Query 009286
Match_columns 538
No_of_seqs 274 out of 2240
Neff 8.1
Searched_HMMs 46136
Date Thu Mar 28 22:42:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009286.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009286hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02441 cytokinin dehydrogena 100.0 8.1E-39 1.8E-43 340.6 42.5 207 48-266 41-258 (525)
2 PLN02805 D-lactate dehydrogena 100.0 2.5E-34 5.3E-39 310.8 35.4 193 77-273 132-331 (555)
3 TIGR01678 FAD_lactone_ox sugar 100.0 3.8E-33 8.3E-38 295.1 35.1 195 71-277 7-204 (438)
4 PRK11230 glycolate oxidase sub 100.0 2.6E-33 5.6E-38 301.3 31.9 197 75-273 52-254 (499)
5 TIGR01677 pln_FAD_oxido plant- 100.0 6.2E-33 1.4E-37 299.2 32.1 203 30-254 2-216 (557)
6 COG0277 GlcD FAD/FMN-containin 100.0 2.1E-32 4.6E-37 294.4 30.4 186 75-263 28-220 (459)
7 TIGR01679 bact_FAD_ox FAD-link 100.0 1.8E-31 4E-36 282.0 34.2 175 71-254 4-180 (419)
8 TIGR01676 GLDHase galactonolac 100.0 2.7E-32 5.8E-37 290.3 23.3 195 71-277 54-251 (541)
9 TIGR00387 glcD glycolate oxida 100.0 7.2E-32 1.6E-36 285.3 25.6 190 82-273 1-197 (413)
10 KOG1231 Proteins containing th 100.0 1.3E-30 2.7E-35 262.0 23.8 175 74-251 59-240 (505)
11 PRK11282 glcE glycolate oxidas 100.0 1.4E-29 3.1E-34 259.1 19.8 170 87-261 3-181 (352)
12 PLN02465 L-galactono-1,4-lacto 100.0 1.8E-28 3.8E-33 263.2 23.2 177 70-253 88-267 (573)
13 PF01565 FAD_binding_4: FAD bi 99.9 4.9E-27 1.1E-31 211.5 11.3 136 79-216 1-137 (139)
14 PRK11183 D-lactate dehydrogena 99.9 8.5E-24 1.8E-28 222.0 20.0 195 76-274 36-290 (564)
15 KOG4730 D-arabinono-1, 4-lacto 99.9 6.1E-24 1.3E-28 214.0 15.1 210 25-259 15-227 (518)
16 PRK13905 murB UDP-N-acetylenol 99.9 2.7E-24 5.9E-29 217.5 12.2 163 76-250 28-193 (298)
17 KOG1232 Proteins containing th 99.9 5.1E-22 1.1E-26 195.4 18.8 188 67-256 78-272 (511)
18 PRK14652 UDP-N-acetylenolpyruv 99.9 3.1E-21 6.7E-26 194.5 13.6 163 75-250 32-196 (302)
19 TIGR00179 murB UDP-N-acetyleno 99.9 2.7E-21 5.8E-26 193.8 12.4 163 75-248 9-174 (284)
20 PRK12436 UDP-N-acetylenolpyruv 99.9 2.7E-21 5.9E-26 195.3 12.5 163 75-249 33-197 (305)
21 PRK13906 murB UDP-N-acetylenol 99.8 5.6E-21 1.2E-25 193.1 12.8 161 77-249 35-197 (307)
22 KOG1233 Alkyl-dihydroxyacetone 99.8 6.3E-20 1.4E-24 181.0 15.1 191 71-262 153-352 (613)
23 PRK13903 murB UDP-N-acetylenol 99.8 5.5E-20 1.2E-24 188.6 15.0 165 75-250 29-197 (363)
24 PRK14649 UDP-N-acetylenolpyruv 99.8 3.2E-19 7E-24 179.5 15.8 166 75-250 17-193 (295)
25 PRK14653 UDP-N-acetylenolpyruv 99.7 3.2E-17 7E-22 164.4 12.4 161 76-250 31-194 (297)
26 COG0812 MurB UDP-N-acetylmuram 99.7 3.5E-16 7.7E-21 153.9 13.0 165 75-249 17-183 (291)
27 PRK14650 UDP-N-acetylenolpyruv 99.7 4.6E-16 1E-20 155.6 11.1 163 76-250 30-195 (302)
28 PRK00046 murB UDP-N-acetylenol 99.6 6.7E-16 1.5E-20 156.7 10.7 162 76-249 18-188 (334)
29 PF08031 BBE: Berberine and be 99.6 4E-16 8.7E-21 112.2 3.3 47 467-526 1-47 (47)
30 PRK14648 UDP-N-acetylenolpyruv 99.6 4.6E-15 9.9E-20 150.4 12.2 167 76-250 27-237 (354)
31 KOG1262 FAD-binding protein DI 99.6 3.1E-15 6.8E-20 148.3 9.4 166 87-254 62-233 (543)
32 PRK14651 UDP-N-acetylenolpyruv 99.5 3.7E-13 8E-18 132.9 13.5 149 78-249 20-170 (273)
33 PRK13904 murB UDP-N-acetylenol 99.2 1.9E-10 4.2E-15 112.6 11.9 142 78-250 18-160 (257)
34 PF00941 FAD_binding_5: FAD bi 95.3 0.022 4.8E-07 53.0 4.6 77 79-159 2-80 (171)
35 PRK09799 putative oxidoreducta 94.5 0.12 2.7E-06 51.3 7.6 144 81-245 4-155 (258)
36 PRK09971 xanthine dehydrogenas 94.1 0.11 2.4E-06 52.6 6.4 102 81-186 6-118 (291)
37 TIGR03312 Se_sel_red_FAD proba 93.3 0.26 5.6E-06 49.0 7.4 142 82-245 4-154 (257)
38 PF09265 Cytokin-bind: Cytokin 92.7 0.18 3.9E-06 50.4 5.2 33 492-525 248-280 (281)
39 TIGR02963 xanthine_xdhA xanthi 92.4 0.31 6.7E-06 52.7 7.0 104 79-186 192-303 (467)
40 TIGR03195 4hydrxCoA_B 4-hydrox 90.7 0.41 8.8E-06 49.1 5.4 75 80-158 5-81 (321)
41 PLN00107 FAD-dependent oxidore 89.5 0.82 1.8E-05 44.8 6.1 27 495-523 172-198 (257)
42 PF02913 FAD-oxidase_C: FAD li 89.1 0.5 1.1E-05 45.9 4.5 76 427-520 168-244 (248)
43 TIGR03199 pucC xanthine dehydr 88.8 0.58 1.3E-05 46.7 4.8 70 85-158 1-73 (264)
44 PF04030 ALO: D-arabinono-1,4- 87.8 1.4 3.1E-05 43.6 6.8 27 494-522 228-254 (259)
45 PLN02906 xanthine dehydrogenas 84.2 1.6 3.5E-05 53.3 6.0 79 80-162 229-309 (1319)
46 PLN00192 aldehyde oxidase 82.5 3.1 6.7E-05 51.0 7.5 84 79-163 233-317 (1344)
47 TIGR02969 mam_aldehyde_ox alde 80.0 3.9 8.4E-05 50.1 7.1 78 80-161 237-316 (1330)
48 COG4630 XdhA Xanthine dehydrog 76.2 5.8 0.00013 40.9 5.9 139 79-229 203-352 (493)
49 COG1319 CoxM Aerobic-type carb 75.4 9.3 0.0002 38.4 7.2 76 79-158 3-81 (284)
50 COG4981 Enoyl reductase domain 74.1 5.6 0.00012 42.9 5.4 81 30-117 110-197 (717)
51 PF03614 Flag1_repress: Repres 57.4 38 0.00082 30.3 6.4 37 83-119 10-47 (165)
52 TIGR00178 monomer_idh isocitra 47.5 78 0.0017 34.9 8.0 131 88-229 312-460 (741)
53 PRK11282 glcE glycolate oxidas 47.1 11 0.00025 39.1 1.8 22 500-521 323-345 (352)
54 PF02601 Exonuc_VII_L: Exonucl 47.0 29 0.00063 35.4 4.9 57 49-112 19-87 (319)
55 KOG4730 D-arabinono-1, 4-lacto 45.3 11 0.00024 39.9 1.4 22 501-522 485-506 (518)
56 COG0351 ThiD Hydroxymethylpyri 43.8 79 0.0017 31.4 7.0 91 47-164 132-225 (263)
57 PRK00286 xseA exodeoxyribonucl 38.2 41 0.00088 36.1 4.5 57 49-112 140-204 (438)
58 COG4359 Uncharacterized conser 35.4 40 0.00088 31.6 3.3 27 91-117 78-104 (220)
59 COG1519 KdtA 3-deoxy-D-manno-o 34.8 2.3E+02 0.0049 30.2 9.1 34 78-111 260-293 (419)
60 KOG3282 Uncharacterized conser 34.3 45 0.00098 31.0 3.4 36 70-107 118-153 (190)
61 PF04472 DUF552: Protein of un 31.6 72 0.0016 24.8 3.8 33 81-135 2-34 (73)
62 cd07033 TPP_PYR_DXS_TK_like Py 28.0 84 0.0018 28.4 4.2 30 80-109 125-154 (156)
63 COG1154 Dxs Deoxyxylulose-5-ph 26.9 3.9E+02 0.0086 29.8 9.5 83 77-164 439-527 (627)
64 PF02779 Transket_pyr: Transke 25.0 1.1E+02 0.0023 28.3 4.4 32 80-111 139-172 (178)
65 TIGR00237 xseA exodeoxyribonuc 24.9 55 0.0012 35.1 2.7 62 49-112 134-199 (432)
66 PF13986 DUF4224: Domain of un 24.8 1.1E+02 0.0024 21.8 3.4 21 93-113 19-39 (47)
67 KOG0523 Transketolase [Carbohy 24.6 3.3E+02 0.0071 30.3 8.3 83 78-165 445-532 (632)
68 COG1570 XseA Exonuclease VII, 23.7 54 0.0012 35.0 2.3 57 49-112 140-205 (440)
69 cd02429 PTH2_like Peptidyl-tRN 23.5 1.5E+02 0.0033 25.5 4.6 34 71-108 52-85 (116)
70 cd06568 GH20_SpHex_like A subg 23.0 79 0.0017 32.6 3.3 23 86-108 72-94 (329)
71 TIGR01676 GLDHase galactonolac 22.9 53 0.0011 36.3 2.1 26 494-522 509-534 (541)
72 cd02742 GH20_hexosaminidase Be 22.1 85 0.0018 31.9 3.3 24 85-108 68-91 (303)
73 PLN02465 L-galactono-1,4-lacto 20.4 59 0.0013 36.2 1.9 28 492-522 537-564 (573)
No 1
>PLN02441 cytokinin dehydrogenase
Probab=100.00 E-value=8.1e-39 Score=340.57 Aligned_cols=207 Identities=21% Similarity=0.241 Sum_probs=178.1
Q ss_pred ceEEcCCCcchHHHHhhcccccCCCCCCCCCCcEEEecCCHHHHHHHHHHHH--HCCCeEEEEeCCCCCCCCccccCCCe
Q 009286 48 KVTYTQNNSSYISILNSLKQNLLYKPPEYGRPQVIVTPFDVSQIQAVLKCAQ--KHDLLVKVRSGGHDHEGLSYLSEVPF 125 (538)
Q Consensus 48 ~~~~~p~~~~y~~~~~~~~~n~r~~~~~~~~p~~vv~P~t~~dv~~~v~~a~--~~~~~v~~~ggGh~~~g~~~~~~~~g 125 (538)
+.+.+ ++..++.+ ...|.......|.+|++|+|++||+++|++|+ +++++|++||+|||+.|.+...+ |
T Consensus 41 ~~v~~-d~~~~~~~------s~d~g~~~~~~P~aVv~P~S~eDVa~iVr~A~~~~~~~~V~~rGgGHS~~G~a~~~~--G 111 (525)
T PLN02441 41 GHLSF-DPVSTASA------SKDFGNLVHSLPAAVLYPSSVEDIASLVRAAYGSSSPLTVAARGHGHSLNGQAQAPG--G 111 (525)
T ss_pred ceEEe-CHHHHHHH------hcCcccccCCCCCEEEeCCCHHHHHHHHHHHhhccCCceEEEECCCcCCCCCccCCC--e
Confidence 44543 34455543 23488777889999999999999999999997 66999999999999998887654 8
Q ss_pred EEEEccCCcc------e-EEcCCCCeEEEcCCCCHHHHHHHHHHhCCCceec-CCCCCcccccccCcCCccCCCccccCc
Q 009286 126 VMIDMINFSQ------I-DVDAEAKSAWVGAGATLGELYYKISEKSKNLAFP-AGICPTVAVGGHLSGGGFGYIMRKYGL 197 (538)
Q Consensus 126 ivIdl~~~~~------i-~id~~~~~v~v~~G~~~~~l~~~l~~~g~~l~~~-~g~~~~vgvgG~~~gGg~g~~~~~~G~ 197 (538)
++|||++||+ + ++|.+..+|+|++|++|.+|.+++.++| ++++ .+.+..++|||.+++||+|..+.+||.
T Consensus 112 ivIdms~Ln~i~~~~~ii~vd~~~~~VtV~aG~~~~dv~~~l~~~G--laP~~~~d~~~~TVGG~ist~G~gg~s~ryG~ 189 (525)
T PLN02441 112 VVVDMRSLRGGVRGPPVIVVSGDGPYVDVSGGELWIDVLKATLKHG--LAPRSWTDYLYLTVGGTLSNAGISGQAFRHGP 189 (525)
T ss_pred EEEECCCCCCcCccCceEEEcCCCCEEEEcCCCCHHHHHHHHHHCC--CccCCccccCceEEeEEcCCCCccccccccCc
Confidence 9999999999 4 7889999999999999999999999987 4433 355578899999999999999999999
Q ss_pred hHHhhheeEEeecCceeee-ccCCCcchhHHhhccCCCCeEEEEEEEEEEEecCCeEEEEEEecchhhhH
Q 009286 198 GADQVIDAHLVDVNGRILD-RKSMGEDLFWAIRGGGAASFGVLVAWKVNLVDVPSIVTVFTVQKTLEQNA 266 (538)
Q Consensus 198 ~~d~v~~~~vV~~~G~i~~-~~~~~~dlf~a~rG~~~g~~Givt~~~~k~~p~~~~~~~~~~~~~~~~~~ 266 (538)
.+|+|+++|||+++|++++ ++.+|+|||||++||+ |+|||||++|+|++|+|+...++.+.+...+.+
T Consensus 190 ~~d~Vl~leVVtadGevv~~s~~~n~DLF~Av~Ggl-G~fGIIT~atlrL~Pap~~v~~~~~~y~~~~~~ 258 (525)
T PLN02441 190 QISNVLELDVVTGKGEVVTCSPTQNSDLFFAVLGGL-GQFGIITRARIALEPAPKRVRWIRVLYSDFSTF 258 (525)
T ss_pred HHHhEEEEEEEeCCceEEEeCCCCChhHHHhhccCC-CCcEEEEEEEEEEEecCCceEEEEEEcCCHHHH
Confidence 9999999999999999998 7778999999999998 899999999999999999777777767644333
No 2
>PLN02805 D-lactate dehydrogenase [cytochrome]
Probab=100.00 E-value=2.5e-34 Score=310.77 Aligned_cols=193 Identities=22% Similarity=0.296 Sum_probs=171.9
Q ss_pred CCCcEEEecCCHHHHHHHHHHHHHCCCeEEEEeCCCCCCCCccccCCCeEEEEccCCcce-EEcCCCCeEEEcCCCCHHH
Q 009286 77 GRPQVIVTPFDVSQIQAVLKCAQKHDLLVKVRSGGHDHEGLSYLSEVPFVMIDMINFSQI-DVDAEAKSAWVGAGATLGE 155 (538)
Q Consensus 77 ~~p~~vv~P~t~~dv~~~v~~a~~~~~~v~~~ggGh~~~g~~~~~~~~givIdl~~~~~i-~id~~~~~v~v~~G~~~~~ 155 (538)
..|.+|++|+|++||+++|++|+++++|+++||||||+.|.+... .++++|||++||+| ++|.++.+|+||||+++.+
T Consensus 132 ~~P~~Vv~P~s~eeV~~ivk~a~~~~ipv~prGgGts~~G~~~~~-~ggivIdl~~mn~I~~id~~~~~vtVeaGv~~~~ 210 (555)
T PLN02805 132 NIPDVVVFPRSEEEVSKIVKSCNKYKVPIVPYGGATSIEGHTLAP-HGGVCIDMSLMKSVKALHVEDMDVVVEPGIGWLE 210 (555)
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHCCCcEEEECCCCCCCCCccCC-CCEEEEEccCCCCeEEEeCCCCEEEEeCCcCHHH
Confidence 479999999999999999999999999999999999999887654 25899999999999 7999999999999999999
Q ss_pred HHHHHHHhCCCceecCCCCCcccccccCcCCccCCCccccCchHHhhheeEEeecCceeee--cc----CCCcchhHHhh
Q 009286 156 LYYKISEKSKNLAFPAGICPTVAVGGHLSGGGFGYIMRKYGLGADQVIDAHLVDVNGRILD--RK----SMGEDLFWAIR 229 (538)
Q Consensus 156 l~~~l~~~g~~l~~~~g~~~~vgvgG~~~gGg~g~~~~~~G~~~d~v~~~~vV~~~G~i~~--~~----~~~~dlf~a~r 229 (538)
|+++|.++| +.++...++.++|||+++++++|..+.+||.++|+|+++|||++||++++ .. ..++||+|+++
T Consensus 211 L~~~L~~~G--l~~p~~p~~~~TIGG~ia~n~~G~~s~~yG~~~d~V~~levVl~dG~iv~~~~~~~k~~~g~dL~~l~~ 288 (555)
T PLN02805 211 LNEYLEPYG--LFFPLDPGPGATIGGMCATRCSGSLAVRYGTMRDNVISLKVVLPNGDVVKTASRARKSAAGYDLTRLVI 288 (555)
T ss_pred HHHHHHHcC--CEeCCCCccccChhhHhhCCCcccccCccccHHHhEEEEEEEcCCceEEEecCccccCCCCccHHHHhc
Confidence 999999987 56777777788999999999999999999999999999999999999995 11 24689999999
Q ss_pred ccCCCCeEEEEEEEEEEEecCCeEEEEEEecchhhhHHHHHHHH
Q 009286 230 GGGAASFGVLVAWKVNLVDVPSIVTVFTVQKTLEQNASQIHHKW 273 (538)
Q Consensus 230 G~~~g~~Givt~~~~k~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (538)
|++ |+|||||+++||++|.|+......+.|+..+++.+++..+
T Consensus 289 Gse-GtLGIIT~~tlrl~p~P~~~~~~~~~f~~~~~a~~av~~i 331 (555)
T PLN02805 289 GSE-GTLGVITEVTLRLQKIPQHSVVAMCNFPTIKDAADVAIAT 331 (555)
T ss_pred cCC-CceEEEEEEEEEeecCCcceEEEEEEcCCHHHHHHHHHHH
Confidence 998 9999999999999999998777777787655555555443
No 3
>TIGR01678 FAD_lactone_ox sugar 1,4-lactone oxidases. This model represents a family of at least two different sugar 1,4 lactone oxidases, both involved in synthesizing ascorbic acid or a derivative. These include L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae. Members are proposed to have the cofactor FAD covalently bound at a site specified by Prosite motif PS00862; OX2_COVAL_FAD; 1.
Probab=100.00 E-value=3.8e-33 Score=295.09 Aligned_cols=195 Identities=23% Similarity=0.356 Sum_probs=171.3
Q ss_pred CCCCCCCCCcEEEecCCHHHHHHHHHHHHHCCCeEEEEeCCCCCCCCccccCCCeEEEEccCCcce-EEcCCCCeEEEcC
Q 009286 71 YKPPEYGRPQVIVTPFDVSQIQAVLKCAQKHDLLVKVRSGGHDHEGLSYLSEVPFVMIDMINFSQI-DVDAEAKSAWVGA 149 (538)
Q Consensus 71 ~~~~~~~~p~~vv~P~t~~dv~~~v~~a~~~~~~v~~~ggGh~~~g~~~~~~~~givIdl~~~~~i-~id~~~~~v~v~~ 149 (538)
|+.+....|.+|++|+|++||+++|++|++++++++++|+|||+.+.... + +++|||++||+| ++|.++++|+|+|
T Consensus 7 W~~~~~~~p~~v~~P~s~eev~~iv~~A~~~~~~v~v~G~GhS~s~~~~~-~--gvvIdl~~l~~i~~id~~~~~vtV~a 83 (438)
T TIGR01678 7 WAKTYSASPEVYYQPTSVEEVREVLALAREQKKKVKVVGGGHSPSDIACT-D--GFLIHLDKMNKVLQFDKEKKQITVEA 83 (438)
T ss_pred CCCcccCCCCEEEecCCHHHHHHHHHHHHHCCCeEEEECCCCCCCCCccC-C--eEEEEhhhcCCceEEcCCCCEEEEcC
Confidence 88888889999999999999999999999999999999999999876653 3 799999999998 9999999999999
Q ss_pred CCCHHHHHHHHHHhCCCceec-CCCCCcccccccCcCCccCCCccccCchHHhhheeEEeecCceeee-ccCCCcchhHH
Q 009286 150 GATLGELYYKISEKSKNLAFP-AGICPTVAVGGHLSGGGFGYIMRKYGLGADQVIDAHLVDVNGRILD-RKSMGEDLFWA 227 (538)
Q Consensus 150 G~~~~~l~~~l~~~g~~l~~~-~g~~~~vgvgG~~~gGg~g~~~~~~G~~~d~v~~~~vV~~~G~i~~-~~~~~~dlf~a 227 (538)
|+++.+|.+.|.++| ++++ .|.++.++|||++++|+||. +.+||..+|+|+++++|++||++++ +..+++||||+
T Consensus 84 G~~l~~L~~~L~~~G--l~l~~~g~~~~~TvGG~iatg~hG~-~~~~G~~~d~V~~l~vV~~~G~i~~~s~~~~~dlf~a 160 (438)
T TIGR01678 84 GIRLYQLHEQLDEHG--YSMSNLGSISEVSVAGIISTGTHGS-SIKHGILATQVVALTIMTADGEVLECSEERNADVFQA 160 (438)
T ss_pred CCCHHHHHHHHHHcC--CEecCCCCCCCceeeehhcCCCCCC-ccccCcHHhhEEEEEEEcCCCcEEEeCCCCChhHHHH
Confidence 999999999999998 4555 57888999999999999997 6899999999999999999999997 66678999999
Q ss_pred hhccCCCCeEEEEEEEEEEEecCCeEEEEEEecchhhhHHHHHHHHHHHH
Q 009286 228 IRGGGAASFGVLVAWKVNLVDVPSIVTVFTVQKTLEQNASQIHHKWQQIA 277 (538)
Q Consensus 228 ~rG~~~g~~Givt~~~~k~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (538)
.+|+. |+|||||++|||++|........ .. ....++++.|++..
T Consensus 161 ~~~~~-G~lGIIt~vtl~l~p~~~l~~~~--~~---~~~~~~~~~~~~~~ 204 (438)
T TIGR01678 161 ARVSL-GCLGIIVTVTIQVVPQFHLQETS--FV---STLKELLDNWDSHW 204 (438)
T ss_pred HhcCC-CceEeeEEEEEEEEeccceEEEE--ec---CCHHHHHHHHHHHh
Confidence 99998 89999999999999987644332 11 22356677776654
No 4
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=100.00 E-value=2.6e-33 Score=301.26 Aligned_cols=197 Identities=22% Similarity=0.291 Sum_probs=169.9
Q ss_pred CCCCCcEEEecCCHHHHHHHHHHHHHCCCeEEEEeCCCCCCCCccccCCCeEEEEccCCcce-EEcCCCCeEEEcCCCCH
Q 009286 75 EYGRPQVIVTPFDVSQIQAVLKCAQKHDLLVKVRSGGHDHEGLSYLSEVPFVMIDMINFSQI-DVDAEAKSAWVGAGATL 153 (538)
Q Consensus 75 ~~~~p~~vv~P~t~~dv~~~v~~a~~~~~~v~~~ggGh~~~g~~~~~~~~givIdl~~~~~i-~id~~~~~v~v~~G~~~ 153 (538)
....|.+|++|+|++||+++|++|+++++|+++||+||++.|.+.... ++++|||++||+| ++|+++++|+||||+++
T Consensus 52 ~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~rG~Gt~~~gg~~~~~-~gividl~~ln~I~~id~~~~~v~VeaGv~~ 130 (499)
T PRK11230 52 YRTRPLLVVLPKQMEQVQALLAVCHRLRVPVVARGAGTGLSGGALPLE-KGVLLVMARFNRILDINPVGRRARVQPGVRN 130 (499)
T ss_pred cCCCCCEEEeeCCHHHHHHHHHHHHHcCCeEEEECCCcCcCCCcccCC-CcEEEEcccCCCceEEcCCCCEEEEcCCccH
Confidence 355899999999999999999999999999999999999987665432 4899999999998 99999999999999999
Q ss_pred HHHHHHHHHhCCCceecCCCCCcccccccCcCCccCCCccccCchHHhhheeEEeecCceeeecc-----CCCcchhHHh
Q 009286 154 GELYYKISEKSKNLAFPAGICPTVAVGGHLSGGGFGYIMRKYGLGADQVIDAHLVDVNGRILDRK-----SMGEDLFWAI 228 (538)
Q Consensus 154 ~~l~~~l~~~g~~l~~~~g~~~~vgvgG~~~gGg~g~~~~~~G~~~d~v~~~~vV~~~G~i~~~~-----~~~~dlf~a~ 228 (538)
.+|.++|.++|+.+...+++...++|||++++++.|+.+.+||.+.|+|+++|||++||++++.. ..++||+|++
T Consensus 131 ~~L~~~l~~~Gl~~~~~p~s~~~~tvGG~ia~nagG~~~~~yG~~~d~v~~levVl~~G~i~~~~~~~~~~~g~dl~~l~ 210 (499)
T PRK11230 131 LAISQAAAPHGLYYAPDPSSQIACSIGGNVAENAGGVHCLKYGLTVHNLLKVEILTLDGEALTLGSDALDSPGFDLLALF 210 (499)
T ss_pred HHHHHHHHHcCCeeCCCCCccccceEcceeccCCCCccceeeCChhhheeEEEEEcCCCcEEEeCCccCCCCccchHhhh
Confidence 99999999998533333445556889999999999999999999999999999999999999721 3478999999
Q ss_pred hccCCCCeEEEEEEEEEEEecCCeEEEEEEecchhhhHHHHHHHH
Q 009286 229 RGGGAASFGVLVAWKVNLVDVPSIVTVFTVQKTLEQNASQIHHKW 273 (538)
Q Consensus 229 rG~~~g~~Givt~~~~k~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (538)
+|++ |+|||||++|||++|.|+....+.+.|...+++.+++..+
T Consensus 211 ~Gs~-GtlGIIt~atlkl~p~p~~~~~~~~~f~~~~~a~~~~~~~ 254 (499)
T PRK11230 211 TGSE-GMLGVVTEVTVKLLPKPPVARVLLASFDSVEKAGLAVGDI 254 (499)
T ss_pred ccCC-CccEEEEEEEEEEEcCCcceEEEEEECCCHHHHHHHHHHH
Confidence 9998 9999999999999999998777777776555544444433
No 5
>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase. This model represents an uncharacterized plant-specific family of FAD-dependent oxidoreductases. At least seven distinct members are found in Arabidopsis thaliana. The family shows considerable sequence similarity to three different enzymes of ascorbic acid biosynthesis: L-galactono-1,4-lactone dehydrogenase (EC 1.3.2.3) from higher plants, D-arabinono-1,4-lactone oxidase (EC 1.1.3.37 from Saccharomyces cerevisiae, and L-gulonolactone oxidase (EC 1.1.3.8) from mouse, as well as to a bacterial sorbitol oxidase. The class of compound acted on by members of this family is unknown.
Probab=100.00 E-value=6.2e-33 Score=299.20 Aligned_cols=203 Identities=20% Similarity=0.220 Sum_probs=173.5
Q ss_pred chhHHhhhhcCCCCCCCcceEEcCCCcchHHHHhhcccccCCCCCCCCCCcEEEecCCHHHHHHHHHHHHHCCCeEEEEe
Q 009286 30 NEKFLQCLSVHSERTFISKVTYTQNNSSYISILNSLKQNLLYKPPEYGRPQVIVTPFDVSQIQAVLKCAQKHDLLVKVRS 109 (538)
Q Consensus 30 ~~~~~~c~~~~~~~~~~~~~~~~p~~~~y~~~~~~~~~n~r~~~~~~~~p~~vv~P~t~~dv~~~v~~a~~~~~~v~~~g 109 (538)
++++.+|.+.. +++.+. +.|.. |+.+....|.+|++|+|++||+++|++|+++++||+++|
T Consensus 2 ~~~~~~~~~~~------~~~~~~---~~w~n----------Wag~~~~~p~~vv~P~s~eeV~~iV~~A~~~g~~v~v~G 62 (557)
T TIGR01677 2 PDDPVRCVSGG------ANCTVS---NAYGA----------FPDRSTCRAANVAYPKTEAELVSVVAAATAAGRKMKVVT 62 (557)
T ss_pred CCCCeecccCC------CCceee---cchhh----------cCCcccCCCCEEEecCCHHHHHHHHHHHHHCCCeEEEEe
Confidence 45577886432 467665 56654 999999999999999999999999999999999999996
Q ss_pred -CCCCCCCCccccC-CCeEEEEccCCcce-EEcCCCCeEEEcCCCCHHHHHHHHHHhCCCceecCC-CCCcccccccCcC
Q 009286 110 -GGHDHEGLSYLSE-VPFVMIDMINFSQI-DVDAEAKSAWVGAGATLGELYYKISEKSKNLAFPAG-ICPTVAVGGHLSG 185 (538)
Q Consensus 110 -gGh~~~g~~~~~~-~~givIdl~~~~~i-~id~~~~~v~v~~G~~~~~l~~~l~~~g~~l~~~~g-~~~~vgvgG~~~g 185 (538)
+||++.+.+...+ +++++|||++||+| ++|.++++|+|++|+++.+|.+.|.++| ++++.+ .+..++|||.+++
T Consensus 63 G~gHs~~~~a~t~~~~ggvvIdL~~Ln~il~iD~~~~tVtV~AG~~l~~L~~~L~~~G--lal~~~~~~~~~TVGGaiat 140 (557)
T TIGR01677 63 RYSHSIPKLACPDGSDGALLISTKRLNHVVAVDATAMTVTVESGMSLRELIVEAEKAG--LALPYAPYWWGLTVGGMMGT 140 (557)
T ss_pred CCCCCcCcccccCCCCCEEEEEcccCCCCEEEeCCCCEEEECCCCcHHHHHHHHHHcC--CEeccCCCCCCeEeeEhhhC
Confidence 6999887654432 23699999999995 9999999999999999999999999988 556553 4567899999999
Q ss_pred CccCCCc-cccCchHHhhheeEEeecCc------eeee-ccCCCcchhHHhhccCCCCeEEEEEEEEEEEecCCeEE
Q 009286 186 GGFGYIM-RKYGLGADQVIDAHLVDVNG------RILD-RKSMGEDLFWAIRGGGAASFGVLVAWKVNLVDVPSIVT 254 (538)
Q Consensus 186 Gg~g~~~-~~~G~~~d~v~~~~vV~~~G------~i~~-~~~~~~dlf~a~rG~~~g~~Givt~~~~k~~p~~~~~~ 254 (538)
|+||... +.+|..+|+|++++||++|| ++++ +..+++|||||+|||+ |+|||||++|||++|.+....
T Consensus 141 GthGs~~~~~~G~l~d~V~~l~vV~a~G~a~G~~~v~~~s~~~~~dLf~a~rgsl-G~lGVVtevTL~~~P~~~~~~ 216 (557)
T TIGR01677 141 GAHGSSLWGKGSAVHDYVVGIRLVVPASAAEGFAKVRILSEGDTPNEFNAAKVSL-GVLGVISQVTLALQPMFKRSV 216 (557)
T ss_pred CCCCccccccccchhheEEEEEEEeCCCcccCcceEEEeCCCCCHHHHHhhccCC-CccEeeeEEEEEEEccccceE
Confidence 9999866 68899999999999999998 7776 6667899999999998 999999999999999877433
No 6
>COG0277 GlcD FAD/FMN-containing dehydrogenases [Energy production and conversion]
Probab=100.00 E-value=2.1e-32 Score=294.38 Aligned_cols=186 Identities=25% Similarity=0.357 Sum_probs=164.8
Q ss_pred CCCCCcEEEecCCHHHHHHHHHHHHHCCCeEEEEeCCCCCCCCccccCCCeEEEEccCCcce-EEcCCCCeEEEcCCCCH
Q 009286 75 EYGRPQVIVTPFDVSQIQAVLKCAQKHDLLVKVRSGGHDHEGLSYLSEVPFVMIDMINFSQI-DVDAEAKSAWVGAGATL 153 (538)
Q Consensus 75 ~~~~p~~vv~P~t~~dv~~~v~~a~~~~~~v~~~ggGh~~~g~~~~~~~~givIdl~~~~~i-~id~~~~~v~v~~G~~~ 153 (538)
....|.+|+.|+|++||+++|++|+++++||++||+|||+.|.+... . +++|||++||+| ++|+++++|+|+||+++
T Consensus 28 ~~~~p~~v~~p~s~~eV~~iv~~a~~~~~~v~prG~gts~~g~~~~~-~-gvvl~l~~mn~i~~id~~~~~~~v~aGv~l 105 (459)
T COG0277 28 YRGLPLAVVFPKSEEEVAAILRLANENGIPVVPRGGGTSLSGGAVPD-G-GVVLDLSRLNRILEIDPEDGTATVQAGVTL 105 (459)
T ss_pred hcCCCCEEEccCCHHHHHHHHHHHHHcCCeEEEECCCCCccccccCC-C-cEEEEchhhcchhccCcCCCEEEEcCCccH
Confidence 34589999999999999999999999999999999999999888766 2 899999999999 89999999999999999
Q ss_pred HHHHHHHHHhCCCceecCCCCCcccccccCcCCccCCCccccCchHHhhheeEEeecCceeee--c----cCCCcchhHH
Q 009286 154 GELYYKISEKSKNLAFPAGICPTVAVGGHLSGGGFGYIMRKYGLGADQVIDAHLVDVNGRILD--R----KSMGEDLFWA 227 (538)
Q Consensus 154 ~~l~~~l~~~g~~l~~~~g~~~~vgvgG~~~gGg~g~~~~~~G~~~d~v~~~~vV~~~G~i~~--~----~~~~~dlf~a 227 (538)
.+|.++|.++|+.+.+.+++...++|||+++++++|..+.+||.+.|+|+++++|++||++++ . +..+.||+++
T Consensus 106 ~~l~~~l~~~G~~~p~~p~s~~~~tIGG~ia~~~~G~~~~~yG~~~d~v~~l~vV~~dG~i~~~~~~~~k~~~g~dl~~l 185 (459)
T COG0277 106 EDLEKALAPHGLFLPVDPSSSGTATIGGNIATNAGGLRSLRYGLTRDNVLGLRVVLPDGEILRLGRKLRKDNAGYDLTAL 185 (459)
T ss_pred HHHHHHHHHcCCccCCCccccccceEccchhcCCCCccceecccHHHheeEEEEEcCCceehhhcCcccCCCCCCCHHHh
Confidence 999999999985544444444589999999999999999999999999999999999999996 2 2456899999
Q ss_pred hhccCCCCeEEEEEEEEEEEecCCeEEEEEEecchh
Q 009286 228 IRGGGAASFGVLVAWKVNLVDVPSIVTVFTVQKTLE 263 (538)
Q Consensus 228 ~rG~~~g~~Givt~~~~k~~p~~~~~~~~~~~~~~~ 263 (538)
..|+. |+|||||++|+|++|.|+........+...
T Consensus 186 ~iGs~-GtlGiit~~tl~l~p~~~~~~~~~~~~~~~ 220 (459)
T COG0277 186 FVGSE-GTLGIITEATLKLLPLPETKATAVAGFPSI 220 (459)
T ss_pred cccCC-ccceEEEEEEEEeccCCchheEEEEeCCCH
Confidence 99988 999999999999999988766655555443
No 7
>TIGR01679 bact_FAD_ox FAD-linked oxidoreductase. This model represents a family of bacterial oxidoreductases with covalently linked FAD, closely related to two different eukaryotic oxidases, L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae.
Probab=100.00 E-value=1.8e-31 Score=282.02 Aligned_cols=175 Identities=23% Similarity=0.362 Sum_probs=155.9
Q ss_pred CCCCCCCCCcEEEecCCHHHHHHHHHHHHHCCCeEEEEeCCCCCCCCccccCCCeEEEEccCCcce-EEcCCCCeEEEcC
Q 009286 71 YKPPEYGRPQVIVTPFDVSQIQAVLKCAQKHDLLVKVRSGGHDHEGLSYLSEVPFVMIDMINFSQI-DVDAEAKSAWVGA 149 (538)
Q Consensus 71 ~~~~~~~~p~~vv~P~t~~dv~~~v~~a~~~~~~v~~~ggGh~~~g~~~~~~~~givIdl~~~~~i-~id~~~~~v~v~~ 149 (538)
|+......|.+|++|+|++||+++|++|++ +++++|+|||+.+.+.. + +++|||++||+| ++|+++++|+|||
T Consensus 4 W~~~~~~~p~~v~~P~s~~ev~~~v~~a~~---~v~~~G~Ghs~~~~~~~-~--g~~idl~~l~~i~~~d~~~~~v~v~a 77 (419)
T TIGR01679 4 WSGEQVAAPSAIVRPTDEGELADVIAQAAK---PVRAVGSGHSFTDLACT-D--GTMISLTGLQGVVDVDQPTGLATVEA 77 (419)
T ss_pred CCCCccCCCCeEECCCCHHHHHHHHHHhCC---CEEEEeCCCCCCCcccC-C--CEEEEhhHcCCceeecCCCCEEEEcC
Confidence 888888899999999999999999999974 79999999999876543 3 799999999998 9999999999999
Q ss_pred CCCHHHHHHHHHHhCCCceecCCCCCcccccccCcCCccCCCccccCchHHhhheeEEeecCceeee-ccCCCcchhHHh
Q 009286 150 GATLGELYYKISEKSKNLAFPAGICPTVAVGGHLSGGGFGYIMRKYGLGADQVIDAHLVDVNGRILD-RKSMGEDLFWAI 228 (538)
Q Consensus 150 G~~~~~l~~~l~~~g~~l~~~~g~~~~vgvgG~~~gGg~g~~~~~~G~~~d~v~~~~vV~~~G~i~~-~~~~~~dlf~a~ 228 (538)
|+++.+|.+.|.++|+.+.. .|.+..++|||.+++|+||. +..||..+|+|++++||++||++++ ++.+++|||||+
T Consensus 78 G~~l~~l~~~L~~~G~~l~~-~~~~~~~tvGG~ia~~~hG~-g~~~G~~~d~V~~l~vV~a~G~v~~~~~~~~~dLf~a~ 155 (419)
T TIGR01679 78 GTRLGALGPQLAQRGLGLEN-QGDIDPQSIGGALGTATHGT-GVRFQALHARIVSLRLVTAGGKVLDLSEGDDQDMYLAA 155 (419)
T ss_pred CCCHHHHHHHHHHcCCcccc-CCCCCCceeccceecCCCCC-CccCCchhhhEEEEEEEcCCCCEEEEcCCCCHHHHHHH
Confidence 99999999999999854332 35556688999999999997 4689999999999999999999998 667789999999
Q ss_pred hccCCCCeEEEEEEEEEEEecCCeEE
Q 009286 229 RGGGAASFGVLVAWKVNLVDVPSIVT 254 (538)
Q Consensus 229 rG~~~g~~Givt~~~~k~~p~~~~~~ 254 (538)
|||+ |+|||||++|||++|.++...
T Consensus 156 ~g~~-G~lGVIt~vtl~~~p~~~~~~ 180 (419)
T TIGR01679 156 RVSL-GALGVISQVTLQTVALFRLRR 180 (419)
T ss_pred HhCC-CceEEEEEEEEEeecceEeEE
Confidence 9998 999999999999999886443
No 8
>TIGR01676 GLDHase galactonolactone dehydrogenase. This model represents L-Galactono-gamma-lactone dehydrogenase (EC 1.3.2.3). This enzyme catalyzes the final step in ascorbic acid biosynthesis in higher plants. This protein is homologous to ascorbic acid biosynthesis enzymes of other species: L-gulono-gamma-lactone oxidase in rat and L-galactono-gamma-lactone oxidase in yeast. All three covalently bind the cofactor FAD.
Probab=100.00 E-value=2.7e-32 Score=290.31 Aligned_cols=195 Identities=19% Similarity=0.278 Sum_probs=170.6
Q ss_pred CCCCCCCCCcEEEecCCHHHHHHHHHHHHHCCCeEEEEeCCCCCCCCccccCCCeEEEEccCCcce-EEcCCCCeEEEcC
Q 009286 71 YKPPEYGRPQVIVTPFDVSQIQAVLKCAQKHDLLVKVRSGGHDHEGLSYLSEVPFVMIDMINFSQI-DVDAEAKSAWVGA 149 (538)
Q Consensus 71 ~~~~~~~~p~~vv~P~t~~dv~~~v~~a~~~~~~v~~~ggGh~~~g~~~~~~~~givIdl~~~~~i-~id~~~~~v~v~~ 149 (538)
|+.+..+.|..+++|+|++||+++|++|++++++|+++|+|||+.+.+... +.+|||++||+| ++|.++++|+|+|
T Consensus 54 Wsg~~~~~p~~~~~P~s~eEV~~iV~~A~~~g~~Vr~~GsGhS~sg~a~t~---g~lldL~~ln~Vl~vD~~~~tVtV~A 130 (541)
T TIGR01676 54 WSGTHEVLTRTFHQPEAIEELEGIVKQANEKKARIRPVGSGLSPNGIGLSR---AGMVNLALMDKVLEVDEEKKRVRVQA 130 (541)
T ss_pred cCCccccCcceEECCCCHHHHHHHHHHHHHcCCcEEEECCCcCCCCcccCC---CeEEEhhhCCCCEEEcCCCCEEEEcC
Confidence 999999999999999999999999999999999999999999999887754 357999999998 9999999999999
Q ss_pred CCCHHHHHHHHHHhCCCceec-CCCCCcccccccCcCCccCCCccccCchHHhhheeEEeecCceeee-ccCCCcchhHH
Q 009286 150 GATLGELYYKISEKSKNLAFP-AGICPTVAVGGHLSGGGFGYIMRKYGLGADQVIDAHLVDVNGRILD-RKSMGEDLFWA 227 (538)
Q Consensus 150 G~~~~~l~~~l~~~g~~l~~~-~g~~~~vgvgG~~~gGg~g~~~~~~G~~~d~v~~~~vV~~~G~i~~-~~~~~~dlf~a 227 (538)
|+++.+|.+.|.++| ++++ .|.++.++|||++++|+||.. .+||..+|+|++++||+++|+++. +..+++|||||
T Consensus 131 G~~l~~L~~~L~~~G--lal~n~gsi~~~TIGGaiatgtHGtg-~~~G~l~d~V~~l~lVta~G~vv~~s~~~~pdLF~A 207 (541)
T TIGR01676 131 GIRVQQLVDAIKEYG--ITLQNFASIREQQIGGIIQVGAHGTG-AKLPPIDEQVIAMKLVTPAKGTIEISKDKDPELFFL 207 (541)
T ss_pred CCCHHHHHHHHHHcC--CEeccCCCCCCceEccccccCCcCCC-CCCCCHHHhEEEEEEEECCCCEEEECCCCCHHHHHH
Confidence 999999999999998 4554 477888999999999999985 579999999999999999999997 66779999999
Q ss_pred hhccCCCCeEEEEEEEEEEEecCCeEEEEEEecchhhhHHHHHHHHHHHH
Q 009286 228 IRGGGAASFGVLVAWKVNLVDVPSIVTVFTVQKTLEQNASQIHHKWQQIA 277 (538)
Q Consensus 228 ~rG~~~g~~Givt~~~~k~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (538)
+|||. |+|||||++|||++|.+..... ....+ ..++++.+.++.
T Consensus 208 argsl-G~LGVItevTLr~~Pa~~l~~~-~~~~~----~~e~l~~~~~~~ 251 (541)
T TIGR01676 208 ARCGL-GGLGVVAEVTLQCVERQELVEH-TFISN----MKDIKKNHKKFL 251 (541)
T ss_pred HhcCC-CceEeEEEEEEEEEeccceeEE-EEecC----HHHHHHHHHHHH
Confidence 99998 8999999999999999874332 11222 345566666544
No 9
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=100.00 E-value=7.2e-32 Score=285.35 Aligned_cols=190 Identities=21% Similarity=0.254 Sum_probs=163.8
Q ss_pred EEecCCHHHHHHHHHHHHHCCCeEEEEeCCCCCCCCccccCCCeEEEEccCCcce-EEcCCCCeEEEcCCCCHHHHHHHH
Q 009286 82 IVTPFDVSQIQAVLKCAQKHDLLVKVRSGGHDHEGLSYLSEVPFVMIDMINFSQI-DVDAEAKSAWVGAGATLGELYYKI 160 (538)
Q Consensus 82 vv~P~t~~dv~~~v~~a~~~~~~v~~~ggGh~~~g~~~~~~~~givIdl~~~~~i-~id~~~~~v~v~~G~~~~~l~~~l 160 (538)
|++|+|++||+++|++|+++++|+++||+|||+.|.+...+ ++++|||++||+| ++|+++.+|+||||+++.+|.++|
T Consensus 1 Vv~P~s~eev~~iv~~a~~~~i~v~~~G~Gt~~~g~~~~~~-~~vvidl~~mn~i~~id~~~~~v~veaGv~~~~l~~~l 79 (413)
T TIGR00387 1 VVFPKNTEQVARILKLCHEHRIPIVPRGAGTGLSGGALPEE-GGLVLVFKHMNKILEIDVVNLTAVVQPGVRNLELEQAV 79 (413)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCcEEEECCCCCCCCCccCCC-CeEEEEhHHcCceeEEcCCCCEEEEcCCccHHHHHHHH
Confidence 57899999999999999999999999999999987666543 4899999999998 999999999999999999999999
Q ss_pred HHhCCCceecCCCCCcccccccCcCCccCCCccccCchHHhhheeEEeecCceeee-c-----cCCCcchhHHhhccCCC
Q 009286 161 SEKSKNLAFPAGICPTVAVGGHLSGGGFGYIMRKYGLGADQVIDAHLVDVNGRILD-R-----KSMGEDLFWAIRGGGAA 234 (538)
Q Consensus 161 ~~~g~~l~~~~g~~~~vgvgG~~~gGg~g~~~~~~G~~~d~v~~~~vV~~~G~i~~-~-----~~~~~dlf~a~rG~~~g 234 (538)
.++|+.+.+.+++....+|||++++++.|..+.+||.+.|+|++++||++||++++ . ...++||+|.++|+. |
T Consensus 80 ~~~gl~~~~~p~s~~~~tiGG~ia~na~G~~~~~yG~~~d~v~~l~vV~~~G~~~~~~~~~~~~~~g~dl~~l~~Gs~-G 158 (413)
T TIGR00387 80 EEHNLFYPPDPSSQISSTIGGNIAENAGGMRGLKYGTTVDYVLGLEVVTADGEILRIGGKTAKDVAGYDLTGLFVGSE-G 158 (413)
T ss_pred HHcCCeeCCCCcccccceehhhhhcCCCCCcceeeccHHhheeeEEEEeCCCCEEEeCCcccCCCCCCChhhhcccCC-c
Confidence 99985333334445567899999999999999999999999999999999999996 2 234689999999998 8
Q ss_pred CeEEEEEEEEEEEecCCeEEEEEEecchhhhHHHHHHHH
Q 009286 235 SFGVLVAWKVNLVDVPSIVTVFTVQKTLEQNASQIHHKW 273 (538)
Q Consensus 235 ~~Givt~~~~k~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (538)
+|||||+++||++|.|+....+.+.|...+++.+++..+
T Consensus 159 tlGiit~~~lkl~p~p~~~~~~~~~f~~~~~~~~~~~~~ 197 (413)
T TIGR00387 159 TLGIVTEATLKLLPKPENIVVALAFFDSIEKAMQAVYDI 197 (413)
T ss_pred cceEEEEEEEEeecCCCccEEEEEECCCHHHHHHHHHHH
Confidence 999999999999999997777777776555554554443
No 10
>KOG1231 consensus Proteins containing the FAD binding domain [Energy production and conversion]
Probab=99.97 E-value=1.3e-30 Score=261.98 Aligned_cols=175 Identities=25% Similarity=0.345 Sum_probs=152.6
Q ss_pred CCCCCCcEEEecCCHHHHHHHHHHHHHC--CCeEEEEeCCCCCCCCccccCCCeEEEEcc---CCcce-EEcCCCCeEEE
Q 009286 74 PEYGRPQVIVTPFDVSQIQAVLKCAQKH--DLLVKVRSGGHDHEGLSYLSEVPFVMIDMI---NFSQI-DVDAEAKSAWV 147 (538)
Q Consensus 74 ~~~~~p~~vv~P~t~~dv~~~v~~a~~~--~~~v~~~ggGh~~~g~~~~~~~~givIdl~---~~~~i-~id~~~~~v~v 147 (538)
..+..|.+|..|+|+|||++++|.|... ++||.+||+|||..|.+.... +|++|.|. .|+++ .+..++..|.|
T Consensus 59 ~~~~~P~aVL~P~S~edVs~ilk~~~~~~s~~pVaarG~GhSl~Gqa~a~~-~GvvV~m~~~~~~~~~~~~~~~~~yvdV 137 (505)
T KOG1231|consen 59 RTQLPPLAVLFPSSVEDVSKILKHCNDYGSNFPVAARGGGHSLEGQALATR-GGVVVCMDSSLLMKDVPVLVVDDLYVDV 137 (505)
T ss_pred cCCCCCeeEEcCCCHHHHHHHHHHHhccCCcceeeccCCcccccCccccCC-CCeEEEEehhhccCCCceeecccceEEe
Confidence 3455999999999999999999999999 899999999999999988732 48666664 45666 66777799999
Q ss_pred cCCCCHHHHHHHHHHhCCCceecCCCCCcccccccCcCCccCCCccccCchHHhhheeEEeecCceeee-ccCCCcchhH
Q 009286 148 GAGATLGELYYKISEKSKNLAFPAGICPTVAVGGHLSGGGFGYIMRKYGLGADQVIDAHLVDVNGRILD-RKSMGEDLFW 226 (538)
Q Consensus 148 ~~G~~~~~l~~~l~~~g~~l~~~~g~~~~vgvgG~~~gGg~g~~~~~~G~~~d~v~~~~vV~~~G~i~~-~~~~~~dlf~ 226 (538)
.||..|-+|.+++.++|..-.++....+ .+|||.++.+|+|.++.+||...+||++++||+++|++++ ++..|++||+
T Consensus 138 ~~g~~Widll~~t~e~GL~p~swtDyl~-ltVGGtlsnagiggqafRyGpqi~NV~~LdVVtgkGeiv~cs~r~n~~lf~ 216 (505)
T KOG1231|consen 138 SAGTLWIDLLDYTLEYGLSPFSWTDYLP-LTVGGTLSNAGIGGQAFRYGPQISNVIELDVVTGKGEIVTCSKRANSNLFF 216 (505)
T ss_pred eCChhHHHHHHHHHHcCCCccCcCCccc-eeecceeccCccccceeeccchhhceEEEEEEcCCCcEEecccccCceeee
Confidence 9999999999999999842122332223 8899999999999999999999999999999999999998 7778999999
Q ss_pred HhhccCCCCeEEEEEEEEEEEecCC
Q 009286 227 AIRGGGAASFGVLVAWKVNLVDVPS 251 (538)
Q Consensus 227 a~rG~~~g~~Givt~~~~k~~p~~~ 251 (538)
++.||. |.|||||+++++++|+|+
T Consensus 217 ~vlGgl-GqfGIITrArI~le~aP~ 240 (505)
T KOG1231|consen 217 LVLGGL-GQFGIITRARIKLEPAPK 240 (505)
T ss_pred eeeccC-cceeeEEEEEEEeccCCc
Confidence 999999 999999999999999994
No 11
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional
Probab=99.97 E-value=1.4e-29 Score=259.06 Aligned_cols=170 Identities=20% Similarity=0.247 Sum_probs=147.7
Q ss_pred CHHHHHHHHHHHHHCCCeEEEEeCCC-CCCCCccccCCCeEEEEccCCcce-EEcCCCCeEEEcCCCCHHHHHHHHHHhC
Q 009286 87 DVSQIQAVLKCAQKHDLLVKVRSGGH-DHEGLSYLSEVPFVMIDMINFSQI-DVDAEAKSAWVGAGATLGELYYKISEKS 164 (538)
Q Consensus 87 t~~dv~~~v~~a~~~~~~v~~~ggGh-~~~g~~~~~~~~givIdl~~~~~i-~id~~~~~v~v~~G~~~~~l~~~l~~~g 164 (538)
.++||+++|++|+++++|++++|||| ++.+... . +++|||++||+| ++|+++.+|+|++|+++.||.++|.++|
T Consensus 3 ~~~ev~~~v~~A~~~~~~v~~~GgGt~~~~g~~~--~--~~vldl~~ln~Ile~d~~~~~vtV~AG~~l~el~~~L~~~G 78 (352)
T PRK11282 3 ISAALLERVRQAAADGTPLRIRGGGSKDFYGRAL--A--GEVLDTRAHRGIVSYDPTELVITARAGTPLAELEAALAEAG 78 (352)
T ss_pred hHHHHHHHHHHHHHCCCeEEEECCCCCCCCCCCC--C--CeEEEcccCCCcEEEcCCCCEEEECCCCCHHHHHHHHHHcC
Confidence 47999999999999999999999997 5556532 2 579999999998 9999999999999999999999999998
Q ss_pred CCceecCC-CCCcccccccCcCCccCCCccccCchHHhhheeEEeecCceeeec------cCCCcchhHHhhccCCCCeE
Q 009286 165 KNLAFPAG-ICPTVAVGGHLSGGGFGYIMRKYGLGADQVIDAHLVDVNGRILDR------KSMGEDLFWAIRGGGAASFG 237 (538)
Q Consensus 165 ~~l~~~~g-~~~~vgvgG~~~gGg~g~~~~~~G~~~d~v~~~~vV~~~G~i~~~------~~~~~dlf~a~rG~~~g~~G 237 (538)
..+++.++ .+...+|||++++|++|..+.+||..+|+|+++++|++||++++. +..++||||+++|+. |+||
T Consensus 79 ~~lp~~p~~~~~~~TIGG~iatg~~G~~~~~yG~~~D~Vlg~~vV~~~Gei~~~gg~v~kn~~G~DL~~l~~Gs~-GtLG 157 (352)
T PRK11282 79 QMLPFEPPHFGGGATLGGMVAAGLSGPRRPWAGAVRDFVLGTRLINGRGEHLRFGGQVMKNVAGYDVSRLMAGSL-GTLG 157 (352)
T ss_pred CeeCCCCCCcCCCcEehhHHhcCCCCccccccCCHHHhEeeEEEEcCCceEEEeCCcccCCCCCchHHHHHhhCC-chhh
Confidence 65555343 445689999999999999999999999999999999999999962 235789999999998 9999
Q ss_pred EEEEEEEEEEecCCeEEEEEEecc
Q 009286 238 VLVAWKVNLVDVPSIVTVFTVQKT 261 (538)
Q Consensus 238 ivt~~~~k~~p~~~~~~~~~~~~~ 261 (538)
|||++|||++|.|+....+.+.++
T Consensus 158 Vitevtlkl~P~p~~~~t~~~~~~ 181 (352)
T PRK11282 158 VLLEVSLKVLPRPRAELTLRLEMD 181 (352)
T ss_pred hheEEEEEEEecCceEEEEEEecC
Confidence 999999999999986655545443
No 12
>PLN02465 L-galactono-1,4-lactone dehydrogenase
Probab=99.96 E-value=1.8e-28 Score=263.19 Aligned_cols=177 Identities=19% Similarity=0.273 Sum_probs=160.1
Q ss_pred CCCCCCCCCCcEEEecCCHHHHHHHHHHHHHCCCeEEEEeCCCCCCCCccccCCCeEEEEccCCcce-EEcCCCCeEEEc
Q 009286 70 LYKPPEYGRPQVIVTPFDVSQIQAVLKCAQKHDLLVKVRSGGHDHEGLSYLSEVPFVMIDMINFSQI-DVDAEAKSAWVG 148 (538)
Q Consensus 70 r~~~~~~~~p~~vv~P~t~~dv~~~v~~a~~~~~~v~~~ggGh~~~g~~~~~~~~givIdl~~~~~i-~id~~~~~v~v~ 148 (538)
+|+.+..+.|.+++.|+|++||+++|++|+++++||+++|+|||+.+..... +.+|||++||+| ++|.++++|+|+
T Consensus 88 NWsg~~~~~p~~vv~P~S~eEV~~iV~~A~~~g~~VrvvGsGhS~~~l~~td---~glIdL~~l~~Il~vD~e~~~VtV~ 164 (573)
T PLN02465 88 NWSGTHEVQTRRYHQPESLEELEDIVKEAHEKGRRIRPVGSGLSPNGLAFSR---EGMVNLALMDKVLEVDKEKKRVTVQ 164 (573)
T ss_pred ccccccCCCCCEEEEeCCHHHHHHHHHHHHHcCCcEEEEcCCcCCCCeeeCC---CEEEECcCCCCcEEEeCCCCEEEEc
Confidence 4999999999999999999999999999999999999999999998877654 356899999998 999999999999
Q ss_pred CCCCHHHHHHHHHHhCCCceecC-CCCCcccccccCcCCccCCCccccCchHHhhheeEEeecCceeee-ccCCCcchhH
Q 009286 149 AGATLGELYYKISEKSKNLAFPA-GICPTVAVGGHLSGGGFGYIMRKYGLGADQVIDAHLVDVNGRILD-RKSMGEDLFW 226 (538)
Q Consensus 149 ~G~~~~~l~~~l~~~g~~l~~~~-g~~~~vgvgG~~~gGg~g~~~~~~G~~~d~v~~~~vV~~~G~i~~-~~~~~~dlf~ 226 (538)
+|+++.+|.+.|.++| ++++. |.....+|||.+++|+||.. ..+|..+|+|++++||+++|++++ +..+++||||
T Consensus 165 AG~~l~~L~~~L~~~G--Lal~n~g~I~~~TIGGaIstGtHGtG-~~~g~i~d~V~~l~lVta~G~vv~~s~~~~pdLF~ 241 (573)
T PLN02465 165 AGARVQQVVEALRPHG--LTLQNYASIREQQIGGFIQVGAHGTG-ARIPPIDEQVVSMKLVTPAKGTIELSKEDDPELFR 241 (573)
T ss_pred cCCCHHHHHHHHHHcC--CEeccCCCCCCeeecchhhCCCCCcC-CCcCcHhheEEEEEEEECCCCEEEECCCCCHHHHh
Confidence 9999999999999998 45554 55567899999999999985 468999999999999999999997 6667899999
Q ss_pred HhhccCCCCeEEEEEEEEEEEecCCeE
Q 009286 227 AIRGGGAASFGVLVAWKVNLVDVPSIV 253 (538)
Q Consensus 227 a~rG~~~g~~Givt~~~~k~~p~~~~~ 253 (538)
+.|++. |.|||||++|||++|.++..
T Consensus 242 aar~gl-G~lGVIteVTLql~P~~~L~ 267 (573)
T PLN02465 242 LARCGL-GGLGVVAEVTLQCVPAHRLV 267 (573)
T ss_pred HhhccC-CCCcEEEEEEEEEEecCceE
Confidence 999998 89999999999999998743
No 13
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. One of the enzymes Vanillyl-alcohol oxidase (VAO, 1.1.3.38 from EC) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110 []. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyses the oxidation of a wide variety of substrates, ranging from aromatic amines to 4-alkylphenols. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZR6_A 3HSU_A 2AXR_A 3D2J_A 3D2H_A 3FW9_A 3FW8_A 3FW7_A 3GSY_A 3FWA_A ....
Probab=99.94 E-value=4.9e-27 Score=211.47 Aligned_cols=136 Identities=34% Similarity=0.575 Sum_probs=124.7
Q ss_pred CcEEEecCCHHHHHHHHHHHHHCCCeEEEEeCCCCCCCCccccCCCeEEEEccCCcce-EEcCCCCeEEEcCCCCHHHHH
Q 009286 79 PQVIVTPFDVSQIQAVLKCAQKHDLLVKVRSGGHDHEGLSYLSEVPFVMIDMINFSQI-DVDAEAKSAWVGAGATLGELY 157 (538)
Q Consensus 79 p~~vv~P~t~~dv~~~v~~a~~~~~~v~~~ggGh~~~g~~~~~~~~givIdl~~~~~i-~id~~~~~v~v~~G~~~~~l~ 157 (538)
|.+|++|+|++||+++|++|+++++|+.++|+||++.+.+... ++++|||++||+| ++|++.++++|++|++|.||+
T Consensus 1 P~~vv~P~s~~ev~~~v~~a~~~~~~v~~~g~G~~~~~~~~~~--~~ivi~~~~l~~i~~id~~~~~v~v~aG~~~~~l~ 78 (139)
T PF01565_consen 1 PAAVVRPKSVEEVQAIVKFANENGVPVRVRGGGHSWTGQSSDE--GGIVIDMSRLNKIIEIDPENGTVTVGAGVTWGDLY 78 (139)
T ss_dssp ESEEEEESSHHHHHHHHHHHHHTTSEEEEESSSTTSSSTTSST--TEEEEECTTCGCEEEEETTTTEEEEETTSBHHHHH
T ss_pred CcEEEEeCCHHHHHHHHHHHHHcCCcEEEEcCCCCcccccccC--CcEEEeeccccccccccccceeEEEeccccchhcc
Confidence 7899999999999999999999999999999999999777633 4999999999995 999999999999999999999
Q ss_pred HHHHHhCCCceecCCCCCcccccccCcCCccCCCccccCchHHhhheeEEeecCceeee
Q 009286 158 YKISEKSKNLAFPAGICPTVAVGGHLSGGGFGYIMRKYGLGADQVIDAHLVDVNGRILD 216 (538)
Q Consensus 158 ~~l~~~g~~l~~~~g~~~~vgvgG~~~gGg~g~~~~~~G~~~d~v~~~~vV~~~G~i~~ 216 (538)
++|.++|+.+.+.++.+..+++||++++|++|..++.||..+|+|+++++|++||++++
T Consensus 79 ~~l~~~g~~~~~~~~~~~~~tvGG~i~~~~~g~~~~~~G~~~d~v~~~~~V~~~G~v~~ 137 (139)
T PF01565_consen 79 EALAPRGLMLPVEPGSGIPGTVGGAIAGNGHGSGSRRYGTAADNVLSVEVVLADGEVVR 137 (139)
T ss_dssp HHHHHHTEEESSGGGSTTTSBHHHHHHTT-EETTHHHHCBGGGGEEEEEEEETTSSEEE
T ss_pred cccccccccccccccccccceEchhhcCCCccccccccccHHHeEEEEEEEcCCCcEEE
Confidence 99999985444447888889999999999999999999999999999999999999986
No 14
>PRK11183 D-lactate dehydrogenase; Provisional
Probab=99.92 E-value=8.5e-24 Score=221.99 Aligned_cols=195 Identities=16% Similarity=0.197 Sum_probs=162.7
Q ss_pred CCCCcEEEecCCHHHHHHHHHHHHHCCCeEEEEeCCCCCCCCccccCC----CeEEEEccCCcce-EEcCCCCeEEEcCC
Q 009286 76 YGRPQVIVTPFDVSQIQAVLKCAQKHDLLVKVRSGGHDHEGLSYLSEV----PFVMIDMINFSQI-DVDAEAKSAWVGAG 150 (538)
Q Consensus 76 ~~~p~~vv~P~t~~dv~~~v~~a~~~~~~v~~~ggGh~~~g~~~~~~~----~givIdl~~~~~i-~id~~~~~v~v~~G 150 (538)
...|.+||+|.|++||+++|++|+++++||++||||+++.|.+.+.+. ++|+|||.+||+| +|| ++..++|+||
T Consensus 36 ~g~P~AVV~P~SteEVa~IVklC~e~~vPVIPRGgGTGLtGGAvP~~~~~dR~gVVIsl~RMNrIleID-~~~~VvVePG 114 (564)
T PRK11183 36 QGDALAVVFPGTLLELWRVLQACVAADKIIIMQAANTGLTGGSTPNGNDYDRDIVIISTLRLDKIQLLN-NGKQVLALPG 114 (564)
T ss_pred CCCCCEEEecCCHHHHHHHHHHHHHcCCeEEEeCCCcccccCcccCCCCCcCCEEEEEhhHcCCcEEEC-CCCeEEEeCC
Confidence 457999999999999999999999999999999999999988877532 3899999999999 888 5678999999
Q ss_pred CCHHHHHHHHHHhCCCceecCCC-CCcccccccCcCCccCCCccccCchHHhhheeEEeecCcee-------ee--c---
Q 009286 151 ATLGELYYKISEKSKNLAFPAGI-CPTVAVGGHLSGGGFGYIMRKYGLGADQVIDAHLVDVNGRI-------LD--R--- 217 (538)
Q Consensus 151 ~~~~~l~~~l~~~g~~l~~~~g~-~~~vgvgG~~~gGg~g~~~~~~G~~~d~v~~~~vV~~~G~i-------~~--~--- 217 (538)
+++.+|.++|.++|+......|+ |-.++|||.++.++-|....+||...++++. ++|+++|++ ++ .
T Consensus 115 Vtl~~LeeaLk~~Gl~p~sd~GSS~IGasIGGnIAtNAGG~~vlRgga~te~vL~-~~V~~dGel~lVn~lgi~lG~~~e 193 (564)
T PRK11183 115 TTLYQLEKALKPLGREPHSVIGSSCIGASVIGGICNNSGGALVQRGPAYTEMALY-AQIDEDGKLELVNHLGIDLGETPE 193 (564)
T ss_pred CcHHHHHHHHHHhCCCCCCcccccccCCCCccceEECCcchhheEcchhhhhhhh-hEECCCCcEEEeeccCcccCCCHH
Confidence 99999999999998532221233 3345788999999999999999999999999 999999999 32 1
Q ss_pred ------cCCCc----------------------------------chhHHh--hccCCCCeEEEEEEEEEEEecCCeEEE
Q 009286 218 ------KSMGE----------------------------------DLFWAI--RGGGAASFGVLVAWKVNLVDVPSIVTV 255 (538)
Q Consensus 218 ------~~~~~----------------------------------dlf~a~--rG~~~g~~Givt~~~~k~~p~~~~~~~ 255 (538)
+..+. |+...+ .|+. |.+||| +++++++|.|+...+
T Consensus 194 ~il~~l~~~gy~~~~~~~~~~~~~d~~y~~~vr~v~~~~parfnaDl~~LfeasGse-GkLgV~-avrLdtfp~p~~~~v 271 (564)
T PRK11183 194 EILTRLEDGRFDDEDVRHDGRHASDHEYAERVRDVDADTPARFNADPRRLFEASGCA-GKLAVF-AVRLDTFPAEKNTQV 271 (564)
T ss_pred HHHHhhhcCCCCccccCCccccCchhhHHHhhhccCCCCcccccCCHHHHhhccCCC-ceEEEE-EEEeccccCCCcceE
Confidence 11233 777777 8888 999999 999999999999889
Q ss_pred EEEecchhhhHHHHHHHHH
Q 009286 256 FTVQKTLEQNASQIHHKWQ 274 (538)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~ 274 (538)
|.+.+...+.+.++...+.
T Consensus 272 f~ig~n~~~~~~~~rr~il 290 (564)
T PRK11183 272 FYIGTNDPAVLTEIRRHIL 290 (564)
T ss_pred EEEeCCCHHHHHHHHHHHH
Confidence 9888877666665555443
No 15
>KOG4730 consensus D-arabinono-1, 4-lactone oxidase [Defense mechanisms]
Probab=99.91 E-value=6.1e-24 Score=213.99 Aligned_cols=210 Identities=17% Similarity=0.245 Sum_probs=176.2
Q ss_pred ccCCCchhHHhhhhcCCCCCCCcceEEcCCCcchHHHHhhcccccCCCCCCCCCCcEEEecCCHHHHHHHHHHHHHCCCe
Q 009286 25 LAHDTNEKFLQCLSVHSERTFISKVTYTQNNSSYISILNSLKQNLLYKPPEYGRPQVIVTPFDVSQIQAVLKCAQKHDLL 104 (538)
Q Consensus 25 ~~~~~~~~~~~c~~~~~~~~~~~~~~~~p~~~~y~~~~~~~~~n~r~~~~~~~~p~~vv~P~t~~dv~~~v~~a~~~~~~ 104 (538)
.+..|++++..|-+.. ...-....|.+ |+.+..++.+.|-+|+|++|+.++|+.|+++|.+
T Consensus 15 ~~S~Pp~~p~r~~~~~---------~~~t~~~tY~a----------fPdr~~c~aanv~yP~teaeL~~lVa~A~~a~~k 75 (518)
T KOG4730|consen 15 TSSIPPPPPFRCDSGN---------TFCTVANTYGA----------FPDRSTCKAANVNYPKTEAELVELVAAATEAGKK 75 (518)
T ss_pred eecCCCCCCccccccc---------eeeeeeecccc----------cCchhhhhhcccCCCCCHHHHHHHHHHHHHcCce
Confidence 3456677778886521 22223356765 7777778999999999999999999999999999
Q ss_pred EEEEeCCCCCCCCccccCCCeEEEEccCCcce-EEcCCCCeEEEcCCCCHHHHHHHHHHhCCCceec-CCCCCccccccc
Q 009286 105 VKVRSGGHDHEGLSYLSEVPFVMIDMINFSQI-DVDAEAKSAWVGAGATLGELYYKISEKSKNLAFP-AGICPTVAVGGH 182 (538)
Q Consensus 105 v~~~ggGh~~~g~~~~~~~~givIdl~~~~~i-~id~~~~~v~v~~G~~~~~l~~~l~~~g~~l~~~-~g~~~~vgvgG~ 182 (538)
+++.|.|||..+..+.. |.+|+++.||++ ++|++..++||++|+++.||.+++.+.| ++++ .+.-..++|||+
T Consensus 76 irvVg~gHSp~~l~ctd---g~lisl~~lnkVv~~dpe~~tvTV~aGirlrQLie~~~~~G--lsL~~~~si~e~sVgGi 150 (518)
T KOG4730|consen 76 IRVVGSGHSPSKLVCTD---GLLISLDKLNKVVEFDPELKTVTVQAGIRLRQLIEELAKLG--LSLPNAPSISEQSVGGI 150 (518)
T ss_pred EEEecccCCCCcceecc---ccEEEhhhhccceeeCchhceEEeccCcCHHHHHHHHHhcC--ccccCCCceecceeeeE
Confidence 99999999999887764 589999999998 9999999999999999999999999987 5666 466678899999
Q ss_pred CcCCccCCCccccCchHHhhheeEEeecCceeee-ccCCCcchhHHhhccCCCCeEEEEEEEEEEEecCCeEEEEEEe
Q 009286 183 LSGGGFGYIMRKYGLGADQVIDAHLVDVNGRILD-RKSMGEDLFWAIRGGGAASFGVLVAWKVNLVDVPSIVTVFTVQ 259 (538)
Q Consensus 183 ~~gGg~g~~~~~~G~~~d~v~~~~vV~~~G~i~~-~~~~~~dlf~a~rG~~~g~~Givt~~~~k~~p~~~~~~~~~~~ 259 (538)
+..|.||....-++.....++...++.++|.++. +++.+||+|.|.+.+. |.+|||.++||++.|+-+....+.++
T Consensus 151 i~TGaHGSS~~vH~~v~~i~~v~~~~~~~G~v~~Ls~e~dpe~F~AAkvSL-G~LGVIs~VTl~~vp~Fk~s~t~~v~ 227 (518)
T KOG4730|consen 151 ISTGAHGSSLWVHDYVSEIISVSPITPADGFVVVLSEEKDPELFNAAKVSL-GVLGVISQVTLSVVPAFKRSLTYVVT 227 (518)
T ss_pred EecccCCCccccCcccceeEEEeeeccCCceEEEecccCCHHHHhhhhhcc-cceeEEEEEEEEEEecceeeeEEEEe
Confidence 9999999877766766666666777778998776 7778899999999999 89999999999999998766655554
No 16
>PRK13905 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.91 E-value=2.7e-24 Score=217.48 Aligned_cols=163 Identities=23% Similarity=0.245 Sum_probs=141.8
Q ss_pred CCCCcEEEecCCHHHHHHHHHHHHHCCCeEEEEeCCCCCCCCccccCCCeEEEEccC-CcceEEcCCCCeEEEcCCCCHH
Q 009286 76 YGRPQVIVTPFDVSQIQAVLKCAQKHDLLVKVRSGGHDHEGLSYLSEVPFVMIDMIN-FSQIDVDAEAKSAWVGAGATLG 154 (538)
Q Consensus 76 ~~~p~~vv~P~t~~dv~~~v~~a~~~~~~v~~~ggGh~~~g~~~~~~~~givIdl~~-~~~i~id~~~~~v~v~~G~~~~ 154 (538)
...|.+++.|+|++||+++|++|+++++|+.++|+|||....+.+.+ +++|||++ |+.|++ ++.+++|+||+.|.
T Consensus 28 gg~a~~vv~P~s~edv~~~v~~a~~~~~p~~v~GgGsnll~~d~g~~--gvvI~l~~~l~~i~~--~~~~v~v~aG~~~~ 103 (298)
T PRK13905 28 GGPADYLVEPADIEDLQEFLKLLKENNIPVTVLGNGSNLLVRDGGIR--GVVIRLGKGLNEIEV--EGNRITAGAGAPLI 103 (298)
T ss_pred CceEeEEEeCCCHHHHHHHHHHHHHcCCCEEEEeCCceEEecCCCcc--eEEEEecCCcceEEe--cCCEEEEECCCcHH
Confidence 45799999999999999999999999999999999999875544333 89999998 998855 45789999999999
Q ss_pred HHHHHHHHhCCCceecCCCCCcccccccCcCCccCCCccccC-chHHhhheeEEeecCceeeeccCCCcchhHHhhccCC
Q 009286 155 ELYYKISEKSKNLAFPAGICPTVAVGGHLSGGGFGYIMRKYG-LGADQVIDAHLVDVNGRILDRKSMGEDLFWAIRGGGA 233 (538)
Q Consensus 155 ~l~~~l~~~g~~l~~~~g~~~~vgvgG~~~gGg~g~~~~~~G-~~~d~v~~~~vV~~~G~i~~~~~~~~dlf~a~rG~~~ 233 (538)
+|.++|.++|+ .|.+..++++| +.||+++++++.|| .++|+|+++++|++||++++.. +.|++|++|++..
T Consensus 104 ~L~~~l~~~Gl-----~gle~~~gipG-TVGGai~~NaG~~G~~~~d~v~~v~vv~~~G~~~~~~--~~e~~~~yR~s~~ 175 (298)
T PRK13905 104 KLARFAAEAGL-----SGLEFAAGIPG-TVGGAVFMNAGAYGGETADVLESVEVLDRDGEIKTLS--NEELGFGYRHSAL 175 (298)
T ss_pred HHHHHHHHcCC-----CcchhccCCCc-chhHHHHHcCCcCceEhheeEEEEEEEeCCCCEEEEE--HHHcCCcCccccC
Confidence 99999999983 46677788888 67899999999998 7999999999999999999743 3599999999874
Q ss_pred C-CeEEEEEEEEEEEecC
Q 009286 234 A-SFGVLVAWKVNLVDVP 250 (538)
Q Consensus 234 g-~~Givt~~~~k~~p~~ 250 (538)
+ .+||||+++||++|..
T Consensus 176 ~~~~gII~~~~l~l~~~~ 193 (298)
T PRK13905 176 QEEGLIVLSATFQLEPGD 193 (298)
T ss_pred CCCCEEEEEEEEEEcCCC
Confidence 4 3899999999999874
No 17
>KOG1232 consensus Proteins containing the FAD binding domain [Energy production and conversion]
Probab=99.89 E-value=5.1e-22 Score=195.41 Aligned_cols=188 Identities=21% Similarity=0.267 Sum_probs=168.6
Q ss_pred cccCCCCCCCCCCcEEEecCCHHHHHHHHHHHHHCCCeEEEEeCCCCCCCCccccCCCeEEEEccCCcce-EEcCCCCeE
Q 009286 67 QNLLYKPPEYGRPQVIVTPFDVSQIQAVLKCAQKHDLLVKVRSGGHDHEGLSYLSEVPFVMIDMINFSQI-DVDAEAKSA 145 (538)
Q Consensus 67 ~n~r~~~~~~~~p~~vv~P~t~~dv~~~v~~a~~~~~~v~~~ggGh~~~g~~~~~~~~givIdl~~~~~i-~id~~~~~v 145 (538)
+|.-|-..-......|.+|+|+++|++++++|+++++.|++.||.++..|.|.+.- +-|||+|.+||+| ++|+-.+++
T Consensus 78 ~n~dwm~kyrG~sklvL~Pkst~eVS~ILkYCn~~kLAVVPQGGNTgLVGgSVPvf-DEiVlsl~~mNKi~sfDevsGil 156 (511)
T KOG1232|consen 78 FNTDWMKKYRGQSKLVLKPKSTEEVSAILKYCNDRKLAVVPQGGNTGLVGGSVPVF-DEIVLSLGLMNKILSFDEVSGIL 156 (511)
T ss_pred hhhHHHHhccCCceEEecCCCHHHHHHHHHhhccccEEEecCCCCcccccCcccch-HHHhhhhhhhccccccccccceE
Confidence 46667776677889999999999999999999999999999999999888887653 3799999999999 999999999
Q ss_pred EEcCCCCHHHHHHHHHHhCCCceecCCCCCcccccccCcCCccCCCccccCchHHhhheeEEeecCceeee------ccC
Q 009286 146 WVGAGATLGELYYKISEKSKNLAFPAGICPTVAVGGHLSGGGFGYIMRKYGLGADQVIDAHLVDVNGRILD------RKS 219 (538)
Q Consensus 146 ~v~~G~~~~~l~~~l~~~g~~l~~~~g~~~~vgvgG~~~gGg~g~~~~~~G~~~d~v~~~~vV~~~G~i~~------~~~ 219 (538)
++++|+.+.++..+|+++|+.+++..|.-.++-|||.+++.+-|..--+||....+|+++|+|+|+|+++. ...
T Consensus 157 ~cdaG~ILen~d~~l~e~g~m~PlDLgAKgsCqiGG~vsTnAGGlrllRYGsLHgsvLGle~Vlp~G~vl~~~~slRKDN 236 (511)
T KOG1232|consen 157 KCDAGVILENADNFLAEKGYMFPLDLGAKGSCQIGGNVSTNAGGLRLLRYGSLHGSVLGLEVVLPNGTVLDLLSSLRKDN 236 (511)
T ss_pred EeccceEehhhHHHHHhcCceeeecCCCcccceecceeeccCCceEEEEecccccceeeeEEEcCCCchhhhhhhhcccC
Confidence 99999999999999999997666667888888999999999999999999999999999999999999995 344
Q ss_pred CCcchhHHhhccCCCCeEEEEEEEEEEEecCCeEEEE
Q 009286 220 MGEDLFWAIRGGGAASFGVLVAWKVNLVDVPSIVTVF 256 (538)
Q Consensus 220 ~~~dlf~a~rG~~~g~~Givt~~~~k~~p~~~~~~~~ 256 (538)
.+.|+-....|+. |++||||++++-+.|.|+.+...
T Consensus 237 TgydlkhLFIGSE-GtlGVvT~vSil~~~kpksvn~a 272 (511)
T KOG1232|consen 237 TGYDLKHLFIGSE-GTLGVVTKVSILAPPKPKSVNVA 272 (511)
T ss_pred ccccchhheecCC-ceeeEEeeEEEeecCCCcceeEE
Confidence 5789999999999 99999999999999999865443
No 18
>PRK14652 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.86 E-value=3.1e-21 Score=194.50 Aligned_cols=163 Identities=20% Similarity=0.201 Sum_probs=137.2
Q ss_pred CCCCCcEEEecCCHHHHHHHHHHHHHCCCeEEEEeCCCCCCCCccccCCCeEEEEccC-CcceEEcCCCCeEEEcCCCCH
Q 009286 75 EYGRPQVIVTPFDVSQIQAVLKCAQKHDLLVKVRSGGHDHEGLSYLSEVPFVMIDMIN-FSQIDVDAEAKSAWVGAGATL 153 (538)
Q Consensus 75 ~~~~p~~vv~P~t~~dv~~~v~~a~~~~~~v~~~ggGh~~~g~~~~~~~~givIdl~~-~~~i~id~~~~~v~v~~G~~~ 153 (538)
....|.+++.|+|++||++++++|+++++|+.++|+|||....+.+.+ +++|++++ ++.+.++ +.+++||||+.|
T Consensus 32 igg~a~~~v~p~~~edl~~~v~~a~~~~ip~~vlGgGSNllv~d~g~~--gvVI~l~~~~~~i~~~--~~~v~v~AG~~~ 107 (302)
T PRK14652 32 VGGPADLLVRPADPDALSALLRAVRELGVPLSILGGGANTLVADAGVR--GVVLRLPQDFPGESTD--GGRLVLGAGAPI 107 (302)
T ss_pred cCCcceEEEEcCCHHHHHHHHHHHHHCCCcEEEEcCCcceeecCCCEe--eEEEEecCCcceEEec--CCEEEEECCCcH
Confidence 345899999999999999999999999999999999999875444333 89999976 5556543 469999999999
Q ss_pred HHHHHHHHHhCCCceecCCCCCcccccccCcCCccCCCcc-ccCchHHhhheeEEeecCceeeeccCCCcchhHHhhccC
Q 009286 154 GELYYKISEKSKNLAFPAGICPTVAVGGHLSGGGFGYIMR-KYGLGADQVIDAHLVDVNGRILDRKSMGEDLFWAIRGGG 232 (538)
Q Consensus 154 ~~l~~~l~~~g~~l~~~~g~~~~vgvgG~~~gGg~g~~~~-~~G~~~d~v~~~~vV~~~G~i~~~~~~~~dlf~a~rG~~ 232 (538)
.+|.+++.++|+ .|.++.+||+| +.||+..++++ ++|.+.|+|+++++|+++| +.... ..|+.|+||++.
T Consensus 108 ~~L~~~~~~~GL-----~GlE~l~gIPG-TvGGav~mNaGa~ggei~d~v~~v~vv~~~G-~~~~~--~~e~~f~YR~s~ 178 (302)
T PRK14652 108 SRLPARAHAHGL-----VGMEFLAGIPG-TLGGAVAMNAGTKLGEMKDVVTAVELATADG-AGFVP--AAALGYAYRTCR 178 (302)
T ss_pred HHHHHHHHHcCC-----cccccccCCCc-chhHHHHHcCCCCceEhhheEEEEEEECCCC-cEEee--hhhcCcccceec
Confidence 999999999983 38889999999 88999999986 5578999999999999999 44322 369999999975
Q ss_pred CCCeEEEEEEEEEEEecC
Q 009286 233 AASFGVLVAWKVNLVDVP 250 (538)
Q Consensus 233 ~g~~Givt~~~~k~~p~~ 250 (538)
.+..||||+++||++|..
T Consensus 179 ~~~~~II~~a~~~L~~~~ 196 (302)
T PRK14652 179 LPPGAVITRVEVRLRPGD 196 (302)
T ss_pred cCCCeEEEEEEEEEecCC
Confidence 444489999999999854
No 19
>TIGR00179 murB UDP-N-acetylenolpyruvoylglucosamine reductase. This model describes MurB, UDP-N-acetylenolpyruvoylglucosamine reductase, which is also called UDP-N-acetylmuramate dehydrogenase. It is part of the pathway for the biosynthesis of the UDP-N-acetylmuramoyl-pentapeptide that is a precursor of bacterial peptidoglycan.
Probab=99.85 E-value=2.7e-21 Score=193.78 Aligned_cols=163 Identities=20% Similarity=0.199 Sum_probs=142.1
Q ss_pred CCCCCcEEEecCCHHHHHHHHHHHHHCCCeEEEEeCCCCCCCCccccCCCeEEEEccCCcceEEcCCCCeEEEcCCCCHH
Q 009286 75 EYGRPQVIVTPFDVSQIQAVLKCAQKHDLLVKVRSGGHDHEGLSYLSEVPFVMIDMINFSQIDVDAEAKSAWVGAGATLG 154 (538)
Q Consensus 75 ~~~~p~~vv~P~t~~dv~~~v~~a~~~~~~v~~~ggGh~~~g~~~~~~~~givIdl~~~~~i~id~~~~~v~v~~G~~~~ 154 (538)
....|.++++|+|++||++++++|+++++|+.++|+|||....+.+.+ +++|++++|+.+.+++ +.+++|+||+.|.
T Consensus 9 igg~a~~~v~p~s~edl~~~l~~a~~~~~p~~vlGgGSNll~~d~~~~--gvvi~l~~~~~~~~~~-~~~v~v~aG~~~~ 85 (284)
T TIGR00179 9 IGGNARHIVCPESIEQLVNVLDNAKEEDQPLLILGEGSNLLILDDGRG--GVIINLGKGIDIEDDE-GEYVHVGGGENWH 85 (284)
T ss_pred cCceeeEEEEeCCHHHHHHHHHHHHHcCCCEEEEecceEEEEccCCcC--eEEEECCCCceEEEec-CCEEEEEcCCcHH
Confidence 345799999999999999999999999999999999999987776554 8999999999887766 5799999999999
Q ss_pred HHHHHHHHhCCCceecCCCCCcccccccCcCCccCCCccccCchHH-hhheeEEeecCceeeeccCCCcchhHHhhccCC
Q 009286 155 ELYYKISEKSKNLAFPAGICPTVAVGGHLSGGGFGYIMRKYGLGAD-QVIDAHLVDVNGRILDRKSMGEDLFWAIRGGGA 233 (538)
Q Consensus 155 ~l~~~l~~~g~~l~~~~g~~~~vgvgG~~~gGg~g~~~~~~G~~~d-~v~~~~vV~~~G~i~~~~~~~~dlf~a~rG~~~ 233 (538)
+|.+++.++|+ .|.+..+|++| ++||+++++++.||...+ .|++++||++||++++.. ..|+.|+||.+..
T Consensus 86 ~l~~~~~~~Gl-----~GlE~l~giPG-tvGGai~mNAGayG~~i~d~l~~v~vv~~~G~~~~~~--~~~~~f~YR~S~f 157 (284)
T TIGR00179 86 KLVKYALKNGL-----SGLEFLAGIPG-TVGGAVIMNAGAYGVEISEVLVYATILLATGKTEWLT--NEQLGFGYRTSIF 157 (284)
T ss_pred HHHHHHHHCCC-----cccccCCCCCc-hHHHHHHHhcccchhehhheEEEEEEEeCCCCEEEEE--HHHccccCCcccc
Confidence 99999999983 58999999999 689999999999999775 679999999999998743 3599999998764
Q ss_pred CC-e-EEEEEEEEEEEe
Q 009286 234 AS-F-GVLVAWKVNLVD 248 (538)
Q Consensus 234 g~-~-Givt~~~~k~~p 248 (538)
.. . .||++++|++.+
T Consensus 158 ~~~~~~iil~a~~~l~~ 174 (284)
T TIGR00179 158 QHKYVGLVLKAEFQLTL 174 (284)
T ss_pred CCCCcEEEEEEEEEecc
Confidence 32 2 699999999843
No 20
>PRK12436 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.85 E-value=2.7e-21 Score=195.35 Aligned_cols=163 Identities=17% Similarity=0.198 Sum_probs=136.2
Q ss_pred CCCCCcEEEecCCHHHHHHHHHHHHHCCCeEEEEeCCCCCCCCccccCCCeEEEEccCCcceEEcCCCCeEEEcCCCCHH
Q 009286 75 EYGRPQVIVTPFDVSQIQAVLKCAQKHDLLVKVRSGGHDHEGLSYLSEVPFVMIDMINFSQIDVDAEAKSAWVGAGATLG 154 (538)
Q Consensus 75 ~~~~p~~vv~P~t~~dv~~~v~~a~~~~~~v~~~ggGh~~~g~~~~~~~~givIdl~~~~~i~id~~~~~v~v~~G~~~~ 154 (538)
....|.++++|+|++||++++++|+++++|+.++|+|||+...+.+.+ +++|+|++|++|+++ +.+++|++|+.+.
T Consensus 33 igg~a~~vv~p~~~edv~~~l~~a~~~~ip~~v~GgGSNll~~d~g~~--GvvI~l~~l~~i~~~--~~~v~v~aG~~~~ 108 (305)
T PRK12436 33 VGGKADVFVAPTNYDEIQEVIKYANKYNIPVTFLGNGSNVIIKDGGIR--GITVSLIHITGVTVT--GTTIVAQCGAAII 108 (305)
T ss_pred cCceEEEEEecCCHHHHHHHHHHHHHcCCCEEEEcCCeEEEEeCCCee--EEEEEeCCcCcEEEe--CCEEEEEeCCcHH
Confidence 345799999999999999999999999999999999999885444443 899999889998776 4689999999999
Q ss_pred HHHHHHHHhCCCceecCCCCCcccccccCcCCccCCCccccC-chHHhhheeEEeecCceeeeccCCCcchhHHhhccCC
Q 009286 155 ELYYKISEKSKNLAFPAGICPTVAVGGHLSGGGFGYIMRKYG-LGADQVIDAHLVDVNGRILDRKSMGEDLFWAIRGGGA 233 (538)
Q Consensus 155 ~l~~~l~~~g~~l~~~~g~~~~vgvgG~~~gGg~g~~~~~~G-~~~d~v~~~~vV~~~G~i~~~~~~~~dlf~a~rG~~~ 233 (538)
+|.+++.++|+ .|....+|++| +.||+..++++.|| ...|.+.+++|+++||++++.+ +.|+.|+||.+..
T Consensus 109 ~L~~~~~~~gl-----~Gle~~~giPG-tVGGav~~NAGayG~~~~dvl~~v~vv~~~G~v~~~~--~~e~~f~YR~s~~ 180 (305)
T PRK12436 109 DVSRIALDHNL-----TGLEFACGIPG-SVGGALYMNAGAYGGEISFVLTEAVVMTGDGELRTLT--KEAFEFGYRKSVF 180 (305)
T ss_pred HHHHHHHHcCC-----ccchhhcCCcc-chhHHHHhcCccchhehheeeeEEEEEeCCCCEEEEE--HHHhcCcCCCCcC
Confidence 99999999984 35555556767 35788888888898 5668888999999999999743 3589999998854
Q ss_pred C-CeEEEEEEEEEEEec
Q 009286 234 A-SFGVLVAWKVNLVDV 249 (538)
Q Consensus 234 g-~~Givt~~~~k~~p~ 249 (538)
. ...||++++||+.+.
T Consensus 181 ~~~~~iil~a~~~l~~~ 197 (305)
T PRK12436 181 ANNHYIILEARFELEEG 197 (305)
T ss_pred CCCCEEEEEEEEEEcCC
Confidence 3 357999999999875
No 21
>PRK13906 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.85 E-value=5.6e-21 Score=193.07 Aligned_cols=161 Identities=19% Similarity=0.210 Sum_probs=139.9
Q ss_pred CCCcEEEecCCHHHHHHHHHHHHHCCCeEEEEeCCCCCCCCccccCCCeEEEEccCCcceEEcCCCCeEEEcCCCCHHHH
Q 009286 77 GRPQVIVTPFDVSQIQAVLKCAQKHDLLVKVRSGGHDHEGLSYLSEVPFVMIDMINFSQIDVDAEAKSAWVGAGATLGEL 156 (538)
Q Consensus 77 ~~p~~vv~P~t~~dv~~~v~~a~~~~~~v~~~ggGh~~~g~~~~~~~~givIdl~~~~~i~id~~~~~v~v~~G~~~~~l 156 (538)
..+.+++.|+|++||+++|++|+++++|+.++|+|||....+.+.+ +++|++++|++|+++. .+++||||+.|.+|
T Consensus 35 G~A~~~v~p~~~edv~~~v~~a~~~~ip~~vlGgGSNll~~d~g~~--GvvI~l~~l~~i~~~~--~~v~v~aG~~~~~l 110 (307)
T PRK13906 35 GNADFYITPTKNEEVQAVVKYAYQNEIPVTYLGNGSNIIIREGGIR--GIVISLLSLDHIEVSD--DAIIAGSGAAIIDV 110 (307)
T ss_pred ceeEEEEEcCCHHHHHHHHHHHHHcCCCEEEEcCceeEeecCCCcc--eEEEEecCccceEEeC--CEEEEECCCcHHHH
Confidence 4789999999999999999999999999999999999885554444 8999998999998763 58999999999999
Q ss_pred HHHHHHhCCCceecCCCCCcccccccCcCCccCCCccccC-chHHhhheeEEeecCceeeeccCCCcchhHHhhccCCCC
Q 009286 157 YYKISEKSKNLAFPAGICPTVAVGGHLSGGGFGYIMRKYG-LGADQVIDAHLVDVNGRILDRKSMGEDLFWAIRGGGAAS 235 (538)
Q Consensus 157 ~~~l~~~g~~l~~~~g~~~~vgvgG~~~gGg~g~~~~~~G-~~~d~v~~~~vV~~~G~i~~~~~~~~dlf~a~rG~~~g~ 235 (538)
.+++.++| ..|.+..+||+| +.||+..++++.|| .++|+|+++++|+++|++++.. ..|+.|+||.+....
T Consensus 111 ~~~~~~~G-----l~GlE~~~gIPG-tVGGav~mNaGayGg~i~D~l~~v~vv~~~G~~~~~~--~~e~~f~YR~S~~~~ 182 (307)
T PRK13906 111 SRVARDYA-----LTGLEFACGIPG-SIGGAVYMNAGAYGGEVKDCIDYALCVNEQGSLIKLT--TKELELDYRNSIIQK 182 (307)
T ss_pred HHHHHHcC-----CccchhhcCCCc-cHhHHHHhhCCcchhhhhhheeEEEEEeCCCCEEEEE--HHHccCcCCcccCCC
Confidence 99999998 357777889999 78999999999995 8899999999999999999743 358999999876432
Q ss_pred -eEEEEEEEEEEEec
Q 009286 236 -FGVLVAWKVNLVDV 249 (538)
Q Consensus 236 -~Givt~~~~k~~p~ 249 (538)
--||++++|++.|.
T Consensus 183 ~~~ii~~~~~~l~~~ 197 (307)
T PRK13906 183 EHLVVLEAAFTLAPG 197 (307)
T ss_pred CCEEEEEEEEEECCC
Confidence 24999999999863
No 22
>KOG1233 consensus Alkyl-dihydroxyacetonephosphate synthase [General function prediction only]
Probab=99.83 E-value=6.3e-20 Score=180.96 Aligned_cols=191 Identities=20% Similarity=0.249 Sum_probs=162.1
Q ss_pred CCCCCCCCCcEEEecCCHHHHHHHHHHHHHCCCeEEEEeCCCCCC-CCccccCC--CeEEEEccCCcce-EEcCCCCeEE
Q 009286 71 YKPPEYGRPQVIVTPFDVSQIQAVLKCAQKHDLLVKVRSGGHDHE-GLSYLSEV--PFVMIDMINFSQI-DVDAEAKSAW 146 (538)
Q Consensus 71 ~~~~~~~~p~~vv~P~t~~dv~~~v~~a~~~~~~v~~~ggGh~~~-g~~~~~~~--~givIdl~~~~~i-~id~~~~~v~ 146 (538)
|.......|..|+.|++.+||.++|+.|.++|+-+.+.|||+|.. +..++... .-+-+|++.||+| .+|.++.++.
T Consensus 153 regkf~RiPDiVvWP~chdevVkiv~lA~khN~~iiPiGGGTSVs~al~cP~~E~R~iislDtsqmnriLWidreNLT~~ 232 (613)
T KOG1233|consen 153 REGKFPRIPDIVVWPKCHDEVVKIVELAMKHNCAIIPIGGGTSVSNALDCPETEKRAIISLDTSQMNRILWIDRENLTCR 232 (613)
T ss_pred hcCccCCCCceEecccchHHHHHHHHHHhhcCeEEEEeCCcccccccccCCcccceeEEEecHHhhhheeEeccccceEE
Confidence 555667799999999999999999999999999999999999977 44454432 2455788999999 8999999999
Q ss_pred EcCCCCHHHHHHHHHHhCCCceecCCCCCcccccccCcCCccCCCccccCchHHhhheeEEeecCceeee-----ccCCC
Q 009286 147 VGAGATLGELYYKISEKSKNLAFPAGICPTVAVGGHLSGGGFGYIMRKYGLGADQVIDAHLVDVNGRILD-----RKSMG 221 (538)
Q Consensus 147 v~~G~~~~~l~~~l~~~g~~l~~~~g~~~~vgvgG~~~gGg~g~~~~~~G~~~d~v~~~~vV~~~G~i~~-----~~~~~ 221 (538)
+++|+.-.+|.+.|.+.|+...-.+.+..-.++||+++..+.|+--..||.+-|-|+-+++|+|.|.+.+ .-+.+
T Consensus 233 ~eaGIvGQ~LERqL~~~G~t~GHEPDS~EFSTlGGWVsTRASGMKKN~YGNIEDLVVh~~mVtP~Giiek~Cq~PRmS~G 312 (613)
T KOG1233|consen 233 AEAGIVGQSLERQLNKKGFTCGHEPDSIEFSTLGGWVSTRASGMKKNKYGNIEDLVVHLNMVTPKGIIEKQCQVPRMSSG 312 (613)
T ss_pred EecCcchHHHHHHHhhcCcccCCCCCceeeecccceeeeccccccccccCChhHheEEEEeecCcchhhhhhcCCcccCC
Confidence 9999999999999999884221122233345899999999999999999999999999999999999885 23468
Q ss_pred cchhHHhhccCCCCeEEEEEEEEEEEecCCeEEEEEEecch
Q 009286 222 EDLFWAIRGGGAASFGVLVAWKVNLVDVPSIVTVFTVQKTL 262 (538)
Q Consensus 222 ~dlf~a~rG~~~g~~Givt~~~~k~~p~~~~~~~~~~~~~~ 262 (538)
||+..-+.|+. |++||||++++|+.|+|+....-.+.|+.
T Consensus 313 PDihh~IlGSE-GTLGVitEvtiKirPiPe~~ryGS~aFPN 352 (613)
T KOG1233|consen 313 PDIHHIILGSE-GTLGVITEVTIKIRPIPEVKRYGSFAFPN 352 (613)
T ss_pred CCcceEEeccC-cceeEEEEEEEEEeechhhhhcCccccCc
Confidence 99999999999 99999999999999999876666667764
No 23
>PRK13903 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.83 E-value=5.5e-20 Score=188.63 Aligned_cols=165 Identities=16% Similarity=0.127 Sum_probs=139.1
Q ss_pred CCCCCcEEEecCCHHHHHHHHHHHHHCCCeEEEEeCCCCCCCCccccCCCeEEEEccCCcceEEcCCCCeEEEcCCCCHH
Q 009286 75 EYGRPQVIVTPFDVSQIQAVLKCAQKHDLLVKVRSGGHDHEGLSYLSEVPFVMIDMINFSQIDVDAEAKSAWVGAGATLG 154 (538)
Q Consensus 75 ~~~~p~~vv~P~t~~dv~~~v~~a~~~~~~v~~~ggGh~~~g~~~~~~~~givIdl~~~~~i~id~~~~~v~v~~G~~~~ 154 (538)
....+.+++.|+|++||++++++|+++++|+.++|+|||....+.+.+ +++|+++ ++.++++.+..+|+|++|+.|.
T Consensus 29 iGg~A~~~~~p~s~edl~~~l~~a~~~~~p~~vlGgGSNlLv~D~g~~--GvVI~l~-~~~i~i~~~~~~v~vgAG~~~~ 105 (363)
T PRK13903 29 VGGPARRLVTCTSTEELVAAVRELDAAGEPLLVLGGGSNLVIADDGFD--GTVVRVA-TRGVTVDCGGGLVRAEAGAVWD 105 (363)
T ss_pred cCccceEEEEeCCHHHHHHHHHHHHHCCCCEEEEeCCeeEeECCCCcc--EEEEEeC-CCcEEEeCCCCEEEEEcCCCHH
Confidence 345799999999999999999999999999999999999886555444 8999997 5888887667899999999999
Q ss_pred HHHHHHHHhCCCceecCCCCCcccccccCcCCccCCCccccCc-hHHhhheeEEeecC-ceeeeccCCCcchhHHhhccC
Q 009286 155 ELYYKISEKSKNLAFPAGICPTVAVGGHLSGGGFGYIMRKYGL-GADQVIDAHLVDVN-GRILDRKSMGEDLFWAIRGGG 232 (538)
Q Consensus 155 ~l~~~l~~~g~~l~~~~g~~~~vgvgG~~~gGg~g~~~~~~G~-~~d~v~~~~vV~~~-G~i~~~~~~~~dlf~a~rG~~ 232 (538)
+|.+++.++| ..|.+..+||+|.+ ||+.-++.+.||. +.|.|.++++++.+ |++++.. +.|++|+||++.
T Consensus 106 ~l~~~a~~~G-----L~GlE~laGIPGTV-GGAv~mNaGayG~ei~D~l~sV~vvd~~~G~~~~~~--~~el~f~YR~S~ 177 (363)
T PRK13903 106 DVVARTVEAG-----LGGLECLSGIPGSA-GATPVQNVGAYGQEVSDTITRVRLLDRRTGEVRWVP--AADLGFGYRTSV 177 (363)
T ss_pred HHHHHHHHcC-----CccccccCCCCcch-hhHhhcCCChhHHHHhhhEeEEEEEECCCCEEEEEE--HHHcceeccccc
Confidence 9999999998 46667777777744 6777777888875 57999999999965 9999743 469999999973
Q ss_pred C--CCeEEEEEEEEEEEecC
Q 009286 233 A--ASFGVLVAWKVNLVDVP 250 (538)
Q Consensus 233 ~--g~~Givt~~~~k~~p~~ 250 (538)
. ++++|||+++||+.|..
T Consensus 178 f~~~~~~IIl~a~f~L~~~~ 197 (363)
T PRK13903 178 LKHSDRAVVLEVEFQLDPSG 197 (363)
T ss_pred cCCCCCEEEEEEEEEEEcCC
Confidence 2 34789999999999863
No 24
>PRK14649 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.81 E-value=3.2e-19 Score=179.46 Aligned_cols=166 Identities=17% Similarity=0.149 Sum_probs=138.0
Q ss_pred CCCCCcEEEecCCHHHHHHHHHHHHHCCCeEEEEeCCCCCCCCccccCCCeEEEEccCCc-ceEEcCCCCeEEEcCCCCH
Q 009286 75 EYGRPQVIVTPFDVSQIQAVLKCAQKHDLLVKVRSGGHDHEGLSYLSEVPFVMIDMINFS-QIDVDAEAKSAWVGAGATL 153 (538)
Q Consensus 75 ~~~~p~~vv~P~t~~dv~~~v~~a~~~~~~v~~~ggGh~~~g~~~~~~~~givIdl~~~~-~i~id~~~~~v~v~~G~~~ 153 (538)
......+++.|+|++|+++++++|+++++|+.++|+|||+...+.+.+ |++|++++++ ++..+.+..+++|++|+.|
T Consensus 17 iGg~a~~~v~p~~~~dl~~~l~~~~~~~ip~~vlG~GSNlL~~d~g~~--GvVI~l~~~~~~i~~~~~~~~v~v~AG~~~ 94 (295)
T PRK14649 17 IGGPARYFVEPTTPDEAIAAAAWAEQRQLPLFWLGGGSNLLVRDEGFD--GLVARYRGQRWELHEHGDTAEVWVEAGAPM 94 (295)
T ss_pred eCceeeEEEEcCCHHHHHHHHHHHHHCCCCEEEEecceeEEEeCCCcC--eEEEEecCCCcEEEEeCCcEEEEEEcCCcH
Confidence 344778899999999999999999999999999999999998887665 8999998754 6666655558999999999
Q ss_pred HHHHHHHHHhCCCceecCCCCCcccccccCcCCccCCCcccc-CchHHhhheeEEeecCceeeeccCCCcchhHHhhccC
Q 009286 154 GELYYKISEKSKNLAFPAGICPTVAVGGHLSGGGFGYIMRKY-GLGADQVIDAHLVDVNGRILDRKSMGEDLFWAIRGGG 232 (538)
Q Consensus 154 ~~l~~~l~~~g~~l~~~~g~~~~vgvgG~~~gGg~g~~~~~~-G~~~d~v~~~~vV~~~G~i~~~~~~~~dlf~a~rG~~ 232 (538)
.+|.+++.++| ..|.++.+||+| ++||+.-++.+.| +.+.|.|.++++++.+|++++.. ..|++|+||-+.
T Consensus 95 ~~l~~~~~~~G-----L~GlE~l~GIPG-TvGGa~~mNaGayg~ei~d~l~~V~~~~~~g~~~~~~--~~el~f~YR~S~ 166 (295)
T PRK14649 95 AGTARRLAAQG-----WAGLEWAEGLPG-TIGGAIYGNAGCYGGDTATVLIRAWLLLNGSECVEWS--VHDFAYGYRTSV 166 (295)
T ss_pred HHHHHHHHHcC-----CccccccCCCCc-chhHHHHhhccccceEhheeEEEEEEEeCCCCEEEEe--HHHcCcccceee
Confidence 99999999998 467789999999 6677555555555 57899999999999999998743 349999999875
Q ss_pred CCCe---------EEEEEEEEEEEecC
Q 009286 233 AASF---------GVLVAWKVNLVDVP 250 (538)
Q Consensus 233 ~g~~---------Givt~~~~k~~p~~ 250 (538)
.... -||++++|++.|..
T Consensus 167 ~~~~~~~~~~~~~~ii~~~~~~l~~~~ 193 (295)
T PRK14649 167 LKQLRADGITWRPPLVLAARFRLHRDD 193 (295)
T ss_pred cccccccccccCCeEEEEEEEEECCCC
Confidence 3321 28999999997753
No 25
>PRK14653 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.72 E-value=3.2e-17 Score=164.37 Aligned_cols=161 Identities=15% Similarity=0.206 Sum_probs=138.8
Q ss_pred CCCCcEEEecCCHHHHHHHHHHHHHCCCeEEEEeCCCCCCCCccccCCCeEEEEccCCcceEEcCCCCeEEEcCCCCHHH
Q 009286 76 YGRPQVIVTPFDVSQIQAVLKCAQKHDLLVKVRSGGHDHEGLSYLSEVPFVMIDMINFSQIDVDAEAKSAWVGAGATLGE 155 (538)
Q Consensus 76 ~~~p~~vv~P~t~~dv~~~v~~a~~~~~~v~~~ggGh~~~g~~~~~~~~givIdl~~~~~i~id~~~~~v~v~~G~~~~~ 155 (538)
.....+++.|+|.+|+++++++|++ ++|+.+.|+|+|....+.+.+ +++|.+++|+.++++. ..++|+||+.|.+
T Consensus 31 GG~A~~~v~p~s~eel~~~~~~~~~-~~p~~vlG~GSNlLv~d~g~~--gvVI~l~~~~~i~i~~--~~v~v~AG~~l~~ 105 (297)
T PRK14653 31 GGPVPLFAIPNSTNGFIETINLLKE-GIEVKILGNGTNVLPKDEPMD--FVVVSTERLDDIFVDN--DKIICESGLSLKK 105 (297)
T ss_pred CcEEEEEEecCCHHHHHHHHHHHhc-CCCEEEEcCCeeEEEecCCcc--EEEEEeCCcCceEEeC--CEEEEeCCCcHHH
Confidence 3467789999999999999999999 999999999999998887665 8999997899998863 6899999999999
Q ss_pred HHHHHHHhCCCceecCCCCCcccccccCcCCccCCCccccCc-hHHhhheeEEeecCceeeeccCCCcchhHHhhccCCC
Q 009286 156 LYYKISEKSKNLAFPAGICPTVAVGGHLSGGGFGYIMRKYGL-GADQVIDAHLVDVNGRILDRKSMGEDLFWAIRGGGAA 234 (538)
Q Consensus 156 l~~~l~~~g~~l~~~~g~~~~vgvgG~~~gGg~g~~~~~~G~-~~d~v~~~~vV~~~G~i~~~~~~~~dlf~a~rG~~~g 234 (538)
|.+++.++| ..|....+||+|. .||+.-++++.||. +.|.|.++++++ +|++++.. ..|+.|.||.+..+
T Consensus 106 L~~~~~~~G-----L~GlE~l~gIPGT-VGGAv~mNAGayG~ei~d~l~~V~~~d-~g~v~~~~--~~e~~f~YR~S~~~ 176 (297)
T PRK14653 106 LCLVAAKNG-----LSGFENAYGIPGS-VGGAVYMNAGAYGWETAENIVEVVAYD-GKKIIRLG--KNEIKFSYRNSIFK 176 (297)
T ss_pred HHHHHHHCC-----CcchhhhcCCchh-HHHHHHHhCccCchhhheeEEEEEEEC-CCEEEEEc--hhhccccCccccCC
Confidence 999999998 4778888889995 78999999999988 889999999999 78888643 34999999977543
Q ss_pred C--eEEEEEEEEEEEecC
Q 009286 235 S--FGVLVAWKVNLVDVP 250 (538)
Q Consensus 235 ~--~Givt~~~~k~~p~~ 250 (538)
. --||++++||+.|..
T Consensus 177 ~~~~~iI~~a~f~L~~~~ 194 (297)
T PRK14653 177 EEKDLIILRVTFKLKKGN 194 (297)
T ss_pred CCCcEEEEEEEEEEecCC
Confidence 2 129999999998853
No 26
>COG0812 MurB UDP-N-acetylmuramate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.67 E-value=3.5e-16 Score=153.87 Aligned_cols=165 Identities=22% Similarity=0.254 Sum_probs=145.5
Q ss_pred CCCCCcEEEecCCHHHHHHHHHHHHHCCCeEEEEeCCCCCCCCccccCCCeEEEEccCCcceEEcCCCCeEEEcCCCCHH
Q 009286 75 EYGRPQVIVTPFDVSQIQAVLKCAQKHDLLVKVRSGGHDHEGLSYLSEVPFVMIDMINFSQIDVDAEAKSAWVGAGATLG 154 (538)
Q Consensus 75 ~~~~p~~vv~P~t~~dv~~~v~~a~~~~~~v~~~ggGh~~~g~~~~~~~~givIdl~~~~~i~id~~~~~v~v~~G~~~~ 154 (538)
.......++.|++.+|+.++++++.+.++|+.+.|+|+|..-.+.+.+ +++|.+.+++.++++.+...++|++|+.|.
T Consensus 17 iGg~A~~~~~~~~~e~l~~~~~~~~~~~~p~~ilG~GSNlLv~d~g~~--gvvi~~~~~~~~~~~~~~~~i~a~aG~~~~ 94 (291)
T COG0812 17 IGGPAEVLVEPRDIEELKAALKYAKAEDLPVLILGGGSNLLVRDGGIG--GVVIKLGKLNFIEIEGDDGLIEAGAGAPWH 94 (291)
T ss_pred cCcceeEEEecCCHHHHHHHHHhhhhcCCCEEEEecCceEEEecCCCc--eEEEEcccccceeeeccCCeEEEccCCcHH
Confidence 455788999999999999999999999999999999999887766655 899999999999888777799999999999
Q ss_pred HHHHHHHHhCCCceecCCCCCcccccccCcCCccCCCccccCc-hHHhhheeEEeecCceeeeccCCCcchhHHhhccCC
Q 009286 155 ELYYKISEKSKNLAFPAGICPTVAVGGHLSGGGFGYIMRKYGL-GADQVIDAHLVDVNGRILDRKSMGEDLFWAIRGGGA 233 (538)
Q Consensus 155 ~l~~~l~~~g~~l~~~~g~~~~vgvgG~~~gGg~g~~~~~~G~-~~d~v~~~~vV~~~G~i~~~~~~~~dlf~a~rG~~~ 233 (538)
+|.+++.++| ..|....+||+| ..||+.-++.+.||. +.|.+.++++++.+|++...+ +.||-|+||-+..
T Consensus 95 ~l~~~~~~~g-----l~GlE~l~gIPG-svGgav~mNaGAyG~Ei~d~~~~v~~ld~~G~~~~l~--~~el~f~YR~S~f 166 (291)
T COG0812 95 DLVRFALENG-----LSGLEFLAGIPG-SVGGAVIMNAGAYGVEISDVLVSVEVLDRDGEVRWLS--AEELGFGYRTSPF 166 (291)
T ss_pred HHHHHHHHcC-----CcchhhhcCCCc-ccchhhhccCcccccchheeEEEEEEEcCCCCEEEEE--HHHhCcccccCcC
Confidence 9999999998 578888899999 558888899999976 679999999999999999743 3599999998765
Q ss_pred CCe-EEEEEEEEEEEec
Q 009286 234 ASF-GVLVAWKVNLVDV 249 (538)
Q Consensus 234 g~~-Givt~~~~k~~p~ 249 (538)
..- .||++++||+.|-
T Consensus 167 ~~~~~vvl~v~f~L~~~ 183 (291)
T COG0812 167 KKEYLVVLSVEFKLTKG 183 (291)
T ss_pred CCCCEEEEEEEEEeCCC
Confidence 433 8999999999885
No 27
>PRK14650 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.65 E-value=4.6e-16 Score=155.55 Aligned_cols=163 Identities=14% Similarity=0.172 Sum_probs=139.4
Q ss_pred CCCCcEEEecCCHHHHHHHHHHHHHCCCeEEEEeCCCCCCCCccc-cCCCeEEEEccCCcceEEcCCCCeEEEcCCCCHH
Q 009286 76 YGRPQVIVTPFDVSQIQAVLKCAQKHDLLVKVRSGGHDHEGLSYL-SEVPFVMIDMINFSQIDVDAEAKSAWVGAGATLG 154 (538)
Q Consensus 76 ~~~p~~vv~P~t~~dv~~~v~~a~~~~~~v~~~ggGh~~~g~~~~-~~~~givIdl~~~~~i~id~~~~~v~v~~G~~~~ 154 (538)
......++.|+|.+|+++++++++++++|+.+.|+|+|....+.+ .+ +++|.+.+|+.++++. ..++|++|+.|.
T Consensus 30 GG~A~~~~~p~~~~eL~~~l~~~~~~~~p~~vlG~GSNlLv~D~g~~~--g~vi~~~~~~~i~~~~--~~v~a~AG~~~~ 105 (302)
T PRK14650 30 GGISKLFLTPKTIKDAEHIFKAAIEEKIKIFILGGGSNILINDEEEID--FPIIYTGHLNKIEIHD--NQIVAECGTNFE 105 (302)
T ss_pred CcEEEEEEecCCHHHHHHHHHHHHHcCCCEEEEeceeEEEEECCCccc--eEEEEECCcCcEEEeC--CEEEEEeCCcHH
Confidence 446778999999999999999999999999999999998877765 55 7899887799998764 479999999999
Q ss_pred HHHHHHHHhCCCceecCCCCCcccccccCcCCccCCCccccCc-hHHhhheeEEeecCceeeeccCCCcchhHHhhccCC
Q 009286 155 ELYYKISEKSKNLAFPAGICPTVAVGGHLSGGGFGYIMRKYGL-GADQVIDAHLVDVNGRILDRKSMGEDLFWAIRGGGA 233 (538)
Q Consensus 155 ~l~~~l~~~g~~l~~~~g~~~~vgvgG~~~gGg~g~~~~~~G~-~~d~v~~~~vV~~~G~i~~~~~~~~dlf~a~rG~~~ 233 (538)
+|.+++.++| ..|.+..+||+| +.||+.-++++.||. +.|.|.++++++.+|++++.. ..|+.|+||-+..
T Consensus 106 ~l~~~~~~~g-----l~GlE~l~gIPG-TVGGAv~mNAGayG~ei~d~l~sV~~~d~~g~~~~~~--~~e~~f~YR~S~f 177 (302)
T PRK14650 106 DLCKFALQNE-----LSGLEFIYGLPG-TLGGAIWMNARCFGNEISEILDKITFIDEKGKTICKK--FKKEEFKYKISPF 177 (302)
T ss_pred HHHHHHHHcC-----CchhhhhcCCCc-chhHHHHhhCCccccchheeEEEEEEEECCCCEEEEE--HHHcCcccccccC
Confidence 9999999998 578888999999 568888889999975 779999999999999998643 3599999997763
Q ss_pred CC-eEEEEEEEEEEEecC
Q 009286 234 AS-FGVLVAWKVNLVDVP 250 (538)
Q Consensus 234 g~-~Givt~~~~k~~p~~ 250 (538)
.. -.||++++|++.|..
T Consensus 178 ~~~~~iIl~a~f~L~~~~ 195 (302)
T PRK14650 178 QNKNTFILKATLNLKKGN 195 (302)
T ss_pred CCCCEEEEEEEEEEcCCC
Confidence 22 259999999998754
No 28
>PRK00046 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.64 E-value=6.7e-16 Score=156.69 Aligned_cols=162 Identities=17% Similarity=0.108 Sum_probs=137.4
Q ss_pred CCCCcEEEecCCHHHHHHHHHHHHHCCCeEEEEeCCCCCCCCccccCCCeEEEEccCCcceEEc-CCC--CeEEEcCCCC
Q 009286 76 YGRPQVIVTPFDVSQIQAVLKCAQKHDLLVKVRSGGHDHEGLSYLSEVPFVMIDMINFSQIDVD-AEA--KSAWVGAGAT 152 (538)
Q Consensus 76 ~~~p~~vv~P~t~~dv~~~v~~a~~~~~~v~~~ggGh~~~g~~~~~~~~givIdl~~~~~i~id-~~~--~~v~v~~G~~ 152 (538)
......++.|+|++|+++++++|+++++|+.+.|+|+|....+ +.+ |++|.+ +|+.++++ .+. ..++|++|+.
T Consensus 18 GG~A~~~~~p~~~~el~~~~~~~~~~~~p~~vlG~GSNlLv~D-~~~--g~vI~~-~~~~~~~~~~~~~~~~v~a~AG~~ 93 (334)
T PRK00046 18 DARARHLVEAESEEQLLEALADARAAGLPVLVLGGGSNVLFTE-DFD--GTVLLN-RIKGIEVLSEDDDAWYLHVGAGEN 93 (334)
T ss_pred CcEEeEEEeeCCHHHHHHHHHHHHHcCCCEEEEeceEEEEECC-CCC--EEEEEe-cCCceEEEecCCCeEEEEEEcCCc
Confidence 3467889999999999999999999999999999999988776 454 899988 48999773 222 3899999999
Q ss_pred HHHHHHHHHHhCCCceecCCCCCcccccccCcCCccCCCccccCc-hHHhhheeEEeecC-ceeeeccCCCcchhHHhhc
Q 009286 153 LGELYYKISEKSKNLAFPAGICPTVAVGGHLSGGGFGYIMRKYGL-GADQVIDAHLVDVN-GRILDRKSMGEDLFWAIRG 230 (538)
Q Consensus 153 ~~~l~~~l~~~g~~l~~~~g~~~~vgvgG~~~gGg~g~~~~~~G~-~~d~v~~~~vV~~~-G~i~~~~~~~~dlf~a~rG 230 (538)
|.+|.+++.++| ..|.+..+||+| +.||+.-++++.||. +.|.|.++++++.+ |++++.. ..|+.|+||-
T Consensus 94 ~~~l~~~~~~~g-----l~GlE~l~gIPG-TVGGAv~mNaGayG~ei~d~l~~V~v~d~~~g~~~~~~--~~e~~f~YR~ 165 (334)
T PRK00046 94 WHDLVLWTLQQG-----MPGLENLALIPG-TVGAAPIQNIGAYGVELKDVCDYVEALDLATGEFVRLS--AAECRFGYRD 165 (334)
T ss_pred HHHHHHHHHHcC-----chhhHHhcCCCc-chhHHHHhcCCcCcccHheeEEEEEEEECCCCcEEEEE--HHHcCccccc
Confidence 999999999998 578888999999 568888899999975 67999999999987 9988743 3599999998
Q ss_pred cCCCC----eEEEEEEEEEEEec
Q 009286 231 GGAAS----FGVLVAWKVNLVDV 249 (538)
Q Consensus 231 ~~~g~----~Givt~~~~k~~p~ 249 (538)
+.... --||++++|++.|.
T Consensus 166 S~f~~~~~~~~iVl~a~f~L~~~ 188 (334)
T PRK00046 166 SIFKHEYPDRYAITAVGFRLPKQ 188 (334)
T ss_pred ccCCCCCcCCEEEEEEEEEecCC
Confidence 75432 23999999999885
No 29
>PF08031 BBE: Berberine and berberine like ; InterPro: IPR012951 This domain is found in the berberine bridge and berberine bridge-like enzymes, which are involved in the biosynthesis of numerous isoquinoline alkaloids. They catalyse the transformation of the N-methyl group of (S)-reticuline into the C-8 berberine bridge carbon of (S)-scoulerine [].; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 2IPI_A 2Y3S_A 2Y3R_D 2Y08_B 2Y4G_A 3D2H_A 3FW9_A 3FW8_A 3FWA_A 3D2J_A ....
Probab=99.60 E-value=4e-16 Score=112.23 Aligned_cols=47 Identities=40% Similarity=0.718 Sum_probs=34.8
Q ss_pred ccccCCCccccCCCCCCCccchhhhhhhHHhhhcccHHHHHHhhhccCCCCCcccCCCCC
Q 009286 467 TYFNCKDIEIGRNNYGNNYTSVKEASIWGKKYFKNNFYRLVDVKTKVDPGNFFRNEQSIP 526 (538)
Q Consensus 467 ~Y~Ny~d~~~~~~~~~~~~~~~~~~~~~~~~Yyg~n~~RL~~IK~kyDP~nvF~~~qsI~ 526 (538)
+|+||+|.+++. +.|.+.|||+|++||++||++|||+|||+++|+||
T Consensus 1 aY~Ny~d~~~~~-------------~~~~~~yyg~n~~rL~~iK~~yDP~n~F~~~q~I~ 47 (47)
T PF08031_consen 1 AYVNYPDPDLPG-------------DDWQEAYYGENYDRLRAIKRKYDPDNVFRFPQSIP 47 (47)
T ss_dssp --TTS--GGGGS-------------SHHHHHHHGGGHHHHHHHHHHH-TT-TS-STTS--
T ss_pred CcccCCCCccch-------------hHHHHHHhchhHHHHHHHHHHhCccceeCCCCCcC
Confidence 699999998751 25999999999999999999999999999999996
No 30
>PRK14648 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.60 E-value=4.6e-15 Score=150.36 Aligned_cols=167 Identities=19% Similarity=0.213 Sum_probs=136.6
Q ss_pred CCCCcEEEecCCHHHHHHHHHHHHHCCCeEEEEeCCCCCCCCccccCCCeEEEEccCCcceEEc---CCCCeEEEcCCCC
Q 009286 76 YGRPQVIVTPFDVSQIQAVLKCAQKHDLLVKVRSGGHDHEGLSYLSEVPFVMIDMINFSQIDVD---AEAKSAWVGAGAT 152 (538)
Q Consensus 76 ~~~p~~vv~P~t~~dv~~~v~~a~~~~~~v~~~ggGh~~~g~~~~~~~~givIdl~~~~~i~id---~~~~~v~v~~G~~ 152 (538)
......++.|+|.+|+++++++++++++|+.+.|+|+|....+.+.+ |+||.+++|+.+++. .+...++|++|+.
T Consensus 27 GG~A~~~~~p~s~~el~~~l~~~~~~~~p~~iLG~GSNlL~~D~g~~--G~VI~l~~~~~i~i~~~~~~~~~v~agAG~~ 104 (354)
T PRK14648 27 GGAAQFWAEPRSCTQLRALIEEAQRARIPLSLIGGGSNVLIADEGVP--GLMLSLRRFRSLHTQTQRDGSVLVHAGAGLP 104 (354)
T ss_pred CcEEEEEEeeCCHHHHHHHHHHHHHcCCCEEEEeceeEEEEeCCCcc--EEEEEeCCcCceEEeeccCCcEEEEEEeCCc
Confidence 44677899999999999999999999999999999999888776665 899999779988752 2224799999999
Q ss_pred HHHHHHHHHHhCCCceecCCCCCcccccccCcCCccCCCccccCc-hHHhhheeEEe--------------------ecC
Q 009286 153 LGELYYKISEKSKNLAFPAGICPTVAVGGHLSGGGFGYIMRKYGL-GADQVIDAHLV--------------------DVN 211 (538)
Q Consensus 153 ~~~l~~~l~~~g~~l~~~~g~~~~vgvgG~~~gGg~g~~~~~~G~-~~d~v~~~~vV--------------------~~~ 211 (538)
|.+|.+++.++| ..|.+..+||+| +.||+.-++.+.||. +.|.|.+++++ +.+
T Consensus 105 ~~~Lv~~~~~~g-----l~GlE~laGIPG-TVGGAv~mNAGAyG~ei~d~l~~V~v~d~~~~~~~~~~~~~~~~~~~~~~ 178 (354)
T PRK14648 105 VAALLAFCAHHA-----LRGLETFAGLPG-SVGGAAYMNARCYGRAIADCFHSARTLVLHPVRSRAKELPEVRKNAQDKR 178 (354)
T ss_pred HHHHHHHHHHcC-----CcchhhhcCCCc-chhhHhhhcCCccceEhhheEEEEEEEeccCcccccccccccccccccCC
Confidence 999999999998 578888999999 558888889999975 77999999999 456
Q ss_pred ceeee-----------ccCCCcchhHHhhccCCCC---------eEEEEEEEEEEEecC
Q 009286 212 GRILD-----------RKSMGEDLFWAIRGGGAAS---------FGVLVAWKVNLVDVP 250 (538)
Q Consensus 212 G~i~~-----------~~~~~~dlf~a~rG~~~g~---------~Givt~~~~k~~p~~ 250 (538)
|++.. ..-.+.|+.|+||-+.... --||++++|++.|..
T Consensus 179 g~~~~~~~~~~~~~~~~~~~~~e~~f~YR~S~f~~~~~~~~~~~~~iIl~v~f~L~~~~ 237 (354)
T PRK14648 179 GECLGLDGGPFTCSSFQTVFARAGDWGYKRSPFQSPHGVELHAGRRLILSLCVRLTPGN 237 (354)
T ss_pred CceecccccccccccceEecHHHcCccCCcccCCCCccccccCCCEEEEEEEEEEcCCC
Confidence 77620 0112468999999876432 239999999998753
No 31
>KOG1262 consensus FAD-binding protein DIMINUTO [General function prediction only]
Probab=99.59 E-value=3.1e-15 Score=148.32 Aligned_cols=166 Identities=22% Similarity=0.231 Sum_probs=128.5
Q ss_pred CHHHHHHHHHHHHHCCCeEEEEeCCCCCCCCccccC---CCeEEEEccCCcce-EEcCCCCeEEEcCCCCHHHHHHHHHH
Q 009286 87 DVSQIQAVLKCAQKHDLLVKVRSGGHDHEGLSYLSE---VPFVMIDMINFSQI-DVDAEAKSAWVGAGATLGELYYKISE 162 (538)
Q Consensus 87 t~~dv~~~v~~a~~~~~~v~~~ggGh~~~g~~~~~~---~~givIdl~~~~~i-~id~~~~~v~v~~G~~~~~l~~~l~~ 162 (538)
.+.+||+-|+..+..+-+-.+..+.-+|...|.... ....-|++..|..| ++|.++.+|+|+|+++++|+.++|-+
T Consensus 62 rVkkIqkqlkew~d~s~k~~lctaRp~Wltvs~r~~dykk~h~~v~id~l~dILeld~ekmtvrvEP~Vtmgqis~~lip 141 (543)
T KOG1262|consen 62 RVKKIQKQLKEWLDDSEKKPLCTARPGWLTVSTRFFDYKKCHHQVPIDELHDILELDEEKMTVRVEPLVTMGQISKFLIP 141 (543)
T ss_pred HHHHHHHHHHhhccccccCcccccCCCeEEEEEecchhhhhcccCCHHHHhHHHhcchhcceEEecCCccHHHHHHHhcc
Confidence 345555555554444443333444445544333221 12345666655566 99999999999999999999999999
Q ss_pred hCCCceecCCCCCcccccccCcCCccCCCccccCchHHhhheeEEeecCceeee--ccCCCcchhHHhhccCCCCeEEEE
Q 009286 163 KSKNLAFPAGICPTVAVGGHLSGGGFGYIMRKYGLGADQVIDAHLVDVNGRILD--RKSMGEDLFWAIRGGGAASFGVLV 240 (538)
Q Consensus 163 ~g~~l~~~~g~~~~vgvgG~~~gGg~g~~~~~~G~~~d~v~~~~vV~~~G~i~~--~~~~~~dlf~a~rG~~~g~~Givt 240 (538)
.|+.|++. ......++||++.|-|+-..|.+||+..+.+.+.|||++||++++ .+.+++|||+|+-.+. |++|..+
T Consensus 142 ~g~tLaV~-~EldDlTvGGLinG~Gies~ShkyGlfq~~~~aYEvVladGelv~~t~dne~sdLfyaiPWSq-GTlgfLV 219 (543)
T KOG1262|consen 142 KGYTLAVL-PELDDLTVGGLINGVGIESSSHKYGLFQHICTAYEVVLADGELVRVTPDNEHSDLFYAIPWSQ-GTLGFLV 219 (543)
T ss_pred CCceeeee-cccccceecceeeecccccccchhhhHHhhhheeEEEecCCeEEEecCCcccCceEEEccccc-Cchheee
Confidence 98766543 444678999999999999999999999999999999999999997 4557899999999999 9999999
Q ss_pred EEEEEEEecCCeEE
Q 009286 241 AWKVNLVDVPSIVT 254 (538)
Q Consensus 241 ~~~~k~~p~~~~~~ 254 (538)
.+|+|+.|..+.+.
T Consensus 220 aatiriIkvK~Yvk 233 (543)
T KOG1262|consen 220 AATIRIIKVKKYVK 233 (543)
T ss_pred eeEEEEEeccceEE
Confidence 99999999987543
No 32
>PRK14651 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.48 E-value=3.7e-13 Score=132.89 Aligned_cols=149 Identities=18% Similarity=0.196 Sum_probs=123.1
Q ss_pred CCcEEEecCCHHHHHHHHHHHHHCCCeEEEEeCCCCCCCCccccCCCeEEEEccC-CcceEEcCCCCeEEEcCCCCHHHH
Q 009286 78 RPQVIVTPFDVSQIQAVLKCAQKHDLLVKVRSGGHDHEGLSYLSEVPFVMIDMIN-FSQIDVDAEAKSAWVGAGATLGEL 156 (538)
Q Consensus 78 ~p~~vv~P~t~~dv~~~v~~a~~~~~~v~~~ggGh~~~g~~~~~~~~givIdl~~-~~~i~id~~~~~v~v~~G~~~~~l 156 (538)
...+++ |+|.+|+++++ ++|+.+.|+|+|....+.+.+ +++|.+.+ ++.++++. +|++|+.|.+|
T Consensus 20 ~A~~~~-p~~~~~l~~~~------~~p~~vlG~GSNlL~~D~g~~--g~vI~l~~~~~~~~~~~-----~a~AG~~~~~l 85 (273)
T PRK14651 20 PAELWT-VETHEQLAEAT------EAPYRVLGGGSNLLVSDAGVP--ERVIRLGGEFAEWDLDG-----WVGGGVPLPGL 85 (273)
T ss_pred eEEEEe-cCCHHHHHHHH------CCCeEEEeceeEEEEcCCCcc--eEEEEECCcceeEeECC-----EEECCCcHHHH
Confidence 445566 99999999988 599999999999887776665 89998865 66665532 69999999999
Q ss_pred HHHHHHhCCCceecCCCCCcccccccCcCCccCCCccccCc-hHHhhheeEEeecCceeeeccCCCcchhHHhhccCCCC
Q 009286 157 YYKISEKSKNLAFPAGICPTVAVGGHLSGGGFGYIMRKYGL-GADQVIDAHLVDVNGRILDRKSMGEDLFWAIRGGGAAS 235 (538)
Q Consensus 157 ~~~l~~~g~~l~~~~g~~~~vgvgG~~~gGg~g~~~~~~G~-~~d~v~~~~vV~~~G~i~~~~~~~~dlf~a~rG~~~g~ 235 (538)
.+++.++| ..|.+..+||+| +.||+.-++++.||. +.|.|.++++++ +|++++.. +.|+.|+||.+....
T Consensus 86 ~~~~~~~g-----l~GlE~l~gIPG-TVGGAv~mNaGayG~ei~d~l~~V~~~~-~g~~~~~~--~~e~~f~YR~S~~~~ 156 (273)
T PRK14651 86 VRRAARLG-----LSGLEGLVGIPA-QVGGAVKMNAGTRFGEMADALHTVEIVH-DGGFHQYS--PDELGFGYRHSGLPP 156 (273)
T ss_pred HHHHHHCC-----CcchhhhcCCCc-chhhHHHhhCCccccChheeEEEEEEEE-CCCEEEEE--HHHccccccccCCCC
Confidence 99999998 478888999999 568888889999975 779999999997 89988743 359999999775433
Q ss_pred eEEEEEEEEEEEec
Q 009286 236 FGVLVAWKVNLVDV 249 (538)
Q Consensus 236 ~Givt~~~~k~~p~ 249 (538)
--||++++|++.|.
T Consensus 157 ~~iIl~a~f~l~~~ 170 (273)
T PRK14651 157 GHVVTRVRLKLRPS 170 (273)
T ss_pred CEEEEEEEEEECCC
Confidence 24999999999875
No 33
>PRK13904 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.17 E-value=1.9e-10 Score=112.61 Aligned_cols=142 Identities=14% Similarity=0.108 Sum_probs=114.7
Q ss_pred CCcEEEecCCHHHHHHHHHHHHHCCCeEEEEeCCCCCCCCccccCCCeEEEEccCCcceEEcCCCCeEEEcCCCCHHHHH
Q 009286 78 RPQVIVTPFDVSQIQAVLKCAQKHDLLVKVRSGGHDHEGLSYLSEVPFVMIDMINFSQIDVDAEAKSAWVGAGATLGELY 157 (538)
Q Consensus 78 ~p~~vv~P~t~~dv~~~v~~a~~~~~~v~~~ggGh~~~g~~~~~~~~givIdl~~~~~i~id~~~~~v~v~~G~~~~~l~ 157 (538)
....++.|++.+ + ++|+.+.|+|+|....+.+.+ +++ -+++|+.++++. ..++|++|+.|.+|.
T Consensus 18 ~A~~~~~~~~~~-l----------~~p~~vlG~GSNlLv~D~g~~--~vv-~~~~~~~~~~~~--~~v~~~AG~~l~~l~ 81 (257)
T PRK13904 18 PLEVLVLEEIDD-F----------SQDGQIIGGANNLLISPNPKN--LAI-LGKNFDYIKIDG--ECLEIGGATKSGKIF 81 (257)
T ss_pred eEEEEEEechhh-h----------CCCeEEEeceeEEEEecCCcc--EEE-EccCcCeEEEeC--CEEEEEcCCcHHHHH
Confidence 556677788877 5 799999999999887766533 444 445688888754 479999999999999
Q ss_pred HHHHHhCCCceecCCCCCcccccccCcCCccCCCccccCc-hHHhhheeEEeecCceeeeccCCCcchhHHhhccCCCCe
Q 009286 158 YKISEKSKNLAFPAGICPTVAVGGHLSGGGFGYIMRKYGL-GADQVIDAHLVDVNGRILDRKSMGEDLFWAIRGGGAASF 236 (538)
Q Consensus 158 ~~l~~~g~~l~~~~g~~~~vgvgG~~~gGg~g~~~~~~G~-~~d~v~~~~vV~~~G~i~~~~~~~~dlf~a~rG~~~g~~ 236 (538)
+++.++| ..|.+..+||+| +.||+.-++++.||. +.|.|.++++++ |+ + ...|+.|+||-+...
T Consensus 82 ~~~~~~g-----l~GlE~l~gIPG-tVGGAv~mNaGa~g~ei~d~l~~V~~~~--~~-~----~~~e~~f~YR~S~~~-- 146 (257)
T PRK13904 82 NYAKKNN-----LGGFEFLGKLPG-TLGGLVKMNAGLKEYEISNNLESICTNG--GW-I----EKEDIGFGYRSSGIN-- 146 (257)
T ss_pred HHHHHCC-----CchhhhhcCCCc-cHHHHHHhcCCcCccchheeEEEEEEEe--eE-E----eHHHCcccccCcCCC--
Confidence 9999998 578888999999 558888889999975 679999999998 42 2 246999999977532
Q ss_pred EEEEEEEEEEEecC
Q 009286 237 GVLVAWKVNLVDVP 250 (538)
Q Consensus 237 Givt~~~~k~~p~~ 250 (538)
.||++++||+.|..
T Consensus 147 ~iIl~a~f~l~~~~ 160 (257)
T PRK13904 147 GVILEARFKKTHGF 160 (257)
T ss_pred cEEEEEEEEECCCC
Confidence 49999999998854
No 34
>PF00941 FAD_binding_5: FAD binding domain in molybdopterin dehydrogenase; InterPro: IPR002346 Oxidoreductases, that also bind molybdopterin, have essentially no similarity outside this common domain. They include aldehyde oxidase (1.2.3.1 from EC), that converts an aldehyde and water to an acid and hydrogen peroxide, and xanthine dehydrogenase (1.1.1.204 from EC), that converts xanthine to urate. These enzymes require molybdopterin and FAD as cofactors and have and two 2FE-2S clusters. Another enzyme that contains this domain is the Pseudomonas thermocarboxydovorans carbon monoxide oxygenase.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2E1Q_C 2CKJ_A 3EUB_K 3NS1_K 3NVV_B 1FO4_B 3AM9_A 3AX7_B 3BDJ_A 3ETR_B ....
Probab=95.32 E-value=0.022 Score=52.95 Aligned_cols=77 Identities=21% Similarity=0.256 Sum_probs=52.6
Q ss_pred CcEEEecCCHHHHHHHHHHHHHCCCeEEEEeCCCCCCCCc-cccCCCeEEEEccCCcce-EEcCCCCeEEEcCCCCHHHH
Q 009286 79 PQVIVTPFDVSQIQAVLKCAQKHDLLVKVRSGGHDHEGLS-YLSEVPFVMIDMINFSQI-DVDAEAKSAWVGAGATLGEL 156 (538)
Q Consensus 79 p~~vv~P~t~~dv~~~v~~a~~~~~~v~~~ggGh~~~g~~-~~~~~~givIdl~~~~~i-~id~~~~~v~v~~G~~~~~l 156 (538)
+..+++|+|.+|+.++++ .+-...+.+||++....- .+......+||++++... .|..+++.+++|+++++.++
T Consensus 2 ~~~~~~P~sl~ea~~ll~----~~~~a~~vaGgT~l~~~~~~~~~~~~~lIdl~~i~eL~~I~~~~~~l~IGA~vtl~~l 77 (171)
T PF00941_consen 2 PFEYFRPKSLEEALELLA----KGPDARIVAGGTDLGVQMREGILSPDVLIDLSRIPELNGISEDDGGLRIGAAVTLSEL 77 (171)
T ss_dssp S-EEEE-SSHHHHHHHHH----HGTTEEEESS-TTHHHHHHTTS---SEEEEGTTSGGGG-EEEETSEEEEETTSBHHHH
T ss_pred CeEEEccCCHHHHHHHHh----cCCCCEEEeCCCccchhcccCccccceEEEeEEecccccEEEeccEEEECCCccHHHH
Confidence 456789999999999998 223578999999853211 111112589999987554 44445789999999999999
Q ss_pred HHH
Q 009286 157 YYK 159 (538)
Q Consensus 157 ~~~ 159 (538)
.+.
T Consensus 78 ~~~ 80 (171)
T PF00941_consen 78 EES 80 (171)
T ss_dssp HHH
T ss_pred hhc
Confidence 876
No 35
>PRK09799 putative oxidoreductase; Provisional
Probab=94.50 E-value=0.12 Score=51.32 Aligned_cols=144 Identities=17% Similarity=0.111 Sum_probs=84.0
Q ss_pred EEEecCCHHHHHHHHHHHHHCCCeEEEEeCCCCCCCCccccCCCeEEEEccCCcce-EEcCCCCeEEEcCCCCHHHHHHH
Q 009286 81 VIVTPFDVSQIQAVLKCAQKHDLLVKVRSGGHDHEGLSYLSEVPFVMIDMINFSQI-DVDAEAKSAWVGAGATLGELYYK 159 (538)
Q Consensus 81 ~vv~P~t~~dv~~~v~~a~~~~~~v~~~ggGh~~~g~~~~~~~~givIdl~~~~~i-~id~~~~~v~v~~G~~~~~l~~~ 159 (538)
.++.|+|.+|..++++. ++-...+.+||++..... ......++||++++ .. .+..+.+.+++|+++++.++.+.
T Consensus 4 ~y~~P~sl~Ea~~ll~~---~~~~a~ilAGGT~L~~~~-~~~~~~~lIdi~~i-eL~~I~~~~~~l~IGA~vT~~~l~~~ 78 (258)
T PRK09799 4 QFFRPDSVEQALELKRR---YQDEAVWFAGGSKLNATP-TRTDKKIAISLQDL-ELDWIEWDNGALRIGAMSRLQPLRDA 78 (258)
T ss_pred cEeCCCCHHHHHHHHHh---CCCCCEEEecCCChHhhh-CCCCCCEEEEcCCC-CCCeEEecCCEEEEccCCcHHHHHhC
Confidence 46789999999888763 433467899999874221 11123688999976 54 45556789999999999999864
Q ss_pred HHHh-CCC--ceec--CCCCCcccccccCcCCccCCCccccCchH--HhhheeEEeecCceeeeccCCCcchhHHhhccC
Q 009286 160 ISEK-SKN--LAFP--AGICPTVAVGGHLSGGGFGYIMRKYGLGA--DQVIDAHLVDVNGRILDRKSMGEDLFWAIRGGG 232 (538)
Q Consensus 160 l~~~-g~~--l~~~--~g~~~~vgvgG~~~gGg~g~~~~~~G~~~--d~v~~~~vV~~~G~i~~~~~~~~dlf~a~rG~~ 232 (538)
..-. .+. .... ...-+..++||.+..+-- .+... =..++.+|+..+++.+.. .|+| .|..
T Consensus 79 ~~~~~~L~~a~~~vas~qIRN~aTiGGNl~~a~p------~sD~~p~LlAldA~v~l~~~r~vpl----~~f~---~g~~ 145 (258)
T PRK09799 79 RFIPAALREALGFVYSRHLRNQSTIGGEIAARQE------ESVLLPVLLALDAELVFGNGETLSI----EDYL---ACPC 145 (258)
T ss_pred cccHHHHHHHHHHhCCHHHhccchhHHHhhcCCc------cHHHHHHHHHcCCEEEEecCcEEeH----HHhc---CCCC
Confidence 2110 000 0001 122255678887764321 12111 123567777777744422 2433 2222
Q ss_pred CCCeEEEEEEEEE
Q 009286 233 AASFGVLVAWKVN 245 (538)
Q Consensus 233 ~g~~Givt~~~~k 245 (538)
=.|||++.+.
T Consensus 146 ---~Eil~~I~iP 155 (258)
T PRK09799 146 ---DRLLTEIIIP 155 (258)
T ss_pred ---CcEEEEEEcC
Confidence 2488888664
No 36
>PRK09971 xanthine dehydrogenase subunit XdhB; Provisional
Probab=94.08 E-value=0.11 Score=52.61 Aligned_cols=102 Identities=20% Similarity=0.268 Sum_probs=63.5
Q ss_pred EEEecCCHHHHHHHHHHHHHCCCeEEEEeCCCCCC-CCccccCCCeEEEEccCCcce-EEc-CCCCeEEEcCCCCHHHHH
Q 009286 81 VIVTPFDVSQIQAVLKCAQKHDLLVKVRSGGHDHE-GLSYLSEVPFVMIDMINFSQI-DVD-AEAKSAWVGAGATLGELY 157 (538)
Q Consensus 81 ~vv~P~t~~dv~~~v~~a~~~~~~v~~~ggGh~~~-g~~~~~~~~givIdl~~~~~i-~id-~~~~~v~v~~G~~~~~l~ 157 (538)
.++.|+|.+|..++++. +. ...+.+||++.. ....+......+||++++... .|. .+++.+++|+++++.++.
T Consensus 6 ~~~~P~sl~Ea~~ll~~---~~-~a~ivaGGTdl~~~~~~~~~~p~~lIdl~~i~eL~~I~~~~~~~l~IGA~vt~~~l~ 81 (291)
T PRK09971 6 EYHEAATLEEAIELLAD---NP-QAKLIAGGTDVLIQLHHHNDRYRHLVSIHNIAELRGITLAEDGSIRIGAATTFTQII 81 (291)
T ss_pred ceeCCCCHHHHHHHHHh---CC-CCEEEeccchHHHHHhCCCCCCCeEEEcCCChhhhCeEecCCCEEEEEeCCcHHHHh
Confidence 57889999999988764 22 357899999863 211222223688999986554 344 234679999999999997
Q ss_pred H--HHHHhCCCce-----e-cCCCCCcccccccCcCC
Q 009286 158 Y--KISEKSKNLA-----F-PAGICPTVAVGGHLSGG 186 (538)
Q Consensus 158 ~--~l~~~g~~l~-----~-~~g~~~~vgvgG~~~gG 186 (538)
+ .+...-..|. + .+..-+..++||.+..+
T Consensus 82 ~~~~i~~~~p~L~~a~~~ia~~qIRN~aTiGGNi~~a 118 (291)
T PRK09971 82 EDPIIQKHLPALAEAAVSIGGPQIRNVATIGGNICNG 118 (291)
T ss_pred cChHHHHHhHHHHHHHHHhCCHHHhcceecccccccC
Confidence 5 2211100000 0 12233566788888654
No 37
>TIGR03312 Se_sel_red_FAD probable selenate reductase, FAD-binding subunit. This protein is suggested by Bebien, et al., to be the FAD-binding subunit of a molydbopterin-containing selenate reductase. Our comparative genomics suggests it to be a subunit of a selenium-dependent molybdenum hydroxylase for an unknown substrate.
Probab=93.32 E-value=0.26 Score=48.96 Aligned_cols=142 Identities=17% Similarity=0.182 Sum_probs=80.8
Q ss_pred EEecCCHHHHHHHHHHHHHCCCeEEEEeCCCCCCCCccccCCCeEEEEccCCcce-EEcCCCCeEEEcCCCCHHHHHHH-
Q 009286 82 IVTPFDVSQIQAVLKCAQKHDLLVKVRSGGHDHEGLSYLSEVPFVMIDMINFSQI-DVDAEAKSAWVGAGATLGELYYK- 159 (538)
Q Consensus 82 vv~P~t~~dv~~~v~~a~~~~~~v~~~ggGh~~~g~~~~~~~~givIdl~~~~~i-~id~~~~~v~v~~G~~~~~l~~~- 159 (538)
++.|+|.+|..++++. ++-.-.+.+||++....-. .....++||++++ .. .|..+.+.+++|+++++.++.+.
T Consensus 4 y~~P~sl~Ea~~ll~~---~~~~a~~lAGGTdL~~~~~-~~~~~~lIdl~~i-eL~~I~~~~~~l~IGA~~t~~~l~~~~ 78 (257)
T TIGR03312 4 FFRPESTIQALELKKR---HTGVAVWFAGGSKLNATPT-RTDKKVAISLDKL-ALDKIELQGGALHIGAMCHLQSLIDNE 78 (257)
T ss_pred eECCCCHHHHHHHHHh---CCCCCEEEecCcchhhhhc-ccCCCEEEEcCCC-CCCcEEecCCEEEEEeCCcHHHHHhCc
Confidence 5789999999887663 3323577899999752211 1112588999876 44 44455679999999999998752
Q ss_pred -----HHHhCCCceecCCCCCcccccccCcCCccCCCccccCc--hHHhhheeEEeecCceeeeccCCCcchhHHhhccC
Q 009286 160 -----ISEKSKNLAFPAGICPTVAVGGHLSGGGFGYIMRKYGL--GADQVIDAHLVDVNGRILDRKSMGEDLFWAIRGGG 232 (538)
Q Consensus 160 -----l~~~g~~l~~~~g~~~~vgvgG~~~gGg~g~~~~~~G~--~~d~v~~~~vV~~~G~i~~~~~~~~dlf~a~rG~~ 232 (538)
|.+.- ...-....-+..++||.+..+-- .+. ..=..++.+|+..+++.+.. .|+|- |..
T Consensus 79 ~~~~~L~~aa-~~va~~qIRN~gTlGGNl~~a~p------~~D~~~~LlaldA~v~l~~~r~vp~----~dF~~---g~~ 144 (257)
T TIGR03312 79 LTPAALKEAL-GFVYSRHIRNQATIGGEIAAFQS------ESLLLPVLLALKATVVLANASQMDI----EDYLA---SEQ 144 (257)
T ss_pred chHHHHHHHH-HHhCCHHHhccccHHHHhhcCCC------chHHHHHHHHcCCEEEEecCcEEeH----HHhcC---CCC
Confidence 22210 00001222355678887764431 121 11233556666665543321 24332 222
Q ss_pred CCCeEEEEEEEEE
Q 009286 233 AASFGVLVAWKVN 245 (538)
Q Consensus 233 ~g~~Givt~~~~k 245 (538)
+ -+|+++.+.
T Consensus 145 -~--Ell~~V~iP 154 (257)
T TIGR03312 145 -R--ELIVEVIIP 154 (257)
T ss_pred -C--cEEEEEEcC
Confidence 2 388888664
No 38
>PF09265 Cytokin-bind: Cytokinin dehydrogenase 1, FAD and cytokinin binding; InterPro: IPR015345 This domain adopts an alpha+beta sandwich structure with an antiparallel beta-sheet, in a ferredoxin-like fold. It is predominantly found in plant cytokinin dehydrogenase 1, where it is capable of binding both FAD and cytokinin substrates. The substrate displays a 'plug-into-socket' binding mode that seals the catalytic site and precisely positions the carbon atom undergoing oxidation in close contact with the reactive locus of the flavin []. ; GO: 0019139 cytokinin dehydrogenase activity, 0050660 flavin adenine dinucleotide binding, 0009690 cytokinin metabolic process, 0055114 oxidation-reduction process; PDB: 2EXR_A 2Q4W_A 3S1E_A 1W1Q_A 2QPM_A 3C0P_A 3BW7_A 3S1C_A 1W1S_A 2QKN_A ....
Probab=92.71 E-value=0.18 Score=50.37 Aligned_cols=33 Identities=27% Similarity=0.515 Sum_probs=24.6
Q ss_pred hhhHHhhhcccHHHHHHhhhccCCCCCcccCCCC
Q 009286 492 SIWGKKYFKNNFYRLVDVKTKVDPGNFFRNEQSI 525 (538)
Q Consensus 492 ~~~~~~Yyg~n~~RL~~IK~kyDP~nvF~~~qsI 525 (538)
+.|. .-||+.++|+++.|++|||.+++.--|.|
T Consensus 248 ~dW~-~HFG~~W~~f~~~K~~yDP~~IL~PGq~I 280 (281)
T PF09265_consen 248 EDWR-RHFGPKWERFVERKRRYDPKAILAPGQGI 280 (281)
T ss_dssp HHHH-HHHGHHHHHHHHHHHHH-TT--B-GGG-S
T ss_pred HHHH-HHhchHHHHHHHHHHhCCchhhcCCCCCC
Confidence 4585 67799999999999999999999888776
No 39
>TIGR02963 xanthine_xdhA xanthine dehydrogenase, small subunit. Members of this protein family are the small subunit (or, in eukaryotes, the N-terminal domain) of xanthine dehydrogenase, an enzyme of purine catabolism via urate. The small subunit contains both an FAD and a 2Fe-2S cofactor. Aldehyde oxidase (retinal oxidase) appears to have arisen as a neofunctionalization among xanthine dehydrogenases in eukaryotes and
Probab=92.42 E-value=0.31 Score=52.69 Aligned_cols=104 Identities=15% Similarity=0.232 Sum_probs=67.7
Q ss_pred CcEEEecCCHHHHHHHHHHHHHCCCeEEEEeCCCCCCC-CccccCCCeEEEEccCCcce-EEcCCCCeEEEcCCCCHHHH
Q 009286 79 PQVIVTPFDVSQIQAVLKCAQKHDLLVKVRSGGHDHEG-LSYLSEVPFVMIDMINFSQI-DVDAEAKSAWVGAGATLGEL 156 (538)
Q Consensus 79 p~~vv~P~t~~dv~~~v~~a~~~~~~v~~~ggGh~~~g-~~~~~~~~givIdl~~~~~i-~id~~~~~v~v~~G~~~~~l 156 (538)
...++.|+|.+|+.++++. +. ...+.+||++... ..........+||++++... .+..+++.+++|+++++.|+
T Consensus 192 ~~~~~~P~sl~Ea~~ll~~---~~-~a~lvAGGTdl~~~~~~~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vT~~el 267 (467)
T TIGR02963 192 GERFIAPTTLDDLAALKAA---HP-DARIVAGSTDVGLWVTKQMRDLPDVIYVGQVAELKRIEETDDGIEIGAAVTLTDA 267 (467)
T ss_pred CceEECCCCHHHHHHHHhh---CC-CCEEEecCcchHHHHhcCCCCCCeEEECCCChhhccEEEcCCEEEEecCCcHHHH
Confidence 4568999999999988764 22 3578999998642 11111123688999986554 34445678999999999999
Q ss_pred HHHHHHhCCCc----eec--CCCCCcccccccCcCC
Q 009286 157 YYKISEKSKNL----AFP--AGICPTVAVGGHLSGG 186 (538)
Q Consensus 157 ~~~l~~~g~~l----~~~--~g~~~~vgvgG~~~gG 186 (538)
.+.+.++-..+ ... ...-+..+|||.+..+
T Consensus 268 ~~~l~~~~p~L~~a~~~ias~qIRN~aTiGGNI~~a 303 (467)
T TIGR02963 268 YAALAKRYPELGELLRRFASLQIRNAGTLGGNIANG 303 (467)
T ss_pred HHHHHHHhHHHHHHHHHhCCHHHcCceecccccccC
Confidence 87665431000 001 1233566788887654
No 40
>TIGR03195 4hydrxCoA_B 4-hydroxybenzoyl-CoA reductase, beta subunit. This model represents the second largest chain, beta, of the enzyme 4-hydroxybenzoyl-CoA reductase. In species capable of degrading various aromatic compounds by way of benzoyl-CoA, this enzyme can convert 4-hydroxybenzoyl-CoA to benzoyl-CoA.
Probab=90.69 E-value=0.41 Score=49.07 Aligned_cols=75 Identities=23% Similarity=0.279 Sum_probs=51.7
Q ss_pred cEEEecCCHHHHHHHHHHHHHCCCeEEEEeCCCCCCC-CccccCCCeEEEEccCCcce-EEcCCCCeEEEcCCCCHHHHH
Q 009286 80 QVIVTPFDVSQIQAVLKCAQKHDLLVKVRSGGHDHEG-LSYLSEVPFVMIDMINFSQI-DVDAEAKSAWVGAGATLGELY 157 (538)
Q Consensus 80 ~~vv~P~t~~dv~~~v~~a~~~~~~v~~~ggGh~~~g-~~~~~~~~givIdl~~~~~i-~id~~~~~v~v~~G~~~~~l~ 157 (538)
-.++.|+|.+|..++++.. + .-.+.+||++... .-.+......+||++++... .|..+.+.+++|+++++.++.
T Consensus 5 f~~~~P~sl~eA~~ll~~~---~-~a~ivaGGTdl~~~~~~~~~~p~~lIdi~~I~eL~~I~~~~~~l~IGA~vT~~~l~ 80 (321)
T TIGR03195 5 FRTLRPASLADAVAALAAH---P-AARPLAGGTDLLPNLRRGLGQPETLVDLTGIDEIAQLSTLADGLRIGAGVTLAALA 80 (321)
T ss_pred ceEECCCCHHHHHHHHhhC---C-CCEEEEccchHHHHHhcccCCCCeEEECCCChhhccEEecCCEEEEeccCcHHHHh
Confidence 3578999999998887642 2 2468999997531 11111123688999976544 344456789999999999986
Q ss_pred H
Q 009286 158 Y 158 (538)
Q Consensus 158 ~ 158 (538)
+
T Consensus 81 ~ 81 (321)
T TIGR03195 81 E 81 (321)
T ss_pred h
Confidence 5
No 41
>PLN00107 FAD-dependent oxidoreductase; Provisional
Probab=89.46 E-value=0.82 Score=44.83 Aligned_cols=27 Identities=30% Similarity=0.490 Sum_probs=22.8
Q ss_pred HHhhhcccHHHHHHhhhccCCCCCcccCC
Q 009286 495 GKKYFKNNFYRLVDVKTKVDPGNFFRNEQ 523 (538)
Q Consensus 495 ~~~Yyg~n~~RL~~IK~kyDP~nvF~~~q 523 (538)
...| .++.+..+||+++||+|+|.++.
T Consensus 172 ~~lY--Pr~~dFlavR~~lDP~G~F~N~y 198 (257)
T PLN00107 172 IAKY--KKAGEFLKVKERLDPEGLFSSEW 198 (257)
T ss_pred HHHC--cCHHHHHHHHHHhCCCCccCCHH
Confidence 3445 68999999999999999998863
No 42
>PF02913 FAD-oxidase_C: FAD linked oxidases, C-terminal domain; InterPro: IPR004113 Some oxygen-dependent oxidoreductases are flavoproteins that contain a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. The region around the histidine that binds the FAD group is conserved in these enzymes (see IPR006093 from INTERPRO).; GO: 0003824 catalytic activity, 0050660 flavin adenine dinucleotide binding; PDB: 1WVE_B 1DII_B 1WVF_A 1DIQ_A 2UUU_B 2UUV_A 1W1M_A 1E8H_B 1E0Y_B 1DZN_B ....
Probab=89.08 E-value=0.5 Score=45.86 Aligned_cols=76 Identities=16% Similarity=0.202 Sum_probs=42.4
Q ss_pred ceEEEEEEEeCCchhhHHHHHHHHHHHHHcCccccCCCCcccccCCCccccCCCCCCCccchhhhhhhHHhhhcc-cHHH
Q 009286 427 KFHMMYFAAWSDGEESQKVLELDRKLYEYMTPYVTKNPRATYFNCKDIEIGRNNYGNNYTSVKEASIWGKKYFKN-NFYR 505 (538)
Q Consensus 427 ~~~i~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~Ny~d~~~~~~~~~~~~~~~~~~~~~~~~Yyg~-n~~R 505 (538)
..++.+...-.+++..+...++.+++++.+... +|.-.-...... ....|-...+++ .+.-
T Consensus 168 ~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----gG~is~eHG~G~-------------~k~~~~~~~~~~~~~~~ 229 (248)
T PF02913_consen 168 NLHLYILFDPRDPEEPERAEALWDELYELVLEL-----GGSISAEHGIGK-------------LKKPYLEEEYGPAALRL 229 (248)
T ss_dssp EEEEEEEEETTSHHHHHHHHHHHHHHHHHHHHT-----T-BBSSSSGGGH-------------HHHHHHCHHCHHHHHHH
T ss_pred eEEEEeecccchHHHHHHHHHHHHHHHHHHHhc-----ccccccccchhh-------------hhHHHHHHhcchHHHHH
Confidence 344444433345567777778888887766644 121111111110 112244445554 7999
Q ss_pred HHHhhhccCCCCCcc
Q 009286 506 LVDVKTKVDPGNFFR 520 (538)
Q Consensus 506 L~~IK~kyDP~nvF~ 520 (538)
+++||+.+||.|+++
T Consensus 230 ~~~iK~~~DP~~ilN 244 (248)
T PF02913_consen 230 MRAIKQAFDPNGILN 244 (248)
T ss_dssp HHHHHHHH-TTS-BS
T ss_pred HHHhhhccCCccCCC
Confidence 999999999999995
No 43
>TIGR03199 pucC xanthine dehydrogenase C subunit. This gene has been characterized in B. subtilis as the FAD binding-subunit of xanthine dehydrogenase (pucC), acting in conjunction with pucD, the molybdopterin-binding subunit and pucE, the FeS-binding subunit.
Probab=88.80 E-value=0.58 Score=46.67 Aligned_cols=70 Identities=14% Similarity=0.114 Sum_probs=49.9
Q ss_pred cCCHHHHHHHHHHHHHCCCeEEEEeCCCCCC-CCccc-cCCCeEEEEccCCcce-EEcCCCCeEEEcCCCCHHHHHH
Q 009286 85 PFDVSQIQAVLKCAQKHDLLVKVRSGGHDHE-GLSYL-SEVPFVMIDMINFSQI-DVDAEAKSAWVGAGATLGELYY 158 (538)
Q Consensus 85 P~t~~dv~~~v~~a~~~~~~v~~~ggGh~~~-g~~~~-~~~~givIdl~~~~~i-~id~~~~~v~v~~G~~~~~l~~ 158 (538)
|+|.+|+.++++.. . ...+.+||++.. ..... ......+||++++... .|..+++.+++|+++++.++.+
T Consensus 1 P~sl~ea~~ll~~~---~-~a~ivaGgT~l~~~~~~~~~~~~~~lIdi~~i~eL~~I~~~~~~l~IGA~vt~~~l~~ 73 (264)
T TIGR03199 1 PAALDEAWSLLEKA---P-DSTFVSGSTLLQLQWEKGTLPMKQHLVSLEGIDELKGISTSDTHVSIGALTTLNECRK 73 (264)
T ss_pred CCCHHHHHHHHHhC---C-CCEEEEccChHHHHHhcCcCCCCCeEEEcCCChhhCcEEecCCEEEEecCCcHHHHhh
Confidence 78889988888753 2 357899999863 21111 1112688999987665 5556678999999999999964
No 44
>PF04030 ALO: D-arabinono-1,4-lactone oxidase ; InterPro: IPR007173 This domain is specific to D-arabinono-1,4-lactone oxidase 1.1.3.37 from EC, which is involved in the final step of the D-erythroascorbic acid biosynthesis pathway [].; GO: 0003885 D-arabinono-1,4-lactone oxidase activity, 0055114 oxidation-reduction process, 0016020 membrane; PDB: 2VFU_A 2VFV_A 2VFT_A 2VFS_A 2VFR_A.
Probab=87.81 E-value=1.4 Score=43.64 Aligned_cols=27 Identities=30% Similarity=0.535 Sum_probs=19.0
Q ss_pred hHHhhhcccHHHHHHhhhccCCCCCcccC
Q 009286 494 WGKKYFKNNFYRLVDVKTKVDPGNFFRNE 522 (538)
Q Consensus 494 ~~~~Yyg~n~~RL~~IK~kyDP~nvF~~~ 522 (538)
..+.| .++++..++|+++||+|+|.++
T Consensus 228 l~~~Y--p~~~~F~~~r~~~DP~g~F~n~ 254 (259)
T PF04030_consen 228 LRKLY--PRLDDFLAVRKKLDPQGVFLND 254 (259)
T ss_dssp HHHT---TTHHHHHHHHHHH-TT-TT--H
T ss_pred HHHHC--cCHHHHHHHHHHhCCCCCCCCH
Confidence 44455 8999999999999999999874
No 45
>PLN02906 xanthine dehydrogenase
Probab=84.22 E-value=1.6 Score=53.29 Aligned_cols=79 Identities=13% Similarity=0.138 Sum_probs=56.3
Q ss_pred cEEEecCCHHHHHHHHHHHHHCCCeEEEEeCCCCCCC-CccccCCCeEEEEccCCcce-EEcCCCCeEEEcCCCCHHHHH
Q 009286 80 QVIVTPFDVSQIQAVLKCAQKHDLLVKVRSGGHDHEG-LSYLSEVPFVMIDMINFSQI-DVDAEAKSAWVGAGATLGELY 157 (538)
Q Consensus 80 ~~vv~P~t~~dv~~~v~~a~~~~~~v~~~ggGh~~~g-~~~~~~~~givIdl~~~~~i-~id~~~~~v~v~~G~~~~~l~ 157 (538)
...+.|+|.+|+.++++.. . ..++.+||++... .........++||++++..+ .|..+...++||+++++.++.
T Consensus 229 ~~~~~P~tl~ea~~ll~~~---~-~a~ivAGGTdl~~~~~~~~~~~~~lIdi~~I~eL~~I~~~~~~l~IGA~vT~~el~ 304 (1319)
T PLN02906 229 LTWYRPTSLQHLLELKAEY---P-DAKLVVGNTEVGIEMRFKNAQYPVLISPTHVPELNAIKVKDDGLEIGAAVRLSELQ 304 (1319)
T ss_pred ceEECcCCHHHHHHHHHhC---C-CCEEEEcCchhHHHhhhccCCCCeEEECCCChhhhcEEecCCEEEEecCCcHHHHH
Confidence 4588999999999877642 1 2577899998642 11222223689999986554 444556789999999999999
Q ss_pred HHHHH
Q 009286 158 YKISE 162 (538)
Q Consensus 158 ~~l~~ 162 (538)
+.|.+
T Consensus 305 ~~l~~ 309 (1319)
T PLN02906 305 NLFRK 309 (1319)
T ss_pred HHHHH
Confidence 86544
No 46
>PLN00192 aldehyde oxidase
Probab=82.53 E-value=3.1 Score=50.99 Aligned_cols=84 Identities=19% Similarity=0.218 Sum_probs=58.2
Q ss_pred CcEEEecCCHHHHHHHHHHHHHCCCeEEEEeCCCCCCCCccccCCCeEEEEccCCcce-EEcCCCCeEEEcCCCCHHHHH
Q 009286 79 PQVIVTPFDVSQIQAVLKCAQKHDLLVKVRSGGHDHEGLSYLSEVPFVMIDMINFSQI-DVDAEAKSAWVGAGATLGELY 157 (538)
Q Consensus 79 p~~vv~P~t~~dv~~~v~~a~~~~~~v~~~ggGh~~~g~~~~~~~~givIdl~~~~~i-~id~~~~~v~v~~G~~~~~l~ 157 (538)
....+.|+|.+|+.++++.....+-...+..||++..-.-. .....++||++++..+ .|..+.+.++||+++++.++.
T Consensus 233 ~~~~~~P~sl~ea~~ll~~~~~~~~~a~lvAGgTdl~~~k~-~~~p~~lIdi~~I~EL~~I~~~~~~l~IGA~vTl~el~ 311 (1344)
T PLN00192 233 RYRWYTPVSVEELQSLLESNNFDGVSVKLVVGNTGTGYYKD-EELYDKYIDIRHIPELSMIRRDEKGIEIGAVVTISKAI 311 (1344)
T ss_pred CceEECcCCHHHHHHHHHhCCCCCCCeEEEEeCCcceeeec-cCCCCeEEEcCCChhhhcEEecCCEEEEeecCcHHHHH
Confidence 45689999999999887642101123678899998643211 2222689999986554 444566799999999999998
Q ss_pred HHHHHh
Q 009286 158 YKISEK 163 (538)
Q Consensus 158 ~~l~~~ 163 (538)
+.+...
T Consensus 312 ~~l~~~ 317 (1344)
T PLN00192 312 EALREE 317 (1344)
T ss_pred HHHHhh
Confidence 776553
No 47
>TIGR02969 mam_aldehyde_ox aldehyde oxidase. Members of this family are mammalian aldehyde oxidase (EC 1.2.3.1) isozymes, closely related to xanthine dehydrogenase/oxidase.
Probab=79.99 E-value=3.9 Score=50.11 Aligned_cols=78 Identities=13% Similarity=0.154 Sum_probs=56.1
Q ss_pred cEEEecCCHHHHHHHHHHHHHCCCeEEEEeCCCCCCC-CccccCCCeEEEEccCCcce-EEcCCCCeEEEcCCCCHHHHH
Q 009286 80 QVIVTPFDVSQIQAVLKCAQKHDLLVKVRSGGHDHEG-LSYLSEVPFVMIDMINFSQI-DVDAEAKSAWVGAGATLGELY 157 (538)
Q Consensus 80 ~~vv~P~t~~dv~~~v~~a~~~~~~v~~~ggGh~~~g-~~~~~~~~givIdl~~~~~i-~id~~~~~v~v~~G~~~~~l~ 157 (538)
...+.|+|.+|+.++++.. . .-++..||++... ..........+||++++..+ .+..+.+.++||+++++.++.
T Consensus 237 ~~~~~P~tl~ea~~ll~~~---~-~a~lvAGGTdl~~~~k~~~~~~~~lIdi~~I~EL~~i~~~~~~l~IGA~vT~~el~ 312 (1330)
T TIGR02969 237 MMWISPVTLKELLEAKFKY---P-QAPVVMGNTSVGPEVKFKGVFHPVIISPDRIEELSVVNHTGDGLTLGAGLSLAQVK 312 (1330)
T ss_pred ceEECCCCHHHHHHHHHhC---C-CCEEEecCcchHHHhhhccCCCCeEEECCCChhhhcEEEcCCEEEEeccccHHHHH
Confidence 4588999999999887642 2 3567899999742 21111112578999986655 455566799999999999999
Q ss_pred HHHH
Q 009286 158 YKIS 161 (538)
Q Consensus 158 ~~l~ 161 (538)
+.|.
T Consensus 313 ~~l~ 316 (1330)
T TIGR02969 313 DILA 316 (1330)
T ss_pred HHHH
Confidence 8654
No 48
>COG4630 XdhA Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A [Nucleotide transport and metabolism]
Probab=76.21 E-value=5.8 Score=40.90 Aligned_cols=139 Identities=17% Similarity=0.147 Sum_probs=85.3
Q ss_pred CcEEEecCCHHHHHHHHHHHHHCCCeEEEEeCCCCCCCCccccC-CCeEEEEccCCcce-EEcCCCCeEEEcCCCCHHHH
Q 009286 79 PQVIVTPFDVSQIQAVLKCAQKHDLLVKVRSGGHDHEGLSYLSE-VPFVMIDMINFSQI-DVDAEAKSAWVGAGATLGEL 156 (538)
Q Consensus 79 p~~vv~P~t~~dv~~~v~~a~~~~~~v~~~ggGh~~~g~~~~~~-~~givIdl~~~~~i-~id~~~~~v~v~~G~~~~~l 156 (538)
-..++.|.+.+|...++.. +-..++..|++.+.-+..... +-..+|-..++..+ .|+..++.+++|+|+++.|.
T Consensus 203 ~~r~~~P~~l~D~a~l~aa----~P~AtivAGsTDvgLwVtk~mr~l~~vi~v~~l~eL~~i~~~~~~l~iGAgvt~t~a 278 (493)
T COG4630 203 DDRFIVPATLADFADLLAA----HPGATIVAGSTDVGLWVTKQMRDLNPVIFVGHLAELRRIEVSTGGLEIGAGVTYTQA 278 (493)
T ss_pred CceeEeeccHHHHHHHHhh----CCCCEEEecCcchhhHHHHHHhhcCCeEEecchhhhheeeecCCcEEEccCccHHHH
Confidence 4458889999999887743 345677888887653332211 11345666666665 66667899999999999999
Q ss_pred HHHHHHhCCCcee---cCCCC---CcccccccCcCCccCCCccccCch--HHhhheeEEeecCceeee-ccCCCcchhHH
Q 009286 157 YYKISEKSKNLAF---PAGIC---PTVAVGGHLSGGGFGYIMRKYGLG--ADQVIDAHLVDVNGRILD-RKSMGEDLFWA 227 (538)
Q Consensus 157 ~~~l~~~g~~l~~---~~g~~---~~vgvgG~~~gGg~g~~~~~~G~~--~d~v~~~~vV~~~G~i~~-~~~~~~dlf~a 227 (538)
++.|.++--.+.- --|.. +.-++||.+..|.- -|.+ .=..++.++++-.|+-.+ .. -.|+|-+
T Consensus 279 ~~~la~~~P~l~~L~~r~gg~qvRN~gTlGGNIangSP------IGDtPPaLIALgA~ltLr~g~~~RtlP--Le~~Fi~ 350 (493)
T COG4630 279 YRALAGRYPALGELWDRFGGEQVRNMGTLGGNIANGSP------IGDTPPALIALGATLTLRSGDGRRTLP--LEDYFIA 350 (493)
T ss_pred HHHHHhhCchHHHHHHHhcchhhhccccccccccCCCc------CCCCCchhhhcCcEEEEEecCCccccc--HHHHHHH
Confidence 9999875211110 01222 34456776655432 1222 224577888887766553 22 1377777
Q ss_pred hh
Q 009286 228 IR 229 (538)
Q Consensus 228 ~r 229 (538)
|+
T Consensus 351 Y~ 352 (493)
T COG4630 351 YG 352 (493)
T ss_pred hh
Confidence 75
No 49
>COG1319 CoxM Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion]
Probab=75.39 E-value=9.3 Score=38.42 Aligned_cols=76 Identities=25% Similarity=0.218 Sum_probs=53.5
Q ss_pred CcEEEecCCHHHHHHHHHHHHHCCCeEEEEeCCCCCCCC-ccccCCCeEEEEccCCc-ce-EEcCCCCeEEEcCCCCHHH
Q 009286 79 PQVIVTPFDVSQIQAVLKCAQKHDLLVKVRSGGHDHEGL-SYLSEVPFVMIDMINFS-QI-DVDAEAKSAWVGAGATLGE 155 (538)
Q Consensus 79 p~~vv~P~t~~dv~~~v~~a~~~~~~v~~~ggGh~~~g~-~~~~~~~givIdl~~~~-~i-~id~~~~~v~v~~G~~~~~ 155 (538)
+..+.+|.|.+|..++++ +.+ --.+.+|||+.... -........+||+.++. .. .+..+.+.+++|+-+++.+
T Consensus 3 ~f~y~rp~Sv~eA~~ll~---~~~-~a~~laGGt~L~~~~k~~~~~p~~lVdI~~l~~~~~~~~~~g~~l~IGA~vt~~e 78 (284)
T COG1319 3 NFEYYRPASVEEALNLLA---RAP-DAKYLAGGTDLLPLMKLGIERPDHLVDINGLDELLGIVTTEGGSLRIGALVTLTE 78 (284)
T ss_pred ceEEECCCCHHHHHHHHH---hCC-CcEEeeCcchHHHHhhcccCCcceEEEecCChhhhceEeecCCEEEEeecccHHH
Confidence 566789999998877776 444 57889999996631 11111236789998874 22 3334577899999999999
Q ss_pred HHH
Q 009286 156 LYY 158 (538)
Q Consensus 156 l~~ 158 (538)
+.+
T Consensus 79 i~~ 81 (284)
T COG1319 79 IAR 81 (284)
T ss_pred HHh
Confidence 863
No 50
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=74.13 E-value=5.6 Score=42.87 Aligned_cols=81 Identities=25% Similarity=0.375 Sum_probs=57.0
Q ss_pred chhHHhhhhcCCCCCCCcceEEcCCCcchHHHHhhcccccCCCCCCCCCCcEEEecCCHHHHHHHHHHHHHCC-CeEEE-
Q 009286 30 NEKFLQCLSVHSERTFISKVTYTQNNSSYISILNSLKQNLLYKPPEYGRPQVIVTPFDVSQIQAVLKCAQKHD-LLVKV- 107 (538)
Q Consensus 30 ~~~~~~c~~~~~~~~~~~~~~~~p~~~~y~~~~~~~~~n~r~~~~~~~~p~~vv~P~t~~dv~~~v~~a~~~~-~~v~~- 107 (538)
.+.+++-..+++.+ +.+.++.-+-++-+.+.. ++..+. ....|-.+++|.|.++|.++++.|+++- .||.+
T Consensus 110 ~krLv~kara~G~~--I~gvvIsAGIP~le~A~E-lI~~L~----~~G~~yv~fKPGtIeqI~svi~IAka~P~~pIilq 182 (717)
T COG4981 110 GKRLVQKARASGAP--IDGVVISAGIPSLEEAVE-LIEELG----DDGFPYVAFKPGTIEQIRSVIRIAKANPTFPIILQ 182 (717)
T ss_pred hHHHHHHHHhcCCC--cceEEEecCCCcHHHHHH-HHHHHh----hcCceeEEecCCcHHHHHHHHHHHhcCCCCceEEE
Confidence 34577777777655 478888888888877632 332221 2247889999999999999999999984 56665
Q ss_pred ----EeCCC-CCCCC
Q 009286 108 ----RSGGH-DHEGL 117 (538)
Q Consensus 108 ----~ggGh-~~~g~ 117 (538)
|+||| ||...
T Consensus 183 ~egGraGGHHSweDl 197 (717)
T COG4981 183 WEGGRAGGHHSWEDL 197 (717)
T ss_pred EecCccCCccchhhc
Confidence 34555 67654
No 51
>PF03614 Flag1_repress: Repressor of phase-1 flagellin; InterPro: IPR003223 Flagellin is the subunit which polymerises to form the filaments of bacterial flagella. The proteins in this family are transcriptional repressors of phase-1 flagellin genes.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent
Probab=57.36 E-value=38 Score=30.34 Aligned_cols=37 Identities=27% Similarity=0.191 Sum_probs=30.9
Q ss_pred EecCCHHHHHHHHHHHHHCCCeEEEEeC-CCCCCCCcc
Q 009286 83 VTPFDVSQIQAVLKCAQKHDLLVKVRSG-GHDHEGLSY 119 (538)
Q Consensus 83 v~P~t~~dv~~~v~~a~~~~~~v~~~gg-Gh~~~g~~~ 119 (538)
+.|++.+.+...+++++.+++||.+... |+++.+.-.
T Consensus 10 vwprdys~ler~l~f~r~~~~pVrvv~~ng~~f~myV~ 47 (165)
T PF03614_consen 10 VWPRDYSMLERRLQFWRFNDIPVRVVSENGQVFCMYVS 47 (165)
T ss_pred cCcchHHHHHHHHHHHHhcCCceEEEecCCcEEEEEEe
Confidence 5699999999999999999999999874 777655443
No 52
>TIGR00178 monomer_idh isocitrate dehydrogenase, NADP-dependent, monomeric type. The monomeric type of isocitrate dehydrogenase has been found so far in a small number of species, including Azotobacter vinelandii, Corynebacterium glutamicum, Rhodomicrobium vannielii, and Neisseria meningitidis. It is NADP-specific.
Probab=47.47 E-value=78 Score=34.93 Aligned_cols=131 Identities=14% Similarity=0.150 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHHCCCeEEEEeCCCCCCCCccccCCCeEEEEccC--C-c--ceEEcCCC---CeEEEcCCC----CHHH
Q 009286 88 VSQIQAVLKCAQKHDLLVKVRSGGHDHEGLSYLSEVPFVMIDMIN--F-S--QIDVDAEA---KSAWVGAGA----TLGE 155 (538)
Q Consensus 88 ~~dv~~~v~~a~~~~~~v~~~ggGh~~~g~~~~~~~~givIdl~~--~-~--~i~id~~~---~~v~v~~G~----~~~~ 155 (538)
.++|.+.++.+.+++-++....+-.+.+..-.+.+ |+||-|- | + +--.++++ .+.-|=|-- ...+
T Consensus 312 ~~eI~a~i~~~~~~~P~laMVnSdkGITNLHvPsD---VIIDASMPAmIR~~GkmW~~dG~~~Dt~avIPD~sYA~vYq~ 388 (741)
T TIGR00178 312 QEEIEADLQAVYAQRPELAMVNSDKGITNLHVPSD---VIVDASMPAMIRASGKMWGPDGKLKDTKAVIPDRCYAGVYQV 388 (741)
T ss_pred HHHHHHHHHHHHhhCCCEEEeccCCCccccCCCcC---eEEecCcHHHHhccCCccCCCCCcccceeecCCccchHHHHH
Confidence 57799999999999999999998887777777664 8898761 1 0 00122222 122232322 2456
Q ss_pred HHHHHHHhCCCceecCCCCCcccccccCcCCccCCCccccCchHHh--h---heeEEeecCceeee-ccCCCcchhHHhh
Q 009286 156 LYYKISEKSKNLAFPAGICPTVAVGGHLSGGGFGYIMRKYGLGADQ--V---IDAHLVDVNGRILD-RKSMGEDLFWAIR 229 (538)
Q Consensus 156 l~~~l~~~g~~l~~~~g~~~~vgvgG~~~gGg~g~~~~~~G~~~d~--v---~~~~vV~~~G~i~~-~~~~~~dlf~a~r 229 (538)
+++.|.++|.-=+..-|+.+.||+ ++- -+-.||..--. + =.++||+.+|+++- -+.+..|+|+++.
T Consensus 389 ~I~~ck~nGafDp~TmGsV~NVGL---MAq-----KAEEYGSHdkTFei~~~G~v~Vvd~~G~vl~eh~Ve~GDIwRmcq 460 (741)
T TIGR00178 389 VIEDCKQNGAFDPTTMGTVPNVGL---MAQ-----KAEEYGSHDKTFQIPADGVVRVVDSSGEVLLEQSVEAGDIWRMCQ 460 (741)
T ss_pred HHHHHHhcCCCCcccccCCcchhH---hHH-----HHHHhcCCCcceecCCCceEEEEeCCCCEEEEeeccCCcchhhhh
Confidence 778888888311112366666654 221 12234432100 1 12788999999985 3345679988775
No 53
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional
Probab=47.06 E-value=11 Score=39.14 Aligned_cols=22 Identities=18% Similarity=0.261 Sum_probs=18.4
Q ss_pred ccc-HHHHHHhhhccCCCCCccc
Q 009286 500 KNN-FYRLVDVKTKVDPGNFFRN 521 (538)
Q Consensus 500 g~n-~~RL~~IK~kyDP~nvF~~ 521 (538)
..+ .+-.++||++|||.++|+-
T Consensus 323 ~~~~~~l~~~lK~~fDP~~ilnp 345 (352)
T PRK11282 323 PAPLLRIHRRLKQAFDPAGIFNP 345 (352)
T ss_pred CHHHHHHHHHHHHhcCcccCCCC
Confidence 345 7888999999999999963
No 54
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=47.05 E-value=29 Score=35.44 Aligned_cols=57 Identities=19% Similarity=0.338 Sum_probs=40.0
Q ss_pred eEEcCCCcchHHHHhhcccccCCCCCCCCCCcEEEecCC------HHHHHHHHHHHHHCC------CeEEEEeCCC
Q 009286 49 VTYTQNNSSYISILNSLKQNLLYKPPEYGRPQVIVTPFD------VSQIQAVLKCAQKHD------LLVKVRSGGH 112 (538)
Q Consensus 49 ~~~~p~~~~y~~~~~~~~~n~r~~~~~~~~p~~vv~P~t------~~dv~~~v~~a~~~~------~~v~~~ggGh 112 (538)
.|..|+...|.+.+... +.||. ....+++|.. +++|.++++.+.+.+ +=|.+||||.
T Consensus 19 vITs~~gAa~~D~~~~~--~~r~~-----~~~~~~~p~~vQG~~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs 87 (319)
T PF02601_consen 19 VITSPTGAAIQDFLRTL--KRRNP-----IVEIILYPASVQGEGAAASIVSALRKANEMGQADDFDVIIIIRGGGS 87 (319)
T ss_pred EEeCCchHHHHHHHHHH--HHhCC-----CcEEEEEeccccccchHHHHHHHHHHHHhccccccccEEEEecCCCC
Confidence 44457777888886533 44775 4556666654 689999999998654 6677888876
No 55
>KOG4730 consensus D-arabinono-1, 4-lactone oxidase [Defense mechanisms]
Probab=45.26 E-value=11 Score=39.94 Aligned_cols=22 Identities=27% Similarity=0.680 Sum_probs=20.0
Q ss_pred ccHHHHHHhhhccCCCCCcccC
Q 009286 501 NNFYRLVDVKTKVDPGNFFRNE 522 (538)
Q Consensus 501 ~n~~RL~~IK~kyDP~nvF~~~ 522 (538)
.|+++..++|+++||.++|..+
T Consensus 485 ~n~~~flkvr~~lDP~~lFsse 506 (518)
T KOG4730|consen 485 KNLDKFLKVRKELDPKGLFSSE 506 (518)
T ss_pred cChHHHHHHHHhcCccchhhhh
Confidence 7999999999999999999543
No 56
>COG0351 ThiD Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [Coenzyme metabolism]
Probab=43.81 E-value=79 Score=31.43 Aligned_cols=91 Identities=15% Similarity=0.052 Sum_probs=58.3
Q ss_pred cceEEcCCCcchHHHHhhcccccCCCCCCCCCCcEEEecCCHHHHHHHHHHHHHCCCeEEEEeCCCCCCCCccccCCCeE
Q 009286 47 SKVTYTQNNSSYISILNSLKQNLLYKPPEYGRPQVIVTPFDVSQIQAVLKCAQKHDLLVKVRSGGHDHEGLSYLSEVPFV 126 (538)
Q Consensus 47 ~~~~~~p~~~~y~~~~~~~~~n~r~~~~~~~~p~~vv~P~t~~dv~~~v~~a~~~~~~v~~~ggGh~~~g~~~~~~~~gi 126 (538)
...+++|+-++.+.+.. . ...+|.+|++++-+...+.|.+-.+.=|||... ... -+
T Consensus 132 ~a~vvTPNl~EA~~L~g--------------~----~~i~~~~d~~~a~~~i~~~g~~~VliKGGH~~~---~~~---D~ 187 (263)
T COG0351 132 LATVVTPNLPEAEALSG--------------L----PKIKTEEDMKEAAKLLHELGAKAVLIKGGHLEG---EAV---DV 187 (263)
T ss_pred cCeEecCCHHHHHHHcC--------------C----CccCCHHHHHHHHHHHHHhCCCEEEEcCCCCCC---Cce---eE
Confidence 46799999988876532 1 267899999999999999999988888999754 111 23
Q ss_pred EEEccCCcce---EEcCCCCeEEEcCCCCHHHHHHHHHHhC
Q 009286 127 MIDMINFSQI---DVDAEAKSAWVGAGATLGELYYKISEKS 164 (538)
Q Consensus 127 vIdl~~~~~i---~id~~~~~v~v~~G~~~~~l~~~l~~~g 164 (538)
+.|-..+..+ .++.+ =+=|.|+++.-....-..+|
T Consensus 188 l~~~~~~~~f~~~ri~t~---~tHGTGCTlSaAIaa~LA~G 225 (263)
T COG0351 188 LYDGGSFYTFEAPRIPTK---NTHGTGCTLSAAIAANLAKG 225 (263)
T ss_pred EEcCCceEEEeccccCCC---CCCCccHHHHHHHHHHHHcC
Confidence 3333211111 22221 24588999886655444444
No 57
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=38.21 E-value=41 Score=36.13 Aligned_cols=57 Identities=26% Similarity=0.357 Sum_probs=40.4
Q ss_pred eEEcCCCcchHHHHhhcccccCCCCCCCCCCcEEEecCCH------HHHHHHHHHHHHC--CCeEEEEeCCC
Q 009286 49 VTYTQNNSSYISILNSLKQNLLYKPPEYGRPQVIVTPFDV------SQIQAVLKCAQKH--DLLVKVRSGGH 112 (538)
Q Consensus 49 ~~~~p~~~~y~~~~~~~~~n~r~~~~~~~~p~~vv~P~t~------~dv~~~v~~a~~~--~~~v~~~ggGh 112 (538)
.|..|+...+.+.++ .-+.||. .-...++|..+ .+|.++++.+.+. ++=|.+||||.
T Consensus 140 viTs~~gAa~~D~~~--~~~~r~p-----~~~~~~~~~~vQG~~A~~~i~~al~~~~~~~~Dviii~RGGGS 204 (438)
T PRK00286 140 VITSPTGAAIRDILT--VLRRRFP-----LVEVIIYPTLVQGEGAAASIVAAIERANARGEDVLIVARGGGS 204 (438)
T ss_pred EEeCCccHHHHHHHH--HHHhcCC-----CCeEEEecCcCcCccHHHHHHHHHHHhcCCCCCEEEEecCCCC
Confidence 444567778888865 3366775 34566666655 8999999998874 66788888884
No 58
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=35.43 E-value=40 Score=31.56 Aligned_cols=27 Identities=22% Similarity=0.251 Sum_probs=22.8
Q ss_pred HHHHHHHHHHCCCeEEEEeCCCCCCCC
Q 009286 91 IQAVLKCAQKHDLLVKVRSGGHDHEGL 117 (538)
Q Consensus 91 v~~~v~~a~~~~~~v~~~ggGh~~~g~ 117 (538)
..+.++|++++++|+.|.++|.++...
T Consensus 78 fKef~e~ike~di~fiVvSsGm~~fI~ 104 (220)
T COG4359 78 FKEFVEWIKEHDIPFIVVSSGMDPFIY 104 (220)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCchHHH
Confidence 456788999999999999999986533
No 59
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=34.85 E-value=2.3e+02 Score=30.18 Aligned_cols=34 Identities=26% Similarity=0.326 Sum_probs=32.2
Q ss_pred CCcEEEecCCHHHHHHHHHHHHHCCCeEEEEeCC
Q 009286 78 RPQVIVTPFDVSQIQAVLKCAQKHDLLVKVRSGG 111 (538)
Q Consensus 78 ~p~~vv~P~t~~dv~~~v~~a~~~~~~v~~~ggG 111 (538)
....|+.|+-.|-..++.+.|+++|+++.-||.|
T Consensus 260 ~~llIlVPRHpERf~~v~~l~~~~gl~~~~rS~~ 293 (419)
T COG1519 260 NLLLILVPRHPERFKAVENLLKRKGLSVTRRSQG 293 (419)
T ss_pred CceEEEecCChhhHHHHHHHHHHcCCeEEeecCC
Confidence 5678999999999999999999999999999988
No 60
>KOG3282 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.26 E-value=45 Score=31.02 Aligned_cols=36 Identities=17% Similarity=0.297 Sum_probs=30.5
Q ss_pred CCCCCCCCCCcEEEecCCHHHHHHHHHHHHHCCCeEEE
Q 009286 70 LYKPPEYGRPQVIVTPFDVSQIQAVLKCAQKHDLLVKV 107 (538)
Q Consensus 70 r~~~~~~~~p~~vv~P~t~~dv~~~v~~a~~~~~~v~~ 107 (538)
||.. -..|..||+.++++++.++.+.|++.+++..+
T Consensus 118 ~We~--~GQ~KIvvk~~~e~~l~~l~~~A~~~gl~t~~ 153 (190)
T KOG3282|consen 118 RWEN--CGQAKIVVKAESEEELMELQKDAKKLGLYTHL 153 (190)
T ss_pred HHHH--cCCceEEEEcCCHHHHHHHHHHHHHcCCcEEE
Confidence 5765 34899999999999999999999999876543
No 61
>PF04472 DUF552: Protein of unknown function (DUF552); InterPro: IPR007561 This entry represents a cell division protein, designated SepF, which is conserved in Gram-positive bacteria. SepF accumulates at the cell division site in an FtsZ-dependent manner and is required for proper septum formation []. Mutants are viable but the formation of the septum is much slower and occurs with a very abnormal morphology. This entry also includes archaeal related proteins of unknown function.; GO: 0000917 barrier septum formation; PDB: 3P04_A.
Probab=31.58 E-value=72 Score=24.83 Aligned_cols=33 Identities=12% Similarity=0.397 Sum_probs=23.8
Q ss_pred EEEecCCHHHHHHHHHHHHHCCCeEEEEeCCCCCCCCccccCCCeEEEEccCCcc
Q 009286 81 VIVTPFDVSQIQAVLKCAQKHDLLVKVRSGGHDHEGLSYLSEVPFVMIDMINFSQ 135 (538)
Q Consensus 81 ~vv~P~t~~dv~~~v~~a~~~~~~v~~~ggGh~~~g~~~~~~~~givIdl~~~~~ 135 (538)
.++.|++.+|+++++...++.+ .+++|++.|+.
T Consensus 2 ~v~~p~~~~D~~~i~~~l~~g~----------------------~Vivnl~~l~~ 34 (73)
T PF04472_consen 2 VVFEPKSFEDAREIVDALREGK----------------------IVIVNLENLDD 34 (73)
T ss_dssp EEEE-SSGGGHHHHHHHHHTT------------------------EEEE-TTS-H
T ss_pred EEEeeCCHHHHHHHHHHHHcCC----------------------EEEEECCCCCH
Confidence 5789999999999998887642 68899988764
No 62
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included
Probab=28.02 E-value=84 Score=28.36 Aligned_cols=30 Identities=27% Similarity=0.319 Sum_probs=26.1
Q ss_pred cEEEecCCHHHHHHHHHHHHHCCCeEEEEe
Q 009286 80 QVIVTPFDVSQIQAVLKCAQKHDLLVKVRS 109 (538)
Q Consensus 80 ~~vv~P~t~~dv~~~v~~a~~~~~~v~~~g 109 (538)
..|+.|.+.+|+..++++|-+..-|+.+|=
T Consensus 125 ~~v~~Ps~~~~~~~ll~~a~~~~~P~~irl 154 (156)
T cd07033 125 MTVLRPADANETAAALEAALEYDGPVYIRL 154 (156)
T ss_pred CEEEecCCHHHHHHHHHHHHhCCCCEEEEe
Confidence 358999999999999999998877888773
No 63
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=26.92 E-value=3.9e+02 Score=29.84 Aligned_cols=83 Identities=19% Similarity=0.186 Sum_probs=50.2
Q ss_pred CCCcE-EEecCCHHHHHHHHHHHHHCC-CeEEEEeC-CCCCCCCccccCCCeEEEEccCCcceEEcCCCCeEEEcCCCCH
Q 009286 77 GRPQV-IVTPFDVSQIQAVLKCAQKHD-LLVKVRSG-GHDHEGLSYLSEVPFVMIDMINFSQIDVDAEAKSAWVGAGATL 153 (538)
Q Consensus 77 ~~p~~-vv~P~t~~dv~~~v~~a~~~~-~~v~~~gg-Gh~~~g~~~~~~~~givIdl~~~~~i~id~~~~~v~v~~G~~~ 153 (538)
+.|-. |..|++++|+++++.+|..++ -|+.+|== |+......... .-.++..+ ...+-.....+.+.-|..+
T Consensus 439 ~iPnmvi~aP~de~el~~ml~ta~~~~~gP~AiRyPrg~~~~~~~~~~---~~~~~~Gk--~~i~~~G~~vail~~G~~~ 513 (627)
T COG1154 439 CIPNMVIMAPRDEEELRQMLYTALAQDDGPVAIRYPRGNGVGVILTPE---LEPLEIGK--GELLKEGEKVAILAFGTML 513 (627)
T ss_pred cCCCcEEecCCCHHHHHHHHHHHHhcCCCCeEEEecCCCCCCCCcccc---cccccccc--eEEEecCCcEEEEecchhh
Confidence 35544 668999999999999999998 69998853 33322111100 11233332 1122345678888888888
Q ss_pred HHHH---HHHHHhC
Q 009286 154 GELY---YKISEKS 164 (538)
Q Consensus 154 ~~l~---~~l~~~g 164 (538)
..-. +.|.++|
T Consensus 514 ~~al~vae~L~~~G 527 (627)
T COG1154 514 PEALKVAEKLNAYG 527 (627)
T ss_pred HHHHHHHHHHHhcC
Confidence 7544 4444444
No 64
>PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 2BFF_B 2BEV_B 1OLS_B 1V16_B 2BFD_B 1V1M_B 2BFC_B 1X80_B 1X7W_B 1OLX_B ....
Probab=24.96 E-value=1.1e+02 Score=28.31 Aligned_cols=32 Identities=25% Similarity=0.337 Sum_probs=26.8
Q ss_pred cEEEecCCHHHHHHHHHHHHH--CCCeEEEEeCC
Q 009286 80 QVIVTPFDVSQIQAVLKCAQK--HDLLVKVRSGG 111 (538)
Q Consensus 80 ~~vv~P~t~~dv~~~v~~a~~--~~~~v~~~ggG 111 (538)
..|+.|.+.+|+..++++|-+ .+-|+.+|-..
T Consensus 139 ~~v~~Psd~~e~~~~l~~a~~~~~~~P~~ir~~r 172 (178)
T PF02779_consen 139 MKVVVPSDPAEAKGLLRAAIRRESDGPVYIREPR 172 (178)
T ss_dssp EEEEE-SSHHHHHHHHHHHHHSSSSSEEEEEEES
T ss_pred cccccCCCHHHHHHHHHHHHHhCCCCeEEEEeeH
Confidence 568999999999999999999 66888888654
No 65
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=24.88 E-value=55 Score=35.14 Aligned_cols=62 Identities=21% Similarity=0.212 Sum_probs=38.6
Q ss_pred eEEcCCCcchHHHHhhcccccCCCC-CCCCCCcEEEecCCHHHHHHHHHHHHHC---CCeEEEEeCCC
Q 009286 49 VTYTQNNSSYISILNSLKQNLLYKP-PEYGRPQVIVTPFDVSQIQAVLKCAQKH---DLLVKVRSGGH 112 (538)
Q Consensus 49 ~~~~p~~~~y~~~~~~~~~n~r~~~-~~~~~p~~vv~P~t~~dv~~~v~~a~~~---~~~v~~~ggGh 112 (538)
.|-.|+...+.+.+. .-+.||.. .....|..|==...+.+|.++++.+.+. ++=|.+||||+
T Consensus 134 vits~~~aa~~D~~~--~~~~r~p~~~~~~~~~~vQG~~a~~~i~~al~~~~~~~~~dviii~RGGGs 199 (432)
T TIGR00237 134 VITSQTGAALADILH--ILKRRDPSLKVVIYPTLVQGEGAVQSIVESIELANTKNECDVLIVGRGGGS 199 (432)
T ss_pred EEeCCccHHHHHHHH--HHHhhCCCceEEEecccccCccHHHHHHHHHHHhhcCCCCCEEEEecCCCC
Confidence 444577778888865 33567753 2222333333334558899999988863 45677777775
No 66
>PF13986 DUF4224: Domain of unknown function (DUF4224)
Probab=24.84 E-value=1.1e+02 Score=21.77 Aligned_cols=21 Identities=14% Similarity=0.344 Sum_probs=17.3
Q ss_pred HHHHHHHHCCCeEEEEeCCCC
Q 009286 93 AVLKCAQKHDLLVKVRSGGHD 113 (538)
Q Consensus 93 ~~v~~a~~~~~~v~~~ggGh~ 113 (538)
..+++.+++|+++.++-.|+-
T Consensus 19 ~Q~~~L~~~Gi~~~~~~~G~p 39 (47)
T PF13986_consen 19 KQIRWLRRNGIPFVVRADGRP 39 (47)
T ss_pred HHHHHHHHCCCeeEECCCCCE
Confidence 457889999999999887763
No 67
>KOG0523 consensus Transketolase [Carbohydrate transport and metabolism]
Probab=24.56 E-value=3.3e+02 Score=30.35 Aligned_cols=83 Identities=12% Similarity=0.103 Sum_probs=51.5
Q ss_pred CCc-EEEecCCHHHHHHHHHHHHH-CCCeEEEEeCCCCCCCCccccCCCeEEEEccCCcceEEcCCCCeEEEcCCCCHHH
Q 009286 78 RPQ-VIVTPFDVSQIQAVLKCAQK-HDLLVKVRSGGHDHEGLSYLSEVPFVMIDMINFSQIDVDAEAKSAWVGAGATLGE 155 (538)
Q Consensus 78 ~p~-~vv~P~t~~dv~~~v~~a~~-~~~~v~~~ggGh~~~g~~~~~~~~givIdl~~~~~i~id~~~~~v~v~~G~~~~~ 155 (538)
.|. .|.+|.+..|+.+++..|.. .+.|...+...-|......... +...+=+-|-.+.+..++.+|.|+++.+
T Consensus 445 iPn~~v~~PaD~~et~~av~~Aa~~~~~p~i~~~~r~~~~~~~~~~~-----~~igkg~~vl~~~~~dV~LiG~Gs~v~~ 519 (632)
T KOG0523|consen 445 IPNMIVFRPADGNETENAVATAANTKGTPSIRTLSRQNLPIYNNTEI-----EEIGKGKYVLQEVEPDVILIGTGSEVQE 519 (632)
T ss_pred CCCceEEecCchHHHHHHHHHHHhcCCCeeEEEecCccccccCCCch-----hhhccccEEEecCCCCEEEEeccHHHHH
Confidence 554 47799999999999999855 5677777776555443322211 1111111123344467999999999986
Q ss_pred HH---HHHHHhCC
Q 009286 156 LY---YKISEKSK 165 (538)
Q Consensus 156 l~---~~l~~~g~ 165 (538)
-+ +.|.+.|+
T Consensus 520 cl~AA~~L~~~gi 532 (632)
T KOG0523|consen 520 CLEAAELLSEDGI 532 (632)
T ss_pred HHHHHHHHHhcCc
Confidence 54 44555554
No 68
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=23.70 E-value=54 Score=34.99 Aligned_cols=57 Identities=21% Similarity=0.323 Sum_probs=35.7
Q ss_pred eEEcCCCcchHHHHhhcccccCCCCCCCCCCcEEEecC------CHHHHHHHHHHHHHCC-Ce--EEEEeCCC
Q 009286 49 VTYTQNNSSYISILNSLKQNLLYKPPEYGRPQVIVTPF------DVSQIQAVLKCAQKHD-LL--VKVRSGGH 112 (538)
Q Consensus 49 ~~~~p~~~~y~~~~~~~~~n~r~~~~~~~~p~~vv~P~------t~~dv~~~v~~a~~~~-~~--v~~~ggGh 112 (538)
.|-.|......+.+. .-..||+ .-..+++|. ..++|.++|+.|++.+ +- |..||||+
T Consensus 140 VITS~tgAairDIl~--~~~rR~P-----~~~viv~pt~VQG~~A~~eIv~aI~~an~~~~~DvlIVaRGGGS 205 (440)
T COG1570 140 VITSPTGAALRDILH--TLSRRFP-----SVEVIVYPTLVQGEGAAEEIVEAIERANQRGDVDVLIVARGGGS 205 (440)
T ss_pred EEcCCchHHHHHHHH--HHHhhCC-----CCeEEEEeccccCCCcHHHHHHHHHHhhccCCCCEEEEecCcch
Confidence 344466666777654 2356775 244555555 4589999999999876 44 44555554
No 69
>cd02429 PTH2_like Peptidyl-tRNA hydrolase, type 2 (PTH2)_like . Peptidyl-tRNA hydrolase activity releases tRNA from the premature translation termination product peptidyl-tRNA. Two structurally different enzymes have been reported to encode such activity, Pth present in bacteria and eukaryotes and Pth2 present in archaea and eukaryotes. There is no functional information for this eukaryote-specific subgroup.
Probab=23.46 E-value=1.5e+02 Score=25.55 Aligned_cols=34 Identities=9% Similarity=0.094 Sum_probs=30.3
Q ss_pred CCCCCCCCCcEEEecCCHHHHHHHHHHHHHCCCeEEEE
Q 009286 71 YKPPEYGRPQVIVTPFDVSQIQAVLKCAQKHDLLVKVR 108 (538)
Q Consensus 71 ~~~~~~~~p~~vv~P~t~~dv~~~v~~a~~~~~~v~~~ 108 (538)
|+. ....|++..+++|+.++-+.|++.|++..++
T Consensus 52 ~~g----~~KVVLkv~~e~eL~~L~~~a~~~gi~~~l~ 85 (116)
T cd02429 52 LDN----MHKVVLEVPDEAALKNLSSKLTENSIKHKLW 85 (116)
T ss_pred hCC----CceEEEEeCCHHHHHHHHHHHHHcCCCeEEE
Confidence 755 8999999999999999999999999886663
No 70
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=22.97 E-value=79 Score=32.58 Aligned_cols=23 Identities=9% Similarity=0.225 Sum_probs=20.6
Q ss_pred CCHHHHHHHHHHHHHCCCeEEEE
Q 009286 86 FDVSQIQAVLKCAQKHDLLVKVR 108 (538)
Q Consensus 86 ~t~~dv~~~v~~a~~~~~~v~~~ 108 (538)
=|.+|++++|++|+++|+.|.+-
T Consensus 72 YT~~di~elv~yA~~rgI~vIPE 94 (329)
T cd06568 72 YTQEDYKDIVAYAAERHITVVPE 94 (329)
T ss_pred CCHHHHHHHHHHHHHcCCEEEEe
Confidence 38999999999999999988774
No 71
>TIGR01676 GLDHase galactonolactone dehydrogenase. This model represents L-Galactono-gamma-lactone dehydrogenase (EC 1.3.2.3). This enzyme catalyzes the final step in ascorbic acid biosynthesis in higher plants. This protein is homologous to ascorbic acid biosynthesis enzymes of other species: L-gulono-gamma-lactone oxidase in rat and L-galactono-gamma-lactone oxidase in yeast. All three covalently bind the cofactor FAD.
Probab=22.93 E-value=53 Score=36.28 Aligned_cols=26 Identities=19% Similarity=0.351 Sum_probs=21.3
Q ss_pred hHHhhhcccHHHHHHhhhccCCCCCcccC
Q 009286 494 WGKKYFKNNFYRLVDVKTKVDPGNFFRNE 522 (538)
Q Consensus 494 ~~~~Yyg~n~~RL~~IK~kyDP~nvF~~~ 522 (538)
+.+.| . +.+-+++.+++||+++|.|+
T Consensus 509 l~~~Y-P--~d~F~~~R~~lDP~g~F~N~ 534 (541)
T TIGR01676 509 LKKKF-P--VDASNKARKALDPNKILSNN 534 (541)
T ss_pred HHhhC-C--HHHHHHHHHHhCCCCccccH
Confidence 44445 3 78899999999999999875
No 72
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=22.13 E-value=85 Score=31.86 Aligned_cols=24 Identities=13% Similarity=0.238 Sum_probs=20.9
Q ss_pred cCCHHHHHHHHHHHHHCCCeEEEE
Q 009286 85 PFDVSQIQAVLKCAQKHDLLVKVR 108 (538)
Q Consensus 85 P~t~~dv~~~v~~a~~~~~~v~~~ 108 (538)
.-|.+|++++|++|+++|+.|.+-
T Consensus 68 ~yT~~di~elv~yA~~rgI~viPE 91 (303)
T cd02742 68 FYTYAQLKDIIEYAAARGIEVIPE 91 (303)
T ss_pred eECHHHHHHHHHHHHHcCCEEEEe
Confidence 348899999999999999988764
No 73
>PLN02465 L-galactono-1,4-lactone dehydrogenase
Probab=20.43 E-value=59 Score=36.21 Aligned_cols=28 Identities=14% Similarity=0.341 Sum_probs=23.0
Q ss_pred hhhHHhhhcccHHHHHHhhhccCCCCCcccC
Q 009286 492 SIWGKKYFKNNFYRLVDVKTKVDPGNFFRNE 522 (538)
Q Consensus 492 ~~~~~~Yyg~n~~RL~~IK~kyDP~nvF~~~ 522 (538)
+.+.+.| . +.+.+++.+++||+++|.|+
T Consensus 537 ~~L~~~Y-P--~d~F~~~R~~lDP~g~f~N~ 564 (573)
T PLN02465 537 ERLRKRF-P--VDAFNKARKELDPKGILSNN 564 (573)
T ss_pred HHHHhhC-C--HHHHHHHHHHhCCCCccCCH
Confidence 3455555 4 99999999999999999875
Done!