Query 009285
Match_columns 538
No_of_seqs 291 out of 1274
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 23:02:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009285.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009285hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v54_D Cytochrome C oxidase su 12.8 85 0.0029 28.8 2.0 31 151-181 31-62 (147)
2 1e91_A Paired amphipathic heli 12.4 2.2E+02 0.0074 23.4 4.2 31 156-186 13-45 (85)
3 2cr7_A Paired amphipathic heli 11.4 2.2E+02 0.0074 23.1 3.8 30 156-185 16-47 (80)
4 4fz4_A 0197-18KD, uncharacteri 10.4 3.2E+02 0.011 25.2 5.0 33 145-182 77-109 (154)
5 2y69_D Cytochrome C oxidase su 9.8 1.2E+02 0.0041 28.4 2.0 30 152-181 54-84 (169)
6 2czy_A Paired amphipathic heli 9.6 2.9E+02 0.0099 22.1 4.0 30 156-185 10-41 (77)
7 1g1e_B SIN3A; four-helix bundl 8.7 3E+02 0.01 22.7 3.7 28 156-183 16-45 (89)
8 1z65_A PRPLP, prion-like prote 8.4 2.3E+02 0.008 19.3 2.4 16 119-134 6-21 (30)
9 4ea3_A Fusion protein of nocic 8.1 1E+03 0.035 23.3 8.2 16 262-277 297-312 (434)
10 2f05_A Paired amphipathic heli 7.7 3E+02 0.01 23.6 3.4 31 156-186 13-45 (105)
No 1
>1v54_D Cytochrome C oxidase subunit IV isoform 1; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.1.1 PDB: 1oco_D* 1occ_D* 1ocz_D* 1ocr_D* 1v55_D* 2dyr_D* 2dys_D* 2eij_D* 2eik_D* 2eil_D* 2eim_D* 2ein_D* 2occ_D* 2ybb_O* 2zxw_D* 3abk_D* 3abl_D* 3abm_D* 3ag1_D* 3ag2_D* ...
Probab=12.76 E-value=85 Score=28.78 Aligned_cols=31 Identities=26% Similarity=0.417 Sum_probs=23.9
Q ss_pred HhhhHHHHHHHHHhhcCHHHH-HHHHHHHHHH
Q 009285 151 RSLAPQVKAIQERYAGDQERI-QLETARLYKL 181 (538)
Q Consensus 151 q~LqPeI~kIqeKyk~D~qk~-qqEm~kLYKe 181 (538)
+.|.|++.+|++|.++|=.++ .+|..+||+-
T Consensus 31 ~~lt~~i~aLreKeKgdWk~LT~eEKkAlYri 62 (147)
T 1v54_D 31 KNLSASQKALKEKEKASWSSLSIDEKVELYRL 62 (147)
T ss_dssp CCCCHHHHHHHHHTTSCGGGSCHHHHHHHHHH
T ss_pred ccCcHHHHHHHHHhcCCHHHcCHHHHHHHHHH
Confidence 346899999999999986554 5677778764
No 2
>1e91_A Paired amphipathic helix protein SIN3B; eukaryotic transcriptional regulation, SIN3, PAH domains, protein-protein interactions; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1pd7_A
Probab=12.38 E-value=2.2e+02 Score=23.36 Aligned_cols=31 Identities=23% Similarity=0.365 Sum_probs=25.0
Q ss_pred HHHHHHHHhhcCHHHHH--HHHHHHHHHcCCCC
Q 009285 156 QVKAIQERYAGDQERIQ--LETARLYKLAGINP 186 (538)
Q Consensus 156 eI~kIqeKyk~D~qk~q--qEm~kLYKe~gvNP 186 (538)
-++++++++.++++..+ .++++-|++..++-
T Consensus 13 yv~kVK~rF~~~p~~Y~~FL~il~~yk~~~~d~ 45 (85)
T 1e91_A 13 YVNKIKTRFLDHPEIYRSFLEILHTYQKEQLHT 45 (85)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHHHHHccccc
Confidence 56889999999988654 47889999988763
No 3
>2cr7_A Paired amphipathic helix protein SIN3B; paired amphipathic helix repeat, transcriptional repressor, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rmr_A 2rms_A
Probab=11.37 E-value=2.2e+02 Score=23.08 Aligned_cols=30 Identities=20% Similarity=0.402 Sum_probs=22.8
Q ss_pred HHHHHHHHhhcCHHHHH--HHHHHHHHHcCCC
Q 009285 156 QVKAIQERYAGDQERIQ--LETARLYKLAGIN 185 (538)
Q Consensus 156 eI~kIqeKyk~D~qk~q--qEm~kLYKe~gvN 185 (538)
-++++++++.++++... .++|+-||...++
T Consensus 16 yl~~VK~rF~~~p~~Y~~FL~im~~fk~~~~~ 47 (80)
T 2cr7_A 16 YLDQVKIRFGSDPATYNGFLEIMKEFKSQSID 47 (80)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHccChHHHHHHHHHHHHHHhcCCC
Confidence 46788999998887654 3788888887654
No 4
>4fz4_A 0197-18KD, uncharacterized protein conserved in bacteria; surface antigen, immune system; 2.44A {Streptococcus suis}
Probab=10.42 E-value=3.2e+02 Score=25.15 Aligned_cols=33 Identities=18% Similarity=0.408 Sum_probs=27.2
Q ss_pred HHHHHHHhhhHHHHHHHHHhhcCHHHHHHHHHHHHHHc
Q 009285 145 ESSMAMRSLAPQVKAIQERYAGDQERIQLETARLYKLA 182 (538)
Q Consensus 145 ks~~KMq~LqPeI~kIqeKyk~D~qk~qqEm~kLYKe~ 182 (538)
...++|..+--++...++||.+|. ++.++|+.|
T Consensus 77 g~h~k~E~~tRqVa~YrkKYp~n~-----eIe~eyk~~ 109 (154)
T 4fz4_A 77 KYQIKVENYIRQVAELRKKYPGDN-----TIEEEYNAH 109 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCSCH-----HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCch-----HHHHHHHHH
Confidence 445788888889999999999985 588889876
No 5
>2y69_D Cytochrome C oxidase subunit 4 isoform 1; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=9.80 E-value=1.2e+02 Score=28.39 Aligned_cols=30 Identities=27% Similarity=0.401 Sum_probs=23.3
Q ss_pred hhhHHHHHHHHHhhcCHHHH-HHHHHHHHHH
Q 009285 152 SLAPQVKAIQERYAGDQERI-QLETARLYKL 181 (538)
Q Consensus 152 ~LqPeI~kIqeKyk~D~qk~-qqEm~kLYKe 181 (538)
.+.|++.+|++|.|+|=.++ .+|..+||+-
T Consensus 54 ~~t~~i~aLreKEKgdWk~LT~eEKKAlYri 84 (169)
T 2y69_D 54 NLSASQKALKEKEKASWSSLSIDEKVELYRL 84 (169)
T ss_dssp CCCHHHHHHHHHTTSCGGGSCHHHHHHHHHH
T ss_pred cCcHHHHHHHHHhcCCHHHcCHHHHHHHHHH
Confidence 46899999999999986554 5667777764
No 6
>2czy_A Paired amphipathic helix protein SIN3B; SIN3, PAH1, transcriptional repressor, gene regulation; NMR {Mus musculus}
Probab=9.64 E-value=2.9e+02 Score=22.10 Aligned_cols=30 Identities=20% Similarity=0.402 Sum_probs=22.8
Q ss_pred HHHHHHHHhhcCHHHHH--HHHHHHHHHcCCC
Q 009285 156 QVKAIQERYAGDQERIQ--LETARLYKLAGIN 185 (538)
Q Consensus 156 eI~kIqeKyk~D~qk~q--qEm~kLYKe~gvN 185 (538)
-++++++++.++++... .++|+-||...++
T Consensus 10 yl~~VK~~F~~~p~~Y~~FL~im~~~k~~~~~ 41 (77)
T 2czy_A 10 YLDQVKIRFGSDPATYNGFLEIMKEFKSQSID 41 (77)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHccChHHHHHHHHHHHHHHHcCCC
Confidence 56788999999887654 3778888886654
No 7
>1g1e_B SIN3A; four-helix bundle, protein-peptide complex, transcription; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1s5q_B 1s5r_B 2l9s_B
Probab=8.65 E-value=3e+02 Score=22.74 Aligned_cols=28 Identities=25% Similarity=0.451 Sum_probs=20.9
Q ss_pred HHHHHHHHhhcCHHHHH--HHHHHHHHHcC
Q 009285 156 QVKAIQERYAGDQERIQ--LETARLYKLAG 183 (538)
Q Consensus 156 eI~kIqeKyk~D~qk~q--qEm~kLYKe~g 183 (538)
-+++|+++|.++++... .++++-|++..
T Consensus 16 YvnkVK~rF~~~p~~Y~~FL~IL~~y~~~~ 45 (89)
T 1g1e_B 16 YVNKIKNRFQGQPDIYKAFLEILHTYQKEQ 45 (89)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccChHHHHHHHHHHHHHHhcc
Confidence 56889999999988654 36777787653
No 8
>1z65_A PRPLP, prion-like protein doppel, doppelganger; transmembrane helix, DHPC, mouse doppel, unknown function; NMR {Synthetic}
Probab=8.39 E-value=2.3e+02 Score=19.33 Aligned_cols=16 Identities=13% Similarity=0.114 Sum_probs=11.5
Q ss_pred cchHHHHHHHHHHHHh
Q 009285 119 YAYGFAIILLTVIVKA 134 (538)
Q Consensus 119 ~~WGlAIIllTllVRl 134 (538)
+.||++|++..+.--+
T Consensus 6 G~~wlai~c~LLfs~L 21 (30)
T 1z65_A 6 GTWWVAILCMLLASHL 21 (30)
T ss_dssp SSHHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHHHhhH
Confidence 4688998887766544
No 9
>4ea3_A Fusion protein of nociceptin receptor and cytochr; PSI-biology GPCR network, structural genomics, GPCR membrane 7TM NOP ORL1 cytochrome B562; HET: 0NN OLB OLA OLC; 3.01A {Homo sapiens}
Probab=8.10 E-value=1e+03 Score=23.32 Aligned_cols=16 Identities=25% Similarity=0.542 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 009285 262 YLVLPVLLVVSQYISV 277 (538)
Q Consensus 262 y~ILPIL~~~s~~ls~ 277 (538)
.+++|+++.+..|..+
T Consensus 297 ~~~ip~~ii~~~y~~I 312 (434)
T 4ea3_A 297 SFIVPVLVISVCYSLM 312 (434)
T ss_dssp HTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4567777766655543
No 10
>2f05_A Paired amphipathic helix protein SIN3B; helix bundle, transcription repressor; NMR {Mus musculus} SCOP: a.59.1.1
Probab=7.66 E-value=3e+02 Score=23.55 Aligned_cols=31 Identities=23% Similarity=0.365 Sum_probs=25.1
Q ss_pred HHHHHHHHhhcCHHHHH--HHHHHHHHHcCCCC
Q 009285 156 QVKAIQERYAGDQERIQ--LETARLYKLAGINP 186 (538)
Q Consensus 156 eI~kIqeKyk~D~qk~q--qEm~kLYKe~gvNP 186 (538)
-+++|+.+|.++++..+ .++++-|++..++.
T Consensus 13 YvnkVK~rF~d~p~vY~~FL~IL~~yk~~~~d~ 45 (105)
T 2f05_A 13 YVNKIKTRFLDHPEIYRSFLEILHTYQKEQLHT 45 (105)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHccChHHHHHHHHHHHHHHhccccc
Confidence 56899999999988654 47889999988764
Done!