BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009286
(538 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VTE|A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase
From Cannabis Sativa
Length = 518
Score = 457 bits (1176), Expect = e-129, Method: Compositional matrix adjust.
Identities = 244/511 (47%), Positives = 336/511 (65%), Gaps = 19/511 (3%)
Query: 31 EKFLQCLSVHSERTFIS-KVTYTQXXXXXXXXXXXXKQNLLYKPPEYGRPQVIVTPFDVS 89
E FL+C S H + K+ YTQ QNL + +P VIVTP + S
Sbjct: 5 ENFLKCFSKHIPNNVANPKLVYTQHDQLYMSILNSTIQNLRFISDTTPKPLVIVTPSNNS 64
Query: 90 QIQAVLKCAQKHDLLVKVRSGGHDHEGLSYLSEVPFVMIDMINFSQIDVDAEAKSAWVGA 149
IQA + C++K L ++ RSGGHD EG+SY+S+VPFV++D+ N I +D +++AWV A
Sbjct: 65 HIQATILCSKKVGLQIRTRSGGHDAEGMSYISQVPFVVVDLRNMHSIKIDVHSQTAWVEA 124
Query: 150 GATLGELYYKISEKSKNLAFPAGICPTVAVGGHLSGGGFGYIMRKYGLGADQVIDAHLVD 209
GATLGE+YY I+EK++NL+FP G CPTV VGGH SGGG+G +MR YGL AD +IDAHLV+
Sbjct: 125 GATLGEVYYWINEKNENLSFPGGYCPTVGVGGHFSGGGYGALMRNYGLAADNIIDAHLVN 184
Query: 210 VNGRILDRKSMGEDLFWAIRGGGAASFGVLVAWKVNLVDVPSIVTVFTVQKTLE-QNASQ 268
V+G++LDRKSMGEDLFWAIRGGG +FG++ AWK+ LV VPS T+F+V+K +E +
Sbjct: 185 VDGKVLDRKSMGEDLFWAIRGGGGENFGIIAAWKIKLVAVPSKSTIFSVKKNMEIHGLVK 244
Query: 269 IHHKWQQIAYDLPKELVISAGLQSQ-------KGKRALVATFSAVYLGGVDRLLPLMQER 321
+ +KWQ IAY K+LV+ ++ K K + FS+++ GGVD L+ LM +
Sbjct: 245 LFNKWQNIAYKYDKDLVLMTHFITKNITDNHGKNKTTVHGYFSSIFHGGVDSLVDLMNKS 304
Query: 322 FPELGLVKEDCQEMSWVESTVYHFAFEIRASKNL--ELLLDRVNYTKYYLKAKSDYVREP 379
FPELG+ K DC+E SW+++T+++ + N E+LLDR K K DYV++P
Sbjct: 305 FPELGIKKTDCKEFSWIDTTIFYSGVVNFNTANFKKEILLDRSAGKKTAFSIKLDYVKKP 364
Query: 380 IPVEVLEGMYEILYEEG-GHNIYVISFPYGGRLNEIPETEIAFPHRTN-KFHMMYFAAWS 437
IP + + E LYEE G +YV+ +PYGG + EI E+ I FPHR + + Y A+W
Sbjct: 365 IPETAMVKILEKLYEEDVGAGMYVL-YPYGGIMEEISESAIPFPHRAGIMYELWYTASWE 423
Query: 438 DGEESQKVLELDRKLYEYMTPYVTKNPRATYFNCKDIEIGRNNYG--NNYTSVKEASIWG 495
E+++K + R +Y + TPYV++NPR Y N +D+++G+ N+ NNYT +A IWG
Sbjct: 424 KQEDNEKHINWVRSVYNFTTPYVSQNPRLAYLNYRDLDLGKTNHASPNNYT---QARIWG 480
Query: 496 KKYFKNNFYRLVDVKTKVDPGNFFRNEQSIP 526
+KYF NF RLV VKTKVDP NFFRNEQSIP
Sbjct: 481 EKYFGKNFNRLVKVKTKVDPNNFFRNEQSIP 511
>pdb|3TSH|A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With
Glucose Dehydrogenase Activity
pdb|3TSJ|A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With
Glucose Dehydrogenase Activity
pdb|3TSJ|B Chain B, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With
Glucose Dehydrogenase Activity
Length = 500
Score = 394 bits (1013), Expect = e-110, Method: Compositional matrix adjust.
Identities = 214/503 (42%), Positives = 298/503 (59%), Gaps = 18/503 (3%)
Query: 31 EKFLQCLSVHSERTFISKVTYTQXXXXXXXXXXXXKQNLLYKPPEYGRPQVIVTPFDVSQ 90
E FL CL + ++ Y + +N + P+ +P I+TP VS
Sbjct: 9 EDFLGCLV----KEIPPRLLYAKSSPAYPSVLGQTIRNSRWSSPDNVKPLYIITPTQVSH 64
Query: 91 IQAVLKCAQKHDLLVKVRSGGHDHEGLSYLSEVP--FVMIDMINFSQIDVDAEAKSAWVG 148
IQ+ + C ++H + ++VRSGGHD+EGLSY S P F ++D+ + VD +A++AWV
Sbjct: 65 IQSAVVCGRRHSVRIRVRSGGHDYEGLSYRSLQPETFAVVDLNKMRAVWVDGKARTAWVD 124
Query: 149 AGATLGELYYKISEKSKNLAFPAGICPTVAVGGHLSGGGFGYIMRKYGLGADQVIDAHLV 208
+GA LGELYY I + S LAFPAG+CPT+ VGG+ +GGGFG ++RKYG+ A+ VID LV
Sbjct: 125 SGAQLGELYYAIYKASPTLAFPAGVCPTIGVGGNFAGGGFGMLLRKYGIAAENVIDVKLV 184
Query: 209 DVNGRILDRKSMGEDLFWAIRGGGAASFGVLVAWKVNLVDVPSIVTVFTVQKTLEQNASQ 268
D NG++ D+KSMG+D FWA+RGGG SFG++VAW+V L+ VP VT+F + KT+ + A
Sbjct: 185 DANGKLHDKKSMGDDHFWAVRGGGGESFGIVVAWQVKLLPVPPTVTIFKISKTVSEGAVD 244
Query: 269 IHHKWQQIAYDLPKELVISAGLQSQKGKRALVATFSAVYLGGVDRLLPLMQERFPELGLV 328
I +KWQ +A LP +L+I Q K ATF A+YLG L PLM +FPELG+
Sbjct: 245 IINKWQVVAPQLPADLMIRIIAQGPK------ATFEAMYLGTCKTLTPLMSSKFPELGMN 298
Query: 329 KEDCQEMSWVESTVY-HFAFEIRASKNLELLLDRVNYTKYYLKAKSDYVREPIPVEVLEG 387
C EMSW++S + H + LL+R N K + + KSDYV +P P V E
Sbjct: 299 PSHCNEMSWIQSIPFVHLGHRDALEDD---LLNRQNSFKPFAEYKSDYVYQPFPKTVWEQ 355
Query: 388 MYEILYEEGGHNIYVISFPYGGRLNEIPETEIAFPHRTNK-FHMMYFAAWSDGEESQKVL 446
+ + G I + PYG ++ PE+ FPHR F++ Y W + L
Sbjct: 356 ILNTWLVKPGAGIMIFD-PYGATISATPESATPFPHRKGVLFNIQYVNYWFAPGAAAAPL 414
Query: 447 ELDRKLYEYMTPYVTKNPRATYFNCKDIEIGRNNYGNNYTSVKEASIWGKKYFKNNFYRL 506
+ +Y YM PYV+KNPR Y N +DI++GRN N+ ++ +WG+KYFK NF RL
Sbjct: 415 SWSKDIYNYMEPYVSKNPRQAYANYRDIDLGRNEVVNDVSTYASGKVWGQKYFKGNFERL 474
Query: 507 VDVKTKVDPGNFFRNEQSIPSRI 529
K KVDP ++FRNEQSIP I
Sbjct: 475 AITKGKVDPTDYFRNEQSIPPLI 497
>pdb|4DNS|A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60
Provides Insight Into The Various Cross-Allergenicity Of
The Pollen Group 4 Allergens
pdb|4DNS|B Chain B, Crystal Structure Of Bermuda Grass Isoallergen Bg60
Provides Insight Into The Various Cross-Allergenicity Of
The Pollen Group 4 Allergens
Length = 497
Score = 386 bits (991), Expect = e-107, Method: Compositional matrix adjust.
Identities = 211/504 (41%), Positives = 296/504 (58%), Gaps = 18/504 (3%)
Query: 26 AHDTNEKFLQCLSVHSERTFISKVTYTQXXXXXXXXXXXXKQNLLYKPPEYGRPQVIVTP 85
A FL CL+ + + Y + +N+ + + +P I+TP
Sbjct: 6 AKQVERDFLTCLT----KDIPPRQLYAKSSPAYASVWSSTVRNIKFLSDKTVKPLYIITP 61
Query: 86 FDVSQIQAVLKCAQKHDLLVKVRSGGHDHEGLSYLSEV--PFVMIDMINFSQIDVDAEAK 143
+ S IQA + C ++H + ++VRSGGHD+EGLSY SE PF ++DM + +D +A
Sbjct: 62 TNASHIQAAVVCGRRHGMRIRVRSGGHDYEGLSYRSEKPEPFAVVDMNKMRAVSIDGKAA 121
Query: 144 SAWVGAGATLGELYYKISEKSKNLAFPAGICPTVAVGGHLSGGGFGYIMRKYGLGADQVI 203
+AWV +GA LG+LYY I++ S L FPAG+C T+ VGGH SGGGFG ++RKYG AD VI
Sbjct: 122 TAWVDSGAQLGDLYYGIAKASPKLGFPAGVCTTIGVGGHFSGGGFGMLLRKYGTAADNVI 181
Query: 204 DAHLVDVNGRILDRKSMGEDLFWAIRGGGAASFGVLVAWKVNLVDVPSIVTVFTVQKTLE 263
DA +VD GR+LDRK+MGED FWAIRGGG SFG++ +W+V L+ VP VTVF V K ++
Sbjct: 182 DAKVVDAQGRLLDRKAMGEDHFWAIRGGGGESFGIVASWQVKLLPVPPKVTVFQVHKGIK 241
Query: 264 QNASQIHHKWQQIAYDLPKELVISAGLQSQKGKRALVATFSAVYLGGVDRLLPLMQERFP 323
+ A + KWQ +A LP +L+I Q A F A+YLG L+ LM RFP
Sbjct: 242 EGAIDLVTKWQTVAPALPDDLMIRIMAMGQG------AMFEALYLGTCKDLVLLMTARFP 295
Query: 324 ELGLVKEDCQEMSWVESTVYHFAFEIRASKNLELLLDRVNYTKYYLKAKSDYVREPIPVE 383
ELG+ C+EM+W+ES Y + + LL+R + K + K KSDYV EPIP
Sbjct: 296 ELGMNATHCKEMTWIESVPY---IPMGPKGTVRDLLNRTSNIKAFGKYKSDYVLEPIPKS 352
Query: 384 VLEGMYEILYEEGGHNIYVISFPYGGRLNEIPETEIAFPHRTNK-FHMMYFAAWSDGEES 442
E ++ L + G +I PYGG + +PE+ FP R+ F++ Y W +
Sbjct: 353 DWEKIFTWLVKPGAG--VMIMDPYGGGIASVPESATPFPRRSGVLFNIQYVVYWFGEGAA 410
Query: 443 QKVLELDRKLYEYMTPYVTKNPRATYFNCKDIEIGRNNYGNNYTSVKEASIWGKKYFKNN 502
+ R +Y++MTPYV+KNPR Y N +D+++G N N ++ +WG+KYFK N
Sbjct: 411 ALPTQWTRDIYDFMTPYVSKNPRQAYVNYRDLDLGVNQVVGNVSTYASGKVWGEKYFKGN 470
Query: 503 FYRLVDVKTKVDPGNFFRNEQSIP 526
F RL K K+DP ++FRNEQSIP
Sbjct: 471 FERLARTKGKIDPEDYFRNEQSIP 494
>pdb|3D2D|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With
(S)-Reticuline
pdb|3D2H|A Chain A, Structure Of Berberine Bridge Enzyme From Eschscholzia
Californica, Monoclinic Crystal Form
pdb|3D2J|A Chain A, Structure Of Berberine Bridge Enzyme From Eschscholzia
Californica, Tetragonal Crystal Form
Length = 538
Score = 329 bits (844), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 195/517 (37%), Positives = 292/517 (56%), Gaps = 17/517 (3%)
Query: 17 LSFFHGIALAHDTNEKFLQCLSVHSERTFISKVTYTQXXXXXXXXXXXXKQNLLYKPPEY 76
LS F + + L CL+ + R V QN L++
Sbjct: 11 LSIFLSLLNCAEAGNDLLSCLTFNGVRN--HTVFSADSDSDFNRFLHLSIQNPLFQNSLI 68
Query: 77 GRPQVIVTPFDVSQIQAVLKCAQKHDLLVKVRSGGHDHEGLSYLSEVPFVMIDMINFSQI 136
+P I+ P ++ ++C +K +++RSGGH +EGLSY S+ PF++ID++N +++
Sbjct: 69 SKPSAIILPGSKEELSNTIRCIRKGSWTIRLRSGGHSYEGLSYTSDTPFILIDLMNLNRV 128
Query: 137 DVDAEAKSAWVGAGATLGELYYKISEKSKNLAFPAGICPTVAVGGHLSGGGFGYIMRKYG 196
+D E+++AWV +G+TLGELYY I+E S L F AG CPTV GGH+SGGGFG + RKYG
Sbjct: 129 SIDLESETAWVESGSTLGELYYAITESSSKLGFTAGWCPTVGTGGHISGGGFGMMSRKYG 188
Query: 197 LGADQVIDAHLVDVNGRILDRKSMGEDLFWAIRGGGAASFGVLVAWKVNLVDVPSIVTVF 256
L AD V+DA L+D NG ILDR++MGED+FWAIRGGG +G + AWK+ L+ VP VTVF
Sbjct: 189 LAADNVVDAILIDANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVF 248
Query: 257 TVQKTLE-QNASQIHHKWQQIAYDLPKELVISAGLQSQKGKRALVATFSAVYLGGVDRLL 315
V K + A+ + HKWQ +A +L ++ +S + ++ + T + G
Sbjct: 249 RVTKNVAIDEATSLLHKWQFVAEELEEDFTLS--VLGGADEKQVWLTMLGFHFGLKTVAK 306
Query: 316 PLMQERFPELGLVKEDCQEMSWVESTVYHFAFEIRASKNLELLLDRVNYTKYYLKAKSDY 375
FPELGLV+ED EMSW ES Y E + N L + + K K D
Sbjct: 307 STFDLLFPELGLVEEDYLEMSWGESFAYLAGLETVSQLNNRFL----KFDERAFKTKVDL 362
Query: 376 VREPIPVEVLEGMYEILYEEGGHNIYVISFPYGGRLNEIPETEIAFPHRT-NKFHMMYFA 434
+EP+P + G+ E L +E N ++ +GG++++I FPHR+ + + Y
Sbjct: 363 TKEPLPSKAFYGLLERLSKE--PNGFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIV 420
Query: 435 AWSDGEESQKVLELD--RKLYEYMTPYVTKNPRATYFNCKDIEIGRNNYGNNY---TSVK 489
AW+ E+ +K LD K+YE+M P+V+KNPR Y N D+++G ++GN +++
Sbjct: 421 AWNQSEQKKKTEFLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIE 480
Query: 490 EASIWGKKYFKNNFYRLVDVKTKVDPGNFFRNEQSIP 526
+ WG+ YF +N+ RL+ KT +DP N F + QSIP
Sbjct: 481 ISRSWGESYFLSNYERLIRAKTLIDPNNVFNHPQSIP 517
>pdb|3FW9|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With
(S)-Scoulerine
Length = 495
Score = 328 bits (842), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 187/467 (40%), Positives = 280/467 (59%), Gaps = 15/467 (3%)
Query: 67 QNLLYKPPEYGRPQVIVTPFDVSQIQAVLKCAQKHDLLVKVRSGGHDHEGLSYLSEVPFV 126
QN L++ +P I+ P ++ ++C +K +++RSGGH +EGLSY S+ PF+
Sbjct: 34 QNPLFQNSLISKPSAIILPGSKEELSNTIRCIRKGSWTIRLRSGGHSYEGLSYTSDTPFI 93
Query: 127 MIDMINFSQIDVDAEAKSAWVGAGATLGELYYKISEKSKNLAFPAGICPTVAVGGHLSGG 186
+ID++N +++ +D E+++AWV +G+TLGELYY I+E S L F AG CPTV GGH+SGG
Sbjct: 94 LIDLMNLNRVSIDLESETAWVESGSTLGELYYAITESSSKLGFTAGWCPTVGTGGHISGG 153
Query: 187 GFGYIMRKYGLGADQVIDAHLVDVNGRILDRKSMGEDLFWAIRGGGAASFGVLVAWKVNL 246
GFG + RKYGL AD V+DA L+D NG ILDR++MGED+FWAIRGGG +G + AWK+ L
Sbjct: 154 GFGMMSRKYGLAADNVVDAILIDANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKL 213
Query: 247 VDVPSIVTVFTVQKTLE-QNASQIHHKWQQIAYDLPKELVISAGLQSQKGKRALVATFSA 305
+ VP VTVF V K + A+ + HKWQ +A +L ++ +S + ++ + T
Sbjct: 214 LPVPEKVTVFRVTKNVAIDEATSLLHKWQFVAEELEEDFTLS--VLGGADEKQVWLTMLG 271
Query: 306 VYLGGVDRLLPLMQERFPELGLVKEDCQEMSWVESTVYHFAFEIRASKNLELLLDRVNYT 365
+ G FPELGLV+ED EMSW ES Y E + N L +
Sbjct: 272 FHFGLKTVAKSTFDLLFPELGLVEEDYLEMSWGESFAYLAGLETVSQLNNRFL----KFD 327
Query: 366 KYYLKAKSDYVREPIPVEVLEGMYEILYEEGGHNIYVISFPYGGRLNEIPETEIAFPHRT 425
+ K K D +EP+P + G+ E L +E N ++ +GG++++I FPHR+
Sbjct: 328 ERAFKTKVDLTKEPLPSKAFYGLLERLSKE--PNGFIALNGFGGQMSKISSDFTPFPHRS 385
Query: 426 -NKFHMMYFAAWSDGEESQKVLELD--RKLYEYMTPYVTKNPRATYFNCKDIEIGRNNYG 482
+ + Y AW+ E+ +K LD K+YE+M P+V+KNPR Y N D+++G ++G
Sbjct: 386 GTRLMVEYIVAWNQSEQKKKTEFLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWG 445
Query: 483 NNY---TSVKEASIWGKKYFKNNFYRLVDVKTKVDPGNFFRNEQSIP 526
N +++ + WG+ YF +N+ RL+ KT +DP N F + QSIP
Sbjct: 446 NKTVVNNAIEISRSWGESYFLSNYERLIRAKTLIDPNNVFNHPQSIP 492
>pdb|4EC3|A Chain A, Structure Of Berberine Bridge Enzyme, H174a Variant In
Complex With (S)-Reticuline
Length = 519
Score = 328 bits (842), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 186/467 (39%), Positives = 279/467 (59%), Gaps = 15/467 (3%)
Query: 67 QNLLYKPPEYGRPQVIVTPFDVSQIQAVLKCAQKHDLLVKVRSGGHDHEGLSYLSEVPFV 126
QN L++ +P I+ P ++ ++C +K +++RSGGH +EGLSY S+ PF+
Sbjct: 40 QNPLFQNSLISKPSAIILPGSKEELSNTIRCIRKGSWTIRLRSGGHSYEGLSYTSDTPFI 99
Query: 127 MIDMINFSQIDVDAEAKSAWVGAGATLGELYYKISEKSKNLAFPAGICPTVAVGGHLSGG 186
+ID++N +++ +D E+++AWV +G+TLGELYY I+E S L F AG CPTV GG +SGG
Sbjct: 100 LIDLMNLNRVSIDLESETAWVESGSTLGELYYAITESSSKLGFTAGWCPTVGTGGAISGG 159
Query: 187 GFGYIMRKYGLGADQVIDAHLVDVNGRILDRKSMGEDLFWAIRGGGAASFGVLVAWKVNL 246
GFG + RKYGL AD V+DA L+D NG ILDR++MGED+FWAIRGGG +G + AWK+ L
Sbjct: 160 GFGMMSRKYGLAADNVVDAILIDANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKL 219
Query: 247 VDVPSIVTVFTVQKTLE-QNASQIHHKWQQIAYDLPKELVISAGLQSQKGKRALVATFSA 305
+ VP VTVF V K + A+ + HKWQ +A +L ++ +S + ++ + T
Sbjct: 220 LPVPEKVTVFRVTKNVAIDEATSLLHKWQFVAEELEEDFTLS--VLGGADEKQVWLTMLG 277
Query: 306 VYLGGVDRLLPLMQERFPELGLVKEDCQEMSWVESTVYHFAFEIRASKNLELLLDRVNYT 365
+ G FPELGLV+ED EMSW ES Y E + N L +
Sbjct: 278 FHFGLKTVAKSTFDLLFPELGLVEEDYLEMSWGESFAYLAGLETVSQLNNRFL----KFD 333
Query: 366 KYYLKAKSDYVREPIPVEVLEGMYEILYEEGGHNIYVISFPYGGRLNEIPETEIAFPHRT 425
+ K K D +EP+P + G+ E L +E N ++ +GG++++I FPHR+
Sbjct: 334 ERAFKTKVDLTKEPLPSKAFYGLLERLSKE--PNGFIALNGFGGQMSKISSDFTPFPHRS 391
Query: 426 -NKFHMMYFAAWSDGEESQKVLELD--RKLYEYMTPYVTKNPRATYFNCKDIEIGRNNYG 482
+ + Y AW+ E+ +K LD K+YE+M P+V+KNPR Y N D+++G ++G
Sbjct: 392 GTRLMVEYIVAWNQSEQKKKTEFLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWG 451
Query: 483 NNY---TSVKEASIWGKKYFKNNFYRLVDVKTKVDPGNFFRNEQSIP 526
N +++ + WG+ YF +N+ RL+ KT +DP N F + QSIP
Sbjct: 452 NKTVVNNAIEISRSWGESYFLSNYERLIRAKTLIDPNNVFNHPQSIP 498
>pdb|3GSY|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With
Dehydroscoulerine
Length = 519
Score = 328 bits (842), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 187/467 (40%), Positives = 280/467 (59%), Gaps = 15/467 (3%)
Query: 67 QNLLYKPPEYGRPQVIVTPFDVSQIQAVLKCAQKHDLLVKVRSGGHDHEGLSYLSEVPFV 126
QN L++ +P I+ P ++ ++C +K +++RSGGH +EGLSY S+ PF+
Sbjct: 40 QNPLFQNSLISKPSAIILPGSKEELSNTIRCIRKGSWTIRLRSGGHSYEGLSYTSDTPFI 99
Query: 127 MIDMINFSQIDVDAEAKSAWVGAGATLGELYYKISEKSKNLAFPAGICPTVAVGGHLSGG 186
+ID++N +++ +D E+++AWV +G+TLGELYY I+E S L F AG CPTV GGH+SGG
Sbjct: 100 LIDLMNLNRVSIDLESETAWVESGSTLGELYYAITESSSKLGFTAGWCPTVGTGGHISGG 159
Query: 187 GFGYIMRKYGLGADQVIDAHLVDVNGRILDRKSMGEDLFWAIRGGGAASFGVLVAWKVNL 246
GFG + RKYGL AD V+DA L+D NG ILDR++MGED+FWAIRGGG +G + AWK+ L
Sbjct: 160 GFGMMSRKYGLAADNVVDAILIDANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKL 219
Query: 247 VDVPSIVTVFTVQKTLE-QNASQIHHKWQQIAYDLPKELVISAGLQSQKGKRALVATFSA 305
+ VP VTVF V K + A+ + HKWQ +A +L ++ +S + ++ + T
Sbjct: 220 LPVPEKVTVFRVTKNVAIDEATSLLHKWQFVAEELEEDFTLS--VLGGADEKQVWLTMLG 277
Query: 306 VYLGGVDRLLPLMQERFPELGLVKEDCQEMSWVESTVYHFAFEIRASKNLELLLDRVNYT 365
+ G FPELGLV+ED EMSW ES Y E + N L +
Sbjct: 278 FHFGLKTVAKSTFDLLFPELGLVEEDYLEMSWGESFAYLAGLETVSQLNNRFL----KFD 333
Query: 366 KYYLKAKSDYVREPIPVEVLEGMYEILYEEGGHNIYVISFPYGGRLNEIPETEIAFPHRT 425
+ K K D +EP+P + G+ E L +E N ++ +GG++++I FPHR+
Sbjct: 334 ERAFKTKVDLTKEPLPSKAFYGLLERLSKE--PNGFIALNGFGGQMSKISSDFTPFPHRS 391
Query: 426 -NKFHMMYFAAWSDGEESQKVLELD--RKLYEYMTPYVTKNPRATYFNCKDIEIGRNNYG 482
+ + Y AW+ E+ +K LD K+YE+M P+V+KNPR Y N D+++G ++G
Sbjct: 392 GTRLMVEYIVAWNQSEQKKKTEFLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWG 451
Query: 483 NNY---TSVKEASIWGKKYFKNNFYRLVDVKTKVDPGNFFRNEQSIP 526
N +++ + WG+ YF +N+ RL+ KT +DP N F + QSIP
Sbjct: 452 NKTVVNNAIEISRSWGESYFLSNYERLIRAKTLIDPNNVFNHPQSIP 498
>pdb|3FW7|A Chain A, Structure Of Berberine Bridge Enzyme, H104a Variant
Length = 498
Score = 325 bits (834), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 186/467 (39%), Positives = 279/467 (59%), Gaps = 15/467 (3%)
Query: 67 QNLLYKPPEYGRPQVIVTPFDVSQIQAVLKCAQKHDLLVKVRSGGHDHEGLSYLSEVPFV 126
QN L++ +P I+ P ++ ++C +K +++RSGG +EGLSY S+ PF+
Sbjct: 37 QNPLFQNSLISKPSAIILPGSKEELSNTIRCIRKGSWTIRLRSGGASYEGLSYTSDTPFI 96
Query: 127 MIDMINFSQIDVDAEAKSAWVGAGATLGELYYKISEKSKNLAFPAGICPTVAVGGHLSGG 186
+ID++N +++ +D E+++AWV +G+TLGELYY I+E S L F AG CPTV GGH+SGG
Sbjct: 97 LIDLMNLNRVSIDLESETAWVESGSTLGELYYAITESSSKLGFTAGWCPTVGTGGHISGG 156
Query: 187 GFGYIMRKYGLGADQVIDAHLVDVNGRILDRKSMGEDLFWAIRGGGAASFGVLVAWKVNL 246
GFG + RKYGL AD V+DA L+D NG ILDR++MGED+FWAIRGGG +G + AWK+ L
Sbjct: 157 GFGMMSRKYGLAADNVVDAILIDANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKL 216
Query: 247 VDVPSIVTVFTVQKTLE-QNASQIHHKWQQIAYDLPKELVISAGLQSQKGKRALVATFSA 305
+ VP VTVF V K + A+ + HKWQ +A +L ++ +S + ++ + T
Sbjct: 217 LPVPEKVTVFRVTKNVAIDEATSLLHKWQFVAEELEEDFTLS--VLGGADEKQVWLTMLG 274
Query: 306 VYLGGVDRLLPLMQERFPELGLVKEDCQEMSWVESTVYHFAFEIRASKNLELLLDRVNYT 365
+ G FPELGLV+ED EMSW ES Y E + N L +
Sbjct: 275 FHFGLKTVAKSTFDLLFPELGLVEEDYLEMSWGESFAYLAGLETVSQLNNRFL----KFD 330
Query: 366 KYYLKAKSDYVREPIPVEVLEGMYEILYEEGGHNIYVISFPYGGRLNEIPETEIAFPHRT 425
+ K K D +EP+P + G+ E L +E N ++ +GG++++I FPHR+
Sbjct: 331 ERAFKTKVDLTKEPLPSKAFYGLLERLSKE--PNGFIALNGFGGQMSKISSDFTPFPHRS 388
Query: 426 -NKFHMMYFAAWSDGEESQKVLELD--RKLYEYMTPYVTKNPRATYFNCKDIEIGRNNYG 482
+ + Y AW+ E+ +K LD K+YE+M P+V+KNPR Y N D+++G ++G
Sbjct: 389 GTRLMVEYIVAWNQSEQKKKTEFLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWG 448
Query: 483 NNY---TSVKEASIWGKKYFKNNFYRLVDVKTKVDPGNFFRNEQSIP 526
N +++ + WG+ YF +N+ RL+ KT +DP N F + QSIP
Sbjct: 449 NKTVVNNAIEISRSWGESYFLSNYERLIRAKTLIDPNNVFNHPQSIP 495
>pdb|3FW8|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant
Length = 495
Score = 325 bits (833), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 186/467 (39%), Positives = 279/467 (59%), Gaps = 15/467 (3%)
Query: 67 QNLLYKPPEYGRPQVIVTPFDVSQIQAVLKCAQKHDLLVKVRSGGHDHEGLSYLSEVPFV 126
QN L++ +P I+ P ++ ++C +K +++RSGGH +EGLSY S+ PF+
Sbjct: 34 QNPLFQNSLISKPSAIILPGSKEELSNTIRCIRKGSWTIRLRSGGHSYEGLSYTSDTPFI 93
Query: 127 MIDMINFSQIDVDAEAKSAWVGAGATLGELYYKISEKSKNLAFPAGICPTVAVGGHLSGG 186
+ID++N +++ +D E+++AWV +G+TLGELYY I+E S L F AG PTV GGH+SGG
Sbjct: 94 LIDLMNLNRVSIDLESETAWVESGSTLGELYYAITESSSKLGFTAGWAPTVGTGGHISGG 153
Query: 187 GFGYIMRKYGLGADQVIDAHLVDVNGRILDRKSMGEDLFWAIRGGGAASFGVLVAWKVNL 246
GFG + RKYGL AD V+DA L+D NG ILDR++MGED+FWAIRGGG +G + AWK+ L
Sbjct: 154 GFGMMSRKYGLAADNVVDAILIDANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKL 213
Query: 247 VDVPSIVTVFTVQKTLE-QNASQIHHKWQQIAYDLPKELVISAGLQSQKGKRALVATFSA 305
+ VP VTVF V K + A+ + HKWQ +A +L ++ +S + ++ + T
Sbjct: 214 LPVPEKVTVFRVTKNVAIDEATSLLHKWQFVAEELEEDFTLS--VLGGADEKQVWLTMLG 271
Query: 306 VYLGGVDRLLPLMQERFPELGLVKEDCQEMSWVESTVYHFAFEIRASKNLELLLDRVNYT 365
+ G FPELGLV+ED EMSW ES Y E + N L +
Sbjct: 272 FHFGLKTVAKSTFDLLFPELGLVEEDYLEMSWGESFAYLAGLETVSQLNNRFL----KFD 327
Query: 366 KYYLKAKSDYVREPIPVEVLEGMYEILYEEGGHNIYVISFPYGGRLNEIPETEIAFPHRT 425
+ K K D +EP+P + G+ E L +E N ++ +GG++++I FPHR+
Sbjct: 328 ERAFKTKVDLTKEPLPSKAFYGLLERLSKE--PNGFIALNGFGGQMSKISSDFTPFPHRS 385
Query: 426 -NKFHMMYFAAWSDGEESQKVLELD--RKLYEYMTPYVTKNPRATYFNCKDIEIGRNNYG 482
+ + Y AW+ E+ +K LD K+YE+M P+V+KNPR Y N D+++G ++G
Sbjct: 386 GTRLMVEYIVAWNQSEQKKKTEFLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWG 445
Query: 483 NNY---TSVKEASIWGKKYFKNNFYRLVDVKTKVDPGNFFRNEQSIP 526
N +++ + WG+ YF +N+ RL+ KT +DP N F + QSIP
Sbjct: 446 NKTVVNNAIEISRSWGESYFLSNYERLIRAKTLIDPNNVFNHPQSIP 492
>pdb|3FWA|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant In
Complex With (S)-Reticuline
Length = 497
Score = 325 bits (833), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 186/467 (39%), Positives = 279/467 (59%), Gaps = 15/467 (3%)
Query: 67 QNLLYKPPEYGRPQVIVTPFDVSQIQAVLKCAQKHDLLVKVRSGGHDHEGLSYLSEVPFV 126
QN L++ +P I+ P ++ ++C +K +++RSGGH +EGLSY S+ PF+
Sbjct: 34 QNPLFQNSLISKPSAIILPGSKEELSNTIRCIRKGSWTIRLRSGGHSYEGLSYTSDTPFI 93
Query: 127 MIDMINFSQIDVDAEAKSAWVGAGATLGELYYKISEKSKNLAFPAGICPTVAVGGHLSGG 186
+ID++N +++ +D E+++AWV +G+TLGELYY I+E S L F AG PTV GGH+SGG
Sbjct: 94 LIDLMNLNRVSIDLESETAWVESGSTLGELYYAITESSSKLGFTAGWAPTVGTGGHISGG 153
Query: 187 GFGYIMRKYGLGADQVIDAHLVDVNGRILDRKSMGEDLFWAIRGGGAASFGVLVAWKVNL 246
GFG + RKYGL AD V+DA L+D NG ILDR++MGED+FWAIRGGG +G + AWK+ L
Sbjct: 154 GFGMMSRKYGLAADNVVDAILIDANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKL 213
Query: 247 VDVPSIVTVFTVQKTLE-QNASQIHHKWQQIAYDLPKELVISAGLQSQKGKRALVATFSA 305
+ VP VTVF V K + A+ + HKWQ +A +L ++ +S + ++ + T
Sbjct: 214 LPVPEKVTVFRVTKNVAIDEATSLLHKWQFVAEELEEDFTLS--VLGGADEKQVWLTMLG 271
Query: 306 VYLGGVDRLLPLMQERFPELGLVKEDCQEMSWVESTVYHFAFEIRASKNLELLLDRVNYT 365
+ G FPELGLV+ED EMSW ES Y E + N L +
Sbjct: 272 FHFGLKTVAKSTFDLLFPELGLVEEDYLEMSWGESFAYLAGLETVSQLNNRFL----KFD 327
Query: 366 KYYLKAKSDYVREPIPVEVLEGMYEILYEEGGHNIYVISFPYGGRLNEIPETEIAFPHRT 425
+ K K D +EP+P + G+ E L +E N ++ +GG++++I FPHR+
Sbjct: 328 ERAFKTKVDLTKEPLPSKAFYGLLERLSKE--PNGFIALNGFGGQMSKISSDFTPFPHRS 385
Query: 426 -NKFHMMYFAAWSDGEESQKVLELD--RKLYEYMTPYVTKNPRATYFNCKDIEIGRNNYG 482
+ + Y AW+ E+ +K LD K+YE+M P+V+KNPR Y N D+++G ++G
Sbjct: 386 GTRLMVEYIVAWNQSEQKKKTEFLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWG 445
Query: 483 NNY---TSVKEASIWGKKYFKNNFYRLVDVKTKVDPGNFFRNEQSIP 526
N +++ + WG+ YF +N+ RL+ KT +DP N F + QSIP
Sbjct: 446 NKTVVNNAIEISRSWGESYFLSNYERLIRAKTLIDPNNVFNHPQSIP 492
>pdb|3RJ8|A Chain A, Crystal Structure Of Carbohydrate Oxidase From
Microdochium Nivale
pdb|3RJA|A Chain A, Crystal Structure Of Carbohydrate Oxidase From
Microdochium Nivale In Complex With Substrate Analogue
Length = 473
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 117/478 (24%), Positives = 197/478 (41%), Gaps = 76/478 (15%)
Query: 79 PQVIVTPFDVSQIQAVLKCAQKHDLLVKVRSGGHDHEGLSYLSEVPFVMIDMINF-SQID 137
P I + IQ+ ++CA+K +L V +SGGH + + E +M+ + I
Sbjct: 37 PTAIAQTQTTAHIQSAVQCAKKLNLKVSAKSGGHSYASFGFGGENGHLMVQLDRMIDVIS 96
Query: 138 VDAEAKSAWVGAGATLGELYYKISEKSKNLAFPAGICPTVAVGGHLSGGGFGYIMRKYGL 197
+ + A V GA LG L +++K A G CP V + GH + GGFG+ +GL
Sbjct: 97 YNDKTGIAHVEPGARLGHLATVLNDKYGR-AISHGTCPGVGISGHFAHGGFGFSSHMHGL 155
Query: 198 GADQVIDAHLVDVNGRILDRKSM-GEDLFWAIRGGGAASFGVLVAWKVNLVDVPSIVTVF 256
D V+ +V +GRI++ + DLFW I+G G ++FG++ WK+ P ++T F
Sbjct: 156 AVDSVVGVTVVLADGRIVEASATENADLFWGIKGAG-SNFGIVAVWKLATFPAPKVLTRF 214
Query: 257 TVQKTLEQNASQI--------HHKWQQIAYDLPKELVISAGLQSQKGKRALVATFSAVYL 308
V + S + + +W P+E+ G G + +Y
Sbjct: 215 GVTLNWKNKTSALKGIEAVEDYARWVA-----PREVNFRIG-DYGAGNPGI----EGLYY 264
Query: 309 GGVDRLLPLMQERFPEL--GLVKEDCQEMSWVESTVYHFAF-----------EIRASKNL 355
G ++ Q L G V ++W+ES + + F E +K+L
Sbjct: 265 GTPEQWRAAFQPLLDTLPAGYVVNPTTSLNWIESVLSYSNFDHVDFITPQPVENFYAKSL 324
Query: 356 ELLL---DRV-NYTKYYLKAKSDYVREPIPVEVLEGMYEILYEEGGHNIYVISFPYGGRL 411
L D V N+ YY S+ V++ + L GG N ++
Sbjct: 325 TLKSIKGDAVKNFVDYYFDV-SNKVKDRF-------WFYQLDVHGGKN---------SQV 367
Query: 412 NEIPETEIAFPHRTNKFHMMYFAAWSDGEESQKVLELDRKLYEYMTPYVTKN-PRA---T 467
++ E A+PHR + + ++ + + +Q E K + VTK P++
Sbjct: 368 TKVTNAETAYPHRDKLWLIQFYDRY---DNNQTYPETSFKFLDGWVNSVTKALPKSDWGM 424
Query: 468 YFNCKDIEIGRNNYGNNYTSVKEASIWGKKYFKNNFYRLVDVKTKVDPGNFFRNEQSI 525
Y N D + R +Y + K Y+ N RL +K K DP + F Q++
Sbjct: 425 YINYADPRMDR-----DYAT--------KVYYGENLARLQKLKAKFDPTDRFYYPQAV 469
>pdb|2IPI|A Chain A, Crystal Structure Of Aclacinomycin Oxidoreductase
pdb|2IPI|B Chain B, Crystal Structure Of Aclacinomycin Oxidoreductase
pdb|2IPI|C Chain C, Crystal Structure Of Aclacinomycin Oxidoreductase
pdb|2IPI|D Chain D, Crystal Structure Of Aclacinomycin Oxidoreductase
Length = 521
Score = 88.6 bits (218), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 127/487 (26%), Positives = 196/487 (40%), Gaps = 61/487 (12%)
Query: 77 GRPQVIVTPFDVSQIQAVLKCAQKHDLLVKVRSGGHDHEGLSYLSEVPFVMIDMINFSQI 136
GRP V+ Q+ + A + VRSGGH EG V V IDM Q+
Sbjct: 54 GRPDVVYVVHTADQVVDAVNQAMAAGQRIAVRSGGHCFEGFVDDPAVRAV-IDMSQMRQV 112
Query: 137 DVDAEAKSAWVGAGATLGELYYKISEKSKNLAFPAGICPTVAVGGHLSGGGFGYIMRKYG 196
D+ ++ V GATLGE Y + + PAG+CP V VGGH+ GGG+G + R+ G
Sbjct: 113 FYDSGKRAFAVEPGATLGETYRALY-LDWGVTIPAGVCPQVGVGGHVLGGGYGPLSRRDG 171
Query: 197 LGADQV--IDAHLVDVNGRILDRK----SMGED----LFWAIRGGGAASFGVLVAWKVNL 246
+ AD + ++ +VD +GR RK S +D L+WA GGG +FG++ +
Sbjct: 172 VVADHLYAVEVVVVDASGRA--RKVVATSAADDPNRELWWAHTGGGGGNFGIVTRYWFR- 228
Query: 247 VDVPSIVTVFTVQKTLEQNASQIHH----KWQQIAYDLPKELVISAGLQSQKGKRA---L 299
P Q + S + H W + + ++ + G Q A
Sbjct: 229 --TPGATGTDPSQLLPKAPTSTLRHIVTWDWSALTEEAFTRIIDNHGAWHQSNSAAGTPY 286
Query: 300 VATFSAVYL---------------GGVDRLLPLMQERFPELGLVKEDCQEMSWVESTVYH 344
+ S YL GG+D L+ + + V E V+ +
Sbjct: 287 ASMHSVFYLNSRAAGQILLDIQIDGGLDGAEALLND---FVAAVNEGTGVEPAVQRSTEP 343
Query: 345 FAFEIRASKNLELLLDRVNYTKYYLKAKSDYVREPIPVEVLEGMYEILYEEGGHNIYVIS 404
+ A+K DR K+K Y+R+P +Y L + V
Sbjct: 344 WLRATLANKFDTGGFDRT-------KSKGAYLRKPWTAAQAATLYRHLSADSQVWGEVSL 396
Query: 405 FPYGGRLNEIPETEIAFPHRTNKFHMMYFAAWSDGEESQKVLELDRKLYEYM------TP 458
+ YGG++N +PET A R + + A W D L R++Y + P
Sbjct: 397 YSYGGKVNSVPETATATAQRDSIIKVWMSATWMDPAHDDANLAWIREIYREIFATTGGVP 456
Query: 459 YVTKNPRATYFNCKDIEIGRNNYGNNYTSVKEASIWGKKYFKNNFYRLVDVKTKVDPGNF 518
T+ N D+++ + N + V W Y+K N+ RL VK + DP +
Sbjct: 457 VPDDRTEGTFINYPDVDLVDERW--NTSGVP----WYTLYYKGNYPRLQKVKARWDPRDV 510
Query: 519 FRNEQSI 525
FR+ S+
Sbjct: 511 FRHALSV 517
>pdb|2BVF|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 3 (P1)
pdb|2BVF|B Chain B, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 3 (P1)
pdb|2BVG|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVG|B Chain B, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVG|C Chain C, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVG|D Chain D, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVH|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
pdb|2BVH|B Chain B, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
pdb|2BVH|C Chain C, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
pdb|2BVH|D Chain D, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
Length = 459
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 89/178 (50%), Gaps = 14/178 (7%)
Query: 78 RPQVIVTPFDVSQIQAVLKCAQKHDLLVKVRSGGHDHEGLSYLSEVPFVMIDMINFSQID 137
RP +I + ++ A + L + VRSGGH+ G Y + +++D+ + I
Sbjct: 38 RPSLIARCLSAGDVAKSVRYACDNGLEISVRSGGHNPNG--YATNDGGIVLDLRLMNSIH 95
Query: 138 VDAEAKSAWVGAGATLGELYYKISEKSK-NLAFPAGICPTVAVGGHLSGGGFGYIMRKYG 196
+D A +G G G+L + E +K LA G+ P V G GG G++ KYG
Sbjct: 96 IDTAGSRARIGGGVISGDL---VKEAAKFGLAAVTGMHPKVGFCGLALNGGVGFLTPKYG 152
Query: 197 LGADQVIDAHLVDVNGRIL----DRKSMGEDLFWAIRGGGAASFGVLVAWKVNLVDVP 250
L +D ++ A LV G ++ D + +LFWA+RG G +FGV+ +V L ++P
Sbjct: 153 LASDNILGATLVTATGDVIYCSDDERP---ELFWAVRGAG-PNFGVVTEVEVQLYELP 206
>pdb|2Y08|A Chain A, Structure Of The Substrate-Free Fad-Dependent Tirandamycin
Oxidase Taml
pdb|2Y08|B Chain B, Structure Of The Substrate-Free Fad-Dependent Tirandamycin
Oxidase Taml
pdb|2Y3R|A Chain A, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P21 Space Group
pdb|2Y3R|B Chain B, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P21 Space Group
pdb|2Y3R|C Chain C, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P21 Space Group
pdb|2Y3R|D Chain D, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P21 Space Group
pdb|2Y3S|A Chain A, Structure Of The Tirandamycine-Bound Fad-Dependent
Tirandamycin Oxidase Taml In C2 Space Group
pdb|2Y3S|B Chain B, Structure Of The Tirandamycine-Bound Fad-Dependent
Tirandamycin Oxidase Taml In C2 Space Group
pdb|2Y4G|A Chain A, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P212121 Space Group
pdb|2Y4G|B Chain B, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P212121 Space Group
Length = 530
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 130/492 (26%), Positives = 203/492 (41%), Gaps = 66/492 (13%)
Query: 77 GRPQVIVTPFDVSQIQAVLKCAQKHDLLVKVRSGGHDHEGLSYLSEVPFVMIDMINFSQI 136
G P+ I ++I+ VL A + V VRSGGH +E S+V VM DM S +
Sbjct: 57 GDPEEIHLVGSAAEIEQVLSRAVRSGKRVAVRSGGHCYEDFVANSDVRVVM-DMSRLSAV 115
Query: 137 DVDAEAKSAWVGAGATLGELYYKISEKSKNLAFPAGICPTVAVGGHLSGGGFGYIMRKYG 196
D E + V AGATLG + YK + + P G CP V GGH+ GGG+G + R +G
Sbjct: 116 GFDEERGAFAVEAGATLGAV-YKTLFRVWGVTLPGGACPDVGAGGHILGGGYGPLSRMHG 174
Query: 197 LGAD--QVIDAHLVDVNGR----ILDRKSM--GEDLFWAIRGGGAASFGVLVAW--KVNL 246
D ++ +VD +G I R+ DL+WA GGG +FGV+V + +
Sbjct: 175 SIVDYLHAVEVVVVDASGDARTVIATREPSDPNHDLWWAHTGGGGGNFGVVVRYWLRTAE 234
Query: 247 VDVPS---------------IVTVFTVQKTLEQNASQI---HHKW--QQIAYDLPKELVI 286
DVP TV+ + E +++ H +W Q D P +
Sbjct: 235 ADVPPEPGRLLPRPPAEVLLNTTVWPWEGLDEAAFARLVRNHGRWFEQNSGPDSPWCDLY 294
Query: 287 S--AGLQSQKGKRALVATFSAVYLGGVDRLLPLMQERFPELGL-VKEDCQEMSWVESTVY 343
S A +SQ G A+ A RL + +G+ D + + W+ ST +
Sbjct: 295 SVLALTRSQSGALAMTTQLDATGPDAEKRLETYLAAVSEGVGVQPHSDTRRLPWLHSTRW 354
Query: 344 HFAFEIRASKNLELLLDRVNYTKYYLKAKSDYVREPIPVEVLEGMYEIL----YEEGGHN 399
I ++ K K+ Y R + +Y L Y+
Sbjct: 355 P---GIAGDGDM----------TGRAKIKAAYARRSFDDRQIGTLYTRLTSTDYDNPAGV 401
Query: 400 IYVISFPYGGRLNEIPETEIAFPHRTNKFHMMYFAAWSDGEESQKVLELDRKLYEYM--- 456
+ +I+ YGG++N +P A R + ++Y W D + + R+LY +
Sbjct: 402 VALIA--YGGKVNAVPADRTAVAQRDSILKIVYVTTWEDPAQDPVHVRWIRELYRDVYAD 459
Query: 457 ---TPYVTKNPRATYFNCKDIEIGRNNYGNNYTSVKEASIWGKKYFKNNFYRLVDVKTKV 513
P Y N D+++ + N + V W + Y+K+ + RL VK +
Sbjct: 460 TGGVPVPGGAADGAYVNYPDVDLADEEW--NTSGVP----WSELYYKDAYPRLQAVKARW 513
Query: 514 DPGNFFRNEQSI 525
DP N FR+ S+
Sbjct: 514 DPRNVFRHALSV 525
>pdb|3POP|A Chain A, The Crystal Structure Of Gilr, An Oxidoreductase That
Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis
pdb|3POP|B Chain B, The Crystal Structure Of Gilr, An Oxidoreductase That
Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis
pdb|3POP|C Chain C, The Crystal Structure Of Gilr, An Oxidoreductase That
Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis
pdb|3POP|D Chain D, The Crystal Structure Of Gilr, An Oxidoreductase That
Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis
pdb|3PQB|A Chain A, The Crystal Structure Of Pregilvocarcin In Complex With
Gilr, An Oxidoreductase That Catalyzes The Terminal Step
Of Gilvocarcin Biosynthesis
pdb|3PQB|B Chain B, The Crystal Structure Of Pregilvocarcin In Complex With
Gilr, An Oxidoreductase That Catalyzes The Terminal Step
Of Gilvocarcin Biosynthesis
pdb|3PQB|C Chain C, The Crystal Structure Of Pregilvocarcin In Complex With
Gilr, An Oxidoreductase That Catalyzes The Terminal Step
Of Gilvocarcin Biosynthesis
pdb|3PQB|D Chain D, The Crystal Structure Of Pregilvocarcin In Complex With
Gilr, An Oxidoreductase That Catalyzes The Terminal Step
Of Gilvocarcin Biosynthesis
Length = 501
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 124/497 (24%), Positives = 199/497 (40%), Gaps = 82/497 (16%)
Query: 79 PQVIVTPFDVSQIQAVLKCAQKHDLLVKVRSGGHDHEGLSYLSEVPFVMIDMINFSQIDV 138
P+ P + A L+ A V RSGGH + V+ D+ N I
Sbjct: 35 PEEFFLPATPDDVVASLQKAVTEGRGVACRSGGHCGQDFVGTPRRDLVL-DLHNLHAIGP 93
Query: 139 DAEAKSAWVGAGATLGELYYKISEKSKNLAFPAGICPTVAVGGHLSGGGFGYIMRKYGLG 198
A+ VG+GAT+ ++ + + N A P G C V +GG ++GGG+G + R+ GL
Sbjct: 94 AADGAGVRVGSGATVDQVQKALFRR-WNAALPLGACSAVGMGGLVAGGGYGPLSRQLGLV 152
Query: 199 ADQV--IDAHLVD-------VNGRILDRKSMGEDLFWAIRGGGAASFGVLVAWKVNLVDV 249
D + ++ +VD V R D +GE LFWA GGG +FGV+ A++
Sbjct: 153 VDHLHAVEVAVVDESRTVRLVTARADDTGDLGE-LFWAHTGGGGGNFGVVTAYEFR---- 207
Query: 250 PSIVTVFTVQKTLEQNASQIHHKWQQIAYDLPKELVISAGLQ---------SQKG--KRA 298
S + T L + A ++H + + + E ++ S+ G + +
Sbjct: 208 -SPEHLATEPVGLPRAAGRLHVQKVVFPWAMIDETSFVTVMRRFFEWHERHSEPGSPESS 266
Query: 299 LVATFSAVYLGG------------VD-------RLLPLMQERFPELGLVKEDCQEMSWVE 339
L ATF ++ VD R + + E +G+ + MSW+
Sbjct: 267 LFATFFVNHVSSGVLQLMVQQDADVDPEGEILARFVASLTEGTGVVGIPRGGV--MSWLT 324
Query: 340 STVYHFAFEIRASKNLELLLDR-VNYTKYYLKAKSDYVREPIPVEVLEGMYEILY-EEGG 397
T Y + + +++ R + + Y+ A +D E L ++ L+ + G
Sbjct: 325 GTRY-----MSQADCGDVMGARSASKSAYHRAAPTD--------EQLSVLHRHLHADHPG 371
Query: 398 HNIYVISFPYGGRLNEIPETEIAFPHRTNKFHMMYFAAWSDGEESQKVLELDRKLYE--- 454
YV+ YGG +N ++ A P R + +F+AW D E + L R LYE
Sbjct: 372 QASYVMFNSYGGEINRRGPSDAAVPQRDSVVKSSWFSAWQDAELDELHLGWLRGLYEEFF 431
Query: 455 ---YMTPYVTKNPRATYFNCKDIEI---GRNNYGNNYTSVKEASIWGKKYFKNNFYRLVD 508
P Y N D ++ RN G W Y+K+N+ RL
Sbjct: 432 AGTGGVPVTGGRTDGCYINYPDADLLDPARNRSGEP---------WHHLYYKDNYARLRS 482
Query: 509 VKTKVDPGNFFRNEQSI 525
K DP N F + SI
Sbjct: 483 AKRAWDPLNTFHHSMSI 499
>pdb|1ZR6|A Chain A, The Crystal Structure Of An Acremonium Strictum
Glucooligosaccharide Oxidase Reveals A Novel
Flavinylation
pdb|2AXR|A Chain A, Crystal Structure Of Glucooligosaccharide Oxidase From
Acremonium Strictum: A Novel Flavinylation Of
6-S-Cysteinyl, 8alpha-N1-Histidyl Fad
Length = 503
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 106/474 (22%), Positives = 191/474 (40%), Gaps = 57/474 (12%)
Query: 79 PQVIVTPFDVSQIQAVLKCAQKHDLLVKVRSGGHDHEGLSYLSEVPFVMIDMINFSQIDV 138
P I P I A ++C + + + GGH + + E +M+++ ++ V
Sbjct: 43 PAAIAIPRSTEDIAAAVQCGLDAGVQISAKGGGHSYGSYGFGGEDGHLMLELDRMYRVSV 102
Query: 139 DAEAKSAWVGAGATLGELYYKISEKSKNLAFPAGICPTVAVGGHLSGGGFGYIMRKYGLG 198
D + A + GA LG ++ ++ N A G CP V VGGH+ GGG+G+ +GL
Sbjct: 103 D-DNNVATIQGGARLGYTALELLDQG-NRALSHGTCPAVGVGGHVLGGGYGFATHTHGLT 160
Query: 199 ADQVIDAHLVDVNGRILD-RKSMGEDLFWAIRGGGAASFGVLVAWKVNLVDVPSIVTVFT 257
D +I A +V + I+ ++ DLFWA+RGGG F ++ ++ N + P I+T +
Sbjct: 161 LDWLIGATVVLADASIVHVSETENADLFWALRGGGGG-FAIVSEFEFNTFEAPEIITTYQ 219
Query: 258 VQKTL--EQNASQIH--HKWQQIAYDLPKELVISAGLQSQKGKRALVATFSAVYLGGVDR 313
V T +Q+ + + W Q +P+EL + + + + + G
Sbjct: 220 VTTTWNRKQHVAGLKALQDWAQNT--MPRELSMRLEINAN------ALNWEGNFFGNAKD 271
Query: 314 LLPLMQERFPELG--LVKEDCQEMSWV-ESTVYHFAFEIRASKNLEL-------LLDRVN 363
L ++Q + G E W + Y + ++ + N ++ L
Sbjct: 272 LKKILQPIMKKAGGKSTISKLVETDWYGQINTYLYGADLNITYNYDVHEYFYANSLTAPR 331
Query: 364 YTKYYLKAKSDYVREPIPVEVLEGMYEILYEEGGHNIYVISFPYGGRLNEIPETEIAFPH 423
+ ++A DY + V G + GG N L + E A+ H
Sbjct: 332 LSDEAIQAFVDYKFDNSSVRPGRGWWIQWDFHGGKN---------SALAAVSNDETAYAH 382
Query: 424 RTNKFHMMYFAAWSDGEESQKVLELDRKLYEYMTPYVT-------KNPRATYFNCKDIEI 476
R + ++ + D E + +E+M +V ++ + YFN D +
Sbjct: 383 RDQLWLWQFYDSIYDYENNTSPYP--ESGFEFMQGFVATIEDTLPEDRKGKYFNYADTTL 440
Query: 477 GRNNYGNNYTSVKEASIWGKKYFKNNFYRLVDVKTKVDPGNFFRNEQSIPSRIY 530
+ +EA K Y++ N +L +K K DP + F N S+ Y
Sbjct: 441 TK----------EEAQ---KLYWRGNLEKLQAIKAKYDPEDVFGNVVSVEPIAY 481
>pdb|3HSU|A Chain A, Functional Roles Of The 6-S-Cysteinyl, 8 Alpha-N1-Histidyl
Fad In Glucooligosaccharide Oxidase From Acremonium
Strictum
Length = 503
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 105/474 (22%), Positives = 190/474 (40%), Gaps = 57/474 (12%)
Query: 79 PQVIVTPFDVSQIQAVLKCAQKHDLLVKVRSGGHDHEGLSYLSEVPFVMIDMINFSQIDV 138
P I P I A ++C + + + GGH + + E +M+++ ++ V
Sbjct: 43 PAAIAIPRSTEDIAAAVQCGLDAGVQISAKGGGHSYGSYGFGGEDGHLMLELDRMYRVSV 102
Query: 139 DAEAKSAWVGAGATLGELYYKISEKSKNLAFPAGICPTVAVGGHLSGGGFGYIMRKYGLG 198
D + A + GA LG ++ ++ N A G P V VGGH+ GGG+G+ +GL
Sbjct: 103 D-DNNVATIQGGARLGYTALELLDQG-NRALSHGTAPAVGVGGHVLGGGYGFATHTHGLT 160
Query: 199 ADQVIDAHLVDVNGRILD-RKSMGEDLFWAIRGGGAASFGVLVAWKVNLVDVPSIVTVFT 257
D +I A +V + I+ ++ DLFWA+RGGG F ++ ++ N + P I+T +
Sbjct: 161 LDWLIGATVVLADASIVHVSETENADLFWALRGGGGG-FAIVSEFEFNTFEAPEIITTYQ 219
Query: 258 VQKTL--EQNASQIH--HKWQQIAYDLPKELVISAGLQSQKGKRALVATFSAVYLGGVDR 313
V T +Q+ + + W Q +P+EL + + + + + G
Sbjct: 220 VTTTWNRKQHVAGLKALQDWAQNT--MPRELSMRLEINAN------ALNWEGNFFGNAKD 271
Query: 314 LLPLMQERFPELG--LVKEDCQEMSWV-ESTVYHFAFEIRASKNLEL-------LLDRVN 363
L ++Q + G E W + Y + ++ + N ++ L
Sbjct: 272 LKKILQPIMKKAGGKSTISKLVETDWYGQINTYLYGADLNITYNYDVHEYFYANSLTAPR 331
Query: 364 YTKYYLKAKSDYVREPIPVEVLEGMYEILYEEGGHNIYVISFPYGGRLNEIPETEIAFPH 423
+ ++A DY + V G + GG N L + E A+ H
Sbjct: 332 LSDEAIQAFVDYKFDNSSVRPGRGWWIQWDFHGGKN---------SALAAVSNDETAYAH 382
Query: 424 RTNKFHMMYFAAWSDGEESQKVLELDRKLYEYMTPYVT-------KNPRATYFNCKDIEI 476
R + ++ + D E + +E+M +V ++ + YFN D +
Sbjct: 383 RDQLWLWQFYDSIYDYENNTSPYP--ESGFEFMQGFVATIEDTLPEDRKGKYFNYADTTL 440
Query: 477 GRNNYGNNYTSVKEASIWGKKYFKNNFYRLVDVKTKVDPGNFFRNEQSIPSRIY 530
+ +EA K Y++ N +L +K K DP + F N S+ Y
Sbjct: 441 TK----------EEAQ---KLYWRGNLEKLQAIKAKYDPEDVFGNVVSVEPIAY 481
>pdb|2WDW|A Chain A, The Native Crystal Structure Of The Primary Hexose Oxidase
( Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDW|B Chain B, The Native Crystal Structure Of The Primary Hexose Oxidase
( Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDX|A Chain A, The Complexed Crystal Structure Of The Primary Hexose
Oxidase (Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDX|B Chain B, The Complexed Crystal Structure Of The Primary Hexose
Oxidase (Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDX|C Chain C, The Complexed Crystal Structure Of The Primary Hexose
Oxidase (Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDX|D Chain D, The Complexed Crystal Structure Of The Primary Hexose
Oxidase (Dbv29) In Antibiotic A40926 Biosynthesis
Length = 523
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 69/165 (41%), Gaps = 17/165 (10%)
Query: 370 KAKSDYVREPIPVEVLEGMYEILYEEGGHN---IYVISFPYGGRLNEIPETEIAFPHRTN 426
K K+ Y+R+ + ++ +YE + G + +++I YGG++N + A P R
Sbjct: 365 KTKAGYLRKRLTDRQIQAVYENMTHMDGIDYGAVWLIG--YGGKVNTVDPAATALPQRDA 422
Query: 427 KFHMMYFAAWSDGEESQKVLELDRKLYEYM------TPYVTKNPRATYFNCKDIEIGRNN 480
+ Y W++ K L RKLY + P Y N D ++ +
Sbjct: 423 ILKVNYITGWANPGNEAKHLTWVRKLYADVYAETGGVPVPNDVSDGAYINYPDSDLA--D 480
Query: 481 YGNNYTSVKEASIWGKKYFKNNFYRLVDVKTKVDPGNFFRNEQSI 525
G N + V W Y+K N RL VK DP N F + SI
Sbjct: 481 PGLNTSGVP----WHDLYYKGNHPRLRKVKAAYDPRNHFHHALSI 521
Score = 35.4 bits (80), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 83/172 (48%), Gaps = 10/172 (5%)
Query: 77 GRPQVIVTPFDVSQIQAVLKCAQKHDLLVKVRSGGHDHEGLSYLSEVPFVMIDMINFSQI 136
G P I Q+ ++ + V VRSGGH E +V V+IDM ++I
Sbjct: 56 GEPDYIHLVGSTQQVADAVEETVRTGKRVAVRSGGHCFEDFVDNPDV-KVIIDMSLLTEI 114
Query: 137 DVDAEAKSAWVGAGATLGELYYKISEKSKNLAFPAGICPTVAVGGHLSGGGFGYIMRKYG 196
D + + G TL E+Y K+ N+ P G+C V VGGH+ GGG+G + R++G
Sbjct: 115 AYDPSMNAFLIEPGNTLSEVYEKLY-LGWNVTIPGGVCGGVGVGGHICGGGYGPLSRQFG 173
Query: 197 LGADQVIDAHLVDVN----GRIL----DRKSMGEDLFWAIRGGGAASFGVLV 240
D + +V VN R++ +R DL+WA GGG +FGV+
Sbjct: 174 SVVDYLYAVEVVVVNKQGKARVIVATRERDDPHHDLWWAHTGGGGGNFGVVT 225
>pdb|3PM9|A Chain A, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|B Chain B, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|C Chain C, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|D Chain D, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|E Chain E, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|F Chain F, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
Length = 476
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/190 (22%), Positives = 77/190 (40%), Gaps = 21/190 (11%)
Query: 77 GRPQVIVTPFDVSQIQAVLKCAQKHDLLVKVRSGGHDHEGLSYLSEVPF---VMIDMINF 133
G +++ P ++ A+ K A + + + + G G + P V+I +
Sbjct: 50 GHSPLVLRPGSTEEVVAICKLANEARVALVPQGGNTGLVG----GQTPHNGEVVISLKRX 105
Query: 134 SQI-DVDAEAKSAWVGAGATLGELYYKISEKSKNLAFPAGICPTVAVGGHLSGGGFGYIM 192
+I ++D + + V AGA L + K +E + G + +GG+LS G
Sbjct: 106 DKIREIDTSSNTITVEAGAILQRVQEKAAEVDRLFPLSLGAQGSCTIGGNLSTNAGGTAA 165
Query: 193 RKYGLGADQVIDAHLVDVNGRI------LDRKSMG---EDLFWAIRGGGAASFGVLVAWK 243
YGL D + +V +GR+ L + + G DLF G + G++ A
Sbjct: 166 LAYGLARDXALGVEVVLADGRVXNLLSKLKKDNTGYDLRDLFIGAEG----TLGIITAAT 221
Query: 244 VNLVDVPSIV 253
+ L P V
Sbjct: 222 LKLFPKPRAV 231
>pdb|1WVE|A Chain A, P-Cresol Methylhydroxylase: Alteration Of The Structure Of
The Flavoprotein Subunit Upon Its Binding To The
Cytochrome Subunit
pdb|1WVE|B Chain B, P-Cresol Methylhydroxylase: Alteration Of The Structure Of
The Flavoprotein Subunit Upon Its Binding To The
Cytochrome Subunit
pdb|1WVF|A Chain A, P-cresol Methylhydroxylase: Alteration Of The Structure Of
The Flavoprotein Subunit Upon Its Binding To The
Cytochrome Subunit
Length = 520
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 54/121 (44%), Gaps = 15/121 (12%)
Query: 79 PQVIVTPFDVSQIQAVLKCAQKHDLLVKVRSGGHDHEGLSYLSEVPF----VMIDMINFS 134
P VT V Q+Q V+K +H + + S G + Y S P V++D+ +
Sbjct: 57 PSAAVTATTVEQVQGVVKICNEHKIPIWTISTGRN---FGYGSAAPVQRGQVILDLKKMN 113
Query: 135 QI-DVDAEAKSAWVGAGATLGELYYKISEKSKN--LAFPAGICPTVAVG--GHLSGGGFG 189
+I +D E A V G T G++Y I E + L+F A P+ G G+ G G
Sbjct: 114 KIIKIDPEMCYALVEPGVTFGQMYDYIQENNLPVMLSFSA---PSAIAGPVGNTMDRGVG 170
Query: 190 Y 190
Y
Sbjct: 171 Y 171
>pdb|1DII|A Chain A, Crystal Structure Of P-Cresol Methylhydroxylase At 2.5 A
Resolution
pdb|1DII|B Chain B, Crystal Structure Of P-Cresol Methylhydroxylase At 2.5 A
Resolution
pdb|1DIQ|A Chain A, Crystal Structure Of P-Cresol Methylhydroxylase With
Substrate Bound
pdb|1DIQ|B Chain B, Crystal Structure Of P-Cresol Methylhydroxylase With
Substrate Bound
Length = 521
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 54/121 (44%), Gaps = 15/121 (12%)
Query: 79 PQVIVTPFDVSQIQAVLKCAQKHDLLVKVRSGGHDHEGLSYLSEVPF----VMIDMINFS 134
P VT V Q+Q V+K +H + + S G + Y S P V++D+ +
Sbjct: 58 PSAAVTATTVEQVQGVVKICNEHKIPIWTISTGRN---FGYGSAAPVQRGQVILDLKKMN 114
Query: 135 QI-DVDAEAKSAWVGAGATLGELYYKISEKSKN--LAFPAGICPTVAVG--GHLSGGGFG 189
+I +D E A V G T G++Y I E + L+F A P+ G G+ G G
Sbjct: 115 KIIKIDPEMCYALVEPGVTFGQMYDYIQENNLPVMLSFSA---PSAIAGPVGNTMDRGVG 171
Query: 190 Y 190
Y
Sbjct: 172 Y 172
>pdb|2EXR|A Chain A, X-Ray Structure Of Cytokinin OxidaseDEHYDROGENASE (CKX)
FROM Arabidopsis Thaliana At5g21482
pdb|2Q4W|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Cytokinin OxidaseDEHYDROGENASE (CKX) FROM ARABIDOPSIS
THALIANA AT5G21482
Length = 524
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 71/327 (21%), Positives = 115/327 (35%), Gaps = 55/327 (16%)
Query: 78 RPQVIVTPFDVSQIQAVLKCAQKHD-LLVKVRSGGHDHEGLSYLSEVPFVMIDMINFSQI 136
+P +V P I +K A + D L V R GH G + V +
Sbjct: 61 KPLAVVRPVGPEDIAGAVKAALRSDKLTVAARGNGHSINGQAXAEGGLVVDXSTTAENHF 120
Query: 137 DVD-AEAKSAWVGAGATLGELYYKISEKSKNLAFPAGICPT-------VAVGGHLSGGGF 188
+V A + G L+ + K G+ P + VGG LS G
Sbjct: 121 EVGYLSGGDATAFVDVSGGALWEDVL---KRCVSEYGLAPRSWTDYLGLTVGGTLSNAGV 177
Query: 189 GYIMRKYGLGADQVIDAHLVDVNGRILDRKSM-GEDLFWAIRGGGAASFGVLVAWKVNLV 247
+YG V + +V NG ++ + +LF+++ GG FG++ +V L
Sbjct: 178 SGQAFRYGPQTSNVTELDVVTGNGDVVTCSEIENSELFFSVL-GGLGQFGIITRARVLLQ 236
Query: 248 DVPSIVTVFTVQKTLEQNASQIHHKWQQIAYDLPKELVISAG-LQSQKGKRALVATFSAV 306
P V +W ++ Y E A L SQK + + V
Sbjct: 237 PAPDXV------------------RWIRVVYTEFDEFTQDAEWLVSQKNESSFDYVEGFV 278
Query: 307 YLGGVDRL-----LPLMQE------RFP----------ELGLVKEDCQEMSWVESTVYHF 345
++ G D + +PL + R P ELGL D S ++ V
Sbjct: 279 FVNGADPVNGWPTVPLHPDHEFDPTRLPQSCGSVLYCLELGLHYRDSDSNSTIDKRVERL 338
Query: 346 AFEIRASKNLELLLDRVNYTKYYLKAK 372
+R ++ L +D + Y + L+ K
Sbjct: 339 IGRLRFNEGLRFEVD-LPYVDFLLRVK 364
>pdb|2UUU|A Chain A, Alkyldihydroxyacetonephosphate Synthase In P212121
pdb|2UUU|B Chain B, Alkyldihydroxyacetonephosphate Synthase In P212121
pdb|2UUU|C Chain C, Alkyldihydroxyacetonephosphate Synthase In P212121
pdb|2UUU|D Chain D, Alkyldihydroxyacetonephosphate Synthase In P212121
pdb|2UUV|A Chain A, Alkyldihydroxyacetonephosphate Synthase In P1
pdb|2UUV|B Chain B, Alkyldihydroxyacetonephosphate Synthase In P1
pdb|2UUV|C Chain C, Alkyldihydroxyacetonephosphate Synthase In P1
pdb|2UUV|D Chain D, Alkyldihydroxyacetonephosphate Synthase In P1
Length = 584
Score = 32.3 bits (72), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 62/139 (44%), Gaps = 3/139 (2%)
Query: 79 PQVIVTPFDVSQIQAVLKCAQKHDLLVKVRSGGHDHEG-LSYLSEVPF-VMIDMINFSQI 136
P +IV P +++ +++ A K+++++ GG + G + +S F V IDM +++
Sbjct: 138 PDLIVLPHSHEEVERLVQLAHKYNVVIIPMGGGSNIVGAIEPVSNERFTVSIDMRRMNKV 197
Query: 137 D-VDAEAKSAWVGAGATLGELYYKISEKSKNLAFPAGICPTVAVGGHLSGGGFGYIMRKY 195
VD +A + G EL ++ ++ +L +GG L+ G+ KY
Sbjct: 198 LWVDRREMTACIQVGIMGPELEKQLHKQGVSLGHDPDSFEFSTLGGWLATCSSGHQSDKY 257
Query: 196 GLGADQVIDAHLVDVNGRI 214
G D + V G +
Sbjct: 258 GDIEDMAVSFRTVTPTGTL 276
>pdb|2VFR|A Chain A, Alditol Oxidase From Streptomyces Coelicolor A3(2): Native
Enzyme
pdb|2VFS|A Chain A, Alditol Oxidase From Streptomyces Coelicolor A3(2):
Complex With Xylitol
pdb|2VFT|A Chain A, Alditol Oxidase From Streptomyces Coelicolor A3(2):
Complex With Sorbitol
pdb|2VFU|A Chain A, Alditol Oxidase From Streptomyces Coelicolor A3(2):
Complex With Mannitol
pdb|2VFV|A Chain A, Alditol Oxidase From Streptomyces Coelicolor A3(2):
Complex With Sulphite
Length = 422
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 48/113 (42%), Gaps = 21/113 (18%)
Query: 134 SQIDVDAEAKSAWVGAGATLGELYYKISEKSKNLAFP-------AGICPTVAVGGHLSGG 186
S +DVD A++ VG G EL + ++ LA P + +VA G H SG
Sbjct: 72 SVVDVDTAARTVRVGGGVRYAELARVV--HARGLALPNMASLPHISVAGSVATGTHGSGV 129
Query: 187 GFGYIMRKYGLGADQVIDAHLVDVNGRILDRKSMGEDLFWAIRGGGAASFGVL 239
G G + A V + LV +G + + G++ F GG S G L
Sbjct: 130 GNGSL-------ASVVREVELVTADGSTV-VIARGDERF----GGAVTSLGAL 170
>pdb|2CVO|A Chain A, Crystal Structure Of Putative N-Acetyl-Gamma-Glutamyl-
Phosphate Reductase (Ak071544) From Rice (Oryza Sativa)
pdb|2CVO|B Chain B, Crystal Structure Of Putative N-Acetyl-Gamma-Glutamyl-
Phosphate Reductase (Ak071544) From Rice (Oryza Sativa)
pdb|2CVO|C Chain C, Crystal Structure Of Putative N-Acetyl-Gamma-Glutamyl-
Phosphate Reductase (Ak071544) From Rice (Oryza Sativa)
pdb|2CVO|D Chain D, Crystal Structure Of Putative N-Acetyl-Gamma-Glutamyl-
Phosphate Reductase (Ak071544) From Rice (Oryza Sativa)
Length = 366
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 120 LSEVPFVMIDMINFSQIDVDAEAKSAWVGAGATLGELYYKISE 162
L VP + +I S I +DA++ + G GA LY +I+E
Sbjct: 177 LPLVPLIKAKLIKVSNIIIDAKSGVSGAGRGAKEANLYTEIAE 219
>pdb|3FXA|A Chain A, Crystal Structure Of A Putative Sugar-Phosphate Isomerase
(Lmof2365_0531) From Listeria Monocytogenes Str. 4b
F2365 At 1.60 A Resolution
pdb|3FXA|B Chain B, Crystal Structure Of A Putative Sugar-Phosphate Isomerase
(Lmof2365_0531) From Listeria Monocytogenes Str. 4b
F2365 At 1.60 A Resolution
pdb|3FXA|C Chain C, Crystal Structure Of A Putative Sugar-Phosphate Isomerase
(Lmof2365_0531) From Listeria Monocytogenes Str. 4b
F2365 At 1.60 A Resolution
pdb|3FXA|D Chain D, Crystal Structure Of A Putative Sugar-Phosphate Isomerase
(Lmof2365_0531) From Listeria Monocytogenes Str. 4b
F2365 At 1.60 A Resolution
Length = 201
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 78 RPQVIVTPFDVSQIQAVLKCAQKHDLLVKVRSGGHDHEGLSYL 120
RP V +TP D + L QK D+L+ + GG+ E L+ +
Sbjct: 72 RPAVFLTPSDA--VHGTLGVLQKEDILILISKGGNTGELLNLI 112
>pdb|1A4S|A Chain A, Betaine Aldehyde Dehydrogenase From Cod Liver
pdb|1A4S|B Chain B, Betaine Aldehyde Dehydrogenase From Cod Liver
pdb|1A4S|C Chain C, Betaine Aldehyde Dehydrogenase From Cod Liver
pdb|1A4S|D Chain D, Betaine Aldehyde Dehydrogenase From Cod Liver
pdb|1BPW|A Chain A, Betaine Aldehyde Dehydrogenase From Cod Liver
pdb|1BPW|B Chain B, Betaine Aldehyde Dehydrogenase From Cod Liver
pdb|1BPW|C Chain C, Betaine Aldehyde Dehydrogenase From Cod Liver
pdb|1BPW|D Chain D, Betaine Aldehyde Dehydrogenase From Cod Liver
Length = 503
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Query: 126 VMIDMINFSQIDVDAEAKSAWVGAGATLGELYYKISEKSKNLAFPAGICPTVAVGGH--L 183
VM++ + D AK + G T+ E Y I + + + AG+ PT++ G H L
Sbjct: 85 VMLEAARIIRERRDNIAKLEVINNGKTITEAEYDIDAAWQCIEYYAGLAPTLS-GQHIQL 143
Query: 184 SGGGFGYIMRK 194
GG F Y R+
Sbjct: 144 PGGAFAYTRRE 154
>pdb|2W58|A Chain A, Crystal Structure Of The Dnai
pdb|2W58|B Chain B, Crystal Structure Of The Dnai
Length = 202
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 7/34 (20%)
Query: 114 HEGLSYLSEVPFVMIDMINFSQIDVDAEAKSAWV 147
+E L Y+ +VP +M+D D+ AEA S+WV
Sbjct: 107 NEKLDYIKKVPVLMLD-------DLGAEAMSSWV 133
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,634,287
Number of Sequences: 62578
Number of extensions: 709134
Number of successful extensions: 1657
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1562
Number of HSP's gapped (non-prelim): 38
length of query: 538
length of database: 14,973,337
effective HSP length: 103
effective length of query: 435
effective length of database: 8,527,803
effective search space: 3709594305
effective search space used: 3709594305
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)