Query 009287
Match_columns 538
No_of_seqs 275 out of 764
Neff 4.3
Searched_HMMs 46136
Date Thu Mar 28 22:43:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009287.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009287hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0675 Calnexin [Posttranslat 100.0 6E-149 1E-153 1170.4 35.2 480 8-491 5-518 (558)
2 PF00262 Calreticulin: Calreti 100.0 2E-141 5E-146 1095.3 14.6 352 32-389 1-367 (367)
3 KOG0674 Calreticulin [Posttran 100.0 1E-109 3E-114 834.8 26.4 345 11-414 5-358 (406)
4 KOG0675 Calnexin [Posttranslat 100.0 8.2E-35 1.8E-39 308.0 12.0 217 241-492 248-479 (558)
5 PF00262 Calreticulin: Calreti 100.0 9.8E-34 2.1E-38 294.3 2.0 123 222-350 217-341 (367)
6 KOG0674 Calreticulin [Posttran 99.9 2.5E-22 5.4E-27 204.2 16.0 249 84-371 21-306 (406)
7 PF07423 DUF1510: Protein of u 87.9 0.5 1.1E-05 47.6 3.5 23 466-488 13-35 (217)
8 PF14851 FAM176: FAM176 family 71.7 11 0.00024 36.3 6.3 15 446-461 8-22 (153)
9 PF06439 DUF1080: Domain of Un 66.3 1.1E+02 0.0024 28.2 11.9 142 37-208 5-153 (185)
10 PF01102 Glycophorin_A: Glycop 65.3 4.5 9.8E-05 37.5 2.2 8 483-490 83-90 (122)
11 KOG3054 Uncharacterized conser 63.8 9.3 0.0002 39.6 4.3 13 525-537 55-67 (299)
12 PRK10404 hypothetical protein; 41.5 46 0.00099 29.9 4.5 28 451-478 66-93 (101)
13 PF07423 DUF1510: Protein of u 40.9 24 0.00051 35.8 2.9 25 466-491 17-41 (217)
14 PF07210 DUF1416: Protein of u 40.0 42 0.00091 29.6 3.9 27 94-121 5-31 (85)
15 PF02439 Adeno_E3_CR2: Adenovi 37.9 42 0.0009 25.6 3.1 23 469-491 10-32 (38)
16 PRK10132 hypothetical protein; 37.8 34 0.00073 31.1 3.1 23 456-478 77-99 (108)
17 PF14575 EphA2_TM: Ephrin type 36.5 42 0.00091 28.4 3.3 21 469-489 4-24 (75)
18 COG4575 ElaB Uncharacterized c 36.2 37 0.00079 31.0 3.1 21 459-479 77-97 (104)
19 PF05957 DUF883: Bacterial pro 35.7 56 0.0012 28.1 4.1 24 455-478 63-86 (94)
20 PF13908 Shisa: Wnt and FGF in 32.3 32 0.0007 32.9 2.3 11 468-478 81-91 (179)
21 PF04478 Mid2: Mid2 like cell 32.3 11 0.00024 36.4 -0.9 26 466-491 53-78 (154)
22 PHA02513 V1 structural protein 31.1 1.1E+02 0.0024 28.5 5.3 31 434-468 30-60 (135)
23 PF12273 RCR: Chitin synthesis 30.7 25 0.00055 32.1 1.2 7 5-11 1-7 (130)
24 PF02439 Adeno_E3_CR2: Adenovi 30.6 78 0.0017 24.2 3.5 24 465-488 2-25 (38)
25 PF05568 ASFV_J13L: African sw 27.2 43 0.00094 32.5 2.1 11 482-492 47-57 (189)
26 PRK00523 hypothetical protein; 26.9 52 0.0011 28.2 2.3 26 466-491 3-28 (72)
27 PF07010 Endomucin: Endomucin; 25.7 1.2E+02 0.0026 31.5 5.0 26 467-492 194-219 (259)
28 PF01299 Lamp: Lysosome-associ 25.0 60 0.0013 33.8 2.9 17 94-111 104-120 (306)
29 PF12911 OppC_N: N-terminal TM 24.2 1.4E+02 0.003 23.0 4.1 32 456-487 7-38 (56)
30 PF15069 FAM163: FAM163 family 23.9 57 0.0012 31.3 2.2 16 468-483 9-24 (143)
31 PF14851 FAM176: FAM176 family 23.3 2.6E+02 0.0056 27.1 6.6 13 457-469 11-23 (153)
32 PF11025 GP40: Glycoprotein GP 22.6 1.7E+02 0.0038 28.2 5.1 73 108-209 5-77 (165)
33 PF14083 PGDYG: PGDYG protein 22.6 77 0.0017 28.7 2.6 58 42-102 16-85 (102)
34 PRK01844 hypothetical protein; 22.2 72 0.0016 27.4 2.3 25 467-491 3-27 (72)
35 PF15048 OSTbeta: Organic solu 21.6 1.1E+02 0.0023 28.9 3.5 19 464-482 33-51 (125)
36 PF07204 Orthoreo_P10: Orthore 21.5 57 0.0012 29.4 1.6 19 473-491 49-67 (98)
37 PF04995 CcmD: Heme exporter p 20.8 1.2E+02 0.0026 23.2 3.1 17 466-482 6-22 (46)
No 1
>KOG0675 consensus Calnexin [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.2e-149 Score=1170.38 Aligned_cols=480 Identities=55% Similarity=0.955 Sum_probs=426.9
Q ss_pred HHHHHHHHHHHhhhcccccC------------CCcccceecccCcc--cCCCceeccCC---------CccceEEEeCCC
Q 009287 8 SLRFALLLFAAFVSFQLISA------------SDDATILYESFDES--FEGRWIVSQKD---------EYKGVWKHSKSE 64 (538)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~------------~~~~~~F~E~Fd~~--~~~rWv~S~~~---------~y~G~W~~~~~~ 64 (538)
.++++++||++++.+..... .+-+..|.++||.+ |. |||.|.++ +|.|+|.++++.
T Consensus 5 ~~~~~~lLli~~v~~~~~~~~~~~~e~~~~~~~~ykspf~d~Fd~~~~~~-rWi~S~akk~d~~~ei~kY~G~W~~ee~~ 83 (558)
T KOG0675|consen 5 MLLFLFLLLIAAVDGNDDDYEDTCTEPSVFSKESYKSPFADHFDGGTAST-RWILSWAKKDDIDDEIAKYDGVWDLEEPP 83 (558)
T ss_pred HHHHHHHHHHHHhhccccccccccccccccccccccCcchhcccccccce-eeeeeecccccccchhhhccceeeeccCc
Confidence 34445666666666443211 11233478888863 44 89999874 899999999765
Q ss_pred C---CCCceeeeCCCcchhhhhcccCCCccCCCCcEEEEEEEEecCCcccCCceeEecCCCCCCCCccccCCCCCeEEEE
Q 009287 65 G---HEDYGLLVGEPAKKYAIVKELDEPLSLKDGTVVLQYEVRLQNGLECGGAYLKYLRPQEAGWVSKEFDNESPYMIMF 141 (538)
Q Consensus 65 ~---~~D~GL~~~~~ak~yaIs~~l~kp~~~~~k~LVvQYeVk~q~~l~CGGaYiKLl~~~~~~~~~~~f~~~TpY~IMF 141 (538)
. ++|+|||++++|||||||+.|++||+++.++||||||||+|+|++|||||||||+.+..+..+++|+++|||+|||
T Consensus 84 ~~~~~~D~GLvvkskakhhaI~a~L~~P~~~~~~plVVQYEvk~qeg~eCGGAYlKLLs~~~~~~~l~~f~dktpy~ImF 163 (558)
T KOG0675|consen 84 KSHLAGDYGLVVKSKAKHHAISAELEEPFNFKEKPLVVQYEVKFQEGLECGGAYLKLLSQGTAGENLKNFDDKTPYTIMF 163 (558)
T ss_pred cccCCcccceEeeccchhhHHHhhhcCCcccCCCCeEEEEEEecCCCcccchhHHHhhcccccccchhccCCCCCeEEEe
Confidence 3 8999999999999999999999999999999999999999999999999999999878889999999999999999
Q ss_pred cCCCCCCCCeEEEEEecCCCCCccccccccCCCCC----CCCCCCCceEEEEEcCCCceEEeecceeeccccccccCCCC
Q 009287 142 GPDKCGATNKVHFILKHKNPKSGEYIEHHLKNPPS----VPSDKLTHVYTAILKPDNELRILIDGEEKQKANFLAADDFQ 217 (538)
Q Consensus 142 GPDkCG~~~kvHfI~~~knp~tg~~ee~~lk~p~~----~~~D~~tHLYTLIl~pdntfeI~IDg~~~~~GsL~~~~df~ 217 (538)
||||||.+++|||||||+||+||+|+|||++.|+. ..+|++||||||||+|||||+|||||++|+.|||+ +||.
T Consensus 164 GPDKCG~~~kvhFIf~hknp~tG~~~ekh~~~pp~~l~~~~~d~~tHLYTLvl~pd~sfeI~vDg~vv~~G~ll--~Df~ 241 (558)
T KOG0675|consen 164 GPDKCGETNKVHFIFRHKNPITGEISEKHLKAPPSSLKKPFDDKLTHLYTLVLKPDNTFEIRVDGKVVYKGSLL--TDFE 241 (558)
T ss_pred CccccCCcccEEEEEeeccCCCCeeehhhccCCCcccccccccCCceeEEEEecCCCeEEEEecCcEEEecccc--cccC
Confidence 99999999999999999999999999999999998 56799999999999999999999999999999999 8999
Q ss_pred CCCCCCCCCCCCCCCCCCCccccCccCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCC
Q 009287 218 PPLIPEKTIPDPDDKKPEDWDERAKIPDPDAVKPEDWDEDAPMEIEDEDAVKPEGWLDDDPEEIDDPEATKPEDWDDEED 297 (538)
Q Consensus 218 P~~~ppk~I~DP~d~KPeDWdd~~~I~DP~a~KPeDWde~~p~~I~Dp~a~KP~dW~ddep~~I~DP~a~KPedWdd~~d 297 (538)
||++||++|+||+|.||+|||+|++||||+|+||+||||++|++|+|++|+||++|+++||++|+||+|+||+|||+++|
T Consensus 242 Ppv~Pp~eI~Dp~d~KP~dWDer~kIpDpnAvKPdDWDE~~P~~Ipd~davkP~~Wledep~~I~DP~A~KPedWdee~d 321 (558)
T KOG0675|consen 242 PPVTPPKEIPDPSDKKPEDWDERAKIPDPNAVKPDDWDEDAPLSIPDEDAVKPEGWLEDEPEYIPDPEAQKPEDWDEEED 321 (558)
T ss_pred CCCCCccccCCcccCCccchhhhhcCCCcccCCccccCcCCCccCCCccccCCccccccCCcccCCcccCCCCCCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCccccCCCCCccCCCCCCCCCCCCcccCCccCCCCCCCCCCCCCCCCCCCCCCCCC-CCcccceeeEeEe
Q 009287 298 GEWEAPKIDNPKCEAAPGCGEWKRPMKRNPAYKGKWHAPHIDNPNYKGIWKPQQIPNPNYFELDKP-DFEPIAAVGIEIW 376 (538)
Q Consensus 298 G~W~~p~i~NP~c~~~~gcG~W~~P~I~NP~ykG~W~pp~I~NP~YkG~W~P~~I~NP~y~~d~~p-~~~~i~~iG~ElW 376 (538)
|+|++|+|.||+|..++|||+|++|||+||+|||+|.+|||+||+|+|+|+||+|+||+||++.+| .+++|.+||+|+|
T Consensus 322 GeWeap~I~NP~C~~~~GCG~wk~p~I~NP~YKGkw~~pmI~NP~y~G~W~PRkI~NPdyfEd~~p~~~~pIsavglElW 401 (558)
T KOG0675|consen 322 GEWEAPMIINPKCKEASGCGEWKPPMINNPNYKGKWILPMIDNPNYQGIWKPRKIPNPDYFEDDKPFTLTPISAVGLELW 401 (558)
T ss_pred CccccccccCchhhcCCCCCcccCcccCCCccCCCCccccccCccccCccccccCCCcccccccCcccccchhhhhhhhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999 8999999999999
Q ss_pred eeccCceeeeeeecCCHHHHHHHHHhhcCCCchhHHHHHHHHHhhcCCC-CccchhHHHHHHHhhhhcchhhhHH-hhhh
Q 009287 377 TMQDGILFDNILISKDEKVAESYRASAWKPKFDVEKEKLKAEEAAAGSD-GLAGFQKTVFDLLYKVADIPFLDAY-KLKI 454 (538)
Q Consensus 377 ~~~~~~~FDNili~~d~~~a~~~~~~t~~~k~~~e~~~~~~e~~~~~~~-~~~~~~~~~~~~~~~~~~~~fl~~~-~~~~ 454 (538)
+|+++|+|||||||+++++|+.+++.||..|..+++++.-..+...... -...++..++.++..++++.++..+ +.++
T Consensus 402 sMs~~IlfdNi~i~~~~e~a~~~~~~tw~~K~~~~~e~~~~~~~~~~~~~~~~~w~~~i~~~~~~v~~i~~~c~~~k~k~ 481 (558)
T KOG0675|consen 402 SMSSNILFDNIIITKDIEVAEDIANFTWLLKAAAEREKPFVQQVMEAAEGHPWLWAIYILTLLLPVADITKFCAPVKSKI 481 (558)
T ss_pred hcCCCceeceeEEeccHHHHHHhhhhceeeehhhcccchHHHHHHhhccccchHHHHHHHHhhhhHhhhhhcccccccch
Confidence 9999999999999999999999999999999888877652222222222 3345788899999999998887777 7767
Q ss_pred hhhhhhhc-cCchhHHHHHHHHHHHHHHHHHHHhhCCC
Q 009287 455 IDVIEKGE-KQPNLTIGILVSVVAVIITVLFKIIFGGK 491 (538)
Q Consensus 455 ~~~~e~~~-~~p~~~~~~~~~v~~~~~~~~~~~~~~~~ 491 (538)
...++++. .||.+.+++.+.++.. ...++.+.++|+
T Consensus 482 ~~~~~ktd~~qP~~~~~~~~~~~~~-~~~~~~~~~~~~ 518 (558)
T KOG0675|consen 482 SDAIEKTDDEQPNLKIGLEAEIKED-ESDMFKLEFSGS 518 (558)
T ss_pred hhHHhhccccCCCcccchhhhhhhh-hhhhhccccCCc
Confidence 77777555 8999998777766543 444444444443
No 2
>PF00262 Calreticulin: Calreticulin family; InterPro: IPR001580 Synonym(s): Calregulin, CRP55, HACBP Calreticulin [] is a high-capacity calcium-binding protein which is present in most tissues and located at the periphery of the endoplasmic (ER) and the sarcoplamic reticulum (SR) membranes. It probably plays a role in the storage of calcium in the lumen of the ER and SR and it may well have other important functions. Structurally, calreticulin is a protein of about 400 amino acid residues consisting of three domains: An N-terminal, probably globular, domain of about 180 amino acid residues (N-domain). A central domain of about 70 residues (P-domain) which contains three repeats of an acidic 17 amino acid motif. This region binds calcium with a low-capacity, but a high-affinity. A C-terminal domain rich in acidic residues and in lysine (C-domain). This region binds calcium with a high-capacity but a low-affinity. Calreticulin is evolutionarily related to several other calcium-binding proteins, including Onchocerca volvulus antigen RAL-1, calnexin [] and calmegin [].; GO: 0005509 calcium ion binding; PDB: 3POS_C 3DOW_B 3POW_A 1HHN_A 1K9C_A 1K91_A 3O0X_B 3O0W_A 3RG0_A 3O0V_A ....
Probab=100.00 E-value=2.3e-141 Score=1095.32 Aligned_cols=352 Identities=59% Similarity=1.160 Sum_probs=264.5
Q ss_pred cceecccCcc--cCCCceeccCC------CccceEEEeCCC----CCCCceeeeCCCcchhhhhcccCCCccCCCCcEEE
Q 009287 32 TILYESFDES--FEGRWIVSQKD------EYKGVWKHSKSE----GHEDYGLLVGEPAKKYAIVKELDEPLSLKDGTVVL 99 (538)
Q Consensus 32 ~~F~E~Fd~~--~~~rWv~S~~~------~y~G~W~~~~~~----~~~D~GL~~~~~ak~yaIs~~l~kp~~~~~k~LVv 99 (538)
+||+|+|+++ |.+|||+|+++ +|.|+|+++++. ..+|+||||+++|||||||++|++||++++|+|||
T Consensus 1 v~F~E~F~~~~~~~~rWv~S~~~k~~~~~~y~G~W~~~~~~~~~~~~~DkGLv~~~~ak~yaIS~kl~kPf~~~~k~LVv 80 (367)
T PF00262_consen 1 VYFFETFDDGDDWKSRWVQSEAKKDDEIAKYDGKWELEAGKWYPGFEGDKGLVTKSDAKHYAISAKLDKPFSNKDKDLVV 80 (367)
T ss_dssp EEEEE---SGGGGGGTEEE--SSST--------EEEEEB-SSTSSTTTTBEEEEESSSEEEEEEEEEEEEE-STTS-EEE
T ss_pred CeEeEecCCCCcccCceeeCCCcCcCccccCceEEEEecccccCCCcCceeeEeccchhhhhhhhhCCCccccCCCcEEE
Confidence 6899999864 99999999776 569999999883 27899999999999999999999999999999999
Q ss_pred EEEEEecCCcccCCceeEecCCCCCCCCcc-ccCCCCCeEEEEcCCCCCCCCeEEEEEecCCCCCccccccccCCCCCC-
Q 009287 100 QYEVRLQNGLECGGAYLKYLRPQEAGWVSK-EFDNESPYMIMFGPDKCGATNKVHFILKHKNPKSGEYIEHHLKNPPSV- 177 (538)
Q Consensus 100 QYeVk~q~~l~CGGaYiKLl~~~~~~~~~~-~f~~~TpY~IMFGPDkCG~~~kvHfI~~~knp~tg~~ee~~lk~p~~~- 177 (538)
|||||||++|+|||||||||+. ..++. +|+++|||+||||||+||.+++|||||||+||+|++++|+|+++++..
T Consensus 81 QYeVK~q~~idCGGaYIKLL~~---~~~~~~~f~~~TpY~IMFGPD~CG~~~kvHfI~~~~nP~~~~~~e~~l~~~p~~~ 157 (367)
T PF00262_consen 81 QYEVKFQQGIDCGGAYIKLLPA---SFDQEENFSDKTPYSIMFGPDKCGSSNKVHFIFRHKNPITGEIEEKHLKKPPISC 157 (367)
T ss_dssp EEEEEETT--SEEE--EEEEBT---TSSGGGG-STTS-ESEEEEEEEESTTEEEEEEEEEE-TTTEETTEEEE-SSSSB-
T ss_pred EEEEEeecceeccceEEEEecC---ccchhhhcCCCCCceEEeCCccCCCCceEEEEEEecCCCCCcccceecccCCccc
Confidence 9999999999999999999974 34555 999999999999999999999999999999999999999999999885
Q ss_pred CCCCCCceEEEEEcCCCceEEeecceeeccccccccCCCCCCCCCCCCCCCCCCCCCCCccccCccCCCCCCCCCCCCCC
Q 009287 178 PSDKLTHVYTAILKPDNELRILIDGEEKQKANFLAADDFQPPLIPEKTIPDPDDKKPEDWDERAKIPDPDAVKPEDWDED 257 (538)
Q Consensus 178 ~~D~~tHLYTLIl~pdntfeI~IDg~~~~~GsL~~~~df~P~~~ppk~I~DP~d~KPeDWdd~~~I~DP~a~KPeDWde~ 257 (538)
..|++||||||||+|||||+|+|||+++++|||+ +||+|||+||++|+||+|+||+|||||++|+||+|+||+||||+
T Consensus 158 ~~D~~tHlYTLii~~dntyeI~IDg~~~~~G~L~--~df~Pp~~ppk~I~Dp~d~KP~DW~d~~~I~Dp~~~KPedWdE~ 235 (367)
T PF00262_consen 158 FTDKLTHLYTLIIRPDNTYEIRIDGEVVKSGSLL--EDFDPPFNPPKEIDDPNDKKPEDWDDREKIPDPNAKKPEDWDED 235 (367)
T ss_dssp HHSSSEEEEEEEEETTTEEEEEETTEEEEEEEHH--HHSE--ESS-SCEE-TTT--TTT-TTTSEEC-SSTT--TTTSSS
T ss_pred ccCCCcceEEEEEcCCCeEEEEECCEEeeccccc--cccccCcCChhcccCccccCCcchhhhcccCCccccCccccccc
Confidence 5899999999999999999999999999999999 78999999999999999999999999999999999999999999
Q ss_pred CCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCccccCCCCCccCCCCCCCCCCCCcccCCc
Q 009287 258 APMEIEDEDAVKPEGWLDDDPEEIDDPEATKPEDWDDEEDGEWEAPKIDNPKCEAAPGCGEWKRPMKRNPAYKGKWHAPH 337 (538)
Q Consensus 258 ~p~~I~Dp~a~KP~dW~ddep~~I~DP~a~KPedWdd~~dG~W~~p~i~NP~c~~~~gcG~W~~P~I~NP~ykG~W~pp~ 337 (538)
+|++|+||+|+||++|+++||++|+||+|+||+|||+++||+|+||+|+||+|.. +|||+|++|||.||+|||+|+|||
T Consensus 236 ~p~~I~D~~a~kP~~W~edep~~IpDp~a~kP~dWdde~dGeWe~P~I~NP~C~~-~gCG~w~~p~i~Np~YkG~W~pp~ 314 (367)
T PF00262_consen 236 EPEFIPDPDAVKPEGWLEDEPEYIPDPEAKKPEDWDDEEDGEWEAPMIPNPKCKE-PGCGEWKPPMIKNPNYKGKWKPPM 314 (367)
T ss_dssp --SEEE-TT----SS-BSSS-SEEE-TT--S-TT--CCCCSS----EEE-CGGTT-S-BSS----EEE-TT--SS----E
T ss_pred CcccccCccccCCcchhhCCCcccCCCCCCCCCCCCccccCCccCCccCCCcccC-CCccccccccccCccccCCccccc
Confidence 9999999999999999999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCC-CCcccceeeEeEeeeccCceeeeeee
Q 009287 338 IDNPNYKGIWKPQQIPNPNYFELDKP-DFEPIAAVGIEIWTMQDGILFDNILI 389 (538)
Q Consensus 338 I~NP~YkG~W~P~~I~NP~y~~d~~p-~~~~i~~iG~ElW~~~~~~~FDNili 389 (538)
|+||||||+|+||+|+||+|++|.+| .+.+|++||||||||++|++||||||
T Consensus 315 I~NP~YkG~W~p~~I~NP~y~~d~~p~~~~~i~~ig~ElW~~~~~~~FDNi~i 367 (367)
T PF00262_consen 315 IPNPNYKGEWKPRKIPNPDYFEDPNPYNFEPIGAIGFELWQMSSGIIFDNILI 367 (367)
T ss_dssp EE-TT---S----EEE-TT--SSTTTT--S-EEEEEEEEEESSS-EEEEEEEE
T ss_pred cCCccccccccccccCCCcccCCCCccccCceeEEEEEEEeccCCceeeeEEC
Confidence 99999999999999999999999999 78999999999999999999999997
No 3
>KOG0674 consensus Calreticulin [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-109 Score=834.82 Aligned_cols=345 Identities=43% Similarity=0.834 Sum_probs=315.3
Q ss_pred HHHHHHHHhhhcccccCCCcccceeccc--CcccCCCceeccCCC-ccceEEEeCCCC----CCCceeeeCCCcchhhhh
Q 009287 11 FALLLFAAFVSFQLISASDDATILYESF--DESFEGRWIVSQKDE-YKGVWKHSKSEG----HEDYGLLVGEPAKKYAIV 83 (538)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~F~E~F--d~~~~~rWv~S~~~~-y~G~W~~~~~~~----~~D~GL~~~~~ak~yaIs 83 (538)
+..++|+++|.++ ++.+||.|.| +++|+.||+.|++++ ..|.|.++.+.. ..|+||++++++||||||
T Consensus 5 ~~~~~ll~~v~~~-----sa~Vyf~E~F~d~~~w~~rwv~skhk~~~fG~f~ls~g~f~g~~~~DkGiqTsqd~rfya~s 79 (406)
T KOG0674|consen 5 FWVLCLLALVALA-----SAEVYFKEEFLDEDGWENRWVQSKHKSRDFGKFVLSAGKFYGDEEKDKGIQTSQDARFYAIS 79 (406)
T ss_pred HHHHHHHHHHHHH-----hhhhhhhhhhcCCCCceEEEEEeeccccccCceEeccccccCcccccccccccccceeeeee
Confidence 3456667777777 4679999999 468999999999987 789999998764 469999999999999999
Q ss_pred cccCCCccCCCCcEEEEEEEEecCCcccCCceeEecCCCCCCCCccccCCCCCeEEEEcCCCCCC-CCeEEEEEecCCCC
Q 009287 84 KELDEPLSLKDGTVVLQYEVRLQNGLECGGAYLKYLRPQEAGWVSKEFDNESPYMIMFGPDKCGA-TNKVHFILKHKNPK 162 (538)
Q Consensus 84 ~~l~kp~~~~~k~LVvQYeVk~q~~l~CGGaYiKLl~~~~~~~~~~~f~~~TpY~IMFGPDkCG~-~~kvHfI~~~knp~ 162 (538)
++|+ ||+|++|||||||+|||+|+|+|||||||||+ +++++.+|+++|||.||||||+||. |+|||+||+|++.
T Consensus 80 a~F~-~FsnK~kTLv~q~tVkheQ~~dcgggyiKl~~---~d~Dq~~f~ges~y~iMfGPDICG~~tkKVhvil~ykg~- 154 (406)
T KOG0674|consen 80 AKFK-PFSNKGKTLVIQFTVKHEQKIDCGGGYIKLFP---ADLDQTDFHGESPYNIMFGPDICGFGTKKVHVILNYKGK- 154 (406)
T ss_pred cccc-cccccCceEEEEEEecccccccCCceeEEeee---cccchhhcCCCcccccccCCcccCCCCceEEEEEecccc-
Confidence 9996 79999999999999999999999999999997 5689999999999999999999997 8999999999863
Q ss_pred CccccccccCCCCCCCCCCCCceEEEEEcCCCceEEeecceeeccccccccCCCCCCCCCCCCCCCCCCCCCCCccccCc
Q 009287 163 SGEYIEHHLKNPPSVPSDKLTHVYTAILKPDNELRILIDGEEKQKANFLAADDFQPPLIPEKTIPDPDDKKPEDWDERAK 242 (538)
Q Consensus 163 tg~~ee~~lk~p~~~~~D~~tHLYTLIl~pdntfeI~IDg~~~~~GsL~~~~df~P~~~ppk~I~DP~d~KPeDWdd~~~ 242 (538)
+|.+++.++|++|.+||||||||||||||+|+|||+++.+|||. .||+ |+|+++|.||.++||+|||+|+.
T Consensus 155 -----nhlikK~i~Ck~D~~tHlYTlIlRPd~TYeVkIDn~~~esGsle--~DWd--ll~~KKikdP~a~KPedWDer~~ 225 (406)
T KOG0674|consen 155 -----NHLIKKDIRCKDDELTHLYTLILRPDATYEVKIDNQQVESGSLE--DDWD--LLPPKKIKDPDAKKPEDWDEREY 225 (406)
T ss_pred -----cchhccccccccCCcceeEEEEecCCCeeEEEEcccccccCccc--cccc--cccccccCCccccCcccchhhcc
Confidence 58899999999999999999999999999999999999999999 5664 89999999999999999999999
Q ss_pred cCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCccccCCCCCccCCC
Q 009287 243 IPDPDAVKPEDWDEDAPMEIEDEDAVKPEGWLDDDPEEIDDPEATKPEDWDDEEDGEWEAPKIDNPKCEAAPGCGEWKRP 322 (538)
Q Consensus 243 I~DP~a~KPeDWde~~p~~I~Dp~a~KP~dW~ddep~~I~DP~a~KPedWdd~~dG~W~~p~i~NP~c~~~~gcG~W~~P 322 (538)
|+||+++||+||+ .|++||||+|+||+|||+++||+|++ |
T Consensus 226 I~DpeD~Kp~dwe---------------------~pehipDpdakKpedWddemDGEWe~-------------------P 265 (406)
T KOG0674|consen 226 IPDPEDKKPQDWE---------------------KPEHIPDPDAKKPEDWDDEMDGEWEA-------------------P 265 (406)
T ss_pred CCCccccCccccc---------------------cccccCCcccCCcccccccccCCcCC-------------------C
Confidence 9999999999994 47888888899999999999877666 5
Q ss_pred CCCCCCCCCcccCCccCCCCCCCCCCCCCCCCCCCCCCCCC-CCcccceeeEeEeeeccCceeeeeeecCCHHHHHHHHH
Q 009287 323 MKRNPAYKGKWHAPHIDNPNYKGIWKPQQIPNPNYFELDKP-DFEPIAAVGIEIWTMQDGILFDNILISKDEKVAESYRA 401 (538)
Q Consensus 323 ~I~NP~ykG~W~pp~I~NP~YkG~W~P~~I~NP~y~~d~~p-~~~~i~~iG~ElW~~~~~~~FDNili~~d~~~a~~~~~ 401 (538)
||+||.|+|.|+|..|+||+|||.|.+++|.||.|..+... .|.+|++||||||||+||+||||||||+|+++|+++++
T Consensus 266 ~i~nPey~gewkPkqi~np~yKg~w~hp~i~npey~~d~~ly~~~ni~~lgldLWQVKSgtIFDN~LitdD~eyA~k~~~ 345 (406)
T KOG0674|consen 266 MIPNPEYKGEWKPKQIKNPAYKGKWIHPEIDNPEYPDDPELYHYENIGVLGLDLWQVKSGTIFDNFLITDDEEYAEKFAN 345 (406)
T ss_pred CCCCccccCccCcccccCccccceeeccccCCCcCCCCcceeeecccceeeeeEEEeecceeecceEecCCHHHHHHHHH
Confidence 67888999999999999999999999999999999877655 78999999999999999999999999999999999999
Q ss_pred hhcCCCchhHHHH
Q 009287 402 SAWKPKFDVEKEK 414 (538)
Q Consensus 402 ~t~~~k~~~e~~~ 414 (538)
+||+..+..|++.
T Consensus 346 eTwg~~k~~ek~~ 358 (406)
T KOG0674|consen 346 ETWGKTKDAEKEM 358 (406)
T ss_pred hhhcccccHHHHh
Confidence 9999888877754
No 4
>KOG0675 consensus Calnexin [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.2e-35 Score=307.98 Aligned_cols=217 Identities=35% Similarity=0.546 Sum_probs=161.5
Q ss_pred CccCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCccccCCCCCccC
Q 009287 241 AKIPDPDAVKPEDWDEDAPMEIEDEDAVKPEGWLDDDPEEIDDPEATKPEDWDDEEDGEWEAPKIDNPKCEAAPGCGEWK 320 (538)
Q Consensus 241 ~~I~DP~a~KPeDWde~~p~~I~Dp~a~KP~dW~ddep~~I~DP~a~KPedWdd~~dG~W~~p~i~NP~c~~~~gcG~W~ 320 (538)
.+|+||++.||+||||++ +||||+|+||+|||+++|.+|+|++++||++|.+++.-....|....|..|+....|+|+
T Consensus 248 ~eI~Dp~d~KP~dWDer~--kIpDpnAvKPdDWDE~~P~~Ipd~davkP~~Wledep~~I~DP~A~KPedWdee~dGeWe 325 (558)
T KOG0675|consen 248 KEIPDPSDKKPEDWDERA--KIPDPNAVKPDDWDEDAPLSIPDEDAVKPEGWLEDEPEYIPDPEAQKPEDWDEEEDGEWE 325 (558)
T ss_pred cccCCcccCCccchhhhh--cCCCcccCCccccCcCCCccCCCccccCCccccccCCcccCCcccCCCCCCCccccCccc
Confidence 579999999999999998 999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCC-----CcccCCccCCCCCCCCCCCCCCCCCCCCCCCCC------CC-cccceeeEeEee---eccCceee
Q 009287 321 RPMKRNPAYK-----GKWHAPHIDNPNYKGIWKPQQIPNPNYFELDKP------DF-EPIAAVGIEIWT---MQDGILFD 385 (538)
Q Consensus 321 ~P~I~NP~yk-----G~W~pp~I~NP~YkG~W~P~~I~NP~y~~d~~p------~~-~~i~~iG~ElW~---~~~~~~FD 385 (538)
+|||.||+|+ |+|+||||.||+|||.|.+++|.||+|.+.++| +| +.+.-.++.--+ ..=+++-.
T Consensus 326 ap~I~NP~C~~~~GCG~wk~p~I~NP~YKGkw~~pmI~NP~y~G~W~PRkI~NPdyfEd~~p~~~~pIsavglElWsMs~ 405 (558)
T KOG0675|consen 326 APMIINPKCKEASGCGEWKPPMINNPNYKGKWILPMIDNPNYQGIWKPRKIPNPDYFEDDKPFTLTPISAVGLELWSMSS 405 (558)
T ss_pred cccccCchhhcCCCCCcccCcccCCCccCCCCccccccCccccCccccccCCCcccccccCcccccchhhhhhhhhhcCC
Confidence 9999999995 999999999999999999999999999986655 33 333332332221 12244556
Q ss_pred eeeecCCHHHHHHHHHhhcCCCchhHHHHHHHHHhhcCCCCccchhHHHHHHHhhhhcchhhhHHhhhhhhhhhhhccCc
Q 009287 386 NILISKDEKVAESYRASAWKPKFDVEKEKLKAEEAAAGSDGLAGFQKTVFDLLYKVADIPFLDAYKLKIIDVIEKGEKQP 465 (538)
Q Consensus 386 Nili~~d~~~a~~~~~~t~~~k~~~e~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~~~~~~e~~~~~p 465 (538)
||++.+-.--.. .+.++.-+.....++... -...++ ..+++++++.+|
T Consensus 406 ~IlfdNi~i~~~----------------~e~a~~~~~~tw~~K~~~---------~~e~~~-------~~~~~~~~~~~~ 453 (558)
T KOG0675|consen 406 NILFDNIIITKD----------------IEVAEDIANFTWLLKAAA---------EREKPF-------VQQVMEAAEGHP 453 (558)
T ss_pred CceeceeEEecc----------------HHHHHHhhhhceeeehhh---------cccchH-------HHHHHhhccccc
Confidence 666655432111 112222222222221100 001111 236899999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhCCCC
Q 009287 466 NLTIGILVSVVAVIITVLFKIIFGGKK 492 (538)
Q Consensus 466 ~~~~~~~~~v~~~~~~~~~~~~~~~~~ 492 (538)
++|..+++++++.+.. +..||+++++
T Consensus 454 ~~w~~~i~~~~~~v~~-i~~~c~~~k~ 479 (558)
T KOG0675|consen 454 WLWAIYILTLLLPVAD-ITKFCAPVKS 479 (558)
T ss_pred hHHHHHHHHhhhhHhh-hhhccccccc
Confidence 9999998888865443 3456776443
No 5
>PF00262 Calreticulin: Calreticulin family; InterPro: IPR001580 Synonym(s): Calregulin, CRP55, HACBP Calreticulin [] is a high-capacity calcium-binding protein which is present in most tissues and located at the periphery of the endoplasmic (ER) and the sarcoplamic reticulum (SR) membranes. It probably plays a role in the storage of calcium in the lumen of the ER and SR and it may well have other important functions. Structurally, calreticulin is a protein of about 400 amino acid residues consisting of three domains: An N-terminal, probably globular, domain of about 180 amino acid residues (N-domain). A central domain of about 70 residues (P-domain) which contains three repeats of an acidic 17 amino acid motif. This region binds calcium with a low-capacity, but a high-affinity. A C-terminal domain rich in acidic residues and in lysine (C-domain). This region binds calcium with a high-capacity but a low-affinity. Calreticulin is evolutionarily related to several other calcium-binding proteins, including Onchocerca volvulus antigen RAL-1, calnexin [] and calmegin [].; GO: 0005509 calcium ion binding; PDB: 3POS_C 3DOW_B 3POW_A 1HHN_A 1K9C_A 1K91_A 3O0X_B 3O0W_A 3RG0_A 3O0V_A ....
Probab=99.97 E-value=9.8e-34 Score=294.31 Aligned_cols=123 Identities=49% Similarity=0.905 Sum_probs=71.3
Q ss_pred CCCCCCCCCCCCCCCccc--cCccCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCC
Q 009287 222 PEKTIPDPDDKKPEDWDE--RAKIPDPDAVKPEDWDEDAPMEIEDEDAVKPEGWLDDDPEEIDDPEATKPEDWDDEEDGE 299 (538)
Q Consensus 222 ppk~I~DP~d~KPeDWdd--~~~I~DP~a~KPeDWde~~p~~I~Dp~a~KP~dW~ddep~~I~DP~a~KPedWdd~~dG~ 299 (538)
-.++|+||+|+||+|||| .++|+||+|+||++|+|++|.+|+||+|+||+||+|++...+.-|...+|.|.. .+||+
T Consensus 217 d~~~I~Dp~~~KPedWdE~~p~~I~D~~a~kP~~W~edep~~IpDp~a~kP~dWdde~dGeWe~P~I~NP~C~~-~gCG~ 295 (367)
T PF00262_consen 217 DREKIPDPNAKKPEDWDEDEPEFIPDPDAVKPEGWLEDEPEYIPDPEAKKPEDWDDEEDGEWEAPMIPNPKCKE-PGCGE 295 (367)
T ss_dssp TTSEEC-SSTT--TTTSSS--SEEE-TT----SS-BSSS-SEEE-TT--S-TT--CCCCSS----EEE-CGGTT-S-BSS
T ss_pred hhcccCCccccCcccccccCcccccCccccCCcchhhCCCcccCCCCCCCCCCCCccccCCccCCccCCCcccC-CCccc
Confidence 377999999999999996 457999999999999999999999999999999999988888888888888888 89999
Q ss_pred CCCCCCCCCccccCCCCCccCCCCCCCCCCCCcccCCccCCCCCCCCCCCC
Q 009287 300 WEAPKIDNPKCEAAPGCGEWKRPMKRNPAYKGKWHAPHIDNPNYKGIWKPQ 350 (538)
Q Consensus 300 W~~p~i~NP~c~~~~gcG~W~~P~I~NP~ykG~W~pp~I~NP~YkG~W~P~ 350 (538)
|.+|||.||+| +|+|++|||.||+|||+|+|++|+||+|...=.|-
T Consensus 296 w~~p~i~Np~Y-----kG~W~pp~I~NP~YkG~W~p~~I~NP~y~~d~~p~ 341 (367)
T PF00262_consen 296 WKPPMIKNPNY-----KGKWKPPMIPNPNYKGEWKPRKIPNPDYFEDPNPY 341 (367)
T ss_dssp ----EEE-TT-------SS----EEE-TT---S----EEE-TT--SSTTTT
T ss_pred cccccccCccc-----cCCccccccCCccccccccccccCCCcccCCCCcc
Confidence 99999999999 89999999999999999999999999999875554
No 6
>KOG0674 consensus Calreticulin [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=2.5e-22 Score=204.20 Aligned_cols=249 Identities=30% Similarity=0.513 Sum_probs=160.0
Q ss_pred cccCCCccCCCCcEEEEEEEEecCCcccCCceeEecCCCCCCCCccc----c--CCCCCeEEEEcC--CC--CCCCCeEE
Q 009287 84 KELDEPLSLKDGTVVLQYEVRLQNGLECGGAYLKYLRPQEAGWVSKE----F--DNESPYMIMFGP--DK--CGATNKVH 153 (538)
Q Consensus 84 ~~l~kp~~~~~k~LVvQYeVk~q~~l~CGGaYiKLl~~~~~~~~~~~----f--~~~TpY~IMFGP--Dk--CG~~~kvH 153 (538)
-.|.+-|...+...+-+..+++.+. |+|+|+.+.+.- +..++ . +.+.-|.+|++= +. -|.|--++
T Consensus 21 Vyf~E~F~d~~~w~~rwv~skhk~~--~fG~f~ls~g~f---~g~~~~DkGiqTsqd~rfya~sa~F~~FsnK~kTLv~q 95 (406)
T KOG0674|consen 21 VYFKEEFLDEDGWENRWVQSKHKSR--DFGKFVLSAGKF---YGDEEKDKGIQTSQDARFYAISAKFKPFSNKGKTLVIQ 95 (406)
T ss_pred hhhhhhhcCCCCceEEEEEeecccc--ccCceEeccccc---cCcccccccccccccceeeeeecccccccccCceEEEE
Confidence 3567788888899999999999877 999999887532 22222 2 222357888752 21 12244566
Q ss_pred EEEecCCCCC--ccccccccCCCCCCCCCC----CCceEEEEEcCCCceEEeecceeecccc----------ccc-----
Q 009287 154 FILKHKNPKS--GEYIEHHLKNPPSVPSDK----LTHVYTAILKPDNELRILIDGEEKQKAN----------FLA----- 212 (538)
Q Consensus 154 fI~~~knp~t--g~~ee~~lk~p~~~~~D~----~tHLYTLIl~pdntfeI~IDg~~~~~Gs----------L~~----- 212 (538)
|-++|-.-.. |-| +|.-+ +-.|. --.-|..+.-|| |.|-..++-. |+.
T Consensus 96 ~tVkheQ~~dcgggy----iKl~~-~d~Dq~~f~ges~y~iMfGPD------ICG~~tkKVhvil~ykg~nhlikK~i~C 164 (406)
T KOG0674|consen 96 FTVKHEQKIDCGGGY----IKLFP-ADLDQTDFHGESPYNIMFGPD------ICGFGTKKVHVILNYKGKNHLIKKDIRC 164 (406)
T ss_pred EEecccccccCCcee----EEeee-cccchhhcCCCcccccccCCc------ccCCCCceEEEEEecccccchhcccccc
Confidence 6677632221 222 22111 11121 123455555565 4443222111 110
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCccccCccCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 009287 213 ADDFQPPLIPEKTIPDPDDKKPEDWDERAKIPDPDAVKPEDWDEDAPMEIEDEDAVKPEGWLDDDPEEIDDPEATKPEDW 292 (538)
Q Consensus 213 ~~df~P~~~ppk~I~DP~d~KPeDWdd~~~I~DP~a~KPeDWde~~p~~I~Dp~a~KP~dW~ddep~~I~DP~a~KPedW 292 (538)
..|=-+.|.. -|-.|+++-----|... =.+++-.+|||...|.+|.||.|.||+|| |+.++|+||+..||++|
T Consensus 165 k~D~~tHlYT--lIlRPd~TYeVkIDn~~---~esGsle~DWdll~~KKikdP~a~KPedW--Der~~I~DpeD~Kp~dw 237 (406)
T KOG0674|consen 165 KDDELTHLYT--LILRPDATYEVKIDNQQ---VESGSLEDDWDLLPPKKIKDPDAKKPEDW--DEREYIPDPEDKKPQDW 237 (406)
T ss_pred ccCCcceeEE--EEecCCCeeEEEEcccc---cccCccccccccccccccCCccccCcccc--hhhccCCCccccCcccc
Confidence 0000000000 13334333222222111 13577789999999999999999999999 45899999999999999
Q ss_pred CCcCCCCCCCCCCCCCccccCCCCCccCCCCCCCCCCCCcccCCccCCCCCCCCCCCCCCCCCCCCC------CCCCCCc
Q 009287 293 DDEEDGEWEAPKIDNPKCEAAPGCGEWKRPMKRNPAYKGKWHAPHIDNPNYKGIWKPQQIPNPNYFE------LDKPDFE 366 (538)
Q Consensus 293 dd~~dG~W~~p~i~NP~c~~~~gcG~W~~P~I~NP~ykG~W~pp~I~NP~YkG~W~P~~I~NP~y~~------d~~p~~~ 366 (538)
+- +-.|++|.. ++|..++-+..|.|.||||+||.|+|+|+|++|.||+|++ +.||.|.
T Consensus 238 e~-------pehipDpda---------kKpedWddemDGEWe~P~i~nPey~gewkPkqi~np~yKg~w~hp~i~npey~ 301 (406)
T KOG0674|consen 238 EK-------PEHIPDPDA---------KKPEDWDDEMDGEWEAPMIPNPEYKGEWKPKQIKNPAYKGKWIHPEIDNPEYP 301 (406)
T ss_pred cc-------ccccCCccc---------CCcccccccccCCcCCCCCCCccccCccCcccccCccccceeeccccCCCcCC
Confidence 84 348999988 7899999999999999999999999999999999999995 5677776
Q ss_pred cccee
Q 009287 367 PIAAV 371 (538)
Q Consensus 367 ~i~~i 371 (538)
+-..+
T Consensus 302 ~d~~l 306 (406)
T KOG0674|consen 302 DDPEL 306 (406)
T ss_pred CCcce
Confidence 54444
No 7
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=87.91 E-value=0.5 Score=47.56 Aligned_cols=23 Identities=22% Similarity=0.502 Sum_probs=11.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhh
Q 009287 466 NLTIGILVSVVAVIITVLFKIIF 488 (538)
Q Consensus 466 ~~~~~~~~~v~~~~~~~~~~~~~ 488 (538)
..++.++++||+|+|+++..++|
T Consensus 13 N~iLNiaI~IV~lLIiiva~~lf 35 (217)
T PF07423_consen 13 NKILNIAIGIVSLLIIIVAYQLF 35 (217)
T ss_pred hhhHHHHHHHHHHHHHHHhhhhe
Confidence 44555555555544444444444
No 8
>PF14851 FAM176: FAM176 family
Probab=71.70 E-value=11 Score=36.30 Aligned_cols=15 Identities=40% Similarity=0.255 Sum_probs=6.6
Q ss_pred hhhHHhhhhhhhhhhh
Q 009287 446 FLDAYKLKIIDVIEKG 461 (538)
Q Consensus 446 fl~~~~~~~~~~~e~~ 461 (538)
.|++|.. |.+.+|.+
T Consensus 8 sLaaya~-I~~~PE~~ 22 (153)
T PF14851_consen 8 SLAAYAH-IRDNPERF 22 (153)
T ss_pred HHHHHHH-HHhChHHH
Confidence 3445553 44444444
No 9
>PF06439 DUF1080: Domain of Unknown Function (DUF1080); InterPro: IPR010496 This is a family of proteins of unknown function.; PDB: 3IMM_B 3NMB_A 3S5Q_A 3OSD_A 3HBK_A 3H3L_A 3U1X_A.
Probab=66.33 E-value=1.1e+02 Score=28.23 Aligned_cols=142 Identities=12% Similarity=0.197 Sum_probs=68.1
Q ss_pred ccCcccCCCceeccCCCccceEEEeCCCCCCCceee---eCCCcchhhhhcccCCCccCCCCcEEEEEEEEecCCcccCC
Q 009287 37 SFDESFEGRWIVSQKDEYKGVWKHSKSEGHEDYGLL---VGEPAKKYAIVKELDEPLSLKDGTVVLQYEVRLQNGLECGG 113 (538)
Q Consensus 37 ~Fd~~~~~rWv~S~~~~y~G~W~~~~~~~~~D~GL~---~~~~ak~yaIs~~l~kp~~~~~k~LVvQYeVk~q~~l~CGG 113 (538)
=|+..-.+.|.........+.|.++.+. |+ .......+.++. +. =++++|+.++|+..+- .+|
T Consensus 5 lf~g~~l~gW~~~~~~~~~~~~~v~dG~------l~~~~~~~~~~~~l~~~---~~----~~df~l~~d~k~~~~~-~sG 70 (185)
T PF06439_consen 5 LFNGKDLDGWKIYGGGWFEGGWSVKDGV------LVSNGSSGSGGGYLYTD---KK----FSDFELEVDFKITPGG-NSG 70 (185)
T ss_dssp SS-SSCGTTEEETTSSSETTTEEEETTE------EE-GGGGESSS--EEES---SE----BSSEEEEEEEEE-TT--EEE
T ss_pred eECCCCHHHCeeCCCCccccCcEeeCCE------EEecccCCCCcceEEEC---Cc----cccEEEEEEEEECCCC-CeE
Confidence 4664445789888766556788777542 23 111222222222 22 2568888888883322 334
Q ss_pred ceeEecCCCCCCCCccccCCCCCeEEEEcCCCCCCCCeEEEEEecCCCCCccccc---ccc-CCCCCCCCCCCCceEEEE
Q 009287 114 AYLKYLRPQEAGWVSKEFDNESPYMIMFGPDKCGATNKVHFILKHKNPKSGEYIE---HHL-KNPPSVPSDKLTHVYTAI 189 (538)
Q Consensus 114 aYiKLl~~~~~~~~~~~f~~~TpY~IMFGPDkCG~~~kvHfI~~~knp~tg~~ee---~~l-k~p~~~~~D~~tHLYTLI 189 (538)
=|+..-+ .........-|.+-..++.++ ....-.+|.... ... ...........-|=|+++
T Consensus 71 i~~r~~~------~~~~~~~~~gy~~~i~~~~~~---------~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~W~~~~I~ 135 (185)
T PF06439_consen 71 IFFRAQS------PGDGQDWNNGYEFQIDNSGGG---------TGLPNSTGSLYDEPPWQLEPSVNVAIPPGEWNTVRIV 135 (185)
T ss_dssp EEEEESS------ECCSSGGGTSEEEEEE-TTTC---------STTTTSTTSBTTTB-TCB-SSS--S--TTSEEEEEEE
T ss_pred EEEEecc------ccCCCCcceEEEEEEECCCCc---------cCCCCccceEEEeccccccccccccCCCCceEEEEEE
Confidence 4433331 011222234488888888776 111223444321 011 111111222334445555
Q ss_pred EcCCCceEEeecceeeccc
Q 009287 190 LKPDNELRILIDGEEKQKA 208 (538)
Q Consensus 190 l~pdntfeI~IDg~~~~~G 208 (538)
++ .|++.+.|||+.+..-
T Consensus 136 ~~-g~~i~v~vnG~~v~~~ 153 (185)
T PF06439_consen 136 VK-GNRITVWVNGKPVADF 153 (185)
T ss_dssp EE-TTEEEEEETTEEEEEE
T ss_pred EE-CCEEEEEECCEEEEEE
Confidence 54 7889999999988654
No 10
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=65.34 E-value=4.5 Score=37.51 Aligned_cols=8 Identities=13% Similarity=0.098 Sum_probs=3.6
Q ss_pred HHHHhhCC
Q 009287 483 LFKIIFGG 490 (538)
Q Consensus 483 ~~~~~~~~ 490 (538)
|+.||+++
T Consensus 83 li~y~irR 90 (122)
T PF01102_consen 83 LISYCIRR 90 (122)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 34455543
No 11
>KOG3054 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.80 E-value=9.3 Score=39.63 Aligned_cols=13 Identities=46% Similarity=0.529 Sum_probs=7.3
Q ss_pred hcccCCcccccCC
Q 009287 525 ETAAAPARRRRRD 537 (538)
Q Consensus 525 ~~~~~~~~r~rr~ 537 (538)
.+-++-|||.||+
T Consensus 55 ~~R~~gr~R~rrd 67 (299)
T KOG3054|consen 55 VARAGGRRRMRRD 67 (299)
T ss_pred hhhhccccccccC
Confidence 3555556666654
No 12
>PRK10404 hypothetical protein; Provisional
Probab=41.49 E-value=46 Score=29.87 Aligned_cols=28 Identities=21% Similarity=0.170 Sum_probs=20.5
Q ss_pred hhhhhhhhhhhccCchhHHHHHHHHHHH
Q 009287 451 KLKIIDVIEKGEKQPNLTIGILVSVVAV 478 (538)
Q Consensus 451 ~~~~~~~~e~~~~~p~~~~~~~~~v~~~ 478 (538)
+......-+.+.++||-.+|+.++|.++
T Consensus 66 k~aa~~td~yV~e~Pw~avGiaagvGll 93 (101)
T PRK10404 66 KQAVYRADDYVHEKPWQGIGVGAAVGLV 93 (101)
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 4434455677889999999988877754
No 13
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=40.93 E-value=24 Score=35.79 Aligned_cols=25 Identities=20% Similarity=0.267 Sum_probs=13.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhCCC
Q 009287 466 NLTIGILVSVVAVIITVLFKIIFGGK 491 (538)
Q Consensus 466 ~~~~~~~~~v~~~~~~~~~~~~~~~~ 491 (538)
+++|+|++.| ++|++..++|.-...
T Consensus 17 NiaI~IV~lL-Iiiva~~lf~~~~~~ 41 (217)
T PF07423_consen 17 NIAIGIVSLL-IIIVAYQLFFGGDDS 41 (217)
T ss_pred HHHHHHHHHH-HHHHhhhheecCCCc
Confidence 3456555533 345555556766544
No 14
>PF07210 DUF1416: Protein of unknown function (DUF1416); InterPro: IPR010814 This family consists of several hypothetical bacterial proteins of around 100 residues in length. Members of this family appear to be Actinomycete specific. The function of this family is unknown.
Probab=39.99 E-value=42 Score=29.61 Aligned_cols=27 Identities=30% Similarity=0.572 Sum_probs=24.1
Q ss_pred CCcEEEEEEEEecCCcccCCceeEecCC
Q 009287 94 DGTVVLQYEVRLQNGLECGGAYLKYLRP 121 (538)
Q Consensus 94 ~k~LVvQYeVk~q~~l~CGGaYiKLl~~ 121 (538)
.|..|||=.|+ ..|--.||||+.||..
T Consensus 5 ~ke~VItG~V~-~~G~Pv~gAyVRLLD~ 31 (85)
T PF07210_consen 5 EKETVITGRVT-RDGEPVGGAYVRLLDS 31 (85)
T ss_pred cceEEEEEEEe-cCCcCCCCeEEEEEcC
Confidence 57799999999 8888899999999964
No 15
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=37.86 E-value=42 Score=25.57 Aligned_cols=23 Identities=17% Similarity=0.375 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCC
Q 009287 469 IGILVSVVAVIITVLFKIIFGGK 491 (538)
Q Consensus 469 ~~~~~~v~~~~~~~~~~~~~~~~ 491 (538)
+|++++++++++.++...|+-.+
T Consensus 10 v~V~vg~~iiii~~~~YaCcykk 32 (38)
T PF02439_consen 10 VAVVVGMAIIIICMFYYACCYKK 32 (38)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcc
Confidence 34444444444444444555433
No 16
>PRK10132 hypothetical protein; Provisional
Probab=37.78 E-value=34 Score=31.12 Aligned_cols=23 Identities=13% Similarity=0.031 Sum_probs=17.9
Q ss_pred hhhhhhccCchhHHHHHHHHHHH
Q 009287 456 DVIEKGEKQPNLTIGILVSVVAV 478 (538)
Q Consensus 456 ~~~e~~~~~p~~~~~~~~~v~~~ 478 (538)
..-+.+.++||-.+||.++|.++
T Consensus 77 ~~~~~V~~~Pw~svgiaagvG~l 99 (108)
T PRK10132 77 CADTFVRERPWCSVGTAAAVGIF 99 (108)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHH
Confidence 44467788999999998887754
No 17
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=36.52 E-value=42 Score=28.44 Aligned_cols=21 Identities=24% Similarity=0.433 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhC
Q 009287 469 IGILVSVVAVIITVLFKIIFG 489 (538)
Q Consensus 469 ~~~~~~v~~~~~~~~~~~~~~ 489 (538)
++++++++++++++++.+++.
T Consensus 4 ~~~~~g~~~ll~~v~~~~~~~ 24 (75)
T PF14575_consen 4 ASIIVGVLLLLVLVIIVIVCF 24 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHCCC
T ss_pred ehHHHHHHHHHHhheeEEEEE
Confidence 334444444433333334443
No 18
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=36.20 E-value=37 Score=31.00 Aligned_cols=21 Identities=14% Similarity=0.275 Sum_probs=17.0
Q ss_pred hhhccCchhHHHHHHHHHHHH
Q 009287 459 EKGEKQPNLTIGILVSVVAVI 479 (538)
Q Consensus 459 e~~~~~p~~~~~~~~~v~~~~ 479 (538)
+.+.++||-.+|+.++|.+++
T Consensus 77 ~yV~e~PWq~VGvaAaVGlll 97 (104)
T COG4575 77 DYVRENPWQGVGVAAAVGLLL 97 (104)
T ss_pred HHHHcCCchHHHHHHHHHHHH
Confidence 567789999999998887543
No 19
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=35.69 E-value=56 Score=28.12 Aligned_cols=24 Identities=17% Similarity=0.163 Sum_probs=18.5
Q ss_pred hhhhhhhccCchhHHHHHHHHHHH
Q 009287 455 IDVIEKGEKQPNLTIGILVSVVAV 478 (538)
Q Consensus 455 ~~~~e~~~~~p~~~~~~~~~v~~~ 478 (538)
...-+.++++||-.+++.+++.++
T Consensus 63 ~~~~~~V~e~P~~svgiAagvG~l 86 (94)
T PF05957_consen 63 EQTEDYVRENPWQSVGIAAGVGFL 86 (94)
T ss_pred HHHHHHHHHChHHHHHHHHHHHHH
Confidence 345578899999998888877754
No 20
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=32.31 E-value=32 Score=32.87 Aligned_cols=11 Identities=27% Similarity=0.830 Sum_probs=4.5
Q ss_pred HHHHHHHHHHH
Q 009287 468 TIGILVSVVAV 478 (538)
Q Consensus 468 ~~~~~~~v~~~ 478 (538)
+++++++|++|
T Consensus 81 ivgvi~~Vi~I 91 (179)
T PF13908_consen 81 IVGVICGVIAI 91 (179)
T ss_pred eeehhhHHHHH
Confidence 34444434433
No 21
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=32.25 E-value=11 Score=36.41 Aligned_cols=26 Identities=15% Similarity=0.336 Sum_probs=13.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhCCC
Q 009287 466 NLTIGILVSVVAVIITVLFKIIFGGK 491 (538)
Q Consensus 466 ~~~~~~~~~v~~~~~~~~~~~~~~~~ 491 (538)
++.+|+.++|++++++++|.||..++
T Consensus 53 GvVVGVGg~ill~il~lvf~~c~r~k 78 (154)
T PF04478_consen 53 GVVVGVGGPILLGILALVFIFCIRRK 78 (154)
T ss_pred EEEecccHHHHHHHHHhheeEEEecc
Confidence 34455555555555555555555544
No 22
>PHA02513 V1 structural protein V1; Reviewed
Probab=31.10 E-value=1.1e+02 Score=28.51 Aligned_cols=31 Identities=19% Similarity=0.386 Sum_probs=24.7
Q ss_pred HHHHHhhhhcchhhhHHhhhhhhhhhhhccCchhH
Q 009287 434 VFDLLYKVADIPFLDAYKLKIIDVIEKGEKQPNLT 468 (538)
Q Consensus 434 ~~~~~~~~~~~~fl~~~~~~~~~~~e~~~~~p~~~ 468 (538)
-..+|++..|.+.++-++ .++|.++.+|-++
T Consensus 30 a~kif~qtwdgnii~sa~----~fveva~~npklt 60 (135)
T PHA02513 30 ATKIFYQTWDGNIISSAR----RFVEVAKANPKLT 60 (135)
T ss_pred HHHHHHHhcCchHHHHHH----HHHHHHhcCCccc
Confidence 356788888888887766 4899999999875
No 23
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=30.72 E-value=25 Score=32.08 Aligned_cols=7 Identities=14% Similarity=-0.073 Sum_probs=3.2
Q ss_pred hhHHHHH
Q 009287 5 MAVSLRF 11 (538)
Q Consensus 5 ~~~~~~~ 11 (538)
||++|++
T Consensus 1 RW~l~~i 7 (130)
T PF12273_consen 1 RWVLFAI 7 (130)
T ss_pred CeeeHHH
Confidence 4554433
No 24
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=30.61 E-value=78 Score=24.16 Aligned_cols=24 Identities=29% Similarity=0.585 Sum_probs=15.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhh
Q 009287 465 PNLTIGILVSVVAVIITVLFKIIF 488 (538)
Q Consensus 465 p~~~~~~~~~v~~~~~~~~~~~~~ 488 (538)
|...+++.++|++.++++++.+++
T Consensus 2 p~s~IaIIv~V~vg~~iiii~~~~ 25 (38)
T PF02439_consen 2 PSSTIAIIVAVVVGMAIIIICMFY 25 (38)
T ss_pred CcchhhHHHHHHHHHHHHHHHHHH
Confidence 556788888888776665544443
No 25
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=27.17 E-value=43 Score=32.50 Aligned_cols=11 Identities=36% Similarity=0.335 Sum_probs=5.1
Q ss_pred HHHHHhhCCCC
Q 009287 482 VLFKIIFGGKK 492 (538)
Q Consensus 482 ~~~~~~~~~~~ 492 (538)
+++.+|.++|+
T Consensus 47 vli~lcssRKk 57 (189)
T PF05568_consen 47 VLIYLCSSRKK 57 (189)
T ss_pred HHHHHHhhhhH
Confidence 33444555554
No 26
>PRK00523 hypothetical protein; Provisional
Probab=26.92 E-value=52 Score=28.23 Aligned_cols=26 Identities=8% Similarity=0.201 Sum_probs=14.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhCCC
Q 009287 466 NLTIGILVSVVAVIITVLFKIIFGGK 491 (538)
Q Consensus 466 ~~~~~~~~~v~~~~~~~~~~~~~~~~ 491 (538)
++++++++++++++++++..|++.++
T Consensus 3 ~~~l~I~l~i~~li~G~~~Gffiark 28 (72)
T PRK00523 3 AIGLALGLGIPLLIVGGIIGYFVSKK 28 (72)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555566566666655665543
No 27
>PF07010 Endomucin: Endomucin; InterPro: IPR010740 This family consists of several mammalian endomucin proteins. Endomucin is an early endothelial-specific antigen that is also expressed on putative hematopoietic progenitor cells.
Probab=25.65 E-value=1.2e+02 Score=31.48 Aligned_cols=26 Identities=8% Similarity=0.268 Sum_probs=14.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhCCCC
Q 009287 467 LTIGILVSVVAVIITVLFKIIFGGKK 492 (538)
Q Consensus 467 ~~~~~~~~v~~~~~~~~~~~~~~~~~ 492 (538)
+++.|++++++++++-|+.+||....
T Consensus 194 vIaliVitl~vf~LvgLyr~C~k~dP 219 (259)
T PF07010_consen 194 VIALIVITLSVFTLVGLYRMCWKTDP 219 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 34444555554445556788886443
No 28
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=25.00 E-value=60 Score=33.77 Aligned_cols=17 Identities=35% Similarity=0.503 Sum_probs=11.8
Q ss_pred CCcEEEEEEEEecCCccc
Q 009287 94 DGTVVLQYEVRLQNGLEC 111 (538)
Q Consensus 94 ~k~LVvQYeVk~q~~l~C 111 (538)
..+-+-.|.|+-.++. |
T Consensus 104 ~~p~~g~y~V~~~n~~-C 120 (306)
T PF01299_consen 104 PSPSVGTYSVTNGNGT-C 120 (306)
T ss_pred CCCccceEEEECCCce-E
Confidence 3445777888877766 7
No 29
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=24.20 E-value=1.4e+02 Score=23.00 Aligned_cols=32 Identities=16% Similarity=0.393 Sum_probs=17.4
Q ss_pred hhhhhhccCchhHHHHHHHHHHHHHHHHHHHh
Q 009287 456 DVIEKGEKQPNLTIGILVSVVAVIITVLFKII 487 (538)
Q Consensus 456 ~~~e~~~~~p~~~~~~~~~v~~~~~~~~~~~~ 487 (538)
+.......++..++|+++.+++++++++.-++
T Consensus 7 ~~~~~f~~nk~a~~gl~il~~~vl~ai~~p~~ 38 (56)
T PF12911_consen 7 DAWRRFRRNKLAVIGLIILLILVLLAIFAPFI 38 (56)
T ss_pred HHHHHHHhCchHHHHHHHHHHHHHHHHHHHHc
Confidence 34455556677776666555544444444333
No 30
>PF15069 FAM163: FAM163 family
Probab=23.92 E-value=57 Score=31.33 Aligned_cols=16 Identities=38% Similarity=0.532 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 009287 468 TIGILVSVVAVIITVL 483 (538)
Q Consensus 468 ~~~~~~~v~~~~~~~~ 483 (538)
++|||++|+|+.|+++
T Consensus 9 tGgILAtVILLcIIaV 24 (143)
T PF15069_consen 9 TGGILATVILLCIIAV 24 (143)
T ss_pred echHHHHHHHHHHHHH
Confidence 5788888876555443
No 31
>PF14851 FAM176: FAM176 family
Probab=23.32 E-value=2.6e+02 Score=27.13 Aligned_cols=13 Identities=8% Similarity=0.013 Sum_probs=7.4
Q ss_pred hhhhhccCchhHH
Q 009287 457 VIEKGEKQPNLTI 469 (538)
Q Consensus 457 ~~e~~~~~p~~~~ 469 (538)
....++.+|.-++
T Consensus 11 aya~I~~~PE~~a 23 (153)
T PF14851_consen 11 AYAHIRDNPERFA 23 (153)
T ss_pred HHHHHHhChHHHH
Confidence 4455666776544
No 32
>PF11025 GP40: Glycoprotein GP40 of Cryptosporidium; InterPro: IPR021035 This entry represents proteins that are highly conserved in Cryptosporidium spp. Many members are annotated as being a 60 kDa glycoprotein.
Probab=22.65 E-value=1.7e+02 Score=28.22 Aligned_cols=73 Identities=23% Similarity=0.406 Sum_probs=41.1
Q ss_pred CcccCCceeEecCCCCCCCCccccCCCCCeEEEEcCCCCCCCCeEEEEEecCCCCCccccccccCCCCCCCCCCCCceEE
Q 009287 108 GLECGGAYLKYLRPQEAGWVSKEFDNESPYMIMFGPDKCGATNKVHFILKHKNPKSGEYIEHHLKNPPSVPSDKLTHVYT 187 (538)
Q Consensus 108 ~l~CGGaYiKLl~~~~~~~~~~~f~~~TpY~IMFGPDkCG~~~kvHfI~~~knp~tg~~ee~~lk~p~~~~~D~~tHLYT 187 (538)
.-+||-.|+--|.... -...+... -|+|.+.|.+-...---.. ++|+... -|
T Consensus 5 keeCgtsFvmWf~~Gt---pvaTlkcg-~YTiVyAP~k~~t~PaPrY-------ISGev~~-----------------Vt 56 (165)
T PF11025_consen 5 KEECGTSFVMWFGEGT---PVATLKCG-DYTIVYAPEKDQTDPAPRY-------ISGEVKS-----------------VT 56 (165)
T ss_pred hhhcceeEEEEecCCc---ceEEEecC-CEEEEEccccCCCCCCCce-------eecceEE-----------------EE
Confidence 3589999998886322 22233222 3888888877321111111 2333211 11
Q ss_pred EEEcCCCceEEeecceeecccc
Q 009287 188 AILKPDNELRILIDGEEKQKAN 209 (538)
Q Consensus 188 LIl~pdntfeI~IDg~~~~~Gs 209 (538)
+ -+.|+|..|.|||+....-+
T Consensus 57 F-eksd~TvkIkvd~kefstlS 77 (165)
T PF11025_consen 57 F-EKSDSTVKIKVDGKEFSTLS 77 (165)
T ss_pred E-eccCCeEEEEECCeEccccc
Confidence 1 23689999999999876544
No 33
>PF14083 PGDYG: PGDYG protein
Probab=22.57 E-value=77 Score=28.65 Aligned_cols=58 Identities=24% Similarity=0.582 Sum_probs=32.6
Q ss_pred cCCCceeccCCCccceEEEeCCC-CCCCceeeeCCCcchhhhhcccCCCccCCC-----------CcEEEEEE
Q 009287 42 FEGRWIVSQKDEYKGVWKHSKSE-GHEDYGLLVGEPAKKYAIVKELDEPLSLKD-----------GTVVLQYE 102 (538)
Q Consensus 42 ~~~rWv~S~~~~y~G~W~~~~~~-~~~D~GL~~~~~ak~yaIs~~l~kp~~~~~-----------k~LVvQYe 102 (538)
-.+||++|... ++-+..-.... .+|+.|...-.. --.++..++.||+..- .+-++||.
T Consensus 16 tGdRWvVsr~r-Fd~ky~~~~~~l~~G~~g~Y~nrp--~vvla~~m~~~f~iarS~~gdvl~g~agDw~mqya 85 (102)
T PF14083_consen 16 TGDRWVVSRER-FDAKYVPARPSLAHGQPGAYRNRP--VVVLARQMDEPFSIARSAGGDVLHGKAGDWLMQYA 85 (102)
T ss_pred CCCeEEeeHHH-cccccccccccccCCCCcceecCC--eeeeccccCcchhhhhhcCCCccccCCcceEEEeC
Confidence 35799999863 22222222222 256666655444 2356677777777531 35677776
No 34
>PRK01844 hypothetical protein; Provisional
Probab=22.23 E-value=72 Score=27.41 Aligned_cols=25 Identities=36% Similarity=0.554 Sum_probs=13.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhCCC
Q 009287 467 LTIGILVSVVAVIITVLFKIIFGGK 491 (538)
Q Consensus 467 ~~~~~~~~v~~~~~~~~~~~~~~~~ 491 (538)
+|++|++.++.++++++..|++.++
T Consensus 3 ~~~~I~l~I~~li~G~~~Gff~ark 27 (72)
T PRK01844 3 IWLGILVGVVALVAGVALGFFIARK 27 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555566666555655443
No 35
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=21.60 E-value=1.1e+02 Score=28.89 Aligned_cols=19 Identities=21% Similarity=0.221 Sum_probs=11.8
Q ss_pred CchhHHHHHHHHHHHHHHH
Q 009287 464 QPNLTIGILVSVVAVIITV 482 (538)
Q Consensus 464 ~p~~~~~~~~~v~~~~~~~ 482 (538)
.||....+++++++++|++
T Consensus 33 tpWNysiL~Ls~vvlvi~~ 51 (125)
T PF15048_consen 33 TPWNYSILALSFVVLVISF 51 (125)
T ss_pred CCcchHHHHHHHHHHHHHH
Confidence 5677766666666555554
No 36
>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences. p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].
Probab=21.45 E-value=57 Score=29.45 Aligned_cols=19 Identities=11% Similarity=0.212 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHhhCCC
Q 009287 473 VSVVAVIITVLFKIIFGGK 491 (538)
Q Consensus 473 ~~v~~~~~~~~~~~~~~~~ 491 (538)
.++++++|++.+.+||..+
T Consensus 49 GG~iLilIii~Lv~CC~~K 67 (98)
T PF07204_consen 49 GGLILILIIIALVCCCRAK 67 (98)
T ss_pred chhhhHHHHHHHHHHhhhh
Confidence 3444444444444566433
No 37
>PF04995 CcmD: Heme exporter protein D (CcmD); InterPro: IPR007078 The CcmD protein is part of a C-type cytochrome biogenesis operon []. The exact function of this protein is uncertain. It has been proposed that CcmC, CcmD and CcmE interact directly with each other, establishing a cytoplasm to periplasm haem delivery pathway for cytochrome c maturation []. This protein is found fused to CcmE in P52224 from SWISSPROT. These proteins contain a predicted transmembrane helix.; GO: 0006810 transport, 0016021 integral to membrane
Probab=20.82 E-value=1.2e+02 Score=23.25 Aligned_cols=17 Identities=6% Similarity=-0.083 Sum_probs=11.5
Q ss_pred hhHHHHHHHHHHHHHHH
Q 009287 466 NLTIGILVSVVAVIITV 482 (538)
Q Consensus 466 ~~~~~~~~~v~~~~~~~ 482 (538)
.+|.+++++++++++.+
T Consensus 6 yVW~sYg~t~~~l~~l~ 22 (46)
T PF04995_consen 6 YVWSSYGVTALVLAGLI 22 (46)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56888888887654443
Done!