Query 009289
Match_columns 538
No_of_seqs 48 out of 50
Neff 2.9
Searched_HMMs 29240
Date Mon Mar 25 23:08:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009289.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009289hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2nxx_A Ultraspiracle (USP, NR2 91.9 0.84 2.9E-05 42.0 9.7 72 417-489 83-154 (235)
2 2iz2_A FTZ-F1 alpha, nuclear h 91.5 1.4 5E-05 41.0 10.9 73 417-490 92-165 (243)
3 3k6p_A Steroid hormone recepto 89.8 0.84 2.9E-05 42.8 7.7 75 415-491 92-166 (248)
4 3ltx_A Estrogen receptor; cons 89.3 0.89 3E-05 42.4 7.4 75 416-491 81-155 (243)
5 1pzl_A Hepatocyte nuclear fact 89.1 2.6 8.7E-05 38.3 10.2 76 414-491 84-160 (237)
6 3oll_A Estrogen receptor beta; 89.1 1.4 4.9E-05 40.6 8.6 72 417-490 79-151 (240)
7 2p1t_A Retinoic acid receptor 88.7 1.3 4.4E-05 40.7 8.0 71 418-489 88-158 (240)
8 1lbd_A RXR_LBD, retinoid X rec 86.4 1.6 5.5E-05 41.3 7.4 73 417-490 129-201 (282)
9 2e2r_A Estrogen-related recept 86.3 1.7 5.8E-05 40.5 7.4 72 417-490 94-165 (244)
10 1g2n_A Ultraspiracle protein; 85.3 1.9 6.6E-05 40.5 7.3 74 416-489 87-177 (264)
11 1yye_A ER-beta, estrogen recep 84.4 4.7 0.00016 38.3 9.5 74 416-491 76-150 (268)
12 3mnp_A Glucocorticoid receptor 83.6 2.7 9.3E-05 39.9 7.5 70 417-487 88-158 (261)
13 1ymt_A Steroidogenic factor 1; 82.6 3.6 0.00012 38.2 7.8 76 416-491 90-168 (246)
14 3tx7_B Nuclear receptor subfam 82.3 2.9 9.8E-05 42.1 7.4 74 418-491 198-274 (352)
15 1fcy_A RAR-gamma-1, retinoic a 81.8 2.8 9.7E-05 38.6 6.7 65 423-489 96-160 (236)
16 3kmr_A Retinoic acid receptor 80.9 3.5 0.00012 39.2 7.2 61 429-490 125-185 (266)
17 1l2j_A Estrogen receptor beta; 79.4 3.4 0.00012 39.3 6.6 74 416-491 104-178 (271)
18 3ipq_A Oxysterols receptor LXR 79.2 4.1 0.00014 38.9 7.1 64 427-490 143-206 (283)
19 3plz_A FTZ-F1 related protein; 78.5 5.2 0.00018 37.8 7.5 75 416-490 101-178 (257)
20 1sqn_A PR, progesterone recept 77.9 8.3 0.00028 36.4 8.7 70 417-487 87-157 (261)
21 3ilz_A Thyroid hormone recepto 76.9 5.4 0.00018 37.8 7.1 61 429-490 127-187 (267)
22 3n00_A REV-ERBA-alpha; reverba 76.7 8.2 0.00028 36.3 8.2 63 428-491 121-183 (245)
23 1xdk_B RAR-beta, retinoic acid 76.3 4.5 0.00015 39.1 6.5 71 418-490 118-188 (303)
24 2ocf_A Estrogen receptor; estr 76.2 6.8 0.00023 38.1 7.8 72 416-489 89-161 (298)
25 3cqv_A Nuclear receptor subfam 76.0 4.4 0.00015 36.4 6.0 63 427-490 75-137 (199)
26 3dzy_A Retinoic acid receptor 75.1 6.3 0.00022 40.9 7.6 65 428-493 324-389 (467)
27 1t7r_A Androgen receptor; nucl 74.7 5.6 0.00019 37.7 6.6 69 418-487 96-165 (269)
28 2r40_D Ecdysone receptor, 20-h 74.6 4.9 0.00017 38.0 6.2 58 428-486 124-181 (266)
29 1xpc_A Estrogen receptor; nucl 73.4 7.1 0.00024 36.2 6.8 72 416-489 80-152 (248)
30 3cjw_A COUP transcription fact 72.4 17 0.00057 33.6 9.0 71 417-490 83-156 (244)
31 1nq7_A Nuclear receptor ROR-be 72.0 17 0.00057 33.8 9.0 60 428-489 106-165 (244)
32 1ovl_A Orphan nuclear receptor 70.6 15 0.00052 34.5 8.4 67 417-486 120-186 (271)
33 2nxx_E Ecdysone receptor (ECR, 70.1 8.6 0.00029 35.8 6.6 58 428-486 108-165 (248)
34 3vhv_A Mineralocorticoid recep 68.6 11 0.00038 35.6 7.1 69 418-487 87-156 (260)
35 3vhu_A Mineralocorticoid recep 65.3 9.8 0.00034 37.0 6.1 69 418-487 121-190 (294)
36 1pdu_A DHR38, nuclear hormone 63.8 16 0.00054 34.3 7.1 66 418-486 94-159 (244)
37 1z5x_E Ecdysone receptor ligan 59.2 16 0.00054 35.8 6.4 57 429-486 173-229 (310)
38 3f5c_B Nuclear receptor subfam 55.3 25 0.00086 33.6 7.0 37 455-491 155-191 (268)
39 3u9q_A Peroxisome proliferator 55.1 34 0.0012 32.6 7.8 62 428-490 127-191 (269)
40 1hg4_A Ultraspiracle; nuclear 52.5 29 0.00099 32.6 6.8 30 461-490 163-192 (279)
41 2o4j_A Vitamin D3 receptor; nu 51.7 26 0.00089 33.7 6.4 61 429-489 116-177 (292)
42 3b0t_A Vitamin D3 receptor; nu 51.2 31 0.0011 32.0 6.7 35 455-489 140-174 (254)
43 3v3e_B Nuclear receptor subfam 49.1 27 0.00091 33.1 6.0 57 428-486 108-164 (257)
44 1xvp_B Orphan nuclear receptor 47.8 43 0.0015 30.8 7.0 36 455-490 136-171 (246)
45 3l0l_A Nuclear receptor ROR-ga 45.4 54 0.0019 30.6 7.4 36 455-490 137-172 (248)
46 3vi8_A Peroxisome proliferator 44.2 81 0.0028 30.1 8.6 64 428-491 130-195 (273)
47 3p0u_A Nuclear receptor subfam 43.2 1.1E+02 0.0036 28.5 9.0 73 418-491 81-160 (249)
48 1n83_A Nuclear receptor ROR-al 42.6 81 0.0028 29.9 8.2 35 455-489 146-180 (270)
49 2hc4_A Vitamin D receptor; alp 40.3 59 0.002 31.5 7.0 36 455-490 186-221 (302)
50 1osh_A BIle acid receptor; nuc 40.0 68 0.0023 29.2 7.0 35 455-489 121-155 (232)
51 2kz2_A Calmodulin, CAM; TR2C, 38.7 88 0.003 24.3 6.6 61 360-434 22-82 (94)
52 3dzy_D Peroxisome proliferator 38.6 72 0.0025 32.4 7.6 62 428-490 276-340 (419)
53 1nrl_A Orphan nuclear receptor 35.6 1.8E+02 0.0063 28.5 9.7 35 455-489 201-235 (316)
54 2oqj_C Peptide 2G12.1 (ACPPSHV 35.3 8.7 0.0003 26.1 0.2 14 296-309 5-18 (26)
55 3arc_I Photosystem II reaction 22.1 49 0.0017 24.6 2.2 16 15-30 10-25 (38)
56 3vii_A Beta-glucosidase; cellu 21.6 65 0.0022 34.0 3.9 53 429-481 227-308 (487)
57 1srz_A Gamma-aminobutyric acid 21.3 42 0.0014 25.3 1.8 20 126-146 49-68 (68)
58 2pmy_A RAS and EF-hand domain- 20.0 1.4E+02 0.0048 22.7 4.6 53 366-434 26-78 (91)
No 1
>2nxx_A Ultraspiracle (USP, NR2B4); hormone receptor, APO and holo ligand binding pocket, hormone/growth factor complex; HET: P1A; 2.75A {Tribolium castaneum}
Probab=91.92 E-value=0.84 Score=42.03 Aligned_cols=72 Identities=11% Similarity=0.201 Sum_probs=53.0
Q ss_pred HHHHHHHHhhhcCCCceeecCCceecccCCCCccchhhhchhHHHHHHHHHhccCChhHHhHHHHhhhcCCCc
Q 009289 417 SFLQTLLYSIKAGSGGLLLPDSVEITHLNRPNNKLLDWFFNPIMVLKEQISVLKLTEPEVRYLEKVVLFGSTT 489 (538)
Q Consensus 417 slL~~LL~SaKanS~GlllsD~~EiT~~NrPkdr~fDWff~PllviKEQIk~~~L~E~EE~yL~KlvL~~~d~ 489 (538)
.+|..--+|.+. ++++++.||..++...-....+-+++-..+.-+-.+++.++++++|=.||+-++|++.|.
T Consensus 83 ~~L~~a~rs~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ld~~E~~lLkaivL~~pd~ 154 (235)
T 2nxx_A 83 LIAAFSHRSMQA-QDAIVLATGLTVNKSTAHAVGVGNIYDRVLSELVNKMKEMKMDKTELGCLRAIILYNPDV 154 (235)
T ss_dssp HHHHHHHTTSSS-SSSEECSSSCEECSSSCSSSSCSSSHHHHHHHTHHHHHHHTCCHHHHHHHHHHHHCCTTS
T ss_pred HHHHHHHhcccC-CCceEecCCcccccchhhhhchHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 444444567766 688999999988765543344445544444457789999999999999999999998764
No 2
>2iz2_A FTZ-F1 alpha, nuclear hormone receptor FTZ-F1; nuclear protein, phosphorylation, PAIR-RULE protein; 2.8A {Drosophila melanogaster} PDB: 2xhs_A
Probab=91.45 E-value=1.4 Score=41.05 Aligned_cols=73 Identities=12% Similarity=0.116 Sum_probs=51.8
Q ss_pred HHHHHHHHhhhcC-CCceeecCCceecccCCCCccchhhhchhHHHHHHHHHhccCChhHHhHHHHhhhcCCCcc
Q 009289 417 SFLQTLLYSIKAG-SGGLLLPDSVEITHLNRPNNKLLDWFFNPIMVLKEQISVLKLTEPEVRYLEKVVLFGSTTE 490 (538)
Q Consensus 417 slL~~LL~SaKan-S~GlllsD~~EiT~~NrPkdr~fDWff~PllviKEQIk~~~L~E~EE~yL~KlvL~~~d~~ 490 (538)
.+|..--+|.+.+ ++++++.||..++..+-....+-+ +.+.+.-+-..++.++++++|=.||+-++|++.|..
T Consensus 92 ~~L~~a~rs~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~L~ld~~E~~lLkAivL~npd~~ 165 (243)
T 2iz2_A 92 LVLDHLHHRIHNGLPDETQLNNGQVFNLMSLGLLGVPQ-LGDYFNELQNKLQDLKFDMGDYVCMKFLILLNPSVR 165 (243)
T ss_dssp HHHHHHHHHHHSCCCSCCBCSSSCBCCCCTTTTSSTTS-SHHHHHHHHHHHHHTTCCHHHHHHHHHHHHCCTTST
T ss_pred HHHHHHHHhhhcCCCCceeecCCcccChhhHhhcchHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCC
Confidence 3444445677654 678899999876554322222223 346677777899999999999999999999987643
No 3
>3k6p_A Steroid hormone receptor ERR1; estrogen related receptor alpha, DNA-binding, isopeptide BON binding, nucleus, phosphoprotein, transcription; HET: 5FB; 2.00A {Homo sapiens} SCOP: a.123.1.1 PDB: 1xb7_A 2pjl_A* 3d24_A
Probab=89.76 E-value=0.84 Score=42.79 Aligned_cols=75 Identities=15% Similarity=0.146 Sum_probs=54.4
Q ss_pred hHHHHHHHHHhhhcCCCceeecCCceecccCCCCccchhhhchhHHHHHHHHHhccCChhHHhHHHHhhhcCCCccc
Q 009289 415 CYSFLQTLLYSIKAGSGGLLLPDSVEITHLNRPNNKLLDWFFNPIMVLKEQISVLKLTEPEVRYLEKVVLFGSTTER 491 (538)
Q Consensus 415 AyslL~~LL~SaKanS~GlllsD~~EiT~~NrPkdr~fDWff~PllviKEQIk~~~L~E~EE~yL~KlvL~~~d~~r 491 (538)
...+|..--+|.+.+ +++++.||..++...-....+.| +++++.-+-.++++++++++|=.||+-++|++.|...
T Consensus 92 el~lL~~a~~s~~~~-~~l~~~~g~~~~~~~~~~~~~~~-~~~~l~~~~~~l~~L~ld~~E~~lLkAivL~npd~~g 166 (248)
T 3k6p_A 92 EVLVLGVAQRSLPLQ-DELAFAEDLVLDEEGARAAGLGE-LGAALLQLVRRLQALRLEREEYVLLKALALANSDSVH 166 (248)
T ss_dssp HHHHHHHHHHHTTSS-SCEEEETTEEECHHHHHHTTTTT-HHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTCCCTT
T ss_pred HHHHHHHHHHccCCC-CeEEeCCCcccChhhhhhccHHH-HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC
Confidence 345566666777777 89999999877642111112334 3577777888999999999999999999999877543
No 4
>3ltx_A Estrogen receptor; constitutive, nuclear receptor, DNA-binding, metal-binding, nucleus, transcription, transcription regulation, zinc-finger; 2.60A {Crassostrea gigas}
Probab=89.30 E-value=0.89 Score=42.39 Aligned_cols=75 Identities=19% Similarity=0.314 Sum_probs=53.5
Q ss_pred HHHHHHHHHhhhcCCCceeecCCceecccCCCCccchhhhchhHHHHHHHHHhccCChhHHhHHHHhhhcCCCccc
Q 009289 416 YSFLQTLLYSIKAGSGGLLLPDSVEITHLNRPNNKLLDWFFNPIMVLKEQISVLKLTEPEVRYLEKVVLFGSTTER 491 (538)
Q Consensus 416 yslL~~LL~SaKanS~GlllsD~~EiT~~NrPkdr~fDWff~PllviKEQIk~~~L~E~EE~yL~KlvL~~~d~~r 491 (538)
..+|..--+|...+.+.++..||..++........+-+ +++++.-+-++++.++++++|=.||+-++|++.|...
T Consensus 81 l~~L~~a~~s~~~~~~~l~~~~g~~~~~~~~~~~~~~~-~~~~i~~~~~~l~~L~ld~~E~~lLkaivL~~pd~~g 155 (243)
T 3ltx_A 81 LLLLNCAFRSIEHGGKSLAFAPDLVLDRSSWSTVEMTE-IFEQVAAVSEQMMQNHLHKDELLLLQAMVLVNAEVRR 155 (243)
T ss_dssp HHHHHHHHHTTTTTTSEEEEETTEEEEHHHHHHTTCHH-HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCCSC
T ss_pred HHHHHHHHHhccCCCCeEEecCCcccchhhhcccCHHH-HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC
Confidence 44555556777777777999999877643211112223 3466667778999999999999999999999987543
No 5
>1pzl_A Hepatocyte nuclear factor 4-alpha; transcription; HET: MYR; 2.10A {Homo sapiens} SCOP: a.123.1.1 PDB: 3fs1_A* 1m7w_A* 1lv2_A*
Probab=89.13 E-value=2.6 Score=38.28 Aligned_cols=76 Identities=17% Similarity=0.180 Sum_probs=55.9
Q ss_pred chHHHHHHHHHhhhcCCCceeecCCceecccCCCCccchhhhchhHH-HHHHHHHhccCChhHHhHHHHhhhcCCCccc
Q 009289 414 PCYSFLQTLLYSIKAGSGGLLLPDSVEITHLNRPNNKLLDWFFNPIM-VLKEQISVLKLTEPEVRYLEKVVLFGSTTER 491 (538)
Q Consensus 414 PAyslL~~LL~SaKanS~GlllsD~~EiT~~NrPkdr~fDWff~Pll-viKEQIk~~~L~E~EE~yL~KlvL~~~d~~r 491 (538)
..+.+|..--+|.+ +++.++++||..+.. |.++..-+.-++++++ -+-+.++.+++|++|=.||+-+++++.|...
T Consensus 84 ~~~~~L~~a~~s~~-~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~l~~~l~~L~ld~~E~~~L~ai~l~~~~~~~ 160 (237)
T 1pzl_A 84 GEHLLLGATKRSMV-FKDVLLLGNDYIVPR-HCPELAEMSRVSIRILDELVLPFQELQIDDNEYAYLKAIIFFDPDAKG 160 (237)
T ss_dssp HHHHHHHHHHHHTT-SSSEEECTTSCEEES-SCGGGGGGHHHHHHHHHHTHHHHHHHTCCHHHHHHHHHHHHCCTTCTT
T ss_pred HHHHHHHHHHHhhc-cCCceeecCCcccCc-cchhhhhhHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHhCCCCCC
Confidence 35677777778876 678899999988754 3344322233456654 5668999999999999999999999876543
No 6
>3oll_A Estrogen receptor beta; steroid binding, phosphorylation, hormone receptor-activator; HET: PTR EST; 1.50A {Homo sapiens} SCOP: a.123.1.1 PDB: 1u3s_A* 1u3q_A* 1x78_A* 1x7b_A* 1x7j_A* 1x76_A* 2yjd_A* 3ols_A* 3omo_A* 3omp_A* 3omq_A* 1u3r_A* 1u9e_A* 1qkm_A* 2giu_A* 1nde_A* 2jj3_A* 2i0g_A* 2qtu_A* 2z4b_A* ...
Probab=89.11 E-value=1.4 Score=40.62 Aligned_cols=72 Identities=17% Similarity=0.278 Sum_probs=52.2
Q ss_pred HHHHHHHHhhhcCCCceeecCCceecccCCC-CccchhhhchhHHHHHHHHHhccCChhHHhHHHHhhhcCCCcc
Q 009289 417 SFLQTLLYSIKAGSGGLLLPDSVEITHLNRP-NNKLLDWFFNPIMVLKEQISVLKLTEPEVRYLEKVVLFGSTTE 490 (538)
Q Consensus 417 slL~~LL~SaKanS~GlllsD~~EiT~~NrP-kdr~fDWff~PllviKEQIk~~~L~E~EE~yL~KlvL~~~d~~ 490 (538)
.+|..--+|.+.+ +.+++.||..++....- ...+-++ ++++.-+-.+++.++++++|=.||+-++|++.|..
T Consensus 79 ~~L~~a~~s~~~~-~~l~~~~g~~~~~~~~~~~~~~~~~-~~~l~~~~~~l~~L~ld~~E~~lLkAivL~~pd~~ 151 (240)
T 3oll_A 79 LMMGLMWRSIDHP-GKLIFAPDLVLDRDEGKCVEGILEI-FDMLLATTSRFRELKLQHKEYLCVKAMILLNSSMY 151 (240)
T ss_dssp HHHHHHHHHTTST-TEEEEETBEEEEGGGGGGSTTHHHH-HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHCSCCC
T ss_pred HHHHHHHHccCCC-CeeEecCCcccchhhHHHHhhHHHH-HHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCC
Confidence 4444445666644 78999999887654321 2233443 46777788899999999999999999999998754
No 7
>2p1t_A Retinoic acid receptor RXR-alpha; protein-ligand complex, hormone receptor; HET: 3TN; 1.80A {Homo sapiens} SCOP: a.123.1.1 PDB: 1mvc_A* 1mzn_A* 1mv9_A* 2p1u_A* 2p1v_A* 2zxz_A* 2zy0_A* 3fug_A* 3nsp_A 3nsq_A* 3r29_A 3r2a_A* 3r5m_A* 3e94_A* 3kwy_A* 1fby_A* 3uvv_B* 3fc6_A* 1rdt_A* 3fal_A* ...
Probab=88.67 E-value=1.3 Score=40.71 Aligned_cols=71 Identities=17% Similarity=0.253 Sum_probs=48.4
Q ss_pred HHHHHHHhhhcCCCceeecCCceecccCCCCccchhhhchhHHHHHHHHHhccCChhHHhHHHHhhhcCCCc
Q 009289 418 FLQTLLYSIKAGSGGLLLPDSVEITHLNRPNNKLLDWFFNPIMVLKEQISVLKLTEPEVRYLEKVVLFGSTT 489 (538)
Q Consensus 418 lL~~LL~SaKanS~GlllsD~~EiT~~NrPkdr~fDWff~PllviKEQIk~~~L~E~EE~yL~KlvL~~~d~ 489 (538)
++..--||.+. ++++++.||..++..+-..+.+-+.+-..+.-+-+.++.+++|++|=.||+-+++++.|.
T Consensus 88 il~~a~rs~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ld~~E~~~Lkai~l~~pd~ 158 (240)
T 2p1t_A 88 IASFSHRSIAV-KDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDS 158 (240)
T ss_dssp HHHHHHHTTTS-SSEEECTTSCEEEHHHHHTTTCHHHHHHHHHHTHHHHHHTTCCHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHhhccC-CCceEecCCcccccchhhhhchHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCCC
Confidence 34433455554 578999999877654322233333433344456678999999999999999999998764
No 8
>1lbd_A RXR_LBD, retinoid X receptor; transcription factor, nuclear receptor, structural proteomic europe, spine, structural genomics; 2.70A {Homo sapiens} SCOP: a.123.1.1 PDB: 1z5x_U* 2q60_A
Probab=86.39 E-value=1.6 Score=41.33 Aligned_cols=73 Identities=16% Similarity=0.242 Sum_probs=49.5
Q ss_pred HHHHHHHHhhhcCCCceeecCCceecccCCCCccchhhhchhHHHHHHHHHhccCChhHHhHHHHhhhcCCCcc
Q 009289 417 SFLQTLLYSIKAGSGGLLLPDSVEITHLNRPNNKLLDWFFNPIMVLKEQISVLKLTEPEVRYLEKVVLFGSTTE 490 (538)
Q Consensus 417 slL~~LL~SaKanS~GlllsD~~EiT~~NrPkdr~fDWff~PllviKEQIk~~~L~E~EE~yL~KlvL~~~d~~ 490 (538)
.+|..--+|.+. ++++++.||..++...-....+-+.|-..+.-+-..++.++++++|=.||+-++|++.|..
T Consensus 129 ~il~~a~rs~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ld~~E~~lLkaivL~~pd~~ 201 (282)
T 1lbd_A 129 LIASFSHRSIAV-KDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSK 201 (282)
T ss_dssp HHHHHHHGGGGS-SSEEECTTSCEEEHHHHHHTTTHHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHSCTTCT
T ss_pred HHHHHHHhcccC-CCceEecCCcccccchhhhcccHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHcCCCCC
Confidence 344444466664 5789999998766432212223334434444567889999999999999999999987753
No 9
>2e2r_A Estrogen-related receptor gamma; ERR gamma, BPA, nuclear receptor, transcription; HET: 2OH; 1.60A {Homo sapiens} SCOP: a.123.1.1 PDB: 2zas_A* 2zbs_A 2zkc_A* 2p7g_A* 1vjb_A* 1tfc_A 2p7a_A* 2p7z_A* 2gpu_A* 1kv6_A 2gp7_A 2gpp_A* 2gpo_A* 2gpv_A* 1s9q_A* 1s9p_A* 2ewp_A*
Probab=86.27 E-value=1.7 Score=40.49 Aligned_cols=72 Identities=22% Similarity=0.246 Sum_probs=50.3
Q ss_pred HHHHHHHHhhhcCCCceeecCCceecccCCCCccchhhhchhHHHHHHHHHhccCChhHHhHHHHhhhcCCCcc
Q 009289 417 SFLQTLLYSIKAGSGGLLLPDSVEITHLNRPNNKLLDWFFNPIMVLKEQISVLKLTEPEVRYLEKVVLFGSTTE 490 (538)
Q Consensus 417 slL~~LL~SaKanS~GlllsD~~EiT~~NrPkdr~fDWff~PllviKEQIk~~~L~E~EE~yL~KlvL~~~d~~ 490 (538)
.+|..--+|... ++++++.+|..++....-...+.+ +++.+.-+-++++.++++++|=.||+-++|++.|..
T Consensus 94 ~~L~~a~rs~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~l~~L~ld~~E~~lLkAivL~~pd~~ 165 (244)
T 2e2r_A 94 LILGVVYRSLSF-EDELVYADDYIMDEDQSKLAGLLD-LNNAILQLVKKYKSMKLEKEEFVTLKAIALANSDSM 165 (244)
T ss_dssp HHHHHHHHTTTS-SSCEEEETTEEECHHHHHHTTCHH-HHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHTCCCT
T ss_pred HHHHHHHHhccc-CCeEEecCCEeecHHHhhhccHHH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCC
Confidence 344444466665 567889998765432111122333 457788888999999999999999999999987643
No 10
>1g2n_A Ultraspiracle protein; antiparallel alpha-helical sandwich, structural proteomics in europe, spine, structural genomics, gene regulation; HET: EPH; 1.65A {Heliothis virescens} SCOP: a.123.1.1 PDB: 2r40_A* 1r20_A* 1r1k_A* 3ixp_A*
Probab=85.30 E-value=1.9 Score=40.51 Aligned_cols=74 Identities=12% Similarity=0.168 Sum_probs=50.1
Q ss_pred HHHHHHHHHhhhc---CCCc--------------eeecCCceecccCCCCccchhhhchhHHHHHHHHHhccCChhHHhH
Q 009289 416 YSFLQTLLYSIKA---GSGG--------------LLLPDSVEITHLNRPNNKLLDWFFNPIMVLKEQISVLKLTEPEVRY 478 (538)
Q Consensus 416 yslL~~LL~SaKa---nS~G--------------lllsD~~EiT~~NrPkdr~fDWff~PllviKEQIk~~~L~E~EE~y 478 (538)
..+|..--+|.+. +.++ +++.||..++...--+..+-+++-+.+.-+-.+++.++++++|=.|
T Consensus 87 l~lL~~a~~s~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ld~~E~~l 166 (264)
T 1g2n_A 87 LLLFAIAWRSMEFLTEERDGVDGTGNRTTSPPQLMCLMPGMTLHRNSALQAGVGQIFDRVLSELSLKMRTLRVDQAEYVA 166 (264)
T ss_dssp HHHHHHHHHHGGGSCCC----------CCCCCCEEEEETTEEEEHHHHHHHTCHHHHHHHHHHTHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHccccccccccccccccccccccccceeecCCcccCchhhhhccHHHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 4455555566665 3455 8999998766432111233444446677778899999999999999
Q ss_pred HHHhhhcCCCc
Q 009289 479 LEKVVLFGSTT 489 (538)
Q Consensus 479 L~KlvL~~~d~ 489 (538)
|+-++|++.|.
T Consensus 167 LkAivL~npd~ 177 (264)
T 1g2n_A 167 LKAIILLNPDV 177 (264)
T ss_dssp HHHHHHSCTTC
T ss_pred HHHHHHhCCCC
Confidence 99999998774
No 11
>1yye_A ER-beta, estrogen receptor beta; ER-beta, nuclear receptor, transcription factor, agonist; HET: 196; 2.03A {Homo sapiens} SCOP: a.123.1.1 PDB: 1yy4_A*
Probab=84.45 E-value=4.7 Score=38.32 Aligned_cols=74 Identities=16% Similarity=0.274 Sum_probs=50.9
Q ss_pred HHHHHHHHHhhhcCCCceeecCCceecccCCC-CccchhhhchhHHHHHHHHHhccCChhHHhHHHHhhhcCCCccc
Q 009289 416 YSFLQTLLYSIKAGSGGLLLPDSVEITHLNRP-NNKLLDWFFNPIMVLKEQISVLKLTEPEVRYLEKVVLFGSTTER 491 (538)
Q Consensus 416 yslL~~LL~SaKanS~GlllsD~~EiT~~NrP-kdr~fDWff~PllviKEQIk~~~L~E~EE~yL~KlvL~~~d~~r 491 (538)
..+|..--+|.+.+ +.+++.+|..++...-. ...+-+ +++.+.-+-.+++.++++++|=.||+-++|++.|...
T Consensus 76 l~lL~~a~rs~~~~-~~l~~~~g~~~~~~~~~~~~~~~~-~~~~l~~~~~~l~~L~ld~~E~~lLkAIvLfnpd~~g 150 (268)
T 1yye_A 76 VLMMGLMWRSIDHP-GKLIFAPDLVLDRDEGKCVEGILE-IFDMLLATTSRFRELKLQHKEYLCVKAMILLNSSMYP 150 (268)
T ss_dssp HHHHHHHHHHTTST-TEEEEETTEEEEGGGGGGSTTHHH-HHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHTCCC--
T ss_pred HHHHHHHHHhccCC-CceEecCCcccChhhHhhhccHHH-HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCC
Confidence 34444445667654 77888999766543211 122334 3467777788999999999999999999999877544
No 12
>3mnp_A Glucocorticoid receptor; protein-ligand complex, steroid nuclear receptor, mouse GR, hormone receptor; HET: DEX; 1.50A {Mus musculus} SCOP: a.123.1.1 PDB: 3mno_A* 3mne_A* 1m2z_A* 3k22_A* 3cld_A* 3k23_A* 3e7c_A* 1nhz_A* 1p93_A* 3bqd_A* 3h52_A* 3gn8_A* 4e2j_A*
Probab=83.56 E-value=2.7 Score=39.88 Aligned_cols=70 Identities=14% Similarity=0.176 Sum_probs=49.6
Q ss_pred HHHHHHHHhhhcCCC-ceeecCCceecccCCCCccchhhhchhHHHHHHHHHhccCChhHHhHHHHhhhcCC
Q 009289 417 SFLQTLLYSIKAGSG-GLLLPDSVEITHLNRPNNKLLDWFFNPIMVLKEQISVLKLTEPEVRYLEKVVLFGS 487 (538)
Q Consensus 417 slL~~LL~SaKanS~-GlllsD~~EiT~~NrPkdr~fDWff~PllviKEQIk~~~L~E~EE~yL~KlvL~~~ 487 (538)
.+|..--||.+.+.+ -++..||..++...-....+.|+ ++++.-+-..+++++++++|=.||+-+++++.
T Consensus 88 ~iL~~a~rs~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~-~~~l~~~~~~l~~L~ld~~E~~lLkAIvL~np 158 (261)
T 3mnp_A 88 MVFALGWRSYRQASGNLLCFAPDLIINEQRMTLPCMYDQ-CKHMLFISTELQRLQVSYEEYLCMKTLLLLSS 158 (261)
T ss_dssp HHHHHHHHHHHHHTTSSEEEETTEEECHHHHTSTTTHHH-HHHHHHHHHHHHHHTCCHHHHHHHHHHHHTSE
T ss_pred HHHHHHHHcccCCCCCEEEecCCcccchhhhhhhhHHHH-HHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCC
Confidence 444444567666544 37788887665432222334553 56777788899999999999999999999987
No 13
>1ymt_A Steroidogenic factor 1; SF-1, ligand-binding domain, ligand, phosphatidyl glycerol, CO-repressor peptide, transcription; HET: DR9; 1.20A {Mus musculus} PDB: 3f7d_A* 1yp0_A* 1yow_A* 1zdt_A*
Probab=82.62 E-value=3.6 Score=38.20 Aligned_cols=76 Identities=18% Similarity=0.198 Sum_probs=52.6
Q ss_pred HHHHHHHHHhhhc-CCCceeecCCceecccCCC--CccchhhhchhHHHHHHHHHhccCChhHHhHHHHhhhcCCCccc
Q 009289 416 YSFLQTLLYSIKA-GSGGLLLPDSVEITHLNRP--NNKLLDWFFNPIMVLKEQISVLKLTEPEVRYLEKVVLFGSTTER 491 (538)
Q Consensus 416 yslL~~LL~SaKa-nS~GlllsD~~EiT~~NrP--kdr~fDWff~PllviKEQIk~~~L~E~EE~yL~KlvL~~~d~~r 491 (538)
..+|..--+|.+. +++.+++.||..++...-. .+.-++=+.+++.-+-..++.++++++|=.||+-++|++.|...
T Consensus 90 l~~L~~a~rs~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ld~~E~~lLkAivL~~pd~~g 168 (246)
T 1ymt_A 90 LLVLDHIYRQVQYGKEDSILLVTGQEVELSTVAVQAGSLLHSLVLRAQELVLQLHALQLDRQEFVCLKFLILFSLDVKF 168 (246)
T ss_dssp HHHHHHHHHHHHHCCTTEEECTTSCEEEHHHHHHHCCHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHTCSCGGG
T ss_pred HHHHHHHHHHhhcCCCCeeEecCCCccchhhhhhhcchhHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccc
Confidence 3455555677776 4778888999888642100 01001114566777788999999999999999999999877543
No 14
>3tx7_B Nuclear receptor subfamily 5 group A member 2; LRH-1, beta-catenin, armadillo repeat, nuclear receptor LIGA binding domain, protein binding; HET: P6L; 2.76A {Homo sapiens}
Probab=82.26 E-value=2.9 Score=42.07 Aligned_cols=74 Identities=16% Similarity=0.255 Sum_probs=50.1
Q ss_pred HHHHHHHhhhcC-CCceeecCCceecccCCC--CccchhhhchhHHHHHHHHHhccCChhHHhHHHHhhhcCCCccc
Q 009289 418 FLQTLLYSIKAG-SGGLLLPDSVEITHLNRP--NNKLLDWFFNPIMVLKEQISVLKLTEPEVRYLEKVVLFGSTTER 491 (538)
Q Consensus 418 lL~~LL~SaKan-S~GlllsD~~EiT~~NrP--kdr~fDWff~PllviKEQIk~~~L~E~EE~yL~KlvL~~~d~~r 491 (538)
+|..--||.+.+ .+.+++.||.++...+-. ...-++=+.+.+.-+-+.++.++++++|=.||+-++|++.|...
T Consensus 198 lL~~a~rs~~~~~~~~ll~~~G~~i~~~~~~~~~g~~~~~l~~~l~~l~~~l~~L~ld~~EyalLkAIvLfnpd~~g 274 (352)
T 3tx7_B 198 ILDHIYRQVVHGKEGSIFLVTGQQVDYSIIASQAGATLNNLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKN 274 (352)
T ss_dssp HHHHHHHHHHTCCSSCCBCTTCCBCCHHHHHHTSCHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHSCSCC--
T ss_pred HHHHHHHHHhcCCCCeEEecCCCcccHHHHHHhccccHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Confidence 333334677765 477888999877543211 11111334567777889999999999999999999999987544
No 15
>1fcy_A RAR-gamma-1, retinoic acid receptor gamma-1; isotype selectivity, retinoid ligand complexes, drug design, antiparallel alpha-helical sandwich fold; HET: 564 LMU; 1.30A {Homo sapiens} SCOP: a.123.1.1 PDB: 1fcz_A* 1fcx_A* 1fd0_A* 1exa_A* 1exx_A* 1dkf_B*
Probab=81.84 E-value=2.8 Score=38.64 Aligned_cols=65 Identities=11% Similarity=0.172 Sum_probs=45.7
Q ss_pred HHhhhcCCCceeecCCceecccCCCCccchhhhchhHHHHHHHHHhccCChhHHhHHHHhhhcCCCc
Q 009289 423 LYSIKAGSGGLLLPDSVEITHLNRPNNKLLDWFFNPIMVLKEQISVLKLTEPEVRYLEKVVLFGSTT 489 (538)
Q Consensus 423 L~SaKanS~GlllsD~~EiT~~NrPkdr~fDWff~PllviKEQIk~~~L~E~EE~yL~KlvL~~~d~ 489 (538)
-+|.. .++.+++.||..++...-.+..+-+ +.+.+.-+-.+++.++++++|=.||+-++|++.|.
T Consensus 96 ~~~~~-~~~~l~~~~g~~~~~~~~~~~g~~~-~~~~i~~~~~~l~~L~ld~~E~~lLkaivL~~pd~ 160 (236)
T 1fcy_A 96 TRYTP-EQDTMTFSDGLTLNRTQMHNAGFGP-LTDLVFAFAGQLLPLEMDDTETGLLSAICLICGDR 160 (236)
T ss_dssp HTEET-TTTEEECTTCBEEEHHHHHHHTTGG-GHHHHHHHHHHHGGGCCCHHHHHHHHHHHHSCTTS
T ss_pred HHhcc-CCCeEEeCCCceecHHHHHHcCcHH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCC
Confidence 34443 4578999999877542111111222 45666667789999999999999999999998764
No 16
>3kmr_A Retinoic acid receptor alpha; nuclear receptor transcription factor ligand binding domain, binding, metal-binding, nucleus, phosphoprotein; HET: EQN; 1.80A {Homo sapiens} PDB: 3kmz_B* 3a9e_B* 4dm6_A* 1xap_A* 4dm8_A* 2lbd_A* 3lbd_A* 4lbd_A*
Probab=80.86 E-value=3.5 Score=39.20 Aligned_cols=61 Identities=11% Similarity=0.237 Sum_probs=44.2
Q ss_pred CCCceeecCCceecccCCCCccchhhhchhHHHHHHHHHhccCChhHHhHHHHhhhcCCCcc
Q 009289 429 GSGGLLLPDSVEITHLNRPNNKLLDWFFNPIMVLKEQISVLKLTEPEVRYLEKVVLFGSTTE 490 (538)
Q Consensus 429 nS~GlllsD~~EiT~~NrPkdr~fDWff~PllviKEQIk~~~L~E~EE~yL~KlvL~~~d~~ 490 (538)
+++.+++.||..++...-.+..+ .=+.+.+.-+-.+++.++++++|=.||+-++|++.|..
T Consensus 125 ~~~~l~~~~g~~~~~~~~~~~g~-~~~~~~i~~~~~~l~~L~ld~~E~~lLkAIvL~~pd~~ 185 (266)
T 3kmr_A 125 EQDTMTFSDGLTLNRTQMHNAGF-GPLTDLVFAFANQLLPLEMDDAETGLLSAICLICGDRQ 185 (266)
T ss_dssp TTTEEECTTSBEEEHHHHHHHTT-GGGHHHHHHHHHHHGGGCCCHHHHHHHHHHHHSCTTST
T ss_pred CCCeEEecCCcccchHHHhhcch-HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC
Confidence 45788999998775432111111 22456666677899999999999999999999987754
No 17
>1l2j_A Estrogen receptor beta; nuclear receptor, transcription factor, antagonist transcription receptor; HET: ETC; 2.95A {Homo sapiens} SCOP: a.123.1.1
Probab=79.42 E-value=3.4 Score=39.31 Aligned_cols=74 Identities=16% Similarity=0.283 Sum_probs=49.5
Q ss_pred HHHHHHHHHhhhcCCCceeecCCceecccCCC-CccchhhhchhHHHHHHHHHhccCChhHHhHHHHhhhcCCCccc
Q 009289 416 YSFLQTLLYSIKAGSGGLLLPDSVEITHLNRP-NNKLLDWFFNPIMVLKEQISVLKLTEPEVRYLEKVVLFGSTTER 491 (538)
Q Consensus 416 yslL~~LL~SaKanS~GlllsD~~EiT~~NrP-kdr~fDWff~PllviKEQIk~~~L~E~EE~yL~KlvL~~~d~~r 491 (538)
..+|..--+|.+. ++.+++.||..++..... ...+-+ +++++.-+-.+++.++++++|=.||+-++|++.|...
T Consensus 104 l~iL~~a~rs~~~-~~~l~~~~g~~~~~~~~~~~~g~~~-~~~~l~~~~~~l~~L~ld~~E~~lLkAIvLfnpd~~g 178 (271)
T 1l2j_A 104 VLMMGLMWRSIDH-PGKLIFAPDLVLDRDEGKCVEGILE-IFDMLLATTSRFRELKLQHKEYLCVKAMILLNSSMYP 178 (271)
T ss_dssp HHHHHHHHHTSSS-TTEECSSSSCCEETGGGGGSTTHHH-HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHhhcc-CCeeeecCCccccchhhhhhccHHH-HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCcCC
Confidence 3444444566665 477888999866543211 122333 4567777789999999999999999999999877543
No 18
>3ipq_A Oxysterols receptor LXR-alpha; LXR homodimer, LXR signaling, alternative DNA-binding, metal-binding, nucleus, polymorphism, receptor transcription; HET: 965; 2.00A {Homo sapiens} PDB: 3ips_A* 3ipu_A* 3fc6_B* 3fal_B* 1uhl_B* 2acl_B* 1upv_A* 1upw_A* 1p8d_A* 1pq9_A* 1pq6_A* 1pqc_A* 3kfc_A* 4dk7_A* 4dk8_A* 3l0e_A*
Probab=79.17 E-value=4.1 Score=38.92 Aligned_cols=64 Identities=19% Similarity=0.314 Sum_probs=47.2
Q ss_pred hcCCCceeecCCceecccCCCCccchhhhchhHHHHHHHHHhccCChhHHhHHHHhhhcCCCcc
Q 009289 427 KAGSGGLLLPDSVEITHLNRPNNKLLDWFFNPIMVLKEQISVLKLTEPEVRYLEKVVLFGSTTE 490 (538)
Q Consensus 427 KanS~GlllsD~~EiT~~NrPkdr~fDWff~PllviKEQIk~~~L~E~EE~yL~KlvL~~~d~~ 490 (538)
..+++.+++.||..++...-.+..+-.-+.+.+.-+-..++.++++++|=.||+-++|++.|..
T Consensus 143 ~~~~~~~~~~~g~~~~~~~~~~~g~~~~~~~~l~~~~~~l~~L~ld~~E~~lLkAIvL~npd~~ 206 (283)
T 3ipq_A 143 NPGSESITFLKDFSYNREDFAKAGLQVEFINPIFEFSRAMNELQLNDAEFALLIAISIFSADRP 206 (283)
T ss_dssp ETTTTEEEETTTEEECHHHHHHTTCCHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHTCTTST
T ss_pred cCCCCeEEeCCCceecHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Confidence 3456778888988775422112222235677888888999999999999999999999988754
No 19
>3plz_A FTZ-F1 related protein; alpha helical sandwhich, family five, TRAN factor, transcription-receptor-agonist comple; HET: 470; 1.75A {Homo sapiens} SCOP: a.123.1.1 PDB: 1yok_A* 1yuc_A* 4dor_A* 1zdu_A* 4dos_A* 1zh7_A 1pk5_A 3f5c_A
Probab=78.47 E-value=5.2 Score=37.78 Aligned_cols=75 Identities=16% Similarity=0.239 Sum_probs=52.4
Q ss_pred HHHHHHHHHhhhcC-CCceeecCCceecccCCC-Cccc-hhhhchhHHHHHHHHHhccCChhHHhHHHHhhhcCCCcc
Q 009289 416 YSFLQTLLYSIKAG-SGGLLLPDSVEITHLNRP-NNKL-LDWFFNPIMVLKEQISVLKLTEPEVRYLEKVVLFGSTTE 490 (538)
Q Consensus 416 yslL~~LL~SaKan-S~GlllsD~~EiT~~NrP-kdr~-fDWff~PllviKEQIk~~~L~E~EE~yL~KlvL~~~d~~ 490 (538)
..+|..--+|.+.+ ++.+++.||.+++...-. .... +.=+.+.+.-+-.+++.++++++|=.||+-++|++.|..
T Consensus 101 l~lL~~a~rs~~~~~~~~l~~~~g~~~~~~~~~~~~g~~~~~~~~~l~~~~~~l~~L~ld~~E~~lLkAivL~npd~~ 178 (257)
T 3plz_A 101 LLILDHIYRQVVHGKEGSIFLVTGQQVDYSIIASQAGATLNNLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVK 178 (257)
T ss_dssp HHHHHHHHHHHHHCBTTEEECTTSCEEEHHHHHTTSCHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHSCTTCC
T ss_pred HHHHHHHHHHhhcCCCCeEEecCCCccChHHHhhhcCCcHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Confidence 34444455777766 678889999887643211 1111 012356677788999999999999999999999997653
No 20
>1sqn_A PR, progesterone receptor; nuclear receptor, steroid receptor, norethindrone, birth control, hormone/growth factor receptior complex; HET: NDR; 1.45A {Homo sapiens} SCOP: a.123.1.1 PDB: 3g8o_A* 3g8n_A* 3d90_A* 1e3k_A* 1sr7_A* 1zuc_B* 3zr7_A* 2w8y_A* 3zra_A* 3zrb_A* 4a2j_A* 4apu_A* 1a28_A* 2ovh_A* 2ovm_A* 3hq5_A* 3kba_A*
Probab=77.93 E-value=8.3 Score=36.37 Aligned_cols=70 Identities=11% Similarity=0.176 Sum_probs=48.3
Q ss_pred HHHHHHHHhhhcCCCc-eeecCCceecccCCCCccchhhhchhHHHHHHHHHhccCChhHHhHHHHhhhcCC
Q 009289 417 SFLQTLLYSIKAGSGG-LLLPDSVEITHLNRPNNKLLDWFFNPIMVLKEQISVLKLTEPEVRYLEKVVLFGS 487 (538)
Q Consensus 417 slL~~LL~SaKanS~G-lllsD~~EiT~~NrPkdr~fDWff~PllviKEQIk~~~L~E~EE~yL~KlvL~~~ 487 (538)
.+|..--+|.+.+.+. +++.+|.-++..+-....+.+ +.+.+.-+-..++.++++++|=.||+-++|++.
T Consensus 87 ~~L~~a~~s~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~l~~L~ld~~E~~lLkAIvLfnp 157 (261)
T 1sqn_A 87 MVFGLGWRSYKHVSGQMLYFAPDLILNEQRMKESSFYS-LCLTMWQIPQEFVKLQVSQEEFLCMKVLLLLNT 157 (261)
T ss_dssp HHHHHHHHHHHHHTTSSEEEETTEEECGGGCCSHHHHH-HHHHHHHHHHHHHHHTCCHHHHHHHHHHHHTSE
T ss_pred HHHHHHHHhhhcCCCCeEEeCCCcccchHhhhhhhHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC
Confidence 4455555666654333 667888766543322233445 346677778899999999999999999999987
No 21
>3ilz_A Thyroid hormone receptor, alpha isoform 1 variant; nuclear receptor, signaling protein; HET: B72; 1.85A {Homo sapiens} SCOP: a.123.1.1 PDB: 3jzb_A* 3hzf_A* 2h79_A* 2h77_A* 1nav_A* 3uvv_A* 1xzx_X* 1y0x_X* 1nq1_A* 3jzc_A* 1nuo_A* 3imy_A* 1nq0_A* 1bsx_A* 1r6g_A* 1nq2_A* 3gws_X* 1n46_A* 2h6w_X* 2j4a_A* ...
Probab=76.89 E-value=5.4 Score=37.78 Aligned_cols=61 Identities=23% Similarity=0.302 Sum_probs=43.6
Q ss_pred CCCceeecCCceecccCCCCccchhhhchhHHHHHHHHHhccCChhHHhHHHHhhhcCCCcc
Q 009289 429 GSGGLLLPDSVEITHLNRPNNKLLDWFFNPIMVLKEQISVLKLTEPEVRYLEKVVLFGSTTE 490 (538)
Q Consensus 429 nS~GlllsD~~EiT~~NrPkdr~fDWff~PllviKEQIk~~~L~E~EE~yL~KlvL~~~d~~ 490 (538)
+++.+++.||..++...-....+-+ +.+.+.-+-..++.++++++|=.||+-++|++.|..
T Consensus 127 ~~~~l~~~~g~~~~~~~~~~~~~~~-~~~~i~~~~~~l~~L~ld~~E~~lLkAivL~~pd~~ 187 (267)
T 3ilz_A 127 ESDTLTLSGEMAVKREQLKNGGLGV-VSDAIFELGKSLSAFNLDDTEVALLQAVLLMSTDRS 187 (267)
T ss_dssp TTTBEEETTTEEECHHHHHHTTTTH-HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHSCCCSS
T ss_pred CCCEEEecCCeeecHHHHhccCHHH-HHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC
Confidence 4567888999876643211111112 456666777899999999999999999999998753
No 22
>3n00_A REV-ERBA-alpha; reverba ncorid1, anti-parallel B-sheet, transcription regula; 2.60A {Homo sapiens}
Probab=76.67 E-value=8.2 Score=36.31 Aligned_cols=63 Identities=16% Similarity=0.227 Sum_probs=36.0
Q ss_pred cCCCceeecCCceecccCCCCccchhhhchhHHHHHHHHHhccCChhHHhHHHHhhhcCCCccc
Q 009289 428 AGSGGLLLPDSVEITHLNRPNNKLLDWFFNPIMVLKEQISVLKLTEPEVRYLEKVVLFGSTTER 491 (538)
Q Consensus 428 anS~GlllsD~~EiT~~NrPkdr~fDWff~PllviKEQIk~~~L~E~EE~yL~KlvL~~~d~~r 491 (538)
.+.+.+++.||..++..+-....+-+ +++++.-+-+.++.++++++|=.||+-++|++.|...
T Consensus 121 ~~~~~l~~~~g~~~~~~~~~~~~~~~-~~~~i~~~~~~l~~L~ld~~E~~lLkAIvL~npd~~g 183 (245)
T 3n00_A 121 VKDQTVMFLSRTTYSLQELGAMGMGD-LLSAMFDFSEKLNSLALTEEELGLFTAVVLVSADRSG 183 (245)
T ss_dssp SCC--------------CCGGGTTHH-HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTSCCTT
T ss_pred CCCCeEEecCCCeecHHHHhhccHHH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC
Confidence 44566777888877543322222333 4577778888999999999999999999999976533
No 23
>1xdk_B RAR-beta, retinoic acid receptor, beta; nuclear receptor, coactivator, ligand, hormone/growth factor receptor complex; HET: REA; 2.90A {Mus musculus} SCOP: a.123.1.1
Probab=76.28 E-value=4.5 Score=39.14 Aligned_cols=71 Identities=11% Similarity=0.193 Sum_probs=49.1
Q ss_pred HHHHHHHhhhcCCCceeecCCceecccCCCCccchhhhchhHHHHHHHHHhccCChhHHhHHHHhhhcCCCcc
Q 009289 418 FLQTLLYSIKAGSGGLLLPDSVEITHLNRPNNKLLDWFFNPIMVLKEQISVLKLTEPEVRYLEKVVLFGSTTE 490 (538)
Q Consensus 418 lL~~LL~SaKanS~GlllsD~~EiT~~NrPkdr~fDWff~PllviKEQIk~~~L~E~EE~yL~KlvL~~~d~~ 490 (538)
+|..--+|.+ .++.+++.||..++...-....+-+ +++++.-+-.+++.++++++|=.||+-++|++.|..
T Consensus 118 lL~~a~~s~~-~~~~l~~~~g~~~~~~~~~~~g~~~-~~~~i~~~~~~l~~L~ld~~E~~lLkAivL~~pd~~ 188 (303)
T 1xdk_B 118 ILRICTRYTP-EQDTMTFSDGLTLNRTQMHNAGFGP-LTDLVFTFANQLLPLEMDDTETGLLSAICLICGDRQ 188 (303)
T ss_dssp HHHHHTTEET-TTTEEECTTCBEEEHHHHHHTTTGG-GHHHHHHHHHHHGGGCCCHHHHHHHHHHHHSCSCSS
T ss_pred HHHHHHHhcc-cCCeEEecCCceecHHHHhhcCcHH-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCC
Confidence 3333344554 3578999999877643211112222 456777788999999999999999999999987643
No 24
>2ocf_A Estrogen receptor; estrogen receptor, LBD, monobody, estradiol, hormone-growth complex; HET: CME EST; 2.95A {Homo sapiens}
Probab=76.16 E-value=6.8 Score=38.14 Aligned_cols=72 Identities=14% Similarity=0.288 Sum_probs=51.2
Q ss_pred HHHHHHHHHhhhcCCCceeecCCceecccCC-CCccchhhhchhHHHHHHHHHhccCChhHHhHHHHhhhcCCCc
Q 009289 416 YSFLQTLLYSIKAGSGGLLLPDSVEITHLNR-PNNKLLDWFFNPIMVLKEQISVLKLTEPEVRYLEKVVLFGSTT 489 (538)
Q Consensus 416 yslL~~LL~SaKanS~GlllsD~~EiT~~Nr-Pkdr~fDWff~PllviKEQIk~~~L~E~EE~yL~KlvL~~~d~ 489 (538)
..+|..--+|.+.+ +.+++.||..++.... -...+-+ +++.+.-+-.+++.++++++|=.||+-++|++.|.
T Consensus 89 l~lL~~a~rs~~~~-~~l~~~~g~~~~~~~~~~~~g~~~-~~~~l~~~~~~l~~L~ld~~Ey~lLkAIvLfnpd~ 161 (298)
T 2ocf_A 89 ILMIGLVWRSMEHP-GKLLFAPNLLLDRNQGKCVEGMVE-IFDMLLATSSRFRMMNLQGEEFVCLKSIILLNSGV 161 (298)
T ss_dssp HHHHHHHHHTTTST-TEEEEETTEEEEHHHHTTSTTHHH-HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC
T ss_pred HHHHHHHHHhcccC-CceeecCCceechhhhhhhhhHHH-HHHHHHHHHHhHhhhCcCHHHHHHHHHHHHcCCCc
Confidence 34455555666654 7889999987764321 1122334 35667667789999999999999999999998775
No 25
>3cqv_A Nuclear receptor subfamily 1 group D member 2; reverb beta, heme, NR1D2, DNA-binding, metal-binding, nucleus, repressor, transcription; HET: HEM; 1.90A {Homo sapiens} PDB: 2v7c_A 2v0v_A
Probab=76.00 E-value=4.4 Score=36.40 Aligned_cols=63 Identities=16% Similarity=0.237 Sum_probs=45.5
Q ss_pred hcCCCceeecCCceecccCCCCccchhhhchhHHHHHHHHHhccCChhHHhHHHHhhhcCCCcc
Q 009289 427 KAGSGGLLLPDSVEITHLNRPNNKLLDWFFNPIMVLKEQISVLKLTEPEVRYLEKVVLFGSTTE 490 (538)
Q Consensus 427 KanS~GlllsD~~EiT~~NrPkdr~fDWff~PllviKEQIk~~~L~E~EE~yL~KlvL~~~d~~ 490 (538)
..+++.+++.||..++...-....+-+ +++++.-+-++++.++++++|=.||+-++|++.|..
T Consensus 75 ~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~L~ld~~E~~lLkaivL~~pd~~ 137 (199)
T 3cqv_A 75 DAKERTVTFLSGKKYSVDDLHSMGAGD-LLNSMFEFSEKLNALQLSDEEMSLFTAVVLVSADRS 137 (199)
T ss_dssp ETTTTEEECTTSCEEEHHHHHHTTCCH-HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTSCCT
T ss_pred CCCCCeEEecCCCeecHHHHHhcCcHH-HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC
Confidence 345667888899877643211111222 457777888999999999999999999999987653
No 26
>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A*
Probab=75.11 E-value=6.3 Score=40.93 Aligned_cols=65 Identities=17% Similarity=0.369 Sum_probs=45.8
Q ss_pred cCCCceeecCCceecccCCCCccchhhhchhHH-HHHHHHHhccCChhHHhHHHHhhhcCCCccccc
Q 009289 428 AGSGGLLLPDSVEITHLNRPNNKLLDWFFNPIM-VLKEQISVLKLTEPEVRYLEKVVLFGSTTERME 493 (538)
Q Consensus 428 anS~GlllsD~~EiT~~NrPkdr~fDWff~Pll-viKEQIk~~~L~E~EE~yL~KlvL~~~d~~r~~ 493 (538)
...+++++.||..++..+--...+-+ +++.++ -+-+.++++++|++|=.||+-++|++.|.....
T Consensus 324 ~~~~~~ll~~g~~i~~~~~~~~~~~~-~~~~il~~lv~~l~~L~ld~~E~~lLkAIvLfnpd~~gL~ 389 (467)
T 3dzy_A 324 AVKDGILLATGLHVHRNSAHSAGVGA-IFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLS 389 (467)
T ss_dssp SSTTBCCCSSSCCCBTHHHHTTTCHH-HHHHHHHHTHHHHHHHTCCHHHHHHHHHHHHSCTTSTTCS
T ss_pred cCCCceEecCCceechhhhhhhcchH-HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCC
Confidence 36788999999877654322222323 233333 566789999999999999999999998765533
No 27
>1t7r_A Androgen receptor; nuclear receptor, transcription factor, ligand binding domain, AF-2, androgen, testosterone, DHT, alpha-helical sandwich; HET: DHT; 1.40A {Pan troglodytes} SCOP: a.123.1.1 PDB: 1t73_A* 1t76_A* 1t74_A* 1t79_A* 1t7m_A* 1t7f_A* 1t7t_A* 2am9_A* 2ama_A* 2amb_A* 2pnu_A* 1e3g_A* 2q7i_A* 1xj7_A* 2q7j_A* 3g0w_A* 2ihq_A* 2nw4_A* 1i37_A* 2q7k_A* ...
Probab=74.68 E-value=5.6 Score=37.73 Aligned_cols=69 Identities=12% Similarity=0.154 Sum_probs=46.2
Q ss_pred HHHHHHHhhhcCCC-ceeecCCceecccCCCCccchhhhchhHHHHHHHHHhccCChhHHhHHHHhhhcCC
Q 009289 418 FLQTLLYSIKAGSG-GLLLPDSVEITHLNRPNNKLLDWFFNPIMVLKEQISVLKLTEPEVRYLEKVVLFGS 487 (538)
Q Consensus 418 lL~~LL~SaKanS~-GlllsD~~EiT~~NrPkdr~fDWff~PllviKEQIk~~~L~E~EE~yL~KlvL~~~ 487 (538)
+|..--||...+.+ -++..||..++..+-....+.+++ +.+.-+-.++++++++++|=.||+-++|++.
T Consensus 96 iL~~a~rs~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~-~~i~~~~~~l~~L~ld~~E~~lLkAIvLfnp 165 (269)
T 1t7r_A 96 VFAMGWRSFTNVNSRMLYFAPDLVFNEYRMHKSRMYSQC-VRMRHLSQEFGWLQITPQEFLCMKALLLFSI 165 (269)
T ss_dssp HHHHHHHHHHHHTTSSEEEETTEEECHHHHHHTTCHHHH-HHHHHHHHHHHHTTCCHHHHHHHHHHHHTSE
T ss_pred HHHHHHHhcccCCCCeEEeCCCceecHHhhhhhhHHHHH-HHHHHHHHHHHHhCCCHHHHHHHHHHHHcCC
Confidence 33333356655433 466778876554321123344543 6677777899999999999999999999987
No 28
>2r40_D Ecdysone receptor, 20-hydroxy-ecdysone receptor; nuclear receptor ligand-binding domain, anti-parallel alpha- sandwich, ecdysone receptor, ECR, gene regulation; HET: FLC 20E EPH; 2.40A {Heliothis virescens} SCOP: a.123.1.1 PDB: 1r1k_D* 3ixp_D* 1r20_D*
Probab=74.62 E-value=4.9 Score=38.05 Aligned_cols=58 Identities=12% Similarity=0.210 Sum_probs=42.9
Q ss_pred cCCCceeecCCceecccCCCCccchhhhchhHHHHHHHHHhccCChhHHhHHHHhhhcC
Q 009289 428 AGSGGLLLPDSVEITHLNRPNNKLLDWFFNPIMVLKEQISVLKLTEPEVRYLEKVVLFG 486 (538)
Q Consensus 428 anS~GlllsD~~EiT~~NrPkdr~fDWff~PllviKEQIk~~~L~E~EE~yL~KlvL~~ 486 (538)
..++.+++.||..++...-....+-+ +.+.+.-+-.+++.++++++|=.||+-++|++
T Consensus 124 ~~~~~l~~~~g~~~~~~~~~~~g~~~-~~~~l~~~~~~l~~L~ld~~E~~lLkAivL~n 181 (266)
T 2r40_D 124 AATDSVLFANNQAYTRDNYRKAGMAY-VIEDLLHFCRCMYSMMMDNVHYALLTAIVIFS 181 (266)
T ss_dssp TTTTEEECTTSCEECHHHHHHTTCHH-HHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTS
T ss_pred CCCCeEEecCCceecHHHHhhcCHHH-HHHHHHHHHHHHhcccCCHHHHHHHhhheeec
Confidence 45678999999887532111112223 46777777789999999999999999999998
No 29
>1xpc_A Estrogen receptor; nuclear receptor, transcription factor, ER-alpha, antagonist hormone-growth factor receptor complex; HET: AIT; 1.60A {Homo sapiens} SCOP: a.123.1.1 PDB: 1sj0_A* 1xp1_A* 1xp9_A* 1xp6_A* 1yim_A* 1yin_A* 3ert_A* 1r5k_A* 3erd_A* 1l2i_A* 2iok_A* 1a52_A* 2ouz_A* 1ere_A* 1err_A* 2qxs_A* 3q95_A* 3q97_A* 2b1z_A* 1zky_A* ...
Probab=73.44 E-value=7.1 Score=36.22 Aligned_cols=72 Identities=14% Similarity=0.300 Sum_probs=51.0
Q ss_pred HHHHHHHHHhhhcCCCceeecCCceecccCCC-CccchhhhchhHHHHHHHHHhccCChhHHhHHHHhhhcCCCc
Q 009289 416 YSFLQTLLYSIKAGSGGLLLPDSVEITHLNRP-NNKLLDWFFNPIMVLKEQISVLKLTEPEVRYLEKVVLFGSTT 489 (538)
Q Consensus 416 yslL~~LL~SaKanS~GlllsD~~EiT~~NrP-kdr~fDWff~PllviKEQIk~~~L~E~EE~yL~KlvL~~~d~ 489 (538)
..+|..--+|.+.+ +.+++.||..++..... .+.+-+ +++.+.-+-.+++.++++++|=.||+-++|++.|.
T Consensus 80 l~~L~~a~~s~~~~-~~l~~~~g~~~~~~~~~~~~~~~~-~~~~l~~~~~~l~~L~ld~~E~~lLkAivL~~pd~ 152 (248)
T 1xpc_A 80 ILMIGLVWRSMEHP-GKLLFAPNLLLDRNQGKCVEGMVE-IFDMLLATSSRFRMMNLQGEEFVCLKSIILLNSGV 152 (248)
T ss_dssp HHHHHHHHHHTTST-TEEEEETTEEEEHHHHTTSTTHHH-HHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhcccc-CceeecCCceeCccchhhhccHHH-HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCcc
Confidence 45566666777654 78899999766543211 122333 34566667789999999999999999999998775
No 30
>3cjw_A COUP transcription factor 2; COUP-TFII, nuclear receptor, ligand binding domain, orphan receptor, three-layered helical sandwich, DNA-binding; 1.48A {Homo sapiens}
Probab=72.39 E-value=17 Score=33.56 Aligned_cols=71 Identities=20% Similarity=0.342 Sum_probs=36.8
Q ss_pred HHHHHHHHhhhcCCCceeecCCceecccCCCCccchhhhchhHHHH---HHHHHhccCChhHHhHHHHhhhcCCCcc
Q 009289 417 SFLQTLLYSIKAGSGGLLLPDSVEITHLNRPNNKLLDWFFNPIMVL---KEQISVLKLTEPEVRYLEKVVLFGSTTE 490 (538)
Q Consensus 417 slL~~LL~SaKanS~GlllsD~~EiT~~NrPkdr~fDWff~Pllvi---KEQIk~~~L~E~EE~yL~KlvL~~~d~~ 490 (538)
.+|..--+|.+.+..-++..||......+ .+++.. |++++-.+ -++++.++++++|=.||+-++|++.|..
T Consensus 83 ~~L~~a~~s~~~~~~~~l~~~g~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~L~ld~~E~~lLkaivL~~pd~~ 156 (244)
T 3cjw_A 83 FVLNAAQCSMPLHVAPLLAAAGLHASPMS--ADRVVA-FMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDAC 156 (244)
T ss_dssp HHHHHHHHTCCCSCCC-------------------CC-CSHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHSCTTST
T ss_pred HHHHHHHHhccccccccccccccccCccc--hhhhHH-HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC
Confidence 34444456666666556666665332111 123222 22333333 4578999999999999999999987753
No 31
>1nq7_A Nuclear receptor ROR-beta; ligand-binding domain, retinoids, retinoic acid, synthetic ligand, antagonist, transcription; HET: ARL; 1.50A {Rattus norvegicus} SCOP: a.123.1.1 PDB: 1k4w_A* 1n4h_A*
Probab=71.97 E-value=17 Score=33.80 Aligned_cols=60 Identities=17% Similarity=0.133 Sum_probs=42.5
Q ss_pred cCCCceeecCCceecccCCCCccchhhhchhHHHHHHHHHhccCChhHHhHHHHhhhcCCCc
Q 009289 428 AGSGGLLLPDSVEITHLNRPNNKLLDWFFNPIMVLKEQISVLKLTEPEVRYLEKVVLFGSTT 489 (538)
Q Consensus 428 anS~GlllsD~~EiT~~NrPkdr~fDWff~PllviKEQIk~~~L~E~EE~yL~KlvL~~~d~ 489 (538)
..++.+++ ||..++...-....+-+ +.+++.-+-.+++.++++++|=.||+-++|++.|.
T Consensus 106 ~~~~~~~~-~g~~~~~~~~~~~~~~~-~~~~i~~~~~~l~~L~ld~~E~~lLkAivL~~pd~ 165 (244)
T 1nq7_A 106 PLNNTVLF-EGKYGGMQMFKALGSDD-LVNEAFDFAKNLCSLQLTEEEIALFSSAVLISPDR 165 (244)
T ss_dssp TTTTEEEE-TTEEEEGGGGGGGSCHH-HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHSCTTS
T ss_pred CCCCEEeE-CCEEecHHHHhhcChHH-HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCC
Confidence 35566777 88766532111112233 45677777889999999999999999999998774
No 32
>1ovl_A Orphan nuclear receptor NURR1 (MSe 414, 496, 511); NUUR1, LBD, transcription; 2.20A {Homo sapiens} SCOP: a.123.1.1
Probab=70.59 E-value=15 Score=34.47 Aligned_cols=67 Identities=10% Similarity=0.184 Sum_probs=48.3
Q ss_pred HHHHHHHHhhhcCCCceeecCCceecccCCCCccchhhhchhHHHHHHHHHhccCChhHHhHHHHhhhcC
Q 009289 417 SFLQTLLYSIKAGSGGLLLPDSVEITHLNRPNNKLLDWFFNPIMVLKEQISVLKLTEPEVRYLEKVVLFG 486 (538)
Q Consensus 417 slL~~LL~SaKanS~GlllsD~~EiT~~NrPkdr~fDWff~PllviKEQIk~~~L~E~EE~yL~KlvL~~ 486 (538)
.+|..--+|... .+.+++.||..++..+ ....+ .-+++++.-+-.+++.++++++|=.||+-++|++
T Consensus 120 ~~L~~a~~s~~~-~~~l~~~~g~~~~~~~-~~~~~-~~~~~~l~~~~~~l~~L~ld~~E~~lLkAivL~~ 186 (271)
T 1ovl_A 120 FVLRLAYRSNPV-EGKLIFCNGVVLHRLQ-CVRGF-GEWIDSIVEFSSNLQNMNIDISAFSCIAALAMVT 186 (271)
T ss_dssp HHHHHHHHSBTT-TTEEECTTSBEEEHHH-HTTTT-TTHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHSS
T ss_pred HHHHHHHHhcCC-CCeEEeeCCeeecHHH-HHhhH-HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Confidence 344444455554 4689999998776532 12222 3356788888899999999999999999999996
No 33
>2nxx_E Ecdysone receptor (ECR, NRH1); hormone receptor, APO and holo ligand binding pocket, hormone/growth factor complex; HET: P1A; 2.75A {Tribolium castaneum}
Probab=70.07 E-value=8.6 Score=35.83 Aligned_cols=58 Identities=9% Similarity=0.197 Sum_probs=42.5
Q ss_pred cCCCceeecCCceecccCCCCccchhhhchhHHHHHHHHHhccCChhHHhHHHHhhhcC
Q 009289 428 AGSGGLLLPDSVEITHLNRPNNKLLDWFFNPIMVLKEQISVLKLTEPEVRYLEKVVLFG 486 (538)
Q Consensus 428 anS~GlllsD~~EiT~~NrPkdr~fDWff~PllviKEQIk~~~L~E~EE~yL~KlvL~~ 486 (538)
.+++.+++.||..++...-....+-+ +.+.+.-+-..++.++++++|=.||+-++|++
T Consensus 108 ~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~i~~~~~~l~~L~ld~~E~~lLkAivL~~ 165 (248)
T 2nxx_E 108 VQTDSILFVNNQPYSRDSYNLAGMGE-TIEDLLHFCRTMYSMRVDNAEYALLTAIVIFS 165 (248)
T ss_dssp TTTTEEECTTSCEECHHHHHHTTCHH-HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHTC
T ss_pred CCCCeEEecCCceecHHHHHhcchHH-HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHcC
Confidence 46778999999877532211112222 45677777889999999999999999999985
No 34
>3vhv_A Mineralocorticoid receptor; nuclear receptor, transcription factor, activating mutation, hypertension, non-steroidal antagonist; HET: LD1 LD2; 1.35A {Homo sapiens} SCOP: a.123.1.1 PDB: 2aax_A* 2aa6_A* 2ab2_A* 2aa2_A* 2aa5_A* 2aa7_A* 2a3i_A* 1y9r_A* 1ya3_A* 2oax_A* 2abi_A* 2q1h_A* 2q1v_A* 2q3y_A* 3ry9_A* 4fne_A* 4fn9_A*
Probab=68.63 E-value=11 Score=35.60 Aligned_cols=69 Identities=14% Similarity=0.125 Sum_probs=47.6
Q ss_pred HHHHHHHhhhcC-CCceeecCCceecccCCCCccchhhhchhHHHHHHHHHhccCChhHHhHHHHhhhcCC
Q 009289 418 FLQTLLYSIKAG-SGGLLLPDSVEITHLNRPNNKLLDWFFNPIMVLKEQISVLKLTEPEVRYLEKVVLFGS 487 (538)
Q Consensus 418 lL~~LL~SaKan-S~GlllsD~~EiT~~NrPkdr~fDWff~PllviKEQIk~~~L~E~EE~yL~KlvL~~~ 487 (538)
+|..--+|.+.+ ++.++..||..++...--...+.| +.+++.-+-+.+++++++++|=.||+-++|++.
T Consensus 87 ~L~~a~rs~~~~~~~~l~~~~g~~~~~~~~~~~~~~~-~~~~l~~~~~~l~~L~ld~~E~~lLkAIvLfnp 156 (260)
T 3vhv_A 87 SFALSWRSYKHTNSQFLYFAPDLVFNEEKMHQSAMYE-LCQGMHQISLQFVRLQLTFEEYTIMKVLLLLST 156 (260)
T ss_dssp HHHHHHHHHHHHTTSSEEEETTEEECHHHHHHTTCHH-HHHHHHHHHHHHHHHTCCHHHHHHHHHHHHTSE
T ss_pred HHHHHHHhhccCCCCeEEecCCccccHHHhhcccHHH-HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCC
Confidence 444444666653 457888898766532211112333 356677778899999999999999999999987
No 35
>3vhu_A Mineralocorticoid receptor; nuclear receptor, transcription factor, activating mutation, hypertension, antagonist, spironolactone; HET: SNL; 2.11A {Homo sapiens}
Probab=65.28 E-value=9.8 Score=37.03 Aligned_cols=69 Identities=14% Similarity=0.125 Sum_probs=46.6
Q ss_pred HHHHHHHhhhcC-CCceeecCCceecccCCCCccchhhhchhHHHHHHHHHhccCChhHHhHHHHhhhcCC
Q 009289 418 FLQTLLYSIKAG-SGGLLLPDSVEITHLNRPNNKLLDWFFNPIMVLKEQISVLKLTEPEVRYLEKVVLFGS 487 (538)
Q Consensus 418 lL~~LL~SaKan-S~GlllsD~~EiT~~NrPkdr~fDWff~PllviKEQIk~~~L~E~EE~yL~KlvL~~~ 487 (538)
+|..--+|.+.+ ++.++..||..++...-....+.| +.+.+.-+-+.+++++++++|=.||+-++|++.
T Consensus 121 lL~~a~rS~~~~~~~~l~~~~g~~~~~~~~~~~~~~~-~~~~l~~~~~~l~~L~ld~~EyalLkAIvLfnp 190 (294)
T 3vhu_A 121 SFALSWRSYKHTNSQFLYFAPDLVFNEEKMHQSAMYE-LCQGMHQISLQFVRLQLTFEEYTIMKVLLLLST 190 (294)
T ss_dssp HHHHHHHHHHHHTTSSEEEETTEEECHHHHHHTTCHH-HHHHHHHHHHHHHHHTCCHHHHHHHHHHHHTSE
T ss_pred HHHHHHHhhhcCCCCeEEeCCCccccHHHhhcccHHH-HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCC
Confidence 444444666653 457888898776532111112233 345666677889999999999999999999987
No 36
>1pdu_A DHR38, nuclear hormone receptor HR38; nuclear receptor, ligand-binding domain, hormone/growth factor receptor complex; 2.30A {Drosophila melanogaster} SCOP: a.123.1.1
Probab=63.78 E-value=16 Score=34.27 Aligned_cols=66 Identities=12% Similarity=0.155 Sum_probs=46.1
Q ss_pred HHHHHHHhhhcCCCceeecCCceecccCCCCccchhhhchhHHHHHHHHHhccCChhHHhHHHHhhhcC
Q 009289 418 FLQTLLYSIKAGSGGLLLPDSVEITHLNRPNNKLLDWFFNPIMVLKEQISVLKLTEPEVRYLEKVVLFG 486 (538)
Q Consensus 418 lL~~LL~SaKanS~GlllsD~~EiT~~NrPkdr~fDWff~PllviKEQIk~~~L~E~EE~yL~KlvL~~ 486 (538)
+|..--+|. .+++.+++.||..++... ....+-+ +++.+.-+-+++++++++++|=.||+-++|++
T Consensus 94 lL~~a~rs~-~~~~~l~~~~g~~~~~~~-~~~~~~~-~~~~l~~~~~~l~~L~ld~~E~~lLkAIvLfn 159 (244)
T 1pdu_A 94 VLRLAYRAR-IDDTKLIFCNGTVLHRTQ-CLRSFGE-WLNDIMEFSRSLHNLEIDISAFACLCALTLIT 159 (244)
T ss_dssp HHHHHHHCC-SSCSEEECTTSBEEEHHH-HHHHHTT-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHSS
T ss_pred HHHHHHHhc-cCCCceEeeCCeeecHHH-HHhHHHH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 333334554 367789999998776421 1111223 45667777889999999999999999999995
No 37
>1z5x_E Ecdysone receptor ligand binding domain; ponasterone A, nuclear receptor, ECR, USP, hormone/growth factor receptor complex; HET: P1A; 3.07A {Bemisia tabaci}
Probab=59.21 E-value=16 Score=35.84 Aligned_cols=57 Identities=12% Similarity=0.200 Sum_probs=41.4
Q ss_pred CCCceeecCCceecccCCCCccchhhhchhHHHHHHHHHhccCChhHHhHHHHhhhcC
Q 009289 429 GSGGLLLPDSVEITHLNRPNNKLLDWFFNPIMVLKEQISVLKLTEPEVRYLEKVVLFG 486 (538)
Q Consensus 429 nS~GlllsD~~EiT~~NrPkdr~fDWff~PllviKEQIk~~~L~E~EE~yL~KlvL~~ 486 (538)
+++.+++.||..++...-....+- -+++.+.-+-..++.++++++|=.||+-++|++
T Consensus 173 ~~~~l~~~~g~~~~~~~~~~~g~~-~~~~~i~~~~~~l~~L~ld~~E~alLkAIvLf~ 229 (310)
T 1z5x_E 173 ETDSILFATNQPYTRESYTVAGMG-DTVEDLLRFCRHMCAMKVDNAEYALLTAIVIFS 229 (310)
T ss_dssp TTTEEECTTSCEECHHHHHHTTTH-HHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHTC
T ss_pred CCCeEEeCCCccccHHHHHhcchh-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcC
Confidence 677899999987653211111222 345667667789999999999999999999985
No 38
>3f5c_B Nuclear receptor subfamily 0 group B member 1; transcriptional corepressor, regulatory complex, DNA-binding, lipid-binding, metal-binding; 3.00A {Mus musculus}
Probab=55.34 E-value=25 Score=33.57 Aligned_cols=37 Identities=22% Similarity=0.221 Sum_probs=31.9
Q ss_pred hchhHHHHHHHHHhccCChhHHhHHHHhhhcCCCccc
Q 009289 455 FFNPIMVLKEQISVLKLTEPEVRYLEKVVLFGSTTER 491 (538)
Q Consensus 455 ff~PllviKEQIk~~~L~E~EE~yL~KlvL~~~d~~r 491 (538)
+.+.+.-+-++++.++++++|=.||+-++|++.|...
T Consensus 155 ~i~~l~~~~~~l~~L~ld~~E~~lLkAivL~npd~~g 191 (268)
T 3f5c_B 155 AVQAIKSFFFKCWSLNIDTKEYAYLKGTVLFNPDLPG 191 (268)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHSCTTSTT
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCC
Confidence 3467778889999999999999999999999977543
No 39
>3u9q_A Peroxisome proliferator-activated receptor gamma; nuclear receptor, adipogenesis, RXRA, nucleus, transcription; HET: DKA; 1.52A {Homo sapiens} SCOP: a.123.1.1 PDB: 1i7i_A* 3ty0_A* 1zeo_A* 2p4y_A* 3et3_A* 3et0_A* 2hwq_A* 2ath_A* 2f4b_A* 2g0g_A* 2g0h_A* 2gtk_A* 2fvj_A* 2hwr_A* 2prg_A* 2q8s_A* 3fej_A* 3g9e_A* 3gbk_A* 3ia6_A* ...
Probab=55.12 E-value=34 Score=32.63 Aligned_cols=62 Identities=13% Similarity=0.303 Sum_probs=42.9
Q ss_pred cCCCceeecCCceecccCC---CCccchhhhchhHHHHHHHHHhccCChhHHhHHHHhhhcCCCcc
Q 009289 428 AGSGGLLLPDSVEITHLNR---PNNKLLDWFFNPIMVLKEQISVLKLTEPEVRYLEKVVLFGSTTE 490 (538)
Q Consensus 428 anS~GlllsD~~EiT~~Nr---Pkdr~fDWff~PllviKEQIk~~~L~E~EE~yL~KlvL~~~d~~ 490 (538)
.+.+++++.+|......+. ..+.+-+ +.+++.-+-..++.++++++|=.||+-++|++.|..
T Consensus 127 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~l~~L~ld~~E~alLkAIvLfnpd~~ 191 (269)
T 3u9q_A 127 MNKDGVLISEGQGFMTREFLKSLRKPFGD-FMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRP 191 (269)
T ss_dssp EETTEEEETTTTEEEEHHHHHHSCTTGGG-SSHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCTTST
T ss_pred cCCCCeEEeCCCccccHHHHHHhhhhHHH-HHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCC
Confidence 3557888888765321111 1122223 356777788899999999999999999999997753
No 40
>1hg4_A Ultraspiracle; nuclear hormone receptor, transcription factor, ligand binding; HET: LPP; 2.4A {Drosophila melanogaster} SCOP: a.123.1.1
Probab=52.45 E-value=29 Score=32.59 Aligned_cols=30 Identities=20% Similarity=0.402 Sum_probs=26.0
Q ss_pred HHHHHHHhccCChhHHhHHHHhhhcCCCcc
Q 009289 461 VLKEQISVLKLTEPEVRYLEKVVLFGSTTE 490 (538)
Q Consensus 461 viKEQIk~~~L~E~EE~yL~KlvL~~~d~~ 490 (538)
-+-..+++++++++|=.||+-++|++.|..
T Consensus 163 ~~~~~~~~L~ld~~E~~lLkAivL~npd~~ 192 (279)
T 1hg4_A 163 ELSVKMKRLNLDRRELSCLKAIILYNPDIR 192 (279)
T ss_dssp HTHHHHHHHTCCHHHHHHHHHHHHSCTTST
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence 456789999999999999999999987643
No 41
>2o4j_A Vitamin D3 receptor; nuclear receptor-ligand complex, hormone/growth factor receptor complex; HET: VD4; 1.74A {Rattus norvegicus} SCOP: a.123.1.1 PDB: 1rk3_A* 1rjk_A* 1rkh_A* 1rkg_A* 2o4r_A*
Probab=51.74 E-value=26 Score=33.68 Aligned_cols=61 Identities=10% Similarity=0.068 Sum_probs=39.8
Q ss_pred CCCceeec-CCceecccCCCCccchhhhchhHHHHHHHHHhccCChhHHhHHHHhhhcCCCc
Q 009289 429 GSGGLLLP-DSVEITHLNRPNNKLLDWFFNPIMVLKEQISVLKLTEPEVRYLEKVVLFGSTT 489 (538)
Q Consensus 429 nS~Gllls-D~~EiT~~NrPkdr~fDWff~PllviKEQIk~~~L~E~EE~yL~KlvL~~~d~ 489 (538)
.++.++.. ||..++...-.+..+-+=+.+++.-+-.+++.++++++|=.||+-++|++.|.
T Consensus 116 ~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~l~~L~ld~~E~~lLkAIvLfnpd~ 177 (292)
T 2o4j_A 116 DDMSWDCGSQDYKYDVTDVSKAGHTLELIEPLIKFQVGLKKLNLHEEEHVLLMAICIVSPDR 177 (292)
T ss_dssp TTTEEECSSGGGEECHHHHHTTTCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHSCTTS
T ss_pred CCCeEEecCCCeEEcHHHHHhcCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Confidence 34445555 36555432111112221245666677789999999999999999999998774
No 42
>3b0t_A Vitamin D3 receptor; nuclear receptor, transcription, gene regulation; HET: MCZ; 1.30A {Homo sapiens} PDB: 3a40_X* 1s0z_A* 1s19_A* 2ham_A* 2har_A* 2has_A* 1txi_A* 2hb8_A* 2hb7_A* 3a3z_X* 3a78_A* 3auq_A* 3aur_A* 3ax8_A* 3cs4_A* 3cs6_A* 1ie9_A* 1db1_A* 1ie8_A* 3kpz_A* ...
Probab=51.24 E-value=31 Score=31.96 Aligned_cols=35 Identities=17% Similarity=0.347 Sum_probs=30.2
Q ss_pred hchhHHHHHHHHHhccCChhHHhHHHHhhhcCCCc
Q 009289 455 FFNPIMVLKEQISVLKLTEPEVRYLEKVVLFGSTT 489 (538)
Q Consensus 455 ff~PllviKEQIk~~~L~E~EE~yL~KlvL~~~d~ 489 (538)
+.+++.-+-..++.++++++|=.||+-++|++.|.
T Consensus 140 ~~~~l~~~~~~l~~L~ld~~E~~lLkAivL~~pd~ 174 (254)
T 3b0t_A 140 LIEPLIKFQVGLKKLNLHEEEHVLLMAICIVSPDR 174 (254)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHSCSCS
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCc
Confidence 44666667789999999999999999999998774
No 43
>3v3e_B Nuclear receptor subfamily 4 group A member 1; orphan nuclear receptor, transcription; 2.06A {Homo sapiens} PDB: 3v3q_A* 2qw4_A 1yje_A
Probab=49.13 E-value=27 Score=33.14 Aligned_cols=57 Identities=19% Similarity=0.380 Sum_probs=42.0
Q ss_pred cCCCceeecCCceecccCCCCccchhhhchhHHHHHHHHHhccCChhHHhHHHHhhhcC
Q 009289 428 AGSGGLLLPDSVEITHLNRPNNKLLDWFFNPIMVLKEQISVLKLTEPEVRYLEKVVLFG 486 (538)
Q Consensus 428 anS~GlllsD~~EiT~~NrPkdr~fDWff~PllviKEQIk~~~L~E~EE~yL~KlvL~~ 486 (538)
.+.+.+++.+|.-++... ....+-| +++++.-+-+++++++++++|=.||+-+||++
T Consensus 108 ~~~~~l~~~~~~~~~~~~-~~~~~~~-~~~~l~~~~~~l~~L~ld~~E~a~LkAivLfs 164 (257)
T 3v3e_B 108 PGEGKLIFCSGLVLHRLQ-CARGFGD-WIDSILAFSRSLHSLLVDVPAFACLSALVLIT 164 (257)
T ss_dssp GGGTEEECTTSBEEEHHH-HHHHHTT-HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHSS
T ss_pred CCCCeeEeCCCccccHHH-HHhhhHH-HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC
Confidence 345668888887766432 1222233 46788888889999999999999999999995
No 44
>1xvp_B Orphan nuclear receptor NR1I3; CAR, RXR, citco, SRC1, DNA binding protein; HET: F15 CID; 2.60A {Homo sapiens} SCOP: a.123.1.1 PDB: 1xv9_B* 1xnx_A* 1xls_E*
Probab=47.81 E-value=43 Score=30.85 Aligned_cols=36 Identities=25% Similarity=0.467 Sum_probs=30.2
Q ss_pred hchhHHHHHHHHHhccCChhHHhHHHHhhhcCCCcc
Q 009289 455 FFNPIMVLKEQISVLKLTEPEVRYLEKVVLFGSTTE 490 (538)
Q Consensus 455 ff~PllviKEQIk~~~L~E~EE~yL~KlvL~~~d~~ 490 (538)
+.+.+.-+-.+++.++++++|=.||+-++|++.|..
T Consensus 136 ~~~~i~~~~~~l~~L~ld~~E~~lLkAivL~~pd~~ 171 (246)
T 1xvp_B 136 FLELLFHFHGTLRKLQLQEPEYVLLAAMALFSPDRP 171 (246)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHSCSSST
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCC
Confidence 445666677889999999999999999999987653
No 45
>3l0l_A Nuclear receptor ROR-gamma; nuclear receptor, rorgamma, alternative splicing, DNA-bindin binding, nucleus, receptor, zinc-finger, acetylation, activator; HET: HC3; 1.74A {Homo sapiens} SCOP: a.123.1.0 PDB: 3b0w_A* 3kyt_A* 3l0j_A*
Probab=45.40 E-value=54 Score=30.57 Aligned_cols=36 Identities=19% Similarity=0.391 Sum_probs=31.6
Q ss_pred hchhHHHHHHHHHhccCChhHHhHHHHhhhcCCCcc
Q 009289 455 FFNPIMVLKEQISVLKLTEPEVRYLEKVVLFGSTTE 490 (538)
Q Consensus 455 ff~PllviKEQIk~~~L~E~EE~yL~KlvL~~~d~~ 490 (538)
+.+++.-+-+.++.++++++|=.||+-++|++.|..
T Consensus 137 ~~~~l~~~~~~l~~L~ld~~E~~lLkAivLfnpd~~ 172 (248)
T 3l0l_A 137 LISSIFDFSHSLSALHFSEDEIALYTALVLINAHRP 172 (248)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHSCTTCT
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC
Confidence 467787888999999999999999999999987753
No 46
>3vi8_A Peroxisome proliferator-activated receptor alpha; nuclear receptor, protein-ligand complex, PPAR, transcriptio; HET: 13M; 1.75A {Homo sapiens} PDB: 2znn_A* 3et1_A* 3kdu_A* 3kdt_A* 2rew_A* 1i7g_A* 3g8i_A* 1kkq_A* 1k7l_A* 3sp6_A* 2npa_A* 2p54_A* 3fei_A* 3tkm_A* 2znq_A* 2znp_A* 3sp9_A* 3gwx_A* 3dy6_A* 1gwx_A* ...
Probab=44.21 E-value=81 Score=30.13 Aligned_cols=64 Identities=9% Similarity=0.148 Sum_probs=41.0
Q ss_pred cCCCceeecCCceecccCC--CCccchhhhchhHHHHHHHHHhccCChhHHhHHHHhhhcCCCccc
Q 009289 428 AGSGGLLLPDSVEITHLNR--PNNKLLDWFFNPIMVLKEQISVLKLTEPEVRYLEKVVLFGSTTER 491 (538)
Q Consensus 428 anS~GlllsD~~EiT~~Nr--Pkdr~fDWff~PllviKEQIk~~~L~E~EE~yL~KlvL~~~d~~r 491 (538)
.+.++..+..+......+. -....+.=+.+++.-+=.+++.++++++|=.||+-+||++.|...
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~ld~~E~alLkAivLf~pd~~g 195 (273)
T 3vi8_A 130 MNKDGMLVAYGNGFITREFLKSLRKPFCDIMEPKFDFAMKFNALELDDSDISLFVAAIICCGDRPG 195 (273)
T ss_dssp EETTEEEETTTTEEEEHHHHHHSCTTTHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHSCTTCTT
T ss_pred hcCCCCeeeeCCCccchHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC
Confidence 4455555555543322211 111112223567777778999999999999999999999876543
No 47
>3p0u_A Nuclear receptor subfamily 2 group C member 2; ligand binding domain, orphan nuclear receptor, testicular R 4, signaling protein; 3.00A {Homo sapiens}
Probab=43.23 E-value=1.1e+02 Score=28.53 Aligned_cols=73 Identities=12% Similarity=0.181 Sum_probs=41.3
Q ss_pred HHHHHHHhhhcCCCceeecCCceec-ccCC---CC---ccchhhhchhHHHHHHHHHhccCChhHHhHHHHhhhcCCCcc
Q 009289 418 FLQTLLYSIKAGSGGLLLPDSVEIT-HLNR---PN---NKLLDWFFNPIMVLKEQISVLKLTEPEVRYLEKVVLFGSTTE 490 (538)
Q Consensus 418 lL~~LL~SaKanS~GlllsD~~EiT-~~Nr---Pk---dr~fDWff~PllviKEQIk~~~L~E~EE~yL~KlvL~~~d~~ 490 (538)
+|..--+|.+.+...++..++..+. ..++ +. ..+.|+. ..+.-+-++++.++++++|=.||+-++|++.|..
T Consensus 81 ~L~~a~~s~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~l~~~~~~l~~L~ld~~E~~lLkAivL~~pd~~ 159 (249)
T 3p0u_A 81 TLGLAQCAQVMSLSTILAAIVNHLQNSIQEDKLSGDRIKQVMEHI-WKLQEFCNSMAKLDIDGYEYAYLKAIVLFSPDHP 159 (249)
T ss_dssp HHHHHHTTTSCCCCCCCCC-CC---CC---------CCCCHHHHH-HHHHHHHHHHHHTTCCHHHHHHHHHHHHTCSCST
T ss_pred HHHHHHHcccCCcchhhcccccccccccccccchhhhhhhHHHHH-HHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCCCC
Confidence 3444445655666666665554432 1111 11 1223322 2233456789999999999999999999998754
Q ss_pred c
Q 009289 491 R 491 (538)
Q Consensus 491 r 491 (538)
.
T Consensus 160 g 160 (249)
T 3p0u_A 160 G 160 (249)
T ss_dssp T
T ss_pred C
Confidence 3
No 48
>1n83_A Nuclear receptor ROR-alpha; three-layered alpha helical sandwich, transcription regulation, nuclear protein, DNA binding, lipid binding protein; HET: CLR; 1.63A {Homo sapiens} SCOP: a.123.1.1 PDB: 1s0x_A*
Probab=42.63 E-value=81 Score=29.89 Aligned_cols=35 Identities=20% Similarity=0.413 Sum_probs=30.4
Q ss_pred hchhHHHHHHHHHhccCChhHHhHHHHhhhcCCCc
Q 009289 455 FFNPIMVLKEQISVLKLTEPEVRYLEKVVLFGSTT 489 (538)
Q Consensus 455 ff~PllviKEQIk~~~L~E~EE~yL~KlvL~~~d~ 489 (538)
+.+.+.-+-.+++.++++++|=.||+-++|++.|.
T Consensus 146 ~~~~i~~~~~~l~~L~ld~~E~~lLkAivLfnpd~ 180 (270)
T 1n83_A 146 FISFVFEFGKSLCSMHLTEDEIALFSAFVLMSADR 180 (270)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHSCTTS
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCC
Confidence 45667777789999999999999999999998774
No 49
>2hc4_A Vitamin D receptor; alpha helical sandwich, gene regulation; HET: VDX; 2.20A {Danio rerio} PDB: 2hbh_A* 2hcd_A* 3dr1_A* 3o1d_A* 3o1e_A*
Probab=40.28 E-value=59 Score=31.48 Aligned_cols=36 Identities=22% Similarity=0.384 Sum_probs=31.1
Q ss_pred hchhHHHHHHHHHhccCChhHHhHHHHhhhcCCCcc
Q 009289 455 FFNPIMVLKEQISVLKLTEPEVRYLEKVVLFGSTTE 490 (538)
Q Consensus 455 ff~PllviKEQIk~~~L~E~EE~yL~KlvL~~~d~~ 490 (538)
+.+++.-+-.+++.++++++|=.||+-++|++.|..
T Consensus 186 ~~~~l~~~~~~l~~L~ld~~E~alLkAIvLfnpd~~ 221 (302)
T 2hc4_A 186 LLEPLVKFQVGLKKLKLHEEEHVLLMAICLLSPDRP 221 (302)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSCST
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Confidence 456777777899999999999999999999987753
No 50
>1osh_A BIle acid receptor; nuclear receptor, ligand binding domain, transcription; HET: FEX; 1.80A {Homo sapiens} SCOP: a.123.1.1 PDB: 3l1b_A* 3bej_A* 3fli_A* 3hc5_A* 3rvf_A* 3dct_A* 3dcu_A* 3ruu_A* 3rut_A* 3olf_A* 3okh_A* 3fxv_A* 3oki_A* 3omk_A* 3omm_A* 3oof_A* 3ook_A* 3hc6_A* 3p89_A* 3p88_A* ...
Probab=40.05 E-value=68 Score=29.16 Aligned_cols=35 Identities=23% Similarity=0.497 Sum_probs=29.8
Q ss_pred hchhHHHHHHHHHhccCChhHHhHHHHhhhcCCCc
Q 009289 455 FFNPIMVLKEQISVLKLTEPEVRYLEKVVLFGSTT 489 (538)
Q Consensus 455 ff~PllviKEQIk~~~L~E~EE~yL~KlvL~~~d~ 489 (538)
+.+.+.-+-.+++.++++++|=.||+-++|++.|.
T Consensus 121 ~~~~i~~~~~~l~~L~ld~~E~~lLkaivL~~pd~ 155 (232)
T 1osh_A 121 YITPMFSFYKSIGELKMTQEEYALLTAIVILSPDR 155 (232)
T ss_dssp THHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCTTC
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCC
Confidence 34566667789999999999999999999998764
No 51
>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}
Probab=38.73 E-value=88 Score=24.26 Aligned_cols=61 Identities=10% Similarity=0.143 Sum_probs=41.5
Q ss_pred hhhhhhHHHHHHHHHHHhhhhhhhhccCCCChhhHHHHHHhcCCCCcceEeeccchHHHHHHHHHhhhcCCCcee
Q 009289 360 IQEVKMVQIWVNMMRSCETRGRELLDADVITPADLKDWLKAKCVNEEAIVGFGLPCYSFLQTLLYSIKAGSGGLL 434 (538)
Q Consensus 360 iqe~k~vqiwd~lfk~ce~~G~~Ll~~gvIt~~Diee~~~~k~~~~~k~i~vgLPAyslL~~LL~SaKanS~Gll 434 (538)
+.+-...+-+..+|+.+..+| .|.|+.+|+..+++.-+.+ +.-.-++.+++.+-.|.+|-|
T Consensus 22 ~~~~~~~~~l~~~F~~~D~d~-----~G~I~~~El~~~l~~~g~~---------~~~~e~~~l~~~~D~d~dG~I 82 (94)
T 2kz2_A 22 MKDTDSEEEIREAFRVEDKDG-----NGYISAAELRHVMTNLGEK---------LTDEEVDEMIREADIDGDGQV 82 (94)
T ss_dssp HCCCSCHHHHHHHHHHHCTTC-----CSCBCHHHHHHHHHHHTCC---------CCHHHHHHHHHHHCTTCSSSB
T ss_pred hcCCCHHHHHHHHHHHHCCCC-----cCcCCHHHHHHHHHHhCCC---------CCHHHHHHHHHHhCCCCCCcE
Confidence 333445556678888887665 6999999999999875431 123456778887776766643
No 52
>3dzy_D Peroxisome proliferator-activated receptor gamma; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_D* 3e00_D* 2env_A
Probab=38.60 E-value=72 Score=32.43 Aligned_cols=62 Identities=15% Similarity=0.337 Sum_probs=42.3
Q ss_pred cCCCceeecCCcee-ccc--CCCCccchhhhchhHHHHHHHHHhccCChhHHhHHHHhhhcCCCcc
Q 009289 428 AGSGGLLLPDSVEI-THL--NRPNNKLLDWFFNPIMVLKEQISVLKLTEPEVRYLEKVVLFGSTTE 490 (538)
Q Consensus 428 anS~GlllsD~~Ei-T~~--NrPkdr~fDWff~PllviKEQIk~~~L~E~EE~yL~KlvL~~~d~~ 490 (538)
.+.+|.++.+|..+ +.. ...+..+-| +.+++.-+-+++++++++++|=.||+-+||++.|..
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~i~~f~~~l~~L~ld~~E~alLkAivLf~pD~~ 340 (419)
T 3dzy_D 276 MNKDGVLISEGQGFMTREFLKSLRKPFGD-FMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRP 340 (419)
T ss_dssp BCSSEEEEGGGTEEEEHHHHHSSSGGGSG-GGHHHHHHHHHHHHTCCCHHHHHHHHHHHHSCTTST
T ss_pred hcCCCceeecCcccccHHHHHhhhhhHHH-HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC
Confidence 35567777666432 211 111122333 457788888999999999999999999999987653
No 53
>1nrl_A Orphan nuclear receptor PXR; PXR, xenobiotic, SRC-1, ligand binding domain, transcription; HET: SRL; 2.00A {Homo sapiens} SCOP: a.123.1.1 PDB: 1ilh_A* 1ilg_A* 1m13_A* 2qnv_A* 3r8d_A* 3ctb_A 3ctc_A 3hvl_A* 1skx_A* 2o9i_A*
Probab=35.56 E-value=1.8e+02 Score=28.51 Aligned_cols=35 Identities=20% Similarity=0.447 Sum_probs=30.7
Q ss_pred hchhHHHHHHHHHhccCChhHHhHHHHhhhcCCCc
Q 009289 455 FFNPIMVLKEQISVLKLTEPEVRYLEKVVLFGSTT 489 (538)
Q Consensus 455 ff~PllviKEQIk~~~L~E~EE~yL~KlvL~~~d~ 489 (538)
+.+++.-+-.+++.++++++|=.||+-++|++.|.
T Consensus 201 ~~~~i~~~~~~l~~L~ld~~E~alLkAIvLfnpd~ 235 (316)
T 1nrl_A 201 LLEPMLKFHYMLKKLQLHEEEYVLMQAISLFSPDR 235 (316)
T ss_dssp TTSHHHHHHHHHHHTCCCHHHHHHHHHHHHTCTTS
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCC
Confidence 45677777889999999999999999999998774
No 54
>2oqj_C Peptide 2G12.1 (ACPPSHVLDMRSGTCLAAEGK); immunoglobulin fold, immune system; 2.80A {Homo sapiens}
Probab=35.26 E-value=8.7 Score=26.14 Aligned_cols=14 Identities=36% Similarity=0.465 Sum_probs=11.5
Q ss_pred cccccccCCCcCCC
Q 009289 296 NDWLYLREGTILPK 309 (538)
Q Consensus 296 ND~LyLrEGScfPR 309 (538)
..+|+||.|+|+-.
T Consensus 5 shvldmrsgtclaa 18 (26)
T 2oqj_C 5 SHVLDMRSGTCLAA 18 (26)
T ss_pred hheeeccCCceEee
Confidence 35899999999864
No 55
>3arc_I Photosystem II reaction center protein I; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_I* 2axt_I* 3bz1_I* 3bz2_I* 3kzi_I* 3prq_I* 3prr_I* 3a0b_I* 3a0h_I*
Probab=22.09 E-value=49 Score=24.59 Aligned_cols=16 Identities=38% Similarity=0.463 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHhhhh
Q 009289 15 YVGFAFCLAFFLGALK 30 (538)
Q Consensus 15 y~~f~F~~l~~LG~iK 30 (538)
-|+.||++||+.|.+-
T Consensus 10 ~vV~ffvsLFiFGfLs 25 (38)
T 3arc_I 10 IVVTFFVLLFVFGFLS 25 (38)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHccccC
Confidence 4788999999999863
No 56
>3vii_A Beta-glucosidase; cellulases, glycosyl hydrolase, hydrolase; HET: BTB; 0.97A {Neotermes koshunensis} PDB: 3ahz_A* 3vif_A* 3vih_A 3vig_A* 3vim_A* 3ai0_A* 3vin_A* 3vio_A* 3vip_A* 3vij_A* 3vik_A* 3vil_A*
Probab=21.57 E-value=65 Score=34.03 Aligned_cols=53 Identities=28% Similarity=0.419 Sum_probs=35.6
Q ss_pred CCCceeecCCceecccCCCCcc---------chhhhchhHH--------HHHHHHHh------------ccCChhHHhHH
Q 009289 429 GSGGLLLPDSVEITHLNRPNNK---------LLDWFFNPIM--------VLKEQISV------------LKLTEPEVRYL 479 (538)
Q Consensus 429 nS~GlllsD~~EiT~~NrPkdr---------~fDWff~Pll--------viKEQIk~------------~~L~E~EE~yL 479 (538)
+.-|+.+.-..-....+.|+|. ...||.+|++ .||+.+++ .++|++|.+.+
T Consensus 227 ~~IGi~l~~~~~~P~~~~p~D~~Aa~~~~~~~~~~f~dpi~~~~G~YP~~~~~~~~~~~~~~g~~~~~~p~~~~~d~~~i 306 (487)
T 3vii_A 227 GKVGISLNINWCEPATNSAEDRASCENYQQFNLGLYAHPIFTEEGDYPAVLKDRVSRNSADEGYTDSRLPQFTAEEVEYI 306 (487)
T ss_dssp CEEEEEEECCEEEESSSCHHHHHHHHHHHHHHTHHHHHHHHSSSCSSCHHHHHHHHHHHHHTTCSSCSSCCCCHHHHHHH
T ss_pred CeEEEEecCCccCCCCcCHHHHHHHHHHHHHhhhhhhhhHhccCCCCCHHHHHHHHhhccccccccccCCCCCHHHHHHh
Confidence 3456666655444444677763 2359999999 57887763 46888888888
Q ss_pred HH
Q 009289 480 EK 481 (538)
Q Consensus 480 ~K 481 (538)
+.
T Consensus 307 ~~ 308 (487)
T 3vii_A 307 RG 308 (487)
T ss_dssp TT
T ss_pred cC
Confidence 64
No 57
>1srz_A Gamma-aminobutyric acid type B receptor, subunit 1; GABA(B) receptor, CIS-trans isomerization, CCP module, sushi domain; NMR {Rattus norvegicus} SCOP: g.18.1.1 PDB: 1ss2_A
Probab=21.35 E-value=42 Score=25.29 Aligned_cols=20 Identities=30% Similarity=0.632 Sum_probs=16.4
Q ss_pred ceEEEEeeCccceeeceeEEe
Q 009289 126 KLFHCVVDGTWGTIKGSCTMV 146 (538)
Q Consensus 126 kf~HCf~DGTwsTI~GSCTVV 146 (538)
+..+|- ||+||.-.-.|..|
T Consensus 49 ~~~~C~-~g~Ws~~~P~C~~i 68 (68)
T 1srz_A 49 SRSVCS-QGQWSTPKPHCQVN 68 (68)
T ss_dssp CEEEEE-TTEESSCCCCEEEC
T ss_pred CcCEEC-CCEEeCCCCEeeEC
Confidence 568998 99999887888754
No 58
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=20.03 E-value=1.4e+02 Score=22.72 Aligned_cols=53 Identities=8% Similarity=0.189 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHhhhhhhhhccCCCChhhHHHHHHhcCCCCcceEeeccchHHHHHHHHHhhhcCCCcee
Q 009289 366 VQIWVNMMRSCETRGRELLDADVITPADLKDWLKAKCVNEEAIVGFGLPCYSFLQTLLYSIKAGSGGLL 434 (538)
Q Consensus 366 vqiwd~lfk~ce~~G~~Ll~~gvIt~~Diee~~~~k~~~~~k~i~vgLPAyslL~~LL~SaKanS~Gll 434 (538)
.+-+..+|+.+..+| .|.|+.+|+..+++.-+- + -.-++.++..+-.|.+|-|
T Consensus 26 ~~~l~~~F~~~D~d~-----~G~I~~~El~~~l~~~g~----------~-~~~~~~~~~~~D~d~dg~I 78 (91)
T 2pmy_A 26 LARLRSVFAACDANR-----SGRLEREEFRALCTELRV----------R-PADAEAVFQRLDADRDGAI 78 (91)
T ss_dssp HHHHHHHHHHHCTTC-----SSSEEHHHHHHHHHHTTC----------C-HHHHHHHHHHHCTTCSSEE
T ss_pred HHHHHHHHHHHCCCC-----CCCCcHHHHHHHHHHcCc----------C-HHHHHHHHHHhCCCCCCCE
Confidence 345677888888776 789999999999876531 1 2346778887777766654
Done!