Query 009285
Match_columns 538
No_of_seqs 291 out of 1274
Neff 4.8
Searched_HMMs 46136
Date Thu Mar 28 22:41:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009285.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009285hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK02944 OxaA-like protein pre 100.0 3E-52 6.5E-57 417.2 24.1 218 78-335 18-242 (255)
2 PRK01001 putative inner membra 100.0 4.8E-52 1E-56 457.4 25.7 274 35-337 501-778 (795)
3 PRK00145 putative inner membra 100.0 1.1E-51 2.4E-56 405.8 23.5 209 94-336 2-212 (223)
4 PRK01318 membrane protein inse 100.0 9.5E-51 2.1E-55 440.6 23.8 205 90-337 298-508 (521)
5 PRK02463 OxaA-like protein pre 100.0 7.9E-50 1.7E-54 408.9 25.2 219 78-337 21-251 (307)
6 PRK01622 OxaA-like protein pre 100.0 7.3E-50 1.6E-54 400.2 24.4 220 78-337 20-251 (256)
7 PRK00247 putative inner membra 100.0 9E-49 2E-53 414.6 27.5 258 94-352 2-288 (429)
8 TIGR03592 yidC_oxa1_cterm memb 100.0 8.2E-49 1.8E-53 373.5 20.5 181 120-335 1-181 (181)
9 PRK03449 putative inner membra 100.0 2.6E-48 5.7E-53 397.0 23.9 233 93-336 1-269 (304)
10 PRK01315 putative inner membra 100.0 3.8E-48 8.2E-53 399.4 24.1 241 90-338 4-259 (329)
11 PRK02201 putative inner membra 100.0 1.1E-47 2.3E-52 399.3 23.6 223 90-336 101-341 (357)
12 COG0706 YidC Preprotein transl 100.0 1.1E-47 2.4E-52 394.3 22.1 210 90-337 84-297 (314)
13 PF02096 60KD_IMP: 60Kd inner 100.0 2.2E-47 4.8E-52 365.6 20.8 194 119-337 1-197 (198)
14 PRK02654 putative inner membra 100.0 4.7E-38 1E-42 321.6 23.4 241 92-347 4-348 (375)
15 KOG1239 Inner membrane protein 99.9 5.5E-21 1.2E-25 201.1 15.7 196 100-335 86-290 (372)
16 KOG1239 Inner membrane protein 99.1 1.1E-10 2.5E-15 123.5 6.5 239 90-334 4-245 (372)
17 PRK00247 putative inner membra 94.7 0.67 1.5E-05 50.9 14.2 60 289-353 226-293 (429)
18 COG1422 Predicted membrane pro 93.8 0.44 9.5E-06 47.3 9.7 88 119-210 44-142 (201)
19 PRK01315 putative inner membra 75.5 1.2E+02 0.0026 32.5 16.0 111 95-212 2-129 (329)
20 PRK01001 putative inner membra 71.6 99 0.0021 36.9 14.9 78 127-211 577-662 (795)
21 PF05280 FlhC: Flagellar trans 56.7 19 0.00041 35.2 4.9 38 172-209 37-85 (175)
22 PF01956 DUF106: Integral memb 50.3 55 0.0012 31.0 6.9 63 146-208 45-112 (168)
23 PRK02201 putative inner membra 45.6 4.4E+02 0.0095 28.8 13.9 105 100-212 104-226 (357)
24 COG1422 Predicted membrane pro 43.6 3.4E+02 0.0073 27.5 11.3 63 147-212 78-148 (201)
25 PF09973 DUF2208: Predicted me 41.1 1.3E+02 0.0029 30.8 8.3 85 118-211 22-112 (233)
26 PF10852 DUF2651: Protein of u 29.2 3.4E+02 0.0074 23.8 7.6 19 261-279 7-25 (82)
27 PF09958 DUF2192: Uncharacteri 27.0 1.1E+02 0.0024 31.4 5.1 38 156-193 16-53 (231)
28 TIGR00828 EIID-AGA PTS system, 25.8 1.7E+02 0.0038 30.5 6.4 31 159-189 39-69 (271)
29 TIGR03593 yidC_nterm membrane 24.8 76 0.0017 33.6 3.7 22 90-111 343-364 (366)
30 PRK09855 PTS system N-acetylga 24.5 1.8E+02 0.0039 30.3 6.2 32 159-190 41-72 (263)
31 KOG3817 Uncharacterized conser 23.1 2.6E+02 0.0056 30.8 7.1 68 121-188 277-350 (452)
32 KOG4819 Uncharacterized conser 20.8 1.8E+02 0.004 26.3 4.6 31 382-412 33-63 (106)
No 1
>PRK02944 OxaA-like protein precursor; Validated
Probab=100.00 E-value=3e-52 Score=417.25 Aligned_cols=218 Identities=28% Similarity=0.605 Sum_probs=191.6
Q ss_pred ccCcccc---cccccccchhhhHHHHHHHHHHHHHhhhhccccCcchHHHHHHHHHHHHhhcccccHHHHHHHHHHHhhh
Q 009285 78 VSSSDAV---TTTKQNSDWLSGITNVMETVLKVLKDGMSTLHVPYAYGFAIILLTVIVKAATFPLTKKQVESSMAMRSLA 154 (538)
Q Consensus 78 ~~~~~~~---~~~~~~~~w~~~i~~~me~vL~~L~~~L~~ih~~~~WGlAIIllTllVRllllPL~ikQ~ks~~KMq~Lq 154 (538)
.++|+.. ..+.++|.|+++|+.++++++.++|..+ +.+||+|||++|+++|++++|++++|+|+++||+++|
T Consensus 18 ~~gc~~~~~~~~~~~~g~~~~~~~~p~~~~l~~i~~~~-----g~~wg~aIi~~TiivR~illPl~~~q~~~~~km~~iq 92 (255)
T PRK02944 18 LAGCSEVNQPITPKSTGFWNEYFVYPLSQLITYFANLF-----GSNYGLAIIVVTLLIRLLILPLMIKQTKSTKAMQALQ 92 (255)
T ss_pred HhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHh-----CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 4556543 2556778888889999999999998853 4699999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcC----HHHHHHHHHHHHHHcCCCCCcCchHHHHHHHHHHHHHHHHHhhhhcccccccceeccCCcCch
Q 009285 155 PQVKAIQERYAGD----QERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGFFWIPSLAGPT 230 (538)
Q Consensus 155 PeI~kIqeKyk~D----~qk~qqEm~kLYKe~gvNPl~GCLP~LIQIPIFIgLY~aLr~~a~~gL~~~gFLWi~DLs~PD 230 (538)
|||++||+||++| ++++++|+++|||||||||++||+|+|+|+|||||+|++++++.+ +.+++|+|+ ||+.+|
T Consensus 93 Pe~~~iq~kyk~~~~~~~~k~~~e~~~Lyk~~gvnP~~g~lp~liQ~Pifi~lf~~i~~~~~--l~~~~flW~-dLs~~D 169 (255)
T PRK02944 93 PEMQKLKEKYSSKDQATQQKLQQEMMQLFQKNGVNPLAGCLPIFIQMPILIAFYHAIMRTSE--ISKHSFLWF-DLGQAD 169 (255)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHhhHH--HhhcCCCcc-ccCcch
Confidence 9999999999864 567899999999999999999999999999999999999998864 678899999 998887
Q ss_pred hHhhhhcCCCccccccccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhcccCCCCcccHHHHHHHHHHHHHHHHHHhh
Q 009285 231 TIAARQNGSGISWLFPFVDGHPPLGWSDTFAYLVLPVLLVVSQYISVKIIQSSQNNDPNMKSSQALTNFLPLMIGYFALS 310 (538)
Q Consensus 231 ~i~a~~nG~~lswl~p~~~~~~~LG~~D~lpy~ILPIL~~~s~~ls~~i~~~~q~~dP~~k~~k~mm~~MPlmi~~f~~~ 310 (538)
||+|||+++++++|++.++....... +..+++.|+++||+++++|+++
T Consensus 170 ------------------------------p~~iLPil~~~~~~~~~~~~~~~~~~--~~~~~~~m~~i~p~~~~~~~~~ 217 (255)
T PRK02944 170 ------------------------------PYYILPIVAGITTFIQQKLMMAGTAG--QNPQMAMMLWLMPIMILIFAIN 217 (255)
T ss_pred ------------------------------HHHHHHHHHHHHHHHHHHhcccCCCC--CCHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999988874322211 1235678999999999999999
Q ss_pred hhhHhHHHHHhhhHHHHHHHHHHHH
Q 009285 311 VPSGLSLYWFTNNLLSTAQQVWLQK 335 (538)
Q Consensus 311 ~PaGL~LYWitSNlfsIvQq~iL~k 335 (538)
+|+||+|||++||+|+++|+++++.
T Consensus 218 ~Pagl~lYw~~s~~~~i~Q~~~l~~ 242 (255)
T PRK02944 218 FPAALSLYWVVGNIFMIAQTYLIKG 242 (255)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999974
No 2
>PRK01001 putative inner membrane protein translocase component YidC; Provisional
Probab=100.00 E-value=4.8e-52 Score=457.40 Aligned_cols=274 Identities=26% Similarity=0.456 Sum_probs=208.8
Q ss_pred cccccCceeeEEeeecCCCCCchhhhhhhhhccccccccccccccCcccccccccccchhhhHHHHHHHHHHHHHhhhhc
Q 009285 35 KPFLRGSICVAKFGLRPDPNSADGVKELLGVAERLLFTLADAAVSSSDAVTTTKQNSDWLSGITNVMETVLKVLKDGMST 114 (538)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~iad~a~~~~~~~~~~~~~~~w~~~i~~~me~vL~~L~~~L~~ 114 (538)
.|+. +.....+|.+..+|-+...++.+-..++.. .+... .....-...||+++|+.++..++.++..++..
T Consensus 501 ~~~~-~~~~~~~~~lY~GPkd~~~Lk~~~~~~~~~-----~~~~~---~~l~~i~~~GWf~fI~~Pia~~L~~ll~~fh~ 571 (795)
T PRK01001 501 LPLP-KEAGTYRFLVYAGPLADPTLKTLDRAYTNS-----KGENP---EYLDSITFRGFFSFITEPFAALLFIIMKFFKF 571 (795)
T ss_pred ccCC-CCcceEEEEEEeCCCcHHHHHHhhhhcccc-----ccccc---chhhhhhhccHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444 556667888888877655543221111000 00000 00111124689999999987776655444432
Q ss_pred cccCcchHHHHHHHHHHHHhhcccccHHHHHHHHHHHhhhHHHHHHHHHhhcCHHHHHHHHHHHHHHcCCCCCcCchHHH
Q 009285 115 LHVPYAYGFAIILLTVIVKAATFPLTKKQVESSMAMRSLAPQVKAIQERYAGDQERIQLETARLYKLAGINPLAGCLPTL 194 (538)
Q Consensus 115 ih~~~~WGlAIIllTllVRllllPL~ikQ~ks~~KMq~LqPeI~kIqeKyk~D~qk~qqEm~kLYKe~gvNPl~GCLP~L 194 (538)
+.+|||+|||++||+||++++||+++|+++|+||+.|||+|++||+||++|++++|+|||+|||+|||||++||||+|
T Consensus 572 --l~GnwGlAIILlTIIVRLlLlPLtiKS~kSmaKMq~LQPemqeIQeKYKdD~qK~QqEmMkLYKe~GVNPl~GCLPmL 649 (795)
T PRK01001 572 --LTGSWGISIILLTVFLKLLLYPLNAWSIRSMRRMQKLSPYIQEIQQKYKKEPKRAQMEIMALYKTNKVNPITGCLPLL 649 (795)
T ss_pred --hcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhHHHHHHHHHhHhHHHHHHHHHHHHHHHcCCCchHHHHHHH
Confidence 235999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhcccccccce--eccCCcCchhHhhhhcCCCccccccccCCCCCCCCchhHHHHHHHHHHHHH
Q 009285 195 ATIPVWIGLYRALSNVADEGLLTEGFF--WIPSLAGPTTIAARQNGSGISWLFPFVDGHPPLGWSDTFAYLVLPVLLVVS 272 (538)
Q Consensus 195 IQIPIFIgLY~aLr~~a~~gL~~~gFL--Wi~DLs~PD~i~a~~nG~~lswl~p~~~~~~~LG~~D~lpy~ILPIL~~~s 272 (538)
|||||||+||++|+++.. +...+|+ |++||+.||++. .|..|. +.+| | ++.||||+++++
T Consensus 650 IQmPIFfALY~vL~~sie--LRgasFLpgWI~DLSapDplf--------~~~~~i----~FiG--d--~i~ILPILmgvt 711 (795)
T PRK01001 650 IQLPFLIAMFDLLKSSFL--LRGASFIPGWIDNLTAPDVLF--------SWETPI----WFIG--N--EFHLLPILLGVV 711 (795)
T ss_pred HHHHHHHHHHHHHHHhHH--hcCCchhhhhHhhccCCCccc--------cccccc----cccc--c--chhHHHHHHHHH
Confidence 999999999999998754 5567887 999999999532 222211 0011 2 678999999999
Q ss_pred HHHHHHHhcccC--CCCcccHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHhhhHHHHHHHHHHHHhc
Q 009285 273 QYISVKIIQSSQ--NNDPNMKSSQALTNFLPLMIGYFALSVPSGLSLYWFTNNLLSTAQQVWLQKFG 337 (538)
Q Consensus 273 ~~ls~~i~~~~q--~~dP~~k~~k~mm~~MPlmi~~f~~~~PaGL~LYWitSNlfsIvQq~iL~k~~ 337 (538)
||++++++.... +.++++++++.|+++||+||++|+.++|+||+|||++||+|+++||+++++.+
T Consensus 712 mflqqkls~~~~~dp~t~qq~Qqk~M~~iMPImf~f~f~~fPSGL~LYW~tSNl~SI~QQ~iI~k~~ 778 (795)
T PRK01001 712 MFAQQKISSLKRKGPVTDQQRQQEAMGTMMALLFTFMFYNFPSGLNIYWLSSMLLGVIQQWVTNKIL 778 (795)
T ss_pred HHHHHHhcccCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhc
Confidence 999988754321 11223345567788999999999999999999999999999999999999854
No 3
>PRK00145 putative inner membrane protein translocase component YidC; Provisional
Probab=100.00 E-value=1.1e-51 Score=405.80 Aligned_cols=209 Identities=30% Similarity=0.605 Sum_probs=186.2
Q ss_pred hhhHHHHHHHHHHHHHhhhhccc--cCcchHHHHHHHHHHHHhhcccccHHHHHHHHHHHhhhHHHHHHHHHhhcCHHHH
Q 009285 94 LSGITNVMETVLKVLKDGMSTLH--VPYAYGFAIILLTVIVKAATFPLTKKQVESSMAMRSLAPQVKAIQERYAGDQERI 171 (538)
Q Consensus 94 ~~~i~~~me~vL~~L~~~L~~ih--~~~~WGlAIIllTllVRllllPL~ikQ~ks~~KMq~LqPeI~kIqeKyk~D~qk~ 171 (538)
+++|.+++..++..+|+.+..++ .+.|||+||+++|+++|++++|++++|+++++||+++||++++||+||++|++++
T Consensus 2 ~~~i~~~~~~~l~~~~~~~~~~~~~~g~~w~~sIi~~tiivR~~l~Pl~~~q~~~~~km~~iqP~~~~i~~k~k~d~~~~ 81 (223)
T PRK00145 2 MRYLNNAFVQFFKFIHGFVSSVISNPNFSYGIAIILVTLIIRLLILPLNIKQTKSSLRMNEIQPEIKKLQAKYKNDPQKL 81 (223)
T ss_pred chHHHHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHccHHHH
Confidence 34566667777777777766553 3689999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCcCchHHHHHHHHHHHHHHHHHhhhhcccccccceeccCCcCchhHhhhhcCCCccccccccCCC
Q 009285 172 QLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGFFWIPSLAGPTTIAARQNGSGISWLFPFVDGH 251 (538)
Q Consensus 172 qqEm~kLYKe~gvNPl~GCLP~LIQIPIFIgLY~aLr~~a~~gL~~~gFLWi~DLs~PD~i~a~~nG~~lswl~p~~~~~ 251 (538)
++|+++||||||+||++||+|+|+|+|||+++|+++++++. +.+++|+|++||+.||
T Consensus 82 ~~e~~~Lyk~~~inp~~~~lp~liQiPif~~l~~~i~~~~~--~~~~~flW~~dLt~~D--------------------- 138 (223)
T PRK00145 82 QQEMMKLYKEKGVNPLGGCLPLLIQWPILIALYYVFNNLTG--INGVSFLWIKDLAKPD--------------------- 138 (223)
T ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHHhhh--ccCCCccChhhccCcc---------------------
Confidence 99999999999999999999999999999999999999864 7788999999999887
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHHHhcccCCCCcccHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHhhhHHHHHHHH
Q 009285 252 PPLGWSDTFAYLVLPVLLVVSQYISVKIIQSSQNNDPNMKSSQALTNFLPLMIGYFALSVPSGLSLYWFTNNLLSTAQQV 331 (538)
Q Consensus 252 ~~LG~~D~lpy~ILPIL~~~s~~ls~~i~~~~q~~dP~~k~~k~mm~~MPlmi~~f~~~~PaGL~LYWitSNlfsIvQq~ 331 (538)
||+|||+++++++|++++++.... ..+.+.++.|+++||++++++++++|+||+|||++||+|+++|++
T Consensus 139 ---------p~~iLPil~~~~~~l~~~~~~~~~--~~~~~~~k~m~~~~~i~~~~~~~~~Pagl~lYW~~s~~~si~Q~~ 207 (223)
T PRK00145 139 ---------ITWILPILSGATTYLSGYLMTKAD--SSQAGQMKTMNIGMSIFMGVMSWKFKSALVLYWVIGNLIQIIQTY 207 (223)
T ss_pred ---------hHHHHHHHHHHHHHHHHHHcCCCC--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999988764331 122345678899999999999999999999999999999999999
Q ss_pred HHHHh
Q 009285 332 WLQKF 336 (538)
Q Consensus 332 iL~k~ 336 (538)
++++.
T Consensus 208 ~l~~~ 212 (223)
T PRK00145 208 FIKKL 212 (223)
T ss_pred HHHhh
Confidence 99874
No 4
>PRK01318 membrane protein insertase; Provisional
Probab=100.00 E-value=9.5e-51 Score=440.58 Aligned_cols=205 Identities=38% Similarity=0.705 Sum_probs=184.6
Q ss_pred ccchhhhHHHHHHHHHHHHHhhhhccccCcchHHHHHHHHHHHHhhcccccHHHHHHHHHHHhhhHHHHHHHHHhhcCHH
Q 009285 90 NSDWLSGITNVMETVLKVLKDGMSTLHVPYAYGFAIILLTVIVKAATFPLTKKQVESSMAMRSLAPQVKAIQERYAGDQE 169 (538)
Q Consensus 90 ~~~w~~~i~~~me~vL~~L~~~L~~ih~~~~WGlAIIllTllVRllllPL~ikQ~ks~~KMq~LqPeI~kIqeKyk~D~q 169 (538)
+.||+.+|+.++.++++++|.++ +|||+|||++|++||++++|++++|+++++||+++||+|++||+||++|++
T Consensus 298 ~~G~~~~~~~pl~~~L~~i~~~~------g~wg~aIillTiiiR~il~Pl~~~s~~s~~km~~lqP~~~~i~~kyk~d~~ 371 (521)
T PRK01318 298 DYGWLWFITKPLFWLLDFLHSFV------GNWGWAIILLTIIVKLLLFPLTYKSYVSMAKMKVLQPKMQELKEKYKDDPQ 371 (521)
T ss_pred ccCcHHHHHHHHHHHHHHHHHhc------ccHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHhHhhHH
Confidence 45788888888888888888632 499999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCcCchHHHHHHHHHHHHHHHHHhhhhcccccccce-eccCCcCchhHhhhhcCCCcccccccc
Q 009285 170 RIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGFF-WIPSLAGPTTIAARQNGSGISWLFPFV 248 (538)
Q Consensus 170 k~qqEm~kLYKe~gvNPl~GCLP~LIQIPIFIgLY~aLr~~a~~gL~~~gFL-Wi~DLs~PD~i~a~~nG~~lswl~p~~ 248 (538)
++|+|||+|||+|||||++||||+|+||||||++|++++++.+ +...+|+ ||+||+.||
T Consensus 372 k~~~e~~~LYKk~~vnPl~gclp~liQiPifialy~~l~~~~e--l~~~~fl~Wi~DLs~~D------------------ 431 (521)
T PRK01318 372 KMQQEMMELYKKEKVNPLGGCLPILIQIPIFFALYKVLLVSIE--LRHAPFIGWIHDLSAPD------------------ 431 (521)
T ss_pred HHHHHHHHHHHHcCCCccchhHHHHHHHHHHHHHHHHHHHHHH--hccCchheeeccccccc------------------
Confidence 9999999999999999999999999999999999999998765 6678887 999999998
Q ss_pred CCCCCCCCchhHHHHHH-----HHHHHHHHHHHHHHhcccCCCCcccHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHhhh
Q 009285 249 DGHPPLGWSDTFAYLVL-----PVLLVVSQYISVKIIQSSQNNDPNMKSSQALTNFLPLMIGYFALSVPSGLSLYWFTNN 323 (538)
Q Consensus 249 ~~~~~LG~~D~lpy~IL-----PIL~~~s~~ls~~i~~~~q~~dP~~k~~k~mm~~MPlmi~~f~~~~PaGL~LYWitSN 323 (538)
||+|| ||++++++|++++++.. +.+| +++.||.+||+++++|++++|+||+|||++||
T Consensus 432 ------------p~~il~~~~lPil~~~~~~~~~~l~~~--~~~~---~q~kim~~mpi~~~~~~~~~PagL~lYW~~sn 494 (521)
T PRK01318 432 ------------PYFILHIGLLPILMGITMFLQQKLNPT--PTDP---MQAKIMKFMPLIFTFFFLSFPAGLVLYWIVNN 494 (521)
T ss_pred ------------cchhHHHHHHHHHHHHHHHHHHHhcCC--CCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666 99999999999887543 2344 35567778999999999999999999999999
Q ss_pred HHHHHHHHHHHHhc
Q 009285 324 LLSTAQQVWLQKFG 337 (538)
Q Consensus 324 lfsIvQq~iL~k~~ 337 (538)
+|+++||+++++.+
T Consensus 495 ~~si~Q~~~l~~~~ 508 (521)
T PRK01318 495 LLTIIQQYLINRRL 508 (521)
T ss_pred HHHHHHHHHHhhhc
Confidence 99999999999854
No 5
>PRK02463 OxaA-like protein precursor; Provisional
Probab=100.00 E-value=7.9e-50 Score=408.89 Aligned_cols=219 Identities=25% Similarity=0.396 Sum_probs=186.2
Q ss_pred ccCccccc-ccccccchhhhHHHHHHHHHHHHHhhhhccccCcchHHHHHHHHHHHHhhcccccHHHHHH----HHHHHh
Q 009285 78 VSSSDAVT-TTKQNSDWLSGITNVMETVLKVLKDGMSTLHVPYAYGFAIILLTVIVKAATFPLTKKQVES----SMAMRS 152 (538)
Q Consensus 78 ~~~~~~~~-~~~~~~~w~~~i~~~me~vL~~L~~~L~~ih~~~~WGlAIIllTllVRllllPL~ikQ~ks----~~KMq~ 152 (538)
.++|.... .|...|-|++.++.|+..+++++|+. ++++||+|||++|++||++++||+++|+++ ++||+.
T Consensus 21 lsgc~~~~~~~~~~g~~~~~l~~p~~~~l~~i~~~-----~g~~~GlaII~~TiivRlillPL~i~q~~ka~~~~~KM~~ 95 (307)
T PRK02463 21 LTGCVGRDKHGNPTGFIWNFLGAPMSYFIDYFANN-----LGLGFGLAIIIVTIIVRLIILPLGLYQSWKATYQSEKMAY 95 (307)
T ss_pred HhccCCCCCCCCCCchHHHHHHHHHHHHHHHHHHH-----cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45565442 34556666678999999999998873 346899999999999999999999988875 689999
Q ss_pred hhHHHHHHHHHhhcC-----HHHHHHHHHHHHHHcCCCCCc--CchHHHHHHHHHHHHHHHHHhhhhcccccccceeccC
Q 009285 153 LAPQVKAIQERYAGD-----QERIQLETARLYKLAGINPLA--GCLPTLATIPVWIGLYRALSNVADEGLLTEGFFWIPS 225 (538)
Q Consensus 153 LqPeI~kIqeKyk~D-----~qk~qqEm~kLYKe~gvNPl~--GCLP~LIQIPIFIgLY~aLr~~a~~gL~~~gFLWi~D 225 (538)
+||++++||+||+++ ++++|+|+++|||||||||++ ||||+|||+|||||+|+++++. +++.+++|+|| |
T Consensus 96 lqPe~~~Iq~Kyk~~~~~~~~~~~q~em~~lyke~ginp~~~~GCLP~LIQ~PIf~aly~ai~~~--~~l~~~~flwi-d 172 (307)
T PRK02463 96 LKPVFEPINERLKNATTQEEKMAAQTELMAAQRENGISMLGGIGCLPLLIQMPFFSALYFAAQYT--KGVSTSTFLGI-D 172 (307)
T ss_pred hChhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCCCCccccchHHHHHHHHHHHHHHHHHhcc--hhhccCCeeee-e
Confidence 999999999999863 235689999999999999998 8999999999999999999976 45888999999 8
Q ss_pred CcCchhHhhhhcCCCccccccccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhcccCCCCcccHHHHHHHHHHHHHHH
Q 009285 226 LAGPTTIAARQNGSGISWLFPFVDGHPPLGWSDTFAYLVLPVLLVVSQYISVKIIQSSQNNDPNMKSSQALTNFLPLMIG 305 (538)
Q Consensus 226 Ls~PD~i~a~~nG~~lswl~p~~~~~~~LG~~D~lpy~ILPIL~~~s~~ls~~i~~~~q~~dP~~k~~k~mm~~MPlmi~ 305 (538)
|+.| +++||++++++++++++++....+ ..+.++++.|+++||+|++
T Consensus 173 L~~p--------------------------------~~iLpii~~v~~~~q~~~~~~~~~-~~q~~~mk~m~~~~Pim~~ 219 (307)
T PRK02463 173 LGSP--------------------------------SLVLTAIIGVLYFFQSWLSMMGVP-EEQREQMKAMMYMMPIMMV 219 (307)
T ss_pred cCch--------------------------------hHHHHHHHHHHHHHHHHHhccCCC-hhHHHHHHHHHHHHHHHHH
Confidence 8654 478999999999998887543332 2233567889999999999
Q ss_pred HHHhhhhhHhHHHHHhhhHHHHHHHHHHHHhc
Q 009285 306 YFALSVPSGLSLYWFTNNLLSTAQQVWLQKFG 337 (538)
Q Consensus 306 ~f~~~~PaGL~LYWitSNlfsIvQq~iL~k~~ 337 (538)
+|++++|+||+|||++||+|+++||+++++++
T Consensus 220 ~~~~~~PagL~lYW~~snlfsi~Q~~i~~~~~ 251 (307)
T PRK02463 220 VFSFSSPAGVGLYWLVGGFFSIIQQLITTYIL 251 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999765
No 6
>PRK01622 OxaA-like protein precursor; Validated
Probab=100.00 E-value=7.3e-50 Score=400.21 Aligned_cols=220 Identities=27% Similarity=0.499 Sum_probs=188.8
Q ss_pred ccCccccc--ccccccchhhhHHHHHHHHHHHHHhhhhccccCcchHHHHHHHHHHHHhhcccccHHHHHH----HHHHH
Q 009285 78 VSSSDAVT--TTKQNSDWLSGITNVMETVLKVLKDGMSTLHVPYAYGFAIILLTVIVKAATFPLTKKQVES----SMAMR 151 (538)
Q Consensus 78 ~~~~~~~~--~~~~~~~w~~~i~~~me~vL~~L~~~L~~ih~~~~WGlAIIllTllVRllllPL~ikQ~ks----~~KMq 151 (538)
.++|++.. .+..+|.|++++++++..++.++|+.+ +.+||+||+++|+++|++++|++++|+|+ ++||+
T Consensus 20 ~~gc~~~~~~~~~~~~~~~~~~~~p~~~ll~~l~~~~-----~~~wg~aIil~TiiiR~illPl~i~q~ks~~~~~~km~ 94 (256)
T PRK01622 20 LSGCSNAAPIDAHSDGFFDHYFVYPFSFLIQFVAHHI-----GGSYGIAIIIVTLIIRSLMIPLAVSQYKSQRGMQEKMA 94 (256)
T ss_pred HhccCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHh-----cccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 34565442 344677788889999999999998854 46899999999999999999999999999 89999
Q ss_pred hhhHHHHHHHHHhhc--CHH---HHHHHHHHHHHHcCCCCCc-CchHHHHHHHHHHHHHHHHHhhhhcccccccceeccC
Q 009285 152 SLAPQVKAIQERYAG--DQE---RIQLETARLYKLAGINPLA-GCLPTLATIPVWIGLYRALSNVADEGLLTEGFFWIPS 225 (538)
Q Consensus 152 ~LqPeI~kIqeKyk~--D~q---k~qqEm~kLYKe~gvNPl~-GCLP~LIQIPIFIgLY~aLr~~a~~gL~~~gFLWi~D 225 (538)
++||++++||+||++ |++ ++++|+++|||||||||++ ||+|+|+|+||||++|+++|++. ++.++||+|+ |
T Consensus 95 ~iqP~l~~iq~kyk~~~d~~~~~~~~~e~~~Lyk~~gi~P~~~g~lp~liQ~Pif~~lf~~lr~~~--~l~~~~flW~-d 171 (256)
T PRK01622 95 VMKPELDKIQAKLKVTKDLEKQKEYQKEMMELYKSGNINPLAMGCLPLLIQMPILSAFYYAIRRTE--EIASHSFLWF-N 171 (256)
T ss_pred HhCHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHhCh--hccCCCceee-C
Confidence 999999999999986 443 5789999999999999999 99999999999999999999975 4788999999 8
Q ss_pred CcCchhHhhhhcCCCccccccccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhcccCCCCcccHHHHHHHHHHHHHHH
Q 009285 226 LAGPTTIAARQNGSGISWLFPFVDGHPPLGWSDTFAYLVLPVLLVVSQYISVKIIQSSQNNDPNMKSSQALTNFLPLMIG 305 (538)
Q Consensus 226 Ls~PD~i~a~~nG~~lswl~p~~~~~~~LG~~D~lpy~ILPIL~~~s~~ls~~i~~~~q~~dP~~k~~k~mm~~MPlmi~ 305 (538)
|+.+| +|||+++++++++++++++.......+.++++.|+++||++++
T Consensus 172 Ls~~D--------------------------------~ILPil~~~~~~~~~~~~~~~~~~~~q~~~~k~m~~~~pi~~~ 219 (256)
T PRK01622 172 LGHAD--------------------------------HILPIIAGLTYFIQMKVSQSNGTSPEQVQMLKIQGIMMPAMIL 219 (256)
T ss_pred Ccchh--------------------------------HHHHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHH
Confidence 87654 6899999999999988765322112223456788899999999
Q ss_pred HHHhhhhhHhHHHHHhhhHHHHHHHHHHHHhc
Q 009285 306 YFALSVPSGLSLYWFTNNLLSTAQQVWLQKFG 337 (538)
Q Consensus 306 ~f~~~~PaGL~LYWitSNlfsIvQq~iL~k~~ 337 (538)
++++++|+||+|||++||+|+++|++++++.+
T Consensus 220 ~~~~~~Psgl~lYW~~snl~si~Q~~~l~~~~ 251 (256)
T PRK01622 220 FMSFAAPSALVLYWITGGLFLMGQTIVLRKVM 251 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999864
No 7
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=100.00 E-value=9e-49 Score=414.59 Aligned_cols=258 Identities=24% Similarity=0.329 Sum_probs=194.9
Q ss_pred hhhHHHHHHHHHHHHHhhhh-cccc--CcchHHHHHHHHHHHHhhcccccHHHHHHHHHHHhhhHHHHHHHHHhhcC---
Q 009285 94 LSGITNVMETVLKVLKDGMS-TLHV--PYAYGFAIILLTVIVKAATFPLTKKQVESSMAMRSLAPQVKAIQERYAGD--- 167 (538)
Q Consensus 94 ~~~i~~~me~vL~~L~~~L~-~ih~--~~~WGlAIIllTllVRllllPL~ikQ~ks~~KMq~LqPeI~kIqeKyk~D--- 167 (538)
+++|++|+.+++.++|+++. .+|. +++||++|+++||+||++++||+++|+++++||+.+||+|++||+||+++
T Consensus 2 ~~~~~~Pvs~vm~~~h~~~~~~~G~~~~l~W~isIi~ltiiVRliLlPL~~~q~ks~~km~~lqPel~~iq~kyk~~~d~ 81 (429)
T PRK00247 2 LDIFIYPVSGVMKLWHLLLHNVLGLDDSLAWFASLFGLVITVRAIIAPFTWQQYKSGRTAAHIRPKRKALREEYKGKTDE 81 (429)
T ss_pred ccHHHHHHHHHHHHHHHHHhccccCcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCCCH
Confidence 57899999999999999886 3443 46799999999999999999999999999999999999999999999874
Q ss_pred --HHHHHHHHHHHHHHcCCCCCcCchHHHHHHHHHHHHHHHHHhhhh--cccccccceeccCCcCchhHh---hhhcCCC
Q 009285 168 --QERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVAD--EGLLTEGFFWIPSLAGPTTIA---ARQNGSG 240 (538)
Q Consensus 168 --~qk~qqEm~kLYKe~gvNPl~GCLP~LIQIPIFIgLY~aLr~~a~--~gL~~~gFLWi~DLs~PD~i~---a~~nG~~ 240 (538)
++++++|+++|||+|||||++||||+|||||||||||++|++|+. +|+.+..+.|+.-|+.+|-.. +..+|.+
T Consensus 82 e~~~~~qqe~~~LyKe~ginP~~gcLP~LIQiPIfigLy~vir~ma~~~~Gl~~~~~~~ig~l~~~~v~sfl~a~~fGvp 161 (429)
T PRK00247 82 ASIRELQQKQKDLNKEYGYNPLAGCVPALIQIPVFLGLYQVLLRMARPEGGLENPVHQPIGFLTSEEVESFLQGRVFNVP 161 (429)
T ss_pred HHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHhccccCCccccccccccccCCHHHHHHHHhccccCCC
Confidence 356899999999999999999999999999999999999999974 456555455666666555322 3456666
Q ss_pred ccccccccC-CCCCC--CCchhHHHHHHHHHHHHH--HHHHHHHhcccC--C---CCc----ccHHHHHHHHHHHHHHHH
Q 009285 241 ISWLFPFVD-GHPPL--GWSDTFAYLVLPVLLVVS--QYISVKIIQSSQ--N---NDP----NMKSSQALTNFLPLMIGY 306 (538)
Q Consensus 241 lswl~p~~~-~~~~L--G~~D~lpy~ILPIL~~~s--~~ls~~i~~~~q--~---~dP----~~k~~k~mm~~MPlmi~~ 306 (538)
++-.+-... +..-+ +.+| +.+++||++++++ +++++.++...+ . .++ +++++..|+++||+|+++
T Consensus 162 L~~~~sm~~e~~~~~~~~~~~-v~~~ilPlii~a~vft~i~~~~s~~r~~~~~~~~~~~~~~~~k~m~~m~~~~Pim~~~ 240 (429)
T PRK00247 162 LPAYVSMPAEQLAYLGTTQAT-VLAFVLPLFIAAAVFTAINMAMSTYRSFQTNDHDSGFAVGMLKFLIVMAILAPIFPLS 240 (429)
T ss_pred cccccccchhhhhhccCCccc-hHHHHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHHhHHHHHH
Confidence 552211100 00011 2233 3478899666555 446655543211 1 122 223345566789999988
Q ss_pred HHhh--hhhHhHHHHHhhhHHHHHHHHHHHHhcCCCCCCccchhhhhh
Q 009285 307 FALS--VPSGLSLYWFTNNLLSTAQQVWLQKFGGAKDPMKQFSDIIKD 352 (538)
Q Consensus 307 f~~~--~PaGL~LYWitSNlfsIvQq~iL~k~~~~k~Plk~~~~i~k~ 352 (538)
++++ ||+||+|||++||+|+++||+++++.+..++|+.+..+....
T Consensus 241 ~g~~~~~PaallLYWv~snlwtl~Qq~i~~~~l~~~~P~~~~~~~~~~ 288 (429)
T PRK00247 241 LGLTGPFPTAIALYWVANNLWTLIQNIIMYLILERKYPLTDEFKEHHA 288 (429)
T ss_pred HHHhccchHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCCCcchHHHHH
Confidence 8776 799999999999999999999888888888898887754433
No 8
>TIGR03592 yidC_oxa1_cterm membrane protein insertase, YidC/Oxa1 family, C-terminal domain. This model describes full-length from some species, and the C-terminal region only from other species, of the YidC/Oxa1 family of proteins. This domain appears to be univeral among bacteria (although absent from Archaea). The well-characterized YidC protein from Escherichia coli and its close homologs contain a large N-terminal periplasmic domain in addition to the region modeled here.
Probab=100.00 E-value=8.2e-49 Score=373.53 Aligned_cols=181 Identities=39% Similarity=0.759 Sum_probs=167.8
Q ss_pred chHHHHHHHHHHHHhhcccccHHHHHHHHHHHhhhHHHHHHHHHhhcCHHHHHHHHHHHHHHcCCCCCcCchHHHHHHHH
Q 009285 120 AYGFAIILLTVIVKAATFPLTKKQVESSMAMRSLAPQVKAIQERYAGDQERIQLETARLYKLAGINPLAGCLPTLATIPV 199 (538)
Q Consensus 120 ~WGlAIIllTllVRllllPL~ikQ~ks~~KMq~LqPeI~kIqeKyk~D~qk~qqEm~kLYKe~gvNPl~GCLP~LIQIPI 199 (538)
|||+||+++|+++|++++|++++|+|+++||+++||++++|++||++|++++++|+++||||||+||++||+|+|+|+||
T Consensus 1 ~w~~sIi~~ti~vR~~~~Pl~~~~~~~~~km~~i~P~~~~i~~k~k~~~~~~~~e~~~l~k~~~~~p~~~~lp~liQ~Pi 80 (181)
T TIGR03592 1 NWGLAIILLTIIVRLLLLPLTLKQYKSMRKMQELQPKLKEIQEKYKDDPQKLQQEMMKLYKEEGVNPLGGCLPLLIQMPI 80 (181)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhcccccccceeccCCcCchhHhhhhcCCCccccccccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHH
Q 009285 200 WIGLYRALSNVADEGLLTEGFFWIPSLAGPTTIAARQNGSGISWLFPFVDGHPPLGWSDTFAYLVLPVLLVVSQYISVKI 279 (538)
Q Consensus 200 FIgLY~aLr~~a~~gL~~~gFLWi~DLs~PD~i~a~~nG~~lswl~p~~~~~~~LG~~D~lpy~ILPIL~~~s~~ls~~i 279 (538)
|+++|+++|++. ++.++||+||+||+.+| ||++||+++++++++++++
T Consensus 81 f~~~~~~lr~~~--~l~~~~flW~~dL~~~D------------------------------p~~iLPii~~~~~~~~~~~ 128 (181)
T TIGR03592 81 FIALYQVLRRSI--ELRHAPFLWIKDLSAPD------------------------------PYYILPILMGATMFLQQKL 128 (181)
T ss_pred HHHHHHHHHhhH--HhccCCCcCccccCccc------------------------------HHHHHHHHHHHHHHHHHHh
Confidence 999999999975 47889999999999887 7999999999999999987
Q ss_pred hcccCCCCcccHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHhhhHHHHHHHHHHHH
Q 009285 280 IQSSQNNDPNMKSSQALTNFLPLMIGYFALSVPSGLSLYWFTNNLLSTAQQVWLQK 335 (538)
Q Consensus 280 ~~~~q~~dP~~k~~k~mm~~MPlmi~~f~~~~PaGL~LYWitSNlfsIvQq~iL~k 335 (538)
..... . +.++++.|+++||+++++++.++|+|+++||++||+|+++|++++++
T Consensus 129 ~~~~~-~--~~~~~k~m~~~~p~~~~~~~~~~pa~l~lYw~~s~~~sl~Q~~~l~~ 181 (181)
T TIGR03592 129 SPSGP-P--DPAQQKIMMYIMPLMFLFFFLSFPAGLVLYWVVSNLFTIIQQLIINR 181 (181)
T ss_pred cCCCC-C--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 54322 1 22456788899999999999999999999999999999999999874
No 9
>PRK03449 putative inner membrane protein translocase component YidC; Provisional
Probab=100.00 E-value=2.6e-48 Score=396.99 Aligned_cols=233 Identities=24% Similarity=0.427 Sum_probs=181.5
Q ss_pred hhhhHHHHHHHHHHHHHhhhhcc-c--cCcchHHHHHHHHHHHHhhcccccHHHHHHHHHHHhhhHHHHHHHHHhhcCHH
Q 009285 93 WLSGITNVMETVLKVLKDGMSTL-H--VPYAYGFAIILLTVIVKAATFPLTKKQVESSMAMRSLAPQVKAIQERYAGDQE 169 (538)
Q Consensus 93 w~~~i~~~me~vL~~L~~~L~~i-h--~~~~WGlAIIllTllVRllllPL~ikQ~ks~~KMq~LqPeI~kIqeKyk~D~q 169 (538)
+++.+.+++.+++.++|+++..+ | .+.+||+|||++|++||++++|++++|+|+++||+++||++++||+||++|++
T Consensus 1 ml~~~~~P~~~~l~~~~~~~~~~l~~~~Gl~w~~aIil~TiivR~~l~Pl~i~q~ks~~km~~lqP~l~~iq~kyk~~~~ 80 (304)
T PRK03449 1 MLDFIYYPVSAILWFWHKLFSFVLGPDNGFAWALSVMFLVFTLRALLYKPFVRQIRTTRKMQELQPQIKALQKKYGNDRQ 80 (304)
T ss_pred ChhhHHHHHHHHHHHHHHHHHhhcCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHhhhhHH
Confidence 36778889999999888876532 3 35699999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCcCchHHHHHHHHHHHHHHHHHhhhhc--cccc---------------------ccceeccCC
Q 009285 170 RIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVADE--GLLT---------------------EGFFWIPSL 226 (538)
Q Consensus 170 k~qqEm~kLYKe~gvNPl~GCLP~LIQIPIFIgLY~aLr~~a~~--gL~~---------------------~gFLWi~DL 226 (538)
++++|+++|||||||||++||+|+|+|+|||+++|++||++... ++.. .+|+|.
T Consensus 81 ~~~~e~~~Lyk~~gvnP~~gclP~liQlPi~~~ly~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sFl~~--- 157 (304)
T PRK03449 81 KMALEMQKLQKEHGFNPILGCLPMLAQIPVFLGLFHVLRSFNRTGTGFGQLGMSVEENRNTPNYVFSAEDVQSFLDA--- 157 (304)
T ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccchhhccccccccccHHHHHHHhhh---
Confidence 99999999999999999999999999999999999999998542 1111 122222
Q ss_pred cCchhHhhhhcCCCcc-ccc-cc--cCCCCCCCCchh-HHHHHHHHHHHHHHHHHHHHhcccCC----CCcccH-HHHHH
Q 009285 227 AGPTTIAARQNGSGIS-WLF-PF--VDGHPPLGWSDT-FAYLVLPVLLVVSQYISVKIIQSSQN----NDPNMK-SSQAL 296 (538)
Q Consensus 227 s~PD~i~a~~nG~~ls-wl~-p~--~~~~~~LG~~D~-lpy~ILPIL~~~s~~ls~~i~~~~q~----~dP~~k-~~k~m 296 (538)
..+|.+++ |+. +. .+....++..|. +.+++|||++++++|++++++...+. .++++. +++.|
T Consensus 158 --------~~~g~pL~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Ila~v~t~~~~~~s~~~~~~~~~~~~~~~~m~k~M 229 (304)
T PRK03449 158 --------RLFGAPLSAYITMPRSGLDAFVDFTRTNIILVGVPLMIIAGVATHFNSRASVARQSAEAAANPQTAMMNKLA 229 (304)
T ss_pred --------hhcCCChHhhhcccchhhchhcccccchhHHHHHHHHHHHHHHHHHHHHHHhhccccccccCcchHHHHHHH
Confidence 23444443 221 00 000001222232 24567899999999999887543221 233333 45778
Q ss_pred HHHHHHHHHHHHhhhhhHhHHHHHhhhHHHHHHHHHHHHh
Q 009285 297 TNFLPLMIGYFALSVPSGLSLYWFTNNLLSTAQQVWLQKF 336 (538)
Q Consensus 297 m~~MPlmi~~f~~~~PaGL~LYWitSNlfsIvQq~iL~k~ 336 (538)
+++||+|++++++++|+||.|||++||+|+++||+++++.
T Consensus 230 ~~~mP~m~~~~~~~~Pagl~LYW~~snl~~i~Qq~~i~~~ 269 (304)
T PRK03449 230 LWVFPLGVLVGGPFLPLAILLYWVSNNIWTFGQQHYVFGK 269 (304)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999863
No 10
>PRK01315 putative inner membrane protein translocase component YidC; Provisional
Probab=100.00 E-value=3.8e-48 Score=399.36 Aligned_cols=241 Identities=28% Similarity=0.467 Sum_probs=184.6
Q ss_pred ccchhhhHHHHHHHHH----HHHHhhhhcc-c--cCcchHHHHHHHHHHHHhhcccccHHHHHHHHHHHhhhHHHHHHHH
Q 009285 90 NSDWLSGITNVMETVL----KVLKDGMSTL-H--VPYAYGFAIILLTVIVKAATFPLTKKQVESSMAMRSLAPQVKAIQE 162 (538)
Q Consensus 90 ~~~w~~~i~~~me~vL----~~L~~~L~~i-h--~~~~WGlAIIllTllVRllllPL~ikQ~ks~~KMq~LqPeI~kIqe 162 (538)
-.+||++|++|+++++ ..+|+++..+ + .+++||+|||++|++||++++||+++|+++++||+++||+|++||+
T Consensus 4 ~~~~~~~i~~P~~~~l~~il~~~h~ll~~~~~~~tGl~w~~aIi~~Ti~vR~~l~Pl~i~q~~~~~km~~lqPe~~~iq~ 83 (329)
T PRK01315 4 LADFGSAIMTPLYWVISGILVLFHTLLGFLFGPDSGLTWVLSIVGLVIVIRALLIPLFVKQIKSQRNMQEIQPKMKKIQE 83 (329)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHH
Confidence 3578899998877776 5567776644 2 2469999999999999999999999999999999999999999999
Q ss_pred HhhcCHHHHHHHHHHHHHHcCCCCCcCchHHHHHHHHHHHHHHHHHhhhhcccccccceeccCCcCchhHhhhhcCCCcc
Q 009285 163 RYAGDQERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGFFWIPSLAGPTTIAARQNGSGIS 242 (538)
Q Consensus 163 Kyk~D~qk~qqEm~kLYKe~gvNPl~GCLP~LIQIPIFIgLY~aLr~~a~~gL~~~gFLWi~DLs~PD~i~a~~nG~~ls 242 (538)
||++|++++++|+++|||+|||||++||+|+|+|+||||++|++|++++..+ ..-.+|.+++...- ..+..+|.+++
T Consensus 84 kyk~~~~~~~~e~~~Lykk~ginp~~gclp~liQ~Pif~alf~~l~~~~~~~--~~~~~~~~~~~~s~-~~~~~fg~~L~ 160 (329)
T PRK01315 84 KYKGDRERMSQEMMKLYKETGTNPLSSCLPLLLQMPIFFALYRVLDSAASRG--DGIGPINPPLLESF-RHAHIFGAPLA 160 (329)
T ss_pred HHHhHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcc--ccccchhhhHHHhh-hcccccccccc
Confidence 9999999999999999999999999999999999999999999999865421 11223443332110 00112232222
Q ss_pred c-cc-cccCCCCCCCCch-hHHHHHHHHHHHHHHHHHHHH-hccc----CCCCcccHHHHHHHHHHHHHHHHHHhhhhhH
Q 009285 243 W-LF-PFVDGHPPLGWSD-TFAYLVLPVLLVVSQYISVKI-IQSS----QNNDPNMKSSQALTNFLPLMIGYFALSVPSG 314 (538)
Q Consensus 243 w-l~-p~~~~~~~LG~~D-~lpy~ILPIL~~~s~~ls~~i-~~~~----q~~dP~~k~~k~mm~~MPlmi~~f~~~~PaG 314 (538)
. ++ ++. .|..+ .+.++|||+++++++|++++. +.+. +..+|..++++.|+++||+|+++++++||+|
T Consensus 161 ~~f~~~~~-----~~~~~~~ii~~iL~il~~~~~~~~q~~~~~k~~~~~~~~~~~~~~~K~M~~imPim~~~~~~~fPaG 235 (329)
T PRK01315 161 ATFLQALN-----AGNTAVQVVAAVLIILMSASQFITQLQLMTKNMPPEAKTGPMAQQQKMLLYLFPLMFLVSGIAFPVG 235 (329)
T ss_pred cccccccc-----ccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 11 111 12222 346789999999999987653 3221 1234555667889999999999999999999
Q ss_pred hHHHHHhhhHHHHHHHHHHHHhcC
Q 009285 315 LSLYWFTNNLLSTAQQVWLQKFGG 338 (538)
Q Consensus 315 L~LYWitSNlfsIvQq~iL~k~~~ 338 (538)
|+|||++||+|+++||+++.+.+.
T Consensus 236 L~LYW~~snl~si~Qq~~v~r~~p 259 (329)
T PRK01315 236 VLFYWLTSNVWTMGQQFYVIRNNP 259 (329)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999887553
No 11
>PRK02201 putative inner membrane protein translocase component YidC; Provisional
Probab=100.00 E-value=1.1e-47 Score=399.33 Aligned_cols=223 Identities=18% Similarity=0.355 Sum_probs=183.4
Q ss_pred ccchhhhHHHHHHHHHHHHHhhhh-ccccCcchHHHHHHHHHHHHhhcccccHHHHHHHHHHHhhhHHHHHHHHHhhcC-
Q 009285 90 NSDWLSGITNVMETVLKVLKDGMS-TLHVPYAYGFAIILLTVIVKAATFPLTKKQVESSMAMRSLAPQVKAIQERYAGD- 167 (538)
Q Consensus 90 ~~~w~~~i~~~me~vL~~L~~~L~-~ih~~~~WGlAIIllTllVRllllPL~ikQ~ks~~KMq~LqPeI~kIqeKyk~D- 167 (538)
.|.|++.|++|+.+++.+++.... ....+.+||+|||++|++||++++|++++|+++++||+++||+|++||+||++|
T Consensus 101 ~G~f~~~~v~P~~~il~~i~~~~~~~~~~G~~w~laII~~TiivRlillPl~~k~~~s~~km~~lqPel~~Iq~Kyk~~~ 180 (357)
T PRK02201 101 YGPFYGLFVYPIAQIILSIMASQSLSELYGWSTILAIIVVVLIIRLISFLITFKSTFNQEKQEELQGKKAKIDAKYKDYK 180 (357)
T ss_pred cchHHHHHHHHHHHHHHHHHHhccccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhccc
Confidence 455888999999999998862111 112356899999999999999999999999999999999999999999999876
Q ss_pred -----HHHHHHHHHHHHHHcCCCCCcCchHHHHHHHHHHHHHHHHHhhhhcccccccceeccCCcCchhHhhhhcCCCcc
Q 009285 168 -----QERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGFFWIPSLAGPTTIAARQNGSGIS 242 (538)
Q Consensus 168 -----~qk~qqEm~kLYKe~gvNPl~GCLP~LIQIPIFIgLY~aLr~~a~~gL~~~gFLWi~DLs~PD~i~a~~nG~~ls 242 (538)
++++|+|+++|||||||||++||+|+|+|+|||+|+|++++.+.+ +...+|+|+ ||+.+|..
T Consensus 181 ~d~~~~~k~q~e~~~Lykk~ginP~~gclP~LiQ~Pif~aly~vl~~~~~--l~~~~flgi-dLs~~~~~---------- 247 (357)
T PRK02201 181 KDKQMKQRKQQEIQELYKKHNISPFSPFVQMFVTLPIFIAVYRVVQSLPS--IKVTTWLGI-DLSATSWQ---------- 247 (357)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhHh--hccCCCccc-ccCCCChh----------
Confidence 678999999999999999999999999999999999999998864 667899999 99887621
Q ss_pred ccccccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhcc----cC-----CC--CcccHHHHHHHHHHHHHHHHHHhhh
Q 009285 243 WLFPFVDGHPPLGWSDTFAYLVLPVLLVVSQYISVKIIQS----SQ-----NN--DPNMKSSQALTNFLPLMIGYFALSV 311 (538)
Q Consensus 243 wl~p~~~~~~~LG~~D~lpy~ILPIL~~~s~~ls~~i~~~----~q-----~~--dP~~k~~k~mm~~MPlmi~~f~~~~ 311 (538)
.+ +.+.++|+++++++++++++++.+++. .+ +. .++++.++.|+.+||++++++++++
T Consensus 248 ~~-----------~~~~~~~l~l~ii~~~~~~ls~~l~~~l~~kk~~~~~~~~~~~~~~k~~~~m~~impi~~~~~~~~~ 316 (357)
T PRK02201 248 EI-----------FAGNWIYLPILIIVVPVQALSQLLPQILNKKKNKERTLNVKEKEALKKQNKTQNIISIVFIFFGVIF 316 (357)
T ss_pred hh-----------ccccchHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 122336777888888777777655321 11 11 1223456789999999999999999
Q ss_pred hhHhHHHHHhhhHHHHHHHHHHHHh
Q 009285 312 PSGLSLYWFTNNLLSTAQQVWLQKF 336 (538)
Q Consensus 312 PaGL~LYWitSNlfsIvQq~iL~k~ 336 (538)
|+||.|||++||+|+++||++++++
T Consensus 317 PaGL~LYW~~snl~tI~Qq~~i~~~ 341 (357)
T PRK02201 317 AAGVQIYWIIGGIWTILQTLGIHYF 341 (357)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999863
No 12
>COG0706 YidC Preprotein translocase subunit YidC [Intracellular trafficking and secretion]
Probab=100.00 E-value=1.1e-47 Score=394.31 Aligned_cols=210 Identities=34% Similarity=0.636 Sum_probs=180.7
Q ss_pred ccchhhhHHHHHHHHHHHHHhhhhccccCcchHHHHHHHHHHHHhhcccccHHHHHHHHHHHhhhHHHHHHHHHhh-cCH
Q 009285 90 NSDWLSGITNVMETVLKVLKDGMSTLHVPYAYGFAIILLTVIVKAATFPLTKKQVESSMAMRSLAPQVKAIQERYA-GDQ 168 (538)
Q Consensus 90 ~~~w~~~i~~~me~vL~~L~~~L~~ih~~~~WGlAIIllTllVRllllPL~ikQ~ks~~KMq~LqPeI~kIqeKyk-~D~ 168 (538)
.-+|+..+..++-.++.+++.+ .+.+||++||++|++||++++|++.+|+++++||+++||++++||+||+ +|+
T Consensus 84 ~~~~f~~~~~~~~~~~~~~~~~-----~g~n~G~sIi~~ti~vRl~i~Pl~~~~~~s~~km~~lqP~~~~i~~kyk~~~~ 158 (314)
T COG0706 84 DYGWFWNILAPLFPLLLFIDSF-----SGLNWGLSIILLTIIVRLLIFPLSQKSTRSMAKMQELQPKIKEIQEKYKGTDK 158 (314)
T ss_pred chhhHHHHHHHHHHHHHHHHHh-----cCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhHHHHHHHhCCCCH
Confidence 3455555555555566666432 2339999999999999999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHHHHcCCCCCcCchHHHHHHHHHHHHHHHHHhhhhcccccccce-eccCCcCchhHhhhhcCCCccccccc
Q 009285 169 ERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGFF-WIPSLAGPTTIAARQNGSGISWLFPF 247 (538)
Q Consensus 169 qk~qqEm~kLYKe~gvNPl~GCLP~LIQIPIFIgLY~aLr~~a~~gL~~~gFL-Wi~DLs~PD~i~a~~nG~~lswl~p~ 247 (538)
+++|+|||+|||+|||||++||+|+|+|+||||++|+++++..+ +...+|+ |+.||+.+|
T Consensus 159 ~~~q~e~~~Lyk~~~vnPl~gclP~liQ~Pifialy~~l~~~~~--l~~~~f~~w~~dl~~~d----------------- 219 (314)
T COG0706 159 QKQQQEMMKLYKKHKVNPLAGCLPLLIQMPIFIALYYVLRSTVE--LRGAPFLGWITDLSLPD----------------- 219 (314)
T ss_pred HHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHhccc--ccccchhhhhhcccCCC-----------------
Confidence 99999999999999999999999999999999999999998865 5566776 999998887
Q ss_pred cCCCCCCCCchhHHHH--HHHHHHHHHHHHHHHHhcccCCCCcccHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHhhhHH
Q 009285 248 VDGHPPLGWSDTFAYL--VLPVLLVVSQYISVKIIQSSQNNDPNMKSSQALTNFLPLMIGYFALSVPSGLSLYWFTNNLL 325 (538)
Q Consensus 248 ~~~~~~LG~~D~lpy~--ILPIL~~~s~~ls~~i~~~~q~~dP~~k~~k~mm~~MPlmi~~f~~~~PaGL~LYWitSNlf 325 (538)
|++ +|||++++++|++++++..... +++.+++++|+++||++|.++++++|+||+|||++||+|
T Consensus 220 -------------p~~~~~~pii~gv~~f~q~~ls~~~~~-~~q~~~~~~~~~impi~f~~~~~~~PaGL~LYW~~~n~f 285 (314)
T COG0706 220 -------------PDYILLLPILAGVTMFLQQKLSPRNLS-TPQDPQQKKMMYIMPIIFTFFFFNFPAGLVLYWIVSNLF 285 (314)
T ss_pred -------------CchhhHHHHHHHHHHHHHHHhccccCC-cccCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHH
Confidence 334 6699999999999998654322 333347889999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc
Q 009285 326 STAQQVWLQKFG 337 (538)
Q Consensus 326 sIvQq~iL~k~~ 337 (538)
+++||+++++.+
T Consensus 286 si~Qq~ii~~~~ 297 (314)
T COG0706 286 SILQQYILNKPL 297 (314)
T ss_pred HHHHHHHHhhhh
Confidence 999999999753
No 13
>PF02096 60KD_IMP: 60Kd inner membrane protein; InterPro: IPR001708 This family of proteins is required for the insertion of integral membrane proteins into cellular membranes. Many of these integral membrane proteins are associated with respiratory chain complexes, for example a large number of members of this family play an essential role in the activity and assembly of cytochrome c oxidase. Stage III sporulation protein J (SP3J) is a probable lipoprotein, rich in basic and hydrophobic amino acids. Mutations in the protein abolish the transcription of prespore-specific genes transcribed by the sigma G form of RNA polymerase []. SP3J could be involved in a signal transduction pathway coupling gene expression in the prespore to events in the mother cell, or it may be necessary for essential metabolic interactions between the two cells []. The protein shows a high degree of similarity to Bacillus subtilis YQJG, to yeast OXA1 and also to bacterial 60 kDa inner-membrane proteins [, , , ]. ; GO: 0051205 protein insertion into membrane, 0016021 integral to membrane
Probab=100.00 E-value=2.2e-47 Score=365.62 Aligned_cols=194 Identities=39% Similarity=0.717 Sum_probs=176.5
Q ss_pred cchHHHHHHHHHHHHhhcccccHHHHHHHHHHHhhhHHHHHHHHHhhcCHHHHHHHHHHHHHHcCCCCCcCchHHHHHHH
Q 009285 119 YAYGFAIILLTVIVKAATFPLTKKQVESSMAMRSLAPQVKAIQERYAGDQERIQLETARLYKLAGINPLAGCLPTLATIP 198 (538)
Q Consensus 119 ~~WGlAIIllTllVRllllPL~ikQ~ks~~KMq~LqPeI~kIqeKyk~D~qk~qqEm~kLYKe~gvNPl~GCLP~LIQIP 198 (538)
+|||+||+++|+++|++++|++++|+|+++||++++|++++||+||++|++++++|++++|||||+||++||+|+|+|+|
T Consensus 1 ~sW~~aIil~ti~vR~~~~Pl~i~~~~~~~k~~~~~P~l~~i~~k~~~~~~~~~~~~~~l~k~~~~~p~~~~~~~liq~P 80 (198)
T PF02096_consen 1 GSWGLAIILTTILVRLILLPLSIKQQRSSAKMQELQPELKEIQEKYKEDQQKMQQEMQKLYKKHGVNPLKGCLPPLIQIP 80 (198)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhh-cccccccceeccCCcCchhHhhhhcCCCccccccccCCCCCCCCchhHHHHHHHHHHHHHHHHHH
Q 009285 199 VWIGLYRALSNVAD-EGLLTEGFFWIPSLAGPTTIAARQNGSGISWLFPFVDGHPPLGWSDTFAYLVLPVLLVVSQYISV 277 (538)
Q Consensus 199 IFIgLY~aLr~~a~-~gL~~~gFLWi~DLs~PD~i~a~~nG~~lswl~p~~~~~~~LG~~D~lpy~ILPIL~~~s~~ls~ 277 (538)
|||++|+++|+++. +++.++||+|++||+.||.. ..+||+|||+++++++++++
T Consensus 81 if~~~~~~lr~~~~~~~~~~~g~lw~~dL~~~D~~-------------------------~~~p~~iLPil~~~~~~~~~ 135 (198)
T PF02096_consen 81 IFIGLFRALRRMAEVPSLATGGFLWFPDLTAPDPT-------------------------MGLPYFILPILAGASMFLNQ 135 (198)
T ss_pred HHHHHHHHHHHHHHhcccccCceeChHhcCCCCcc-------------------------chhHHHHHHHHHHHHHHHHH
Confidence 99999999999876 67888999999999999831 12489999999999999999
Q ss_pred HHhcc--cCCCCcccHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHhhhHHHHHHHHHHHHhc
Q 009285 278 KIIQS--SQNNDPNMKSSQALTNFLPLMIGYFALSVPSGLSLYWFTNNLLSTAQQVWLQKFG 337 (538)
Q Consensus 278 ~i~~~--~q~~dP~~k~~k~mm~~MPlmi~~f~~~~PaGL~LYWitSNlfsIvQq~iL~k~~ 337 (538)
++..+ .....+..+.++.|+++||+++++++.++|+|+.+||++||+|+++|++++++.+
T Consensus 136 ~~~~~~~~~~~~~~~~~~k~m~~~~~~~~~~~~~~~Paal~lYw~~s~~~~l~Q~~~l~~~~ 197 (198)
T PF02096_consen 136 ELSMKNSKQKSPQQAKMMKIMLYIMPLMFLFFTSFFPAALFLYWITSNLFSLLQTLILRRPF 197 (198)
T ss_pred HHHHhccccCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 98653 2222344557788999999999999999999999999999999999999999864
No 14
>PRK02654 putative inner membrane protein translocase component YidC; Provisional
Probab=100.00 E-value=4.7e-38 Score=321.63 Aligned_cols=241 Identities=27% Similarity=0.482 Sum_probs=165.5
Q ss_pred chhhhHHHHHHHHHHHHHhhhhccccCcchHHHHHHHHHHHHhhcccccHHHHHHHHHHHhhhHHHH----HHHHHhhcC
Q 009285 92 DWLSGITNVMETVLKVLKDGMSTLHVPYAYGFAIILLTVIVKAATFPLTKKQVESSMAMRSLAPQVK----AIQERYAGD 167 (538)
Q Consensus 92 ~w~~~i~~~me~vL~~L~~~L~~ih~~~~WGlAIIllTllVRllllPL~ikQ~ks~~KMq~LqPeI~----kIqeKyk~D 167 (538)
||.....+++..++++++.+ ..+||+|||++|++||++++||+++|+|+++||+.+||+|+ +||+||++|
T Consensus 4 G~g~i~~~il~~iL~f~y~~------vgswGlAIIllTIIVRlIL~PLsikQ~KS~~KM~~LQPemqkk~~eIqeKYKdD 77 (375)
T PRK02654 4 GIGFISNNVMLPILDFFYGI------VPSYGLAIVALTLVIRFALYPLSAGSIRNMRRMKIAQPVMQKRQAEIQERYKND 77 (375)
T ss_pred chHHHHHhHHHHHHHHHHHh------cchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCchhhhHHHHHHHHhcCC
Confidence 45333445677777777763 24899999999999999999999999999999999999985 799999999
Q ss_pred HHHHHHHHHHHHHHcCCCCCcCchHHHHHHHHHHHHHHHHHhhhhcc-----------------cccccc------eecc
Q 009285 168 QERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVADEG-----------------LLTEGF------FWIP 224 (538)
Q Consensus 168 ~qk~qqEm~kLYKe~gvNPl~GCLP~LIQIPIFIgLY~aLr~~a~~g-----------------L~~~gF------LWi~ 224 (538)
++++|+|||+|||||| ||++||||+|||||||++||++||...... +....| .++.
T Consensus 78 pqk~QqEmmkLYKE~G-NPlaGCLP~LIQmPIF~aLY~~LR~spf~~~~y~~~l~i~p~~qi~~v~~~~~~~~~~~i~~~ 156 (375)
T PRK02654 78 PQKQQEEMGKLMKEFG-NPLAGCLPLLVQMPILFALFATLRGSPFADVNYTVNLQVLPSEQIAAVQPQPFKSKPQNIFIT 156 (375)
T ss_pred HHHHHHHHHHHHHHcC-CChhhHHHHHHHHHHHHHHHHHHHhCccccccceeecccCCHHHHhhhcCCCcCCCCceEEEe
Confidence 9999999999999999 999999999999999999999999842100 000000 0111
Q ss_pred CCc-------Cc--------hhHh---hhhcCCCc--------------cccc---------------------------
Q 009285 225 SLA-------GP--------TTIA---ARQNGSGI--------------SWLF--------------------------- 245 (538)
Q Consensus 225 DLs-------~P--------D~i~---a~~nG~~l--------------swl~--------------------------- 245 (538)
|-. .| +... ....|.++ .|-+
T Consensus 157 ~~~h~~~~a~~p~g~k~~vg~~~~~~~q~~~g~~~~~~~~~~~~~~~~p~~~v~kg~~~~~~~~~g~~~al~pgd~ti~~ 236 (375)
T PRK02654 157 DGVHFPVIASLPGGTKLGVGESVKIQLQTTEGKPFSQLLAEYPNSKLSPTWKVTKGEERVKVSEDGTIEALAPGDATIQG 236 (375)
T ss_pred cCccceEEEEcCCCCcccccceeEEEEecCCCCcHHHHHhcCCccccCceeEEecCceeEEECCCCcEEEecCCceEEEE
Confidence 100 00 0000 00011111 0111
Q ss_pred --c---------ccCCCCCCCCc--hh---HHHHHHHHHHHHHHHHHHHHhcccCCCCcccHHHHHHHHHHHHHHHHHH-
Q 009285 246 --P---------FVDGHPPLGWS--DT---FAYLVLPVLLVVSQYISVKIIQSSQNNDPNMKSSQALTNFLPLMIGYFA- 308 (538)
Q Consensus 246 --p---------~~~~~~~LG~~--D~---lpy~ILPIL~~~s~~ls~~i~~~~q~~dP~~k~~k~mm~~MPlmi~~f~- 308 (538)
| |+...+..|.. |- |-..++-+..+++.|++..++....+.+| +++.+..+.|+||.-++
T Consensus 237 ~ipg~aa~~gflfi~alg~vg~~~~dg~i~wdi~~mi~~fg~sl~~~q~lsg~~~~~~~---qq~t~nkitpv~~sgmfl 313 (375)
T PRK02654 237 TIPGLAANSGFLFIKALGQVGFYDVDGAINWDILIMVLGFGVSLYLSQVLSGQGMPANP---QQSTANKITPVMFSGMFL 313 (375)
T ss_pred eecceecccCceehHhhcccCccCCCCceeHHHHHHHHHhhhhhhhhHhhhcCCCCCCh---hHHHHHhhhhHHHhhhHh
Confidence 0 00000112211 11 22345556667889998877644444444 46678899999986544
Q ss_pred -hhhhhHhHHHHHhhhHHHHHHHHHHHHhcCCCCCCccch
Q 009285 309 -LSVPSGLSLYWFTNNLLSTAQQVWLQKFGGAKDPMKQFS 347 (538)
Q Consensus 309 -~~~PaGL~LYWitSNlfsIvQq~iL~k~~~~k~Plk~~~ 347 (538)
+-+|+|+.+||++.|+|..+|+++|.| .||.+-.
T Consensus 314 ffplpagvllym~ianifq~~qt~~l~r-----eplpenl 348 (375)
T PRK02654 314 FFPLPAGVLLYMVIANIFQTLQTFLLSR-----EPLPENL 348 (375)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHhc-----CcChHHH
Confidence 447899999999999999999999984 7776655
No 15
>KOG1239 consensus Inner membrane protein translocase involved in respiratory chain assembly [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=5.5e-21 Score=201.12 Aligned_cols=196 Identities=20% Similarity=0.373 Sum_probs=162.1
Q ss_pred HHHHHHHHHHhhhhccccCcchHHHHHHHHHHHHhhcccccHHHHHHHHHHHhhhHHHHHHHHHhhc---C---HHHHHH
Q 009285 100 VMETVLKVLKDGMSTLHVPYAYGFAIILLTVIVKAATFPLTKKQVESSMAMRSLAPQVKAIQERYAG---D---QERIQL 173 (538)
Q Consensus 100 ~me~vL~~L~~~L~~ih~~~~WGlAIIllTllVRllllPL~ikQ~ks~~KMq~LqPeI~kIqeKyk~---D---~qk~qq 173 (538)
.+...+.-+|. +.+.+||.+|+..|+.+|.+++|+.+.+.|+.+|+..+.|+|.++.++... | ....++
T Consensus 86 ~lq~~l~~~h~-----~~g~pww~~i~~~t~~ir~~i~~~~~~~~~~~akls~~~~~mp~~~~~l~~a~~~~~~~~~~q~ 160 (372)
T KOG1239|consen 86 TLQNELERLHV-----YSGLPWWASIVATTVLIRSLITPLLTNSQKNEAKLSKIFPEMPSLGEELGEAAQDNNALLSWQE 160 (372)
T ss_pred HHHHHHHHHHH-----HhCCcchHHHHHhHhhHhhhhhhHHHhhhhHHHHHhhcCcccHHHHHHHHhhhccccchHHHHH
Confidence 34444555554 235699999999999999999999999999999999999999999998854 2 124567
Q ss_pred HHHHHHHHcCCCCCcCchHHHHHHHHHHHHHHHHHhhhh--cccccccceeccCCcCchhHhhhhcCCCccccccccCCC
Q 009285 174 ETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVAD--EGLLTEGFFWIPSLAGPTTIAARQNGSGISWLFPFVDGH 251 (538)
Q Consensus 174 Em~kLYKe~gvNPl~GCLP~LIQIPIFIgLY~aLr~~a~--~gL~~~gFLWi~DLs~PD~i~a~~nG~~lswl~p~~~~~ 251 (538)
|++++|++||++| ....-+++|.|+|++.|.+||.|+. +++.+++++||+||+.+|
T Consensus 161 ~~~~l~~~~~v~~-~~l~~~v~q~~l~~sff~air~ma~~v~~f~t~g~~wf~dLt~~d--------------------- 218 (372)
T KOG1239|consen 161 EQKLLVKKYGVKP-KQLALPVVQGPLFISFFMAIRVMAVPVPSFTTGGLLWFPDLTGPD--------------------- 218 (372)
T ss_pred HHHhhhhhcCCCc-chhhhhhhcchhHHHHHHHHHHhhccccccchhhHHhcccccccC---------------------
Confidence 8999999999999 9888888999999999999999974 467778999999999887
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHHHhcc-cCCCCcccHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHhhhHHHHHHH
Q 009285 252 PPLGWSDTFAYLVLPVLLVVSQYISVKIIQS-SQNNDPNMKSSQALTNFLPLMIGYFALSVPSGLSLYWFTNNLLSTAQQ 330 (538)
Q Consensus 252 ~~LG~~D~lpy~ILPIL~~~s~~ls~~i~~~-~q~~dP~~k~~k~mm~~MPlmi~~f~~~~PaGL~LYWitSNlfsIvQq 330 (538)
|++++|+++.++++..++.... ..........++.+++++|+++..+..++|+|++.||+ |+++|.
T Consensus 219 ---------p~~ilp~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~t~~~~~a~~~ywl----~s~~~~ 285 (372)
T KOG1239|consen 219 ---------PLYILPGITLATLTLFIELGAETGLSSSKLLPAMKSFIRILPLLSLASTMQFPSAIFVYWL----FSLVQG 285 (372)
T ss_pred ---------cchhhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHhhhhhhhhhhhhhhhHHhhhh----hHHHHH
Confidence 7899999999998887776322 11122233356788999999999999999999999999 999999
Q ss_pred HHHHH
Q 009285 331 VWLQK 335 (538)
Q Consensus 331 ~iL~k 335 (538)
.+++.
T Consensus 286 ~vlr~ 290 (372)
T KOG1239|consen 286 LVLRS 290 (372)
T ss_pred HHhHH
Confidence 99763
No 16
>KOG1239 consensus Inner membrane protein translocase involved in respiratory chain assembly [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.09 E-value=1.1e-10 Score=123.53 Aligned_cols=239 Identities=21% Similarity=0.233 Sum_probs=208.6
Q ss_pred ccchhhhHHHHHHHHHHHHHhhhhccccCcchHHHHHHHHHHHHhhcccccHHHHHHHHHHHhhhHHHHHHHHHhhcCHH
Q 009285 90 NSDWLSGITNVMETVLKVLKDGMSTLHVPYAYGFAIILLTVIVKAATFPLTKKQVESSMAMRSLAPQVKAIQERYAGDQE 169 (538)
Q Consensus 90 ~~~w~~~i~~~me~vL~~L~~~L~~ih~~~~WGlAIIllTllVRllllPL~ikQ~ks~~KMq~LqPeI~kIqeKyk~D~q 169 (538)
...|+..+...++..+..+.......|..+.++.++...|+++.+...|+...+..+..-|..++|....+...+...+.
T Consensus 4 ~~~~~~~~~~~~~~~l~l~~~~~r~~s~~~~~~~~~~~~t~~~~~~~~p~~~~~~~s~~v~~~~~~~~~~~~~~~~~~~p 83 (372)
T KOG1239|consen 4 SNLWFFAISSLQEMRLFLLRPSCRSVSSPGFSGFSVFLRTILVKLTNSPLSQPEASSTSVVATVSPIIEGILLALSSWRP 83 (372)
T ss_pred cccCchhhhhhhhHHHhhhcccccccccCCcccccccceeeccccccCCCCcCcccchHHHHhhchhHHHHHHHhcccCc
Confidence 57788888888888888888888888888899999999999999999999999999999999999999999888887665
Q ss_pred --HHHHHHHHHHHHcCCCCCcCchHHHHHHHHHHHHHHHHHhhhhcccccccceeccCCcCchhHhhhhcCCCccccccc
Q 009285 170 --RIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGFFWIPSLAGPTTIAARQNGSGISWLFPF 247 (538)
Q Consensus 170 --k~qqEm~kLYKe~gvNPl~GCLP~LIQIPIFIgLY~aLr~~a~~gL~~~gFLWi~DLs~PD~i~a~~nG~~lswl~p~ 247 (538)
.+|.++..+|+-.|++++++|++..+-||..++.|++.+. ......+.++.|++.+..+-..++..++..++|..++
T Consensus 84 ~~~lq~~l~~~h~~~g~pww~~i~~~t~~ir~~i~~~~~~~~-~~~akls~~~~~mp~~~~~l~~a~~~~~~~~~~q~~~ 162 (372)
T KOG1239|consen 84 VATLQNELERLHVYSGLPWWASIVATTVLIRSLITPLLTNSQ-KNEAKLSKIFPEMPSLGEELGEAAQDNNALLSWQEEQ 162 (372)
T ss_pred hhHHHHHHHHHHHHhCCcchHHHHHhHhhHhhhhhhHHHhhh-hHHHHHhhcCcccHHHHHHHHhhhccccchHHHHHHH
Confidence 8999999999999999999999999999999999999986 3334556788999988887777777788899999998
Q ss_pred cCCCCCCCCc-hhHHHHHHHHHHHHHHHHHHHHhcccCCCCcccHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHhhhHHH
Q 009285 248 VDGHPPLGWS-DTFAYLVLPVLLVVSQYISVKIIQSSQNNDPNMKSSQALTNFLPLMIGYFALSVPSGLSLYWFTNNLLS 326 (538)
Q Consensus 248 ~~~~~~LG~~-D~lpy~ILPIL~~~s~~ls~~i~~~~q~~dP~~k~~k~mm~~MPlmi~~f~~~~PaGL~LYWitSNlfs 326 (538)
...+.+.|+. +.+.+.+++..+.++.|+.++.|..+....+. ....++|-+..+..+..+.++.+||+++++..
T Consensus 163 ~~l~~~~~v~~~~l~~~v~q~~l~~sff~air~ma~~v~~f~t-----~g~~wf~dLt~~dp~~ilp~it~~~~~~~~~~ 237 (372)
T KOG1239|consen 163 KLLVKKYGVKPKQLALPVVQGPLFISFFMAIRVMAVPVPSFTT-----GGLLWFPDLTGPDPLYILPGITLATLTLFIEL 237 (372)
T ss_pred HhhhhhcCCCcchhhhhhhcchhHHHHHHHHHHhhccccccch-----hhHHhcccccccCcchhhHHHHHHHHHHHHHH
Confidence 8888889998 99999999999999999999998754443322 26667888888888889999999999999999
Q ss_pred HHHHHHHH
Q 009285 327 TAQQVWLQ 334 (538)
Q Consensus 327 IvQq~iL~ 334 (538)
-.|+....
T Consensus 238 ~~~~~~~~ 245 (372)
T KOG1239|consen 238 GAETGLSS 245 (372)
T ss_pred HHHhhhhc
Confidence 99988877
No 17
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=94.66 E-value=0.67 Score=50.90 Aligned_cols=60 Identities=15% Similarity=0.124 Sum_probs=37.7
Q ss_pred ccHHHHHHHHHHHHHHH--------HHHhhhhhHhHHHHHhhhHHHHHHHHHHHHhcCCCCCCccchhhhhhh
Q 009285 289 NMKSSQALTNFLPLMIG--------YFALSVPSGLSLYWFTNNLLSTAQQVWLQKFGGAKDPMKQFSDIIKDE 353 (538)
Q Consensus 289 ~~k~~k~mm~~MPlmi~--------~f~~~~PaGL~LYWitSNlfsIvQq~iL~k~~~~k~Plk~~~~i~k~~ 353 (538)
.+..+..++-+|+++++ ++.+++.+++ ++-+=+++...+++++|.-.++..+..+..+..
T Consensus 226 ~m~~m~~~~Pim~~~~g~~~~~PaallLYWv~snl-----wtl~Qq~i~~~~l~~~~P~~~~~~~~~~~~~~~ 293 (429)
T PRK00247 226 FLIVMAILAPIFPLSLGLTGPFPTAIALYWVANNL-----WTLIQNIIMYLILERKYPLTDEFKEHHAEQRAQ 293 (429)
T ss_pred HHHHHHHHhHHHHHHHHHhccchHHHHHHHHHhhH-----HHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHH
Confidence 34455555555554432 3345566664 234455666789999999999999988655543
No 18
>COG1422 Predicted membrane protein [Function unknown]
Probab=93.84 E-value=0.44 Score=47.34 Aligned_cols=88 Identities=17% Similarity=0.158 Sum_probs=47.3
Q ss_pred cchHHHHHHHHHHHHhhcccccHHHHHHHHHHHhhhHHHHHHHHHhhc-----CHH---HH---HHHHHHHHHHcCCCCC
Q 009285 119 YAYGFAIILLTVIVKAATFPLTKKQVESSMAMRSLAPQVKAIQERYAG-----DQE---RI---QLETARLYKLAGINPL 187 (538)
Q Consensus 119 ~~WGlAIIllTllVRllllPL~ikQ~ks~~KMq~LqPeI~kIqeKyk~-----D~q---k~---qqEm~kLYKe~gvNPl 187 (538)
.+.-++|+++.+++=+.+ =+..+=.-...||+++|-++++.|++++. |.. |+ |.|++....+-=-+
T Consensus 44 ~~p~lvilV~avi~gl~~-~i~~~~liD~ekm~~~qk~m~efq~e~~eA~~~~d~~~lkkLq~~qmem~~~Q~elmk~-- 120 (201)
T COG1422 44 LPPHLVILVAAVITGLYI-TILQKLLIDQEKMKELQKMMKEFQKEFREAQESGDMKKLKKLQEKQMEMMDDQRELMKM-- 120 (201)
T ss_pred cccHHHHHHHHHHHHHHH-HHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 345566666666654332 22223334468999999999999988742 432 33 33444443332111
Q ss_pred cCchHHHHHHHHHHHHHHHHHhh
Q 009285 188 AGCLPTLATIPVWIGLYRALSNV 210 (538)
Q Consensus 188 ~GCLP~LIQIPIFIgLY~aLr~~ 210 (538)
.+-||+.++++.|-+|-=++..
T Consensus 121 -qfkPM~~~~v~tI~~F~Wl~~~ 142 (201)
T COG1422 121 -QFKPMLYISVLTIPFFAWLRWF 142 (201)
T ss_pred -hhhhHHHHHHHHHHHHHHHHHH
Confidence 3446666655555555444443
No 19
>PRK01315 putative inner membrane protein translocase component YidC; Provisional
Probab=75.50 E-value=1.2e+02 Score=32.53 Aligned_cols=111 Identities=18% Similarity=0.225 Sum_probs=55.1
Q ss_pred hhHHHHHHHHHHHHHhhhhccccCcchHHHH---------HHHHHHHHhhcccccH--HHHHHHHHHHhhhHHHHHHHHH
Q 009285 95 SGITNVMETVLKVLKDGMSTLHVPYAYGFAI---------ILLTVIVKAATFPLTK--KQVESSMAMRSLAPQVKAIQER 163 (538)
Q Consensus 95 ~~i~~~me~vL~~L~~~L~~ih~~~~WGlAI---------IllTllVRllllPL~i--kQ~ks~~KMq~LqPeI~kIqeK 163 (538)
+++.+.+..++.++.+.++.+-..+.|.+.- ..++|++=.+++-+.+ -..++++.++ +|++||-+
T Consensus 2 ~~~~~~~~~i~~P~~~~l~~il~~~h~ll~~~~~~~tGl~w~~aIi~~Ti~vR~~l~Pl~i~q~~~~~----km~~lqPe 77 (329)
T PRK01315 2 DGLADFGSAIMTPLYWVISGILVLFHTLLGFLFGPDSGLTWVLSIVGLVIVIRALLIPLFVKQIKSQR----NMQEIQPK 77 (329)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHccHH
Confidence 4567778888888877775442222232221 2233433334444433 3444444443 34445544
Q ss_pred hhcCHHHHHHHHH----HHHHHcCCCCCcCchHHHHHHHHHH--HHHHHHHhhhh
Q 009285 164 YAGDQERIQLETA----RLYKLAGINPLAGCLPTLATIPVWI--GLYRALSNVAD 212 (538)
Q Consensus 164 yk~D~qk~qqEm~----kLYKe~gvNPl~GCLP~LIQIPIFI--gLY~aLr~~a~ 212 (538)
.+.=+++.+...+ +..+-|.= .||=|+---+|+++ =+|.++.++..
T Consensus 78 ~~~iq~kyk~~~~~~~~e~~~Lykk---~ginp~~gclp~liQ~Pif~alf~~l~ 129 (329)
T PRK01315 78 MKKIQEKYKGDRERMSQEMMKLYKE---TGTNPLSSCLPLLLQMPIFFALYRVLD 129 (329)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHH---cCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 4332333322222 22222221 38888777788764 47777776654
No 20
>PRK01001 putative inner membrane protein translocase component YidC; Provisional
Probab=71.58 E-value=99 Score=36.85 Aligned_cols=78 Identities=13% Similarity=0.140 Sum_probs=41.8
Q ss_pred HHHHHHHhhcccccH--HHHHHHHHHHhhhHHHHHHHHHhhcCHHH----HHHHHHHHHHHcCCCCCcCchHHHHHHHHH
Q 009285 127 LLTVIVKAATFPLTK--KQVESSMAMRSLAPQVKAIQERYAGDQER----IQLETARLYKLAGINPLAGCLPTLATIPVW 200 (538)
Q Consensus 127 llTllVRllllPL~i--kQ~ks~~KMq~LqPeI~kIqeKyk~D~qk----~qqEm~kLYKe~gvNPl~GCLP~LIQIPIF 200 (538)
.++|++=.+++-+.+ -++++++-|+.+| +||-+.+.=+++ .++..+++.+-|.= .||=|+---+|++
T Consensus 577 GlAIILlTIIVRLlLlPLtiKS~kSmaKMq----~LQPemqeIQeKYKdD~qK~QqEmMkLYKe---~GVNPl~GCLPmL 649 (795)
T PRK01001 577 GISIILLTVFLKLLLYPLNAWSIRSMRRMQ----KLSPYIQEIQQKYKKEPKRAQMEIMALYKT---NKVNPITGCLPLL 649 (795)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHH----HhhHHHHHHHHHhHhHHHHHHHHHHHHHHH---cCCCchHHHHHHH
Confidence 344444444444443 3566666665554 444444332333 33333444444432 3788888888988
Q ss_pred --HHHHHHHHhhh
Q 009285 201 --IGLYRALSNVA 211 (538)
Q Consensus 201 --IgLY~aLr~~a 211 (538)
|=+|.++-++.
T Consensus 650 IQmPIFfALY~vL 662 (795)
T PRK01001 650 IQLPFLIAMFDLL 662 (795)
T ss_pred HHHHHHHHHHHHH
Confidence 55777777654
No 21
>PF05280 FlhC: Flagellar transcriptional activator (FlhC); InterPro: IPR007944 This family consists of several bacterial flagellar transcriptional activator (FlhC) proteins. FlhC combines with FlhD to form a regulatory complex in Escherichia coli, this complex has been shown to be a global regulator involved in many cellular processes as well as a flagellar transcriptional activator [].; GO: 0003677 DNA binding, 0030092 regulation of flagellum assembly, 0045893 positive regulation of transcription, DNA-dependent; PDB: 2AVU_E.
Probab=56.73 E-value=19 Score=35.20 Aligned_cols=38 Identities=34% Similarity=0.584 Sum_probs=23.0
Q ss_pred HHHHHHHHHH-cCCCCCcCchHH----------HHHHHHHHHHHHHHHh
Q 009285 172 QLETARLYKL-AGINPLAGCLPT----------LATIPVWIGLYRALSN 209 (538)
Q Consensus 172 qqEm~kLYKe-~gvNPl~GCLP~----------LIQIPIFIgLY~aLr~ 209 (538)
..++.+|||| +|++|=+|.+|. -|+-=+|+.+|+.+..
T Consensus 37 ~~rl~~Lykel~G~sppkG~lP~S~~wf~t~~~~ihaSlf~~lY~~l~~ 85 (175)
T PF05280_consen 37 RERLRRLYKELHGVSPPKGMLPFSTDWFMTWQPNIHASLFMNLYRFLRK 85 (175)
T ss_dssp HHHHHHHHHHHCSS----S-----THHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCCCCCchhHHhcchHHHHHHHHHHHHHHHHh
Confidence 3457799999 899999999983 2677778888887764
No 22
>PF01956 DUF106: Integral membrane protein DUF106; InterPro: IPR002809 This entry represents a group of eukaryotic and archaeal proteins that have no known function. Members are predicted to be integral membrane proteins.; GO: 0016020 membrane
Probab=50.26 E-value=55 Score=31.01 Aligned_cols=63 Identities=10% Similarity=0.110 Sum_probs=28.0
Q ss_pred HHHHHHhhhHHHHHHHHHhhc-CHHH---HHHHHHHHHHHcCCCCCcC-chHHHHHHHHHHHHHHHHH
Q 009285 146 SSMAMRSLAPQVKAIQERYAG-DQER---IQLETARLYKLAGINPLAG-CLPTLATIPVWIGLYRALS 208 (538)
Q Consensus 146 s~~KMq~LqPeI~kIqeKyk~-D~qk---~qqEm~kLYKe~gvNPl~G-CLP~LIQIPIFIgLY~aLr 208 (538)
...++++++-+.+++++.... ..++ .+.++++..++.--+-+++ ..-+++++|+|..+++.+.
T Consensus 45 ~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~mK~~~~~~v~~i~i~~wi~~~f~ 112 (168)
T PF01956_consen 45 YQKRMKEFQKRYRELRKNGDFKKPKKLEKRQMELMEKQQEMMMMMMKPMFVTMVPQIPIFYWINYFFS 112 (168)
T ss_pred HHHHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Confidence 344555566666666653322 1223 3344444443331112222 2234455555555555554
No 23
>PRK02201 putative inner membrane protein translocase component YidC; Provisional
Probab=45.61 E-value=4.4e+02 Score=28.76 Aligned_cols=105 Identities=12% Similarity=0.194 Sum_probs=59.3
Q ss_pred HHHHHHHHHHhhhhccc----cCcchHHHHHHHHHHHHhhcccccH--HHHHHHHHHHhhhHHHHHHHHHhhcCHHHHH-
Q 009285 100 VMETVLKVLKDGMSTLH----VPYAYGFAIILLTVIVKAATFPLTK--KQVESSMAMRSLAPQVKAIQERYAGDQERIQ- 172 (538)
Q Consensus 100 ~me~vL~~L~~~L~~ih----~~~~WGlAIIllTllVRllllPL~i--kQ~ks~~KMq~LqPeI~kIqeKyk~D~qk~q- 172 (538)
+...+..++.+++..++ ++.++|++-++..+++=+++ -+.+ -..++++-++ +|++||-+.+.=+++..
T Consensus 104 f~~~~v~P~~~il~~i~~~~~~~~~~G~~w~laII~~Tiiv-RlillPl~~k~~~s~~----km~~lqPel~~Iq~Kyk~ 178 (357)
T PRK02201 104 FYGLFVYPIAQIILSIMASQSLSELYGWSTILAIIVVVLII-RLISFLITFKSTFNQE----KQEELQGKKAKIDAKYKD 178 (357)
T ss_pred HHHHHHHHHHHHHHHHHHhccccCcccHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH----HHHHhhHHHHHHHHHHhc
Confidence 44566777777777773 46778888766666555443 3333 3444444443 44556555443233321
Q ss_pred ---------HHHHHHHHHcCCCCCcCchHHHHHHHHH--HHHHHHHHhhhh
Q 009285 173 ---------LETARLYKLAGINPLAGCLPTLATIPVW--IGLYRALSNVAD 212 (538)
Q Consensus 173 ---------qEm~kLYKe~gvNPl~GCLP~LIQIPIF--IgLY~aLr~~a~ 212 (538)
+..+++.+-|. -.||=|+.--+|++ +=++.++.++..
T Consensus 179 ~~~d~~~~~k~q~e~~~Lyk---k~ginP~~gclP~LiQ~Pif~aly~vl~ 226 (357)
T PRK02201 179 YKKDKQMKQRKQQEIQELYK---KHNISPFSPFVQMFVTLPIFIAVYRVVQ 226 (357)
T ss_pred ccCCHHHHHHHHHHHHHHHH---HcCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 11223333332 24888888888988 457777777653
No 24
>COG1422 Predicted membrane protein [Function unknown]
Probab=43.59 E-value=3.4e+02 Score=27.45 Aligned_cols=63 Identities=17% Similarity=0.257 Sum_probs=41.5
Q ss_pred HHHHHhhhHHHHHHHH--------HhhcCHHHHHHHHHHHHHHcCCCCCcCchHHHHHHHHHHHHHHHHHhhhh
Q 009285 147 SMAMRSLAPQVKAIQE--------RYAGDQERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVAD 212 (538)
Q Consensus 147 ~~KMq~LqPeI~kIqe--------Kyk~D~qk~qqEm~kLYKe~gvNPl~GCLP~LIQIPIFIgLY~aLr~~a~ 212 (538)
...|++.|-+++|.++ |.+..++++.+-+.++.|.. ..||. .-.++.||+|.=+++-+.....
T Consensus 78 qk~m~efq~e~~eA~~~~d~~~lkkLq~~qmem~~~Q~elmk~q-fkPM~--~~~v~tI~~F~Wl~~~~~~~~~ 148 (201)
T COG1422 78 QKMMKEFQKEFREAQESGDMKKLKKLQEKQMEMMDDQRELMKMQ-FKPML--YISVLTIPFFAWLRWFVGTGGY 148 (201)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHh-hhhHH--HHHHHHHHHHHHHHHHHccCcc
Confidence 3456678888888875 34455666544444444432 33874 3456789999999999988754
No 25
>PF09973 DUF2208: Predicted membrane protein (DUF2208); InterPro: IPR009198 There are currently no experimental data for members of this group or their homologues. However, these proteins are predicted to contain three or more transmembrane segments.
Probab=41.11 E-value=1.3e+02 Score=30.83 Aligned_cols=85 Identities=16% Similarity=0.220 Sum_probs=44.4
Q ss_pred CcchHHHHHHHHHHHHhhcccccHHHHHH-HHHHHhh---hHHHH--HHHHHhhcCHHHHHHHHHHHHHHcCCCCCcCch
Q 009285 118 PYAYGFAIILLTVIVKAATFPLTKKQVES-SMAMRSL---APQVK--AIQERYAGDQERIQLETARLYKLAGINPLAGCL 191 (538)
Q Consensus 118 ~~~WGlAIIllTllVRllllPL~ikQ~ks-~~KMq~L---qPeI~--kIqeKyk~D~qk~qqEm~kLYKe~gvNPl~GCL 191 (538)
+..|+..+++-.+++=++++-.+.+++++ ...++++ +|-.+ +..|-...|+ ..++|+++.-|. .++
T Consensus 22 p~y~~~~filYfiv~~~i~~~~~~Rs~rr~~~~~~Ei~~g~~L~eEk~~~kl~~kD~-el~~E~~~~~k~-------~~~ 93 (233)
T PF09973_consen 22 PQYYFEVFILYFIVFFGIMIVMGIRSYRRGRKPRSEISKGRPLFEEKNANKLMEKDK-ELQKEYKKQMKA-------SMM 93 (233)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhhhhccCCcccHHHHhcCCcccccccHHHHHHhCH-HHHHHHHHHHHH-------HHH
Confidence 55676666666666656666666555551 1112222 11111 1111112243 456688888776 344
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 009285 192 PTLATIPVWIGLYRALSNVA 211 (538)
Q Consensus 192 P~LIQIPIFIgLY~aLr~~a 211 (538)
+++ -+||++.++..+....
T Consensus 94 ~ll-~~~i~ii~~~~~~~~v 112 (233)
T PF09973_consen 94 NLL-ILPIYIILFFLLYPYV 112 (233)
T ss_pred HHH-HHHHHHHHHHHHHHhh
Confidence 444 5888888777776543
No 26
>PF10852 DUF2651: Protein of unknown function (DUF2651) ; InterPro: IPR020258 This entry contains transmembrane proteins with no known function.
Probab=29.21 E-value=3.4e+02 Score=23.79 Aligned_cols=19 Identities=21% Similarity=0.604 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 009285 261 AYLVLPVLLVVSQYISVKI 279 (538)
Q Consensus 261 py~ILPIL~~~s~~ls~~i 279 (538)
..+++|+++.+...+...+
T Consensus 7 vlfi~Plli~i~sI~Gt~l 25 (82)
T PF10852_consen 7 VLFILPLLIIIISIIGTYL 25 (82)
T ss_pred HHHHhhHHHHHHHHHHhhh
Confidence 6789999988876665543
No 27
>PF09958 DUF2192: Uncharacterized protein conserved in archaea (DUF2192); InterPro: IPR018693 This family of various hypothetical archaeal proteins has no known function.
Probab=26.95 E-value=1.1e+02 Score=31.41 Aligned_cols=38 Identities=24% Similarity=0.295 Sum_probs=29.2
Q ss_pred HHHHHHHHhhcCHHHHHHHHHHHHHHcCCCCCcCchHH
Q 009285 156 QVKAIQERYAGDQERIQLETARLYKLAGINPLAGCLPT 193 (538)
Q Consensus 156 eI~kIqeKyk~D~qk~qqEm~kLYKe~gvNPl~GCLP~ 193 (538)
-+.++-++-.-|++++-..+++.|+++||.|+.|.-|.
T Consensus 16 l~~~il~~~~~~R~~lv~~L~~~Y~~~gIeP~RG~s~~ 53 (231)
T PF09958_consen 16 LWSRILRGEVLDREELVELLREVYEENGIEPFRGLSPP 53 (231)
T ss_pred HHHHHHHhccCCHHHHHHHHHHHHHHcCCCcCCCCCcc
Confidence 33444444344788888999999999999999998764
No 28
>TIGR00828 EIID-AGA PTS system, mannose/fructose/sorbose family, IID component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Man family is unique in several respects among PTS permease families.It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine,N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IID subunits of this family of PTS transporters.
Probab=25.84 E-value=1.7e+02 Score=30.54 Aligned_cols=31 Identities=19% Similarity=0.217 Sum_probs=20.3
Q ss_pred HHHHHhhcCHHHHHHHHHHHHHHcCCCCCcC
Q 009285 159 AIQERYAGDQERIQLETARLYKLAGINPLAG 189 (538)
Q Consensus 159 kIqeKyk~D~qk~qqEm~kLYKe~gvNPl~G 189 (538)
.|++-|++|++++++.+++=..=+|.+|..|
T Consensus 39 ~L~KlY~~d~e~~~~Alkrhl~fFNT~p~~~ 69 (271)
T TIGR00828 39 AIKKLYPDDKAGRSAALKRHLEFFNTHPNLV 69 (271)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHCCCchhh
Confidence 4455688887777666655444578888754
No 29
>TIGR03593 yidC_nterm membrane protein insertase, YidC/Oxa1 family, N-terminal domain. Essentially all bacteria have a member of the YidC family, whose C-terminal domain is modeled by TIGR03592. The two copies are found in endospore-forming bacteria such as Bacillus subtilis appear redundant during vegetative growth, although the member designated spoIIIJ (stage III sporulation protein J) has a distinct role in spore formation. YidC, its mitochondrial homolog Oxa1, and its chloroplast homolog direct insertion into the bacterial/organellar inner (or only) membrane. This model describes an N-terminal sequence region, including a large periplasmic domain lacking in YidC members from Gram-positive species. The multifunctional YidC protein acts both with and independently of the Sec system.
Probab=24.79 E-value=76 Score=33.61 Aligned_cols=22 Identities=18% Similarity=0.217 Sum_probs=19.0
Q ss_pred ccchhhhHHHHHHHHHHHHHhh
Q 009285 90 NSDWLSGITNVMETVLKVLKDG 111 (538)
Q Consensus 90 ~~~w~~~i~~~me~vL~~L~~~ 111 (538)
+-|||.+|+.||-++|+++|.+
T Consensus 343 DyGw~~~iakPlf~lL~~~~~~ 364 (366)
T TIGR03593 343 DYGWLWFIAKPLFWLLDFFHSL 364 (366)
T ss_pred eeecHHHHHHHHHHHHHHHHHh
Confidence 5679999999999999998874
No 30
>PRK09855 PTS system N-acetylgalactosamine-specific transporter subunit IID; Provisional
Probab=24.47 E-value=1.8e+02 Score=30.28 Aligned_cols=32 Identities=9% Similarity=0.143 Sum_probs=22.8
Q ss_pred HHHHHhhcCHHHHHHHHHHHHHHcCCCCCcCc
Q 009285 159 AIQERYAGDQERIQLETARLYKLAGINPLAGC 190 (538)
Q Consensus 159 kIqeKyk~D~qk~qqEm~kLYKe~gvNPl~GC 190 (538)
.|++-|++|+|++++.+++=..=+|++|..|.
T Consensus 41 ~L~KlY~~~~e~~~~Al~rHl~ffNT~p~~~~ 72 (263)
T PRK09855 41 ILKKIYKDDKPGLSAAMKDNLEFINTHPNLVG 72 (263)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHCCCchhhh
Confidence 34556888888877777766666899997654
No 31
>KOG3817 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.13 E-value=2.6e+02 Score=30.84 Aligned_cols=68 Identities=16% Similarity=0.220 Sum_probs=38.7
Q ss_pred hHHHHHHHHHHHHhhcccccHHHHHHHHHHHhhhHHHHHH--HHHhhc--CHH--HHHHHHHHHHHHcCCCCCc
Q 009285 121 YGFAIILLTVIVKAATFPLTKKQVESSMAMRSLAPQVKAI--QERYAG--DQE--RIQLETARLYKLAGINPLA 188 (538)
Q Consensus 121 WGlAIIllTllVRllllPL~ikQ~ks~~KMq~LqPeI~kI--qeKyk~--D~q--k~qqEm~kLYKe~gvNPl~ 188 (538)
...|+|+..++...+-+|+.+..+-.-+--+..+|--.++ +|.|.. +.+ +.-.|+++.-++-++.|++
T Consensus 277 ~a~A~iI~~lc~~~l~~pIrw~~~~~~kv~r~fkpl~rRlLtEeEYeeQaeveT~kaLaeLReycnkpd~~~Wk 350 (452)
T KOG3817|consen 277 AAIAAIIMVLCFVALYFPIRWTNQIKFKVRRRFKPLKRRLLTEEEYEEQAEVETSKALAELREYCNKPDCKQWK 350 (452)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhhcCHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhh
Confidence 3457788888888999999986543321112233322222 344532 221 2334667777777877765
No 32
>KOG4819 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.83 E-value=1.8e+02 Score=26.27 Aligned_cols=31 Identities=19% Similarity=0.324 Sum_probs=24.7
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 009285 382 PRPGEKFKQIREQEARRRQQREEEKRKAAEA 412 (538)
Q Consensus 382 ~~pg~~~~~~~~~~~~~~~~~~~~~~k~~~a 412 (538)
-.|..+..+++|.++.+++++|+.+.+-+|+
T Consensus 33 qk~~~~~~~~qeK~a~k~~Ere~~r~~R~e~ 63 (106)
T KOG4819|consen 33 NKPEIRNMKRQEKAAQKAAEREKVRADRDEQ 63 (106)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 3678889999999999999988866655555
Done!