67.3 33 0.00071 32.1 8.4 77 410-514 116-193 (194)
88 MTH00098 COX2 cytochrome c oxi 66.8 18 0.0004 34.7 6.8 77 410-514 140-217 (227)
89 PF07705 CARDB: CARDB; InterP 65.5 68 0.0015 25.5 10.4 67 204-279 14-84 (101)
90 MTH00129 COX2 cytochrome c oxi 65.4 17 0.00037 35.0 6.3 77 410-514 140-217 (230)
91 PRK05461 apaG CO2+/MG2+ efflux 65.2 8.4 0.00018 33.3 3.7 21 94-114 66-86 (127)
92 TIGR01432 QOXA cytochrome aa3 64.9 16 0.00034 34.8 6.0 76 412-515 132-208 (217)
93 COG2967 ApaG Uncharacterized p 64.4 9.2 0.0002 32.2 3.6 65 69-147 34-106 (126)
94 PF04151 PPC: Bacterial pre-pe 63.8 31 0.00067 26.0 6.4 65 201-277 5-69 (70)
95 PF01835 A2M_N: MG2 domain; I 63.2 17 0.00037 29.5 5.2 69 205-279 11-86 (99)
96 MTH00185 COX2 cytochrome c oxi 62.4 26 0.00056 33.7 6.9 77 410-514 140-217 (230)
97 PF12690 BsuPI: Intracellular 60.4 36 0.00078 26.9 6.3 56 58-124 17-79 (82)
98 PF05938 Self-incomp_S1: Plant 59.5 46 0.001 27.7 7.3 71 68-147 2-72 (110)
99 COG3354 FlaG Putative archaeal 59.4 1.2E+02 0.0025 26.8 9.4 83 189-278 51-142 (154)
100 MTH00008 COX2 cytochrome c oxi 57.7 37 0.0008 32.6 7.1 77 410-514 140-217 (228)
101 MTH00117 COX2 cytochrome c oxi 57.1 34 0.00074 32.8 6.8 77 410-514 140-217 (227)
102 PF08194 DIM: DIM protein; In 55.3 16 0.00034 24.0 2.7 18 1-18 1-18 (36)
103 PF05506 DUF756: Domain of unk 54.2 63 0.0014 25.8 6.9 64 55-126 7-73 (89)
104 MTH00076 COX2 cytochrome c oxi 52.6 38 0.00083 32.5 6.3 77 410-514 140-217 (228)
105 PF07172 GRP: Glycine rich pro 51.6 5.9 0.00013 32.3 0.5 12 1-12 1-12 (95)
106 MTH00047 COX2 cytochrome c oxi 49.5 2.2E+02 0.0049 26.5 12.3 76 58-147 117-193 (194)
107 PF14481 Fimbrial_PilY2: Type 48.8 2.8 6E-05 34.3 -1.8 31 55-85 63-96 (118)
108 COG1470 Predicted membrane pro 47.7 1.6E+02 0.0034 31.3 10.0 85 201-294 389-481 (513)
109 MTH00051 COX2 cytochrome c oxi 47.4 59 0.0013 31.4 6.7 77 410-514 144-221 (234)
110 PRK10378 inactive ferrous ion 47.2 82 0.0018 32.6 8.0 86 190-296 33-118 (375)
111 MTH00023 COX2 cytochrome c oxi 43.9 86 0.0019 30.4 7.2 77 410-514 151-228 (240)
112 PTZ00047 cytochrome c oxidase 43.7 1.3E+02 0.0029 27.1 7.7 76 411-514 74-150 (162)
113 MTH00139 COX2 cytochrome c oxi 42.9 70 0.0015 30.7 6.4 77 410-514 140-217 (226)
114 TIGR01000 bacteriocin_acc bact 42.3 50 0.0011 35.3 6.0 59 5-68 24-82 (457)
115 TIGR01432 QOXA cytochrome aa3 41.4 3.2E+02 0.0069 25.9 11.3 75 57-146 130-206 (217)
116 PF10969 DUF2771: Protein of u 40.2 64 0.0014 29.2 5.3 51 58-116 70-121 (161)
117 PF04379 DUF525: Protein of un 38.9 81 0.0017 25.5 5.2 50 210-262 15-68 (90)
118 PF14524 Wzt_C: Wzt C-terminal 37.8 1.2E+02 0.0026 25.8 6.8 76 200-278 26-107 (142)
119 PRK13202 ureB urease subunit b 37.4 78 0.0017 26.1 4.8 59 58-116 12-84 (104)
120 PF11142 DUF2917: Protein of u 36.7 1E+02 0.0023 22.9 5.2 32 203-240 2-33 (63)
121 MTH00038 COX2 cytochrome c oxi 36.4 1.3E+02 0.0027 29.0 7.1 77 410-514 140-217 (229)
122 PLN03148 Blue copper-like prot 36.2 1.8E+02 0.0039 26.5 7.5 33 113-147 89-121 (167)
123 PRK10525 cytochrome o ubiquino 35.7 71 0.0015 32.3 5.4 73 411-511 152-225 (315)
124 PF11614 FixG_C: IG-like fold 35.7 1.5E+02 0.0033 24.8 6.9 48 210-266 34-83 (118)
125 PF14392 zf-CCHC_4: Zinc knuck 35.3 61 0.0013 22.7 3.5 40 463-502 5-45 (49)
126 PF07172 GRP: Glycine rich pro 34.7 21 0.00045 29.2 1.2 20 4-23 7-26 (95)
127 PF02102 Peptidase_M35: Deuter 34.3 13 0.00029 38.1 0.0 45 78-127 77-122 (359)
128 PRK10301 hypothetical protein; 33.6 2.1E+02 0.0046 24.5 7.3 23 64-86 85-108 (124)
129 cd00918 Der-p2_like Several gr 33.4 1.7E+02 0.0037 24.9 6.7 62 56-117 19-88 (120)
130 smart00758 PA14 domain in bact 32.8 2.7E+02 0.0058 23.7 8.1 60 203-267 52-112 (136)
131 PF07691 PA14: PA14 domain; I 32.7 1.8E+02 0.004 24.9 7.2 60 203-267 54-120 (145)
132 PRK05461 apaG CO2+/MG2+ efflux 31.8 1.3E+02 0.0028 26.0 5.7 50 210-262 32-85 (127)
133 COG1188 Ribosome-associated he 29.8 39 0.00085 27.7 2.0 29 48-76 36-64 (100)
134 cd00916 Npc2_like Niemann-Pick 29.4 2.3E+02 0.0049 24.2 6.9 61 57-117 22-92 (123)
135 PRK13254 cytochrome c-type bio 29.1 60 0.0013 28.9 3.3 67 27-98 34-101 (148)
136 PRK01904 hypothetical protein; 28.9 93 0.002 29.7 4.8 59 1-74 1-68 (219)
137 PRK13203 ureB urease subunit b 28.6 1.4E+02 0.003 24.6 4.9 56 59-114 13-81 (102)
138 PF10989 DUF2808: Protein of u 28.4 60 0.0013 28.7 3.2 26 472-497 99-128 (146)
139 TIGR00192 urease_beta urease, 28.3 1.4E+02 0.0031 24.5 4.9 59 58-116 12-83 (101)
140 PRK09918 putative fimbrial cha 28.1 2.8E+02 0.006 26.6 8.0 14 251-264 187-200 (230)
141 PRK13202 ureB urease subunit b 27.6 2.3E+02 0.0049 23.5 6.0 64 201-265 11-84 (104)
142 PF04379 DUF525: Protein of un 27.5 25 0.00054 28.4 0.5 23 94-116 49-71 (90)
143 MTH00027 COX2 cytochrome c oxi 27.5 1.9E+02 0.004 28.5 6.7 77 410-514 174-251 (262)
144 TIGR01433 CyoA cytochrome o ub 27.5 5.5E+02 0.012 24.5 11.2 75 57-146 139-215 (226)
145 PRK13159 cytochrome c-type bio 25.9 1.4E+02 0.0031 26.7 5.0 69 26-98 33-102 (155)
146 cd00407 Urease_beta Urease bet 25.7 1.8E+02 0.0038 24.0 5.0 56 59-114 13-81 (101)
147 MTH00154 COX2 cytochrome c oxi 25.0 2.6E+02 0.0056 26.8 7.0 77 410-514 140-217 (227)
148 PF10989 DUF2808: Protein of u 24.0 92 0.002 27.5 3.6 28 101-128 96-126 (146)
149 PF14874 PapD-like: Flagellar- 23.9 3.8E+02 0.0082 21.4 9.2 59 204-274 15-82 (102)
150 MTH00129 COX2 cytochrome c oxi 23.9 6.5E+02 0.014 24.1 12.2 76 57-146 140-216 (230)
151 TIGR03656 IsdC heme uptake pro 23.7 4.5E+02 0.0098 25.0 8.1 100 2-117 5-109 (217)
152 PF10731 Anophelin: Thrombin i 22.6 87 0.0019 23.0 2.4 17 2-18 5-21 (65)
153 PF06255 DUF1020: Protein of u 22.4 1.7E+02 0.0036 28.9 5.0 37 81-117 101-137 (327)
154 KOG4387 Ornithine decarboxylas 22.3 35 0.00076 31.0 0.5 29 59-87 71-99 (191)
155 TIGR02695 azurin azurin. Azuri 21.7 5.2E+02 0.011 22.3 9.2 96 409-509 15-124 (125)
156 PF10794 DUF2606: Protein of u 21.2 2.1E+02 0.0045 24.3 4.7 34 27-60 42-76 (131)
157 MTH00080 COX2 cytochrome c oxi 21.0 3.6E+02 0.0078 25.9 7.1 77 410-514 143-220 (231)
158 TIGR00192 urease_beta urease, 20.5 3.9E+02 0.0084 22.0 6.0 64 201-265 11-83 (101)
159 TIGR02988 YaaA_near_RecF S4 do 20.2 62 0.0014 23.5 1.4 25 189-213 34-58 (59)
160 PRK11372 lysozyme inhibitor; P 20.0 5.2E+02 0.011 21.6 7.1 9 1-9 1-9 (109)
No 1
>PLN02835 oxidoreductase
Probab=100.00 E-value=1.9e-112 Score=906.08 Aligned_cols=530 Identities=63% Similarity=1.105 Sum_probs=432.0
Q ss_pred hhhHHHHHHHHHHHhccccCCCeEEEEEEEEEEEecCCCeeeEEEEEcCcCcCceEEEecCCEEEEEEEeCCCCCceeee
Q 009283 4 YSSICCLLLVFMLVSCTRGESPYRFFNWNVTYGDIYPLGVKQQGILINGQFPGPSIEAVTNDNLIISVFNALDEPFLISW 83 (538)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~~~N~l~~~~siH~ 83 (538)
+++||+++.++-..++..+.+++|+|+|++++..+.+||+++++|+|||++|||+|++++||+|+|+|+|+|+++|+|||
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~y~~~v~~~~~~~dg~~~~~~~~NG~~PGP~I~~~~GD~v~v~v~N~L~~~ttiHW 86 (539)
T PLN02835 7 LHLLLGVLAVLSSVSLVNGEDPYKYYTWTVTYGTISPLGVPQQVILINGQFPGPRLDVVTNDNIILNLINKLDQPFLLTW 86 (539)
T ss_pred HHHHHHHHHHHHHHhhhhccCcEEEEEEEEEEEEeccCCeEEEEEEECCcCCCCCEEEECCCEEEEEEEeCCCCCCcEEe
Confidence 56677744433333455666789999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCCeEEEEEEecCCccceeeecCchhhhhcceeeEEEEecCCCCCCCCCCCCCceEEE
Q 009283 84 NGVQQRRNSWQDGVYGTNCPIPPGKNFTYVLQVKDQIGSYFYFPSLAFHKAAGGYGGIKIASRPLIPVPFDPPAGDFTIL 163 (538)
Q Consensus 84 HG~~~~~~~~~DG~~~tq~~i~pG~~~~Y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~ 163 (538)
||++|+.++++||+++|||||+||++|+|+|++++++||||||||++.|+.+||+|+|||++++..+.+++.+|+|++++
T Consensus 87 HGl~~~~~~~~DGv~~tQ~pI~PG~sf~Y~F~~~~q~GT~WYHsH~~~q~~~Gl~G~lIV~~~~~~~~p~~~~d~e~~l~ 166 (539)
T PLN02835 87 NGIKQRKNSWQDGVLGTNCPIPPNSNYTYKFQTKDQIGTFTYFPSTLFHKAAGGFGAINVYERPRIPIPFPLPDGDFTLL 166 (539)
T ss_pred CCcccCCCCCCCCCccCcCCCCCCCcEEEEEEECCCCEeEEEEeCccchhcCcccceeEEeCCCCCCcCCCCCCceEEEE
Confidence 99999999999999999999999999999999867899999999999999999999999987655555666779999999
Q ss_pred EeeecccChhhHHHHhccCCCCCCCCeEEEcCCCCCCceEEEecCCEEEEEEEecCCCceEEEEEeCCeeEEEEEcCeec
Q 009283 164 AGDWYKKNHTDLKAILDSGSDLPFPDGLVINGRGSNANTFTVDQGKTYRFRISNVGISTSINFRIQGHKMLLVEVEGTHT 243 (538)
Q Consensus 164 l~d~~~~~~~~~~~~~~~~~~~~~~~~~liNG~~~~~p~~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~ 243 (538)
++||++.....+...+..+...+.++.+||||+. .+.++|++||+|||||||+|..+.+.|+|+||+|+||++||.++
T Consensus 167 l~Dw~~~~~~~~~~~~~~g~~~~~~d~~liNG~~--~~~~~v~~G~~yRlRliNa~~~~~~~f~i~gH~~~VI~~DG~~v 244 (539)
T PLN02835 167 VGDWYKTSHKTLQQRLDSGKVLPFPDGVLINGQT--QSTFSGDQGKTYMFRISNVGLSTSLNFRIQGHTMKLVEVEGSHT 244 (539)
T ss_pred eeccccCCHHHHHHHhhcCCCCCCCceEEEcccc--CceEEECCCCEEEEEEEEcCCCccEEEEECCCEEEEEEECCccC
Confidence 9999999876665555566566788999999999 78999999999999999999999999999999999999999999
Q ss_pred ccceecEEEEcCCCeEEEEEEeCCCCcceEEEEEeeccCCccceEEEEEecCCCCCCCCCCCCCCCccccchhhhhhhhc
Q 009283 244 LQNTYDSLDIHLGQSYSVLVRADQPPQGYYIVISTRFTSQVLSATSVLHYSNSAGSVSGPPPGGPTTQIDWSLEQARSLR 323 (538)
Q Consensus 244 ~p~~~~~v~l~pgeR~dv~v~~~~~~g~y~i~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~P~~~~~~~~~~~~~~~ 323 (538)
+|..++++.|++||||||+|++++++|+|||++...+........|+|+|.++..+.+.+.|..|..+.......+....
T Consensus 245 ~p~~~~~l~i~~GqRydvlv~~~~~~g~y~i~a~~~~~~~~~~~~ail~Y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~ 324 (539)
T PLN02835 245 IQNIYDSLDVHVGQSVAVLVTLNQSPKDYYIVASTRFTRQILTATAVLHYSNSRTPASGPLPALPSGELHWSMRQARTYR 324 (539)
T ss_pred CCceeeEEEECcCceEEEEEEcCCCCCcEEEEEEccccCCCcceEEEEEECCCCCCCCCCCCCCCccccccccchhhccc
Confidence 99999999999999999999999888999999865443344678999999886533333344333211111222222222
Q ss_pred ccCCCCCCCCCCCCCCCccccccceEEEEecccCCCCCeEeEEECCeeecCCCCchhhhcccCCCCccccCCCCCCCCCC
Q 009283 324 RNLTASGPRPNPQGSYHYGLINTTHTIRLQNTAPTINGKQRYAVNSVSFIPADTPLKLADYFKIPGVFSVGSIPDNPTGG 403 (538)
Q Consensus 324 ~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~iNg~~f~~p~~P~l~~~~~~~~g~~~~~~~~~~p~~~ 403 (538)
..+......+.+..+........++++.+.......+|...|++||++|..|++|+|++.++..++.|+.++....+.+.
T Consensus 325 ~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~w~iN~~s~~~p~~P~L~~~~~~~~~~~~~~~~~~~~~~~ 404 (539)
T PLN02835 325 WNLTASAARPNPQGSFHYGKITPTKTIVLANSAPLINGKQRYAVNGVSYVNSDTPLKLADYFGIPGVFSVNSIQSLPSGG 404 (539)
T ss_pred cccCccccCCCCCccccccccCCCceEEEeccccccCCeEEEEECCcccCCCCCChhhhhhhcCCCccccCccccCCCCC
Confidence 22333333333322221222223445444322222356688999999999899999887766667777755433334433
Q ss_pred CcceeeEEEEccCCcEEEEEEEcCCCCCCCccccCCCceEEeecCCCCCCCCCCCcCCCCCCceeeEEeCCCCEEEEEEE
Q 009283 404 GAYLQTSVMAADFRGFAEVVFENPEDTLQSWHIDGHNFFAVGMDGGEWTPASRLTYNLRDTISRCTVQVYPKSWTAVYVP 483 (538)
Q Consensus 404 ~~~~~~~~~~~~~g~~v~~~l~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~ 483 (538)
..+.++.++.++.|++|||+|+|.+...||||||||+||||++|.|.|++.....+|+.+|.+|||+.|+++||++|||+
T Consensus 405 ~~~~~t~~~~~~~~~~Veivi~N~~~~~HP~HLHGh~F~Vlg~G~g~~~~~~~~~~nl~nP~~RDTv~vp~~gw~~IrF~ 484 (539)
T PLN02835 405 PAFVATSVMQTSLHDFLEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQWTPAKRSLYNLVDALTRHTAQVYPKSWTTILVS 484 (539)
T ss_pred ccccCCeEEEcCCCCEEEEEEECCCCCCCCCCCCCccEEEEeccCCCCCcccccccCCCCCCccceEEeCCCCEEEEEEE
Confidence 45567889999999999999999988899999999999999999998876655568899999999999999999999999
Q ss_pred ccCcceeeeeecchhhhhcceEEEEEEecCCCcCCccCCCCCchhccccccC
Q 009283 484 LDNVGMWNIRSENWARQYLGQQFYLRVYSSANSWRDEYPIPSNALLCGRAVG 535 (538)
Q Consensus 484 adnpG~w~~HCHil~H~d~GMm~~~~V~~p~~~~~~~~~~p~~~~~c~~~~~ 535 (538)
+||||.|+|||||++|+..||+++|.|.++.+...+++++|+++++||..++
T Consensus 485 aDNPG~Wl~HCHi~~H~~~Gm~~~~~V~~~~~~~~~~~~~P~~~~~Cg~~~~ 536 (539)
T PLN02835 485 LDNQGMWNMRSAIWERQYLGQQFYLRVWNQVHSLANEYDIPDNALLCGKAIG 536 (539)
T ss_pred CcCCEEeeeeecchhhhhcccEEEEEEccCCCccccccCCCccccccccCcc
Confidence 9999999999999999999999999999876665677899999999998776
No 2
>PLN02991 oxidoreductase
Probab=100.00 E-value=7.3e-111 Score=889.25 Aligned_cols=517 Identities=70% Similarity=1.237 Sum_probs=426.5
Q ss_pred ccccCCCeEEEEEEEEEEEecCCCeeeEEEEEcCcCcCceEEEecCCEEEEEEEeCCCCCceeeeccccCCCCCCCCCCC
Q 009283 19 CTRGESPYRFFNWNVTYGDIYPLGVKQQGILINGQFPGPSIEAVTNDNLIISVFNALDEPFLISWNGVQQRRNSWQDGVY 98 (538)
Q Consensus 19 ~~~~~~~~~~~~l~~~~~~~~~~G~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~~~N~l~~~~siH~HG~~~~~~~~~DG~~ 98 (538)
+..+++++++|+|++++..+.+||+.+++++|||++|||+|++++||+|+|+|+|+|+++++|||||++|..++++||++
T Consensus 21 ~~~~~~~~~~~~~~vt~~~~~pdG~~r~~~~vNG~~PGP~I~~~~GD~v~V~V~N~L~~~ttiHWHGi~q~~~~~~DGv~ 100 (543)
T PLN02991 21 FVAAEDPYRFFEWHVTYGNISPLGVAQQGILINGKFPGPDIISVTNDNLIINVFNHLDEPFLISWSGIRNWRNSYQDGVY 100 (543)
T ss_pred hhhccCceEEEEEEEEEEEeCCCCEEEEEEEEcCCCCCCcEEEECCCEEEEEecCCCCCCccEEECCcccCCCccccCCC
Confidence 34556789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCeEEEEEEecCCccceeeecCchhhhhcceeeEEEEecCCCCCCCCCCCCCceEEEEeeecccChhhHHHH
Q 009283 99 GTNCPIPPGKNFTYVLQVKDQIGSYFYFPSLAFHKAAGGYGGIKIASRPLIPVPFDPPAGDFTILAGDWYKKNHTDLKAI 178 (538)
Q Consensus 99 ~tq~~i~pG~~~~Y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~l~d~~~~~~~~~~~~ 178 (538)
+|||||+||++|+|+|++++|+||||||||.+.|+.+||+|+|||++++.++.++..+++|++++|+||+++....+...
T Consensus 101 ~tQcpI~PG~sftY~F~~~~q~GT~WYHsH~~~q~~~Gl~G~lIV~~~~~~~~p~~~~d~d~~i~l~DW~~~~~~~~~~~ 180 (543)
T PLN02991 101 GTTCPIPPGKNYTYALQVKDQIGSFYYFPSLGFHKAAGGFGAIRISSRPLIPVPFPAPADDYTVLIGDWYKTNHKDLRAQ 180 (543)
T ss_pred CCCCccCCCCcEEEEEEeCCCCcceEEecCcchhhhCCCeeeEEEeCCcccCcccccccceeEEEecceecCCHHHHHHH
Confidence 99999999999999999976899999999999999999999999999876666676678899999999999876666555
Q ss_pred hccCCCCCCCCeEEEcCCCCCCceEEEecCCEEEEEEEecCCCceEEEEEeCCeeEEEEEcCeecccceecEEEEcCCCe
Q 009283 179 LDSGSDLPFPDGLVINGRGSNANTFTVDQGKTYRFRISNVGISTSINFRIQGHKMLLVEVEGTHTLQNTYDSLDIHLGQS 258 (538)
Q Consensus 179 ~~~~~~~~~~~~~liNG~~~~~p~~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~~~v~l~pgeR 258 (538)
+..+...+.+|.+||||+.. .+.++|++||+|||||||+|..+.+.|+|+||+|+||++||.+++|..++++.|++|||
T Consensus 181 ~~~~~~~~~~d~~liNG~~~-~~~~~v~~G~~yRlRiINa~~~~~~~~~idgH~~tVIa~DG~~~~p~~~~~l~i~~GQR 259 (543)
T PLN02991 181 LDNGGKLPLPDGILINGRGS-GATLNIEPGKTYRLRISNVGLQNSLNFRIQNHTMKLVEVEGTHTIQTPFSSLDVHVGQS 259 (543)
T ss_pred hhcCCCCCCCCEEEEccCCC-CceEEECCCCEEEEEEEeccCCeeEEEEECCCEEEEEEeCCccccceeeeEEEEcCCcE
Confidence 55555567899999999973 47899999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCCCcceEEEEEeeccCCccceEEEEEecCCCCCCCCCCCCCCCccccchhhhhhhhcccCCCCCCCCCCCCC
Q 009283 259 YSVLVRADQPPQGYYIVISTRFTSQVLSATSVLHYSNSAGSVSGPPPGGPTTQIDWSLEQARSLRRNLTASGPRPNPQGS 338 (538)
Q Consensus 259 ~dv~v~~~~~~g~y~i~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~P~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~ 338 (538)
|||+|++++++|+|||++...+......+.|||+|+++..+.+.+.|..|. +..+..+.....+..+.+....+.|..+
T Consensus 260 ydvlv~a~~~~~~y~i~~~~~~~~~~~~~~AIl~Y~g~~~~~~~~~p~~p~-~~~~~~~~~~~~~~~l~p~~~~~~p~~~ 338 (543)
T PLN02991 260 YSVLITADQPAKDYYIVVSSRFTSKILITTGVLHYSNSAGPVSGPIPDGPI-QLSWSFDQARAIKTNLTASGPRPNPQGS 338 (543)
T ss_pred EEEEEECCCCCCcEEEEEeeccCCCCcceEEEEEeCCCCCCCCCCCCCCCc-cccccccchhhhhhcccCCCCCCCCCcc
Confidence 999999999899999999875444456789999999875322223333332 1122222111222334333333333332
Q ss_pred CCccccccceEEEEecccCCCCCeEeEEECCeeecCCCCchhhhcccCCCCccccCCCCCCCCCCCcceeeEEEEccCCc
Q 009283 339 YHYGLINTTHTIRLQNTAPTINGKQRYAVNSVSFIPADTPLKLADYFKIPGVFSVGSIPDNPTGGGAYLQTSVMAADFRG 418 (538)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~iNg~~f~~p~~P~l~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~g~ 418 (538)
..+.....++++.+.......+|...|+|||.+|..|++|+|++.++.++|.|+.+...+.|.+......+.++.++.|+
T Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~iN~~s~~~p~~p~L~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 418 (543)
T PLN02991 339 YHYGKINITRTIRLANSAGNIEGKQRYAVNSASFYPADTPLKLADYFKIAGVYNPGSIPDQPTNGAIFPVTSVMQTDYKA 418 (543)
T ss_pred ccccccccceeEEEeecccccCceEEEEECCCccCCCCCChhhhhhhcccCccccccccccCCCCccccCCcEEEcCCCC
Confidence 22222234444444321112346678999999999999999988777677888765333444433344456788999999
Q ss_pred EEEEEEEcCCCCCCCccccCCCceEEeecCCCCCCCCCCCcCCCCCCceeeEEeCCCCEEEEEEEccCcceeeeeecchh
Q 009283 419 FAEVVFENPEDTLQSWHIDGHNFFAVGMDGGEWTPASRLTYNLRDTISRCTVQVYPKSWTAVYVPLDNVGMWNIRSENWA 498 (538)
Q Consensus 419 ~v~~~l~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adnpG~w~~HCHil~ 498 (538)
+|||+|+|.+...||||||||+||||++|.|.|++.+...||+.+|++|||+.||++||++|||++||||+|+|||||..
T Consensus 419 ~VeiViqn~~~~~HP~HLHGh~F~Vvg~G~G~f~~~~~~~~Nl~nP~rRDTv~vp~~Gw~vIRF~aDNPG~W~~HCHi~~ 498 (543)
T PLN02991 419 FVEIVFENWEDIVQTWHLDGYSFYVVGMELGKWSAASRKVYNLNDAVSRCTVQVYPRSWTAIYVSLDNVGMWNLRSELWE 498 (543)
T ss_pred EEEEEEeCCCCCCCCeeeCCcceEEEEeCCCCCCcccccccCCCCCCcccEEEECCCCEEEEEEECCCCEEeeeeeCccc
Confidence 99999999988899999999999999999999987766789999999999999999999999999999999999999999
Q ss_pred hhhcceEEEEEEecCCCcCCccCCCCCchhccccccCCC
Q 009283 499 RQYLGQQFYLRVYSSANSWRDEYPIPSNALLCGRAVGHR 537 (538)
Q Consensus 499 H~d~GMm~~~~V~~p~~~~~~~~~~p~~~~~c~~~~~~~ 537 (538)
|+..||++++.|.++.+...+++++|.++++||.-++.+
T Consensus 499 h~~~gm~~~~~v~~~~~~~~~~~~~P~~~~~Cg~~~~~~ 537 (543)
T PLN02991 499 RQYLGQQFYMRVYTTSTSLRDEYLIPKNALLCGRATGHH 537 (543)
T ss_pred cccccEEEEEEecCCCCccccccCCCcccCccccCCCCC
Confidence 999999999999887777667889999999998777654
No 3
>PLN02354 copper ion binding / oxidoreductase
Probab=100.00 E-value=3.2e-110 Score=890.08 Aligned_cols=530 Identities=58% Similarity=1.052 Sum_probs=425.7
Q ss_pred chhhHHHHHHHHHHHhccccCCCeEEEEEEEEEEEecCCCeeeEEEEEcCcCcCceEEEecCCEEEEEEEeCCCCCceee
Q 009283 3 SYSSICCLLLVFMLVSCTRGESPYRFFNWNVTYGDIYPLGVKQQGILINGQFPGPSIEAVTNDNLIISVFNALDEPFLIS 82 (538)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~~~N~l~~~~siH 82 (538)
+++.++|++.++++. ..+++++++|+|++++..+.+||+.+++++|||++|||+|++++||+|+|+|+|+|+++++||
T Consensus 6 ~~~~~~~~~~~~~~~--~~~~~~~~~y~~~v~~~~~~pdG~~r~~~~iNGq~PGP~I~~~~GD~v~V~v~N~l~~~ttiH 83 (552)
T PLN02354 6 LLAVLLCLAAAVALV--VRAEDPYFFFTWNVTYGTASPLGVPQQVILINGQFPGPNINSTSNNNIVINVFNNLDEPFLLT 83 (552)
T ss_pred HHHHHHHHHHHHHHh--hhccccEEEEEEEEEEEEecCCCeEEEEEEECCCCcCCcEEEeCCCEEEEEEEECCCCCcccc
Confidence 345555554444433 344557899999999999999999999999999999999999999999999999999999999
Q ss_pred eccccCCCCCCCCCCCCCCCCCCCCCeEEEEEEecCCccceeeecCchhhhhcceeeEEEEecCCCCCCCCCCCCCceEE
Q 009283 83 WNGVQQRRNSWQDGVYGTNCPIPPGKNFTYVLQVKDQIGSYFYFPSLAFHKAAGGYGGIKIASRPLIPVPFDPPAGDFTI 162 (538)
Q Consensus 83 ~HG~~~~~~~~~DG~~~tq~~i~pG~~~~Y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l 162 (538)
|||++|+.++++||+++|||||+||++|+|+|++.+++||||||||++.|+.+||+|+|||++++..+.+|+.+++|+++
T Consensus 84 WHGi~q~~~~~~DGv~~TQcpI~PG~sf~Y~F~~~~q~GT~WYHsH~~~Q~~~Gl~G~lII~~~~~~~~p~~~~d~e~~l 163 (552)
T PLN02354 84 WSGIQQRKNSWQDGVPGTNCPIPPGTNFTYHFQPKDQIGSYFYYPSTGMHRAAGGFGGLRVNSRLLIPVPYADPEDDYTV 163 (552)
T ss_pred cccccCCCCcccCCCcCCcCCCCCCCcEEEEEEeCCCCcceEEecCccceecCCccceEEEcCCcCCCCCCCCcCceEEE
Confidence 99999999999999999999999999999999986689999999999999999999999999987666777777899999
Q ss_pred EEeeecccChhhHHHHhccCCCCCCCCeEEEcCCCC-----CCceEEEecCCEEEEEEEecCCCceEEEEEeCCeeEEEE
Q 009283 163 LAGDWYKKNHTDLKAILDSGSDLPFPDGLVINGRGS-----NANTFTVDQGKTYRFRISNVGISTSINFRIQGHKMLLVE 237 (538)
Q Consensus 163 ~l~d~~~~~~~~~~~~~~~~~~~~~~~~~liNG~~~-----~~p~~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via 237 (538)
+++||+++....+...+..+...+.++.+||||+.. ..+.++|++||+|||||||+|....+.|+|+||+|+||+
T Consensus 164 ~l~Dw~~~~~~~~~~~~~~g~~~~~~d~~liNG~~~~~~~~~~~~~~v~~Gk~yRlRiINa~~~~~~~f~IdgH~~tVIa 243 (552)
T PLN02354 164 LIGDWYTKSHTALKKFLDSGRTLGRPDGVLINGKSGKGDGKDEPLFTMKPGKTYRYRICNVGLKSSLNFRIQGHKMKLVE 243 (552)
T ss_pred EeeeeccCCHHHHHHHHhcCCCCCCCCeEEEeCCcCCCCCCCceEEEECCCCEEEEEEEecCCCceEEEEECCceEEEEE
Confidence 999999998766665555554456789999999963 257899999999999999999999999999999999999
Q ss_pred EcCeecccceecEEEEcCCCeEEEEEEeCCCCcceEEEEEeeccCCccceEEEEEecCCCCCCCCCCCCCCCccccchhh
Q 009283 238 VEGTHTLQNTYDSLDIHLGQSYSVLVRADQPPQGYYIVISTRFTSQVLSATSVLHYSNSAGSVSGPPPGGPTTQIDWSLE 317 (538)
Q Consensus 238 ~DG~~~~p~~~~~v~l~pgeR~dv~v~~~~~~g~y~i~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~P~~~~~~~~~ 317 (538)
+||.+++|..++++.|++||||||+|++++++|+|||++...+........|+|+|.++..+.+.+.|..|. ...+...
T Consensus 244 ~DG~~v~p~~~~~l~i~~GqRydVlv~a~~~~g~Y~i~a~~~~~~~~~~~~ail~Y~g~~~~~~~~~p~~~~-~~~~~~~ 322 (552)
T PLN02354 244 MEGSHVLQNDYDSLDVHVGQCFSVLVTANQAPKDYYMVASTRFLKKVLTTTGIIRYEGGKGPASPELPEAPV-GWAWSLN 322 (552)
T ss_pred eCCcccCCcceeEEEEccCceEEEEEECCCCCCcEEEEEeccccCCCccEEEEEEECCCCCCCCCCCCCCCc-ccccchh
Confidence 999999999999999999999999999998889999999864444456789999998865332222332221 1111222
Q ss_pred hhhhhcccCCCCCCCCCCCCCCCccccccceEEEEecccCCCCCeEeEEECCeeecCCCCchhhhcccCC-CCccccCCC
Q 009283 318 QARSLRRNLTASGPRPNPQGSYHYGLINTTHTIRLQNTAPTINGKQRYAVNSVSFIPADTPLKLADYFKI-PGVFSVGSI 396 (538)
Q Consensus 318 ~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~iNg~~f~~p~~P~l~~~~~~~-~g~~~~~~~ 396 (538)
.+...+.++.+....+.+.....+.....++++.+.......++...|+|||++|..|++|+|.+.++++ .|.++.+..
T Consensus 323 ~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~iNn~s~~~p~~P~L~~~~~~~~~g~~~~~~~ 402 (552)
T PLN02354 323 QFRSFRWNLTASAARPNPQGSYHYGKINITRTIKLVNSASKVDGKLRYALNGVSHVDPETPLKLAEYFGVADKVFKYDTI 402 (552)
T ss_pred hhhhhhhcccccccCCCCCCccccccccccceEEEecccccCCceEEEEECCccCCCCCCChHHhhhhcccCCccccCcc
Confidence 2333333333322233332221111223445554543222234567899999999999999998765433 355543311
Q ss_pred CCCC-C-CCCcceeeEEEEccCCcEEEEEEEcCCCCCCCccccCCCceEEeecCCCCCCCCCCCcCCCCCCceeeEEeCC
Q 009283 397 PDNP-T-GGGAYLQTSVMAADFRGFAEVVFENPEDTLQSWHIDGHNFFAVGMDGGEWTPASRLTYNLRDTISRCTVQVYP 474 (538)
Q Consensus 397 ~~~p-~-~~~~~~~~~~~~~~~g~~v~~~l~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vp~ 474 (538)
.+.| . ....+.+..++.++.|++|||+|+|.+...||||||||+||||++|.|.|++.....||+.+|++|||+.||+
T Consensus 403 ~~~pp~~~~~~~~~~~v~~~~~~~~VeiVi~n~~~~~HP~HLHGh~F~Vlg~G~G~~~~~~~~~~nl~nP~rRDTv~vp~ 482 (552)
T PLN02354 403 KDNPPAKITKIKIQPNVLNITFRTFVEIIFENHEKSMQSWHLDGYSFFAVAVEPGTWTPEKRKNYNLLDAVSRHTVQVYP 482 (552)
T ss_pred ccCCccccCccccCCeeEEcCCCCEEEEEEeCCCCCCCCCcCCCccEEEEeecCCCCCccccccCCcCCCCccceEEeCC
Confidence 1111 1 1223446788899999999999999988899999999999999999999987666779999999999999999
Q ss_pred CCEEEEEEEccCcceeeeeecchhhhhcceEEEEEEecCCCcCCccCCCCCchhccccccC
Q 009283 475 KSWTAVYVPLDNVGMWNIRSENWARQYLGQQFYLRVYSSANSWRDEYPIPSNALLCGRAVG 535 (538)
Q Consensus 475 ~g~~~irf~adnpG~w~~HCHil~H~d~GMm~~~~V~~p~~~~~~~~~~p~~~~~c~~~~~ 535 (538)
+||++|||++||||+|+|||||..|++.||.+.+.|.++.+.+.+++++|++.+.|+..++
T Consensus 483 ~Gw~vIRF~aDNPGvW~~HCHi~~H~~~g~~l~~~v~~~~~~~~~~~~~P~~~~~C~~~~~ 543 (552)
T PLN02354 483 KSWAAILLTFDNAGMWNIRSENWERRYLGQQLYASVLSPERSLRDEYNMPENALLCGKVKG 543 (552)
T ss_pred CCeEEEEEEecCCeEEeeeccccccccccceEEEEEeCCccccCcCCCCCccccccccccC
Confidence 9999999999999999999999999999999999999877666667789999999997775
No 4
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=100.00 E-value=1.7e-108 Score=875.59 Aligned_cols=515 Identities=50% Similarity=0.912 Sum_probs=416.1
Q ss_pred cccCCCeEEEEEEEEEEEecCCC--eeeEEEEEcCcCcCceEEEecCCEEEEEEEeCCCCCceeeeccccCCCCCCCCCC
Q 009283 20 TRGESPYRFFNWNVTYGDIYPLG--VKQQGILINGQFPGPSIEAVTNDNLIISVFNALDEPFLISWNGVQQRRNSWQDGV 97 (538)
Q Consensus 20 ~~~~~~~~~~~l~~~~~~~~~~G--~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~~~N~l~~~~siH~HG~~~~~~~~~DG~ 97 (538)
+.|++++++|+|++++..+.+|| ..+++++|||++|||+|++++||+|+|+|+|+|+++++|||||++|+.++++||+
T Consensus 21 ~~~~~~~~~y~~~v~~~~~~pdg~~~~~~vi~vNGq~PGPtI~~~~GD~v~V~V~N~L~~~ttIHWHGl~q~~t~w~DGv 100 (596)
T PLN00044 21 AGAGDPYAYYDWEVSYVSAAPLGGVKKQEAIGINGQFPGPALNVTTNWNLVVNVRNALDEPLLLTWHGVQQRKSAWQDGV 100 (596)
T ss_pred cccCCceEEEEEEEEEEEEccCCCceeeEEEEEcCcCCCCcEEEECCCEEEEEEEeCCCCCccEEECCccCCCCccccCC
Confidence 45667889999999999999998 4568999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCeEEEEEEecCCccceeeecCchhhhhcceeeEEEEecCCCCCCCCCCCC-CceEEEEeeecccChhhHH
Q 009283 98 YGTNCPIPPGKNFTYVLQVKDQIGSYFYFPSLAFHKAAGGYGGIKIASRPLIPVPFDPPA-GDFTILAGDWYKKNHTDLK 176 (538)
Q Consensus 98 ~~tq~~i~pG~~~~Y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~~-~e~~l~l~d~~~~~~~~~~ 176 (538)
++|||||+||++|+|+|++++|+||||||||++.|+++||+|+|||++++..+.||...+ +|.+|+++||++.+...+.
T Consensus 101 ~~TQcPI~PG~sftY~F~~~dq~GT~WYHsH~~~Q~~~Gl~GalII~~~~~~~~P~~~~~~~e~~i~l~DW~~~~~~~~~ 180 (596)
T PLN00044 101 GGTNCAIPAGWNWTYQFQVKDQVGSFFYAPSTALHRAAGGYGAITINNRDVIPIPFGFPDGGDITLFIADWYARDHRALR 180 (596)
T ss_pred CCCcCCcCCCCcEEEEEEeCCCCceeEeeccchhhhhCcCeeEEEEcCcccccccccCCcccceEEEecccccCCHHHHH
Confidence 889999999999999999977899999999999999999999999999876666665433 7999999999998876665
Q ss_pred HHhccCCCCCCCCeEEEcCCCCC------------CceEEEecCCEEEEEEEecCCCceEEEEEeCCeeEEEEEcCeecc
Q 009283 177 AILDSGSDLPFPDGLVINGRGSN------------ANTFTVDQGKTYRFRISNVGISTSINFRIQGHKMLLVEVEGTHTL 244 (538)
Q Consensus 177 ~~~~~~~~~~~~~~~liNG~~~~------------~p~~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~~ 244 (538)
..+..+.....++.++|||++.. .+.++|++||+|||||||++..+.+.|+|+||+|+||++||.+++
T Consensus 181 ~~l~~g~~~~~~d~~lING~g~~~~n~~~~~~~~~~~~i~V~~Gk~yRlRiINaa~~~~~~fsIdgH~mtVIa~DG~~v~ 260 (596)
T PLN00044 181 RALDAGDLLGAPDGVLINAFGPYQYNDSLVPPGITYERINVDPGKTYRFRVHNVGVATSLNFRIQGHNLLLVEAEGSYTS 260 (596)
T ss_pred HHHhcCCCCCCCCceEEcccCccccCCccccCCCccceEEECCCCEEEEEEEEccCCceEEEEECCCEEEEEEeCCcccC
Confidence 55555544567899999998641 247999999999999999999999999999999999999999999
Q ss_pred cceecEEEEcCCCeEEEEEEeCCCCc-ceEEEEEeecc----CCccceEEEEEecCCCCCCCCCCCCCC--Cccccchhh
Q 009283 245 QNTYDSLDIHLGQSYSVLVRADQPPQ-GYYIVISTRFT----SQVLSATSVLHYSNSAGSVSGPPPGGP--TTQIDWSLE 317 (538)
Q Consensus 245 p~~~~~v~l~pgeR~dv~v~~~~~~g-~y~i~~~~~~~----~~~~~~~ail~y~~~~~~~~~~~p~~P--~~~~~~~~~ 317 (538)
|..+++|.|++||||||+|+++++++ +|||++...+. .+...+.|||+|.++......+.|..| ..+...+..
T Consensus 261 P~~vd~i~I~~GQRydVLV~a~q~~~~~Y~i~a~~~~~~~~~~~~~~~~AIl~Y~~~~~~~~~~~P~~p~~~~d~~~~~~ 340 (596)
T PLN00044 261 QQNYTNLDIHVGQSYSFLLTMDQNASTDYYVVASARFVDAAVVDKLTGVAILHYSNSQGPASGPLPDAPDDQYDTAFSIN 340 (596)
T ss_pred ceeeeeEEEcCCceEEEEEECCCCCCCceEEEEecccccCccccCcceeEEEEECCCCCCCCCCCCCCCcccCCchhhhh
Confidence 99999999999999999999998765 89999865321 245678999999886532222234323 122222322
Q ss_pred hhhhhcccCCCCCCCCCCCCCCCccccccceEEEEecc-cCCCCCeEeEEECCeeecCCCCchhhhcccCCCCccccCCC
Q 009283 318 QARSLRRNLTASGPRPNPQGSYHYGLINTTHTIRLQNT-APTINGKQRYAVNSVSFIPADTPLKLADYFKIPGVFSVGSI 396 (538)
Q Consensus 318 ~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~iNg~~f~~p~~P~l~~~~~~~~g~~~~~~~ 396 (538)
....+..++......+.|..+..+......+.+.+... ....+|...|+|||++|..|++|+|++.+++..|.|..++.
T Consensus 341 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~s~Nnvsf~~p~~p~L~a~~~~~~gv~~~~fp 420 (596)
T PLN00044 341 QARSIRWNVTASGARPNPQGSFHYGDITVTDVYLLQSMAPELIDGKLRATLNEISYIAPSTPLMLAQIFNVPGVFKLDFP 420 (596)
T ss_pred hhHhhhhccCCCcCCCCCcccceeeEEeeeeeeeeccccccccCCeEEEEECcccCCCCCCcchhhhhccCCCcccCCCC
Confidence 33344433333222333332222212222222222110 11123568899999999999999998877777788775533
Q ss_pred CCCCCCCCcceeeEEEEccCCcEEEEEEEcCCCCCCCccccCCCceEEeecCCCCCCCCCCCcCCCCCCceeeEEeCCCC
Q 009283 397 PDNPTGGGAYLQTSVMAADFRGFAEVVFENPEDTLQSWHIDGHNFFAVGMDGGEWTPASRLTYNLRDTISRCTVQVYPKS 476 (538)
Q Consensus 397 ~~~p~~~~~~~~~~~~~~~~g~~v~~~l~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vp~~g 476 (538)
. .|........+.++.+++|++|||+|+|.....||||||||+|+||++|.|.|++.+++.||+.||++|||+.||++|
T Consensus 421 ~-~pp~~~~~~~t~v~~~~~n~~VeiV~qn~~~~~HP~HLHGh~F~Vvg~G~G~~~~~~~~~~Nl~nPp~RdTv~vp~~g 499 (596)
T PLN00044 421 N-HPMNRLPKLDTSIINGTYKGFMEIIFQNNATNVQSYHLDGYAFFVVGMDYGLWTDNSRGTYNKWDGVARSTIQVFPGA 499 (596)
T ss_pred C-CCCccccccCceEEEcCCCCEEEEEEeCCCCCCCCeeEcCccEEEEeecCCCCCCCcccccccCCCCccceEEeCCCC
Confidence 2 222223344678899999999999999987778999999999999999999999877778999999999999999999
Q ss_pred EEEEEEEccCcceeeeeecchhhhhcceEEEEEEecCCCc-CCccCCCCCchhccccccC
Q 009283 477 WTAVYVPLDNVGMWNIRSENWARQYLGQQFYLRVYSSANS-WRDEYPIPSNALLCGRAVG 535 (538)
Q Consensus 477 ~~~irf~adnpG~w~~HCHil~H~d~GMm~~~~V~~p~~~-~~~~~~~p~~~~~c~~~~~ 535 (538)
|++|||++||||.|+|||||+.|++.||+++|.|.++.+. ..+++++|++++.||..++
T Consensus 500 W~aIRF~aDNPG~W~lHCH~~~h~~~Gm~~~~~v~~~~~~~~~~~~~pP~~~~~Cg~~~~ 559 (596)
T PLN00044 500 WTAILVFLDNAGIWNLRVENLDAWYLGQEVYINVVNPEDNSNKTVLPIPDNAIFCGALSS 559 (596)
T ss_pred eEEEEEecCCCEEehhhccCchhhcccCcEEEEEecCCCCccccccCCCcccCccccccc
Confidence 9999999999999999999999999999999999876643 4567899999999987765
No 5
>PLN02792 oxidoreductase
Probab=100.00 E-value=4.7e-108 Score=869.27 Aligned_cols=514 Identities=64% Similarity=1.110 Sum_probs=420.7
Q ss_pred ccCCCeEEEEEEEEEEEecCCCeeeEEEEEcCcCcCceEEEecCCEEEEEEEeCCCCCceeeeccccCCCCCCCCCCCCC
Q 009283 21 RGESPYRFFNWNVTYGDIYPLGVKQQGILINGQFPGPSIEAVTNDNLIISVFNALDEPFLISWNGVQQRRNSWQDGVYGT 100 (538)
Q Consensus 21 ~~~~~~~~~~l~~~~~~~~~~G~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~~~N~l~~~~siH~HG~~~~~~~~~DG~~~t 100 (538)
...+++++|+|++++..+.+||+.+++++|||++|||+|++++||+|+|+|+|+|+++++|||||++|+.++|+||++++
T Consensus 11 ~~~~~~~~~~~~vt~~~~~pdg~~~~~~~vNGq~PGP~I~~~~GD~v~V~v~N~L~~~ttiHWHGl~q~~~~~~DGv~~t 90 (536)
T PLN02792 11 VKADDTLFYNWRVTYGNISLLTLPRRGILINGQFPGPEIRSLTNDNLVINVHNDLDEPFLLSWNGVHMRKNSYQDGVYGT 90 (536)
T ss_pred hhcCCeEEEEEEEEEEEeCCCCeEEEEEEECCCCCCCcEEEECCCEEEEEEEeCCCCCcCEeCCCcccCCCCccCCCCCC
Confidence 34445679999999999999999999999999999999999999999999999999999999999999999999999889
Q ss_pred CCCCCCCCeEEEEEEecCCccceeeecCchhhhhcceeeEEEEecCCCCCCCCCCCCCceEEEEeeecccChhhHHHHhc
Q 009283 101 NCPIPPGKNFTYVLQVKDQIGSYFYFPSLAFHKAAGGYGGIKIASRPLIPVPFDPPAGDFTILAGDWYKKNHTDLKAILD 180 (538)
Q Consensus 101 q~~i~pG~~~~Y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~l~d~~~~~~~~~~~~~~ 180 (538)
||||+||++|+|+|++++|+||||||||.+.|+.+||+|+|||.+++..+.+|+.+++|++++++||++.....+.+.+.
T Consensus 91 qcPI~PG~sftY~F~~~~q~GT~WYHsH~~~q~~~Gl~G~liI~~~~~~~~p~~~~d~e~~i~l~Dw~~~~~~~~~~~~~ 170 (536)
T PLN02792 91 TCPIPPGKNYTYDFQVKDQVGSYFYFPSLAVQKAAGGYGSLRIYSLPRIPVPFPEPAGDFTFLIGDWYRRNHTTLKKILD 170 (536)
T ss_pred cCccCCCCcEEEEEEeCCCccceEEecCcchhhhcccccceEEeCCcccCcCCCcccceeEEEecccccCCHHHHHHHhh
Confidence 99999999999999997789999999999999999999999998866555666667889999999999987766655555
Q ss_pred cCCCCC-CCCeEEEcCCCC-CCceEEEecCCEEEEEEEecCCCceEEEEEeCCeeEEEEEcCeecccceecEEEEcCCCe
Q 009283 181 SGSDLP-FPDGLVINGRGS-NANTFTVDQGKTYRFRISNVGISTSINFRIQGHKMLLVEVEGTHTLQNTYDSLDIHLGQS 258 (538)
Q Consensus 181 ~~~~~~-~~~~~liNG~~~-~~p~~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~~~v~l~pgeR 258 (538)
.+...+ .+|.+||||++. ..+.++|++||+|||||||+|..+.+.|+|+||+|+||++||.+++|..+++|.|+||||
T Consensus 171 ~g~~~~~~~d~~liNG~~~~~~~~~~v~~Gk~yRlRliNa~~~~~~~f~i~gH~~tVI~~DG~~v~p~~~~~l~i~~GqR 250 (536)
T PLN02792 171 GGRKLPLMPDGVMINGQGVSYVYSITVDKGKTYRFRISNVGLQTSLNFEILGHQLKLIEVEGTHTVQSMYTSLDIHVGQT 250 (536)
T ss_pred ccCcCCCCCCEEEEeccCCCCcceEEECCCCEEEEEEEEcCCCceEEEEECCcEEEEEEeCCccCCCcceeEEEEccCce
Confidence 444333 789999999974 247899999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCCCcceEEEEEeeccCCccceEEEEEecCCCCCCCCCCCCCC-CccccchhhhhhhhcccCCCCCCCCCCCC
Q 009283 259 YSVLVRADQPPQGYYIVISTRFTSQVLSATSVLHYSNSAGSVSGPPPGGP-TTQIDWSLEQARSLRRNLTASGPRPNPQG 337 (538)
Q Consensus 259 ~dv~v~~~~~~g~y~i~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~P-~~~~~~~~~~~~~~~~~l~~~~~~~~p~~ 337 (538)
|||+|++++++|+|||++...+......+.|||+|.++..... +.|..| ..+..++.......+..+.+..+.+.|..
T Consensus 251 ydVlV~a~~~~g~Y~i~a~~~~~~~~~~~~ail~Y~g~~~~~~-~~p~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~ 329 (536)
T PLN02792 251 YSVLVTMDQPPQNYSIVVSTRFIAAKVLVSSTLHYSNSKGHKI-IHARQPDPDDLEWSIKQAQSIRTNLTASGPRTNPQG 329 (536)
T ss_pred EEEEEEcCCCCceEEEEEEeccCCCCCceEEEEEECCCCCCCC-CCCCCCCcCCccccccchhhhhhccCCCCCCCCCCc
Confidence 9999999988899999998754444567899999998653211 112222 12222222222223333333223344443
Q ss_pred CCCccccccceEEEEecccCCCCCeEeEEECCeeecCCCCchhhhcccCCCCccccCCCCCCCCC-CCcceeeEEEEccC
Q 009283 338 SYHYGLINTTHTIRLQNTAPTINGKQRYAVNSVSFIPADTPLKLADYFKIPGVFSVGSIPDNPTG-GGAYLQTSVMAADF 416 (538)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~iNg~~f~~p~~P~l~~~~~~~~g~~~~~~~~~~p~~-~~~~~~~~~~~~~~ 416 (538)
+..+.....++++.+.......++...|+|||++|..|++|+|++.++++.|.+..+...+.|.. +....++.++.++.
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iN~~s~~~p~~p~L~a~~~~~~g~~~~~~~~~~p~~~~~~~~~~~v~~~~~ 409 (536)
T PLN02792 330 SYHYGKMKISRTLILESSAALVKRKQRYAINGVSFVPSDTPLKLADHFKIKGVFKVGSIPDKPRRGGGMRLDTSVMGAHH 409 (536)
T ss_pred ccccceeccceeEEecccccccCceeEEEECCcccCCCCCchhhhhhhccCCCcCcccCccCCcccCCCccCceEEEcCC
Confidence 33332233445554443222234567899999999999999998776666777765433333332 22334678889999
Q ss_pred CcEEEEEEEcCCCCCCCccccCCCceEEeecCCCCCCCCCCCcCCCCCCceeeEEeCCCCEEEEEEEccCcceeeeeecc
Q 009283 417 RGFAEVVFENPEDTLQSWHIDGHNFFAVGMDGGEWTPASRLTYNLRDTISRCTVQVYPKSWTAVYVPLDNVGMWNIRSEN 496 (538)
Q Consensus 417 g~~v~~~l~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adnpG~w~~HCHi 496 (538)
|++|||+|+|.....||||||||+||||++|.|.|++.....||+.+|++|||+.|+++||++|||++||||+|+||||+
T Consensus 410 ~~~VeiViqn~~~~~HP~HLHGh~F~Vvg~G~G~~~~~~~~~~Nl~nP~~RdTv~v~~~gw~aIRf~aDNPGvW~~HCh~ 489 (536)
T PLN02792 410 NAFLEIIFQNREKIVQSYHLDGYNFWVVGINKGIWSRASRREYNLKDAISRSTTQVYPESWTAVYVALDNVGMWNLRSQF 489 (536)
T ss_pred CCEEEEEEECCCCCCCCeeeCCCceEEEeecCCCCCcccccccCcCCCCccceEEECCCCEEEEEEEeeCCEEEeeeEcc
Confidence 99999999998878999999999999999999999887677899999999999999999999999999999999999999
Q ss_pred hhhhhcceEEEEEEecCCCcCCccCCCCCchhccccccC
Q 009283 497 WARQYLGQQFYLRVYSSANSWRDEYPIPSNALLCGRAVG 535 (538)
Q Consensus 497 l~H~d~GMm~~~~V~~p~~~~~~~~~~p~~~~~c~~~~~ 535 (538)
..|+..||+++|.|.++.+...+++++|+++++||..|+
T Consensus 490 ~~h~~~Gm~~~~~v~~~~~~~~~~~~pP~~~~~Cg~~~~ 528 (536)
T PLN02792 490 WARQYLGQQFYLRVYSPTHSLKDEYPLPKNALLCGRASN 528 (536)
T ss_pred hhccccceEEEEEEccCCCccccccCCCcccCccccccC
Confidence 999999999999998876666678899999999987765
No 6
>PLN02168 copper ion binding / pectinesterase
Probab=100.00 E-value=8.1e-108 Score=867.73 Aligned_cols=511 Identities=51% Similarity=0.894 Sum_probs=407.2
Q ss_pred CCCeEEEEEEEEEEEecCCCeeeEEEEEcCcCcCceEEEecCCEEEEEEEeCCCCCceeeeccccCCCCCCCCCCCCCCC
Q 009283 23 ESPYRFFNWNVTYGDIYPLGVKQQGILINGQFPGPSIEAVTNDNLIISVFNALDEPFLISWNGVQQRRNSWQDGVYGTNC 102 (538)
Q Consensus 23 ~~~~~~~~l~~~~~~~~~~G~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~~~N~l~~~~siH~HG~~~~~~~~~DG~~~tq~ 102 (538)
.+++++|+|++++..+.+||+.+++++|||++|||+|++++||+|+|+|+|+|+++|+|||||++|..++++||+++|||
T Consensus 23 ~a~~~~~~~~vt~~~~~pdG~~~~~~~vNG~~PGP~I~~~~GD~v~V~v~N~L~~~ttiHWHGl~~~~~~~~DGv~gtQc 102 (545)
T PLN02168 23 FAPIVSYQWVVSYSQRFILGGNKQVIVINDMFPGPLLNATANDVINVNIFNNLTEPFLMTWNGLQLRKNSWQDGVRGTNC 102 (545)
T ss_pred cccEEEEEEEEEEEEecCCCeEEEEEEECCcCCCCcEEEECCCEEEEEEEeCCCCCccEeeCCccCCCCCCcCCCCCCcC
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCeEEEEEEecCCccceeeecCchhhhhcceeeEEEEecCCCCCCCCCCCCCceEEEEeeecccChhhHHHHhccC
Q 009283 103 PIPPGKNFTYVLQVKDQIGSYFYFPSLAFHKAAGGYGGIKIASRPLIPVPFDPPAGDFTILAGDWYKKNHTDLKAILDSG 182 (538)
Q Consensus 103 ~i~pG~~~~Y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~l~d~~~~~~~~~~~~~~~~ 182 (538)
||+||++|+|+|++++++||||||||.+.|+.+||+|+|||++++..+.++..+++|++|+++||++.+...+...+..+
T Consensus 103 pI~PG~sftY~F~~~~q~GT~WYHsH~~~Q~~~GL~G~lII~~~~~~~~p~~~~d~e~~l~l~Dw~~~~~~~~~~~~~~g 182 (545)
T PLN02168 103 PILPGTNWTYRFQVKDQIGSYFYFPSLLLQKAAGGYGAIRIYNPELVPVPFPKPDEEYDILIGDWFYADHTVMRASLDNG 182 (545)
T ss_pred CCCCCCcEEEEEEeCCCCceEEEecChhhhhhCcceeEEEEcCCcccCcCcCcccceeeEEEEecCCCCHHHHHhhhhcC
Confidence 99999999999999768999999999999999999999999998766666666789999999999998755554444444
Q ss_pred CCCCCCCeEEEcCCCCCCceEEEecCCEEEEEEEecCCCceEEEEEeCCeeEEEEEcCeecccceecEEEEcCCCeEEEE
Q 009283 183 SDLPFPDGLVINGRGSNANTFTVDQGKTYRFRISNVGISTSINFRIQGHKMLLVEVEGTHTLQNTYDSLDIHLGQSYSVL 262 (538)
Q Consensus 183 ~~~~~~~~~liNG~~~~~p~~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~~~v~l~pgeR~dv~ 262 (538)
...+.+|.+||||++...+.++|++||+|||||||+|..+.+.|+|+||+|+||++||.+++|..++++.|++||||||+
T Consensus 183 ~~~~~~d~~liNG~~~~~~~~~v~~G~~yRlRiiNa~~~~~~~~~IdgH~~tVIa~DG~~v~p~~~~~l~i~~GqRydvl 262 (545)
T PLN02168 183 HSLPNPDGILFNGRGPEETFFAFEPGKTYRLRISNVGLKTCLNFRIQDHDMLLVETEGTYVQKRVYSSLDIHVGQSYSVL 262 (545)
T ss_pred CCCCCCCEEEEeccCCCcceEEeCCCCEEEEEEEeccCCceEEEEECCcEEEEEEECCeECCCceeeEEEEcCCceEEEE
Confidence 44567899999999755689999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCC-c---ceEEEEEeeccCCccceEEEEEecCCCCCCCCCCCCCCC-ccccchhhhhhhhcccCCCCCCCCCCCC
Q 009283 263 VRADQPP-Q---GYYIVISTRFTSQVLSATSVLHYSNSAGSVSGPPPGGPT-TQIDWSLEQARSLRRNLTASGPRPNPQG 337 (538)
Q Consensus 263 v~~~~~~-g---~y~i~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~P~-~~~~~~~~~~~~~~~~l~~~~~~~~p~~ 337 (538)
|++++++ | +|||++..........+.|+|+|+++......|.|..|. .+...+......+...+.+....+.|..
T Consensus 263 v~a~~~~~g~~~~Y~i~a~~~~~~~~~~~~ail~Y~~~~~~~~~p~p~~p~~~~~~~~~~~~~~~~~~l~p~~~~~~p~~ 342 (545)
T PLN02168 263 VTAKTDPVGIYRSYYIVATARFTDAYLGGVALIRYPNSPLDPVGPLPLAPALHDYFSSVEQALSIRMDLNVGAARSNPQG 342 (545)
T ss_pred EEcCCCCCCCcceEEEEEEecccCCCcceEEEEEECCCCCCCCCCCCCCCcccccccccchhhhhhhcCCCCCCCCCCcc
Confidence 9998644 4 899999875545557889999998765322223333232 1111111111122222332222233322
Q ss_pred CCCccccccceEEEEecccCCCCCeEeEEECCeeecCCCCchhhhcccCCCCccccCCCCCCCCCCCcceeeEEEEccCC
Q 009283 338 SYHYGLINTTHTIRLQNTAPTINGKQRYAVNSVSFIPADTPLKLADYFKIPGVFSVGSIPDNPTGGGAYLQTSVMAADFR 417 (538)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~iNg~~f~~p~~P~l~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~g 417 (538)
+..+.....++++.+.......+|...|+|||.+|..|++|++...++.+.+.+..+.....|.+.....++.++.++.|
T Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~iN~~s~~~p~~P~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~~~~~ 422 (545)
T PLN02168 343 SYHYGRINVTRTIILHNDVMLSSGKLRYTINGVSFVYPGTPLKLVDHFQLNDTIIPGMFPVYPSNKTPTLGTSVVDIHYK 422 (545)
T ss_pred cccccccccceeEEecccccccCceEEEEECCCccCCCCCchhhhhhcccccccccCCCccCCCcCccccCceEEEecCC
Confidence 22222223445554433111134567899999999999999987665544444333212222222222335678899999
Q ss_pred cEEEEEEEcCCCCCCCccccCCCceEEeecCCCCCCCCCCCcCCCCCCceeeEEeCCCCEEEEEEEccCcceeeeeecch
Q 009283 418 GFAEVVFENPEDTLQSWHIDGHNFFAVGMDGGEWTPASRLTYNLRDTISRCTVQVYPKSWTAVYVPLDNVGMWNIRSENW 497 (538)
Q Consensus 418 ~~v~~~l~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adnpG~w~~HCHil 497 (538)
++|||+|+|.....||||||||+||||++|.|.|++.....||+.+|++|||+.||++||++|||++||||.|+|||||.
T Consensus 423 ~~VeiViqn~~~~~HP~HLHGh~F~Vvg~g~g~~~~~~~~~~Nl~nP~rRDTv~vp~~Gw~vIRF~aDNPG~Wl~HCHi~ 502 (545)
T PLN02168 423 DFYHIVFQNPLFSLESYHIDGYNFFVVGYGFGAWSESKKAGYNLVDAVSRSTVQVYPYSWTAILIAMDNQGMWNVRSQKA 502 (545)
T ss_pred CEEEEEEeCCCCCCCCeeeCCCceEEEECCCCCCCccccccCCCCCCCccceEEeCCCCEEEEEEEccCCeEEeeeecCc
Confidence 99999999998789999999999999999999998766667999999999999999999999999999999999999999
Q ss_pred hhhhcceEEEEEEe-----cCCCc-CCccCCCCCchhccccc
Q 009283 498 ARQYLGQQFYLRVY-----SSANS-WRDEYPIPSNALLCGRA 533 (538)
Q Consensus 498 ~H~d~GMm~~~~V~-----~p~~~-~~~~~~~p~~~~~c~~~ 533 (538)
.|++.||++.+.|. +|++. ...++++|+++++||..
T Consensus 503 ~~~h~g~gl~~~v~~~~~e~p~~~~~~~~~~~P~~~~~cg~~ 544 (545)
T PLN02168 503 EQWYLGQELYMRVKGEGEEDPSTIPVRDENPIPGNVIRCGKV 544 (545)
T ss_pred ccceecCcEEEEEEcccccCccccccccccCCChhhcccccC
Confidence 99999999999884 34333 23467899999999843
No 7
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.3e-101 Score=811.56 Aligned_cols=520 Identities=48% Similarity=0.807 Sum_probs=453.8
Q ss_pred HhccccCCCeEEEEEEEEEEEecCCCeeeEEEEEcCcCcCceEEEecCCEEEEEEEeCCCCCceeeeccccCCCCCCCCC
Q 009283 17 VSCTRGESPYRFFNWNVTYGDIYPLGVKQQGILINGQFPGPSIEAVTNDNLIISVFNALDEPFLISWNGVQQRRNSWQDG 96 (538)
Q Consensus 17 ~~~~~~~~~~~~~~l~~~~~~~~~~G~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~~~N~l~~~~siH~HG~~~~~~~~~DG 96 (538)
.....+.++.+.|+|++++..+.++|..++++++||++|||+|+|++||+|.|+|.|+++++++|||||++|..++|+||
T Consensus 19 ~~~~~a~~~~~~~~~~v~~~~~s~l~~~~~vi~iNG~fPGP~I~~~~gD~ivV~v~N~~~~~~sihWhGv~q~kn~w~DG 98 (563)
T KOG1263|consen 19 VFFSQAEAPIRFHTWKVTYGTASPLCVEKQVITINGQFPGPTINAEEGDTIVVNVVNRLDEPFSIHWHGVRQRKNPWQDG 98 (563)
T ss_pred HHHhhhcCceEEEEeeEEeeeeccCCccceeEeecCCCCCCeEEEEeCCEEEEEEEeCCCCceEEEeccccccCCccccC
Confidence 33446777889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCeEEEEEEecCCccceeeecCchhhhhcceeeEEEEecCCCCCCCCCCCCCceEEEEeeeccc-ChhhH
Q 009283 97 VYGTNCPIPPGKNFTYVLQVKDQIGSYFYFPSLAFHKAAGGYGGIKIASRPLIPVPFDPPAGDFTILAGDWYKK-NHTDL 175 (538)
Q Consensus 97 ~~~tq~~i~pG~~~~Y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~l~d~~~~-~~~~~ 175 (538)
+.+|||||+||++|+|+|++++|.||||||+|++.|+++|++|+|||.++...+.|++.+++|++|+++||+.+ ....+
T Consensus 99 ~~~TqCPI~Pg~~~tY~F~v~~q~GT~~yh~h~~~~Ra~G~~G~liI~~~~~~p~pf~~pd~E~~ill~dW~~~~~~~~l 178 (563)
T KOG1263|consen 99 VYITQCPIQPGENFTYRFTVKDQIGTLWYHSHVSWQRATGVFGALIINPRPGLPVPFPKPDKEFTILLGDWYKNLNHKNL 178 (563)
T ss_pred CccccCCcCCCCeEEEEEEeCCcceeEEEeeccccccccCceeEEEEcCCccCCCCCCCCCceeEEEeEeeccccCHHHH
Confidence 43499999999999999999889999999999999999999999999999887778888999999999999996 77777
Q ss_pred HHHhccCCCCCC-CCeEEEcCCCCCC----ceEEEecCCEEEEEEEecCCCceEEEEEeCCeeEEEEEcCeecccceecE
Q 009283 176 KAILDSGSDLPF-PDGLVINGRGSNA----NTFTVDQGKTYRFRISNVGISTSINFRIQGHKMLLVEVEGTHTLQNTYDS 250 (538)
Q Consensus 176 ~~~~~~~~~~~~-~~~~liNG~~~~~----p~~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~~~ 250 (538)
...++.+...+. +|..+|||+.... +.++|++||+|||||+|+|......|+|++|+|+|+++||.+++|..+++
T Consensus 179 ~~~~~~~~~~p~~~D~~~iNg~~g~~~~~~~~l~v~pGktY~lRiiN~g~~~~l~F~I~~H~ltvVe~Dg~y~~p~~~~~ 258 (563)
T KOG1263|consen 179 KNFLDRTGALPNPSDGVLINGRSGFLYNCTPTLTVEPGKTYRLRIINAGLNTSLNFSIANHQLTVVEVDGAYTKPFTTDS 258 (563)
T ss_pred HHhhccCCCCCCCCCceEECCCCCcccCceeEEEEcCCCEEEEEEEccccccceEEEECCeEEEEEEecceEEeeeeece
Confidence 776666555444 8999999998433 78999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCeEEEEEEeCCCCcceEEEEEeeccCC----ccceEEEEEecCCCCCCCCCCC----CCCCccccchhhhhhhh
Q 009283 251 LDIHLGQSYSVLVRADQPPQGYYIVISTRFTSQ----VLSATSVLHYSNSAGSVSGPPP----GGPTTQIDWSLEQARSL 322 (538)
Q Consensus 251 v~l~pgeR~dv~v~~~~~~g~y~i~~~~~~~~~----~~~~~ail~y~~~~~~~~~~~p----~~P~~~~~~~~~~~~~~ 322 (538)
+.|.||||+||+|++++.+++|+|.+...+... .....++++|.++..+.+...+ .+|..+..++..+.+.+
T Consensus 259 l~i~~GQ~~~vLvtadq~~~~Y~i~~~~~~~~~~~~~~~t~~~~l~y~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~~ 338 (563)
T KOG1263|consen 259 LDIHPGQTYSVLLTADQSPGDYYIAASPYFDASNVPFNLTTTGILRYSGSTHPASEKLPIYPFLPPGNDTAWSTYQARSI 338 (563)
T ss_pred EEEcCCcEEEEEEeCCCCCCcEEEEEEeeeccCCcceeeeEEEEEEEeCCcccCcccCcccccCCcccCchhhhhhhhcc
Confidence 999999999999999999999999998876544 6789999999986544433322 22334556677777888
Q ss_pred cccCCCCCCCCCCCCCCCccccccceEEEEecccCCCCCeEeEEECCeeecCCCCchhhhcccCC-CCccccCCCCCCC-
Q 009283 323 RRNLTASGPRPNPQGSYHYGLINTTHTIRLQNTAPTINGKQRYAVNSVSFIPADTPLKLADYFKI-PGVFSVGSIPDNP- 400 (538)
Q Consensus 323 ~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~iNg~~f~~p~~P~l~~~~~~~-~g~~~~~~~~~~p- 400 (538)
+..+....+.++|.+...+....+.+.+.+..+....+++..++||+.+|..|++|.+++.++.. ++.++.++. +.|
T Consensus 339 r~~~~~~~~~~~P~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~siN~isf~~P~tp~~l~~~~~~~~~~~~~d~p-~~P~ 417 (563)
T KOG1263|consen 339 RSLLSASFARPVPQGSYHYGLITIGLTLKLCNSDNKNNGKLRASINNISFVTPKTPSLLAAYFKNIPGYFTNDFP-DKPP 417 (563)
T ss_pred cccccccCcccCCCccccccceeeeccEEeccCCCCCCcEEEEEEcceEEECCCCchhhhhhhccCCccccCccC-CCCc
Confidence 88888888889998877776666777777766544567889999999999999999998877654 555554333 344
Q ss_pred C--C-CCcceeeEEEEccCCcEEEEEEEcCCC---CCCCccccCCCceEEeecCCCCCC--CCCCCcCCCCCCceeeEEe
Q 009283 401 T--G-GGAYLQTSVMAADFRGFAEVVFENPED---TLQSWHIDGHNFFAVGMDGGEWTP--ASRLTYNLRDTISRCTVQV 472 (538)
Q Consensus 401 ~--~-~~~~~~~~~~~~~~g~~v~~~l~N~~~---~~HP~HlHG~~F~Vl~~~~g~~~~--~~~~~~~~~~p~~rDTv~v 472 (538)
. + .+.+.+++++++++++.||++|+|.+. ..||||||||+||||+.|.|.|++ +..+.||+.+|..||||.|
T Consensus 418 ~~~~~~~~~~~t~v~~~~~~~~veIVlqN~~~~~~~~hp~HLHG~~F~Vvg~g~G~~~~~~d~~~~yNl~dp~~R~Tv~V 497 (563)
T KOG1263|consen 418 IKFDYTGPTLGTSVMKLEFNSFVEIVLQNTSTGTQENHPNHLHGYNFYVVGYGFGNWDPAKDPRKKYNLVDPVSRDTVQV 497 (563)
T ss_pred cccCCccccccceEEEeecCCEEEEEEeCCccccCCCCccceeceEEEEEEecccccCcCcChhhhcccCCCcccceEEe
Confidence 2 1 124789999999999999999999874 458999999999999999999998 4447899999999999999
Q ss_pred CCCCEEEEEEEccCcceeeeeecchhhhhcceEEEEEEecCCCcCCccCCCCCchhccccccCCC
Q 009283 473 YPKSWTAVYVPLDNVGMWNIRSENWARQYLGQQFYLRVYSSANSWRDEYPIPSNALLCGRAVGHR 537 (538)
Q Consensus 473 p~~g~~~irf~adnpG~w~~HCHil~H~d~GMm~~~~V~~p~~~~~~~~~~p~~~~~c~~~~~~~ 537 (538)
||+||++|||.|||||+|+||||+.+|...||+++|.|.++++..+++.++|.+.++||..++..
T Consensus 498 ~pggw~aIrf~adNPG~W~~HCHie~H~~~G~~~~f~V~~~~~~~~~~~~~P~~~~~cg~~~~~~ 562 (563)
T KOG1263|consen 498 PPGGWTAIRFVADNPGVWLMHCHIEDHLYLGMETVFIVGNGEESLSSEYPPPKNLPKCGRASGIP 562 (563)
T ss_pred CCCCEEEEEEEcCCCcEEEEEEecHHHHhccCeEEEEEeCCCccCCcCCCCCCCcccccccCCcC
Confidence 99999999999999999999999999999999999999999988888899999999999988753
No 8
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=100.00 E-value=1.9e-99 Score=813.63 Aligned_cols=497 Identities=28% Similarity=0.476 Sum_probs=384.1
Q ss_pred CCeEEEEEEEEEEEecCCCeeeEEEEEcCcCcCceEEEecCCEEEEEEEeCCCCCceeeeccccCCCCCCCCCCCC-CCC
Q 009283 24 SPYRFFNWNVTYGDIYPLGVKQQGILINGQFPGPSIEAVTNDNLIISVFNALDEPFLISWNGVQQRRNSWQDGVYG-TNC 102 (538)
Q Consensus 24 ~~~~~~~l~~~~~~~~~~G~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~~~N~l~~~~siH~HG~~~~~~~~~DG~~~-tq~ 102 (538)
+++|+|+|+|+++.+.+||+.+++|+|||++|||+|++++||+|+|+|+|+|+++++|||||++|.+++++||+++ |||
T Consensus 1 ~~~r~y~~~it~~~~~pdG~~~~~~~~NG~~PGP~i~~~~GD~v~v~v~N~l~~~tsiHwHGl~q~~~~~~DGv~~vTq~ 80 (539)
T TIGR03389 1 AEVRHYTFDVQEKNVTRLCSTKSILTVNGKFPGPTLYAREGDTVIVNVTNNVQYNVTIHWHGVRQLRNGWADGPAYITQC 80 (539)
T ss_pred CceEEEEEEEEEEEeccCCcEeEEEEECCcccCCEEEEEcCCEEEEEEEeCCCCCeeEecCCCCCCCCCCCCCCcccccC
Confidence 3579999999999999999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred CCCCCCeEEEEEEecCCccceeeecCchhhhhcceeeEEEEecCCCCCCCCCCCCCceEEEEeeecccChhhHH-HHhcc
Q 009283 103 PIPPGKNFTYVLQVKDQIGSYFYFPSLAFHKAAGGYGGIKIASRPLIPVPFDPPAGDFTILAGDWYKKNHTDLK-AILDS 181 (538)
Q Consensus 103 ~i~pG~~~~Y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~l~d~~~~~~~~~~-~~~~~ 181 (538)
+|+||++|+|+|++.+++||||||||...|+ +||+|+|||++++..+.+++..|+|++|+++||++.....+. .....
T Consensus 81 pI~PG~s~~Y~f~~~~~~GT~WYHsH~~~~~-~Gl~G~lIV~~~~~~~~~~~~~d~e~~l~l~Dw~~~~~~~~~~~~~~~ 159 (539)
T TIGR03389 81 PIQPGQSYVYNFTITGQRGTLWWHAHISWLR-ATVYGAIVILPKPGVPYPFPKPDREVPIILGEWWNADVEAVINQANQT 159 (539)
T ss_pred CcCCCCeEEEEEEecCCCeeEEEecCchhhh-ccceEEEEEcCCCCCCCCCCCCCceEEEEecccccCCHHHHHHHHHhc
Confidence 9999999999999966899999999997665 599999999998765566667789999999999998755433 33333
Q ss_pred CCCCCCCCeEEEcCCCC--------CCceEEEecCCEEEEEEEecCCCceEEEEEeCCeeEEEEEcCeecccceecEEEE
Q 009283 182 GSDLPFPDGLVINGRGS--------NANTFTVDQGKTYRFRISNVGISTSINFRIQGHKMLLVEVEGTHTLQNTYDSLDI 253 (538)
Q Consensus 182 ~~~~~~~~~~liNG~~~--------~~p~~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~~~v~l 253 (538)
+....++|.++|||+.. ..+.++|++||+|||||||+|..+.+.|+|+||+|+||++||.+++|+.++++.|
T Consensus 160 ~~~~~~~d~~liNG~~~~~~~~~~~~~~~i~v~~G~~~RlRlINa~~~~~~~~~idgH~~~VIa~DG~~~~P~~~~~l~i 239 (539)
T TIGR03389 160 GGAPNVSDAYTINGHPGPLYNCSSKDTFKLTVEPGKTYLLRIINAALNDELFFAIANHTLTVVEVDATYTKPFKTKTIVI 239 (539)
T ss_pred CCCCCccceEEECCCcCCCCCCCCCCceEEEECCCCEEEEEEEeccCCceEEEEECCCeEEEEEeCCcccCceEeCeEEe
Confidence 44445779999999963 1358999999999999999999999999999999999999999999999999999
Q ss_pred cCCCeEEEEEEeCCCCcceEEEEEeeccC----CccceEEEEEecCCCCCCCCCCCCCCC-ccccchhhhhhhhcccCC-
Q 009283 254 HLGQSYSVLVRADQPPQGYYIVISTRFTS----QVLSATSVLHYSNSAGSVSGPPPGGPT-TQIDWSLEQARSLRRNLT- 327 (538)
Q Consensus 254 ~pgeR~dv~v~~~~~~g~y~i~~~~~~~~----~~~~~~ail~y~~~~~~~~~~~p~~P~-~~~~~~~~~~~~~~~~l~- 327 (538)
++||||||+|++++++|+|||++...... ....+.|+|+|.++........+..|. .+..........+. .+.
T Consensus 240 ~~GqRydVlv~a~~~~g~y~i~~~~~~~~~~~~~~~~~~ail~Y~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~-~~~~ 318 (539)
T TIGR03389 240 GPGQTTNVLLTADQSPGRYFMAARPYMDAPGAFDNTTTTAILQYKGTSNSAKPILPTLPAYNDTAAATNFSNKLR-SLNS 318 (539)
T ss_pred cCCCEEEEEEECCCCCceEEEEEeccccCccCCCCcceEEEEEECCCCCCCCCCCCCCCCCCchhhhhHHHhhcc-cccc
Confidence 99999999999998889999999754221 235689999998764311111111111 11100111000011 110
Q ss_pred CCCCCCCCCCCCCccccccceEEEEeccc----C------C-CCCeEeEEECCeeecCCCCchhhhcccCCCCccccCCC
Q 009283 328 ASGPRPNPQGSYHYGLINTTHTIRLQNTA----P------T-INGKQRYAVNSVSFIPADTPLKLADYFKIPGVFSVGSI 396 (538)
Q Consensus 328 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~----~------~-~~g~~~~~iNg~~f~~p~~P~l~~~~~~~~g~~~~~~~ 396 (538)
+..+...|. ..++++.+.... . . .+....|.|||++|..|++|+|.+.+.++.|.+..+..
T Consensus 319 ~~~~~~~p~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~in~~s~~~p~~p~l~~~~~~~~~~~~~~~~ 390 (539)
T TIGR03389 319 AQYPANVPV--------TIDRRLFFTIGLGLDPCPNNTCQGPNGTRFAASMNNISFVMPTTALLQAHYFGISGVFTTDFP 390 (539)
T ss_pred cCCCCCCCC--------CCCeEEEEEeecccccCcccccccCCCcEEEEEECCcccCCCCcchhhhhhcccCCccccCCc
Confidence 000101110 122222221110 0 0 12346899999999989999886655444443322111
Q ss_pred CCCCC-----------CCCcceeeEEEEccCCcEEEEEEEcCC---CCCCCccccCCCceEEeecCCCCCCCC-CCCcCC
Q 009283 397 PDNPT-----------GGGAYLQTSVMAADFRGFAEVVFENPE---DTLQSWHIDGHNFFAVGMDGGEWTPAS-RLTYNL 461 (538)
Q Consensus 397 ~~~p~-----------~~~~~~~~~~~~~~~g~~v~~~l~N~~---~~~HP~HlHG~~F~Vl~~~~g~~~~~~-~~~~~~ 461 (538)
...|. +...+.+++++.++.|++|||+|+|.+ ...||||||||+||||++|.|.|+... ...+|+
T Consensus 391 ~~~p~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~V~ivi~n~~~~~~~~HP~HLHGh~F~Vlg~g~g~~~~~~~~~~~nl 470 (539)
T TIGR03389 391 ANPPTKFNYTGTNLPNNLFTTNGTKVVRLKFNSTVELVLQDTSILGSENHPIHLHGYNFFVVGTGFGNFDPKKDPAKFNL 470 (539)
T ss_pred cCCCccccCCCCCcccccccccCceEEEecCCCEEEEEEecCCcCCCCCCcEeEcCCceEEEEeccCCCCcccCcccccc
Confidence 11110 001233677899999999999999975 348999999999999999988887542 246899
Q ss_pred CCCCceeeEEeCCCCEEEEEEEccCcceeeeeecchhhhhcceEEEEEEecCCCcCCccCCCCCchhcc
Q 009283 462 RDTISRCTVQVYPKSWTAVYVPLDNVGMWNIRSENWARQYLGQQFYLRVYSSANSWRDEYPIPSNALLC 530 (538)
Q Consensus 462 ~~p~~rDTv~vp~~g~~~irf~adnpG~w~~HCHil~H~d~GMm~~~~V~~p~~~~~~~~~~p~~~~~c 530 (538)
.+|++|||+.||++||++|||++||||.|+|||||.+|+..||+++|.+.+......+++++|+++++|
T Consensus 471 ~nP~rRDTv~vp~~g~vvirf~adNPG~W~~HCHi~~H~~~Gm~~~~~~~~~~~~~~~~~~~p~~~~~c 539 (539)
T TIGR03389 471 VDPPERNTVGVPTGGWAAIRFVADNPGVWFMHCHLEVHTTWGLKMAFLVDNGKGPNQSLLPPPSDLPSC 539 (539)
T ss_pred CCCCeeeeEEcCCCceEEEEEecCCCeEEEEEecccchhhhcceEEEEEccCCCCccccCCCCccCCCC
Confidence 999999999999999999999999999999999999999999999998865544445678999999999
No 9
>PLN02604 oxidoreductase
Probab=100.00 E-value=1.6e-97 Score=800.14 Aligned_cols=502 Identities=31% Similarity=0.548 Sum_probs=388.2
Q ss_pred HhccccCCCeEEEEEEEEEEEecCCCeeeEEEEEcCcCcCceEEEecCCEEEEEEEeCC-CCCceeeeccccCCCCCCCC
Q 009283 17 VSCTRGESPYRFFNWNVTYGDIYPLGVKQQGILINGQFPGPSIEAVTNDNLIISVFNAL-DEPFLISWNGVQQRRNSWQD 95 (538)
Q Consensus 17 ~~~~~~~~~~~~~~l~~~~~~~~~~G~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~~~N~l-~~~~siH~HG~~~~~~~~~D 95 (538)
.++..+.+++++|+|+++++.+.+||+.+.+|+|||++|||+|++++||+|+|+|+|++ +++++|||||+++.+++++|
T Consensus 15 ~~~~~~~~~~~~y~~~vt~~~~~pdG~~r~~~~~Ng~~pgP~i~~~~Gd~v~v~v~N~l~~~~~~iH~HG~~~~~~~~~D 94 (566)
T PLN02604 15 LNFPAAEARIRRYKWEVKYEYKSPDCFKKLVITINGRSPGPTILAQQGDTVIVELKNSLLTENVAIHWHGIRQIGTPWFD 94 (566)
T ss_pred HHhhhccCcEEEEEEEEEEEEECCCCceeeEEEECCccCCCcEEEECCCEEEEEEEeCCCCCCCCEEeCCCCCCCCcccc
Confidence 34556667899999999999999999999999999999999999999999999999998 58999999999999889999
Q ss_pred CCCC-CCCCCCCCCeEEEEEEecCCccceeeecCchhhhhcceeeEEEEecCCCCCCCCCCCCCceEEEEeeecccChhh
Q 009283 96 GVYG-TNCPIPPGKNFTYVLQVKDQIGSYFYFPSLAFHKAAGGYGGIKIASRPLIPVPFDPPAGDFTILAGDWYKKNHTD 174 (538)
Q Consensus 96 G~~~-tq~~i~pG~~~~Y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~l~d~~~~~~~~ 174 (538)
|+++ +||+|.||++++|+|++ +++||||||||.+.|+.+||+|+|||++++.++.++ .++.|.+|+|+||++....+
T Consensus 95 G~~~~tq~~i~pg~s~~y~f~~-~~~Gt~wyH~H~~~q~~~Gl~G~liV~~~~~~~~p~-~~d~d~~l~l~Dw~~~~~~~ 172 (566)
T PLN02604 95 GTEGVTQCPILPGETFTYEFVV-DRPGTYLYHAHYGMQREAGLYGSIRVSLPRGKSEPF-SYDYDRSIILTDWYHKSTYE 172 (566)
T ss_pred CCCccccCccCCCCeEEEEEEc-CCCEEEEEeeCcHHHHhCCCeEEEEEEecCCCCCcc-ccCcceEEEeeccccCCHHH
Confidence 9998 99999999999999999 589999999999999999999999999986555566 46889999999999987644
Q ss_pred HHHHhccC--CCCCCCCeEEEcCCCCC-----------------------CceEEEecCCEEEEEEEecCCCceEEEEEe
Q 009283 175 LKAILDSG--SDLPFPDGLVINGRGSN-----------------------ANTFTVDQGKTYRFRISNVGISTSINFRIQ 229 (538)
Q Consensus 175 ~~~~~~~~--~~~~~~~~~liNG~~~~-----------------------~p~~~v~~G~~~rlRliN~~~~~~~~~~l~ 229 (538)
........ ....+++..+|||++.. .+.++|++||+|||||||+|+.+.+.|+|+
T Consensus 173 ~~~~~~~~~~~~~~~~d~~liNG~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~RlRlINa~~~~~~~~sid 252 (566)
T PLN02604 173 QALGLSSIPFDWVGEPQSLLIQGKGRYNCSLVSSPYLKAGVCNATNPECSPYVLTVVPGKTYRLRISSLTALSALSFQIE 252 (566)
T ss_pred HHHhhccCCCccCCCCCceEEcCCCCCCCccccCccccccccccCCCCCCceEEEecCCCEEEEEEEeccccceEEEEEC
Confidence 33222211 11246789999998531 236899999999999999999999999999
Q ss_pred CCeeEEEEEcCeecccceecEEEEcCCCeEEEEEEeCCCCc-ceEEEEEeecc-CCccceEEEEEecCCCCCCCCC--CC
Q 009283 230 GHKMLLVEVEGTHTLQNTYDSLDIHLGQSYSVLVRADQPPQ-GYYIVISTRFT-SQVLSATSVLHYSNSAGSVSGP--PP 305 (538)
Q Consensus 230 gh~~~via~DG~~~~p~~~~~v~l~pgeR~dv~v~~~~~~g-~y~i~~~~~~~-~~~~~~~ail~y~~~~~~~~~~--~p 305 (538)
||+|+|||+||.+++|+++++|.|++||||||+|++++++| +||||+..... .+...+.|||+|.+.......+ .+
T Consensus 253 gH~~~VIa~DG~~v~P~~v~~l~l~~GqRydvlV~~~~~~~~~y~ira~~~~~~~~~~~~~aIL~Y~~~~~~~~~~~~~~ 332 (566)
T PLN02604 253 GHNMTVVEADGHYVEPFVVKNLFIYSGETYSVLVKADQDPSRNYWVTTSVVSRNNTTPPGLAIFNYYPNHPRRSPPTVPP 332 (566)
T ss_pred CCEEEEEEeCCEecccceeeeEEEccCCeEEEEEECCCCCCCCEEEEEecccCCCCCcceeEEEEECCCCCCCCCCCCCC
Confidence 99999999999999999999999999999999999998765 89999764322 2456789999998643211110 01
Q ss_pred CCCC-ccccchhhhhhhhcccCCCCCCCCCCCCCCCccccccceEEEEecccCCCCCeEeEEECCeeecCCCCchhhhcc
Q 009283 306 GGPT-TQIDWSLEQARSLRRNLTASGPRPNPQGSYHYGLINTTHTIRLQNTAPTINGKQRYAVNSVSFIPADTPLKLADY 384 (538)
Q Consensus 306 ~~P~-~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~iNg~~f~~p~~P~l~~~~ 384 (538)
..+. .+....+.+...+.. +... .. .+ ....++++.+.......++...|.|||.+|..|++|+|.+.+
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~-~~~~-~~-~~-------~~~~d~~~~~~~~~~~~~~~~~w~in~~~~~~p~~p~L~~~~ 402 (566)
T PLN02604 333 SGPLWNDVEPRLNQSLAIKA-RHGY-IH-PP-------PLTSDRVIVLLNTQNEVNGYRRWSVNNVSFNLPHTPYLIALK 402 (566)
T ss_pred CCCcccccchhhcchhcccc-cccC-cC-CC-------CCCCCeEEEEeccccccCCeEEEEECcccCCCCCCchhHhhh
Confidence 1111 000001110000000 0000 00 00 112344555432222234567899999999888999987765
Q ss_pred cCCCCccccCCCCCC-C----------CCCCcceeeEEEEccCCcEEEEEEEcCC------CCCCCccccCCCceEEeec
Q 009283 385 FKIPGVFSVGSIPDN-P----------TGGGAYLQTSVMAADFRGFAEVVFENPE------DTLQSWHIDGHNFFAVGMD 447 (538)
Q Consensus 385 ~~~~g~~~~~~~~~~-p----------~~~~~~~~~~~~~~~~g~~v~~~l~N~~------~~~HP~HlHG~~F~Vl~~~ 447 (538)
...++.++.+..... + .....+.+..++.++.|++||++|+|.+ ...||||||||+||||++|
T Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Vdivi~n~~~~~~~~~~~HP~HLHGH~F~Vlg~G 482 (566)
T PLN02604 403 ENLTGAFDQTPPPEGYDFANYDIYAKPNNSNATSSDSIYRLQFNSTVDIILQNANTMNANNSETHPWHLHGHDFWVLGYG 482 (566)
T ss_pred hcCCCcccCCCCCcccccccccccCCccccccccCceEEEccCCCeEEEEEECCccccCCCCCCCCEEecCCceEEEEec
Confidence 545566542211000 0 0012334567889999999999999985 3579999999999999999
Q ss_pred CCCCCCCC-CCCcCCCCCCceeeEEeCCCCEEEEEEEccCcceeeeeecchhhhhcceEEEEEEecCCCcCCccCCCCCc
Q 009283 448 GGEWTPAS-RLTYNLRDTISRCTVQVYPKSWTAVYVPLDNVGMWNIRSENWARQYLGQQFYLRVYSSANSWRDEYPIPSN 526 (538)
Q Consensus 448 ~g~~~~~~-~~~~~~~~p~~rDTv~vp~~g~~~irf~adnpG~w~~HCHil~H~d~GMm~~~~V~~p~~~~~~~~~~p~~ 526 (538)
.|.|++.. ...+|+.+|++|||+.|+++||++|||++||||.|+|||||++|+..||+++|... ++ +.+++|.+
T Consensus 483 ~G~~~~~~~~~~~nl~nP~rRDTv~vp~~gwvvIRF~aDNPG~WlfHCHI~~Hl~~GM~~v~~e~-~~----~~~~~p~~ 557 (566)
T PLN02604 483 EGKFNMSSDPKKYNLVDPIMKNTVPVHPYGWTALRFRADNPGVWAFHCHIESHFFMGMGVVFEEG-IE----RVGKLPSS 557 (566)
T ss_pred CCCCCccccccccCCCCCCccceEEeCCCceEEEEEECCCCeEeeEeecchhHhhcCCEEEEeeC-hh----hccCCCCC
Confidence 88887542 35689999999999999999999999999999999999999999999999999654 43 34689999
Q ss_pred hhccccccC
Q 009283 527 ALLCGRAVG 535 (538)
Q Consensus 527 ~~~c~~~~~ 535 (538)
++.|+.-++
T Consensus 558 ~~~C~~~~~ 566 (566)
T PLN02604 558 IMGCGESKG 566 (566)
T ss_pred cCccccCCC
Confidence 999987654
No 10
>PLN02191 L-ascorbate oxidase
Probab=100.00 E-value=1.3e-97 Score=798.76 Aligned_cols=495 Identities=30% Similarity=0.564 Sum_probs=379.1
Q ss_pred CCCeEEEEEEEEEEEecCCCeeeEEEEEcCcCcCceEEEecCCEEEEEEEeCCC-CCceeeeccccCCCCCCCCCCCC-C
Q 009283 23 ESPYRFFNWNVTYGDIYPLGVKQQGILINGQFPGPSIEAVTNDNLIISVFNALD-EPFLISWNGVQQRRNSWQDGVYG-T 100 (538)
Q Consensus 23 ~~~~~~~~l~~~~~~~~~~G~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~~~N~l~-~~~siH~HG~~~~~~~~~DG~~~-t 100 (538)
.+++++|+|++++..+.+||+++++++|||++|||+||+++||+|+|+|+|+|+ ++++|||||+++++++++||+++ +
T Consensus 20 ~~~~~~~~~~vt~~~~~pdG~~~~v~~vNg~~pGP~i~~~~Gd~v~v~v~N~l~~~~tsiHwHGl~~~~~~~~DGv~gvt 99 (574)
T PLN02191 20 SAAVREYTWEVEYKYWWPDCKEGAVMTVNGQFPGPTIDAVAGDTIVVHLTNKLTTEGLVIHWHGIRQKGSPWADGAAGVT 99 (574)
T ss_pred ccceEEEEEEEEEEEeccCCceeeEEEECCcCCCCeEEEEcCCEEEEEEEECCCCCCccEECCCCCCCCCccccCCCccc
Confidence 357899999999999999999999999999999999999999999999999998 78999999999999999999999 9
Q ss_pred CCCCCCCCeEEEEEEecCCccceeeecCchhhhhcceeeEEEEecCCCCCCCCCCCCCceEEEEeeecccChhhHHHHhc
Q 009283 101 NCPIPPGKNFTYVLQVKDQIGSYFYFPSLAFHKAAGGYGGIKIASRPLIPVPFDPPAGDFTILAGDWYKKNHTDLKAILD 180 (538)
Q Consensus 101 q~~i~pG~~~~Y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~l~d~~~~~~~~~~~~~~ 180 (538)
||||+||++|+|+|++ +++||||||||.+.|+.+||+|+|||+++.....++ .+|+|++|+++||++.........+.
T Consensus 100 q~pI~PG~s~~Y~f~~-~~~GT~wYHsH~~~q~~~Gl~G~liV~~~~~~~~~~-~~d~e~~l~l~Dw~~~~~~~~~~~~~ 177 (574)
T PLN02191 100 QCAINPGETFTYKFTV-EKPGTHFYHGHYGMQRSAGLYGSLIVDVAKGPKERL-RYDGEFNLLLSDWWHESIPSQELGLS 177 (574)
T ss_pred cCCcCCCCeEEEEEEC-CCCeEEEEeeCcHHHHhCCCEEEEEEccCCCCCCCC-CCCeeEEEeeeccccCChHHHHHhhc
Confidence 9999999999999999 589999999999999999999999999765433333 45899999999999976432221121
Q ss_pred c--CCCCCCCCeEEEcCCCCC-------------------------Cc-eEEEecCCEEEEEEEecCCCceEEEEEeCCe
Q 009283 181 S--GSDLPFPDGLVINGRGSN-------------------------AN-TFTVDQGKTYRFRISNVGISTSINFRIQGHK 232 (538)
Q Consensus 181 ~--~~~~~~~~~~liNG~~~~-------------------------~p-~~~v~~G~~~rlRliN~~~~~~~~~~l~gh~ 232 (538)
. .....++++++|||++.. .| .++|++||+|||||||+|+.+.+.|+|+||+
T Consensus 178 ~~~~~~~~~~d~~liNG~g~~~~~~~~~~~~~~~~~~~~~~~n~~~~p~~~~v~~G~~yRlRiINa~~~~~~~~~idgH~ 257 (574)
T PLN02191 178 SKPMRWIGEAQSILINGRGQFNCSLAAQFSNGTELPMCTFKEGDQCAPQTLRVEPNKTYRIRLASTTALASLNLAVQGHK 257 (574)
T ss_pred cCCCCcCCCCCceEECCCCCCCCcccccccCCcccccceeccCCCCCceEEEEcCCCEEEEEEEecCCceeEEEEECCCe
Confidence 1 112246788999998631 12 5999999999999999999999999999999
Q ss_pred eEEEEEcCeecccceecEEEEcCCCeEEEEEEeCCCC-cceEEEEEeeccC-CccceEEEEEecCCCCCC--CCCCCCCC
Q 009283 233 MLLVEVEGTHTLQNTYDSLDIHLGQSYSVLVRADQPP-QGYYIVISTRFTS-QVLSATSVLHYSNSAGSV--SGPPPGGP 308 (538)
Q Consensus 233 ~~via~DG~~~~p~~~~~v~l~pgeR~dv~v~~~~~~-g~y~i~~~~~~~~-~~~~~~ail~y~~~~~~~--~~~~p~~P 308 (538)
|+|||+||.+++|+++++|.|++||||||+|++++++ ++||||+...... ......|+|+|.+..... +.+.|..|
T Consensus 258 ~tVIa~DG~~v~P~~v~~l~i~~GqRydVlV~a~~~~~~~y~ira~~~~~~~~~~~~~ail~Y~~~~~~~~p~~~~~~~p 337 (574)
T PLN02191 258 LVVVEADGNYITPFTTDDIDIYSGESYSVLLTTDQDPSQNYYISVGVRGRKPNTTQALTILNYVTAPASKLPSSPPPVTP 337 (574)
T ss_pred EEEEEcCCeeccceEeeeEEEcCCCeEEEEEECCCCCCCCEEEEEEccccCCCCCCceEEEEECCCCCCCCCCCCCCCCC
Confidence 9999999999999999999999999999999999876 5899999764321 123457999998754321 11111111
Q ss_pred C-ccccchhhhhhhhcccCCCCCCCCCCCCCCCccccccceEEEEecccCCCCCeEeEEECCeeecCCCCchhhhcccCC
Q 009283 309 T-TQIDWSLEQARSLRRNLTASGPRPNPQGSYHYGLINTTHTIRLQNTAPTINGKQRYAVNSVSFIPADTPLKLADYFKI 387 (538)
Q Consensus 309 ~-~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~iNg~~f~~p~~P~l~~~~~~~ 387 (538)
. .+.. ........+......+.+.. ...+..+.+... ....+..+|.+||.+|..|.+|+|.+.+.+.
T Consensus 338 ~~~~~~----~~~~~~~~~~~~~~~~~~p~------~~~~~~~~~~~~-~~~~~~~~~~~n~~s~~~p~~P~L~~~~~~~ 406 (574)
T PLN02191 338 RWDDFE----RSKNFSKKIFSAMGSPSPPK------KYRKRLILLNTQ-NLIDGYTKWAINNVSLVTPATPYLGSVKYNL 406 (574)
T ss_pred cccccc----hhhcccccccccccCCCCCC------cccceEEEeccc-ceeCCeEEEEECcccCcCCCcchHHHHhhcc
Confidence 1 1110 00111111111000111110 012333333221 1123456899999999989999988765544
Q ss_pred CCccccCCCC-C--------CCCC-CCcceeeEEEEccCCcEEEEEEEcCC------CCCCCccccCCCceEEeecCCCC
Q 009283 388 PGVFSVGSIP-D--------NPTG-GGAYLQTSVMAADFRGFAEVVFENPE------DTLQSWHIDGHNFFAVGMDGGEW 451 (538)
Q Consensus 388 ~g~~~~~~~~-~--------~p~~-~~~~~~~~~~~~~~g~~v~~~l~N~~------~~~HP~HlHG~~F~Vl~~~~g~~ 451 (538)
++.++.+... . .+.. ...+.++.++.++.|++|||+|+|.+ ...||||||||+||||++|.|.|
T Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Vdivi~n~~~~~~~~~~~HP~HLHGh~F~Vlg~G~g~~ 486 (574)
T PLN02191 407 KLGFNRKSPPRSYRMDYDIMNPPPFPNTTTGNGIYVFPFNVTVDVIIQNANVLKGVVSEIHPWHLHGHDFWVLGYGDGKF 486 (574)
T ss_pred CcccccCCCcccccccccccCCCccccccccceeEEecCCCEEEEEEECCCcccCCCCCCCCEEeCCCCeEEEEecCCCC
Confidence 4443322100 0 0000 01234667889999999999999985 56899999999999999999999
Q ss_pred CCC-CCCCcCCCCCCceeeEEeCCCCEEEEEEEccCcceeeeeecchhhhhcceEEEEEEecCCCcCCccCCCCCchhcc
Q 009283 452 TPA-SRLTYNLRDTISRCTVQVYPKSWTAVYVPLDNVGMWNIRSENWARQYLGQQFYLRVYSSANSWRDEYPIPSNALLC 530 (538)
Q Consensus 452 ~~~-~~~~~~~~~p~~rDTv~vp~~g~~~irf~adnpG~w~~HCHil~H~d~GMm~~~~V~~p~~~~~~~~~~p~~~~~c 530 (538)
++. ....+|+.+|++|||+.||++||++|||++||||.|+|||||.+|...||+++|. +.+++ ++++|++++.|
T Consensus 487 ~~~~~~~~~nl~nP~rRDTv~vp~~Gw~vIRf~aDNPG~Wl~HCHi~~Hl~~Gm~~~~~-e~~~~----~~~~p~~~~~C 561 (574)
T PLN02191 487 KPGIDEKTYNLKNPPLRNTAILYPYGWTAIRFVTDNPGVWFFHCHIEPHLHMGMGVVFA-EGLNR----IGKIPDEALGC 561 (574)
T ss_pred CcccCcccccCCCCCcCCeEEeCCCCEEEEEEECCCCEEEEEecCchhhhhcCCEEEEe-cChhh----ccCCCcchhhh
Confidence 863 2246899999999999999999999999999999999999999999999999994 44433 35589999999
Q ss_pred ccccC
Q 009283 531 GRAVG 535 (538)
Q Consensus 531 ~~~~~ 535 (538)
+.++.
T Consensus 562 ~~~~~ 566 (574)
T PLN02191 562 GLTKQ 566 (574)
T ss_pred hcccc
Confidence 98764
No 11
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=100.00 E-value=1.6e-96 Score=790.27 Aligned_cols=488 Identities=32% Similarity=0.583 Sum_probs=378.3
Q ss_pred eEEEEEEEEEEEecCCCeeeEEEEEcCcCcCceEEEecCCEEEEEEEeCCC-CCceeeeccccCCCCCCCCCCCC-CCCC
Q 009283 26 YRFFNWNVTYGDIYPLGVKQQGILINGQFPGPSIEAVTNDNLIISVFNALD-EPFLISWNGVQQRRNSWQDGVYG-TNCP 103 (538)
Q Consensus 26 ~~~~~l~~~~~~~~~~G~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~~~N~l~-~~~siH~HG~~~~~~~~~DG~~~-tq~~ 103 (538)
+|+|+|+++++.+++||+.+.+|+|||++|||+|++++||+|+|+|+|+|+ ++++|||||+++.+++++||+++ +||+
T Consensus 1 ~~~y~~~vt~~~~~pdG~~~~~~~~Ng~~pGP~i~~~~Gd~v~v~v~N~l~~~~t~iHwHGl~~~~~~~~DG~~~vtq~~ 80 (541)
T TIGR03388 1 IRHYKWEVEYEFWSPDCFEKLVIGINGQFPGPTIRAQAGDTIVVELTNKLHTEGVVIHWHGIRQIGTPWADGTAGVTQCA 80 (541)
T ss_pred CEEEEEEEEEEEecCCCeEeeEEEECCcCCCCeEEEEcCCEEEEEEEECCCCCCccEEecCcCCcCCcccCCCCccccCC
Confidence 478999999999999999999999999999999999999999999999995 88999999999999999999998 9999
Q ss_pred CCCCCeEEEEEEecCCccceeeecCchhhhhcceeeEEEEecCCCCCCCCCCCCCceEEEEeeecccChhhHHHHhcc-C
Q 009283 104 IPPGKNFTYVLQVKDQIGSYFYFPSLAFHKAAGGYGGIKIASRPLIPVPFDPPAGDFTILAGDWYKKNHTDLKAILDS-G 182 (538)
Q Consensus 104 i~pG~~~~Y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~l~d~~~~~~~~~~~~~~~-~ 182 (538)
|+||++|+|+|++ +++||||||||.+.|+.+||+|+|||+++..++.++ .+|+|++|+|+||+++........... .
T Consensus 81 I~PG~s~~y~f~~-~~~Gt~wyH~H~~~q~~~Gl~G~liV~~~~~~~~p~-~~d~e~~l~l~Dw~~~~~~~~~~~~~~~~ 158 (541)
T TIGR03388 81 INPGETFIYNFVV-DRPGTYFYHGHYGMQRSAGLYGSLIVDVPDGEKEPF-HYDGEFNLLLSDWWHKSIHEQEVGLSSKP 158 (541)
T ss_pred cCCCCEEEEEEEc-CCCEEEEEEecchHHhhccceEEEEEecCCCCCCCc-cccceEEEEeecccCCCHHHHHhhcccCC
Confidence 9999999999999 589999999999999999999999999986545555 458999999999999875433222211 1
Q ss_pred -CCCCCCCeEEEcCCCCC------------------------C-ceEEEecCCEEEEEEEecCCCceEEEEEeCCeeEEE
Q 009283 183 -SDLPFPDGLVINGRGSN------------------------A-NTFTVDQGKTYRFRISNVGISTSINFRIQGHKMLLV 236 (538)
Q Consensus 183 -~~~~~~~~~liNG~~~~------------------------~-p~~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~vi 236 (538)
.....++.++|||++.. . ..++|++|++|||||||+|..+.+.|+|++|+|+||
T Consensus 159 ~~~~~~~d~~liNG~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~RlRliNa~~~~~~~~~id~h~~~VI 238 (541)
T TIGR03388 159 MRWIGEPQSLLINGRGQFNCSLAAKFSSTNLPQCNLKGNEQCAPQILHVEPGKTYRLRIASTTALAALNFAIEGHKLTVV 238 (541)
T ss_pred CcCCCCCcceEECCCCCCCCccccccCccccchhhccCCCCCCceEEEECCCCEEEEEEEcccccceEEEEECCCEEEEE
Confidence 11246789999998531 1 348999999999999999999999999999999999
Q ss_pred EEcCeecccceecEEEEcCCCeEEEEEEeCCCC-cceEEEEEeecc-CCccceEEEEEecCCCCCC--CCCCCCCCC-cc
Q 009283 237 EVEGTHTLQNTYDSLDIHLGQSYSVLVRADQPP-QGYYIVISTRFT-SQVLSATSVLHYSNSAGSV--SGPPPGGPT-TQ 311 (538)
Q Consensus 237 a~DG~~~~p~~~~~v~l~pgeR~dv~v~~~~~~-g~y~i~~~~~~~-~~~~~~~ail~y~~~~~~~--~~~~p~~P~-~~ 311 (538)
|+||.+++|.+++++.|++||||||+|++++.+ |+|||++..... .+...+.|+|+|.+..... ..+.+..|. .+
T Consensus 239 a~DG~~v~P~~v~~l~i~~GqR~dvlv~~~~~~~~~y~ira~~~~~~~~~~~~~aiL~Y~~~~~~~~p~~~~~~~p~~~~ 318 (541)
T TIGR03388 239 EADGNYVEPFTVKDIDIYSGETYSVLLTTDQDPSRNYWISVGVRGRKPNTPPGLTVLNYYPNSPSRLPPTPPPVTPAWDD 318 (541)
T ss_pred EeCCEecccceeCeEEecCCCEEEEEEeCCCCCCCcEEEEEecccCCCCCccEEEEEEECCCCCCCCCCCCCCCCCCccc
Confidence 999999999999999999999999999998766 589999876433 2234688999998754321 111111121 11
Q ss_pred ccchhhhhhhhcccCCCCCCCCCCCCCCCccccccceEEEEecccCCCCCeEeEEECCeeecCCCCchhhhcccCCCCcc
Q 009283 312 IDWSLEQARSLRRNLTASGPRPNPQGSYHYGLINTTHTIRLQNTAPTINGKQRYAVNSVSFIPADTPLKLADYFKIPGVF 391 (538)
Q Consensus 312 ~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~iNg~~f~~p~~P~l~~~~~~~~g~~ 391 (538)
.... ......+......+.+. ...++++.+.......++...|++||.+|..|.+|+|.+.+++..+.+
T Consensus 319 ~~~~----~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~n~~s~~~p~~p~l~~~~~~~~~~~ 387 (541)
T TIGR03388 319 FDRS----KAFSLAIKAAMGSPKPP-------ETSDRRIVLLNTQNKINGYTKWAINNVSLTLPHTPYLGSLKYNLLNAF 387 (541)
T ss_pred cchh----hccchhhhccccCCCCC-------CCCCcEEEEeccCcccCceEEEEECcccCCCCCccHHHHHhhcCCccc
Confidence 0000 00000110000011111 122344433222111245567999999998889999887655444443
Q ss_pred ccCCCC----------CCCCCCCcceeeEEEEccCCcEEEEEEEcCC------CCCCCccccCCCceEEeecCCCCCCC-
Q 009283 392 SVGSIP----------DNPTGGGAYLQTSVMAADFRGFAEVVFENPE------DTLQSWHIDGHNFFAVGMDGGEWTPA- 454 (538)
Q Consensus 392 ~~~~~~----------~~p~~~~~~~~~~~~~~~~g~~v~~~l~N~~------~~~HP~HlHG~~F~Vl~~~~g~~~~~- 454 (538)
+..... ..+.....+.|+.++.++.|++||++|+|.+ ...||||||||+||||++|.|.|+..
T Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Vdivi~n~~~~~~~~~~~HP~HLHGh~F~vlg~g~g~~~~~~ 467 (541)
T TIGR03388 388 DQKPPPENYPRDYDIFKPPPNPNTTTGNGIYRLKFNTTVDVILQNANTLNGNNSETHPWHLHGHDFWVLGYGEGKFRPGV 467 (541)
T ss_pred cCCCCcccccccccccCCCcccccccCceEEEecCCCeEEEEEECCccccCCCCCCCcEEecCCceEEEeeccCCCCccc
Confidence 321100 0011123455778899999999999999974 35799999999999999998888754
Q ss_pred CCCCcCCCCCCceeeEEeCCCCEEEEEEEccCcceeeeeecchhhhhcceEEEEEEecCCCcCCccCCCCCchhccc
Q 009283 455 SRLTYNLRDTISRCTVQVYPKSWTAVYVPLDNVGMWNIRSENWARQYLGQQFYLRVYSSANSWRDEYPIPSNALLCG 531 (538)
Q Consensus 455 ~~~~~~~~~p~~rDTv~vp~~g~~~irf~adnpG~w~~HCHil~H~d~GMm~~~~V~~p~~~~~~~~~~p~~~~~c~ 531 (538)
....+|+.+|++|||+.||++||++|||++||||.|+|||||++|+..||+++|... +++ .+++|++++.|+
T Consensus 468 ~~~~~n~~nP~~RDTv~vp~~gwvvIRF~adNPG~W~~HCHi~~H~~~GM~~~~~e~-~~~----~~~~P~~~~~C~ 539 (541)
T TIGR03388 468 DEKSYNLKNPPLRNTVVIFPYGWTALRFVADNPGVWAFHCHIEPHLHMGMGVVFAEG-VEK----VGKLPKEALGCG 539 (541)
T ss_pred CcccccCCCCCEeceEEeCCCceEEEEEECCCCeEeeeeccchhhhhcccEEEEecc-ccc----cCCCCccccCCC
Confidence 234689999999999999999999999999999999999999999999999999653 432 467999999998
No 12
>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type. This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.
Probab=100.00 E-value=5.4e-94 Score=768.45 Aligned_cols=478 Identities=23% Similarity=0.386 Sum_probs=366.1
Q ss_pred EEEEEEEEEEecCCCeeeEEEEEcCcCcCceEEEecCCEEEEEEEeCCC-CCceeeeccccCCCCCCCCCCCC-CCCCCC
Q 009283 28 FFNWNVTYGDIYPLGVKQQGILINGQFPGPSIEAVTNDNLIISVFNALD-EPFLISWNGVQQRRNSWQDGVYG-TNCPIP 105 (538)
Q Consensus 28 ~~~l~~~~~~~~~~G~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~~~N~l~-~~~siH~HG~~~~~~~~~DG~~~-tq~~i~ 105 (538)
.|+|++++..+.+||+.+.+++|||++|||+|++++||+|+|+|+|+|+ ++++|||||++|+.++++||+|+ |||||+
T Consensus 10 ~~~l~v~~~~~~~~g~~r~~~~~NG~~PGP~I~~~~GD~v~V~v~N~L~~~~ttiHwHGi~~~~~~~~DGvp~vTQcpI~ 89 (538)
T TIGR03390 10 DHILRVTSDNIKIACSSRYSVVVNGTSPGPEIRLQEGQTTWIRVYNDIPDNNVTMHWHGLTQRTAPFSDGTPLASQWPIP 89 (538)
T ss_pred cEEEEEEEeEeccCCeEEEEEEECCcCCCCeEEEeCCCEEEEEEEECCCCCCceEECCCCCCCCCCCCCCCcccccCCCC
Confidence 5899999999999999999999999999999999999999999999997 89999999999999999999999 999999
Q ss_pred CCCeEEEEEEec-CCccceeeecCchhhhhcceeeEEEEecCCCCCCCCCCCCCceEEEEeeecccChhhHHHHhccC--
Q 009283 106 PGKNFTYVLQVK-DQIGSYFYFPSLAFHKAAGGYGGIKIASRPLIPVPFDPPAGDFTILAGDWYKKNHTDLKAILDSG-- 182 (538)
Q Consensus 106 pG~~~~Y~f~~~-~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~l~d~~~~~~~~~~~~~~~~-- 182 (538)
||++|+|+|+++ +++||||||||.+.|+. ||+|+|||++++.. ++ .+|+|++|+|+||+++..+.+...+...
T Consensus 90 PG~sf~Y~f~~~~~q~GT~WYHsH~~~Q~~-~l~G~lIV~~~~~~--~~-~~d~e~~l~l~Dw~~~~~~~~~~~~~~~~~ 165 (538)
T TIGR03390 90 PGHFFDYEIKPEPGDAGSYFYHSHVGFQAV-TAFGPLIVEDCEPP--PY-KYDDERILLVSDFFSATDEEIEQGLLSTPF 165 (538)
T ss_pred CCCcEEEEEEecCCCCeeeEEecCCchhhh-cceeEEEEccCCcc--CC-CccCcEEEEEeCCCCCCHHHHHhhhhccCC
Confidence 999999999985 58999999999999986 59999999987543 33 3488999999999999876654433222
Q ss_pred CCCCCCCeEEEcCCCCC--------------CceEEEecCCEEEEEEEecCCCceEEEEEeCCe-eEEEEEcCeecccce
Q 009283 183 SDLPFPDGLVINGRGSN--------------ANTFTVDQGKTYRFRISNVGISTSINFRIQGHK-MLLVEVEGTHTLQNT 247 (538)
Q Consensus 183 ~~~~~~~~~liNG~~~~--------------~p~~~v~~G~~~rlRliN~~~~~~~~~~l~gh~-~~via~DG~~~~p~~ 247 (538)
.....++.++|||+... .+.++|++||+|||||||+|..+.+.|+|++|+ |+|||+||.+++|+.
T Consensus 166 ~~~~~~d~~liNG~~~~~~~~~~~~~~~~~~~~~~~v~~G~~yRlRlINa~~~~~~~~~idgH~~~~VIa~DG~~~~P~~ 245 (538)
T TIGR03390 166 TWSGETEAVLLNGKSGNKSFYAQINPSGSCMLPVIDVEPGKTYRLRFIGATALSLISLGIEDHENLTIIEADGSYTKPAK 245 (538)
T ss_pred ccCCCCceEEECCccccccccccccCCCCCcceEEEECCCCEEEEEEEccCCceEEEEEECCCCeEEEEEeCCCCCCceE
Confidence 11345789999999631 368999999999999999999999999999999 999999999999999
Q ss_pred ecEEEEcCCCeEEEEEEeCCC-------CcceEEEEEeeccCCccceEEEEEecCCCCCCCCCCCCCCCccccchhhhhh
Q 009283 248 YDSLDIHLGQSYSVLVRADQP-------PQGYYIVISTRFTSQVLSATSVLHYSNSAGSVSGPPPGGPTTQIDWSLEQAR 320 (538)
Q Consensus 248 ~~~v~l~pgeR~dv~v~~~~~-------~g~y~i~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~P~~~~~~~~~~~~ 320 (538)
++++.|++||||||+|+++++ +|+||||+.....++...+.|+|+|.++........|..|..........+.
T Consensus 246 v~~l~l~~GqRydVlv~~~~~~~~~~~~~~~Y~ir~~~~~~~~~~~~~aiL~Y~~~~~~~~~~~p~~~~~~~~~~~~~~~ 325 (538)
T TIGR03390 246 IDHLQLGGGQRYSVLFKAKTEDELCGGDKRQYFIQFETRDRPKVYRGYAVLRYRSDKASKLPSVPETPPLPLPNSTYDWL 325 (538)
T ss_pred eCeEEEccCCEEEEEEECCCccccccCCCCcEEEEEeecCCCCcceEEEEEEeCCCCCCCCCCCCCCCCCCccCcchhhh
Confidence 999999999999999999964 4899999976544455678999999865422111111111100000000011
Q ss_pred hhcccCCCCCCCCCCCCCCCccccccceEEEEecccC--CCCCeEeEEECCeeecC--CCCchhhhcccCCCCccccCCC
Q 009283 321 SLRRNLTASGPRPNPQGSYHYGLINTTHTIRLQNTAP--TINGKQRYAVNSVSFIP--ADTPLKLADYFKIPGVFSVGSI 396 (538)
Q Consensus 321 ~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~--~~~g~~~~~iNg~~f~~--p~~P~l~~~~~~~~g~~~~~~~ 396 (538)
+ ..+.+......+. +. .....++++.+..... ..++...|++||++|.. +++|+|...+.+. .......
T Consensus 326 ~--~~l~pl~~~~~~~--~~-~~~~~d~~~~l~~~~~~~~~~g~~~~~~N~~s~~~~~~~~P~L~~~~~~~--~~~~~~~ 398 (538)
T TIGR03390 326 E--YELEPLSEENNQD--FP-TLDEVTRRVVIDAHQNVDPLNGRVAWLQNGLSWTESVRQTPYLVDIYENG--LPATPNY 398 (538)
T ss_pred h--eeeEecCccccCC--CC-CCCcCceEEEEEccccccccCCeEEEEECCcccCCCCCCCchHHHHhcCC--CCcCCCc
Confidence 1 1122111100000 00 0113455555544322 12467889999999985 7899987654211 0000000
Q ss_pred CCCCCCCCcceeeEEEEccCCcEEEEEEEcCC--------CCCCCccccCCCceEEeecCCCCCCCC-CCCcCCCCCCce
Q 009283 397 PDNPTGGGAYLQTSVMAADFRGFAEVVFENPE--------DTLQSWHIDGHNFFAVGMDGGEWTPAS-RLTYNLRDTISR 467 (538)
Q Consensus 397 ~~~p~~~~~~~~~~~~~~~~g~~v~~~l~N~~--------~~~HP~HlHG~~F~Vl~~~~g~~~~~~-~~~~~~~~p~~r 467 (538)
...+........+.++.++.|++|||+|+|.. ...||||||||+||||++|.|.|++.. ...+++.+|.+|
T Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~V~ivi~n~~~~~~~~~~~~~HP~HlHGh~F~vlg~G~G~~~~~~~~~~~nl~nP~rR 478 (538)
T TIGR03390 399 TAALANYGFDPETRAFPAKVGEVLEIVWQNTGSYTGPNGGVDTHPFHAHGRHFYDIGGGDGEYNATANEAKLENYTPVLR 478 (538)
T ss_pred ccccccCCcCcCceEEEcCCCCEEEEEEECCcccccCCCCCCCCCeeecCCcEEEEcccccccCCccChhhhccCCCCee
Confidence 00000011222456788999999999999974 468999999999999999999888542 235788899999
Q ss_pred eeEEeC----------CCCEEEEEEEccCcceeeeeecchhhhhcceEEEEEEecCCCc
Q 009283 468 CTVQVY----------PKSWTAVYVPLDNVGMWNIRSENWARQYLGQQFYLRVYSSANS 516 (538)
Q Consensus 468 DTv~vp----------~~g~~~irf~adnpG~w~~HCHil~H~d~GMm~~~~V~~p~~~ 516 (538)
||+.|| +++|++|||++||||.|+|||||.+|...||+++|.|.+.+++
T Consensus 479 DTv~vp~~~~~~~~~~~~~~~~ir~~~dNPG~W~~HCHi~~H~~~Gm~~~~~~~~~~~~ 537 (538)
T TIGR03390 479 DTTMLYRYAVKVVPGAPAGWRAWRIRVTNPGVWMMHCHILQHMVMGMQTVWVFGDAEDI 537 (538)
T ss_pred cceeeccccccccccCCCceEEEEEEcCCCeeEEEeccchhhhhccceEEEEeCChHHc
Confidence 999996 7899999999999999999999999999999999999877653
No 13
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=100.00 E-value=9.8e-81 Score=665.00 Aligned_cols=427 Identities=22% Similarity=0.285 Sum_probs=319.6
Q ss_pred EEEEEEEEEEEecCCCeeeEEEEEcCcCcCceEEEecCCEEEEEEEeCCCCCceeeeccccCCCCCCCCCCCC-CCCCCC
Q 009283 27 RFFNWNVTYGDIYPLGVKQQGILINGQFPGPSIEAVTNDNLIISVFNALDEPFLISWNGVQQRRNSWQDGVYG-TNCPIP 105 (538)
Q Consensus 27 ~~~~l~~~~~~~~~~G~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~~~N~l~~~~siH~HG~~~~~~~~~DG~~~-tq~~i~ 105 (538)
++|+|++++..++++|+.+++|+|||++|||+|++++||+|+|+|+|+|+++++|||||+++. +.+||+|+ +||+|+
T Consensus 46 ~~~~L~v~~~~~~~~G~~~~~~~~Ng~~PGP~ir~~~Gd~v~v~v~N~l~~~tsiHwHGl~~~--~~~DGvP~vt~~~I~ 123 (587)
T TIGR01480 46 TEFDLTIGETMVNFTGRARPAITVNGSIPGPLLRWREGDTVRLRVTNTLPEDTSIHWHGILLP--FQMDGVPGVSFAGIA 123 (587)
T ss_pred ceEEEEEEEEEEecCCeEEEEEEECCccCCceEEEECCCEEEEEEEcCCCCCceEEcCCCcCC--ccccCCCcccccccC
Confidence 689999999999999999999999999999999999999999999999999999999999874 56999998 999999
Q ss_pred CCCeEEEEEEecCCccceeeecCchhhhhcceeeEEEEecCCCCCCCCCCCCCceEEEEeeecccChhhHHHHhc-----
Q 009283 106 PGKNFTYVLQVKDQIGSYFYFPSLAFHKAAGGYGGIKIASRPLIPVPFDPPAGDFTILAGDWYKKNHTDLKAILD----- 180 (538)
Q Consensus 106 pG~~~~Y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~l~d~~~~~~~~~~~~~~----- 180 (538)
||++|+|+|+++ ++||||||||.+.|+++||+|+|||++++.++. .+|+|++|+|+||++.....+...+.
T Consensus 124 PG~s~~Y~f~~~-~~GTyWYHsH~~~q~~~GL~G~lIV~~~~~~p~---~~D~E~vl~L~Dw~~~~p~~i~~~l~~~~~~ 199 (587)
T TIGR01480 124 PGETFTYRFPVR-QSGTYWYHSHSGFQEQAGLYGPLIIDPAEPDPV---RADREHVVLLSDWTDLDPAALFRKLKVMAGH 199 (587)
T ss_pred CCCeEEEEEECC-CCeeEEEecCchhHhhccceEEEEECCCccccC---CCCceEEEEeeecccCCHHHHHHhhhccccc
Confidence 999999999995 899999999999999999999999998654333 34899999999999765433321110
Q ss_pred -----------------cCC---------C------------C-CCCCeEEEcCCCCC-CceEEEecCCEEEEEEEecCC
Q 009283 181 -----------------SGS---------D------------L-PFPDGLVINGRGSN-ANTFTVDQGKTYRFRISNVGI 220 (538)
Q Consensus 181 -----------------~~~---------~------------~-~~~~~~liNG~~~~-~p~~~v~~G~~~rlRliN~~~ 220 (538)
.|. . . .....+||||+... .+.+.+++|++|||||||+|+
T Consensus 200 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~d~~dv~G~~~~~LiNG~~~~~~~~~~v~~G~rvRLR~INas~ 279 (587)
T TIGR01480 200 DNYYKRTVADFFRDVRNDGLKQTLADRKMWGQMRMTPTDLADVNGSTYTYLMNGTTPAGNWTGLFRPGEKVRLRFINGSA 279 (587)
T ss_pred ccccccchhhhhhhhccccccccccccccccccccCCcccccccCccceEEEcCccCCCCceEEECCCCEEEEEEEecCC
Confidence 010 0 0 01124899999732 356999999999999999999
Q ss_pred CceEEEEEeCCeeEEEEEcCeecccceecEEEEcCCCeEEEEEEeCCCCcceEEEEEeeccCCccceEEEEEecCCCCCC
Q 009283 221 STSINFRIQGHKMLLVEVEGTHTLQNTYDSLDIHLGQSYSVLVRADQPPQGYYIVISTRFTSQVLSATSVLHYSNSAGSV 300 (538)
Q Consensus 221 ~~~~~~~l~gh~~~via~DG~~~~p~~~~~v~l~pgeR~dv~v~~~~~~g~y~i~~~~~~~~~~~~~~ail~y~~~~~~~ 300 (538)
.+.+.|+|+||+|+||++||++++|+.++++.|+|||||||+|+++ ..|.|+|++..... ...+.++|.+.+.....
T Consensus 280 ~~~f~l~I~gh~m~VIa~DG~~v~Pv~vd~l~I~pGeRyDVlV~~~-~~g~~~i~a~~~~~--~~~~~~~l~~~~~~~~~ 356 (587)
T TIGR01480 280 MTYFDVRIPGLKLTVVAVDGQYVHPVSVDEFRIAPAETFDVIVEPT-GDDAFTIFAQDSDR--TGYARGTLAVRLGLTAP 356 (587)
T ss_pred CceEEEEECCCEEEEEEcCCcCcCceEeCeEEEcCcceeEEEEecC-CCceEEEEEEecCC--CceEEEEEecCCCCCCC
Confidence 9999999999999999999999999999999999999999999987 56899999876432 23677788876532111
Q ss_pred CCCCCCCCCccc-cchhh-----hhh---------hhc---------------ccCCCCCCC--------------CCCC
Q 009283 301 SGPPPGGPTTQI-DWSLE-----QAR---------SLR---------------RNLTASGPR--------------PNPQ 336 (538)
Q Consensus 301 ~~~~p~~P~~~~-~~~~~-----~~~---------~~~---------------~~l~~~~~~--------------~~p~ 336 (538)
..+++..|.... +.... ... ... .+....... ..|.
T Consensus 357 ~p~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (587)
T TIGR01480 357 VPALDPRPLLTMKDMGMGGMHHGMDHSKMSMGGMPGMDMSMRAQSNAPMDHSQMAMDASPKHPASEPLNPLVDMIVDMPM 436 (587)
T ss_pred CCCCCCccccChhhcccccccccccccccccCcccccCccccccccccCccccccccccccCcccccCCccccccccCcc
Confidence 111111111000 00000 000 000 000000000 0000
Q ss_pred ---------------CCCCc----------cccccceEEEEecccCCCCCeEeEEECCeeecCCCCchhhhcccCCCCcc
Q 009283 337 ---------------GSYHY----------GLINTTHTIRLQNTAPTINGKQRYAVNSVSFIPADTPLKLADYFKIPGVF 391 (538)
Q Consensus 337 ---------------~~~~~----------~~~~~~~~~~~~~~~~~~~g~~~~~iNg~~f~~p~~P~l~~~~~~~~g~~ 391 (538)
+...+ .....++++.+.... ....+.|+|||..|.+ .
T Consensus 437 ~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~p~r~~~~~L~g--~m~~~~wtiNG~~~~~-~--------------- 498 (587)
T TIGR01480 437 DRMDDPGIGLRDNGRRVLTYADLHSLFPPPDGRAPGREIELHLTG--NMERFAWSFDGEAFGL-K--------------- 498 (587)
T ss_pred cccCCCCcccccCCcceeehhhccccccccCcCCCCceEEEEEcC--CCceeEEEECCccCCC-C---------------
Confidence 00000 001233444443311 1235679999988631 1
Q ss_pred ccCCCCCCCCCCCcceeeEEEEccCCcEEEEEEEcCCCCCCCccccCCCceEEeecCCCCCCCCCCCcCCCCCCceeeEE
Q 009283 392 SVGSIPDNPTGGGAYLQTSVMAADFRGFAEVVFENPEDTLQSWHIDGHNFFAVGMDGGEWTPASRLTYNLRDTISRCTVQ 471 (538)
Q Consensus 392 ~~~~~~~~p~~~~~~~~~~~~~~~~g~~v~~~l~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~ 471 (538)
..+.++.|+.|+|.|.|.+.+.||||||||.|+++..++ .+ +.+|||+.
T Consensus 499 ------------------~pl~v~~Gervri~l~N~t~~~HpmHlHG~~f~v~~~~G-~~------------~~~~dTv~ 547 (587)
T TIGR01480 499 ------------------TPLRFNYGERLRVVLVNDTMMAHPIHLHGMWSELEDGQG-EF------------QVRKHTVD 547 (587)
T ss_pred ------------------CceEecCCCEEEEEEECCCCCCcceeEcCceeeeecCCC-cc------------cccCCcee
Confidence 124578999999999999999999999999999987543 21 35789999
Q ss_pred eCCCCEEEEEEEccCcceeeeeecchhhhhcceEEEEEEe
Q 009283 472 VYPKSWTAVYVPLDNVGMWNIRSENWARQYLGQQFYLRVY 511 (538)
Q Consensus 472 vp~~g~~~irf~adnpG~w~~HCHil~H~d~GMm~~~~V~ 511 (538)
|+|+++++++|++||||.|+||||++.|++.|||..++|.
T Consensus 548 V~Pg~t~~~~f~ad~pG~w~~HCH~l~H~~~GM~~~~~v~ 587 (587)
T TIGR01480 548 VPPGGKRSFRVTADALGRWAYHCHMLLHMEAGMFREVTVR 587 (587)
T ss_pred eCCCCEEEEEEECCCCeEEEEcCCCHHHHhCcCcEEEEeC
Confidence 9999999999999999999999999999999999999873
No 14
>PRK10965 multicopper oxidase; Provisional
Probab=100.00 E-value=3e-79 Score=649.29 Aligned_cols=434 Identities=18% Similarity=0.195 Sum_probs=303.7
Q ss_pred eEEEEEEEEEEEecCCCe-eeEEEEEcCcCcCceEEEecCCEEEEEEEeCCCCCceeeeccccCCCCCCCCCCCCCCCCC
Q 009283 26 YRFFNWNVTYGDIYPLGV-KQQGILINGQFPGPSIEAVTNDNLIISVFNALDEPFLISWNGVQQRRNSWQDGVYGTNCPI 104 (538)
Q Consensus 26 ~~~~~l~~~~~~~~~~G~-~~~~~~~Ng~~pgP~i~v~~Gd~v~v~~~N~l~~~~siH~HG~~~~~~~~~DG~~~tq~~i 104 (538)
...|+|+++++..+++|. ..++|+|||++|||+|++++||+|+|+|+|+|+++|+|||||+++.+ .+||+| ||+|
T Consensus 45 ~~~~~L~~~~~~~~~~~~~~t~~~~yNg~~PGPtIr~~~Gd~v~v~~~N~L~~~ttiHwHGl~~~~--~~DG~p--q~~I 120 (523)
T PRK10965 45 RGRIQLTIQAGQSSFAGKTATATWGYNGNLLGPAVRLQRGKAVTVDITNQLPEETTLHWHGLEVPG--EVDGGP--QGII 120 (523)
T ss_pred CccEEEEEEEEEEEecCCceeEEEEECCCCCCceEEEECCCEEEEEEEECCCCCccEEcccccCCC--ccCCCC--CCCC
Confidence 346999999999999754 45799999999999999999999999999999999999999998865 599997 8999
Q ss_pred CCCCeEEEEEEecCCccceeeecCc----hhhhhcceeeEEEEecCCCCCCCCC--CCCCceEEEEeeecccChhhHHHH
Q 009283 105 PPGKNFTYVLQVKDQIGSYFYFPSL----AFHKAAGGYGGIKIASRPLIPVPFD--PPAGDFTILAGDWYKKNHTDLKAI 178 (538)
Q Consensus 105 ~pG~~~~Y~f~~~~~~Gt~wYH~H~----~~q~~~Gl~G~liV~~~~~~~~~~~--~~~~e~~l~l~d~~~~~~~~~~~~ 178 (538)
.||++|+|+|++.+++||||||||. +.|+++||+|+|||+++++.+.+++ ...+|++|+++||+++.++++...
T Consensus 121 ~PG~s~~Y~f~~~q~aGT~WYH~H~~g~t~~Qv~~GL~G~lIV~d~~~~~~~lp~~~~~~d~~lvlqD~~~~~~g~~~~~ 200 (523)
T PRK10965 121 APGGKRTVTFTVDQPAATCWFHPHQHGKTGRQVAMGLAGLVLIEDDESLKLGLPKQWGVDDIPVILQDKRFSADGQIDYQ 200 (523)
T ss_pred CCCCEEEEEeccCCCCceEEEecCCCCCcHHHHhCcCeEEEEEcCccccccCCcccCCCceeeEEEEeeeeCCCCceecc
Confidence 9999999999996568999999995 7999999999999999865433332 245699999999999876654322
Q ss_pred hccC--CCCCCCCeEEEcCCCCCCceEEEecCCEEEEEEEecCCCceEEEEE-eCCeeEEEEEcCeec-ccceecEEEEc
Q 009283 179 LDSG--SDLPFPDGLVINGRGSNANTFTVDQGKTYRFRISNVGISTSINFRI-QGHKMLLVEVEGTHT-LQNTYDSLDIH 254 (538)
Q Consensus 179 ~~~~--~~~~~~~~~liNG~~~~~p~~~v~~G~~~rlRliN~~~~~~~~~~l-~gh~~~via~DG~~~-~p~~~~~v~l~ 254 (538)
.... .....+|.++|||+. .|.+.++ +++|||||||+|+.+.+.|++ ++|+|+|||+||+++ +|..++++.|+
T Consensus 201 ~~~~~~~~g~~gd~~lVNG~~--~p~~~v~-~~~~RlRliNas~~r~~~l~~~dg~~~~vIa~DG~~l~~P~~v~~l~la 277 (523)
T PRK10965 201 LDVMTAAVGWFGDTLLTNGAI--YPQHAAP-RGWLRLRLLNGCNARSLNLATSDGRPLYVIASDGGLLAEPVKVSELPIL 277 (523)
T ss_pred ccccccccCccCCeEEECCcc--cceeecC-CCEEEEEEEeccCCceEEEEEcCCceEEEEEeCCCcccCccEeCeEEEC
Confidence 1111 123467899999999 8988885 579999999999999999998 899999999999987 69999999999
Q ss_pred CCCeEEEEEEeCCCCcceEEEEEeeccC-----CccceEEEEEecCCCCCCCCCCCCCCC--ccccc-hhhhhhhhcccC
Q 009283 255 LGQSYSVLVRADQPPQGYYIVISTRFTS-----QVLSATSVLHYSNSAGSVSGPPPGGPT--TQIDW-SLEQARSLRRNL 326 (538)
Q Consensus 255 pgeR~dv~v~~~~~~g~y~i~~~~~~~~-----~~~~~~ail~y~~~~~~~~~~~p~~P~--~~~~~-~~~~~~~~~~~l 326 (538)
|||||||+|+++ +.+.|.++....... .......++++.........++|.... ..... .....+.+...+
T Consensus 278 pGeR~dvlv~~~-~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~P~~l~~~~~~~~~~~~~~r~~~l~~ 356 (523)
T PRK10965 278 MGERFEVLVDTS-DGKAFDLVTLPVSQMGMALAPFDKPLPVLRIQPLLISASGTLPDSLASLPALPSLEGLTVRRLQLSM 356 (523)
T ss_pred ccceEEEEEEcC-CCceEEEEEecccCcccccccCCCceeEEEEeccCcCCCCcCChhhccCCCCCcccccceeEEEEee
Confidence 999999999998 467888887532110 011123445554322111111221000 00000 000000000000
Q ss_pred CCCCC--------CCCCCCCCCccccccceEE-EEeccc---CCC----CCe-----EeEEECCeeecCCCCchhhhccc
Q 009283 327 TASGP--------RPNPQGSYHYGLINTTHTI-RLQNTA---PTI----NGK-----QRYAVNSVSFIPADTPLKLADYF 385 (538)
Q Consensus 327 ~~~~~--------~~~p~~~~~~~~~~~~~~~-~~~~~~---~~~----~g~-----~~~~iNg~~f~~p~~P~l~~~~~ 385 (538)
..... ........ +........ .+.... ... .+. ..|+|||+.|.. +.|
T Consensus 357 ~~~~~~~~m~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ING~~~~~-~~~------- 426 (523)
T PRK10965 357 DPRLDMMGMQMLMEKYGDQAM--AGMDMDHMMGHMGHGNMDHMNHGAADAGPAFDFHHANKINGKAFDM-NKP------- 426 (523)
T ss_pred ccccchhhhhhcccccccccc--ccccccccccccccccccccccccccccccccccccccCCCeECCC-CCc-------
Confidence 00000 00000000 000000000 000000 000 000 125788888742 111
Q ss_pred CCCCccccCCCCCCCCCCCcceeeEEEEccCCcEEEEEEEcCCC-CCCCccccCCCceEEeecCCCCCCCCCCCcCCCCC
Q 009283 386 KIPGVFSVGSIPDNPTGGGAYLQTSVMAADFRGFAEVVFENPED-TLQSWHIDGHNFFAVGMDGGEWTPASRLTYNLRDT 464 (538)
Q Consensus 386 ~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~v~~~l~N~~~-~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p 464 (538)
.+.++.|++|+|+|.|.+. +.|||||||++||||++++.+. ....+
T Consensus 427 -------------------------~~~~~~G~~e~w~i~N~~~~~~Hp~HlHg~~F~Vl~~~g~~~--------~~~~~ 473 (523)
T PRK10965 427 -------------------------MFAAKKGQYERWVISGVGDMMLHPFHIHGTQFRILSENGKPP--------AAHRA 473 (523)
T ss_pred -------------------------ceecCCCCEEEEEEEeCCCCCccCeEEeCcEEEEEEecCCCC--------Ccccc
Confidence 1457889999999999885 6899999999999999975322 12346
Q ss_pred CceeeEEeCCCCEEEEEEEcc----CcceeeeeecchhhhhcceEEEEEEe
Q 009283 465 ISRCTVQVYPKSWTAVYVPLD----NVGMWNIRSENWARQYLGQQFYLRVY 511 (538)
Q Consensus 465 ~~rDTv~vp~~g~~~irf~ad----npG~w~~HCHil~H~d~GMm~~~~V~ 511 (538)
.|||||.|++ +.++|+++++ ++|.||||||||+|||.|||..|+|.
T Consensus 474 ~wkDTv~v~~-~~~~i~~~f~~~~~~~g~~~~HCHiL~Hed~GMM~~~~V~ 523 (523)
T PRK10965 474 GWKDTVRVEG-GRSEVLVKFDHDAPKEHAYMAHCHLLEHEDTGMMLGFTVS 523 (523)
T ss_pred ccccEEEECC-cEEEEEEEecCCCCCCCCEEEEeCchhhhccCccceeEeC
Confidence 8999999987 6777766654 67799999999999999999999984
No 15
>PRK10883 FtsI repressor; Provisional
Probab=100.00 E-value=2.9e-77 Score=628.93 Aligned_cols=400 Identities=18% Similarity=0.177 Sum_probs=296.9
Q ss_pred EEEEEEEEEEecCC-CeeeEEEEEcCcCcCceEEEecCCEEEEEEEeCCCCCceeeeccccCCCCCCCCCCCCCCCCCCC
Q 009283 28 FFNWNVTYGDIYPL-GVKQQGILINGQFPGPSIEAVTNDNLIISVFNALDEPFLISWNGVQQRRNSWQDGVYGTNCPIPP 106 (538)
Q Consensus 28 ~~~l~~~~~~~~~~-G~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~~~N~l~~~~siH~HG~~~~~~~~~DG~~~tq~~i~p 106 (538)
.++|+++.+..+++ |..+++|+|||++|||+||+++||+|+|+|+|+|+++|++||||+++... .+||++ ++|.|
T Consensus 47 ~~~l~~~~~~~~~~~g~~~~v~~~ng~~pGPtir~~~Gd~v~v~v~N~L~~~ttiHwHGl~~~~~-~~~g~~---~~I~P 122 (471)
T PRK10883 47 PLFLTLQRAHWSFTGGTKASVWGINGRYLGPTIRVWKGDDVKLIYSNRLTEPVSMTVSGLQVPGP-LMGGPA---RMMSP 122 (471)
T ss_pred cEEEEEEEeEEEecCCceeeEEEECCcccCCeEEEECCCEEEEEEEeCCCCCCceeECCccCCCC-CCCCcc---ccCCC
Confidence 37999999999888 56789999999999999999999999999999999999999999998765 577765 88999
Q ss_pred CCeEEEEEEecCCccceeeecCc----hhhhhcceeeEEEEecCCCCCCCCC--CCCCceEEEEeeecccChhhHHHHhc
Q 009283 107 GKNFTYVLQVKDQIGSYFYFPSL----AFHKAAGGYGGIKIASRPLIPVPFD--PPAGDFTILAGDWYKKNHTDLKAILD 180 (538)
Q Consensus 107 G~~~~Y~f~~~~~~Gt~wYH~H~----~~q~~~Gl~G~liV~~~~~~~~~~~--~~~~e~~l~l~d~~~~~~~~~~~~~~ 180 (538)
|++|+|+|++.+++||||||||. +.|+++||+|+|||+++.+++.+++ ...+|++|+++||+++..+..... .
T Consensus 123 G~~~~y~f~~~~~aGT~WYH~H~~~~t~~qv~~GL~G~lII~d~~~~~~~~p~~~~~~d~~l~l~D~~~~~~g~~~~~-~ 201 (471)
T PRK10883 123 NADWAPVLPIRQNAATCWYHANTPNRMAQHVYNGLAGMWLVEDEVSKSLPIPNHYGVDDFPVIIQDKRLDNFGTPEYN-E 201 (471)
T ss_pred CCeEEEEEecCCCceeeEEccCCCCchhhhHhcCCeEEEEEeCCcccccCCcccCCCcceeEEeeeeeeccCCCcccc-c
Confidence 99999999986669999999994 4699999999999999765433332 234599999999998765442211 1
Q ss_pred cCCCCCCCCeEEEcCCCCCCceEEEecCCEEEEEEEecCCCceEEEEE-eCCeeEEEEEcCeec-ccceecEEEEcCCCe
Q 009283 181 SGSDLPFPDGLVINGRGSNANTFTVDQGKTYRFRISNVGISTSINFRI-QGHKMLLVEVEGTHT-LQNTYDSLDIHLGQS 258 (538)
Q Consensus 181 ~~~~~~~~~~~liNG~~~~~p~~~v~~G~~~rlRliN~~~~~~~~~~l-~gh~~~via~DG~~~-~p~~~~~v~l~pgeR 258 (538)
.......+|.++|||+. .|.++|++| +|||||||+|+.+.+.|+| ++|+|+|||+||+++ +|..++++.|+||||
T Consensus 202 ~~~~g~~gd~~lvNG~~--~p~~~v~~~-~~RlRliNas~~~~~~l~l~d~~~~~vIa~DGg~~~~P~~~~~l~l~pGeR 278 (471)
T PRK10883 202 PGSGGFVGDTLLVNGVQ--SPYVEVSRG-WVRLRLLNASNARRYQLQMSDGRPLHVIAGDQGFLPAPVSVKQLSLAPGER 278 (471)
T ss_pred cccCCccCCeeEECCcc--CCeEEecCC-EEEEEEEEccCCceEEEEEcCCCeEEEEEeCCCcccCCcEeCeEEECCCCe
Confidence 12224577999999999 899999885 7999999999999999999 899999999997776 699999999999999
Q ss_pred EEEEEEeCCCCcceEEEEEeeccCC-cc----------ceEEEEEecCCCCCCCCCCCCCCCccccchhhhhhhhcccCC
Q 009283 259 YSVLVRADQPPQGYYIVISTRFTSQ-VL----------SATSVLHYSNSAGSVSGPPPGGPTTQIDWSLEQARSLRRNLT 327 (538)
Q Consensus 259 ~dv~v~~~~~~g~y~i~~~~~~~~~-~~----------~~~ail~y~~~~~~~~~~~p~~P~~~~~~~~~~~~~~~~~l~ 327 (538)
|||+|++++ .+.+.+++....... .. ....+++...... .+..+ . . ++..+.
T Consensus 279 ~dvlVd~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~-~----~------~p~~l~ 341 (471)
T PRK10883 279 REILVDMSN-GDEVSITAGEAAGIVDRLRGFFEPSSILVSTLVLTLRPTGL-----LPLVT-D----N------LPMRLL 341 (471)
T ss_pred EEEEEECCC-CceEEEECCCccccccccccccCCccccccceeEEEEcccc-----ccCCC-C----c------CChhhc
Confidence 999999974 456666552211000 00 0011122211100 00000 0 0 000111
Q ss_pred CCCCCCCCCCCCCccccccceEEEEecccCCCCCeEeEEECCeeecCCCCchhhhcccCCCCccccCCCCCCCCCCCcce
Q 009283 328 ASGPRPNPQGSYHYGLINTTHTIRLQNTAPTINGKQRYAVNSVSFIPADTPLKLADYFKIPGVFSVGSIPDNPTGGGAYL 407 (538)
Q Consensus 328 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~iNg~~f~~p~~P~l~~~~~~~~g~~~~~~~~~~p~~~~~~~ 407 (538)
... ..+ ......+++.+.. ..|.|||++|.+...+
T Consensus 342 ~~~--~~~------~~~~~~~~~~l~~--------~~~~INg~~~~~~~~~----------------------------- 376 (471)
T PRK10883 342 PDE--IME------GSPIRSREISLGD--------DLPGINGALWDMNRID----------------------------- 376 (471)
T ss_pred CCC--CCC------CCCcceEEEEecC--------CcCccCCcccCCCcce-----------------------------
Confidence 000 000 0011223444421 2478999998531111
Q ss_pred eeEEEEccCCcEEEEEEEcCCCCCCCccccCCCceEEeecCCCCCCCCCCCcCCCCCCceeeEEeCCCCEEEEEEEccCc
Q 009283 408 QTSVMAADFRGFAEVVFENPEDTLQSWHIDGHNFFAVGMDGGEWTPASRLTYNLRDTISRCTVQVYPKSWTAVYVPLDNV 487 (538)
Q Consensus 408 ~~~~~~~~~g~~v~~~l~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adnp 487 (538)
+.++.|++|+|+|.|. +.|||||||+.|||+++++.... ..+..|||||.|+ +.++|+++++++
T Consensus 377 ----~~~~~g~~e~W~~~n~--~~HP~HlHg~~FqVl~~~G~~~~--------~~~~gwkDTV~v~--~~v~i~~~f~~~ 440 (471)
T PRK10883 377 ----VTAQQGTWERWTVRAD--MPQAFHIEGVMFLIRNVNGAMPF--------PEDRGWKDTVWVD--GQVELLVYFGQP 440 (471)
T ss_pred ----eecCCCCEEEEEEECC--CCcCEeECCccEEEEEecCCCCC--------ccccCcCcEEEcC--CeEEEEEEecCC
Confidence 3468899999999886 58999999999999999764221 1234799999996 469999999988
Q ss_pred c----eeeeeecchhhhhcceEEEEEEecC
Q 009283 488 G----MWNIRSENWARQYLGQQFYLRVYSS 513 (538)
Q Consensus 488 G----~w~~HCHil~H~d~GMm~~~~V~~p 513 (538)
| .||||||||+|||.|||..|+|..|
T Consensus 441 ~~~~~~~m~HCHiLeHeD~GMM~~~~V~~~ 470 (471)
T PRK10883 441 SWAHFPFLFYSQTLEMADRGSIGQLLVNPA 470 (471)
T ss_pred CCCCCcEEeecccccccccCCccCeEEecC
Confidence 7 8999999999999999999999654
No 16
>COG2132 SufI Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=3.2e-62 Score=517.39 Aligned_cols=401 Identities=22% Similarity=0.250 Sum_probs=292.0
Q ss_pred ecCCCeeeEEEEEcCcCcCceEEEecCCEEEEEEEeCCCCCceeeeccccCCCCCCCCCCCC-CCCCCCCCCeEEEEEEe
Q 009283 38 IYPLGVKQQGILINGQFPGPSIEAVTNDNLIISVFNALDEPFLISWNGVQQRRNSWQDGVYG-TNCPIPPGKNFTYVLQV 116 (538)
Q Consensus 38 ~~~~G~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~~~N~l~~~~siH~HG~~~~~~~~~DG~~~-tq~~i~pG~~~~Y~f~~ 116 (538)
...++.....|.|||++|||+|++++||+|+++++|+|.++|++||||+.++ +.+||++. +|+++.||++++|.|+.
T Consensus 45 ~~~~~~~~~~~~~~g~~~gP~i~~~~Gd~v~l~~~N~l~~~t~vh~HG~~~p--~~~dG~~~~~~~~~~~~~~~~y~f~~ 122 (451)
T COG2132 45 AFAPGTGATVWGYNGALPGPTIRVKKGDTVTLDLTNRLLVDTSVHWHGLPVP--GEMDGVPPLTQIPPGPGETPTYTFTQ 122 (451)
T ss_pred eeecCCCceeEEecccccCceEEEecCCEEEEEEEeCCCCCceEEEcCcccC--ccccCCCcccccCCCCCCcEEEeecC
Confidence 3455677899999999999999999999999999999988899999998665 67999998 99999999999999999
Q ss_pred cCCccceeeecCchhhhhcceeeEEEEecCCCCCCCCCCCCCceEEEEeeecccChhhHHHHhccCCCCCCCCeEEEcCC
Q 009283 117 KDQIGSYFYFPSLAFHKAAGGYGGIKIASRPLIPVPFDPPAGDFTILAGDWYKKNHTDLKAILDSGSDLPFPDGLVINGR 196 (538)
Q Consensus 117 ~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~l~d~~~~~~~~~~~~~~~~~~~~~~~~~liNG~ 196 (538)
. ++||||||+|.+.|+++||+|++||++....+. ..|++..++..+|........... ........++..+|||+
T Consensus 123 ~-~~gT~wyh~H~~~Q~~~Gl~G~~II~~~~~~~~---~~d~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~vnG~ 197 (451)
T COG2132 123 D-VPGTYWYHPHTHGQVYDGLAGALIIEDENSEPL---GVDDEPVILQDDWLDEDGTDLYQE-GPAMGGFPGDTLLVNGA 197 (451)
T ss_pred C-CCcceEeccCCCchhhcccceeEEEeCCCCCCC---CCCceEEEEEeeeecCCCCccccC-CccccCCCCCeEEECCC
Confidence 4 688999999999999999999999999865444 337777777778876543332221 11123356789999997
Q ss_pred CCCCceEEEecCCEEEEEEEecCCCceEEEEEeCCeeEEEEEcCeecccceecEEEEcCCCeEEEEEEeCCCCcceEEEE
Q 009283 197 GSNANTFTVDQGKTYRFRISNVGISTSINFRIQGHKMLLVEVEGTHTLQNTYDSLDIHLGQSYSVLVRADQPPQGYYIVI 276 (538)
Q Consensus 197 ~~~~p~~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~~~v~l~pgeR~dv~v~~~~~~g~y~i~~ 276 (538)
. .|.+.++. ++|||||+|+++.+.+.+++.+++|+||++||.++++..++.+.|+|||||||+++++ ..+.+.+.+
T Consensus 198 ~--~p~~~~~~-g~~rlRl~n~~~~~~~~~~~~~~~~~Vi~~DG~~v~~~~~d~~~l~p~er~~v~v~~~-~~~~~~l~~ 273 (451)
T COG2132 198 I--LPFKAVPG-GVVRLRLLNAGNARTYHLALGGGPLTVIAVDGGPLPPVSVDELYLAPGERYEVLVDMN-DGGAVTLTA 273 (451)
T ss_pred c--cceeecCC-CeEEEEEEecCCceEEEEEecCceEEEEEeCCcCcCceeeeeEEecCcceEEEEEEcC-CCCeEEEEe
Confidence 7 67776655 5699999999988889999999999999999999999889999999999999999998 467777777
Q ss_pred EeeccCCccceEEEEEecCCCCC---CCCCCCCCCCccccchhhhhhhhcccCCCCCCCCCCCCCCCccccccceEEEEe
Q 009283 277 STRFTSQVLSATSVLHYSNSAGS---VSGPPPGGPTTQIDWSLEQARSLRRNLTASGPRPNPQGSYHYGLINTTHTIRLQ 353 (538)
Q Consensus 277 ~~~~~~~~~~~~ail~y~~~~~~---~~~~~p~~P~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~ 353 (538)
....... ...+.......... ...+....+..+. ....... .+......+.+ .....+.+.
T Consensus 274 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~---~~~~~~~--~~~~~~~~~~~---------~~~~~~~l~ 337 (451)
T COG2132 274 LGEDMPD--TLKGFRAPNPILTPSYPVLNGRVGAPTGDM---ADHAPVG--LLVTILVEPGP---------NRDTDFHLI 337 (451)
T ss_pred ccccCCc--eeeeeeccccccccccccccccccCCCcch---hhccccc--cchhhcCCCcc---------cccccchhh
Confidence 5521111 11111111110000 0000000111110 0000000 00000000000 001111221
Q ss_pred cccCCCCCeEeEEECCeeecCCCCchhhhcccCCCCccccCCCCCCCCCCCcceeeEEEEccCCcEEEEEEEcCCCCCCC
Q 009283 354 NTAPTINGKQRYAVNSVSFIPADTPLKLADYFKIPGVFSVGSIPDNPTGGGAYLQTSVMAADFRGFAEVVFENPEDTLQS 433 (538)
Q Consensus 354 ~~~~~~~g~~~~~iNg~~f~~p~~P~l~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~v~~~l~N~~~~~HP 433 (538)
. ..+...|.+|++.|.+. ...+.++.|++++|+|.|.+.+.||
T Consensus 338 ~----~~~~~~~~~n~~~~~~~---------------------------------~~~~~~~~G~~~~~~i~n~~~~~HP 380 (451)
T COG2132 338 G----GIGGYVWAINGKAFDDN---------------------------------RVTLIAKAGTRERWVLTNDTPMPHP 380 (451)
T ss_pred c----ccccccccccCccCCCC---------------------------------cCceeecCCCEEEEEEECCCCCccC
Confidence 1 11235688888776421 1224568899999999999999999
Q ss_pred ccccCCCceEEeecCCCCCCCCCCCcCCCCCCceeeEEeCCCCEEEEEEEccCcceeeeeecchhhhhcceEEEEEEe
Q 009283 434 WHIDGHNFFAVGMDGGEWTPASRLTYNLRDTISRCTVQVYPKSWTAVYVPLDNVGMWNIRSENWARQYLGQQFYLRVY 511 (538)
Q Consensus 434 ~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adnpG~w~~HCHil~H~d~GMm~~~~V~ 511 (538)
|||||+.|+|++.+ .. .....+.||||+.+.+++.++++|++|+||.||||||+++|++.|||..+.|.
T Consensus 381 ~HlHg~~F~v~~~~-~~--------~~~~~~~~kDTv~v~~~~~~~v~~~a~~~g~~~~HCH~l~H~~~Gm~~~~~v~ 449 (451)
T COG2132 381 FHLHGHFFQVLSGD-AP--------APGAAPGWKDTVLVAPGERLLVRFDADYPGPWMFHCHILEHEDNGMMGQFGVV 449 (451)
T ss_pred eEEcCceEEEEecC-CC--------cccccCccceEEEeCCCeEEEEEEeCCCCCceEEeccchhHhhcCCeeEEEec
Confidence 99999999999987 11 12245689999999999999999999999999999999999999999999885
No 17
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=100.00 E-value=2.6e-49 Score=395.87 Aligned_cols=264 Identities=17% Similarity=0.207 Sum_probs=219.5
Q ss_pred ccCCCeEEEEEEEEEEEecC-CCeeeEEEEEcCcCcCceEEEecCCEEEEEEEeCCC--CCceeeeccccCCCCCCCCCC
Q 009283 21 RGESPYRFFNWNVTYGDIYP-LGVKQQGILINGQFPGPSIEAVTNDNLIISVFNALD--EPFLISWNGVQQRRNSWQDGV 97 (538)
Q Consensus 21 ~~~~~~~~~~l~~~~~~~~~-~G~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~~~N~l~--~~~siH~HG~~~~~~~~~DG~ 97 (538)
.+.+.+++|+|++++..+++ +|..+.+|+|||++|||+|++++||+|+|+|+|+++ .++++||||.. .+||+
T Consensus 22 ~~~~~~~~~~l~a~~~~~~~~~G~~~~~~~~nG~~pGP~irv~~Gd~v~v~v~N~~~~~~~h~~h~H~~~-----~~dg~ 96 (311)
T TIGR02376 22 RSGPKVVEVTMTIEEKKMVIDDGVTYQAMTFDGSVPGPLIRVHEGDYVELTLINPPTNTMPHNVDFHAAT-----GALGG 96 (311)
T ss_pred cCCCcEEEEEEEEEEEEEEeCCCeEEEEEEECCcccCceEEEECCCEEEEEEEeCCCCCCceeeeecCCC-----ccCCC
Confidence 55667899999999999884 699999999999999999999999999999999986 58899999962 47888
Q ss_pred CC-CCCCCCCCCeEEEEEEecCCccceeeecC----chhhhhcceeeEEEEecCCCCCCCCCCCCCceEEEEeeecccCh
Q 009283 98 YG-TNCPIPPGKNFTYVLQVKDQIGSYFYFPS----LAFHKAAGGYGGIKIASRPLIPVPFDPPAGDFTILAGDWYKKNH 172 (538)
Q Consensus 98 ~~-tq~~i~pG~~~~Y~f~~~~~~Gt~wYH~H----~~~q~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~l~d~~~~~~ 172 (538)
+. +| |.||++++|+|++ +++|||||||| ++.|+.+||+|+|||++++..+ ..|+|++|+++||+++..
T Consensus 97 ~~~~~--I~PG~t~ty~F~~-~~~Gty~YH~H~~~~~~~q~~~Gl~G~liV~~~~~~~----~~d~e~~l~l~d~~~~~~ 169 (311)
T TIGR02376 97 AALTQ--VNPGETATLRFKA-TRPGAFVYHCAPPGMVPWHVVSGMNGAIMVLPREGLP----EYDKEYYIGESDLYTPKD 169 (311)
T ss_pred Cccee--ECCCCeEEEEEEc-CCCEEEEEEcCCCCchhHHhhcCcceEEEeeccCCCc----CcceeEEEeeeeEecccc
Confidence 76 66 9999999999999 58999999999 4689999999999999865322 348899999999998754
Q ss_pred hhHHHHhc-c--CCCCCCCCeEEEcCCCC-CCceEEEecCCEEEEEEEecCCCceEEEEEeCCeeEEEEEcCeecccce-
Q 009283 173 TDLKAILD-S--GSDLPFPDGLVINGRGS-NANTFTVDQGKTYRFRISNVGISTSINFRIQGHKMLLVEVEGTHTLQNT- 247 (538)
Q Consensus 173 ~~~~~~~~-~--~~~~~~~~~~liNG~~~-~~p~~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~~p~~- 247 (538)
+....... . ......++.++|||+.. ..+.+.+++|+++||||+|++..+.+.|+++++.+++|+.||.++.+..
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~iNG~~~~~~~~~~v~~G~~~RlRiiNa~~~~~~~~~~~g~~~~~v~~DG~~~~~~~~ 249 (311)
T TIGR02376 170 EGEGGAYEDDVAAMRTLTPTHVVFNGAVGALTGDNALTAGVGERVLFVHSQPNRDSRPHLIGGHGDYVWVTGKFANPPNR 249 (311)
T ss_pred ccccccccchHHHHhcCCCCEEEECCccCCCCCCcccccCCcEEEEEEcCCCCCCCCCeEecCCceEEEECCcccCCCCC
Confidence 32110000 0 00124568999999953 2467899999999999999999889999999999999999999998644
Q ss_pred -ecEEEEcCCCeEEEEEEeCCCCcceEEEEEeeccCCccceEEEEEecCCC
Q 009283 248 -YDSLDIHLGQSYSVLVRADQPPQGYYIVISTRFTSQVLSATSVLHYSNSA 297 (538)
Q Consensus 248 -~~~v~l~pgeR~dv~v~~~~~~g~y~i~~~~~~~~~~~~~~ail~y~~~~ 297 (538)
++++.|+||||+||+|+++ ++|.|+++++...........++|+|++..
T Consensus 250 ~~~~~~i~PG~R~dv~v~~~-~pG~y~~~~~~~~~~~~~g~~~~i~~~g~~ 299 (311)
T TIGR02376 250 DVETWFIPGGSAAAALYTFE-QPGVYAYVDHNLIEAFEKGAAAQVKVEGAW 299 (311)
T ss_pred CcceEEECCCceEEEEEEeC-CCeEEEEECcHHHHHHhCCCEEEEEECCCC
Confidence 8999999999999999999 589999998764332234578999998754
No 18
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=100.00 E-value=1e-36 Score=260.84 Aligned_cols=116 Identities=41% Similarity=0.745 Sum_probs=108.0
Q ss_pred EEEEEEecCCCeeeEEEEEcCcCcCceEEEecCCEEEEEEEeCCCCCceeeeccccCCCCCCCCCCCC-CCCCCCCCCeE
Q 009283 32 NVTYGDIYPLGVKQQGILINGQFPGPSIEAVTNDNLIISVFNALDEPFLISWNGVQQRRNSWQDGVYG-TNCPIPPGKNF 110 (538)
Q Consensus 32 ~~~~~~~~~~G~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~~~N~l~~~~siH~HG~~~~~~~~~DG~~~-tq~~i~pG~~~ 110 (538)
.+++..+.++|..+++|+|||++|||+|++++||+|+|+|+|+++++++|||||+++...+++||+++ +||+|.||+++
T Consensus 1 ~v~~~~~~~~~~~~~~~~~ng~~pGPtI~v~~Gd~v~i~~~N~l~~~~siH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~ 80 (117)
T PF07732_consen 1 NVTETTVSPDGGTRKVWTYNGQFPGPTIRVREGDTVRITVTNNLDEPTSIHWHGLHQPPSPWMDGVPGVTQCPIAPGESF 80 (117)
T ss_dssp -EEEEEEETTSTEEEEEEETTBSSEEEEEEETTEEEEEEEEEESSSGBSEEEETSBSTTGGGGSGGTTTSGSSBSTTEEE
T ss_pred CeeEEEEEeCCcEEEEEEECCCCCCCEEEEEcCCeeEEEEEeccccccccccceeeeeeeeecCCcccccceeEEeecce
Confidence 47889999998779999999999999999999999999999999999999999999988888999998 99999999999
Q ss_pred EEEEEecCCccceeeecCchhhhhcceeeEEEEecCC
Q 009283 111 TYVLQVKDQIGSYFYFPSLAFHKAAGGYGGIKIASRP 147 (538)
Q Consensus 111 ~Y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~ 147 (538)
+|+|++++++||||||||...|..+||+|+|||++++
T Consensus 81 ~Y~~~~~~~~Gt~wYH~H~~~~~~~GL~G~~iV~~~~ 117 (117)
T PF07732_consen 81 TYEFTANQQAGTYWYHSHVHGQQVMGLYGAIIVEPPE 117 (117)
T ss_dssp EEEEEESSCSEEEEEEECSTTHHHTTEEEEEEEE-TT
T ss_pred eeeEeeeccccceeEeeCCCchhcCcCEEEEEEcCCC
Confidence 9999997559999999998888889999999999863
No 19
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=99.97 E-value=4.6e-31 Score=234.97 Aligned_cols=109 Identities=26% Similarity=0.428 Sum_probs=98.3
Q ss_pred CcceeeEEEEccCCcEEEEEEEcCCCCCCCccccCCCceEEeecCCCCCCCCCCCcCCCCCCceeeEEeCCCCEEEEEEE
Q 009283 404 GAYLQTSVMAADFRGFAEVVFENPEDTLQSWHIDGHNFFAVGMDGGEWTPASRLTYNLRDTISRCTVQVYPKSWTAVYVP 483 (538)
Q Consensus 404 ~~~~~~~~~~~~~g~~v~~~l~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~ 483 (538)
..+.+...+.++.|++|+|+|+|.+...|||||||++|+|++++.+.+.......+++.+|.||||+.|+++++++|||+
T Consensus 28 ~~~~~~~~~~~~~g~~v~~~l~N~~~~~Hp~HlHG~~F~vl~~~~~~~~~~~~~~~~~~~~~~~DTv~v~~~~~~~i~~~ 107 (138)
T PF07731_consen 28 PFFGNTPVIEVKNGDVVEIVLQNNGSMPHPFHLHGHSFQVLGRGGGPWNPDDTQSYNPENPGWRDTVLVPPGGWVVIRFR 107 (138)
T ss_dssp TSSSTTSEEEEETTSEEEEEEEECTTSSEEEEETTSEEEEEEETTEESTTHCGGCCCSSSSSEESEEEEETTEEEEEEEE
T ss_pred ccCCCcceEEEeCCCEEEEEEECCCCCccceEEEeeEEEeeecCCcccccccccccccccCcccccccccceeEEEEEEE
Confidence 34456788899999999999999999999999999999999998877655555667889999999999999999999999
Q ss_pred ccCcceeeeeecchhhhhcceEEEEEEec
Q 009283 484 LDNVGMWNIRSENWARQYLGQQFYLRVYS 512 (538)
Q Consensus 484 adnpG~w~~HCHil~H~d~GMm~~~~V~~ 512 (538)
+||||.|+||||+++|+|.|||+.|+|.+
T Consensus 108 ~~~~G~w~~HCHi~~H~~~GM~~~~~v~~ 136 (138)
T PF07731_consen 108 ADNPGPWLFHCHILEHEDNGMMAVFVVGP 136 (138)
T ss_dssp ETSTEEEEEEESSHHHHHTT-EEEEEECH
T ss_pred eecceEEEEEEchHHHHhCCCeEEEEEcC
Confidence 99999999999999999999999999864
No 20
>PF00394 Cu-oxidase: Multicopper oxidase; InterPro: IPR001117 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 1 (blue) domains. These domains are also present in proteins that have lost the ability to bind copper.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1RZP_A 2AVF_D 1NIA_A 1KCB_A 2NRD_A 1NIB_A 2BW4_A 1RZQ_C 2BWD_A 2BWI_A ....
Probab=99.94 E-value=4.5e-26 Score=207.30 Aligned_cols=138 Identities=37% Similarity=0.671 Sum_probs=114.6
Q ss_pred CceEEEEeeecccChhhHHH-HhccC----CCCCCCCeEEEcCCCC-----------CCceEEEecCCEEEEEEEecCCC
Q 009283 158 GDFTILAGDWYKKNHTDLKA-ILDSG----SDLPFPDGLVINGRGS-----------NANTFTVDQGKTYRFRISNVGIS 221 (538)
Q Consensus 158 ~e~~l~l~d~~~~~~~~~~~-~~~~~----~~~~~~~~~liNG~~~-----------~~p~~~v~~G~~~rlRliN~~~~ 221 (538)
.|++|+++||+++....+.. .+..+ ...+.+++++|||++. ..+.+.+++|++|||||||+|+.
T Consensus 1 ~e~~i~l~DW~~~~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~~~~~~~~~~~~~~~~~~~~v~~g~~~rlRliNa~~~ 80 (159)
T PF00394_consen 1 EEYVIMLSDWYHDDSDDLLQQYFAPGKGPMGMPPIPDSILINGKGRFDCSSADYTGGEPPVIKVKPGERYRLRLINAGAS 80 (159)
T ss_dssp GGGEEEEEEETSSCTTTHBH-HSSCHHHSHSCTSSCSEEEETTBTCBTTCTTGSTTSTSGEEEEETTTEEEEEEEEESSS
T ss_pred CeEEEEEeECCCCCHHHhhhhhccccccccCCCcCCcEEEECCccccccccccccccccceEEEcCCcEEEEEEEeccCC
Confidence 47899999999987655433 22221 2367899999999753 25899999999999999999999
Q ss_pred ceEEEEEeCCeeEEEEEcCeecccceecEEEEcCCCeEEEEEEeCCCCcceEEEEEee----ccCCccceEEEEEecC
Q 009283 222 TSINFRIQGHKMLLVEVEGTHTLQNTYDSLDIHLGQSYSVLVRADQPPQGYYIVISTR----FTSQVLSATSVLHYSN 295 (538)
Q Consensus 222 ~~~~~~l~gh~~~via~DG~~~~p~~~~~v~l~pgeR~dv~v~~~~~~g~y~i~~~~~----~~~~~~~~~ail~y~~ 295 (538)
+.+.|+|+||+|+|||+||.+++|.+++++.|+|||||||+|++++++|+|+|++... .......+.|+|+|.+
T Consensus 81 ~~~~~~i~gh~~~Via~DG~~v~p~~~~~l~l~~G~R~dvlv~~~~~~g~y~i~~~~~~~~~~~~~~~~~~aiL~Y~~ 158 (159)
T PF00394_consen 81 TSFNFSIDGHPMTVIAADGVPVEPYKVDTLVLAPGQRYDVLVTADQPPGNYWIRASYQHDSINDPQNGNALAILRYDG 158 (159)
T ss_dssp -BEEEEETTBCEEEEEETTEEEEEEEESBEEE-TTEEEEEEEEECSCSSEEEEEEEESSSSSHSHGGGTTEEEEEETT
T ss_pred eeEEEEeeccceeEeeeccccccccccceEEeeCCeEEEEEEEeCCCCCeEEEEEecccCCCccCCCcEEEEEEEECC
Confidence 9999999999999999999999999999999999999999999997789999999532 1223567899999986
No 21
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=99.78 E-value=8.6e-19 Score=155.65 Aligned_cols=102 Identities=21% Similarity=0.244 Sum_probs=81.1
Q ss_pred CCeeeEEEEEcCcCcCceEEEecCCEEEEEEEeCCC---CCceeeeccccCCCCCCCCCCCC-CCCCCCCC---C-e--E
Q 009283 41 LGVKQQGILINGQFPGPSIEAVTNDNLIISVFNALD---EPFLISWNGVQQRRNSWQDGVYG-TNCPIPPG---K-N--F 110 (538)
Q Consensus 41 ~G~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~~~N~l~---~~~siH~HG~~~~~~~~~DG~~~-tq~~i~pG---~-~--~ 110 (538)
.+....-+.++| .++|+|++++||+|+|+|+|.++ ....||+||...+..+.+||++. +|++|.|+ + . .
T Consensus 37 ~~~~~~~f~~~~-~~~P~I~v~~Gd~V~v~v~N~~~~~~H~~~I~~~g~~~~~~p~mdG~~~~~~~~i~p~~~~g~~~~~ 115 (148)
T TIGR03095 37 PGPSMYSFEIHD-LKNPTIVIPEGVTVHFTVINTDTDSGHNFDISKRGPPYPYMPGMDGLGFVAGTGFLPPPKSGKFGYT 115 (148)
T ss_pred CCCCceeEEecC-CCCCEEEEcCCCEEEEEEEeCCCCccccEEeecCCCccccccccCCCCccccCcccCCCCCCcccee
Confidence 345566677888 57999999999999999999964 34667777765544456999998 99998884 1 1 3
Q ss_pred EEEEEecCCccceeeecCchhhhhcceeeEEEEe
Q 009283 111 TYVLQVKDQIGSYFYFPSLAFHKAAGGYGGIKIA 144 (538)
Q Consensus 111 ~Y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~ 144 (538)
++.|+++ ++||||||||...|+.+||+|.|||+
T Consensus 116 ~~tf~f~-~aGtywyhC~~pgH~~~GM~G~iiV~ 148 (148)
T TIGR03095 116 DFTYHFS-TAGTYWYLCTYPGHAENGMYGKIVVK 148 (148)
T ss_pred EEEEECC-CCeEEEEEcCChhHHHCCCEEEEEEC
Confidence 4566664 79999999999999999999999985
No 22
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=99.70 E-value=2.3e-15 Score=151.08 Aligned_cols=244 Identities=12% Similarity=0.045 Sum_probs=156.8
Q ss_pred CCeEEEcCCCCCCceEEEecCCEEEEEEEecCCC-ceEEEEEeCCeeEEEEEcCeecccceecEEEEcCCCeEEEEEEeC
Q 009283 188 PDGLVINGRGSNANTFTVDQGKTYRFRISNVGIS-TSINFRIQGHKMLLVEVEGTHTLQNTYDSLDIHLGQSYSVLVRAD 266 (538)
Q Consensus 188 ~~~~liNG~~~~~p~~~v~~G~~~rlRliN~~~~-~~~~~~l~gh~~~via~DG~~~~p~~~~~v~l~pgeR~dv~v~~~ 266 (538)
.+.+++||+.. .|.|+++.|+++++++.|.... ..|.+++|++. +.||... ...|.|||++.+.++++
T Consensus 47 ~~~~~~nG~~p-GP~irv~~Gd~v~v~v~N~~~~~~~h~~h~H~~~----~~dg~~~------~~~I~PG~t~ty~F~~~ 115 (311)
T TIGR02376 47 YQAMTFDGSVP-GPLIRVHEGDYVELTLINPPTNTMPHNVDFHAAT----GALGGAA------LTQVNPGETATLRFKAT 115 (311)
T ss_pred EEEEEECCccc-CceEEEECCCEEEEEEEeCCCCCCceeeeecCCC----ccCCCCc------ceeECCCCeEEEEEEcC
Confidence 45799999973 5999999999999999998632 47888998864 3566431 22389999999999997
Q ss_pred CCCcceEEEEEeec--cCC-ccceEEEEEecCCCCCCCCCCCCCCCccccchhhhhhhhcccCCCCCCCCCCCCCCCccc
Q 009283 267 QPPQGYYIVISTRF--TSQ-VLSATSVLHYSNSAGSVSGPPPGGPTTQIDWSLEQARSLRRNLTASGPRPNPQGSYHYGL 343 (538)
Q Consensus 267 ~~~g~y~i~~~~~~--~~~-~~~~~ail~y~~~~~~~~~~~p~~P~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~ 343 (538)
.+|.||++++... ..+ .....+.|.+..... .+ ..+.+..+. .. ++.+.......
T Consensus 116 -~~Gty~YH~H~~~~~~~q~~~Gl~G~liV~~~~~-----~~---~~d~e~~l~-l~--d~~~~~~~~~~---------- 173 (311)
T TIGR02376 116 -RPGAFVYHCAPPGMVPWHVVSGMNGAIMVLPREG-----LP---EYDKEYYIG-ES--DLYTPKDEGEG---------- 173 (311)
T ss_pred -CCEEEEEEcCCCCchhHHhhcCcceEEEeeccCC-----Cc---CcceeEEEe-ee--eEecccccccc----------
Confidence 7899999998531 111 122344455543221 11 011110000 00 01110000000
Q ss_pred cccceEEEEecccCCCCCeEeEEECCeeecCCCCchhhhcccCCCCccccCCCCCCCCCCCcceeeEEEEccCCcEEEEE
Q 009283 344 INTTHTIRLQNTAPTINGKQRYAVNSVSFIPADTPLKLADYFKIPGVFSVGSIPDNPTGGGAYLQTSVMAADFRGFAEVV 423 (538)
Q Consensus 344 ~~~~~~~~~~~~~~~~~g~~~~~iNg~~f~~p~~P~l~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~v~~~ 423 (538)
..+..............+.|||+.+.. .| .+.++.|++++|.
T Consensus 174 ----~~~~~~~~~~~~~~~~~~~iNG~~~~~--~~--------------------------------~~~v~~G~~~RlR 215 (311)
T TIGR02376 174 ----GAYEDDVAAMRTLTPTHVVFNGAVGAL--TG--------------------------------DNALTAGVGERVL 215 (311)
T ss_pred ----ccccchHHHHhcCCCCEEEECCccCCC--CC--------------------------------CcccccCCcEEEE
Confidence 000000000000112357788875410 00 1245779999999
Q ss_pred EEcCCC-CCCCccccCCCceEEeecCCCCCCCCCCCcCCCCCC-ceeeEEeCCCCEEEEEEEccCcceeeeeecchhhh-
Q 009283 424 FENPED-TLQSWHIDGHNFFAVGMDGGEWTPASRLTYNLRDTI-SRCTVQVYPKSWTAVYVPLDNVGMWNIRSENWARQ- 500 (538)
Q Consensus 424 l~N~~~-~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~-~rDTv~vp~~g~~~irf~adnpG~w~~HCHil~H~- 500 (538)
|.|.+. ..+.||++|++|.++..++....+ +. ..||+.|.||+.+.|.++++.||.|++|||...|.
T Consensus 216 iiNa~~~~~~~~~~~g~~~~~v~~DG~~~~~----------~~~~~~~~~i~PG~R~dv~v~~~~pG~y~~~~~~~~~~~ 285 (311)
T TIGR02376 216 FVHSQPNRDSRPHLIGGHGDYVWVTGKFANP----------PNRDVETWFIPGGSAAAALYTFEQPGVYAYVDHNLIEAF 285 (311)
T ss_pred EEcCCCCCCCCCeEecCCceEEEECCcccCC----------CCCCcceEEECCCceEEEEEEeCCCeEEEEECcHHHHHH
Confidence 999976 569999999999999996543221 22 36999999999999999999999999999999888
Q ss_pred hcceEEEEEEec
Q 009283 501 YLGQQFYLRVYS 512 (538)
Q Consensus 501 d~GMm~~~~V~~ 512 (538)
..||++.++|..
T Consensus 286 ~~g~~~~i~~~g 297 (311)
T TIGR02376 286 EKGAAAQVKVEG 297 (311)
T ss_pred hCCCEEEEEECC
Confidence 679999998853
No 23
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=99.67 E-value=1.9e-16 Score=170.57 Aligned_cols=112 Identities=17% Similarity=0.297 Sum_probs=91.5
Q ss_pred CeEEEEEEEEEEEecCCCeeeEEEEEcCcCcCc--eEEEecCCEEEEEEEeCCCCCceeeeccccCCCCCCCCCCC---C
Q 009283 25 PYRFFNWNVTYGDIYPLGVKQQGILINGQFPGP--SIEAVTNDNLIISVFNALDEPFLISWNGVQQRRNSWQDGVY---G 99 (538)
Q Consensus 25 ~~~~~~l~~~~~~~~~~G~~~~~~~~Ng~~pgP--~i~v~~Gd~v~v~~~N~l~~~~siH~HG~~~~~~~~~DG~~---~ 99 (538)
+.+++++.++. +..+.+|+|||+.+++ .|++++||+|+|+|.|.+..++.|||||+..... ..||.. .
T Consensus 471 p~r~~~~~L~g------~m~~~~wtiNG~~~~~~~pl~v~~Gervri~l~N~t~~~HpmHlHG~~f~v~-~~~G~~~~~~ 543 (587)
T TIGR01480 471 PGREIELHLTG------NMERFAWSFDGEAFGLKTPLRFNYGERLRVVLVNDTMMAHPIHLHGMWSELE-DGQGEFQVRK 543 (587)
T ss_pred CCceEEEEEcC------CCceeEEEECCccCCCCCceEecCCCEEEEEEECCCCCCcceeEcCceeeee-cCCCcccccC
Confidence 44555555522 2357789999998874 7999999999999999999999999999976433 346642 2
Q ss_pred CCCCCCCCCeEEEEEEecCCccceeeecCchhhhhcceeeEEEEe
Q 009283 100 TNCPIPPGKNFTYVLQVKDQIGSYFYFPSLAFHKAAGGYGGIKIA 144 (538)
Q Consensus 100 tq~~i~pG~~~~Y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~ 144 (538)
....|.||++++|+|.+ +++|+||||||...|...||++.+.|.
T Consensus 544 dTv~V~Pg~t~~~~f~a-d~pG~w~~HCH~l~H~~~GM~~~~~v~ 587 (587)
T TIGR01480 544 HTVDVPPGGKRSFRVTA-DALGRWAYHCHMLLHMEAGMFREVTVR 587 (587)
T ss_pred CceeeCCCCEEEEEEEC-CCCeEEEEcCCCHHHHhCcCcEEEEeC
Confidence 23789999999999999 589999999999999999999999873
No 24
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=99.45 E-value=8e-13 Score=113.39 Aligned_cols=110 Identities=16% Similarity=0.155 Sum_probs=81.8
Q ss_pred hhhHHHHHHHHHHHhccccCCCeEEEEEEEE--EEEe---cCCCeeeEEE-EEcCcCcCceEEEecCCEEEEEEEeCCCC
Q 009283 4 YSSICCLLLVFMLVSCTRGESPYRFFNWNVT--YGDI---YPLGVKQQGI-LINGQFPGPSIEAVTNDNLIISVFNALDE 77 (538)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~---~~~G~~~~~~-~~Ng~~pgP~i~v~~Gd~v~v~~~N~l~~ 77 (538)
++.|+++.+=+|++. .+.++.++|+++|. +..+ +..|+....+ ++|+++..+.|+|++||+|+++++|..+.
T Consensus 4 ~~~~~~~~~~~~~~~--~~~~~~~~f~~~i~~~~~~~~~~~~~~~~~~~i~a~n~~~~P~~I~VkaGD~Vtl~vtN~d~~ 81 (135)
T TIGR03096 4 KAMFAGFALGLLLMG--TAQAAEQSFTVVINAYDTTIPELNVEGVTVKNIRAFNVLNEPEALVVKKGTPVKVTVENKSPI 81 (135)
T ss_pred HHHhHHHHHHHhhcc--chhhccceeEEEEeccccEeeEEEeCCEEEEEEEeeeeEEcCCEEEECCCCEEEEEEEeCCCC
Confidence 344555444334433 33334579999999 6655 4578887766 99999999999999999999999998765
Q ss_pred Cc--eeeeccccCCCCCCCCCCCCCCCCCCCCCeEEEEEEecCCccceeeecCch
Q 009283 78 PF--LISWNGVQQRRNSWQDGVYGTNCPIPPGKNFTYVLQVKDQIGSYFYFPSLA 130 (538)
Q Consensus 78 ~~--siH~HG~~~~~~~~~DG~~~tq~~i~pG~~~~Y~f~~~~~~Gt~wYH~H~~ 130 (538)
++ .+++||+ +..|.||++.+|+|++ +++|+|||||-..
T Consensus 82 ~H~f~i~~~gi--------------s~~I~pGet~TitF~a-dKpG~Y~y~C~~H 121 (135)
T TIGR03096 82 SEGFSIDAYGI--------------SEVIKAGETKTISFKA-DKAGAFTIWCQLH 121 (135)
T ss_pred ccceEECCCCc--------------ceEECCCCeEEEEEEC-CCCEEEEEeCCCC
Confidence 43 3444432 2458999999999999 6999999999754
No 25
>PRK10965 multicopper oxidase; Provisional
Probab=99.23 E-value=8.4e-10 Score=118.40 Aligned_cols=229 Identities=17% Similarity=0.211 Sum_probs=139.3
Q ss_pred EEEEEcCcCcCceEEEecCCEEEEEEEeCCC-CCceeee-ccccCCCCCCCCCCCC------CCCCCCCCCeEEEEEEec
Q 009283 46 QGILINGQFPGPSIEAVTNDNLIISVFNALD-EPFLISW-NGVQQRRNSWQDGVYG------TNCPIPPGKNFTYVLQVK 117 (538)
Q Consensus 46 ~~~~~Ng~~pgP~i~v~~Gd~v~v~~~N~l~-~~~siH~-HG~~~~~~~~~DG~~~------tq~~i~pG~~~~Y~f~~~ 117 (538)
..+++||+. .|.+.++ |.++++|+.|... ....+.+ .|.... --..||.+. ....|.|||+++..++++
T Consensus 213 d~~lVNG~~-~p~~~v~-~~~~RlRliNas~~r~~~l~~~dg~~~~-vIa~DG~~l~~P~~v~~l~lapGeR~dvlv~~~ 289 (523)
T PRK10965 213 DTLLTNGAI-YPQHAAP-RGWLRLRLLNGCNARSLNLATSDGRPLY-VIASDGGLLAEPVKVSELPILMGERFEVLVDTS 289 (523)
T ss_pred CeEEECCcc-cceeecC-CCEEEEEEEeccCCceEEEEEcCCceEE-EEEeCCCcccCccEeCeEEECccceEEEEEEcC
Confidence 568999995 7898885 6699999999965 4455665 343222 235898542 234599999999999985
Q ss_pred CCccceeeecCchhhhhcc------eeeEEEEecC--CCC-CCC-----CCC-C------CCceEEEEeeeccc------
Q 009283 118 DQIGSYFYFPSLAFHKAAG------GYGGIKIASR--PLI-PVP-----FDP-P------AGDFTILAGDWYKK------ 170 (538)
Q Consensus 118 ~~~Gt~wYH~H~~~q~~~G------l~G~liV~~~--~~~-~~~-----~~~-~------~~e~~l~l~d~~~~------ 170 (538)
+.|.++...-...+...+ -.-.+.|... ... +.| .+. . .+.+.+.+..+...
T Consensus 290 -~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~P~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~m~~~ 368 (523)
T PRK10965 290 -DGKAFDLVTLPVSQMGMALAPFDKPLPVLRIQPLLISASGTLPDSLASLPALPSLEGLTVRRLQLSMDPRLDMMGMQML 368 (523)
T ss_pred -CCceEEEEEecccCcccccccCCCceeEEEEeccCcCCCCcCChhhccCCCCCcccccceeEEEEeeccccchhhhhhc
Confidence 567776665321111100 1112333311 100 000 000 0 01222222111000
Q ss_pred --Chh-hHHHH---------h--------ccCC--CCCCC---CeEEEcCCCCC--CceEEEecCCEEEEEEEecCCCce
Q 009283 171 --NHT-DLKAI---------L--------DSGS--DLPFP---DGLVINGRGSN--ANTFTVDQGKTYRFRISNVGISTS 223 (538)
Q Consensus 171 --~~~-~~~~~---------~--------~~~~--~~~~~---~~~liNG~~~~--~p~~~v~~G~~~rlRliN~~~~~~ 223 (538)
..+ ..... + ..+. ..... ..++|||+.++ .+.++++.|++.+|+|+|.+....
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ING~~~~~~~~~~~~~~G~~e~w~i~N~~~~~~ 448 (523)
T PRK10965 369 MEKYGDQAMAGMDMDHMMGHMGHGNMDHMNHGAADAGPAFDFHHANKINGKAFDMNKPMFAAKKGQYERWVISGVGDMML 448 (523)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccCCCeECCCCCcceecCCCCEEEEEEEeCCCCCc
Confidence 000 00000 0 0000 00001 12489999874 466789999999999999987557
Q ss_pred EEEEEeCCeeEEEEEcCeeccc---ceecEEEEcCCCeEEEEEEeCC---CCcceEEEEEee
Q 009283 224 INFRIQGHKMLLVEVEGTHTLQ---NTYDSLDIHLGQSYSVLVRADQ---PPQGYYIVISTR 279 (538)
Q Consensus 224 ~~~~l~gh~~~via~DG~~~~p---~~~~~v~l~pgeR~dv~v~~~~---~~g~y~i~~~~~ 279 (538)
|.|||||+.|+|++.||.+..+ ..+|++.+.+ ++.+++++++. .+|.|.++|+..
T Consensus 449 Hp~HlHg~~F~Vl~~~g~~~~~~~~~wkDTv~v~~-~~~~i~~~f~~~~~~~g~~~~HCHiL 509 (523)
T PRK10965 449 HPFHIHGTQFRILSENGKPPAAHRAGWKDTVRVEG-GRSEVLVKFDHDAPKEHAYMAHCHLL 509 (523)
T ss_pred cCeEEeCcEEEEEEecCCCCCccccccccEEEECC-cEEEEEEEecCCCCCCCCEEEEeCch
Confidence 9999999999999999997653 4689999976 88999999973 457899998864
No 26
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=99.21 E-value=6.2e-10 Score=120.63 Aligned_cols=234 Identities=15% Similarity=0.156 Sum_probs=146.8
Q ss_pred CeEEEcCCCCCCceEEEecCCEEEEEEEecCCCceEEEEEeCCeeEEE-EEcCeecccceecEEEEcCCCeEEEEEEeCC
Q 009283 189 DGLVINGRGSNANTFTVDQGKTYRFRISNVGISTSINFRIQGHKMLLV-EVEGTHTLQNTYDSLDIHLGQSYSVLVRADQ 267 (538)
Q Consensus 189 ~~~liNG~~~~~p~~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~vi-a~DG~~~~p~~~~~v~l~pgeR~dv~v~~~~ 267 (538)
..+++||+.. .|.|+++.|+++++++.|.-.. ...+|.||....-- ..||.+- +..-.|.||+.+...+++.+
T Consensus 23 ~~~~~NG~~P-GP~i~~~~GD~v~v~v~N~l~~-~tsiHwHGl~q~~~~~~DGv~~----vTq~pI~PG~s~~Y~f~~~~ 96 (539)
T TIGR03389 23 SILTVNGKFP-GPTLYAREGDTVIVNVTNNVQY-NVTIHWHGVRQLRNGWADGPAY----ITQCPIQPGQSYVYNFTITG 96 (539)
T ss_pred EEEEECCccc-CCEEEEEcCCEEEEEEEeCCCC-CeeEecCCCCCCCCCCCCCCcc----cccCCcCCCCeEEEEEEecC
Confidence 5799999974 6999999999999999999875 56677777542211 2577652 44557899999999999865
Q ss_pred CCcceEEEEEeeccCCccceEEEEEecCCCCCCCCCCCCCCCccc-----cchhhhhhhhcccCCCCCCCCCCCCCCCcc
Q 009283 268 PPQGYYIVISTRFTSQVLSATSVLHYSNSAGSVSGPPPGGPTTQI-----DWSLEQARSLRRNLTASGPRPNPQGSYHYG 342 (538)
Q Consensus 268 ~~g~y~i~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~P~~~~-----~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~ 342 (538)
.+|+||.+.+...... ...+.|.+.+... ...+.+. ...+. +|.......+.
T Consensus 97 ~~GT~WYHsH~~~~~~--Gl~G~lIV~~~~~-~~~~~~~-~d~e~~l~l~Dw~~~~~~~~~------------------- 153 (539)
T TIGR03389 97 QRGTLWWHAHISWLRA--TVYGAIVILPKPG-VPYPFPK-PDREVPIILGEWWNADVEAVI------------------- 153 (539)
T ss_pred CCeeEEEecCchhhhc--cceEEEEEcCCCC-CCCCCCC-CCceEEEEecccccCCHHHHH-------------------
Confidence 7899999998643222 2344444443221 0011100 00000 11100000000
Q ss_pred ccccceEEEEecccCCCCCeEeEEECCeeecCCCCchhhhcccCCCCccccCCCCCCCCCCCcceeeEEEEccCCcEEEE
Q 009283 343 LINTTHTIRLQNTAPTINGKQRYAVNSVSFIPADTPLKLADYFKIPGVFSVGSIPDNPTGGGAYLQTSVMAADFRGFAEV 422 (538)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~g~~~~~iNg~~f~~p~~P~l~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~v~~ 422 (538)
........ ...-...+.|||+.... . .| .+ .....++++.|++++|
T Consensus 154 ----~~~~~~~~---~~~~~d~~liNG~~~~~-----~----------~~------~~------~~~~~i~v~~G~~~Rl 199 (539)
T TIGR03389 154 ----NQANQTGG---APNVSDAYTINGHPGPL-----Y----------NC------SS------KDTFKLTVEPGKTYLL 199 (539)
T ss_pred ----HHHHhcCC---CCCccceEEECCCcCCC-----C----------CC------CC------CCceEEEECCCCEEEE
Confidence 00000000 00011246788875310 0 00 00 0124578899999999
Q ss_pred EEEcCCCC-CCCccccCCCceEEeecCCCCCCCCCCCcCCCCCCceeeEEeCCCCEEEEEEEccC-cceeeeeecc
Q 009283 423 VFENPEDT-LQSWHIDGHNFFAVGMDGGEWTPASRLTYNLRDTISRCTVQVYPKSWTAVYVPLDN-VGMWNIRSEN 496 (538)
Q Consensus 423 ~l~N~~~~-~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adn-pG~w~~HCHi 496 (538)
.|.|.+.. .+-|||+||.|.|++.++. +..|...|++.|.+|+.+.|.++++. +|.|.++-+.
T Consensus 200 RlINa~~~~~~~~~idgH~~~VIa~DG~-----------~~~P~~~~~l~i~~GqRydVlv~a~~~~g~y~i~~~~ 264 (539)
T TIGR03389 200 RIINAALNDELFFAIANHTLTVVEVDAT-----------YTKPFKTKTIVIGPGQTTNVLLTADQSPGRYFMAARP 264 (539)
T ss_pred EEEeccCCceEEEEECCCeEEEEEeCCc-----------ccCceEeCeEEecCCCEEEEEEECCCCCceEEEEEec
Confidence 99999754 4789999999999999753 23467789999999999999999975 8998887654
No 27
>PLN02835 oxidoreductase
Probab=99.17 E-value=1.6e-09 Score=116.68 Aligned_cols=219 Identities=16% Similarity=0.142 Sum_probs=137.3
Q ss_pred CeEEEcCCCCCCceEEEecCCEEEEEEEecCCCceEEEEEeCCeeEE-EEEcCeecccceecEEEEcCCCeEEEEEEeCC
Q 009283 189 DGLVINGRGSNANTFTVDQGKTYRFRISNVGISTSINFRIQGHKMLL-VEVEGTHTLQNTYDSLDIHLGQSYSVLVRADQ 267 (538)
Q Consensus 189 ~~~liNG~~~~~p~~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~v-ia~DG~~~~p~~~~~v~l~pgeR~dv~v~~~~ 267 (538)
..++|||+.. .|.|+++.|+++++++.|.-.. ...+|.||....- -..||.+. ..-.|.||+.++..+++.+
T Consensus 49 ~~~~~NG~~P-GP~I~~~~GD~v~v~v~N~L~~-~ttiHWHGl~~~~~~~~DGv~~-----tQ~pI~PG~sf~Y~F~~~~ 121 (539)
T PLN02835 49 QVILINGQFP-GPRLDVVTNDNIILNLINKLDQ-PFLLTWNGIKQRKNSWQDGVLG-----TNCPIPPNSNYTYKFQTKD 121 (539)
T ss_pred EEEEECCcCC-CCCEEEECCCEEEEEEEeCCCC-CCcEEeCCcccCCCCCCCCCcc-----CcCCCCCCCcEEEEEEECC
Confidence 4799999974 6999999999999999999764 5667777765432 23688642 2457999999999998754
Q ss_pred CCcceEEEEEeeccCCccceEEEEEecCCCCCCCCCCCC-CCCccc-----cchhhhhhhhcccCCCCCCCCCCCCCCCc
Q 009283 268 PPQGYYIVISTRFTSQVLSATSVLHYSNSAGSVSGPPPG-GPTTQI-----DWSLEQARSLRRNLTASGPRPNPQGSYHY 341 (538)
Q Consensus 268 ~~g~y~i~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~-~P~~~~-----~~~~~~~~~~~~~l~~~~~~~~p~~~~~~ 341 (538)
.+|+||++.+.... ......+.|.+..... .+.|. .+..+. ||.......+...+..
T Consensus 122 q~GT~WYHsH~~~q-~~~Gl~G~lIV~~~~~---~~~p~~~~d~e~~l~l~Dw~~~~~~~~~~~~~~------------- 184 (539)
T PLN02835 122 QIGTFTYFPSTLFH-KAAGGFGAINVYERPR---IPIPFPLPDGDFTLLVGDWYKTSHKTLQQRLDS------------- 184 (539)
T ss_pred CCEeEEEEeCccch-hcCcccceeEEeCCCC---CCcCCCCCCceEEEEeeccccCCHHHHHHHhhc-------------
Confidence 68999999875321 1112233333322110 01110 000000 1111000000000000
Q ss_pred cccccceEEEEecccCCCCCeEeEEECCeeecCCCCchhhhcccCCCCccccCCCCCCCCCCCcceeeEEEEccCCcEEE
Q 009283 342 GLINTTHTIRLQNTAPTINGKQRYAVNSVSFIPADTPLKLADYFKIPGVFSVGSIPDNPTGGGAYLQTSVMAADFRGFAE 421 (538)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~g~~~~~iNg~~f~~p~~P~l~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~v~ 421 (538)
.. ...-.....|||+.. ..++++.|++++
T Consensus 185 -----------g~---~~~~~d~~liNG~~~-------------------------------------~~~~v~~G~~yR 213 (539)
T PLN02835 185 -----------GK---VLPFPDGVLINGQTQ-------------------------------------STFSGDQGKTYM 213 (539)
T ss_pred -----------CC---CCCCCceEEEccccC-------------------------------------ceEEECCCCEEE
Confidence 00 000012355666431 125678899999
Q ss_pred EEEEcCCCC-CCCccccCCCceEEeecCCCCCCCCCCCcCCCCCCceeeEEeCCCCEEEEEEEccC-cceeeee
Q 009283 422 VVFENPEDT-LQSWHIDGHNFFAVGMDGGEWTPASRLTYNLRDTISRCTVQVYPKSWTAVYVPLDN-VGMWNIR 493 (538)
Q Consensus 422 ~~l~N~~~~-~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adn-pG~w~~H 493 (538)
|.|.|.+.. ..-|||.||+|.|++.++.. ..|...|++.|.+|+...+.++++. +|.|-++
T Consensus 214 lRliNa~~~~~~~f~i~gH~~~VI~~DG~~-----------v~p~~~~~l~i~~GqRydvlv~~~~~~g~y~i~ 276 (539)
T PLN02835 214 FRISNVGLSTSLNFRIQGHTMKLVEVEGSH-----------TIQNIYDSLDVHVGQSVAVLVTLNQSPKDYYIV 276 (539)
T ss_pred EEEEEcCCCccEEEEECCCEEEEEEECCcc-----------CCCceeeEEEECcCceEEEEEEcCCCCCcEEEE
Confidence 999999865 58999999999999997642 2345679999999999999999964 6877665
No 28
>PRK10883 FtsI repressor; Provisional
Probab=99.10 E-value=4.4e-09 Score=111.81 Aligned_cols=218 Identities=17% Similarity=0.156 Sum_probs=132.1
Q ss_pred eeEEEEEcCcCcCceEEEecCCEEEEEEEeCCC-CCceeee-ccccCCCCCCCCCCCC------CCCCCCCCCeEEEEEE
Q 009283 44 KQQGILINGQFPGPSIEAVTNDNLIISVFNALD-EPFLISW-NGVQQRRNSWQDGVYG------TNCPIPPGKNFTYVLQ 115 (538)
Q Consensus 44 ~~~~~~~Ng~~pgP~i~v~~Gd~v~v~~~N~l~-~~~siH~-HG~~~~~~~~~DG~~~------tq~~i~pG~~~~Y~f~ 115 (538)
....+++||+. .|.|.|+.| ++++|+.|... ....+++ .|.... --..||-+. .+..|.||++++.-.+
T Consensus 208 ~gd~~lvNG~~-~p~~~v~~~-~~RlRliNas~~~~~~l~l~d~~~~~-vIa~DGg~~~~P~~~~~l~l~pGeR~dvlVd 284 (471)
T PRK10883 208 VGDTLLVNGVQ-SPYVEVSRG-WVRLRLLNASNARRYQLQMSDGRPLH-VIAGDQGFLPAPVSVKQLSLAPGERREILVD 284 (471)
T ss_pred cCCeeEECCcc-CCeEEecCC-EEEEEEEEccCCceEEEEEcCCCeEE-EEEeCCCcccCCcEeCeEEECCCCeEEEEEE
Confidence 34678999985 799999875 89999999976 4567777 554322 135785432 2355999999999999
Q ss_pred ecCCccceeeecCchhhhhcceeeE------------EEEecCCCCCCCCCCCCCceEEEEeeecccChhhHHH-HhccC
Q 009283 116 VKDQIGSYFYFPSLAFHKAAGGYGG------------IKIASRPLIPVPFDPPAGDFTILAGDWYKKNHTDLKA-ILDSG 182 (538)
Q Consensus 116 ~~~~~Gt~wYH~H~~~q~~~Gl~G~------------liV~~~~~~~~~~~~~~~e~~l~l~d~~~~~~~~~~~-~~~~~ 182 (538)
+. +.+.+.+++-......+++.+. +-++...... .. ....+..+............. .+..
T Consensus 285 ~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~p~~l~~~~~~~~~~~~~~~~~l- 358 (471)
T PRK10883 285 MS-NGDEVSITAGEAAGIVDRLRGFFEPSSILVSTLVLTLRPTGLLP-LV---TDNLPMRLLPDEIMEGSPIRSREISL- 358 (471)
T ss_pred CC-CCceEEEECCCccccccccccccCCccccccceeEEEEcccccc-CC---CCcCChhhcCCCCCCCCCcceEEEEe-
Confidence 84 5567777663211111111111 1111111000 00 000010000000000000000 0000
Q ss_pred CCCCCCCeEEEcCCCCCCc--eEEEecCCEEEEEEEecCCCceEEEEEeCCeeEEEEEcCeeccc---ceecEEEEcCCC
Q 009283 183 SDLPFPDGLVINGRGSNAN--TFTVDQGKTYRFRISNVGISTSINFRIQGHKMLLVEVEGTHTLQ---NTYDSLDIHLGQ 257 (538)
Q Consensus 183 ~~~~~~~~~liNG~~~~~p--~~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~~p---~~~~~v~l~pge 257 (538)
..+.++|||+.++.. .++++.|++++|+|.|.. .|.||||++.|+|++.||....+ ...|++.+ + +
T Consensus 359 ----~~~~~~INg~~~~~~~~~~~~~~g~~e~W~~~n~~---~HP~HlHg~~FqVl~~~G~~~~~~~~gwkDTV~v-~-~ 429 (471)
T PRK10883 359 ----GDDLPGINGALWDMNRIDVTAQQGTWERWTVRADM---PQAFHIEGVMFLIRNVNGAMPFPEDRGWKDTVWV-D-G 429 (471)
T ss_pred ----cCCcCccCCcccCCCcceeecCCCCEEEEEEECCC---CcCEeECCccEEEEEecCCCCCccccCcCcEEEc-C-C
Confidence 012347999987543 468999999999998862 69999999999999999986543 35799999 3 5
Q ss_pred eEEEEEEeCCCCc---ceEEEEEee
Q 009283 258 SYSVLVRADQPPQ---GYYIVISTR 279 (538)
Q Consensus 258 R~dv~v~~~~~~g---~y~i~~~~~ 279 (538)
++.+++++++..| .|.++|+..
T Consensus 430 ~v~i~~~f~~~~~~~~~~m~HCHiL 454 (471)
T PRK10883 430 QVELLVYFGQPSWAHFPFLFYSQTL 454 (471)
T ss_pred eEEEEEEecCCCCCCCcEEeecccc
Confidence 7999999995444 688888764
No 29
>PLN02354 copper ion binding / oxidoreductase
Probab=99.09 E-value=4e-09 Score=113.81 Aligned_cols=228 Identities=14% Similarity=0.113 Sum_probs=142.6
Q ss_pred CeEEEcCCCCCCceEEEecCCEEEEEEEecCCCceEEEEEeCCeeEEE-EEcCeecccceecEEEEcCCCeEEEEEEeCC
Q 009283 189 DGLVINGRGSNANTFTVDQGKTYRFRISNVGISTSINFRIQGHKMLLV-EVEGTHTLQNTYDSLDIHLGQSYSVLVRADQ 267 (538)
Q Consensus 189 ~~~liNG~~~~~p~~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~vi-a~DG~~~~p~~~~~v~l~pgeR~dv~v~~~~ 267 (538)
..++|||+.. .|.|+++.|+++++++.|.... ...+|.||....-. ..||.+. ..-.|.||+.+...+++++
T Consensus 47 ~~~~iNGq~P-GP~I~~~~GD~v~V~v~N~l~~-~ttiHWHGi~q~~~~~~DGv~~-----TQcpI~PG~sf~Y~F~~~~ 119 (552)
T PLN02354 47 QVILINGQFP-GPNINSTSNNNIVINVFNNLDE-PFLLTWSGIQQRKNSWQDGVPG-----TNCPIPPGTNFTYHFQPKD 119 (552)
T ss_pred EEEEECCCCc-CCcEEEeCCCEEEEEEEECCCC-CcccccccccCCCCcccCCCcC-----CcCCCCCCCcEEEEEEeCC
Confidence 4799999974 6999999999999999999754 55566666543322 3788652 3458999999999999864
Q ss_pred CCcceEEEEEeeccCCccceEEEEEecCCCCCCCCCCCC-CCCccc-----cchhhhhhhhcccCCCCCCCCCCCCCCCc
Q 009283 268 PPQGYYIVISTRFTSQVLSATSVLHYSNSAGSVSGPPPG-GPTTQI-----DWSLEQARSLRRNLTASGPRPNPQGSYHY 341 (538)
Q Consensus 268 ~~g~y~i~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~-~P~~~~-----~~~~~~~~~~~~~l~~~~~~~~p~~~~~~ 341 (538)
.+|+||.+.+....- .....+.|.+.+... .+.|- .+..+. ||.......+...+.
T Consensus 120 q~GT~WYHsH~~~Q~-~~Gl~G~lII~~~~~---~~~p~~~~d~e~~l~l~Dw~~~~~~~~~~~~~-------------- 181 (552)
T PLN02354 120 QIGSYFYYPSTGMHR-AAGGFGGLRVNSRLL---IPVPYADPEDDYTVLIGDWYTKSHTALKKFLD-------------- 181 (552)
T ss_pred CCcceEEecCcccee-cCCccceEEEcCCcC---CCCCCCCcCceEEEEeeeeccCCHHHHHHHHh--------------
Confidence 689999998753211 112333343433221 01111 000010 111100000000000
Q ss_pred cccccceEEEEecccCCCCCeEeEEECCeeecCCCCchhhhcccCCCCccccCCCCCCCCCCCcceeeEEEEccCCcEEE
Q 009283 342 GLINTTHTIRLQNTAPTINGKQRYAVNSVSFIPADTPLKLADYFKIPGVFSVGSIPDNPTGGGAYLQTSVMAADFRGFAE 421 (538)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~g~~~~~iNg~~f~~p~~P~l~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~v~ 421 (538)
... ..+......|||+..... . .....++++.|++++
T Consensus 182 ----------~g~---~~~~~d~~liNG~~~~~~----------------~--------------~~~~~~~v~~Gk~yR 218 (552)
T PLN02354 182 ----------SGR---TLGRPDGVLINGKSGKGD----------------G--------------KDEPLFTMKPGKTYR 218 (552)
T ss_pred ----------cCC---CCCCCCeEEEeCCcCCCC----------------C--------------CCceEEEECCCCEEE
Confidence 000 000112456777642100 0 013457889999999
Q ss_pred EEEEcCCCC-CCCccccCCCceEEeecCCCCCCCCCCCcCCCCCCceeeEEeCCCCEEEEEEEccC-cceeeeeec
Q 009283 422 VVFENPEDT-LQSWHIDGHNFFAVGMDGGEWTPASRLTYNLRDTISRCTVQVYPKSWTAVYVPLDN-VGMWNIRSE 495 (538)
Q Consensus 422 ~~l~N~~~~-~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adn-pG~w~~HCH 495 (538)
|.|.|.+.. ..-||+.||.|.||+.++.. ..|...|++.|.+|++..+.++++. +|.|-+.-.
T Consensus 219 lRiINa~~~~~~~f~IdgH~~tVIa~DG~~-----------v~p~~~~~l~i~~GqRydVlv~a~~~~g~Y~i~a~ 283 (552)
T PLN02354 219 YRICNVGLKSSLNFRIQGHKMKLVEMEGSH-----------VLQNDYDSLDVHVGQCFSVLVTANQAPKDYYMVAS 283 (552)
T ss_pred EEEEecCCCceEEEEECCceEEEEEeCCcc-----------cCCcceeEEEEccCceEEEEEECCCCCCcEEEEEe
Confidence 999999865 48899999999999997632 2345579999999999999999974 788777655
No 30
>PLN02792 oxidoreductase
Probab=99.08 E-value=5.1e-09 Score=112.48 Aligned_cols=224 Identities=14% Similarity=0.140 Sum_probs=137.8
Q ss_pred CeEEEcCCCCCCceEEEecCCEEEEEEEecCCCceEEEEEeCCeeEEE-EEcCeecccceecEEEEcCCCeEEEEEEeCC
Q 009283 189 DGLVINGRGSNANTFTVDQGKTYRFRISNVGISTSINFRIQGHKMLLV-EVEGTHTLQNTYDSLDIHLGQSYSVLVRADQ 267 (538)
Q Consensus 189 ~~~liNG~~~~~p~~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~vi-a~DG~~~~p~~~~~v~l~pgeR~dv~v~~~~ 267 (538)
..++|||+.. .|.|+++.|+++++++.|-... ...+|.||....-- ..||.+. .+-.|.||+.+...+++++
T Consensus 36 ~~~~vNGq~P-GP~I~~~~GD~v~V~v~N~L~~-~ttiHWHGl~q~~~~~~DGv~~-----tqcPI~PG~sftY~F~~~~ 108 (536)
T PLN02792 36 RGILINGQFP-GPEIRSLTNDNLVINVHNDLDE-PFLLSWNGVHMRKNSYQDGVYG-----TTCPIPPGKNYTYDFQVKD 108 (536)
T ss_pred EEEEECCCCC-CCcEEEECCCEEEEEEEeCCCC-CcCEeCCCcccCCCCccCCCCC-----CcCccCCCCcEEEEEEeCC
Confidence 4799999974 6999999999999999998764 55555555443222 2799642 2368999999999999865
Q ss_pred CCcceEEEEEeeccCCccceEEEEEecCCCCCCCCCCCCCCCccc-----cchhhhhhhhcccCCCCCCCCCCCCCCCcc
Q 009283 268 PPQGYYIVISTRFTSQVLSATSVLHYSNSAGSVSGPPPGGPTTQI-----DWSLEQARSLRRNLTASGPRPNPQGSYHYG 342 (538)
Q Consensus 268 ~~g~y~i~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~P~~~~-----~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~ 342 (538)
.+|+||.+.+..... ....++-|.+..... ...+.+. +..+. ||.......+.
T Consensus 109 q~GT~WYHsH~~~q~-~~Gl~G~liI~~~~~-~~~p~~~-~d~e~~i~l~Dw~~~~~~~~~------------------- 166 (536)
T PLN02792 109 QVGSYFYFPSLAVQK-AAGGYGSLRIYSLPR-IPVPFPE-PAGDFTFLIGDWYRRNHTTLK------------------- 166 (536)
T ss_pred CccceEEecCcchhh-hcccccceEEeCCcc-cCcCCCc-ccceeEEEecccccCCHHHHH-------------------
Confidence 699999999864211 112333332222110 0011110 10110 11100000000
Q ss_pred ccccceEEEEecccCCCCCeEeEEECCeeecCCCCchhhhcccCCCCccccCCCCCCCCCCCcceeeEEEEccCCcEEEE
Q 009283 343 LINTTHTIRLQNTAPTINGKQRYAVNSVSFIPADTPLKLADYFKIPGVFSVGSIPDNPTGGGAYLQTSVMAADFRGFAEV 422 (538)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~g~~~~~iNg~~f~~p~~P~l~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~v~~ 422 (538)
..+..... ...-.....|||+... ....++++.|++++|
T Consensus 167 -----~~~~~g~~--~~~~~d~~liNG~~~~----------------------------------~~~~~~v~~Gk~yRl 205 (536)
T PLN02792 167 -----KILDGGRK--LPLMPDGVMINGQGVS----------------------------------YVYSITVDKGKTYRF 205 (536)
T ss_pred -----HHhhccCc--CCCCCCEEEEeccCCC----------------------------------CcceEEECCCCEEEE
Confidence 00000000 0001123567775310 013467889999999
Q ss_pred EEEcCCCC-CCCccccCCCceEEeecCCCCCCCCCCCcCCCCCCceeeEEeCCCCEEEEEEEccC-cceeeee
Q 009283 423 VFENPEDT-LQSWHIDGHNFFAVGMDGGEWTPASRLTYNLRDTISRCTVQVYPKSWTAVYVPLDN-VGMWNIR 493 (538)
Q Consensus 423 ~l~N~~~~-~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adn-pG~w~~H 493 (538)
.|.|.+.. ..-|+|.||.|.|++.++.. ..|...|++.|.+|+.+.+.++++. +|.|-+.
T Consensus 206 RliNa~~~~~~~f~i~gH~~tVI~~DG~~-----------v~p~~~~~l~i~~GqRydVlV~a~~~~g~Y~i~ 267 (536)
T PLN02792 206 RISNVGLQTSLNFEILGHQLKLIEVEGTH-----------TVQSMYTSLDIHVGQTYSVLVTMDQPPQNYSIV 267 (536)
T ss_pred EEEEcCCCceEEEEECCcEEEEEEeCCcc-----------CCCcceeEEEEccCceEEEEEEcCCCCceEEEE
Confidence 99999865 48999999999999997632 2355669999999999999999976 5776655
No 31
>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type. This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.
Probab=99.06 E-value=7.8e-09 Score=111.79 Aligned_cols=237 Identities=15% Similarity=0.138 Sum_probs=146.1
Q ss_pred CeEEEcCCCCCCceEEEecCCEEEEEEEecCCCceEEEEEeCCeeEE-EEEcCeecccceecEEEEcCCCeEEEEEEeC-
Q 009283 189 DGLVINGRGSNANTFTVDQGKTYRFRISNVGISTSINFRIQGHKMLL-VEVEGTHTLQNTYDSLDIHLGQSYSVLVRAD- 266 (538)
Q Consensus 189 ~~~liNG~~~~~p~~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~v-ia~DG~~~~p~~~~~v~l~pgeR~dv~v~~~- 266 (538)
..++|||+.. .|.|+++.|+++++++.|.-......+|.||..+.- -..||.+. +..-.|.||+.+...++++
T Consensus 28 ~~~~~NG~~P-GP~I~~~~GD~v~V~v~N~L~~~~ttiHwHGi~~~~~~~~DGvp~----vTQcpI~PG~sf~Y~f~~~~ 102 (538)
T TIGR03390 28 YSVVVNGTSP-GPEIRLQEGQTTWIRVYNDIPDNNVTMHWHGLTQRTAPFSDGTPL----ASQWPIPPGHFFDYEIKPEP 102 (538)
T ss_pred EEEEECCcCC-CCeEEEeCCCEEEEEEEECCCCCCceEECCCCCCCCCCCCCCCcc----cccCCCCCCCcEEEEEEecC
Confidence 4799999974 699999999999999999865445677777765432 23688875 3444689999999999875
Q ss_pred CCCcceEEEEEeeccCCccceEEEEEecCCCCCCCCCCCCCCCccc-----cchhhhhhhhcccCCCCCCCCCCCCCCCc
Q 009283 267 QPPQGYYIVISTRFTSQVLSATSVLHYSNSAGSVSGPPPGGPTTQI-----DWSLEQARSLRRNLTASGPRPNPQGSYHY 341 (538)
Q Consensus 267 ~~~g~y~i~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~P~~~~-----~~~~~~~~~~~~~l~~~~~~~~p~~~~~~ 341 (538)
..+|+||++.+... |.....+.|.+.+.... +... ..+. ||.......+...+
T Consensus 103 ~q~GT~WYHsH~~~--Q~~~l~G~lIV~~~~~~---~~~~--d~e~~l~l~Dw~~~~~~~~~~~~--------------- 160 (538)
T TIGR03390 103 GDAGSYFYHSHVGF--QAVTAFGPLIVEDCEPP---PYKY--DDERILLVSDFFSATDEEIEQGL--------------- 160 (538)
T ss_pred CCCeeeEEecCCch--hhhcceeEEEEccCCcc---CCCc--cCcEEEEEeCCCCCCHHHHHhhh---------------
Confidence 36899999988643 21224455555433210 0000 0000 11111000000000
Q ss_pred cccccceEEEEecccCCCCCeEeEEECCeeecCCCCchhhhcccCCCCccccCCCCCCCCCCCcceeeEEEEccCCcEEE
Q 009283 342 GLINTTHTIRLQNTAPTINGKQRYAVNSVSFIPADTPLKLADYFKIPGVFSVGSIPDNPTGGGAYLQTSVMAADFRGFAE 421 (538)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~g~~~~~iNg~~f~~p~~P~l~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~v~ 421 (538)
.... ...........|||+.......... + . ...| ....++++.|++++
T Consensus 161 ---------~~~~-~~~~~~~d~~liNG~~~~~~~~~~~-----------~-------~--~~~~-~~~~~~v~~G~~yR 209 (538)
T TIGR03390 161 ---------LSTP-FTWSGETEAVLLNGKSGNKSFYAQI-----------N-------P--SGSC-MLPVIDVEPGKTYR 209 (538)
T ss_pred ---------hccC-CccCCCCceEEECCccccccccccc-----------c-------C--CCCC-cceEEEECCCCEEE
Confidence 0000 0000011246788864211000000 0 0 0111 13468899999999
Q ss_pred EEEEcCCCC-CCCccccCCC-ceEEeecCCCCCCCCCCCcCCCCCCceeeEEeCCCCEEEEEEEccCc--------ceee
Q 009283 422 VVFENPEDT-LQSWHIDGHN-FFAVGMDGGEWTPASRLTYNLRDTISRCTVQVYPKSWTAVYVPLDNV--------GMWN 491 (538)
Q Consensus 422 ~~l~N~~~~-~HP~HlHG~~-F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adnp--------G~w~ 491 (538)
|.|.|.+.. ..-|+|.||. |+|++.++. +..|...|++.|.+|+.+.|.++++.+ |.|.
T Consensus 210 lRlINa~~~~~~~~~idgH~~~~VIa~DG~-----------~~~P~~v~~l~l~~GqRydVlv~~~~~~~~~~~~~~~Y~ 278 (538)
T TIGR03390 210 LRFIGATALSLISLGIEDHENLTIIEADGS-----------YTKPAKIDHLQLGGGQRYSVLFKAKTEDELCGGDKRQYF 278 (538)
T ss_pred EEEEccCCceEEEEEECCCCeEEEEEeCCC-----------CCCceEeCeEEEccCCEEEEEEECCCccccccCCCCcEE
Confidence 999999865 4789999999 999999763 245678899999999999999999763 6665
Q ss_pred eee
Q 009283 492 IRS 494 (538)
Q Consensus 492 ~HC 494 (538)
+.-
T Consensus 279 ir~ 281 (538)
T TIGR03390 279 IQF 281 (538)
T ss_pred EEE
Confidence 553
No 32
>PLN02991 oxidoreductase
Probab=99.06 E-value=5.3e-09 Score=112.28 Aligned_cols=219 Identities=14% Similarity=0.164 Sum_probs=138.0
Q ss_pred CeEEEcCCCCCCceEEEecCCEEEEEEEecCCCceEEEEEeCCeeEE-EEEcCeecccceecEEEEcCCCeEEEEEEeCC
Q 009283 189 DGLVINGRGSNANTFTVDQGKTYRFRISNVGISTSINFRIQGHKMLL-VEVEGTHTLQNTYDSLDIHLGQSYSVLVRADQ 267 (538)
Q Consensus 189 ~~~liNG~~~~~p~~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~v-ia~DG~~~~p~~~~~v~l~pgeR~dv~v~~~~ 267 (538)
..++|||+.. .|.|+++.|+++++++.|.... ...+|.||....- -..||.+. .+-.|.||+.+...+++++
T Consensus 48 ~~~~vNG~~P-GP~I~~~~GD~v~V~V~N~L~~-~ttiHWHGi~q~~~~~~DGv~~-----tQcpI~PG~sftY~F~~~~ 120 (543)
T PLN02991 48 QGILINGKFP-GPDIISVTNDNLIINVFNHLDE-PFLISWSGIRNWRNSYQDGVYG-----TTCPIPPGKNYTYALQVKD 120 (543)
T ss_pred EEEEEcCCCC-CCcEEEECCCEEEEEecCCCCC-CccEEECCcccCCCccccCCCC-----CCCccCCCCcEEEEEEeCC
Confidence 4799999974 6999999999999999999764 5667777765421 24799642 2457999999999999965
Q ss_pred CCcceEEEEEeeccCCccceEEEEEecCCCCCCCCCCCC-CCCccc-----cchhhhhhhhcccCCCCCCCCCCCCCCCc
Q 009283 268 PPQGYYIVISTRFTSQVLSATSVLHYSNSAGSVSGPPPG-GPTTQI-----DWSLEQARSLRRNLTASGPRPNPQGSYHY 341 (538)
Q Consensus 268 ~~g~y~i~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~-~P~~~~-----~~~~~~~~~~~~~l~~~~~~~~p~~~~~~ 341 (538)
.+|+||++.+..... .....+.|.+.+... .+.|. .+..+. ||.......+...+.
T Consensus 121 q~GT~WYHsH~~~q~-~~Gl~G~lIV~~~~~---~~~p~~~~d~d~~i~l~DW~~~~~~~~~~~~~-------------- 182 (543)
T PLN02991 121 QIGSFYYFPSLGFHK-AAGGFGAIRISSRPL---IPVPFPAPADDYTVLIGDWYKTNHKDLRAQLD-------------- 182 (543)
T ss_pred CCcceEEecCcchhh-hCCCeeeEEEeCCcc---cCcccccccceeEEEecceecCCHHHHHHHhh--------------
Confidence 789999999864221 112344444433211 11111 010010 111100000000000
Q ss_pred cccccceEEEEecccCCCCCeEeEEECCeeecCCCCchhhhcccCCCCccccCCCCCCCCCCCcceeeEEEEccCCcEEE
Q 009283 342 GLINTTHTIRLQNTAPTINGKQRYAVNSVSFIPADTPLKLADYFKIPGVFSVGSIPDNPTGGGAYLQTSVMAADFRGFAE 421 (538)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~g~~~~~iNg~~f~~p~~P~l~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~v~ 421 (538)
... ...-.....|||+.. ...++++.|++++
T Consensus 183 ----------~~~---~~~~~d~~liNG~~~------------------------------------~~~~~v~~G~~yR 213 (543)
T PLN02991 183 ----------NGG---KLPLPDGILINGRGS------------------------------------GATLNIEPGKTYR 213 (543)
T ss_pred ----------cCC---CCCCCCEEEEccCCC------------------------------------CceEEECCCCEEE
Confidence 000 000012345666531 1236788999999
Q ss_pred EEEEcCCCCC-CCccccCCCceEEeecCCCCCCCCCCCcCCCCCCceeeEEeCCCCEEEEEEEccC-cc-eeee
Q 009283 422 VVFENPEDTL-QSWHIDGHNFFAVGMDGGEWTPASRLTYNLRDTISRCTVQVYPKSWTAVYVPLDN-VG-MWNI 492 (538)
Q Consensus 422 ~~l~N~~~~~-HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adn-pG-~w~~ 492 (538)
|.|.|.+... +-|+|.||.|+|++.++.. ..|...|++.|.+|+...+.+++|. +| .|+.
T Consensus 214 lRiINa~~~~~~~~~idgH~~tVIa~DG~~-----------~~p~~~~~l~i~~GQRydvlv~a~~~~~~y~i~ 276 (543)
T PLN02991 214 LRISNVGLQNSLNFRIQNHTMKLVEVEGTH-----------TIQTPFSSLDVHVGQSYSVLITADQPAKDYYIV 276 (543)
T ss_pred EEEEeccCCeeEEEEECCCEEEEEEeCCcc-----------ccceeeeEEEEcCCcEEEEEEECCCCCCcEEEE
Confidence 9999998754 7999999999999997532 3356679999999999999999976 46 3544
No 33
>PLN02168 copper ion binding / pectinesterase
Probab=99.04 E-value=1e-08 Score=110.20 Aligned_cols=220 Identities=13% Similarity=0.096 Sum_probs=134.3
Q ss_pred CeEEEcCCCCCCceEEEecCCEEEEEEEecCCCceEEEEEeCCeeEEE-EEcCeecccceecEEEEcCCCeEEEEEEeCC
Q 009283 189 DGLVINGRGSNANTFTVDQGKTYRFRISNVGISTSINFRIQGHKMLLV-EVEGTHTLQNTYDSLDIHLGQSYSVLVRADQ 267 (538)
Q Consensus 189 ~~~liNG~~~~~p~~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~vi-a~DG~~~~p~~~~~v~l~pgeR~dv~v~~~~ 267 (538)
..+++||+.. .|.|+++.|+++++++.|.-.. ...+|.||....-- ..||.+- .+-.|.||+++...+++++
T Consensus 46 ~~~~vNG~~P-GP~I~~~~GD~v~V~v~N~L~~-~ttiHWHGl~~~~~~~~DGv~g-----tQcpI~PG~sftY~F~~~~ 118 (545)
T PLN02168 46 QVIVINDMFP-GPLLNATANDVINVNIFNNLTE-PFLMTWNGLQLRKNSWQDGVRG-----TNCPILPGTNWTYRFQVKD 118 (545)
T ss_pred EEEEECCcCC-CCcEEEECCCEEEEEEEeCCCC-CccEeeCCccCCCCCCcCCCCC-----CcCCCCCCCcEEEEEEeCC
Confidence 4689999974 6999999999999999999865 56677777543222 2588652 3357999999999999965
Q ss_pred CCcceEEEEEeeccCCccceEEEEEecCCCCCCCCCCCCCCCccccchhhhhhhhcccCCCCCCCCCCCCCCCccccccc
Q 009283 268 PPQGYYIVISTRFTSQVLSATSVLHYSNSAGSVSGPPPGGPTTQIDWSLEQARSLRRNLTASGPRPNPQGSYHYGLINTT 347 (538)
Q Consensus 268 ~~g~y~i~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~P~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~ 347 (538)
.+|+||.+.+.... ......+.|.+.+... ...+.+. +..+....+. ++.... .. ...
T Consensus 119 q~GT~WYHsH~~~Q-~~~GL~G~lII~~~~~-~~~p~~~-~d~e~~l~l~-----Dw~~~~------~~--------~~~ 176 (545)
T PLN02168 119 QIGSYFYFPSLLLQ-KAAGGYGAIRIYNPEL-VPVPFPK-PDEEYDILIG-----DWFYAD------HT--------VMR 176 (545)
T ss_pred CCceEEEecChhhh-hhCcceeEEEEcCCcc-cCcCcCc-ccceeeEEEE-----ecCCCC------HH--------HHH
Confidence 69999999876421 1122334444443221 0111110 1011100000 000000 00 000
Q ss_pred eEEEEecccCCCCCeEeEEECCeeecCCCCchhhhcccCCCCccccCCCCCCCCCCCcceeeEEEEccCCcEEEEEEEcC
Q 009283 348 HTIRLQNTAPTINGKQRYAVNSVSFIPADTPLKLADYFKIPGVFSVGSIPDNPTGGGAYLQTSVMAADFRGFAEVVFENP 427 (538)
Q Consensus 348 ~~~~~~~~~~~~~g~~~~~iNg~~f~~p~~P~l~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~v~~~l~N~ 427 (538)
. .+..... ........|||+.-. ...++++.|++++|.|.|.
T Consensus 177 ~--~~~~g~~-~~~~d~~liNG~~~~-----------------------------------~~~~~v~~G~~yRlRiiNa 218 (545)
T PLN02168 177 A--SLDNGHS-LPNPDGILFNGRGPE-----------------------------------ETFFAFEPGKTYRLRISNV 218 (545)
T ss_pred h--hhhcCCC-CCCCCEEEEeccCCC-----------------------------------cceEEeCCCCEEEEEEEec
Confidence 0 0000000 000123556664310 1246788899999999998
Q ss_pred CCC-CCCccccCCCceEEeecCCCCCCCCCCCcCCCCCCceeeEEeCCCCEEEEEEEccC
Q 009283 428 EDT-LQSWHIDGHNFFAVGMDGGEWTPASRLTYNLRDTISRCTVQVYPKSWTAVYVPLDN 486 (538)
Q Consensus 428 ~~~-~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adn 486 (538)
+.. .+-|+|.||+|+|++.++.. ..|...|++.|.+|+.+.+.+++++
T Consensus 219 ~~~~~~~~~IdgH~~tVIa~DG~~-----------v~p~~~~~l~i~~GqRydvlv~a~~ 267 (545)
T PLN02168 219 GLKTCLNFRIQDHDMLLVETEGTY-----------VQKRVYSSLDIHVGQSYSVLVTAKT 267 (545)
T ss_pred cCCceEEEEECCcEEEEEEECCeE-----------CCCceeeEEEEcCCceEEEEEEcCC
Confidence 865 58999999999999987532 3355679999999999999999964
No 34
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=98.95 E-value=3.1e-08 Score=107.17 Aligned_cols=232 Identities=15% Similarity=0.212 Sum_probs=140.9
Q ss_pred CeEEEcCCCCCCceEEEecCCEEEEEEEecCCCceEEEEEeCCeeEEE-EEcCeecccceecEEEEcCCCeEEEEEEeCC
Q 009283 189 DGLVINGRGSNANTFTVDQGKTYRFRISNVGISTSINFRIQGHKMLLV-EVEGTHTLQNTYDSLDIHLGQSYSVLVRADQ 267 (538)
Q Consensus 189 ~~~liNG~~~~~p~~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~vi-a~DG~~~~p~~~~~v~l~pgeR~dv~v~~~~ 267 (538)
..++|||+.. .|.|+++.|+++++++.|.... ...+|.||.....- ..||.+ . ..-.|.||+.+...+++++
T Consensus 49 ~vi~vNGq~P-GPtI~~~~GD~v~V~V~N~L~~-~ttIHWHGl~q~~t~w~DGv~---~--TQcPI~PG~sftY~F~~~d 121 (596)
T PLN00044 49 EAIGINGQFP-GPALNVTTNWNLVVNVRNALDE-PLLLTWHGVQQRKSAWQDGVG---G--TNCAIPAGWNWTYQFQVKD 121 (596)
T ss_pred EEEEEcCcCC-CCcEEEECCCEEEEEEEeCCCC-CccEEECCccCCCCccccCCC---C--CcCCcCCCCcEEEEEEeCC
Confidence 4689999974 6999999999999999999764 67778888654432 479864 2 4468999999999999965
Q ss_pred CCcceEEEEEeeccCCccceEEEEEecCCCCCCCCCCCCCCC-ccc-----cchhhhhhhhcccCCCCCCCCCCCCCCCc
Q 009283 268 PPQGYYIVISTRFTSQVLSATSVLHYSNSAGSVSGPPPGGPT-TQI-----DWSLEQARSLRRNLTASGPRPNPQGSYHY 341 (538)
Q Consensus 268 ~~g~y~i~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~P~-~~~-----~~~~~~~~~~~~~l~~~~~~~~p~~~~~~ 341 (538)
.+|+||.+.+.... ......+.|.+.+... .+.|.+. +. .+. ||.......+...+.
T Consensus 122 q~GT~WYHsH~~~Q-~~~Gl~GalII~~~~~-~~~P~~~-~~~~e~~i~l~DW~~~~~~~~~~~l~-------------- 184 (596)
T PLN00044 122 QVGSFFYAPSTALH-RAAGGYGAITINNRDV-IPIPFGF-PDGGDITLFIADWYARDHRALRRALD-------------- 184 (596)
T ss_pred CCceeEeeccchhh-hhCcCeeEEEEcCccc-ccccccC-CcccceEEEecccccCCHHHHHHHHh--------------
Confidence 78999999976421 1122344444443221 1111110 10 010 111100000000000
Q ss_pred cccccceEEEEecccCCCCCeEeEEECCeeecCCCCchhhhcccCCCCccccCCCCCCCCCCCcceeeEEEEccCCcEEE
Q 009283 342 GLINTTHTIRLQNTAPTINGKQRYAVNSVSFIPADTPLKLADYFKIPGVFSVGSIPDNPTGGGAYLQTSVMAADFRGFAE 421 (538)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~g~~~~~iNg~~f~~p~~P~l~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~v~ 421 (538)
.... ........|||+.-.... +.. . +. + ....+++++.|++++
T Consensus 185 ----------~g~~---~~~~d~~lING~g~~~~n------------~~~----~---~~-~---~~~~~i~V~~Gk~yR 228 (596)
T PLN00044 185 ----------AGDL---LGAPDGVLINAFGPYQYN------------DSL----V---PP-G---ITYERINVDPGKTYR 228 (596)
T ss_pred ----------cCCC---CCCCCceEEcccCccccC------------Ccc----c---cC-C---CccceEEECCCCEEE
Confidence 0000 000112345554210000 000 0 00 0 012368899999999
Q ss_pred EEEEcCCCC-CCCccccCCCceEEeecCCCCCCCCCCCcCCCCCCceeeEEeCCCCEEEEEEEccCc-c--eee
Q 009283 422 VVFENPEDT-LQSWHIDGHNFFAVGMDGGEWTPASRLTYNLRDTISRCTVQVYPKSWTAVYVPLDNV-G--MWN 491 (538)
Q Consensus 422 ~~l~N~~~~-~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adnp-G--~w~ 491 (538)
|.|.|.+.. ..-|+|-||+|.|++.++. +..|..-|++.|.+|+++.+.++++.+ | .||
T Consensus 229 lRiINaa~~~~~~fsIdgH~mtVIa~DG~-----------~v~P~~vd~i~I~~GQRydVLV~a~q~~~~~Y~i 291 (596)
T PLN00044 229 FRVHNVGVATSLNFRIQGHNLLLVEAEGS-----------YTSQQNYTNLDIHVGQSYSFLLTMDQNASTDYYV 291 (596)
T ss_pred EEEEEccCCceEEEEECCCEEEEEEeCCc-----------ccCceeeeeEEEcCCceEEEEEECCCCCCCceEE
Confidence 999998865 4679999999999999752 234677899999999999999999864 5 466
No 35
>COG2132 SufI Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.93 E-value=2.2e-08 Score=106.63 Aligned_cols=229 Identities=14% Similarity=0.062 Sum_probs=144.5
Q ss_pred CeeeEEEEEcCcCcCceEEEecCCEEEEEEEeCC-CCCceeeeccccCCCCCCCCCCCC-----CCCCCCCCCeEEEEEE
Q 009283 42 GVKQQGILINGQFPGPSIEAVTNDNLIISVFNAL-DEPFLISWNGVQQRRNSWQDGVYG-----TNCPIPPGKNFTYVLQ 115 (538)
Q Consensus 42 G~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~~~N~l-~~~~siH~HG~~~~~~~~~DG~~~-----tq~~i~pG~~~~Y~f~ 115 (538)
|.......+||+. -|.+.+ +|..+++|+.|.. .....+++.|..... -..||.+. .+..+.|||+++...+
T Consensus 186 ~~~g~~~~vnG~~-~p~~~~-~~g~~rlRl~n~~~~~~~~~~~~~~~~~V-i~~DG~~v~~~~~d~~~l~p~er~~v~v~ 262 (451)
T COG2132 186 GFPGDTLLVNGAI-LPFKAV-PGGVVRLRLLNAGNARTYHLALGGGPLTV-IAVDGGPLPPVSVDELYLAPGERYEVLVD 262 (451)
T ss_pred CCCCCeEEECCCc-cceeec-CCCeEEEEEEecCCceEEEEEecCceEEE-EEeCCcCcCceeeeeEEecCcceEEEEEE
Confidence 3445566677743 355544 5555999999997 555667766655433 35677662 3466999999999999
Q ss_pred ecCCccceeeecCchhhhhcceeeEEEEecCCCCC-CCC------CCCC---CceEEEEeeecccChhhHHHHhccCCCC
Q 009283 116 VKDQIGSYFYFPSLAFHKAAGGYGGIKIASRPLIP-VPF------DPPA---GDFTILAGDWYKKNHTDLKAILDSGSDL 185 (538)
Q Consensus 116 ~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~-~~~------~~~~---~e~~l~l~d~~~~~~~~~~~~~~~~~~~ 185 (538)
.. ..|++-+.|.. .+..+-+.+..-........ ..+ ...+ ............+.......... -...
T Consensus 263 ~~-~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~ 339 (451)
T COG2132 263 MN-DGGAVTLTALG-EDMPDTLKGFRAPNPILTPSYPVLNGRVGAPTGDMADHAPVGLLVTILVEPGPNRDTDFH-LIGG 339 (451)
T ss_pred cC-CCCeEEEEecc-ccCCceeeeeeccccccccccccccccccCCCcchhhccccccchhhcCCCcccccccch-hhcc
Confidence 85 48899999886 33333333333222211000 000 0001 11111111111111000000000 0011
Q ss_pred CCCCeEEEcCCCCC--CceEEEecCCEEEEEEEecCCCceEEEEEeCCeeEEEEEcCeec---ccceecEEEEcCCCeEE
Q 009283 186 PFPDGLVINGRGSN--ANTFTVDQGKTYRFRISNVGISTSINFRIQGHKMLLVEVEGTHT---LQNTYDSLDIHLGQSYS 260 (538)
Q Consensus 186 ~~~~~~liNG~~~~--~p~~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~---~p~~~~~v~l~pgeR~d 260 (538)
.....+.+||+.++ ...+.++.|+++||+|.|-+. -.|.||+||+.|+|++.| ... .+..+|++.+.|+++..
T Consensus 340 ~~~~~~~~n~~~~~~~~~~~~~~~G~~~~~~i~n~~~-~~HP~HlHg~~F~v~~~~-~~~~~~~~~~kDTv~v~~~~~~~ 417 (451)
T COG2132 340 IGGYVWAINGKAFDDNRVTLIAKAGTRERWVLTNDTP-MPHPFHLHGHFFQVLSGD-APAPGAAPGWKDTVLVAPGERLL 417 (451)
T ss_pred cccccccccCccCCCCcCceeecCCCEEEEEEECCCC-CccCeEEcCceEEEEecC-CCcccccCccceEEEeCCCeEEE
Confidence 12356899999875 477889999999999999998 489999999999999998 222 24678999999999999
Q ss_pred EEEEeCCCCcceEEEEEee
Q 009283 261 VLVRADQPPQGYYIVISTR 279 (538)
Q Consensus 261 v~v~~~~~~g~y~i~~~~~ 279 (538)
+.++++ .+|.|.+.++..
T Consensus 418 v~~~a~-~~g~~~~HCH~l 435 (451)
T COG2132 418 VRFDAD-YPGPWMFHCHIL 435 (451)
T ss_pred EEEeCC-CCCceEEeccch
Confidence 999999 778999999874
No 36
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=98.89 E-value=2e-09 Score=95.46 Aligned_cols=89 Identities=19% Similarity=0.263 Sum_probs=72.9
Q ss_pred CceEEEecCCEEEEEEEeCCCCCceeeeccccCCCCCCCCCC-------------CC--CCCCCCCCCeEEEEEEecCCc
Q 009283 56 GPSIEAVTNDNLIISVFNALDEPFLISWNGVQQRRNSWQDGV-------------YG--TNCPIPPGKNFTYVLQVKDQI 120 (538)
Q Consensus 56 gP~i~v~~Gd~v~v~~~N~l~~~~siH~HG~~~~~~~~~DG~-------------~~--tq~~i~pG~~~~Y~f~~~~~~ 120 (538)
.+.+.++.|+.+++.+.|.....+.+|+||.........++. +. ....|.||+..+.+|.+ +.+
T Consensus 33 ~~~~~~~~g~~v~~~l~N~~~~~Hp~HlHG~~F~vl~~~~~~~~~~~~~~~~~~~~~~~DTv~v~~~~~~~i~~~~-~~~ 111 (138)
T PF07731_consen 33 TPVIEVKNGDVVEIVLQNNGSMPHPFHLHGHSFQVLGRGGGPWNPDDTQSYNPENPGWRDTVLVPPGGWVVIRFRA-DNP 111 (138)
T ss_dssp TSEEEEETTSEEEEEEEECTTSSEEEEETTSEEEEEEETTEESTTHCGGCCCSSSSSEESEEEEETTEEEEEEEEE-TST
T ss_pred cceEEEeCCCEEEEEEECCCCCccceEEEeeEEEeeecCCcccccccccccccccCcccccccccceeEEEEEEEe-ecc
Confidence 578999999999999999999999999999976422111111 11 12348999999999999 589
Q ss_pred cceeeecCchhhhhcceeeEEEEec
Q 009283 121 GSYFYFPSLAFHKAAGGYGGIKIAS 145 (538)
Q Consensus 121 Gt~wYH~H~~~q~~~Gl~G~liV~~ 145 (538)
|.|.||||...+...||.+.+.|.+
T Consensus 112 G~w~~HCHi~~H~~~GM~~~~~v~~ 136 (138)
T PF07731_consen 112 GPWLFHCHILEHEDNGMMAVFVVGP 136 (138)
T ss_dssp EEEEEEESSHHHHHTT-EEEEEECH
T ss_pred eEEEEEEchHHHHhCCCeEEEEEcC
Confidence 9999999999999999999999976
No 37
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=98.89 E-value=8.3e-08 Score=104.13 Aligned_cols=250 Identities=15% Similarity=0.169 Sum_probs=143.7
Q ss_pred CeEEEcCCCCCCceEEEecCCEEEEEEEecCCCceEEEEEeCCeeEEE-EEcCeecccceecEEEEcCCCeEEEEEEeCC
Q 009283 189 DGLVINGRGSNANTFTVDQGKTYRFRISNVGISTSINFRIQGHKMLLV-EVEGTHTLQNTYDSLDIHLGQSYSVLVRADQ 267 (538)
Q Consensus 189 ~~~liNG~~~~~p~~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~vi-a~DG~~~~p~~~~~v~l~pgeR~dv~v~~~~ 267 (538)
..+++||+.. .|.|+++.|+++++++.|........||.||....-- ..||.+- +..-.|.||+++...++++
T Consensus 21 ~~~~~Ng~~p-GP~i~~~~Gd~v~v~v~N~l~~~~t~iHwHGl~~~~~~~~DG~~~----vtq~~I~PG~s~~y~f~~~- 94 (541)
T TIGR03388 21 LVIGINGQFP-GPTIRAQAGDTIVVELTNKLHTEGVVIHWHGIRQIGTPWADGTAG----VTQCAINPGETFIYNFVVD- 94 (541)
T ss_pred eEEEECCcCC-CCeEEEEcCCEEEEEEEECCCCCCccEEecCcCCcCCcccCCCCc----cccCCcCCCCEEEEEEEcC-
Confidence 4799999974 6999999999999999998765567888888753211 2577542 3456789999999999998
Q ss_pred CCcceEEEEEeeccCCccceEEEEEecCCCCCCCCCCCCCCCccc-----cchhhhhhhhcccCCCCCCCCCCCCCCCcc
Q 009283 268 PPQGYYIVISTRFTSQVLSATSVLHYSNSAGSVSGPPPGGPTTQI-----DWSLEQARSLRRNLTASGPRPNPQGSYHYG 342 (538)
Q Consensus 268 ~~g~y~i~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~P~~~~-----~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~ 342 (538)
.+|+||++++.... ......+.|.+.+... ...+... ..+. ||...........+.. .+
T Consensus 95 ~~Gt~wyH~H~~~q-~~~Gl~G~liV~~~~~-~~~p~~~--d~e~~l~l~Dw~~~~~~~~~~~~~~-----~~------- 158 (541)
T TIGR03388 95 RPGTYFYHGHYGMQ-RSAGLYGSLIVDVPDG-EKEPFHY--DGEFNLLLSDWWHKSIHEQEVGLSS-----KP------- 158 (541)
T ss_pred CCEEEEEEecchHH-hhccceEEEEEecCCC-CCCCccc--cceEEEEeecccCCCHHHHHhhccc-----CC-------
Confidence 68999999886321 1112334444443321 0011110 0010 1111000000000000 00
Q ss_pred ccccceEEEEecccCCCCCeEeEEECCeeecC-CCCchhhhcccCCCCccccCCCCCCCCCCCcceeeEEEEccCCcEEE
Q 009283 343 LINTTHTIRLQNTAPTINGKQRYAVNSVSFIP-ADTPLKLADYFKIPGVFSVGSIPDNPTGGGAYLQTSVMAADFRGFAE 421 (538)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~g~~~~~iNg~~f~~-p~~P~l~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~v~ 421 (538)
... ........|||+.... ........ . ..+.+. . ..........++++.|++++
T Consensus 159 -------~~~------~~~~d~~liNG~g~~~~~~~~~~~~-~--~~~~~~---~-----~~~~~~~~~~~~v~~g~~~R 214 (541)
T TIGR03388 159 -------MRW------IGEPQSLLINGRGQFNCSLAAKFSS-T--NLPQCN---L-----KGNEQCAPQILHVEPGKTYR 214 (541)
T ss_pred -------CcC------CCCCcceEECCCCCCCCccccccCc-c--ccchhh---c-----cCCCCCCceEEEECCCCEEE
Confidence 000 0011234567653110 00000000 0 000000 0 00000012347889999999
Q ss_pred EEEEcCCC-CCCCccccCCCceEEeecCCCCCCCCCCCcCCCCCCceeeEEeCCCCEEEEEEEccC-cc-eeeeeec
Q 009283 422 VVFENPED-TLQSWHIDGHNFFAVGMDGGEWTPASRLTYNLRDTISRCTVQVYPKSWTAVYVPLDN-VG-MWNIRSE 495 (538)
Q Consensus 422 ~~l~N~~~-~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adn-pG-~w~~HCH 495 (538)
|.|.|.+. ..+-|+|.||+|+|++.++.. ..|..-|.+.|.+|+.+.+.++++. || .|-++--
T Consensus 215 lRliNa~~~~~~~~~id~h~~~VIa~DG~~-----------v~P~~v~~l~i~~GqR~dvlv~~~~~~~~~y~ira~ 280 (541)
T TIGR03388 215 LRIASTTALAALNFAIEGHKLTVVEADGNY-----------VEPFTVKDIDIYSGETYSVLLTTDQDPSRNYWISVG 280 (541)
T ss_pred EEEEcccccceEEEEECCCEEEEEEeCCEe-----------cccceeCeEEecCCCEEEEEEeCCCCCCCcEEEEEe
Confidence 99999875 468999999999999997642 3466779999999999999999974 54 5665543
No 38
>PLN02604 oxidoreductase
Probab=98.87 E-value=1.2e-07 Score=103.29 Aligned_cols=249 Identities=17% Similarity=0.182 Sum_probs=144.8
Q ss_pred CeEEEcCCCCCCceEEEecCCEEEEEEEecCCCceEEEEEeCCeeEE-EEEcCeecccceecEEEEcCCCeEEEEEEeCC
Q 009283 189 DGLVINGRGSNANTFTVDQGKTYRFRISNVGISTSINFRIQGHKMLL-VEVEGTHTLQNTYDSLDIHLGQSYSVLVRADQ 267 (538)
Q Consensus 189 ~~~liNG~~~~~p~~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~v-ia~DG~~~~p~~~~~v~l~pgeR~dv~v~~~~ 267 (538)
..+++||+.. .|.|+++.|++++++|.|......+.+|.||+...- ...||.+- +....|.||+++...++++
T Consensus 44 ~~~~~Ng~~p-gP~i~~~~Gd~v~v~v~N~l~~~~~~iH~HG~~~~~~~~~DG~~~----~tq~~i~pg~s~~y~f~~~- 117 (566)
T PLN02604 44 LVITINGRSP-GPTILAQQGDTVIVELKNSLLTENVAIHWHGIRQIGTPWFDGTEG----VTQCPILPGETFTYEFVVD- 117 (566)
T ss_pred eEEEECCccC-CCcEEEECCCEEEEEEEeCCCCCCCCEEeCCCCCCCCccccCCCc----cccCccCCCCeEEEEEEcC-
Confidence 4689999974 699999999999999999975557889999985321 12477432 3556889999999999997
Q ss_pred CCcceEEEEEeeccCCccceEEEEEecCCCCCCCCCCCCCCC---ccccchhhhhhhhcccCCCCCCCCCCCCCCCcccc
Q 009283 268 PPQGYYIVISTRFTSQVLSATSVLHYSNSAGSVSGPPPGGPT---TQIDWSLEQARSLRRNLTASGPRPNPQGSYHYGLI 344 (538)
Q Consensus 268 ~~g~y~i~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~P~---~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~ 344 (538)
.+|+||++++.... ......+.|.+.+.... ..+....-. .-.||...........+.. .+.
T Consensus 118 ~~Gt~wyH~H~~~q-~~~Gl~G~liV~~~~~~-~~p~~~d~d~~l~l~Dw~~~~~~~~~~~~~~---~~~---------- 182 (566)
T PLN02604 118 RPGTYLYHAHYGMQ-REAGLYGSIRVSLPRGK-SEPFSYDYDRSIILTDWYHKSTYEQALGLSS---IPF---------- 182 (566)
T ss_pred CCEEEEEeeCcHHH-HhCCCeEEEEEEecCCC-CCccccCcceEEEeeccccCCHHHHHHhhcc---CCC----------
Confidence 79999999986321 11223444444432210 011110000 0001211110000000000 000
Q ss_pred ccceEEEEecccCCCCCeEeEEECCeeecCCC---CchhhhcccCCCCccccCCCCCCCCCCCcceeeEEEEccCCcEEE
Q 009283 345 NTTHTIRLQNTAPTINGKQRYAVNSVSFIPAD---TPLKLADYFKIPGVFSVGSIPDNPTGGGAYLQTSVMAADFRGFAE 421 (538)
Q Consensus 345 ~~~~~~~~~~~~~~~~g~~~~~iNg~~f~~p~---~P~l~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~v~ 421 (538)
.. ........|||+.-..-+ .|... .+. +.. .+..+ ....++++.|++++
T Consensus 183 --------~~----~~~~d~~liNG~G~~~~~~~~~~~~~------~~~-~~~-------~~~~~-~~~~~~v~~g~~~R 235 (566)
T PLN02604 183 --------DW----VGEPQSLLIQGKGRYNCSLVSSPYLK------AGV-CNA-------TNPEC-SPYVLTVVPGKTYR 235 (566)
T ss_pred --------cc----CCCCCceEEcCCCCCCCccccCcccc------ccc-ccc-------CCCCC-CceEEEecCCCEEE
Confidence 00 000112345554211000 00000 000 000 00000 12357889999999
Q ss_pred EEEEcCCCC-CCCccccCCCceEEeecCCCCCCCCCCCcCCCCCCceeeEEeCCCCEEEEEEEccC-cc-eeeeeecc
Q 009283 422 VVFENPEDT-LQSWHIDGHNFFAVGMDGGEWTPASRLTYNLRDTISRCTVQVYPKSWTAVYVPLDN-VG-MWNIRSEN 496 (538)
Q Consensus 422 ~~l~N~~~~-~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adn-pG-~w~~HCHi 496 (538)
|.|.|.+.. ..-|+|-||+|+|++.++.. ..|..-|.+.|.+|+.+.+.++++. || .|-++...
T Consensus 236 lRlINa~~~~~~~~sidgH~~~VIa~DG~~-----------v~P~~v~~l~l~~GqRydvlV~~~~~~~~~y~ira~~ 302 (566)
T PLN02604 236 LRISSLTALSALSFQIEGHNMTVVEADGHY-----------VEPFVVKNLFIYSGETYSVLVKADQDPSRNYWVTTSV 302 (566)
T ss_pred EEEEeccccceEEEEECCCEEEEEEeCCEe-----------cccceeeeEEEccCCeEEEEEECCCCCCCCEEEEEec
Confidence 999999864 57899999999999997632 3467789999999999999999965 45 56666544
No 39
>PLN02191 L-ascorbate oxidase
Probab=98.79 E-value=2.2e-07 Score=101.11 Aligned_cols=251 Identities=13% Similarity=0.142 Sum_probs=142.3
Q ss_pred CCeEEEcCCCCCCceEEEecCCEEEEEEEecCCCceEEEEEeCCeeEE-EEEcCeecccceecEEEEcCCCeEEEEEEeC
Q 009283 188 PDGLVINGRGSNANTFTVDQGKTYRFRISNVGISTSINFRIQGHKMLL-VEVEGTHTLQNTYDSLDIHLGQSYSVLVRAD 266 (538)
Q Consensus 188 ~~~~liNG~~~~~p~~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~v-ia~DG~~~~p~~~~~v~l~pgeR~dv~v~~~ 266 (538)
...++|||+.. .|.|+++.|+++++++.|.-......+|.||....- -..||.+- +..-.|.||+.+...++++
T Consensus 42 ~~v~~vNg~~p-GP~i~~~~Gd~v~v~v~N~l~~~~tsiHwHGl~~~~~~~~DGv~g----vtq~pI~PG~s~~Y~f~~~ 116 (574)
T PLN02191 42 GAVMTVNGQFP-GPTIDAVAGDTIVVHLTNKLTTEGLVIHWHGIRQKGSPWADGAAG----VTQCAINPGETFTYKFTVE 116 (574)
T ss_pred eeEEEECCcCC-CCeEEEEcCCEEEEEEEECCCCCCccEECCCCCCCCCccccCCCc----cccCCcCCCCeEEEEEECC
Confidence 35799999974 699999999999999999866446777888775321 12577653 3445799999999999998
Q ss_pred CCCcceEEEEEeeccCCccceEEEEEecCCCCCCCCCCCCCCCccc-----cchhhhhhhhcccCCCCCCCCCCCCCCCc
Q 009283 267 QPPQGYYIVISTRFTSQVLSATSVLHYSNSAGSVSGPPPGGPTTQI-----DWSLEQARSLRRNLTASGPRPNPQGSYHY 341 (538)
Q Consensus 267 ~~~g~y~i~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~P~~~~-----~~~~~~~~~~~~~l~~~~~~~~p~~~~~~ 341 (538)
.+|+||++.+..... .....+.|.+.+...+. .+.....+. ||...........+... +.
T Consensus 117 -~~GT~wYHsH~~~q~-~~Gl~G~liV~~~~~~~---~~~~~d~e~~l~l~Dw~~~~~~~~~~~~~~~---~~------- 181 (574)
T PLN02191 117 -KPGTHFYHGHYGMQR-SAGLYGSLIVDVAKGPK---ERLRYDGEFNLLLSDWWHESIPSQELGLSSK---PM------- 181 (574)
T ss_pred -CCeEEEEeeCcHHHH-hCCCEEEEEEccCCCCC---CCCCCCeeEEEeeeccccCChHHHHHhhccC---CC-------
Confidence 689999999864211 12234444443322110 011000110 11110000000000000 00
Q ss_pred cccccceEEEEecccCCCCCeEeEEECCeeecCCCCchhhhcccCCCCccccCCCCCCCCCCCcceeeEEEEccCCcEEE
Q 009283 342 GLINTTHTIRLQNTAPTINGKQRYAVNSVSFIPADTPLKLADYFKIPGVFSVGSIPDNPTGGGAYLQTSVMAADFRGFAE 421 (538)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~g~~~~~iNg~~f~~p~~P~l~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~v~ 421 (538)
. .........|||+.-............ ..+..|. ... ++.+ ...+++++.|++++
T Consensus 182 -----------~----~~~~~d~~liNG~g~~~~~~~~~~~~~--~~~~~~~-----~~~-n~~~-~p~~~~v~~G~~yR 237 (574)
T PLN02191 182 -----------R----WIGEAQSILINGRGQFNCSLAAQFSNG--TELPMCT-----FKE-GDQC-APQTLRVEPNKTYR 237 (574)
T ss_pred -----------C----cCCCCCceEECCCCCCCCcccccccCC--cccccce-----ecc-CCCC-CceEEEEcCCCEEE
Confidence 0 000112245666431100000000000 0000000 000 0101 12358899999999
Q ss_pred EEEEcCCCC-CCCccccCCCceEEeecCCCCCCCCCCCcCCCCCCceeeEEeCCCCEEEEEEEccC-cc-eeeee
Q 009283 422 VVFENPEDT-LQSWHIDGHNFFAVGMDGGEWTPASRLTYNLRDTISRCTVQVYPKSWTAVYVPLDN-VG-MWNIR 493 (538)
Q Consensus 422 ~~l~N~~~~-~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adn-pG-~w~~H 493 (538)
|.|.|.+.. .+-|+|.||+|.|++.++. +..|...|.+.|.+|+...+.++++. +| .|-++
T Consensus 238 lRiINa~~~~~~~~~idgH~~tVIa~DG~-----------~v~P~~v~~l~i~~GqRydVlV~a~~~~~~~y~ir 301 (574)
T PLN02191 238 IRLASTTALASLNLAVQGHKLVVVEADGN-----------YITPFTTDDIDIYSGESYSVLLTTDQDPSQNYYIS 301 (574)
T ss_pred EEEEecCCceeEEEEECCCeEEEEEcCCe-----------eccceEeeeEEEcCCCeEEEEEECCCCCCCCEEEE
Confidence 999998754 5889999999999999753 23467789999999999999999975 44 44444
No 40
>PRK02710 plastocyanin; Provisional
Probab=98.73 E-value=2.2e-07 Score=79.89 Aligned_cols=74 Identities=19% Similarity=0.376 Sum_probs=55.6
Q ss_pred CceEEEecCCEEEEEEEeCCCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCeEEEEEEecCCccceeeecCchhhhhc
Q 009283 56 GPSIEAVTNDNLIISVFNALDEPFLISWNGVQQRRNSWQDGVYGTNCPIPPGKNFTYVLQVKDQIGSYFYFPSLAFHKAA 135 (538)
Q Consensus 56 gP~i~v~~Gd~v~v~~~N~l~~~~siH~HG~~~~~~~~~DG~~~tq~~i~pG~~~~Y~f~~~~~~Gt~wYH~H~~~q~~~ 135 (538)
-+.|++++||+| +++|....++++.+.|.. +...+...+.||++++|.|+. +|+|-|+|- .|...
T Consensus 46 P~~i~v~~Gd~V--~~~N~~~~~H~v~~~~~~--------~~~~~~~~~~pg~t~~~tF~~---~G~y~y~C~--~H~~~ 110 (119)
T PRK02710 46 PSTLTIKAGDTV--KWVNNKLAPHNAVFDGAK--------ELSHKDLAFAPGESWEETFSE---AGTYTYYCE--PHRGA 110 (119)
T ss_pred CCEEEEcCCCEE--EEEECCCCCceEEecCCc--------cccccccccCCCCEEEEEecC---CEEEEEEcC--CCccC
Confidence 378999999985 567877777777765431 111112347999999988874 899999997 66778
Q ss_pred ceeeEEEEe
Q 009283 136 GGYGGIKIA 144 (538)
Q Consensus 136 Gl~G~liV~ 144 (538)
||.|.|+|+
T Consensus 111 gM~G~I~V~ 119 (119)
T PRK02710 111 GMVGKITVE 119 (119)
T ss_pred CcEEEEEEC
Confidence 999999984
No 41
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=98.67 E-value=3.8e-08 Score=82.74 Aligned_cols=70 Identities=14% Similarity=0.224 Sum_probs=45.9
Q ss_pred ceEEEecCCEEEEEEEeCCCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCeEEEEEEecCCccceeeecCchhhhhcc
Q 009283 57 PSIEAVTNDNLIISVFNALDEPFLISWNGVQQRRNSWQDGVYGTNCPIPPGKNFTYVLQVKDQIGSYFYFPSLAFHKAAG 136 (538)
Q Consensus 57 P~i~v~~Gd~v~v~~~N~l~~~~siH~HG~~~~~~~~~DG~~~tq~~i~pG~~~~Y~f~~~~~~Gt~wYH~H~~~q~~~G 136 (538)
.+|++++|++|+|+++|.....+.+...++... ..|.||++.++.|+. +++|+|=|+|..+. .
T Consensus 35 ~~i~v~~G~~v~l~~~N~~~~~h~~~i~~~~~~------------~~l~~g~~~~~~f~~-~~~G~y~~~C~~~~---~- 97 (104)
T PF13473_consen 35 STITVKAGQPVTLTFTNNDSRPHEFVIPDLGIS------------KVLPPGETATVTFTP-LKPGEYEFYCTMHP---N- 97 (104)
T ss_dssp -EEEEETTCEEEEEEEE-SSS-EEEEEGGGTEE------------EEE-TT-EEEEEEEE--S-EEEEEB-SSS----T-
T ss_pred CEEEEcCCCeEEEEEEECCCCcEEEEECCCceE------------EEECCCCEEEEEEcC-CCCEEEEEEcCCCC---c-
Confidence 699999999999999999877766666664221 458999999999987 58999999999655 2
Q ss_pred eeeEEEE
Q 009283 137 GYGGIKI 143 (538)
Q Consensus 137 l~G~liV 143 (538)
|.|-|+|
T Consensus 98 m~G~liV 104 (104)
T PF13473_consen 98 MKGTLIV 104 (104)
T ss_dssp TB-----
T ss_pred ceecccC
Confidence 7777765
No 42
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=98.64 E-value=4.7e-08 Score=83.76 Aligned_cols=90 Identities=13% Similarity=0.025 Sum_probs=68.1
Q ss_pred EEEEccCCcEEEEEEEcCCCCCCCccccCCCceEEeecCCCCCCCCCCCcCCCCCCceeeEEeCCCCEEEEEEEccC-cc
Q 009283 410 SVMAADFRGFAEVVFENPEDTLQSWHIDGHNFFAVGMDGGEWTPASRLTYNLRDTISRCTVQVYPKSWTAVYVPLDN-VG 488 (538)
Q Consensus 410 ~~~~~~~g~~v~~~l~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adn-pG 488 (538)
+++.++.|+.|++.+.|.....+.+|.||...---...+|... . -.-.|.||+..+.+|+++. +|
T Consensus 26 PtI~v~~Gd~v~i~~~N~l~~~~siH~HG~~~~~~~~~DG~~~-------~-------~~~~i~pG~~~~Y~~~~~~~~G 91 (117)
T PF07732_consen 26 PTIRVREGDTVRITVTNNLDEPTSIHWHGLHQPPSPWMDGVPG-------V-------TQCPIAPGESFTYEFTANQQAG 91 (117)
T ss_dssp EEEEEETTEEEEEEEEEESSSGBSEEEETSBSTTGGGGSGGTT-------T-------SGSSBSTTEEEEEEEEESSCSE
T ss_pred CEEEEEcCCeeEEEEEeccccccccccceeeeeeeeecCCccc-------c-------cceeEEeecceeeeEeeecccc
Confidence 4678899999999999998888999999965421100111100 0 0123778999999999988 99
Q ss_pred eeeeeecchhhhhcceEEEEEEecC
Q 009283 489 MWNIRSENWARQYLGQQFYLRVYSS 513 (538)
Q Consensus 489 ~w~~HCHil~H~d~GMm~~~~V~~p 513 (538)
.|.||||...|...||...+.|.++
T Consensus 92 t~wYH~H~~~~~~~GL~G~~iV~~~ 116 (117)
T PF07732_consen 92 TYWYHSHVHGQQVMGLYGAIIVEPP 116 (117)
T ss_dssp EEEEEECSTTHHHTTEEEEEEEE-T
T ss_pred ceeEeeCCCchhcCcCEEEEEEcCC
Confidence 9999999998888999999998764
No 43
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.45 E-value=1.5e-05 Score=85.69 Aligned_cols=228 Identities=17% Similarity=0.225 Sum_probs=143.5
Q ss_pred CeEEEcCCCCCCceEEEecCCEEEEEEEecCCCceEEEEEeCCee-EEEEEcCeecccceecEEEEcCCCeEEEEEEeCC
Q 009283 189 DGLVINGRGSNANTFTVDQGKTYRFRISNVGISTSINFRIQGHKM-LLVEVEGTHTLQNTYDSLDIHLGQSYSVLVRADQ 267 (538)
Q Consensus 189 ~~~liNG~~~~~p~~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~-~via~DG~~~~p~~~~~v~l~pgeR~dv~v~~~~ 267 (538)
..++|||+.. .|.|.++.|+++.++++|-.. ..+.+|-+|... .--..||.+ ...=.|.|||.|...++.++
T Consensus 48 ~vi~iNG~fP-GP~I~~~~gD~ivV~v~N~~~-~~~sihWhGv~q~kn~w~DG~~-----~TqCPI~Pg~~~tY~F~v~~ 120 (563)
T KOG1263|consen 48 QVITINGQFP-GPTINAEEGDTIVVNVVNRLD-EPFSIHWHGVRQRKNPWQDGVY-----ITQCPIQPGENFTYRFTVKD 120 (563)
T ss_pred eeEeecCCCC-CCeEEEEeCCEEEEEEEeCCC-CceEEEeccccccCCccccCCc-----cccCCcCCCCeEEEEEEeCC
Confidence 4789999974 799999999999999999955 467777777543 222459944 45557899999999999998
Q ss_pred CCcceEEEEEeeccCCccceEEEEEecCCCCCCCCCCCCCCCccc-----cchhh-hhhhhcccCCCCCCCCCCCCCCCc
Q 009283 268 PPQGYYIVISTRFTSQVLSATSVLHYSNSAGSVSGPPPGGPTTQI-----DWSLE-QARSLRRNLTASGPRPNPQGSYHY 341 (538)
Q Consensus 268 ~~g~y~i~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~P~~~~-----~~~~~-~~~~~~~~l~~~~~~~~p~~~~~~ 341 (538)
..|+||..++..... .....+.|.+...... +-|.+ .|..+. +|.-+ ..+.+...+......|.
T Consensus 121 q~GT~~yh~h~~~~R-a~G~~G~liI~~~~~~-p~pf~-~pd~E~~ill~dW~~~~~~~~l~~~~~~~~~~p~------- 190 (563)
T KOG1263|consen 121 QIGTLWYHSHVSWQR-ATGVFGALIINPRPGL-PVPFP-KPDKEFTILLGDWYKNLNHKNLKNFLDRTGALPN------- 190 (563)
T ss_pred cceeEEEeecccccc-ccCceeEEEEcCCccC-CCCCC-CCCceeEEEeEeeccccCHHHHHHhhccCCCCCC-------
Confidence 889999998875321 1224444544432210 01222 121111 11110 01111111110000000
Q ss_pred cccccceEEEEecccCCCCCeEeEEECCeeecCCCCchhhhcccCCCCccccCCCCCCCCCCCcceeeEEEEccCCcEEE
Q 009283 342 GLINTTHTIRLQNTAPTINGKQRYAVNSVSFIPADTPLKLADYFKIPGVFSVGSIPDNPTGGGAYLQTSVMAADFRGFAE 421 (538)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~g~~~~~iNg~~f~~p~~P~l~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~v~ 421 (538)
......|||++. ....|...+++..|++..
T Consensus 191 -------------------~~D~~~iNg~~g-------------------------------~~~~~~~~l~v~pGktY~ 220 (563)
T KOG1263|consen 191 -------------------PSDGVLINGRSG-------------------------------FLYNCTPTLTVEPGKTYR 220 (563)
T ss_pred -------------------CCCceEECCCCC-------------------------------cccCceeEEEEcCCCEEE
Confidence 011245666541 111245678899999999
Q ss_pred EEEEcCCCC--CCCccccCCCceEEeecCCCCCCCCCCCcCCCCCCceeeEEeCCCCEEEEEEEccC-cc-eeeeeec
Q 009283 422 VVFENPEDT--LQSWHIDGHNFFAVGMDGGEWTPASRLTYNLRDTISRCTVQVYPKSWTAVYVPLDN-VG-MWNIRSE 495 (538)
Q Consensus 422 ~~l~N~~~~--~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adn-pG-~w~~HCH 495 (538)
|.|.|.+.. .+ |.+=||.+.||+.++. +..|.--|++.|-+|++..+..++|. |+ .|+-=|=
T Consensus 221 lRiiN~g~~~~l~-F~I~~H~ltvVe~Dg~-----------y~~p~~~~~l~i~~GQ~~~vLvtadq~~~~Y~i~~~~ 286 (563)
T KOG1263|consen 221 LRIINAGLNTSLN-FSIANHQLTVVEVDGA-----------YTKPFTTDSLDIHPGQTYSVLLTADQSPGDYYIAASP 286 (563)
T ss_pred EEEEccccccceE-EEECCeEEEEEEecce-----------EEeeeeeceEEEcCCcEEEEEEeCCCCCCcEEEEEEe
Confidence 999998743 34 9999999999999642 23355679999999999999999975 55 3554444
No 44
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=98.35 E-value=2e-06 Score=71.43 Aligned_cols=82 Identities=16% Similarity=0.266 Sum_probs=56.8
Q ss_pred CceEEEecCCEEEEEEEeCCCCCceeeeccccCCCCC-CCCCCCC-CCCCCCCCCeEEEEEEecCCccceeeecCchhhh
Q 009283 56 GPSIEAVTNDNLIISVFNALDEPFLISWNGVQQRRNS-WQDGVYG-TNCPIPPGKNFTYVLQVKDQIGSYFYFPSLAFHK 133 (538)
Q Consensus 56 gP~i~v~~Gd~v~v~~~N~l~~~~siH~HG~~~~~~~-~~DG~~~-tq~~i~pG~~~~Y~f~~~~~~Gt~wYH~H~~~q~ 133 (538)
...|++++||+| +++|....++++.++........ ...+... +...+.||+++++.|.. +|+|.|||. .|.
T Consensus 16 P~~i~v~~G~~V--~~~N~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~pG~t~~~tF~~---~G~y~y~C~--~H~ 88 (99)
T TIGR02656 16 PAKISIAAGDTV--EWVNNKGGPHNVVFDEDAVPAGVKELAKSLSHKDLLNSPGESYEVTFST---PGTYTFYCE--PHR 88 (99)
T ss_pred CCEEEECCCCEE--EEEECCCCCceEEECCCCCccchhhhcccccccccccCCCCEEEEEeCC---CEEEEEEcC--Ccc
Confidence 478999999986 56687667777776543211100 0001111 22347899999998873 999999998 788
Q ss_pred hcceeeEEEEe
Q 009283 134 AAGGYGGIKIA 144 (538)
Q Consensus 134 ~~Gl~G~liV~ 144 (538)
..||.|.|+|+
T Consensus 89 ~aGM~G~I~V~ 99 (99)
T TIGR02656 89 GAGMVGKITVE 99 (99)
T ss_pred ccCCEEEEEEC
Confidence 88999999984
No 45
>PF00394 Cu-oxidase: Multicopper oxidase; InterPro: IPR001117 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 1 (blue) domains. These domains are also present in proteins that have lost the ability to bind copper.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1RZP_A 2AVF_D 1NIA_A 1KCB_A 2NRD_A 1NIB_A 2BW4_A 1RZQ_C 2BWD_A 2BWI_A ....
Probab=98.19 E-value=3.8e-06 Score=76.32 Aligned_cols=92 Identities=20% Similarity=0.233 Sum_probs=77.3
Q ss_pred EEEEccCCcEEEEEEEcCCCC-CCCccccCCCceEEeecCCCCCCCCCCCcCCCCCCceeeEEeCCCCEEEEEEEccC-c
Q 009283 410 SVMAADFRGFAEVVFENPEDT-LQSWHIDGHNFFAVGMDGGEWTPASRLTYNLRDTISRCTVQVYPKSWTAVYVPLDN-V 487 (538)
Q Consensus 410 ~~~~~~~g~~v~~~l~N~~~~-~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adn-p 487 (538)
..+.++.|++++|.|.|.+.. .+.|++.||+|+||+.++.. ..|...|++.|.+|+.+.+.++++. +
T Consensus 60 ~~~~v~~g~~~rlRliNa~~~~~~~~~i~gh~~~Via~DG~~-----------v~p~~~~~l~l~~G~R~dvlv~~~~~~ 128 (159)
T PF00394_consen 60 PVIKVKPGERYRLRLINAGASTSFNFSIDGHPMTVIAADGVP-----------VEPYKVDTLVLAPGQRYDVLVTADQPP 128 (159)
T ss_dssp GEEEEETTTEEEEEEEEESSS-BEEEEETTBCEEEEEETTEE-----------EEEEEESBEEE-TTEEEEEEEEECSCS
T ss_pred ceEEEcCCcEEEEEEEeccCCeeEEEEeeccceeEeeecccc-----------ccccccceEEeeCCeEEEEEEEeCCCC
Confidence 457889999999999998865 69999999999999997532 2377889999999999999999987 9
Q ss_pred ceeeeee----cchhhhhcceEEEEEEec
Q 009283 488 GMWNIRS----ENWARQYLGQQFYLRVYS 512 (538)
Q Consensus 488 G~w~~HC----Hil~H~d~GMm~~~~V~~ 512 (538)
|.|.++| +...+...++...+.+.+
T Consensus 129 g~y~i~~~~~~~~~~~~~~~~~~aiL~Y~ 157 (159)
T PF00394_consen 129 GNYWIRASYQHDSINDPQNGNALAILRYD 157 (159)
T ss_dssp SEEEEEEEESSSSSHSHGGGTTEEEEEET
T ss_pred CeEEEEEecccCCCccCCCcEEEEEEEEC
Confidence 9999999 667778888888776653
No 46
>TIGR03094 sulfo_cyanin sulfocyanin. Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.
Probab=98.09 E-value=0.00014 Score=65.05 Aligned_cols=96 Identities=17% Similarity=0.166 Sum_probs=71.5
Q ss_pred EEEcCcCcC-ceEEEecCCEEEEEEEeCCCCCceeeeccccCCCC-------CCCCCCC----CCC------CCCCCCCe
Q 009283 48 ILINGQFPG-PSIEAVTNDNLIISVFNALDEPFLISWNGVQQRRN-------SWQDGVY----GTN------CPIPPGKN 109 (538)
Q Consensus 48 ~~~Ng~~pg-P~i~v~~Gd~v~v~~~N~l~~~~siH~HG~~~~~~-------~~~DG~~----~tq------~~i~pG~~ 109 (538)
+-|||+..| |+|.+..|=+|.|+|+|.-..++++-. -+.++ ...||.. |.+ ..|.+|++
T Consensus 75 fNfnGts~G~mtIyiPaGw~V~V~f~N~e~~pHnl~i---v~n~t~~P~~~~~s~dgkil~~vG~~~s~~~~NGi~~Gqs 151 (195)
T TIGR03094 75 FNFNGTSYGAMTIYLPAGWNVYVTFTNYESLPHNLKL---LPNSTQTPRGPIWAHTGKIINSTGATTSIYYGNGISSGHS 151 (195)
T ss_pred ccccCccCCceEEEEeCCCEEEEEEEcCCCCCccEEE---ecCCCCCCCccccccCceeEeecccccCccccccccccce
Confidence 667887665 899999999999999999766655443 11111 2346653 311 23678888
Q ss_pred EEEEEEecCCccceeeecCchhhhhcceeeEEEEecCC
Q 009283 110 FTYVLQVKDQIGSYFYFPSLAFHKAAGGYGGIKIASRP 147 (538)
Q Consensus 110 ~~Y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~ 147 (538)
..=.|+. -++|+|||-|-...|..+||+|-+||.+.-
T Consensus 152 ~sg~~~~-~~~G~YwlvCgipGHAesGMw~~lIVSs~v 188 (195)
T TIGR03094 152 RSGWWND-TSAGKYWLVCGITGHAESGMWAVVIVSSNV 188 (195)
T ss_pred eEEEecc-CCCeeEEEEcccCChhhcCcEEEEEEecCc
Confidence 6666665 489999999999999999999999998754
No 47
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=98.06 E-value=1.4e-05 Score=71.16 Aligned_cols=88 Identities=10% Similarity=-0.043 Sum_probs=58.4
Q ss_pred EEEEccCCcEEEEEEEcCCC-CCCCccccCCCceE--EeecCCCCCCCCCCCcCCCCCCceeeEEeCC---C--CEEEEE
Q 009283 410 SVMAADFRGFAEVVFENPED-TLQSWHIDGHNFFA--VGMDGGEWTPASRLTYNLRDTISRCTVQVYP---K--SWTAVY 481 (538)
Q Consensus 410 ~~~~~~~g~~v~~~l~N~~~-~~HP~HlHG~~F~V--l~~~~g~~~~~~~~~~~~~~p~~rDTv~vp~---~--g~~~ir 481 (538)
+.+.++.|++|++++.|.+. ..|.|-||.+.-.. .....|. +..-..-.+|+ + ++..+.
T Consensus 52 P~I~v~~Gd~V~v~v~N~~~~~~H~~~I~~~g~~~~~~p~mdG~-------------~~~~~~~i~p~~~~g~~~~~~~t 118 (148)
T TIGR03095 52 PTIVIPEGVTVHFTVINTDTDSGHNFDISKRGPPYPYMPGMDGL-------------GFVAGTGFLPPPKSGKFGYTDFT 118 (148)
T ss_pred CEEEEcCCCEEEEEEEeCCCCccccEEeecCCCccccccccCCC-------------CccccCcccCCCCCCccceeEEE
Confidence 34778999999999999875 56776666432111 0000000 11111222222 2 246889
Q ss_pred EEccCcceeeeeecchhhhhcceEEEEEE
Q 009283 482 VPLDNVGMWNIRSENWARQYLGQQFYLRV 510 (538)
Q Consensus 482 f~adnpG~w~~HCHil~H~d~GMm~~~~V 510 (538)
|+++.+|.|.||||+..|...||-..+.|
T Consensus 119 f~f~~aGtywyhC~~pgH~~~GM~G~iiV 147 (148)
T TIGR03095 119 YHFSTAGTYWYLCTYPGHAENGMYGKIVV 147 (148)
T ss_pred EECCCCeEEEEEcCChhHHHCCCEEEEEE
Confidence 99999999999999999999999999887
No 48
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=98.03 E-value=7.7e-06 Score=67.97 Aligned_cols=82 Identities=20% Similarity=0.308 Sum_probs=53.8
Q ss_pred CceEEEecCCEEEEEEEeCCCCCceeeeccccCCCCCCCC-CCCC-CCCCCCCCCeEEEEEEecCCccceeeecCchhhh
Q 009283 56 GPSIEAVTNDNLIISVFNALDEPFLISWNGVQQRRNSWQD-GVYG-TNCPIPPGKNFTYVLQVKDQIGSYFYFPSLAFHK 133 (538)
Q Consensus 56 gP~i~v~~Gd~v~v~~~N~l~~~~siH~HG~~~~~~~~~D-G~~~-tq~~i~pG~~~~Y~f~~~~~~Gt~wYH~H~~~q~ 133 (538)
-+.|++++||+| ++.|....++++.+=--........+ ..+. ....+.||+++++.|+ ++|+|.|+|- - |.
T Consensus 16 P~~i~V~~G~tV--~~~n~~~~~Hnv~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~tF~---~~G~y~y~C~-P-H~ 88 (99)
T PF00127_consen 16 PSEITVKAGDTV--TFVNNDSMPHNVVFVADGMPAGADSDYVPPGDSSPLLAPGETYSVTFT---KPGTYEYYCT-P-HY 88 (99)
T ss_dssp SSEEEEETTEEE--EEEEESSSSBEEEEETTSSHTTGGHCHHSTTCEEEEBSTTEEEEEEEE---SSEEEEEEET-T-TG
T ss_pred CCEEEECCCCEE--EEEECCCCCceEEEecccccccccccccCccccceecCCCCEEEEEeC---CCeEEEEEcC-C-Cc
Confidence 478999999985 56676555666554221000000000 0000 1134789999999988 5999999998 4 88
Q ss_pred hcceeeEEEEe
Q 009283 134 AAGGYGGIKIA 144 (538)
Q Consensus 134 ~~Gl~G~liV~ 144 (538)
..||.|.|+|+
T Consensus 89 ~~GM~G~i~V~ 99 (99)
T PF00127_consen 89 EAGMVGTIIVE 99 (99)
T ss_dssp GTTSEEEEEEE
T ss_pred ccCCEEEEEEC
Confidence 89999999995
No 49
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.02 E-value=2e-05 Score=84.43 Aligned_cols=98 Identities=19% Similarity=0.267 Sum_probs=68.7
Q ss_pred EEecCCCeee--EEEEEcCcCcCceEEEecCCEEEEEEEeCCC-CCceeeeccccCCCCCCCCCCCCCCCCCCCCCeEEE
Q 009283 36 GDIYPLGVKQ--QGILINGQFPGPSIEAVTNDNLIISVFNALD-EPFLISWNGVQQRRNSWQDGVYGTNCPIPPGKNFTY 112 (538)
Q Consensus 36 ~~~~~~G~~~--~~~~~Ng~~pgP~i~v~~Gd~v~v~~~N~l~-~~~siH~HG~~~~~~~~~DG~~~tq~~i~pG~~~~Y 112 (538)
..+..+|.+. .+.+..-.|--+.|+|++||.|.++++|.-. +... ||...... |+ ..-+.||++.+.
T Consensus 532 ~~v~R~G~kv~Vym~a~a~~f~p~~i~Vk~GDeVt~~lTN~d~~~DVi---HGF~Ip~~----nI---~~dv~PG~t~sv 601 (635)
T PRK02888 532 SKVIRDGNKVRVYMTSQAPAFGLREFTVKQGDEVTVIVTNLDKVEDLT---HGFAIPNY----GV---NMEVAPQATASV 601 (635)
T ss_pred cceEEeCCEEEEEEEEEecccCCceEEecCCCEEEEEEEeCCcccccc---cceeeccc----Cc---cEEEcCCceEEE
Confidence 3355677544 4455555565567999999999999999532 1222 56544221 11 134789999999
Q ss_pred EEEecCCccceeeecCc---hhhhhcceeeEEEEecC
Q 009283 113 VLQVKDQIGSYFYFPSL---AFHKAAGGYGGIKIASR 146 (538)
Q Consensus 113 ~f~~~~~~Gt~wYH~H~---~~q~~~Gl~G~liV~~~ 146 (538)
.|++ +++|+|||||.. ..| .+|.|.|+|+++
T Consensus 602 tF~a-dkPGvy~~~CtefCGa~H--~~M~G~~iVep~ 635 (635)
T PRK02888 602 TFTA-DKPGVYWYYCTWFCHALH--MEMRGRMLVEPK 635 (635)
T ss_pred EEEc-CCCEEEEEECCcccccCc--ccceEEEEEEeC
Confidence 9999 699999999984 244 389999999873
No 50
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=97.89 E-value=0.0002 Score=65.56 Aligned_cols=100 Identities=21% Similarity=0.208 Sum_probs=72.1
Q ss_pred EEEEcCcCc-CceEEEecCCEEEEEEEeCCCCCceeee--ccccC--CCCCCCCCCC----C------CCCCCCCCCeEE
Q 009283 47 GILINGQFP-GPSIEAVTNDNLIISVFNALDEPFLISW--NGVQQ--RRNSWQDGVY----G------TNCPIPPGKNFT 111 (538)
Q Consensus 47 ~~~~Ng~~p-gP~i~v~~Gd~v~v~~~N~l~~~~siH~--HG~~~--~~~~~~DG~~----~------tq~~i~pG~~~~ 111 (538)
.+-|||..- -++|.+..|-+|.|+|+|.-..++++-. -+..+ ......||.. | +...|.+|++..
T Consensus 75 ~~nfnGts~G~m~i~VPAGw~V~i~f~N~~~l~Hnl~iv~~~~~~p~~~~i~~DgkIl~~~G~s~~~~~~~GI~~G~s~~ 154 (196)
T PF06525_consen 75 PFNFNGTSNGQMTIYVPAGWNVQITFTNQESLPHNLVIVQNDTPTPNNPPISSDGKILLYVGASPGNYTSNGISSGQSAS 154 (196)
T ss_pred ceeeecccCCcEEEEEcCCCEEEEEEEcCCCCCeeEEEEeCCCCCCCccccCCCCceeeeccCCCCccccCCccCCceee
Confidence 677888754 4799999999999999998654444221 11111 1122345531 2 123589999998
Q ss_pred EEEEecCCccceeeecCchhhhhcceeeEEEEecCC
Q 009283 112 YVLQVKDQIGSYFYFPSLAFHKAAGGYGGIKIASRP 147 (538)
Q Consensus 112 Y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~ 147 (538)
-.|... ++|+|||=|-...|...||++-|+|.+.-
T Consensus 155 ~~~~~l-~aG~YwlvC~ipGHA~sGMw~~LiVs~~v 189 (196)
T PF06525_consen 155 GVYNDL-PAGYYWLVCGIPGHAESGMWGVLIVSSNV 189 (196)
T ss_pred EEEccC-CCceEEEEccCCChhhcCCEEEEEEecCc
Confidence 777653 69999999999999999999999998754
No 51
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=97.86 E-value=7.5e-05 Score=59.83 Aligned_cols=74 Identities=11% Similarity=0.125 Sum_probs=51.3
Q ss_pred CceEEEecCCEEEEEEEeCCCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCeEEEEEEecCCccceeeecCchhhhhc
Q 009283 56 GPSIEAVTNDNLIISVFNALDEPFLISWNGVQQRRNSWQDGVYGTNCPIPPGKNFTYVLQVKDQIGSYFYFPSLAFHKAA 135 (538)
Q Consensus 56 gP~i~v~~Gd~v~v~~~N~l~~~~siH~HG~~~~~~~~~DG~~~tq~~i~pG~~~~Y~f~~~~~~Gt~wYH~H~~~q~~~ 135 (538)
-+.|++++||+| +++|....++++++....... .+ .....+.||+++++.|+ ++|+|-|||-...
T Consensus 10 P~~i~v~~GdtV--t~~N~d~~~Hnv~~~~g~~~~---~~---~~~~~~~~g~~~~~tf~---~~G~y~y~C~~Hp---- 74 (83)
T TIGR02657 10 TPELHVKVGDTV--TWINREAMPHNVHFVAGVLGE---AA---LKGPMMKKEQAYSLTFT---EAGTYDYHCTPHP---- 74 (83)
T ss_pred CCEEEECCCCEE--EEEECCCCCccEEecCCCCcc---cc---ccccccCCCCEEEEECC---CCEEEEEEcCCCC----
Confidence 478999999996 568887778888765431100 11 01123678888887763 6999999997543
Q ss_pred ceeeEEEEe
Q 009283 136 GGYGGIKIA 144 (538)
Q Consensus 136 Gl~G~liV~ 144 (538)
+|.|.++|+
T Consensus 75 ~M~G~v~V~ 83 (83)
T TIGR02657 75 FMRGKVVVE 83 (83)
T ss_pred CCeEEEEEC
Confidence 499999985
No 52
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=97.76 E-value=0.00011 Score=61.09 Aligned_cols=83 Identities=16% Similarity=0.047 Sum_probs=58.6
Q ss_pred eEEEEccCCcEEEEEEEcCCCCCCCccccCCCceEEeecCCCCCCCCCCCcCCCCCCceeeEEeCCCCEEEEEEEccCcc
Q 009283 409 TSVMAADFRGFAEVVFENPEDTLQSWHIDGHNFFAVGMDGGEWTPASRLTYNLRDTISRCTVQVYPKSWTAVYVPLDNVG 488 (538)
Q Consensus 409 ~~~~~~~~g~~v~~~l~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adnpG 488 (538)
...++++.|++|+|+ |.+...|-+.++...+..-. .. .......+++.+.||+...+.|.. ||
T Consensus 16 P~~i~v~~G~~V~~~--N~~~~~H~~~~~~~~~~~~~-----~~--------~~~~~~~~~~~~~pG~t~~~tF~~--~G 78 (99)
T TIGR02656 16 PAKISIAAGDTVEWV--NNKGGPHNVVFDEDAVPAGV-----KE--------LAKSLSHKDLLNSPGESYEVTFST--PG 78 (99)
T ss_pred CCEEEECCCCEEEEE--ECCCCCceEEECCCCCccch-----hh--------hcccccccccccCCCCEEEEEeCC--CE
Confidence 345788999999887 66667788776543221110 00 000123467888999998887765 99
Q ss_pred eeeeeecchhhhhcceEEEEEE
Q 009283 489 MWNIRSENWARQYLGQQFYLRV 510 (538)
Q Consensus 489 ~w~~HCHil~H~d~GMm~~~~V 510 (538)
.|.|||- .|...||...+.|
T Consensus 79 ~y~y~C~--~H~~aGM~G~I~V 98 (99)
T TIGR02656 79 TYTFYCE--PHRGAGMVGKITV 98 (99)
T ss_pred EEEEEcC--CccccCCEEEEEE
Confidence 9999998 5999999999987
No 53
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=97.52 E-value=0.00047 Score=58.64 Aligned_cols=76 Identities=16% Similarity=0.167 Sum_probs=50.2
Q ss_pred CceEEEecCCEEEEEEEeCCCCCceeee-ccccCCCCCCCCCCCCCCCCCCCCCeEEEEEEecCCccceeeecCchhhhh
Q 009283 56 GPSIEAVTNDNLIISVFNALDEPFLISW-NGVQQRRNSWQDGVYGTNCPIPPGKNFTYVLQVKDQIGSYFYFPSLAFHKA 134 (538)
Q Consensus 56 gP~i~v~~Gd~v~v~~~N~l~~~~siH~-HG~~~~~~~~~DG~~~tq~~i~pG~~~~Y~f~~~~~~Gt~wYH~H~~~q~~ 134 (538)
...|++++||+|+....|. ++++.+ .+. .-+|... ..-.+|+++++.| +++|+|=|+|- .|..
T Consensus 14 P~~v~V~~GdTV~f~n~d~---~Hnv~~~~~~------~p~g~~~--~~s~~g~~~~~tF---~~~G~Y~Y~C~--pH~~ 77 (116)
T TIGR02375 14 PAYIRAAPGDTVTFVPTDK---GHNVETIKGM------IPEGAEA--FKSKINEEYTVTV---TEEGVYGVKCT--PHYG 77 (116)
T ss_pred CCEEEECCCCEEEEEECCC---CeeEEEccCC------CcCCccc--ccCCCCCEEEEEe---CCCEEEEEEcC--CCcc
Confidence 3789999999977766664 455443 221 0122210 1123566655555 36999999997 7788
Q ss_pred cceeeEEEEecCC
Q 009283 135 AGGYGGIKIASRP 147 (538)
Q Consensus 135 ~Gl~G~liV~~~~ 147 (538)
.||.|.|+|.++.
T Consensus 78 ~GM~G~V~Vg~~~ 90 (116)
T TIGR02375 78 MGMVALIQVGDPP 90 (116)
T ss_pred CCCEEEEEECCCC
Confidence 9999999998853
No 54
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=97.44 E-value=0.00048 Score=59.58 Aligned_cols=59 Identities=14% Similarity=0.152 Sum_probs=49.8
Q ss_pred EEEccCCcEEEEEEEcCCCCCCCccccCCCceEEeecCCCCCCCCCCCcCCCCCCceeeEEeCCCCEEEEEEEccCccee
Q 009283 411 VMAADFRGFAEVVFENPEDTLQSWHIDGHNFFAVGMDGGEWTPASRLTYNLRDTISRCTVQVYPKSWTAVYVPLDNVGMW 490 (538)
Q Consensus 411 ~~~~~~g~~v~~~l~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adnpG~w 490 (538)
.++++.|+.|+|++.|.++..|.+-++++. -...++|++..+++|.++-||.|
T Consensus 62 ~I~VkaGD~Vtl~vtN~d~~~H~f~i~~~g---------------------------is~~I~pGet~TitF~adKpG~Y 114 (135)
T TIGR03096 62 ALVVKKGTPVKVTVENKSPISEGFSIDAYG---------------------------ISEVIKAGETKTISFKADKAGAF 114 (135)
T ss_pred EEEECCCCEEEEEEEeCCCCccceEECCCC---------------------------cceEECCCCeEEEEEECCCCEEE
Confidence 477899999999999999888877766542 13457789999999999999999
Q ss_pred eeeecc
Q 009283 491 NIRSEN 496 (538)
Q Consensus 491 ~~HCHi 496 (538)
.|||-.
T Consensus 115 ~y~C~~ 120 (135)
T TIGR03096 115 TIWCQL 120 (135)
T ss_pred EEeCCC
Confidence 999988
No 55
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=97.25 E-value=0.0014 Score=56.32 Aligned_cols=75 Identities=17% Similarity=0.239 Sum_probs=53.1
Q ss_pred ceEEEecCCEEEEEEEeCCCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCeEEEEEEecCCccceeeecCchhhhhcc
Q 009283 57 PSIEAVTNDNLIISVFNALDEPFLISWNGVQQRRNSWQDGVYGTNCPIPPGKNFTYVLQVKDQIGSYFYFPSLAFHKAAG 136 (538)
Q Consensus 57 P~i~v~~Gd~v~v~~~N~l~~~~siH~HG~~~~~~~~~DG~~~tq~~i~pG~~~~Y~f~~~~~~Gt~wYH~H~~~q~~~G 136 (538)
-.|+|++||+ |+++|.....++++.-+.. . .+|.- ...-.+|+++++.|. ++|+|-|+|- .|...|
T Consensus 54 A~v~v~pGDT--Vtw~~~d~~~Hnv~~~~~~---~--~~g~~--~~~~~~~~s~~~Tfe---~~G~Y~Y~C~--PH~~~g 119 (128)
T COG3794 54 AEVTVKPGDT--VTWVNTDSVGHNVTAVGGM---D--PEGSG--TLKAGINESFTHTFE---TPGEYTYYCT--PHPGMG 119 (128)
T ss_pred cEEEECCCCE--EEEEECCCCCceEEEeCCC---C--ccccc--ccccCCCcceEEEec---ccceEEEEec--cCCCCC
Confidence 5899999999 6788887778887765542 1 12221 122344567666665 4999999985 456789
Q ss_pred eeeEEEEec
Q 009283 137 GYGGIKIAS 145 (538)
Q Consensus 137 l~G~liV~~ 145 (538)
|.|.|+|++
T Consensus 120 M~G~IvV~~ 128 (128)
T COG3794 120 MKGKIVVGE 128 (128)
T ss_pred cEEEEEeCC
Confidence 999999974
No 56
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=96.97 E-value=0.0046 Score=52.49 Aligned_cols=74 Identities=16% Similarity=0.201 Sum_probs=50.1
Q ss_pred CceEEEecCCEEEEEEEeCC-CCCceeeeccccCCCCCCCCCCCCCCCCCCCCCeEEEEEEecCCccceeeecCchhhhh
Q 009283 56 GPSIEAVTNDNLIISVFNAL-DEPFLISWNGVQQRRNSWQDGVYGTNCPIPPGKNFTYVLQVKDQIGSYFYFPSLAFHKA 134 (538)
Q Consensus 56 gP~i~v~~Gd~v~v~~~N~l-~~~~siH~HG~~~~~~~~~DG~~~tq~~i~pG~~~~Y~f~~~~~~Gt~wYH~H~~~q~~ 134 (538)
...|++++||+|. ++|+. ..++++..-+ .. ..|- ......+|++|+|.|. ++|+|-|+|- .|..
T Consensus 41 P~~ltV~~GdTVt--w~~~~d~~~HnV~s~~----~~-~f~s---~~~~~~~G~t~s~Tf~---~~G~Y~Y~C~--pH~~ 105 (115)
T TIGR03102 41 PPAIRVDPGTTVV--WEWTGEGGGHNVVSDG----DG-DLDE---SERVSEEGTTYEHTFE---EPGIYLYVCV--PHEA 105 (115)
T ss_pred CCEEEECCCCEEE--EEECCCCCCEEEEECC----CC-Cccc---cccccCCCCEEEEEec---CCcEEEEEcc--CCCC
Confidence 3689999999965 77543 3566655311 00 0110 1123578999999994 5999999997 4566
Q ss_pred cceeeEEEEe
Q 009283 135 AGGYGGIKIA 144 (538)
Q Consensus 135 ~Gl~G~liV~ 144 (538)
.||.|.|+|+
T Consensus 106 ~gM~G~I~V~ 115 (115)
T TIGR03102 106 LGMKGAVVVE 115 (115)
T ss_pred CCCEEEEEEC
Confidence 7999999984
No 57
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=96.83 E-value=0.0025 Score=53.33 Aligned_cols=63 Identities=11% Similarity=0.108 Sum_probs=43.1
Q ss_pred EEEEccCCcEEEEEEEcCCCCCCCccccCCCceEEeecCCCCCCCCCCCcCCCCCCceeeEEeCCCCEEEEEEEccCcce
Q 009283 410 SVMAADFRGFAEVVFENPEDTLQSWHIDGHNFFAVGMDGGEWTPASRLTYNLRDTISRCTVQVYPKSWTAVYVPLDNVGM 489 (538)
Q Consensus 410 ~~~~~~~g~~v~~~l~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adnpG~ 489 (538)
..++++.|+.+.+++.|.+...|-|.+-+ . + -...+++|+..++.|.++.||.
T Consensus 35 ~~i~v~~G~~v~l~~~N~~~~~h~~~i~~-------~-------------------~-~~~~l~~g~~~~~~f~~~~~G~ 87 (104)
T PF13473_consen 35 STITVKAGQPVTLTFTNNDSRPHEFVIPD-------L-------------------G-ISKVLPPGETATVTFTPLKPGE 87 (104)
T ss_dssp -EEEEETTCEEEEEEEE-SSS-EEEEEGG-------G-------------------T-EEEEE-TT-EEEEEEEE-S-EE
T ss_pred CEEEEcCCCeEEEEEEECCCCcEEEEECC-------C-------------------c-eEEEECCCCEEEEEEcCCCCEE
Confidence 35788999999999999987766555544 1 1 2377889999999999999999
Q ss_pred eeeeecchhhhh
Q 009283 490 WNIRSENWARQY 501 (538)
Q Consensus 490 w~~HCHil~H~d 501 (538)
|-|+|-+ |..
T Consensus 88 y~~~C~~--~~~ 97 (104)
T PF13473_consen 88 YEFYCTM--HPN 97 (104)
T ss_dssp EEEB-SS--S-T
T ss_pred EEEEcCC--CCc
Confidence 9999997 554
No 58
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=96.66 E-value=0.011 Score=48.90 Aligned_cols=83 Identities=10% Similarity=-0.040 Sum_probs=54.9
Q ss_pred eEEEEccCCcEEEEEEEcCCCCCCCccccCCCceEEeecCCCCCCC-CCCCcCCCCCCceeeEEeCCCCEEEEEEEccCc
Q 009283 409 TSVMAADFRGFAEVVFENPEDTLQSWHIDGHNFFAVGMDGGEWTPA-SRLTYNLRDTISRCTVQVYPKSWTAVYVPLDNV 487 (538)
Q Consensus 409 ~~~~~~~~g~~v~~~l~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~-~~~~~~~~~p~~rDTv~vp~~g~~~irf~adnp 487 (538)
...++++.|++|.|+.. +...|.+.+ .. +.+... ...... ..-.+..+.+|+...+.|. .|
T Consensus 16 P~~i~V~~G~tV~~~n~--~~~~Hnv~~-------~~---~~~~~~~~~~~~~----~~~~~~~~~~G~~~~~tF~--~~ 77 (99)
T PF00127_consen 16 PSEITVKAGDTVTFVNN--DSMPHNVVF-------VA---DGMPAGADSDYVP----PGDSSPLLAPGETYSVTFT--KP 77 (99)
T ss_dssp SSEEEEETTEEEEEEEE--SSSSBEEEE-------ET---TSSHTTGGHCHHS----TTCEEEEBSTTEEEEEEEE--SS
T ss_pred CCEEEECCCCEEEEEEC--CCCCceEEE-------ec---ccccccccccccC----ccccceecCCCCEEEEEeC--CC
Confidence 34578899999998776 445565543 22 111100 000000 1115677888998888877 89
Q ss_pred ceeeeeecchhhhhcceEEEEEEe
Q 009283 488 GMWNIRSENWARQYLGQQFYLRVY 511 (538)
Q Consensus 488 G~w~~HCHil~H~d~GMm~~~~V~ 511 (538)
|.|.|+|- - |...||-+.+.|.
T Consensus 78 G~y~y~C~-P-H~~~GM~G~i~V~ 99 (99)
T PF00127_consen 78 GTYEYYCT-P-HYEAGMVGTIIVE 99 (99)
T ss_dssp EEEEEEET-T-TGGTTSEEEEEEE
T ss_pred eEEEEEcC-C-CcccCCEEEEEEC
Confidence 99999999 4 9999999999873
No 59
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=96.20 E-value=0.039 Score=48.59 Aligned_cols=89 Identities=18% Similarity=0.197 Sum_probs=65.4
Q ss_pred cCcCceEEEecCCEEEEEEEeCCC--CCce---------eeeccccCCCCCCCCCCCCCCCCCCCCCeEEEEEEecCCcc
Q 009283 53 QFPGPSIEAVTNDNLIISVFNALD--EPFL---------ISWNGVQQRRNSWQDGVYGTNCPIPPGKNFTYVLQVKDQIG 121 (538)
Q Consensus 53 ~~pgP~i~v~~Gd~v~v~~~N~l~--~~~s---------iH~HG~~~~~~~~~DG~~~tq~~i~pG~~~~Y~f~~~~~~G 121 (538)
.+++-.+.++.|++++..+.|.-. -..+ .--|.... +.+++--.....+.||+|-+..|... ++|
T Consensus 59 ~f~p~~~~v~aG~tv~~v~~n~~el~hef~~~~~~~~~~~~~~~~~~---~Dme~d~~~~v~L~PG~s~elvv~ft-~~g 134 (158)
T COG4454 59 SFKPSSFEVKAGETVRFVLKNEGELKHEFTMDAPDKNLEHVTHMILA---DDMEHDDPNTVTLAPGKSGELVVVFT-GAG 134 (158)
T ss_pred ccCCCcccccCCcEEeeeecCcccceEEEeccCccccchhHHHhhhC---CccccCCcceeEeCCCCcEEEEEEec-CCc
Confidence 357778999999999999999843 1111 11233322 12333222335699999999999995 799
Q ss_pred ceeeecCchhhhhcceeeEEEEec
Q 009283 122 SYFYFPSLAFHKAAGGYGGIKIAS 145 (538)
Q Consensus 122 t~wYH~H~~~q~~~Gl~G~liV~~ 145 (538)
.|=.-|-...|+..||.|-|.|.+
T Consensus 135 ~ye~~C~iPGHy~AGM~g~itV~p 158 (158)
T COG4454 135 KYEFACNIPGHYEAGMVGEITVSP 158 (158)
T ss_pred cEEEEecCCCcccCCcEEEEEeCC
Confidence 999999999999999999998864
No 60
>PRK02710 plastocyanin; Provisional
Probab=96.15 E-value=0.023 Score=48.82 Aligned_cols=71 Identities=14% Similarity=0.077 Sum_probs=50.7
Q ss_pred EEEccCCcEEEEEEEcCCCCCCCccccCCCceEEeecCCCCCCCCCCCcCCCCCCceeeEEeCCCCEEEEEEEccCccee
Q 009283 411 VMAADFRGFAEVVFENPEDTLQSWHIDGHNFFAVGMDGGEWTPASRLTYNLRDTISRCTVQVYPKSWTAVYVPLDNVGMW 490 (538)
Q Consensus 411 ~~~~~~g~~v~~~l~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adnpG~w 490 (538)
.++++.|++|+|+ |.+...|.+.+.+.. .+. .+| ..+.+++...+.|.. ||.|
T Consensus 48 ~i~v~~Gd~V~~~--N~~~~~H~v~~~~~~---------~~~-------------~~~-~~~~pg~t~~~tF~~--~G~y 100 (119)
T PRK02710 48 TLTIKAGDTVKWV--NNKLAPHNAVFDGAK---------ELS-------------HKD-LAFAPGESWEETFSE--AGTY 100 (119)
T ss_pred EEEEcCCCEEEEE--ECCCCCceEEecCCc---------ccc-------------ccc-cccCCCCEEEEEecC--CEEE
Confidence 4678899998875 666678887654211 000 012 346788888877765 9999
Q ss_pred eeeecchhhhhcceEEEEEE
Q 009283 491 NIRSENWARQYLGQQFYLRV 510 (538)
Q Consensus 491 ~~HCHil~H~d~GMm~~~~V 510 (538)
.|+|= .|...||-..+.|
T Consensus 101 ~y~C~--~H~~~gM~G~I~V 118 (119)
T PRK02710 101 TYYCE--PHRGAGMVGKITV 118 (119)
T ss_pred EEEcC--CCccCCcEEEEEE
Confidence 99998 5999999999987
No 61
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=96.11 E-value=0.032 Score=47.51 Aligned_cols=77 Identities=9% Similarity=0.037 Sum_probs=49.7
Q ss_pred eEEEEccCCcEEEEEEEcCCCCCCCccccCCCceEEeecCCCCCCCCCCCcCCCCCCceeeEEeCCCCEEEEEEEccCcc
Q 009283 409 TSVMAADFRGFAEVVFENPEDTLQSWHIDGHNFFAVGMDGGEWTPASRLTYNLRDTISRCTVQVYPKSWTAVYVPLDNVG 488 (538)
Q Consensus 409 ~~~~~~~~g~~v~~~l~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adnpG 488 (538)
...++++.|++|.|+..+.+ |- +....+..... . +.+.-.+++... ++++.||
T Consensus 14 P~~v~V~~GdTV~f~n~d~~---Hn---------v~~~~~~~p~g--~-----------~~~~s~~g~~~~--~tF~~~G 66 (116)
T TIGR02375 14 PAYIRAAPGDTVTFVPTDKG---HN---------VETIKGMIPEG--A-----------EAFKSKINEEYT--VTVTEEG 66 (116)
T ss_pred CCEEEECCCCEEEEEECCCC---ee---------EEEccCCCcCC--c-----------ccccCCCCCEEE--EEeCCCE
Confidence 44578999999999998752 42 22211100000 0 011112455544 5557899
Q ss_pred eeeeeecchhhhhcceEEEEEEecCC
Q 009283 489 MWNIRSENWARQYLGQQFYLRVYSSA 514 (538)
Q Consensus 489 ~w~~HCHil~H~d~GMm~~~~V~~p~ 514 (538)
.|-|+|=. |...||-..+.|.+|.
T Consensus 67 ~Y~Y~C~p--H~~~GM~G~V~Vg~~~ 90 (116)
T TIGR02375 67 VYGVKCTP--HYGMGMVALIQVGDPP 90 (116)
T ss_pred EEEEEcCC--CccCCCEEEEEECCCC
Confidence 99999995 9999999999998763
No 62
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=95.73 E-value=0.1 Score=53.45 Aligned_cols=77 Identities=13% Similarity=0.106 Sum_probs=53.8
Q ss_pred CcCceEEEecCCEEEEEEEeCCCCCceeeeccccCCCCCCCCCCC--CCCCCCCCCCeEEEEEEecCCccceeeecCchh
Q 009283 54 FPGPSIEAVTNDNLIISVFNALDEPFLISWNGVQQRRNSWQDGVY--GTNCPIPPGKNFTYVLQVKDQIGSYFYFPSLAF 131 (538)
Q Consensus 54 ~pgP~i~v~~Gd~v~v~~~N~l~~~~siH~HG~~~~~~~~~DG~~--~tq~~i~pG~~~~Y~f~~~~~~Gt~wYH~H~~~ 131 (538)
+--..+.+..|+ +.+.|+|....++..-.- +|+. +....|.||.+..+.+++ ++|+|-|+| +.
T Consensus 41 c~p~~~tVpAG~-~~f~V~N~~~~~~Efe~~----------~~~~vv~e~EnIaPG~s~~l~~~L--~pGtY~~~C--~~ 105 (375)
T PRK10378 41 CEPMTLTVNAGK-TQFIIQNHSQKALEWEIL----------KGVMVVEERENIAPGFSQKMTANL--QPGEYDMTC--GL 105 (375)
T ss_pred cccCceeeCCCC-EEEEEEeCCCCcceEEee----------ccccccccccccCCCCceEEEEec--CCceEEeec--Cc
Confidence 434689999996 999999997665432111 1111 122469999999998877 599999999 33
Q ss_pred hhhcceeeEEEEecCC
Q 009283 132 HKAAGGYGGIKIASRP 147 (538)
Q Consensus 132 q~~~Gl~G~liV~~~~ 147 (538)
+ ..+.|.++|.++.
T Consensus 106 ~--~~~~g~l~Vtg~~ 119 (375)
T PRK10378 106 L--TNPKGKLIVKGEA 119 (375)
T ss_pred C--CCCCceEEEeCCC
Confidence 3 3358999998754
No 63
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=95.67 E-value=0.042 Score=50.54 Aligned_cols=88 Identities=23% Similarity=0.248 Sum_probs=63.7
Q ss_pred CeEEEcCCCCCCceEEEecCCEEEEEEEecCCCceEEEEEeCC-----eeEEEEEcCeecc-----cceecEEEEcCCCe
Q 009283 189 DGLVINGRGSNANTFTVDQGKTYRFRISNVGISTSINFRIQGH-----KMLLVEVEGTHTL-----QNTYDSLDIHLGQS 258 (538)
Q Consensus 189 ~~~liNG~~~~~p~~~v~~G~~~rlRliN~~~~~~~~~~l~gh-----~~~via~DG~~~~-----p~~~~~v~l~pgeR 258 (538)
+.+-+||.......|.|..|-+|.++++|.+.. .|.|-+-.- ..-.++.||..+. +.....--|.+||+
T Consensus 74 ~~~nfnGts~G~m~i~VPAGw~V~i~f~N~~~l-~Hnl~iv~~~~~~p~~~~i~~DgkIl~~~G~s~~~~~~~GI~~G~s 152 (196)
T PF06525_consen 74 NPFNFNGTSNGQMTIYVPAGWNVQITFTNQESL-PHNLVIVQNDTPTPNNPPISSDGKILLYVGASPGNYTSNGISSGQS 152 (196)
T ss_pred CceeeecccCCcEEEEEcCCCEEEEEEEcCCCC-CeeEEEEeCCCCCCCccccCCCCceeeeccCCCCccccCCccCCce
Confidence 478899988667999999999999999999865 677766421 1245677887652 11112234669999
Q ss_pred EEEEEEeCCCCcceEEEEEe
Q 009283 259 YSVLVRADQPPQGYYIVIST 278 (538)
Q Consensus 259 ~dv~v~~~~~~g~y~i~~~~ 278 (538)
+...+... ++|.|||.+.-
T Consensus 153 ~~~~~~~l-~aG~YwlvC~i 171 (196)
T PF06525_consen 153 ASGVYNDL-PAGYYWLVCGI 171 (196)
T ss_pred eeEEEccC-CCceEEEEccC
Confidence 99777544 68999999865
No 64
>PRK02888 nitrous-oxide reductase; Validated
Probab=95.64 E-value=0.041 Score=59.64 Aligned_cols=75 Identities=13% Similarity=0.143 Sum_probs=55.2
Q ss_pred EEEEccCCcEEEEEEEcCC---CCCCCccccCCCceEEeecCCCCCCCCCCCcCCCCCCceeeEEeCCCCEEEEEEEccC
Q 009283 410 SVMAADFRGFAEVVFENPE---DTLQSWHIDGHNFFAVGMDGGEWTPASRLTYNLRDTISRCTVQVYPKSWTAVYVPLDN 486 (538)
Q Consensus 410 ~~~~~~~g~~v~~~l~N~~---~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adn 486 (538)
..+.++.|+.|.+.++|.+ +..|-|-+-++.. -+.+.|+....+.|+++.
T Consensus 555 ~~i~Vk~GDeVt~~lTN~d~~~DViHGF~Ip~~nI---------------------------~~dv~PG~t~svtF~adk 607 (635)
T PRK02888 555 REFTVKQGDEVTVIVTNLDKVEDLTHGFAIPNYGV---------------------------NMEVAPQATASVTFTADK 607 (635)
T ss_pred ceEEecCCCEEEEEEEeCCcccccccceeecccCc---------------------------cEEEcCCceEEEEEEcCC
Confidence 3477899999999999974 3567666643321 134558899999999999
Q ss_pred cceeeeeecchhhh-hcceEEEEEEe
Q 009283 487 VGMWNIRSENWARQ-YLGQQFYLRVY 511 (538)
Q Consensus 487 pG~w~~HCHil~H~-d~GMm~~~~V~ 511 (538)
||.|.+||...-|. |.+|...+.|.
T Consensus 608 PGvy~~~CtefCGa~H~~M~G~~iVe 633 (635)
T PRK02888 608 PGVYWYYCTWFCHALHMEMRGRMLVE 633 (635)
T ss_pred CEEEEEECCcccccCcccceEEEEEE
Confidence 99999999874433 34777777764
No 65
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=94.54 E-value=0.16 Score=40.39 Aligned_cols=72 Identities=10% Similarity=0.027 Sum_probs=46.0
Q ss_pred EEEEccCCcEEEEEEEcCCCCCCCccccCCCceEEeecCCCCCCCCCCCcCCCCCCceeeEEeCCCCEEEEEEEccCcce
Q 009283 410 SVMAADFRGFAEVVFENPEDTLQSWHIDGHNFFAVGMDGGEWTPASRLTYNLRDTISRCTVQVYPKSWTAVYVPLDNVGM 489 (538)
Q Consensus 410 ~~~~~~~g~~v~~~l~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adnpG~ 489 (538)
..+.+..|++|.| .|.+...|-.+++...+ +..+ +.. ..+.++.... ++++.||.
T Consensus 11 ~~i~v~~GdtVt~--~N~d~~~Hnv~~~~g~~-------~~~~-------------~~~-~~~~~g~~~~--~tf~~~G~ 65 (83)
T TIGR02657 11 PELHVKVGDTVTW--INREAMPHNVHFVAGVL-------GEAA-------------LKG-PMMKKEQAYS--LTFTEAGT 65 (83)
T ss_pred CEEEECCCCEEEE--EECCCCCccEEecCCCC-------cccc-------------ccc-cccCCCCEEE--EECCCCEE
Confidence 3467889999987 47766788887653211 0000 111 1234555555 55678999
Q ss_pred eeeeecchhhhhcceEEEEEE
Q 009283 490 WNIRSENWARQYLGQQFYLRV 510 (538)
Q Consensus 490 w~~HCHil~H~d~GMm~~~~V 510 (538)
|.|||=+ |. .|-+.+.|
T Consensus 66 y~y~C~~--Hp--~M~G~v~V 82 (83)
T TIGR02657 66 YDYHCTP--HP--FMRGKVVV 82 (83)
T ss_pred EEEEcCC--CC--CCeEEEEE
Confidence 9999998 55 48887776
No 66
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=94.48 E-value=0.2 Score=43.04 Aligned_cols=74 Identities=9% Similarity=0.027 Sum_probs=49.9
Q ss_pred CceEEEecCCEEEEEEEeCCCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCeEEEEEEecCCccceeeecCc-hhhhh
Q 009283 56 GPSIEAVTNDNLIISVFNALDEPFLISWNGVQQRRNSWQDGVYGTNCPIPPGKNFTYVLQVKDQIGSYFYFPSL-AFHKA 134 (538)
Q Consensus 56 gP~i~v~~Gd~v~v~~~N~l~~~~siH~HG~~~~~~~~~DG~~~tq~~i~pG~~~~Y~f~~~~~~Gt~wYH~H~-~~q~~ 134 (538)
.+.|.+..|++|++++++. +--++....++.. +..+.||......|++ +++|+|++.|.. -..--
T Consensus 45 ~~~l~lp~g~~v~~~ltS~-DViHsf~ip~~~~------------k~d~~PG~~~~~~~~~-~~~G~y~~~C~e~CG~gH 110 (120)
T PF00116_consen 45 DNELVLPAGQPVRFHLTSE-DVIHSFWIPELGI------------KMDAIPGRTNSVTFTP-DKPGTYYGQCAEYCGAGH 110 (120)
T ss_dssp SSEEEEETTSEEEEEEEES-SS-EEEEETTCTE------------EEEEBTTCEEEEEEEE-SSSEEEEEEE-SSSSTTG
T ss_pred cceecccccceEeEEEEcC-CccccccccccCc------------ccccccccceeeeeee-ccCCcEEEcCccccCcCc
Confidence 4789999999999999995 3333333333211 2347899999999999 689999999983 12222
Q ss_pred cceeeEEEE
Q 009283 135 AGGYGGIKI 143 (538)
Q Consensus 135 ~Gl~G~liV 143 (538)
.-|.|-++|
T Consensus 111 ~~M~~~v~V 119 (120)
T PF00116_consen 111 SFMPGKVIV 119 (120)
T ss_dssp GG-EEEEEE
T ss_pred CCCeEEEEE
Confidence 347777665
No 67
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=94.39 E-value=0.32 Score=41.34 Aligned_cols=74 Identities=9% Similarity=-0.025 Sum_probs=48.7
Q ss_pred EEEEccCCcEEEEEEEcCCCCCCCccccCCCceEEeecCCCCCCCCCCCcCCCCCCceeeEEeCCCCEEEEEEEccCcce
Q 009283 410 SVMAADFRGFAEVVFENPEDTLQSWHIDGHNFFAVGMDGGEWTPASRLTYNLRDTISRCTVQVYPKSWTAVYVPLDNVGM 489 (538)
Q Consensus 410 ~~~~~~~g~~v~~~l~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adnpG~ 489 (538)
..++++.|++|.|+.++. ...|-. .+.+.+.|+. ......+++...+.| +.||.
T Consensus 42 ~~ltV~~GdTVtw~~~~d-~~~HnV---------~s~~~~~f~s--------------~~~~~~~G~t~s~Tf--~~~G~ 95 (115)
T TIGR03102 42 PAIRVDPGTTVVWEWTGE-GGGHNV---------VSDGDGDLDE--------------SERVSEEGTTYEHTF--EEPGI 95 (115)
T ss_pred CEEEECCCCEEEEEECCC-CCCEEE---------EECCCCCccc--------------cccccCCCCEEEEEe--cCCcE
Confidence 347889999999886543 234543 2222233321 111234566666666 68999
Q ss_pred eeeeecchhhhhcceEEEEEEe
Q 009283 490 WNIRSENWARQYLGQQFYLRVY 511 (538)
Q Consensus 490 w~~HCHil~H~d~GMm~~~~V~ 511 (538)
|-|+|=. |...||-..+.|.
T Consensus 96 Y~Y~C~p--H~~~gM~G~I~V~ 115 (115)
T TIGR03102 96 YLYVCVP--HEALGMKGAVVVE 115 (115)
T ss_pred EEEEccC--CCCCCCEEEEEEC
Confidence 9999996 9999999999873
No 68
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=94.30 E-value=0.12 Score=45.63 Aligned_cols=93 Identities=12% Similarity=0.048 Sum_probs=66.0
Q ss_pred EEccCCcEEEEEEEcCCCCCCCccccCCCceEEeecCCCCCCCCCCCcCCCCCCceeeEEeCCCCEEEEEEEccCcceee
Q 009283 412 MAADFRGFAEVVFENPEDTLQSWHIDGHNFFAVGMDGGEWTPASRLTYNLRDTISRCTVQVYPKSWTAVYVPLDNVGMWN 491 (538)
Q Consensus 412 ~~~~~g~~v~~~l~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adnpG~w~ 491 (538)
+.++.|++++.++.|.....|=|=+= ++....+ .+.... ...-..-.-..++.|.||....|-+.+.++|.|-
T Consensus 65 ~~v~aG~tv~~v~~n~~el~hef~~~---~~~~~~~--~~~~~~--~~~Dme~d~~~~v~L~PG~s~elvv~ft~~g~ye 137 (158)
T COG4454 65 FEVKAGETVRFVLKNEGELKHEFTMD---APDKNLE--HVTHMI--LADDMEHDDPNTVTLAPGKSGELVVVFTGAGKYE 137 (158)
T ss_pred ccccCCcEEeeeecCcccceEEEecc---Cccccch--hHHHhh--hCCccccCCcceeEeCCCCcEEEEEEecCCccEE
Confidence 56788999999999998777755443 2211111 000000 0000011235799999999999999999999999
Q ss_pred eeecchhhhhcceEEEEEEe
Q 009283 492 IRSENWARQYLGQQFYLRVY 511 (538)
Q Consensus 492 ~HCHil~H~d~GMm~~~~V~ 511 (538)
|-|-|-.|-+.||-..+.|.
T Consensus 138 ~~C~iPGHy~AGM~g~itV~ 157 (158)
T COG4454 138 FACNIPGHYEAGMVGEITVS 157 (158)
T ss_pred EEecCCCcccCCcEEEEEeC
Confidence 99999999999999999873
No 69
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=92.92 E-value=0.54 Score=40.09 Aligned_cols=86 Identities=17% Similarity=0.132 Sum_probs=54.8
Q ss_pred CceEEEec-CCEEEEEEEeCCCCCceeeeccccCCC--------------CCCCCCCCC-------CCCCCCCCCeEEEE
Q 009283 56 GPSIEAVT-NDNLIISVFNALDEPFLISWNGVQQRR--------------NSWQDGVYG-------TNCPIPPGKNFTYV 113 (538)
Q Consensus 56 gP~i~v~~-Gd~v~v~~~N~l~~~~siH~HG~~~~~--------------~~~~DG~~~-------tq~~i~pG~~~~Y~ 113 (538)
-..|.|.. |..|.|+|+|....+...=-|.+-..- -...|=+|- ...-|.|||+.+..
T Consensus 15 ~~~i~V~a~~k~vtv~l~h~G~lpk~~MgHN~Vl~k~~d~~~v~~~g~~ag~~~~Yvp~~d~~ViAhTkliggGes~svt 94 (125)
T TIGR02695 15 TKSISVPKSCKEFTVNLKHTGKLPKAVMGHNWVLAKSADMQAVATDGMSAGADNNYVKPGDARVIAHTKVIGGGEKTSVT 94 (125)
T ss_pred ccEEEEcCCCcEEEEEEecCCcCchhccCccEEEeccccHHHHHHHHHhcccccCccCCCCcceEEEccccCCCceEEEE
Confidence 36799998 488999999985433222222110000 001111221 12348999999999
Q ss_pred EEecC-Cccc-eeeecCchhhhhcceeeEEE
Q 009283 114 LQVKD-QIGS-YFYFPSLAFHKAAGGYGGIK 142 (538)
Q Consensus 114 f~~~~-~~Gt-~wYH~H~~~q~~~Gl~G~li 142 (538)
|+++. ++|+ |-|-|-...|.. .|.|.|.
T Consensus 95 F~~~~l~~g~~Y~f~CSFPGH~~-~MkG~l~ 124 (125)
T TIGR02695 95 FDVSKLSAGEDYTFFCSFPGHWA-MMRGTVK 124 (125)
T ss_pred EECCCCCCCCcceEEEcCCCcHH-hceEEEe
Confidence 99862 5886 999999887876 5988875
No 70
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=92.61 E-value=1.1 Score=42.31 Aligned_cols=78 Identities=12% Similarity=0.086 Sum_probs=56.3
Q ss_pred CceEEEecCCEEEEEEEeCCCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCeEEEEEEecCCccceeeecCc-hhhhh
Q 009283 56 GPSIEAVTNDNLIISVFNALDEPFLISWNGVQQRRNSWQDGVYGTNCPIPPGKNFTYVLQVKDQIGSYFYFPSL-AFHKA 134 (538)
Q Consensus 56 gP~i~v~~Gd~v~v~~~N~l~~~~siH~HG~~~~~~~~~DG~~~tq~~i~pG~~~~Y~f~~~~~~Gt~wYH~H~-~~q~~ 134 (538)
...|.+..|+.|++++++. .. + ||..++. ..+ +..+.||..-+..|++ +++|+|...|.. -+...
T Consensus 116 ~~~l~vp~g~~v~~~~ts~---DV-~--Hsf~ip~---~~~----k~da~PG~~~~~~~~~-~~~G~y~~~c~e~cG~~h 181 (201)
T TIGR02866 116 VNELVVPAGTPVRLQVTSK---DV-I--HSFWVPE---LGG----KIDAIPGQYNALWFNA-DEPGVYYGYCAELCGAGH 181 (201)
T ss_pred cCEEEEEcCCEEEEEEEeC---ch-h--hcccccc---cCc----eEEecCCcEEEEEEEe-CCCEEEEEEehhhCCcCc
Confidence 3589999999999999986 22 2 5664422 111 3457899999999998 689999999983 12223
Q ss_pred cceeeEEEEecCC
Q 009283 135 AGGYGGIKIASRP 147 (538)
Q Consensus 135 ~Gl~G~liV~~~~ 147 (538)
..|.+-++|.+++
T Consensus 182 ~~M~~~v~v~~~~ 194 (201)
T TIGR02866 182 SLMLFKVVVVERE 194 (201)
T ss_pred cCCeEEEEEECHH
Confidence 5699999988753
No 71
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=92.27 E-value=0.69 Score=39.92 Aligned_cols=74 Identities=8% Similarity=-0.081 Sum_probs=48.7
Q ss_pred EEEEccCCcEEEEEEEcCCCCCCCccccCCCceEEeecCCCCCCCCCCCcCCCCCCceeeEEeCCCCEEEEEEEccCcce
Q 009283 410 SVMAADFRGFAEVVFENPEDTLQSWHIDGHNFFAVGMDGGEWTPASRLTYNLRDTISRCTVQVYPKSWTAVYVPLDNVGM 489 (538)
Q Consensus 410 ~~~~~~~g~~v~~~l~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adnpG~ 489 (538)
..++++.|++|+|+-. +...|-.+.= ++.. |..-+++....+.....-|.. ||.
T Consensus 54 A~v~v~pGDTVtw~~~--d~~~Hnv~~~---------~~~~-------------~~g~~~~~~~~~~s~~~Tfe~--~G~ 107 (128)
T COG3794 54 AEVTVKPGDTVTWVNT--DSVGHNVTAV---------GGMD-------------PEGSGTLKAGINESFTHTFET--PGE 107 (128)
T ss_pred cEEEECCCCEEEEEEC--CCCCceEEEe---------CCCC-------------cccccccccCCCcceEEEecc--cce
Confidence 3467889999999854 4345654322 2211 112234444445666555554 999
Q ss_pred eeeeecchhhhhcceEEEEEEe
Q 009283 490 WNIRSENWARQYLGQQFYLRVY 511 (538)
Q Consensus 490 w~~HCHil~H~d~GMm~~~~V~ 511 (538)
|.|.|-. |.-+||-..+.|.
T Consensus 108 Y~Y~C~P--H~~~gM~G~IvV~ 127 (128)
T COG3794 108 YTYYCTP--HPGMGMKGKIVVG 127 (128)
T ss_pred EEEEecc--CCCCCcEEEEEeC
Confidence 9999999 9999999999885
No 72
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=92.20 E-value=3.1 Score=35.67 Aligned_cols=61 Identities=23% Similarity=0.368 Sum_probs=48.5
Q ss_pred CceEEEecCCEEEEEEEecCCCceEEEEEeCCeeEEEEEcCeecccceecEEEEcCCCeEEEEEEeCCCCcceEEEEEee
Q 009283 200 ANTFTVDQGKTYRFRISNVGISTSINFRIQGHKMLLVEVEGTHTLQNTYDSLDIHLGQSYSVLVRADQPPQGYYIVISTR 279 (538)
Q Consensus 200 ~p~~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~~~v~l~pgeR~dv~v~~~~~~g~y~i~~~~~ 279 (538)
...+.++.|+.++|++-+... .|.|.+.+..+. +.+-||+.-.+.++++ .+|.|.++++-.
T Consensus 45 ~~~l~lp~g~~v~~~ltS~DV--iHsf~ip~~~~k----------------~d~~PG~~~~~~~~~~-~~G~y~~~C~e~ 105 (120)
T PF00116_consen 45 DNELVLPAGQPVRFHLTSEDV--IHSFWIPELGIK----------------MDAIPGRTNSVTFTPD-KPGTYYGQCAEY 105 (120)
T ss_dssp SSEEEEETTSEEEEEEEESSS---EEEEETTCTEE----------------EEEBTTCEEEEEEEES-SSEEEEEEE-SS
T ss_pred cceecccccceEeEEEEcCCc--cccccccccCcc----------------cccccccceeeeeeec-cCCcEEEcCccc
Confidence 578999999999999998555 688888876544 3456888889999998 899999998754
No 73
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=90.16 E-value=1.1 Score=42.24 Aligned_cols=77 Identities=10% Similarity=0.152 Sum_probs=56.3
Q ss_pred EEEEccCCcEEEEEEEcCCCCCCCccccCCCceEEeecCCCCCCCCCCCcCCCCCCceeeEEeCCCCEEEEEEEccCcce
Q 009283 410 SVMAADFRGFAEVVFENPEDTLQSWHIDGHNFFAVGMDGGEWTPASRLTYNLRDTISRCTVQVYPKSWTAVYVPLDNVGM 489 (538)
Q Consensus 410 ~~~~~~~g~~v~~~l~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adnpG~ 489 (538)
+.+.++.|+.|++.+++.+ ..| .|+|-+.+. .+| +-||....+.|+++.||.
T Consensus 117 ~~l~vp~g~~v~~~~ts~D-V~H-------sf~ip~~~~-----------------k~d---a~PG~~~~~~~~~~~~G~ 168 (201)
T TIGR02866 117 NELVVPAGTPVRLQVTSKD-VIH-------SFWVPELGG-----------------KID---AIPGQYNALWFNADEPGV 168 (201)
T ss_pred CEEEEEcCCEEEEEEEeCc-hhh-------cccccccCc-----------------eEE---ecCCcEEEEEEEeCCCEE
Confidence 3467899999999999876 334 444433221 123 447888999999999999
Q ss_pred eeeeecchhhh-hcceEEEEEEecCC
Q 009283 490 WNIRSENWARQ-YLGQQFYLRVYSSA 514 (538)
Q Consensus 490 w~~HCHil~H~-d~GMm~~~~V~~p~ 514 (538)
|...|--.-.. |..|...++|++++
T Consensus 169 y~~~c~e~cG~~h~~M~~~v~v~~~~ 194 (201)
T TIGR02866 169 YYGYCAELCGAGHSLMLFKVVVVERE 194 (201)
T ss_pred EEEEehhhCCcCccCCeEEEEEECHH
Confidence 99999984433 57888888888764
No 74
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=87.91 E-value=5.1 Score=31.78 Aligned_cols=66 Identities=14% Similarity=0.302 Sum_probs=40.3
Q ss_pred EEEEEEEecCCCceEEEEEe-CC--eeEEEEEcCeeccc--------ceecEEEEcCCCeEEEEEEeCCC---CcceEEE
Q 009283 210 TYRFRISNVGISTSINFRIQ-GH--KMLLVEVEGTHTLQ--------NTYDSLDIHLGQSYSVLVRADQP---PQGYYIV 275 (538)
Q Consensus 210 ~~rlRliN~~~~~~~~~~l~-gh--~~~via~DG~~~~p--------~~~~~v~l~pgeR~dv~v~~~~~---~g~y~i~ 275 (538)
...|++.|.+.. ...|.+. |+ .|.|...+|..+-. .......|.|||...+-.+.+.. +|.|.+.
T Consensus 3 ~~~l~v~N~s~~-~v~l~f~sgq~~D~~v~d~~g~~vwrwS~~~~FtQal~~~~l~pGe~~~~~~~~~~~~~~~G~Y~~~ 81 (82)
T PF12690_consen 3 EFTLTVTNNSDE-PVTLQFPSGQRYDFVVKDKEGKEVWRWSDGKMFTQALQEETLEPGESLTYEETWDLKDLSPGEYTLE 81 (82)
T ss_dssp EEEEEEEE-SSS--EEEEESSS--EEEEEE-TT--EEEETTTT-------EEEEE-TT-EEEEEEEESS----SEEEEEE
T ss_pred EEEEEEEeCCCC-eEEEEeCCCCEEEEEEECCCCCEEEEecCCchhhheeeEEEECCCCEEEEEEEECCCCCCCceEEEe
Confidence 357889999886 6777764 45 45555667877621 23568999999999999988863 7999876
Q ss_pred E
Q 009283 276 I 276 (538)
Q Consensus 276 ~ 276 (538)
+
T Consensus 82 a 82 (82)
T PF12690_consen 82 A 82 (82)
T ss_dssp E
T ss_pred C
Confidence 4
No 75
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=85.42 E-value=4.3 Score=39.44 Aligned_cols=77 Identities=10% Similarity=-0.042 Sum_probs=57.9
Q ss_pred ceEEEecCCEEEEEEEeCCCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCeEEEEEEecCCccceeeecCc-hhhhhc
Q 009283 57 PSIEAVTNDNLIISVFNALDEPFLISWNGVQQRRNSWQDGVYGTNCPIPPGKNFTYVLQVKDQIGSYFYFPSL-AFHKAA 135 (538)
Q Consensus 57 P~i~v~~Gd~v~v~~~N~l~~~~siH~HG~~~~~~~~~DG~~~tq~~i~pG~~~~Y~f~~~~~~Gt~wYH~H~-~~q~~~ 135 (538)
..|.+..|.+|++.++=. +--++....++. .+...-||...++.+++ +++|+|.-+|+. -+..-.
T Consensus 137 n~l~lPv~~~V~f~ltS~-DViHsF~IP~l~------------~k~d~iPG~~~~~~~~~-~~~G~Y~g~Cae~CG~gH~ 202 (247)
T COG1622 137 NELVLPVGRPVRFKLTSA-DVIHSFWIPQLG------------GKIDAIPGMTTELWLTA-NKPGTYRGICAEYCGPGHS 202 (247)
T ss_pred ceEEEeCCCeEEEEEEec-hhceeEEecCCC------------ceeeecCCceEEEEEec-CCCeEEEEEcHhhcCCCcc
Confidence 899999999999999876 333333333331 12447889999999998 699999999993 344556
Q ss_pred ceeeEEEEecCC
Q 009283 136 GGYGGIKIASRP 147 (538)
Q Consensus 136 Gl~G~liV~~~~ 147 (538)
.|.|.++|.+++
T Consensus 203 ~M~~~v~vvs~~ 214 (247)
T COG1622 203 FMRFKVIVVSQE 214 (247)
T ss_pred cceEEEEEEcHH
Confidence 799999999865
No 76
>TIGR03079 CH4_NH3mon_ox_B methane monooxygenase/ammonia monooxygenase, subunit B. Both ammonia oxidizers such as Nitrosomonas europaea and methanotrophs (obligate methane oxidizers) such as Methylococcus capsulatus each can grow only on their own characteristic substrate. However, both groups have the ability to oxidize both substrates, and so the relevant enzymes must be named here according to their ability to oxidze both. The protein family represented here reflects subunit B of both the particulate methane monooxygenase of methylotrophs and the ammonia monooxygenase of nitrifying bacteria.
Probab=83.34 E-value=13 Score=37.70 Aligned_cols=60 Identities=20% Similarity=0.386 Sum_probs=36.9
Q ss_pred cCcCceEEEecCCEEEEEEEeCCCCCc--------eeeeccc-cCC--CCCCC-----CCCCC-CCCCCCCCCeEEEEEE
Q 009283 53 QFPGPSIEAVTNDNLIISVFNALDEPF--------LISWNGV-QQR--RNSWQ-----DGVYG-TNCPIPPGKNFTYVLQ 115 (538)
Q Consensus 53 ~~pgP~i~v~~Gd~v~v~~~N~l~~~~--------siH~HG~-~~~--~~~~~-----DG~~~-tq~~i~pG~~~~Y~f~ 115 (538)
.+||-++++ .+.++|+.+++. +++|=.- .+. .+.+- +|... .+.||.|||+.+.+.+
T Consensus 278 ~VPGR~l~~------~~~VTN~g~~~vrlgEF~TA~vRFlN~~~v~~~~~~yP~~lla~GL~v~d~~pI~PGETr~v~v~ 351 (399)
T TIGR03079 278 DVPGRALRV------TMEITNNGDQVISIGEFTTAGIRFMNANGVRVLDPDYPRELLAEGLEVDDQSAIAPGETVEVKME 351 (399)
T ss_pred ecCCcEEEE------EEEEEcCCCCceEEEeEeecceEeeCcccccccCCCChHHHhhccceeCCCCCcCCCcceEEEEE
Confidence 478877764 577888876433 3444333 121 11122 25554 4578999999999999
Q ss_pred ecC
Q 009283 116 VKD 118 (538)
Q Consensus 116 ~~~ 118 (538)
+.|
T Consensus 352 aqd 354 (399)
T TIGR03079 352 AKD 354 (399)
T ss_pred Eeh
Confidence 853
No 77
>COG4263 NosZ Nitrous oxide reductase [Energy production and conversion]
Probab=82.66 E-value=1.8 Score=44.82 Aligned_cols=78 Identities=15% Similarity=0.181 Sum_probs=51.5
Q ss_pred ceEEEecCCEEEEEEEeCCCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCeEEEEEEecCCccceeeecCch-hhhhc
Q 009283 57 PSIEAVTNDNLIISVFNALDEPFLISWNGVQQRRNSWQDGVYGTNCPIPPGKNFTYVLQVKDQIGSYFYFPSLA-FHKAA 135 (538)
Q Consensus 57 P~i~v~~Gd~v~v~~~N~l~~~~siH~HG~~~~~~~~~DG~~~tq~~i~pG~~~~Y~f~~~~~~Gt~wYH~H~~-~q~~~ 135 (538)
-+..|++||.|.+.++|--.-.-.+ ||.-.. .-|+. ..+.|-++-.|.|.+ +.+|.+||.|-.. .-+..
T Consensus 558 ~ef~Vkq~DEVt~l~tnld~Ved~t--hgfv~p----~~~v~---~~v~pq~tasvtf~a-~kpgv~w~ycs~fchalh~ 627 (637)
T COG4263 558 TEFKVKQGDEVTVLTTNLDEVEDLT--HGFVIP----NYGVN---MEVKPQRTASVTFYA-DKPGVAWYYCSWFCHALHM 627 (637)
T ss_pred EEEEEecCcEEEEEecccceecccc--ceeeec----cCceE---EEEccCCceEEEEEc-cCCeeeehhhhhHHHHHHH
Confidence 3678888888888888865433333 343211 11221 447888999999999 5899999998632 22333
Q ss_pred ceeeEEEEe
Q 009283 136 GGYGGIKIA 144 (538)
Q Consensus 136 Gl~G~liV~ 144 (538)
-|+|-++|+
T Consensus 628 em~~rmlve 636 (637)
T COG4263 628 EMAGRMLVE 636 (637)
T ss_pred hhccceeec
Confidence 478888886
No 78
>TIGR03094 sulfo_cyanin sulfocyanin. Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.
Probab=81.61 E-value=18 Score=33.09 Aligned_cols=95 Identities=12% Similarity=-0.102 Sum_probs=57.5
Q ss_pred EEEccCCcEEEEEEEcCCCCCCCccccCCCceEEeecCCCCCCC----CCCCcCC--CCCCceeeEEeCCCCEEEEEEEc
Q 009283 411 VMAADFRGFAEVVFENPEDTLQSWHIDGHNFFAVGMDGGEWTPA----SRLTYNL--RDTISRCTVQVYPKSWTAVYVPL 484 (538)
Q Consensus 411 ~~~~~~g~~v~~~l~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~----~~~~~~~--~~p~~rDTv~vp~~g~~~irf~a 484 (538)
.+-++.|-.|.++|.|.+...| .+-|+..+....+.. +.+-.+. ..+.--..=-+.+|......|..
T Consensus 86 tIyiPaGw~V~V~f~N~e~~pH-------nl~iv~n~t~~P~~~~~s~dgkil~~vG~~~s~~~~NGi~~Gqs~sg~~~~ 158 (195)
T TIGR03094 86 TIYLPAGWNVYVTFTNYESLPH-------NLKLLPNSTQTPRGPIWAHTGKIINSTGATTSIYYGNGISSGHSRSGWWND 158 (195)
T ss_pred EEEEeCCCEEEEEEEcCCCCCc-------cEEEecCCCCCCCccccccCceeEeecccccCccccccccccceeEEEecc
Confidence 3667899999999999987765 445555432111000 0000000 00000011112245565666666
Q ss_pred cCcceeeeeecchhhhhcceEEEEEEec
Q 009283 485 DNVGMWNIRSENWARQYLGQQFYLRVYS 512 (538)
Q Consensus 485 dnpG~w~~HCHil~H~d~GMm~~~~V~~ 512 (538)
--||.|.+=|=+.-|...||-..+.|-+
T Consensus 159 ~~~G~YwlvCgipGHAesGMw~~lIVSs 186 (195)
T TIGR03094 159 TSAGKYWLVCGITGHAESGMWAVVIVSS 186 (195)
T ss_pred CCCeeEEEEcccCChhhcCcEEEEEEec
Confidence 6899999999999999999999888743
No 79
>KOG4063 consensus Major epididymal secretory protein HE1 [Function unknown]
Probab=79.34 E-value=10 Score=33.42 Aligned_cols=60 Identities=15% Similarity=0.238 Sum_probs=34.8
Q ss_pred eEEEecCCEEEEEEEeCCCCC---ceeeeccccCC------CCCCCCCCCC------CCCCCCCCCeEEEEEEec
Q 009283 58 SIEAVTNDNLIISVFNALDEP---FLISWNGVQQR------RNSWQDGVYG------TNCPIPPGKNFTYVLQVK 117 (538)
Q Consensus 58 ~i~v~~Gd~v~v~~~N~l~~~---~siH~HG~~~~------~~~~~DG~~~------tq~~i~pG~~~~Y~f~~~ 117 (538)
.=.+.+|.+..|.+.=...+. ..--.||+..- +-++.||-.- ..||+.+||.++|.+..+
T Consensus 49 pC~lkKgt~~si~I~F~~~~~~~~lkt~v~g~~lg~v~vPfpl~~~dacv~~~l~~gv~CPl~age~ytY~~slp 123 (158)
T KOG4063|consen 49 PCQLKKGTEASIQIDFAPSRDTTKLKTVVHGITLGSVPVPFPLPASDACVCGNLLHGVYCPLSAGEDYTYLNSLP 123 (158)
T ss_pred ceEEecCCeEEEEEEEeeccchhhhhheeeeeecccEeecCCCCCCcccccccccccccCcccCCCceEEEEEee
Confidence 445677777666665444322 11223443221 1223555441 359999999999999986
No 80
>TIGR01433 CyoA cytochrome o ubiquinol oxidase subunit II. This enzyme catalyzes the oxidation of ubiquinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. Subunit II is responsible for binding and oxidation of the ubiquinone substrate. This sequence is closely related to QoxA, which oxidizes quinol in gram positive bacteria but which is in complex with subunits which utilize cytochromes a in the reduction of molecular oxygen. Slightly more distantly related is subunit II of cytochrome c oxidase which uses cyt. c as the oxidant.
Probab=77.44 E-value=5.5 Score=38.19 Aligned_cols=76 Identities=13% Similarity=0.159 Sum_probs=56.1
Q ss_pred EEEccCCcEEEEEEEcCCCCCCCccccCCCceEEeecCCCCCCCCCCCcCCCCCCceeeEEeCCCCEEEEEEEccCccee
Q 009283 411 VMAADFRGFAEVVFENPEDTLQSWHIDGHNFFAVGMDGGEWTPASRLTYNLRDTISRCTVQVYPKSWTAVYVPLDNVGMW 490 (538)
Q Consensus 411 ~~~~~~g~~v~~~l~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adnpG~w 490 (538)
-+.++.|+.|++.++..+- .| +|+|-+.+. .+|.+ ||-...+.|++|.||.|
T Consensus 140 el~lP~g~pV~~~ltS~DV-iH-------SF~VP~l~~-----------------K~Dai---PG~~n~~~~~~~~~G~y 191 (226)
T TIGR01433 140 EIAFPVNTPINFKITSNSV-MN-------SFFIPQLGS-----------------QIYAM---AGMQTKLHLIANEPGVY 191 (226)
T ss_pred eEEEECCCEEEEEEEECch-hh-------hhhhhhcCC-----------------eeecC---CCceEEEEEEeCCCEEE
Confidence 3578999999999998762 24 555654432 34655 68888999999999999
Q ss_pred eeeecchhhh-hcceEEEEEEecCC
Q 009283 491 NIRSENWARQ-YLGQQFYLRVYSSA 514 (538)
Q Consensus 491 ~~HCHil~H~-d~GMm~~~~V~~p~ 514 (538)
.-.|--+--. |..|...+.|++++
T Consensus 192 ~g~CaE~CG~~Ha~M~~~V~v~~~~ 216 (226)
T TIGR01433 192 DGISANYSGPGFSGMKFKAIATDRA 216 (226)
T ss_pred EEEchhhcCcCccCCeEEEEEECHH
Confidence 9999876555 56677777777664
No 81
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=76.58 E-value=9.5 Score=38.73 Aligned_cols=70 Identities=23% Similarity=0.345 Sum_probs=35.6
Q ss_pred eeeEEEEEcCcCcCceEEEecCCEEEEEEEeCCCCCce--------eeeccccCCCC--C------CCCCCCC-CCCCCC
Q 009283 43 VKQQGILINGQFPGPSIEAVTNDNLIISVFNALDEPFL--------ISWNGVQQRRN--S------WQDGVYG-TNCPIP 105 (538)
Q Consensus 43 ~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~~~N~l~~~~s--------iH~HG~~~~~~--~------~~DG~~~-tq~~i~ 105 (538)
++.++..-+=+.||-++++ .++|+|+.+.+.. ++|-.-.+... . ..+|... ...||.
T Consensus 249 V~~~v~~A~Y~vpgR~l~~------~l~VtN~g~~pv~LgeF~tA~vrFln~~v~~~~~~~P~~l~A~~gL~vs~~~pI~ 322 (381)
T PF04744_consen 249 VKVKVTDATYRVPGRTLTM------TLTVTNNGDSPVRLGEFNTANVRFLNPDVPTDDPDYPDELLAERGLSVSDNSPIA 322 (381)
T ss_dssp EEEEEEEEEEESSSSEEEE------EEEEEEESSS-BEEEEEESSS-EEE-TTT-SS-S---TTTEETT-EEES--S-B-
T ss_pred eEEEEeccEEecCCcEEEE------EEEEEcCCCCceEeeeEEeccEEEeCcccccCCCCCchhhhccCcceeCCCCCcC
Confidence 4445544444588888864 5889999876543 34433322211 0 1112222 236899
Q ss_pred CCCeEEEEEEecC
Q 009283 106 PGKNFTYVLQVKD 118 (538)
Q Consensus 106 pG~~~~Y~f~~~~ 118 (538)
|||+.+.+.++.|
T Consensus 323 PGETrtl~V~a~d 335 (381)
T PF04744_consen 323 PGETRTLTVEAQD 335 (381)
T ss_dssp TT-EEEEEEEEE-
T ss_pred CCceEEEEEEeeh
Confidence 9999999999953
No 82
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=74.42 E-value=10 Score=36.83 Aligned_cols=78 Identities=9% Similarity=0.161 Sum_probs=54.9
Q ss_pred EEEEccCCcEEEEEEEcCCCCCCCccccCCCceEEeecCCCCCCCCCCCcCCCCCCceeeEEeCCCCEEEEEEEccCcce
Q 009283 410 SVMAADFRGFAEVVFENPEDTLQSWHIDGHNFFAVGMDGGEWTPASRLTYNLRDTISRCTVQVYPKSWTAVYVPLDNVGM 489 (538)
Q Consensus 410 ~~~~~~~g~~v~~~l~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adnpG~ 489 (538)
+.+.++.|+.|++.++..+ -.| .|+|-+-+ .-+.+-||-...+.+.++.||.
T Consensus 137 n~l~lPv~~~V~f~ltS~D-ViH-------sF~IP~l~--------------------~k~d~iPG~~~~~~~~~~~~G~ 188 (247)
T COG1622 137 NELVLPVGRPVRFKLTSAD-VIH-------SFWIPQLG--------------------GKIDAIPGMTTELWLTANKPGT 188 (247)
T ss_pred ceEEEeCCCeEEEEEEech-hce-------eEEecCCC--------------------ceeeecCCceEEEEEecCCCeE
Confidence 4477899999999999875 334 45554432 2233346788889999999999
Q ss_pred eeeeecchhhhhcceE-EEEEEecCCC
Q 009283 490 WNIRSENWARQYLGQQ-FYLRVYSSAN 515 (538)
Q Consensus 490 w~~HCHil~H~d~GMm-~~~~V~~p~~ 515 (538)
|-.+|+.+--....+| ..+.|+++++
T Consensus 189 Y~g~Cae~CG~gH~~M~~~v~vvs~~~ 215 (247)
T COG1622 189 YRGICAEYCGPGHSFMRFKVIVVSQED 215 (247)
T ss_pred EEEEcHhhcCCCcccceEEEEEEcHHH
Confidence 9999999776666555 4555555543
No 83
>MTH00140 COX2 cytochrome c oxidase subunit II; Provisional
Probab=73.01 E-value=81 Score=30.28 Aligned_cols=78 Identities=12% Similarity=-0.018 Sum_probs=52.3
Q ss_pred CceEEEecCCEEEEEEEeCCCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCeEEEEEEecCCccceeeecCc-hhhhh
Q 009283 56 GPSIEAVTNDNLIISVFNALDEPFLISWNGVQQRRNSWQDGVYGTNCPIPPGKNFTYVLQVKDQIGSYFYFPSL-AFHKA 134 (538)
Q Consensus 56 gP~i~v~~Gd~v~v~~~N~l~~~~siH~HG~~~~~~~~~DG~~~tq~~i~pG~~~~Y~f~~~~~~Gt~wYH~H~-~~q~~ 134 (538)
...|.+..|..|++.+++. . .+ |+..++. -|+ +.-.-||..-...|++ +++|+|+-.|.. -+.-.
T Consensus 139 ~n~l~lP~~~~v~~~~ts~---D-Vi--Hsf~ip~----~~~---k~d~~Pg~~~~~~~~~-~~~g~y~~~C~e~CG~~H 204 (228)
T MTH00140 139 DNRLVLPYSVDTRVLVTSA---D-VI--HSWTVPS----LGV---KVDAIPGRLNQLSFEP-KRPGVFYGQCSEICGANH 204 (228)
T ss_pred CCeEEEeeCcEEEEEEEcC---c-cc--cceeccc----cCc---eeECCCCcceeEEEEe-CCCEEEEEECccccCcCc
Confidence 4679999999999999995 2 22 4544321 111 2335688888888988 589999998873 12223
Q ss_pred cceeeEEEEecCC
Q 009283 135 AGGYGGIKIASRP 147 (538)
Q Consensus 135 ~Gl~G~liV~~~~ 147 (538)
..|.+.++|.+++
T Consensus 205 ~~M~~~v~v~~~~ 217 (228)
T MTH00140 205 SFMPIVVEAVPLE 217 (228)
T ss_pred CCCeEEEEEECHH
Confidence 4577777776643
No 84
>MTH00140 COX2 cytochrome c oxidase subunit II; Provisional
Probab=72.95 E-value=12 Score=36.07 Aligned_cols=77 Identities=4% Similarity=0.015 Sum_probs=55.4
Q ss_pred EEEEccCCcEEEEEEEcCCCCCCCccccCCCceEEeecCCCCCCCCCCCcCCCCCCceeeEEeCCCCEEEEEEEccCcce
Q 009283 410 SVMAADFRGFAEVVFENPEDTLQSWHIDGHNFFAVGMDGGEWTPASRLTYNLRDTISRCTVQVYPKSWTAVYVPLDNVGM 489 (538)
Q Consensus 410 ~~~~~~~g~~v~~~l~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adnpG~ 489 (538)
+.+.++.|+.|++.+++.+ -.| .|+|-+.+. ..| .-||....+.|.++.||.
T Consensus 140 n~l~lP~~~~v~~~~ts~D-ViH-------sf~ip~~~~-----------------k~d---~~Pg~~~~~~~~~~~~g~ 191 (228)
T MTH00140 140 NRLVLPYSVDTRVLVTSAD-VIH-------SWTVPSLGV-----------------KVD---AIPGRLNQLSFEPKRPGV 191 (228)
T ss_pred CeEEEeeCcEEEEEEEcCc-ccc-------ceeccccCc-----------------eeE---CCCCcceeEEEEeCCCEE
Confidence 4567899999999999976 334 455543321 123 336888889999999999
Q ss_pred eeeeecchhhh-hcceEEEEEEecCC
Q 009283 490 WNIRSENWARQ-YLGQQFYLRVYSSA 514 (538)
Q Consensus 490 w~~HCHil~H~-d~GMm~~~~V~~p~ 514 (538)
+...|.-+-.. |..|-..++|++++
T Consensus 192 y~~~C~e~CG~~H~~M~~~v~v~~~~ 217 (228)
T MTH00140 192 FYGQCSEICGANHSFMPIVVEAVPLE 217 (228)
T ss_pred EEEECccccCcCcCCCeEEEEEECHH
Confidence 99999987666 55666777777654
No 85
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=71.35 E-value=19 Score=27.94 Aligned_cols=67 Identities=18% Similarity=0.354 Sum_probs=31.2
Q ss_pred EecCCEE--EEEEEecCCCc--eEEEEEeCC-eeEEEEEcCeecccceecEEEEcCCCeEEEEEEeC----CCCcceEEE
Q 009283 205 VDQGKTY--RFRISNVGIST--SINFRIQGH-KMLLVEVEGTHTLQNTYDSLDIHLGQSYSVLVRAD----QPPQGYYIV 275 (538)
Q Consensus 205 v~~G~~~--rlRliN~~~~~--~~~~~l~gh-~~~via~DG~~~~p~~~~~v~l~pgeR~dv~v~~~----~~~g~y~i~ 275 (538)
|.+|+.+ ++.+-|.+... ...+++..= .+. +..+ +.... .|.|||...+.++.. ..+|+|.|.
T Consensus 1 v~~G~~~~~~~tv~N~g~~~~~~v~~~l~~P~GW~-~~~~-----~~~~~--~l~pG~s~~~~~~V~vp~~a~~G~y~v~ 72 (78)
T PF10633_consen 1 VTPGETVTVTLTVTNTGTAPLTNVSLSLSLPEGWT-VSAS-----PASVP--SLPPGESVTVTFTVTVPADAAPGTYTVT 72 (78)
T ss_dssp --TTEEEEEEEEEE--SSS-BSS-EEEEE--TTSE----E-----EEEE----B-TTSEEEEEEEEEE-TT--SEEEEEE
T ss_pred CCCCCEEEEEEEEEECCCCceeeEEEEEeCCCCcc-ccCC-----ccccc--cCCCCCEEEEEEEEECCCCCCCceEEEE
Confidence 4577755 67888988652 344444321 122 2222 22223 789998776666543 257999988
Q ss_pred EEee
Q 009283 276 ISTR 279 (538)
Q Consensus 276 ~~~~ 279 (538)
+...
T Consensus 73 ~~a~ 76 (78)
T PF10633_consen 73 VTAR 76 (78)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7643
No 86
>PF14344 DUF4397: Domain of unknown function (DUF4397)
Probab=69.20 E-value=63 Score=27.28 Aligned_cols=21 Identities=19% Similarity=0.423 Sum_probs=12.5
Q ss_pred EEEEEecCCC-ceEEEEEeCCe
Q 009283 212 RFRISNVGIS-TSINFRIQGHK 232 (538)
Q Consensus 212 rlRliN~~~~-~~~~~~l~gh~ 232 (538)
++|++|++.. ....+.++|..
T Consensus 3 ~Vr~~hasp~~~~vdv~~dg~~ 24 (122)
T PF14344_consen 3 RVRFIHASPDAPAVDVYVDGTK 24 (122)
T ss_pred EEEEEEcCCCCccEEEEECCEE
Confidence 5677777664 45555555443
No 87
>MTH00047 COX2 cytochrome c oxidase subunit II; Provisional
Probab=67.33 E-value=33 Score=32.09 Aligned_cols=77 Identities=6% Similarity=0.105 Sum_probs=55.8
Q ss_pred EEEEccCCcEEEEEEEcCCCCCCCccccCCCceEEeecCCCCCCCCCCCcCCCCCCceeeEEeCCCCEEEEEEEccCcce
Q 009283 410 SVMAADFRGFAEVVFENPEDTLQSWHIDGHNFFAVGMDGGEWTPASRLTYNLRDTISRCTVQVYPKSWTAVYVPLDNVGM 489 (538)
Q Consensus 410 ~~~~~~~g~~v~~~l~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adnpG~ 489 (538)
+.+.++.|+.+++.++..+ -.|-|.+- +.+ ..+|.+ ||....+.|.++.||.
T Consensus 116 ~~l~lp~g~~v~~~ltS~D-ViHsf~vp-------~l~-----------------~k~d~~---PG~~~~~~~~~~~~G~ 167 (194)
T MTH00047 116 KPLRLVYGVPYHLLVTSSD-VIHSFSVP-------DLN-----------------LKMDAI---PGRINHLFFCPDRHGV 167 (194)
T ss_pred ceEEEeCCCEEEeeeecCc-cccceecc-------ccC-----------------ceeecC---CCceEEEEEEcCCCEE
Confidence 3466889999999999776 44555443 222 123443 6888899999999999
Q ss_pred eeeeecchhhh-hcceEEEEEEecCC
Q 009283 490 WNIRSENWARQ-YLGQQFYLRVYSSA 514 (538)
Q Consensus 490 w~~HCHil~H~-d~GMm~~~~V~~p~ 514 (538)
+-.-|.-+--. |..|-..++|++++
T Consensus 168 y~g~C~e~CG~~H~~M~~~v~v~~~~ 193 (194)
T MTH00047 168 FVGYCSELCGVGHSYMPIVIEVVDVD 193 (194)
T ss_pred EEEEeehhhCcCcccCcEEEEEEcCC
Confidence 99999986665 56677777777764
No 88
>MTH00098 COX2 cytochrome c oxidase subunit II; Validated
Probab=66.84 E-value=18 Score=34.68 Aligned_cols=77 Identities=5% Similarity=0.013 Sum_probs=55.7
Q ss_pred EEEEccCCcEEEEEEEcCCCCCCCccccCCCceEEeecCCCCCCCCCCCcCCCCCCceeeEEeCCCCEEEEEEEccCcce
Q 009283 410 SVMAADFRGFAEVVFENPEDTLQSWHIDGHNFFAVGMDGGEWTPASRLTYNLRDTISRCTVQVYPKSWTAVYVPLDNVGM 489 (538)
Q Consensus 410 ~~~~~~~g~~v~~~l~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adnpG~ 489 (538)
+.+.++.|+.+++.++..+-. |.|+|-+.|. ..|.+ ||....+.|.++.||.
T Consensus 140 n~lvlP~~~~v~~~~tS~DVi--------Hsf~ip~lg~-----------------k~dai---PG~~~~~~~~~~~~G~ 191 (227)
T MTH00098 140 NRVVLPMEMPIRMLISSEDVL--------HSWAVPSLGL-----------------KTDAI---PGRLNQTTLMSTRPGL 191 (227)
T ss_pred ceEEecCCCEEEEEEEECccc--------cccccccccc-----------------ceecC---CCceEEEEEecCCcEE
Confidence 456789999999999987733 4566644432 23443 6888889999999999
Q ss_pred eeeeecchhhh-hcceEEEEEEecCC
Q 009283 490 WNIRSENWARQ-YLGQQFYLRVYSSA 514 (538)
Q Consensus 490 w~~HCHil~H~-d~GMm~~~~V~~p~ 514 (538)
+..-|.-+-.. |.-|-..++|++++
T Consensus 192 ~~g~Cse~CG~~H~~M~~~v~v~~~~ 217 (227)
T MTH00098 192 YYGQCSEICGSNHSFMPIVLELVPLK 217 (227)
T ss_pred EEEECccccCcCcCCceEEEEEeCHH
Confidence 99999986665 45666667766654
No 89
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=65.53 E-value=68 Score=25.55 Aligned_cols=67 Identities=18% Similarity=0.308 Sum_probs=41.7
Q ss_pred EEecCCEE--EEEEEecCCCceEEEEEeCCeeEEEEEcCeecccceecEE-EEcCCCeEEEEEEeCC-CCcceEEEEEee
Q 009283 204 TVDQGKTY--RFRISNVGISTSINFRIQGHKMLLVEVEGTHTLQNTYDSL-DIHLGQSYSVLVRADQ-PPQGYYIVISTR 279 (538)
Q Consensus 204 ~v~~G~~~--rlRliN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~~~v-~l~pgeR~dv~v~~~~-~~g~y~i~~~~~ 279 (538)
.+.+|+.+ .+.|-|.|....-.+.+. +-.||..+ ....+ .|.||+...+.+.... .+|.|.|++...
T Consensus 14 ~~~~g~~~~i~~~V~N~G~~~~~~~~v~------~~~~~~~~---~~~~i~~L~~g~~~~v~~~~~~~~~G~~~i~~~iD 84 (101)
T PF07705_consen 14 NVVPGEPVTITVTVKNNGTADAENVTVR------LYLDGNSV---STVTIPSLAPGESETVTFTWTPPSPGSYTIRVVID 84 (101)
T ss_dssp EEETTSEEEEEEEEEE-SSS-BEEEEEE------EEETTEEE---EEEEESEB-TTEEEEEEEEEE-SS-CEEEEEEEES
T ss_pred cccCCCEEEEEEEEEECCCCCCCCEEEE------EEECCcee---ccEEECCcCCCcEEEEEEEEEeCCCCeEEEEEEEe
Confidence 45677766 577899987754444443 34566654 33445 7899999988887753 678888877653
No 90
>MTH00129 COX2 cytochrome c oxidase subunit II; Provisional
Probab=65.42 E-value=17 Score=35.00 Aligned_cols=77 Identities=8% Similarity=0.007 Sum_probs=56.9
Q ss_pred EEEEccCCcEEEEEEEcCCCCCCCccccCCCceEEeecCCCCCCCCCCCcCCCCCCceeeEEeCCCCEEEEEEEccCcce
Q 009283 410 SVMAADFRGFAEVVFENPEDTLQSWHIDGHNFFAVGMDGGEWTPASRLTYNLRDTISRCTVQVYPKSWTAVYVPLDNVGM 489 (538)
Q Consensus 410 ~~~~~~~g~~v~~~l~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adnpG~ 489 (538)
+.+.++.|+.+++.++..+-. |.|+|-+.+. ..|.+ ||....+.|.++.||.
T Consensus 140 n~lvlP~~~~v~~~~tS~DVi--------Hsf~ip~~~~-----------------k~da~---PG~~~~~~~~~~~~G~ 191 (230)
T MTH00129 140 HRMVVPVESPIRVLVSAEDVL--------HSWAVPALGV-----------------KMDAV---PGRLNQTAFIASRPGV 191 (230)
T ss_pred ceEEEecCcEEEEEEEeCccc--------cceeccccCC-----------------ccccC---CCceEEEEEEeCCceE
Confidence 456789999999999988733 5677766542 23433 6888888999999999
Q ss_pred eeeeecchhhh-hcceEEEEEEecCC
Q 009283 490 WNIRSENWARQ-YLGQQFYLRVYSSA 514 (538)
Q Consensus 490 w~~HCHil~H~-d~GMm~~~~V~~p~ 514 (538)
+...|.-+-.. |..|-..++|++++
T Consensus 192 ~~g~C~e~CG~~H~~M~~~v~vv~~~ 217 (230)
T MTH00129 192 FYGQCSEICGANHSFMPIVVEAVPLE 217 (230)
T ss_pred EEEEChhhccccccCCcEEEEEECHH
Confidence 99999976555 56677777777654
No 91
>PRK05461 apaG CO2+/MG2+ efflux protein ApaG; Reviewed
Probab=65.18 E-value=8.4 Score=33.32 Aligned_cols=21 Identities=33% Similarity=0.713 Sum_probs=16.5
Q ss_pred CCCCCCCCCCCCCCCeEEEEE
Q 009283 94 QDGVYGTNCPIPPGKNFTYVL 114 (538)
Q Consensus 94 ~DG~~~tq~~i~pG~~~~Y~f 114 (538)
.+||-|.|.-|.||++|.|.=
T Consensus 66 G~GVVG~qP~L~PGe~F~Y~S 86 (127)
T PRK05461 66 GEGVVGEQPVLAPGESFEYTS 86 (127)
T ss_pred CCceecCCceECCCCCeEEeC
Confidence 567767788899999888753
No 92
>TIGR01432 QOXA cytochrome aa3 quinol oxidase, subunit II. This enzyme catalyzes the oxidation of quinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. This subunit contains two transmembrane helices and a large external domain responsible for the binding and oxidation of quinol. QuoX is (presently) only found in gram positive bacteria of the Bacillus/Staphylococcus group. Like CyoA, the ubiquinol oxidase found in proteobacteria, the residues responsible for the ligation of Cu(a) and cytochrome c (found in the related cyt. c oxidases) are absent. Unlike CyoA, QoxA is in complex with a subunit I which contains cytochromes a similar to the cyt. c oxidases (as opposed to cytochromes b).
Probab=64.94 E-value=16 Score=34.83 Aligned_cols=76 Identities=14% Similarity=0.280 Sum_probs=56.2
Q ss_pred EEccCCcEEEEEEEcCCCCCCCccccCCCceEEeecCCCCCCCCCCCcCCCCCCceeeEEeCCCCEEEEEEEccCcceee
Q 009283 412 MAADFRGFAEVVFENPEDTLQSWHIDGHNFFAVGMDGGEWTPASRLTYNLRDTISRCTVQVYPKSWTAVYVPLDNVGMWN 491 (538)
Q Consensus 412 ~~~~~g~~v~~~l~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adnpG~w~ 491 (538)
+.++.|..|++.++..+- . |+|+|=+.+. .+|.+ ||-...+.|.++.||.|-
T Consensus 132 l~iP~g~~v~~~ltS~DV-i-------Hsf~vP~l~~-----------------k~dai---PG~~~~~~~~~~~~G~y~ 183 (217)
T TIGR01432 132 LNIPKDRPVLFKLQSADT-M-------TSFWIPQLGG-----------------QKYAM---TGMTMNWYLQADQVGTYR 183 (217)
T ss_pred EEEECCCEEEEEEECCch-h-------hhhhchhhCc-----------------eeecC---CCceEEEEEEeCCCEEEE
Confidence 568899999999998862 2 3566644332 34655 688889999999999999
Q ss_pred eeecchhhh-hcceEEEEEEecCCC
Q 009283 492 IRSENWARQ-YLGQQFYLRVYSSAN 515 (538)
Q Consensus 492 ~HCHil~H~-d~GMm~~~~V~~p~~ 515 (538)
-.|=-+--. |.-|...++|+++++
T Consensus 184 g~Cae~CG~~Hs~M~~~v~v~~~~~ 208 (217)
T TIGR01432 184 GRNANFNGEGFADQTFDVNAVSEKD 208 (217)
T ss_pred EEehhhcCccccCCeEEEEEeCHHH
Confidence 999865544 556777777777653
No 93
>COG2967 ApaG Uncharacterized protein affecting Mg2+/Co2+ transport [Inorganic ion transport and metabolism]
Probab=64.43 E-value=9.2 Score=32.19 Aligned_cols=65 Identities=17% Similarity=0.297 Sum_probs=41.5
Q ss_pred EEEEeCCCCC---ceeeeccccCCC---CCCCCCCCCCCCCCCCCCeEEEEEEec--CCccceeeecCchhhhhcceeeE
Q 009283 69 ISVFNALDEP---FLISWNGVQQRR---NSWQDGVYGTNCPIPPGKNFTYVLQVK--DQIGSYFYFPSLAFHKAAGGYGG 140 (538)
Q Consensus 69 v~~~N~l~~~---~siH~HG~~~~~---~~~~DG~~~tq~~i~pG~~~~Y~f~~~--~~~Gt~wYH~H~~~q~~~Gl~G~ 140 (538)
|++.|....+ .+=|||=-+..+ .-...||-|.|.-|.||++|+|.=-++ ...|+ |.|-
T Consensus 34 itI~N~g~~~vqLlsR~W~ITd~~g~v~eV~G~GVVGeQP~l~PG~~y~YtSg~~l~Tp~G~--------------M~Gh 99 (126)
T COG2967 34 VTIRNLGEVPVQLLSRYWLITDGNGRVTEVEGEGVVGEQPLLAPGEEYQYTSGCPLDTPSGT--------------MQGH 99 (126)
T ss_pred EEEecCCCccceeeeeEEEEecCCCcEEEEEcCceeccccccCCCCceEEcCCcCccCCcce--------------EEEE
Confidence 6777776654 345887543322 113567777899999999999975543 33555 6666
Q ss_pred EEEecCC
Q 009283 141 IKIASRP 147 (538)
Q Consensus 141 liV~~~~ 147 (538)
....+..
T Consensus 100 Y~M~~e~ 106 (126)
T COG2967 100 YEMIDED 106 (126)
T ss_pred EEEecCC
Confidence 6555544
No 94
>PF04151 PPC: Bacterial pre-peptidase C-terminal domain; InterPro: IPR007280 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. This domain is normally found at the C terminus of secreted archaeal and bacterial peptidases, the majority of which belong to MEROPS peptidase families M4 (vibriolysin, IPR001570 from INTERPRO), M9A amd M9B (microbial collangenase, IPR002169 from INTERPRO), M28 (aminopeptidase Ap1, IPR007484 from INTERPRO) and S8 (subtilisin family peptidases, IPR000209 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 4DY5_B 4DXZ_A 4DY3_B 3JQW_A 3JQX_C 1NQJ_B 1NQD_A 2O8O_A 1WMF_A 1WME_A ....
Probab=63.77 E-value=31 Score=26.02 Aligned_cols=65 Identities=23% Similarity=0.267 Sum_probs=36.1
Q ss_pred ceEEEecCCEEEEEEEecCCCceEEEEEeCCeeEEEEEcCeecccceecEEEEcCCCeEEEEEEeCCCCcceEEEEE
Q 009283 201 NTFTVDQGKTYRFRISNVGISTSINFRIQGHKMLLVEVEGTHTLQNTYDSLDIHLGQSYSVLVRADQPPQGYYIVIS 277 (538)
Q Consensus 201 p~~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~~~v~l~pgeR~dv~v~~~~~~g~y~i~~~ 277 (538)
-.++++.|+++++.+-+.+.. ..+.+...+|..+....-.. -..+..-.+.+++. ++|+|+|++.
T Consensus 5 y~f~v~ag~~l~i~l~~~~~d---------~dl~l~~~~g~~~~~~d~~~--~~~~~~~~i~~~~~-~~GtYyi~V~ 69 (70)
T PF04151_consen 5 YSFTVPAGGTLTIDLSGGSGD---------ADLYLYDSNGNSLASYDDSS--QSGGNDESITFTAP-AAGTYYIRVY 69 (70)
T ss_dssp EEEEESTTEEEEEEECETTSS---------EEEEEEETTSSSCEECCCCT--CETTSEEEEEEEES-SSEEEEEEEE
T ss_pred EEEEEcCCCEEEEEEcCCCCC---------eEEEEEcCCCCchhhheecC--CCCCCccEEEEEcC-CCEEEEEEEE
Confidence 468899999888888666542 23555555554332111111 01122233344555 7899999874
No 95
>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white. A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....
Probab=63.21 E-value=17 Score=29.48 Aligned_cols=69 Identities=14% Similarity=0.143 Sum_probs=40.3
Q ss_pred EecCCEEEEEEE--ecCCCceEEEEEeCC--eeEEEEEcCeecccceecEE-EEcCCCeEEEEEEeCCC--CcceEEEEE
Q 009283 205 VDQGKTYRFRIS--NVGISTSINFRIQGH--KMLLVEVEGTHTLQNTYDSL-DIHLGQSYSVLVRADQP--PQGYYIVIS 277 (538)
Q Consensus 205 v~~G~~~rlRli--N~~~~~~~~~~l~gh--~~~via~DG~~~~p~~~~~v-~l~pgeR~dv~v~~~~~--~g~y~i~~~ 277 (538)
-+|||++.+|++ +.... .. ...+. .++|..-+|..+.. ... .......++..+.+++. .|.|.|++.
T Consensus 11 YrPGetV~~~~~~~~~~~~-~~--~~~~~~~~v~i~dp~g~~v~~---~~~~~~~~~G~~~~~~~lp~~~~~G~y~i~~~ 84 (99)
T PF01835_consen 11 YRPGETVHFRAIVRDLDND-FK--PPANSPVTVTIKDPSGNEVFR---WSVNTTNENGIFSGSFQLPDDAPLGTYTIRVK 84 (99)
T ss_dssp E-TTSEEEEEEEEEEECTT-CS--CESSEEEEEEEEETTSEEEEE---EEEEETTCTTEEEEEEE--SS---EEEEEEEE
T ss_pred cCCCCEEEEEEEEeccccc-cc--cccCCceEEEEECCCCCEEEE---EEeeeeCCCCEEEEEEECCCCCCCEeEEEEEE
Confidence 489999999998 66521 00 11222 35566666665421 222 34567788888888753 599999987
Q ss_pred ee
Q 009283 278 TR 279 (538)
Q Consensus 278 ~~ 279 (538)
..
T Consensus 85 ~~ 86 (99)
T PF01835_consen 85 TD 86 (99)
T ss_dssp ET
T ss_pred Ec
Confidence 63
No 96
>MTH00185 COX2 cytochrome c oxidase subunit II; Provisional
Probab=62.44 E-value=26 Score=33.73 Aligned_cols=77 Identities=8% Similarity=0.043 Sum_probs=55.1
Q ss_pred EEEEccCCcEEEEEEEcCCCCCCCccccCCCceEEeecCCCCCCCCCCCcCCCCCCceeeEEeCCCCEEEEEEEccCcce
Q 009283 410 SVMAADFRGFAEVVFENPEDTLQSWHIDGHNFFAVGMDGGEWTPASRLTYNLRDTISRCTVQVYPKSWTAVYVPLDNVGM 489 (538)
Q Consensus 410 ~~~~~~~g~~v~~~l~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adnpG~ 489 (538)
+.+.++.|+.+++.++..+-. |.|+|-+-|. ..|.+ ||....+.+.++.||.
T Consensus 140 n~lvlP~~~~v~~~~tS~DVi--------Hsf~iP~lg~-----------------k~dai---PG~~~~~~~~~~~~G~ 191 (230)
T MTH00185 140 HRMVVPMESPIRVLITAEDVL--------HSWTVPALGV-----------------KMDAV---PGRLNQATFIISRPGL 191 (230)
T ss_pred CeEEEecCCEEEEEEEcCccc--------ccccccccCc-----------------eeEec---CCceEEEEEEeCCcEE
Confidence 456789999999999988733 5566654432 23443 6788888999999999
Q ss_pred eeeeecchhhh-hcceEEEEEEecCC
Q 009283 490 WNIRSENWARQ-YLGQQFYLRVYSSA 514 (538)
Q Consensus 490 w~~HCHil~H~-d~GMm~~~~V~~p~ 514 (538)
+.--|.-+-.. |.-|-..++|++++
T Consensus 192 ~~g~Cse~CG~~Hs~M~~~v~vv~~~ 217 (230)
T MTH00185 192 YYGQCSEICGANHSFMPIVVEAVPLE 217 (230)
T ss_pred EEEEchhhcCcCcCCCeEEEEEECHH
Confidence 99999986666 44566666666553
No 97
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=60.37 E-value=36 Score=26.92 Aligned_cols=56 Identities=20% Similarity=0.289 Sum_probs=28.1
Q ss_pred eEEEecCCEEEEEEEeCCCCCceeeeccccCCCCCCCCCCCCCC----CCCCCCCeEEEEEEecCC---cccee
Q 009283 58 SIEAVTNDNLIISVFNALDEPFLISWNGVQQRRNSWQDGVYGTN----CPIPPGKNFTYVLQVKDQ---IGSYF 124 (538)
Q Consensus 58 ~i~v~~Gd~v~v~~~N~l~~~~siH~HG~~~~~~~~~DG~~~tq----~~i~pG~~~~Y~f~~~~~---~Gt~w 124 (538)
+|+..-|++..+.|.|.-.+ .+ =-|++|...+| ..|.||++.+|++..+.. +|+|.
T Consensus 17 ~l~f~sgq~~D~~v~d~~g~---------~v--wrwS~~~~FtQal~~~~l~pGe~~~~~~~~~~~~~~~G~Y~ 79 (82)
T PF12690_consen 17 TLQFPSGQRYDFVVKDKEGK---------EV--WRWSDGKMFTQALQEETLEPGESLTYEETWDLKDLSPGEYT 79 (82)
T ss_dssp EEEESSS--EEEEEE-TT-----------EE--EETTTT-------EEEEE-TT-EEEEEEEESS----SEEEE
T ss_pred EEEeCCCCEEEEEEECCCCC---------EE--EEecCCchhhheeeEEEECCCCEEEEEEEECCCCCCCceEE
Confidence 45555666666666644111 11 12677776555 359999999999999733 68875
No 98
>PF05938 Self-incomp_S1: Plant self-incompatibility protein S1; InterPro: IPR010264 This family consists of a series of plant proteins which are related to the Papaver rhoeas S1 self-incompatibility protein. Self-incompatibility (SI) is the single most important outbreeding device found in angiosperms and is a mechanism that regulates the acceptance or rejection of pollen. S1 is known to exhibit specific pollen-inhibitory properties [].
Probab=59.48 E-value=46 Score=27.68 Aligned_cols=71 Identities=10% Similarity=0.295 Sum_probs=46.2
Q ss_pred EEEEEeCCCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCeEEEEEEecCCccceeeecCchhhhhcceeeEEEEecCC
Q 009283 68 IISVFNALDEPFLISWNGVQQRRNSWQDGVYGTNCPIPPGKNFTYVLQVKDQIGSYFYFPSLAFHKAAGGYGGIKIASRP 147 (538)
Q Consensus 68 ~v~~~N~l~~~~siH~HG~~~~~~~~~DG~~~tq~~i~pG~~~~Y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~ 147 (538)
.|.++|.|.....|..|=-. .. -| .| ...+.||+++...|.. +-.|+--|.|+... ....-..-+.|....
T Consensus 2 ~V~I~N~L~~~~~L~vhC~S--~d--~D--lg-~~~l~~g~~~~~~F~~-~~~~~t~f~C~~~~-~~~~~~~~f~vy~~~ 72 (110)
T PF05938_consen 2 HVVIINNLGPGKILTVHCKS--KD--DD--LG-WHVLKPGQSYSFSFRD-NFFGTTLFWCHFRW-PGGKYHHSFDVYRSS 72 (110)
T ss_pred EEEEEECCCCCCeEEEEeeC--CC--cc--CC-CEECCCCCEEEEEEec-CcCCceeEEEEEEE-CCccEEEEEEEEecc
Confidence 58999999766666666542 11 12 11 1358999999999987 45688888898765 111136666665543
No 99
>COG3354 FlaG Putative archaeal flagellar protein G [Cell motility and secretion]
Probab=59.40 E-value=1.2e+02 Score=26.77 Aligned_cols=83 Identities=24% Similarity=0.305 Sum_probs=54.2
Q ss_pred CeEEEcCCCCCCceEEEecC-CEEEEEEEecCCCceEEEEEeCCeeEEEEEcCeecccce-------ecEEEEcCCCeE-
Q 009283 189 DGLVINGRGSNANTFTVDQG-KTYRFRISNVGISTSINFRIQGHKMLLVEVEGTHTLQNT-------YDSLDIHLGQSY- 259 (538)
Q Consensus 189 ~~~liNG~~~~~p~~~v~~G-~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~~p~~-------~~~v~l~pgeR~- 259 (538)
|.-.||.-+ .+...-..| .+|.|.+-|.|... +.++...++|+ +||+.+.|.. -+++.|.|||--
T Consensus 51 dFaIIndPg--~i~~~~~~g~~t~t~yiKNtG~~~---~~fd~~sitVl-iDG~iv~~a~~~~~~~~gs~i~l~PG~Vg~ 124 (154)
T COG3354 51 DFAIINDPG--QIPYVGTDGPYTYTFYIKNTGSDS---IAFDNTSITVL-IDGNIVTPAYVTFTSVNGSSIRLSPGQVGR 124 (154)
T ss_pred cEEEecCCC--CCccccCCCceEEEEEEecCCCcc---cccCCCeEEEE-EcCcEeccceEEEEecCCCeeEecCCceee
Confidence 455666655 343333222 47899999999863 46778888876 8998876532 357889999988
Q ss_pred EEEEEeCCCCcceEEEEEe
Q 009283 260 SVLVRADQPPQGYYIVIST 278 (538)
Q Consensus 260 dv~v~~~~~~g~y~i~~~~ 278 (538)
++.+.-. ..|.-.+....
T Consensus 125 ev~vn~~-lSGyhri~V~~ 142 (154)
T COG3354 125 EVTVNEA-LSGYHRIVVSL 142 (154)
T ss_pred EEEeccC-CCcceEEEEEc
Confidence 6666544 34554555543
No 100
>MTH00008 COX2 cytochrome c oxidase subunit II; Validated
Probab=57.72 E-value=37 Score=32.62 Aligned_cols=77 Identities=8% Similarity=0.076 Sum_probs=54.9
Q ss_pred EEEEccCCcEEEEEEEcCCCCCCCccccCCCceEEeecCCCCCCCCCCCcCCCCCCceeeEEeCCCCEEEEEEEccCcce
Q 009283 410 SVMAADFRGFAEVVFENPEDTLQSWHIDGHNFFAVGMDGGEWTPASRLTYNLRDTISRCTVQVYPKSWTAVYVPLDNVGM 489 (538)
Q Consensus 410 ~~~~~~~g~~v~~~l~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adnpG~ 489 (538)
+.+.+|.|+.|++.+++.+ -. |.|+|-+.|. ..|.+ ||....+.|.++.||.
T Consensus 140 n~lvlP~~~~v~~~~tS~D-Vi-------Hsf~vP~~~~-----------------k~dai---PG~~~~~~~~~~~~G~ 191 (228)
T MTH00008 140 NRAVLPMQTEIRVLVTAAD-VI-------HSWTVPSLGV-----------------KVDAV---PGRLNQIGFTITRPGV 191 (228)
T ss_pred ceEEEecCCEEEEEEEeCC-cc-------ccccccccCc-----------------ceecC---CCceEEEEEEeCCCEE
Confidence 4567899999999999976 33 4555544331 12333 6888889999999999
Q ss_pred eeeeecchhhh-hcceEEEEEEecCC
Q 009283 490 WNIRSENWARQ-YLGQQFYLRVYSSA 514 (538)
Q Consensus 490 w~~HCHil~H~-d~GMm~~~~V~~p~ 514 (538)
+.--|.-+-.. |.-|-..++|++++
T Consensus 192 ~~g~Cse~CG~~Hs~M~~~v~vv~~~ 217 (228)
T MTH00008 192 FYGQCSEICGANHSFMPIVLEAVDTK 217 (228)
T ss_pred EEEEChhhcCcCccCceeEEEEECHH
Confidence 99999876666 45666667776654
No 101
>MTH00117 COX2 cytochrome c oxidase subunit II; Provisional
Probab=57.10 E-value=34 Score=32.83 Aligned_cols=77 Identities=6% Similarity=0.009 Sum_probs=55.6
Q ss_pred EEEEccCCcEEEEEEEcCCCCCCCccccCCCceEEeecCCCCCCCCCCCcCCCCCCceeeEEeCCCCEEEEEEEccCcce
Q 009283 410 SVMAADFRGFAEVVFENPEDTLQSWHIDGHNFFAVGMDGGEWTPASRLTYNLRDTISRCTVQVYPKSWTAVYVPLDNVGM 489 (538)
Q Consensus 410 ~~~~~~~g~~v~~~l~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adnpG~ 489 (538)
+.+.++.|..+++.++..+-. |.|+|-+.+. ..|.+ ||....+.|.++.||.
T Consensus 140 n~lvlP~~~~v~~~~tS~DVi--------Hsf~vP~lg~-----------------K~Dav---PG~~n~~~~~~~~~G~ 191 (227)
T MTH00117 140 HRMVIPMESPIRILITAEDVL--------HSWAVPSLGV-----------------KTDAV---PGRLNQTSFITTRPGV 191 (227)
T ss_pred ceEEEecCceEEEEEEecchh--------hcccccccCc-----------------eeEec---CCceEEEEEEEcccce
Confidence 456789999999999988733 5666655432 23444 6888889999999999
Q ss_pred eeeeecchhhh-hcceEEEEEEecCC
Q 009283 490 WNIRSENWARQ-YLGQQFYLRVYSSA 514 (538)
Q Consensus 490 w~~HCHil~H~-d~GMm~~~~V~~p~ 514 (538)
+.--|--+-.. |.-|-..++|++++
T Consensus 192 y~g~CsE~CG~~Hs~M~~~v~vv~~~ 217 (227)
T MTH00117 192 FYGQCSEICGANHSFMPIVVESVPLK 217 (227)
T ss_pred EEEEeccccccCccCCeEEEEEcCHH
Confidence 99999886666 44555566666554
No 102
>PF08194 DIM: DIM protein; InterPro: IPR013172 Drosophila immune-induced molecules (DIMs) are short proteins induced during the immune response of Drosophila []. This entry includes DIMs 1 to 4 and DIM23.
Probab=55.25 E-value=16 Score=23.97 Aligned_cols=18 Identities=28% Similarity=0.322 Sum_probs=10.2
Q ss_pred CcchhhHHHHHHHHHHHh
Q 009283 1 MASYSSICCLLLVFMLVS 18 (538)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~ 18 (538)
|+.+++.+.+++++|++.
T Consensus 1 Mk~l~~a~~l~lLal~~a 18 (36)
T PF08194_consen 1 MKCLSLAFALLLLALAAA 18 (36)
T ss_pred CceeHHHHHHHHHHHHhc
Confidence 666766555555554443
No 103
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=54.20 E-value=63 Score=25.76 Aligned_cols=64 Identities=13% Similarity=0.135 Sum_probs=41.7
Q ss_pred cCceEEEe---cCCEEEEEEEeCCCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCeEEEEEEecCCccceeee
Q 009283 55 PGPSIEAV---TNDNLIISVFNALDEPFLISWNGVQQRRNSWQDGVYGTNCPIPPGKNFTYVLQVKDQIGSYFYF 126 (538)
Q Consensus 55 pgP~i~v~---~Gd~v~v~~~N~l~~~~siH~HG~~~~~~~~~DG~~~tq~~i~pG~~~~Y~f~~~~~~Gt~wYH 126 (538)
+.|.+.++ ....|.|++.|....+..+....... ..+.+ .+..|.||++.+..|... ..--||.
T Consensus 7 ~~~~v~~~~~~~~g~l~l~l~N~g~~~~~~~v~~~~y-----~~~~~-~~~~v~ag~~~~~~w~l~--~s~gwYD 73 (89)
T PF05506_consen 7 YAPEVTARYDPATGNLRLTLSNPGSAAVTFTVYDNAY-----GGGGP-WTYTVAAGQTVSLTWPLA--ASGGWYD 73 (89)
T ss_pred CCCEEEEEEECCCCEEEEEEEeCCCCcEEEEEEeCCc-----CCCCC-EEEEECCCCEEEEEEeec--CCCCcEE
Confidence 35666665 24589999999987777776665321 11111 235699999999999883 3334665
No 104
>MTH00076 COX2 cytochrome c oxidase subunit II; Provisional
Probab=52.64 E-value=38 Score=32.50 Aligned_cols=77 Identities=5% Similarity=0.012 Sum_probs=55.2
Q ss_pred EEEEccCCcEEEEEEEcCCCCCCCccccCCCceEEeecCCCCCCCCCCCcCCCCCCceeeEEeCCCCEEEEEEEccCcce
Q 009283 410 SVMAADFRGFAEVVFENPEDTLQSWHIDGHNFFAVGMDGGEWTPASRLTYNLRDTISRCTVQVYPKSWTAVYVPLDNVGM 489 (538)
Q Consensus 410 ~~~~~~~g~~v~~~l~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adnpG~ 489 (538)
+.+.++.|..+++.++..+-. |.|+|-+.|. ..|.+ ||....+.|.++.||.
T Consensus 140 n~l~lP~~~~v~~~~tS~DVi--------Hsf~vP~lg~-----------------k~da~---PG~~n~~~~~~~~~G~ 191 (228)
T MTH00076 140 NRMVVPMESPIRMLITAEDVL--------HSWAVPSLGI-----------------KTDAI---PGRLNQTSFIASRPGV 191 (228)
T ss_pred ceEEEecCCEEEEEEEecccc--------ccccccccCc-----------------eEEcc---CCcceeEEEEeCCcEE
Confidence 456789999999999987632 4565544431 23443 6777888999999999
Q ss_pred eeeeecchhhh-hcceEEEEEEecCC
Q 009283 490 WNIRSENWARQ-YLGQQFYLRVYSSA 514 (538)
Q Consensus 490 w~~HCHil~H~-d~GMm~~~~V~~p~ 514 (538)
+.--|.-+-.. |..|-..++|++++
T Consensus 192 ~~g~C~e~CG~~Hs~M~~~v~vv~~~ 217 (228)
T MTH00076 192 YYGQCSEICGANHSFMPIVVEATPLN 217 (228)
T ss_pred EEEEChhhcCccccCCceEEEEeCHH
Confidence 99999986655 55666667776654
No 105
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=51.63 E-value=5.9 Score=32.35 Aligned_cols=12 Identities=42% Similarity=0.238 Sum_probs=6.8
Q ss_pred CcchhhHHHHHH
Q 009283 1 MASYSSICCLLL 12 (538)
Q Consensus 1 ~~~~~~~~~~~~ 12 (538)
|.++++||.+++
T Consensus 1 MaSK~~llL~l~ 12 (95)
T PF07172_consen 1 MASKAFLLLGLL 12 (95)
T ss_pred CchhHHHHHHHH
Confidence 677765544333
No 106
>MTH00047 COX2 cytochrome c oxidase subunit II; Provisional
Probab=49.46 E-value=2.2e+02 Score=26.52 Aligned_cols=76 Identities=12% Similarity=-0.007 Sum_probs=49.6
Q ss_pred eEEEecCCEEEEEEEeCCCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCeEEEEEEecCCccceeeecCc-hhhhhcc
Q 009283 58 SIEAVTNDNLIISVFNALDEPFLISWNGVQQRRNSWQDGVYGTNCPIPPGKNFTYVLQVKDQIGSYFYFPSL-AFHKAAG 136 (538)
Q Consensus 58 ~i~v~~Gd~v~v~~~N~l~~~~siH~HG~~~~~~~~~DG~~~tq~~i~pG~~~~Y~f~~~~~~Gt~wYH~H~-~~q~~~G 136 (538)
.+.+..|.+|+++++=. +-- |+..++. .. -+...-||..-...|++ +++|+|.-.|.. -+.-...
T Consensus 117 ~l~lp~g~~v~~~ltS~-DVi-----Hsf~vp~---l~----~k~d~~PG~~~~~~~~~-~~~G~y~g~C~e~CG~~H~~ 182 (194)
T MTH00047 117 PLRLVYGVPYHLLVTSS-DVI-----HSFSVPD---LN----LKMDAIPGRINHLFFCP-DRHGVFVGYCSELCGVGHSY 182 (194)
T ss_pred eEEEeCCCEEEeeeecC-ccc-----cceeccc---cC----ceeecCCCceEEEEEEc-CCCEEEEEEeehhhCcCccc
Confidence 47888899988888765 222 3433321 11 11235689998888987 689999999883 1222345
Q ss_pred eeeEEEEecCC
Q 009283 137 GYGGIKIASRP 147 (538)
Q Consensus 137 l~G~liV~~~~ 147 (538)
|.+.+.|.+++
T Consensus 183 M~~~v~v~~~~ 193 (194)
T MTH00047 183 MPIVIEVVDVD 193 (194)
T ss_pred CcEEEEEEcCC
Confidence 88888887654
No 107
>PF14481 Fimbrial_PilY2: Type 4 fimbrial biogenesis protein PilY2; PDB: 3TDQ_A.
Probab=48.77 E-value=2.8 Score=34.29 Aligned_cols=31 Identities=23% Similarity=0.129 Sum_probs=15.8
Q ss_pred cCceE-EEecCCEEEEE--EEeCCCCCceeeecc
Q 009283 55 PGPSI-EAVTNDNLIIS--VFNALDEPFLISWNG 85 (538)
Q Consensus 55 pgP~i-~v~~Gd~v~v~--~~N~l~~~~siH~HG 85 (538)
-||.| .+++|..|-.. +.-.+++-++|.+|-
T Consensus 63 ~~p~ifqvrpGsvVS~sGsvss~~p~I~si~i~r 96 (118)
T PF14481_consen 63 GGPVIFQVRPGSVVSFSGSVSSPLPTITSIYILR 96 (118)
T ss_dssp TEEGGGT--TT-EEEEEEE--SSS-EEEEEEE-H
T ss_pred CCceEEEEcCCcEEEEeeeecCCCcccceEEEEe
Confidence 37888 99999987664 333344555666654
No 108
>COG1470 Predicted membrane protein [Function unknown]
Probab=47.71 E-value=1.6e+02 Score=31.30 Aligned_cols=85 Identities=22% Similarity=0.354 Sum_probs=53.6
Q ss_pred ceEEEecCC--EEEEEEEecCCCc--eEEEEEeCCeeEEEEEcCeecccceecEEEEcCCCeEEEEE--EeCC--CCcce
Q 009283 201 NTFTVDQGK--TYRFRISNVGIST--SINFRIQGHKMLLVEVEGTHTLQNTYDSLDIHLGQSYSVLV--RADQ--PPQGY 272 (538)
Q Consensus 201 p~~~v~~G~--~~rlRliN~~~~~--~~~~~l~gh~~~via~DG~~~~p~~~~~v~l~pgeR~dv~v--~~~~--~~g~y 272 (538)
-.+++.+|+ ..+++|-|.|+.. -+.+.+++-.=|-+.+|+.-+ + .|.||||-.|-+ +++. .+|+|
T Consensus 389 ~~lt~taGee~~i~i~I~NsGna~LtdIkl~v~~PqgWei~Vd~~~I-----~--sL~pge~~tV~ltI~vP~~a~aGdY 461 (513)
T COG1470 389 YRLTITAGEEKTIRISIENSGNAPLTDIKLTVNGPQGWEIEVDESTI-----P--SLEPGESKTVSLTITVPEDAGAGDY 461 (513)
T ss_pred EEEEecCCccceEEEEEEecCCCccceeeEEecCCccceEEECcccc-----c--ccCCCCcceEEEEEEcCCCCCCCcE
Confidence 467788886 5689999999763 455666665557777777632 2 356676655544 4443 56899
Q ss_pred EEEEEeeccCCccceEEEEEec
Q 009283 273 YIVISTRFTSQVLSATSVLHYS 294 (538)
Q Consensus 273 ~i~~~~~~~~~~~~~~ail~y~ 294 (538)
.+......+. ......||+.
T Consensus 462 ~i~i~~ksDq--~s~e~tlrV~ 481 (513)
T COG1470 462 RITITAKSDQ--ASSEDTLRVV 481 (513)
T ss_pred EEEEEEeecc--ccccceEEEE
Confidence 9887765442 2334445554
No 109
>MTH00051 COX2 cytochrome c oxidase subunit II; Provisional
Probab=47.42 E-value=59 Score=31.37 Aligned_cols=77 Identities=10% Similarity=0.073 Sum_probs=54.0
Q ss_pred EEEEccCCcEEEEEEEcCCCCCCCccccCCCceEEeecCCCCCCCCCCCcCCCCCCceeeEEeCCCCEEEEEEEccCcce
Q 009283 410 SVMAADFRGFAEVVFENPEDTLQSWHIDGHNFFAVGMDGGEWTPASRLTYNLRDTISRCTVQVYPKSWTAVYVPLDNVGM 489 (538)
Q Consensus 410 ~~~~~~~g~~v~~~l~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adnpG~ 489 (538)
+.+.++.|+.+++.+++.+ -. |.|+|-+.|. ..|.+ ||....+.|.++.||.
T Consensus 144 n~lvlP~~~~v~~~itS~D-Vi-------Hsf~vp~lg~-----------------k~dai---PG~~~~~~~~~~~~G~ 195 (234)
T MTH00051 144 NRLIVPIQTQVRVLVTAAD-VL-------HSFAVPSLSV-----------------KIDAV---PGRLNQTSFFIKRPGV 195 (234)
T ss_pred eEEEEecCcEEEEEEEeCc-hh-------ccccccccCc-----------------eeEcc---CCceEeEEEEeCCCEE
Confidence 4567899999999999886 33 4455544321 23433 6777888999999999
Q ss_pred eeeeecchhhh-hcceEEEEEEecCC
Q 009283 490 WNIRSENWARQ-YLGQQFYLRVYSSA 514 (538)
Q Consensus 490 w~~HCHil~H~-d~GMm~~~~V~~p~ 514 (538)
+---|.-+-.. |.-|-..++|++++
T Consensus 196 y~g~Cse~CG~~Hs~M~i~v~vv~~~ 221 (234)
T MTH00051 196 FYGQCSEICGANHSFMPIVIEGVSLD 221 (234)
T ss_pred EEEEChhhcCcccccCeeEEEEECHH
Confidence 99999876555 44555666666654
No 110
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=47.21 E-value=82 Score=32.65 Aligned_cols=86 Identities=19% Similarity=0.263 Sum_probs=57.5
Q ss_pred eEEEcCCCCCCceEEEecCCEEEEEEEecCCCceEEEEEeCCeeEEEEEcCeecccceecEEEEcCCCeEEEEEEeCCCC
Q 009283 190 GLVINGRGSNANTFTVDQGKTYRFRISNVGISTSINFRIQGHKMLLVEVEGTHTLQNTYDSLDIHLGQSYSVLVRADQPP 269 (538)
Q Consensus 190 ~~liNG~~~~~p~~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~~~v~l~pgeR~dv~v~~~~~~ 269 (538)
.++|+...+....++|++|+ ++|.+.|.+... . .|.++ +|..+ .-..=.|+||....+.+++ .|
T Consensus 33 ~Vti~d~~c~p~~~tVpAG~-~~f~V~N~~~~~-~-------Efe~~--~~~~v---v~e~EnIaPG~s~~l~~~L--~p 96 (375)
T PRK10378 33 KVTVNDKQCEPMTLTVNAGK-TQFIIQNHSQKA-L-------EWEIL--KGVMV---VEERENIAPGFSQKMTANL--QP 96 (375)
T ss_pred EEEEECCccccCceeeCCCC-EEEEEEeCCCCc-c-------eEEee--ccccc---cccccccCCCCceEEEEec--CC
Confidence 47777777667899999996 999999998763 3 34433 22211 0112278999988888777 58
Q ss_pred cceEEEEEeeccCCccceEEEEEecCC
Q 009283 270 QGYYIVISTRFTSQVLSATSVLHYSNS 296 (538)
Q Consensus 270 g~y~i~~~~~~~~~~~~~~ail~y~~~ 296 (538)
|+|.+.+... + ...+.+.+.|.
T Consensus 97 GtY~~~C~~~--~---~~~g~l~Vtg~ 118 (375)
T PRK10378 97 GEYDMTCGLL--T---NPKGKLIVKGE 118 (375)
T ss_pred ceEEeecCcC--C---CCCceEEEeCC
Confidence 9999998442 1 12455666654
No 111
>MTH00023 COX2 cytochrome c oxidase subunit II; Validated
Probab=43.86 E-value=86 Score=30.38 Aligned_cols=77 Identities=9% Similarity=0.099 Sum_probs=55.3
Q ss_pred EEEEccCCcEEEEEEEcCCCCCCCccccCCCceEEeecCCCCCCCCCCCcCCCCCCceeeEEeCCCCEEEEEEEccCcce
Q 009283 410 SVMAADFRGFAEVVFENPEDTLQSWHIDGHNFFAVGMDGGEWTPASRLTYNLRDTISRCTVQVYPKSWTAVYVPLDNVGM 489 (538)
Q Consensus 410 ~~~~~~~g~~v~~~l~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adnpG~ 489 (538)
+.+.++.|..|++.++..+ -.|- |+|-+.+ ..+|.+ ||....+.|.++.||.
T Consensus 151 n~lvlP~~~~v~~~~tS~D-ViHs-------f~iP~lg-----------------vK~Dai---PG~~n~~~~~~~~~G~ 202 (240)
T MTH00023 151 NRLVVPINTHVRILVTGAD-VLHS-------FAVPSLG-----------------LKIDAV---PGRLNQTGFFIKRPGV 202 (240)
T ss_pred ceEEEecCCEEEEEEEcCC-cccc-------eeecccC-----------------ceeecC---CCcceeEEEEcCCCEE
Confidence 4567899999999999876 3354 4443332 124544 5777788999999999
Q ss_pred eeeeecchhhh-hcceEEEEEEecCC
Q 009283 490 WNIRSENWARQ-YLGQQFYLRVYSSA 514 (538)
Q Consensus 490 w~~HCHil~H~-d~GMm~~~~V~~p~ 514 (538)
+.-.|.-+-.. |.-|-..++|++++
T Consensus 203 y~g~C~e~CG~~Hs~M~~~v~vv~~~ 228 (240)
T MTH00023 203 FYGQCSEICGANHSFMPIVIEAVSLD 228 (240)
T ss_pred EEEEchhhcCcCccCCeEEEEEECHH
Confidence 99999987666 55666677777664
No 112
>PTZ00047 cytochrome c oxidase subunit II; Provisional
Probab=43.67 E-value=1.3e+02 Score=27.10 Aligned_cols=76 Identities=9% Similarity=0.169 Sum_probs=51.6
Q ss_pred EEEccCCcEEEEEEEcCCCCCCCccccCCCceEEeecCCCCCCCCCCCcCCCCCCceeeEEeCCCCEEEEEEEccCccee
Q 009283 411 VMAADFRGFAEVVFENPEDTLQSWHIDGHNFFAVGMDGGEWTPASRLTYNLRDTISRCTVQVYPKSWTAVYVPLDNVGMW 490 (538)
Q Consensus 411 ~~~~~~g~~v~~~l~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adnpG~w 490 (538)
.+.++.|..+++.++..+ -.|.|.+- +.+ ...|.+ ||....+.|.++.||.|
T Consensus 74 ~LvLP~g~~Vr~~lTS~D-VIHSF~VP-------~lg-----------------vK~Dav---PGr~n~l~~~~~~~G~y 125 (162)
T PTZ00047 74 RLTLPTRTHIRFLITATD-VIHSWSVP-------SLG-----------------IKADAI---PGRLHKINTFILREGVF 125 (162)
T ss_pred CEEEeCCCEEEEEEEeCc-cceeeecc-------ccC-----------------ceeecc---CCceEEEEEecCCCeEE
Confidence 456889999999999776 33555443 322 123433 67777889999999999
Q ss_pred eeeecchhhhhc-ceEEEEEEecCC
Q 009283 491 NIRSENWARQYL-GQQFYLRVYSSA 514 (538)
Q Consensus 491 ~~HCHil~H~d~-GMm~~~~V~~p~ 514 (538)
...|.-+--... .|-..++|++++
T Consensus 126 ~gqCsElCG~gHs~M~~~V~vvs~~ 150 (162)
T PTZ00047 126 YGQCSEMCGTLHGFMPIVVEAVSPE 150 (162)
T ss_pred EEEcchhcCcCccCceEEEEEeCHH
Confidence 999997554433 455556666554
No 113
>MTH00139 COX2 cytochrome c oxidase subunit II; Provisional
Probab=42.93 E-value=70 Score=30.67 Aligned_cols=77 Identities=8% Similarity=0.083 Sum_probs=54.9
Q ss_pred EEEEccCCcEEEEEEEcCCCCCCCccccCCCceEEeecCCCCCCCCCCCcCCCCCCceeeEEeCCCCEEEEEEEccCcce
Q 009283 410 SVMAADFRGFAEVVFENPEDTLQSWHIDGHNFFAVGMDGGEWTPASRLTYNLRDTISRCTVQVYPKSWTAVYVPLDNVGM 489 (538)
Q Consensus 410 ~~~~~~~g~~v~~~l~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adnpG~ 489 (538)
+.+.++.|+.+++.++..+ -.| +|+|-+.+. .+|.+ ||-...+.|.++.||.
T Consensus 140 n~l~lP~~~~v~~~~tS~D-ViH-------sf~vP~l~~-----------------K~Dai---PG~~n~~~~~~~~~G~ 191 (226)
T MTH00139 140 NRLVLPYKSNIRALITAAD-VLH-------SWTVPSLGV-----------------KIDAV---PGRLNQVGFFINRPGV 191 (226)
T ss_pred ceEEEecCCEEEEEEecCc-ccc-------ceeccccCc-----------------cccCC---CCcEEEEEEEcCCCEE
Confidence 4567899999999999876 334 455544432 34555 5777889999999999
Q ss_pred eeeeecchhhh-hcceEEEEEEecCC
Q 009283 490 WNIRSENWARQ-YLGQQFYLRVYSSA 514 (538)
Q Consensus 490 w~~HCHil~H~-d~GMm~~~~V~~p~ 514 (538)
+.--|--+--. |.-|-..++|++++
T Consensus 192 y~g~CsE~CG~~Hs~M~~~v~vv~~~ 217 (226)
T MTH00139 192 FYGQCSEICGANHSFMPIVVEAISPK 217 (226)
T ss_pred EEEEChhhcCcCcCCCeEEEEEeCHH
Confidence 99999876655 44556666666654
No 114
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=42.34 E-value=50 Score=35.29 Aligned_cols=59 Identities=17% Similarity=-0.025 Sum_probs=32.7
Q ss_pred hhHHHHHHHHHHHhccccCCCeEEEEEEEEEEEecCCCeeeEEEEEcCcCcCceEEEecCCEEE
Q 009283 5 SSICCLLLVFMLVSCTRGESPYRFFNWNVTYGDIYPLGVKQQGILINGQFPGPSIEAVTNDNLI 68 (538)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~~~~~~~~Ng~~pgP~i~v~~Gd~v~ 68 (538)
..++|+++++++.|+..+. --......+.+.|.+....+-...|..- -.|.|++||.|+
T Consensus 24 ~~~~~~~~~~~~~WA~~~~----~~~~v~a~G~v~p~~~~~~vq~~~~G~v-~~i~V~eG~~V~ 82 (457)
T TIGR01000 24 IVPIFLLLVFLVLFSLFAK----KEIVIRTTGTIEPAKILSKIQSTSNNAI-KENYLKENKFVK 82 (457)
T ss_pred HHHHHHHHHHHHHHHHhEe----eeEEEEEeEEEEecCceEEEEcCCCcEE-EEEEcCCCCEec
Confidence 3344555555556654444 2344455577777776555544443332 357778887753
No 115
>TIGR01432 QOXA cytochrome aa3 quinol oxidase, subunit II. This enzyme catalyzes the oxidation of quinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. This subunit contains two transmembrane helices and a large external domain responsible for the binding and oxidation of quinol. QuoX is (presently) only found in gram positive bacteria of the Bacillus/Staphylococcus group. Like CyoA, the ubiquinol oxidase found in proteobacteria, the residues responsible for the ligation of Cu(a) and cytochrome c (found in the related cyt. c oxidases) are absent. Unlike CyoA, QoxA is in complex with a subunit I which contains cytochromes a similar to the cyt. c oxidases (as opposed to cytochromes b).
Probab=41.38 E-value=3.2e+02 Score=25.93 Aligned_cols=75 Identities=13% Similarity=0.083 Sum_probs=49.9
Q ss_pred ceEEEecCCEEEEEEEeCCCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCeEEEEEEecCCccceeeecC--chhhhh
Q 009283 57 PSIEAVTNDNLIISVFNALDEPFLISWNGVQQRRNSWQDGVYGTNCPIPPGKNFTYVLQVKDQIGSYFYFPS--LAFHKA 134 (538)
Q Consensus 57 P~i~v~~Gd~v~v~~~N~l~~~~siH~HG~~~~~~~~~DG~~~tq~~i~pG~~~~Y~f~~~~~~Gt~wYH~H--~~~q~~ 134 (538)
..|.+..|..|++.++-+ . .|| ...++. .- -+.-.-||..-...|++ +++|+|+=.|- .|.+-
T Consensus 130 n~l~iP~g~~v~~~ltS~---D-ViH--sf~vP~---l~----~k~daiPG~~~~~~~~~-~~~G~y~g~Cae~CG~~H- 194 (217)
T TIGR01432 130 NYLNIPKDRPVLFKLQSA---D-TMT--SFWIPQ---LG----GQKYAMTGMTMNWYLQA-DQVGTYRGRNANFNGEGF- 194 (217)
T ss_pred CcEEEECCCEEEEEEECC---c-hhh--hhhchh---hC----ceeecCCCceEEEEEEe-CCCEEEEEEehhhcCccc-
Confidence 568999999999999876 2 233 333221 11 12335689999999998 68999998886 23222
Q ss_pred cceeeEEEEecC
Q 009283 135 AGGYGGIKIASR 146 (538)
Q Consensus 135 ~Gl~G~liV~~~ 146 (538)
.-|...+.|.++
T Consensus 195 s~M~~~v~v~~~ 206 (217)
T TIGR01432 195 ADQTFDVNAVSE 206 (217)
T ss_pred cCCeEEEEEeCH
Confidence 347777777654
No 116
>PF10969 DUF2771: Protein of unknown function (DUF2771); InterPro: IPR024495 This bacterial family of proteins has no known function.
Probab=40.18 E-value=64 Score=29.18 Aligned_cols=51 Identities=12% Similarity=0.274 Sum_probs=29.6
Q ss_pred eEEEecCCEEEEEEEeCCCC-CceeeeccccCCCCCCCCCCCCCCCCCCCCCeEEEEEEe
Q 009283 58 SIEAVTNDNLIISVFNALDE-PFLISWNGVQQRRNSWQDGVYGTNCPIPPGKNFTYVLQV 116 (538)
Q Consensus 58 ~i~v~~Gd~v~v~~~N~l~~-~~siH~HG~~~~~~~~~DG~~~tq~~i~pG~~~~Y~f~~ 116 (538)
.|.|.+|++|+|.|-....+ +=++ +.+ +.|.....+....||++++|....
T Consensus 70 ~l~V~~~~~vqlsVP~~Ia~~pW~l----l~i----Y~dp~~~~~~~~~~~~~~avti~~ 121 (161)
T PF10969_consen 70 ELPVPPGEPVQLSVPEEIADAPWRL----LAI----YDDPAGNDEDEFRPGERTAVTIPS 121 (161)
T ss_pred EEEcCCCCeEEEeCCHHHccCCcEE----EEE----EECCCCceeeEecCCCceEEEEec
Confidence 79999999999988666432 2111 111 122111123346788887777763
No 117
>PF04379 DUF525: Protein of unknown function (DUF525); InterPro: IPR007474 This domain is found in the bacterial protein ApaG and at the C termini of some F-box proteins (IPR001810 from INTERPRO). F-box proteins contain a carboxy-terminal domain that interacts with protein substrates []. The ApaG domain is ~125 amino acids in length, and is named after the bacterial ApaG protein, of which it forms the core. The Salmonella typhimurium ApaG domain protein, CorD, is involved in Co(2+) resistance and Mg(2+) efflux. Tertiary structures from different ApaG proteins show a fold of several beta-sheets. The ApaG domain may be involved in protein-protein interactions which could be implicated in substrate-specificity [, , ].; PDB: 2F1E_A 1XVS_A 1TZA_A 1XQ4_D.
Probab=38.87 E-value=81 Score=25.46 Aligned_cols=50 Identities=16% Similarity=0.288 Sum_probs=27.9
Q ss_pred EEEEEEEecCCCceEEEEEeCCeeEEEEEcCeecc---c-ceecEEEEcCCCeEEEE
Q 009283 210 TYRFRISNVGISTSINFRIQGHKMLLVEVEGTHTL---Q-NTYDSLDIHLGQSYSVL 262 (538)
Q Consensus 210 ~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~~---p-~~~~~v~l~pgeR~dv~ 262 (538)
.|++||-|.+.. .+.|-...+.+...||...+ + +.-+.=.|.|||.+...
T Consensus 15 ~Y~I~I~N~~~~---~vqL~sR~W~I~d~~g~~~~V~G~GVVG~~P~L~pGe~f~Y~ 68 (90)
T PF04379_consen 15 AYRIRIENHSDE---SVQLLSRHWIITDADGHVEEVEGEGVVGQQPVLAPGESFEYT 68 (90)
T ss_dssp EEEEEEEE-SSS----EEEEEEEEEEEETTS-EEEEEEESBTTB--EE-TTEEEEEE
T ss_pred EEEEEEEECCCC---CEEEEccEEEEEeCCCCEEEEECCceEccCceECCCCcEEEc
Confidence 479999998886 35566666666666664321 1 22345567888866543
No 118
>PF14524 Wzt_C: Wzt C-terminal domain; PDB: 2R5O_B.
Probab=37.76 E-value=1.2e+02 Score=25.85 Aligned_cols=76 Identities=16% Similarity=0.222 Sum_probs=42.0
Q ss_pred CceEEEecCCEEEEEEEecCCCceEEEEEeCCeeEEEEEcCeeccc----ceecEEEEcCCCeEEEEEEeCC--CCcceE
Q 009283 200 ANTFTVDQGKTYRFRISNVGISTSINFRIQGHKMLLVEVEGTHTLQ----NTYDSLDIHLGQSYSVLVRADQ--PPQGYY 273 (538)
Q Consensus 200 ~p~~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~~p----~~~~~v~l~pgeR~dv~v~~~~--~~g~y~ 273 (538)
.+.-.+..|+.+++++-=......-.+. ..+.+...+|..+-- .....+....++++.+.++++. .+|.|.
T Consensus 26 ~~~~~~~~ge~~~i~i~~~~~~~i~~~~---~~~~i~~~~g~~v~~~~t~~~~~~~~~~~~g~~~~~~~i~~~L~~G~Y~ 102 (142)
T PF14524_consen 26 EPTSSFESGEPIRIRIDYEVNEDIDDPV---FGFAIRDSDGQRVFGTNTYDSGFPIPLSEGGTYEVTFTIPKPLNPGEYS 102 (142)
T ss_dssp ES-SSEETTSEEEEEEEEEESS-EEEEE---EEEEEEETT--EEEEEEHHHHT--EEE-TT-EEEEEEEEE--B-SEEEE
T ss_pred CEeeEEeCCCEEEEEEEEEECCCCCccE---EEEEEEcCCCCEEEEECccccCccccccCCCEEEEEEEEcCccCCCeEE
Confidence 3444467889888877554443222222 245555667765521 1123455555999999998875 689999
Q ss_pred EEEEe
Q 009283 274 IVIST 278 (538)
Q Consensus 274 i~~~~ 278 (538)
+.+..
T Consensus 103 i~v~l 107 (142)
T PF14524_consen 103 ISVGL 107 (142)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 98876
No 119
>PRK13202 ureB urease subunit beta; Reviewed
Probab=37.44 E-value=78 Score=26.10 Aligned_cols=59 Identities=24% Similarity=0.126 Sum_probs=41.5
Q ss_pred eEEEecC--CEEEEEEEeCCCCCc--eeeeccccCCCCCCCCCC---------C-CCCCCCCCCCeEEEEEEe
Q 009283 58 SIEAVTN--DNLIISVFNALDEPF--LISWNGVQQRRNSWQDGV---------Y-GTNCPIPPGKNFTYVLQV 116 (538)
Q Consensus 58 ~i~v~~G--d~v~v~~~N~l~~~~--siH~HG~~~~~~~~~DG~---------~-~tq~~i~pG~~~~Y~f~~ 116 (538)
.|.+++| .++.+.|+|.-+.+. .-|+|=..+......|=. | ||..-..||++.+.+...
T Consensus 12 ~I~ln~grr~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV~ 84 (104)
T PRK13202 12 DIEMNAAALSRLQMRIINAGDRPVQVGSHVHLPQANRALSFDRATAHGYRLDIPAATAVRFEPGIPQIVGLVP 84 (104)
T ss_pred CEEeCCCCCceEEEEEEeCCCCceEEccccchhhcCcceeecHhHhcCcccccCCCCeEEECCCCeEEEEEEE
Confidence 4899999 589999999998764 458887766544333321 2 344557888888887764
No 120
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria.
Probab=36.74 E-value=1e+02 Score=22.93 Aligned_cols=32 Identities=25% Similarity=0.548 Sum_probs=22.1
Q ss_pred EEEecCCEEEEEEEecCCCceEEEEEeCCeeEEEEEcC
Q 009283 203 FTVDQGKTYRFRISNVGISTSINFRIQGHKMLLVEVEG 240 (538)
Q Consensus 203 ~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG 240 (538)
+++.+|+..+||.-. ...+.+.+-..++.. +|
T Consensus 2 ~~L~~g~~~~lr~~~-----~~~l~v~~G~vWlT~-~g 33 (63)
T PF11142_consen 2 FELAPGETLSLRAAA-----GQRLRVESGRVWLTR-EG 33 (63)
T ss_pred EEeCCCceEEeEcCC-----CcEEEEccccEEEEC-CC
Confidence 577899999998544 233677777788754 44
No 121
>MTH00038 COX2 cytochrome c oxidase subunit II; Provisional
Probab=36.42 E-value=1.3e+02 Score=28.99 Aligned_cols=77 Identities=9% Similarity=0.148 Sum_probs=53.6
Q ss_pred EEEEccCCcEEEEEEEcCCCCCCCccccCCCceEEeecCCCCCCCCCCCcCCCCCCceeeEEeCCCCEEEEEEEccCcce
Q 009283 410 SVMAADFRGFAEVVFENPEDTLQSWHIDGHNFFAVGMDGGEWTPASRLTYNLRDTISRCTVQVYPKSWTAVYVPLDNVGM 489 (538)
Q Consensus 410 ~~~~~~~g~~v~~~l~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adnpG~ 489 (538)
+.+.++.|..+++.++..+ -.|-| +|-+.| ...|.+ ||....+.|.++.||.
T Consensus 140 n~lvlP~~~~v~~~~tS~D-ViHsf-------~iP~lg-----------------~k~dai---PG~~~~~~~~~~~~G~ 191 (229)
T MTH00038 140 NRLVLPYQTPIRVLVSSAD-VLHSW-------AVPSLG-----------------VKMDAV---PGRLNQTTFFISRTGL 191 (229)
T ss_pred ceEEEecCeEEEEEEEECC-ccccc-------cccccC-----------------ceeecC---CCceEEEEEEcCCCEE
Confidence 4567899999999999876 33544 443332 124544 6788889999999999
Q ss_pred eeeeecchhhhhc-ceEEEEEEecCC
Q 009283 490 WNIRSENWARQYL-GQQFYLRVYSSA 514 (538)
Q Consensus 490 w~~HCHil~H~d~-GMm~~~~V~~p~ 514 (538)
+.--|--+-.... -|-..++|++++
T Consensus 192 ~~g~Cse~CG~~Hs~M~~~v~vv~~~ 217 (229)
T MTH00038 192 FYGQCSEICGANHSFMPIVIESVPFN 217 (229)
T ss_pred EEEEcccccCcCcCCCeEEEEEeCHH
Confidence 9999998766644 455556666554
No 122
>PLN03148 Blue copper-like protein; Provisional
Probab=36.21 E-value=1.8e+02 Score=26.47 Aligned_cols=33 Identities=12% Similarity=0.197 Sum_probs=26.3
Q ss_pred EEEecCCccceeeecCchhhhhcceeeEEEEecCC
Q 009283 113 VLQVKDQIGSYFYFPSLAFHKAAGGYGGIKIASRP 147 (538)
Q Consensus 113 ~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~ 147 (538)
.+++ +++|+|+|=|- ..|=..||-=.+.|.+.+
T Consensus 89 ~v~L-~~~G~~YFIcg-~ghC~~GmKl~I~V~~~~ 121 (167)
T PLN03148 89 FIPL-NKAKRYYFICG-NGQCFNGMKVTILVHPLP 121 (167)
T ss_pred EEEe-cCCccEEEEcC-CCccccCCEEEEEEcCCC
Confidence 4666 48999999998 467778999999997643
No 123
>PRK10525 cytochrome o ubiquinol oxidase subunit II; Provisional
Probab=35.73 E-value=71 Score=32.26 Aligned_cols=73 Identities=11% Similarity=0.078 Sum_probs=52.4
Q ss_pred EEEccCCcEEEEEEEcCCCCCCCccccCCCceEEeecCCCCCCCCCCCcCCCCCCceeeEEeCCCCEEEEEEEccCccee
Q 009283 411 VMAADFRGFAEVVFENPEDTLQSWHIDGHNFFAVGMDGGEWTPASRLTYNLRDTISRCTVQVYPKSWTAVYVPLDNVGMW 490 (538)
Q Consensus 411 ~~~~~~g~~v~~~l~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adnpG~w 490 (538)
-+.++.|..|++.++..+-+ |+|+|-+.+. ..|.+ ||-...+.|.+|.||.|
T Consensus 152 eL~iP~g~pV~f~lTS~DVi--------HSF~IP~Lg~-----------------K~dam---PG~~n~l~~~a~~~G~Y 203 (315)
T PRK10525 152 EIAFPANVPVYFKVTSNSVM--------NSFFIPRLGS-----------------QIYAM---AGMQTRLHLIANEPGTY 203 (315)
T ss_pred cEEEecCCEEEEEEEEchhh--------hhhhhhhhCC-----------------eeecC---CCceeEEEEEcCCCEEE
Confidence 35689999999999988632 3566654432 23443 67888999999999999
Q ss_pred eeeecchhhh-hcceEEEEEEe
Q 009283 491 NIRSENWARQ-YLGQQFYLRVY 511 (538)
Q Consensus 491 ~~HCHil~H~-d~GMm~~~~V~ 511 (538)
.-.|--.--. +..|...+.+.
T Consensus 204 ~G~CaEyCG~gHs~M~f~v~v~ 225 (315)
T PRK10525 204 DGISASYSGPGFSGMKFKAIAT 225 (315)
T ss_pred EEEChhhcCccccCCeEEEEEE
Confidence 9999876555 34566666665
No 124
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=35.65 E-value=1.5e+02 Score=24.77 Aligned_cols=48 Identities=15% Similarity=0.257 Sum_probs=28.1
Q ss_pred EEEEEEEecCCC-ceEEEEEeCC-eeEEEEEcCeecccceecEEEEcCCCeEEEEEEeC
Q 009283 210 TYRFRISNVGIS-TSINFRIQGH-KMLLVEVEGTHTLQNTYDSLDIHLGQSYSVLVRAD 266 (538)
Q Consensus 210 ~~rlRliN~~~~-~~~~~~l~gh-~~~via~DG~~~~p~~~~~v~l~pgeR~dv~v~~~ 266 (538)
.|+++|+|-+.. ..+.+.++|. .+++.. ....+.|.||+..++-|...
T Consensus 34 ~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~~---------~~~~i~v~~g~~~~~~v~v~ 83 (118)
T PF11614_consen 34 QYTLKLTNKTNQPRTYTISVEGLPGAELQG---------PENTITVPPGETREVPVFVT 83 (118)
T ss_dssp EEEEEEEE-SSS-EEEEEEEES-SS-EE-E---------S--EEEE-TT-EEEEEEEEE
T ss_pred EEEEEEEECCCCCEEEEEEEecCCCeEEEC---------CCcceEECCCCEEEEEEEEE
Confidence 589999999876 3666777764 233211 25678899999887776544
No 125
>PF14392 zf-CCHC_4: Zinc knuckle
Probab=35.26 E-value=61 Score=22.71 Aligned_cols=40 Identities=10% Similarity=-0.007 Sum_probs=29.8
Q ss_pred CCCceee-EEeCCCCEEEEEEEccCcceeeeeecchhhhhc
Q 009283 463 DTISRCT-VQVYPKSWTAVYVPLDNVGMWNIRSENWARQYL 502 (538)
Q Consensus 463 ~p~~rDT-v~vp~~g~~~irf~adnpG~w~~HCHil~H~d~ 502 (538)
.|..+-+ |..+.|+...++++-..-..+=+||..+.|.+.
T Consensus 5 kPL~~~i~v~~~~g~~~~~~v~YE~lp~~C~~C~~~gH~~~ 45 (49)
T PF14392_consen 5 KPLRREIKVKFPEGESFWVKVKYERLPRFCFHCGRIGHSDK 45 (49)
T ss_pred CcccceEEEEeCCCcEEEEEEEECCcChhhcCCCCcCcCHh
Confidence 3444442 334568888889988888899999999999764
No 126
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=34.70 E-value=21 Score=29.16 Aligned_cols=20 Identities=10% Similarity=-0.034 Sum_probs=9.9
Q ss_pred hhhHHHHHHHHHHHhccccC
Q 009283 4 YSSICCLLLVFMLVSCTRGE 23 (538)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~ 23 (538)
+-+.|+|++|+|.+|.++|+
T Consensus 7 llL~l~LA~lLlisSevaa~ 26 (95)
T PF07172_consen 7 LLLGLLLAALLLISSEVAAR 26 (95)
T ss_pred HHHHHHHHHHHHHHhhhhhH
Confidence 33444444555666555544
No 127
>PF02102 Peptidase_M35: Deuterolysin metalloprotease (M35) family; InterPro: IPR001384 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M35 (deuterolysin family, clan MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. Deuterolysin is a microbial zinc-containing metalloprotease that shows some similarity to thermolysin []. The protein is expressed with a possible 19-residue signal sequence, a 155-residue propeptide, and an active peptide of 177 residues []. The latter contains an HEXXH motif towards the C terminus, but the other zinc ligands are as yet undetermined [, ].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 1EB6_A.
Probab=34.29 E-value=13 Score=38.08 Aligned_cols=45 Identities=11% Similarity=0.163 Sum_probs=0.0
Q ss_pred CceeeeccccCCCCCCCCCCCC-CCCCCCCCCeEEEEEEecCCccceeeec
Q 009283 78 PFLISWNGVQQRRNSWQDGVYG-TNCPIPPGKNFTYVLQVKDQIGSYFYFP 127 (538)
Q Consensus 78 ~~siH~HG~~~~~~~~~DG~~~-tq~~i~pG~~~~Y~f~~~~~~Gt~wYH~ 127 (538)
...+-|-|+..+- .++|..- .-..|+||++.+-+|++ +.|||...
T Consensus 77 g~~V~F~Gi~~~~--~~~~L~~d~F~~L~pG~sve~~fDi---A~~~dLs~ 122 (359)
T PF02102_consen 77 GKEVPFTGIRLRY--DTSGLTEDAFQTLAPGESVEVEFDI---AETHDLSS 122 (359)
T ss_dssp ---------------------------------------------------
T ss_pred CcccccccEEEEE--ecCCCCHHHceecCCCCeEEEEEcc---hheeecCC
Confidence 4456777875543 3555432 22569999999999987 66666643
No 128
>PRK10301 hypothetical protein; Provisional
Probab=33.56 E-value=2.1e+02 Score=24.50 Aligned_cols=23 Identities=22% Similarity=0.605 Sum_probs=12.1
Q ss_pred CCEEEEEEEeCC-CCCceeeeccc
Q 009283 64 NDNLIISVFNAL-DEPFLISWNGV 86 (538)
Q Consensus 64 Gd~v~v~~~N~l-~~~~siH~HG~ 86 (538)
+.++.+.+.-.| +-..++.|+.+
T Consensus 85 ~~~~~v~l~~~L~~G~YtV~Wrvv 108 (124)
T PRK10301 85 QKQLIVPLADSLKPGTYTVDWHVV 108 (124)
T ss_pred CcEEEEECCCCCCCccEEEEEEEE
Confidence 334455443333 34567777776
No 129
>cd00918 Der-p2_like Several group 2 allergen proteins belong to the ML domain family. They include Dermatophagoides pteronyssinus, group 2 (Der p 2) and D. farinae, group 2 (Der f 2) allergens. These house dust mites cause heavy atopic diseases such as asthma and dermatitis. Although the allergenic properties of these proteins have been well characterized, their biological function in mites is unknown.
Probab=33.42 E-value=1.7e+02 Score=24.94 Aligned_cols=62 Identities=15% Similarity=0.177 Sum_probs=35.8
Q ss_pred CceEEEecCCEEEEEEEeCCCC---Cceeeecc----ccCC-CCCCCCCCCCCCCCCCCCCeEEEEEEec
Q 009283 56 GPSIEAVTNDNLIISVFNALDE---PFLISWNG----VQQR-RNSWQDGVYGTNCPIPPGKNFTYVLQVK 117 (538)
Q Consensus 56 gP~i~v~~Gd~v~v~~~N~l~~---~~siH~HG----~~~~-~~~~~DG~~~tq~~i~pG~~~~Y~f~~~ 117 (538)
+..=.+++|..+.+.+.=..++ ......|| +..+ +-+..||=-...|||..|+.++|.+..+
T Consensus 19 ~~pC~l~rG~~~~~~~~F~~~~~s~~l~~~v~a~~~gv~iP~p~~~~daC~~l~CPl~~G~~~~y~~~~~ 88 (120)
T cd00918 19 GDYCVIHRGKPLTLEAKFTANQDTAKAKIKITASIDGLEIDVPGIETDGCKYVKCPIKKGQHYDIKYTWN 88 (120)
T ss_pred CCCCEEECCCeEEEEEEEECCCccceEEEEEEEEECCEEcCCCCCCCCCcccEeCCCcCCcEEEEEEeee
Confidence 4445677888887776533332 22333344 3222 1112454211469999999999999874
No 130
>smart00758 PA14 domain in bacterial beta-glucosidases other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins, and bacterial toxins.
Probab=32.79 E-value=2.7e+02 Score=23.70 Aligned_cols=60 Identities=18% Similarity=0.329 Sum_probs=34.4
Q ss_pred EEEecCCEEEEEEEecCCCceEEEEEeCCeeEEEEEcCeec-ccceecEEEEcCCCeEEEEEEeCC
Q 009283 203 FTVDQGKTYRFRISNVGISTSINFRIQGHKMLLVEVEGTHT-LQNTYDSLDIHLGQSYSVLVRADQ 267 (538)
Q Consensus 203 ~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~-~p~~~~~v~l~pgeR~dv~v~~~~ 267 (538)
|++.....|+|.+...+ ..++.|+|.. |+..++..- .+.....+.|..|++|.+.|...+
T Consensus 52 i~~~~~G~y~f~~~~~~---~~~l~Idg~~--vid~~~~~~~~~~~~~~v~l~~g~~~~i~v~y~~ 112 (136)
T smart00758 52 LKPPEDGEYTFSITSDD---GARLWIDGKL--VIDNWGKHEARPSTSSTLYLLAGGTYPIRIEYFE 112 (136)
T ss_pred EECCCCccEEEEEEcCC---cEEEEECCcE--EEcCCccCCCccccceeEEEeCCcEEEEEEEEEe
Confidence 34443445888885433 4567788763 333333221 122344677888888888887653
No 131
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=32.66 E-value=1.8e+02 Score=24.86 Aligned_cols=60 Identities=17% Similarity=0.329 Sum_probs=38.3
Q ss_pred EEEecCCEEEEEEEecCCCceEEEEEeCCeeEEEEEcCeec-------ccceecEEEEcCCCeEEEEEEeCC
Q 009283 203 FTVDQGKTYRFRISNVGISTSINFRIQGHKMLLVEVEGTHT-------LQNTYDSLDIHLGQSYSVLVRADQ 267 (538)
Q Consensus 203 ~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~-------~p~~~~~v~l~pgeR~dv~v~~~~ 267 (538)
|.+..-..|+|++-..+ ..+|.|+|..+ +..++..- .+....++.|..|++|+|.|...+
T Consensus 54 ~~~~~~G~y~f~~~~~d---~~~l~idg~~v--id~~~~~~~~~~~~~~~~~~~~v~l~~g~~y~i~i~y~~ 120 (145)
T PF07691_consen 54 FKPPETGTYTFSLTSDD---GARLWIDGKLV--IDNWGNQGGGFFNSGPSSTSGTVTLEAGGKYPIRIEYFN 120 (145)
T ss_dssp EEESSSEEEEEEEEESS---EEEEEETTEEE--EECSCTTTSTTTTTSBCCEEEEEEE-TT-EEEEEEEEEE
T ss_pred EecccCceEEEEEEecc---cEEEEECCEEE--EcCCccccccccccccceEEEEEEeeCCeeEEEEEEEEE
Confidence 45555557999988433 46677887754 45554432 234567788999999999988654
No 132
>PRK05461 apaG CO2+/MG2+ efflux protein ApaG; Reviewed
Probab=31.79 E-value=1.3e+02 Score=25.99 Aligned_cols=50 Identities=16% Similarity=0.270 Sum_probs=32.7
Q ss_pred EEEEEEEecCCCceEEEEEeCCeeEEEEEcCeecc----cceecEEEEcCCCeEEEE
Q 009283 210 TYRFRISNVGISTSINFRIQGHKMLLVEVEGTHTL----QNTYDSLDIHLGQSYSVL 262 (538)
Q Consensus 210 ~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~~----p~~~~~v~l~pgeR~dv~ 262 (538)
.|++||-|.+.. .+.|-+..+.+...||...+ .+.-..=.|.|||.+...
T Consensus 32 ~Y~ItI~N~~~~---~vQL~~R~W~I~d~~g~~~~V~G~GVVG~qP~L~PGe~F~Y~ 85 (127)
T PRK05461 32 AYTITIENLGRV---PVQLLSRHWLITDANGRVQEVRGEGVVGEQPVLAPGESFEYT 85 (127)
T ss_pred EEEEEEEECCCC---CEEEEeeeEEEEECCCCEEEEECCceecCCceECCCCCeEEe
Confidence 478999998764 35677777777777776431 122344567888876543
No 133
>COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]
Probab=29.83 E-value=39 Score=27.75 Aligned_cols=29 Identities=34% Similarity=0.271 Sum_probs=25.6
Q ss_pred EEEcCcCcCceEEEecCCEEEEEEEeCCC
Q 009283 48 ILINGQFPGPSIEAVTNDNLIISVFNALD 76 (538)
Q Consensus 48 ~~~Ng~~pgP~i~v~~Gd~v~v~~~N~l~ 76 (538)
..+||+.-=|.=.|+.||.|.|++.|.+-
T Consensus 36 V~vNG~~aKpS~~VK~GD~l~i~~~~~~~ 64 (100)
T COG1188 36 VKVNGQRAKPSKEVKVGDILTIRFGNKEF 64 (100)
T ss_pred EEECCEEcccccccCCCCEEEEEeCCcEE
Confidence 57899887889999999999999999854
No 134
>cd00916 Npc2_like Niemann-Pick type C2 (Npc2) is a lysosomal protein in which a mutation in the gene causes a rare form of Niemann-Pick type C disease, an autosomal recessive lipid storage disorder characterized by accumulation of low-density lipoprotein-derived cholesterol in lysosomes. Although Npc2 is known to bind cholesterol, the function of this protein is unknown. These proteins belong to the ML domain family.
Probab=29.35 E-value=2.3e+02 Score=24.18 Aligned_cols=61 Identities=20% Similarity=0.235 Sum_probs=34.3
Q ss_pred ceEEEecCCEEEEEEEeCCCCC-----ceeee--ccccCCCC-CCCCCCC--CCCCCCCCCCeEEEEEEec
Q 009283 57 PSIEAVTNDNLIISVFNALDEP-----FLISW--NGVQQRRN-SWQDGVY--GTNCPIPPGKNFTYVLQVK 117 (538)
Q Consensus 57 P~i~v~~Gd~v~v~~~N~l~~~-----~siH~--HG~~~~~~-~~~DG~~--~tq~~i~pG~~~~Y~f~~~ 117 (538)
..=.+++|+.+.+.+.=..++. +.+|+ -|+..+-. ...|+=. +..|||.+|+.++|.+.++
T Consensus 22 ~PC~l~rG~~~~~~i~F~~~~~~~~~~~~v~~~~~gv~ip~~~~~~daC~~~~~~CPl~~G~~~~y~~~~~ 92 (123)
T cd00916 22 LPCKLKRGSTAKVSIDFTPNFDSTSLKTEVHAILLGVPVPFPLPNPDACKNLGTSCPLSAGEDVTYTLSLP 92 (123)
T ss_pred CCCEEECCCEEEEEEEEEcCcccceeEEEEEEEECCEEecCCCCCCccccCCCCCCCCcCCcEEEEEEeee
Confidence 3445677887777765333222 12332 24433211 1234321 2569999999999999874
No 135
>PRK13254 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=29.15 E-value=60 Score=28.90 Aligned_cols=67 Identities=9% Similarity=0.115 Sum_probs=39.7
Q ss_pred EEEEEEEEEEEecCCCeeeEEEEEcCcC-cCceEEEecCCEEEEEEEeCCCCCceeeeccccCCCCCCCCCCC
Q 009283 27 RFFNWNVTYGDIYPLGVKQQGILINGQF-PGPSIEAVTNDNLIISVFNALDEPFLISWNGVQQRRNSWQDGVY 98 (538)
Q Consensus 27 ~~~~l~~~~~~~~~~G~~~~~~~~Ng~~-pgP~i~v~~Gd~v~v~~~N~l~~~~siH~HG~~~~~~~~~DG~~ 98 (538)
..|-++.++...... ...+.+.+.|.+ +|..-+. .|..++++++.. .....++..|. .++...+|..
T Consensus 34 ~~yf~tpse~~~~~~-~~g~~vrvgG~V~~gSi~~~-~~~~~~F~ltD~-~~~i~V~Y~G~--lPd~F~eg~~ 101 (148)
T PRK13254 34 IVFFYTPSEVAEGEA-PAGRRFRLGGLVEKGSVQRG-DGLTVRFVVTDG-NATVPVVYTGI--LPDLFREGQG 101 (148)
T ss_pred CceeeCHHHHhcCCc-cCCCeEEEeEEEecCcEEeC-CCCEEEEEEEeC-CeEEEEEECCC--CCccccCCCE
Confidence 456666555433222 122334444544 4544443 788889999876 55678888997 5556677754
No 136
>PRK01904 hypothetical protein; Provisional
Probab=28.91 E-value=93 Score=29.66 Aligned_cols=59 Identities=10% Similarity=0.097 Sum_probs=29.3
Q ss_pred CcchhhHHHHHHHHHHHhccccCCCeEEEEEEEEEEEecCCCeeeEEEEEcCcCcC-------ceEEEecC--CEEEEEE
Q 009283 1 MASYSSICCLLLVFMLVSCTRGESPYRFFNWNVTYGDIYPLGVKQQGILINGQFPG-------PSIEAVTN--DNLIISV 71 (538)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~~~~~~~~Ng~~pg-------P~i~v~~G--d~v~v~~ 71 (538)
|++..+++|+++++ +++++.|. + |++... ..+..+||+-+. -+|.+..| ..|.||+
T Consensus 1 MK~~~~~~~~~~l~-~s~~a~A~--t----L~lp~~--------i~lL~vnG~kv~~s~~~~~~~l~L~dgg~hQIv~ry 65 (219)
T PRK01904 1 MKLRKAALAVATLL-TSTASFAG--M----VTTSSN--------IDFLAIDGQKASKSLLKEAKSFNINDTQVHQVVVRV 65 (219)
T ss_pred CchhHHHHHHHHHH-HhHHhhHh--e----eeCCCc--------eEEEEECCEECccccccCCcceEeCCCCceEEEEEE
Confidence 77766666655444 33323332 2 333222 445555655331 24667664 4666666
Q ss_pred EeC
Q 009283 72 FNA 74 (538)
Q Consensus 72 ~N~ 74 (538)
.-.
T Consensus 66 ~~~ 68 (219)
T PRK01904 66 SEI 68 (219)
T ss_pred eec
Confidence 544
No 137
>PRK13203 ureB urease subunit beta; Reviewed
Probab=28.56 E-value=1.4e+02 Score=24.62 Aligned_cols=56 Identities=20% Similarity=0.218 Sum_probs=0.0
Q ss_pred EEEecC-CEEEEEEEeCCCCCcee--eeccccCCCCCCCCCC---------CC-CCCCCCCCCeEEEEE
Q 009283 59 IEAVTN-DNLIISVFNALDEPFLI--SWNGVQQRRNSWQDGV---------YG-TNCPIPPGKNFTYVL 114 (538)
Q Consensus 59 i~v~~G-d~v~v~~~N~l~~~~si--H~HG~~~~~~~~~DG~---------~~-tq~~i~pG~~~~Y~f 114 (538)
|.+++| .++.++|+|.-+.+.-+ |+|=..+......|=. |- |..-..||++.+.+.
T Consensus 13 I~ln~gr~~~~l~V~NtGDRPIQVGSH~HF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~L 81 (102)
T PRK13203 13 IELNAGRETVTLTVANTGDRPIQVGSHYHFFEVNPALSFDREAARGMRLNIPAGTAVRFEPGQTREVEL 81 (102)
T ss_pred EEeCCCCCEEEEEEEeCCCCceEEccccchhhcCcchhccHhhhcCcccccCCCCeEeECCCCeEEEEE
No 138
>PF10989 DUF2808: Protein of unknown function (DUF2808); InterPro: IPR021256 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=28.40 E-value=60 Score=28.74 Aligned_cols=26 Identities=19% Similarity=0.304 Sum_probs=20.7
Q ss_pred eCCCCEEEEEEEc-cCc---ceeeeeecch
Q 009283 472 VYPKSWTAVYVPL-DNV---GMWNIRSENW 497 (538)
Q Consensus 472 vp~~g~~~irf~a-dnp---G~w~~HCHil 497 (538)
|+||..++|.++. .|| |.|.|+|=..
T Consensus 99 V~pG~tv~V~l~~v~NP~~~G~Y~f~v~a~ 128 (146)
T PF10989_consen 99 VPPGTTVTVVLSPVRNPRSGGTYQFNVTAF 128 (146)
T ss_pred CCCCCEEEEEEEeeeCCCCCCeEEEEEEEE
Confidence 4689999999965 466 8999999763
No 139
>TIGR00192 urease_beta urease, beta subunit. In a number of species, including B.subtilis, Synechocystis, and Haemophilus influenzae, urease subunits beta and gamma are encoded as separate polypeptides. In Helicobacter pylori UreA and in the fission yeast Schizosaccharomyces pombe, beta subunit-like sequence follows gamma subunit-like sequence in a single chain; the fission yeast protein contains additional C-terminal regions.
Probab=28.29 E-value=1.4e+02 Score=24.51 Aligned_cols=59 Identities=20% Similarity=0.167 Sum_probs=40.9
Q ss_pred eEEEecC-CEEEEEEEeCCCCCc--eeeeccccCCCCCCCCCC---------C-CCCCCCCCCCeEEEEEEe
Q 009283 58 SIEAVTN-DNLIISVFNALDEPF--LISWNGVQQRRNSWQDGV---------Y-GTNCPIPPGKNFTYVLQV 116 (538)
Q Consensus 58 ~i~v~~G-d~v~v~~~N~l~~~~--siH~HG~~~~~~~~~DG~---------~-~tq~~i~pG~~~~Y~f~~ 116 (538)
.|++++| .++.+.|+|..+.+. .-|+|=..+......|=. | ||..-..||++.+.+...
T Consensus 12 ~I~ln~gr~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV~ 83 (101)
T TIGR00192 12 DITINEGRKTVSVKVKNTGDRPIQVGSHFHFFEVNRALDFDRELAFGMRLDIPSGTAVRFEPGEEKSVELVA 83 (101)
T ss_pred CEEeCCCCcEEEEEEEeCCCcceEEccccchhhcCcceeecHhhhcCcccccCCCCeEeECCCCeEEEEEEE
Confidence 4778888 889999999998764 458887766544333321 2 344557888888877764
No 140
>PRK09918 putative fimbrial chaperone protein; Provisional
Probab=28.06 E-value=2.8e+02 Score=26.60 Aligned_cols=14 Identities=29% Similarity=0.282 Sum_probs=10.6
Q ss_pred EEEcCCCeEEEEEE
Q 009283 251 LDIHLGQSYSVLVR 264 (538)
Q Consensus 251 v~l~pgeR~dv~v~ 264 (538)
..|.|++...+.+.
T Consensus 187 ~~v~P~s~~~~~l~ 200 (230)
T PRK09918 187 PYILPGESLTVAIT 200 (230)
T ss_pred ceECCCceEEEEcc
Confidence 46888888888765
No 141
>PRK13202 ureB urease subunit beta; Reviewed
Probab=27.55 E-value=2.3e+02 Score=23.49 Aligned_cols=64 Identities=13% Similarity=0.098 Sum_probs=40.0
Q ss_pred ceEEEecC--CEEEEEEEecCCCceEEEEEeCCeeEE--------EEEcCeecccceecEEEEcCCCeEEEEEEe
Q 009283 201 NTFTVDQG--KTYRFRISNVGISTSINFRIQGHKMLL--------VEVEGTHTLQNTYDSLDIHLGQSYSVLVRA 265 (538)
Q Consensus 201 p~~~v~~G--~~~rlRliN~~~~~~~~~~l~gh~~~v--------ia~DG~~~~p~~~~~v~l~pgeR~dv~v~~ 265 (538)
..|++.+| ++.++++.|.|.. .+.+.-|=|-+++ -++=|-.++=..-..+..-|||.-+|.+..
T Consensus 11 ~~I~ln~grr~~~~l~V~NtGDR-PIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV~ 84 (104)
T PRK13202 11 GDIEMNAAALSRLQMRIINAGDR-PVQVGSHVHLPQANRALSFDRATAHGYRLDIPAATAVRFEPGIPQIVGLVP 84 (104)
T ss_pred CCEEeCCCCCceEEEEEEeCCCC-ceEEccccchhhcCcceeecHhHhcCcccccCCCCeEEECCCCeEEEEEEE
Confidence 44778888 4789999999985 5555544443332 112222222223467888888888887764
No 142
>PF04379 DUF525: Protein of unknown function (DUF525); InterPro: IPR007474 This domain is found in the bacterial protein ApaG and at the C termini of some F-box proteins (IPR001810 from INTERPRO). F-box proteins contain a carboxy-terminal domain that interacts with protein substrates []. The ApaG domain is ~125 amino acids in length, and is named after the bacterial ApaG protein, of which it forms the core. The Salmonella typhimurium ApaG domain protein, CorD, is involved in Co(2+) resistance and Mg(2+) efflux. Tertiary structures from different ApaG proteins show a fold of several beta-sheets. The ApaG domain may be involved in protein-protein interactions which could be implicated in substrate-specificity [, , ].; PDB: 2F1E_A 1XVS_A 1TZA_A 1XQ4_D.
Probab=27.54 E-value=25 Score=28.41 Aligned_cols=23 Identities=30% Similarity=0.638 Sum_probs=14.7
Q ss_pred CCCCCCCCCCCCCCCeEEEEEEe
Q 009283 94 QDGVYGTNCPIPPGKNFTYVLQV 116 (538)
Q Consensus 94 ~DG~~~tq~~i~pG~~~~Y~f~~ 116 (538)
.+||-|.|.-|.||++|+|.=-.
T Consensus 49 G~GVVG~~P~L~pGe~f~Y~S~~ 71 (90)
T PF04379_consen 49 GEGVVGQQPVLAPGESFEYTSGC 71 (90)
T ss_dssp EESBTTB--EE-TTEEEEEEEEE
T ss_pred CCceEccCceECCCCcEEEcCCC
Confidence 46666677779999988886544
No 143
>MTH00027 COX2 cytochrome c oxidase subunit II; Provisional
Probab=27.53 E-value=1.9e+02 Score=28.50 Aligned_cols=77 Identities=8% Similarity=0.031 Sum_probs=55.1
Q ss_pred EEEEccCCcEEEEEEEcCCCCCCCccccCCCceEEeecCCCCCCCCCCCcCCCCCCceeeEEeCCCCEEEEEEEccCcce
Q 009283 410 SVMAADFRGFAEVVFENPEDTLQSWHIDGHNFFAVGMDGGEWTPASRLTYNLRDTISRCTVQVYPKSWTAVYVPLDNVGM 489 (538)
Q Consensus 410 ~~~~~~~g~~v~~~l~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adnpG~ 489 (538)
+.+.++.|..+++.++..+ -.| +|+|=+.+. .+|.+ ||..-.+.|.++.||.
T Consensus 174 n~lvlP~~~~v~~~ltS~D-ViH-------Sf~vP~lgv-----------------K~Dai---PGr~n~~~~~~~~~G~ 225 (262)
T MTH00027 174 NRLILPVDTNVRVLITAAD-VLH-------SWTVPSLAV-----------------KMDAV---PGRINETGFLIKRPGI 225 (262)
T ss_pred ceEEEeeCcEEEEEEEcCc-ccc-------ceecccccC-----------------cccCC---CCceeeEEEEcCCcEE
Confidence 4567899999999999876 333 455544332 23444 5677788999999999
Q ss_pred eeeeecchhhh-hcceEEEEEEecCC
Q 009283 490 WNIRSENWARQ-YLGQQFYLRVYSSA 514 (538)
Q Consensus 490 w~~HCHil~H~-d~GMm~~~~V~~p~ 514 (538)
+.-.|.-+--. |..|-..++|++++
T Consensus 226 y~g~CsE~CG~~Hs~Mpi~v~vv~~~ 251 (262)
T MTH00027 226 FYGQCSEICGANHSFMPIVVESVSLS 251 (262)
T ss_pred EEEEcchhcCcCcCCCeEEEEEECHH
Confidence 99999986655 56677777777654
No 144
>TIGR01433 CyoA cytochrome o ubiquinol oxidase subunit II. This enzyme catalyzes the oxidation of ubiquinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. Subunit II is responsible for binding and oxidation of the ubiquinone substrate. This sequence is closely related to QoxA, which oxidizes quinol in gram positive bacteria but which is in complex with subunits which utilize cytochromes a in the reduction of molecular oxygen. Slightly more distantly related is subunit II of cytochrome c oxidase which uses cyt. c as the oxidant.
Probab=27.46 E-value=5.5e+02 Score=24.53 Aligned_cols=75 Identities=12% Similarity=0.036 Sum_probs=49.5
Q ss_pred ceEEEecCCEEEEEEEeCCCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCeEEEEEEecCCccceeeecC--chhhhh
Q 009283 57 PSIEAVTNDNLIISVFNALDEPFLISWNGVQQRRNSWQDGVYGTNCPIPPGKNFTYVLQVKDQIGSYFYFPS--LAFHKA 134 (538)
Q Consensus 57 P~i~v~~Gd~v~v~~~N~l~~~~siH~HG~~~~~~~~~DG~~~tq~~i~pG~~~~Y~f~~~~~~Gt~wYH~H--~~~q~~ 134 (538)
..|++..|..|+++++=. . .|| +..++. . +.+.-.-||..-+..|++ +++|+|.=.|- .+.+-
T Consensus 139 nel~lP~g~pV~~~ltS~---D-ViH--SF~VP~---l----~~K~DaiPG~~n~~~~~~-~~~G~y~g~CaE~CG~~H- 203 (226)
T TIGR01433 139 NEIAFPVNTPINFKITSN---S-VMN--SFFIPQ---L----GSQIYAMAGMQTKLHLIA-NEPGVYDGISANYSGPGF- 203 (226)
T ss_pred ceEEEECCCEEEEEEEEC---c-hhh--hhhhhh---c----CCeeecCCCceEEEEEEe-CCCEEEEEEchhhcCcCc-
Confidence 578999999999998876 2 233 332221 1 112234588888888888 68999998887 23322
Q ss_pred cceeeEEEEecC
Q 009283 135 AGGYGGIKIASR 146 (538)
Q Consensus 135 ~Gl~G~liV~~~ 146 (538)
..|.+-++|.++
T Consensus 204 a~M~~~V~v~~~ 215 (226)
T TIGR01433 204 SGMKFKAIATDR 215 (226)
T ss_pred cCCeEEEEEECH
Confidence 347777777764
No 145
>PRK13159 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=25.94 E-value=1.4e+02 Score=26.75 Aligned_cols=69 Identities=10% Similarity=0.116 Sum_probs=42.7
Q ss_pred eEEEEEEEEEEEecCCCeeeEEEEEcCc-CcCceEEEecCCEEEEEEEeCCCCCceeeeccccCCCCCCCCCCC
Q 009283 26 YRFFNWNVTYGDIYPLGVKQQGILINGQ-FPGPSIEAVTNDNLIISVFNALDEPFLISWNGVQQRRNSWQDGVY 98 (538)
Q Consensus 26 ~~~~~l~~~~~~~~~~G~~~~~~~~Ng~-~pgP~i~v~~Gd~v~v~~~N~l~~~~siH~HG~~~~~~~~~DG~~ 98 (538)
...|-++.++...... ...+.+...|. .+|-..|-..+-.|+++++- ......++..|+ .++.+.+|..
T Consensus 33 n~~yF~tpsEv~~~~~-~~~~~~RlGG~V~~GSv~r~~~~~~v~F~vtD-~~~~v~V~Y~Gi--lPDlFrEGqg 102 (155)
T PRK13159 33 NMSYLFTPSQVRAGAA-AGYQQFRLGGMVKAGSIQRAADSLKVSFTVID-KNAATQVEYTGI--LPDLFRDNQS 102 (155)
T ss_pred CceEEECHHHHhcCCc-ccCCeEEEccEEecCcEEEcCCCcEEEEEEEc-CCcEEEEEEccC--CCccccCCCe
Confidence 4577777777544322 12255666676 46777663333377888873 355678888998 5566677754
No 146
>cd00407 Urease_beta Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, archaea, fungi and plants. Their primary role is to allow the use of external and internally-generated urea as a nitrogen source. The enzyme consists of three subunits, alpha, beta and gamma, which can exist as separate proteins or can be fused on a single protein chain. The alpha-beta-gamma heterotrimer forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=25.74 E-value=1.8e+02 Score=24.00 Aligned_cols=56 Identities=20% Similarity=0.198 Sum_probs=0.0
Q ss_pred EEEecC-CEEEEEEEeCCCCCcee--eeccccCCCCCCCCCC---------CC-CCCCCCCCCeEEEEE
Q 009283 59 IEAVTN-DNLIISVFNALDEPFLI--SWNGVQQRRNSWQDGV---------YG-TNCPIPPGKNFTYVL 114 (538)
Q Consensus 59 i~v~~G-d~v~v~~~N~l~~~~si--H~HG~~~~~~~~~DG~---------~~-tq~~i~pG~~~~Y~f 114 (538)
|++++| .++.++|+|.-+.+.-+ |+|=..+......|=. |- |..-..||++.+.+.
T Consensus 13 I~lN~gr~~~~l~V~NtGDRpIQVGSH~HF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~L 81 (101)
T cd00407 13 IELNAGREAVTLKVKNTGDRPIQVGSHYHFFEVNPALKFDREKAYGMRLDIPAGTAVRFEPGEEKEVEL 81 (101)
T ss_pred eEeCCCCCEEEEEEEeCCCcceEEccccchhhcCccccccHHHcccceecccCCCeEEECCCCeEEEEE
No 147
>MTH00154 COX2 cytochrome c oxidase subunit II; Provisional
Probab=24.97 E-value=2.6e+02 Score=26.83 Aligned_cols=77 Identities=5% Similarity=0.091 Sum_probs=54.2
Q ss_pred EEEEccCCcEEEEEEEcCCCCCCCccccCCCceEEeecCCCCCCCCCCCcCCCCCCceeeEEeCCCCEEEEEEEccCcce
Q 009283 410 SVMAADFRGFAEVVFENPEDTLQSWHIDGHNFFAVGMDGGEWTPASRLTYNLRDTISRCTVQVYPKSWTAVYVPLDNVGM 489 (538)
Q Consensus 410 ~~~~~~~g~~v~~~l~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adnpG~ 489 (538)
+.+.++.|+.+++.++..+ -.| .|+|=+.+ ..+|.+ ||....+.|.++.||.
T Consensus 140 n~l~lP~~~~v~~~~tS~D-ViH-------sf~vp~l~-----------------~k~dav---PG~~~~~~~~~~~~G~ 191 (227)
T MTH00154 140 NRLVLPMNTQIRILITAAD-VIH-------SWTVPSLG-----------------VKVDAV---PGRLNQLNFLINRPGL 191 (227)
T ss_pred ceEEEecCCEEEEEEEcCc-hhh-------heeccccC-----------------CeeecC---CCceEEEEEEEcCceE
Confidence 4567899999999999876 334 44443332 124544 6788889999999999
Q ss_pred eeeeecchhhh-hcceEEEEEEecCC
Q 009283 490 WNIRSENWARQ-YLGQQFYLRVYSSA 514 (538)
Q Consensus 490 w~~HCHil~H~-d~GMm~~~~V~~p~ 514 (538)
+.--|--+--. |.-|-..++|++++
T Consensus 192 y~g~Cse~CG~~H~~M~~~v~vv~~~ 217 (227)
T MTH00154 192 FFGQCSEICGANHSFMPIVIESVSVN 217 (227)
T ss_pred EEEEeechhCcCccCCeEEEEEeCHH
Confidence 99999876555 44556666666654
No 148
>PF10989 DUF2808: Protein of unknown function (DUF2808); InterPro: IPR021256 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=24.04 E-value=92 Score=27.52 Aligned_cols=28 Identities=32% Similarity=0.589 Sum_probs=22.4
Q ss_pred CCCCCCCCeEEEEEEe---cCCccceeeecC
Q 009283 101 NCPIPPGKNFTYVLQV---KDQIGSYFYFPS 128 (538)
Q Consensus 101 q~~i~pG~~~~Y~f~~---~~~~Gt~wYH~H 128 (538)
..||+||++++-.+.. |...|+|.|++-
T Consensus 96 ~~PV~pG~tv~V~l~~v~NP~~~G~Y~f~v~ 126 (146)
T PF10989_consen 96 DEPVPPGTTVTVVLSPVRNPRSGGTYQFNVT 126 (146)
T ss_pred CCCCCCCCEEEEEEEeeeCCCCCCeEEEEEE
Confidence 3789999999999943 344799999986
No 149
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=23.94 E-value=3.8e+02 Score=21.44 Aligned_cols=59 Identities=22% Similarity=0.213 Sum_probs=37.0
Q ss_pred EEecCCEE--EEEEEecCCCceEEEEEeCC-----eeEEEEEcCeecccceecEEEEcCCCeEEEEEEeC-C-CCcceEE
Q 009283 204 TVDQGKTY--RFRISNVGISTSINFRIQGH-----KMLLVEVEGTHTLQNTYDSLDIHLGQSYSVLVRAD-Q-PPQGYYI 274 (538)
Q Consensus 204 ~v~~G~~~--rlRliN~~~~~~~~~~l~gh-----~~~via~DG~~~~p~~~~~v~l~pgeR~dv~v~~~-~-~~g~y~i 274 (538)
.+..|++| .+.|.|.|.. ..+|++... .|.+ +| ..-.|+||+..++.|.+. . +.|.|.-
T Consensus 15 ~v~~g~~~~~~v~l~N~s~~-p~~f~v~~~~~~~~~~~v--------~~---~~g~l~PG~~~~~~V~~~~~~~~g~~~~ 82 (102)
T PF14874_consen 15 NVFVGQTYSRTVTLTNTSSI-PARFRVRQPESLSSFFSV--------EP---PSGFLAPGESVELEVTFSPTKPLGDYEG 82 (102)
T ss_pred EEccCCEEEEEEEEEECCCC-CEEEEEEeCCcCCCCEEE--------EC---CCCEECCCCEEEEEEEEEeCCCCceEEE
Confidence 35567777 5899999976 455555321 1221 12 223599999999999887 2 4566543
No 150
>MTH00129 COX2 cytochrome c oxidase subunit II; Provisional
Probab=23.93 E-value=6.5e+02 Score=24.12 Aligned_cols=76 Identities=9% Similarity=-0.024 Sum_probs=47.1
Q ss_pred ceEEEecCCEEEEEEEeCCCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCeEEEEEEecCCccceeeecCc-hhhhhc
Q 009283 57 PSIEAVTNDNLIISVFNALDEPFLISWNGVQQRRNSWQDGVYGTNCPIPPGKNFTYVLQVKDQIGSYFYFPSL-AFHKAA 135 (538)
Q Consensus 57 P~i~v~~Gd~v~v~~~N~l~~~~siH~HG~~~~~~~~~DG~~~tq~~i~pG~~~~Y~f~~~~~~Gt~wYH~H~-~~q~~~ 135 (538)
..+.+..|..|++.++=. . .+ |+..++. -|+ +...-||..-...|.+ +++|+|+-.|.. -+....
T Consensus 140 n~lvlP~~~~v~~~~tS~---D-Vi--Hsf~ip~----~~~---k~da~PG~~~~~~~~~-~~~G~~~g~C~e~CG~~H~ 205 (230)
T MTH00129 140 HRMVVPVESPIRVLVSAE---D-VL--HSWAVPA----LGV---KMDAVPGRLNQTAFIA-SRPGVFYGQCSEICGANHS 205 (230)
T ss_pred ceEEEecCcEEEEEEEeC---c-cc--cceeccc----cCC---ccccCCCceEEEEEEe-CCceEEEEEChhhcccccc
Confidence 357777777777777655 1 22 4443321 111 2335689998889988 589999999983 122234
Q ss_pred ceeeEEEEecC
Q 009283 136 GGYGGIKIASR 146 (538)
Q Consensus 136 Gl~G~liV~~~ 146 (538)
.|.+.+.|.++
T Consensus 206 ~M~~~v~vv~~ 216 (230)
T MTH00129 206 FMPIVVEAVPL 216 (230)
T ss_pred CCcEEEEEECH
Confidence 56666666653
No 151
>TIGR03656 IsdC heme uptake protein IsdC. Isd proteins are iron-regulated surface proteins found in Bacillus, Staphylococcus and Listeria species and are responsible for heme scavenging from hemoproteins. The IsdC protein consists of an N-terminal hydrophobic signal sequence, a central NEAT (NEAr Transporter, pfam05031) domain which confers the ability to bind heme and a C-terminal SrtB processing signal which targets the protein to the cell wall. IsdC is believed to make a direct contact with, and transfer heme to, the heme-binding component (IsdE) of an ABC transporter in the cytoplasmic membrane, and to receive heme from other NEAT-containing heme-binding proteins also localized in the cell wall.
Probab=23.69 E-value=4.5e+02 Score=24.99 Aligned_cols=100 Identities=15% Similarity=0.070 Sum_probs=45.3
Q ss_pred cchhhHHHHHHHHHHHhcc--ccCCCeEEEEEEEEEEEecCCCeeeEEEEEcCcCcCc-eEEEecCCEE-EEEEEeCCCC
Q 009283 2 ASYSSICCLLLVFMLVSCT--RGESPYRFFNWNVTYGDIYPLGVKQQGILINGQFPGP-SIEAVTNDNL-IISVFNALDE 77 (538)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~G~~~~~~~~Ng~~pgP-~i~v~~Gd~v-~v~~~N~l~~ 77 (538)
+.+++++|+|.++++.+.. ++.-+...|++...--...= -...+ -|+-+-.| ++.++-|... .+++ |+...
T Consensus 5 ~~~~~~~~~~~f~~~~~~~~~~~~L~DGtYsV~fkVlK~~t--de~Sm--mn~Y~~kPAkv~VknGK~~Vt~Tl-~~S~w 79 (217)
T TIGR03656 5 LVFAFFTTILAFIILSAGFSNSANLADGTYTINYTVYKADN--DSASM--ANDYFEKPAKLIVKNGKMTVQITV-NHSHW 79 (217)
T ss_pred hhHHHHHHHHHHhcccccccccccccCceEEEEEEEEeCCC--Cchhh--HHhhccCCcEEEEECCEEEEEEEE-ecccc
Confidence 4556667766655543222 23333445665553221111 11111 33434345 6777655443 3333 33333
Q ss_pred CceeeeccccCCCCCCCCCCCC-CCCCCCCCCeEEEEEEec
Q 009283 78 PFLISWNGVQQRRNSWQDGVYG-TNCPIPPGKNFTYVLQVK 117 (538)
Q Consensus 78 ~~siH~HG~~~~~~~~~DG~~~-tq~~i~pG~~~~Y~f~~~ 117 (538)
-+.+..-| +|+-. +.. ..+.+.+++|.+.
T Consensus 80 ik~fkve~---------~gv~Vvsed--~~~ntRtV~FeV~ 109 (217)
T TIGR03656 80 ITGFKVEG---------NGVNVVSKN--EAADKRTVEFPVS 109 (217)
T ss_pred eEEEEEcC---------CCcEEEecc--CCCCeEEEEEEec
Confidence 34443322 22222 111 3467889999985
No 152
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=22.60 E-value=87 Score=22.97 Aligned_cols=17 Identities=24% Similarity=0.368 Sum_probs=10.2
Q ss_pred cchhhHHHHHHHHHHHh
Q 009283 2 ASYSSICCLLLVFMLVS 18 (538)
Q Consensus 2 ~~~~~~~~~~~~~~~~~ 18 (538)
+.+++|||+.|++...+
T Consensus 5 l~vialLC~aLva~vQ~ 21 (65)
T PF10731_consen 5 LIVIALLCVALVAIVQS 21 (65)
T ss_pred hhHHHHHHHHHHHHHhc
Confidence 45667777666654433
No 153
>PF06255 DUF1020: Protein of unknown function (DUF1020); InterPro: IPR008106 The pathogenic neisseriae are a small group of virulent bacteria that initiate infection at the human host mucosal membranes []. They are Gram-negative cocci and usually exist in pairs. Neisseria gonorrhoeae is passed through sexual transmission and can cause renal failure in extreme cases. The more extreme Neisseria meningitidis is a usually commensal nasopharynx microbe that causes meningococcemia and acute bacterial meningitis, especially in young children and teenagers []. There are several serogroups, of which types A, B and C are the most virulent. Despite recent advances in vaccinology, this pathogen is highly important to research and still poorly understood []. N. meningitidis has many virulence factors, its major determinant being a antiphagocytic polysaccharide capsule that allows the bacterium to evade the host immune response []. Vaccines based on this polysaccharide have proven effective against serogroups A and C meningococci, but serogroup Bstill does not possess an efficient vaccine, and causes the most severe form of meningitis []. It is believed that a conjugate protein vaccine derived from published neisserial genome sequences, rather than one based on polysaccharide, will be the best way of eradicating this disease []. The focus on novel vaccine targets for N. meningitidis has shifted to the adhesins the bacterium secretes to colonise host mucosal epithelia before a serious infection takes hold []. Interaction of these adhesion moleculeswith their cognate host receptors allows bacterial entry to the epithelium,intracellular transport across the host cell, and exit into the bloodstreamon the other side []. Following publication of the complete genome sequence of an N. meningitidis serogroup B strain [], several new adhesins have been identified, including one identical to MafB from N. gonorrhoreae.
Probab=22.35 E-value=1.7e+02 Score=28.91 Aligned_cols=37 Identities=30% Similarity=0.556 Sum_probs=29.8
Q ss_pred eeeccccCCCCCCCCCCCCCCCCCCCCCeEEEEEEec
Q 009283 81 ISWNGVQQRRNSWQDGVYGTNCPIPPGKNFTYVLQVK 117 (538)
Q Consensus 81 iH~HG~~~~~~~~~DG~~~tq~~i~pG~~~~Y~f~~~ 117 (538)
|||-|...++....||.-|.--|-+-|.+-.|.|.+.
T Consensus 101 l~w~G~EhHPaDgYDGPQGGgYP~P~GARDiYSY~vK 137 (327)
T PF06255_consen 101 LHWTGSEHHPADGYDGPQGGGYPKPKGARDIYSYHVK 137 (327)
T ss_pred EeccccccCccccCCCCCCCCCCCCCCccceeEEEec
Confidence 9999999988777787655446677788999999884
No 154
>KOG4387 consensus Ornithine decarboxylase antizyme [Amino acid transport and metabolism]
Probab=22.31 E-value=35 Score=31.00 Aligned_cols=29 Identities=17% Similarity=0.294 Sum_probs=24.8
Q ss_pred EEEecCCEEEEEEEeCCCCCceeeecccc
Q 009283 59 IEAVTNDNLIISVFNALDEPFLISWNGVQ 87 (538)
Q Consensus 59 i~v~~Gd~v~v~~~N~l~~~~siH~HG~~ 87 (538)
.....++++.+++.|++...+++||||+-
T Consensus 71 ~~~n~~~~~~~d~~~rlt~~~s~~W~~vl 99 (191)
T KOG4387|consen 71 LPGNDRKPGILDFQERLTVAKSMNWHGVL 99 (191)
T ss_pred ccccCCCCcEEeccchhheeeecccceEE
Confidence 34566788999999999999999999983
No 155
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=21.73 E-value=5.2e+02 Score=22.25 Aligned_cols=96 Identities=11% Similarity=0.050 Sum_probs=58.8
Q ss_pred eEEEEccC-CcEEEEEEEcCCCCCCCccccCCCceEEeecCCCCCC--------CCCCCcCCC-C-CCceeeEEeCCCCE
Q 009283 409 TSVMAADF-RGFAEVVFENPEDTLQSWHIDGHNFFAVGMDGGEWTP--------ASRLTYNLR-D-TISRCTVQVYPKSW 477 (538)
Q Consensus 409 ~~~~~~~~-g~~v~~~l~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~--------~~~~~~~~~-~-p~~rDTv~vp~~g~ 477 (538)
..-+.++. ++.+.++|.|.+..+. =.=||.+ ||... +..+. ....+|=.. + .+..-|=.|.+|+.
T Consensus 15 ~~~i~V~a~~k~vtv~l~h~G~lpk--~~MgHN~-Vl~k~-~d~~~v~~~g~~ag~~~~Yvp~~d~~ViAhTkliggGes 90 (125)
T TIGR02695 15 TKSISVPKSCKEFTVNLKHTGKLPK--AVMGHNW-VLAKS-ADMQAVATDGMSAGADNNYVKPGDARVIAHTKVIGGGEK 90 (125)
T ss_pred ccEEEEcCCCcEEEEEEecCCcCch--hccCccE-EEecc-ccHHHHHHHHHhcccccCccCCCCcceEEEccccCCCce
Confidence 44567776 5899999999864321 1113333 44432 11110 001112111 1 34566778889999
Q ss_pred EEEEEEcc--Ccce-eeeeecchhhhhcceEEEEE
Q 009283 478 TAVYVPLD--NVGM-WNIRSENWARQYLGQQFYLR 509 (538)
Q Consensus 478 ~~irf~ad--npG~-w~~HCHil~H~d~GMm~~~~ 509 (538)
..|.|.+. .+|. |.|=|-.--|+. .|-..++
T Consensus 91 ~svtF~~~~l~~g~~Y~f~CSFPGH~~-~MkG~l~ 124 (125)
T TIGR02695 91 TSVTFDVSKLSAGEDYTFFCSFPGHWA-MMRGTVK 124 (125)
T ss_pred EEEEEECCCCCCCCcceEEEcCCCcHH-hceEEEe
Confidence 99999985 4785 999999999996 5666554
No 156
>PF10794 DUF2606: Protein of unknown function (DUF2606); InterPro: IPR019730 This entry represents bacterial proteins with unknown function.
Probab=21.17 E-value=2.1e+02 Score=24.35 Aligned_cols=34 Identities=18% Similarity=0.147 Sum_probs=22.9
Q ss_pred EEEEEEEEEEEecC-CCeeeEEEEEcCcCcCceEE
Q 009283 27 RFFNWNVTYGDIYP-LGVKQQGILINGQFPGPSIE 60 (538)
Q Consensus 27 ~~~~l~~~~~~~~~-~G~~~~~~~~Ng~~pgP~i~ 60 (538)
..++|.++.++-.| +|++..+.-.-..-|.|.++
T Consensus 42 ~pVT~hVen~e~~pi~~~ev~lmKa~ds~~qPs~e 76 (131)
T PF10794_consen 42 NPVTFHVENAEGQPIKDFEVTLMKAADSDPQPSKE 76 (131)
T ss_pred ccEEEEEecCCCCcccceEEEEEeccccCCCCchh
Confidence 36899999988765 47666665544566666543
No 157
>MTH00080 COX2 cytochrome c oxidase subunit II; Provisional
Probab=20.99 E-value=3.6e+02 Score=25.94 Aligned_cols=77 Identities=4% Similarity=-0.023 Sum_probs=54.9
Q ss_pred EEEEccCCcEEEEEEEcCCCCCCCccccCCCceEEeecCCCCCCCCCCCcCCCCCCceeeEEeCCCCEEEEEEEccCcce
Q 009283 410 SVMAADFRGFAEVVFENPEDTLQSWHIDGHNFFAVGMDGGEWTPASRLTYNLRDTISRCTVQVYPKSWTAVYVPLDNVGM 489 (538)
Q Consensus 410 ~~~~~~~g~~v~~~l~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adnpG~ 489 (538)
+.+.+|.|+.+++.++..+ -.| +|+|=+.+ ..+|.+ ||-...+.|.++.||.
T Consensus 143 n~l~lP~~~~v~~~itS~D-ViH-------Sf~vP~lg-----------------~K~Dav---PGr~n~~~~~~~~~G~ 194 (231)
T MTH00080 143 NRCVLPCDTNIRFCITSSD-VIH-------SWALPSLS-----------------IKMDAM---SGILSTLCYSFPMPGV 194 (231)
T ss_pred CceEeecCcEEEEEEEeCc-ccc-------cccccccC-----------------ceeecc---CCceEEEEEEEcCceE
Confidence 4456899999999999876 334 44443332 134554 5777888999999999
Q ss_pred eeeeecchhhh-hcceEEEEEEecCC
Q 009283 490 WNIRSENWARQ-YLGQQFYLRVYSSA 514 (538)
Q Consensus 490 w~~HCHil~H~-d~GMm~~~~V~~p~ 514 (538)
+.--|--+--. |..|-..++|++++
T Consensus 195 y~g~CsE~CG~~Hs~M~~~v~vv~~~ 220 (231)
T MTH00080 195 FYGQCSEICGANHSFMPIAVEVTLLD 220 (231)
T ss_pred EEEEehhhcCcCccCCEEEEEEECHH
Confidence 99999875544 45677777777664
No 158
>TIGR00192 urease_beta urease, beta subunit. In a number of species, including B.subtilis, Synechocystis, and Haemophilus influenzae, urease subunits beta and gamma are encoded as separate polypeptides. In Helicobacter pylori UreA and in the fission yeast Schizosaccharomyces pombe, beta subunit-like sequence follows gamma subunit-like sequence in a single chain; the fission yeast protein contains additional C-terminal regions.
Probab=20.48 E-value=3.9e+02 Score=22.04 Aligned_cols=64 Identities=20% Similarity=0.193 Sum_probs=39.4
Q ss_pred ceEEEecC-CEEEEEEEecCCCceEEEEEeCCeeEE--------EEEcCeecccceecEEEEcCCCeEEEEEEe
Q 009283 201 NTFTVDQG-KTYRFRISNVGISTSINFRIQGHKMLL--------VEVEGTHTLQNTYDSLDIHLGQSYSVLVRA 265 (538)
Q Consensus 201 p~~~v~~G-~~~rlRliN~~~~~~~~~~l~gh~~~v--------ia~DG~~~~p~~~~~v~l~pgeR~dv~v~~ 265 (538)
..|++.+| ++..+.+.|.|.. .+.+.-|=|-+++ -++=|-.++=..-..+..-|||.-+|.+..
T Consensus 11 ~~I~ln~gr~~~~l~V~NtGDR-PIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV~ 83 (101)
T TIGR00192 11 GDITINEGRKTVSVKVKNTGDR-PIQVGSHFHFFEVNRALDFDRELAFGMRLDIPSGTAVRFEPGEEKSVELVA 83 (101)
T ss_pred CCEEeCCCCcEEEEEEEeCCCc-ceEEccccchhhcCcceeecHhhhcCcccccCCCCeEeECCCCeEEEEEEE
Confidence 34667777 5668999999985 5555444443332 122222232223467888999999888764
No 159
>TIGR02988 YaaA_near_RecF S4 domain protein YaaA. This small protein has a single S4 domain (pfam01479), as do bacterial ribosomal protein S4, some pseudouridine synthases, tyrosyl-tRNA synthetases. The S4 domain may bind RNA. Members of this protein family are found almost exclusively in the Firmicutes, and almost invariably just a few nucleotides upstream of the gene for the DNA replication and repair protein RecF. The few members of this family that are not near recF are found instead near dnaA and/or dnaN, the usual neighbors of recF, near the origin of replication. The conserved location suggests a possible role in replication in the Firmicutes lineage.
Probab=20.18 E-value=62 Score=23.49 Aligned_cols=25 Identities=16% Similarity=0.275 Sum_probs=19.9
Q ss_pred CeEEEcCCCCCCceEEEecCCEEEE
Q 009283 189 DGLVINGRGSNANTFTVDQGKTYRF 213 (538)
Q Consensus 189 ~~~liNG~~~~~p~~~v~~G~~~rl 213 (538)
..++|||+....+...+++|+.+.+
T Consensus 34 G~V~VNg~~~~~~~~~l~~Gd~v~i 58 (59)
T TIGR02988 34 NEVLVNGELENRRGKKLYPGDVIEI 58 (59)
T ss_pred CCEEECCEEccCCCCCCCCCCEEEe
Confidence 3689999975467889999998764
No 160
>PRK11372 lysozyme inhibitor; Provisional
Probab=20.04 E-value=5.2e+02 Score=21.59 Aligned_cols=9 Identities=11% Similarity=0.021 Sum_probs=4.3
Q ss_pred CcchhhHHH
Q 009283 1 MASYSSICC 9 (538)
Q Consensus 1 ~~~~~~~~~ 9 (538)
|.|+.+|+.
T Consensus 1 ~~mk~ll~~ 9 (109)
T PRK11372 1 MSMKKLLII 9 (109)
T ss_pred CchHHHHHH
Confidence 455554433
Done!