Query 009284
Match_columns 538
No_of_seqs 210 out of 1209
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 23:01:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009284.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009284hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3saf_A Exosome component 10; e 99.9 1.2E-23 4.1E-28 224.5 18.7 199 311-526 105-306 (428)
2 2e6m_A Werner syndrome ATP-dep 99.9 7.9E-22 2.7E-26 189.6 17.2 173 314-497 15-199 (208)
3 1vk0_A Hypothetical protein; h 99.9 1E-21 3.5E-26 190.8 13.2 164 318-491 23-205 (206)
4 2hbj_A Exosome complex exonucl 99.8 2.4E-20 8.2E-25 198.1 17.7 172 313-497 84-258 (410)
5 1yt3_A Ribonuclease D, RNAse D 99.8 1.2E-19 4.1E-24 190.2 18.3 169 315-497 2-174 (375)
6 3cym_A Uncharacterized protein 99.7 8E-17 2.8E-21 172.5 14.9 170 315-497 17-191 (440)
7 2kfn_A Klenow fragment of DNA 99.6 5.2E-15 1.8E-19 164.1 19.5 173 314-495 5-195 (605)
8 3pv8_A DNA polymerase I; DNA p 99.5 3.7E-14 1.3E-18 156.9 10.5 148 336-497 30-185 (592)
9 1x9m_A DNA polymerase; DNA plo 99.1 2.3E-10 8E-15 128.9 9.4 148 337-498 1-188 (698)
10 1bgx_T TAQ DNA polymerase; DNA 98.8 2.9E-09 9.9E-14 122.1 5.4 173 251-494 244-421 (832)
11 4dfk_A DNA polymerase I, therm 98.5 1.4E-07 4.9E-12 103.4 8.2 116 336-495 11-131 (540)
12 3v9w_A Ribonuclease T; DEDD nu 97.9 4.7E-05 1.6E-09 73.9 10.1 158 319-497 21-225 (235)
13 2p1j_A POLIII, DNA polymerase 96.4 0.035 1.2E-06 51.7 12.6 90 384-495 82-178 (186)
14 1wlj_A Interferon stimulated g 96.4 0.013 4.4E-07 54.9 9.6 92 384-497 73-173 (189)
15 2f96_A Ribonuclease T; RNAse, 94.9 0.2 6.9E-06 47.8 11.5 84 396-495 126-215 (224)
16 2gui_A DNA polymerase III epsi 94.1 0.88 3E-05 42.1 13.9 94 384-494 85-186 (194)
17 1y97_A Three prime repair exon 94.1 0.21 7.2E-06 47.9 9.8 93 383-493 98-210 (238)
18 3mxm_B Three prime repair exon 93.2 0.22 7.5E-06 48.6 8.2 94 383-493 103-215 (242)
19 2qxf_A Exodeoxyribonuclease I; 86.6 2.6 8.7E-05 45.5 10.1 93 383-492 83-200 (482)
20 3u3y_B Three prime repair exon 84.4 1.4 4.9E-05 44.9 6.5 94 383-493 103-215 (314)
21 1qht_A Protein (DNA polymerase 64.5 51 0.0017 37.3 12.9 154 334-490 134-327 (775)
22 1w0h_A 3'-5' exonuclease ERI1; 64.4 8.5 0.00029 35.5 5.5 95 384-495 88-197 (204)
23 1zbh_A 3'-5' exonuclease ERI1; 54.0 36 0.0012 33.7 8.4 96 384-497 156-267 (299)
24 1s5j_A DNA polymerase I; repli 51.4 1.4E+02 0.0049 34.1 13.7 99 383-486 259-386 (847)
25 3g5g_A Regulatory protein; tra 50.6 12 0.00043 30.8 3.6 47 113-159 41-87 (99)
26 2igi_A Oligoribonuclease; RNAs 47.9 53 0.0018 29.4 7.8 90 384-493 84-177 (180)
27 1rxw_A Flap structure-specific 47.7 6.8 0.00023 39.8 1.8 90 197-289 211-312 (336)
28 2k9q_A Uncharacterized protein 46.8 18 0.0006 27.8 3.8 54 104-159 8-61 (77)
29 3omt_A Uncharacterized protein 45.0 22 0.00075 26.8 4.0 54 104-159 14-67 (73)
30 1zbu_A ERI-1 homolog, 3'-5' ex 42.9 59 0.002 33.2 8.0 95 384-496 206-316 (349)
31 3qq6_A HTH-type transcriptiona 42.1 22 0.00075 27.7 3.7 59 98-159 11-70 (78)
32 2p58_C Putative type III secre 41.7 78 0.0027 27.4 7.1 43 185-238 29-71 (116)
33 3kz3_A Repressor protein CI; f 41.3 29 0.00099 26.8 4.3 50 113-162 25-74 (80)
34 2xi8_A Putative transcription 41.0 25 0.00087 25.4 3.7 46 114-159 15-60 (66)
35 2kpj_A SOS-response transcript 39.4 31 0.0011 27.5 4.3 47 113-159 22-68 (94)
36 1y7y_A C.AHDI; helix-turn-heli 39.4 34 0.0012 25.4 4.3 47 113-159 26-72 (74)
37 3s8q_A R-M controller protein; 38.4 31 0.0011 26.5 4.1 47 113-159 24-70 (82)
38 2ofy_A Putative XRE-family tra 38.2 30 0.001 26.9 4.0 56 104-160 19-75 (86)
39 3bs3_A Putative DNA-binding pr 37.9 28 0.00096 26.1 3.6 46 114-159 24-69 (76)
40 1x57_A Endothelial differentia 36.7 38 0.0013 26.8 4.4 46 114-159 27-72 (91)
41 2r1j_L Repressor protein C2; p 36.6 33 0.0011 25.0 3.7 46 114-159 19-64 (68)
42 2ewt_A BLDD, putative DNA-bind 35.2 37 0.0013 25.1 3.9 47 113-159 21-69 (71)
43 3u3w_A Transcriptional activat 33.8 96 0.0033 29.1 7.5 92 103-204 10-101 (293)
44 2a6c_A Helix-turn-helix motif; 33.7 45 0.0015 26.0 4.3 61 99-159 16-78 (83)
45 2uwj_G Type III export protein 33.3 81 0.0028 27.3 5.9 43 185-238 28-70 (115)
46 3t76_A VANU, transcriptional r 32.9 41 0.0014 27.3 4.0 55 102-159 28-82 (88)
47 2b5a_A C.BCLI; helix-turn-heli 32.7 38 0.0013 25.4 3.6 47 113-159 23-69 (77)
48 2wiu_B HTH-type transcriptiona 31.7 29 0.00098 27.0 2.8 48 113-160 25-72 (88)
49 1lmb_3 Protein (lambda repress 31.3 59 0.002 25.4 4.7 49 113-161 30-78 (92)
50 3b7h_A Prophage LP1 protein 11 31.1 41 0.0014 25.3 3.5 47 113-159 20-67 (78)
51 1adr_A P22 C2 repressor; trans 30.7 44 0.0015 24.9 3.7 46 114-159 19-64 (76)
52 3f6w_A XRE-family like protein 29.4 47 0.0016 25.5 3.7 50 113-162 27-76 (83)
53 1r69_A Repressor protein CI; g 29.4 41 0.0014 24.5 3.2 45 114-159 15-59 (69)
54 3mlf_A Transcriptional regulat 28.6 48 0.0016 27.7 3.9 55 103-159 28-82 (111)
55 3op9_A PLI0006 protein; struct 28.5 45 0.0015 27.5 3.6 55 104-160 15-69 (114)
56 3vk0_A NHTF, transcriptional r 27.1 55 0.0019 27.2 3.9 62 98-159 18-80 (114)
57 3ivp_A Putative transposon-rel 26.0 55 0.0019 27.5 3.8 55 103-159 17-71 (126)
58 2jvl_A TRMBF1; coactivator, he 24.6 85 0.0029 25.9 4.7 58 102-159 35-95 (107)
59 1xi4_A Clathrin heavy chain; a 24.2 3.3E+02 0.011 33.6 11.0 163 123-286 559-752 (1630)
60 3k6g_A Telomeric repeat-bindin 24.1 58 0.002 28.0 3.4 38 142-183 14-51 (111)
61 2bnm_A Epoxidase; oxidoreducta 23.9 70 0.0024 28.8 4.3 47 113-159 23-70 (198)
62 1zug_A Phage 434 CRO protein; 23.9 56 0.0019 23.9 3.1 45 114-159 17-61 (71)
63 1y9q_A Transcriptional regulat 23.2 72 0.0024 28.7 4.2 47 113-159 24-70 (192)
64 3trb_A Virulence-associated pr 23.1 65 0.0022 26.8 3.6 47 113-159 27-73 (104)
65 2xvc_A ESCRT-III, SSO0910; cel 22.6 52 0.0018 25.4 2.5 38 210-247 12-54 (59)
66 3f52_A CLP gene regulator (CLG 22.4 63 0.0022 26.7 3.4 48 113-160 41-88 (117)
67 2f6m_B Vacuolar protein sortin 22.2 70 0.0024 27.6 3.6 67 173-242 36-106 (109)
68 3lfp_A CSP231I C protein; tran 22.1 47 0.0016 26.6 2.5 46 114-159 15-64 (98)
69 2qfc_A PLCR protein; TPR, HTH, 20.4 1.4E+02 0.0049 27.9 5.9 90 103-202 10-99 (293)
70 1b0n_A Protein (SINR protein); 20.2 49 0.0017 26.8 2.2 47 114-160 15-62 (111)
No 1
>3saf_A Exosome component 10; exoribonuclease, RNA exosome, hydrolase; 2.50A {Homo sapiens} PDB: 3sag_A 3sah_A 2cpr_A
Probab=99.91 E-value=1.2e-23 Score=224.50 Aligned_cols=199 Identities=19% Similarity=0.216 Sum_probs=166.7
Q ss_pred cCCCCeEEEcCHHHHHHHHHHhhcCCeEEEEeeeecCCccCCcCCceeEEEEEeCCeEEEEEcCcccCCCchhHHHHHHH
Q 009284 311 LVVEDIIWVDEVDGLHKAICHIEGCKVVGIDCEWKPNYVKGCKMNKVSIMQIASDEMVFIFDLIKLAEDVPDVLDSCLTR 390 (538)
Q Consensus 311 ~~~~~y~~Idt~e~L~~lle~L~~a~~IgfDtE~~~l~~~~~~~~~VsLiQLAt~~~a~~IdL~~l~~~~p~~ll~~Lk~ 390 (538)
.....|.+|++.+++..+++.+..++.+|||+||.+.. +....++++||++++++++||+..... .+..|++
T Consensus 105 ~~~~~y~~I~t~e~L~~~l~~L~~~~~vavDtE~~~~~---~~~~~l~lIQLa~~~~~~lidpl~l~~-----~l~~L~~ 176 (428)
T 3saf_A 105 IEETPCHFISSLDELVELNEKLLNCQEFAVNLEHHSYR---SFLGLTCLMQISTRTEDFIIDTLELRS-----DMYILNE 176 (428)
T ss_dssp GGGSCEEEECSHHHHHHHHHHHTTCSEEEEEEEEECTT---CSSCEEEEEEEECSSCEEEEETTTTGG-----GGGGGHH
T ss_pred CCCCCcEEECCHHHHHHHHHHHhcCCeEEEEEEecCCC---CCCCeEEEEEEEeCCcEEEEEeccchh-----hHHHHHH
Confidence 44568999999999999999999999999999998752 235689999999988899999875421 2357899
Q ss_pred hhcCCCceEEEeehHHhHHHHHHHhCCccccccchhHhhHHHhh---cCCCCCHHHHHHHHhCCCCCcCcccccCCCCCC
Q 009284 391 ILQSPGILKLGYNFQCDIKQLAHSYGELECFKHYEMLLDIQNVF---KEPKGGLSGLAEKILGAGLNKTRRNSNWEQRPL 467 (538)
Q Consensus 391 lLed~~i~KVGhnlK~Dl~vLa~~~Gil~~~~~~~~ifDtmLAl---~~~s~gLd~LAer~LG~~L~K~e~~S~W~~rpL 467 (538)
+|+|+++.|||||+|+|+++|.+.+|+.. .++||||++. +..++||+.|+++|||..++|+++.++|.+|||
T Consensus 177 lL~dp~i~KV~H~~k~Dl~~L~~~~Gi~~-----~~~fDT~lAa~lL~~~~~gL~~Lv~~~Lg~~l~K~~~~sdW~~rpL 251 (428)
T 3saf_A 177 SLTDPAIVKVFHGADSDIEWLQKDFGLYV-----VNMFDTHQAARLLNLGRHSLDHLLKLYCNVDSNKQYQLADWRIRPL 251 (428)
T ss_dssp HHTCTTSEEEESSCHHHHHHHHHHHCCCC-----SSEEEHHHHHHHTTCSCCSHHHHHHHHHCCCCCCTTTTSCTTCSSC
T ss_pred HHcCCCceEEEeehHHHHHHHHHHcCCCc-----CceeechhHHHHhCCCCCCHHHHHHHHcCCCCCccccccccccCCC
Confidence 99999999999999999999975589843 5689999993 444699999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccccchHHHHHhhcCCcccccCCCC
Q 009284 468 SQNQLEYAALDAVVLLQIFHHVRSCSQPTDVSEGHDKIEWKSYIVSHMDNPKKSKKRPT 526 (538)
Q Consensus 468 t~~Q~~YAAeDA~vlL~L~~~L~~rLee~~~~~~~~~~~w~~~~~~~~~~~~k~~~~~~ 526 (538)
+.+|+.|||.||+++++||+.|.++|++.+. ....|...+..+++..|..+..++
T Consensus 252 s~~q~~YAA~DA~~ll~L~~~L~~~L~~~g~----~~~~~~~~~~~~~~~~~~~~~~~~ 306 (428)
T 3saf_A 252 PEEMLSYARDDTHYLLYIYDKMRLEMWERGN----GQPVQLQVVWQRSRDICLKKFIKP 306 (428)
T ss_dssp CHHHHHHHHHHHHTHHHHHHHHHHHHHHHTT----SCSHHHHHHHHHHHHHTTCCCCCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----ccccHHHHHHHHHHHHHHHhhcCC
Confidence 9999999999999999999999999987553 123577777777776666554433
No 2
>2e6m_A Werner syndrome ATP-dependent helicase homolog; APO form, hydrolase; 2.00A {Mus musculus} PDB: 2e6l_A 2fby_A 2fbv_A 2fbx_A 2fbt_A 2fc0_A*
Probab=99.88 E-value=7.9e-22 Score=189.62 Aligned_cols=173 Identities=25% Similarity=0.418 Sum_probs=139.8
Q ss_pred CCeEEEcCHHHHH----HHHHHhhcCCeEEEEeeeecCCccCCcCCceeEEEEEe-CCeEEEEEcCcccCCCchhHHHHH
Q 009284 314 EDIIWVDEVDGLH----KAICHIEGCKVVGIDCEWKPNYVKGCKMNKVSIMQIAS-DEMVFIFDLIKLAEDVPDVLDSCL 388 (538)
Q Consensus 314 ~~y~~Idt~e~L~----~lle~L~~a~~IgfDtE~~~l~~~~~~~~~VsLiQLAt-~~~a~~IdL~~l~~~~p~~ll~~L 388 (538)
.++.+|++.+++. .+++.+...+.+|||+||.+.+.. +....++++|+|+ ++.++|+|+.+.. . +...|
T Consensus 15 g~i~~i~~~~~~~~~~~~~~~~l~~~~~v~~D~E~~~~~~~-~~~~~~~~iqla~~~~~~~~i~~~~~~-~----~~~~L 88 (208)
T 2e6m_A 15 GSIVYSYEASDCSFLSEDISMRLSDGDVVGFDMEWPPIYKP-GKRSRVAVIQLCVSESKCYLFHISSMS-V----FPQGL 88 (208)
T ss_dssp SEEEEECSHHHHHHHHHHHHHHCCTTCEEEEEEECCC---C-CSCCCCCEEEEECSSSEEEEECGGGCS-S----CCHHH
T ss_pred CcEEEEeCHHHHHHHHHHHHHHhccCCEEEEEeecCCCCCC-CCCCCeEEEEEecCCCeEEEEECcccc-c----chHHH
Confidence 4689999999988 555677778889999999875211 1245789999998 4789999887532 1 23469
Q ss_pred HHhhcCCCceEEEeehHHhHHHHHHHhCCccccccchhHhh-HHHhh---c-CCCCCHHHHHHHHhCCCCCc--Cccccc
Q 009284 389 TRILQSPGILKLGYNFQCDIKQLAHSYGELECFKHYEMLLD-IQNVF---K-EPKGGLSGLAEKILGAGLNK--TRRNSN 461 (538)
Q Consensus 389 k~lLed~~i~KVGhnlK~Dl~vLa~~~Gil~~~~~~~~ifD-tmLAl---~-~~s~gLd~LAer~LG~~L~K--~e~~S~ 461 (538)
+++|+|+++.|||||+|+|++.|.+.+|+.. .++|| +|++. + ..++||++|++++||..+.| ..++++
T Consensus 89 ~~lL~d~~i~Kv~~~~k~D~~~L~~~~gi~~-----~~~fDlt~lAayll~~~~~~~L~~L~~~~l~~~~~K~k~~~~s~ 163 (208)
T 2e6m_A 89 KMLLENKSIKKAGVGIEGDQWKLLRDFDVKL-----ESFVELTDVANEKLKCAETWSLNGLVKHVLGKQLLKDKSIRCSN 163 (208)
T ss_dssp HHHHTCTTSEEEESSHHHHHHHHHHHHCCCC-----CSEEEHHHHHHHHTTCCCCCCHHHHHHHHHSCBCCCCHHHHTSC
T ss_pred HHHhcCCCceEEEEeeHHHHHHHHHHCCCCC-----CCEEEHHHHHHHHccCCCChhHHHHHHHHcCCCcCCCCCeeeCC
Confidence 9999999999999999999999998789843 34899 89992 4 46899999999999998865 457899
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 009284 462 WEQRPLSQNQLEYAALDAVVLLQIFHHVRSCSQPTD 497 (538)
Q Consensus 462 W~~rpLt~~Q~~YAAeDA~vlL~L~~~L~~rLee~~ 497 (538)
|..|||+.+|+.|||.||+++++|++.|.++|++.+
T Consensus 164 W~~~~L~~~q~~YAa~Da~~~~~L~~~L~~~L~~~~ 199 (208)
T 2e6m_A 164 WSNFPLTEDQKLYAATDAYAGLIIYQKLGNLGDTVQ 199 (208)
T ss_dssp TTSSSCCHHHHHHHHHHHHHHHHHHHHHHTCC----
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHhccchhh
Confidence 999999999999999999999999999999997744
No 3
>1vk0_A Hypothetical protein; homohexamer, AT5G06450, struc genomics, protein structure initiative, center for eukaryot structural genomics, CESG; 2.10A {Arabidopsis thaliana} SCOP: c.55.3.5 PDB: 2q3s_A
Probab=99.86 E-value=1e-21 Score=190.81 Aligned_cols=164 Identities=18% Similarity=0.249 Sum_probs=130.0
Q ss_pred EEcCHHHHHHHHHHh------hcCCeEEEEeeeecCCc----cCCcC-CceeEEEEEeCCeEEEEEcCcccCCCchhHHH
Q 009284 318 WVDEVDGLHKAICHI------EGCKVVGIDCEWKPNYV----KGCKM-NKVSIMQIASDEMVFIFDLIKLAEDVPDVLDS 386 (538)
Q Consensus 318 ~Idt~e~L~~lle~L------~~a~~IgfDtE~~~l~~----~~~~~-~~VsLiQLAt~~~a~~IdL~~l~~~~p~~ll~ 386 (538)
.|.+.+++..+++.+ ....++|||+||.+.+. .+..+ ++++++|+|+++.+++|++. ...|.. +.
T Consensus 23 ~v~~~~~l~~~~~~~~~~~~~~~~~vvg~DtEw~p~~~~~~~~~~~~~~~~~LiQla~~~~~~l~~l~---~~~~~~-L~ 98 (206)
T 1vk0_A 23 DVGSSTDISPYLSLIREDSILNGNRAVIFDVYWDVGFPETETKTKTSGWSLSSVKLSTRNLCLFLRLP---KPFHDN-LK 98 (206)
T ss_dssp ECCSSCCCHHHHHHHHHHHHHHSTTEEEEEEEEECCC------CGGGGCEEEEEEEECSSEEEEEECC---SSCCGG-GH
T ss_pred EEecHHHHHHHHHHHHHhhhhcCCCEEEEEeeccCCCcccccccCCCCCceEEEEEecCCCeEEEecc---ccCCcc-HH
Confidence 355555566666554 55679999999997530 11112 58999999999899999982 223432 44
Q ss_pred HHHHhhcCCCceEEEeehHHhHHHHHHHhCCccccccchhHhhHH-Hh---hc---CCCCCHHHHHHHHhCCCC-CcCcc
Q 009284 387 CLTRILQSPGILKLGYNFQCDIKQLAHSYGELECFKHYEMLLDIQ-NV---FK---EPKGGLSGLAEKILGAGL-NKTRR 458 (538)
Q Consensus 387 ~Lk~lLed~~i~KVGhnlK~Dl~vLa~~~Gil~~~~~~~~ifDtm-LA---l~---~~s~gLd~LAer~LG~~L-~K~e~ 458 (538)
.|+.+|+|+++.||||+++.|+..|.+.+|+.. .+++|++ ++ +. ..++||..|++++||.++ +|..+
T Consensus 99 ~L~~lL~d~~i~Kvg~~~~~D~~~L~~~~g~~~-----~~~~Dl~~la~~~lg~~~~~~~gL~~Lv~~~lg~~lK~k~~~ 173 (206)
T 1vk0_A 99 DLYRFFASKFVTFVGVQIEEDLDLLRENHGLVI-----RNAINVGKLAAEARGTLVLEFLGTRELAHRVLWSDLGQLDSI 173 (206)
T ss_dssp HHHHHHTCSSSEEEESSCHHHHHHHHHHHCCCC-----SSEEEHHHHHHHHHTCGGGGGCCHHHHHHHHHCCCCHHHHHH
T ss_pred HHHHHhcCCCceEEEeccHHHHHHHHHhcCCCc-----CCeeeHHHHHHHHcCCCCCCCccHHHHHHHHhCCcCCCCCcc
Confidence 588999999999999999999999998899843 6789997 55 22 247999999999999999 44568
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHh
Q 009284 459 NSNWEQRPLSQNQLEYAALDAVVLLQIFHHVRS 491 (538)
Q Consensus 459 ~S~W~~rpLt~~Q~~YAAeDA~vlL~L~~~L~~ 491 (538)
+|||++ ||+++|+.|||.||+++++||+.|..
T Consensus 174 ~SdW~~-pLs~~Qi~YAA~Da~~l~~l~~~L~~ 205 (206)
T 1vk0_A 174 EAKWEK-AGPEEQLEAAAIEGWLIVNVWDQLSD 205 (206)
T ss_dssp HHTGGG-SCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCC-cCCHHHHHHHHHHHHHHHHHHHHHHc
Confidence 999999 99999999999999999999999965
No 4
>2hbj_A Exosome complex exonuclease RRP6; RNA metabolism, RNA surveillance, RNA processing, hydrolase, gene regulation; 2.10A {Saccharomyces cerevisiae} SCOP: a.60.8.4 c.55.3.5 PDB: 2hbk_A 2hbl_A* 2hbm_A*
Probab=99.84 E-value=2.4e-20 Score=198.14 Aligned_cols=172 Identities=24% Similarity=0.306 Sum_probs=146.3
Q ss_pred CCCeEEEcCHHHHHHHHHHhhcCCeEEEEeeeecCCccCCcCCceeEEEEEeCCeEEEEEcCcccCCCchhHHHHHHHhh
Q 009284 313 VEDIIWVDEVDGLHKAICHIEGCKVVGIDCEWKPNYVKGCKMNKVSIMQIASDEMVFIFDLIKLAEDVPDVLDSCLTRIL 392 (538)
Q Consensus 313 ~~~y~~Idt~e~L~~lle~L~~a~~IgfDtE~~~l~~~~~~~~~VsLiQLAt~~~a~~IdL~~l~~~~p~~ll~~Lk~lL 392 (538)
...+.+|++.+++..+++.+..+..+|+|+||.+.. +....++++|+++++.+|++|..... ..+..|+++|
T Consensus 84 ~~~~~~I~t~~~L~~~~~~L~~~~~vavDtE~~~~~---~~~~~l~liQla~~~~~ylid~l~l~-----~~l~~L~~lL 155 (410)
T 2hbj_A 84 DSVPIWVDTSTELESMLEDLKNTKEIAVDLEHHDYR---SYYGIVCLMQISTRERDYLVDTLKLR-----ENLHILNEVF 155 (410)
T ss_dssp GCCCEEECSHHHHHHHHHHHTTCSEEEEEEEEECSS---SSSCEEEEEEEECSSCEEEEETTTTT-----TTGGGGHHHH
T ss_pred CCCcEEeCCHHHHHHHHHHHhhCCceEEEeeecCCc---CCCCcEEEEEEEECCcEEEEechhhh-----hhHHHHHHHH
Confidence 346889999999999999988889999999998751 12457999999998888998864321 1134689999
Q ss_pred cCCCceEEEeehHHhHHHHHHHhCCccccccchhHhhHHHhh---cCCCCCHHHHHHHHhCCCCCcCcccccCCCCCCCH
Q 009284 393 QSPGILKLGYNFQCDIKQLAHSYGELECFKHYEMLLDIQNVF---KEPKGGLSGLAEKILGAGLNKTRRNSNWEQRPLSQ 469 (538)
Q Consensus 393 ed~~i~KVGhnlK~Dl~vLa~~~Gil~~~~~~~~ifDtmLAl---~~~s~gLd~LAer~LG~~L~K~e~~S~W~~rpLt~ 469 (538)
+|+++.|||||+|+|+.+|.+.+|+.. .++||||++. +..++||+.|+++|||..++|+.+.++|..|||++
T Consensus 156 ~d~~i~KV~h~~k~Dl~~L~~~~Gi~~-----~~~fDt~lAa~LL~~~~~~L~~L~~~~lg~~l~K~~~~sdW~~rpL~~ 230 (410)
T 2hbj_A 156 TNPSIVKVFHGAFMDIIWLQRDLGLYV-----VGLFDTYHASKAIGLPRHSLAYLLENFANFKTSKKYQLADWRIRPLSK 230 (410)
T ss_dssp TCTTSEEEESSCHHHHHHHHHHHCCCC-----SSEEEHHHHHHHHTCSCCSHHHHHHHHSCCCCCCTTTTSCTTCSSCCH
T ss_pred cCCCceEEEEehHHHHHHHHHHcCCCc-----CCEEEcHHHHHHhCCCccCHHHHHHHHcCCCCCccccccCCCCCCCCH
Confidence 999999999999999999987789844 4489999993 43379999999999999999998899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 009284 470 NQLEYAALDAVVLLQIFHHVRSCSQPTD 497 (538)
Q Consensus 470 ~Q~~YAAeDA~vlL~L~~~L~~rLee~~ 497 (538)
+|+.|||.||+++++||+.|.++|++.+
T Consensus 231 ~q~~YAa~Da~~ll~L~~~L~~~L~~~g 258 (410)
T 2hbj_A 231 PMTAAARADTHFLLNIYDQLRNKLIESN 258 (410)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999997754
No 5
>1yt3_A Ribonuclease D, RNAse D; exoribonuclease, exonuclease, hydrolase, tRNA processing, hydrolase,translation; 1.60A {Escherichia coli} SCOP: a.60.8.3 a.60.8.3 c.55.3.5
Probab=99.82 E-value=1.2e-19 Score=190.17 Aligned_cols=169 Identities=23% Similarity=0.331 Sum_probs=144.4
Q ss_pred CeEEEcCHHHHHHHHHHhhcCCeEEEEeeeecCCccCCcCCceeEEEEEeCCeEEEEEcCcccCCCchhHHHHHHHhhcC
Q 009284 315 DIIWVDEVDGLHKAICHIEGCKVVGIDCEWKPNYVKGCKMNKVSIMQIASDEMVFIFDLIKLAEDVPDVLDSCLTRILQS 394 (538)
Q Consensus 315 ~y~~Idt~e~L~~lle~L~~a~~IgfDtE~~~l~~~~~~~~~VsLiQLAt~~~a~~IdL~~l~~~~p~~ll~~Lk~lLed 394 (538)
+|.+|++.+++..+++.+...+.++||+||.+.. +....++++|+++++.+|++|.... . .+..|+++|+|
T Consensus 2 ~~~~I~t~~~l~~~~~~l~~~~~va~D~E~~~~~---~~~~~l~liqla~~~~~~lid~~~l--~----~~~~L~~ll~d 72 (375)
T 1yt3_A 2 NYQMITTDDALASLCEAVRAFPAIALDTEFVRTR---TYYPQLGLIQLFDGEHLALIDPLGI--T----DWSPLKAILRD 72 (375)
T ss_dssp CCEEECSHHHHHHHHHHHTTSSEEEEEEEEECCS---CSSCEEEEEEEECSSCEEEECGGGC--S----CCHHHHHHHHC
T ss_pred CeEEeCCHHHHHHHHHHHcCCCeEEEEeeecCCC---cCCCceEEEEEecCCcEEEEeCCCC--C----ChHHHHHHHcC
Confidence 4678889899999999988889999999998752 2245789999998778888875322 1 13578999999
Q ss_pred CCceEEEeehHHhHHHHHHHhCCccccccchhHhhHHHhh---c-CCCCCHHHHHHHHhCCCCCcCcccccCCCCCCCHH
Q 009284 395 PGILKLGYNFQCDIKQLAHSYGELECFKHYEMLLDIQNVF---K-EPKGGLSGLAEKILGAGLNKTRRNSNWEQRPLSQN 470 (538)
Q Consensus 395 ~~i~KVGhnlK~Dl~vLa~~~Gil~~~~~~~~ifDtmLAl---~-~~s~gLd~LAer~LG~~L~K~e~~S~W~~rpLt~~ 470 (538)
+++.|||||+|+|++.|.+.+|+.. .++||||++. + ..++||+.|+++|||..++|+.+.++|..|||+++
T Consensus 73 ~~i~Kv~h~~k~Dl~~L~~~~Gi~~-----~~~fDt~lAa~lL~~~~~~~L~~L~~~~l~~~l~K~~~~sdw~~rpL~~~ 147 (375)
T 1yt3_A 73 PSITKFLHAGSEDLEVFLNVFGELP-----QPLIDTQILAAFCGRPMSWGFASMVEEYSGVTLDKSESRTDWLARPLTER 147 (375)
T ss_dssp TTSEEEESSCHHHHHHHHHHHSSCC-----SSEEEHHHHHHHTTCCTTCCHHHHHHHHHCCCCCCTTTTSCTTSSSCCHH
T ss_pred CCceEEEeeHHHHHHHHHHHcCCCC-----CcEEEcHHHHHHcCCCCChhHHHHHHHHcCCCCCCCcccCCCCCCCCCHH
Confidence 9999999999999999987689843 4689999993 4 45899999999999999999988999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCC
Q 009284 471 QLEYAALDAVVLLQIFHHVRSCSQPTD 497 (538)
Q Consensus 471 Q~~YAAeDA~vlL~L~~~L~~rLee~~ 497 (538)
|..|||.||+++++||+.|.++|++.+
T Consensus 148 q~~YAa~Da~~l~~L~~~L~~~L~~~g 174 (375)
T 1yt3_A 148 QCEYAAADVWYLLPITAKLMVETEASG 174 (375)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999999997644
No 6
>3cym_A Uncharacterized protein BAD_0989; structural genomics, unknown function; 2.10A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}
Probab=99.70 E-value=8e-17 Score=172.51 Aligned_cols=170 Identities=18% Similarity=0.220 Sum_probs=138.6
Q ss_pred CeEEEcCHHHHHHHHHHhhcC-CeEEEEeeeecCCccCCcCCceeEEEEEe-CCeEEEEEcCcccCCCchhHHHHHHHhh
Q 009284 315 DIIWVDEVDGLHKAICHIEGC-KVVGIDCEWKPNYVKGCKMNKVSIMQIAS-DEMVFIFDLIKLAEDVPDVLDSCLTRIL 392 (538)
Q Consensus 315 ~y~~Idt~e~L~~lle~L~~a-~~IgfDtE~~~l~~~~~~~~~VsLiQLAt-~~~a~~IdL~~l~~~~p~~ll~~Lk~lL 392 (538)
.+.+|++.+++..+++.+..+ +.++||+||.+.. .....++++|+++ ++.+||||........ ..+..|+++|
T Consensus 17 ~~~~I~t~e~L~~~~~~L~~~~~~vavDtE~~~~~---~~~~~l~liQla~~~~~~~lid~l~~~~~~--~~l~~L~~lL 91 (440)
T 3cym_A 17 VPNVIDTLPAFRDYCSELASSHGSLAADAERASGF---RYGHEDWLVQFKRDGAGIGLLDPQALAAAG--ADWNDFNRAV 91 (440)
T ss_dssp CCCEECSHHHHHHHHHHHHSCEEEEEEEEEECTTT---SSSCCEEEEEEEEETTEEEEECHHHHHHTT--CCHHHHHHHH
T ss_pred CCEeeCCHHHHHHHHHHHHhcCCeEEEEeeecCCC---CCCCCEEEEEEEECCCcEEEEEcCCccccc--cCHHHHHHHH
Confidence 346788889999999988877 8899999998752 1245789999998 4568998763210000 0145799999
Q ss_pred cCCCceEEEeehHHhHHHHHHHhCCccccccchhHhhHHHh---hcCCCCCHHHHHHHHhCCCCCcCcccccCCCCCCCH
Q 009284 393 QSPGILKLGYNFQCDIKQLAHSYGELECFKHYEMLLDIQNV---FKEPKGGLSGLAEKILGAGLNKTRRNSNWEQRPLSQ 469 (538)
Q Consensus 393 ed~~i~KVGhnlK~Dl~vLa~~~Gil~~~~~~~~ifDtmLA---l~~~s~gLd~LAer~LG~~L~K~e~~S~W~~rpLt~ 469 (538)
+|+ .|||||+|+|+..|. .+|+.. .++|||+++ ++..++||+.|+++|+|..++|+.+.++|..|||++
T Consensus 92 ~d~--~KV~h~~k~Dl~~L~-~~gi~~-----~~~fDt~lAa~lL~~~~~gL~~L~~~~lg~~~~K~~~~sdw~~rpLs~ 163 (440)
T 3cym_A 92 GDA--VWILHDSLQDLPGFD-ELGMEP-----QRLFDTEIAARLLGLKRFGLAAVTEHFLGLTLAKEHSAADWSYRPLPR 163 (440)
T ss_dssp TTC--EEEESSHHHHHHHHH-HHTCCC-----CEEEEHHHHHHHTTCSSCSHHHHHHHHHCEECCCCCTTCCTTCSSCCH
T ss_pred CCC--CEEEEcCHHHHHHHH-HcCCcC-----CceehHHHHHHHhCCCCCCHHHHHHHHhCCCcccccccCCCcCCCCCH
Confidence 997 699999999999997 489843 468999999 342389999999999999999998999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 009284 470 NQLEYAALDAVVLLQIFHHVRSCSQPTD 497 (538)
Q Consensus 470 ~Q~~YAAeDA~vlL~L~~~L~~rLee~~ 497 (538)
+|..|||.||+++++||+.|.++|++.+
T Consensus 164 ~q~~YAa~Da~~Ll~L~~~L~~~L~~~g 191 (440)
T 3cym_A 164 DWRNYAALDVELLIELETKMRAELKRQG 191 (440)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999997644
No 7
>2kfn_A Klenow fragment of DNA polymerase I; complex (polymerase/DNA), exonuclease, transferase, transferase/DNA complex; HET: US1; 2.03A {Escherichia coli} SCOP: c.55.3.5 e.8.1.1 PDB: 1d9f_A* 1d9d_A* 1krp_A* 1ksp_A* 1qsl_A* 1kfs_A* 2kfz_A* 2kzm_A* 2kzz_A* 1dpi_A* 1kfd_A* 1kln_A* 1d8y_A*
Probab=99.63 E-value=5.2e-15 Score=164.15 Aligned_cols=173 Identities=20% Similarity=0.193 Sum_probs=137.9
Q ss_pred CCeEEEcCHHHHHHHHHHhhcCCeEEEEeeeecCCccCCcCCceeEEEEEe-CCeEEEEEcCccc----CCC-chhHHHH
Q 009284 314 EDIIWVDEVDGLHKAICHIEGCKVVGIDCEWKPNYVKGCKMNKVSIMQIAS-DEMVFIFDLIKLA----EDV-PDVLDSC 387 (538)
Q Consensus 314 ~~y~~Idt~e~L~~lle~L~~a~~IgfDtE~~~l~~~~~~~~~VsLiQLAt-~~~a~~IdL~~l~----~~~-p~~ll~~ 387 (538)
.+|.+|++.+++..|++.+...+.++||+|++++. +....+..+|++. ++.++|+|+.+.. ... .++++..
T Consensus 5 ~~y~~I~~~~~l~~~~~~l~~~~~va~DtEttgl~---~~~~~iv~I~~~~~~g~~~yip~~~~~~~~~~~l~~~~vl~~ 81 (605)
T 2kfn_A 5 DNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLD---NISANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERALEL 81 (605)
T ss_dssp SSSEECCSHHHHHHHHHHHHTSSSEEEEEEESCSC---TTTCCEEEEEEEEETTEEEEEECCCCSTTCCCCCCHHHHHHH
T ss_pred hheEEecCHHHHHHHHHhcccCCeEEEEEecCCCC---cccCceEEEEEEEcCCcEEEEeccccccccccccCHHHHHHH
Confidence 46788888899999999888788899999999872 1134566677876 7888999876521 111 1345678
Q ss_pred HHHhhcCCCceEEEeehHHhHHHHHHHhCCccccccchhHhhHHHh---hc--CCCCCHHHHHHHHhCCCCC-------c
Q 009284 388 LTRILQSPGILKLGYNFQCDIKQLAHSYGELECFKHYEMLLDIQNV---FK--EPKGGLSGLAEKILGAGLN-------K 455 (538)
Q Consensus 388 Lk~lLed~~i~KVGhnlK~Dl~vLa~~~Gil~~~~~~~~ifDtmLA---l~--~~s~gLd~LAer~LG~~L~-------K 455 (538)
|+++|+++.+.||+||+|+|++.|.+ +|+.. .+.++|||++ ++ ..+++|+.|+++|||.... |
T Consensus 82 L~~~L~d~~i~kV~hnak~D~~~L~~-~Gi~l----~~~~~DT~laayLL~p~~~~~~L~~La~~~Lg~~~i~~~~~~gK 156 (605)
T 2kfn_A 82 LKPLLEDEKALKVGQNLKYDRGILAN-YGIEL----RGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGK 156 (605)
T ss_dssp HHHHHTCTTSCEEESSHHHHHHHHHT-TTCCC----CCEEEEHHHHHHHHCTTSSCCSHHHHHHHHSCCCCCCHHHHHCS
T ss_pred HHHHHcCCCCeEEEECcHHHHHHHHH-CCCCC----CCccccHHHHHHHhCCCCCCCCHHHHHHHhcCCCcccHHHHhCC
Confidence 99999999999999999999999998 78843 1458999999 33 3579999999999987653 4
Q ss_pred CcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 009284 456 TRRNSNWEQRPLSQNQLEYAALDAVVLLQIFHHVRSCSQP 495 (538)
Q Consensus 456 ~e~~S~W~~rpLt~~Q~~YAAeDA~vlL~L~~~L~~rLee 495 (538)
+.+.++|..+|+ +++.+||+.||+++++|++.|.++|++
T Consensus 157 g~~~~~~~~~~l-e~~~~yAa~Da~~~~~L~~~L~~~L~~ 195 (605)
T 2kfn_A 157 GKNQLTFNQIAL-EEAGRYAAEDADVTLQLHLKMWPDLQK 195 (605)
T ss_dssp STTCCCGGGSCH-HHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred CcccCCcccCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445568988888 668999999999999999999999976
No 8
>3pv8_A DNA polymerase I; DNA polymerase I, protein-DNA complex, thymine-adenine, CLOS conformation; HET: DNA 2DT D3T; 1.52A {Geobacillus kaustophilus} PDB: 3px0_A* 3px4_A* 3px6_A* 3thv_A* 3ti0_A* 4dse_A* 4dsf_A* 4ds4_A* 4dqp_A* 4dqi_A* 4ds5_A* 4e0d_A* 4dqr_A* 4dqq_A* 3tan_A* 3tap_A* 3taq_A* 3tar_A* 4dqs_A* 3hp6_A* ...
Probab=99.50 E-value=3.7e-14 Score=156.94 Aligned_cols=148 Identities=8% Similarity=-0.023 Sum_probs=119.7
Q ss_pred CeEEEEeeeecCCccCCcCCceeEEEEEeCCeEEEEEcCcccCCCchhHHHHHHHhhcCCCceEEEeehHHhHHHHHHHh
Q 009284 336 KVVGIDCEWKPNYVKGCKMNKVSIMQIASDEMVFIFDLIKLAEDVPDVLDSCLTRILQSPGILKLGYNFQCDIKQLAHSY 415 (538)
Q Consensus 336 ~~IgfDtE~~~l~~~~~~~~~VsLiQLAt~~~a~~IdL~~l~~~~p~~ll~~Lk~lLed~~i~KVGhnlK~Dl~vLa~~~ 415 (538)
...++|+|+.... +....+.+++++.++++||+|+.+. .....|+++|+|+++.||+||+|+|+++|.+ +
T Consensus 30 ~~~aldtE~~~~~---~~~a~Lvgisla~~~~a~yIp~~~~------~~l~~Lk~lLed~~i~KV~hn~K~Dl~vL~~-~ 99 (592)
T 3pv8_A 30 DKAALVVEVVEEN---YHDAPIVGIAVVNEHGRFFLRPETA------LADPQFVAWLGDETKKKSMFDSKRAAVALKW-K 99 (592)
T ss_dssp SEEEEEEECCSSS---CTTCCCCEEEEEETTEEEEECHHHH------TTCHHHHHHHTCTTSEEEESSHHHHHHHHHH-T
T ss_pred cCcEEEEEEcCCc---cCcccEEEEEEEcCCceEEEccchh------hHHHHHHHHHhCCCCeEEEechHHHHHHHHH-c
Confidence 4568999987652 2244566778888878999987541 1345799999999999999999999999988 8
Q ss_pred CCccccccchhHhhHHHh---hc--CCCCCHHHHHHHHhCCCCCcCcccccCCC---CCCCHHHHHHHHHHHHHHHHHHH
Q 009284 416 GELECFKHYEMLLDIQNV---FK--EPKGGLSGLAEKILGAGLNKTRRNSNWEQ---RPLSQNQLEYAALDAVVLLQIFH 487 (538)
Q Consensus 416 Gil~~~~~~~~ifDtmLA---l~--~~s~gLd~LAer~LG~~L~K~e~~S~W~~---rpLt~~Q~~YAAeDA~vlL~L~~ 487 (538)
|+.. .+++||||++ ++ ..+|+|++|+++|||..+++.++..+|.+ ++..+.+.+|||.||+++++|++
T Consensus 100 Gi~l----~g~~fDTmLAAYLL~p~~~~~~L~~La~~yLg~~l~~~ee~~gkg~~~~~~~~e~~~~YAa~DA~~l~~L~~ 175 (592)
T 3pv8_A 100 GIEL----CGVSFDLLLAAYLLDPAQGVDDVAAAAKMKQYEAVRPDEAVYGKGAKRAVPDEPVLAEHLVRKAAAIWELER 175 (592)
T ss_dssp TCCC----CCEEEEHHHHHHHHCGGGCCCSHHHHHGGGTCCSSCCHHHHHCSGGGCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCC----CCccchHHHHHHHcCCCCCCCCHHHHHHHHcCCCCchHHHhcCccccccCccHHHHHHHHHHHHHHHHHHHH
Confidence 9843 2678999999 34 45899999999999999988777777753 45557788999999999999999
Q ss_pred HHHhccCCCC
Q 009284 488 HVRSCSQPTD 497 (538)
Q Consensus 488 ~L~~rLee~~ 497 (538)
.|.++|++.+
T Consensus 176 ~L~~~L~e~~ 185 (592)
T 3pv8_A 176 PFLDELRRNE 185 (592)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHhcch
Confidence 9999997744
No 9
>1x9m_A DNA polymerase; DNA ploymerase, N-2-acetylaminofluorene, replication block, mutagenesis, transferase/electron transport/DNA complex; HET: DNA 2DT 8FG; 2.10A {Enterobacteria phage T7} SCOP: c.55.3.5 e.8.1.1 PDB: 1skr_A* 1skw_A* 1sl0_A* 1sks_A* 1sl2_A* 1t7p_A* 1t8e_A* 1tk0_A* 1tk5_A* 1tk8_A* 1tkd_A* 1sl1_A* 1x9s_A* 1x9w_A* 1zyq_A* 2ajq_A*
Probab=99.06 E-value=2.3e-10 Score=128.88 Aligned_cols=148 Identities=15% Similarity=0.077 Sum_probs=110.7
Q ss_pred eEEEEeeeecCCccCCcCCceeEEEEEe--CCeEEEEEcCcccCCCchhHHHHHHHhhcCCCceEEEeeh-HHhHHHHHH
Q 009284 337 VVGIDCEWKPNYVKGCKMNKVSIMQIAS--DEMVFIFDLIKLAEDVPDVLDSCLTRILQSPGILKLGYNF-QCDIKQLAH 413 (538)
Q Consensus 337 ~IgfDtE~~~l~~~~~~~~~VsLiQLAt--~~~a~~IdL~~l~~~~p~~ll~~Lk~lLed~~i~KVGhnl-K~Dl~vLa~ 413 (538)
+++||+|++++.. ...++.++|+.. .+..+.+|... .+..+..|+++|+ +.+.||+||+ |+|+++|.+
T Consensus 1 ~vv~D~ETtGl~~---~~d~i~~iqi~~~~~~~~~~~~p~~-----i~~~l~~L~~~l~-~~~~kV~HNa~kfD~~~L~~ 71 (698)
T 1x9m_A 1 MIVSDIEANALLE---SVTKFHCGVIYDYSTAEYVSYRPSD-----FGAYLDALEAEVA-RGGLIVFHNGHKYDVPALTK 71 (698)
T ss_dssp CEEEEEEESSCGG---GCCCEEEEEEEETTTTEEEEECGGG-----HHHHHHHHHHHHH-TTCCEEESSTTTTHHHHHHH
T ss_pred CEEEEcCCCCcCC---CCCEEEEEEEEecCCCcEEEEChHH-----HHHHHHHHHHHHh-cCCeEEEcCChHHHHHHHHH
Confidence 4799999998832 245788999987 45777665321 1235678999999 8899999999 999999988
Q ss_pred Hh------CCccccccchhHhhHHHh---hc--CCCCCHHHHHHHHh-------CCCC-----C-----------cCcc-
Q 009284 414 SY------GELECFKHYEMLLDIQNV---FK--EPKGGLSGLAEKIL-------GAGL-----N-----------KTRR- 458 (538)
Q Consensus 414 ~~------Gil~~~~~~~~ifDtmLA---l~--~~s~gLd~LAer~L-------G~~L-----~-----------K~e~- 458 (538)
.+ |+... .+.++|||++ ++ ..+|+|++|+++|| |..+ . ++..
T Consensus 72 ~~~~~~~~Gi~l~---~~~~~DTmlaayLL~p~~~~~~L~~La~~~L~~sL~~~g~~lg~~Ki~~~~~~g~~~~~kg~~~ 148 (698)
T 1x9m_A 72 LAKLQLNREFHLP---RENCIDTLVLSRLIHSNLKDTDMGLLRSGKLPGALEAWGYRLGEMKGEYKDDFKRMLEEQGEEY 148 (698)
T ss_dssp HHHHHHCCCCCCC---GGGEEEHHHHHHHHTTTSCCCTTTTSCGGGSCSCCCHHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred hhhhcccCCccCC---CCcchhHHHHHHHhCCCCCCCCHHHHHHHHcccchhhhcccccccccCHHHHhCcccccccccc
Confidence 43 77321 1568999999 23 45899999999997 4322 1 2211
Q ss_pred -c-ccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCCCC
Q 009284 459 -N-SNWEQRPLSQNQLEYAALDAVVLLQIFHHVRSCSQPTDV 498 (538)
Q Consensus 459 -~-S~W~~rpLt~~Q~~YAAeDA~vlL~L~~~L~~rLee~~~ 498 (538)
. .+|.. +++.+.+||+.||.++++|++.|.++|++.+.
T Consensus 149 ~~~~~~~~--~~~~~~~YA~~Da~~t~~L~~~L~~~L~~~~~ 188 (698)
T 1x9m_A 149 VDGMEWWN--FNEEMMDYNVQDVVVTKALLEKLLSDKHYFPP 188 (698)
T ss_dssp CTTGGGTS--CCHHHHHHHHHHHHHHHHHHHHHHTCTTTSCT
T ss_pred cccCCccc--cCHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 1 27865 55788999999999999999999999988654
No 10
>1bgx_T TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhibition, helix-coil dynamics, inhibitor design, complex (polymerase/inhibitor); 2.30A {Thermus aquaticus} SCOP: a.60.7.1 c.120.1.2 c.55.3.5 e.8.1.1 PDB: 1cmw_A 1tau_A* 1taq_A*
Probab=98.79 E-value=2.9e-09 Score=122.07 Aligned_cols=173 Identities=14% Similarity=0.025 Sum_probs=126.6
Q ss_pred HHHHhhcchhHHHHHHHHhhccCCHHHHHHHHHHcCCcccccccCcccCCcccccccccccCCCCeEEEcCHHHHHHHHH
Q 009284 251 AEAKTKGDKRLLEYLVYLAMEAGYSEKVDELCERYSLEGFLKTREPEAGFVHSRFLHLKELVVEDIIWVDEVDGLHKAIC 330 (538)
Q Consensus 251 a~~~~~~D~~l~~~lv~L~~~~~d~~~L~~l~~ryef~s~l~el~~~~~~~~~~~~~l~~~~~~~y~~Idt~e~L~~lle 330 (538)
.++++.+|+++...+. ...+||.+++.++|++|||++|++++... .. + + . ..|..|++
T Consensus 244 ~L~~i~~d~~~~~~~~--~~~~~d~~~l~~~~~~~~f~~~~~~~~~~--~~-----~-~-~--~~~~~~~~--------- 301 (832)
T 1bgx_T 244 DLAKVRTDLPLEVDFA--KRREPDRERLRAFLERLEFGSLLHEFGLL--ES-----P-K-A--LEEAPWPP--------- 301 (832)
T ss_dssp GSSCCCSCCCCCCCCC--CCCCCCHHHHHHHHTTTTCCSTTCCSCCC--CC-----C-S-C--CEEECSSC---------
T ss_pred HHHhhccCCCCCCChh--HcCCccHHHHHHHHHHcCCHHHHHhhccc--cC-----C-C-c--CceeEeec---------
Confidence 5677888888765554 77889999999999999999999988321 00 0 0 0 12444443
Q ss_pred HhhcCCeEEEEeeeecCCccCCcCCceeE-EEEEe-CCeEEEEEcCcccCCCchhHHHHHHHhhcCCCceEEEeehHHhH
Q 009284 331 HIEGCKVVGIDCEWKPNYVKGCKMNKVSI-MQIAS-DEMVFIFDLIKLAEDVPDVLDSCLTRILQSPGILKLGYNFQCDI 408 (538)
Q Consensus 331 ~L~~a~~IgfDtE~~~l~~~~~~~~~VsL-iQLAt-~~~a~~IdL~~l~~~~p~~ll~~Lk~lLed~~i~KVGhnlK~Dl 408 (538)
..+..+++|+|+++ ++ ...+ +|+|. ++.++|+|+ + + ..|++||+++.+ |+|+|+
T Consensus 302 --~~~~~va~d~et~~-~~------~~~l~vg~a~~~g~a~yvp~-~------~---~~Lk~lLed~~i-----n~K~d~ 357 (832)
T 1bgx_T 302 --PEGAFVGFVLSRKE-PM------WADLLALAAARGGRVHRAPE-P------Y---KALRDLKEARGL-----LAKDLS 357 (832)
T ss_dssp --CTTCCBEEECSSSC-TT------TCCCCEEECBSSSEEECCSC-H------H---HHHHHCSSBCBT-----THHHHH
T ss_pred --cCCceEEEEEecCC-cc------cCceeEEEEEcCCCEEEEEC-C------H---HHHHHHHhCCCC-----ChHHHH
Confidence 23466999999765 21 1223 55776 678899877 3 1 369999999987 999999
Q ss_pred HHHHHHhCCccccccchhHhhHHHh---hcCCCCCHHHHHHHHhCCCCCcCcccccCCCCCCCHHHHHHHHHHHHHHHHH
Q 009284 409 KQLAHSYGELECFKHYEMLLDIQNV---FKEPKGGLSGLAEKILGAGLNKTRRNSNWEQRPLSQNQLEYAALDAVVLLQI 485 (538)
Q Consensus 409 ~vLa~~~Gil~~~~~~~~ifDtmLA---l~~~s~gLd~LAer~LG~~L~K~e~~S~W~~rpLt~~Q~~YAAeDA~vlL~L 485 (538)
++|.+ +|+.. ..++|||++ ++..+|+|++|+++| |. +|. ++ || +||+++++|
T Consensus 358 ~~L~~-~Gi~~-----~~~~Dt~laayLl~p~~~~l~~l~~~~-gk---------~~~------~~--ya-~da~~~~~l 412 (832)
T 1bgx_T 358 VLALR-EGLGL-----PPGDDPMLLAYLLDPSNTTPEGVARRY-GG---------EWT------EE--AG-ERAALSERL 412 (832)
T ss_dssp HHHHH-HTCCC-----CBCCCHHHHHHHHCTTCCSTTHHHHHH-SC---------CCC------SS--HH-HHHHHHHHH
T ss_pred HHHHH-cCCcc-----CcccCHHHHHHHcCCCCCCHHHHHHHh-CC---------Cch------HH--HH-HHHHHHHHH
Confidence 99998 89843 357899999 342189999999999 32 131 11 87 799999999
Q ss_pred HHHHHhccC
Q 009284 486 FHHVRSCSQ 494 (538)
Q Consensus 486 ~~~L~~rLe 494 (538)
++.|.++|+
T Consensus 413 ~~~l~~~L~ 421 (832)
T 1bgx_T 413 FANLWGRLE 421 (832)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 999999997
No 11
>4dfk_A DNA polymerase I, thermostable; DNA polymerase, transferase-DNA complex; HET: DNA DOC 0L5; 1.65A {Thermus aquaticus} PDB: 1jxe_A* 3ktq_A* 3lwl_A* 3lwm_A* 3m8s_A* 3m8r_A* 3oju_A* 3rr7_A* 3rr8_A* 3rrg_A* 3ojs_A* 3rtv_A* 3sv3_A* 3sv4_A* 3syz_A* 3sz2_A* 3t3f_A* 4df4_A* 4df8_A* 4dfj_A* ...
Probab=98.50 E-value=1.4e-07 Score=103.38 Aligned_cols=116 Identities=12% Similarity=-0.017 Sum_probs=90.8
Q ss_pred CeEEEEeeeecCCccCCcCCceeEEEEEeCCeEEEEEcCcccCCCchhHHHHHHHhhcCCCceEEEeehHHhHHHHHHHh
Q 009284 336 KVVGIDCEWKPNYVKGCKMNKVSIMQIASDEMVFIFDLIKLAEDVPDVLDSCLTRILQSPGILKLGYNFQCDIKQLAHSY 415 (538)
Q Consensus 336 ~~IgfDtE~~~l~~~~~~~~~VsLiQLAt~~~a~~IdL~~l~~~~p~~ll~~Lk~lLed~~i~KVGhnlK~Dl~vLa~~~ 415 (538)
+.+++|+|+.... +....+.+++++.++++|+++ ..+..|+++|+| +.||+||+|+|++ + +
T Consensus 11 ~~valDtE~~~~~---~~~a~Lvgi~la~~~~a~~i~----------~~l~~l~~~l~d--~~kV~hn~K~Dl~---~-~ 71 (540)
T 4dfk_A 11 EGAFVGFVLSRKE---PMWADLLALAAARGGRVHRAP----------EPYKALRDLKEA--RGLLAKDLSVLAL---R-E 71 (540)
T ss_dssp TTCEEEEEESSSC---TTTCCEEEEEEEETTEEEECS----------SHHHHHTTCSSB--CSTTHHHHHHHHH---H-T
T ss_pred CceEEEEEecCCc---cCcccEEEEEEEcCCEEEEeh----------hhHHHHHHHHcC--CCEEEeccHHHHH---H-c
Confidence 3489999998762 223456677888888888764 135679999999 8899999999999 4 7
Q ss_pred CCccccccchhHhhHHHh---hc-CCCCCHHHHHHHHhCCCCCcCcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHh
Q 009284 416 GELECFKHYEMLLDIQNV---FK-EPKGGLSGLAEKILGAGLNKTRRNSNWEQRPLSQNQLEYAALDAVVLLQIFHHVRS 491 (538)
Q Consensus 416 Gil~~~~~~~~ifDtmLA---l~-~~s~gLd~LAer~LG~~L~K~e~~S~W~~rpLt~~Q~~YAAeDA~vlL~L~~~L~~ 491 (538)
|+.. .++||||++ ++ . +|+|++|+++|++. |. .+|+.||+++++|++.|.+
T Consensus 72 Gi~~-----~~~fDT~laAyLL~p~-~~~L~~La~~yl~~----------~g---------k~a~~DA~~t~~L~~~L~~ 126 (540)
T 4dfk_A 72 GLGL-----PPGDDPMLLAYLLDPS-NTTPEGVARRYGGE----------WT---------EEAGERAALSERLFANLWG 126 (540)
T ss_dssp TCCC-----CBCCCHHHHHHHHCTT-CCCHHHHHHHHTSC----------CC---------SCHHHHHHHHHHHHHHHHH
T ss_pred CCCC-----CcceeHHHHHHHhCCC-CCCHHHHHHHHhhh----------hc---------cchHHHHHHHHHHHHHHHH
Confidence 8742 267899999 34 5 89999999999985 11 1367999999999999999
Q ss_pred cc-CC
Q 009284 492 CS-QP 495 (538)
Q Consensus 492 rL-ee 495 (538)
+| ++
T Consensus 127 ~L~~~ 131 (540)
T 4dfk_A 127 RLEGE 131 (540)
T ss_dssp HTTTC
T ss_pred HHHhh
Confidence 99 54
No 12
>3v9w_A Ribonuclease T; DEDD nucleases family, EXO-nucleases, hydrolase-DNA complex; HET: DNA; 1.70A {Escherichia coli} PDB: 3ngy_A 3v9u_A* 3ngz_A* 3va3_A* 3v9z_A* 3nh0_A 3nh2_A 3nh1_A* 3v9s_A* 3v9x_A* 3va0_A* 2is3_A
Probab=97.88 E-value=4.7e-05 Score=73.93 Aligned_cols=158 Identities=13% Similarity=0.064 Sum_probs=92.6
Q ss_pred EcCHHHHHHHHHHhhcCCeEEEEeeeecCCccCCcCCceeEEEEEe-------CCe-----EEEEEcCc---cc------
Q 009284 319 VDEVDGLHKAICHIEGCKVVGIDCEWKPNYVKGCKMNKVSIMQIAS-------DEM-----VFIFDLIK---LA------ 377 (538)
Q Consensus 319 Idt~e~L~~lle~L~~a~~IgfDtE~~~l~~~~~~~~~VsLiQLAt-------~~~-----a~~IdL~~---l~------ 377 (538)
+++.+.+..+...+.....+.||+|++++. +..-.+++|+. .+. .|+.-+.. ..
T Consensus 21 ~~~~~~~~~l~~~l~~~~~vviD~ETTGl~-----~~~~~IieIgav~~~~~~~g~i~~~~~f~~~v~P~~~~~i~~~~~ 95 (235)
T 3v9w_A 21 MSDNAQLTGLCDRFRGFYPVVIDVETAGFN-----AKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEAL 95 (235)
T ss_dssp --------CHHHHTTTEEEEEEEEEESSSC-----TTTBCEEEEEEEEEEECTTSCEEEEEEEEEEBCCCTTCBCCHHHH
T ss_pred ccccccccCchhcccCCcEEEEEEeCCCCC-----CCCCeEEEEEEEEEEEcCCCcccccceEEEEECCCCCCCCCHHHH
Confidence 556666777778888888999999999862 12223443331 122 12221111 00
Q ss_pred ------C-----CCc--hhHHHHHHHhhcC-------CCceEEEeehHHhHHHHHHH---hCCcc-ccccchhHhhHHHh
Q 009284 378 ------E-----DVP--DVLDSCLTRILQS-------PGILKLGYNFQCDIKQLAHS---YGELE-CFKHYEMLLDIQNV 433 (538)
Q Consensus 378 ------~-----~~p--~~ll~~Lk~lLed-------~~i~KVGhnlK~Dl~vLa~~---~Gil~-~~~~~~~ifDtmLA 433 (538)
+ ..| .+++..|.+++++ +....||||+++|+..|.+. +|+.. .+ ....++||+.+
T Consensus 96 ~i~GIt~e~~v~~~~~~~~vl~~~~~~l~~~~~~~~~~~~~lVahN~~fD~~~L~~~~~~~g~~~~p~-~~~~~~Dt~~l 174 (235)
T 3v9w_A 96 AFNGIDPNDPDRGAVSGYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERASLKRNPF-HPFATFDTAAL 174 (235)
T ss_dssp HHHCCCTTCGGGCCBCHHHHHHHHHHHHHHHHTTTTCCEEEEEETTTHHHHHHHHHHHHHTTCCCCCE-EEEEEEEHHHH
T ss_pred HHhCCCHHHHHhcCCCHHHHHHHHHHHHHHHhhhccCCCcEEEEeChHHHHHHHHHHHHHcCCCCCCC-CCCcEEEhHHH
Confidence 0 011 2245566666642 45789999999999998653 36521 00 01246799988
Q ss_pred hc--CCCCCHHHHHHHHhCCCCCcCcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 009284 434 FK--EPKGGLSGLAEKILGAGLNKTRRNSNWEQRPLSQNQLEYAALDAVVLLQIFHHVRSCSQPTD 497 (538)
Q Consensus 434 l~--~~s~gLd~LAer~LG~~L~K~e~~S~W~~rpLt~~Q~~YAAeDA~vlL~L~~~L~~rLee~~ 497 (538)
.. ..+++|+.|++++ |.+... .+.++|..||.++.+|+..|.+++++.+
T Consensus 175 a~~~~p~~~L~~l~~~~-gi~~~~--------------~~~H~Al~DA~~ta~l~~~l~~~l~~~~ 225 (235)
T 3v9w_A 175 AGLALGQTVLSKACQTA-GMDFDS--------------TQAHSALYDTERTAVLFCEIVNRWKRLG 225 (235)
T ss_dssp HHHHHSCCSHHHHHHHH-TCCCCT--------------TTTTCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhCCCCHHHHHHHc-CCCCCC--------------CCCcChHHHHHHHHHHHHHHHHHHHhcC
Confidence 43 2357999999976 543321 1245699999999999999999986644
No 13
>2p1j_A POLIII, DNA polymerase III POLC-type; structural genomics, exonuclease, PSI-2, protein structure initiative; HET: DNA; 2.50A {Thermotoga maritima MSB8}
Probab=96.40 E-value=0.035 Score=51.73 Aligned_cols=90 Identities=21% Similarity=0.131 Sum_probs=62.3
Q ss_pred HHHHHHHhhcCCCceEEEeehHHhHHHHHHH---hCCccccccchhHhhHHHhh----cCCCCCHHHHHHHHhCCCCCcC
Q 009284 384 LDSCLTRILQSPGILKLGYNFQCDIKQLAHS---YGELECFKHYEMLLDIQNVF----KEPKGGLSGLAEKILGAGLNKT 456 (538)
Q Consensus 384 ll~~Lk~lLed~~i~KVGhnlK~Dl~vLa~~---~Gil~~~~~~~~ifDtmLAl----~~~s~gLd~LAer~LG~~L~K~ 456 (538)
+...|..++.+ ...||||..+|+..|.+. +|+... ...++||+... +..+++|+.++++ +|++..
T Consensus 82 v~~~~~~~l~~--~~lv~hn~~fD~~~L~~~~~~~g~~~~---~~~~iDt~~l~~~~~~~~~~~L~~l~~~-~gi~~~-- 153 (186)
T 2p1j_A 82 VLPEFLGFLED--SIIVAHNANFDYRFLRLWIKKVMGLDW---ERPYIDTLALAKSLLKLRSYSLDSVVEK-LGLGPF-- 153 (186)
T ss_dssp HHHHHHHHSSS--CEEEETTHHHHHHHHHHHHHHHHCCCC---CCCEEEHHHHHHHHTCCSCCSHHHHHHH-TTCCST--
T ss_pred HHHHHHHHHCC--CEEEEECcHHHHHHHHHHHHHcCCCCC---CCCEEeHHHHHHHHhhcCCCCHHHHHHH-cCCCCC--
Confidence 56677778865 467999999999988653 343110 13467887663 2457999999986 575432
Q ss_pred cccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 009284 457 RRNSNWEQRPLSQNQLEYAALDAVVLLQIFHHVRSCSQP 495 (538)
Q Consensus 457 e~~S~W~~rpLt~~Q~~YAAeDA~vlL~L~~~L~~rLee 495 (538)
..+.|..||.++.+|+..+..+..+
T Consensus 154 --------------~~H~Al~Da~~t~~l~~~l~~~~~~ 178 (186)
T 2p1j_A 154 --------------RHHRALDDARVTAQVFLRFVEMMKK 178 (186)
T ss_dssp --------------TCCHHHHHHHHHHHHHHHHTTCC--
T ss_pred --------------CCcCHHHHHHHHHHHHHHHHHHHHh
Confidence 1256899999999999999877655
No 14
>1wlj_A Interferon stimulated gene 20KDA; exoribonuclease, hydrolase; HET: U5P; 1.90A {Homo sapiens} SCOP: c.55.3.5
Probab=96.40 E-value=0.013 Score=54.90 Aligned_cols=92 Identities=13% Similarity=0.178 Sum_probs=63.0
Q ss_pred HHHHHHHhhcCCCceEEEeehHHhHHHHHHHhCCccccccchhHhhHHHhh---c------CCCCCHHHHHHHHhCCCCC
Q 009284 384 LDSCLTRILQSPGILKLGYNFQCDIKQLAHSYGELECFKHYEMLLDIQNVF---K------EPKGGLSGLAEKILGAGLN 454 (538)
Q Consensus 384 ll~~Lk~lLed~~i~KVGhnlK~Dl~vLa~~~Gil~~~~~~~~ifDtmLAl---~------~~s~gLd~LAer~LG~~L~ 454 (538)
+...|..++.+ ...||||+.+|+..|...+.- ..++||+... + ..+++|+.|+++++|.+..
T Consensus 73 v~~~~~~~l~~--~~lV~hn~~fD~~~L~~~~~~-------~~~idt~~~~~~~~~~~~p~~~~~~L~~l~~~~lgi~~~ 143 (189)
T 1wlj_A 73 ARLEILQLLKG--KLVVGHDLKHDFQALKEDMSG-------YTIYDTSTDRLLWREAKLDHCRRVSLRVLSERLLHKSIQ 143 (189)
T ss_dssp HHHHHHHHHTT--SEEEESSHHHHHHHTTCCCTT-------CEEEEGGGCHHHHHHHTC-----CCHHHHHHHHTCCCCS
T ss_pred HHHHHHHHHCC--CEEEECCcHHHHHHHHHhCCC-------CceechHhhhhhhhcccCCCCCCccHHHHHHHHcCCCCC
Confidence 56677788864 578999999999998763221 2356776541 1 2579999999998897654
Q ss_pred cCcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 009284 455 KTRRNSNWEQRPLSQNQLEYAALDAVVLLQIFHHVRSCSQPTD 497 (538)
Q Consensus 455 K~e~~S~W~~rpLt~~Q~~YAAeDA~vlL~L~~~L~~rLee~~ 497 (538)
... +.+.|..||.++.+|+..+.++++..+
T Consensus 144 ~~~-------------~~H~Al~Da~ata~l~~~l~~~~~~~~ 173 (189)
T 1wlj_A 144 NSL-------------LGHSSVEDARATMELYQISQRIRARRG 173 (189)
T ss_dssp CCT-------------TCCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCC-------------CCcCcHHHHHHHHHHHHHHHHHHHHhh
Confidence 211 013388999999999998887775433
No 15
>2f96_A Ribonuclease T; RNAse, RNT, RNAse T, tRNA hydrolase, SAD, PS protein structure initiative, midwest center for structural genomics; 2.09A {Pseudomonas aeruginosa} SCOP: c.55.3.5
Probab=94.86 E-value=0.2 Score=47.80 Aligned_cols=84 Identities=15% Similarity=0.122 Sum_probs=56.0
Q ss_pred CceEEEeehHHhHHHHHHH---hCCcc-ccccchhHhhHHHhhc--CCCCCHHHHHHHHhCCCCCcCcccccCCCCCCCH
Q 009284 396 GILKLGYNFQCDIKQLAHS---YGELE-CFKHYEMLLDIQNVFK--EPKGGLSGLAEKILGAGLNKTRRNSNWEQRPLSQ 469 (538)
Q Consensus 396 ~i~KVGhnlK~Dl~vLa~~---~Gil~-~~~~~~~ifDtmLAl~--~~s~gLd~LAer~LG~~L~K~e~~S~W~~rpLt~ 469 (538)
....||||..+|+..|.+. +|+.. .+ ....++||+.... ..+++|+.++++ +|++....
T Consensus 126 ~~~lV~hn~~FD~~fL~~~~~~~g~~~~p~-~~~~~iDt~~l~~~~~~~~~L~~l~~~-~gi~~~~~------------- 190 (224)
T 2f96_A 126 RAILVGHNSSFDLGFLNAAVARTGIKRNPF-HPFSSFDTATLAGLAYGQTVLAKACQA-AGMEFDNR------------- 190 (224)
T ss_dssp EEEEEETTHHHHHHHHHHHHHHHTCCCCCE-EEEEEEEHHHHHHHHHSCCSHHHHHHH-TTCCCCTT-------------
T ss_pred CCEEEEeChhhhHHHHHHHHHHcCCCcCCc-cccceeeHHHHHHHHcCCCCHHHHHHH-cCCCcCCC-------------
Confidence 4568999999999988653 35420 00 0134679987643 235789999986 57654210
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCC
Q 009284 470 NQLEYAALDAVVLLQIFHHVRSCSQP 495 (538)
Q Consensus 470 ~Q~~YAAeDA~vlL~L~~~L~~rLee 495 (538)
+.+.|..||.++.+|+..+..++.+
T Consensus 191 -~~H~Al~Da~~ta~l~~~l~~~~~~ 215 (224)
T 2f96_A 191 -EAHSARYDTEKTAELFCGIVNRWKE 215 (224)
T ss_dssp -SCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCCChHHHHHHHHHHHHHHHHHHHH
Confidence 1234889999999999998887754
No 16
>2gui_A DNA polymerase III epsilon subunit; DNA polymerase proofreading domain, transferase; HET: DNA U5P; 1.60A {Escherichia coli} SCOP: c.55.3.5 PDB: 1j54_A* 1j53_A* 2ido_A* 2xy8_A*
Probab=94.15 E-value=0.88 Score=42.10 Aligned_cols=94 Identities=15% Similarity=0.114 Sum_probs=59.6
Q ss_pred HHHHHHHhhcCCCceEEEeehHHhHHHHHHH---hCCc-cccccchhHhhHHHhh----cCCCCCHHHHHHHHhCCCCCc
Q 009284 384 LDSCLTRILQSPGILKLGYNFQCDIKQLAHS---YGEL-ECFKHYEMLLDIQNVF----KEPKGGLSGLAEKILGAGLNK 455 (538)
Q Consensus 384 ll~~Lk~lLed~~i~KVGhnlK~Dl~vLa~~---~Gil-~~~~~~~~ifDtmLAl----~~~s~gLd~LAer~LG~~L~K 455 (538)
+...|..++.+. ..||||..+|+..|.+. +|+. +.+.....++||+... ...+++|+.|+++ +|.+...
T Consensus 85 v~~~~~~~l~~~--~lv~hn~~fD~~~L~~~~~~~g~~~p~~~~~~~~iDt~~l~~~~~p~~~~~L~~l~~~-~gi~~~~ 161 (194)
T 2gui_A 85 VADEFMDYIRGA--ELVIHNAAFDIGFMDYEFSLLKRDIPKTNTFCKVTDSLAVARKMFPGKRNSLDALCAR-YEIDNSK 161 (194)
T ss_dssp HHHHHHHHHTTS--EEEETTHHHHHHHHHHHHHHTCSCCCCGGGTSEEEEHHHHHHHHSTTSCCSHHHHHHH-TTCCCTT
T ss_pred HHHHHHHHHCCC--eEEEEchHHhHHHHHHHHHHcCCCCccccccCceeeHHHHHHHHcCCCCCCHHHHHHH-cCcCCCC
Confidence 566677788653 57899999999988652 3542 1110002467887552 2446899999986 5765421
Q ss_pred CcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhccC
Q 009284 456 TRRNSNWEQRPLSQNQLEYAALDAVVLLQIFHHVRSCSQ 494 (538)
Q Consensus 456 ~e~~S~W~~rpLt~~Q~~YAAeDA~vlL~L~~~L~~rLe 494 (538)
. ..+.|..||.++.+|+..+..+.+
T Consensus 162 ~--------------~~H~Al~Da~~ta~l~~~l~~~~~ 186 (194)
T 2gui_A 162 R--------------TLHGALLDAQILAEVYLAMTGGQT 186 (194)
T ss_dssp C--------------SSCCHHHHHHHHHHHHHHHTC---
T ss_pred C--------------CCCChHHHHHHHHHHHHHHHhccc
Confidence 0 013388999999999988865543
No 17
>1y97_A Three prime repair exonuclease 2; TREX2, hydrolase; 2.50A {Homo sapiens} SCOP: c.55.3.5
Probab=94.13 E-value=0.21 Score=47.91 Aligned_cols=93 Identities=20% Similarity=0.111 Sum_probs=61.9
Q ss_pred hHHHHHHHhhcCC--CceEEEeeh-HHhHHHHHHH---hCCccccccchhHhhHHHh----h---------c-CCCCCHH
Q 009284 383 VLDSCLTRILQSP--GILKLGYNF-QCDIKQLAHS---YGELECFKHYEMLLDIQNV----F---------K-EPKGGLS 442 (538)
Q Consensus 383 ~ll~~Lk~lLed~--~i~KVGhnl-K~Dl~vLa~~---~Gil~~~~~~~~ifDtmLA----l---------~-~~s~gLd 442 (538)
++...|..+++.- ....||||. .+|+..|.+. +|+... ....++||+.. . . ..+++|+
T Consensus 98 ~v~~~l~~fl~~~~~~~~lVahN~~~FD~~fL~~~~~~~g~~~~--~~~~~iDt~~l~~~~~~~~~p~~~~p~~~~~~L~ 175 (238)
T 1y97_A 98 AVVRTLQAFLSRQAGPICLVAHNGFDYDFPLLCAELRRLGARLP--RDTVCLDTLPALRGLDRAHSHGTRARGRQGYSLG 175 (238)
T ss_dssp HHHHHHHHHHTTSCSSEEEEETTTTTTHHHHHHHHHHHHTCCCC--TTCEEEEHHHHHHHHHHHC----------CCSHH
T ss_pred HHHHHHHHHHHhCCCCCEEEecCchhhhHHHHHHHHHHcCCCCC--CCCEEEEHHHHHHHHHhccCccccCCCCCCCCHH
Confidence 4556778888762 256799999 9999888652 354110 01236788765 2 1 2579999
Q ss_pred HHHHHHhCCCCCcCcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcc
Q 009284 443 GLAEKILGAGLNKTRRNSNWEQRPLSQNQLEYAALDAVVLLQIFHHVRSCS 493 (538)
Q Consensus 443 ~LAer~LG~~L~K~e~~S~W~~rpLt~~Q~~YAAeDA~vlL~L~~~L~~rL 493 (538)
.++++++|.+.. ..+.|-.||.++.+|+..+.+++
T Consensus 176 ~l~~~~~gi~~~----------------~~H~Al~Da~~ta~l~~~l~~~~ 210 (238)
T 1y97_A 176 SLFHRYFRAEPS----------------AAHSAEGDVHTLLLIFLHRAAEL 210 (238)
T ss_dssp HHHHHHHSSCCC-------------------CHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHhCCCCc----------------cCccHHHHHHHHHHHHHHHHHHH
Confidence 999988886532 13568899999999999887654
No 18
>3mxm_B Three prime repair exonuclease 1; RNAse H-like fold, polyproline type II helix, hydrolase-DNA; HET: DNA; 1.75A {Mus musculus} SCOP: c.55.3.5 PDB: 3mxj_B 2ioc_B 3mxi_B* 3b6o_A* 2o4g_A* 3b6p_A* 2o4i_A 2oa8_A
Probab=93.20 E-value=0.22 Score=48.56 Aligned_cols=94 Identities=16% Similarity=0.077 Sum_probs=62.7
Q ss_pred hHHHHHHHhhcC--CCceEEEeeh-HHhHHHHHHH---hCCccccccchhHhhHHHhhc-------------CCCCCHHH
Q 009284 383 VLDSCLTRILQS--PGILKLGYNF-QCDIKQLAHS---YGELECFKHYEMLLDIQNVFK-------------EPKGGLSG 443 (538)
Q Consensus 383 ~ll~~Lk~lLed--~~i~KVGhnl-K~Dl~vLa~~---~Gil~~~~~~~~ifDtmLAl~-------------~~s~gLd~ 443 (538)
++...|..++.+ +....||||. .+|+..|.+. +|+...+ ....++|++.... ..+++|+.
T Consensus 103 ev~~~~~~fl~~~~~~~~lVaHNav~FD~~fL~~~~~r~g~~~~~-~~~~~iDtl~l~r~l~~~~~p~~~~~~~~~~L~~ 181 (242)
T 3mxm_B 103 NLAILLRAFLQRQPQPCCLVAHNGDRYDFPLLQTELARLSTPSPL-DGTFCVDSIAALKALEQASSPSGNGSRKSYSLGS 181 (242)
T ss_dssp HHHHHHHHHHHTSCSSEEEEETTTTTTHHHHHHHHHHTSSSCCTT-TTCEEEEHHHHHHHHHHHHCC------CCCSHHH
T ss_pred HHHHHHHHHHhcCCCCCEEEEcCChHhhHHHHHHHHHHcCCCCCc-cCCeEeehHHHHHHHHhhcCccccCCCCCcCHHH
Confidence 566677778876 2256799995 9999988753 4542100 0113568876521 35799999
Q ss_pred HHHHHhCCCCCcCcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcc
Q 009284 444 LAEKILGAGLNKTRRNSNWEQRPLSQNQLEYAALDAVVLLQIFHHVRSCS 493 (538)
Q Consensus 444 LAer~LG~~L~K~e~~S~W~~rpLt~~Q~~YAAeDA~vlL~L~~~L~~rL 493 (538)
|+++++|++... .+-|-.||.++.+|+..+..++
T Consensus 182 l~~~~~gi~~~~----------------~H~Al~Da~ata~l~~~~~~~~ 215 (242)
T 3mxm_B 182 IYTRLYWQAPTD----------------SHTAEGDDLTLLSICQWKPQAL 215 (242)
T ss_dssp HHHHHHSSCCSS----------------TTSHHHHHHHHHHHHTSSHHHH
T ss_pred HHHHHhCCCCCC----------------CcChHHHHHHHHHHHHHHHHHH
Confidence 999999976531 2348899999999988665543
No 19
>2qxf_A Exodeoxyribonuclease I; alpha-beta domain, DNAQ superfamily, SH3-like domain, produc structure, DNA damage, DNA repair, exonuclease; HET: TMP; 1.50A {Escherichia coli} SCOP: c.55.3.5 PDB: 1fxx_A* 3c94_A 3c95_A 3hl8_A* 3hp9_A*
Probab=86.56 E-value=2.6 Score=45.46 Aligned_cols=93 Identities=16% Similarity=0.149 Sum_probs=56.5
Q ss_pred hHHHHHHHhhcCCCceEEEee-hHHhHHHHHHH---hCCccccccc---hhHhhHHHh----h--------------cCC
Q 009284 383 VLDSCLTRILQSPGILKLGYN-FQCDIKQLAHS---YGELECFKHY---EMLLDIQNV----F--------------KEP 437 (538)
Q Consensus 383 ~ll~~Lk~lLed~~i~KVGhn-lK~Dl~vLa~~---~Gil~~~~~~---~~ifDtmLA----l--------------~~~ 437 (538)
++...+..++..+....|||| +.+|..+|.+. +|+....... ...+||+-. . ...
T Consensus 83 evl~~f~~~l~~~~~~lVaHNs~~FD~~fL~~~~~r~g~~~~~~~w~~~~~~iDtl~l~r~~~~~~~~~~~wP~~~~~~~ 162 (482)
T 2qxf_A 83 AFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLP 162 (482)
T ss_dssp HHHHHHHHHHTSTTEEEEESSTTTTHHHHHHHHHHHTTSCSSGGGTGGGCEEEEHHHHHHHHHHHCCTTSCCCBCTTSSB
T ss_pred HHHHHHHHHHcCCCCEEEEECCHHHHHHHHHHHHHHhCCCccccccccCCceeeHHHHHHHHHHhCcccccCcccccCCC
Confidence 355667778875567789999 99999887642 3331100000 223455433 1 113
Q ss_pred CCCHHHHHHHHhCCCCCcCcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhc
Q 009284 438 KGGLSGLAEKILGAGLNKTRRNSNWEQRPLSQNQLEYAALDAVVLLQIFHHVRSC 492 (538)
Q Consensus 438 s~gLd~LAer~LG~~L~K~e~~S~W~~rpLt~~Q~~YAAeDA~vlL~L~~~L~~r 492 (538)
+++|+.|++. +|++.. ..+-|-.||.++.+|+..+..+
T Consensus 163 s~kL~~L~~~-~Gi~~~----------------~aHrAL~DA~aTa~l~~~l~~~ 200 (482)
T 2qxf_A 163 SFRLEHLTKA-NGIEHS----------------NAHDAMADVYATIAMAKLVKTR 200 (482)
T ss_dssp CCCHHHHHHH-TTCCCC-------------------CTTHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHH-cCCCCC----------------CCCCHHHHHHHHHHHHHHHHHh
Confidence 6789999875 465431 1244778999999999888654
No 20
>3u3y_B Three prime repair exonuclease 1; RNAse H fold, 3' exonuclease, homodimer, hydrolase-DNA compl; HET: BU1; 2.28A {Mus musculus} PDB: 3u6f_B*
Probab=84.43 E-value=1.4 Score=44.87 Aligned_cols=94 Identities=14% Similarity=0.060 Sum_probs=62.4
Q ss_pred hHHHHHHHhhcC--CCceEEEee-hHHhHHHHHHH---hCCccccccchhHhhHHHhh----c---------CCCCCHHH
Q 009284 383 VLDSCLTRILQS--PGILKLGYN-FQCDIKQLAHS---YGELECFKHYEMLLDIQNVF----K---------EPKGGLSG 443 (538)
Q Consensus 383 ~ll~~Lk~lLed--~~i~KVGhn-lK~Dl~vLa~~---~Gil~~~~~~~~ifDtmLAl----~---------~~s~gLd~ 443 (538)
++...|..++.+ +....|||| ..+|+..|.+. +|+...+ ....++|++..+ . ..+++|++
T Consensus 103 ev~~~l~~fL~~~~~~~vLVAHNga~FD~~FL~~el~r~Gl~~~~-~~~~~iDTL~l~r~L~r~~~P~~~~~~~~~~L~~ 181 (314)
T 3u3y_B 103 NLAILLRAFLQRQPQPCCLVAHNGDRYDFPLLQTELARLSTPSPL-DGTFCVDSIAALKALEQASSPSGNGSRKSYSLGS 181 (314)
T ss_dssp HHHHHHHHHHHTSCSSEEEEETTTTTTHHHHHHHHHHTSSSCCTT-TTCEEEEHHHHHHHHHTTC-------CCCCSHHH
T ss_pred HHHHHHHHHHhcCCCCcEEEEeCcHHHHHHHHHHHHHHcCCCCCC-CCceEEeHHHHHHHHHHHhCccccccCCCCCHHH
Confidence 556677777876 225779999 99999988753 3542100 001245776531 1 26799999
Q ss_pred HHHHHhCCCCCcCcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcc
Q 009284 444 LAEKILGAGLNKTRRNSNWEQRPLSQNQLEYAALDAVVLLQIFHHVRSCS 493 (538)
Q Consensus 444 LAer~LG~~L~K~e~~S~W~~rpLt~~Q~~YAAeDA~vlL~L~~~L~~rL 493 (538)
|+++++|++... .+-|-.||.++.+|+..+..++
T Consensus 182 L~~~l~gi~~~~----------------aHrAl~DA~ata~lf~~l~~~~ 215 (314)
T 3u3y_B 182 IYTRLYWQAPTD----------------SHTAEGHVLTLLSICQWKPQAL 215 (314)
T ss_dssp HHHHHHSSCCSC----------------SSSHHHHHHHHHHHHHSSHHHH
T ss_pred HHHHhcCCCCCC----------------CCCHHHHHHHHHHHHHHHHHHH
Confidence 999988876431 1338899999999988776554
No 21
>1qht_A Protein (DNA polymerase); archaea, hyperthermostable, family B polymer alpha family polymerase, transferase; 2.10A {Thermococcus SP} SCOP: c.55.3.5 e.8.1.1 PDB: 1tgo_A 2xhb_A* 2vwj_A* 2vwk_A* 1wns_A* 1wn7_A 1qqc_A* 4ahc_A* 4ail_C* 3a2f_A* 2jgu_A* 1d5a_A
Probab=64.52 E-value=51 Score=37.32 Aligned_cols=154 Identities=16% Similarity=0.183 Sum_probs=83.4
Q ss_pred cCCeEEEEeeeecCCccCCcCCceeEEEEEe--CCeEEEEEcCcc-----c-CCCchhHHHHHHHhhc--CCCceEEEee
Q 009284 334 GCKVVGIDCEWKPNYVKGCKMNKVSIMQIAS--DEMVFIFDLIKL-----A-EDVPDVLDSCLTRILQ--SPGILKLGYN 403 (538)
Q Consensus 334 ~a~~IgfDtE~~~l~~~~~~~~~VsLiQLAt--~~~a~~IdL~~l-----~-~~~p~~ll~~Lk~lLe--d~~i~KVGhn 403 (538)
.-.+++||.|+.+.. ++.+..-.+++|+. .+...++-.... . .....+++..+..++. ||+ ..+|||
T Consensus 134 ~l~ilsfDIEt~~~~--~p~~~~d~Ii~Is~~~~~~~~~~t~~~i~~~~v~~~~~E~~LL~~f~~~i~~~dPD-iivGyN 210 (775)
T 1qht_A 134 ELTMLAFAIATLYHE--GEEFGTGPILMISYADGSEARVITWKKIDLPYVDVVSTEKEMIKRFLRVVREKDPD-VLITYN 210 (775)
T ss_dssp CCCEEEEEEEECCCT--TCCTTCSCEEEEEEECSSCEEEEESSCCCCSSEEECSCHHHHHHHHHHHHHHHCCS-EEEESS
T ss_pred CcEEEEEEEEEcCCC--CCCCCCCcEEEEEEEecCCCeeEeeccccccceEEcCCHHHHHHHHHHHHHhcCCC-EEEEeC
Confidence 457899999998641 12222334555553 222222211110 0 0111234555555554 465 468999
Q ss_pred hH-HhHHHHHH---HhCCccccc-----------------c--chhHhhHHHhhc----CCCCCHHHHHHHHhCCCCCc-
Q 009284 404 FQ-CDIKQLAH---SYGELECFK-----------------H--YEMLLDIQNVFK----EPKGGLSGLAEKILGAGLNK- 455 (538)
Q Consensus 404 lK-~Dl~vLa~---~~Gil~~~~-----------------~--~~~ifDtmLAl~----~~s~gLd~LAer~LG~~L~K- 455 (538)
.. +|+-.|.+ .+|+...+. . -...+|++..+. ..+++|+.+++.+||.....
T Consensus 211 ~~~FDlpyL~~Ra~~~gi~~~lgR~~~~~~~~~~g~~~~~~i~Gr~~lDl~~~~k~~~~l~sysL~~Va~~~Lg~~K~dv 290 (775)
T 1qht_A 211 GDNFDFAYLKKRCEELGIKFTLGRDGSEPKIQRMGDRFAVEVKGRIHFDLYPVIRRTINLPTYTLEAVYEAVFGKPKEKV 290 (775)
T ss_dssp TTTTHHHHHHHHHHHTTCCCCCSTTSCCCEEEEETTEEEEECTTSEEEEHHHHHHHHSCCSCCCHHHHHHHHHCCCCCCC
T ss_pred CCCccHHHHHHHHHHcCCCcccccCCCcCceeecCceeeEEecCeEEEEHHHHHHHhcCcCcCCHHHHHHHHhCCCCCcc
Confidence 85 47765532 245421100 0 012558876642 45899999999999974321
Q ss_pred -Ccccc-cCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 009284 456 -TRRNS-NWEQRPLSQNQLEYAALDAVVLLQIFHHVR 490 (538)
Q Consensus 456 -~e~~S-~W~~rpLt~~Q~~YAAeDA~vlL~L~~~L~ 490 (538)
++++. .|...+-...-++|...||..+++|+..+.
T Consensus 291 ~~~~i~~~~~~~~~l~~l~~Y~~~Da~lt~~L~~~~~ 327 (775)
T 1qht_A 291 YAEEIAQAWESGEGLERVARYSMEDAKVTYELGREFF 327 (775)
T ss_dssp CHHHHHHHHTTTCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHhhh
Confidence 11222 354433124458999999999999977653
No 22
>1w0h_A 3'-5' exonuclease ERI1; nuclease domain, hydrolase; HET: AMP; 1.59A {Homo sapiens} SCOP: c.55.3.5
Probab=64.41 E-value=8.5 Score=35.46 Aligned_cols=95 Identities=13% Similarity=0.029 Sum_probs=61.0
Q ss_pred HHHHHHHhhcCCC-----ceEEEeehHHhHH-HHHHH---hCCccccccchhHhhHHHhhc------CCCCCHHHHHHHH
Q 009284 384 LDSCLTRILQSPG-----ILKLGYNFQCDIK-QLAHS---YGELECFKHYEMLLDIQNVFK------EPKGGLSGLAEKI 448 (538)
Q Consensus 384 ll~~Lk~lLed~~-----i~KVGhnlK~Dl~-vLa~~---~Gil~~~~~~~~ifDtmLAl~------~~s~gLd~LAer~ 448 (538)
+...|..++.+.. ...||||..+|+. .|.+. +|+... .....++|++..+. ..+++|+.++++
T Consensus 88 v~~~~~~~l~~~~~~~~~~~lv~hn~~fD~~~~L~~~~~~~~~~~p-~~~~~~~dt~~l~~~~~~~~~~~~~L~~l~~~- 165 (204)
T 1w0h_A 88 VLKKVIDWMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYP-PFAKKWINIRKSYGNFYKVPRSQTKLTIMLEK- 165 (204)
T ss_dssp HHHHHHHHHHHTTBTTTBCEEEEESSTTTTHHHHHHHHHHHTCCCC-GGGSEEEEHHHHHHHHHTCCGGGCSHHHHHHH-
T ss_pred HHHHHHHHHHhcCCCCCCcEEEEEECcchHHHHHHHHHHHhCCCCc-ccccceEEHHHHHHHHhCCCCccchHHHHHHH-
Confidence 4556666776532 3579999999996 77642 454210 00114679877632 235899999977
Q ss_pred hCCCCCcCcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 009284 449 LGAGLNKTRRNSNWEQRPLSQNQLEYAALDAVVLLQIFHHVRSCSQP 495 (538)
Q Consensus 449 LG~~L~K~e~~S~W~~rpLt~~Q~~YAAeDA~vlL~L~~~L~~rLee 495 (538)
+|.+... . .+-|..||.++.+|+..+..+...
T Consensus 166 ~gi~~~~--~-------------~H~Al~Da~~ta~l~~~l~~~~~~ 197 (204)
T 1w0h_A 166 LGMDYDG--R-------------PHCGLDDSKNIARIAVRMLQDGCE 197 (204)
T ss_dssp TTCCCCS--C-------------TTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred cCCCCCC--C-------------ccCcHHHHHHHHHHHHHHHHCCCe
Confidence 5764320 0 133889999999999998877543
No 23
>1zbh_A 3'-5' exonuclease ERI1; histone mRNA 3'-END-specific recognition, structures of 3'- exonuclease and ITS RNA complex, hydrolase/RNA complex; HET: AMP; 3.00A {Homo sapiens}
Probab=54.04 E-value=36 Score=33.68 Aligned_cols=96 Identities=15% Similarity=0.081 Sum_probs=62.8
Q ss_pred HHHHHHHhhcCC-----CceEEEeehHHhHH-HHHHH---hCCc-cccccchhHhhHHHhhc----CC--CCCHHHHHHH
Q 009284 384 LDSCLTRILQSP-----GILKLGYNFQCDIK-QLAHS---YGEL-ECFKHYEMLLDIQNVFK----EP--KGGLSGLAEK 447 (538)
Q Consensus 384 ll~~Lk~lLed~-----~i~KVGhnlK~Dl~-vLa~~---~Gil-~~~~~~~~ifDtmLAl~----~~--s~gLd~LAer 447 (538)
++..|..++.+. ....||||..+|+. .|.+. +|+. +.+ ...++|++..+. .. +++|+.++++
T Consensus 156 vl~~f~~~l~~~~~~~~~~~lVahn~~fD~~~fL~~~~~~~g~~~p~~--~~~~iDt~~l~~~~~~~~~~~~~L~~l~~~ 233 (299)
T 1zbh_A 156 VLKKVIDLMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPF--AKKWINIRKSYGNFYKVPRSQTKLTIMLEK 233 (299)
T ss_dssp HHHHHHHHHHHTTBTTTBCEEEEESSSHHHHTHHHHHHHHTTBCCCGG--GSEEEEHHHHHHHHHTCCGGGCSHHHHHHH
T ss_pred HHHHHHHHHhhcccCCCCcEEEEEeCHHHHHHHHHHHHHHcCCCCCcc--cchHHHHHHHHHHHhCCCCCCccHHHHHHH
Confidence 556666777654 14679999999998 87653 4542 100 124678876532 12 3899999986
Q ss_pred HhCCCCCcCcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 009284 448 ILGAGLNKTRRNSNWEQRPLSQNQLEYAALDAVVLLQIFHHVRSCSQPTD 497 (538)
Q Consensus 448 ~LG~~L~K~e~~S~W~~rpLt~~Q~~YAAeDA~vlL~L~~~L~~rLee~~ 497 (538)
+|++... . .+-|-.||.++.+|+..+..+.....
T Consensus 234 -~gi~~~g--~-------------~H~Al~DA~ata~l~~~l~~~~~~~~ 267 (299)
T 1zbh_A 234 -LGMDYDG--R-------------PNCGLDDSKNIARIAVRMLQDGCELR 267 (299)
T ss_dssp -TTCCCCS--C-------------TTCHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred -cCCCCCC--C-------------CCChHHHHHHHHHHHHHHHHhCCcCC
Confidence 5764320 0 13388999999999999988765433
No 24
>1s5j_A DNA polymerase I; replication, disulfide bonds, transferase; HET: DNA; 2.40A {Sulfolobus solfataricus} SCOP: c.55.3.5 e.8.1.1
Probab=51.42 E-value=1.4e+02 Score=34.08 Aligned_cols=99 Identities=19% Similarity=0.183 Sum_probs=60.5
Q ss_pred hHHHHHHHhhcCCCceEEEeehH-HhHHHHHH---HhCCcc---ccc---------cchhHhhHHHhhc-----------
Q 009284 383 VLDSCLTRILQSPGILKLGYNFQ-CDIKQLAH---SYGELE---CFK---------HYEMLLDIQNVFK----------- 435 (538)
Q Consensus 383 ~ll~~Lk~lLed~~i~KVGhnlK-~Dl~vLa~---~~Gil~---~~~---------~~~~ifDtmLAl~----------- 435 (538)
+++..+..++.+.. ..+|||.. +|+-.|.. .+|+.. .+. .....+|++..+.
T Consensus 259 ~LL~~f~~~i~~~d-iivgyN~~~FDlPyL~~Ra~~lgi~~~~~p~~~~gr~~~~i~gr~~~Dl~~~~~~~~~~~y~f~~ 337 (847)
T 1s5j_A 259 ELLGRFFDILLEYP-IVLTFNGDDFDLPYIYFRALKLGYFPEEIPIDVAGKDEAKYLAGLHIDLYKFFFNKAVRNYAFEG 337 (847)
T ss_dssp HHHHHHHHHHTTCS-EEEESSTTTTHHHHHHHHHHTTTCCGGGCSEECCSTTCCEETTSEEEEHHHHHTSHHHHHHTSTT
T ss_pred HHHHHHHHHhccCC-EEEEeCCCCchHHHHHHHHHHcCCCcccCCeeecCCCceEeccEEEeehHHHHhhhhhhhhcccc
Confidence 47778888888875 68999985 58776543 245511 010 0122346654421
Q ss_pred -CCCCCHHHHHHHHhCCCCCcCccc-ccCCCCCCCHHHHHHHHHHHHHHHHHH
Q 009284 436 -EPKGGLSGLAEKILGAGLNKTRRN-SNWEQRPLSQNQLEYAALDAVVLLQIF 486 (538)
Q Consensus 436 -~~s~gLd~LAer~LG~~L~K~e~~-S~W~~rpLt~~Q~~YAAeDA~vlL~L~ 486 (538)
..+++|+.+|+.+||..-. .+ ..|.... ...-.+|.-.||..+++|+
T Consensus 338 kl~sysL~~Va~~~Lg~~K~---dv~~~i~~~~-~~~l~~Ycl~Da~lt~~L~ 386 (847)
T 1s5j_A 338 KYNEYNLDAVAKALLGTSKV---KVDTLISFLD-VEKLIEYNFRDAEITLQLT 386 (847)
T ss_dssp CCSSCSHHHHHHHHHCCCCC-----SSCTTTCC-HHHHHHHHHHHHHHHHHTT
T ss_pred ccccccHHHHHHHHhCCCCc---chhHhhhhcc-HHHHHHHHHHHHHHHHHHH
Confidence 1589999999999996421 11 1222111 2334799999999999985
No 25
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=50.59 E-value=12 Score=30.81 Aligned_cols=47 Identities=11% Similarity=0.065 Sum_probs=41.3
Q ss_pred cCCccchhHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccccccH
Q 009284 113 TVNSADSTQAKEIAAYLFLDITGGFVDHDEKLMVKILEAFDVRLTDI 159 (538)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~e~f~~~~~~~ 159 (538)
.-+|+++-+.-.+....+-.|-.|........+.+|++.||++++++
T Consensus 41 gltq~elA~~~gis~~~is~iE~G~~~ps~~~l~~ia~~l~v~~~~l 87 (99)
T 3g5g_A 41 GMTQEDLAYKSNLDRTYISGIERNSRNLTIKSLELIMKGLEVSDVVF 87 (99)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHTTCSCCBHHHHHHHHHHTTCCHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHCCCCCCCHHHHHHHHHHHCcCHHHH
Confidence 44688888888888899999999998888999999999999988776
No 26
>2igi_A Oligoribonuclease; RNAse, exoribonuclease, exonuclease, hydrolase, mRNA decay; 1.70A {Escherichia coli} SCOP: c.55.3.5 PDB: 1yta_A 1j9a_A
Probab=47.93 E-value=53 Score=29.40 Aligned_cols=90 Identities=17% Similarity=0.062 Sum_probs=49.7
Q ss_pred HHHHHHHhhcCC----CceEEEeehHHhHHHHHHHhCCccccccchhHhhHHHhhcCCCCCHHHHHHHHhCCCCCcCccc
Q 009284 384 LDSCLTRILQSP----GILKLGYNFQCDIKQLAHSYGELECFKHYEMLLDIQNVFKEPKGGLSGLAEKILGAGLNKTRRN 459 (538)
Q Consensus 384 ll~~Lk~lLed~----~i~KVGhnlK~Dl~vLa~~~Gil~~~~~~~~ifDtmLAl~~~s~gLd~LAer~LG~~L~K~e~~ 459 (538)
+...|..++.+- ....||||+.+|+..|.+.+.-.... -....+|+. ++..++.+++.. +.+
T Consensus 84 v~~~~~~~l~~~~~~~~~~lv~hn~~fD~~fL~~~~~~~~~~-~~~~~~d~~--------tl~~l~~~~~p~-~~~---- 149 (180)
T 2igi_A 84 AELATLEFLKQWVPAGKSPICGNSIGQDRRFLFKYMPELEAY-FHYRYLDVS--------TLKELARRWKPE-ILD---- 149 (180)
T ss_dssp HHHHHHHHHTTTSCTTTSCEEESSHHHHHHHHHHHCHHHHHH-SCSCEEETH--------HHHHHHHHHCGG-GGG----
T ss_pred HHHHHHHHHHHhCCCCCceEEecCHHHHHHHHHHHHHHhccC-CCcceeeHH--------HHHHHHHHhChH-hhh----
Confidence 556677777751 35689999999999998632110000 001123411 233455554321 000
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcc
Q 009284 460 SNWEQRPLSQNQLEYAALDAVVLLQIFHHVRSCS 493 (538)
Q Consensus 460 S~W~~rpLt~~Q~~YAAeDA~vlL~L~~~L~~rL 493 (538)
+. +. ...+-|-.||.++.+|+..+..++
T Consensus 150 -~i---~~--~~~H~Al~Da~ata~l~~~~~~~~ 177 (180)
T 2igi_A 150 -GF---TK--QGTHQAMDDIRESVAELAYYREHF 177 (180)
T ss_dssp -GS---CC--CCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred -CC---CC--cCCcCcHHHHHHHHHHHHHHHHHh
Confidence 11 11 113458899999999999988776
No 27
>1rxw_A Flap structure-specific endonuclease; helical clamp, helix-3 turn-helix, hydrophobic wedge, 3' FLA site, hydrolase-DNA complex; 2.00A {Archaeoglobus fulgidus} SCOP: a.60.7.1 c.120.1.2 PDB: 1rxv_A
Probab=47.67 E-value=6.8 Score=39.84 Aligned_cols=90 Identities=13% Similarity=-0.029 Sum_probs=58.8
Q ss_pred HHHHHHhhhccccchHHHHHHHhccchH--------HHHHHHHhcC-chHHHHHHhhhhchH--HHHHHhhcchhHHHHH
Q 009284 197 AVSLLEHFSIRQSGESFLLKMIQNKEFK--------AAEKWATFMG-KPILLKRLAEKACWD--IAEAKTKGDKRLLEYL 265 (538)
Q Consensus 197 ~~~li~~f~~~~~~~~~l~~~~~~~~~~--------~a~~~~~~~~-~~~~~~~l~~k~~wd--~a~~~~~~D~~l~~~l 265 (538)
.-.+.++|.+....+..+--|+-+...+ .|.+|...+| ...+++.+.+ .|+ +.++++..|+++. .+
T Consensus 211 ~~~v~~~~gl~~~q~id~~~L~GsD~ipGv~GiG~KtA~kLl~~~gsle~i~~~~~~--~l~~~~~l~~i~~~~~v~-~~ 287 (336)
T 1rxw_A 211 LESNLKRLGLTREQLIDIAILVGTDYNEGVKGVGVKKALNYIKTYGDIFRALKALKV--NIDHVEEIRNFFLNPPVT-DD 287 (336)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHCBTTBCCCTTCCHHHHHHHHHHHSSHHHHHHHHTC------CHHHHHHHHSCCCC-CC
T ss_pred HHHHHHHcCCCHHHHHHHHhhcCCCCCCCCCCcCHHHHHHHHHHcCCHHHHHHhCCC--CCccHHHHHHHHhCCCCC-Cc
Confidence 4456677777655444444555432222 6677777666 3344555432 333 3677888888877 36
Q ss_pred HHHhhccCCHHHHHHHH-HHcCCcc
Q 009284 266 VYLAMEAGYSEKVDELC-ERYSLEG 289 (538)
Q Consensus 266 v~L~~~~~d~~~L~~l~-~ryef~s 289 (538)
.++.+.+||.+++.+++ +++||+.
T Consensus 288 ~~~~~~~~d~~~l~~~~~~~~~f~~ 312 (336)
T 1rxw_A 288 YRIEFREPDFEKAIEFLCEEHDFSR 312 (336)
T ss_dssp CCCCCCCCCHHHHHHHHTTTTCCCH
T ss_pred ccccCCCCCHHHHHHHHHHccCCCH
Confidence 77888999999999999 9999974
No 28
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=46.77 E-value=18 Score=27.80 Aligned_cols=54 Identities=11% Similarity=0.068 Sum_probs=42.9
Q ss_pred HHHHhhhcccCCccchhHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccccccH
Q 009284 104 SALRRHQKTTVNSADSTQAKEIAAYLFLDITGGFVDHDEKLMVKILEAFDVRLTDI 159 (538)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~e~f~~~~~~~ 159 (538)
..+|.-.. -+++++-+.-.+..+.+-.+..|...-....+.++++.||+++.++
T Consensus 8 k~~r~~~g--lsq~~lA~~~gis~~~i~~~e~g~~~p~~~~l~~ia~~l~v~~~~l 61 (77)
T 2k9q_A 8 KVERIRLS--LTAKSVAEEMGISRQQLCNIEQSETAPVVVKYIAFLRSKGVDLNAL 61 (77)
T ss_dssp HHHHHHHT--CCHHHHHHHHTSCHHHHHHHHTCCSCCHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHHcC--CCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCcCHHHH
Confidence 34444333 4588888888888899999999987767788999999999988775
No 29
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=45.01 E-value=22 Score=26.84 Aligned_cols=54 Identities=11% Similarity=0.064 Sum_probs=43.4
Q ss_pred HHHHhhhcccCCccchhHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccccccH
Q 009284 104 SALRRHQKTTVNSADSTQAKEIAAYLFLDITGGFVDHDEKLMVKILEAFDVRLTDI 159 (538)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~e~f~~~~~~~ 159 (538)
..+|.-. .-+++|+-+.-.+....+-.+..|........+.++++.||+++.++
T Consensus 14 ~~~r~~~--glsq~~lA~~~gis~~~is~~e~g~~~~~~~~l~~ia~~l~v~~~~l 67 (73)
T 3omt_A 14 KSVLAEK--GKTNLWLTETLDKNKTTVSKWCTNDVQPSLETLFDIAEALNVDVREL 67 (73)
T ss_dssp HHHHHHH--TCCHHHHHHHTTCCHHHHHHHHTTSSCCCHHHHHHHHHHHTSCGGGG
T ss_pred HHHHHHc--CCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHCcCHHHH
Confidence 3444423 33588888888888899999999988878999999999999988775
No 30
>1zbu_A ERI-1 homolog, 3'-5' exonuclease ERI1; hydrolase; HET: AMP; 3.00A {Homo sapiens}
Probab=42.88 E-value=59 Score=33.19 Aligned_cols=95 Identities=15% Similarity=0.081 Sum_probs=62.1
Q ss_pred HHHHHHHhhcCC-----CceEEEeehHHhHH-HHHHH---hCCc-cccccchhHhhHHHhhc----CC--CCCHHHHHHH
Q 009284 384 LDSCLTRILQSP-----GILKLGYNFQCDIK-QLAHS---YGEL-ECFKHYEMLLDIQNVFK----EP--KGGLSGLAEK 447 (538)
Q Consensus 384 ll~~Lk~lLed~-----~i~KVGhnlK~Dl~-vLa~~---~Gil-~~~~~~~~ifDtmLAl~----~~--s~gLd~LAer 447 (538)
++..|..++.+. ....||||..+|+. .|... +|+. +.+ ...++|++..+. .. +++|+.|+++
T Consensus 206 Vl~~f~~~l~~~~~~~~~~~lVaHNa~FD~~~fL~~~~~~~g~~~p~~--~~~~iDt~~l~~~~~~~~~~~~~L~~l~~~ 283 (349)
T 1zbu_A 206 VLKKVIDLMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPF--AKKWINIRKSYGNFYKVPRSQTKLTIMLEK 283 (349)
T ss_dssp HHHHHHHHHHHTTBTTTBCEEEEESSSHHHHTHHHHHHHHTTBCCCGG--GSEEEEHHHHHHHHHTCCGGGGSHHHHHHH
T ss_pred HHHHHHHHHhcccccCCCcEEEEECcHhhHHHHHHHHHHHhCCCCccc--cchHHHHHHHHHHHhcCCCCCCCHHHHHHH
Confidence 555666777653 14679999999998 87643 4541 100 124678876642 12 3899999986
Q ss_pred HhCCCCCcCcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 009284 448 ILGAGLNKTRRNSNWEQRPLSQNQLEYAALDAVVLLQIFHHVRSCSQPT 496 (538)
Q Consensus 448 ~LG~~L~K~e~~S~W~~rpLt~~Q~~YAAeDA~vlL~L~~~L~~rLee~ 496 (538)
+|++... . .+-|-.||.++.+|+..+..+....
T Consensus 284 -~gi~~~g--~-------------~HrAl~DA~ata~ll~~ll~~~~~~ 316 (349)
T 1zbu_A 284 -LGMDYDG--R-------------PHCGLDDSKNIARIAVRMLQDGCEL 316 (349)
T ss_dssp -TTCCCCS--C-------------TTCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred -cCCCCCC--C-------------CCCHHHHHHHHHHHHHHHHHhcccC
Confidence 5764320 0 1338899999999999988776543
No 31
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=42.06 E-value=22 Score=27.66 Aligned_cols=59 Identities=12% Similarity=0.220 Sum_probs=45.4
Q ss_pred hhHHHHHHHHhhhcccCCccchhHHHHHHHHHHHHHhcC-CCCChhHHHHHHHHHhccccccH
Q 009284 98 FSHLIISALRRHQKTTVNSADSTQAKEIAAYLFLDITGG-FVDHDEKLMVKILEAFDVRLTDI 159 (538)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~r~~~~l~e~f~~~~~~~ 159 (538)
|.+= |..+|.-.. -+++|+-+.-.+....+-.+-.| ........+.+|++.||+++.++
T Consensus 11 ~~~~-ik~~R~~~g--ltq~elA~~~gis~~~is~~E~G~~~~p~~~~l~~ia~~l~v~~~~l 70 (78)
T 3qq6_A 11 IGQR-IKQYRKEKG--YSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTL 70 (78)
T ss_dssp HHHH-HHHHHHHTT--CCHHHHHHHHTCCHHHHHHHHTTSCCCCBHHHHHHHHHHHTCCHHHH
T ss_pred ccHH-HHHHHHHcC--CCHHHHHHHHCcCHHHHHHHHcCCCCCCCHHHHHHHHHHHCcCHHHH
Confidence 4443 334555333 45888888888889999999999 67778899999999999987765
No 32
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=41.74 E-value=78 Score=27.40 Aligned_cols=43 Identities=16% Similarity=0.206 Sum_probs=31.7
Q ss_pred HHHHHhhchhhHHHHHHHhhhccccchHHHHHHHhccchHHHHHHHHhcCchHH
Q 009284 185 IFAMIDSQSYMTAVSLLEHFSIRQSGESFLLKMIQNKEFKAAEKWATFMGKPIL 238 (538)
Q Consensus 185 i~~~~~~~~~~~~~~li~~f~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~ 238 (538)
|-+.+++.....+|+||+-- .+|--|+|+.|-.+..-.-.|.+
T Consensus 29 IAdwL~~~~~~E~v~lIR~s-----------SLmNrG~Yq~Al~l~~~~c~pdl 71 (116)
T 2p58_C 29 IAEWLHLKGEEEAVQLIRLS-----------SLMNRGDYASALQQGNKLAYPDL 71 (116)
T ss_dssp HHHHHHHTTCHHHHHHHHHH-----------HHHHTTCHHHHHHHHTTSCCGGG
T ss_pred HHHHHHhCCcHHHHHHHHHH-----------HHHcchhHHHHHHhcCCCCCchH
Confidence 34445553337899999854 45677999999998888888876
No 33
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=41.30 E-value=29 Score=26.79 Aligned_cols=50 Identities=4% Similarity=0.061 Sum_probs=42.6
Q ss_pred cCCccchhHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccccccHHHH
Q 009284 113 TVNSADSTQAKEIAAYLFLDITGGFVDHDEKLMVKILEAFDVRLTDIEKA 162 (538)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~e~f~~~~~~~~~a 162 (538)
.-+|+++-+.-++.-..+-.+..|........+.++++.||++.+++...
T Consensus 25 gltq~~lA~~~gvs~~~is~~e~g~~~~~~~~~~~ia~~l~v~~~~l~~~ 74 (80)
T 3kz3_A 25 GLSYESVADKMGMGQSAVAALFNGINALNAYNAALLAKILKVSVEEFSPS 74 (80)
T ss_dssp TCCHHHHHHHTTSCHHHHHHHHTTSSCCCHHHHHHHHHHHTSCGGGTCHH
T ss_pred CCCHHHHHHHhCcCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHhHH
Confidence 34588988888888899999999988877899999999999998876544
No 34
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=40.95 E-value=25 Score=25.43 Aligned_cols=46 Identities=17% Similarity=0.194 Sum_probs=39.2
Q ss_pred CCccchhHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccccccH
Q 009284 114 VNSADSTQAKEIAAYLFLDITGGFVDHDEKLMVKILEAFDVRLTDI 159 (538)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~e~f~~~~~~~ 159 (538)
-+++|+.+.-.+....+-.+..|........+.++++.||++..++
T Consensus 15 ~s~~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~i~~~l~~~~~~l 60 (66)
T 2xi8_A 15 ISQSELAALLEVSRQTINGIEKNKYNPSLQLALKIAYYLNTPLEDI 60 (66)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHTTSCCCCHHHHHHHHHHTTSCHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHCcCHHHH
Confidence 3578888888888899999999987777888999999999977665
No 35
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=39.40 E-value=31 Score=27.53 Aligned_cols=47 Identities=9% Similarity=0.141 Sum_probs=40.2
Q ss_pred cCCccchhHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccccccH
Q 009284 113 TVNSADSTQAKEIAAYLFLDITGGFVDHDEKLMVKILEAFDVRLTDI 159 (538)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~e~f~~~~~~~ 159 (538)
.-+++++.+.-.+....+-.+..|........+.+|++.||++++++
T Consensus 22 glsq~~lA~~~gis~~~is~~e~G~~~p~~~~l~~ia~~l~v~~~~l 68 (94)
T 2kpj_A 22 EKTQLEIAKSIGVSPQTFNTWCKGIAIPRMGKVQALADYFNINKSDL 68 (94)
T ss_dssp SSCHHHHHHHHTCCHHHHHHHHTTSCCCCHHHHHHHHHHHTCCTHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHhCCCCCCHHHHHHHHHHHCcCHHHH
Confidence 34688888888888899999999987767888999999999988876
No 36
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=39.36 E-value=34 Score=25.39 Aligned_cols=47 Identities=9% Similarity=0.097 Sum_probs=39.8
Q ss_pred cCCccchhHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccccccH
Q 009284 113 TVNSADSTQAKEIAAYLFLDITGGFVDHDEKLMVKILEAFDVRLTDI 159 (538)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~e~f~~~~~~~ 159 (538)
.-+++++-+.-.+....+-.+..|........+.++++.||++..++
T Consensus 26 g~s~~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~l~~~l~~~~~~l 72 (74)
T 1y7y_A 26 GLSQETLAFLSGLDRSYVGGVERGQRNVSLVNILKLATALDIEPREL 72 (74)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHTTCSCCBHHHHHHHHHHTTSCGGGG
T ss_pred CCCHHHHHHHHCcCHHHHHHHHCCCCCCCHHHHHHHHHHhCcCHHHH
Confidence 34688888888888899999999987767888999999999987765
No 37
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=38.44 E-value=31 Score=26.52 Aligned_cols=47 Identities=11% Similarity=0.065 Sum_probs=41.0
Q ss_pred cCCccchhHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccccccH
Q 009284 113 TVNSADSTQAKEIAAYLFLDITGGFVDHDEKLMVKILEAFDVRLTDI 159 (538)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~e~f~~~~~~~ 159 (538)
.-+++++.+.-.+....+-.+-.|........+.+|++.||+++.++
T Consensus 24 glsq~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~ia~~l~v~~~~l 70 (82)
T 3s8q_A 24 GMTQEDLAYKSNLDRTYISGIERNSRNLTIKSLELIMKGLEVSDVVF 70 (82)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHTTCCCCBHHHHHHHHHHTTCCHHHH
T ss_pred CCCHHHHHHHhCcCHHHHHHHHCCCCCCCHHHHHHHHHHHCcCHHHH
Confidence 44688888888888999999999988778899999999999987776
No 38
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=38.23 E-value=30 Score=26.89 Aligned_cols=56 Identities=14% Similarity=0.164 Sum_probs=43.7
Q ss_pred HHHHhhhcccCCccchhHHHHHHHHHHHHHhcCCC-CChhHHHHHHHHHhccccccHH
Q 009284 104 SALRRHQKTTVNSADSTQAKEIAAYLFLDITGGFV-DHDEKLMVKILEAFDVRLTDIE 160 (538)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~r~~~~l~e~f~~~~~~~~ 160 (538)
.-||+..+.. +++++-+.-++....+-.+-.|.. ......+.+|++.||+++.++-
T Consensus 19 ~~l~~~R~~~-sq~~lA~~~gis~~~is~~E~g~~~~p~~~~l~~ia~~l~v~~~~l~ 75 (86)
T 2ofy_A 19 ELLRSARGDM-SMVTVAFDAGISVETLRKIETGRIATPAFFTIAAVARVLDLSLDDVA 75 (86)
T ss_dssp HHHHHHHTTS-CHHHHHHHHTCCHHHHHHHHTTCCSSCBHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHC-CHHHHHHHhCCCHHHHHHHHcCCCCCCCHHHHHHHHHHhCCCHHHHh
Confidence 3344433333 688888888888999999999987 6667889999999999887763
No 39
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=37.86 E-value=28 Score=26.12 Aligned_cols=46 Identities=9% Similarity=0.028 Sum_probs=39.5
Q ss_pred CCccchhHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccccccH
Q 009284 114 VNSADSTQAKEIAAYLFLDITGGFVDHDEKLMVKILEAFDVRLTDI 159 (538)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~e~f~~~~~~~ 159 (538)
-+++|+.+.-.+....+-.+..|........+.++++.||++.+++
T Consensus 24 ~s~~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~ia~~l~~~~~~l 69 (76)
T 3bs3_A 24 RTNRWLAEQMGKSENTISRWCSNKSQPSLDMLVKVAELLNVDPRQL 69 (76)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHTTSSCCCHHHHHHHHHHHTSCGGGG
T ss_pred CCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHCcCHHHH
Confidence 4578888888888899999999987777888999999999988775
No 40
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=36.72 E-value=38 Score=26.75 Aligned_cols=46 Identities=15% Similarity=0.177 Sum_probs=40.4
Q ss_pred CCccchhHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccccccH
Q 009284 114 VNSADSTQAKEIAAYLFLDITGGFVDHDEKLMVKILEAFDVRLTDI 159 (538)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~e~f~~~~~~~ 159 (538)
-+++|+-+.-.+....+-.+-.|........+.+|++.||++++++
T Consensus 27 lsq~~lA~~~gis~~~is~~e~g~~~p~~~~l~~la~~l~v~~~~l 72 (91)
T 1x57_A 27 LTQKDLATKINEKPQVIADYESGRAIPNNQVLGKIERAIGLKLRGK 72 (91)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHTCSCCCHHHHHHHHHHHTBCCSST
T ss_pred CCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHCcCHHHH
Confidence 4688988888888999999999987767888999999999999986
No 41
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=36.58 E-value=33 Score=24.97 Aligned_cols=46 Identities=4% Similarity=0.045 Sum_probs=38.8
Q ss_pred CCccchhHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccccccH
Q 009284 114 VNSADSTQAKEIAAYLFLDITGGFVDHDEKLMVKILEAFDVRLTDI 159 (538)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~e~f~~~~~~~ 159 (538)
-+++|+-+.-.+....+-.+..|........+.++++.||++..++
T Consensus 19 ~s~~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~i~~~l~~~~~~l 64 (68)
T 2r1j_L 19 IRQAALGKMVGVSNVAISQWERSETEPNGENLLALSKALQCSPDYL 64 (68)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHTTSSCCBHHHHHHHHHHTTSCHHHH
T ss_pred CCHHHHHHHHCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHH
Confidence 3588888888888899999999977767888999999999977664
No 42
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=35.23 E-value=37 Score=25.07 Aligned_cols=47 Identities=6% Similarity=0.090 Sum_probs=39.4
Q ss_pred cCCccchhHHHH--HHHHHHHHHhcCCCCChhHHHHHHHHHhccccccH
Q 009284 113 TVNSADSTQAKE--IAAYLFLDITGGFVDHDEKLMVKILEAFDVRLTDI 159 (538)
Q Consensus 113 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~r~~~~l~e~f~~~~~~~ 159 (538)
.-+++|+-+.-. +....+-.+-.|........+.++++.||++++++
T Consensus 21 glsq~~lA~~~g~~is~~~i~~~e~g~~~~~~~~l~~la~~l~v~~~~l 69 (71)
T 2ewt_A 21 GLSLHGVEEKSQGRWKAVVVGSYERGDRAVTVQRLAELADFYGVPVQEL 69 (71)
T ss_dssp TCCHHHHHHHTTTSSCHHHHHHHHHTCSCCCHHHHHHHHHHHTSCGGGG
T ss_pred CCCHHHHHHHHCCcCCHHHHHHHHCCCCCCCHHHHHHHHHHHCcCHHHH
Confidence 346888887777 78889999999987777888999999999988765
No 43
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=33.81 E-value=96 Score=29.11 Aligned_cols=92 Identities=8% Similarity=0.093 Sum_probs=61.9
Q ss_pred HHHHHhhhcccCCccchhHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccccccHHHHHhhhhhccccchhHHHHHHH
Q 009284 103 ISALRRHQKTTVNSADSTQAKEIAAYLFLDITGGFVDHDEKLMVKILEAFDVRLTDIEKAITQLKAQNEHRFDTAKTVIE 182 (538)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~e~f~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 182 (538)
|-.+|.-. +-+|+++.+.- +....+-.|-.|........+.+|++.||++++.+-.-- +....... ..+.
T Consensus 10 i~~~R~~~--~~tq~~la~~~-~s~~~~s~~e~g~~~~~~~~l~~i~~~l~~~~~~~~~~~------~~~~~~~~-~~l~ 79 (293)
T 3u3w_A 10 IKKIRVLR--GLTQKQLSENI-CHQSEVSRIESGAVYPSMDILQGIAAKLQIPIIHFYEVL------IYSDIERK-KQFK 79 (293)
T ss_dssp HHHHHHHT--TCCHHHHHTTT-SCHHHHHHHHTTSCCCCHHHHHHHHHHHTCCTHHHHHTT------TSSCHHHH-HHHH
T ss_pred HHHHHHHC--CCCHHHHHHHh-CCHHHHHHHHCCCCCCCHHHHHHHHHHhCcCHHHHhCCC------CCCcchhH-HHHH
Confidence 34455422 34588887777 888889999999988889999999999999988763321 11112222 2223
Q ss_pred HHHHHHHhhchhhHHHHHHHhh
Q 009284 183 QYIFAMIDSQSYMTAVSLLEHF 204 (538)
Q Consensus 183 ~yi~~~~~~~~~~~~~~li~~f 204 (538)
+-+..++..+.|..|..+++..
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~ 101 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNE 101 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHH
Confidence 3456667778888787777654
No 44
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=33.72 E-value=45 Score=26.01 Aligned_cols=61 Identities=7% Similarity=0.160 Sum_probs=45.0
Q ss_pred hHHHHHHHHhhhcc-cCCccchhHHHHHHHHHHHHHhcCCC-CChhHHHHHHHHHhccccccH
Q 009284 99 SHLIISALRRHQKT-TVNSADSTQAKEIAAYLFLDITGGFV-DHDEKLMVKILEAFDVRLTDI 159 (538)
Q Consensus 99 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~r~~~~l~e~f~~~~~~~ 159 (538)
...+-.-||++.+. .-+|+|+-+.-.+....+-.+..|-. ......+.++++.||++++-+
T Consensus 16 ~~~~~~~l~~~r~~~glsq~elA~~~gis~~~is~~e~g~~~~~~~~~l~~la~~l~~~~~~l 78 (83)
T 2a6c_A 16 RSQLLIVLQEHLRNSGLTQFKAAELLGVTQPRVSDLMRGKIDLFSLESLIDMITSIGLKVEIN 78 (83)
T ss_dssp HHHHHHHHHHHHHTTTCCHHHHHHHHTSCHHHHHHHHTTCGGGCCHHHHHHHHHHTTCCCCCC
T ss_pred cHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCCHHHHHHHHHHcCCCeEEE
Confidence 33444445554333 44688888888888899999999987 356778999999999987643
No 45
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=33.34 E-value=81 Score=27.27 Aligned_cols=43 Identities=16% Similarity=0.135 Sum_probs=30.6
Q ss_pred HHHHHhhchhhHHHHHHHhhhccccchHHHHHHHhccchHHHHHHHHhcCchHH
Q 009284 185 IFAMIDSQSYMTAVSLLEHFSIRQSGESFLLKMIQNKEFKAAEKWATFMGKPIL 238 (538)
Q Consensus 185 i~~~~~~~~~~~~~~li~~f~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~ 238 (538)
|-+.+++..-.++|+||+-- .+|--|+|+.|-.+..-.-.|.+
T Consensus 28 IAdwL~~~~~~E~v~lIR~s-----------SLmNrG~Yq~Al~l~~~~c~pdl 70 (115)
T 2uwj_G 28 IAEWLERLGQDEAARLIRIS-----------SLANQGRYQEALAFAHGNPWPAL 70 (115)
T ss_dssp HHHHHHHTTCHHHHHHHHHH-----------HHHHTTCHHHHHGGGTTCCCGGG
T ss_pred HHHHHHhCCcHHHHHHHHHH-----------HHHcchhHHHHHHhcCCCCCchH
Confidence 34445553337899999854 45677899999887777777876
No 46
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=32.92 E-value=41 Score=27.29 Aligned_cols=55 Identities=13% Similarity=0.144 Sum_probs=44.4
Q ss_pred HHHHHHhhhcccCCccchhHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccccccH
Q 009284 102 IISALRRHQKTTVNSADSTQAKEIAAYLFLDITGGFVDHDEKLMVKILEAFDVRLTDI 159 (538)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~e~f~~~~~~~ 159 (538)
-|..+|.-. .-+|+++-+.-.+..+++-.+..|... ....+.+|++.||++.+++
T Consensus 28 rLk~lR~~~--glTq~eLA~~~GiS~~tis~iE~G~~~-s~~~l~kIa~~L~v~~~~L 82 (88)
T 3t76_A 28 KLWKLLIDR--DMKKGELREAVGVSKSTFAKLGKNENV-SLTVLLAICEYLNCDFGDI 82 (88)
T ss_dssp HHHHHHHHT--TCCHHHHHHHHTCCHHHHHHHHTTCCC-CHHHHHHHHHHHTCCGGGT
T ss_pred HHHHHHHHc--CCCHHHHHHHHCcCHHHHHHHHcCCCc-CHHHHHHHHHHHCcCHHHH
Confidence 345555533 346899999999999999999999764 7888999999999998886
No 47
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=32.74 E-value=38 Score=25.40 Aligned_cols=47 Identities=13% Similarity=0.128 Sum_probs=40.1
Q ss_pred cCCccchhHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccccccH
Q 009284 113 TVNSADSTQAKEIAAYLFLDITGGFVDHDEKLMVKILEAFDVRLTDI 159 (538)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~e~f~~~~~~~ 159 (538)
.-+++++.+.-.+....+-.+..|........+.++++.||+++.++
T Consensus 23 glsq~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~la~~l~~~~~~l 69 (77)
T 2b5a_A 23 GVSQEELADLAGLHRTYISEVERGDRNISLINIHKICAALDIPASTF 69 (77)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHTTCSCCBHHHHHHHHHHTTCCHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHhCcCHHHH
Confidence 34588888888888899999999987777888999999999987765
No 48
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=31.68 E-value=29 Score=26.96 Aligned_cols=48 Identities=10% Similarity=0.115 Sum_probs=40.9
Q ss_pred cCCccchhHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccccccHH
Q 009284 113 TVNSADSTQAKEIAAYLFLDITGGFVDHDEKLMVKILEAFDVRLTDIE 160 (538)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~e~f~~~~~~~~ 160 (538)
.-+++++-+.-.+....+-.+..|........+.++++.||+++..+.
T Consensus 25 glsq~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~i~~~l~~~~~~l~ 72 (88)
T 2wiu_B 25 GWTQSELAKKIGIKQATISNFENNPDNTTLTTFFKILQSLELSMTLCD 72 (88)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHCGGGCBHHHHHHHHHHTTCEEEEEC
T ss_pred CCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHhc
Confidence 346888888888888999999999776677889999999999998875
No 49
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=31.34 E-value=59 Score=25.44 Aligned_cols=49 Identities=4% Similarity=0.026 Sum_probs=41.3
Q ss_pred cCCccchhHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccccccHHH
Q 009284 113 TVNSADSTQAKEIAAYLFLDITGGFVDHDEKLMVKILEAFDVRLTDIEK 161 (538)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~e~f~~~~~~~~~ 161 (538)
.-+|+++-+.-++....+-.+..|........+.++++.||++..++-.
T Consensus 30 glsq~~lA~~~gis~~~is~~e~g~~~~~~~~l~~ia~~l~v~~~~l~~ 78 (92)
T 1lmb_3 30 GLSQESVADKMGMGQSGVGALFNGINALNAYNAALLAKILKVSVEEFSP 78 (92)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHTTSSCCCHHHHHHHHHHHTSCGGGTCH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHCCCHHHHhh
Confidence 4568898888888899999999998776778899999999998888643
No 50
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=31.10 E-value=41 Score=25.31 Aligned_cols=47 Identities=6% Similarity=0.055 Sum_probs=39.7
Q ss_pred cCCccchhHHHHHHHHHHHHHhcCCC-CChhHHHHHHHHHhccccccH
Q 009284 113 TVNSADSTQAKEIAAYLFLDITGGFV-DHDEKLMVKILEAFDVRLTDI 159 (538)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~r~~~~l~e~f~~~~~~~ 159 (538)
.-+++++-+.-++....+-.+..|.. ......+.++++.||+++.++
T Consensus 20 g~sq~~lA~~~gis~~~i~~~e~g~~~~~~~~~l~~ia~~l~~~~~~l 67 (78)
T 3b7h_A 20 NLTINRVATLAGLNQSTVNAMFEGRSKRPTITTIRKVCGTLGISVHDF 67 (78)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHCTTCCCCCHHHHHHHHHHHTCCHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHcCCCCCCCHHHHHHHHHHcCCCHHHH
Confidence 34588888888888899999999988 667888999999999987765
No 51
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=30.69 E-value=44 Score=24.88 Aligned_cols=46 Identities=4% Similarity=0.045 Sum_probs=39.2
Q ss_pred CCccchhHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccccccH
Q 009284 114 VNSADSTQAKEIAAYLFLDITGGFVDHDEKLMVKILEAFDVRLTDI 159 (538)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~e~f~~~~~~~ 159 (538)
-+++++-+.-.+....+-.+..|........+.++++.||++...+
T Consensus 19 ls~~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~ia~~l~~~~~~l 64 (76)
T 1adr_A 19 IRQAALGKMVGVSNVAISQWERSETEPNGENLLALSKALQCSPDYL 64 (76)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHTTSSCCCHHHHHHHHHHTTSCHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHCcCHHHH
Confidence 4588888888888889999999987767888999999999987765
No 52
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=29.42 E-value=47 Score=25.50 Aligned_cols=50 Identities=2% Similarity=-0.089 Sum_probs=42.3
Q ss_pred cCCccchhHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccccccHHHH
Q 009284 113 TVNSADSTQAKEIAAYLFLDITGGFVDHDEKLMVKILEAFDVRLTDIEKA 162 (538)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~e~f~~~~~~~~~a 162 (538)
.-+|+++-+.-++....+-.+-.|........+.++++.||++..++-..
T Consensus 27 gltq~elA~~~gis~~~is~~e~g~~~~~~~~l~~l~~~l~~~~~~l~~~ 76 (83)
T 3f6w_A 27 GITQKELAARLGRPQSFVSKTENAERRLDVIEFMDFCRGIGTDPYALLSK 76 (83)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHTTSSCCCHHHHHHHHHHHTCCHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHCCCCCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 34588888888888999999999988878899999999999988776443
No 53
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=29.40 E-value=41 Score=24.53 Aligned_cols=45 Identities=13% Similarity=0.145 Sum_probs=37.0
Q ss_pred CCccchhHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccccccH
Q 009284 114 VNSADSTQAKEIAAYLFLDITGGFVDHDEKLMVKILEAFDVRLTDI 159 (538)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~e~f~~~~~~~ 159 (538)
-+++|+-+.-.+....+-.+..|....... +.++++.||++..++
T Consensus 15 lsq~~lA~~~gis~~~i~~~e~g~~~~~~~-l~~la~~l~~~~~~l 59 (69)
T 1r69_A 15 LNQAELAQKVGTTQQSIEQLENGKTKRPRF-LPELASALGVSVDWL 59 (69)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHTTSCSSCTT-HHHHHHHTTCCHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHcCCCCCchH-HHHHHHHHCcCHHHH
Confidence 458888888888889999999997764444 999999999987765
No 54
>3mlf_A Transcriptional regulator; structural genomics, helix-turn-helix XRE-family like protei transcription regulator, PSI-2; 2.60A {Staphylococcus aureus subsp}
Probab=28.62 E-value=48 Score=27.69 Aligned_cols=55 Identities=16% Similarity=0.314 Sum_probs=44.4
Q ss_pred HHHHHhhhcccCCccchhHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccccccH
Q 009284 103 ISALRRHQKTTVNSADSTQAKEIAAYLFLDITGGFVDHDEKLMVKILEAFDVRLTDI 159 (538)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~e~f~~~~~~~ 159 (538)
|..+|.-.. -+++++-+.-.+....+-.+-.|........+.+|++.||++++++
T Consensus 28 Lk~~R~~~g--ltq~elA~~~gis~~~is~~E~G~~~ps~~~l~~ia~~l~v~~~~l 82 (111)
T 3mlf_A 28 LKELRTDYG--LTQKELGDLFKVSSRTIQNMEKDSTNIKDSLLSKYMSAFNVKYDDI 82 (111)
T ss_dssp HHHHHHHTT--CCHHHHHHHHTSCHHHHHHHHHCCTTCCHHHHHHHHHHHTCCGGGE
T ss_pred HHHHHHHcC--CCHHHHHHHHCcCHHHHHHHHCCCCCCCHHHHHHHHHHhCcCHHHH
Confidence 345555333 4588888888888899999999987777889999999999988875
No 55
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=28.54 E-value=45 Score=27.49 Aligned_cols=55 Identities=9% Similarity=0.216 Sum_probs=44.4
Q ss_pred HHHHhhhcccCCccchhHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccccccHH
Q 009284 104 SALRRHQKTTVNSADSTQAKEIAAYLFLDITGGFVDHDEKLMVKILEAFDVRLTDIE 160 (538)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~e~f~~~~~~~~ 160 (538)
..+|.-.. -+|+++-+.=++....+-.+-.|........+.+|++.||+++..+-
T Consensus 15 ~~~r~~~g--lsq~~lA~~~gis~~~i~~~e~g~~~p~~~~l~~la~~l~v~~~~l~ 69 (114)
T 3op9_A 15 SRLKKEHG--LKNHQIAELLNVQTRTVAYYMSGETKPDIEKLIRLATYFHLSIDELV 69 (114)
T ss_dssp HHHHHHHT--CCHHHHHHHHTSCHHHHHHHHHTSSCCCHHHHHHHHHHHTCCHHHHH
T ss_pred HHHHHHcC--CCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHh
Confidence 44554333 45888888888889999999999887788999999999999887763
No 56
>3vk0_A NHTF, transcriptional regulator; HTH motif, XRE transcription factor, DNA binding protein; 1.88A {Neisseria meningitidis}
Probab=27.05 E-value=55 Score=27.16 Aligned_cols=62 Identities=6% Similarity=0.025 Sum_probs=47.1
Q ss_pred hhHHHHHHHHhhhcc-cCCccchhHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccccccH
Q 009284 98 FSHLIISALRRHQKT-TVNSADSTQAKEIAAYLFLDITGGFVDHDEKLMVKILEAFDVRLTDI 159 (538)
Q Consensus 98 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~e~f~~~~~~~ 159 (538)
+...+-.-||+..+. .-+|+++-+.-.+....+-.+-.|........+.+|++.||+++.++
T Consensus 18 ~~~~~g~~lr~~R~~~gltq~elA~~~gis~~~is~~E~G~~~p~~~~l~~ia~~l~v~~~~l 80 (114)
T 3vk0_A 18 LRAVLAYNMRLFRVNKGWSQEELARQCGLDRTYVSAVERKRWNIALSNIEKMAAALGVAAYQL 80 (114)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHTTTCCCCCHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHH
Confidence 334444445443222 44688888888888899999999998888999999999999988775
No 57
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, clostridium diffic structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile}
Probab=26.00 E-value=55 Score=27.49 Aligned_cols=55 Identities=13% Similarity=0.212 Sum_probs=44.6
Q ss_pred HHHHHhhhcccCCccchhHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccccccH
Q 009284 103 ISALRRHQKTTVNSADSTQAKEIAAYLFLDITGGFVDHDEKLMVKILEAFDVRLTDI 159 (538)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~e~f~~~~~~~ 159 (538)
|..+|.-. .-+++++-+.-++....+-.+-.|........+.+|++.||+++.++
T Consensus 17 lk~~R~~~--glsq~~lA~~~gis~~~is~~E~g~~~p~~~~l~~ia~~l~v~~~~l 71 (126)
T 3ivp_A 17 IKEARKKQ--GLTREQVGAMIEIDPRYLTNIENKGQHPSLQVLYDLVSLLNVSVDEF 71 (126)
T ss_dssp HHHHHHHT--TCCHHHHHHHHTCCHHHHHHHHHSCCCCCHHHHHHHHHHHTCCSHHH
T ss_pred HHHHHHHc--CCCHHHHHHHhCcCHHHHHHHHCCCCCCCHHHHHHHHHHHCcCHHHH
Confidence 34455423 34688888888888999999999998778899999999999988876
No 58
>2jvl_A TRMBF1; coactivator, helix-turn-helix, Pro binding, transcription; NMR {Trichoderma reesei}
Probab=24.59 E-value=85 Score=25.87 Aligned_cols=58 Identities=16% Similarity=0.227 Sum_probs=45.3
Q ss_pred HHHHHHhhhc---ccCCccchhHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccccccH
Q 009284 102 IISALRRHQK---TTVNSADSTQAKEIAAYLFLDITGGFVDHDEKLMVKILEAFDVRLTDI 159 (538)
Q Consensus 102 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~e~f~~~~~~~ 159 (538)
+-.-||...+ ..-+|+|+-+.-.+....+-.+-.|........+.+|++.||+++++.
T Consensus 35 ~g~~lk~~R~~~~~glsq~elA~~~gis~~~is~~E~G~~~p~~~~l~~ia~~l~v~~~e~ 95 (107)
T 2jvl_A 35 VGKAIEQGRQKFEPTMTQAELGKEIGETAATVASYERGTATPDQNILSKMERVLNVKLRGA 95 (107)
T ss_dssp HHHHHHHHHTTSSSCCCHHHHHHHHTCCHHHHHHHTTTCSCCCHHHHHHHHHTTTCBSSSS
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHCcCHhhh
Confidence 3344444433 244689998888888999999999987767888999999999999875
No 59
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=24.15 E-value=3.3e+02 Score=33.62 Aligned_cols=163 Identities=13% Similarity=0.138 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHhcCCCCChhHHHHHHHHHhccccccHHHHHhhhhhccccchhHHHHH-----HHHHHHHHHhh------
Q 009284 123 KEIAAYLFLDITGGFVDHDEKLMVKILEAFDVRLTDIEKAITQLKAQNEHRFDTAKTV-----IEQYIFAMIDS------ 191 (538)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~r~~~~l~e~f~~~~~~~~~a~~~~~~~~~~~~~~~~~~-----~~~yi~~~~~~------ 191 (538)
..-++.+++|+.++--+.+..+=-||+|+==+.-..|++||-++.+-..++......+ +-|..-|...+
T Consensus 559 iq~~t~fLld~lk~n~~e~~~LQTrlle~Nl~~~pqvadail~~~~fthyd~~~IA~LCE~aGl~qrale~y~d~~dikR 638 (1630)
T 1xi4_A 559 IQQCTAFLLDALKNNRPSEGPLQTRLLEMNLMHAPQVADAILGNQMFTHYDRAHIAQLCEKAGLLQRALEHFTDLYDIKR 638 (1630)
T ss_pred HHHHHHHHHHHHhCCChhhhhHhHHHHHHhhccchhHHHHHHhcCccccccHHHHHHHHHHcCcHHHHHHhcCCHHHHHH
Confidence 3457899999999976655666678999877777778999877666543333321111 11111111111
Q ss_pred -----chhhH--HHHHHHhhhccccchHHHHHHHhccc-------hHHHHHHHHhcCchHHHHHHhhhhchHH------H
Q 009284 192 -----QSYMT--AVSLLEHFSIRQSGESFLLKMIQNKE-------FKAAEKWATFMGKPILLKRLAEKACWDI------A 251 (538)
Q Consensus 192 -----~~~~~--~~~li~~f~~~~~~~~~l~~~~~~~~-------~~~a~~~~~~~~~~~~~~~l~~k~~wd~------a 251 (538)
....+ -++-.-+.|.+++ ...|..|+..|- .+.|.++....|-..+|+-+-+-.+||- +
T Consensus 639 ~~~~~~~~~~~~l~~~fg~l~~~~s-~~~l~~~l~~n~~qnlq~vvqva~ky~~~lg~~~li~~fe~~~~~egl~y~l~s 717 (1630)
T 1xi4_A 639 AVVHTHLLNPEWLVNYFGSLSVEDS-LECLRAMLSANIRQNLQICVQVASKYHEQLSTQSLIELFESFKSFEGLFYFLGS 717 (1630)
T ss_pred HhhccCcCCHHHHHHHHhcCCHHHH-HHHHHHHHHHhHhhhhhhhhhHHHHHHhhcCHHHHHHHHHHhcchhhHHHHHHh
Confidence 00000 1111222223222 224555554331 2367889999999998888877788886 5
Q ss_pred HHHhhcchhHHHHHHHHhhccCCHHHHHHHHHHcC
Q 009284 252 EAKTKGDKRLLEYLVYLAMEAGYSEKVDELCERYS 286 (538)
Q Consensus 252 ~~~~~~D~~l~~~lv~L~~~~~d~~~L~~l~~rye 286 (538)
-+-..+|+++..-.++.+.+.+...++...|++-.
T Consensus 718 iv~~s~d~~vhfkyi~aa~~~~q~~everi~res~ 752 (1630)
T 1xi4_A 718 IVNFSQDPDVHFKYIQAACKTGQIKEVERICRESN 752 (1630)
T ss_pred hccccCChHHHHHHHHHHHHhCCchhhhHHhccCC
Confidence 56677799999988988888888888888777633
No 60
>3k6g_A Telomeric repeat-binding factor 2-interacting Pro; helix, chromosomal protein, nucleus, phosphoprotein, telomer cycle, DNA-binding, protein binding; 1.95A {Homo sapiens}
Probab=24.05 E-value=58 Score=27.95 Aligned_cols=38 Identities=16% Similarity=0.450 Sum_probs=30.3
Q ss_pred hHHHHHHHHHhccccccHHHHHhhhhhccccchhHHHHHHHH
Q 009284 142 EKLMVKILEAFDVRLTDIEKAITQLKAQNEHRFDTAKTVIEQ 183 (538)
Q Consensus 142 ~r~~~~l~e~f~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 183 (538)
-+++..+.|.|.++|-+|+.|+ +|+--++.+++.||..
T Consensus 14 ~~~i~~lMeef~~DL~sVTqAl----LK~SGel~at~~fL~~ 51 (111)
T 3k6g_A 14 IKIIRQLMEKFNLDLSTVTQAF----LKNSGELEATSAFLAS 51 (111)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHH----HHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHH----HHccccHHHHHHHHhC
Confidence 5788999999999999999997 4554467777777644
No 61
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=23.90 E-value=70 Score=28.83 Aligned_cols=47 Identities=6% Similarity=-0.003 Sum_probs=41.0
Q ss_pred cCCccchhHHHHHHHHHHHHHhcCCC-CChhHHHHHHHHHhccccccH
Q 009284 113 TVNSADSTQAKEIAAYLFLDITGGFV-DHDEKLMVKILEAFDVRLTDI 159 (538)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~r~~~~l~e~f~~~~~~~ 159 (538)
.-+++|+-+.-.+....+-.|-.|.. ......+.+|++.||+++.++
T Consensus 23 g~s~~~la~~~gis~~~ls~~e~g~~~~p~~~~l~~ia~~l~~~~~~l 70 (198)
T 2bnm_A 23 KMDHAALASLLGETPETVAAWENGEGGELTLTQLGRIAHVLGTSIGAL 70 (198)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHTTTCTTCBHHHHHHHHHHTTSCTGGG
T ss_pred CCCHHHHHHHHCcCHHHHHHHHcCCCCCCCHHHHHHHHHHhCCCHHHE
Confidence 34588888888889999999999988 777888999999999988887
No 62
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=23.89 E-value=56 Score=23.91 Aligned_cols=45 Identities=9% Similarity=0.145 Sum_probs=36.7
Q ss_pred CCccchhHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccccccH
Q 009284 114 VNSADSTQAKEIAAYLFLDITGGFVDHDEKLMVKILEAFDVRLTDI 159 (538)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~e~f~~~~~~~ 159 (538)
-+++|+-+.-.+....+-.+..|..... ..+.+|++.||++...+
T Consensus 17 lsq~~lA~~~gis~~~i~~~e~g~~~~~-~~l~~i~~~l~~~~~~l 61 (71)
T 1zug_A 17 MTQTELATKAGVKQQSIQLIEAGVTKRP-RFLFEIAMALNCDPVWL 61 (71)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHTTCCSSC-STHHHHHHHTTSCHHHH
T ss_pred CCHHHHHHHhCCCHHHHHHHHcCCCCCh-HHHHHHHHHHCCCHHHH
Confidence 3588888888888899999999987643 34999999999987765
No 63
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=23.19 E-value=72 Score=28.73 Aligned_cols=47 Identities=11% Similarity=0.144 Sum_probs=41.2
Q ss_pred cCCccchhHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccccccH
Q 009284 113 TVNSADSTQAKEIAAYLFLDITGGFVDHDEKLMVKILEAFDVRLTDI 159 (538)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~e~f~~~~~~~ 159 (538)
.-+++|+-+.-.+....+-.+-.|...-....+.+|++.||+++.++
T Consensus 24 gltq~~lA~~~gis~~~is~~e~g~~~p~~~~l~~ia~~l~v~~~~l 70 (192)
T 1y9q_A 24 GLSLDATAQLTGVSKAMLGQIERGESSPTIATLWKIASGLEASFSAF 70 (192)
T ss_dssp TCCHHHHHHHHSSCHHHHHHHHTTCSCCCHHHHHHHHHHHTCCSGGG
T ss_pred CCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHCcCHHHH
Confidence 34588988888889999999999988777888999999999988887
No 64
>3trb_A Virulence-associated protein I; mobIle and extrachromosomal element functions, DNA binding P; 2.00A {Coxiella burnetii}
Probab=23.15 E-value=65 Score=26.81 Aligned_cols=47 Identities=9% Similarity=0.049 Sum_probs=40.5
Q ss_pred cCCccchhHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccccccH
Q 009284 113 TVNSADSTQAKEIAAYLFLDITGGFVDHDEKLMVKILEAFDVRLTDI 159 (538)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~e~f~~~~~~~ 159 (538)
.-+|+++-+.-.+.-..+-+|..|-.......+.+|.+.||++.+.+
T Consensus 27 gltq~eLA~~lGis~~~is~ie~G~~~~s~~~~~kla~~lgvs~~~l 73 (104)
T 3trb_A 27 KMSANQLAKHLAIPTNRVTAILNGARSITADTALRLAKFFGTTPEFW 73 (104)
T ss_dssp SCCHHHHHHHHTSCHHHHHHHHTTSSCCCHHHHHHHHHHHTCCHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHCcCHHHH
Confidence 45689998888888999999999998888999999999999975443
No 65
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=22.58 E-value=52 Score=25.41 Aligned_cols=38 Identities=24% Similarity=0.336 Sum_probs=29.1
Q ss_pred chHHHHHHHhccchHHHHHHHHhcCch-----HHHHHHhhhhc
Q 009284 210 GESFLLKMIQNKEFKAAEKWATFMGKP-----ILLKRLAEKAC 247 (538)
Q Consensus 210 ~~~~l~~~~~~~~~~~a~~~~~~~~~~-----~~~~~l~~k~~ 247 (538)
++..|.-+-.+|.|=....||..+|-+ +++++|++||.
T Consensus 12 e~~lL~yIr~sGGildI~~~a~kygV~kdeV~~~LrrLe~KGL 54 (59)
T 2xvc_A 12 ERELLDYIVNNGGFLDIEHFSKVYGVEKQEVVKLLEALKNKGL 54 (59)
T ss_dssp HHHHHHHHHHTTSEEEHHHHHHHHCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHcCCEEeHHHHHHHhCCCHHHHHHHHHHHHHCCC
Confidence 344566666777888889999999965 45999999984
No 66
>3f52_A CLP gene regulator (CLGR); helix-turn-helix motif, transcriptional ACTI human pathogen, transcription activator; 1.75A {Corynebacterium glutamicum} PDB: 3f51_A
Probab=22.37 E-value=63 Score=26.68 Aligned_cols=48 Identities=13% Similarity=0.250 Sum_probs=41.6
Q ss_pred cCCccchhHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccccccHH
Q 009284 113 TVNSADSTQAKEIAAYLFLDITGGFVDHDEKLMVKILEAFDVRLTDIE 160 (538)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~e~f~~~~~~~~ 160 (538)
.-+++++-+.-++....+-.+-.|........+.+|++.||+++.++-
T Consensus 41 glsq~~lA~~~gis~~~is~~E~g~~~~~~~~l~~la~~l~v~~~~l~ 88 (117)
T 3f52_A 41 GVTLRELAEASRVSPGYLSELERGRKEVSSELLASVCHALGASVADVL 88 (117)
T ss_dssp TCCHHHHHHHTTSCHHHHHHHHTTSSCCCHHHHHHHHHHHTCCHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHCCCCCCCHHHHHHHHHHhCCCHHHHH
Confidence 346888888888889999999999988788999999999999887753
No 67
>2f6m_B Vacuolar protein sorting-associated protein VPS28; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.2 PDB: 2f66_B
Probab=22.23 E-value=70 Score=27.63 Aligned_cols=67 Identities=21% Similarity=0.325 Sum_probs=42.1
Q ss_pred chhHHHHHH-HHHHHHHHhhchhhH-HHHHHHhhhccccchHHHHHHHhccchHHHHHHHHhcCc--hHHHHHH
Q 009284 173 RFDTAKTVI-EQYIFAMIDSQSYMT-AVSLLEHFSIRQSGESFLLKMIQNKEFKAAEKWATFMGK--PILLKRL 242 (538)
Q Consensus 173 ~~~~~~~~~-~~yi~~~~~~~~~~~-~~~li~~f~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~--~~~~~~l 242 (538)
++..+=+.| +.||+..+.++-|.+ |..||-+|..-..++.. ..++ ..|+..+.|...++. |.-+.||
T Consensus 36 SII~tle~LEkAyikD~It~~eYt~~c~rLL~QyKt~~~~~~~--~~v~-~~~~~le~F~~~y~l~cp~A~~RL 106 (109)
T 2f6m_B 36 SIVITLDHVEKAYLKDSIDDTQYTNTVDKLLKQFKVYLNSQNK--EEIN-KHFQSIEAFADTYNITASNAITRL 106 (109)
T ss_dssp HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHTCTTT--THHH-HHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHhcccH--HHHH-HHCCCHHHHHHHhCCCChHHHHHH
Confidence 344444555 899999999988997 89999999865443210 0122 346667777776653 4334444
No 68
>3lfp_A CSP231I C protein; transcriptional regulator, DNA binding protein, helix-turn-H restriction-modification, transcription; 2.00A {Citrobacter SP} PDB: 3lis_A
Probab=22.10 E-value=47 Score=26.64 Aligned_cols=46 Identities=7% Similarity=0.075 Sum_probs=39.5
Q ss_pred CCccchhHHHHHHHHH----HHHHhcCCCCChhHHHHHHHHHhccccccH
Q 009284 114 VNSADSTQAKEIAAYL----FLDITGGFVDHDEKLMVKILEAFDVRLTDI 159 (538)
Q Consensus 114 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~r~~~~l~e~f~~~~~~~ 159 (538)
-+|+++-+.-++.... +-.+-.|........+.+|++.||++++++
T Consensus 15 lsq~~lA~~~gis~~~~~~~is~~E~g~~~p~~~~l~~la~~l~v~~~~l 64 (98)
T 3lfp_A 15 ISQEKLGVLAGIDEASASARMNQYEKGKHAPDFEMANRLAKVLKIPVSYL 64 (98)
T ss_dssp CCHHHHHHHTTCCHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHTSCGGGG
T ss_pred CCHHHHHHHhCCCcchhhhHHHHHHCCCCCCCHHHHHHHHHHHCcCHHHH
Confidence 4588888777777777 999999988778999999999999988886
No 69
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=20.38 E-value=1.4e+02 Score=27.87 Aligned_cols=90 Identities=9% Similarity=0.124 Sum_probs=57.9
Q ss_pred HHHHHhhhcccCCccchhHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccccccHHHHHhhhhhccccchhHHHHHHH
Q 009284 103 ISALRRHQKTTVNSADSTQAKEIAAYLFLDITGGFVDHDEKLMVKILEAFDVRLTDIEKAITQLKAQNEHRFDTAKTVIE 182 (538)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~e~f~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 182 (538)
|-.+|.-. +-+|+++.+.- +....+-.|-.|........+.+|++.||+++..+....... .......+ .
T Consensus 10 i~~~r~~~--~~tq~~la~~~-~s~~~is~~e~g~~~~~~~~l~~l~~~l~~~~~~l~~~~~~~------~~~~~~~l-~ 79 (293)
T 2qfc_A 10 IKKIRVLR--GLTQKQLSENI-CHQSEVSRIESGAVYPSMDILQGIAAKLQIPIIHFYEVLIYS------DIERKKQF-K 79 (293)
T ss_dssp HHHHHHHH--TCCTTTTTTTT-SCHHHHHHHHTSSSCCCHHHHHHHTTTSCCCTHHHHHHHHHH------HHHHHHHH-H
T ss_pred HHHHHHHc--CCCHHHHHHHH-cCHHHHHHHHCCCCCCCHHHHHHHHHHhCcCHHHHhcccccc------chhHHHHH-H
Confidence 34455433 34688888777 888899999999888788899999999999887764432100 11111222 2
Q ss_pred HHHHHHHhhchhhHHHHHHH
Q 009284 183 QYIFAMIDSQSYMTAVSLLE 202 (538)
Q Consensus 183 ~yi~~~~~~~~~~~~~~li~ 202 (538)
.-+..++..+.|..|..++.
T Consensus 80 ~~~~~~~~~~~y~~A~~~~~ 99 (293)
T 2qfc_A 80 DQVIMLCKQKRYKEIYNKVW 99 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHH
Confidence 23444556677776766653
No 70
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 PDB: 2yal_A
Probab=20.19 E-value=49 Score=26.79 Aligned_cols=47 Identities=11% Similarity=0.168 Sum_probs=40.0
Q ss_pred CCccchhHHHHHHHHHHHHHhcC-CCCChhHHHHHHHHHhccccccHH
Q 009284 114 VNSADSTQAKEIAAYLFLDITGG-FVDHDEKLMVKILEAFDVRLTDIE 160 (538)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~r~~~~l~e~f~~~~~~~~ 160 (538)
-+++++.+.-.+....+-.+..| ........+.++++.||++..++-
T Consensus 15 ltq~~lA~~~gis~~~i~~~e~g~~~~p~~~~l~~ia~~l~v~~~~l~ 62 (111)
T 1b0n_A 15 YSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLL 62 (111)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHTTCCSCCCHHHHHHHHHHHTCCHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHcCCCCCCCHHHHHHHHHHHCcCHHHHh
Confidence 45888888888899999999999 666677889999999999877763
Done!