BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009288
(538 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1BO1|A Chain A, Phosphatidylinositol Phosphate Kinase Type Ii Beta
pdb|1BO1|B Chain B, Phosphatidylinositol Phosphate Kinase Type Ii Beta
Length = 416
Score = 99.8 bits (247), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 61/185 (32%), Positives = 100/185 (54%), Gaps = 9/185 (4%)
Query: 321 LQLGIRHSVGK--HASVMRELRQSDFEPKEKFWTRFPPEGSKFTPPHQSMDFRWKDYCPM 378
L G+ H++ + + V L DF K +++ + F + F++K+YCPM
Sbjct: 46 LMWGVNHTINELSNVPVPVMLMPDDF----KAYSKIKVDNHLFNKENLPSRFKFKEYCPM 101
Query: 379 VFRHLRELFAIDPADYMLAICGDDALRELSSPGKSGSFFYLTQDDRFMIKTVKKSEVKVL 438
VFR+LRE F ID DY ++ + S G+ G+ F T D RF+IKTV +V +
Sbjct: 102 VFRNLRERFGIDDQDYQNSVTRSAPINS-DSQGRCGTRFLTTYDRRFVIKTVSSEDVAEM 160
Query: 439 IRMLPSYYQHVCQ-YKNTLVTKFFGVHCVKPVGGQKTRFIVMGNLFCSEYRIHRRFDLKG 497
+L Y+Q + + + NTL+ +F G++ + V G +T +V N+F +HR++DLKG
Sbjct: 161 HNILKKYHQFIVECHGNTLLPQFLGMYRLT-VDGVETYMVVTRNVFSHRLTVHRKYDLKG 219
Query: 498 SSYGR 502
S+ R
Sbjct: 220 STVAR 224
>pdb|2YBX|A Chain A, Crystal Structure Of Human
Phosphatidylinositol-5-Phosphate 4-Kinase Type-2 Alpha
pdb|2YBX|B Chain B, Crystal Structure Of Human
Phosphatidylinositol-5-Phosphate 4-Kinase Type-2 Alpha
Length = 394
Score = 96.3 bits (238), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 102/189 (53%), Gaps = 9/189 (4%)
Query: 317 LMLNLQLGIRHSVGK--HASVMRELRQSDFEPKEKFWTRFPPEGSKFTPPHQSMDFRWKD 374
L+ L G+ HS+ + H + L DF K +++ + F + F++K+
Sbjct: 26 LLSVLMWGVNHSINELSHVQIPVMLMPDDF----KAYSKIKVDNHLFNKENMPSHFKFKE 81
Query: 375 YCPMVFRHLRELFAIDPADYMLAICGDDALRELSSPGKSGSFFYLTQDDRFMIKTVKKSE 434
YCPMVFR+LRE F ID D+ ++ L S +SG+ F+ + D R++IKT+ +
Sbjct: 82 YCPMVFRNLRERFGIDDQDFQNSLTRSAPLPN-DSQARSGARFHTSYDKRYIIKTITSED 140
Query: 435 VKVLIRMLPSYYQHVCQ-YKNTLVTKFFGVHCVKPVGGQKTRFIVMGNLFCSEYRIHRRF 493
V + +L Y+Q++ + + TL+ +F G++ + V G + IV N+F ++R++
Sbjct: 141 VAEMHNILKKYHQYIVECHGITLLPQFLGMYRLN-VDGVEIYVIVTRNVFSHRLSVYRKY 199
Query: 494 DLKGSSYGR 502
DLKGS+ R
Sbjct: 200 DLKGSTVAR 208
>pdb|2GK9|A Chain A, Human Phosphatidylinositol-4-Phosphate 5-Kinase, Type Ii,
Gamma
pdb|2GK9|B Chain B, Human Phosphatidylinositol-4-Phosphate 5-Kinase, Type Ii,
Gamma
pdb|2GK9|C Chain C, Human Phosphatidylinositol-4-Phosphate 5-Kinase, Type Ii,
Gamma
pdb|2GK9|D Chain D, Human Phosphatidylinositol-4-Phosphate 5-Kinase, Type Ii,
Gamma
Length = 392
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 94/182 (51%), Gaps = 12/182 (6%)
Query: 324 GIRHSVGKHASVM--RELRQSDFEPKEKFWTRFPPEGSKFTPPHQSMDFRWKDYCPMVFR 381
G+ HS+ + + V L DF+ K + P H F++K+YCP VFR
Sbjct: 25 GVAHSINELSQVPPPVMLLPDDFKASSKIKVNNHLFHRENLPSH----FKFKEYCPQVFR 80
Query: 382 HLRELFAIDPADYMLAICGDDALRELSSPGKSGSFFYLTQDDRFMIKTVKKSEVKVLIRM 441
+LR+ F ID DY++++ + S G+ F ++ D +IK V ++ +
Sbjct: 81 NLRDRFGIDDQDYLVSLTRNPPSESEGSDGR----FLISYDRTLVIKEVSSEDIADMHSN 136
Query: 442 LPSYYQHVCQ-YKNTLVTKFFGVHCVKPVGGQKTRFIVMGNLFCSEYRIHRRFDLKGSSY 500
L +Y+Q++ + + NTL+ +F G++ V V + + +VM N+F +HR++DLKGS
Sbjct: 137 LSNYHQYIVKCHGNTLLPQFLGMYRVS-VDNEDSYMLVMRNMFSHRLPVHRKYDLKGSLV 195
Query: 501 GR 502
R
Sbjct: 196 SR 197
>pdb|3ILS|A Chain A, The Thioesterase Domain From Pksa
Length = 265
Score = 32.3 bits (72), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 22/45 (48%)
Query: 284 NGIGQFQKSPCSSADGEVKKPGHTISKGHKNYDLMLNLQLGIRHS 328
N IG F P +S DG + P + I D+ML+ +L H+
Sbjct: 139 NSIGLFATQPGASPDGSTEPPSYLIPHFTAVVDVMLDYKLAPLHA 183
>pdb|1RKT|A Chain A, Crystal Structure Of Yfir, A Putative Transcriptional
Regulator From Bacillus Subtilis
pdb|1RKT|B Chain B, Crystal Structure Of Yfir, A Putative Transcriptional
Regulator From Bacillus Subtilis
Length = 205
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 26/59 (44%)
Query: 88 RKGRASGKGKFSWPSGATYEGGFKSGRMDGEGTFVGVEGDTYRGSWSNDRKHGYGEKRY 146
RK S + + W S ++Y G D T V+ + +W N+ + Y EKRY
Sbjct: 73 RKLDKSAEHQSVWASISSYLDELTEGLRDVADTLAPVQFEYLVTAWRNEERRQYLEKRY 131
>pdb|2R3S|A Chain A, Crystal Structure Of A Putative O-methyltransferase
(npun_r0239) From Nostoc Punctiforme Pcc 73102 At 2.15 A
Resolution
pdb|2R3S|B Chain B, Crystal Structure Of A Putative O-methyltransferase
(npun_r0239) From Nostoc Punctiforme Pcc 73102 At 2.15 A
Resolution
Length = 335
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 33 PNSRRVTPTRDTGGGVVVEKILPNGDLYTGA 63
PNS R+TP +V PNGD YT A
Sbjct: 274 PNSDRITPPDAAAFSLVXLATTPNGDAYTFA 304
>pdb|1H3I|A Chain A, Crystal Structure Of The Histone Methyltransferase Set79
pdb|1H3I|B Chain B, Crystal Structure Of The Histone Methyltransferase Set79
Length = 293
Score = 28.5 bits (62), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Query: 125 EGDTYRGSWSNDRKHGYGEKRYANGDVYRGSWRFNLMDGYGKYAWSDGN-VYEGEWKNGV 183
+G T G + +D G G Y +G V +G++ ++G + +DG +++G++K+ +
Sbjct: 4 DGSTLEGYYVDDALQGQGVYTYEDGGVLQGTYVDGELNGPAQEYDTDGRLIFKGQYKDNI 63
Query: 184 IFGKGTLSWNNGNRYEG 200
G + + +G G
Sbjct: 64 RHGVCWIYYPDGGSLVG 80
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.138 0.445
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,551,061
Number of Sequences: 62578
Number of extensions: 931524
Number of successful extensions: 1729
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1703
Number of HSP's gapped (non-prelim): 27
length of query: 538
length of database: 14,973,337
effective HSP length: 103
effective length of query: 435
effective length of database: 8,527,803
effective search space: 3709594305
effective search space used: 3709594305
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)