Your job contains 1 sequence.
>009293
MGKLVASVSNSLHSPGSFLEKIETYFFGNIPLSFKSNRTAPSILLFMKKKNSVSVLTNCT
FKRNEECIVDFKNRKGWIHFVGIGGSGLSALAKLALKQGFEVSGSDLVWSSYMEGLLEAG
ANLHIGHSVSNIQGNDGSRFPNAVVASSAIPQDNVEILHAKSVGVPIYKRDYWLAKLTEK
YNLIAVSGSHGKSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADE
YDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARS
LLDQIKQDTGLKYSGGVVSNQSSDLWGQGHDYKIITYGFSSFNDWYAESVCPNVQGGSDY
ILCERGRPLAQISLQIPGVHNVLNSLAVIATVLTLIGDKRQSHESIACLKLPLSKFMGVS
RRFDLIGTIYGCHIYDDFAHHPTEVRAVLQAARQRFPNKALIAVFQPHTYSRLVVLKDDF
ANALSEADQVVVSAVLVFWLIIFAVSSFWLIMAINSVICIVRSMLPEKQMIGISMERI
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 009293
(538 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TIGR_CMR|CHY_2068 - symbol:CHY_2068 "UDP-N-acetylmuramate... 362 3.3e-55 2
TIGR_CMR|GSU_3068 - symbol:GSU_3068 "UDP-N-acetylmuramate... 333 1.2e-52 2
UNIPROTKB|P17952 - symbol:murC species:83333 "Escherichia... 333 1.9e-48 2
TIGR_CMR|SO_4218 - symbol:SO_4218 "UDP-N-acetylmuramate--... 333 5.6e-48 2
TIGR_CMR|CPS_4464 - symbol:CPS_4464 "UDP-N-acetylmuramate... 313 8.9e-48 2
TIGR_CMR|SPO_1196 - symbol:SPO_1196 "UDP-N-acetylmuramate... 300 3.8e-47 2
UNIPROTKB|Q9KPG8 - symbol:murC "UDP-N-acetylmuramate--L-a... 305 6.5e-47 2
TIGR_CMR|VC_2400 - symbol:VC_2400 "UDP-N-acetylmuramate--... 305 6.5e-47 2
TIGR_CMR|CBU_0136 - symbol:CBU_0136 "UDP-N-acetylmuramate... 287 1.7e-44 2
UNIPROTKB|P65472 - symbol:murC "UDP-N-acetylmuramate--L-a... 321 3.0e-42 2
TIGR_CMR|BA_4938 - symbol:BA_4938 "UDP-N-acetylmuramate--... 250 1.6e-40 2
TIGR_CMR|CJE_1198 - symbol:CJE_1198 "UDP-N-acetylmuramate... 296 1.3e-37 2
UNIPROTKB|Q9KP37 - symbol:VC_2542 "UDP-N-acetylmuramate:L... 208 7.3e-30 2
TIGR_CMR|VC_2542 - symbol:VC_2542 "UDP-N-acetylmuramate:L... 208 7.3e-30 2
TIGR_CMR|SO_3805 - symbol:SO_3805 "UDP-N-acetylmuramate:L... 250 8.9e-29 2
UNIPROTKB|P37773 - symbol:mpl species:83333 "Escherichia ... 211 4.7e-27 2
TIGR_CMR|CPS_0405 - symbol:CPS_0405 "UDP-N-acetylmuramate... 237 5.4e-17 1
UNIPROTKB|Q97RU8 - symbol:murD "UDP-N-acetylmuramoylalani... 117 6.4e-08 3
TIGR_CMR|GSU_3071 - symbol:GSU_3071 "UDP-N-acetylmuramoyl... 114 9.0e-07 2
TIGR_CMR|CHY_2074 - symbol:CHY_2074 "UDP-N-acetylmuramoyl... 110 1.7e-06 3
TIGR_CMR|BA_4053 - symbol:BA_4053 "UDP-N-acetylmuramoylal... 95 1.3e-05 2
TIGR_CMR|CBU_0124 - symbol:CBU_0124 "UDP-N-acetylmuramoyl... 100 0.00024 2
>TIGR_CMR|CHY_2068 [details] [associations]
symbol:CHY_2068 "UDP-N-acetylmuramate--alanine ligase"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0008763 "UDP-N-acetylmuramate-L-alanine ligase activity"
evidence=ISS] [GO:0009252 "peptidoglycan biosynthetic process"
evidence=ISS] HAMAP:MF_00046 InterPro:IPR000713 InterPro:IPR004101
InterPro:IPR005758 InterPro:IPR013221 Pfam:PF01225 Pfam:PF02875
Pfam:PF08245 UniPathway:UPA00219 InterPro:IPR016040
InterPro:IPR001357 GO:GO:0005524 GO:GO:0005737 GO:GO:0051301
GO:GO:0008360 Gene3D:3.40.50.720 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0007049 GO:GO:0009252 SMART:SM00292
Gene3D:3.40.1190.10 Gene3D:3.90.190.20 SUPFAM:SSF53244
SUPFAM:SSF53623 eggNOG:COG0773 KO:K01924 GO:GO:0008763
PANTHER:PTHR23135:SF5 TIGRFAMs:TIGR01082 HOGENOM:HOG000256031
OMA:YQPHRYS RefSeq:YP_360887.1 ProteinModelPortal:Q3AAE7
STRING:Q3AAE7 GeneID:3727737 KEGG:chy:CHY_2068 PATRIC:21277217
BioCyc:CHYD246194:GJCN-2067-MONOMER Uniprot:Q3AAE7
Length = 464
Score = 362 (132.5 bits), Expect = 3.3e-55, Sum P(2) = 3.3e-55
Identities = 85/230 (36%), Positives = 126/230 (54%)
Query: 78 IHFVGIXXXXXXXXXXXXXXQGFEVSGSDLVWSSYMEGLLEAGANLHIGHSVSNIQGNDG 137
+HF+ I +G+ VSGSDL + + L G + IGH N+ +D
Sbjct: 18 VHFIAIGGIGMSGLARILQSKGYRVSGSDLKETELTKKLRAEGITVFIGHREENL-ASDV 76
Query: 138 SRFPNAVVASSAIPQDNVEILHAKSVGVPIYKRDYWLAKLTEKYNLIAVSGSHGKSTTAS 197
S VV S+A+ QDN E+L AK +G+P+ R LA+L ++ IAV+G+HGK+TT+S
Sbjct: 77 S----LVVVSTAVSQDNPELLKAKRLGIPVMHRGELLARLMQEKKGIAVAGTHGKTTTSS 132
Query: 198 MLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTN 257
M+AYVL+ G D VG + + G G+ V EADE DG FL L P AV+TN
Sbjct: 133 MIAYVLEKEGFDPVIAVGGEIVDLGYNAKA-GQGEYMVAEADESDGSFLKLLPYAAVITN 191
Query: 258 LDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQ 307
++ +H+D ++ + +K F++F IR G V C D+ R +L K+
Sbjct: 192 IEADHLDYYQSFEEIKKAFKKFADNIRPEGFGVFCWDNLQVREMLKGYKK 241
Score = 225 (84.3 bits), Expect = 3.3e-55, Sum P(2) = 3.3e-55
Identities = 57/168 (33%), Positives = 90/168 (53%)
Query: 328 QGHDYKIITYGFSSFNDWYAESVCPNVQGGSDYILCERGRPLAQISLQIPGVHNVLNSLA 387
+G+ + TYGFS +D+ Q + + ++ L++PG HN+LN+ A
Sbjct: 237 KGYKKRKFTYGFSPGSDFMLRDYREE-QNQLVANIYYKNTLEGELRLKVPGKHNILNAAA 295
Query: 388 VIATVLTLIGDKRQSHESIACLKLPLSKFMGVSRRFDLIGTIYGCHIYDDFAHHPTEVRA 447
A VL IG S + L +F G RRF ++G G I DD+AHHPTEV A
Sbjct: 296 ATA-VLRNIG------LSFKAISERLLEFNGAKRRFQILGERNGALIVDDYAHHPTEVEA 348
Query: 448 VLQAARQRFPNKALIAVFQPHTYSRLVVLKDDFANALSEADQVVVSAV 495
L+AA+ + ++ ++ VFQPH Y+R +FA L +A++VV++ +
Sbjct: 349 TLRAAKL-YKDRDVLVVFQPHRYTRTHFFYKEFARVLVDAEKVVLTGI 395
>TIGR_CMR|GSU_3068 [details] [associations]
symbol:GSU_3068 "UDP-N-acetylmuramate--alanine ligase"
species:243231 "Geobacter sulfurreducens PCA" [GO:0008763
"UDP-N-acetylmuramate-L-alanine ligase activity" evidence=ISS]
[GO:0009252 "peptidoglycan biosynthetic process" evidence=ISS]
HAMAP:MF_00046 InterPro:IPR000713 InterPro:IPR004101
InterPro:IPR005758 InterPro:IPR013221 Pfam:PF01225 Pfam:PF02875
Pfam:PF08245 UniPathway:UPA00219 InterPro:IPR016040 GO:GO:0005524
GO:GO:0005737 GO:GO:0051301 GO:GO:0008360 Gene3D:3.40.50.720
GO:GO:0007049 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0009252
Gene3D:3.40.1190.10 Gene3D:3.90.190.20 SUPFAM:SSF53244
SUPFAM:SSF53623 eggNOG:COG0773 KO:K01924 ProtClustDB:PRK00421
GO:GO:0008763 PANTHER:PTHR23135:SF5 TIGRFAMs:TIGR01082
HOGENOM:HOG000256031 OMA:YQPHRYS RefSeq:NP_954110.1
ProteinModelPortal:P61679 GeneID:2686325 KEGG:gsu:GSU3068
PATRIC:22028987 BioCyc:GSUL243231:GH27-3017-MONOMER Uniprot:P61679
Length = 462
Score = 333 (122.3 bits), Expect = 1.2e-52, Sum P(2) = 1.2e-52
Identities = 84/232 (36%), Positives = 123/232 (53%)
Query: 78 IHFVGIXXXXXXXXXXXXXXQGFEVSGSDLVWSSYMEGLLEAGANLHIGHSVSNIQGNDG 137
IHFVGI G++VSGSDL S + L G + GH N+ D
Sbjct: 8 IHFVGIGGIGMSGIAEVLLNLGYKVSGSDLKQSDTTDRLASLGGEIRFGHGRENVADVD- 66
Query: 138 SRFPNAVVASSAIPQDNVEILHAKSVGVPIYKRDYWLAKLTE-KYNLIAVSGSHGKSTTA 196
VV S+A+ DN E++ AK +P+ R LA+L KY IA++G+HGK+TT
Sbjct: 67 -----VVVTSTAVRDDNPEVVEAKRRMIPVIPRAEMLAELMRMKYG-IAIAGTHGKTTTT 120
Query: 197 SMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVT 256
SM+A VL G D T ++G + + G G+ V EADE DG FL LSP++AVVT
Sbjct: 121 SMVATVLTHGGIDPTIVIGGKLNTLGTNAKL-GQGQFLVAEADESDGSFLKLSPTIAVVT 179
Query: 257 NLDWEHVDIFEDE-DAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQ 307
N+D +H+D + + +K F F+ +I G V+C + + +L ++K+
Sbjct: 180 NIDADHLDFYTGGIEQIKDTFVDFINKIPFYGLAVLCLEDRNIAEILPRVKK 231
Score = 255 (94.8 bits), Expect = 1.2e-52, Sum P(2) = 1.2e-52
Identities = 57/164 (34%), Positives = 88/164 (53%)
Query: 333 KIITYGFSSFNDWYAESVCPNVQGGS-DYILCERGRPLAQISLQIPGVHNVLNSLAVIAT 391
+ +TYG SS D A + ++GG+ ++ +G + ++S +PG HNVLN+LA IA
Sbjct: 232 RFVTYGLSSQADIRATHI--RLEGGTTSFVAHYKGYRMGEVSFSMPGAHNVLNALACIAV 289
Query: 392 VLTLIGDKRQSHESIACLKLPLSKFMGVSRRFDLIGTIYGCHIYDDFAHHPTEVRAVLQA 451
+ L Q E A F GV RRF + G + G + DD+ HHP E+RA L A
Sbjct: 290 AMELDVPFSQIQEGFAT-------FGGVGRRFQVKGEVNGITVVDDYGHHPAEIRATLAA 342
Query: 452 ARQRFPNKALIAVFQPHTYSRLVVLKDDFANALSEADQVVVSAV 495
+ +P + L+ FQPH +SR L +F +AD +V++ +
Sbjct: 343 GKSGWPERRLVVAFQPHRFSRTRELFAEFVTCFYDADVLVLTDI 386
>UNIPROTKB|P17952 [details] [associations]
symbol:murC species:83333 "Escherichia coli K-12"
[GO:0008763 "UDP-N-acetylmuramate-L-alanine ligase activity"
evidence=IEA;IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0000287 "magnesium ion binding" evidence=IDA] [GO:0005524 "ATP
binding" evidence=IEA;IDA] [GO:0009058 "biosynthetic process"
evidence=IEA] [GO:0051301 "cell division" evidence=IEA] [GO:0008360
"regulation of cell shape" evidence=IEA] [GO:0007049 "cell cycle"
evidence=IEA] [GO:0071555 "cell wall organization" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0009252 "peptidoglycan
biosynthetic process" evidence=IEA] HAMAP:MF_00046
InterPro:IPR000713 InterPro:IPR004101 InterPro:IPR005758
InterPro:IPR013221 Pfam:PF01225 Pfam:PF02875 Pfam:PF08245
UniPathway:UPA00219 InterPro:IPR016040 GO:GO:0005524 GO:GO:0005737
GO:GO:0051301 GO:GO:0008360 Gene3D:3.40.50.720 GO:GO:0000287
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0007049 GO:GO:0009252
Gene3D:3.40.1190.10 Gene3D:3.90.190.20 SUPFAM:SSF53244
SUPFAM:SSF53623 EMBL:X55034 EMBL:X52644 eggNOG:COG0773 KO:K01924
ProtClustDB:PRK00421 GO:GO:0008763 PANTHER:PTHR23135:SF5
TIGRFAMs:TIGR01082 HOGENOM:HOG000256031 OMA:YQPHRYS EMBL:U67892
PIR:JQ0545 RefSeq:NP_414633.1 RefSeq:YP_488396.1 PDB:1CC9 PDB:2F00
PDBsum:1CC9 PDBsum:2F00 ProteinModelPortal:P17952 SMR:P17952
DIP:DIP-10278N IntAct:P17952 MINT:MINT-1222662 PRIDE:P17952
EnsemblBacteria:EBESCT00000002016 EnsemblBacteria:EBESCT00000002017
EnsemblBacteria:EBESCT00000002018 EnsemblBacteria:EBESCT00000002019
EnsemblBacteria:EBESCT00000015469 GeneID:12932863 GeneID:946153
KEGG:ecj:Y75_p0090 KEGG:eco:b0091 PATRIC:32115287 EchoBASE:EB0614
EcoGene:EG10619 BioCyc:EcoCyc:UDP-NACMUR-ALA-LIG-MONOMER
BioCyc:ECOL316407:JW0089-MONOMER
BioCyc:MetaCyc:UDP-NACMUR-ALA-LIG-MONOMER BindingDB:P17952
ChEMBL:CHEMBL5168 EvolutionaryTrace:P17952 Genevestigator:P17952
Uniprot:P17952
Length = 491
Score = 333 (122.3 bits), Expect = 1.9e-48, Sum P(2) = 1.9e-48
Identities = 88/267 (32%), Positives = 132/267 (49%)
Query: 68 IVDFKNRKGWIHFVGIXXXXXXXXXXXXXXQGFEVSGSDLVWSSYMEGLLEAGANLHIGH 127
IV R IHFVGI +G+++SGSDL + + L+ GA ++ H
Sbjct: 12 IVPEMRRVRHIHFVGIGGAGMGGIAEVLANEGYQISGSDLAPNPVTQQLMNLGATIYFNH 71
Query: 128 SVSNIQGNDGSRFPNAVVASSAIPQDNVEILHAKSVGVPIYKRDYWLAKLTEKYNLIAVS 187
N++ D S VV SSAI DN EI+ A +P+ +R LA+L + IA++
Sbjct: 72 RPENVR--DAS----VVVVSSAISADNPEIVAAHEARIPVIRRAEMLAELMRFRHGIAIA 125
Query: 188 GSHGKSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLG 247
G+HGK+TT +M++ + G D T + G V + G G+ + EADE D FL
Sbjct: 126 GTHGKTTTTAMVSSIYAEAGLDPTFVNGGLV-KAAGVHARLGHGRYLIAEADESDASFLH 184
Query: 248 LSPSVAVVTNLDWEHVDIFE-DEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIK 306
L P VA+VTN++ +H+D ++ D + +K F FL + G V+C D R LL ++
Sbjct: 185 LQPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIRELLPRVG 244
Query: 307 QDT---GLKYSGGVVSNQSSDLWGQGH 330
+ T G V + QGH
Sbjct: 245 RQTTTYGFSEDADVRVEDYQQIGPQGH 271
Score = 226 (84.6 bits), Expect = 1.9e-48, Sum P(2) = 1.9e-48
Identities = 61/169 (36%), Positives = 89/169 (52%)
Query: 336 TYGFSSFNDWYAESVCPNVQGGSDYILCERGRPLAQISLQIPGVHNVLNSLAVIATVLTL 395
TYGFS D E G +L + P+ +++L PG HN LN+ A +A V T
Sbjct: 249 TYGFSEDADVRVEDYQQIGPQGHFTLLRQDKEPM-RVTLNAPGRHNALNAAAAVA-VAT- 305
Query: 396 IGDKRQSHESIACLKLPLSKFMGVSRRFDLIGT-----IYG----CHIYDDFAHHPTEVR 446
+ + A L+ L F G RRFD +G + G + DD+ HHPTEV
Sbjct: 306 ----EEGIDDEAILRA-LESFQGTGRRFDFLGEFPLEPVNGKSGTAMLVDDYGHHPTEVD 360
Query: 447 AVLQAARQRFPNKALIAVFQPHTYSRLVVLKDDFANALSEADQVVVSAV 495
A ++AAR +P+K L+ +FQPH ++R L DDFAN L++ D +++ V
Sbjct: 361 ATIKAARAGWPDKNLVMLFQPHRFTRTRDLYDDFANVLTQVDTLLMLEV 409
>TIGR_CMR|SO_4218 [details] [associations]
symbol:SO_4218 "UDP-N-acetylmuramate--alanine ligase"
species:211586 "Shewanella oneidensis MR-1" [GO:0008763
"UDP-N-acetylmuramate-L-alanine ligase activity" evidence=ISS]
[GO:0009252 "peptidoglycan biosynthetic process" evidence=ISS]
HAMAP:MF_00046 InterPro:IPR000713 InterPro:IPR004101
InterPro:IPR005758 InterPro:IPR013221 Pfam:PF01225 Pfam:PF02875
Pfam:PF08245 UniPathway:UPA00219 InterPro:IPR016040 GO:GO:0005524
GO:GO:0005737 GO:GO:0051301 GO:GO:0008360 Gene3D:3.40.50.720
GO:GO:0007049 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0009252
Gene3D:3.40.1190.10 Gene3D:3.90.190.20 SUPFAM:SSF53244
SUPFAM:SSF53623 eggNOG:COG0773 KO:K01924 ProtClustDB:PRK00421
GO:GO:0008763 PANTHER:PTHR23135:SF5 TIGRFAMs:TIGR01082
HOGENOM:HOG000256031 OMA:YQPHRYS RefSeq:NP_719746.1
ProteinModelPortal:Q8E9P8 SMR:Q8E9P8 GeneID:1171822
KEGG:son:SO_4218 PATRIC:23528074 Uniprot:Q8E9P8
Length = 488
Score = 333 (122.3 bits), Expect = 5.6e-48, Sum P(2) = 5.6e-48
Identities = 80/231 (34%), Positives = 123/231 (53%)
Query: 78 IHFVGIXXXXXXXXXXXXXXQGFEVSGSDLVWSSYMEGLLEAGANLHIGHSVSNIQGNDG 137
IHFVGI +G+ VSGSD+ ++ + L GA +HIGH N+Q D
Sbjct: 23 IHFVGIGGAGMGGIAEVLVNEGYVVSGSDIAQNAVTDRLCLLGAKIHIGHGADNVQQAD- 81
Query: 138 SRFPNAVVASSAIPQDNVEILHAKSVGVPIYKRDYWLAKLTEKYNLIAVSGSHGKSTTAS 197
VV S+AI N EI+ AK + +PI +R LA+L + +A++G+HGK+TT S
Sbjct: 82 -----VVVVSTAINPQNPEIIAAKELRIPIVRRAEMLAELMRYRHGVAIAGTHGKTTTTS 136
Query: 198 MLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTN 257
++A + G D T ++G + + G + + EADE D FL L P V+VVTN
Sbjct: 137 LIASLYGQAGRDPTFVIGGLLNSAGTNARL-GTSRYLIAEADESDASFLHLQPMVSVVTN 195
Query: 258 LDWEHVDIFE-DEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQ 307
++ +H+D + D + +KS F FL + G V+C D R ++ +I +
Sbjct: 196 IEADHMDTYGGDFEKLKSTFVDFLHNLPFYGVAVVCIDDPVVREIMPRISR 246
Score = 221 (82.9 bits), Expect = 5.6e-48, Sum P(2) = 5.6e-48
Identities = 58/160 (36%), Positives = 89/160 (55%)
Query: 334 IITYGFSSFNDWYAESVCPNVQGGS-DYILCERGRPLAQISLQIPGVHNVLNSLAVIATV 392
I+TYGF D A + + QG + + +G+ + L +PG HNVLN+LA IA
Sbjct: 248 IVTYGFRDDADVQALNF--SQQGHQCRFTVRRKGKEDLDLLLNLPGQHNVLNALAAIA-- 303
Query: 393 LTLIGDKRQSHESIACLKLPLSKFMGVSRRFDLIG---TIYG-CHIYDDFAHHPTEVRAV 448
+ + + +S A ++ L++F G+ RRF +G T G + DD+ HHP+EV A
Sbjct: 304 ---VATEDEIDDS-AIIQA-LAEFQGIGRRFQHLGKFATPKGEVMLVDDYGHHPSEVAAT 358
Query: 449 LQAARQRFPNKALIAVFQPHTYSRLVVLKDDFANALSEAD 488
++AAR +P K L+ +QPH Y+R L +DF LS+ D
Sbjct: 359 IKAARAGWPEKRLVMAYQPHRYTRTRDLYEDFIEVLSQVD 398
>TIGR_CMR|CPS_4464 [details] [associations]
symbol:CPS_4464 "UDP-N-acetylmuramate--alanine ligase"
species:167879 "Colwellia psychrerythraea 34H" [GO:0008763
"UDP-N-acetylmuramate-L-alanine ligase activity" evidence=ISS]
[GO:0009252 "peptidoglycan biosynthetic process" evidence=ISS]
HAMAP:MF_00046 InterPro:IPR000713 InterPro:IPR004101
InterPro:IPR005758 InterPro:IPR013221 Pfam:PF01225 Pfam:PF02875
Pfam:PF08245 UniPathway:UPA00219 InterPro:IPR016040 GO:GO:0005524
GO:GO:0005737 GO:GO:0051301 GO:GO:0008360 Gene3D:3.40.50.720
GO:GO:0007049 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0009252
Gene3D:3.40.1190.10 Gene3D:3.90.190.20 SUPFAM:SSF53244
SUPFAM:SSF53623 eggNOG:COG0773 KO:K01924 GO:GO:0008763
PANTHER:PTHR23135:SF5 TIGRFAMs:TIGR01082 HOGENOM:HOG000256031
OMA:YQPHRYS RefSeq:YP_271112.1 ProteinModelPortal:Q47VR0 SMR:Q47VR0
STRING:Q47VR0 GeneID:3522903 KEGG:cps:CPS_4464 PATRIC:21471761
BioCyc:CPSY167879:GI48-4473-MONOMER Uniprot:Q47VR0
Length = 503
Score = 313 (115.2 bits), Expect = 8.9e-48, Sum P(2) = 8.9e-48
Identities = 81/263 (30%), Positives = 137/263 (52%)
Query: 47 MKKKNSVSVLTNCTFKRNEECIVDFKNRKGWIHFVGIXXXXXXXXXXXXXXQGFEVSGSD 106
M K+ VS +N + + + + K IHFVGI +G+++SGSD
Sbjct: 1 MIKQTHVSNSSNNSTNSTAAQVPEMRRVKR-IHFVGIGGAGMGGIAEVLLNEGYQISGSD 59
Query: 107 LVWSSYMEGLLEAGANLHIGHSVSNIQGNDGSRFPNAVVASSAIPQDNVEILHAKSVGVP 166
+ + ++ L GA + IGH N+ + +V S+AI +N E++ AK + +P
Sbjct: 60 IGENQVVKRLRALGATIVIGHQAENVVQ------ASVIVVSTAINSENPELVKAKELRIP 113
Query: 167 IYKRDYWLAKLTEKYNLIAVSGSHGKSTTASMLAYVLKAMGD-DLTAIVGAHVPQFPDGS 225
+ +R LA+L + IA++G+HGK+TT S++A + A G D T ++G + +
Sbjct: 114 VVRRAEMLAELMRFRHGIAIAGTHGKTTTTSLIASIF-AQGKLDPTFVIGGLLNSAGTNA 172
Query: 226 IFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFE-DEDAVKSIFRRFLKQIR 284
G + V EADE D FL L P V+V+TN+D +H++ ++ D + +K + FL +
Sbjct: 173 RL-GSSRYLVAEADESDASFLHLQPMVSVITNIDADHMETYQGDFEKLKDTYIEFLHNLP 231
Query: 285 VGGHLVICGDSQCARSLLDQIKQ 307
G V+C D+ R LL +I +
Sbjct: 232 FYGLAVVCIDNPVVRELLPRISR 254
Score = 248 (92.4 bits), Expect = 8.9e-48, Sum P(2) = 8.9e-48
Identities = 64/161 (39%), Positives = 92/161 (57%)
Query: 333 KIITYGFSSFNDWYAESVCPNVQGGSDYILCE-RGRPLAQISLQIPGVHNVLNSLAVIAT 391
++ITYGFS D A + N G + E G+ ++S+ +PG HNVLN+LA +A
Sbjct: 255 QVITYGFSKDADVRAVNYQQN--GAVSHFTVEVEGQEPLEMSVNLPGQHNVLNALAGVAV 312
Query: 392 VLTLIGDKRQSHESIACLKLPLSKFMGVSRRFDLI---GTIYGCHIY-DDFAHHPTEVRA 447
D+ + E+I C L ++F G+ RRF+ + T G + DD+ HHP+EV+A
Sbjct: 313 AK----DEGVNDEAI-CKAL--TEFEGIGRRFEKLTDFSTAAGDMVLVDDYGHHPSEVKA 365
Query: 448 VLQAARQRFPNKALIAVFQPHTYSRLVVLKDDFANALSEAD 488
+ A RQ +P+K L+ VFQPH YSR L +DF LSE D
Sbjct: 366 TILAMRQGWPDKRLVMVFQPHRYSRTRDLYEDFVEVLSEVD 406
>TIGR_CMR|SPO_1196 [details] [associations]
symbol:SPO_1196 "UDP-N-acetylmuramate--alanine ligase"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0008763
"UDP-N-acetylmuramate-L-alanine ligase activity" evidence=ISS]
[GO:0009252 "peptidoglycan biosynthetic process" evidence=ISS]
HAMAP:MF_00046 InterPro:IPR000713 InterPro:IPR004101
InterPro:IPR005758 InterPro:IPR013221 Pfam:PF01225 Pfam:PF02875
Pfam:PF08245 UniPathway:UPA00219 InterPro:IPR016040 GO:GO:0005524
GO:GO:0005737 GO:GO:0051301 GO:GO:0008360 Gene3D:3.40.50.720
EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0007049 GO:GO:0009252
Gene3D:3.40.1190.10 Gene3D:3.90.190.20 SUPFAM:SSF53244
SUPFAM:SSF53623 eggNOG:COG0773 KO:K01924 ProtClustDB:PRK00421
GO:GO:0008763 PANTHER:PTHR23135:SF5 TIGRFAMs:TIGR01082
HOGENOM:HOG000256031 OMA:YQPHRYS RefSeq:YP_166443.1
ProteinModelPortal:Q5LU62 GeneID:3192978 KEGG:sil:SPO1196
PATRIC:23375697 Uniprot:Q5LU62
Length = 465
Score = 300 (110.7 bits), Expect = 3.8e-47, Sum P(2) = 3.8e-47
Identities = 82/230 (35%), Positives = 121/230 (52%)
Query: 76 GWIHFVGIXXXXXXXXXXXXXXQGFEVSGSDLVWSSYMEGLLEAGANLHIGHSVSNIQGN 135
G IHFVGI G+ V GSDL S E L GA + G N+
Sbjct: 12 GPIHFVGIGGIGMSGIAEVLLNLGYRVQGSDLKGSKITERLAGLGAEIFEGQRAENL--- 68
Query: 136 DGSRFPNAVVASSAIPQDNVEILHAKSVGVPIYKRDYWLAKLTEKYNLIAVSGSHGKSTT 195
DG+ VV SSAI N E+ A++ G+P+ +R LA+L + IA++G+HGK+TT
Sbjct: 69 DGAA---VVVISSAIKPGNPELDGARAQGLPVVRRADMLAELMRLKSNIAIAGTHGKTTT 125
Query: 196 ASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVV 255
+M+A ++ A G D T I G + + + G G+ V+EADE DG F L +VA+V
Sbjct: 126 TTMMAELMVAGGFDPTVINGGIIHAYSSNARM-GQGEWMVVEADESDGSFNRLPATVAIV 184
Query: 256 TNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQI 305
TN+D EH++ + +A++ F F+ I G V C D ++L+ +I
Sbjct: 185 TNIDPEHMEHWGSIEALRQGFYDFVSNIPFYGIAVCCTDHAEVQALVGRI 234
Score = 254 (94.5 bits), Expect = 3.8e-47, Sum P(2) = 3.8e-47
Identities = 67/174 (38%), Positives = 97/174 (55%)
Query: 325 LWGQGHDYKIITYGFSSFNDWYAESVCPNVQGGS---DYILCERGRPLAQISLQIPGVHN 381
L G+ D ++ TYGF++ D A ++ +GG D +L + +L +PG HN
Sbjct: 230 LVGRITDRRVRTYGFNAQADVRATNL--TYKGGVAHFDILLQHEDMVIEGCTLPMPGDHN 287
Query: 382 VLNSLAVIATVLTLIGDKRQSHESIACLKLPLSKFMGVSRRFDLIGTIYGCHIYDDFAHH 441
V N+L+ +A V +G K ++ L+ F GV+RRF +G + G I DD+ HH
Sbjct: 288 VSNALSAVA-VARHLGMKADE------IRAALAAFGGVNRRFTKVGEVNGVTIIDDYGHH 340
Query: 442 PTEVRAVLQAARQRFPNKALIAVFQPHTYSRLVVLKDDFANALSEADQVVVSAV 495
P E+ AVL+AARQ + +IAV QPH YSRL L DDF +EAD V ++ V
Sbjct: 341 PVEIAAVLKAARQASEGR-VIAVHQPHRYSRLSNLFDDFCACFNEADVVAIAEV 393
>UNIPROTKB|Q9KPG8 [details] [associations]
symbol:murC "UDP-N-acetylmuramate--L-alanine ligase"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0008763 "UDP-N-acetylmuramate-L-alanine ligase activity"
evidence=ISS] [GO:0009252 "peptidoglycan biosynthetic process"
evidence=ISS] HAMAP:MF_00046 InterPro:IPR000713 InterPro:IPR004101
InterPro:IPR005758 InterPro:IPR013221 Pfam:PF01225 Pfam:PF02875
Pfam:PF08245 UniPathway:UPA00219 InterPro:IPR016040 GO:GO:0005524
GO:GO:0005737 GO:GO:0051301 GO:GO:0008360 Gene3D:3.40.50.720
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0007049 GO:GO:0009252
Gene3D:3.40.1190.10 Gene3D:3.90.190.20 SUPFAM:SSF53244
SUPFAM:SSF53623 eggNOG:COG0773 KO:K01924 ProtClustDB:PRK00421
GO:GO:0008763 PANTHER:PTHR23135:SF5 TIGRFAMs:TIGR01082 OMA:YQPHRYS
PIR:D82081 RefSeq:NP_232030.1 ProteinModelPortal:Q9KPG8 SMR:Q9KPG8
DNASU:2613069 GeneID:2613069 KEGG:vch:VC2400 PATRIC:20083821
Uniprot:Q9KPG8
Length = 486
Score = 305 (112.4 bits), Expect = 6.5e-47, Sum P(2) = 6.5e-47
Identities = 73/231 (31%), Positives = 118/231 (51%)
Query: 78 IHFVGIXXXXXXXXXXXXXXQGFEVSGSDLVWSSYMEGLLEAGANLHIGHSVSNIQGNDG 137
IHF+GI +G+++SGSDL ++ + L + GA + IGH N+
Sbjct: 25 IHFIGIGGAGMSGIAEVLLNEGYQISGSDLAANAVTDRLADKGATIFIGHEAHNVA---- 80
Query: 138 SRFPNAVVASSAIPQDNVEILHAKSVGVPIYKRDYWLAKLTEKYNLIAVSGSHGKSTTAS 197
+ VV S+AI + N EI A+ +PI +R LA+L + IAV+G+HGK+TT +
Sbjct: 81 --HASVVVVSTAINEQNPEIQAAREKRIPIVRRAEMLAELMRFRHGIAVAGTHGKTTTTA 138
Query: 198 MLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTN 257
++ + G D T + G V + G + + EADE D FL L P V +VTN
Sbjct: 139 LVTQIYSEAGLDPTFVNGGLVKSAGTNARL-GSSRILIAEADESDASFLHLQPMVTIVTN 197
Query: 258 LDWEHVDIFE-DEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQ 307
++ +H+D + D + +K F FL + G ++C D R L+ ++ +
Sbjct: 198 IEADHMDTYGGDFENLKQTFIDFLHNLPFYGQAILCIDDPVIRELIPRVSR 248
Score = 248 (92.4 bits), Expect = 6.5e-47, Sum P(2) = 6.5e-47
Identities = 63/164 (38%), Positives = 88/164 (53%)
Query: 333 KIITYGFSSFNDWYAESVCPNVQGGSDYILCERGRPLAQISLQIPGVHNVLNSLAVIATV 392
++ITYGFS D E+ N Q G + + +G+ I+L IPG HN LN+ A IA
Sbjct: 249 QVITYGFSEDADVRIENYRQNGQQGQ-FTVVRKGKANLDITLNIPGRHNALNAAAAIAVA 307
Query: 393 LTLIGDKRQSHESIACLKLPLSKFMGVSRRFDLIG---TIYG-CHIYDDFAHHPTEVRAV 448
D R A L+ ++ G RRFD +G T G + DD+ HHPTEV
Sbjct: 308 TE--DDIRDE----AILRA-MANTQGTGRRFDHLGEFETGNGVAMLVDDYGHHPTEVDVT 360
Query: 449 LQAARQRFPNKALIAVFQPHTYSRLVVLKDDFANALSEADQVVV 492
++AAR + K L+ +FQPH Y+R L DDFAN L + D +++
Sbjct: 361 IKAARNGWAEKRLVMIFQPHRYTRTRDLYDDFANVLEQVDVLIM 404
>TIGR_CMR|VC_2400 [details] [associations]
symbol:VC_2400 "UDP-N-acetylmuramate--alanine ligase"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008763
"UDP-N-acetylmuramate-L-alanine ligase activity" evidence=ISS]
[GO:0009252 "peptidoglycan biosynthetic process" evidence=ISS]
HAMAP:MF_00046 InterPro:IPR000713 InterPro:IPR004101
InterPro:IPR005758 InterPro:IPR013221 Pfam:PF01225 Pfam:PF02875
Pfam:PF08245 UniPathway:UPA00219 InterPro:IPR016040 GO:GO:0005524
GO:GO:0005737 GO:GO:0051301 GO:GO:0008360 Gene3D:3.40.50.720
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0007049 GO:GO:0009252
Gene3D:3.40.1190.10 Gene3D:3.90.190.20 SUPFAM:SSF53244
SUPFAM:SSF53623 eggNOG:COG0773 KO:K01924 ProtClustDB:PRK00421
GO:GO:0008763 PANTHER:PTHR23135:SF5 TIGRFAMs:TIGR01082 OMA:YQPHRYS
PIR:D82081 RefSeq:NP_232030.1 ProteinModelPortal:Q9KPG8 SMR:Q9KPG8
DNASU:2613069 GeneID:2613069 KEGG:vch:VC2400 PATRIC:20083821
Uniprot:Q9KPG8
Length = 486
Score = 305 (112.4 bits), Expect = 6.5e-47, Sum P(2) = 6.5e-47
Identities = 73/231 (31%), Positives = 118/231 (51%)
Query: 78 IHFVGIXXXXXXXXXXXXXXQGFEVSGSDLVWSSYMEGLLEAGANLHIGHSVSNIQGNDG 137
IHF+GI +G+++SGSDL ++ + L + GA + IGH N+
Sbjct: 25 IHFIGIGGAGMSGIAEVLLNEGYQISGSDLAANAVTDRLADKGATIFIGHEAHNVA---- 80
Query: 138 SRFPNAVVASSAIPQDNVEILHAKSVGVPIYKRDYWLAKLTEKYNLIAVSGSHGKSTTAS 197
+ VV S+AI + N EI A+ +PI +R LA+L + IAV+G+HGK+TT +
Sbjct: 81 --HASVVVVSTAINEQNPEIQAAREKRIPIVRRAEMLAELMRFRHGIAVAGTHGKTTTTA 138
Query: 198 MLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTN 257
++ + G D T + G V + G + + EADE D FL L P V +VTN
Sbjct: 139 LVTQIYSEAGLDPTFVNGGLVKSAGTNARL-GSSRILIAEADESDASFLHLQPMVTIVTN 197
Query: 258 LDWEHVDIFE-DEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQ 307
++ +H+D + D + +K F FL + G ++C D R L+ ++ +
Sbjct: 198 IEADHMDTYGGDFENLKQTFIDFLHNLPFYGQAILCIDDPVIRELIPRVSR 248
Score = 248 (92.4 bits), Expect = 6.5e-47, Sum P(2) = 6.5e-47
Identities = 63/164 (38%), Positives = 88/164 (53%)
Query: 333 KIITYGFSSFNDWYAESVCPNVQGGSDYILCERGRPLAQISLQIPGVHNVLNSLAVIATV 392
++ITYGFS D E+ N Q G + + +G+ I+L IPG HN LN+ A IA
Sbjct: 249 QVITYGFSEDADVRIENYRQNGQQGQ-FTVVRKGKANLDITLNIPGRHNALNAAAAIAVA 307
Query: 393 LTLIGDKRQSHESIACLKLPLSKFMGVSRRFDLIG---TIYG-CHIYDDFAHHPTEVRAV 448
D R A L+ ++ G RRFD +G T G + DD+ HHPTEV
Sbjct: 308 TE--DDIRDE----AILRA-MANTQGTGRRFDHLGEFETGNGVAMLVDDYGHHPTEVDVT 360
Query: 449 LQAARQRFPNKALIAVFQPHTYSRLVVLKDDFANALSEADQVVV 492
++AAR + K L+ +FQPH Y+R L DDFAN L + D +++
Sbjct: 361 IKAARNGWAEKRLVMIFQPHRYTRTRDLYDDFANVLEQVDVLIM 404
>TIGR_CMR|CBU_0136 [details] [associations]
symbol:CBU_0136 "UDP-N-acetylmuramate--alanine ligase"
species:227377 "Coxiella burnetii RSA 493" [GO:0008763
"UDP-N-acetylmuramate-L-alanine ligase activity" evidence=ISS]
[GO:0009252 "peptidoglycan biosynthetic process" evidence=ISS]
HAMAP:MF_00046 InterPro:IPR000713 InterPro:IPR004101
InterPro:IPR005758 InterPro:IPR013221 Pfam:PF01225 Pfam:PF02875
Pfam:PF08245 UniPathway:UPA00219 InterPro:IPR016040 GO:GO:0005524
GO:GO:0005737 GO:GO:0051301 GO:GO:0008360 Gene3D:3.40.50.720
GO:GO:0007049 EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0009252
Gene3D:3.40.1190.10 Gene3D:3.90.190.20 SUPFAM:SSF53244
SUPFAM:SSF53623 eggNOG:COG0773 KO:K01924 ProtClustDB:PRK00421
GO:GO:0008763 PANTHER:PTHR23135:SF5 TIGRFAMs:TIGR01082
HOGENOM:HOG000256031 OMA:YQPHRYS RefSeq:NP_819186.1
ProteinModelPortal:Q83F17 PRIDE:Q83F17 GeneID:1208007
KEGG:cbu:CBU_0136 PATRIC:17928955
BioCyc:CBUR227377:GJ7S-138-MONOMER Uniprot:Q83F17
Length = 465
Score = 287 (106.1 bits), Expect = 1.7e-44, Sum P(2) = 1.7e-44
Identities = 75/225 (33%), Positives = 112/225 (49%)
Query: 78 IHFVGIXXXXXXXXXXXXXXQGFEVSGSDLVWSSYMEGLLEAGANLHIGHSVSNIQGNDG 137
+H +GI +G V+GSD+ + E L GA + H + I D
Sbjct: 11 VHCLGIGGIGVSALAEILLKKGCRVTGSDVSPNKNTERLQRLGAEIIFNHDGTAITQAD- 69
Query: 138 SRFPNAVVASSAIPQDNVEILHAKSVGVPIYKRDYWLAKLTEKYNLIAVSGSHGKSTTAS 197
V SSAI N E++ AK +P+ KR LA L ++Y IAV+G+HGK+TT+
Sbjct: 70 -----CAVYSSAIGATNPELMAAKQAKIPLLKRGEMLANLMKEYQSIAVAGAHGKTTTSG 124
Query: 198 MLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTN 257
ML++ D T +VG V G G F+ EADE D FL + P +AVVTN
Sbjct: 125 MLSHAFVEANLDPTFMVGG-VLNNSQTPARVGNGHYFIAEADESDASFLFMHPDIAVVTN 183
Query: 258 LDWEHVDIFE-DEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSL 301
+D +H+ ++ D + +K + +FL+Q G +V+C D R +
Sbjct: 184 IDADHLSTYDGDFNRLKQTYIQFLEQTAQDGVVVLCLDDPILREI 228
Score = 245 (91.3 bits), Expect = 1.7e-44, Sum P(2) = 1.7e-44
Identities = 64/168 (38%), Positives = 89/168 (52%)
Query: 333 KIITYGFSSFNDWYAESVCPN-VQGGSDYILCERGRPLAQISLQIPGVHNVLNSLAVIAT 391
++ITYGFSS + C +Q +R PL + L +PG HN LN AT
Sbjct: 235 RVITYGFSSDAQYRVVDYCQQGIQSLFQIHSPQRKAPLT-VKLSMPGQHNALN-----AT 288
Query: 392 VLTLIGDKRQSHESIACLKLPLSKFMGVSRRFDLIGTIY----GCHIYDDFAHHPTEVRA 447
+T I D Q +E A LK L+ F GV RRF + G + I +D+ HHP E++A
Sbjct: 289 AVTAIADVVQMNEP-ALLK-SLADFPGVDRRFTIRGEMILPKGNALIIEDYGHHPNEIKA 346
Query: 448 VLQAARQRFPNKALIAVFQPHTYSRLVVLKDDFANALSEADQVVVSAV 495
L AAR +P + ++ VFQPH YSR L +F + L+E D +V+ V
Sbjct: 347 TLAAARAAWPERRMVLVFQPHRYSRTRDLMTEFVSVLAETDWLVLLEV 394
>UNIPROTKB|P65472 [details] [associations]
symbol:murC "UDP-N-acetylmuramate--L-alanine ligase"
species:1773 "Mycobacterium tuberculosis" [GO:0008763
"UDP-N-acetylmuramate-L-alanine ligase activity" evidence=IDA]
[GO:0009252 "peptidoglycan biosynthetic process" evidence=IDA]
[GO:0040007 "growth" evidence=IMP] HAMAP:MF_00046
InterPro:IPR000713 InterPro:IPR004101 InterPro:IPR005758
InterPro:IPR013221 Pfam:PF01225 Pfam:PF02875 Pfam:PF08245
UniPathway:UPA00219 InterPro:IPR016040 GO:GO:0005524 GO:GO:0005737
GO:GO:0040007 GO:GO:0051301 GO:GO:0008360 EMBL:AE000516
GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR
Gene3D:3.40.50.720 EMBL:BX842578 GO:GO:0007049 GO:GO:0009252
Gene3D:3.40.1190.10 Gene3D:3.90.190.20 SUPFAM:SSF53244
SUPFAM:SSF53623 eggNOG:COG0773 KO:K01924 ProtClustDB:PRK00421
GO:GO:0008763 PANTHER:PTHR23135:SF5 TIGRFAMs:TIGR01082
HOGENOM:HOG000256031 OMA:YQPHRYS PIR:D70579 RefSeq:NP_216668.1
RefSeq:NP_336681.1 RefSeq:YP_006515571.1 ProteinModelPortal:P65472
SMR:P65472 PRIDE:P65472 EnsemblBacteria:EBMYCT00000002234
EnsemblBacteria:EBMYCT00000069467 GeneID:13316963 GeneID:887983
GeneID:924250 KEGG:mtc:MT2211 KEGG:mtu:Rv2152c KEGG:mtv:RVBD_2152c
PATRIC:18126620 TubercuList:Rv2152c BioCyc:MetaCyc:MONOMER-15224
Uniprot:P65472
Length = 494
Score = 321 (118.1 bits), Expect = 3.0e-42, Sum P(2) = 3.0e-42
Identities = 82/236 (34%), Positives = 124/236 (52%)
Query: 78 IHFVGIXXXXXXXXXXXXXXQGFEVSGSDLVWSSYMEGLLEAGANLHIGHSVSNIQGNDG 137
+H VGI +G VSGSD S + L GA + IGH S++ G
Sbjct: 13 VHMVGIGGAGMSGIARILLDRGGLVSGSDAKESRGVHALRARGALIRIGHDASSLDLLPG 72
Query: 138 SRFPNAVVAS-SAIPQDNVEILHAKSVGVPIYKRDYWLAKLTEKYNLIAVSGSHGKSTTA 196
AVV + +AIP+ N E++ A+ G+P+ R LAKL + V+G+HGK+TT
Sbjct: 73 GA--TAVVTTHAAIPKTNPELVEARRRGIPVVLRPAVLAKLMAGRTTLMVTGTHGKTTTT 130
Query: 197 SMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVT 256
SML L+ G D + VG + + + +G G FV EADE DG L +P VAV+T
Sbjct: 131 SMLIVALQHCGLDPSFAVGGELGEAGTNA-HHGSGDCFVAEADESDGSLLQYTPHVAVIT 189
Query: 257 NLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQDTGLK 312
N++ +H+D + +A ++F F+++I GG LV+C D +L Q + G++
Sbjct: 190 NIESDHLDFYGSVEAYVAVFDSFVERIVPGGALVVCTDDPGGAALA-QRATELGIR 244
Score = 184 (69.8 bits), Expect = 3.0e-42, Sum P(2) = 3.0e-42
Identities = 52/127 (40%), Positives = 71/127 (55%)
Query: 374 LQIPGVHNVLNSL-AVIATVLTLIGDKRQSHESIACLKLPLSKFMGVSRRFDLIGTI-YG 431
L +PG H LN+L A++A V IG + E + L+ F GV RRF+L+GT G
Sbjct: 291 LSVPGRHMALNALGALLAAVQ--IG--APADEVLD----GLAGFEGVRRRFELVGTCGVG 342
Query: 432 ---CHIYDDFAHHPTEVRAVLQAAR---QRFPNKALIAVFQPHTYSRLVVLKDDFANALS 485
++DD+AHHPTE+ A L AAR ++ + VFQPH YSR +F AL+
Sbjct: 343 KASVRVFDDYAHHPTEISATLAAARMVLEQGDGGRCMVVFQPHLYSRTKAFAAEFGRALN 402
Query: 486 EADQVVV 492
AD+V V
Sbjct: 403 AADEVFV 409
>TIGR_CMR|BA_4938 [details] [associations]
symbol:BA_4938 "UDP-N-acetylmuramate--alanine ligase"
species:198094 "Bacillus anthracis str. Ames" [GO:0008763
"UDP-N-acetylmuramate-L-alanine ligase activity" evidence=ISS]
[GO:0009252 "peptidoglycan biosynthetic process" evidence=ISS]
HAMAP:MF_00046 InterPro:IPR000713 InterPro:IPR004101
InterPro:IPR005758 InterPro:IPR013221 Pfam:PF01225 Pfam:PF02875
Pfam:PF08245 UniPathway:UPA00219 InterPro:IPR016040 GO:GO:0005524
GO:GO:0005737 GO:GO:0051301 GO:GO:0008360 Gene3D:3.40.50.720
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0007049
GO:GO:0009252 Gene3D:3.40.1190.10 Gene3D:3.90.190.20
SUPFAM:SSF53244 SUPFAM:SSF53623 eggNOG:COG0773 RefSeq:NP_847136.1
RefSeq:YP_021584.1 RefSeq:YP_030829.1 ProteinModelPortal:Q81KQ2
DNASU:1084140 EnsemblBacteria:EBBACT00000009603
EnsemblBacteria:EBBACT00000017997 EnsemblBacteria:EBBACT00000024359
GeneID:1084140 GeneID:2819635 GeneID:2850421 KEGG:ban:BA_4938
KEGG:bar:GBAA_4938 KEGG:bat:BAS4583 HOGENOM:HOG000256033 KO:K01924
OMA:KPGYTVI ProtClustDB:PRK00421
BioCyc:BANT260799:GJAJ-4639-MONOMER
BioCyc:BANT261594:GJ7F-4797-MONOMER GO:GO:0008763
PANTHER:PTHR23135:SF5 TIGRFAMs:TIGR01082 Uniprot:Q81KQ2
Length = 436
Score = 250 (93.1 bits), Expect = 1.6e-40, Sum P(2) = 1.6e-40
Identities = 69/223 (30%), Positives = 113/223 (50%)
Query: 79 HFVGIXXXXXXXXXXXXXXQGFEVSGSDLVWSSYMEGLLEAGANLHI-GHSVSNIQGNDG 137
HFVGI V GSD + + LE N+ I SN++ +G
Sbjct: 5 HFVGIKGTGMSSLAQILHDMKHTVQGSDYEKRFFTQTALEK-RNISILPFDKSNVK--EG 61
Query: 138 SRFPNAVVASSAIPQDNVEILHAKSVGVPIYKRDYWLAKLTEKYNLIAVSGSHGKSTTAS 197
++A +A P + EI+ AK + +P+++ ++L L +Y +AV+G+HGK++T
Sbjct: 62 Q----VIIAGNAFPDTHEEIVAAKELNIPVHRYHHFLGDLMNQYTSVAVTGAHGKTSTTG 117
Query: 198 MLAYVLKAMGDDLTAIVGAHVPQF--PDGSIFYG--GGKNFVLEADEYDGCFLGLSPSVA 253
+LA+V++ GAH + DG+ +G K FV EA EY FL +P A
Sbjct: 118 LLAHVMQ----------GAHPTSYLIGDGT-GHGVENSKYFVFEACEYRRHFLSYNPDYA 166
Query: 254 VVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQ 296
++TN+D++H D F D + V S F+ Q++ G ++ CGD +
Sbjct: 167 IMTNIDFDHPDYFTDINDVFSAFQEMALQVKKG--IIACGDDE 207
Score = 249 (92.7 bits), Expect = 1.6e-40, Sum P(2) = 1.6e-40
Identities = 64/185 (34%), Positives = 98/185 (52%)
Query: 307 QDTGLKYSGGVVS-NQSSDLWGQGHDYKIITYGFSSFNDWYAESVCPNVQGGSDYILCER 365
Q+ L+ G+++ +L +I YGF ND+ A ++ G + + + R
Sbjct: 190 QEMALQVKKGIIACGDDEELQKIQAKVPVIFYGFGEDNDFQARNIQKRTDG-TIFDVFVR 248
Query: 366 GRPLAQISLQIPGVHNVLNSLAVIATVLTLIGDKRQSHESIACLKLPLSKFMGVSRRFDL 425
+ G H+VLN+LAVIA + + +K L+ F GV RRF+
Sbjct: 249 NTYYDTFKITGYGNHSVLNALAVIALC-------HYENVDVEAVKHQLTTFEGVKRRFNE 301
Query: 426 IGTIYGCHIYDDFAHHPTEVRAVLQAARQRFPNKALIAVFQPHTYSRLVVLKDDFANALS 485
+ I DD+AHHPTE+ A ++AARQ+ P + ++AVFQPHT+SR D+FA +LS
Sbjct: 302 -KPMGEQVIIDDYAHHPTEINATIEAARQKHPEREIVAVFQPHTFSRTEKFLDEFAESLS 360
Query: 486 EADQV 490
+ADQV
Sbjct: 361 KADQV 365
>TIGR_CMR|CJE_1198 [details] [associations]
symbol:CJE_1198 "UDP-N-acetylmuramate--alanine ligase"
species:195099 "Campylobacter jejuni RM1221" [GO:0008763
"UDP-N-acetylmuramate-L-alanine ligase activity" evidence=ISS]
[GO:0009252 "peptidoglycan biosynthetic process" evidence=ISS]
HAMAP:MF_00046 InterPro:IPR000713 InterPro:IPR004101
InterPro:IPR005758 InterPro:IPR013221 Pfam:PF01225 Pfam:PF02875
Pfam:PF08245 UniPathway:UPA00219 InterPro:IPR016040 GO:GO:0005524
GO:GO:0005737 GO:GO:0051301 GO:GO:0008360 Gene3D:3.40.50.720
GO:GO:0007049 EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0009252
Gene3D:3.40.1190.10 Gene3D:3.90.190.20 SUPFAM:SSF53244
SUPFAM:SSF53623 eggNOG:COG0773 KO:K01924 ProtClustDB:PRK00421
GO:GO:0008763 PANTHER:PTHR23135:SF5 TIGRFAMs:TIGR01082
RefSeq:YP_179188.1 ProteinModelPortal:Q5HU47 STRING:Q5HU47
GeneID:3231707 KEGG:cjr:CJE1198 PATRIC:20044192
HOGENOM:HOG000256031 OMA:YQPHRYS
BioCyc:CJEJ195099:GJC0-1225-MONOMER Uniprot:Q5HU47
Length = 431
Score = 296 (109.3 bits), Expect = 1.3e-37, Sum P(2) = 1.3e-37
Identities = 74/209 (35%), Positives = 110/209 (52%)
Query: 78 IHFVGIXXXXXXXXXXXXXXQGFEVSGSDLVWSSYMEGLLEAGANLHIGHSVSNIQGNDG 137
IHF+GI +GF++SGSDL S + L + G + I H NI D
Sbjct: 4 IHFIGIGGIGISALARFLKEKGFKISGSDLKESKITKELEKEGVKVSIPHHKDNILNKD- 62
Query: 138 SRFPNAVVASSAIPQDNVEILHAKSVGVPIYKRDYWLAKLTEKYNLIAVSGSHGKSTTAS 197
V+ S+AI ++N E HAK +G+ R L + E + AV+G+HGKSTT+S
Sbjct: 63 -----LVIYSAAIKEENPEFKHAKELGIKCLSRKEALPLILEDKRVFAVAGAHGKSTTSS 117
Query: 198 MLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTN 257
+LA +L DD + I+GA + +F I Y +N V EADE D FL +P +A+VTN
Sbjct: 118 ILASLL----DDASVIIGAILKEFGSNMI-YKESQNLVFEADESDSSFLNSNPYLAIVTN 172
Query: 258 LDWEHVDIFEDE-DAVKSIFRRFLKQIRV 285
+ EH+D + +E + + FL ++
Sbjct: 173 AEAEHLDHYGNEVSKLHHAYAEFLDTAKI 201
Score = 162 (62.1 bits), Expect = 1.3e-37, Sum P(2) = 1.3e-37
Identities = 39/122 (31%), Positives = 64/122 (52%)
Query: 378 GVHNVLN-SLAVIATVLTLIGDKRQSHESIACLKLPLSKFMGVSRRFDLIGTIYGCHIYD 436
G H L+ SLA++A + L I ++ L + G+ +RFD++ + D
Sbjct: 257 GYHLALDASLAILAALNFL---------DIETIRTRLKNYQGIKKRFDILYADENLVLID 307
Query: 437 DFAHHPTEVRAVLQAARQRFP---NKALIAVFQPHTYSRLVVLKDDFANALSEADQVVVS 493
D+ HHPTE++A L AA++ K + A+F+PH Y+RL +FA A D++V+
Sbjct: 308 DYGHHPTEIKATLSAAQEYAKLGGYKKITAIFEPHRYTRLAANLKEFAKAFESIDELVIL 367
Query: 494 AV 495
V
Sbjct: 368 PV 369
>UNIPROTKB|Q9KP37 [details] [associations]
symbol:VC_2542
"UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelat
e ligase" species:243277 "Vibrio cholerae O1 biovar El Tor str.
N16961" [GO:0009252 "peptidoglycan biosynthetic process"
evidence=ISS] [GO:0016881 "acid-amino acid ligase activity"
evidence=ISS] InterPro:IPR000713 InterPro:IPR004101
InterPro:IPR005757 InterPro:IPR013221 Pfam:PF01225 Pfam:PF02875
Pfam:PF08245 InterPro:IPR016040 GO:GO:0005524 Gene3D:3.40.50.720
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0016881 GO:GO:0009252
Gene3D:3.40.1190.10 Gene3D:3.90.190.20 SUPFAM:SSF53244
SUPFAM:SSF53623 KO:K02558 OMA:PYTSGPQ PANTHER:PTHR23135:SF8
TIGRFAMs:TIGR01081 HSSP:P45066 PIR:H82063 RefSeq:NP_232170.1
ProteinModelPortal:Q9KP37 DNASU:2615559 GeneID:2615559
KEGG:vch:VC2542 PATRIC:20084107 ProtClustDB:CLSK874840
Uniprot:Q9KP37
Length = 451
Score = 208 (78.3 bits), Expect = 7.3e-30, Sum P(2) = 7.3e-30
Identities = 73/274 (26%), Positives = 125/274 (45%)
Query: 78 IHFVGIXXXXXXXXXXXXXXQGFEVSGSDLVWSSYMEGLLEAGANLHIGHSVSNIQGNDG 137
IH +GI G +V+GSD M +LEA + I+G D
Sbjct: 3 IHILGICGTFMGGVAMLARQLGHKVTGSDANVYPPMSTMLEA-------QGIEIIEGFDP 55
Query: 138 SRF---PNAVVASSAIPQDNVEILHAKSVGVPIYKRDYWLAK--LTEKYNLIAVSGSHGK 192
+ P+ VV +A+ + N + + + + WL L +++ +IAVSG+HGK
Sbjct: 56 VQLEPKPDLVVIGNAMSRGNPCVEYVLNHNLRYTSGPQWLQDFLLHDRW-VIAVSGTHGK 114
Query: 193 STTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLG----- 247
+TT+SM+A+VL+ G +VG + F S G FV+EADEYD F
Sbjct: 115 TTTSSMIAWVLEHCGYQPGFLVGGVLGNFGI-SARLGESMFFVVEADEYDSAFFDKRSKF 173
Query: 248 --LSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQ- 304
P V+ NL+++H DIF++ +A+K F ++ + G ++ + +L +
Sbjct: 174 VHYHPRTLVMNNLEFDHADIFDNLEAIKRQFHHLVRTVPGNGRILAPKQDEALADVLQRG 233
Query: 305 IKQDTGLKYSGGVVSNQSSDLWGQGHDYKIITYG 338
+T ++SG Q+ + G + ++ G
Sbjct: 234 CWSET--EFSGEQGEWQAEKITADGSQFHVLLKG 265
Score = 196 (74.1 bits), Expect = 7.3e-30, Sum P(2) = 7.3e-30
Identities = 51/148 (34%), Positives = 78/148 (52%)
Query: 344 DWYAESVCPNVQGGSDYILCERGRPLAQISLQIPGVHNVLNSLAVIATVLTLIGDKRQSH 403
+W AE + + GS + + +G + Q++ + G HNV N+L IA +G +
Sbjct: 246 EWQAEKITAD---GSQFHVLLKGERVGQVNWSLVGDHNVSNALMAIAAARH-VGVAPE-- 299
Query: 404 ESIACLKLPLSKFMGVSRRFDLIGTIYGCHIYDDFAHHPTEVRAVLQAARQRFPNKALIA 463
+AC L L F+ RR +L G I G +YDDFAHHPT + L R + +K +IA
Sbjct: 300 --LACEALGL--FVNTKRRLELKGEINGVTVYDDFAHHPTAIELTLGGLRNKVGDKKIIA 355
Query: 464 VFQPHTYS-RLVVLKDDFANALSEADQV 490
V +P + + +L V K+ A +L AD V
Sbjct: 356 VLEPRSATMKLGVHKETLAASLHSADSV 383
>TIGR_CMR|VC_2542 [details] [associations]
symbol:VC_2542
"UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelat
e ligase" species:686 "Vibrio cholerae O1 biovar El Tor"
[GO:0009252 "peptidoglycan biosynthetic process" evidence=ISS]
[GO:0016881 "acid-amino acid ligase activity" evidence=ISS]
InterPro:IPR000713 InterPro:IPR004101 InterPro:IPR005757
InterPro:IPR013221 Pfam:PF01225 Pfam:PF02875 Pfam:PF08245
InterPro:IPR016040 GO:GO:0005524 Gene3D:3.40.50.720 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0016881 GO:GO:0009252
Gene3D:3.40.1190.10 Gene3D:3.90.190.20 SUPFAM:SSF53244
SUPFAM:SSF53623 KO:K02558 OMA:PYTSGPQ PANTHER:PTHR23135:SF8
TIGRFAMs:TIGR01081 HSSP:P45066 PIR:H82063 RefSeq:NP_232170.1
ProteinModelPortal:Q9KP37 DNASU:2615559 GeneID:2615559
KEGG:vch:VC2542 PATRIC:20084107 ProtClustDB:CLSK874840
Uniprot:Q9KP37
Length = 451
Score = 208 (78.3 bits), Expect = 7.3e-30, Sum P(2) = 7.3e-30
Identities = 73/274 (26%), Positives = 125/274 (45%)
Query: 78 IHFVGIXXXXXXXXXXXXXXQGFEVSGSDLVWSSYMEGLLEAGANLHIGHSVSNIQGNDG 137
IH +GI G +V+GSD M +LEA + I+G D
Sbjct: 3 IHILGICGTFMGGVAMLARQLGHKVTGSDANVYPPMSTMLEA-------QGIEIIEGFDP 55
Query: 138 SRF---PNAVVASSAIPQDNVEILHAKSVGVPIYKRDYWLAK--LTEKYNLIAVSGSHGK 192
+ P+ VV +A+ + N + + + + WL L +++ +IAVSG+HGK
Sbjct: 56 VQLEPKPDLVVIGNAMSRGNPCVEYVLNHNLRYTSGPQWLQDFLLHDRW-VIAVSGTHGK 114
Query: 193 STTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLG----- 247
+TT+SM+A+VL+ G +VG + F S G FV+EADEYD F
Sbjct: 115 TTTSSMIAWVLEHCGYQPGFLVGGVLGNFGI-SARLGESMFFVVEADEYDSAFFDKRSKF 173
Query: 248 --LSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQ- 304
P V+ NL+++H DIF++ +A+K F ++ + G ++ + +L +
Sbjct: 174 VHYHPRTLVMNNLEFDHADIFDNLEAIKRQFHHLVRTVPGNGRILAPKQDEALADVLQRG 233
Query: 305 IKQDTGLKYSGGVVSNQSSDLWGQGHDYKIITYG 338
+T ++SG Q+ + G + ++ G
Sbjct: 234 CWSET--EFSGEQGEWQAEKITADGSQFHVLLKG 265
Score = 196 (74.1 bits), Expect = 7.3e-30, Sum P(2) = 7.3e-30
Identities = 51/148 (34%), Positives = 78/148 (52%)
Query: 344 DWYAESVCPNVQGGSDYILCERGRPLAQISLQIPGVHNVLNSLAVIATVLTLIGDKRQSH 403
+W AE + + GS + + +G + Q++ + G HNV N+L IA +G +
Sbjct: 246 EWQAEKITAD---GSQFHVLLKGERVGQVNWSLVGDHNVSNALMAIAAARH-VGVAPE-- 299
Query: 404 ESIACLKLPLSKFMGVSRRFDLIGTIYGCHIYDDFAHHPTEVRAVLQAARQRFPNKALIA 463
+AC L L F+ RR +L G I G +YDDFAHHPT + L R + +K +IA
Sbjct: 300 --LACEALGL--FVNTKRRLELKGEINGVTVYDDFAHHPTAIELTLGGLRNKVGDKKIIA 355
Query: 464 VFQPHTYS-RLVVLKDDFANALSEADQV 490
V +P + + +L V K+ A +L AD V
Sbjct: 356 VLEPRSATMKLGVHKETLAASLHSADSV 383
>TIGR_CMR|SO_3805 [details] [associations]
symbol:SO_3805
"UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelat
e ligase" species:211586 "Shewanella oneidensis MR-1" [GO:0009252
"peptidoglycan biosynthetic process" evidence=ISS] [GO:0016881
"acid-amino acid ligase activity" evidence=ISS] InterPro:IPR000713
InterPro:IPR004101 InterPro:IPR005757 InterPro:IPR013221
Pfam:PF01225 Pfam:PF02875 Pfam:PF08245 InterPro:IPR016040
GO:GO:0005524 Gene3D:3.40.50.720 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0016881 GO:GO:0009252
Gene3D:3.40.1190.10 Gene3D:3.90.190.20 SUPFAM:SSF53244
SUPFAM:SSF53623 HOGENOM:HOG000256032 KO:K02558 OMA:PYTSGPQ
PANTHER:PTHR23135:SF8 TIGRFAMs:TIGR01081 RefSeq:NP_719341.1
HSSP:P45066 ProteinModelPortal:Q8EAT7 DNASU:1171449 GeneID:1171449
KEGG:son:SO_3805 PATRIC:23527284 ProtClustDB:CLSK907349
Uniprot:Q8EAT7
Length = 465
Score = 250 (93.1 bits), Expect = 8.9e-29, Sum P(2) = 8.9e-29
Identities = 82/283 (28%), Positives = 134/283 (47%)
Query: 78 IHFVGIXXXXXXXXXXXXXXQGFEVSGSDL-VWSSYMEGLLEAGANLHIGHSVSNIQGND 136
+H +GI +G V+GSD V+ L E G L G S + G+
Sbjct: 3 VHILGICGTFMGGLALLARAKGHRVTGSDANVYPPMSTQLEEQGIELIQGFDPSQL-GDA 61
Query: 137 GSRFPNAVVASSAIPQDNVEILHAKSVGVPIYKRDYWLAK--LTEKYNLIAVSGSHGKST 194
GS +P+ VV +A+ + N + ++G+P +L L E++ ++AVSG+HGK++
Sbjct: 62 GS-YPDIVVIGNAMSRGNPCVEAVLNLGIPYTSGPQFLVDHILPERW-VLAVSGTHGKTS 119
Query: 195 TASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLG------- 247
T+SMLA++L+ G ++G VPQ S G FV+EADEYD F
Sbjct: 120 TSSMLAWILEDCGYQPGFLIGG-VPQNFGVSARLGESAFFVVEADEYDSAFFDKRSKFVH 178
Query: 248 LSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQ--- 304
P V+ NL+++H DIF D A++ F ++ + G ++ DS + +D
Sbjct: 179 YHPRTLVINNLEFDHADIFADLAAIQKQFHHQIRTVPGQGKVIWPADSHAVKQTIDMGCW 238
Query: 305 IKQDTGLKYSGGVVSN-QSSDLWGQGHDYKIITYGFSS-FNDW 345
+Q+T +S V + L H++++ G S DW
Sbjct: 239 SEQET--YHSSEVTKGWHAKALSDDCHEFEVFFDGQSQGVLDW 279
Score = 139 (54.0 bits), Expect = 8.9e-29, Sum P(2) = 8.9e-29
Identities = 40/167 (23%), Positives = 79/167 (47%)
Query: 336 TYGFSSFND-WYAESVCPNVQGGSDYILCERGRPLAQISLQIPGVHNVLNSLAVIATVLT 394
TY S W+A+++ + ++ + G+ + + G HN+ N++ IA
Sbjct: 243 TYHSSEVTKGWHAKALSDDCH---EFEVFFDGQSQGVLDWALIGQHNIENAVMAIAAA-- 297
Query: 395 LIGDKRQSHESIACLKLPLSKFMGVSRRFDLIGTIYGCHIYDDFAHHPTEVRAVLQAARQ 454
+ A + L++F+ RR +L+ T+ G +YDDFAHHPT + ++ R
Sbjct: 298 ----RHVGVAPSAAIDA-LARFVPPKRRLELLDTVNGVSVYDDFAHHPTAIATTIKGMRA 352
Query: 455 RFPNKALIAVFQPHTYS-RLVVLKDDFANALSEADQVVV-SAVLVFW 499
+ + V +P + + + V KD A+++ +AD+ + A + W
Sbjct: 353 KVGQTKITIVLEPRSNTMKSGVHKDTLAHSMLQADEAFLYQADTIDW 399
>UNIPROTKB|P37773 [details] [associations]
symbol:mpl species:83333 "Escherichia coli K-12"
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0009058 "biosynthetic
process" evidence=IEA] [GO:0009254 "peptidoglycan turnover"
evidence=IEA] [GO:0005576 "extracellular region" evidence=IEA]
[GO:0051301 "cell division" evidence=IEA] [GO:0009252
"peptidoglycan biosynthetic process" evidence=IEA] [GO:0008360
"regulation of cell shape" evidence=IEA] [GO:0007049 "cell cycle"
evidence=IEA] [GO:0071555 "cell wall organization" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0016881 "acid-amino acid ligase
activity" evidence=IEA;IDA] InterPro:IPR000713 InterPro:IPR004101
InterPro:IPR005757 InterPro:IPR013221 Pfam:PF01225 Pfam:PF02875
Pfam:PF08245 UniPathway:UPA00544 InterPro:IPR016040 GO:GO:0005524
GO:GO:0005737 GO:GO:0005576 GO:GO:0051301 GO:GO:0008360
Gene3D:3.40.50.720 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0007049
EMBL:U14003 GO:GO:0009254 GO:GO:0016881 GO:GO:0009252
Gene3D:3.40.1190.10 Gene3D:3.90.190.20 SUPFAM:SSF53244
SUPFAM:SSF53623 EMBL:X12545 PIR:S56459 RefSeq:NP_418654.1
RefSeq:YP_492374.1 ProteinModelPortal:P37773 SMR:P37773
DIP:DIP-10246N IntAct:P37773 PRIDE:P37773
EnsemblBacteria:EBESCT00000000973 EnsemblBacteria:EBESCT00000000974
EnsemblBacteria:EBESCT00000018246 GeneID:12930329 GeneID:948752
KEGG:ecj:Y75_p4118 KEGG:eco:b4233 PATRIC:32124039 EchoBASE:EB2335
EcoGene:EG12440 eggNOG:COG0773 HOGENOM:HOG000256032 KO:K02558
OMA:PYTSGPQ ProtClustDB:CLSK880878 BioCyc:EcoCyc:EG12440-MONOMER
BioCyc:ECOL316407:JW4192-MONOMER BioCyc:MetaCyc:EG12440-MONOMER
Genevestigator:P37773 PANTHER:PTHR23135:SF8 TIGRFAMs:TIGR01081
Uniprot:P37773
Length = 457
Score = 211 (79.3 bits), Expect = 4.7e-27, Sum P(2) = 4.7e-27
Identities = 67/226 (29%), Positives = 109/226 (48%)
Query: 78 IHFVGIXXXXXXXXXXXXXXQGFEVSGSDLVWSSYMEGLLEA-GANLHIGHSVSNIQGND 136
IH +GI G EV+GSD M LLE G L G+ S ++
Sbjct: 3 IHILGICGTFMGGLAMLARQLGHEVTGSDANVYPPMSTLLEKQGIELIQGYDASQLEPQ- 61
Query: 137 GSRFPNAVVASSAIPQDN--VEILHAKSVGVPIYKRDYWLAK--LTEKYNLIAVSGSHGK 192
P+ V+ +A+ + N VE + K++ P WL L +++ ++AV+G+HGK
Sbjct: 62 ----PDLVIIGNAMTRGNPCVEAVLEKNI--PYMSGPQWLHDFVLRDRW-VLAVAGTHGK 114
Query: 193 STTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGC-------- 244
+TTA M ++L+ G ++G VP + S G FV+EADEYD C
Sbjct: 115 TTTAGMATWILEQCGYKPGFVIGG-VPGNFEVSAHLGESDFFVIEADEYD-CAFFDKRSK 172
Query: 245 FLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLV 290
F+ P ++ NL+++H DIF+D A++ F ++ + G ++
Sbjct: 173 FVHYCPRTLILNNLEFDHADIFDDLKAIQKQFHHLVRIVPGQGRII 218
Score = 166 (63.5 bits), Expect = 4.7e-27, Sum P(2) = 4.7e-27
Identities = 46/148 (31%), Positives = 72/148 (48%)
Query: 345 WYAESVCPNVQGGSDYILCERGRPLAQISLQIPGVHNVLNSLAVIATVLTLIGDKRQSHE 404
W A+ + + S++ + G + ++ + G HN+ N L IA R
Sbjct: 247 WQAKKLTTDA---SEWEVLLDGEKVGEVKWSLVGEHNMHNGLMAIAAA-------RHVGV 296
Query: 405 SIACLKLPLSKFMGVSRRFDLIGTIYGCHIYDDFAHHPTEVRAVLQAARQRFPNKA-LIA 463
+ A L F+ RR +L G G +YDDFAHHPT + A L A R + A +IA
Sbjct: 297 APADAANALGSFINARRRLELRGEANGVTVYDDFAHHPTAILATLAALRGKVGGTARIIA 356
Query: 464 VFQPHTYS-RLVVLKDDFANALSEADQV 490
V +P + + ++ + KDD A +L AD+V
Sbjct: 357 VLEPRSNTMKMGICKDDLAPSLGRADEV 384
>TIGR_CMR|CPS_0405 [details] [associations]
symbol:CPS_0405
"UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelat
e ligase" species:167879 "Colwellia psychrerythraea 34H"
[GO:0009252 "peptidoglycan biosynthetic process" evidence=ISS]
[GO:0016881 "acid-amino acid ligase activity" evidence=ISS]
InterPro:IPR000713 InterPro:IPR004101 InterPro:IPR005757
InterPro:IPR013221 Pfam:PF01225 Pfam:PF02875 Pfam:PF08245
InterPro:IPR016040 GO:GO:0005524 Gene3D:3.40.50.720 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0016881 GO:GO:0009252
Gene3D:3.40.1190.10 Gene3D:3.90.190.20 SUPFAM:SSF53244
SUPFAM:SSF53623 eggNOG:COG0773 HOGENOM:HOG000256032 KO:K02558
OMA:PYTSGPQ PANTHER:PTHR23135:SF8 TIGRFAMs:TIGR01081
RefSeq:YP_267163.1 STRING:Q489V1 DNASU:3520268 GeneID:3520268
KEGG:cps:CPS_0405 PATRIC:21464173
BioCyc:CPSY167879:GI48-500-MONOMER Uniprot:Q489V1
Length = 479
Score = 237 (88.5 bits), Expect = 5.4e-17, P = 5.4e-17
Identities = 110/446 (24%), Positives = 186/446 (41%)
Query: 73 NRKGWIHFVGIXXXXXXXXXXXXXXQGFEVSGSDL-VWSSYMEGLLEAGANLHIGHSVSN 131
N+ +H +GI GF+VSGSD V+ L + G L G+ V N
Sbjct: 3 NKIQHLHILGICGTFMGGIAAIAKQLGFKVSGSDANVYPPMSTQLEQLGIELMSGYQVDN 62
Query: 132 IQGNDGSRFPNAVVASSAIPQDNVEILHAKSVGVPIYKRDYWLAK--LTEKYNLIAVSGS 189
+ + V+ +A+ + N + + +P WL + L +++ ++AVSG+
Sbjct: 63 FSDDI-----DLVIVGNAMSRGNPMVEYMLDRNIPYTSGPQWLLENVLKDRW-VLAVSGT 116
Query: 190 HGKSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLG-- 247
HGK+TT+SMLA++L+ ++G VPQ S G FV+EADEYD F
Sbjct: 117 HGKTTTSSMLAWILEYAHMSPGFLIGG-VPQNFSSSARLGDTPFFVIEADEYDSAFFDKR 175
Query: 248 -----LSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLL 302
P V+ NL+++H DIF D ++ F ++ + G ++ + + L
Sbjct: 176 SKFVHYRPRTLVINNLEFDHGDIFNDLSDIQKQFHHLIRMVPSNGLILSPANEEAITETL 235
Query: 303 DQIKQDTGLKYSGGVVS-NQSSDLWGQGHDYKIITYGFSSFNDWYAESVCPNVQGGSDYI 361
+ T ++S G + ++ SD W E + N QG S++I
Sbjct: 236 -AMGCWTPTEFSNGELQQDEPSDA------------------GWQVEKL--NAQG-SEFI 273
Query: 362 LCERGRPLAQISLQIPGVHNVLNSLAVIATVLTLIGDKRQSHESIACLKLPLSKF--MGV 419
+ G+ + + G N+ N++ IA S E++A +F G+
Sbjct: 274 VKFNGKEQGVVKWDLIGDFNIDNAVMAIAAARHAGVPSAVSIEALAEFINTKRRFELRGI 333
Query: 420 SRRFDLIGTIYGCHIYDDFAHHPTEVRAVL--QAARQRFPNKALIAVFQPHTYS-RLVVL 476
+ H A VRA L Q + Q + + AV +P + + R V
Sbjct: 334 VNNISVYDDF--AHHPTAIAKTLAGVRAKLSQQESEQEQVGR-IFAVLEPRSNTMRSGVH 390
Query: 477 KDDFANALSEADQVVV-SAVLVFWLI 501
K+ +L +ADQV + V W +
Sbjct: 391 KESLPKSLIDADQVFIYQGEQVTWSV 416
>UNIPROTKB|Q97RU8 [details] [associations]
symbol:murD "UDP-N-acetylmuramoylalanine--D-glutamate
ligase" species:170187 "Streptococcus pneumoniae TIGR4" [GO:0005515
"protein binding" evidence=IPI] HAMAP:MF_00639 InterPro:IPR004101
InterPro:IPR005762 InterPro:IPR013221 Pfam:PF02875 Pfam:PF08245
UniPathway:UPA00219 InterPro:IPR016040 GO:GO:0005524 GO:GO:0005737
GO:GO:0051301 GO:GO:0008360 Gene3D:3.40.50.720 GO:GO:0007049
EMBL:AE005672 GenomeReviews:AE005672_GR GO:GO:0009252
Gene3D:3.40.1190.10 Gene3D:3.90.190.20 SUPFAM:SSF53244
SUPFAM:SSF53623 eggNOG:COG0771 HOGENOM:HOG000049428 KO:K01925
OMA:RCGELDV ProtClustDB:PRK02472 GO:GO:0008764
PANTHER:PTHR23135:SF2 TIGRFAMs:TIGR01087 PIR:H95079
RefSeq:NP_345193.1 ProteinModelPortal:Q97RU8
EnsemblBacteria:EBSTRT00000027216 GeneID:930638 KEGG:spn:SP_0688
PATRIC:19705737 BindingDB:Q97RU8 ChEMBL:CHEMBL4359 Uniprot:Q97RU8
Length = 450
Score = 117 (46.2 bits), Expect = 6.4e-08, Sum P(3) = 6.4e-08
Identities = 36/126 (28%), Positives = 65/126 (51%)
Query: 144 VVASSAIPQDNVEILHAKSVGVPIYKRDYWLAKLTEKYNLIAVSGSHGKSTTASMLAYVL 203
+V + IP +N I A + G+P+ + LA L + +I ++GS+GK+TT +M+ VL
Sbjct: 76 MVKNPGIPYNNPMIEKALAKGIPVLT-EVELAYLISEAPIIGITGSNGKTTTTTMIGEVL 134
Query: 204 KAMGDDLTAIVGAHVPQFPDGSIFY-GGGKN-FVLEADEYDGCFLGLS---PSVAVVTNL 258
A G ++ ++ +P + K+ V+E + +G+ P +AV+TNL
Sbjct: 135 TAAGQH--GLLSGNIG-YPASQVAQIASDKDTLVMELSSFQ--LMGVQEFHPEIAVITNL 189
Query: 259 DWEHVD 264
H+D
Sbjct: 190 MPTHID 195
Score = 86 (35.3 bits), Expect = 6.4e-08, Sum P(3) = 6.4e-08
Identities = 31/96 (32%), Positives = 43/96 (44%)
Query: 369 LAQISLQIPGVHNVLNSLAVIATVLTLIGDKRQSHESIACLKLPLSKFMGVSRRFDLIGT 428
+A + +PG HNV N+LA IA V L Q+ +K LS F GV R +
Sbjct: 267 MAANEIGVPGSHNVENALATIA-VAKLRDVDNQT------IKETLSAFGGVKHRLQFVDD 319
Query: 429 IYGCHIYDDFAHHPTEVRAVLQAARQRFPNKALIAV 464
I G Y+D T + A Q A F N ++ +
Sbjct: 320 IKGVKFYND--SKSTNILAT-QKALSGFDNSKVVLI 352
Score = 37 (18.1 bits), Expect = 6.4e-08, Sum P(3) = 6.4e-08
Identities = 12/41 (29%), Positives = 18/41 (43%)
Query: 4 LVASVSNSLHSPGSFLEKIETYFFGNIPLSFKSNRTAPSIL 44
LV ++ S S L+K+ N F+ N A S+L
Sbjct: 13 LVLGLAKSGESAARLLDKLGAIVTVNDGKPFEDNPAAQSLL 53
>TIGR_CMR|GSU_3071 [details] [associations]
symbol:GSU_3071 "UDP-N-acetylmuramoylalanine--D-glutamate
ligase" species:243231 "Geobacter sulfurreducens PCA" [GO:0008764
"UDP-N-acetylmuramoylalanine-D-glutamate ligase activity"
evidence=ISS] [GO:0009252 "peptidoglycan biosynthetic process"
evidence=ISS] HAMAP:MF_00639 InterPro:IPR004101 InterPro:IPR005762
InterPro:IPR013221 Pfam:PF02875 Pfam:PF08245 UniPathway:UPA00219
InterPro:IPR016040 GO:GO:0005524 GO:GO:0005737 GO:GO:0051301
GO:GO:0008360 Gene3D:3.40.50.720 GO:GO:0007049 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0009252 Gene3D:3.40.1190.10
Gene3D:3.90.190.20 SUPFAM:SSF53244 SUPFAM:SSF53623 eggNOG:COG0771
HOGENOM:HOG000049428 KO:K01925 OMA:RCGELDV GO:GO:0008764
PANTHER:PTHR23135:SF2 TIGRFAMs:TIGR01087 RefSeq:NP_954113.1
ProteinModelPortal:Q748D4 GeneID:2686310 KEGG:gsu:GSU3071
PATRIC:22028993 ProtClustDB:CLSK829090
BioCyc:GSUL243231:GH27-3020-MONOMER Uniprot:Q748D4
Length = 452
Score = 114 (45.2 bits), Expect = 9.0e-07, Sum P(2) = 9.0e-07
Identities = 52/190 (27%), Positives = 89/190 (46%)
Query: 98 QGFEVSGSDLVWSSYMEGLLEAGANLHIGHSVSNIQG-NDGSRFPNA--VVASSAIPQDN 154
QG V+ +DL + + G LE A GH VS + G +D + F A VV S +PQ++
Sbjct: 27 QGARVTVTDLRDEAALAGPLEQLA----GHPVSYVLGRHDEADFAAAETVVVSPGVPQES 82
Query: 155 VEILHAKSVGVPIYKRDYWLAKLTEKYNLIAVSGSHGKSTTASMLAYVLKAMGDDLTAIV 214
+ A+ G + + LA L+A++G++GK+TT ++ + G V
Sbjct: 83 PYLQAARRAGREVIT-EIELASRFITAPLVAITGTNGKTTTTTLTGELFAGCG--FRTFV 139
Query: 215 GAHVPQFPDGSIFYGGGK--NFVLEADEYDGCFL-GLSPSVAVVTNLDWEHVDIF----E 267
G ++ P + G V+E + ++ P+VAV+ N+ +H+D + E
Sbjct: 140 GGNIGN-PLIELVETGAAVDRVVVEISSFQLEWIRSFRPTVAVLLNITEDHLDRYATYQE 198
Query: 268 DEDAVKSIFR 277
DA IF+
Sbjct: 199 YIDAKARIFK 208
Score = 76 (31.8 bits), Expect = 9.0e-07, Sum P(2) = 9.0e-07
Identities = 27/89 (30%), Positives = 45/89 (50%)
Query: 375 QIPGVHNVLNSLAVIATVLTLIGDKRQSHESIACLKLPLSKFMGVSRRFDLIGTIYGCHI 434
+I GVHN+ N +A +A L L D + ++AC++ F G+ R +L+ + G
Sbjct: 273 RITGVHNIENIMASLAAALLLGCD---ADRALACVEA----FGGLPHRMELVRELNGVRY 325
Query: 435 YDDFAHHPTEVRAVLQAARQRFPNKALIA 463
++D T V +V + A F + LIA
Sbjct: 326 FED--SKATNVGSV-EKALASFNDITLIA 351
>TIGR_CMR|CHY_2074 [details] [associations]
symbol:CHY_2074 "UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate ligase" species:246194 "Carboxydothermus
hydrogenoformans Z-2901" [GO:0009252 "peptidoglycan biosynthetic
process" evidence=ISS] [GO:0016881 "acid-amino acid ligase
activity" evidence=ISS] HAMAP:MF_00208 InterPro:IPR000713
InterPro:IPR004101 InterPro:IPR005761 InterPro:IPR013221
InterPro:IPR018109 Pfam:PF01225 Pfam:PF02875 Pfam:PF08245
PROSITE:PS01011 UniPathway:UPA00219 GO:GO:0005524 GO:GO:0005737
GO:GO:0051301 GO:GO:0008360 EMBL:CP000141 GenomeReviews:CP000141_GR
GO:GO:0007049 GO:GO:0009252 Gene3D:3.40.1190.10 Gene3D:3.90.190.20
SUPFAM:SSF53244 SUPFAM:SSF53623 GO:GO:0004326 HOGENOM:HOG000268118
eggNOG:COG0769 KO:K01928 GO:GO:0008765 TIGRFAMs:TIGR01085
OMA:HTMEEYA GO:GO:0046901 RefSeq:YP_360893.1
ProteinModelPortal:Q3AAE1 STRING:Q3AAE1 GeneID:3727837
KEGG:chy:CHY_2074 PATRIC:21277229
BioCyc:CHYD246194:GJCN-2073-MONOMER Uniprot:Q3AAE1
Length = 492
Score = 110 (43.8 bits), Expect = 1.7e-06, Sum P(3) = 1.7e-06
Identities = 48/156 (30%), Positives = 74/156 (47%)
Query: 316 GVVSNQSSDLWGQ------GHDYKIITYGFSSFNDWYAESVCPNVQGGSDYILCERGRPL 369
GV++ D +GQ H + +TYG D A++V G+ + LC +
Sbjct: 237 GVINKD--DFYGQRILKEVAHPF--VTYGIKEQADITAKNV-ELTNSGTAFTLCYQEEEY 291
Query: 370 AQISLQIPGVHNVLNSLAVIATVLTLIGDKRQSHESIACLKLPLSKFMGVSRRFDLIGTI 429
+ +++ G+ NV N LA + T+LTL G S I LPL V RF+LI
Sbjct: 292 P-VKVKLLGLFNVYNILAAVGTLLTL-GF---SLPDIV-KNLPLLN--PVPGRFELIDEG 343
Query: 430 YGCHIYDDFAHHPTEVRAVLQAARQRFPNKALIAVF 465
+ D+AH P + +L++AR P + +IAVF
Sbjct: 344 QDFAVIVDYAHTPDGLENILKSARAITPGR-VIAVF 378
Score = 66 (28.3 bits), Expect = 1.7e-06, Sum P(3) = 1.7e-06
Identities = 13/38 (34%), Positives = 26/38 (68%)
Query: 178 TEKYNLIAVSGSHGKSTTASMLAYVLKAMGDDLTAIVG 215
TEK ++I V+G++GK+T ++ +L++ G T ++G
Sbjct: 103 TEKISVIGVTGTNGKTTVTHLVTSLLESFGYK-TGLIG 139
Score = 52 (23.4 bits), Expect = 1.7e-06, Sum P(3) = 1.7e-06
Identities = 18/64 (28%), Positives = 30/64 (46%)
Query: 246 LGLSPSVAVVTNLDWEHVDIFEDED----AVKSIFRRFLKQIRVGGHLVICGDSQCARSL 301
LG+ V TNL +H+D E + A K +F+ +Q + G VI D + +
Sbjct: 192 LGIDFKTGVFTNLTQDHLDFHESMENYFNAKKELFKILAEQKALPG--VINKDDFYGQRI 249
Query: 302 LDQI 305
L ++
Sbjct: 250 LKEV 253
>TIGR_CMR|BA_4053 [details] [associations]
symbol:BA_4053
"UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase"
species:198094 "Bacillus anthracis str. Ames" [GO:0009252
"peptidoglycan biosynthetic process" evidence=ISS] [GO:0016881
"acid-amino acid ligase activity" evidence=ISS] HAMAP:MF_00208
InterPro:IPR000713 InterPro:IPR004101 InterPro:IPR005761
InterPro:IPR013221 Pfam:PF01225 Pfam:PF02875 Pfam:PF08245
UniPathway:UPA00219 GO:GO:0005524 GO:GO:0005737 GO:GO:0051301
GO:GO:0008360 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0007049 GO:GO:0009252
Gene3D:3.40.1190.10 Gene3D:3.90.190.20 SUPFAM:SSF53244
SUPFAM:SSF53623 HOGENOM:HOG000268118 RefSeq:NP_846293.1
RefSeq:YP_020695.1 RefSeq:YP_030016.1 ProteinModelPortal:Q81WC7
DNASU:1086243 EnsemblBacteria:EBBACT00000008767
EnsemblBacteria:EBBACT00000016254 EnsemblBacteria:EBBACT00000023692
GeneID:1086243 GeneID:2815156 GeneID:2848185 KEGG:ban:BA_4053
KEGG:bar:GBAA_4053 KEGG:bat:BAS3765 eggNOG:COG0769 KO:K01928
OMA:MAKDNGA ProtClustDB:PRK00139
BioCyc:BANT260799:GJAJ-3823-MONOMER
BioCyc:BANT261594:GJ7F-3941-MONOMER GO:GO:0008765
TIGRFAMs:TIGR01085 Uniprot:Q81WC7
Length = 491
Score = 95 (38.5 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 32/121 (26%), Positives = 59/121 (48%)
Query: 334 IITYGFSSFNDWYAESVCPNVQGGSDYILCERGRPLAQISLQIPGVHNVLNSLAVIATVL 393
++TYG + +D A+ + GG+ + L + +++++ G NV N LA AT
Sbjct: 256 VVTYGIDTTSDVMAKDIAMT-SGGTTFTLVTPYESV-NVTMKLIGKFNVYNVLA--ATAA 311
Query: 394 TLIGDKRQSHESIACLKLPLSKFMGVSRRFDLIGTIYGCHIYDDFAHHPTEVRAVLQAAR 453
L+ S E+I + + + GV RF+++ + D+AH P + VL+ A+
Sbjct: 312 GLVSGV--SLETIIDV---IKELAGVPGRFEVVDGGQNYTVIVDYAHTPDSLENVLKTAK 366
Query: 454 Q 454
Q
Sbjct: 367 Q 367
Score = 86 (35.3 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 21/73 (28%), Positives = 40/73 (54%)
Query: 143 AVVASSAIPQDNVEILHAKSVGVPIYKRDYWLAKLTEKYNLIAVSGSHGKSTTASMLAYV 202
A+VA I D +L + DY+ + T K +LI ++G++GK+TT+ ++ +
Sbjct: 63 AIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTTSHIMDEI 122
Query: 203 LKAMGDDLTAIVG 215
++A G T ++G
Sbjct: 123 MRAHGHK-TGLIG 134
>TIGR_CMR|CBU_0124 [details] [associations]
symbol:CBU_0124
"UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alany
l-D-alanyl ligase" species:227377 "Coxiella burnetii RSA 493"
[GO:0009252 "peptidoglycan biosynthetic process" evidence=ISS]
[GO:0016881 "acid-amino acid ligase activity" evidence=ISS]
InterPro:IPR000713 InterPro:IPR004101 InterPro:IPR005863
InterPro:IPR013221 Pfam:PF01225 Pfam:PF02875 Pfam:PF08245
UniPathway:UPA00219 GO:GO:0005524 GO:GO:0005737 GO:GO:0051301
GO:GO:0008360 GO:GO:0007049 EMBL:AE016828 GenomeReviews:AE016828_GR
GO:GO:0009252 Gene3D:3.40.1190.10 Gene3D:3.90.190.20
SUPFAM:SSF53244 SUPFAM:SSF53623 HOGENOM:HOG000268120 KO:K01929
OMA:GNRNNEI GO:GO:0047480 GO:GO:0008766 PANTHER:PTHR23135:SF3
TIGRFAMs:TIGR01143 HSSP:P11880 RefSeq:NP_819174.1
ProteinModelPortal:Q83F27 GeneID:1207995 KEGG:cbu:CBU_0124
PATRIC:17928933 ProtClustDB:CLSK913851
BioCyc:CBUR227377:GJ7S-129-MONOMER Uniprot:Q83F27
Length = 446
Score = 100 (40.3 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 43/160 (26%), Positives = 71/160 (44%)
Query: 310 GLKYSG-GVVSNQS--SDLWGQ-GHDYKIITYGFSSFNDWYAESVCPNVQGGSDYILCER 365
GL G V++N ++ W + H +II++G + D A+++ N G + L
Sbjct: 206 GLSSDGTAVINNDDHFAEFWRRLAHSRRIISFGINQPADVMAKNITLNSDGRPAFQLV-- 263
Query: 366 GRPLAQISLQIP--GVHNVLNSLAVIATVLTLIGDKRQSHESIACLKLPLSKFMGVSRRF 423
P Q+ +Q+P GVHNV N+LA A ++ S ++I K L + V R
Sbjct: 264 -LPTGQLEIQLPLIGVHNVANALAAAAAAYA----QQLSTDAI---KAGLESVVPVKGRL 315
Query: 424 DLIGTIYGCHIYDD-FAHHPTEVRAVLQAARQRFPNKALI 462
G I DD + +P V A + +R + L+
Sbjct: 316 VEQKGYRGAIIIDDSYNANPLSVSAAIAVLAKRPGHSVLV 355
Score = 67 (28.6 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 35/122 (28%), Positives = 56/122 (45%)
Query: 184 IAVSGSHGKSTTASMLAYVLKAMGDDLTAIVGAHVP-QFPDGSIFYGGGKNF-VLEAD-E 240
I V+GS GK+TT ++LA V + G+ L + + P + ++ VLE
Sbjct: 101 IVVTGSCGKTTTRALLASVFRQCGNVLASEKSFNNNIGVPLTLLRLRPDHHYAVLELGAN 160
Query: 241 YDG--CFL-GLS-PSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQ 296
+ G +L GL+ PSVA++TN H++ F + V + + G VI D
Sbjct: 161 HPGEITYLTGLAKPSVAIITNAGPVHLEGFGSLEGVAKAKGEIFEGLSSDGTAVINNDDH 220
Query: 297 CA 298
A
Sbjct: 221 FA 222
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.322 0.137 0.414 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 538 524 0.00090 119 3 11 22 0.36 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 22
No. of states in DFA: 622 (66 KB)
Total size of DFA: 313 KB (2160 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 38.95u 0.18s 39.13t Elapsed: 00:00:01
Total cpu time: 38.95u 0.18s 39.13t Elapsed: 00:00:01
Start: Mon May 20 18:26:27 2013 End: Mon May 20 18:26:28 2013