Query 009285
Match_columns 538
No_of_seqs 291 out of 1274
Neff 4.8
Searched_HMMs 13730
Date Mon Mar 25 23:03:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009285.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/009285hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2avue1 e.64.1.1 (E:5-160) Fla 27.0 34 0.0025 29.5 4.9 37 173-209 34-81 (156)
2 d1v54d_ f.23.1.1 (D:) Mitochon 11.6 39 0.0028 28.8 1.5 31 151-181 28-59 (144)
3 d3dtub2 f.17.2.1 (B:30-129) Ba 10.9 2.5E+02 0.018 21.2 6.2 24 294-318 72-95 (100)
4 d3ehbb2 f.17.2.1 (B:1-107) Bac 9.5 3.3E+02 0.024 20.9 6.6 25 294-319 78-102 (107)
5 d1v54b2 f.17.2.1 (B:1-90) Mito 8.9 2.8E+02 0.021 20.7 5.8 24 295-319 63-86 (90)
6 d1lvaa3 a.4.5.35 (A:511-574) C 7.2 1E+02 0.0076 21.9 2.2 22 166-187 3-24 (64)
7 d2f05a1 a.59.1.1 (A:1-85) Sin3 6.2 2.4E+02 0.018 20.8 4.0 32 156-187 13-46 (85)
8 d2axtk1 f.23.36.1 (K:10-46) Ph 5.9 1.1E+02 0.0081 20.1 1.4 17 299-315 18-34 (37)
9 d1v54m_ f.23.7.1 (M:) Mitochon 5.6 2.3E+02 0.016 19.2 3.1 18 304-325 21-38 (43)
10 d2e50a1 d.305.1.1 (A:1-222) Pr 5.1 3.6E+02 0.026 23.4 5.1 26 142-167 27-52 (222)
No 1
>d2avue1 e.64.1.1 (E:5-160) Flagellar transcriptional activator FlhC {Escherichia coli [TaxId: 562]}
Probab=26.97 E-value=34 Score=29.47 Aligned_cols=37 Identities=24% Similarity=0.362 Sum_probs=29.4
Q ss_pred HHHHHHHHH-cCCCCCcCchH----------HHHHHHHHHHHHHHHHh
Q 009285 173 LETARLYKL-AGINPLAGCLP----------TLATIPVWIGLYRALSN 209 (538)
Q Consensus 173 qEm~kLYKe-~gvNPl~GCLP----------~LIQIPIFIgLY~aLr~ 209 (538)
.++.+|||| +|..|=+|.+| .-|+-=+|+.+|+-+..
T Consensus 34 ~~l~rLykE~~g~sppkG~lP~S~dWf~t~~~nihsSlf~~iY~~l~~ 81 (156)
T d2avue1 34 GRLIKLYKELRGSPPPKGMLPFSTDWFMTWEQNVHASMFCNAWQFLLK 81 (156)
T ss_dssp HHHHHHHHHHSSSCCCCSCCCCCTHHHHSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCCcCCCcchhhcccchhhHHHHHHHHHHHHHh
Confidence 457899998 89999999888 33677788888877764
No 2
>d1v54d_ f.23.1.1 (D:) Mitochondrial cytochrome c oxidase subunit IV {Cow (Bos taurus) [TaxId: 9913]}
Probab=11.56 E-value=39 Score=28.79 Aligned_cols=31 Identities=26% Similarity=0.417 Sum_probs=24.7
Q ss_pred HhhhHHHHHHHHHhhcCHHHH-HHHHHHHHHH
Q 009285 151 RSLAPQVKAIQERYAGDQERI-QLETARLYKL 181 (538)
Q Consensus 151 q~LqPeI~kIqeKyk~D~qk~-qqEm~kLYKe 181 (538)
+++-|++.+|++|.++|=.++ .+|..+||+-
T Consensus 28 ~e~t~ei~aLreKeKgdWk~LS~eEKkalYri 59 (144)
T d1v54d_ 28 KNLSASQKALKEKEKASWSSLSIDEKVELYRL 59 (144)
T ss_dssp CCCCHHHHHHHHHTTSCGGGSCHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHhhCChhhcCHHHHHHHHHH
Confidence 578899999999999986554 5677788864
No 3
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=10.87 E-value=2.5e+02 Score=21.25 Aligned_cols=24 Identities=21% Similarity=0.295 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhHhHHH
Q 009285 294 QALTNFLPLMIGYFALSVPSGLSLY 318 (538)
Q Consensus 294 k~mm~~MPlmi~~f~~~~PaGL~LY 318 (538)
-.+-.+.|+++ .+++.+|+.=.+|
T Consensus 72 EiiWTviP~lI-Li~l~~pS~~~ly 95 (100)
T d3dtub2 72 EIAWTIVPIVI-LVAIGAFSLPVLF 95 (100)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 34455788776 4455678877776
No 4
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=9.49 E-value=3.3e+02 Score=20.88 Aligned_cols=25 Identities=20% Similarity=0.332 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhHhHHHH
Q 009285 294 QALTNFLPLMIGYFALSVPSGLSLYW 319 (538)
Q Consensus 294 k~mm~~MPlmi~~f~~~~PaGL~LYW 319 (538)
-..-.+.|+++ .+...+|+--.||-
T Consensus 78 Ei~WTviP~lI-L~~laipSl~~Ly~ 102 (107)
T d3ehbb2 78 EVIWTLVPVLI-LVAIGAFSLPILFR 102 (107)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 34445788776 44455888777774
No 5
>d1v54b2 f.17.2.1 (B:1-90) Mitochondrial cytochrome c oxidase, subunit II {Cow (Bos taurus) [TaxId: 9913]}
Probab=8.91 E-value=2.8e+02 Score=20.73 Aligned_cols=24 Identities=29% Similarity=0.416 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHhhhhhHhHHHH
Q 009285 295 ALTNFLPLMIGYFALSVPSGLSLYW 319 (538)
Q Consensus 295 ~mm~~MPlmi~~f~~~~PaGL~LYW 319 (538)
.+=.+.|.+++. +..+||=-.||.
T Consensus 63 iiWTiiP~lILi-~ia~PSl~lLY~ 86 (90)
T d1v54b2 63 TIWTILPAIILI-LIALPSLRILYM 86 (90)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 344578888754 445899988885
No 6
>d1lvaa3 a.4.5.35 (A:511-574) C-terminal fragment of elongation factor SelB {Moorella thermoacetica [TaxId: 1525]}
Probab=7.16 E-value=1e+02 Score=21.92 Aligned_cols=22 Identities=14% Similarity=0.312 Sum_probs=18.3
Q ss_pred cCHHHHHHHHHHHHHHcCCCCC
Q 009285 166 GDQERIQLETARLYKLAGINPL 187 (538)
Q Consensus 166 ~D~qk~qqEm~kLYKe~gvNPl 187 (538)
.|++++.+.+..+|++.|+.|-
T Consensus 3 ~~q~~l~~~I~~~~~~~g~~PP 24 (64)
T d1lvaa3 3 ETQKKLLKDLEDKYRVSRWQPP 24 (64)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHcCCCCC
Confidence 4567788889999999999984
No 7
>d2f05a1 a.59.1.1 (A:1-85) Sin3B {Mouse (Mus musculus) [TaxId: 10090]}
Probab=6.15 E-value=2.4e+02 Score=20.85 Aligned_cols=32 Identities=19% Similarity=0.268 Sum_probs=24.4
Q ss_pred HHHHHHHHhhcCHHHHHH--HHHHHHHHcCCCCC
Q 009285 156 QVKAIQERYAGDQERIQL--ETARLYKLAGINPL 187 (538)
Q Consensus 156 eI~kIqeKyk~D~qk~qq--Em~kLYKe~gvNPl 187 (538)
-++++++++.++++..++ +++..|+++-++..
T Consensus 13 yl~kVK~rf~~~p~~Y~~FL~il~~f~~~~i~~~ 46 (85)
T d2f05a1 13 YVNKIKTRFLDHPEIYRSFLEILHTYQKEQLHTK 46 (85)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSSSS
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhhcccc
Confidence 467899999988876544 67888888877643
No 8
>d2axtk1 f.23.36.1 (K:10-46) Photosystem II reaction center protein K, PsbK {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=5.86 E-value=1.1e+02 Score=20.13 Aligned_cols=17 Identities=12% Similarity=0.305 Sum_probs=7.6
Q ss_pred HHHHHHHHHHhhhhhHh
Q 009285 299 FLPLMIGYFALSVPSGL 315 (538)
Q Consensus 299 ~MPlmi~~f~~~~PaGL 315 (538)
+.|++++.+++-+-+++
T Consensus 18 iIPv~f~lLafVWQAaV 34 (37)
T d2axtk1 18 VIPVLFLALAFVWQAAV 34 (37)
T ss_dssp GHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHh
Confidence 34444444444444443
No 9
>d1v54m_ f.23.7.1 (M:) Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) {Cow (Bos taurus) [TaxId: 9913]}
Probab=5.63 E-value=2.3e+02 Score=19.24 Aligned_cols=18 Identities=22% Similarity=0.741 Sum_probs=11.9
Q ss_pred HHHHHhhhhhHhHHHHHhhhHH
Q 009285 304 IGYFALSVPSGLSLYWFTNNLL 325 (538)
Q Consensus 304 i~~f~~~~PaGL~LYWitSNlf 325 (538)
++++++..|+| |+.|++=
T Consensus 21 ~~f~~~L~PaG----wVLshLe 38 (43)
T d1v54m_ 21 VTFLSFLLPAG----WVLYHLD 38 (43)
T ss_dssp HHHHHHHHHHH----HHHHTHH
T ss_pred HHHHHHHccHH----HHHHHHH
Confidence 34556667999 7777653
No 10
>d2e50a1 d.305.1.1 (A:1-222) Protein SET {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.06 E-value=3.6e+02 Score=23.35 Aligned_cols=26 Identities=12% Similarity=0.254 Sum_probs=18.6
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHhhcC
Q 009285 142 KQVESSMAMRSLAPQVKAIQERYAGD 167 (538)
Q Consensus 142 kQ~ks~~KMq~LqPeI~kIqeKyk~D 167 (538)
.+.+....++.+|-++.++.+++...
T Consensus 27 ~~~~~i~~L~~iQ~e~~~l~~e~~~e 52 (222)
T d2e50a1 27 EQQEAIEHIDEVQNEIDRLNEQASEE 52 (222)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677788888888888776554
Done!