Query 009293
Match_columns 538
No_of_seqs 354 out of 2452
Neff 7.9
Searched_HMMs 46136
Date Thu Mar 28 22:47:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009293.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009293hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0773 MurC UDP-N-acetylmuram 100.0 5.7E-74 1.2E-78 590.6 47.3 402 76-516 8-412 (459)
2 PRK00421 murC UDP-N-acetylmura 100.0 3.4E-65 7.5E-70 549.2 49.8 400 76-515 8-408 (461)
3 TIGR01082 murC UDP-N-acetylmur 100.0 1.3E-63 2.9E-68 535.0 48.8 399 77-515 1-402 (448)
4 PRK14573 bifunctional D-alanyl 100.0 3.5E-60 7.7E-65 541.0 48.8 394 76-515 5-400 (809)
5 TIGR01081 mpl UDP-N-acetylmura 100.0 1.8E-59 4E-64 503.0 46.8 378 77-496 1-388 (448)
6 TIGR01087 murD UDP-N-acetylmur 100.0 1.6E-55 3.5E-60 471.0 38.6 357 77-495 1-366 (433)
7 PRK03803 murD UDP-N-acetylmura 100.0 1.4E-54 3E-59 465.5 41.6 365 76-496 7-380 (448)
8 PRK04663 murD UDP-N-acetylmura 100.0 5E-54 1.1E-58 459.5 39.5 362 76-497 8-375 (438)
9 COG0771 MurD UDP-N-acetylmuram 100.0 3.3E-54 7.1E-59 449.4 35.4 362 76-496 8-379 (448)
10 PRK01368 murD UDP-N-acetylmura 100.0 3.4E-52 7.4E-57 445.3 41.5 363 76-492 7-372 (454)
11 PRK01710 murD UDP-N-acetylmura 100.0 1.9E-52 4.2E-57 449.5 38.8 361 76-497 15-386 (458)
12 PRK01390 murD UDP-N-acetylmura 100.0 8.1E-52 1.8E-56 445.6 41.6 363 76-496 10-388 (460)
13 PRK03806 murD UDP-N-acetylmura 100.0 6E-52 1.3E-56 444.0 39.9 360 76-495 7-372 (438)
14 PRK00141 murD UDP-N-acetylmura 100.0 6.2E-52 1.3E-56 446.7 38.9 362 76-495 16-390 (473)
15 PRK04308 murD UDP-N-acetylmura 100.0 8.6E-52 1.9E-56 443.6 38.6 363 76-497 6-379 (445)
16 PRK02705 murD UDP-N-acetylmura 100.0 9.8E-52 2.1E-56 445.1 38.9 365 77-496 2-384 (459)
17 PRK02006 murD UDP-N-acetylmura 100.0 1.1E-51 2.4E-56 448.3 39.4 371 76-496 8-423 (498)
18 PRK04690 murD UDP-N-acetylmura 100.0 1.5E-51 3.3E-56 442.8 38.8 363 76-499 9-386 (468)
19 PRK03369 murD UDP-N-acetylmura 100.0 1.8E-51 3.8E-56 444.5 38.0 359 76-496 13-385 (488)
20 PRK02472 murD UDP-N-acetylmura 100.0 5E-51 1.1E-55 438.2 40.4 364 76-496 6-377 (447)
21 PRK01438 murD UDP-N-acetylmura 100.0 1.1E-50 2.5E-55 439.0 39.6 370 76-496 17-402 (480)
22 PRK14106 murD UDP-N-acetylmura 100.0 1.6E-49 3.5E-54 426.8 40.5 366 76-495 6-381 (450)
23 PRK10773 murF UDP-N-acetylmura 100.0 2.5E-49 5.5E-54 424.6 30.8 376 47-496 4-394 (453)
24 PRK14093 UDP-N-acetylmuramoyla 100.0 3.5E-49 7.5E-54 426.2 30.4 383 47-496 7-410 (479)
25 PRK00139 murE UDP-N-acetylmura 100.0 7.8E-49 1.7E-53 421.9 32.2 365 44-499 1-389 (460)
26 TIGR01143 murF UDP-N-acetylmur 100.0 2.7E-47 5.8E-52 405.3 37.3 337 98-497 16-366 (417)
27 TIGR01085 murE UDP-N-acetylmur 100.0 5.8E-46 1.2E-50 400.5 33.6 364 68-499 4-398 (464)
28 PRK11929 putative bifunctional 100.0 2.6E-46 5.6E-51 435.5 32.8 368 66-500 27-425 (958)
29 COG0770 MurF UDP-N-acetylmuram 100.0 5.4E-46 1.2E-50 391.5 30.4 380 47-496 3-396 (451)
30 PRK03815 murD UDP-N-acetylmura 100.0 4.5E-45 9.7E-50 384.0 32.7 330 77-496 2-334 (401)
31 PRK14022 UDP-N-acetylmuramoyla 100.0 3.5E-45 7.7E-50 395.6 31.3 349 66-499 32-407 (481)
32 PRK11930 putative bifunctional 100.0 8.3E-44 1.8E-48 407.4 34.0 384 47-496 3-400 (822)
33 PRK00683 murD UDP-N-acetylmura 100.0 6.5E-43 1.4E-47 371.7 30.8 335 76-496 4-348 (418)
34 PRK11929 putative bifunctional 100.0 3.3E-42 7.1E-47 401.2 37.9 362 66-496 524-904 (958)
35 COG0769 MurE UDP-N-acetylmuram 100.0 3E-42 6.6E-47 367.1 29.4 346 98-500 30-400 (475)
36 TIGR01499 folC folylpolyglutam 100.0 2.3E-40 5.1E-45 350.0 28.6 287 172-499 9-343 (397)
37 PLN02913 dihydrofolate synthet 100.0 5.4E-38 1.2E-42 339.4 32.0 301 171-514 65-450 (510)
38 TIGR02068 cya_phycin_syn cyano 100.0 1.4E-37 3.1E-42 355.0 33.7 303 177-514 475-812 (864)
39 COG0285 FolC Folylpolyglutamat 100.0 8.8E-37 1.9E-41 317.9 30.6 290 171-511 34-374 (427)
40 PRK10846 bifunctional folylpol 100.0 2.5E-36 5.5E-41 320.7 30.9 289 171-514 39-372 (416)
41 PLN02881 tetrahydrofolylpolygl 100.0 6.1E-34 1.3E-38 303.5 31.4 306 172-526 50-457 (530)
42 PF08245 Mur_ligase_M: Mur lig 100.0 9.8E-29 2.1E-33 234.5 16.4 178 186-392 1-188 (188)
43 PRK14016 cyanophycin synthetas 100.0 2.8E-28 6.1E-33 273.8 15.5 245 147-425 446-726 (727)
44 KOG2525 Folylpolyglutamate syn 99.9 1.2E-26 2.6E-31 238.3 22.7 274 172-495 61-406 (496)
45 PF02875 Mur_ligase_C: Mur lig 99.5 4.6E-14 1E-18 117.7 9.5 81 419-499 1-84 (91)
46 PF01225 Mur_ligase: Mur ligas 97.9 7.3E-05 1.6E-09 60.9 9.4 79 77-178 1-79 (83)
47 TIGR01470 cysG_Nterm siroheme 97.5 0.00024 5.1E-09 68.3 7.2 125 70-204 6-141 (205)
48 PRK06718 precorrin-2 dehydroge 95.4 0.041 8.9E-07 52.8 6.8 125 70-204 7-141 (202)
49 PF03721 UDPG_MGDP_dh_N: UDP-g 95.0 0.1 2.2E-06 49.3 8.1 115 77-208 2-140 (185)
50 PRK04148 hypothetical protein; 95.0 0.12 2.6E-06 46.0 8.0 88 76-169 18-107 (134)
51 cd01080 NAD_bind_m-THF_DH_Cycl 94.0 0.34 7.4E-06 45.0 8.9 117 76-206 45-167 (168)
52 PRK06719 precorrin-2 dehydroge 93.5 0.21 4.5E-06 45.9 6.5 122 70-204 10-141 (157)
53 COG0287 TyrA Prephenate dehydr 93.3 0.16 3.4E-06 51.3 5.9 68 76-150 4-74 (279)
54 PF02882 THF_DHG_CYH_C: Tetrah 93.2 0.34 7.3E-06 44.6 7.3 119 76-206 37-157 (160)
55 PRK08306 dipicolinate synthase 92.9 0.33 7.1E-06 49.4 7.7 66 75-147 152-217 (296)
56 COG0190 FolD 5,10-methylene-te 92.9 0.8 1.7E-05 45.8 10.0 120 76-206 157-276 (283)
57 PRK11064 wecC UDP-N-acetyl-D-m 92.8 1.7 3.7E-05 46.5 13.2 108 76-205 4-136 (415)
58 COG1703 ArgK Putative periplas 92.7 1.4 3E-05 44.5 11.3 34 180-213 50-85 (323)
59 PRK12779 putative bifunctional 92.0 1.4 3.1E-05 52.0 12.3 75 75-150 306-402 (944)
60 PF03446 NAD_binding_2: NAD bi 91.6 0.82 1.8E-05 42.0 7.9 113 76-209 2-114 (163)
61 PRK09853 putative selenate red 91.5 1.3 2.7E-05 52.3 11.0 76 75-152 539-635 (1019)
62 TIGR01505 tartro_sem_red 2-hyd 91.4 1.3 2.8E-05 44.8 10.0 113 77-209 1-113 (291)
63 PRK07417 arogenate dehydrogena 91.3 1.5 3.2E-05 44.2 10.1 64 77-148 2-65 (279)
64 COG2084 MmsB 3-hydroxyisobutyr 90.7 1.1 2.4E-05 45.1 8.4 114 77-209 2-115 (286)
65 TIGR00872 gnd_rel 6-phosphoglu 90.6 1.8 3.9E-05 44.0 10.1 112 77-209 2-113 (298)
66 PRK07819 3-hydroxybutyryl-CoA 90.6 1.7 3.7E-05 44.0 9.8 36 73-109 3-38 (286)
67 TIGR03172 probable selenium-de 90.4 0.34 7.5E-06 47.3 4.3 36 183-218 1-36 (232)
68 PRK05808 3-hydroxybutyryl-CoA 90.2 1.6 3.5E-05 43.9 9.3 33 76-109 4-36 (282)
69 COG0677 WecC UDP-N-acetyl-D-ma 90.0 4.7 0.0001 42.3 12.3 121 72-210 6-151 (436)
70 PRK09599 6-phosphogluconate de 89.9 3.2 7E-05 42.2 11.3 113 77-209 2-114 (301)
71 TIGR02853 spore_dpaA dipicolin 89.8 1.5 3.2E-05 44.5 8.6 66 75-147 151-216 (287)
72 PRK14194 bifunctional 5,10-met 89.8 2.5 5.3E-05 43.0 10.0 118 75-206 159-282 (301)
73 PRK11559 garR tartronate semia 89.7 2.5 5.4E-05 42.8 10.3 113 77-209 4-116 (296)
74 PF01488 Shikimate_DH: Shikima 89.6 0.39 8.4E-06 42.8 3.7 37 69-108 8-45 (135)
75 PRK14189 bifunctional 5,10-met 89.5 2.2 4.9E-05 43.0 9.5 118 76-206 159-278 (285)
76 TIGR03026 NDP-sugDHase nucleot 89.5 4.7 0.0001 43.0 12.6 111 77-205 2-137 (411)
77 PTZ00142 6-phosphogluconate de 89.4 3.2 7E-05 45.1 11.3 32 77-109 3-34 (470)
78 PRK15461 NADH-dependent gamma- 89.3 2.5 5.4E-05 42.9 9.9 113 77-209 3-115 (296)
79 PRK14175 bifunctional 5,10-met 89.1 2.4 5.2E-05 42.8 9.3 118 75-206 158-278 (286)
80 cd05212 NAD_bind_m-THF_DH_Cycl 89.0 4 8.7E-05 36.6 9.9 109 75-206 28-139 (140)
81 PRK06035 3-hydroxyacyl-CoA deh 88.9 3 6.4E-05 42.2 10.1 33 76-109 4-36 (291)
82 PRK14179 bifunctional 5,10-met 88.8 2.7 5.9E-05 42.4 9.5 118 76-206 159-278 (284)
83 PRK14191 bifunctional 5,10-met 88.7 3.4 7.3E-05 41.7 10.0 118 76-206 158-277 (285)
84 PRK15182 Vi polysaccharide bio 88.5 4 8.7E-05 43.8 11.2 117 75-208 6-141 (425)
85 PF10727 Rossmann-like: Rossma 88.4 0.83 1.8E-05 40.3 5.0 69 72-148 7-76 (127)
86 TIGR00873 gnd 6-phosphoglucona 88.3 4.4 9.5E-05 44.0 11.4 114 78-209 2-118 (467)
87 COG2085 Predicted dinucleotide 88.1 2.8 6.2E-05 40.1 8.6 65 76-147 2-67 (211)
88 PLN02545 3-hydroxybutyryl-CoA 87.9 3.1 6.7E-05 42.1 9.5 33 76-109 5-37 (295)
89 COG0569 TrkA K+ transport syst 87.8 1.4 2.9E-05 43.0 6.5 76 77-155 2-81 (225)
90 PF13241 NAD_binding_7: Putati 87.6 1.3 2.9E-05 37.4 5.5 80 76-167 8-88 (103)
91 PLN02350 phosphogluconate dehy 87.5 5.6 0.00012 43.5 11.6 116 76-209 7-127 (493)
92 PF13450 NAD_binding_8: NAD(P) 87.5 0.62 1.3E-05 36.2 3.2 28 80-108 1-28 (68)
93 cd01075 NAD_bind_Leu_Phe_Val_D 87.1 1.7 3.7E-05 41.5 6.7 105 76-209 29-134 (200)
94 COG0132 BioD Dethiobiotin synt 87.0 0.89 1.9E-05 44.1 4.6 32 181-212 2-36 (223)
95 PRK12814 putative NADPH-depend 86.8 9.9 0.00021 43.2 13.6 75 76-151 194-289 (652)
96 TIGR00507 aroE shikimate 5-deh 86.7 4.5 9.8E-05 40.4 9.8 33 75-108 117-149 (270)
97 PRK08229 2-dehydropantoate 2-r 86.6 4.3 9.4E-05 41.9 9.9 44 77-123 4-47 (341)
98 PRK14176 bifunctional 5,10-met 86.5 3.2 6.9E-05 41.9 8.4 116 76-206 165-283 (287)
99 PRK12490 6-phosphogluconate de 86.4 6.6 0.00014 39.9 10.9 112 77-208 2-113 (299)
100 cd01983 Fer4_NifH The Fer4_Nif 86.3 1.1 2.3E-05 36.2 4.2 29 184-212 2-32 (99)
101 TIGR01316 gltA glutamate synth 86.2 5.5 0.00012 43.0 10.8 75 75-150 133-228 (449)
102 PRK07530 3-hydroxybutyryl-CoA 86.1 4.9 0.00011 40.6 9.8 33 76-109 5-37 (292)
103 PLN02516 methylenetetrahydrofo 86.0 3.8 8.2E-05 41.6 8.7 123 76-206 168-293 (299)
104 cd05291 HicDH_like L-2-hydroxy 86.0 1.8 4E-05 44.2 6.6 71 76-153 1-81 (306)
105 PRK12771 putative glutamate sy 85.9 0.97 2.1E-05 50.4 4.9 76 76-152 138-234 (564)
106 PRK14169 bifunctional 5,10-met 85.6 4.6 9.9E-05 40.7 9.0 119 76-206 157-276 (282)
107 PRK06522 2-dehydropantoate 2-r 85.6 4.5 9.7E-05 40.9 9.2 45 77-123 2-46 (304)
108 TIGR01318 gltD_gamma_fam gluta 85.6 1.7 3.7E-05 47.2 6.5 77 75-152 141-238 (467)
109 PRK14192 bifunctional 5,10-met 85.5 2.6 5.7E-05 42.5 7.4 114 75-206 159-278 (283)
110 PRK14170 bifunctional 5,10-met 85.5 5.8 0.00013 40.0 9.6 120 75-206 157-277 (284)
111 PRK08655 prephenate dehydrogen 85.4 2.3 5E-05 45.8 7.3 64 77-148 2-66 (437)
112 PRK12809 putative oxidoreducta 85.4 1.8 3.9E-05 49.1 6.7 76 75-151 310-406 (639)
113 PRK14177 bifunctional 5,10-met 85.2 4.6 9.9E-05 40.7 8.8 115 76-206 160-275 (284)
114 cd02040 NifH NifH gene encodes 85.0 1.3 2.7E-05 44.1 4.8 32 182-213 2-35 (270)
115 PRK07502 cyclohexadienyl dehyd 84.9 3.7 8E-05 41.9 8.3 66 76-148 7-74 (307)
116 COG2403 Predicted GTPase [Gene 84.9 1.2 2.5E-05 46.1 4.4 35 180-214 125-162 (449)
117 TIGR03315 Se_ygfK putative sel 84.9 2.1 4.5E-05 50.7 7.1 76 75-152 537-633 (1012)
118 PLN02712 arogenate dehydrogena 84.9 5.9 0.00013 45.0 10.6 109 74-205 368-476 (667)
119 COG1064 AdhP Zn-dependent alco 84.9 2.7 5.9E-05 43.4 7.1 71 76-149 168-238 (339)
120 PRK14183 bifunctional 5,10-met 84.6 7.2 0.00016 39.3 9.8 119 76-206 158-277 (281)
121 PF00485 PRK: Phosphoribulokin 84.6 0.81 1.7E-05 43.3 3.0 27 183-209 1-29 (194)
122 PRK14619 NAD(P)H-dependent gly 84.5 7.2 0.00016 39.8 10.2 34 76-110 5-38 (308)
123 PRK14166 bifunctional 5,10-met 84.4 6.4 0.00014 39.7 9.4 119 76-206 158-277 (282)
124 KOG0029 Amine oxidase [Seconda 84.3 1 2.2E-05 49.3 4.0 36 71-107 11-46 (501)
125 PRK06129 3-hydroxyacyl-CoA deh 84.2 4.1 8.8E-05 41.6 8.2 32 77-109 4-35 (308)
126 PRK15453 phosphoribulokinase; 84.2 1.6 3.4E-05 44.0 5.0 31 179-209 3-35 (290)
127 PRK12769 putative oxidoreducta 84.0 1.8 4E-05 49.1 6.1 75 75-150 327-422 (654)
128 COG2894 MinD Septum formation 83.9 1.3 2.9E-05 42.6 4.0 32 182-213 3-37 (272)
129 PLN02256 arogenate dehydrogena 83.7 8.6 0.00019 39.3 10.3 65 75-148 36-100 (304)
130 PRK14190 bifunctional 5,10-met 83.5 5.4 0.00012 40.2 8.5 119 76-206 159-278 (284)
131 cd02117 NifH_like This family 83.3 1.8 3.8E-05 41.6 4.8 30 183-212 2-33 (212)
132 PRK12549 shikimate 5-dehydroge 83.0 8.7 0.00019 38.8 9.9 33 75-108 127-160 (284)
133 PRK05479 ketol-acid reductoiso 82.8 2.6 5.7E-05 43.5 6.0 72 66-148 10-81 (330)
134 PTZ00117 malate dehydrogenase; 82.7 15 0.00033 37.7 11.7 74 74-154 4-87 (319)
135 PRK13232 nifH nitrogenase redu 82.5 1.9 4.1E-05 43.2 4.9 32 182-213 2-35 (273)
136 PRK07667 uridine kinase; Provi 82.5 2.7 5.8E-05 39.8 5.7 32 180-211 16-49 (193)
137 PRK15057 UDP-glucose 6-dehydro 82.4 15 0.00032 39.0 11.7 109 77-203 2-132 (388)
138 PRK14172 bifunctional 5,10-met 82.4 10 0.00022 38.1 9.9 118 76-206 159-277 (278)
139 PF03807 F420_oxidored: NADP o 82.4 2.5 5.4E-05 34.7 4.8 64 77-148 1-69 (96)
140 PRK09310 aroDE bifunctional 3- 82.3 6.7 0.00015 42.8 9.4 33 75-108 332-364 (477)
141 PRK10792 bifunctional 5,10-met 82.3 7.1 0.00015 39.4 8.7 117 76-206 160-279 (285)
142 PRK14171 bifunctional 5,10-met 82.3 7.2 0.00016 39.4 8.8 119 76-206 160-279 (288)
143 PRK14180 bifunctional 5,10-met 82.2 8.2 0.00018 38.9 9.2 118 76-206 159-277 (282)
144 COG1763 MobB Molybdopterin-gua 82.1 2.1 4.5E-05 39.4 4.5 33 181-213 2-36 (161)
145 PRK14188 bifunctional 5,10-met 81.8 9 0.0002 38.9 9.4 125 76-207 159-286 (296)
146 PRK06567 putative bifunctional 81.8 1.4 3E-05 51.6 3.9 32 75-107 383-414 (1028)
147 PHA02518 ParA-like protein; Pr 81.2 2.3 5E-05 40.3 4.8 31 183-213 2-35 (211)
148 PRK13869 plasmid-partitioning 81.1 2.1 4.5E-05 45.7 4.7 34 180-213 120-156 (405)
149 PRK14187 bifunctional 5,10-met 81.0 11 0.00024 38.2 9.6 123 76-207 161-284 (294)
150 PLN02897 tetrahydrofolate dehy 80.7 7.1 0.00015 40.4 8.2 124 76-206 215-340 (345)
151 PRK03562 glutathione-regulated 80.7 5.7 0.00012 44.9 8.3 73 75-149 400-473 (621)
152 PRK08507 prephenate dehydrogen 80.6 10 0.00023 37.8 9.5 63 77-148 2-66 (275)
153 PF07755 DUF1611: Protein of u 80.6 3 6.4E-05 42.4 5.4 33 180-212 111-146 (301)
154 PRK00258 aroE shikimate 5-dehy 80.4 11 0.00024 37.9 9.6 33 75-108 123-156 (278)
155 PRK15059 tartronate semialdehy 80.4 13 0.00028 37.8 10.1 112 77-209 2-113 (292)
156 TIGR01692 HIBADH 3-hydroxyisob 80.2 10 0.00023 38.2 9.4 110 80-209 1-110 (288)
157 PF01408 GFO_IDH_MocA: Oxidore 80.1 1.7 3.8E-05 37.2 3.2 88 77-170 2-92 (120)
158 TIGR01007 eps_fam capsular exo 79.9 3.4 7.4E-05 39.2 5.4 32 180-211 16-50 (204)
159 PHA02519 plasmid partition pro 79.9 2.6 5.6E-05 44.6 5.0 34 180-213 105-141 (387)
160 PRK14806 bifunctional cyclohex 79.8 11 0.00023 43.5 10.4 108 76-205 4-113 (735)
161 TIGR03371 cellulose_yhjQ cellu 79.7 2.8 6.1E-05 40.9 4.9 32 182-213 2-36 (246)
162 PF00448 SRP54: SRP54-type pro 79.7 1.8 3.9E-05 41.2 3.4 30 183-212 3-34 (196)
163 PRK13235 nifH nitrogenase redu 79.7 2.7 5.9E-05 42.0 4.9 32 182-213 2-35 (274)
164 PRK13705 plasmid-partitioning 79.2 2.7 5.8E-05 44.5 4.8 34 180-213 105-141 (388)
165 PF03205 MobB: Molybdopterin g 79.1 3 6.5E-05 37.4 4.5 33 182-214 1-35 (140)
166 PRK00652 lpxK tetraacyldisacch 79.1 3 6.6E-05 43.0 5.0 35 180-214 48-86 (325)
167 PF07991 IlvN: Acetohydroxy ac 79.1 3.1 6.7E-05 38.2 4.5 62 76-146 5-66 (165)
168 PRK10037 cell division protein 79.0 3 6.4E-05 41.2 4.8 32 182-213 2-36 (250)
169 PLN02353 probable UDP-glucose 79.0 28 0.00061 37.9 12.6 114 77-204 3-143 (473)
170 PRK13403 ketol-acid reductoiso 78.9 4.3 9.4E-05 41.7 6.0 54 66-123 9-62 (335)
171 PRK13849 putative crown gall t 78.9 3.1 6.6E-05 40.7 4.8 32 182-213 2-36 (231)
172 PRK14494 putative molybdopteri 78.8 3 6.5E-05 40.8 4.7 33 181-213 1-35 (229)
173 PLN02688 pyrroline-5-carboxyla 78.8 9.9 0.00021 37.7 8.6 63 77-148 2-69 (266)
174 PRK14974 cell division protein 78.6 3.1 6.7E-05 43.1 5.0 33 180-212 139-173 (336)
175 COG1936 Predicted nucleotide k 78.5 1.9 4E-05 40.1 2.9 25 182-210 1-27 (180)
176 PF00670 AdoHcyase_NAD: S-aden 78.5 2.8 6.1E-05 38.5 4.1 52 70-123 18-69 (162)
177 TIGR03453 partition_RepA plasm 78.3 3.1 6.7E-05 44.0 5.0 34 180-213 103-139 (387)
178 cd02032 Bchl_like This family 78.1 3.1 6.8E-05 41.4 4.8 31 183-213 2-34 (267)
179 KOG0409 Predicted dehydrogenas 78.0 3 6.6E-05 42.0 4.4 48 75-124 35-82 (327)
180 PRK13230 nitrogenase reductase 77.9 3.1 6.8E-05 41.7 4.7 32 182-213 2-35 (279)
181 PRK13185 chlL protochlorophyll 77.6 3.2 7E-05 41.3 4.7 32 182-213 3-36 (270)
182 TIGR03029 EpsG chain length de 77.6 3.4 7.3E-05 41.3 4.8 34 179-212 101-137 (274)
183 TIGR02964 xanthine_xdhC xanthi 77.6 7.9 0.00017 38.3 7.3 34 76-110 101-134 (246)
184 PRK14182 bifunctional 5,10-met 77.6 12 0.00025 37.8 8.5 118 76-206 158-277 (282)
185 PF00070 Pyr_redox: Pyridine n 77.6 7.8 0.00017 30.7 6.1 52 77-129 1-63 (80)
186 TIGR02016 BchX chlorophyllide 77.5 3.3 7.2E-05 42.1 4.8 31 183-213 2-34 (296)
187 PRK07679 pyrroline-5-carboxyla 77.5 14 0.0003 37.1 9.3 65 76-148 4-73 (279)
188 KOG0685 Flavin-containing amin 77.3 3.9 8.5E-05 43.7 5.3 52 75-126 21-80 (498)
189 PTZ00188 adrenodoxin reductase 77.1 3 6.4E-05 45.4 4.4 34 75-108 39-72 (506)
190 PRK14193 bifunctional 5,10-met 77.1 19 0.00041 36.3 9.9 118 76-206 159-279 (284)
191 PRK07233 hypothetical protein; 77.0 2.2 4.8E-05 45.3 3.5 30 77-107 1-30 (434)
192 TIGR01968 minD_bact septum sit 76.8 3.5 7.6E-05 40.5 4.7 32 182-213 2-36 (261)
193 TIGR00465 ilvC ketol-acid redu 76.7 11 0.00025 38.6 8.5 64 76-148 4-67 (314)
194 cd01065 NAD_bind_Shikimate_DH 76.5 8.1 0.00017 34.6 6.6 34 75-109 19-53 (155)
195 PRK14186 bifunctional 5,10-met 76.5 16 0.00034 37.2 9.1 124 76-207 159-283 (297)
196 COG3367 Uncharacterized conser 76.4 4.3 9.3E-05 41.3 5.0 84 108-211 85-181 (339)
197 PRK06696 uridine kinase; Valid 76.2 4.8 0.0001 39.0 5.3 31 180-210 21-53 (223)
198 COG0552 FtsY Signal recognitio 76.2 4 8.6E-05 41.9 4.8 33 180-212 138-172 (340)
199 cd02029 PRK_like Phosphoribulo 76.1 3.7 8E-05 41.1 4.5 28 183-210 1-30 (277)
200 TIGR03840 TMPT_Se_Te thiopurin 76.1 3.4 7.4E-05 39.9 4.2 30 76-108 36-65 (213)
201 PRK03659 glutathione-regulated 76.1 7.9 0.00017 43.5 7.7 73 75-149 400-473 (601)
202 PRK00066 ldh L-lactate dehydro 76.0 7.3 0.00016 40.0 6.8 71 75-153 6-86 (315)
203 PRK07208 hypothetical protein; 75.9 2.8 6.1E-05 45.4 4.0 33 74-107 3-35 (479)
204 TIGR00554 panK_bact pantothena 75.7 2.9 6.3E-05 42.4 3.7 34 173-206 53-89 (290)
205 PRK11199 tyrA bifunctional cho 75.6 20 0.00043 37.8 10.1 34 74-108 97-131 (374)
206 PRK06249 2-dehydropantoate 2-r 75.5 25 0.00055 35.8 10.7 45 76-124 6-50 (313)
207 TIGR02279 PaaC-3OHAcCoADH 3-hy 75.5 15 0.00033 40.3 9.5 33 76-109 6-38 (503)
208 TIGR03018 pepcterm_TyrKin exop 75.5 4.6 0.0001 38.5 5.0 33 180-212 34-70 (207)
209 PRK00784 cobyric acid synthase 75.3 3.2 7E-05 45.4 4.3 31 182-212 3-36 (488)
210 PLN02712 arogenate dehydrogena 75.2 6.6 0.00014 44.7 6.8 65 75-148 52-116 (667)
211 PRK10669 putative cation:proto 75.1 10 0.00022 42.2 8.2 71 75-148 417-489 (558)
212 PRK14167 bifunctional 5,10-met 75.0 17 0.00036 37.0 8.9 125 76-207 158-287 (297)
213 PRK13234 nifH nitrogenase redu 74.9 4.4 9.5E-05 41.2 4.9 33 181-213 4-38 (295)
214 PLN02520 bifunctional 3-dehydr 74.8 13 0.00027 41.2 8.7 33 75-108 379-411 (529)
215 PRK14173 bifunctional 5,10-met 74.7 22 0.00048 35.9 9.7 121 76-206 156-278 (287)
216 KOG2380 Prephenate dehydrogena 74.7 5.3 0.00011 40.9 5.1 65 76-150 53-118 (480)
217 PF03308 ArgK: ArgK protein; 74.7 6.8 0.00015 38.9 5.8 34 180-213 28-63 (266)
218 cd02028 UMPK_like Uridine mono 74.6 4.3 9.3E-05 38.0 4.4 29 183-211 1-31 (179)
219 PF06564 YhjQ: YhjQ protein; 74.6 3.4 7.5E-05 40.7 3.8 31 183-213 6-36 (243)
220 TIGR01287 nifH nitrogenase iro 74.5 4.2 9.2E-05 40.6 4.6 31 183-213 2-34 (275)
221 COG1618 Predicted nucleotide k 74.5 4.3 9.4E-05 37.3 4.1 36 182-217 6-43 (179)
222 COG0794 GutQ Predicted sugar p 74.2 25 0.00054 33.6 9.3 21 69-89 33-53 (202)
223 PRK11670 antiporter inner memb 74.2 4.6 0.0001 42.4 4.9 33 181-213 107-142 (369)
224 PRK06545 prephenate dehydrogen 73.8 7.3 0.00016 40.8 6.3 34 76-110 1-34 (359)
225 PRK14493 putative bifunctional 73.4 5.2 0.00011 40.2 4.9 32 181-213 1-34 (274)
226 cd03116 MobB Molybdenum is an 73.4 5.9 0.00013 36.3 4.9 33 181-213 1-35 (159)
227 cd02033 BchX Chlorophyllide re 73.4 5.4 0.00012 41.2 5.1 34 180-213 30-65 (329)
228 PLN02616 tetrahydrofolate dehy 73.3 15 0.00032 38.3 8.1 124 76-206 232-357 (364)
229 PRK11883 protoporphyrinogen ox 73.1 3.4 7.3E-05 44.2 3.7 30 77-107 2-33 (451)
230 PRK05439 pantothenate kinase; 73.1 5.6 0.00012 40.8 5.0 26 181-206 86-113 (311)
231 PRK13255 thiopurine S-methyltr 72.9 4.6 9.9E-05 39.1 4.2 30 76-108 39-68 (218)
232 PLN02858 fructose-bisphosphate 72.6 15 0.00033 45.3 9.4 113 75-207 4-116 (1378)
233 cd00401 AdoHcyase S-adenosyl-L 72.6 6.7 0.00015 41.8 5.7 64 76-149 203-266 (413)
234 PF01656 CbiA: CobQ/CobB/MinD/ 72.5 3.9 8.5E-05 38.0 3.6 29 185-213 5-33 (195)
235 PLN02852 ferredoxin-NADP+ redu 72.5 4.1 8.9E-05 44.5 4.1 33 75-108 26-60 (491)
236 PLN02172 flavin-containing mon 72.4 3.7 8E-05 44.6 3.8 33 75-108 10-42 (461)
237 PRK07531 bifunctional 3-hydrox 72.3 19 0.00041 39.5 9.3 33 76-109 5-37 (495)
238 cd02037 MRP-like MRP (Multiple 72.2 5.2 0.00011 36.7 4.3 26 188-213 9-34 (169)
239 TIGR03815 CpaE_hom_Actino heli 71.8 13 0.00029 38.0 7.6 35 179-213 91-128 (322)
240 PRK12374 putative dithiobiotin 71.7 5.8 0.00013 38.7 4.7 31 183-213 4-37 (231)
241 PF02737 3HCDH_N: 3-hydroxyacy 71.6 4.9 0.00011 37.6 4.0 31 77-108 1-31 (180)
242 PRK00094 gpsA NAD(P)H-dependen 71.5 29 0.00064 35.2 10.1 42 77-120 3-44 (325)
243 TIGR00176 mobB molybdopterin-g 71.4 5.4 0.00012 36.4 4.1 31 183-213 1-33 (155)
244 PRK05562 precorrin-2 dehydroge 71.4 17 0.00038 35.3 7.8 92 70-168 20-114 (223)
245 PRK13984 putative oxidoreducta 71.2 6.9 0.00015 44.0 5.8 75 75-150 283-378 (604)
246 PRK06475 salicylate hydroxylas 71.2 4 8.7E-05 43.1 3.7 32 76-108 3-34 (400)
247 TIGR01969 minD_arch cell divis 71.2 6.2 0.00013 38.5 4.8 31 183-213 2-35 (251)
248 PF01494 FAD_binding_3: FAD bi 71.1 4.5 9.8E-05 41.2 4.0 31 77-108 3-33 (356)
249 PRK10416 signal recognition pa 71.0 6.8 0.00015 40.3 5.2 32 180-211 113-146 (318)
250 PF13500 AAA_26: AAA domain; P 70.9 5.4 0.00012 37.7 4.2 31 182-212 1-34 (199)
251 PRK14168 bifunctional 5,10-met 70.6 29 0.00062 35.3 9.4 125 76-206 162-291 (297)
252 PRK08268 3-hydroxy-acyl-CoA de 70.6 12 0.00025 41.3 7.2 34 75-109 7-40 (507)
253 TIGR01763 MalateDH_bact malate 70.5 18 0.00039 36.9 8.2 71 76-153 2-82 (305)
254 COG1748 LYS9 Saccharopine dehy 70.3 8.3 0.00018 40.7 5.7 90 76-170 2-98 (389)
255 cd00300 LDH_like L-lactate deh 69.7 16 0.00035 37.1 7.6 69 78-153 1-79 (300)
256 PRK14495 putative molybdopteri 69.6 6.4 0.00014 42.1 4.7 33 181-213 1-35 (452)
257 PRK12810 gltD glutamate syntha 69.6 11 0.00025 40.8 6.9 75 76-151 144-239 (471)
258 PF00743 FMO-like: Flavin-bind 69.4 5.3 0.00011 44.2 4.2 32 76-108 2-33 (531)
259 PRK07045 putative monooxygenas 69.2 5.1 0.00011 42.1 4.0 32 76-108 6-37 (388)
260 PRK13233 nifH nitrogenase redu 69.2 6.6 0.00014 39.2 4.6 31 182-212 3-36 (275)
261 PRK06847 hypothetical protein; 69.1 5.6 0.00012 41.4 4.2 33 75-108 4-36 (375)
262 CHL00175 minD septum-site dete 69.1 7.4 0.00016 39.0 4.9 34 180-213 14-50 (281)
263 PRK07066 3-hydroxybutyryl-CoA 69.0 5.9 0.00013 40.8 4.2 34 75-109 7-40 (321)
264 PF02826 2-Hacid_dh_C: D-isome 69.0 5.3 0.00012 37.2 3.6 110 70-205 33-143 (178)
265 PRK13231 nitrogenase reductase 69.0 3.5 7.6E-05 40.9 2.5 30 182-212 3-34 (264)
266 PRK14178 bifunctional 5,10-met 68.8 15 0.00032 37.1 6.8 118 76-208 153-273 (279)
267 PF01210 NAD_Gly3P_dh_N: NAD-d 68.6 6.4 0.00014 35.9 4.0 40 77-118 1-40 (157)
268 PF01946 Thi4: Thi4 family; PD 68.5 4.9 0.00011 38.9 3.2 30 77-107 19-48 (230)
269 KOG3022 Predicted ATPase, nucl 68.4 7.4 0.00016 38.9 4.5 32 182-213 48-82 (300)
270 PRK14181 bifunctional 5,10-met 68.3 28 0.00061 35.2 8.7 124 76-206 154-282 (287)
271 PRK14184 bifunctional 5,10-met 68.3 24 0.00052 35.7 8.2 118 76-206 158-280 (286)
272 COG1635 THI4 Ribulose 1,5-bisp 68.3 5.3 0.00012 38.7 3.4 29 77-106 32-60 (262)
273 PRK13236 nitrogenase reductase 68.0 8.1 0.00018 39.2 5.0 34 180-213 5-40 (296)
274 cd05005 SIS_PHI Hexulose-6-pho 67.9 34 0.00073 31.7 8.8 17 73-89 31-47 (179)
275 COG1192 Soj ATPases involved i 67.9 8 0.00017 38.1 4.8 31 182-212 3-37 (259)
276 TIGR01921 DAP-DH diaminopimela 67.8 20 0.00043 36.9 7.7 86 76-170 4-90 (324)
277 PRK09260 3-hydroxybutyryl-CoA 67.7 6.4 0.00014 39.7 4.1 33 76-109 2-34 (288)
278 TIGR00518 alaDH alanine dehydr 67.6 12 0.00025 39.4 6.2 33 75-108 167-199 (370)
279 TIGR00936 ahcY adenosylhomocys 67.6 9.2 0.0002 40.7 5.4 64 76-149 196-259 (406)
280 COG1072 CoaA Panthothenate kin 67.3 5.4 0.00012 39.8 3.4 29 181-209 82-112 (283)
281 PF01262 AlaDh_PNT_C: Alanine 67.3 6.3 0.00014 36.4 3.7 47 75-123 20-66 (168)
282 PLN02268 probable polyamine ox 67.2 5.2 0.00011 42.8 3.6 30 77-107 2-31 (435)
283 PRK10818 cell division inhibit 67.2 8.2 0.00018 38.3 4.8 31 182-212 3-36 (270)
284 PRK13243 glyoxylate reductase; 67.0 23 0.0005 36.7 8.2 106 76-205 151-256 (333)
285 COG0373 HemA Glutamyl-tRNA red 67.0 11 0.00023 40.1 5.7 69 75-150 178-248 (414)
286 COG3804 Uncharacterized conser 67.0 4.1 9E-05 40.6 2.4 87 77-170 4-97 (350)
287 cd02036 MinD Bacterial cell di 67.0 6.6 0.00014 35.9 3.8 29 185-213 6-34 (179)
288 PF09140 MipZ: ATPase MipZ; I 66.9 7.5 0.00016 38.4 4.2 31 183-213 2-35 (261)
289 PRK14185 bifunctional 5,10-met 66.9 30 0.00064 35.1 8.6 124 76-206 158-287 (293)
290 PRK13302 putative L-aspartate 66.9 13 0.00028 37.3 6.1 31 76-107 7-40 (271)
291 COG0489 Mrp ATPases involved i 66.9 8.7 0.00019 38.4 4.8 34 180-213 56-92 (265)
292 PRK07236 hypothetical protein; 66.8 6.1 0.00013 41.5 3.9 32 76-108 7-38 (386)
293 TIGR01809 Shik-DH-AROM shikima 66.7 36 0.00079 34.2 9.4 32 76-108 126-158 (282)
294 COG0529 CysC Adenylylsulfate k 66.6 15 0.00032 34.4 5.8 34 180-213 22-57 (197)
295 PRK01077 cobyrinic acid a,c-di 66.6 7.2 0.00016 42.2 4.5 33 181-213 3-38 (451)
296 TIGR01377 soxA_mon sarcosine o 66.2 5.7 0.00012 41.4 3.6 29 78-107 3-31 (380)
297 COG1893 ApbA Ketopantoate redu 66.2 25 0.00054 36.0 8.1 70 77-149 2-76 (307)
298 TIGR01281 DPOR_bchL light-inde 66.1 6 0.00013 39.3 3.5 26 188-213 9-34 (268)
299 PRK08163 salicylate hydroxylas 66.0 6.4 0.00014 41.3 3.9 32 76-108 5-36 (396)
300 KOG3347 Predicted nucleotide k 66.0 4.6 9.9E-05 36.7 2.3 27 180-209 6-34 (176)
301 PF06418 CTP_synth_N: CTP synt 65.8 13 0.00028 36.9 5.6 57 182-239 2-64 (276)
302 COG0665 DadA Glycine/D-amino a 65.8 7 0.00015 40.7 4.2 32 76-108 5-36 (387)
303 TIGR00064 ftsY signal recognit 65.7 9.2 0.0002 38.4 4.8 32 180-211 71-104 (272)
304 PRK00090 bioD dithiobiotin syn 65.7 8.5 0.00018 37.0 4.4 29 184-212 2-33 (222)
305 cd05292 LDH_2 A subgroup of L- 65.7 13 0.00028 38.0 6.0 69 77-153 2-80 (308)
306 PF01266 DAO: FAD dependent ox 65.6 6.3 0.00014 40.1 3.7 29 78-107 2-30 (358)
307 TIGR00455 apsK adenylylsulfate 65.5 17 0.00036 33.8 6.3 31 179-209 16-48 (184)
308 cd05293 LDH_1 A subgroup of L- 65.5 20 0.00043 36.8 7.2 71 76-153 4-84 (312)
309 KOG2614 Kynurenine 3-monooxyge 65.4 6 0.00013 41.7 3.4 31 76-107 3-33 (420)
310 PTZ00075 Adenosylhomocysteinas 65.3 11 0.00025 40.7 5.6 64 76-149 255-318 (476)
311 CHL00072 chlL photochlorophyll 65.2 6.5 0.00014 39.8 3.6 29 184-212 3-33 (290)
312 PRK07364 2-octaprenyl-6-methox 65.2 5.9 0.00013 41.9 3.5 31 77-108 20-50 (415)
313 COG0512 PabA Anthranilate/para 65.0 52 0.0011 31.1 9.2 37 140-187 45-81 (191)
314 PRK12921 2-dehydropantoate 2-r 65.0 11 0.00024 38.0 5.3 44 77-123 2-45 (305)
315 cd05213 NAD_bind_Glutamyl_tRNA 64.9 10 0.00023 38.8 5.1 48 75-123 178-226 (311)
316 PRK06141 ornithine cyclodeamin 64.6 14 0.00031 37.8 6.1 70 74-148 124-197 (314)
317 PRK12409 D-amino acid dehydrog 64.5 6.8 0.00015 41.5 3.8 31 77-108 3-33 (410)
318 TIGR01724 hmd_rel H2-forming N 64.5 46 0.00099 34.3 9.3 104 83-209 30-137 (341)
319 COG3640 CooC CO dehydrogenase 64.5 9.3 0.0002 37.3 4.3 30 183-212 2-34 (255)
320 TIGR03127 RuMP_HxlB 6-phospho 64.4 45 0.00096 30.8 8.9 21 70-90 25-45 (179)
321 TIGR02360 pbenz_hydroxyl 4-hyd 64.2 7 0.00015 41.3 3.8 31 77-108 4-34 (390)
322 PF01583 APS_kinase: Adenylyls 64.1 11 0.00023 34.6 4.5 32 182-213 3-36 (156)
323 PRK06753 hypothetical protein; 63.8 7.3 0.00016 40.5 3.8 31 77-108 2-32 (373)
324 COG0572 Udk Uridine kinase [Nu 63.7 5.8 0.00013 38.3 2.7 27 180-206 7-35 (218)
325 TIGR00379 cobB cobyrinic acid 63.6 8.7 0.00019 41.5 4.4 27 187-213 7-34 (449)
326 cd01672 TMPK Thymidine monopho 63.3 11 0.00025 34.9 4.7 29 183-211 2-32 (200)
327 cd02042 ParA ParA and ParB of 63.3 10 0.00022 31.4 4.0 30 183-212 4-33 (104)
328 PRK10751 molybdopterin-guanine 63.3 11 0.00025 35.0 4.6 33 180-212 5-39 (173)
329 PRK09424 pntA NAD(P) transhydr 63.2 11 0.00025 41.2 5.2 48 75-124 165-212 (509)
330 PRK07588 hypothetical protein; 63.1 7.5 0.00016 40.8 3.8 30 77-107 2-31 (391)
331 PF07015 VirC1: VirC1 protein; 63.1 12 0.00026 36.5 4.8 32 182-213 2-36 (231)
332 COG1648 CysG Siroheme synthase 63.1 23 0.00051 34.1 6.8 85 76-167 13-100 (210)
333 TIGR03215 ac_ald_DH_ac acetald 62.9 26 0.00057 35.4 7.4 90 77-170 3-94 (285)
334 KOG1399 Flavin-containing mono 62.6 7 0.00015 42.2 3.4 32 75-107 6-37 (448)
335 PRK14174 bifunctional 5,10-met 62.2 39 0.00084 34.4 8.5 123 76-206 160-289 (295)
336 COG0169 AroE Shikimate 5-dehyd 62.1 67 0.0015 32.5 10.1 33 76-109 127-160 (283)
337 PRK10262 thioredoxin reductase 62.0 8.5 0.00018 39.3 3.8 32 74-106 5-36 (321)
338 PRK08849 2-octaprenyl-3-methyl 62.0 8 0.00017 40.6 3.7 30 77-107 5-34 (384)
339 cd01079 NAD_bind_m-THF_DH NAD 62.0 53 0.0011 31.3 8.7 34 71-106 60-93 (197)
340 PRK12831 putative oxidoreducta 62.0 8.2 0.00018 41.9 3.9 31 75-106 140-170 (464)
341 PRK08293 3-hydroxybutyryl-CoA 61.9 9.3 0.0002 38.5 4.0 33 76-109 4-36 (287)
342 PRK06126 hypothetical protein; 61.9 7.8 0.00017 42.9 3.8 32 76-108 8-39 (545)
343 PRK12723 flagellar biosynthesi 61.8 6.6 0.00014 41.5 3.0 31 182-212 175-211 (388)
344 PF00056 Ldh_1_N: lactate/mala 61.8 16 0.00035 32.6 5.2 69 77-152 2-81 (141)
345 TIGR02731 phytoene_desat phyto 61.8 7.4 0.00016 41.8 3.5 30 77-107 1-30 (453)
346 PRK06130 3-hydroxybutyryl-CoA 61.6 9.8 0.00021 38.8 4.2 34 75-109 4-37 (311)
347 cd02025 PanK Pantothenate kina 61.5 10 0.00022 36.7 4.1 23 183-205 1-25 (220)
348 COG0493 GltD NADPH-dependent g 61.4 13 0.00027 40.4 5.1 50 76-126 124-193 (457)
349 PF07992 Pyr_redox_2: Pyridine 61.4 10 0.00022 35.4 4.0 29 77-106 1-29 (201)
350 PF03848 TehB: Tellurite resis 61.3 9.3 0.0002 36.3 3.6 45 76-123 32-79 (192)
351 PF02254 TrkA_N: TrkA-N domain 61.2 22 0.00048 30.0 5.8 49 78-128 1-49 (116)
352 TIGR00041 DTMP_kinase thymidyl 61.2 13 0.00028 34.7 4.7 30 182-211 4-35 (195)
353 cd05191 NAD_bind_amino_acid_DH 61.2 14 0.0003 29.8 4.2 32 75-106 23-54 (86)
354 TIGR01035 hemA glutamyl-tRNA r 61.0 12 0.00027 39.9 5.0 32 76-108 181-213 (417)
355 TIGR01292 TRX_reduct thioredox 60.9 8.6 0.00019 38.3 3.6 29 77-106 2-30 (300)
356 TIGR01425 SRP54_euk signal rec 60.9 13 0.00029 39.8 5.1 33 181-213 100-134 (429)
357 PLN02819 lysine-ketoglutarate 60.8 20 0.00043 42.8 6.9 92 74-170 568-678 (1042)
358 TIGR02023 BchP-ChlP geranylger 60.8 8.5 0.00019 40.5 3.7 30 78-108 3-32 (388)
359 PF13614 AAA_31: AAA domain; P 60.7 13 0.00029 33.1 4.5 30 182-211 1-33 (157)
360 COG3349 Uncharacterized conser 60.6 9.7 0.00021 41.2 4.0 31 77-108 2-32 (485)
361 PRK11259 solA N-methyltryptoph 60.6 8.3 0.00018 40.1 3.6 30 77-107 5-34 (376)
362 PRK11730 fadB multifunctional 60.6 42 0.00091 38.7 9.4 33 76-109 314-346 (715)
363 TIGR00682 lpxK tetraacyldisacc 60.5 15 0.00032 37.7 5.2 35 180-214 27-65 (311)
364 TIGR02734 crtI_fam phytoene de 60.4 7.1 0.00015 42.7 3.1 30 78-108 1-30 (502)
365 PF03486 HI0933_like: HI0933-l 60.3 9.4 0.0002 40.7 3.9 32 78-110 3-34 (409)
366 PRK12778 putative bifunctional 60.3 8.6 0.00019 44.5 3.9 31 75-106 431-461 (752)
367 TIGR00313 cobQ cobyric acid sy 60.2 8.8 0.00019 41.8 3.7 29 185-213 2-33 (475)
368 PRK09435 membrane ATPase/prote 60.2 21 0.00045 37.0 6.3 35 180-214 55-91 (332)
369 TIGR02374 nitri_red_nirB nitri 60.1 41 0.00088 39.2 9.3 81 75-156 140-242 (785)
370 PRK05476 S-adenosyl-L-homocyst 60.1 15 0.00032 39.4 5.3 46 76-123 213-258 (425)
371 PRK05868 hypothetical protein; 60.1 11 0.00024 39.4 4.4 32 76-108 2-33 (372)
372 COG3954 PrkB Phosphoribulokina 60.0 5.5 0.00012 37.5 1.8 30 180-209 4-35 (289)
373 PRK09496 trkA potassium transp 59.9 39 0.00084 36.2 8.7 70 77-149 2-74 (453)
374 PRK12775 putative trifunctiona 59.9 8.6 0.00019 46.0 3.8 74 76-150 431-527 (1006)
375 TIGR02437 FadB fatty oxidation 59.6 46 0.001 38.3 9.5 34 75-109 313-346 (714)
376 PRK05714 2-octaprenyl-3-methyl 59.6 9.3 0.0002 40.4 3.7 30 77-107 4-33 (405)
377 COG1233 Phytoene dehydrogenase 59.6 8.6 0.00019 42.0 3.5 30 76-106 4-33 (487)
378 TIGR02028 ChlP geranylgeranyl 59.4 9.6 0.00021 40.4 3.8 30 77-107 2-31 (398)
379 TIGR01988 Ubi-OHases Ubiquinon 59.2 8.9 0.00019 39.9 3.5 30 78-108 2-31 (385)
380 TIGR02032 GG-red-SF geranylger 59.2 9.7 0.00021 37.7 3.6 30 78-108 3-32 (295)
381 PRK08773 2-octaprenyl-3-methyl 59.0 8.8 0.00019 40.3 3.4 31 77-108 8-38 (392)
382 cd03113 CTGs CTP synthetase (C 59.0 30 0.00066 34.1 6.7 57 182-239 1-63 (255)
383 PRK06617 2-octaprenyl-6-methox 58.8 9.6 0.00021 39.9 3.7 30 77-107 3-32 (374)
384 cd02034 CooC The accessory pro 58.8 12 0.00027 32.2 3.7 29 184-212 2-32 (116)
385 PRK04176 ribulose-1,5-biphosph 58.8 9.9 0.00021 37.8 3.5 30 77-107 27-56 (257)
386 PRK09270 nucleoside triphospha 58.7 8.9 0.00019 37.2 3.2 30 180-209 32-63 (229)
387 TIGR00562 proto_IX_ox protopor 58.7 9.8 0.00021 40.9 3.8 31 76-107 3-37 (462)
388 PRK09126 hypothetical protein; 58.7 9.5 0.00021 40.0 3.6 31 77-108 5-35 (392)
389 TIGR01317 GOGAT_sm_gam glutama 58.7 22 0.00047 38.9 6.5 75 76-151 144-239 (485)
390 PRK00045 hemA glutamyl-tRNA re 58.6 16 0.00035 39.1 5.4 32 76-108 183-215 (423)
391 KOG0780 Signal recognition par 58.3 9.4 0.0002 39.9 3.3 33 182-214 102-136 (483)
392 PRK13940 glutamyl-tRNA reducta 58.2 19 0.0004 38.6 5.7 67 76-149 182-251 (414)
393 TIGR02733 desat_CrtD C-3',4' d 58.1 10 0.00022 41.4 3.8 31 77-108 3-33 (492)
394 PRK07608 ubiquinone biosynthes 58.1 9.7 0.00021 39.8 3.5 31 77-108 7-37 (388)
395 PRK09496 trkA potassium transp 58.1 44 0.00096 35.7 8.8 72 75-149 231-306 (453)
396 PF13478 XdhC_C: XdhC Rossmann 58.1 9.9 0.00022 33.9 3.1 31 79-110 2-32 (136)
397 PRK06184 hypothetical protein; 58.1 9.7 0.00021 41.7 3.6 31 77-108 5-35 (502)
398 TIGR01984 UbiH 2-polyprenyl-6- 58.0 9.5 0.00021 39.8 3.5 30 78-108 2-32 (382)
399 PRK03846 adenylylsulfate kinas 58.0 24 0.00052 33.3 5.9 31 179-209 22-54 (198)
400 COG1232 HemY Protoporphyrinoge 57.9 10 0.00022 40.8 3.6 29 77-106 2-32 (444)
401 COG0644 FixC Dehydrogenases (f 57.4 10 0.00022 40.1 3.6 31 77-108 5-35 (396)
402 PRK00889 adenylylsulfate kinas 57.4 20 0.00043 33.0 5.1 31 180-210 3-35 (175)
403 PRK11749 dihydropyrimidine deh 57.3 11 0.00023 40.8 3.8 32 75-107 140-171 (457)
404 PRK00711 D-amino acid dehydrog 57.2 11 0.00024 39.8 3.8 30 77-107 2-31 (416)
405 PRK12548 shikimate 5-dehydroge 57.1 21 0.00045 36.2 5.6 33 76-109 127-160 (289)
406 COG0673 MviM Predicted dehydro 57.0 27 0.00058 35.7 6.6 89 76-170 4-97 (342)
407 PRK10157 putative oxidoreducta 57.0 11 0.00025 40.3 3.9 31 77-108 7-37 (428)
408 PRK07538 hypothetical protein; 57.0 11 0.00023 40.1 3.7 31 77-108 2-32 (413)
409 PRK08243 4-hydroxybenzoate 3-m 56.9 11 0.00024 39.7 3.8 32 76-108 3-34 (392)
410 TIGR03219 salicylate_mono sali 56.9 9.1 0.0002 40.6 3.1 31 77-108 2-33 (414)
411 PRK14489 putative bifunctional 56.9 16 0.00034 38.4 4.8 34 180-213 204-239 (366)
412 PLN02494 adenosylhomocysteinas 56.6 21 0.00045 38.7 5.7 65 75-149 254-318 (477)
413 COG1004 Ugd Predicted UDP-gluc 56.5 1.4E+02 0.0031 31.6 11.5 113 77-206 2-138 (414)
414 cd01338 MDH_choloroplast_like 56.5 33 0.00071 35.4 7.0 70 75-152 2-90 (322)
415 PF02558 ApbA: Ketopantoate re 56.4 12 0.00027 33.3 3.5 45 78-125 1-45 (151)
416 cd08230 glucose_DH Glucose deh 56.4 43 0.00093 34.6 8.0 72 76-149 174-247 (355)
417 PF13207 AAA_17: AAA domain; P 56.3 11 0.00024 32.1 3.0 21 183-203 1-23 (121)
418 PLN02576 protoporphyrinogen ox 56.2 10 0.00022 41.2 3.5 31 76-107 13-44 (496)
419 PRK05637 anthranilate synthase 56.2 1.1E+02 0.0024 29.3 10.2 79 76-187 2-80 (208)
420 PLN02487 zeta-carotene desatur 56.1 13 0.00028 41.5 4.2 32 75-107 75-106 (569)
421 COG0504 PyrG CTP synthase (UTP 56.1 28 0.00061 37.6 6.4 31 182-212 2-36 (533)
422 PRK06436 glycerate dehydrogena 56.1 13 0.00029 37.9 4.0 107 70-205 119-225 (303)
423 TIGR03364 HpnW_proposed FAD de 55.9 11 0.00024 39.0 3.6 29 78-107 3-31 (365)
424 PRK09880 L-idonate 5-dehydroge 55.7 41 0.00089 34.5 7.7 72 76-149 171-244 (343)
425 cd02023 UMPK Uridine monophosp 55.7 14 0.00031 34.7 3.9 21 183-203 1-23 (198)
426 PLN00106 malate dehydrogenase 55.7 29 0.00064 35.8 6.5 75 75-153 18-99 (323)
427 PLN02858 fructose-bisphosphate 55.7 49 0.0011 41.1 9.3 110 76-205 325-434 (1378)
428 PRK07494 2-octaprenyl-6-methox 55.6 12 0.00027 39.1 3.8 31 77-108 9-39 (388)
429 PRK05335 tRNA (uracil-5-)-meth 55.6 12 0.00027 40.0 3.8 32 76-108 3-34 (436)
430 PRK12480 D-lactate dehydrogena 55.5 13 0.00028 38.4 3.9 104 76-205 147-250 (330)
431 KOG1324 Dihydrofolate reductas 55.4 29 0.00063 32.3 5.6 85 414-508 61-155 (190)
432 cd05017 SIS_PGI_PMI_1 The memb 55.2 1.3E+02 0.0029 25.6 9.9 14 77-90 1-14 (119)
433 COG1926 Predicted phosphoribos 55.0 90 0.002 30.0 8.9 82 408-499 105-186 (220)
434 PTZ00301 uridine kinase; Provi 55.0 14 0.0003 35.6 3.7 24 181-204 3-28 (210)
435 PRK13512 coenzyme A disulfide 54.9 40 0.00086 36.2 7.7 82 75-157 148-246 (438)
436 COG3640 CooC CO dehydrogenase 54.9 17 0.00037 35.5 4.3 35 77-111 2-41 (255)
437 PLN00093 geranylgeranyl diphos 54.8 12 0.00027 40.3 3.7 32 76-108 40-71 (450)
438 cd03109 DTBS Dethiobiotin synt 54.6 13 0.00028 32.8 3.3 30 184-213 3-33 (134)
439 PRK08618 ornithine cyclodeamin 54.6 32 0.00069 35.4 6.6 71 73-148 125-200 (325)
440 PLN02796 D-glycerate 3-kinase 54.6 15 0.00033 38.1 4.1 30 181-210 100-131 (347)
441 TIGR02441 fa_ox_alpha_mit fatt 54.5 49 0.0011 38.2 8.7 33 76-109 336-368 (737)
442 TIGR00561 pntA NAD(P) transhyd 54.5 20 0.00043 39.3 5.2 48 76-125 165-212 (511)
443 TIGR00292 thiazole biosynthesi 54.5 13 0.00029 36.8 3.7 30 77-107 23-52 (254)
444 PF00890 FAD_binding_2: FAD bi 54.4 12 0.00027 39.6 3.6 29 78-107 2-30 (417)
445 TIGR02822 adh_fam_2 zinc-bindi 54.3 46 0.00099 34.1 7.7 67 76-150 167-233 (329)
446 TIGR00337 PyrG CTP synthase. C 54.2 33 0.00072 37.6 6.8 31 182-212 2-36 (525)
447 COG0654 UbiH 2-polyprenyl-6-me 54.1 14 0.00029 39.0 3.8 32 76-108 3-34 (387)
448 PTZ00082 L-lactate dehydrogena 54.1 46 0.00099 34.3 7.6 70 76-152 7-86 (321)
449 PLN02928 oxidoreductase family 53.9 14 0.00031 38.4 3.9 32 76-108 160-191 (347)
450 cd02019 NK Nucleoside/nucleoti 53.9 21 0.00045 27.5 3.9 27 183-211 1-29 (69)
451 PRK09841 cryptic autophosphory 53.8 18 0.00038 41.8 5.0 33 180-212 530-565 (726)
452 PRK11728 hydroxyglutarate oxid 53.7 12 0.00026 39.4 3.4 30 77-107 4-35 (393)
453 PLN02602 lactate dehydrogenase 53.7 46 0.001 34.7 7.6 70 76-152 38-117 (350)
454 PRK08013 oxidoreductase; Provi 53.6 12 0.00027 39.4 3.5 31 77-108 5-35 (400)
455 TIGR01532 E4PD_g-proteo D-eryt 53.5 73 0.0016 32.9 8.9 89 77-168 1-117 (325)
456 COG0237 CoaE Dephospho-CoA kin 53.5 12 0.00027 35.7 3.1 22 180-201 1-24 (201)
457 PRK05732 2-octaprenyl-6-methox 53.4 12 0.00026 39.1 3.4 30 77-107 5-37 (395)
458 PRK01906 tetraacyldisaccharide 53.4 23 0.0005 36.8 5.3 35 180-214 55-93 (338)
459 PRK01747 mnmC bifunctional tRN 53.2 13 0.00028 42.4 3.7 31 76-107 261-291 (662)
460 PRK08850 2-octaprenyl-6-methox 53.1 13 0.00028 39.3 3.6 30 77-107 6-35 (405)
461 TIGR00031 UDP-GALP_mutase UDP- 53.1 14 0.0003 39.0 3.6 30 77-107 3-32 (377)
462 PRK08300 acetaldehyde dehydrog 53.0 36 0.00078 34.7 6.5 95 75-170 4-100 (302)
463 PRK07574 formate dehydrogenase 53.0 74 0.0016 33.7 9.0 109 76-206 193-301 (385)
464 TIGR03376 glycerol3P_DH glycer 52.8 1.5E+02 0.0032 30.9 11.1 30 77-107 1-38 (342)
465 PRK02261 methylaspartate mutas 52.8 1.7E+02 0.0036 26.0 11.8 94 86-210 18-115 (137)
466 cd03115 SRP The signal recogni 52.8 24 0.00051 32.3 4.9 30 183-212 2-33 (173)
467 PRK08020 ubiF 2-octaprenyl-3-m 52.7 13 0.00029 38.8 3.6 30 77-107 7-36 (391)
468 COG0125 Tmk Thymidylate kinase 52.5 25 0.00053 33.9 5.0 32 181-212 3-36 (208)
469 PLN02924 thymidylate kinase 52.4 21 0.00046 34.6 4.6 32 179-210 14-47 (220)
470 PRK13977 myosin-cross-reactive 52.3 16 0.00036 40.5 4.2 31 76-107 23-57 (576)
471 PRK06185 hypothetical protein; 51.9 14 0.00031 38.9 3.6 31 77-108 8-38 (407)
472 PRK11154 fadJ multifunctional 51.9 72 0.0016 36.7 9.5 34 75-109 309-343 (708)
473 PRK04207 glyceraldehyde-3-phos 51.9 67 0.0014 33.4 8.5 40 77-116 3-42 (341)
474 TIGR02732 zeta_caro_desat caro 51.8 14 0.0003 40.3 3.5 30 77-107 1-30 (474)
475 PRK00698 tmk thymidylate kinas 51.6 25 0.00054 33.0 4.9 30 181-210 3-34 (205)
476 KOG0068 D-3-phosphoglycerate d 51.6 59 0.0013 33.6 7.5 46 76-124 147-192 (406)
477 COG1737 RpiR Transcriptional r 51.5 29 0.00062 35.0 5.5 39 66-106 121-163 (281)
478 PRK13581 D-3-phosphoglycerate 51.4 50 0.0011 36.5 7.9 106 76-205 141-246 (526)
479 cd03114 ArgK-like The function 51.4 20 0.00044 32.3 4.0 28 184-211 2-31 (148)
480 KOG3308 Uncharacterized protei 51.4 11 0.00025 35.9 2.4 25 182-206 5-31 (225)
481 PF02606 LpxK: Tetraacyldisacc 51.4 26 0.00055 36.2 5.2 35 180-214 34-72 (326)
482 PRK08818 prephenate dehydrogen 51.3 17 0.00037 38.2 3.9 32 75-107 4-37 (370)
483 COG1663 LpxK Tetraacyldisaccha 51.3 24 0.00053 36.3 4.9 34 181-214 47-84 (336)
484 COG4240 Predicted kinase [Gene 51.0 27 0.00058 34.1 4.8 31 180-210 49-82 (300)
485 PRK10015 oxidoreductase; Provi 51.0 16 0.00035 39.1 3.9 31 77-108 7-37 (429)
486 TIGR03499 FlhF flagellar biosy 50.6 25 0.00054 35.4 5.0 32 180-211 193-228 (282)
487 PRK13304 L-aspartate dehydroge 50.5 37 0.00079 33.9 6.1 64 77-148 3-69 (265)
488 PRK08244 hypothetical protein; 50.5 15 0.00032 40.1 3.6 31 77-108 4-34 (493)
489 PRK14989 nitrite reductase sub 50.5 1.2E+02 0.0025 35.9 11.0 135 76-213 4-174 (847)
490 TIGR00137 gid_trmFO tRNA:m(5)U 50.3 16 0.00034 39.3 3.6 31 77-108 2-32 (433)
491 cd05710 SIS_1 A subgroup of th 50.2 1.5E+02 0.0033 25.3 9.3 14 77-90 1-14 (120)
492 PRK04965 NADH:flavorubredoxin 50.2 75 0.0016 33.2 8.7 78 76-154 142-241 (377)
493 PRK05380 pyrG CTP synthetase; 50.1 42 0.00091 36.9 6.8 32 181-212 2-37 (533)
494 COG0394 Wzb Protein-tyrosine-p 50.1 11 0.00023 33.8 2.0 22 76-97 3-24 (139)
495 PRK00771 signal recognition pa 50.0 25 0.00053 37.9 5.0 33 181-213 95-129 (437)
496 TIGR02730 carot_isom carotene 49.7 16 0.00034 39.9 3.6 30 78-108 3-32 (493)
497 PRK15482 transcriptional regul 49.7 96 0.0021 31.0 9.1 38 66-105 126-167 (285)
498 PLN02568 polyamine oxidase 49.6 18 0.00038 40.2 3.9 31 76-107 6-41 (539)
499 PF13521 AAA_28: AAA domain; P 49.5 11 0.00023 34.3 1.9 19 184-202 2-22 (163)
500 PF13738 Pyr_redox_3: Pyridine 49.3 17 0.00037 33.9 3.4 29 79-108 1-30 (203)
No 1
>COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=5.7e-74 Score=590.59 Aligned_cols=402 Identities=44% Similarity=0.658 Sum_probs=371.9
Q ss_pred ceEEEEeechhhHHHHHHHHHhCCCcEEEecCCCChhHHHHHHCCCeEEeCCCCCCcCCCCCCCCCCEEEEcCCCCCCCH
Q 009293 76 GWIHFVGIGGSGLSALAKLALKQGFEVSGSDLVWSSYMEGLLEAGANLHIGHSVSNIQGNDGSRFPNAVVASSAIPQDNV 155 (538)
Q Consensus 76 ~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~d~vvvsp~i~~~~~ 155 (538)
.+||||||||+|||++|++|+.+|++|.|+|.......+.|.++|+.++++++++++. ..+.||+|.+|+++||
T Consensus 8 ~~iHfIGIgG~GMsglA~iL~~~G~~VsGSD~~~~~~t~~L~~~G~~i~~gh~~~ni~------~~~~VV~s~Ai~~~Np 81 (459)
T COG0773 8 PKIHFIGIGGIGMSGLAEILLNLGYKVSGSDLAESPMTQRLEALGIEIFIGHDAENIL------DADVVVVSNAIKEDNP 81 (459)
T ss_pred ceEEEEeeccccHHHHHHHHHhCCCceECccccccHHHHHHHHCCCeEeCCCCHHHcC------CCceEEEecccCCCCH
Confidence 3699999999999999999999999999999988888889999999999999988765 5788999999999999
Q ss_pred HHHHHHHCCCCeeeHHHHHHHHhcCCcEEEEeCCCCchHHHHHHHHHHHHcCCCeEEEeCCCCCCCCCCccccCCCcEEE
Q 009293 156 EILHAKSVGVPIYKRDYWLAKLTEKYNLIAVSGSHGKSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFV 235 (538)
Q Consensus 156 ~l~~a~~~gi~vi~~~~~l~~~~~~~~vI~VTGTnGKTTTt~ml~~iL~~~G~~v~~~~g~~~~~~~~~~~~~~~~~~~V 235 (538)
++.+|+++++|+++++++|+...+....|+|+||+||||||+||+++|.++|++++.++|+.+..++. |...+..+++|
T Consensus 82 Ei~~A~e~~ipi~~r~e~Laelm~~~~~iaVaGTHGKTTTTsmla~vl~~~gldPtf~iGG~~~~~g~-na~~g~~~~fV 160 (459)
T COG0773 82 EIVAALERGIPVISRAEMLAELMRFRTSIAVAGTHGKTTTTSMLAWVLEAAGLDPTFLIGGILKNFGT-NARLGSGDYFV 160 (459)
T ss_pred HHHHHHHcCCCeEcHHHHHHHHHhCCeeEEEeCCCCchhHHHHHHHHHHhCCCCCEEEECcccccCCc-ccccCCCceEE
Confidence 99999999999999999999998888999999999999999999999999999999999988877764 55566678999
Q ss_pred EeecCcceeeccccCcEEEEcCCCccccccCCCHHHHHHHHHHHhhcccCCcEEEEcCCCHHHHHHHHHhhhhcCccccC
Q 009293 236 LEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQDTGLKYSG 315 (538)
Q Consensus 236 lE~~~~d~~~~~~~p~vaVITNI~~DHld~~gs~e~~~~~k~~~~~~~~~~~~~Vln~dd~~~~~~~~~~~~~~~~~~~~ 315 (538)
+|.+|+|..++.++|.++|+|||..||+|+|++++++.+++.+++..++..|.+|+|.|||.++.+....+
T Consensus 161 ~EADEsD~sFl~~~P~~aIvTNid~DH~D~y~~~~~i~~~F~~f~~~vp~~G~~v~~~dd~~l~~l~~~~~--------- 231 (459)
T COG0773 161 AEADESDSSFLHYNPRVAIVTNIEFDHLDYYGDLEAIKQAFHHFVRNVPFYGRAVVCGDDPNLRELLSRGC--------- 231 (459)
T ss_pred EEecccccccccCCCCEEEEeCCCcchhhhhCCHHHHHHHHHHHHHhCCccceEEEECCCHHHHHHHhccc---------
Confidence 99999999999999999999999999999999999999999999999999999999999999988776532
Q ss_pred CcccccCcccccCCCCceEEEeeccCCCcceEeeeeecCCCCeEEEEEECCeeeeEEEeCCCchhHHHHHHHHHHHHHHh
Q 009293 316 GVVSNQSSDLWGQGHDYKIITYGFSSFNDWYAESVCPNVQGGSDYILCERGRPLAQISLQIPGVHNVLNSLAVIATVLTL 395 (538)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~d~~~~~i~~~~~~g~~f~~~~~~~~~~~~~l~l~G~hnv~NalaAia~a~~l 395 (538)
..++++||.++++||++.++.... .+..|++...++...++.++++|+||+.|+++|+|+|+.+
T Consensus 232 ---------------~~~v~tyG~~~~ad~~a~ni~~~~-~~~~F~V~~~g~~~~~~~l~~pG~HNvlNAlaaia~a~~~ 295 (459)
T COG0773 232 ---------------WSPVVTYGFDDEADWRAENIRQDG-SGTTFDVLFRGEELGEVKLPLPGRHNVLNALAAIAVAREL 295 (459)
T ss_pred ---------------CCcEEeecCCCcCcEEEEEeEEec-cccEEEEEEcCceeEEEEEcCCchhhHHHHHHHHHHHHHc
Confidence 257899999866999999998764 4566999888877789999999999999999999999999
Q ss_pred cCCccCCcccHHHHHHHhccCCCCCCceEEEeeeCCeEEEEECCCCHHHHHHHHHHHHhhCCC-CeEEEEEccCCCCchH
Q 009293 396 IGDKRQSHESIACLKLPLSKFMGVSRRFDLIGTIYGCHIYDDFAHHPTEVRAVLQAARQRFPN-KALIAVFQPHTYSRLV 474 (538)
Q Consensus 396 gi~~~~~~~~~~~I~~~L~~f~~~~gR~E~v~~~~g~~ii~D~Ahnp~s~~a~l~~l~~~~~~-~r~i~V~g~~~~~r~~ 474 (538)
|++ .+.|+++|++|+|+.+|||+..+.+++++||||||+|+.++++|+++|+.++. +|+++||+||+|+|+.
T Consensus 296 Gi~-------~~~i~~aL~~F~GvkRRfe~~g~~~~~~viDDYaHHPtEI~aTL~aaR~~~~~~~rIvaifQPHrySRt~ 368 (459)
T COG0773 296 GID-------PEAIAEALASFQGVKRRFELKGEVNGVTVIDDYAHHPTEIKATLAAARQKVPGGKRIVAVFQPHRYSRTR 368 (459)
T ss_pred CCC-------HHHHHHHHHhCCCcceeeEEeeeECCEEEEecCCCCHHHHHHHHHHHHHhcCCCceEEEEECCCchHhHH
Confidence 998 79999999999999999999998999999999999999999999999999984 8999999999999999
Q ss_pred HHHHHHHHHhccCCEEEEeccCCCC-ccccc-CcHHHHHHHHhh
Q 009293 475 VLKDDFANALSEADQVVVSAVLVFW-LIIFA-VSSFWLIMAINS 516 (538)
Q Consensus 475 ~~~~~~~~~~~~~D~vi~~~~~~~~-~~~~~-~~~~~~~~~~~~ 516 (538)
++.++|+++++.+|.|++++.|+++ +|+++ ++++.+++.+..
T Consensus 369 ~~~~dF~~~l~~AD~v~l~~VY~A~e~~~~g~~~~~~l~~~i~~ 412 (459)
T COG0773 369 DLLDDFAKALSDADEVILLDVYAAGEEPIEGDVSSEDLAEKIRQ 412 (459)
T ss_pred HHHHHHHHHHhcCCEEEEecccccCCCCCcCCccHHHHHHHhhc
Confidence 9999999999999999999999988 57867 999999877664
No 2
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=100.00 E-value=3.4e-65 Score=549.22 Aligned_cols=400 Identities=44% Similarity=0.661 Sum_probs=333.2
Q ss_pred ceEEEEeechhhHHHHHHHHHhCCCcEEEecCCCChhHHHHHHCCCeEEeCCCCCCcCCCCCCCCCCEEEEcCCCCCCCH
Q 009293 76 GWIHFVGIGGSGLSALAKLALKQGFEVSGSDLVWSSYMEGLLEAGANLHIGHSVSNIQGNDGSRFPNAVVASSAIPQDNV 155 (538)
Q Consensus 76 ~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~d~vvvsp~i~~~~~ 155 (538)
++|+|+|+|+|||+++|++|+.+|++|.++|.+..+..+++.+.|+.+..++.++.+. .+|+||+|||||+++|
T Consensus 8 ~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~------~~d~vv~spgi~~~~~ 81 (461)
T PRK00421 8 KRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKESAVTQRLLELGAIIFIGHDAENIK------DADVVVYSSAIPDDNP 81 (461)
T ss_pred CEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHCC------CCCEEEECCCCCCCCH
Confidence 4699999999999999999999999999999876555666777899987776544443 5899999999999999
Q ss_pred HHHHHHHCCCCeeeHHHHHHHHhcCCcEEEEeCCCCchHHHHHHHHHHHHcCCCeEEEeCCCCCCCCCCccccCCCcEEE
Q 009293 156 EILHAKSVGVPIYKRDYWLAKLTEKYNLIAVSGSHGKSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFV 235 (538)
Q Consensus 156 ~l~~a~~~gi~vi~~~~~l~~~~~~~~vI~VTGTnGKTTTt~ml~~iL~~~G~~v~~~~g~~~~~~~~~~~~~~~~~~~V 235 (538)
.+++|++.|+|++++.+++.+..+..++|+||||||||||++|+++||+.+|+++...+|+....++. +...+..+++|
T Consensus 82 ~~~~a~~~~i~i~~~~e~~~~~~~~~~~I~ITGTnGKTTTt~ll~~iL~~~g~~~~~~~gg~~~~~~~-~~~~~~~~~~V 160 (461)
T PRK00421 82 ELVAARELGIPVVRRAEMLAELMRFRTSIAVAGTHGKTTTTSLLAHVLAEAGLDPTFLIGGILNAAGT-NARLGNSDYFV 160 (461)
T ss_pred HHHHHHHCCCcEEeHHHHHHHHHccCcEEEEECCCCHHHHHHHHHHHHHhcCCCCeEEECceeccCCc-ccccCCCCEEE
Confidence 99999999999999999998876556899999999999999999999999997655566654443332 22234568999
Q ss_pred EeecCcceeeccccCcEEEEcCCCccccccCCCHHHHHHHHHHHhhcccCCcEEEEcCCCHHHHHHHHHhhhhcCccccC
Q 009293 236 LEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQDTGLKYSG 315 (538)
Q Consensus 236 lE~~~~d~~~~~~~p~vaVITNI~~DHld~~gs~e~~~~~k~~~~~~~~~~~~~Vln~dd~~~~~~~~~~~~~~~~~~~~ 315 (538)
+|.++++.....++|+++|||||++||+|||||+|+|+++|.+++..+++++.+|+|.||+....+.....
T Consensus 161 ~E~ss~q~~~~~~~p~vaViTNI~~DHld~~gt~e~y~~ak~k~~~~~~~~~~~V~n~dd~~~~~~~~~~~--------- 231 (461)
T PRK00421 161 AEADESDRSFLKLHPDIAIVTNIDADHLDYYGDFEDLKDAFQEFAHNLPFYGALVACGDDPELRELLPRVS--------- 231 (461)
T ss_pred EECCCccchHhhcCCCEEEEccCChhhccccCCHHHHHHHHHHHHhcCCCCCEEEEECCCHHHHHHHHhcC---------
Confidence 99999988666789999999999999999999999999999999988888899999999998776654321
Q ss_pred CcccccCcccccCCCCceEEEeeccCCCcceEeeeeecCCCCeEEEEEECCeeeeEEEeCCCchhHHHHHHHHHHHHHHh
Q 009293 316 GVVSNQSSDLWGQGHDYKIITYGFSSFNDWYAESVCPNVQGGSDYILCERGRPLAQISLQIPGVHNVLNSLAVIATVLTL 395 (538)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~d~~~~~i~~~~~~g~~f~~~~~~~~~~~~~l~l~G~hnv~NalaAia~a~~l 395 (538)
.++++|+....+++...++... .++..|.+...+..+..++++++|.||++|+++|++++..+
T Consensus 232 ----------------~~~~~~~~~~~~~~~~~~~~~~-~~~~~f~~~~~~~~~~~~~l~l~G~h~~~N~~aA~a~~~~l 294 (461)
T PRK00421 232 ----------------RPVITYGFSEDADFRAENIRQD-GGGTHFDVLRRGEVLGDFTLPLPGRHNVLNALAAIAVALEL 294 (461)
T ss_pred ----------------CCEEEecCCCCCcEEEEEEEEc-CCceEEEEEECCceEEEEEecCCcHHHHHHHHHHHHHHHHc
Confidence 3567787655556665554332 23456666544332235788999999999999999999999
Q ss_pred cCCccCCcccHHHHHHHhccCCCCCCceEEEeeeCCeEEEEECCCCHHHHHHHHHHHHhhCCCCeEEEEEccCCCCchHH
Q 009293 396 IGDKRQSHESIACLKLPLSKFMGVSRRFDLIGTIYGCHIYDDFAHHPTEVRAVLQAARQRFPNKALIAVFQPHTYSRLVV 475 (538)
Q Consensus 396 gi~~~~~~~~~~~I~~~L~~f~~~~gR~E~v~~~~g~~ii~D~Ahnp~s~~a~l~~l~~~~~~~r~i~V~g~~~~~r~~~ 475 (538)
|++ .+.|+++|++|++++||||++...+++.+|+||||||+++++++++++..++++|+++|||++++.|+++
T Consensus 295 gv~-------~~~i~~~l~~f~~~~~R~e~~~~~~g~~~i~D~aHnp~~~~a~~~al~~~~~~~~i~~v~gp~~~~r~kd 367 (461)
T PRK00421 295 GID-------DEAIREALATFKGVKRRFEEKGEVGGVVLIDDYAHHPTEIKATLKAARQGYPDKRIVAVFQPHRYSRTRD 367 (461)
T ss_pred CCC-------HHHHHHHHHhCCCCCcccEEEEecCCcEEEEeCCCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCccHHH
Confidence 997 7999999999999999999998666899999999999999999999998766578999999998899999
Q ss_pred HHHHHHHHhccCCEEEEeccCCCCc-ccccCcHHHHHHHHh
Q 009293 476 LKDDFANALSEADQVVVSAVLVFWL-IIFAVSSFWLIMAIN 515 (538)
Q Consensus 476 ~~~~~~~~~~~~D~vi~~~~~~~~~-~~~~~~~~~~~~~~~ 515 (538)
+...|.++++.+|.+++++++++++ +..+++.+.+.+.+.
T Consensus 368 ~~~~~~~~l~~~d~vi~~~~~~~~e~~~~~~~~~~l~~~~~ 408 (461)
T PRK00421 368 LLDEFAEALSDADEVILLDIYAAGEEPIGGVDSEDLARKIK 408 (461)
T ss_pred HHHHHHHHHHHCCEEEEcCccCCCCCCCCCCCHHHHHHHHh
Confidence 8777888777899999999988775 567788888887653
No 3
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=100.00 E-value=1.3e-63 Score=535.05 Aligned_cols=399 Identities=40% Similarity=0.620 Sum_probs=328.3
Q ss_pred eEEEEeechhhHHHHHHHHHhCCCcEEEecCCCChhHHHHHHCCCeEEeCCCCCCcCCCCCCCCCCEEEEcCCCCCCCHH
Q 009293 77 WIHFVGIGGSGLSALAKLALKQGFEVSGSDLVWSSYMEGLLEAGANLHIGHSVSNIQGNDGSRFPNAVVASSAIPQDNVE 156 (538)
Q Consensus 77 ~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~d~vvvsp~i~~~~~~ 156 (538)
+|||+|+|+|||+++|++|+.+|++|.|+|.+..+..+.+.+.|+.+..++.+..+. .+|+||+|||||+++|+
T Consensus 1 ~~~~iGiggsGm~~la~~L~~~G~~v~~~D~~~~~~~~~l~~~gi~~~~g~~~~~~~------~~d~vV~spgi~~~~p~ 74 (448)
T TIGR01082 1 KIHFVGIGGIGMSGIAEILLNRGYQVSGSDIAENATTKRLEALGIPIYIGHSAENLD------DADVVVVSAAIKDDNPE 74 (448)
T ss_pred CEEEEEECHHHHHHHHHHHHHCCCeEEEECCCcchHHHHHHHCcCEEeCCCCHHHCC------CCCEEEECCCCCCCCHH
Confidence 389999999999999999999999999999765444556777899998775544443 58999999999999999
Q ss_pred HHHHHHCCCCeeeHHHHHHHHhcCCcEEEEeCCCCchHHHHHHHHHHHHcCCCeEEEeCCCCCCCCCCccccCCCcEEEE
Q 009293 157 ILHAKSVGVPIYKRDYWLAKLTEKYNLIAVSGSHGKSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVL 236 (538)
Q Consensus 157 l~~a~~~gi~vi~~~~~l~~~~~~~~vI~VTGTnGKTTTt~ml~~iL~~~G~~v~~~~g~~~~~~~~~~~~~~~~~~~Vl 236 (538)
+++|++.|++++++.+++++..++.++|+|||||||||||+||++||+.+|+++....|+.+..... +...+..+++|+
T Consensus 75 ~~~a~~~~i~v~~~~el~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~~g~~~~~~~gg~~~~~~~-~~~~~~~~~~V~ 153 (448)
T TIGR01082 75 IVEAKERGIPVIRRAEMLAELMRFRHSIAVAGTHGKTTTTAMIAVILKEAGLDPTVVVGGLVKEAGT-NARLGSGEYLVA 153 (448)
T ss_pred HHHHHHcCCceEeHHHHHHHHHhcCcEEEEECCCChHHHHHHHHHHHHHcCCCCeEEECcccccCCc-ccccCCCCEEEE
Confidence 9999999999999999998876556899999999999999999999999998655666655443322 222344689999
Q ss_pred eecCcceeeccccCcEEEEcCCCccccc-cCCCHHHHHHHHHHHhhcccCCcEEEEcCCCHHHHHHHHHhhhhcCccccC
Q 009293 237 EADEYDGCFLGLSPSVAVVTNLDWEHVD-IFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQDTGLKYSG 315 (538)
Q Consensus 237 E~~~~d~~~~~~~p~vaVITNI~~DHld-~~gs~e~~~~~k~~~~~~~~~~~~~Vln~dd~~~~~~~~~~~~~~~~~~~~ 315 (538)
|++++|.....++|+++|||||++||+| ||+|+|+|+++|.+++..+++++.+|+|.||+....+.....
T Consensus 154 E~s~~q~~~~~~~p~vaVitNI~~DHld~~~~s~e~y~~aK~~i~~~~~~~~~~V~n~dd~~~~~~~~~~~--------- 224 (448)
T TIGR01082 154 EADESDASFLHLQPNVAIVTNIEPDHLDTYGSSFERLKAAFEKFIHNLPFYGLAVICADDPVLRELVPKAT--------- 224 (448)
T ss_pred ECCCccchHhhccCCEEEEecCChhhcchhcCCHHHHHHHHHHHHHhCCCCCEEEEECCCHHHHHHHhhcC---------
Confidence 9999988777789999999999999999 999999999999999988888899999999998766543211
Q ss_pred CcccccCcccccCCCCceEEEeecc-CCCcceEeeeeecCCCCeEEEEEECCeeeeEEEeCCCchhHHHHHHHHHHHHHH
Q 009293 316 GVVSNQSSDLWGQGHDYKIITYGFS-SFNDWYAESVCPNVQGGSDYILCERGRPLAQISLQIPGVHNVLNSLAVIATVLT 394 (538)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~g~~-~~~d~~~~~i~~~~~~g~~f~~~~~~~~~~~~~l~l~G~hnv~NalaAia~a~~ 394 (538)
.++++|+.. +.+++.+.++... .++..|.+...+.....+.++++|.||++|+++|++++..
T Consensus 225 ----------------~~~~~f~~~~~~~~~~~~~~~~~-~~~~~f~~~~~~~~~~~~~~~l~G~hn~~N~~aA~a~~~~ 287 (448)
T TIGR01082 225 ----------------EQVITYGGSGEDADYRAENIQQS-GAEGKFSVRGKGKLYLEFTLNLPGRHNVLNALAAIAVALE 287 (448)
T ss_pred ----------------CCEEEeCCCCCCCcEEEEEEEec-CCeEEEEEEECCceEEEEEecCccHhHHHHHHHHHHHHHH
Confidence 255677764 2345655444322 1234455544332224578899999999999999999999
Q ss_pred hcCCccCCcccHHHHHHHhccCCCCCCceEEEeeeCCeEEEEECCCCHHHHHHHHHHHHhhCCCCeEEEEEccCCCCchH
Q 009293 395 LIGDKRQSHESIACLKLPLSKFMGVSRRFDLIGTIYGCHIYDDFAHHPTEVRAVLQAARQRFPNKALIAVFQPHTYSRLV 474 (538)
Q Consensus 395 lgi~~~~~~~~~~~I~~~L~~f~~~~gR~E~v~~~~g~~ii~D~Ahnp~s~~a~l~~l~~~~~~~r~i~V~g~~~~~r~~ 474 (538)
+|++ .+.++++|++|++++||||++...+|+.+|+||||||++++++++++++.++.+|+++|||+|+++|++
T Consensus 288 lgi~-------~~~i~~~l~~f~~~~~R~e~~~~~~gv~~i~D~ahn~~~~~a~~~al~~~~~~~~ii~i~g~~~~~r~k 360 (448)
T TIGR01082 288 LGID-------FEAILRALANFQGVKRRFEILGEFGGVLLIDDYAHHPTEIKATLKAARQGYPDKRIVVVFQPHRYSRTR 360 (448)
T ss_pred cCCC-------HHHHHHHHHhCCCCCccceEEEEeCCeEEEEcCCCCHHHHHHHHHHHHHhcCCCeEEEEECCCCCccHH
Confidence 9997 789999999999999999999767789999999999999999999999865556899999998888988
Q ss_pred HHHHHHHHHhccCCEEEEeccCCCCc-ccccCcHHHHHHHHh
Q 009293 475 VLKDDFANALSEADQVVVSAVLVFWL-IIFAVSSFWLIMAIN 515 (538)
Q Consensus 475 ~~~~~~~~~~~~~D~vi~~~~~~~~~-~~~~~~~~~~~~~~~ 515 (538)
+...+|.+++..+|.|++++++++++ +..+.+.+.+.+.+.
T Consensus 361 ~~~~~~~~~l~~~d~v~l~~~~~~~~~~~~g~~~~~i~~~~~ 402 (448)
T TIGR01082 361 DLFDDFAKVLSDADELILLDIYAAGEEPINGIDGKSLARKIT 402 (448)
T ss_pred HHHHHHHHHHHhCCEEEEecccCCCCCCCCCCCHHHHHHHHh
Confidence 87788888777799999999988774 556888888877663
No 4
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=100.00 E-value=3.5e-60 Score=541.04 Aligned_cols=394 Identities=34% Similarity=0.456 Sum_probs=322.5
Q ss_pred ceEEEEeechhhHHHHHHHHHhCCCcEEEecCCCChhHHHHHHCCCeEEeCCCCCCcCCCCCCCCCCEEEEcCCCCCCCH
Q 009293 76 GWIHFVGIGGSGLSALAKLALKQGFEVSGSDLVWSSYMEGLLEAGANLHIGHSVSNIQGNDGSRFPNAVVASSAIPQDNV 155 (538)
Q Consensus 76 ~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~d~vvvsp~i~~~~~ 155 (538)
++|+|+|+|+||||+||++|+.+|++|.|+|.+..+..+.+.+.|+.+..++....+. .+|+||+|||||+++|
T Consensus 5 ~~i~viG~G~sG~salA~~L~~~G~~V~~sD~~~~~~~~~L~~~gi~~~~g~~~~~~~------~~d~vV~SpgI~~~~p 78 (809)
T PRK14573 5 LFYHFIGIGGIGMSALAHILLDRGYSVSGSDLSEGKTVEKLKAKGARFFLGHQEEHVP------EDAVVVYSSSISKDNV 78 (809)
T ss_pred ceEEEEEecHHhHHHHHHHHHHCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHcC------CCCEEEECCCcCCCCH
Confidence 5699999999999999999999999999999876555667878899998887544332 5899999999999999
Q ss_pred HHHHHHHCCCCeeeHHHHHHHHhcCCcEEEEeCCCCchHHHHHHHHHHHHcCCCeEEEeCCCCCCCCCCccccCCCcEEE
Q 009293 156 EILHAKSVGVPIYKRDYWLAKLTEKYNLIAVSGSHGKSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFV 235 (538)
Q Consensus 156 ~l~~a~~~gi~vi~~~~~l~~~~~~~~vI~VTGTnGKTTTt~ml~~iL~~~G~~v~~~~g~~~~~~~~~~~~~~~~~~~V 235 (538)
++++|++.|+|++++.+++.+..+..++|+||||||||||++||+++|+.+|+++...+|+.+.. +... ..+..+++|
T Consensus 79 ~~~~a~~~gi~v~~~~el~~~~~~~~~~IaITGTnGKTTTt~li~~iL~~~g~~~~~~~gG~~g~-~~~~-~~~~~d~~V 156 (809)
T PRK14573 79 EYLSAKSRGNRLVHRAELLAELMQEQISILVSGSHGKTTVSSLITAIFQEAKKDPSYAIGGLNQE-GLNG-YSGSSEYFV 156 (809)
T ss_pred HHHHHHHCCCcEEeHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHHhCCCCCeEEECCcccc-cccc-ccCCCCEEE
Confidence 99999999999999999998876656899999999999999999999999998754445553321 1111 234568999
Q ss_pred EeecCcceeeccccCcEEEEcCCCccccccC-CCHHHHHHHHHHHhhcccCCcEEEEcCCCHHHHHHHHHhhhhcCcccc
Q 009293 236 LEADEYDGCFLGLSPSVAVVTNLDWEHVDIF-EDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQDTGLKYS 314 (538)
Q Consensus 236 lE~~~~d~~~~~~~p~vaVITNI~~DHld~~-gs~e~~~~~k~~~~~~~~~~~~~Vln~dd~~~~~~~~~~~~~~~~~~~ 314 (538)
+|+++++..+..++|+++|||||++||+|+| +|+|+|+++|..++..+++++.+|+|.||+......
T Consensus 157 ~E~ss~~~~~~~~~P~iaViTNI~~DHLd~~~gs~e~y~~ak~~~~~~~~~~~~~V~N~Dd~~~~~~~------------ 224 (809)
T PRK14573 157 AEADESDGSLKHYTPEFSVITNIDNEHLSNFEGDRELLLASIQDFARKVQQINKCFYNGDCPRLKGCL------------ 224 (809)
T ss_pred EECCCCcchhheeecCEEEEeCCChhhhhhhcCCHHHHHHHHHHHHhcCCCCCEEEEeCCCHHHHhhc------------
Confidence 9999998767789999999999999999998 799999999999888777788999999998543210
Q ss_pred CCcccccCcccccCCCCceEEEeeccCCCcceEeeeeecCCCCeEEEEEECCeeeeEEEeCCCchhHHHHHHHHHHHHHH
Q 009293 315 GGVVSNQSSDLWGQGHDYKIITYGFSSFNDWYAESVCPNVQGGSDYILCERGRPLAQISLQIPGVHNVLNSLAVIATVLT 394 (538)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~d~~~~~i~~~~~~g~~f~~~~~~~~~~~~~l~l~G~hnv~NalaAia~a~~ 394 (538)
+..+|++...+++...++... ..+..|.+...+.....+.++++|.||++|+++|++++..
T Consensus 225 ------------------~~~~~g~~~~~~~~~~~~~~~-~~~~~f~l~~~~~~~~~~~l~l~G~hn~~Na~aAia~~~~ 285 (809)
T PRK14573 225 ------------------QGHSYGFSSSCDLHILSYYQE-GWRSYFSAKFLGVVYQDIELNLVGMHNVANAAAAMGIALT 285 (809)
T ss_pred ------------------ccEEEccCCCCcEEEEEEEec-CCeEEEEEEECCceEEEEEeccccHhhHHHHHHHHHHHHH
Confidence 113455443345544333221 1223466554433224678899999999999999999999
Q ss_pred hcCCccCCcccHHHHHHHhccCCCCCCceEEEeeeCCeEEEEECCCCHHHHHHHHHHHHhhCCCCeEEEEEccCCCCchH
Q 009293 395 LIGDKRQSHESIACLKLPLSKFMGVSRRFDLIGTIYGCHIYDDFAHHPTEVRAVLQAARQRFPNKALIAVFQPHTYSRLV 474 (538)
Q Consensus 395 lgi~~~~~~~~~~~I~~~L~~f~~~~gR~E~v~~~~g~~ii~D~Ahnp~s~~a~l~~l~~~~~~~r~i~V~g~~~~~r~~ 474 (538)
+|++ .+.|+++|++|++++||||++...+++.+|+||||||++++++++++++.++.+|+++||++++|++.+
T Consensus 286 lgi~-------~~~i~~~L~~f~~~~~R~e~~~~~~~~~~i~D~ahnP~~~~a~l~~l~~~~~~~rli~vf~~~~~~~~~ 358 (809)
T PRK14573 286 LGID-------EGAIRNALKGFSGVQRRLERKNSSETFLFLEDYAHHPSEISCTLRAVRDAVGLRRIIAICQPHRFSRLR 358 (809)
T ss_pred cCCC-------HHHHHHHHHhCCCCCCCCEEEeccCCcEEEEECCCCHHHHHHHHHHHHhhcCCCEEEEEEcCCcchhHH
Confidence 9987 789999999999999999999765678999999999999999999999876668899999999999988
Q ss_pred HHHHHHHHHhccCCEEEEeccCCCCc-ccccCcHHHHHHHHh
Q 009293 475 VLKDDFANALSEADQVVVSAVLVFWL-IIFAVSSFWLIMAIN 515 (538)
Q Consensus 475 ~~~~~~~~~~~~~D~vi~~~~~~~~~-~~~~~~~~~~~~~~~ 515 (538)
+...+|..+++.+|.+++|+++++++ +..+++.+++.+.+.
T Consensus 359 ~~~~~~~~~l~~~d~vilt~~~~~~e~~~~~~~~~~L~~~~~ 400 (809)
T PRK14573 359 ECLDSFPSAFQDADEVILTDVYSAGEEPEDSISYQKLAEAIS 400 (809)
T ss_pred HHHHHHHHHHHHCCEEEECCccCCCCCCCCCCCHHHHHHHHh
Confidence 87788888888899999999998886 556889988887663
No 5
>TIGR01081 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase. Alternate name: murein tripeptide ligase
Probab=100.00 E-value=1.8e-59 Score=503.03 Aligned_cols=378 Identities=31% Similarity=0.469 Sum_probs=295.2
Q ss_pred eEEEEeechhhHHHHHHHHHhCCCcEEEecCCCCh-hHHHHHHCCCeEEeCCCCCCcCCCCCCCCCCEEEEcCCCCCCCH
Q 009293 77 WIHFVGIGGSGLSALAKLALKQGFEVSGSDLVWSS-YMEGLLEAGANLHIGHSVSNIQGNDGSRFPNAVVASSAIPQDNV 155 (538)
Q Consensus 77 ~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~~-~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~d~vvvsp~i~~~~~ 155 (538)
+|||+|+||+||++||++|+.+|++|.|+|..... ..+.+.+.|+.+..+++...+. +.+|+||+||||++++|
T Consensus 1 ~~hfigigG~gm~~la~~l~~~G~~V~~~D~~~~~~~~~~l~~~gi~~~~~~~~~~~~-----~~~d~vV~SpgI~~~~~ 75 (448)
T TIGR01081 1 HIHILGICGTFMGGLAMIAKQLGHEVTGSDANVYPPMSTQLEAQGIEIIEGFDAAQLE-----PKPDLVVIGNAMKRGNP 75 (448)
T ss_pred CEEEEEECHHhHHHHHHHHHhCCCEEEEECCCCCcHHHHHHHHCCCEEeCCCCHHHCC-----CCCCEEEECCCCCCCCH
Confidence 38999999999999999999999999999976533 2345777799998887654432 24899999999999999
Q ss_pred HHHHHHHCCCCeeeHHHHHHHH-hcCCcEEEEeCCCCchHHHHHHHHHHHHcCCCeEEEeCCCCCCCCCCccccCCCcEE
Q 009293 156 EILHAKSVGVPIYKRDYWLAKL-TEKYNLIAVSGSHGKSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNF 234 (538)
Q Consensus 156 ~l~~a~~~gi~vi~~~~~l~~~-~~~~~vI~VTGTnGKTTTt~ml~~iL~~~G~~v~~~~g~~~~~~~~~~~~~~~~~~~ 234 (538)
++++|++.|+||+++.+++.+. .+..++|+||||||||||++||+++|+.+|+++...+|.....++. +...++.+++
T Consensus 76 ~~~~a~~~~i~v~~~~e~~~~~~~~~~~~I~ITGT~GKTTTt~li~~iL~~~g~~~~~~~~~~~gn~G~-~~~~~~~~~~ 154 (448)
T TIGR01081 76 CVEAVLNLNLPYTSGPQWLHDFVLHDRWVLAVAGTHGKTTTASMLAWVLEQCGLKPGFLIGGVPGNFGV-SARLGESPFF 154 (448)
T ss_pred HHHHHHHCCCCEEeHHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHhcCCCCcEEeCcccccCcc-ccccCCCCEE
Confidence 9999999999999999998774 3334499999999999999999999999998865433332222221 1123456899
Q ss_pred EEeecCcceee-------ccccCcEEEEcCCCccccccCCCHHHHHHHHHHHhhcccCCcEEEEcCCCHHHHHHHHHhhh
Q 009293 235 VLEADEYDGCF-------LGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQ 307 (538)
Q Consensus 235 VlE~~~~d~~~-------~~~~p~vaVITNI~~DHld~~gs~e~~~~~k~~~~~~~~~~~~~Vln~dd~~~~~~~~~~~~ 307 (538)
|+|++++|... ..++|+++|||||++||+|||+|+|+|+++|.+++..+++.+.+|+|.||+.+..+....+
T Consensus 155 V~E~~s~~~~~~~~l~~~~~~~P~iaVITNI~~DHld~~~t~e~~~~~K~~i~~~~~~~~~~i~n~dd~~~~~~~~~~~- 233 (448)
T TIGR01081 155 VIEADEYDTAFFDKRSKFVHYRPRTLVLNNLEFDHADIFDDLKAIQRQFHHLVRTVPGEGLILCPGRDQSLKDTLAKGC- 233 (448)
T ss_pred EEEccCcCccccccccceeecCCCEEEEeCCChHhccccCCHHHHHHHHHHHHHhCCCCCEEEEeCCCHHHHHHHHhcc-
Confidence 99999988652 2479999999999999999999999999999999987777789999999998765543211
Q ss_pred hcCccccCCcccccCcccccCCCCceEEEeeccCCCcceEeeeeecCCCCeEEEEEECCeeeeEEEeCCCchhHHHHHHH
Q 009293 308 DTGLKYSGGVVSNQSSDLWGQGHDYKIITYGFSSFNDWYAESVCPNVQGGSDYILCERGRPLAQISLQIPGVHNVLNSLA 387 (538)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~d~~~~~i~~~~~~g~~f~~~~~~~~~~~~~l~l~G~hnv~Nala 387 (538)
..++.+|+. ..+|....+. .++..|.+...+.....+.++++|.||++|+++
T Consensus 234 -----------------------~~~~~~~~~--~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~l~G~hn~~Na~~ 285 (448)
T TIGR01081 234 -----------------------WSEQEFFGE--QGEWQAEKIT---ADGSHFDVLLDGEKVGEVKWSLVGRHNMHNALM 285 (448)
T ss_pred -----------------------CCCeEEECC--CCCEEEEEEe---cCCcEEEEEECCceeEEEEecCCcHHHHHHHHH
Confidence 013445542 2345544442 134456555443322356789999999999999
Q ss_pred HHHHHHHhcCCccCCcccHHHHHHHhccCCCCCCceEEEeeeCCeEEEEECCCCHHHHHHHHHHHHhhCCCCeEEEEEcc
Q 009293 388 VIATVLTLIGDKRQSHESIACLKLPLSKFMGVSRRFDLIGTIYGCHIYDDFAHHPTEVRAVLQAARQRFPNKALIAVFQP 467 (538)
Q Consensus 388 Aia~a~~lgi~~~~~~~~~~~I~~~L~~f~~~~gR~E~v~~~~g~~ii~D~Ahnp~s~~a~l~~l~~~~~~~r~i~V~g~ 467 (538)
|++++..+|++ .+.++++|++|+++|||||++...+++.+|+||||||++++++++++++.++.+|+++|||+
T Consensus 286 A~a~~~~lgi~-------~~~i~~~L~~~~~~~~R~e~~~~~~g~~ii~D~ahNp~s~~~~l~~l~~~~~~~~ii~I~g~ 358 (448)
T TIGR01081 286 AIAAARHVGVA-------IEDACEALGSFVNAKRRLELKGEANGITVYDDFAHHPTAIEATLQGLRQKVGGARILAVLEP 358 (448)
T ss_pred HHHHHHHcCCC-------HHHHHHHHHhCCCCCcceEEEEecCCeEEEEeCCCCHHHHHHHHHHHHHhcCCCeEEEEECC
Confidence 99999999987 78999999999999999999975568999999999999999999999976555688999998
Q ss_pred CCCCch-HHHHHHHHHHhccCCEEEEeccC
Q 009293 468 HTYSRL-VVLKDDFANALSEADQVVVSAVL 496 (538)
Q Consensus 468 ~~~~r~-~~~~~~~~~~~~~~D~vi~~~~~ 496 (538)
++..+. ....+.+..+++.+|.|++++..
T Consensus 359 ~~~~~~lg~~~~~l~~~~~~~d~vi~~~~~ 388 (448)
T TIGR01081 359 RSNTMKLGVHKDDLAPSLGRADQVFLYQPG 388 (448)
T ss_pred CcchhhhhhHHHHHHHHHHhCCEEEEcCCC
Confidence 753222 11234566666779999999753
No 6
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=100.00 E-value=1.6e-55 Score=471.03 Aligned_cols=357 Identities=24% Similarity=0.340 Sum_probs=276.7
Q ss_pred eEEEEeechhhHHHHHHHHHhCCCcEEEecCCCChhHH---HHH--HCCCeEEeCCCCCCcCCCCCCCCCCEEEEcCCCC
Q 009293 77 WIHFVGIGGSGLSALAKLALKQGFEVSGSDLVWSSYME---GLL--EAGANLHIGHSVSNIQGNDGSRFPNAVVASSAIP 151 (538)
Q Consensus 77 ~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~~~~~---~~~--~~Ga~~~~~~~~~~~~~~~~~~~~d~vvvsp~i~ 151 (538)
+|+|+|+|+||| ++|++|+.+|++|.|+|.+..+... .+. +.|+.+..++....+. .+|+||+|||||
T Consensus 1 ~~~~iG~G~~G~-a~a~~l~~~G~~V~~sD~~~~~~~~~~~~~~~~~~gi~~~~g~~~~~~~------~~d~vv~sp~i~ 73 (433)
T TIGR01087 1 KILILGLGKTGR-AVARFLHKKGAEVTVTDLKPNEELEPSMGQLRLNEGSVLHTGLHLEDLN------NADLVVKSPGIP 73 (433)
T ss_pred CEEEEEeCHhHH-HHHHHHHHCCCEEEEEeCCCCccchhHHHHHhhccCcEEEecCchHHhc------cCCEEEECCCCC
Confidence 479999999999 7899999999999999976543322 222 3599998886654443 589999999999
Q ss_pred CCCHHHHHHHHCCCCeeeHHHHHHHHhcCCcEEEEeCCCCchHHHHHHHHHHHHcCCCeEEEeCCCCCCCCCCcccc-CC
Q 009293 152 QDNVEILHAKSVGVPIYKRDYWLAKLTEKYNLIAVSGSHGKSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFY-GG 230 (538)
Q Consensus 152 ~~~~~l~~a~~~gi~vi~~~~~l~~~~~~~~vI~VTGTnGKTTTt~ml~~iL~~~G~~v~~~~g~~~~~~~~~~~~~-~~ 230 (538)
+++|++++|++.|+|++++.++++... +.++|+||||||||||++||+++|+.+|+++ ...|+... +..+... ++
T Consensus 74 ~~~p~~~~a~~~~i~i~~~~e~~~~~~-~~~~I~VTGT~GKTTTt~li~~iL~~~g~~~-~~~gnig~--~~~~~~~~~~ 149 (433)
T TIGR01087 74 PDHPLVQAAAKRGIPVVGDIELFLRLV-PLPVVAITGTNGKTTTTSLLYHLLKAAGLKA-FLGGNIGT--PALEVLDQEG 149 (433)
T ss_pred CCCHHHHHHHHCCCcEEEHHHHHHhhc-CCCEEEEECCCCHHHHHHHHHHHHHhcCCCe-EEECccCH--HHHHHHhccC
Confidence 999999999999999999999998876 6789999999999999999999999999873 34443211 0001111 45
Q ss_pred CcEEEEeecCccee-eccccCcEEEEcCCCccccccCCCHHHHHHHHHHHhhcccCCcEEEEcCCCHHHHHHHHHhhhhc
Q 009293 231 GKNFVLEADEYDGC-FLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQDT 309 (538)
Q Consensus 231 ~~~~VlE~~~~d~~-~~~~~p~vaVITNI~~DHld~~gs~e~~~~~k~~~~~~~~~~~~~Vln~dd~~~~~~~~~~~~~~ 309 (538)
.+++|+|.++++.. ...++|+++|||||++||+|||||+|+|+++|.++++..++++.+|+|.||+....+....
T Consensus 150 ~~~~V~E~~~~~l~~~~~~~p~iaViTNI~~DHld~~gs~e~~~~~K~~i~~~~~~~~~~i~n~dd~~~~~~~~~~---- 225 (433)
T TIGR01087 150 AELYVLELSSFQLETTESLRPEIALILNISEDHLDWHGSFEDYVAAKLKIFARQTEGDVAVLNADDPRFARLAQKS---- 225 (433)
T ss_pred CCEEEEEcChhHhcCCcccCCCEEEEecCChhHhcccCCHHHHHHHHHHHHhcCCCCCEEEEECCCHHHHHhhhhc----
Confidence 68999999988765 3357999999999999999999999999999999999888889999999998765543221
Q ss_pred CccccCCcccccCcccccCCCCceEEEeeccCCCcceEeeeeecCCCCeEEEEEECCeeeeEEEeCCCchhHHHHHHHHH
Q 009293 310 GLKYSGGVVSNQSSDLWGQGHDYKIITYGFSSFNDWYAESVCPNVQGGSDYILCERGRPLAQISLQIPGVHNVLNSLAVI 389 (538)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~d~~~~~i~~~~~~g~~f~~~~~~~~~~~~~l~l~G~hnv~NalaAi 389 (538)
..++++|+.....+... ... .++..|.. ..++++++|.||++|+++|+
T Consensus 226 ---------------------~~~~~~~g~~~~~~~~~---~~~-~~~~~~~~-------~~~~l~l~G~hn~~Na~aAi 273 (433)
T TIGR01087 226 ---------------------KAQVIWFSVEKDAERGL---CIR-DGGLYLKP-------NDLEGSLLGLHNAENILAAI 273 (433)
T ss_pred ---------------------CceEEEEeCCccCCCce---EEE-CCEEEEec-------cccccCCCcHHHHHHHHHHH
Confidence 14677887543222211 110 11111110 13678999999999999999
Q ss_pred HHHHHhcCCccCCcccHHHHHHHhccCCCCCCceEEEeeeCCeEEEEEC-CCCHHHHHHHHHHHHhhCCCCeEEEEEccC
Q 009293 390 ATVLTLIGDKRQSHESIACLKLPLSKFMGVSRRFDLIGTIYGCHIYDDF-AHHPTEVRAVLQAARQRFPNKALIAVFQPH 468 (538)
Q Consensus 390 a~a~~lgi~~~~~~~~~~~I~~~L~~f~~~~gR~E~v~~~~g~~ii~D~-Ahnp~s~~a~l~~l~~~~~~~r~i~V~g~~ 468 (538)
+++..+|++ .+.|+++|++|++++||||++...+|+.+|+|| +|||+++.++++.+. +++++|+|..
T Consensus 274 a~a~~lgi~-------~~~i~~~L~~f~g~~~R~e~v~~~~g~~~idD~~atn~~a~~~al~~~~-----~~ii~I~Gg~ 341 (433)
T TIGR01087 274 ALAKSLGLN-------LEAILEALRSFKGLPHRLEYVGQKNGVHFYNDSKATNVHATLAALSAFD-----NPVILIVGGD 341 (433)
T ss_pred HHHHHcCCC-------HHHHHHHHHhCCCCCCceEEEEEECCEEEEEcCCCCCHHHHHHHHHhCC-----CCEEEEEcCC
Confidence 999999997 799999999999999999999766789999996 999999999988762 3688999864
Q ss_pred CCCchHHHHHHHHHHhc-cCCEEEEecc
Q 009293 469 TYSRLVVLKDDFANALS-EADQVVVSAV 495 (538)
Q Consensus 469 ~~~r~~~~~~~~~~~~~-~~D~vi~~~~ 495 (538)
. +++++ ..+.+.+. ..+.|++.+.
T Consensus 342 ~--~~~d~-~~~~~~l~~~~~~v~~~G~ 366 (433)
T TIGR01087 342 D--KGADF-SPLAPAAAGKVKAVLAIGE 366 (433)
T ss_pred C--CCCCH-HHHHHHHHhhCCEEEEECC
Confidence 3 34443 44555443 4567887654
No 7
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=1.4e-54 Score=465.51 Aligned_cols=365 Identities=20% Similarity=0.286 Sum_probs=280.1
Q ss_pred ceEEEEeechhhHHHHHHHHHhCCCcEEEecCCCCh-hHHHHHH--CCCeEEeC-CCCCCcCCCCCCCCCCEEEEcCCCC
Q 009293 76 GWIHFVGIGGSGLSALAKLALKQGFEVSGSDLVWSS-YMEGLLE--AGANLHIG-HSVSNIQGNDGSRFPNAVVASSAIP 151 (538)
Q Consensus 76 ~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~~-~~~~~~~--~Ga~~~~~-~~~~~~~~~~~~~~~d~vvvsp~i~ 151 (538)
+.|+|+|+|+|||+ +|++|+.+|++|.|+|.+... ..+.+.+ .|+.+..+ +....+. .+|+||+|||||
T Consensus 7 ~~~~v~G~G~sG~s-~a~~L~~~G~~v~~~D~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~------~~d~vV~sp~i~ 79 (448)
T PRK03803 7 GLHIVVGLGKTGLS-VVRFLARQGIPFAVMDSREQPPGLDTLAREFPDVELRCGGFDCELLV------QASEIIISPGLA 79 (448)
T ss_pred CeEEEEeecHhHHH-HHHHHHhCCCeEEEEeCCCCchhHHHHHhhcCCcEEEeCCCChHHhc------CCCEEEECCCCC
Confidence 57899999999999 899999999999999976442 3345655 39988886 5554443 589999999999
Q ss_pred CCCHHHHHHHHCCCCeeeHHHHHHHHhcCCcEEEEeCCCCchHHHHHHHHHHHHcCCCeEEEeCCCCCCCCCCccccCCC
Q 009293 152 QDNVEILHAKSVGVPIYKRDYWLAKLTEKYNLIAVSGSHGKSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGG 231 (538)
Q Consensus 152 ~~~~~l~~a~~~gi~vi~~~~~l~~~~~~~~vI~VTGTnGKTTTt~ml~~iL~~~G~~v~~~~g~~~~~~~~~~~~~~~~ 231 (538)
+++|++++|++.|++++++.+++.+.. +.++|+|||||||||||+||++||+.+|+++ ...|+..... .+...+..
T Consensus 80 ~~~p~~~~a~~~~i~i~~~~el~~~~~-~~~~I~VTGT~GKTTTt~li~~iL~~~g~~~-~~ggnig~p~--~~~~~~~~ 155 (448)
T PRK03803 80 LDTPALRAAAAMGIEVIGDIELFAREA-KAPVIAITGSNGKSTVTTLVGEMAKAAGKRV-AVGGNIGTPA--LDLLSDDP 155 (448)
T ss_pred CCCHHHHHHHHCCCcEEEHHHHHHHhc-CCCEEEEECCCcHHHHHHHHHHHHHhcCCCe-EEecCcCHHH--HHHhcCCC
Confidence 999999999999999999999998876 5689999999999999999999999999863 3334321110 11112356
Q ss_pred cEEEEeecCcce-eeccccCcEEEEcCCCccccccCCCHHHHHHHHHHHhhcccCCcEEEEcCCCHHHHHHHHHhhhhcC
Q 009293 232 KNFVLEADEYDG-CFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQDTG 310 (538)
Q Consensus 232 ~~~VlE~~~~d~-~~~~~~p~vaVITNI~~DHld~~gs~e~~~~~k~~~~~~~~~~~~~Vln~dd~~~~~~~~~~~~~~~ 310 (538)
+++|+|.++++. ....++|+++|||||++||+|||||+|+|+++|.++++. .+.+|+|.||+....+...
T Consensus 156 ~~~V~E~ss~~l~~~~~~~P~iaVITNI~~DHld~~gs~e~~~~~K~~i~~~---~~~~V~n~dd~~~~~~~~~------ 226 (448)
T PRK03803 156 ELYVLELSSFQLETTHSLNAEVATVLNISEDHMDRYSDLEAYHQAKHRIYRG---AKQVVFNRDDALTRPLVPD------ 226 (448)
T ss_pred CEEEEEcChhhhCcCcccCccEEEEecCChhHcccCCCHHHHHHHHHHHHhC---CCeEEEeCCCHHHHHHhhc------
Confidence 899999999873 344679999999999999999999999999999999863 4789999999987655321
Q ss_pred ccccCCcccccCcccccCCCCceEEEeeccCC--CcceEeeeeecCCCCeEEEEEECCeeeeEEEeCCCchhHHHHHHHH
Q 009293 311 LKYSGGVVSNQSSDLWGQGHDYKIITYGFSSF--NDWYAESVCPNVQGGSDYILCERGRPLAQISLQIPGVHNVLNSLAV 388 (538)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~d~~~~~i~~~~~~g~~f~~~~~~~~~~~~~l~l~G~hnv~NalaA 388 (538)
..++++|+.... .++.. .. .++..|.+.........++++++|.||++|+++|
T Consensus 227 --------------------~~~~~~~g~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~l~l~G~Hn~~NalaA 281 (448)
T PRK03803 227 --------------------NQPCLSFGLNAPDFDEWGL---RE--GDGETYLAHGFERLMPVRELKLRGSHNLANALAA 281 (448)
T ss_pred --------------------CCcEEEEeCCCCCcCceEE---Ee--cCCeEEEEeCCceEEehhccCCCCHHHHHHHHHH
Confidence 134667775421 12221 11 1233343321111112357899999999999999
Q ss_pred HHHHHHhcCCccCCcccHHHHHHHhccCCCCCCceEEEeeeCCeEEEEEC-CCCHHHHHHHHHHHHhhCCCCeEEEEEcc
Q 009293 389 IATVLTLIGDKRQSHESIACLKLPLSKFMGVSRRFDLIGTIYGCHIYDDF-AHHPTEVRAVLQAARQRFPNKALIAVFQP 467 (538)
Q Consensus 389 ia~a~~lgi~~~~~~~~~~~I~~~L~~f~~~~gR~E~v~~~~g~~ii~D~-Ahnp~s~~a~l~~l~~~~~~~r~i~V~g~ 467 (538)
++++..+|++ .+.|+++|++|+++|||||++...+++.+|+|| +|||+|+.++++.+++. +++|+++|+|.
T Consensus 282 ia~a~~lgi~-------~~~i~~~L~~f~g~~~R~e~v~~~~gv~~idDs~atN~~a~~~al~~l~~~-~~~~iilI~Gg 353 (448)
T PRK03803 282 LALGEAAGLP-------KEAMLEVLRTFTGLPHRCEWVREVAGVDYYNDSKGTNVGATVAAIEGLGAH-IQGKLVLIAGG 353 (448)
T ss_pred HHHHHHcCCC-------HHHHHHHHhhCCCCCCceEEEEEeCCeEEEEcCCcCCHHHHHHHHHhhhhc-CCCCEEEEECC
Confidence 9999999997 799999999999999999999876789999995 99999999999998753 33578999996
Q ss_pred CCCCchHHHHHHHHH-HhccCCEEEEeccC
Q 009293 468 HTYSRLVVLKDDFAN-ALSEADQVVVSAVL 496 (538)
Q Consensus 468 ~~~~r~~~~~~~~~~-~~~~~D~vi~~~~~ 496 (538)
.. +++++.+ +.+ +.+.++.+++++..
T Consensus 354 ~~--k~~d~~~-l~~~l~~~~~~vil~G~~ 380 (448)
T PRK03803 354 DG--KGADFSP-LREPVAKYVRAVVLIGRD 380 (448)
T ss_pred CC--CCCCHHH-HHHHHHhhCCEEEEECCC
Confidence 43 3444433 434 33468999998654
No 8
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=5e-54 Score=459.52 Aligned_cols=362 Identities=21% Similarity=0.234 Sum_probs=276.6
Q ss_pred ceEEEEeechhhHHHHHHHHHhCC-CcEEEecCCCChh-HHHHHHCCCeEEeCC-CCCCcCCCCCCCCCCEEEEcCCCCC
Q 009293 76 GWIHFVGIGGSGLSALAKLALKQG-FEVSGSDLVWSSY-MEGLLEAGANLHIGH-SVSNIQGNDGSRFPNAVVASSAIPQ 152 (538)
Q Consensus 76 ~~v~vlG~G~sG~~~la~~l~~~G-~~v~g~D~~~~~~-~~~~~~~Ga~~~~~~-~~~~~~~~~~~~~~d~vvvsp~i~~ 152 (538)
++|+|+|+|+||||+++.+++..| ++|.|+|.+.... .+.+. .|+.+..++ ..+.+. .+|+||+|||||+
T Consensus 8 ~~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D~~~~~~~~~~l~-~g~~~~~g~~~~~~~~------~~d~vV~SpgI~~ 80 (438)
T PRK04663 8 KNVVVVGLGITGLSVVKHLRKYQPQLTVKVIDTRETPPGQEQLP-EDVELHSGGWNLEWLL------EADLVVTNPGIAL 80 (438)
T ss_pred ceEEEEeccHHHHHHHHHHHhcCCCCeEEEEeCCCCchhHHHhh-cCCEEEeCCCChHHhc------cCCEEEECCCCCC
Confidence 469999999999999999888777 9999999765432 23453 499998884 544443 5899999999999
Q ss_pred CCHHHHHHHHCCCCeeeHHHHHHHHhcCCcEEEEeCCCCchHHHHHHHHHHHHcCCCeEEEeCCCCCCCCCCccccCCCc
Q 009293 153 DNVEILHAKSVGVPIYKRDYWLAKLTEKYNLIAVSGSHGKSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGK 232 (538)
Q Consensus 153 ~~~~l~~a~~~gi~vi~~~~~l~~~~~~~~vI~VTGTnGKTTTt~ml~~iL~~~G~~v~~~~g~~~~~~~~~~~~~~~~~ 232 (538)
++|++++|++.|+|++++.+++++.. +.++|+||||||||||++||+++|+.+|.++ .+.|+... +......++.+
T Consensus 81 ~~p~~~~a~~~gi~i~~~~el~~~~~-~~~~I~VTGTnGKTTTt~ll~~iL~~~g~~~-~~~gniG~--~~~~~~~~~~~ 156 (438)
T PRK04663 81 ATPEIQQVLAAGIPVVGDIELFAWAV-DKPVIAITGSNGKSTVTDLTGVMAKAAGVKV-AVGGNIGV--PALDLLEQDAE 156 (438)
T ss_pred CCHHHHHHHHCCCcEEEHHHHHHhhc-CCCEEEEeCCCCHHHHHHHHHHHHHHCCCCE-EEEcccCH--HHHhhhcCCCC
Confidence 99999999999999999999988775 4689999999999999999999999999874 34444211 00011124568
Q ss_pred EEEEeecCccee-eccccCcEEEEcCCCccccccCCCHHHHHHHHHHHhhcccCCcEEEEcCCCHHHHHHHHHhhhhcCc
Q 009293 233 NFVLEADEYDGC-FLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQDTGL 311 (538)
Q Consensus 233 ~~VlE~~~~d~~-~~~~~p~vaVITNI~~DHld~~gs~e~~~~~k~~~~~~~~~~~~~Vln~dd~~~~~~~~~~~~~~~~ 311 (538)
++|+|+++++.. ...++|+++|||||++||+|+|||+|+|+++|.+++.. .+.+|+|.||+.......
T Consensus 157 ~~V~E~ss~~l~~~~~~~p~iavitNi~~dHld~~gs~e~y~~aK~~i~~~---~~~~v~n~dd~~~~~~~~-------- 225 (438)
T PRK04663 157 LYVLELSSFQLETTSSLKLKAAAFLNLSEDHMDRYQGMEDYRQAKLRIFDH---AELAVVNRDDKQTYPDHA-------- 225 (438)
T ss_pred EEEEEcChhhhccCcccCCCEEEEecCChhhCcccCCHHHHHHHHHHHHhC---CCEEEEeCCCHHHHhhhc--------
Confidence 999999988643 33589999999999999999999999999999999864 368999999987533211
Q ss_pred cccCCcccccCcccccCCCCceEEEeeccCCCcceEeeeeecCCCCeEEEEEECCeeeeEEEeCCCchhHHHHHHHHHHH
Q 009293 312 KYSGGVVSNQSSDLWGQGHDYKIITYGFSSFNDWYAESVCPNVQGGSDYILCERGRPLAQISLQIPGVHNVLNSLAVIAT 391 (538)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~d~~~~~i~~~~~~g~~f~~~~~~~~~~~~~l~l~G~hnv~NalaAia~ 391 (538)
..++++|+... .++.+.. .++..|.+.........++++++|.||++|+++|+++
T Consensus 226 -------------------~~~~~~~g~~~-~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~l~G~hNv~NalaAia~ 280 (438)
T PRK04663 226 -------------------ELQLVTFGFDQ-QDFGLAQ-----HQGREWLADNGQPVLASAELKLVGRHNVANVLVVLAL 280 (438)
T ss_pred -------------------CCcEEEEecCC-CCCCeEe-----cCCeEEEEeCCceeeehhhcCCcchhhHHHHHHHHHH
Confidence 13567887643 2443321 1234454432221123467899999999999999999
Q ss_pred HHHhcCCccCCcccHHHHHHHhccCCCCCCceEEEeeeCCeEEEEE-CCCCHHHHHHHHHHHHhhCCCCeEEEEEccCCC
Q 009293 392 VLTLIGDKRQSHESIACLKLPLSKFMGVSRRFDLIGTIYGCHIYDD-FAHHPTEVRAVLQAARQRFPNKALIAVFQPHTY 470 (538)
Q Consensus 392 a~~lgi~~~~~~~~~~~I~~~L~~f~~~~gR~E~v~~~~g~~ii~D-~Ahnp~s~~a~l~~l~~~~~~~r~i~V~g~~~~ 470 (538)
+..+|++ +++|+++|++|++++||||++...+++.+|+| |++||+|+.++++.+. +.+|+++|+|.+..
T Consensus 281 a~~lGi~-------~~~i~~~L~~f~g~~~R~e~v~~~~g~~~idDs~~tn~~s~~~Al~~~~---~~~~~i~IlGg~~~ 350 (438)
T PRK04663 281 LDAAGVD-------YRKALDALKSYTGLTHRCQVVADNHGIKWVNDSKATNVASTLAALSGLE---IEGKLYLLVGGVGK 350 (438)
T ss_pred HHHcCCC-------HHHHHHHHHhCCCCCCceEEeeeeCCcEEEeCCCcCCHHHHHHHHHhcc---cCCcEEEEECCccC
Confidence 9999997 79999999999999999999976678999999 6999999999998874 23579999997532
Q ss_pred CchHHHHHHHHHHhc-cCCEEEEeccCC
Q 009293 471 SRLVVLKDDFANALS-EADQVVVSAVLV 497 (538)
Q Consensus 471 ~r~~~~~~~~~~~~~-~~D~vi~~~~~~ 497 (538)
. .++ .++.+.+. ..+.|++++...
T Consensus 351 ~--~~~-~~l~~~~~~~~~~vi~~G~~~ 375 (438)
T PRK04663 351 G--ADF-SPLKPVLATLNLQLCCFGEDG 375 (438)
T ss_pred C--CCH-HHHHHHHHhhCcEEEEECCCH
Confidence 2 222 35555443 234788877543
No 9
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=3.3e-54 Score=449.39 Aligned_cols=362 Identities=25% Similarity=0.291 Sum_probs=276.8
Q ss_pred ceEEEEeechhhHHHHHHHHHhCCCcEEEecCCCChh---HHHHHHCCCeEEeCCCCC-CcCCCCCCCCCCEEEEcCCCC
Q 009293 76 GWIHFVGIGGSGLSALAKLALKQGFEVSGSDLVWSSY---MEGLLEAGANLHIGHSVS-NIQGNDGSRFPNAVVASSAIP 151 (538)
Q Consensus 76 ~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~~~---~~~~~~~Ga~~~~~~~~~-~~~~~~~~~~~d~vvvsp~i~ 151 (538)
++|+|+|+|+||+++ |++|+++|++|.++|.++.+- ...+...|+.+..++... +. ..+|+||+|||||
T Consensus 8 ~kv~V~GLG~sG~a~-a~~L~~~G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~------~~~d~vV~SPGi~ 80 (448)
T COG0771 8 KKVLVLGLGKSGLAA-ARFLLKLGAEVTVSDDRPAPEGLAAQPLLLEGIEVELGSHDDEDL------AEFDLVVKSPGIP 80 (448)
T ss_pred CEEEEEecccccHHH-HHHHHHCCCeEEEEcCCCCccchhhhhhhccCceeecCccchhcc------ccCCEEEECCCCC
Confidence 569999999999987 788899999999999775541 123446788888885544 22 2689999999999
Q ss_pred CCCHHHHHHHHCCCCeeeHHHHHHHHhcCCcEEEEeCCCCchHHHHHHHHHHHHcCCCeEEEeCCCCCCCCCCccccCCC
Q 009293 152 QDNVEILHAKSVGVPIYKRDYWLAKLTEKYNLIAVSGSHGKSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGG 231 (538)
Q Consensus 152 ~~~~~l~~a~~~gi~vi~~~~~l~~~~~~~~vI~VTGTnGKTTTt~ml~~iL~~~G~~v~~~~g~~~~~~~~~~~~~~~~ 231 (538)
+++|.+++|+..|++|+++.+++.+.....|+|+|||||||||||+||++||+++|+++ ...||.......-.....+.
T Consensus 81 ~~~p~v~~A~~~gi~i~~dieL~~r~~~~~p~vaITGTNGKTTTTsli~~~l~~~G~~~-~lgGNIG~p~l~~~~~~~~~ 159 (448)
T COG0771 81 PTHPLVEAAKAAGIEIIGDIELFYRLSGEAPIVAITGTNGKTTTTSLIAHLLKAAGLDA-LLGGNIGTPALELLEQAEPA 159 (448)
T ss_pred CCCHHHHHHHHcCCcEEeHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHHhcCCCc-eeccccCccHHHhhcccCCC
Confidence 99999999999999999999999887545679999999999999999999999999974 33333221111000011246
Q ss_pred cEEEEeecCcceeec-cccCcEEEEcCCCccccccCCCHHHHHHHHHHHhhcccCCcEEEEcCCCHHHHHHHHHhhhhcC
Q 009293 232 KNFVLEADEYDGCFL-GLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQDTG 310 (538)
Q Consensus 232 ~~~VlE~~~~d~~~~-~~~p~vaVITNI~~DHld~~gs~e~~~~~k~~~~~~~~~~~~~Vln~dd~~~~~~~~~~~~~~~ 310 (538)
+++|+|.+++|+... .++|++++||||++||||||+|+|+|.++|.+++..+.+ .+|+|.||+....+.....
T Consensus 160 d~~VlElSSfQL~~~~~~~P~iavilNi~~DHLD~H~s~e~Y~~aK~~i~~~~~~--~~Vin~dd~~~~~~~~~~~---- 233 (448)
T COG0771 160 DVYVLELSSFQLETTSSLRPEIAVILNISEDHLDRHGSMENYAAAKLRILEGQTE--VAVINADDAYLKTLADEAT---- 233 (448)
T ss_pred CEEEEEccccccccCccCCccEEEEecCCHHHhhhccCHHHHHHHHHHHHcCCcc--EEEEeCCcHHHhhhhhhcc----
Confidence 799999999998654 689999999999999999999999999999999988655 8999999998877665431
Q ss_pred ccccCCcccccCcccccCCCCceEEEeeccCCC--cceEeeeeecCCCCeEEEEEECCee-eeEEEeCCCchhHHHHHHH
Q 009293 311 LKYSGGVVSNQSSDLWGQGHDYKIITYGFSSFN--DWYAESVCPNVQGGSDYILCERGRP-LAQISLQIPGVHNVLNSLA 387 (538)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--d~~~~~i~~~~~~g~~f~~~~~~~~-~~~~~l~l~G~hnv~Nala 387 (538)
...+.+|+..... ..++. ++..+ ..+.. ...-.++++|.||++|+++
T Consensus 234 --------------------~~~~~~fs~~~~~~~~~~~~-------~~~~~---~~~~~i~~~~~l~l~G~hn~~N~lA 283 (448)
T COG0771 234 --------------------KARVIWFSFGEPLADGDYIY-------DGKLV---FKGEKLLPADELKLPGAHNLENALA 283 (448)
T ss_pred --------------------cceeEEEEccccccccceee-------cchhc---cccccccchhhcCCcchhhHHHHHH
Confidence 1344555543321 11111 11110 11111 1234689999999999999
Q ss_pred HHHHHHHhcCCccCCcccHHHHHHHhccCCCCCCceEEEeeeCCeEEEEEC-CCCHHHHHHHHHHHHhhCCCCeEEEEEc
Q 009293 388 VIATVLTLIGDKRQSHESIACLKLPLSKFMGVSRRFDLIGTIYGCHIYDDF-AHHPTEVRAVLQAARQRFPNKALIAVFQ 466 (538)
Q Consensus 388 Aia~a~~lgi~~~~~~~~~~~I~~~L~~f~~~~gR~E~v~~~~g~~ii~D~-Ahnp~s~~a~l~~l~~~~~~~r~i~V~g 466 (538)
|+|+|+.+|++ .+.|.++|.+|+|++||||++.+.+|+.||+|+ |.||++..++|..+ + +++++|+|
T Consensus 284 a~a~a~~~gv~-------~e~i~~~L~~F~gl~HR~e~v~~~~gv~f~NDSKATN~~At~~AL~~~----~-~~v~lI~G 351 (448)
T COG0771 284 ALALARALGVP-------PEAILEALSSFTGLPHRLEFVGEKDGVLFINDSKATNVDATLAALSGF----D-GPVILIAG 351 (448)
T ss_pred HHHHHHHcCCC-------HHHHHHHHHhCCCCCcceEEEEecCCEEEecCCCCCCHHHHHHHHHcC----C-CCEEEEEC
Confidence 99999999997 799999999999999999999999999999998 99999988887764 3 68999998
Q ss_pred cCCCCchHHHHHHHHHHhccCC-EEEEeccC
Q 009293 467 PHTYSRLVVLKDDFANALSEAD-QVVVSAVL 496 (538)
Q Consensus 467 ~~~~~r~~~~~~~~~~~~~~~D-~vi~~~~~ 496 (538)
..+ +-.+ ...+++.+++.. .+|+.+..
T Consensus 352 G~~--Kg~d-f~~L~~~~~~~~~~~~~~G~~ 379 (448)
T COG0771 352 GDD--KGAD-FSPLAEILAKVIKKLVLIGED 379 (448)
T ss_pred CCC--CCCC-hhHHHHHhhhcceEEEEeCCC
Confidence 533 3233 345666666533 46666643
No 10
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=3.4e-52 Score=445.29 Aligned_cols=363 Identities=18% Similarity=0.210 Sum_probs=265.5
Q ss_pred ceEEEEeechhhHHHHHHHHHhCCCcEEEecCCCChhHHHHHHCCCeEEeC-CCCCCcCCCCCCCCCCEEEEcCCCCCCC
Q 009293 76 GWIHFVGIGGSGLSALAKLALKQGFEVSGSDLVWSSYMEGLLEAGANLHIG-HSVSNIQGNDGSRFPNAVVASSAIPQDN 154 (538)
Q Consensus 76 ~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~~~~~~~~~~Ga~~~~~-~~~~~~~~~~~~~~~d~vvvsp~i~~~~ 154 (538)
++|+|+|+|.||+++ +++|+ +|++|.++|.+..+ ...+.+......++ +....+. .+|+||+|||||+++
T Consensus 7 ~~v~v~G~G~sG~a~-~~~L~-~g~~v~v~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~------~~d~vV~SPgI~~~~ 77 (454)
T PRK01368 7 QKIGVFGLGKTGISV-YEELQ-NKYDVIVYDDLKAN-RDIFEELYSKNAIAALSDSRWQ------NLDKIVLSPGIPLTH 77 (454)
T ss_pred CEEEEEeecHHHHHH-HHHHh-CCCEEEEECCCCCc-hHHHHhhhcCceeccCChhHhh------CCCEEEECCCCCCCC
Confidence 569999999999997 67777 59999999954322 12222221112233 2222222 589999999999999
Q ss_pred HHHHHHHHCCCCeeeHHHHHHHHhcCCcEEEEeCCCCchHHHHHHHHHHHHcCCCeEEEeCCCCCCCCCCccccCCCcEE
Q 009293 155 VEILHAKSVGVPIYKRDYWLAKLTEKYNLIAVSGSHGKSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNF 234 (538)
Q Consensus 155 ~~l~~a~~~gi~vi~~~~~l~~~~~~~~vI~VTGTnGKTTTt~ml~~iL~~~G~~v~~~~g~~~~~~~~~~~~~~~~~~~ 234 (538)
|.+++|++.|+||+++.+++.+..++.++|||||||||||||+||++||+.+|+++ ...|+..... .+. ....+++
T Consensus 78 p~~~~a~~~gi~v~~e~el~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~~g~~~-~~~GniG~p~--l~~-~~~~~~~ 153 (454)
T PRK01368 78 EIVKIAKNFNIPITSDIDLLFEKSKNLKFIAITGTNGKSTTTALISHILNSNGLDY-PVAGNIGVPA--LQA-KASKDGY 153 (454)
T ss_pred HHHHHHHHCCCceecHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHhcCCCe-EEEccCCHHH--hcc-cCCCCEE
Confidence 99999999999999999998877666789999999999999999999999999874 3444421111 111 1235789
Q ss_pred EEeecCcceeec-cccCcEEEEcCCCccccccCCCHHHHHHHHHHHhhcccCCcEEEEcCCCHHHHHHHHHhhhhcCccc
Q 009293 235 VLEADEYDGCFL-GLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQDTGLKY 313 (538)
Q Consensus 235 VlE~~~~d~~~~-~~~p~vaVITNI~~DHld~~gs~e~~~~~k~~~~~~~~~~~~~Vln~dd~~~~~~~~~~~~~~~~~~ 313 (538)
|+|++++|.... .++|+++|||||++||+|||+|+|+|+++|.+++..+++++.+|+|.||+....+.......
T Consensus 154 VlE~ss~ql~~~~~~~P~iavitNI~~DHLd~~~s~e~y~~aK~~i~~~~~~~~~~Vln~Dd~~~~~~~~~~~~~----- 228 (454)
T PRK01368 154 VLELSSFQLDLVKTFTAKIAVLLNITPDHLDRHQDMDGYIAAKSKIFDRMDKDSYAVINIDNDYCREIFIKLQQE----- 228 (454)
T ss_pred EEEcCchhhccccccCCCEEEEecCChhHhhccCCHHHHHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHhhcc-----
Confidence 999999997654 58999999999999999999999999999999999888889999999999887765432210
Q ss_pred cCCcccccCcccccCCCCceEEEeeccCCCcceEeeeeecCCCCeEEEEEECCeeeeEEEeCCCchhHHHHHHHHHHHHH
Q 009293 314 SGGVVSNQSSDLWGQGHDYKIITYGFSSFNDWYAESVCPNVQGGSDYILCERGRPLAQISLQIPGVHNVLNSLAVIATVL 393 (538)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~d~~~~~i~~~~~~g~~f~~~~~~~~~~~~~l~l~G~hnv~NalaAia~a~ 393 (538)
...++++|+.....+.. +... .++..+.+.........+.++++|.||++|+++|++++.
T Consensus 229 ----------------~~~~v~~f~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~l~G~hn~~Na~aAia~~~ 288 (454)
T PRK01368 229 ----------------QRIKLIPFSVTKILENG---ISVV-DDKISDNFFDDISFKLPFNKNLQGKHNCENIAASYAVAK 288 (454)
T ss_pred ----------------cCceEEEEeCCcccCCC---cEEE-CCEEEEEecCCcceEEEecCCCCchhhHHHHHHHHHHHH
Confidence 01356777754211111 1000 111111111110112356678999999999999999999
Q ss_pred HhcCCccCCcccHHHHHHHhccCCCCCCceEEEeeeCCeEEEEE-CCCCHHHHHHHHHHHHhhCCCCeEEEEEccCCCCc
Q 009293 394 TLIGDKRQSHESIACLKLPLSKFMGVSRRFDLIGTIYGCHIYDD-FAHHPTEVRAVLQAARQRFPNKALIAVFQPHTYSR 472 (538)
Q Consensus 394 ~lgi~~~~~~~~~~~I~~~L~~f~~~~gR~E~v~~~~g~~ii~D-~Ahnp~s~~a~l~~l~~~~~~~r~i~V~g~~~~~r 472 (538)
.+|++ .+.|+++|++|++||||||++.+.+++.+|+| +||||+|+.++++.++ ++++|+|..+...
T Consensus 289 ~lgi~-------~~~i~~~L~~F~~~~~Rle~v~~~~gv~~i~DS~atN~~a~~~al~~~~------~i~lI~Gg~dk~~ 355 (454)
T PRK01368 289 IIGVE-------PKKILESISSFQSLPHRMQYIGSINNISFYNDSKATNAISAVQSIKALD------NIYWLAGGIPKEG 355 (454)
T ss_pred HcCCC-------HHHHHHHHHhCCCCCcceEEEEEECCeEEEECCCCCCHHHHHHHHHhcC------CeEEEecccCCCC
Confidence 99997 78999999999999999999987788999999 7999999999888762 4788998654222
Q ss_pred hHHHHHHHHHHhccCCEEEE
Q 009293 473 LVVLKDDFANALSEADQVVV 492 (538)
Q Consensus 473 ~~~~~~~~~~~~~~~D~vi~ 492 (538)
+ ...+.+.+++.-.+++
T Consensus 356 ~---~~~L~~~~~~v~~v~~ 372 (454)
T PRK01368 356 G---IEEIKPYFSKIKKAYF 372 (454)
T ss_pred C---HHHHHHHHHhhcEEEE
Confidence 2 2345554433333433
No 11
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=1.9e-52 Score=449.55 Aligned_cols=361 Identities=23% Similarity=0.306 Sum_probs=277.2
Q ss_pred ceEEEEeechhhHHHHHHHHHhCCCcEEEecCCCCh----hHHHHHHCCCeEEeCCCC-CCcCCCCCCCCCCEEEEcCCC
Q 009293 76 GWIHFVGIGGSGLSALAKLALKQGFEVSGSDLVWSS----YMEGLLEAGANLHIGHSV-SNIQGNDGSRFPNAVVASSAI 150 (538)
Q Consensus 76 ~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~~----~~~~~~~~Ga~~~~~~~~-~~~~~~~~~~~~d~vvvsp~i 150 (538)
++|+|+|+|++|+ ++|++|+..|++|+++|.+..+ ....+.+.|+.+..++.. +.+. .+|+||+||||
T Consensus 15 ~~i~v~G~G~sG~-a~a~~L~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~------~~dlVV~Spgi 87 (458)
T PRK01710 15 KKVAVVGIGVSNI-PLIKFLVKLGAKVTAFDKKSEEELGEVSNELKELGVKLVLGENYLDKLD------GFDVIFKTPSM 87 (458)
T ss_pred CeEEEEcccHHHH-HHHHHHHHCCCEEEEECCCCCccchHHHHHHHhCCCEEEeCCCChHHhc------cCCEEEECCCC
Confidence 5699999999999 5689999999999999976431 234577789999887543 3232 58999999999
Q ss_pred CCCCHHHHHHHHCCCCeeeHHHHHHHHhcCCcEEEEeCCCCchHHHHHHHHHHHHcCCCeEEEeCCCCCCCCCCccccCC
Q 009293 151 PQDNVEILHAKSVGVPIYKRDYWLAKLTEKYNLIAVSGSHGKSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGG 230 (538)
Q Consensus 151 ~~~~~~l~~a~~~gi~vi~~~~~l~~~~~~~~vI~VTGTnGKTTTt~ml~~iL~~~G~~v~~~~g~~~~~~~~~~~~~~~ 230 (538)
++++|++++|++.|+|++++.+++.+.. +.++|+||||||||||++|++++|+.+|+++ ...|+....+........+
T Consensus 88 ~~~~p~~~~a~~~~i~i~s~~e~~~~~~-~~~vIaITGTnGKTTT~~ll~~iL~~~g~~~-~~~gniG~p~~~~~~~~~~ 165 (458)
T PRK01710 88 RIDSPELVKAKEEGAYITSEMEEFIKYC-PAKVFGVTGSDGKTTTTTLIYEMLKEEGYKT-WVGGNIGTPLFSNIEEIKE 165 (458)
T ss_pred CCCchHHHHHHHcCCcEEechHHhhhhc-CCCEEEEECCCCHHHHHHHHHHHHHhCCCCE-EECCccChhHHHHHhhCCC
Confidence 9999999999999999999999877653 4689999999999999999999999999875 3334321100000001234
Q ss_pred CcEEEEeecCcceeeccccCcEEEEcCCCccccccCCCHHHHHHHHHHHhhcccCCcEEEEcCCCHHHHHHHHHhhhhcC
Q 009293 231 GKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQDTG 310 (538)
Q Consensus 231 ~~~~VlE~~~~d~~~~~~~p~vaVITNI~~DHld~~gs~e~~~~~k~~~~~~~~~~~~~Vln~dd~~~~~~~~~~~~~~~ 310 (538)
.+++|+|+++.+...+.++|+++|||||++||+|+|||+|+|+++|.+++..+++++.+|+|.||+....+....
T Consensus 166 ~~~~VlE~~~~~~~~~~~~PdiaViTNI~~dHld~~~s~e~~~~aK~~i~~~~~~~~~~v~n~Dd~~~~~~~~~~----- 240 (458)
T PRK01710 166 EDKVVLELSSFQLMTMDVSPEVAVVTNLSPNHLDVHKDMEEYIDAKKNIFKYQSENDLLVLNKDNEITNGMEKEA----- 240 (458)
T ss_pred CCEEEEEcCccccccCCCCCCEEEEecCChhhccccCCHHHHHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHhhc-----
Confidence 689999999988777778999999999999999999999999999999999888889999999999876553221
Q ss_pred ccccCCcccccCcccccCCCCceEEEeeccCC---CcceEeeeeecCCCCeEEEEEECCeee-eEEEeCCCchhHHHHHH
Q 009293 311 LKYSGGVVSNQSSDLWGQGHDYKIITYGFSSF---NDWYAESVCPNVQGGSDYILCERGRPL-AQISLQIPGVHNVLNSL 386 (538)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~---~d~~~~~i~~~~~~g~~f~~~~~~~~~-~~~~l~l~G~hnv~Nal 386 (538)
..++++|+...+ .++.. .+ .+.+ .+... ..++++++|.||++|++
T Consensus 241 --------------------~~~~~~fg~~~~~~~~~~~~--------~~-~~~~--~~~~~~~~~~l~l~G~hnv~Nal 289 (458)
T PRK01710 241 --------------------KGDVVKFSRKEKVYEGAYLK--------NG-KLYI--RGKEVCKKDDIKLKGMHNVENLL 289 (458)
T ss_pred --------------------CCcEEEEeCCCCCCCceEEe--------CC-EEEE--cCceEEEhhhcCCccHhHHHHHH
Confidence 134677875421 11110 01 1111 11111 24678999999999999
Q ss_pred HHHHHHHHhcCCccCCcccHHHHHHHhccCCCCCCceEEEeeeCCeEEEEE-CCCCHHHHHHHHHHHHhhCCCCeEEEEE
Q 009293 387 AVIATVLTLIGDKRQSHESIACLKLPLSKFMGVSRRFDLIGTIYGCHIYDD-FAHHPTEVRAVLQAARQRFPNKALIAVF 465 (538)
Q Consensus 387 aAia~a~~lgi~~~~~~~~~~~I~~~L~~f~~~~gR~E~v~~~~g~~ii~D-~Ahnp~s~~a~l~~l~~~~~~~r~i~V~ 465 (538)
+|++++..+ ++ .+.|.++|++|++++||||.+...+|+.+|+| |||||+++.++++++. . ++++|+
T Consensus 290 aA~a~a~~~-i~-------~~~i~~~L~~f~~~~~R~e~~~~~~g~~~i~Dsy~~np~s~~~al~~~~----~-~~i~Il 356 (458)
T PRK01710 290 AAFCAVNDD-VS-------IESMKKVATTFSGVEHRCEFVREINGVKYYNDSIASSPTRTLAGLKAFE----K-PVILIA 356 (458)
T ss_pred HHHHHHHhC-CC-------HHHHHHHHHhCCCCCcceEEEEEECCEEEecccccCCHHHHHHHHHhCC----C-CEEEEe
Confidence 999999886 86 89999999999999999999876689999999 8999999999998763 2 578888
Q ss_pred ccCCCCchHHHHHHHHH-HhccCCEEEEeccCC
Q 009293 466 QPHTYSRLVVLKDDFAN-ALSEADQVVVSAVLV 497 (538)
Q Consensus 466 g~~~~~r~~~~~~~~~~-~~~~~D~vi~~~~~~ 497 (538)
|.. .+.. .+.++.+ +....|.||+++...
T Consensus 357 Gg~--~~~~-~~~~l~~~~~~~~~~vi~~G~~~ 386 (458)
T PRK01710 357 GGY--DKKI-PFEPLAEEGYEKIKTLILMGATK 386 (458)
T ss_pred CCc--CCCC-CHHHHHHHHHhhccEEEEECCCH
Confidence 853 2222 3445555 334689999998753
No 12
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=8.1e-52 Score=445.58 Aligned_cols=363 Identities=21% Similarity=0.254 Sum_probs=270.0
Q ss_pred ceEEEEeechhhHHHHHHHHHhCCCcEEEecCCCChhHHHHHHCCCeEEeCCCCCCcCCCCCCCCCCEEEEcCCCCCCCH
Q 009293 76 GWIHFVGIGGSGLSALAKLALKQGFEVSGSDLVWSSYMEGLLEAGANLHIGHSVSNIQGNDGSRFPNAVVASSAIPQDNV 155 (538)
Q Consensus 76 ~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~d~vvvsp~i~~~~~ 155 (538)
++|+|+|+|+|||++ |++|+.+|++|.|+|...... .++.+.|+.+.. +....+. .+|+||+||||++++|
T Consensus 10 ~~i~viG~G~~G~~~-a~~l~~~G~~v~~~D~~~~~~-~~l~~~g~~~~~-~~~~~~~------~~d~vv~sp~i~~~~~ 80 (460)
T PRK01390 10 KTVAVFGLGGSGLAT-ARALVAGGAEVIAWDDNPASR-AKAAAAGITTAD-LRTADWS------GFAALVLSPGVPLTHP 80 (460)
T ss_pred CEEEEEeecHhHHHH-HHHHHHCCCEEEEECCChhhH-HHHHhcCccccC-CChhHHc------CCCEEEECCCCCccCC
Confidence 469999999999996 999999999999999654333 346677887532 2222222 5899999999999877
Q ss_pred ----HHHHHHHCCCCeeeHHHHHHHHhc----CCcEEEEeCCCCchHHHHHHHHHHHHcCCCeEEEeCCCCCCCCCCccc
Q 009293 156 ----EILHAKSVGVPIYKRDYWLAKLTE----KYNLIAVSGSHGKSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIF 227 (538)
Q Consensus 156 ----~l~~a~~~gi~vi~~~~~l~~~~~----~~~vI~VTGTnGKTTTt~ml~~iL~~~G~~v~~~~g~~~~~~~~~~~~ 227 (538)
.+..+++.|+|++++.+++.+..+ +.++|+||||||||||++||+++|+.+|+++ ...|+....+.. ...
T Consensus 81 ~~~~~v~~a~~~gi~i~~~~~~~~~~~~~~~~~~~vI~VTGT~GKTTTt~ll~~iL~~~g~~~-~~~gnig~~~~~-~~~ 158 (460)
T PRK01390 81 KPHWVVDLARAAGVEVIGDIELFCRERRAHAPDAPFIAITGTNGKSTTTALIAHILREAGRDV-QMGGNIGTAVLT-LEP 158 (460)
T ss_pred cccHHHHHHHHcCCcEEeHHHHHHHHhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhcCCCe-EEcCccchhhhh-ccc
Confidence 999999999999999998877532 5689999999999999999999999999874 344432111110 001
Q ss_pred cCCCcEEEEeecCcceee-ccccCcEEEEcCCCccccccCCCHHHHHHHHHHHhhcccCCcEEEEcCCCHHHHHHHHHhh
Q 009293 228 YGGGKNFVLEADEYDGCF-LGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIK 306 (538)
Q Consensus 228 ~~~~~~~VlE~~~~d~~~-~~~~p~vaVITNI~~DHld~~gs~e~~~~~k~~~~~~~~~~~~~Vln~dd~~~~~~~~~~~ 306 (538)
....+++|+|+++++... ..++|+++|||||++||++||||+|+|+++|.+++...++ +.+|+|.||+....+.+...
T Consensus 159 ~~~~~~~V~E~~~~~ld~t~~i~P~iaVITNI~~DHld~lgsle~ia~~K~~ii~~~~~-~~~V~n~dd~~~~~~~~~~~ 237 (460)
T PRK01390 159 PPAGRVYVLELSSYQIDLAPSLDPDVGVLLNLTPDHLDRHGTMEGYAAAKERLFAGQGP-DTAVIGVDDAYCRAIADRLE 237 (460)
T ss_pred CCCCCEEEEEcCccccccccccCCCEEEEecCChhHhcccCCHHHHHHHHHHHHhcCCC-CEEEEeCCCHHHHHHHHhcc
Confidence 124689999999877532 2578999999999999999999999999999999987766 89999999998776644322
Q ss_pred hhcCccccCCcccccCcccccCCCCceEEEeeccCC--CcceEeeeeecCCCCeEEEEEECCee--eeEE--EeCCCchh
Q 009293 307 QDTGLKYSGGVVSNQSSDLWGQGHDYKIITYGFSSF--NDWYAESVCPNVQGGSDYILCERGRP--LAQI--SLQIPGVH 380 (538)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~d~~~~~i~~~~~~g~~f~~~~~~~~--~~~~--~l~l~G~h 380 (538)
.. +.++++|+.... .++... ++..|... .+.. ...+ .++++|.|
T Consensus 238 ~~----------------------~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~-~~~~~~~~~~~~~~~l~G~h 287 (460)
T PRK01390 238 AA----------------------GRRVVRISAGKPLADGVYAD-------GGKLVDAR-GGRQVEIADLRGIPSLPGAH 287 (460)
T ss_pred cc----------------------CceEEEEeCCCCCcCceEEe-------CCEEEEec-CCCcceeeeHHhhccCCchh
Confidence 10 135666765321 122111 12223321 1100 0111 14799999
Q ss_pred HHHHHHHHHHHHHHhcCCccCCcccHHHHHHHhccCCCCCCceEEEeeeCCeEEEEE-CCCCHHHHHHHHHHHHhhCCCC
Q 009293 381 NVLNSLAVIATVLTLIGDKRQSHESIACLKLPLSKFMGVSRRFDLIGTIYGCHIYDD-FAHHPTEVRAVLQAARQRFPNK 459 (538)
Q Consensus 381 nv~NalaAia~a~~lgi~~~~~~~~~~~I~~~L~~f~~~~gR~E~v~~~~g~~ii~D-~Ahnp~s~~a~l~~l~~~~~~~ 459 (538)
|++|+++|++++..+|++ .+.|+++|++|+++|||||++...+++.+|+| |||||+|++++|+.+ +
T Consensus 288 n~~Na~aAiaa~~~lgi~-------~~~i~~gL~~~~~~~gR~e~i~~~~g~~vIdDs~ahNp~s~~~aL~~~------~ 354 (460)
T PRK01390 288 NAQNAAAAYAAARALGLS-------PEEIAAGLASFPGLAHRMEQVGRRGGVLFVNDSKATNADAAAKALSSF------D 354 (460)
T ss_pred HHHHHHHHHHHHHHcCCC-------HHHHHHHHHhCCCCCCceEEEeeeCCcEEEEcCCCCCHHHHHHHHHhC------C
Confidence 999999999999999997 79999999999999999999976678899999 899999999887753 3
Q ss_pred eEEEEEccCCCCchHHHHHHHHHHhccCCEEEEeccC
Q 009293 460 ALIAVFQPHTYSRLVVLKDDFANALSEADQVVVSAVL 496 (538)
Q Consensus 460 r~i~V~g~~~~~r~~~~~~~~~~~~~~~D~vi~~~~~ 496 (538)
++++|+|..+... ....+.+.++.++.++++...
T Consensus 355 ~i~~I~G~~d~~~---~~~~L~~~~~~v~~v~~~g~~ 388 (460)
T PRK01390 355 RIYWIAGGKPKEG---GIESLAPFFPRIAKAYLIGEA 388 (460)
T ss_pred CeEEEecCccCCC---CHHHHHHHHHhhCEEEEECCC
Confidence 6888999644322 334566655678888887543
No 13
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=6e-52 Score=444.02 Aligned_cols=360 Identities=19% Similarity=0.256 Sum_probs=270.6
Q ss_pred ceEEEEeechhhHHHHHHHHHhCCCcEEEecCCCChh-HHHHHHCCCeEEeCCCCC-CcCCCCCCCCCCEEEEcCCCCCC
Q 009293 76 GWIHFVGIGGSGLSALAKLALKQGFEVSGSDLVWSSY-MEGLLEAGANLHIGHSVS-NIQGNDGSRFPNAVVASSAIPQD 153 (538)
Q Consensus 76 ~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~~~-~~~~~~~Ga~~~~~~~~~-~~~~~~~~~~~d~vvvsp~i~~~ 153 (538)
++|+|+|+|+|||+++ ++|+.+|++|.|+|....+. .+.+ +.|+.+..++... .+. .+|+||+||||+++
T Consensus 7 ~~i~v~G~G~sG~s~~-~~l~~~G~~v~~~D~~~~~~~~~~l-~~g~~~~~~~~~~~~~~------~~d~vv~spgi~~~ 78 (438)
T PRK03806 7 KKVVIIGLGLTGLSCV-DFFLARGVTPRVIDTRITPPGLDKL-PENVERHTGSLNDEWLL------AADLIVASPGIALA 78 (438)
T ss_pred CEEEEEeeCHHHHHHH-HHHHHCCCeEEEEcCCCCchhHHHH-hcCCEEEeCCCCHHHhc------CCCEEEECCCCCCC
Confidence 5699999999999997 57888999999999765433 2344 4598887775432 232 57999999999999
Q ss_pred CHHHHHHHHCCCCeeeHHHHHHHHhcCCcEEEEeCCCCchHHHHHHHHHHHHcCCCeEEEeCCCCCCCCCCccccCCCcE
Q 009293 154 NVEILHAKSVGVPIYKRDYWLAKLTEKYNLIAVSGSHGKSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKN 233 (538)
Q Consensus 154 ~~~l~~a~~~gi~vi~~~~~l~~~~~~~~vI~VTGTnGKTTTt~ml~~iL~~~G~~v~~~~g~~~~~~~~~~~~~~~~~~ 233 (538)
+|.+.+|++.|++++++.+++.... +.++|+||||||||||++||+++|+..|+++ ...|+... +.........++
T Consensus 79 ~~~~~~a~~~g~~v~~~~el~~~~~-~~~~I~VTGTnGKTTTt~ll~~iL~~~g~~~-~~~gnig~--p~~~~~~~~~~~ 154 (438)
T PRK03806 79 HPSLSAAADAGIEIVGDIELFCREA-QAPIVAITGSNGKSTVTTLVGEMAKAAGWKV-GVGGNIGL--PALSLLDQECEL 154 (438)
T ss_pred CHHHHHHHHCCCeEEEHHHHHhhhc-CCCEEEEeCCCCHHHHHHHHHHHHHHcCCCE-EEeCCcch--hHHHhhccCCCE
Confidence 9999999999999999999887765 5689999999999999999999999999874 34444211 100111234689
Q ss_pred EEEeecCccee-eccccCcEEEEcCCCccccccC-CCHHHHHHHHHHHhhcccCCcEEEEcCCCHHHHHHHHHhhhhcCc
Q 009293 234 FVLEADEYDGC-FLGLSPSVAVVTNLDWEHVDIF-EDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQDTGL 311 (538)
Q Consensus 234 ~VlE~~~~d~~-~~~~~p~vaVITNI~~DHld~~-gs~e~~~~~k~~~~~~~~~~~~~Vln~dd~~~~~~~~~~~~~~~~ 311 (538)
+|+|.++++.. ...++|+++|||||++||+||| +|+|+|+++|.+++.. .+.+|+|.||+....+...
T Consensus 155 ~V~E~ss~~l~~~~~~~p~iaViTNI~~DHld~~g~s~e~~~~~K~~i~~~---~~~~v~n~dd~~~~~~~~~------- 224 (438)
T PRK03806 155 YVLELSSFQLETTSSLKAAAATILNVTEDHMDRYPFGLQQYRAAKLRIYEN---AKVCVVNADDALTMPIRGA------- 224 (438)
T ss_pred EEEEccchhhccCcccCCCEEEEecCcHHHhccccCCHHHHHHHHHHHHhC---CCeEEEeCCCHHHHHHhcC-------
Confidence 99999988632 3457899999999999999999 6999999999999863 4789999999877653211
Q ss_pred cccCCcccccCcccccCCCCceEEEeeccCCCcceEeeeeecCCCCeEEEEEECCeeeeEEEeCCCchhHHHHHHHHHHH
Q 009293 312 KYSGGVVSNQSSDLWGQGHDYKIITYGFSSFNDWYAESVCPNVQGGSDYILCERGRPLAQISLQIPGVHNVLNSLAVIAT 391 (538)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~d~~~~~i~~~~~~g~~f~~~~~~~~~~~~~l~l~G~hnv~NalaAia~ 391 (538)
..++++|+.+ ..++.+.. ..+..+.+...+.....++++++|.||++|+++|+++
T Consensus 225 -------------------~~~~~~~~~~-~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~l~G~hn~~Na~aAia~ 279 (438)
T PRK03806 225 -------------------DKRCVSFGVN-MGDYHLNR-----QQGETWLRVKGEKVLNTKEMKLSGQHNYTNALAALAL 279 (438)
T ss_pred -------------------CceEEEEecC-CCceEEEe-----cCCeEEEEecCceeeehhhcCCcccccHHHHHHHHHH
Confidence 1345677653 23444321 1122333222111112457899999999999999999
Q ss_pred HHHhcCCccCCcccHHHHHHHhccCCCCCCceEEEeeeCCeEEEEE-CCCCHHHHHHHHHHHHhhCCCCeEEEEEccCCC
Q 009293 392 VLTLIGDKRQSHESIACLKLPLSKFMGVSRRFDLIGTIYGCHIYDD-FAHHPTEVRAVLQAARQRFPNKALIAVFQPHTY 470 (538)
Q Consensus 392 a~~lgi~~~~~~~~~~~I~~~L~~f~~~~gR~E~v~~~~g~~ii~D-~Ahnp~s~~a~l~~l~~~~~~~r~i~V~g~~~~ 470 (538)
+..+|++ .++++++|++|++++||||++...+++.+|+| |||||+|++++++.++. .+|+++|+|.++
T Consensus 280 a~~lgi~-------~~~i~~~L~~f~~~~gR~E~v~~~~~~~~i~Ds~a~n~~a~~~al~~l~~---~~~~i~IlG~~~- 348 (438)
T PRK03806 280 ADAVGIP-------RASSLKALTTFTGLPHRFQLVLEHNGVRWINDSKATNVGSTEAALNGLHV---DGTLHLLLGGDG- 348 (438)
T ss_pred HHHcCCC-------HHHHHHHHHhCCCCCCeEEEEEeeCCEEEEEcCCCCCHHHHHHHHHhCcc---CCcEEEEECCcC-
Confidence 9999997 79999999999999999999976678899998 79999999999999862 357899999753
Q ss_pred CchHHHHHHHHHHh-ccCCEEEEecc
Q 009293 471 SRLVVLKDDFANAL-SEADQVVVSAV 495 (538)
Q Consensus 471 ~r~~~~~~~~~~~~-~~~D~vi~~~~ 495 (538)
++.++ ..+.+.+ .....+++++.
T Consensus 349 -k~~d~-~~l~~~l~~~~~~v~~~g~ 372 (438)
T PRK03806 349 -KSADF-SPLARYLNGDNIRLYCFGR 372 (438)
T ss_pred -CCCCH-HHHHHHHHhhCcEEEEECC
Confidence 23332 2344422 33446777765
No 14
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=6.2e-52 Score=446.68 Aligned_cols=362 Identities=20% Similarity=0.192 Sum_probs=268.0
Q ss_pred ceEEEEeechhhHHHHHHHHHhCCCcEEEecCCCChhHHHHHHCCCeEEeCC-CCCCcCCCCCCCCCCEEEEcCCCCCCC
Q 009293 76 GWIHFVGIGGSGLSALAKLALKQGFEVSGSDLVWSSYMEGLLEAGANLHIGH-SVSNIQGNDGSRFPNAVVASSAIPQDN 154 (538)
Q Consensus 76 ~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~~~~~~~~~~Ga~~~~~~-~~~~~~~~~~~~~~d~vvvsp~i~~~~ 154 (538)
++|+|+|+|+||| ++|++|+.+|++|.++|.+.....+.+.+.|+.+..+. ....+. .+|+||+|||||+++
T Consensus 16 ~~v~v~G~G~sG~-a~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~------~~d~vV~Spgi~~~~ 88 (473)
T PRK00141 16 GRVLVAGAGVSGR-GIAAMLSELGCDVVVADDNETARHKLIEVTGVADISTAEASDQLD------SFSLVVTSPGWRPDS 88 (473)
T ss_pred CeEEEEccCHHHH-HHHHHHHHCCCEEEEECCChHHHHHHHHhcCcEEEeCCCchhHhc------CCCEEEeCCCCCCCC
Confidence 5699999999999 56899999999999999653332222355699887773 333343 589999999999999
Q ss_pred HHHHHHHHCCCCeeeHHHHHHHHh------cCCcEEEEeCCCCchHHHHHHHHHHHHcCCCeEEEeCCCCCCCCCCcccc
Q 009293 155 VEILHAKSVGVPIYKRDYWLAKLT------EKYNLIAVSGSHGKSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFY 228 (538)
Q Consensus 155 ~~l~~a~~~gi~vi~~~~~l~~~~------~~~~vI~VTGTnGKTTTt~ml~~iL~~~G~~v~~~~g~~~~~~~~~~~~~ 228 (538)
|++++|++.|++++++.++...+. ...++|+||||||||||++||+++|+.+|+++ .+.|+....+.......
T Consensus 89 p~~~~a~~~gi~v~~~~el~~~~~~~~~~~~~~~vIaVTGTnGKTTTt~ml~~iL~~~g~~~-~~~Gnig~p~~~~l~~~ 167 (473)
T PRK00141 89 PLLVDAQSQGLEVIGDVELAWRLDQAGVFGEPRTWLAVTGTNGKTTTTAMLAAMMQEGGFAA-QAVGNIGVPVSAALVAQ 167 (473)
T ss_pred HHHHHHHHCCCceeeHHHHHHHhhhhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhcCCcE-EEeccCChhHHHHHhcC
Confidence 999999999999999999765532 13469999999999999999999999999875 45565321111000112
Q ss_pred CCCcEEEEeecCcceee-ccccCcEEEEcCCCccccccCCCHHHHHHHHHHHhhcccCCcEEEEcCCCHHHHHHHHHhhh
Q 009293 229 GGGKNFVLEADEYDGCF-LGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQ 307 (538)
Q Consensus 229 ~~~~~~VlE~~~~d~~~-~~~~p~vaVITNI~~DHld~~gs~e~~~~~k~~~~~~~~~~~~~Vln~dd~~~~~~~~~~~~ 307 (538)
...+++|+|+++++... ..++|+++|||||++||+|+|||+|+|+++|.++++ ++.+|+|.||+....+.....
T Consensus 168 ~~~~~~V~E~ss~~l~~~~~~~pdiaViTNi~~dHLd~~~s~e~y~~aK~~l~~----~~~~vln~Dd~~~~~~~~~~~- 242 (473)
T PRK00141 168 PRIDVLVAELSSFQLHWSPTLTPDVGVVLNLAEDHIDWHGSMRDYAADKAKVLR----GPVAVIGADDEYVVQLTSAAD- 242 (473)
T ss_pred CCCCEEEEecCCcccccCcccCCCEEEEcCCChhhccccCCHHHHHHHHHHHhh----CCEEEEECCCHHHHHHHhhcC-
Confidence 34589999999876532 257999999999999999999999999999999985 368999999998766543211
Q ss_pred hcCccccCCcccccCcccccCCCCceEEEeeccCCC--c--ceEeeeeecCCCCeEEEEEECCeeeeEEEeCCCchhHHH
Q 009293 308 DTGLKYSGGVVSNQSSDLWGQGHDYKIITYGFSSFN--D--WYAESVCPNVQGGSDYILCERGRPLAQISLQIPGVHNVL 383 (538)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--d--~~~~~i~~~~~~g~~f~~~~~~~~~~~~~l~l~G~hnv~ 383 (538)
..++++|+..... + +....+... ..+..+.+. ..+.++++|.||++
T Consensus 243 -----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~------~~~~~~l~G~hn~~ 292 (473)
T PRK00141 243 -----------------------LSGLIGFTMGEPAAGQVGVRDGELVDN-AFGQNVVLA------SAEGISPAGPAGVL 292 (473)
T ss_pred -----------------------CCcEEEEeCCCCCcCcceEECCEEEEe-cCCCceEEe------ehhhcCCCcHhHHH
Confidence 1246778764321 2 211111111 011122211 12467899999999
Q ss_pred HHHHHHHHHHHhcCCccCCcccHHHHHHHhccCCCCCCceEEEeeeCCeEEEEEC-CCCHHHHHHHHHHHHhhCCCCeEE
Q 009293 384 NSLAVIATVLTLIGDKRQSHESIACLKLPLSKFMGVSRRFDLIGTIYGCHIYDDF-AHHPTEVRAVLQAARQRFPNKALI 462 (538)
Q Consensus 384 NalaAia~a~~lgi~~~~~~~~~~~I~~~L~~f~~~~gR~E~v~~~~g~~ii~D~-Ahnp~s~~a~l~~l~~~~~~~r~i 462 (538)
|+++|++++..+|++ .+.++++|++|++++||||++...++..+|||| ||||+++++++++++ +++
T Consensus 293 Na~aA~a~~~~lgi~-------~~~i~~~l~~~~~~~~R~e~~~~~~~~~iiDdsyahNp~s~~~~l~~l~------~~~ 359 (473)
T PRK00141 293 DALAAAAVARSQGVA-------PEAIARALSSFEVAGHRGQVVAEHGGVTWIDNSKATNPHAADAALAGHE------SVV 359 (473)
T ss_pred HHHHHHHHHHHcCCC-------HHHHHHHHhhCCCCCCceEEEEEeCCEEEEEcCCCCCHHHHHHHHHhcC------CEE
Confidence 999999999999997 789999999999888899999755678888884 999999999998863 468
Q ss_pred EEEccCCCCchHHHHHHHHHHhccCCEEEEecc
Q 009293 463 AVFQPHTYSRLVVLKDDFANALSEADQVVVSAV 495 (538)
Q Consensus 463 ~V~g~~~~~r~~~~~~~~~~~~~~~D~vi~~~~ 495 (538)
+|+|.. .+++++...+..+.+..+.+++++.
T Consensus 360 ~i~gG~--~kdkd~~~~~~~l~~~~~~~~~~~~ 390 (473)
T PRK00141 360 WVAGGQ--LKGADIDDLIRTHAPRIKAAVVLGV 390 (473)
T ss_pred EEecCc--cCCCChHHHHHHHHhhccEEEEECC
Confidence 888432 3556655555555566777777653
No 15
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=8.6e-52 Score=443.58 Aligned_cols=363 Identities=20% Similarity=0.255 Sum_probs=273.6
Q ss_pred ceEEEEeechhhHHHHHHHHHhCCCcEEEecCCCCh-hHHHHHH--CCCeEEeCCCCCCcCCCCCCCCCCEEEEcCCCCC
Q 009293 76 GWIHFVGIGGSGLSALAKLALKQGFEVSGSDLVWSS-YMEGLLE--AGANLHIGHSVSNIQGNDGSRFPNAVVASSAIPQ 152 (538)
Q Consensus 76 ~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~~-~~~~~~~--~Ga~~~~~~~~~~~~~~~~~~~~d~vvvsp~i~~ 152 (538)
++|+|+|+|++||++ |++|+.+|++|.++|..... ..+++.+ .|+.+..++...... ..+|+||+|||||+
T Consensus 6 ~~~~v~G~g~~G~~~-a~~l~~~g~~v~~~d~~~~~~~~~~l~~~~~gi~~~~g~~~~~~~-----~~~d~vv~spgi~~ 79 (445)
T PRK04308 6 KKILVAGLGGTGISM-IAYLRKNGAEVAAYDAELKPERVAQIGKMFDGLVFYTGRLKDALD-----NGFDILALSPGISE 79 (445)
T ss_pred CEEEEECCCHHHHHH-HHHHHHCCCEEEEEeCCCCchhHHHHhhccCCcEEEeCCCCHHHH-----hCCCEEEECCCCCC
Confidence 569999999999997 99999999999999976442 2344544 488887775433221 25899999999999
Q ss_pred CCHHHHHHHHCCCCeeeHHHHHHHHhc--CCcEEEEeCCCCchHHHHHHHHHHHHcCCCeEEEeCCCCCCCCCCcc--cc
Q 009293 153 DNVEILHAKSVGVPIYKRDYWLAKLTE--KYNLIAVSGSHGKSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSI--FY 228 (538)
Q Consensus 153 ~~~~l~~a~~~gi~vi~~~~~l~~~~~--~~~vI~VTGTnGKTTTt~ml~~iL~~~G~~v~~~~g~~~~~~~~~~~--~~ 228 (538)
++|.+++|++.|+|++++.+++.+..+ +.++|+||||||||||++||+++|+.+|.++ ...|+....+..... ..
T Consensus 80 ~~p~~~~a~~~~i~v~~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~li~~iL~~~g~~~-~~~GniG~~~~~~~~~~~~ 158 (445)
T PRK04308 80 RQPDIEAFKQNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDT-VIAGNIGTPVLEAELQREG 158 (445)
T ss_pred CCHHHHHHHHcCCcEEEhHHHHHHhhhcCCCCEEEEECCCcHHHHHHHHHHHHHHcCCCe-EEeCCccHHHHHHHHhhcC
Confidence 999999999999999999999887653 3589999999999999999999999999874 445542111000000 01
Q ss_pred CCCcEEEEeecCcce-eeccccCcEEEEcCCCccccccCCCHHHHHHHHHHHhhcccCCcEEEEcCCCHHHHHHHHHhhh
Q 009293 229 GGGKNFVLEADEYDG-CFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQ 307 (538)
Q Consensus 229 ~~~~~~VlE~~~~d~-~~~~~~p~vaVITNI~~DHld~~gs~e~~~~~k~~~~~~~~~~~~~Vln~dd~~~~~~~~~~~~ 307 (538)
...+++|+|.++.+. ....++|+++|||||++||+|||+|+|+|+++|.+++. +++.+|+|.||+....+.+.
T Consensus 159 ~~~d~~VlE~~~~~l~~~~~~~p~iaviTNI~~DHld~~~t~e~~~~~K~~i~~---~~~~~i~n~dd~~~~~~~~~--- 232 (445)
T PRK04308 159 KKADVWVLELSSFQLENTESLRPTAATVLNISEDHLDRYDDLLDYAHTKAKIFR---GDGVQVLNADDAFCRAMKRA--- 232 (445)
T ss_pred CCCcEEEEEeChHHhCcCcccCCCEEEEecCChHHhcccCCHHHHHHHHHHHhc---CCCEEEEeCCcHHHHHHhhc---
Confidence 246899999987763 23467999999999999999999999999999998874 46899999999876654321
Q ss_pred hcCccccCCcccccCcccccCCCCceEEEeeccCCCcceEeeeeecCCCCeEEEEEECCeee-eEEEeCCCchhHHHHHH
Q 009293 308 DTGLKYSGGVVSNQSSDLWGQGHDYKIITYGFSSFNDWYAESVCPNVQGGSDYILCERGRPL-AQISLQIPGVHNVLNSL 386 (538)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~d~~~~~i~~~~~~g~~f~~~~~~~~~-~~~~l~l~G~hnv~Nal 386 (538)
..++++|+.....|+.... .++ .+.+ .+... ..++++++|.||++|++
T Consensus 233 -----------------------~~~v~~~~~~~~~d~~~~~-----~~~-~~~~--~~~~~~~~~~l~l~G~hn~~Nal 281 (445)
T PRK04308 233 -----------------------GREVKWFSLEHEADFWLER-----ETG-RLKQ--GNEDLIATQDIPLQGLHNAANVM 281 (445)
T ss_pred -----------------------CCcEEEecCCCCCceeEec-----cCC-EEEE--cCceeeehhccCCcChhhHHHHH
Confidence 1356777765444554321 112 1222 22211 23578999999999999
Q ss_pred HHHHHHHHhcCCccCCcccHHHHHHHhccCCCCCCceEEEeeeCCeEEEEEC-CCCHHHHHHHHHHHHhhCCCCeEEEEE
Q 009293 387 AVIATVLTLIGDKRQSHESIACLKLPLSKFMGVSRRFDLIGTIYGCHIYDDF-AHHPTEVRAVLQAARQRFPNKALIAVF 465 (538)
Q Consensus 387 aAia~a~~lgi~~~~~~~~~~~I~~~L~~f~~~~gR~E~v~~~~g~~ii~D~-Ahnp~s~~a~l~~l~~~~~~~r~i~V~ 465 (538)
+|++++..+|++ .++++++|++|+++|||||++...+++.+|||| +|||+|+.++++.+. +++++|+
T Consensus 282 aAia~a~~lgi~-------~~~i~~~L~~f~~~~~R~e~~~~~~~~~~iDDs~~~n~~s~~~al~~~~-----~~~i~Il 349 (445)
T PRK04308 282 AAVALCEAVGLP-------REALLEHVKTFQGLPHRVEKIGEKNGVVFIDDSKGTNVGATAAAIAGLQ-----NPLFVIL 349 (445)
T ss_pred HHHHHHHHcCCC-------HHHHHHHHhhCCCCCCceEEEEeeCCeEEEEcCCCCCHHHHHHHHHhCC-----CCEEEEe
Confidence 999999999997 799999999999999999999876788999995 999999999888762 3688999
Q ss_pred ccCCCCchHHHHHHHHH-HhccCCEEEEeccCC
Q 009293 466 QPHTYSRLVVLKDDFAN-ALSEADQVVVSAVLV 497 (538)
Q Consensus 466 g~~~~~r~~~~~~~~~~-~~~~~D~vi~~~~~~ 497 (538)
|... +.+++.. +.. +...+|.|++++...
T Consensus 350 Gg~~--~~~~~~~-~~~~l~~~~~~vil~G~~~ 379 (445)
T PRK04308 350 GGMG--KGQDFTP-LRDALAGKAKGVFLIGVDA 379 (445)
T ss_pred CCCC--CCCCHHH-HHHHHHHhCcEEEEECCCH
Confidence 8432 2333322 333 334579999988653
No 16
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=9.8e-52 Score=445.07 Aligned_cols=365 Identities=22% Similarity=0.239 Sum_probs=268.8
Q ss_pred eEEEEeechhhHHHHHHHHHhCCCcEEEecCCCChhH----HHHHHCCCeEEeCCCCC------CcCCCCCCCCCCEEEE
Q 009293 77 WIHFVGIGGSGLSALAKLALKQGFEVSGSDLVWSSYM----EGLLEAGANLHIGHSVS------NIQGNDGSRFPNAVVA 146 (538)
Q Consensus 77 ~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~~~~----~~~~~~Ga~~~~~~~~~------~~~~~~~~~~~d~vvv 146 (538)
+|+|+|+|++||++ |++|+.+|++|.++|.+..+.. ..+.+.|+.+..++... .+ ..+|+||+
T Consensus 2 ~v~viG~G~sG~s~-a~~l~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~g~~~~~~~~~~~~------~~~d~vv~ 74 (459)
T PRK02705 2 IAHVIGLGRSGIAA-ARLLKAQGWEVVVSDRNDSPELLERQQELEQEGITVKLGKPLELESFQPWL------DQPDLVVV 74 (459)
T ss_pred eEEEEccCHHHHHH-HHHHHHCCCEEEEECCCCchhhHHHHHHHHHcCCEEEECCccchhhhhHHh------hcCCEEEE
Confidence 58999999999997 9999999999999997654332 24667799998875432 12 25899999
Q ss_pred cCCCCCCCHHHHHHHHCCCCeeeHHHHHHHHhcCCcEEEEeCCCCchHHHHHHHHHHHHcCCCeEEEeCCC---CCCCCC
Q 009293 147 SSAIPQDNVEILHAKSVGVPIYKRDYWLAKLTEKYNLIAVSGSHGKSTTASMLAYVLKAMGDDLTAIVGAH---VPQFPD 223 (538)
Q Consensus 147 sp~i~~~~~~l~~a~~~gi~vi~~~~~l~~~~~~~~vI~VTGTnGKTTTt~ml~~iL~~~G~~v~~~~g~~---~~~~~~ 223 (538)
||++|+++|.+++|++.|++++++.+++.+...+.++|+||||||||||++||+++|+.+|.++. ..|+. ......
T Consensus 75 s~gi~~~~~~~~~a~~~~i~v~~~~~~~~~~~~~~~~I~VTGT~GKTTTt~ml~~iL~~~g~~~~-~~gniG~~~~~~~~ 153 (459)
T PRK02705 75 SPGIPWDHPTLVELRERGIEVIGEIELAWRALKHIPWVGITGTNGKTTVTALLAHILQAAGLNAP-ACGNIGYAACELAL 153 (459)
T ss_pred CCCCCCCCHHHHHHHHcCCcEEEhHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHHHHcCCCeE-EecccChhHHHHHh
Confidence 99999999999999999999999999887765567899999999999999999999999998753 33332 111100
Q ss_pred -CccccCCCcEEEEeecCcceee-ccccCcEEEEcCCCccccccCCCHHHHHHHHHHHhhcccCCcEEEEcCCCHHHHHH
Q 009293 224 -GSIFYGGGKNFVLEADEYDGCF-LGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSL 301 (538)
Q Consensus 224 -~~~~~~~~~~~VlE~~~~d~~~-~~~~p~vaVITNI~~DHld~~gs~e~~~~~k~~~~~~~~~~~~~Vln~dd~~~~~~ 301 (538)
.+....+.+++|+|+++++... ..++|+++|||||++||+|+|||+|+|+++|.+++. +++.+|+|.||+....+
T Consensus 154 ~~~~~~~~~d~~VlE~~s~~l~~~~~~~p~iaVITNI~~DHld~~gt~e~~~~~K~~i~~---~~~~~Vln~dd~~~~~~ 230 (459)
T PRK02705 154 LRSGKAQKPDWIVAELSSYQIESSPELAPKIGIWTTFTPDHLERHGTLENYFAIKASLLE---RSEIRILNGDDPYLRQH 230 (459)
T ss_pred hhhccCCCCCEEEEEccccccccCcccCCCEEEEecCChhhhcccCCHHHHHHHHHHHhc---cCCEEEEECCCHHHHHH
Confidence 0012345689999998764321 237999999999999999999999999999999875 45899999999987665
Q ss_pred HHHhhhhcCccccCCcccccCcccccCCCCceEEEeeccC-CCcceEeeeeecCCCCeEEEEEECCeeeeE-EEeCCCch
Q 009293 302 LDQIKQDTGLKYSGGVVSNQSSDLWGQGHDYKIITYGFSS-FNDWYAESVCPNVQGGSDYILCERGRPLAQ-ISLQIPGV 379 (538)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~d~~~~~i~~~~~~g~~f~~~~~~~~~~~-~~l~l~G~ 379 (538)
.... .+.++|+... ..++...+.... .++.. +. .+..... .+++++|.
T Consensus 231 ~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~-~~~~~~~~~~l~l~G~ 280 (459)
T PRK02705 231 RSSW--------------------------PKGYWTSTQGKASLLGQADGWIL-EEGWV--VE-RGEPLFPLSALKMPGA 280 (459)
T ss_pred HhcC--------------------------CceEEeccCCccccccccceeEe-cCCEE--EE-CCcceeeHHHcCCccH
Confidence 3321 1123444321 111111111111 01111 11 1111112 35789999
Q ss_pred hHHHHHHHHHHHHHHhcCCccCCcccHHHHHHHhccCCCCCCceEEEeeeCCeEEEEE-CCCCHHHHHHHHHHHHhhCCC
Q 009293 380 HNVLNSLAVIATVLTLIGDKRQSHESIACLKLPLSKFMGVSRRFDLIGTIYGCHIYDD-FAHHPTEVRAVLQAARQRFPN 458 (538)
Q Consensus 380 hnv~NalaAia~a~~lgi~~~~~~~~~~~I~~~L~~f~~~~gR~E~v~~~~g~~ii~D-~Ahnp~s~~a~l~~l~~~~~~ 458 (538)
||++|+++|++++..+|++ ++.++++|++|++++||||++...+++.||+| |||||+|++++++.++
T Consensus 281 hn~~NalaAia~a~~lgv~-------~~~i~~~L~~f~~~~gR~e~~~~~~~~~ii~Ds~a~N~~s~~~al~~l~----- 348 (459)
T PRK02705 281 HNLQNLLLAVAAARLAGLS-------AEAIAEALRSFPGVPHRLERIGTINGIDFINDSKATNYDAAEVGLKAVP----- 348 (459)
T ss_pred HHHHHHHHHHHHHHHcCCC-------HHHHHHHHHhCCCCCCceEEEEeeCCcEEEEeCCCCCHHHHHHHHHhCC-----
Confidence 9999999999999999997 89999999999999999999986678899999 7999999999988763
Q ss_pred CeEEEEEccCCCCchHHHHHHHHHHhccCCEEEEeccC
Q 009293 459 KALIAVFQPHTYSRLVVLKDDFANALSEADQVVVSAVL 496 (538)
Q Consensus 459 ~r~i~V~g~~~~~r~~~~~~~~~~~~~~~D~vi~~~~~ 496 (538)
+++++|+|.+. +++++...+..+...+|.+|+++..
T Consensus 349 ~~~i~IlGg~~--~~~d~~~~~~~l~~~~~~vi~~g~~ 384 (459)
T PRK02705 349 GPVILIAGGEA--KQGDDSAWLKQIKAKAAAVLLFGEA 384 (459)
T ss_pred CCeEEEecCcc--CCCCHHHHHHHHHhheeEEEEECCC
Confidence 36788887433 2233333333344568999998754
No 17
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=1.1e-51 Score=448.33 Aligned_cols=371 Identities=20% Similarity=0.225 Sum_probs=271.0
Q ss_pred ceEEEEeechhhHHHHHHHHHhCCCcEEEecCCCC-hhHHHHHHC--CCeEEeCC-CCCCcCCCCCCCCCCEEEEcCCCC
Q 009293 76 GWIHFVGIGGSGLSALAKLALKQGFEVSGSDLVWS-SYMEGLLEA--GANLHIGH-SVSNIQGNDGSRFPNAVVASSAIP 151 (538)
Q Consensus 76 ~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~-~~~~~~~~~--Ga~~~~~~-~~~~~~~~~~~~~~d~vvvsp~i~ 151 (538)
++|+|+|+|+|||+ +|++|+.+|++|.|+|.+.. +..+.+.+. |+.+..++ .+..+. .+|+||+||||+
T Consensus 8 ~~i~v~G~G~sG~s-~a~~L~~~G~~v~~~D~~~~~~~~~~L~~~~~~~~~~~g~~~~~~~~------~~d~vv~sp~I~ 80 (498)
T PRK02006 8 PMVLVLGLGESGLA-MARWCARHGARLRVADTREAPPNLAALRAELPDAEFVGGPFDPALLD------GVDLVALSPGLS 80 (498)
T ss_pred CEEEEEeecHhHHH-HHHHHHHCCCEEEEEcCCCCchhHHHHHhhcCCcEEEeCCCchhHhc------CCCEEEECCCCC
Confidence 46999999999998 79999999999999997653 233456555 66776663 333332 589999999999
Q ss_pred CCC----HHHHHHHHCCCCeeeHHHHHHHHhc-------CCcEEEEeCCCCchHHHHHHHHHHHHcCCCeEEEeCCCCCC
Q 009293 152 QDN----VEILHAKSVGVPIYKRDYWLAKLTE-------KYNLIAVSGSHGKSTTASMLAYVLKAMGDDLTAIVGAHVPQ 220 (538)
Q Consensus 152 ~~~----~~l~~a~~~gi~vi~~~~~l~~~~~-------~~~vI~VTGTnGKTTTt~ml~~iL~~~G~~v~~~~g~~~~~ 220 (538)
+++ |++++|++.|++++++.+++....+ ..++|+||||||||||++||++||+.+|++++ ..|+..+.
T Consensus 81 ~~~~~~~~~~~~a~~~~i~v~~~~e~~~~~~~~l~~~~~~~~~I~VTGTnGKTTTt~ml~~iL~~~g~~~~-~~Gni~~~ 159 (498)
T PRK02006 81 PLEAALAPLVAAARERGIPVWGEIELFAQALAALGASGYAPKVLAITGTNGKTTTTALTGLLCERAGKKVA-VAGNISPA 159 (498)
T ss_pred CcccccCHHHHHHHHCCCcEEEHHHHHHHHHhhhccccCCCCEEEEECCCcHHHHHHHHHHHHHHcCCCEE-EECCCCHH
Confidence 987 9999999999999999998876542 24899999999999999999999999999854 45543321
Q ss_pred CCCC---ccccC-CCcEEEEeecCcce-eeccccCcEEEEcCCCccccccCCCHHHHHHHHHHHhhcccCCcEEEEcCCC
Q 009293 221 FPDG---SIFYG-GGKNFVLEADEYDG-CFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDS 295 (538)
Q Consensus 221 ~~~~---~~~~~-~~~~~VlE~~~~d~-~~~~~~p~vaVITNI~~DHld~~gs~e~~~~~k~~~~~~~~~~~~~Vln~dd 295 (538)
.... ....+ ..+++|+|.++++. ....++|+++|||||++||+|||||+|+|+++|.+++. +++.+|+|.||
T Consensus 160 ~~~~~~~~~~~~~~~~~~V~E~ss~~l~~~~~~~p~iaviTNI~~DHld~~gs~e~y~~aK~~i~~---~~~~~Vln~dd 236 (498)
T PRK02006 160 ALDKLMEAIDAGALPDVWVLELSSFQLETTHTLAPDAATVLNITQDHLDWHGSMAAYAAAKARIFG---PRTVRVLNRDD 236 (498)
T ss_pred HHHHHHHhhccCCCCcEEEEEccHHHhCcccccCCCEEEEcCCChhhhcccCCHHHHHHHHHHHcC---CCCEEEEeCCC
Confidence 1100 01111 23789999998865 33468999999999999999999999999999999885 47899999999
Q ss_pred HHHHHHHHHhhhhcCccccCCcccccCcccccCCCCceEEEeeccCC---CcceEeeee-----ecCCCCeEEEEEEC--
Q 009293 296 QCARSLLDQIKQDTGLKYSGGVVSNQSSDLWGQGHDYKIITYGFSSF---NDWYAESVC-----PNVQGGSDYILCER-- 365 (538)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~---~d~~~~~i~-----~~~~~g~~f~~~~~-- 365 (538)
+....+..... ..++++|+.... .++...... .. .....|.+...
T Consensus 237 ~~~~~~~~~~~------------------------~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 291 (498)
T PRK02006 237 ARVMAMAPPGG------------------------AADAVTFGLDEPAADGDYGLLRDNGMAWLVE-AEDRDAADPAPSR 291 (498)
T ss_pred HHHHHHhhccC------------------------CccEEEEeCCCccccccceEEecCCeEEEEe-cCccccccccccc
Confidence 98776543311 124566765321 233221100 00 00001111000
Q ss_pred ---Ce----------eee-EEEeCCCchhHHHHHHHHHHHHHHhcCCccCCcccHHHHHHHhccCCCCCCceEEEeeeCC
Q 009293 366 ---GR----------PLA-QISLQIPGVHNVLNSLAVIATVLTLIGDKRQSHESIACLKLPLSKFMGVSRRFDLIGTIYG 431 (538)
Q Consensus 366 ---~~----------~~~-~~~l~l~G~hnv~NalaAia~a~~lgi~~~~~~~~~~~I~~~L~~f~~~~gR~E~v~~~~g 431 (538)
+. ... .++++++|.||++|+++|++++..+|++ .+.++++|++|++++||||++...++
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~NalaAia~~~~lgi~-------~~~i~~aL~~f~~~~gR~e~~~~~~g 364 (498)
T PRK02006 292 RRKKDAAPPPDIRLKRLMPADALRIRGLHNAANALAALALARAIGLP-------AAPLLHGLREYRGEPHRVELVATIDG 364 (498)
T ss_pred ccccccccccccchhceeeHhhcCCCcHHHHHHHHHHHHHHHHcCCC-------HHHHHHHHhhCCCCCCceEEEEEECC
Confidence 00 011 1468899999999999999999999997 79999999999999999999976678
Q ss_pred eEEEEEC-CCCHHHHHHHHHHHHhhCCCCeEEEEEccCCCCchHHHHHHHHHHhccCCEEEEeccC
Q 009293 432 CHIYDDF-AHHPTEVRAVLQAARQRFPNKALIAVFQPHTYSRLVVLKDDFANALSEADQVVVSAVL 496 (538)
Q Consensus 432 ~~ii~D~-Ahnp~s~~a~l~~l~~~~~~~r~i~V~g~~~~~r~~~~~~~~~~~~~~~D~vi~~~~~ 496 (538)
+.+|+|| +|||+++.++++.+ .+|+++|+|..+ ++.++.+....+.+.+|.||+++..
T Consensus 365 ~~~idDs~~tn~~s~~~al~~~-----~~~ii~IlGg~~--~~~~~~~~~~~l~~~~~~vi~~G~~ 423 (498)
T PRK02006 365 VDYYDDSKGTNVGATVAALDGL-----AQRVVLIAGGDG--KGQDFSPLAAPVARHARAVVLIGRD 423 (498)
T ss_pred EEEEEcCCCCCHHHHHHHHHhC-----CCCEEEEEcCCC--CCCCHHHHHHHHHHhCCEEEEEcCC
Confidence 9999995 99999999888875 257888998643 2333333232234578999998754
No 18
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=1.5e-51 Score=442.77 Aligned_cols=363 Identities=21% Similarity=0.212 Sum_probs=267.3
Q ss_pred ceEEEEeechhhHHHHHHHHHhCCCcEEEecCCCCh---hHHHHHHCCCeEEeC-CCCCCcCCCCCCCCCCEEEEcCCCC
Q 009293 76 GWIHFVGIGGSGLSALAKLALKQGFEVSGSDLVWSS---YMEGLLEAGANLHIG-HSVSNIQGNDGSRFPNAVVASSAIP 151 (538)
Q Consensus 76 ~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~~---~~~~~~~~Ga~~~~~-~~~~~~~~~~~~~~~d~vvvsp~i~ 151 (538)
++|+|+|+|.||+++ |++|+.+|++|..+|.+... ...++.+ +.....+ +.++.+. .+|+||+|||||
T Consensus 9 ~~v~v~G~G~sG~~~-~~~l~~~g~~v~~~d~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~------~~d~vV~SpgI~ 80 (468)
T PRK04690 9 RRVALWGWGREGRAA-YRALRAHLPAQALTLFCNAVEAREVGALAD-AALLVETEASAQRLA------AFDVVVKSPGIS 80 (468)
T ss_pred CEEEEEccchhhHHH-HHHHHHcCCEEEEEcCCCcccchHHHHHhh-cCEEEeCCCChHHcc------CCCEEEECCCCC
Confidence 469999999999997 78999999999999975332 1224544 5445454 4444343 589999999999
Q ss_pred CCCHHHHHHHHCCCCeeeHHHH-HHHHhc----CCcEEEEeCCCCchHHHHHHHHHHHHcCCCeEEEeCCCCCCCCCCcc
Q 009293 152 QDNVEILHAKSVGVPIYKRDYW-LAKLTE----KYNLIAVSGSHGKSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSI 226 (538)
Q Consensus 152 ~~~~~l~~a~~~gi~vi~~~~~-l~~~~~----~~~vI~VTGTnGKTTTt~ml~~iL~~~G~~v~~~~g~~~~~~~~~~~ 226 (538)
+++|.+++|++.|+|++++.++ +....+ ..++|+|||||||||||+||++||+.+|.+ ..+.|+....+.....
T Consensus 81 ~~~p~~~~a~~~~i~i~~~~el~~~~~~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~~g~~-~~~~GniG~p~~~~~~ 159 (468)
T PRK04690 81 PYRPEALAAAARGTPFIGGTALWFAEHAARDGVVPGTVCVTGTKGKSTTTALLAHLLRAAGHR-TALVGNIGVPLLEVLA 159 (468)
T ss_pred CCCHHHHHHHHcCCcEEEHHHHHHHHHhhccCCCCCEEEEeCCCCHHHHHHHHHHHHHhcCCc-EEEcCCCCcchHHHhc
Confidence 9999999999999999999998 544332 247999999999999999999999999975 4556653211110011
Q ss_pred ccCCCcEEEEeecCcceeec---cccCcEEEEcCCCccccccCCCHHHHHHHHHHHhhcccCCcEEEEcCCCHHHHHHHH
Q 009293 227 FYGGGKNFVLEADEYDGCFL---GLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLD 303 (538)
Q Consensus 227 ~~~~~~~~VlE~~~~d~~~~---~~~p~vaVITNI~~DHld~~gs~e~~~~~k~~~~~~~~~~~~~Vln~dd~~~~~~~~ 303 (538)
.....+++|+|+++++.... .++|+++|||||++||+|||||+|+|.++|.+++...++ +.+|+|.||+....+..
T Consensus 160 ~~~~~~~~VlE~ss~q~~~~~~~~~~P~iaVItNI~~DHld~~gs~e~y~~aK~~i~~~~~~-~~~v~n~dd~~~~~~~~ 238 (468)
T PRK04690 160 PQPAPEYWAIELSSYQTGDVARSGARPELAVVLNLFPEHLDWHGGEARYYRDKLSLVTEGRP-RIALLNAADPRLAALQL 238 (468)
T ss_pred cCCCCcEEEEEecCCcccccccccCCCCEEEEcCCCHHHhcccCCHHHHHHHHHHHHhCCCC-CeEEEeCccHHHHHHhc
Confidence 12346899999999876433 378999999999999999999999999999999876554 67899999987554311
Q ss_pred HhhhhcCccccCCcccccCcccccCCCCceEEEeeccCCCcceEeeeeecCCCCeEEEEEECCeeeeEEEeCCCchhHHH
Q 009293 304 QIKQDTGLKYSGGVVSNQSSDLWGQGHDYKIITYGFSSFNDWYAESVCPNVQGGSDYILCERGRPLAQISLQIPGVHNVL 383 (538)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~d~~~~~i~~~~~~g~~f~~~~~~~~~~~~~l~l~G~hnv~ 383 (538)
. ..++++|+... ++... + .+.+...........++++|.||++
T Consensus 239 ----~----------------------~~~v~~~~~~~--~~~~~-------~--~~~~~~~~~~~~~~~~~l~G~h~~~ 281 (468)
T PRK04690 239 ----P----------------------DSEVVWFNHPD--GWHVR-------G--DVVYRGEQALFDTALVPLPGRHNRG 281 (468)
T ss_pred ----C----------------------CCeEEEeeCCc--cceec-------c--eEEEcCCceEEeeccccCccHhhHH
Confidence 0 13566776431 11100 0 1111101111124577899999999
Q ss_pred HHHHHHHHHHHhcCCccCCcccHHHHHHHhccCCCCCCceEEEeeeCCeEEEEE-CCCCHHHHHHHHHHHHhhCCCCeEE
Q 009293 384 NSLAVIATVLTLIGDKRQSHESIACLKLPLSKFMGVSRRFDLIGTIYGCHIYDD-FAHHPTEVRAVLQAARQRFPNKALI 462 (538)
Q Consensus 384 NalaAia~a~~lgi~~~~~~~~~~~I~~~L~~f~~~~gR~E~v~~~~g~~ii~D-~Ahnp~s~~a~l~~l~~~~~~~r~i 462 (538)
|+++|++++..+|++ .+.|+++|++|++||||||++...+++.+||| +||||++++++++.+ ++++++
T Consensus 282 Na~~A~a~~~~lgi~-------~~~i~~~l~~~~~~~gR~e~~~~~~g~~iidDs~ahNp~a~~~al~~~----~~~~i~ 350 (468)
T PRK04690 282 NLCAVLAALEALGLD-------AVALAPAAAGFRPLPNRLQELGSRDGITYVNDSISTTPHASLAALDCF----AGRRVA 350 (468)
T ss_pred HHHHHHHHHHHcCCC-------HHHHHHHHHhCCCCCCCcEEEEccCCeEEEEeCCCCCHHHHHHHHHhc----cCCcEE
Confidence 999999999999987 78999999999999999999986568899999 599999999887653 346899
Q ss_pred EEEccCCCCchHHHHHHHHH-Hhcc-CCEEEEeccCCCC
Q 009293 463 AVFQPHTYSRLVVLKDDFAN-ALSE-ADQVVVSAVLVFW 499 (538)
Q Consensus 463 ~V~g~~~~~r~~~~~~~~~~-~~~~-~D~vi~~~~~~~~ 499 (538)
+|+|.. .+++++ ..+.+ +.+. .+.+++++....|
T Consensus 351 ~i~Gg~--~k~kd~-~~l~~~l~~~~~~~v~~~g~~~~r 386 (468)
T PRK04690 351 LLVGGH--DRGLDW-TDFAAHMAQRAPLEIVTMGANGPR 386 (468)
T ss_pred EEEcCC--CCCCCH-HHHHHHHHhccCeEEEEeCCCHHH
Confidence 999953 244454 33444 3345 3778887765544
No 19
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=1.8e-51 Score=444.51 Aligned_cols=359 Identities=20% Similarity=0.189 Sum_probs=265.5
Q ss_pred ceEEEEeechhhHHHHHHHHHhCCCcEEEecCCCChhHHHHHHCCCeEEeCCC-CCCcCCCCCCCCCCEEEEcCCCCCCC
Q 009293 76 GWIHFVGIGGSGLSALAKLALKQGFEVSGSDLVWSSYMEGLLEAGANLHIGHS-VSNIQGNDGSRFPNAVVASSAIPQDN 154 (538)
Q Consensus 76 ~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~~~~~~~~~~Ga~~~~~~~-~~~~~~~~~~~~~d~vvvsp~i~~~~ 154 (538)
++|+|+|+|+||++++ ++|+.+|++|.++|.... ..+.+.+.|+.+..+.. ...+. .+|+||+|||||+++
T Consensus 13 ~~v~V~G~G~sG~aa~-~~L~~~G~~v~~~D~~~~-~~~~l~~~g~~~~~~~~~~~~l~------~~D~VV~SpGi~~~~ 84 (488)
T PRK03369 13 APVLVAGAGVTGRAVL-AALTRFGARPTVCDDDPD-ALRPHAERGVATVSTSDAVQQIA------DYALVVTSPGFRPTA 84 (488)
T ss_pred CeEEEEcCCHHHHHHH-HHHHHCCCEEEEEcCCHH-HHHHHHhCCCEEEcCcchHhHhh------cCCEEEECCCCCCCC
Confidence 4699999999999985 788899999999995533 34456677998766533 22232 579999999999999
Q ss_pred HHHHHHHHCCCCeeeHHHHHHHHhc------CCcEEEEeCCCCchHHHHHHHHHHHHcCCCeEEEeCCCCCCCCCCcccc
Q 009293 155 VEILHAKSVGVPIYKRDYWLAKLTE------KYNLIAVSGSHGKSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFY 228 (538)
Q Consensus 155 ~~l~~a~~~gi~vi~~~~~l~~~~~------~~~vI~VTGTnGKTTTt~ml~~iL~~~G~~v~~~~g~~~~~~~~~~~~~ 228 (538)
|.+++|++.|+||+++.+++.++.. ..++|+||||||||||++||+++|+.+|.+ ..+.|+....+. ....
T Consensus 85 p~~~~a~~~gi~v~~~iel~~~~~~~~~~~~~~~vIgITGTnGKTTTt~li~~iL~~~g~~-~~~~GniG~p~~--~~~~ 161 (488)
T PRK03369 85 PVLAAAAAAGVPIWGDVELAWRLDAAGCYGPPRRWLVVTGTNGKTTTTSMLHAMLIAAGRR-SVLCGNIGSPVL--DVLD 161 (488)
T ss_pred HHHHHHHHCCCcEeeHHHHhhhhhhhhccCCCCCEEEEECCCcHHHHHHHHHHHHHHcCCc-eEEeCCCchHHH--Hhcc
Confidence 9999999999999999999766632 347999999999999999999999999975 445555321110 1112
Q ss_pred CCCcEEEEeecCcceeec-cccCcEEEEcCCCccccccCCCHHHHHHHHHHHhhcccCCcEEEEcCCCHHHHHHHHHhhh
Q 009293 229 GGGKNFVLEADEYDGCFL-GLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQ 307 (538)
Q Consensus 229 ~~~~~~VlE~~~~d~~~~-~~~p~vaVITNI~~DHld~~gs~e~~~~~k~~~~~~~~~~~~~Vln~dd~~~~~~~~~~~~ 307 (538)
...+++|+|+++++.... .++|+++|||||++||+|||||+|+|+++|.+++. ++.+|+|.||+....+......
T Consensus 162 ~~~~~~VlE~ss~ql~~~~~~~P~vaVITNI~~DHLd~~gt~e~ya~aK~~I~~----~~~~Vln~dd~~~~~~~~~~~~ 237 (488)
T PRK03369 162 EPAELLAVELSSFQLHWAPSLRPEAGAVLNIAEDHLDWHGTMAAYAAAKARALT----GRVAVVGLDDSRAAALLDTAPA 237 (488)
T ss_pred CCCCEEEEECChHHhCcccccCCCEEEEcCCCHHHhhhcCCHHHHHHHHHHHhc----CCEEEEECCCHHHHHHHHhCCC
Confidence 356899999999876433 57899999999999999999999999999999975 3789999999987665432110
Q ss_pred hcCccccCCcccccCcccccCCCCceEEEeeccC--CCcceEeeeeecCCCCeEEEEEE-CCeee-eEEEeCCCchhHHH
Q 009293 308 DTGLKYSGGVVSNQSSDLWGQGHDYKIITYGFSS--FNDWYAESVCPNVQGGSDYILCE-RGRPL-AQISLQIPGVHNVL 383 (538)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~d~~~~~i~~~~~~g~~f~~~~-~~~~~-~~~~l~l~G~hnv~ 383 (538)
...+.|+... ..++...+ +..+.... .+... ..++++++|.||++
T Consensus 238 ------------------------~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~l~l~G~hnv~ 286 (488)
T PRK03369 238 ------------------------PVRVGFRLGEPAAGELGVRD-------GHLVDRAFADDLRLAPVASIPVPGPVGVL 286 (488)
T ss_pred ------------------------cEEEEEeCCCCCcCCceEEC-------CEEEEeccCCccceechhhcCCCcHhHHH
Confidence 1122332211 11222111 11110000 01001 13567899999999
Q ss_pred HHHHHHHHHHHhcCCccCCcccHHHHHHHhccCCCCCCceEEEeeeCCeEEEEE-CCCCHHHHHHHHHHHHhhCCCCeEE
Q 009293 384 NSLAVIATVLTLIGDKRQSHESIACLKLPLSKFMGVSRRFDLIGTIYGCHIYDD-FAHHPTEVRAVLQAARQRFPNKALI 462 (538)
Q Consensus 384 NalaAia~a~~lgi~~~~~~~~~~~I~~~L~~f~~~~gR~E~v~~~~g~~ii~D-~Ahnp~s~~a~l~~l~~~~~~~r~i 462 (538)
|+++|++++..+|++ .+.|+++|++|+++|||||++...+++.+||| |||||+|++++++.+ + +++
T Consensus 287 NalaAla~a~~lGi~-------~e~i~~~L~~f~~~~gR~E~v~~~~gv~iIDDS~AhNp~s~~aal~~~----~--~ii 353 (488)
T PRK03369 287 DALAAAALARAVGVP-------AGAIADALASFRVGRHRAEVVAVADGITYVDDSKATNPHAARASILAY----P--RVV 353 (488)
T ss_pred HHHHHHHHHHHcCCC-------HHHHHHHHHhCCCCCCccEEEEcCCCEEEEECCCCCCHHHHHHHHHhC----C--CeE
Confidence 999999999999997 79999999999999999999986678899999 799999999999743 2 588
Q ss_pred EEEccCCCCchHHHHHHHHH-HhccCCEEEEeccC
Q 009293 463 AVFQPHTYSRLVVLKDDFAN-ALSEADQVVVSAVL 496 (538)
Q Consensus 463 ~V~g~~~~~r~~~~~~~~~~-~~~~~D~vi~~~~~ 496 (538)
+|+|.. .+++++.. +.+ ..++.+.+++.+..
T Consensus 354 lI~GG~--~k~~d~~~-l~~~l~~~~~~vi~iG~~ 385 (488)
T PRK03369 354 WIAGGL--LKGASVDA-LVAEMASRLVGAVLIGRD 385 (488)
T ss_pred EEecCc--CCCCCHHH-HHHHHhhheeEEEEEcCC
Confidence 999533 34555434 444 33567888886643
No 20
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=5e-51 Score=438.21 Aligned_cols=364 Identities=24% Similarity=0.284 Sum_probs=276.7
Q ss_pred ceEEEEeechhhHHHHHHHHHhCCCcEEEecCCCC---hhHHHHHHCCCeEEeCCCCCCcCCCCCCCCCCEEEEcCCCCC
Q 009293 76 GWIHFVGIGGSGLSALAKLALKQGFEVSGSDLVWS---SYMEGLLEAGANLHIGHSVSNIQGNDGSRFPNAVVASSAIPQ 152 (538)
Q Consensus 76 ~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~---~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~d~vvvsp~i~~ 152 (538)
++|+|+|+|++|+++ |++|+.+|++|.++|.... +..+.+.+.|+.+..++...+... ..+|+||+||||++
T Consensus 6 k~v~v~G~g~~G~s~-a~~l~~~G~~V~~~d~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~----~~~d~vV~s~gi~~ 80 (447)
T PRK02472 6 KKVLVLGLAKSGYAA-AKLLHKLGANVTVNDGKPFSENPEAQELLEEGIKVICGSHPLELLD----EDFDLMVKNPGIPY 80 (447)
T ss_pred CEEEEEeeCHHHHHH-HHHHHHCCCEEEEEcCCCccchhHHHHHHhcCCEEEeCCCCHHHhc----CcCCEEEECCCCCC
Confidence 568999999999998 9999999999999996532 233556777998887765443320 12899999999999
Q ss_pred CCHHHHHHHHCCCCeeeHHHHHHHHhcCCcEEEEeCCCCchHHHHHHHHHHHHcCCCeEEEeCCCCCCCCCCccccCCCc
Q 009293 153 DNVEILHAKSVGVPIYKRDYWLAKLTEKYNLIAVSGSHGKSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGK 232 (538)
Q Consensus 153 ~~~~l~~a~~~gi~vi~~~~~l~~~~~~~~vI~VTGTnGKTTTt~ml~~iL~~~G~~v~~~~g~~~~~~~~~~~~~~~~~ 232 (538)
++|.+.+|++.|++++++.++..... +.++|+||||||||||++||+++|+.+|.++ ...|+............+..+
T Consensus 81 ~~~~~~~a~~~~i~v~~~~el~~~~~-~~~~I~VTGT~GKTTTt~ll~~iL~~~g~~~-~~~Gnig~p~~~~~~~~~~~~ 158 (447)
T PRK02472 81 TNPMVEKALEKGIPIITEVELAYLIS-EAPIIGITGSNGKTTTTTLIGEMLKAGGQHA-LLAGNIGYPASEVAQKATADD 158 (447)
T ss_pred CCHHHHHHHHCCCcEEeHHHHHHHhc-CCCEEEEeCCCchHHHHHHHHHHHHHCCCCe-EEEcccChhhHHHHhcCCCCC
Confidence 99999999999999999999866653 5689999999999999999999999999764 555653111100001123468
Q ss_pred EEEEeecCccee-eccccCcEEEEcCCCccccccCCCHHHHHHHHHHHhhcccCCcEEEEcCCCHHHHHHHHHhhhhcCc
Q 009293 233 NFVLEADEYDGC-FLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQDTGL 311 (538)
Q Consensus 233 ~~VlE~~~~d~~-~~~~~p~vaVITNI~~DHld~~gs~e~~~~~k~~~~~~~~~~~~~Vln~dd~~~~~~~~~~~~~~~~ 311 (538)
++|+|+++++.. ...++|+++|||||++||+|+|||+|+|+++|.+++...++++.+|+|.||+....+.++.
T Consensus 159 ~~V~E~ss~~~~~~~~~~P~iaVITnI~~DHld~~gt~e~i~~~K~~i~~~~~~~~~~v~n~dd~~~~~~~~~~------ 232 (447)
T PRK02472 159 TLVMELSSFQLMGIETFRPHIAVITNIYPAHLDYHGTFENYVAAKWNIQKNQTEDDYLVINFDQEEVKELAKQT------ 232 (447)
T ss_pred EEEEEcCchhhCcccccCCCEEEEeccChhhhcccCCHHHHHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHhhc------
Confidence 999999887643 2257899999999999999999999999999999998877789999999998776543321
Q ss_pred cccCCcccccCcccccCCCCceEEEeeccCC--CcceEeeeeecCCCCeEEEEEECCeee-eEEEeCCCchhHHHHHHHH
Q 009293 312 KYSGGVVSNQSSDLWGQGHDYKIITYGFSSF--NDWYAESVCPNVQGGSDYILCERGRPL-AQISLQIPGVHNVLNSLAV 388 (538)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~d~~~~~i~~~~~~g~~f~~~~~~~~~-~~~~l~l~G~hnv~NalaA 388 (538)
..++++|+.... .++... ++ .+.+ .+... ..++++++|.||++|+++|
T Consensus 233 -------------------~~~~~~~~~~~~~~~~~~~~-------~~-~~~~--~~~~~~~~~~l~l~G~hn~~Na~aA 283 (447)
T PRK02472 233 -------------------KATVVPFSTTEKVEDGAYIK-------DG-ALYF--KGEKIMAADDIVLPGSHNLENALAA 283 (447)
T ss_pred -------------------CceEEEeecCCCCcCceEEE-------CC-EEEE--CCceEEehhhcCCCCHHHHHHHHHH
Confidence 135667765321 111110 11 1111 12111 1236889999999999999
Q ss_pred HHHHHHhcCCccCCcccHHHHHHHhccCCCCCCceEEEeeeCCeEEEEEC-CCCHHHHHHHHHHHHhhCCCCeEEEEEcc
Q 009293 389 IATVLTLIGDKRQSHESIACLKLPLSKFMGVSRRFDLIGTIYGCHIYDDF-AHHPTEVRAVLQAARQRFPNKALIAVFQP 467 (538)
Q Consensus 389 ia~a~~lgi~~~~~~~~~~~I~~~L~~f~~~~gR~E~v~~~~g~~ii~D~-Ahnp~s~~a~l~~l~~~~~~~r~i~V~g~ 467 (538)
++++..+|++ .+.|+++|++|++++||||++...+++.+|+|| +|||+++.++++.+ .+++++|+|.
T Consensus 284 ia~~~~lgi~-------~~~i~~~L~~f~~~~~R~e~~~~~~g~~vi~D~~a~N~~s~~~al~~~-----~~~ii~I~g~ 351 (447)
T PRK02472 284 IAAAKLLGVS-------NEAIREVLSTFSGVKHRLQYVGTIDGRKFYNDSKATNILATQKALSGF-----NQPVVLLAGG 351 (447)
T ss_pred HHHHHHcCCC-------HHHHHHHHHhCCCCCCcceEEEEECCeEEEECCCCCCHHHHHHHHHhC-----CCCEEEEECC
Confidence 9999999997 789999999999999999999766789999995 99999998877653 2578999995
Q ss_pred CCCCchHHHHHHHHHHhccCCEEEEeccC
Q 009293 468 HTYSRLVVLKDDFANALSEADQVVVSAVL 496 (538)
Q Consensus 468 ~~~~r~~~~~~~~~~~~~~~D~vi~~~~~ 496 (538)
. .+.++ +.++.+.+..+|.|++++..
T Consensus 352 ~--~~~~~-~~~l~~~l~~~~~v~~~G~~ 377 (447)
T PRK02472 352 L--DRGNE-FDELVPYLKNVKAMVVFGET 377 (447)
T ss_pred C--CCCCC-HHHHHHHHhccCEEEEECCC
Confidence 2 33444 35666655558999998643
No 21
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=1.1e-50 Score=439.05 Aligned_cols=370 Identities=21% Similarity=0.200 Sum_probs=272.9
Q ss_pred ceEEEEeechhhHHHHHHHHHhCCCcEEEecCCCCh----hHHHHHHCCCeEEeCCCCCCcCCCCCCCCCCEEEEcCCCC
Q 009293 76 GWIHFVGIGGSGLSALAKLALKQGFEVSGSDLVWSS----YMEGLLEAGANLHIGHSVSNIQGNDGSRFPNAVVASSAIP 151 (538)
Q Consensus 76 ~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~~----~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~d~vvvsp~i~ 151 (538)
++|+|+|.|++|+++ |.+|+.+|++|.+.|....+ ..+.+.+.|+.+..++..... ..+|+||+|||++
T Consensus 17 ~~v~viG~G~~G~~~-A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~------~~~D~Vv~s~Gi~ 89 (480)
T PRK01438 17 LRVVVAGLGVSGFAA-ADALLELGARVTVVDDGDDERHRALAAILEALGATVRLGPGPTLP------EDTDLVVTSPGWR 89 (480)
T ss_pred CEEEEECCCHHHHHH-HHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCCEEEECCCcccc------CCCCEEEECCCcC
Confidence 579999999999996 89999999999999965432 234577789999887654321 1589999999999
Q ss_pred CCCHHHHHHHHCCCCeeeHHHHHHHHhc---CCcEEEEeCCCCchHHHHHHHHHHHHcCCCeEEEeCCCCCCCCCCcccc
Q 009293 152 QDNVEILHAKSVGVPIYKRDYWLAKLTE---KYNLIAVSGSHGKSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFY 228 (538)
Q Consensus 152 ~~~~~l~~a~~~gi~vi~~~~~l~~~~~---~~~vI~VTGTnGKTTTt~ml~~iL~~~G~~v~~~~g~~~~~~~~~~~~~ 228 (538)
+++|.+..|++.|++++++.++++.... +.++|+||||||||||++||+++|+.+|.++ .+.|+....+.......
T Consensus 90 ~~~~~~~~a~~~gi~v~~~~e~~~~~~~~~~~~~~I~VTGTnGKTTTt~mi~~iL~~~g~~~-~~~Gnig~~~~~~~~~~ 168 (480)
T PRK01438 90 PDAPLLAAAADAGIPVWGEVELAWRLRDPDRPAPWLAVTGTNGKTTTVQMLASMLRAAGLRA-AAVGNIGTPVLDAVRDP 168 (480)
T ss_pred CCCHHHHHHHHCCCeecchHHHHHHhhhccCCCCEEEEeCCCcHHHHHHHHHHHHHHcCCCe-EEECCccHHHHHHHhcC
Confidence 9999999999999999999998876543 4579999999999999999999999999875 45565211110000112
Q ss_pred CCCcEEEEeecCcceeec-cccCcEEEEcCCCccccccCCCHHHHHHHHHHHhhcccCCcEEEEcCCCHHHHHHHHHhhh
Q 009293 229 GGGKNFVLEADEYDGCFL-GLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQ 307 (538)
Q Consensus 229 ~~~~~~VlE~~~~d~~~~-~~~p~vaVITNI~~DHld~~gs~e~~~~~k~~~~~~~~~~~~~Vln~dd~~~~~~~~~~~~ 307 (538)
.+.+++|+|+++.+.... .++|+++|||||++||+|||||+|+|+++|.+++... .+.+|+|.||+....+..+.+.
T Consensus 169 ~~~~~~V~E~ss~~l~~~~~i~P~iaVITNI~~DHld~lgt~e~ia~~K~~I~~~~--~~~~v~n~dd~~~~~~~~~~~~ 246 (480)
T PRK01438 169 EGYDVLAVELSSFQLHWSPSVSPHSAAVLNLAPDHLDWHGSMEAYAAAKARIYEGT--TVACVYNVADPATEDLVEEADV 246 (480)
T ss_pred CCCCEEEEEcChHHhCcCcccCCCEEEEecCChhhccccCCHHHHHHHHHHHHhCC--CceEEEeCCcHHHHHHHhhhcc
Confidence 346899999988765432 4689999999999999999999999999999998742 4688999999987776554321
Q ss_pred hcCccccCCcccccCcccccCCCCceEEEeeccC--CCcceEee-eeecCCCCeEEEEEECCe--eeeE-EEeCCCchhH
Q 009293 308 DTGLKYSGGVVSNQSSDLWGQGHDYKIITYGFSS--FNDWYAES-VCPNVQGGSDYILCERGR--PLAQ-ISLQIPGVHN 381 (538)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~d~~~~~-i~~~~~~g~~f~~~~~~~--~~~~-~~l~l~G~hn 381 (538)
.. +.++++|+... ..++...+ .... ..|.....+. .... .+++++|.||
T Consensus 247 ~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~l~G~hn 301 (480)
T PRK01438 247 VE---------------------GARAIGFTLGTPGPSQLGVVDGILVD----RAFVEDRQTSALELATLEDLRPAAPHN 301 (480)
T ss_pred cC---------------------CceEEEEeCCCCCCCCceEECCEEEE----EeeccccccccceeeeHHHcCCCCHHH
Confidence 10 13566676432 12332211 0000 0111110000 0011 2478999999
Q ss_pred HHHHHHHHHHHHHhcCCccCCcccHHHHHHHhccCCCCCCceEEEeeeCCeEEEEE-CCCCHHHHHHHHHHHHhhCCCCe
Q 009293 382 VLNSLAVIATVLTLIGDKRQSHESIACLKLPLSKFMGVSRRFDLIGTIYGCHIYDD-FAHHPTEVRAVLQAARQRFPNKA 460 (538)
Q Consensus 382 v~NalaAia~a~~lgi~~~~~~~~~~~I~~~L~~f~~~~gR~E~v~~~~g~~ii~D-~Ahnp~s~~a~l~~l~~~~~~~r 460 (538)
++|+++|++++..+|++ .+.|+++|++|++++||||++...+++.+||| |||||++++++++.+ ++
T Consensus 302 ~~Na~aAia~~~~lgi~-------~~~i~~~L~~~~~~~gR~E~i~~~~~~~iiDDs~ahNp~a~~aaL~~l------~~ 368 (480)
T PRK01438 302 IANALAAAALARSFGVP-------PAAVRDGLRAFRPDAHRIEHVADADGVTWVDDSKATNPHAAAASLAAY------PS 368 (480)
T ss_pred HHHHHHHHHHHHHcCCC-------HHHHHHHHHhCCCCCCceEEEEEECCEEEEecCccCCHHHHHHHHHhC------CC
Confidence 99999999999999997 79999999999999999999976567788888 899999999988776 26
Q ss_pred EEEEEc-cCCCCchHHHHHHHHHHhccCCEEEEeccC
Q 009293 461 LIAVFQ-PHTYSRLVVLKDDFANALSEADQVVVSAVL 496 (538)
Q Consensus 461 ~i~V~g-~~~~~r~~~~~~~~~~~~~~~D~vi~~~~~ 496 (538)
+++|+| .. +++++...+....+.+|.+|+++..
T Consensus 369 i~~I~gG~~---~~kd~~~~~~~l~~~~~~vi~~g~~ 402 (480)
T PRK01438 369 VVWIAGGLA---KGADFDDLVRRAAGRLRGVVLIGAD 402 (480)
T ss_pred EEEEEeccc---CCCCHHHHHHHHHhhceEEEEECCC
Confidence 888996 43 3444433333344568999999654
No 22
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=1.6e-49 Score=426.80 Aligned_cols=366 Identities=22% Similarity=0.298 Sum_probs=274.5
Q ss_pred ceEEEEeechhhHHHHHHHHHhCCCcEEEecCCCChh----HHHHHHCCCeEEeCCCCCCcCCCCCCCCCCEEEEcCCCC
Q 009293 76 GWIHFVGIGGSGLSALAKLALKQGFEVSGSDLVWSSY----MEGLLEAGANLHIGHSVSNIQGNDGSRFPNAVVASSAIP 151 (538)
Q Consensus 76 ~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~~~----~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~d~vvvsp~i~ 151 (538)
++|+|+|.|++|+ ++|+.|+.+|++|.++|....+. .+++.+.|+.+..++...... ..+|+||++++++
T Consensus 6 k~v~iiG~g~~G~-~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-----~~~d~vv~~~g~~ 79 (450)
T PRK14106 6 KKVLVVGAGVSGL-ALAKFLKKLGAKVILTDEKEEDQLKEALEELGELGIELVLGEYPEEFL-----EGVDLVVVSPGVP 79 (450)
T ss_pred CEEEEECCCHHHH-HHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCEEEeCCcchhHh-----hcCCEEEECCCCC
Confidence 6799999999999 56999999999999999764322 244556688877665443321 2589999999999
Q ss_pred CCCHHHHHHHHCCCCeeeHHHHHHHHhcCCcEEEEeCCCCchHHHHHHHHHHHHcCCCeEEEeCCCCCCCCCCccccCCC
Q 009293 152 QDNVEILHAKSVGVPIYKRDYWLAKLTEKYNLIAVSGSHGKSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGG 231 (538)
Q Consensus 152 ~~~~~l~~a~~~gi~vi~~~~~l~~~~~~~~vI~VTGTnGKTTTt~ml~~iL~~~G~~v~~~~g~~~~~~~~~~~~~~~~ 231 (538)
+++|.+.+|++.|++++++.+++..... .++|+||||||||||++||+++|+..|.. +.+.|+....+........+.
T Consensus 80 ~~~~~~~~a~~~~i~~~~~~~~~~~~~~-~~vI~ITGS~GKTTt~~~l~~iL~~~g~~-~~~~g~ig~~~~~~~~~~~~~ 157 (450)
T PRK14106 80 LDSPPVVQAHKKGIEVIGEVELAYRFSK-APIVAITGTNGKTTTTTLLGEIFKNAGRK-TLVAGNIGYPLIDAVEEYGED 157 (450)
T ss_pred CCCHHHHHHHHCCCcEEeHHHHHHhhcC-CCEEEEeCCCchHHHHHHHHHHHHHcCCC-eEEeCcccHHHHHHHhcCCCC
Confidence 9999999999999999999998887655 79999999999999999999999999975 455665211111001112356
Q ss_pred cEEEEeecCccee-eccccCcEEEEcCCCccccccCCCHHHHHHHHHHHhhcccCCcEEEEcCCCHHHHHHHHHhhhhcC
Q 009293 232 KNFVLEADEYDGC-FLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQDTG 310 (538)
Q Consensus 232 ~~~VlE~~~~d~~-~~~~~p~vaVITNI~~DHld~~gs~e~~~~~k~~~~~~~~~~~~~Vln~dd~~~~~~~~~~~~~~~ 310 (538)
+++|+|.++.+.. ...++|+++|||||++||+++|||+|+|+++|.+++...++.+.+++|.|++....+....
T Consensus 158 ~~~v~E~~~~~~~~~~~~~P~i~VITnI~~dHl~~~gt~e~ia~~K~~i~~~~~~~~~~vln~d~~~~~~~~~~~----- 232 (450)
T PRK14106 158 DIIVAEVSSFQLETIKEFKPKVGCILNITPDHLDRHKTMENYIKAKARIFENQRPSDYTVLNYDDPRTRSLAKKA----- 232 (450)
T ss_pred CEEEEEcChhhhccccccCCCEEEEecCCcchhcccCCHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHhhc-----
Confidence 8999999886543 3458999999999999999999999999999999998888889999999998765543321
Q ss_pred ccccCCcccccCcccccCCCCceEEEeeccCC--CcceEeeeeecCCCCeEEEEEECCeeee-EEEeCCCchhHHHHHHH
Q 009293 311 LKYSGGVVSNQSSDLWGQGHDYKIITYGFSSF--NDWYAESVCPNVQGGSDYILCERGRPLA-QISLQIPGVHNVLNSLA 387 (538)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~d~~~~~i~~~~~~g~~f~~~~~~~~~~-~~~l~l~G~hnv~Nala 387 (538)
..++++|+.+.. .+.... .+...+.......... .+.++++|.||++|+++
T Consensus 233 --------------------~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~l~G~h~~~Na~a 286 (450)
T PRK14106 233 --------------------KARVIFFSRKSLLEEGVFVK------NGKIVISLGGKEEEVIDIDEIFIPGEHNLENALA 286 (450)
T ss_pred --------------------CceEEEEecCccCcCceEEE------CCEEEEecCCCcceEEEHHHcCCCCHHHHHHHHH
Confidence 145677775421 111110 1111122210010001 13678999999999999
Q ss_pred HHHHHHHhcCCccCCcccHHHHHHHhccCCCCCCceEEEeeeCCeEEEEE-CCCCHHHHHHHHHHHHhhCCCCeEEEEEc
Q 009293 388 VIATVLTLIGDKRQSHESIACLKLPLSKFMGVSRRFDLIGTIYGCHIYDD-FAHHPTEVRAVLQAARQRFPNKALIAVFQ 466 (538)
Q Consensus 388 Aia~a~~lgi~~~~~~~~~~~I~~~L~~f~~~~gR~E~v~~~~g~~ii~D-~Ahnp~s~~a~l~~l~~~~~~~r~i~V~g 466 (538)
|++++..+|++ .++++++|++|++||||||.+...++..+|+| |||||+++++++++++ +++++|+|
T Consensus 287 Aia~~~~lgi~-------~~~i~~~L~~~~~~~gR~e~i~~~~~~~vi~D~~ahNP~s~~~~l~~l~-----~~~i~v~g 354 (450)
T PRK14106 287 ATAAAYLLGIS-------PDVIANTLKTFKGVEHRIEFVAEINGVKFINDSKGTNPDAAIKALEAYE-----TPIVLIAG 354 (450)
T ss_pred HHHHHHHcCCC-------HHHHHHHHHhCCCCCcceEEEeeECCEEEEeCCCccCHHHHHHHHHhCC-----CCeEEEeC
Confidence 99999999997 79999999999999999999875567889999 7999999999988873 25778887
Q ss_pred cCCCCchHHHHHHHHH-HhccCCEEEEecc
Q 009293 467 PHTYSRLVVLKDDFAN-ALSEADQVVVSAV 495 (538)
Q Consensus 467 ~~~~~r~~~~~~~~~~-~~~~~D~vi~~~~ 495 (538)
.. .+++++. ++.. +...+|.+++++.
T Consensus 355 ~~--~~~k~~~-~~~~~l~~~~~~vi~~g~ 381 (450)
T PRK14106 355 GY--DKGSDFD-EFAKAFKEKVKKLILLGE 381 (450)
T ss_pred Cc--CCCCCHH-HHHHHHHhhCCEEEEEcC
Confidence 43 3444443 3444 3346899999864
No 23
>PRK10773 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; Reviewed
Probab=100.00 E-value=2.5e-49 Score=424.63 Aligned_cols=376 Identities=17% Similarity=0.194 Sum_probs=279.5
Q ss_pred hccCCceeeecccccccchhhhhhhcCCCceEEEEeechhhHHHHHHHHHhCCCcEEEecCCCChhHHHHHHCCCeEEeC
Q 009293 47 MKKKNSVSVLTNCTFKRNEECIVDFKNRKGWIHFVGIGGSGLSALAKLALKQGFEVSGSDLVWSSYMEGLLEAGANLHIG 126 (538)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~~~~~~~~~~Ga~~~~~ 126 (538)
|+++++.+.+.+.. .+.+..+..+..|+|+| .-|. .|++.+|.++|||+ |+.++.++|+.+++.
T Consensus 4 ~~~~~l~~~~~~~~-~~~~~~i~~v~~DSR~v---~~g~-------lFval~G~~~dGh~-----fi~~A~~~Ga~~vv~ 67 (453)
T PRK10773 4 VTLSQLADILNGEL-QGADITIDAVTTDTRKV---TPGC-------LFVALKGERFDAHD-----FADDAKAAGAGALLV 67 (453)
T ss_pred CCHHHHHHHhCCcc-cCCCeeeeEEEeeCCCC---CCCc-------EEEEecCCCCCHHH-----HHHHHHHCCCeEEEE
Confidence 55667777776654 33345677889999987 3332 44455999999999 999999999998887
Q ss_pred CCCCCcCCCCCCCCCCEEEEcCCCCCCCHHHHHHHHCCCCeeeHHHHHHHHhcCCcEEEEeCCCCchHHHHHHHHHHHHc
Q 009293 127 HSVSNIQGNDGSRFPNAVVASSAIPQDNVEILHAKSVGVPIYKRDYWLAKLTEKYNLIAVSGSHGKSTTASMLAYVLKAM 206 (538)
Q Consensus 127 ~~~~~~~~~~~~~~~d~vvvsp~i~~~~~~l~~a~~~gi~vi~~~~~l~~~~~~~~vI~VTGTnGKTTTt~ml~~iL~~~ 206 (538)
+..... ....+++.. ...++... ..++.. ....++||||||||||||++||+++|+..
T Consensus 68 ~~~~~~-------~~p~i~v~d----~~~al~~l----------a~~~~~-~~~~~vI~VTGSnGKTTT~~ml~~iL~~~ 125 (453)
T PRK10773 68 SRPLDI-------DLPQLVVKD----TRLAFGQL----------AAWVRQ-QVPARVVALTGSSGKTSVKEMTAAILRQC 125 (453)
T ss_pred ecCcCC-------CCCEEEECC----HHHHHHHH----------HHHHHh-cCCCCEEEEcCCCchHHHHHHHHHHHHhc
Confidence 543110 122344421 11222211 112221 12368999999999999999999999999
Q ss_pred CCCeEEEeCCCCCCCCCCc---cccCCCcEEEEeec-----CcceeeccccCcEEEEcCCCccccccCCCHHHHHHHHHH
Q 009293 207 GDDLTAIVGAHVPQFPDGS---IFYGGGKNFVLEAD-----EYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRR 278 (538)
Q Consensus 207 G~~v~~~~g~~~~~~~~~~---~~~~~~~~~VlE~~-----~~d~~~~~~~p~vaVITNI~~DHld~~gs~e~~~~~k~~ 278 (538)
|.. ..+.|+.+..++... ...++.+++|+|++ +++.....++|+++|||||++||+|+|||+|+|+++|.+
T Consensus 126 g~~-~~t~gn~n~~~G~~~~~~~~~~~~~~~V~E~g~~~~gei~~~~~~~~p~iaViTNI~~dHld~~gs~e~~~~aK~~ 204 (453)
T PRK10773 126 GNT-LYTAGNLNNDIGVPLTLLRLTPEHDYAVIELGANHQGEIAYTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGE 204 (453)
T ss_pred Ccc-cccCccccCCcccccHHhcCCCCCcEEEEEcCCCCcchhHHhcCccCCCEEEEeCCCHHHHhhcCCHHHHHHHHHH
Confidence 874 455565544443221 11245789999986 344445678999999999999999999999999999999
Q ss_pred HhhcccCCcEEEEcCCCHHHHHHHHHhhhhcCccccCCcccccCcccccCCCCceEEEeeccC--CCcceEeeeeecCCC
Q 009293 279 FLKQIRVGGHLVICGDSQCARSLLDQIKQDTGLKYSGGVVSNQSSDLWGQGHDYKIITYGFSS--FNDWYAESVCPNVQG 356 (538)
Q Consensus 279 ~~~~~~~~~~~Vln~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~d~~~~~i~~~~~~ 356 (538)
++..+++++.+|+|.||+....+..... ..++++|+... .+|+++.++... .+
T Consensus 205 l~~~~~~~g~~vln~Dd~~~~~~~~~~~------------------------~~~~~~~g~~~~~~~d~~~~~i~~~-~~ 259 (453)
T PRK10773 205 IFSGLPENGIAIMNADSNDWLNWQSVIG------------------------SKTVWRFSPNAANSVDFTATNIHVT-SH 259 (453)
T ss_pred HHcccCCCCEEEEECCcHhHHHHHHHhc------------------------CCcEEEEeCCCCCcCcEEEEEEEEe-CC
Confidence 9998888899999999998665543221 12467788643 357887777654 24
Q ss_pred CeEEEEEECCeeeeEEEeCCCchhHHHHHHHHHHHHHHhcCCccCCcccHHHHHHHhccCCCCCCceEEEeeeCCeEEEE
Q 009293 357 GSDYILCERGRPLAQISLQIPGVHNVLNSLAVIATVLTLIGDKRQSHESIACLKLPLSKFMGVSRRFDLIGTIYGCHIYD 436 (538)
Q Consensus 357 g~~f~~~~~~~~~~~~~l~l~G~hnv~NalaAia~a~~lgi~~~~~~~~~~~I~~~L~~f~~~~gR~E~v~~~~g~~ii~ 436 (538)
+..|.+..+... ..+.++++|.||++|+++|++++..+|++ .+.|+++|++|++++||||.+...++..+||
T Consensus 260 ~~~f~~~~~~~~-~~~~l~l~G~hnv~NalaAia~a~~lGi~-------~~~i~~~L~~~~~~~gR~e~v~~~~g~~iID 331 (453)
T PRK10773 260 GTEFTLHTPTGS-VDVLLPLPGRHNIANALAAAALAMSVGAT-------LDAVKAGLANLKAVPGRLFPIQLAEGQLLLD 331 (453)
T ss_pred eeEEEEEecCce-EEEEecCCcHhHHHHHHHHHHHHHHcCCC-------HHHHHHHHHhCCCCCCceeEEECCCCeEEEE
Confidence 567777654333 46889999999999999999999999997 7999999999999999999987556789999
Q ss_pred E-CCCCHHHHHHHHHHHHhhCCCCeEEEEEccCC--CCchHHHHHHHHHHhc--cCCEEEEeccC
Q 009293 437 D-FAHHPTEVRAVLQAARQRFPNKALIAVFQPHT--YSRLVVLKDDFANALS--EADQVVVSAVL 496 (538)
Q Consensus 437 D-~Ahnp~s~~a~l~~l~~~~~~~r~i~V~g~~~--~~r~~~~~~~~~~~~~--~~D~vi~~~~~ 496 (538)
| |||||+|++++++++++. + +|+++|+|.+. +.+...++.++.+.+. .+|.+|+++..
T Consensus 332 DsYn~nP~s~~aaL~~l~~~-~-~r~i~VlG~m~elG~~~~~~h~~~~~~~~~~~~d~v~~~G~~ 394 (453)
T PRK10773 332 DSYNANVGSMTAAAQVLAEM-P-GYRVMVVGDMAELGAESEACHRQVGEAAKAAGIDKVLSVGKL 394 (453)
T ss_pred cCCCCCHHHHHHHHHHHHhC-C-CCEEEEECChhhcchHHHHHHHHHHHHHHHcCCCEEEEEChh
Confidence 9 999999999999999985 4 46689999653 3566777888887553 68999999854
No 24
>PRK14093 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanine ligase; Provisional
Probab=100.00 E-value=3.5e-49 Score=426.21 Aligned_cols=383 Identities=20% Similarity=0.185 Sum_probs=283.4
Q ss_pred hccCCceeeecccccccchhhhhhhcCCCceEEEEeechhhHHHHHHHHHhCCCcEEEecCCCChhHHHHHHCCCeEEeC
Q 009293 47 MKKKNSVSVLTNCTFKRNEECIVDFKNRKGWIHFVGIGGSGLSALAKLALKQGFEVSGSDLVWSSYMEGLLEAGANLHIG 126 (538)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~~~~~~~~~~Ga~~~~~ 126 (538)
|++++|.+++.+....+.+..+..+..|+|.| .-|. .|++.+|.++|||| |+.++.++||.+++.
T Consensus 7 ~~~~~i~~~~~~~~~~~~~~~i~~i~~DSR~v---~~g~-------lFval~G~~~DGh~-----fi~~A~~~GA~~~v~ 71 (479)
T PRK14093 7 WTSDAMAEAMGATRSGALPRDVTGISIDSRTL---APGD-------AYFAIKGDVHDGHA-----FVAAALKAGAALAVV 71 (479)
T ss_pred cCHHHHHHHhCCeecCCCCCceeEEEeecCCC---CCCC-------EEEEeccCcCChHH-----HHHHHHHcCCcEEEE
Confidence 56667777766654332235677889998877 3332 44445999999999 999999999998887
Q ss_pred CCCC--CcCCCCCCCCCCEEEEcCCCCCCCHHHHHHHHCCCCeeeHHHHHHHHhcCCcEEEEeCCCCchHHHHHHHHHHH
Q 009293 127 HSVS--NIQGNDGSRFPNAVVASSAIPQDNVEILHAKSVGVPIYKRDYWLAKLTEKYNLIAVSGSHGKSTTASMLAYVLK 204 (538)
Q Consensus 127 ~~~~--~~~~~~~~~~~d~vvvsp~i~~~~~~l~~a~~~gi~vi~~~~~l~~~~~~~~vI~VTGTnGKTTTt~ml~~iL~ 204 (538)
+.+. ... ....++++. +...++.... ..++.+ .+.++|+||||||||||++||+++|+
T Consensus 72 ~~~~~~~~~-----~~~~~i~V~----d~~~al~~la---------~~~~~~--~~~~vIgVTGS~GKTTT~~ml~~iL~ 131 (479)
T PRK14093 72 ERAQRDKFA-----ADAPLLVVD----DVLAALRDLG---------RAARAR--LEAKVIAVTGSVGKTSTKEALRGVLG 131 (479)
T ss_pred ecccccccC-----CCCCEEEEC----CHHHHHHHHH---------HHHHHh--cCCCEEEEcCCCCccHHHHHHHHHHH
Confidence 5421 110 012244442 2222333221 123332 35789999999999999999999999
Q ss_pred HcCCCeEEEeCCCCCCCCCC----ccccCCCcEEEEeec-----CcceeeccccCcEEEEcCCCccccccCCCHHHHHHH
Q 009293 205 AMGDDLTAIVGAHVPQFPDG----SIFYGGGKNFVLEAD-----EYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSI 275 (538)
Q Consensus 205 ~~G~~v~~~~g~~~~~~~~~----~~~~~~~~~~VlE~~-----~~d~~~~~~~p~vaVITNI~~DHld~~gs~e~~~~~ 275 (538)
..|.. ..+.|+.+..++.. +. ..+.+++|+|++ +++..+..++|+++|||||++||+|+|||+|+|+++
T Consensus 132 ~~g~~-~~~~g~~n~~iG~p~~l~~~-~~~~~~~V~E~g~s~~~e~~~~~~~~~PdiaViTNI~~DHLd~~gt~e~~~~a 209 (479)
T PRK14093 132 AQGET-HASVASFNNHWGVPLSLARC-PADARFAVFEIGMNHAGEIEPLVKMVRPHVAIITTVEPVHLEFFSGIEAIADA 209 (479)
T ss_pred hcCCc-cCCCccCCCccchhHHHHcC-CCCCcEEEEEeCCCCCchHHHHhcccCCCEEEEcCCCHHHHhhcCCHHHHHHH
Confidence 99864 45566554443321 11 235689999975 234445578999999999999999999999999999
Q ss_pred HHHHhhcccCCcEEEEcCCCHHHHHHHHHhhhhcCccccCCcccccCcccccCCCCceEEEeeccCCCcceEeeeeecCC
Q 009293 276 FRRFLKQIRVGGHLVICGDSQCARSLLDQIKQDTGLKYSGGVVSNQSSDLWGQGHDYKIITYGFSSFNDWYAESVCPNVQ 355 (538)
Q Consensus 276 k~~~~~~~~~~~~~Vln~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~d~~~~~i~~~~~ 355 (538)
|.+++..+++++.+|+|.||+....+........ ..++++||.+..+++++.++....
T Consensus 210 K~~l~~~~~~~g~~VlN~Dd~~~~~l~~~~~~~~---------------------~~~vi~~g~~~~~~~~~~~~~~~~- 267 (479)
T PRK14093 210 KAEIFTGLEPGGAAVLNRDNPQFDRLAASARAAG---------------------IARIVSFGADEKADARLLDVALHA- 267 (479)
T ss_pred HHHHHccCCCCCEEEEeCCcHHHHHHHHHhhhcc---------------------CCcEEEEeCCCCccEEEEEEEEcC-
Confidence 9999988888899999999998777654322100 025678887655677777765442
Q ss_pred CCeEEEEEECCeeeeEEEeCCCchhHHHHHHHHHHHHHHhcCCccCCcccHHHHHHHhccCCCCCCceEEEee---eCCe
Q 009293 356 GGSDYILCERGRPLAQISLQIPGVHNVLNSLAVIATVLTLIGDKRQSHESIACLKLPLSKFMGVSRRFDLIGT---IYGC 432 (538)
Q Consensus 356 ~g~~f~~~~~~~~~~~~~l~l~G~hnv~NalaAia~a~~lgi~~~~~~~~~~~I~~~L~~f~~~~gR~E~v~~---~~g~ 432 (538)
++..|.+...+.. ..++++++|.||++|+++|++++..+|++ .++|+++|++|++++||+|.+.. .++.
T Consensus 268 ~~~~~~~~~~~~~-~~~~l~l~G~hnv~NalaAia~a~~lGi~-------~~~i~~~l~~~~~~~gR~~~~r~~~~~~~~ 339 (479)
T PRK14093 268 DCSAVHADILGHD-VTYKLGMPGRHIAMNSLAVLAAAELAGAD-------LALAALALSQVQPAAGRGVRHTLEVGGGEA 339 (479)
T ss_pred CceEEEEEECCce-EEEEecCCCHHHHHHHHHHHHHHHHcCCC-------HHHHHHHHHhCCCcCCcceEEEeecCCCCE
Confidence 4556766554433 46889999999999999999999999998 89999999999999999998642 2347
Q ss_pred EEEEE-CCCCHHHHHHHHHHHHhhC--CCCeEEEEEccC--CCCchHHHHHHHHHHhc--cCCEEEEeccC
Q 009293 433 HIYDD-FAHHPTEVRAVLQAARQRF--PNKALIAVFQPH--TYSRLVVLKDDFANALS--EADQVVVSAVL 496 (538)
Q Consensus 433 ~ii~D-~Ahnp~s~~a~l~~l~~~~--~~~r~i~V~g~~--~~~r~~~~~~~~~~~~~--~~D~vi~~~~~ 496 (538)
.+||| |||||++++++++++++.. +.+|+++|||++ .+++...++.++++.+. .+|.|+++++.
T Consensus 340 ~iIDDsYahnP~s~~aaL~~l~~~~~~~~~r~i~V~G~m~elg~~~~~~h~~~~~~~~~~~~d~v~~~G~~ 410 (479)
T PRK14093 340 TLIDESYNANPASMAAALGVLGRAPVGPQGRRIAVLGDMLELGPRGPELHRGLAEAIRANAIDLVFCCGPL 410 (479)
T ss_pred EEEECCCCCCHHHHHHHHHHHHhhhccCCCCEEEEECChHHcCcHHHHHHHHHHHHHHHcCCCEEEEEchh
Confidence 78888 9999999999999999864 356899999984 56788888899998765 68999999863
No 25
>PRK00139 murE UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase; Provisional
Probab=100.00 E-value=7.8e-49 Score=421.85 Aligned_cols=365 Identities=23% Similarity=0.261 Sum_probs=265.9
Q ss_pred HhhhccCCceeeecccccccchhhhhhhcCCCceEEEEeechhhHHHHHHHHHhCCCcEEEecCCCChhHHHHHHCCCeE
Q 009293 44 LLFMKKKNSVSVLTNCTFKRNEECIVDFKNRKGWIHFVGIGGSGLSALAKLALKQGFEVSGSDLVWSSYMEGLLEAGANL 123 (538)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~~~~~~~~~~Ga~~ 123 (538)
|+.|+|.++++. ..+.++..|+|+| .-|. .|++.+|.++|||| |++++.++||.+
T Consensus 1 ~~~~~~~~~~~~----------~~i~~i~~DSR~v---~~g~-------lFval~G~~~dGh~-----fi~~A~~~GA~~ 55 (460)
T PRK00139 1 MASMKLRDLLAP----------VEITGLTYDSRKV---KPGD-------LFVALPGHKVDGRD-----FIAQAIANGAAA 55 (460)
T ss_pred CccchHHHHhcC----------CceeEEEeeccCc---CCCC-------EEEEeCCCcCcHHH-----HHHHHHHCCCEE
Confidence 566888887652 2355678888876 3332 44455999999999 999999999999
Q ss_pred EeCCCCCCcCCCCCCCCCCEEEEcCCCCCCCHHHHHHHHCCCCeeeHHHHHHHHhcCCcEEEEeCCCCchHHHHHHHHHH
Q 009293 124 HIGHSVSNIQGNDGSRFPNAVVASSAIPQDNVEILHAKSVGVPIYKRDYWLAKLTEKYNLIAVSGSHGKSTTASMLAYVL 203 (538)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~d~vvvsp~i~~~~~~l~~a~~~gi~vi~~~~~l~~~~~~~~vI~VTGTnGKTTTt~ml~~iL 203 (538)
++.++..... .....++|. ++..+++... ..++++|+++.++||||||||||||++||+++|
T Consensus 56 ~v~~~~~~~~-----~~~~~i~V~----d~~~al~~la---------~~~~~~~~~~~~vI~ITGTnGKTTT~~~l~~iL 117 (460)
T PRK00139 56 VVAEADGEAG-----TGVPVIIVP----DLRKALALLA---------AAFYGHPSDKLKLIGVTGTNGKTTTAYLLAQIL 117 (460)
T ss_pred EEEcCccccC-----CCceEEEEC----CHHHHHHHHH---------HHHhcChhhccEEEEEECCCCchhHHHHHHHHH
Confidence 8876532100 012244553 2333443332 245666766789999999999999999999999
Q ss_pred HHcCCCeEEEeCCCCCCCCCCcc-------------------ccCCCcEEEEeecCcce---eeccccCcEEEEcCCCcc
Q 009293 204 KAMGDDLTAIVGAHVPQFPDGSI-------------------FYGGGKNFVLEADEYDG---CFLGLSPSVAVVTNLDWE 261 (538)
Q Consensus 204 ~~~G~~v~~~~g~~~~~~~~~~~-------------------~~~~~~~~VlE~~~~d~---~~~~~~p~vaVITNI~~D 261 (538)
+.+|+++ .+.|+....++.... ...+.+++|+|+++... ....++|+++|||||++|
T Consensus 118 ~~~g~~~-~~~gn~~~~i~~~~~~~~~~t~~~~~~~~~l~~~~~~~~~~~VlE~~s~~~~~~~l~~~~p~iaViTnI~~d 196 (460)
T PRK00139 118 RLLGEKT-ALIGTLGNGIGGELIPSGLTTPDALDLQRLLAELVDAGVTYAAMEVSSHALDQGRVDGLKFDVAVFTNLSRD 196 (460)
T ss_pred HHcCCCE-EEECCcccccCCeecccCCCCcCHHHHHHHHHHHHHCCCCEEEEEcchhhHhhchhcCCcCCEEEEcCCCcc
Confidence 9999875 555555443332110 13456899999985322 223479999999999999
Q ss_pred ccccCCCHHHHHHHHHHHhhcccCCcEEEEcCCCHHHHHHHHHhhhhcCccccCCcccccCcccccCCCCceEEEeecc-
Q 009293 262 HVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQDTGLKYSGGVVSNQSSDLWGQGHDYKIITYGFS- 340 (538)
Q Consensus 262 Hld~~gs~e~~~~~k~~~~~~~~~~~~~Vln~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~- 340 (538)
|+++|||+|+|+++|.+++...+ +.+|+|.||+....+... ..+|+..
T Consensus 197 Hl~~~gt~e~i~~~K~~i~~~~~--~~~v~n~dd~~~~~~~~~-----------------------------~~~~~~~~ 245 (460)
T PRK00139 197 HLDYHGTMEDYLAAKARLFSELG--LAAVINADDEVGRRLLAL-----------------------------PDAYAVSM 245 (460)
T ss_pred cCCcCCCHHHHHHHHHHHHhcCC--CeEEEEcCcHhHHHHHhh-----------------------------cEEEEecC
Confidence 99999999999999999987542 489999999876554321 2345543
Q ss_pred CCCcceEeeeeecCCCCeEEEEEECCeeeeEEEeCCCchhHHHHHHHHHHHHHHhcCCccCCcccHHHHHHHhccCCCCC
Q 009293 341 SFNDWYAESVCPNVQGGSDYILCERGRPLAQISLQIPGVHNVLNSLAVIATVLTLIGDKRQSHESIACLKLPLSKFMGVS 420 (538)
Q Consensus 341 ~~~d~~~~~i~~~~~~g~~f~~~~~~~~~~~~~l~l~G~hnv~NalaAia~a~~lgi~~~~~~~~~~~I~~~L~~f~~~~ 420 (538)
..+++.+.++.... ++..|.+. ..+.++++|.||++|+++|++++..+|++ .+.|+++|++|++++
T Consensus 246 ~~~~~~~~~~~~~~-~~~~~~~~------~~~~l~l~G~hn~~NalaAia~a~~lgi~-------~~~i~~~L~~~~~~~ 311 (460)
T PRK00139 246 AGADLRATDVEYTD-SGQTFTLV------TEVESPLIGRFNVSNLLAALAALLALGVP-------LEDALAALAKLQGVP 311 (460)
T ss_pred CCCcEEEEEEEEec-CceEEEEE------EEEEecccchhHHHHHHHHHHHHHHcCCC-------HHHHHHHHHhCCCCC
Confidence 34567666554332 34455543 15778999999999999999999999997 799999999999999
Q ss_pred CceEEEeeeCCeEEEEECCCCHHHHHHHHHHHHhhCCCCeEEEEEccCCCCchHHHHHHHHHHh-ccCCEEEEeccCCCC
Q 009293 421 RRFDLIGTIYGCHIYDDFAHHPTEVRAVLQAARQRFPNKALIAVFQPHTYSRLVVLKDDFANAL-SEADQVVVSAVLVFW 499 (538)
Q Consensus 421 gR~E~v~~~~g~~ii~D~Ahnp~s~~a~l~~l~~~~~~~r~i~V~g~~~~~r~~~~~~~~~~~~-~~~D~vi~~~~~~~~ 499 (538)
||||++...+++.+|+||||||+|++++++++++.. .+|+++|||+.. .++......+..++ ..+|.+++++.+++.
T Consensus 312 gR~e~~~~~~~~~iI~DyahNP~s~~aal~~l~~~~-~~r~i~VlG~g~-~k~~~~~~~~~~~~~~~~d~vi~~~~~~~~ 389 (460)
T PRK00139 312 GRMERVDAGQGPLVIVDYAHTPDALEKVLEALRPHA-KGRLICVFGCGG-DRDKGKRPLMGAIAERLADVVIVTSDNPRS 389 (460)
T ss_pred CCcEEEEcCCCCEEEEECCCCHHHHHHHHHHHHhhc-CCcEEEEECCCC-CCchhhhHHHHHHHHHcCCEEEEECCCCCC
Confidence 999999755689999999999999999999998754 368999999733 44444444455543 358999999776555
No 26
>TIGR01143 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase. This family consists of the strictly bacterial MurF gene of peptidoglycan biosynthesis. This enzyme is almost always UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase, but in a few species, MurE adds lysine rather than diaminopimelate. This enzyme acts on the product from MurE activity, and so is also subfamily rather than equivalog. Staphylococcus aureus is an example of species in this MurF protein would differ.
Probab=100.00 E-value=2.7e-47 Score=405.32 Aligned_cols=337 Identities=24% Similarity=0.268 Sum_probs=253.8
Q ss_pred CCCcEEEecCCCChhHHHHHHCCCeEEeCCCCCCcCCCCCCCCCCEEEEcCCCCCCCHHHHHHHHCCCCeeeHHHHHHHH
Q 009293 98 QGFEVSGSDLVWSSYMEGLLEAGANLHIGHSVSNIQGNDGSRFPNAVVASSAIPQDNVEILHAKSVGVPIYKRDYWLAKL 177 (538)
Q Consensus 98 ~G~~v~g~D~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~d~vvvsp~i~~~~~~l~~a~~~gi~vi~~~~~l~~~ 177 (538)
+|.++|||| |++++.++||.+++.+.+.... .....++|. +...++.... ..++.++
T Consensus 16 ~G~~~dGh~-----fi~~A~~~Ga~~~i~~~~~~~~-----~~~~~i~V~----d~~~al~~la---------~~~~~~~ 72 (417)
T TIGR01143 16 KGERFDGHD-----FVEQALAAGAVAVLVDREVGPD-----NGLPQILVD----DTLEALQALA---------SAKRAKF 72 (417)
T ss_pred CCCCCCHHH-----HHHHHHHCCCEEEEEcccccCC-----CCCCEEEEC----CHHHHHHHHH---------HHHHhhC
Confidence 999999999 9999999999998876431000 012244443 2333333331 1344444
Q ss_pred hcCCcEEEEeCCCCchHHHHHHHHHHHHcCCCeEEEeCCCCCCCCCCc---cccCCCcEEEEeec-Cc----ceeecccc
Q 009293 178 TEKYNLIAVSGSHGKSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGS---IFYGGGKNFVLEAD-EY----DGCFLGLS 249 (538)
Q Consensus 178 ~~~~~vI~VTGTnGKTTTt~ml~~iL~~~G~~v~~~~g~~~~~~~~~~---~~~~~~~~~VlE~~-~~----d~~~~~~~ 249 (538)
..++||||||||||||++||+++|+..|+ +..+.|+.+..++.+. ....+.+++|+|++ +. +.....++
T Consensus 73 --~~~vI~VTGTnGKTTt~~ll~~iL~~~g~-~~~t~gn~n~~ig~p~~~l~~~~~~~~~VlE~g~s~~g~~~~~~~~~~ 149 (417)
T TIGR01143 73 --SGKVIGITGSSGKTTTKEMLAAILSHKYK-VFATPGNFNNEIGLPLTLLRAPGDHDYAVLEMGASHPGEIAYLAEIAK 149 (417)
T ss_pred --CCCEEEEcCCCchhHHHHHHHHHHhccCc-EecCCCcCCCccchhHHHhcCCCCCeEEEEEeCCCCCCcHHHHhCccC
Confidence 46899999999999999999999999986 4445555443333210 11235689999985 22 22344689
Q ss_pred CcEEEEcCCCccccccCCCHHHHHHHHHHHhhcccCCcEEEEcCCCHHHHHHHHHhhhhcCccccCCcccccCcccccCC
Q 009293 250 PSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQDTGLKYSGGVVSNQSSDLWGQG 329 (538)
Q Consensus 250 p~vaVITNI~~DHld~~gs~e~~~~~k~~~~~~~~~~~~~Vln~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (538)
|+++|||||++||+|+|||+|+|+++|.+++..+++++.+|+|.||+....+.....
T Consensus 150 p~vaviTNi~~dHld~~gs~e~~~~aK~~l~~~~~~~~~~vln~Dd~~~~~~~~~~~----------------------- 206 (417)
T TIGR01143 150 PDIAVITNIGPAHLEGFGSLEGIAEAKGEILQGLKENGIAVINADDPAFAKFAKRLP----------------------- 206 (417)
T ss_pred CCEEEEcCCcHHHhhhcCCHHHHHHHHHHHHcccCCCCEEEEeCCcHHHHHHHHhcc-----------------------
Confidence 999999999999999999999999999999998888899999999998766544321
Q ss_pred CCceEEEeeccCCCcceEeeeeecCCCC-eEEEEEECCeeeeEEEeCCCchhHHHHHHHHHHHHHHhcCCccCCcccHHH
Q 009293 330 HDYKIITYGFSSFNDWYAESVCPNVQGG-SDYILCERGRPLAQISLQIPGVHNVLNSLAVIATVLTLIGDKRQSHESIAC 408 (538)
Q Consensus 330 ~~~~~~~~g~~~~~d~~~~~i~~~~~~g-~~f~~~~~~~~~~~~~l~l~G~hnv~NalaAia~a~~lgi~~~~~~~~~~~ 408 (538)
+.++++|+... +|+++.++.... .+ ..|.+..++.. .++.++++|.||++|+++|++++..+|++ +++
T Consensus 207 -~~~~~~~g~~~-~~~~~~~i~~~~-~~~~~~~~~~~~~~-~~~~~~l~G~hn~~N~laAia~~~~lGi~-------~~~ 275 (417)
T TIGR01143 207 -NKAILSFGFEG-GDFSAADISYSA-LGSTGFTLVAPGGE-FEVSLPLLGRHNVMNALAAAALALELGIP-------LEE 275 (417)
T ss_pred -CCcEEEECCCC-CcEEEEEEEEcC-CCCEEEEEEeCCce-EEEEccCCcHHHHHHHHHHHHHHHHcCCC-------HHH
Confidence 13567887653 577766665442 34 56777655433 46888999999999999999999999997 899
Q ss_pred HHHHhccCCCCCCceEEEeeeCCeEEEEE-CCCCHHHHHHHHHHHHhhCCCCeEEEEEccCC--CCchHHHHHHHHHHh-
Q 009293 409 LKLPLSKFMGVSRRFDLIGTIYGCHIYDD-FAHHPTEVRAVLQAARQRFPNKALIAVFQPHT--YSRLVVLKDDFANAL- 484 (538)
Q Consensus 409 I~~~L~~f~~~~gR~E~v~~~~g~~ii~D-~Ahnp~s~~a~l~~l~~~~~~~r~i~V~g~~~--~~r~~~~~~~~~~~~- 484 (538)
|+++|++|+++||||| +...+++.+|+| |||||+|++++++++++. + +|+++|+|+.. ..++..++..+.+.+
T Consensus 276 i~~~l~~~~~~~gR~e-~~~~~~~~vidDsya~np~s~~~al~~l~~~-~-~r~i~VlG~~~e~G~~~~~~~~~l~~~~~ 352 (417)
T TIGR01143 276 IAEGLAELKLVKGRFE-IQTKNGLTLIDDTYNANPDSMRAALDALARF-P-GKKILVLGDMAELGEYSEELHAEVGRYAN 352 (417)
T ss_pred HHHHHHhCCCCCCcee-EEcCCCcEEEEcCCCCCHHHHHHHHHHHHhC-C-CCEEEEEcCchhcChHHHHHHHHHHHHHH
Confidence 9999999999999999 444678999999 999999999999999875 4 58899999763 366667777888855
Q ss_pred cc-CCEEEEeccCC
Q 009293 485 SE-ADQVVVSAVLV 497 (538)
Q Consensus 485 ~~-~D~vi~~~~~~ 497 (538)
+. +|.||+++...
T Consensus 353 ~~~~d~vi~~g~~~ 366 (417)
T TIGR01143 353 SLGIDLVFLVGEEA 366 (417)
T ss_pred HcCCCEEEEECHHH
Confidence 44 59999998754
No 27
>TIGR01085 murE UDP-N-acetylmuramyl-tripeptide synthetase. A close homolog, scoring just below the trusted cutoff, is found (with introns) in Arabidopsis thaliana. Its role is unknown.
Probab=100.00 E-value=5.8e-46 Score=400.45 Aligned_cols=364 Identities=19% Similarity=0.222 Sum_probs=254.8
Q ss_pred hhhhcCCCceEEEEeechhhHHHHHHHHHhCCCcEEEecCCCChhHHHHHHCCCeEEeCCCCCCcCCCCCCCCCCEEEEc
Q 009293 68 IVDFKNRKGWIHFVGIGGSGLSALAKLALKQGFEVSGSDLVWSSYMEGLLEAGANLHIGHSVSNIQGNDGSRFPNAVVAS 147 (538)
Q Consensus 68 ~~~~~~~~~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~d~vvvs 147 (538)
++++..|+|.| .-|. .|++.+|.++|||+ |++++.++||.+++.+++..... .....++|.
T Consensus 4 ~~~v~~dsr~v---~~g~-------lFval~G~~~dgh~-----fi~~A~~~GA~~~i~~~~~~~~~----~~~~~~~v~ 64 (464)
T TIGR01085 4 VTGLTLDSREV---KPGD-------LFVAIKGTHVDGHD-----FIHDAIANGAVAVVVERDVDFYV----APVPVIIVP 64 (464)
T ss_pred eeEEEecCcCC---CCCC-------EEEEecCCcCCHHH-----HHHHHHHCCCeEEEEcccccccc----CCceEEEEC
Confidence 34566777766 3332 34445999999999 99999999999998865321000 011244443
Q ss_pred CCCCCCCHHHHHHHHCCCCeeeHHHHHHHHhcCCcEEEEeCCCCchHHHHHHHHHHHHcCCCeEEEeCCCCCCCCC----
Q 009293 148 SAIPQDNVEILHAKSVGVPIYKRDYWLAKLTEKYNLIAVSGSHGKSTTASMLAYVLKAMGDDLTAIVGAHVPQFPD---- 223 (538)
Q Consensus 148 p~i~~~~~~l~~a~~~gi~vi~~~~~l~~~~~~~~vI~VTGTnGKTTTt~ml~~iL~~~G~~v~~~~g~~~~~~~~---- 223 (538)
+...+++... ..++.+|+.+.++||||||||||||++||+++|+.+|++++.. ++....++.
T Consensus 65 ----d~~~al~~la---------~~~~~~~~~~~~vI~ITGTnGKTTT~~ml~~iL~~~g~~~~~~-~t~g~~~~~n~~i 130 (464)
T TIGR01085 65 ----DLRHALSSLA---------AAFYGHPSKKLKVIGVTGTNGKTTTTSLIAQLLRLLGKKTGLI-GTIGYRLGGNDLI 130 (464)
T ss_pred ----CHHHHHHHHH---------HHHhCChhHccEEEEEECCCCcHhHHHHHHHHHHHcCCCEEEE-CccceeECCeeee
Confidence 2223333321 1345555557899999999999999999999999999885433 222111110
Q ss_pred --C--c--------------cccCCCcEEEEeecCcce---eeccccCcEEEEcCCCccccccCCCHHHHHHHHHHHhhc
Q 009293 224 --G--S--------------IFYGGGKNFVLEADEYDG---CFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQ 282 (538)
Q Consensus 224 --~--~--------------~~~~~~~~~VlE~~~~d~---~~~~~~p~vaVITNI~~DHld~~gs~e~~~~~k~~~~~~ 282 (538)
. . ....+.+++|+|+++... ....++|+++|||||++||+++|||+|.|+++|.++++.
T Consensus 131 g~p~~~tt~~~~~~~~~l~~~~~~~~~~~VlE~g~~~~~~~~l~~~~p~iaviTnI~~dHl~~~gs~e~i~~~K~~i~~~ 210 (464)
T TIGR01085 131 KNPAALTTPEALTLQSTLAEMVEAGAQYAVMEVSSHALAQGRVRGVRFDAAVFTNLSRDHLDFHGTMENYFAAKASLFTE 210 (464)
T ss_pred cCcccCCCCCHHHHHHHHHHHHHCCCCEEEEEecHHHHhhCCccCceeCEEEEccCCCCCCcccCCHHHHHHHHHHHhcc
Confidence 0 0 102457899999985321 123479999999999999999999999999999999998
Q ss_pred ccCCcEEEEcCCCHHHHHHHHHhhhhcCccccCCcccccCcccccCCCCceEEEeecc----CCCcceEeeeeecCCCCe
Q 009293 283 IRVGGHLVICGDSQCARSLLDQIKQDTGLKYSGGVVSNQSSDLWGQGHDYKIITYGFS----SFNDWYAESVCPNVQGGS 358 (538)
Q Consensus 283 ~~~~~~~Vln~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~----~~~d~~~~~i~~~~~~g~ 358 (538)
+++++.+|+|.||+....+...... ...+.+... ..++++..++.... ++.
T Consensus 211 ~~~~g~~v~n~dd~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 265 (464)
T TIGR01085 211 LGLKRFAVINLDDEYGAQFVKRLPK------------------------DITVSAITQPADGRAQDIKITDSGYSF-EGQ 265 (464)
T ss_pred ccCCCeEEEEcCCHHHHHHHHhcCC------------------------CeEEEEecCCCccccccEEEEEEEEec-Cce
Confidence 8778899999999987665543210 011111111 12355554444322 345
Q ss_pred EEEEEECCeeeeEEEeCCCchhHHHHHHHHHHHHHHhc-CCccCCcccHHHHHHHhccCCCCCCceEEEeeeCCeEEEEE
Q 009293 359 DYILCERGRPLAQISLQIPGVHNVLNSLAVIATVLTLI-GDKRQSHESIACLKLPLSKFMGVSRRFDLIGTIYGCHIYDD 437 (538)
Q Consensus 359 ~f~~~~~~~~~~~~~l~l~G~hnv~NalaAia~a~~lg-i~~~~~~~~~~~I~~~L~~f~~~~gR~E~v~~~~g~~ii~D 437 (538)
.|.+..+++. ..+.++++|.||++|+++|++++..+| ++ .+.|+++|++|++++||||++...+++.+|+|
T Consensus 266 ~~~~~~~~~~-~~~~l~l~G~hn~~NalaAia~a~~lg~i~-------~e~i~~~L~~~~~~~gR~e~~~~~~g~~vi~D 337 (464)
T TIGR01085 266 QFTFETPAGE-GHLHTPLIGRFNVYNLLAALATLLHLGGID-------LEDIVAALEKFRGVPGRMELVDGGQKFLVIVD 337 (464)
T ss_pred EEEEEeCCce-EEEEecCccHhHHHHHHHHHHHHHHcCCCC-------HHHHHHHHHhCCCCCCCcEEEEcCCCCEEEEE
Confidence 6776654433 468899999999999999999999998 87 79999999999999999999975467999999
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCeEEEEEccCCCCchHHHHHHHHHHh-ccCCEEEEeccCCCC
Q 009293 438 FAHHPTEVRAVLQAARQRFPNKALIAVFQPHTYSRLVVLKDDFANAL-SEADQVVVSAVLVFW 499 (538)
Q Consensus 438 ~Ahnp~s~~a~l~~l~~~~~~~r~i~V~g~~~~~r~~~~~~~~~~~~-~~~D~vi~~~~~~~~ 499 (538)
|||||+||+++++++++. +.+|+++|+|... .+.......+..+. ..+|.+++++.+++.
T Consensus 338 y~~NP~s~~aal~~l~~~-~~~r~i~VlGlg~-~~~~~~~~~~~~~~~~~~d~vi~~g~~~~~ 398 (464)
T TIGR01085 338 YAHTPDALEKALRTLRKH-KDGRLIVVFGCGG-DRDRGKRPLMGAIAEQLADLVILTSDNPRG 398 (464)
T ss_pred CCCCHHHHHHHHHHHHhh-CCCcEEEEECCCC-CCCcchhHHHHHHHHhcCCEEEEeCCCcCC
Confidence 999999999999999874 4468899999543 33333223333333 357999999876544
No 28
>PRK11929 putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase; Provisional
Probab=100.00 E-value=2.6e-46 Score=435.52 Aligned_cols=368 Identities=21% Similarity=0.228 Sum_probs=269.0
Q ss_pred hhhhhhcCCCceEEEEeechhhHHHHHHHHHhCCCcEEEecCCCChhHHHHHHCCCeEEeCCCCC-C--cCCCCCCCCCC
Q 009293 66 ECIVDFKNRKGWIHFVGIGGSGLSALAKLALKQGFEVSGSDLVWSSYMEGLLEAGANLHIGHSVS-N--IQGNDGSRFPN 142 (538)
Q Consensus 66 ~~~~~~~~~~~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~~~~~~~~~~Ga~~~~~~~~~-~--~~~~~~~~~~d 142 (538)
.+++.+..|+|+| .-|. .|++.+|.++|||| |++++.++||.+++.++.. . .. ....
T Consensus 27 ~~~~~i~~DSR~v---~~g~-------lFval~G~~~dGh~-----fi~~A~~~GA~~~v~~~~~~~~~~~-----~~~~ 86 (958)
T PRK11929 27 AATADLRLDSREV---QPGD-------LFVACRGAASDGRA-----FIDQALARGAAAVLVEAEGEDQVAA-----ADAL 86 (958)
T ss_pred cccceeeeeccCC---CCCC-------EEEEeCCCCCCHHH-----HHHHHHHcCCEEEEEeccccccccC-----CCCe
Confidence 4566778888877 3332 34445999999999 9999999999998876431 1 10 0112
Q ss_pred EEEEcCCCCCCCHHHHHHHHCCCCeeeHHHHHHHHhcCCcEEEEeCCCCchHHHHHHHHHHHHcCCCeEEEeCCCCCCCC
Q 009293 143 AVVASSAIPQDNVEILHAKSVGVPIYKRDYWLAKLTEKYNLIAVSGSHGKSTTASMLAYVLKAMGDDLTAIVGAHVPQFP 222 (538)
Q Consensus 143 ~vvvsp~i~~~~~~l~~a~~~gi~vi~~~~~l~~~~~~~~vI~VTGTnGKTTTt~ml~~iL~~~G~~v~~~~g~~~~~~~ 222 (538)
.++|. +...++.... ..++++|+.+.++||||||||||||++||+++|+.+|++++ +.|+....+.
T Consensus 87 ~i~V~----d~~~al~~la---------~~~~~~p~~~~~vI~ITGTnGKTTT~~~l~~iL~~~g~~~~-~~g~~~~~i~ 152 (958)
T PRK11929 87 VLPVA----DLRKALGELA---------ARWYGRPSEQLSLVAVTGTNGKTSCAQLLAQLLTRLGKPCG-SIGTLGARLD 152 (958)
T ss_pred EEEEC----CHHHHHHHHH---------HHHHhChhhccEEEEEECCCccHHHHHHHHHHHHHcCCCEE-EECCccccCC
Confidence 34442 2333333331 13677787788999999999999999999999999999864 4555433221
Q ss_pred C-----Cc--------------cccCCCcEEEEeecCcce---eeccccCcEEEEcCCCccccccCCCHHHHHHHHHHHh
Q 009293 223 D-----GS--------------IFYGGGKNFVLEADEYDG---CFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFL 280 (538)
Q Consensus 223 ~-----~~--------------~~~~~~~~~VlE~~~~d~---~~~~~~p~vaVITNI~~DHld~~gs~e~~~~~k~~~~ 280 (538)
. .. +...+.+++|+|+++... ....++|+++|||||++||+|+|||+|+|+++|.+++
T Consensus 153 ~~~i~~~~t~~~~~~~~~~l~~~~~~~~~~~VlE~ss~~l~~~rl~~~~p~iaviTnI~~dHl~~~gt~e~i~~~K~~i~ 232 (958)
T PRK11929 153 GRLIPGSLTTPDAIILHRILARMRAAGADAVAMEASSHGLEQGRLDGLRIAVAGFTNLTRDHLDYHGTMQDYEEAKAALF 232 (958)
T ss_pred CeeeecCCCCCCHHHHHHHHHHHHHCCCCEEEEEeccchHhhCcccccccCEEEEeCCCccccccCCCHHHHHHHHHHHh
Confidence 1 00 012356899999975322 2234789999999999999999999999999999999
Q ss_pred hcccCCcEEEEcCCCHHHHHHHHHhhhhcCccccCCcccccCcccccCCCCceEEEeeccCCCcceEeeeeecCCCCeEE
Q 009293 281 KQIRVGGHLVICGDSQCARSLLDQIKQDTGLKYSGGVVSNQSSDLWGQGHDYKIITYGFSSFNDWYAESVCPNVQGGSDY 360 (538)
Q Consensus 281 ~~~~~~~~~Vln~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~d~~~~~i~~~~~~g~~f 360 (538)
..+++++.+|+|.||+....+....+. ...+.+++....+|+.+.++.... .+..|
T Consensus 233 ~~~~~~~~~Vln~dd~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~d~~~~~~~~~~-~~~~~ 288 (958)
T PRK11929 233 SKLPGLGAAVINADDPAAARLLAALPR-----------------------GLKVGYSPQNAGADVQARDLRATA-HGQVF 288 (958)
T ss_pred cCCccCCeEEEECCCHHHHHHHHHcCC-----------------------CceEEEEeeCCCccEEEEEEEEcC-CceEE
Confidence 877788999999999987776543211 123445554434577776665432 35567
Q ss_pred EEEECCeeeeEEEeCCCchhHHHHHHHHHHHHHHhcCCccCCcccHHHHHHHhccCCCCCCceEEEe---eeCCeEEEEE
Q 009293 361 ILCERGRPLAQISLQIPGVHNVLNSLAVIATVLTLIGDKRQSHESIACLKLPLSKFMGVSRRFDLIG---TIYGCHIYDD 437 (538)
Q Consensus 361 ~~~~~~~~~~~~~l~l~G~hnv~NalaAia~a~~lgi~~~~~~~~~~~I~~~L~~f~~~~gR~E~v~---~~~g~~ii~D 437 (538)
.+..+++. ..+.++++|.||++|+++|++++..+|++ .++|+++|++|+++|||||++. ..+++.+|+|
T Consensus 289 ~~~~~~~~-~~~~l~l~G~hnv~NalaAia~a~~lgi~-------~~~I~~~L~~~~~~~gR~e~i~~~~~~~~~~vi~D 360 (958)
T PRK11929 289 TLATPDGS-YQLVTRLLGRFNVSNLLLVAAALKKLGLP-------LAQIARALAAVSPVPGRMERVGPTAGAQGPLVVVD 360 (958)
T ss_pred EEEeCCce-EEEEecCccHhhHHHHHHHHHHHHHcCCC-------HHHHHHHHhcCCCCCCCcEEeccccCCCCCEEEEE
Confidence 77654433 46789999999999999999999999997 7999999999999999999983 3468899999
Q ss_pred CCCCHHHHHHHHHHHHhh--CCCCeEEEEEccCCCCchHHHHHHHHHHh-ccCCEEEEeccCCCCc
Q 009293 438 FAHHPTEVRAVLQAARQR--FPNKALIAVFQPHTYSRLVVLKDDFANAL-SEADQVVVSAVLVFWL 500 (538)
Q Consensus 438 ~Ahnp~s~~a~l~~l~~~--~~~~r~i~V~g~~~~~r~~~~~~~~~~~~-~~~D~vi~~~~~~~~~ 500 (538)
|||||+|++++++++++. ++.+|+++|||+.. .|+++....+..+. ..+|.|++++.+++++
T Consensus 361 yahnP~s~~a~l~~l~~~~~~~~~r~i~V~g~g~-~r~~~~~~~~~~~~~~~~d~vi~t~~~pr~e 425 (958)
T PRK11929 361 YAHTPDALAKALTALRPVAQARNGRLVCVFGCGG-DRDKGKRPEMGRIAAELADRVVVTSDNPRSE 425 (958)
T ss_pred CCCCHHHHHHHHHHHHHhcccCCCcEEEEECCCC-CCCcchhHHHHHHHHHhCCEEEEcCCCCCCC
Confidence 999999999999999853 23468899999643 45555444555543 4689999998766553
No 29
>COG0770 MurF UDP-N-acetylmuramyl pentapeptide synthase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=5.4e-46 Score=391.46 Aligned_cols=380 Identities=22% Similarity=0.277 Sum_probs=293.0
Q ss_pred hccCCceeeecccccccchhhhhhhcCCCceEEEEeechhhHHHHHHHHHhCCCcEEEecCCCChhHHHHHHCCCeEEeC
Q 009293 47 MKKKNSVSVLTNCTFKRNEECIVDFKNRKGWIHFVGIGGSGLSALAKLALKQGFEVSGSDLVWSSYMEGLLEAGANLHIG 126 (538)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~~~~~~~~~~Ga~~~~~ 126 (538)
++++++...+.+.........+..+..|+|.| +-|. .|++.+|.++|||| |+.++.+.|+.+.+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~v~~Dsr~v---~~g~-------lF~al~G~~~Dgh~-----fi~~A~~~GA~a~~v 67 (451)
T COG0770 3 LTLDELADILGGALVGADPVVVSGVSIDSRKV---KPGD-------LFVALKGERFDGHD-----FIEQALAAGAAAVLV 67 (451)
T ss_pred ccHHHHHHHhCCccccCcccceeeEEeecccC---CCCc-------eeEEccCccccccc-----hHHHHHhcCCEEEEE
Confidence 45666666666665443335667888999887 5553 77788999999999 999999999999887
Q ss_pred CCCCCcCCCCCCCCC-CEEEEcCCCCCCCHHHHHHHHCCCCeeeHHHHHHHHhcCCcEEEEeCCCCchHHHHHHHHHHHH
Q 009293 127 HSVSNIQGNDGSRFP-NAVVASSAIPQDNVEILHAKSVGVPIYKRDYWLAKLTEKYNLIAVSGSHGKSTTASMLAYVLKA 205 (538)
Q Consensus 127 ~~~~~~~~~~~~~~~-d~vvvsp~i~~~~~~l~~a~~~gi~vi~~~~~l~~~~~~~~vI~VTGTnGKTTTt~ml~~iL~~ 205 (538)
.++..-.. .+ ..+++. +...++++.. .++. -..+.++|+||||+|||||+.|++++|+.
T Consensus 68 ~r~~~~~~-----~~~~~~~V~----d~~~al~~la----------~~~~-~~~~~kvIaITGS~GKTTTKe~la~iL~~ 127 (451)
T COG0770 68 ARPVLPPA-----IPLVVLLVL----DTLEALGKLA----------KAYR-QKFNAKVIAITGSNGKTTTKEMLAAILST 127 (451)
T ss_pred ecCcCCcc-----cccceEEeH----HHHHHHHHHH----------HHHH-HhcCCcEEEEeCCCCcHHHHHHHHHHHhh
Confidence 55432110 01 022222 2222332221 1122 22367899999999999999999999999
Q ss_pred cCCCeEEEeCCCCCCCCCCc---cccCCCcEEEEeec-----CcceeeccccCcEEEEcCCCccccccCCCHHHHHHHHH
Q 009293 206 MGDDLTAIVGAHVPQFPDGS---IFYGGGKNFVLEAD-----EYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFR 277 (538)
Q Consensus 206 ~G~~v~~~~g~~~~~~~~~~---~~~~~~~~~VlE~~-----~~d~~~~~~~p~vaVITNI~~DHld~~gs~e~~~~~k~ 277 (538)
.| ++..+.|+.++.++.+. ....+++++|+|++ ++......++|+++|||||+.+|+++|||.|.++++|.
T Consensus 128 ~~-~v~~t~gn~Nn~iGlPltll~~~~~~e~~VlEmG~~~~GeI~~l~~i~~P~iavItnIg~aHle~fgs~e~Ia~aK~ 206 (451)
T COG0770 128 KG-KVHATPGNFNNEIGLPLTLLRLPADTEYAVLEMGMNHPGEIAELSEIARPDIAVITNIGEAHLEGFGSREGIAEAKA 206 (451)
T ss_pred cC-eEecCCCccCccccchhHHHhCCCcccEEEEEcCCCCCCcHHHHhcccCCCEEEEcChhHHHHHhcCCHHHHHHHHH
Confidence 86 56778888887766542 12356889999974 45555667899999999999999999999999999999
Q ss_pred HHhhcccCCcEEEEcCCCHHHHHHHHHhhhhcCccccCCcccccCcccccCCCCceEEEeeccCCCcceEeeeeecCCCC
Q 009293 278 RFLKQIRVGGHLVICGDSQCARSLLDQIKQDTGLKYSGGVVSNQSSDLWGQGHDYKIITYGFSSFNDWYAESVCPNVQGG 357 (538)
Q Consensus 278 ~~~~~~~~~~~~Vln~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~d~~~~~i~~~~~~g 357 (538)
+++..+++++.+|+|.|++.......... ..++++||.....|+++.++.... .+
T Consensus 207 Ei~~~~~~~g~ai~n~d~~~~~~~~~~~~------------------------~~~v~~fg~~~~~d~~~~~i~~~~-~~ 261 (451)
T COG0770 207 EILAGLRPEGIAILNADNPLLKNWAAKIG------------------------NAKVLSFGLNNGGDFRATNIHLDE-EG 261 (451)
T ss_pred HHHhccCCCcEEEEECccHHHHHHHhhcC------------------------CCcEEEEcCCCCCceeeEEEEEcC-Cc
Confidence 99999999999999999998544433211 257889987655789999888875 45
Q ss_pred eEEEEEECCeeeeEEEeCCCchhHHHHHHHHHHHHHHhcCCccCCcccHHHHHHHhccCCCCCCceEEEeeeCCeEEEEE
Q 009293 358 SDYILCERGRPLAQISLQIPGVHNVLNSLAVIATVLTLIGDKRQSHESIACLKLPLSKFMGVSRRFDLIGTIYGCHIYDD 437 (538)
Q Consensus 358 ~~f~~~~~~~~~~~~~l~l~G~hnv~NalaAia~a~~lgi~~~~~~~~~~~I~~~L~~f~~~~gR~E~v~~~~g~~ii~D 437 (538)
.+|++...+.. ..+.++++|+||+.|+++|+++|+.+|++ .++|+++|+.+++++||+|.+...+|.++|+|
T Consensus 262 ~~f~~~~~~~~-~~~~l~~~G~hn~~NalaA~a~a~~lG~~-------~e~i~~~L~~~~~~~gR~~~~~~~~g~~iIdD 333 (451)
T COG0770 262 SSFTLDIEGGE-AEFELPLPGRHNVTNALAAAALALELGLD-------LEEIAAGLKELKPVKGRLEVILLANGKTLIDD 333 (451)
T ss_pred eEEEEEecCce-EEEEecCCcHhHHHHHHHHHHHHHHcCCC-------HHHHHHHHHhcCCCCccceeEecCCCcEEEEc
Confidence 89999877654 47999999999999999999999999998 89999999999999999995555688999999
Q ss_pred -CCCCHHHHHHHHHHHHhhCCCCeEEEEEccCCC--CchHHHHHHHHH-Hhc-cCCEEEEeccC
Q 009293 438 -FAHHPTEVRAVLQAARQRFPNKALIAVFQPHTY--SRLVVLKDDFAN-ALS-EADQVVVSAVL 496 (538)
Q Consensus 438 -~Ahnp~s~~a~l~~l~~~~~~~r~i~V~g~~~~--~r~~~~~~~~~~-~~~-~~D~vi~~~~~ 496 (538)
||.||+||.++++.+... ++++.++|+|.+.. ......+.++++ +.+ ..|.+|++...
T Consensus 334 ~YNAnp~sm~aai~~l~~~-~~~~~i~VlGdM~ELG~~s~~~H~~v~~~~~~~~~d~v~~~G~~ 396 (451)
T COG0770 334 SYNANPDSMRAALDLLAAL-PGRKGIAVLGDMLELGEESEELHEEVGEYAVEAGIDLVFLVGEL 396 (451)
T ss_pred CCCCCHHHHHHHHHHHhhC-ccCCcEEEeCChhhhCccHHHHHHHHHHHHHhcCceEEEEEccc
Confidence 899999999999999985 44444899997642 334566777777 334 47999999974
No 30
>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=4.5e-45 Score=384.03 Aligned_cols=330 Identities=17% Similarity=0.168 Sum_probs=240.8
Q ss_pred eEEEEeechhhHHHHHHHHHhCCCcEEEecCCCChhHHHHHHCCCeEEeCCCCCCcCCCCCCCCCCEEEEcCCCCCCCHH
Q 009293 77 WIHFVGIGGSGLSALAKLALKQGFEVSGSDLVWSSYMEGLLEAGANLHIGHSVSNIQGNDGSRFPNAVVASSAIPQDNVE 156 (538)
Q Consensus 77 ~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~d~vvvsp~i~~~~~~ 156 (538)
+|+|+|+|+||| ++|++|+ +|++|.++|....+.. +.+.|+.+ +. ...+. ...+|+||+||+||+++|+
T Consensus 2 ~v~v~G~G~sG~-a~a~~L~-~G~~V~~~D~~~~~~~--~~~~gi~~-~~--~~~~~----~~~~d~vv~sp~i~~~~~~ 70 (401)
T PRK03815 2 KISLFGYGKTTK-ALAKFLK-KFGGVDIFDDKFTESH--KDEEGNLL-LP--SNDFD----PNKSDLEIPSPGIPPSHPL 70 (401)
T ss_pred eEEEEeECHHHH-HHHHHHh-CCCeEEEEcCCCCccc--hhhcCCEE-ec--HHHcC----cCCCCEEEECCCCCCCCHH
Confidence 489999999999 5689999 9999999995432211 22347766 32 11110 0147999999999999999
Q ss_pred HHHHHHCCCCeeeHHHHHHHHhcCCcEEEEeCCCCchHHHHHHHHHHHHcCCCeEEEeCCCCCCCCCCccccCCCcEEEE
Q 009293 157 ILHAKSVGVPIYKRDYWLAKLTEKYNLIAVSGSHGKSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVL 236 (538)
Q Consensus 157 l~~a~~~gi~vi~~~~~l~~~~~~~~vI~VTGTnGKTTTt~ml~~iL~~~G~~v~~~~g~~~~~~~~~~~~~~~~~~~Vl 236 (538)
+++|++ ++++.+++.+.. .++|+||||||||||++|++++|+.+|..+++.+|..... ..++.+++|+
T Consensus 71 ~~~a~~----i~~~~e~~~~~~--~~~i~ITGT~GKTTTt~ml~~iL~~~g~~~~gniG~p~~~------~~~~~~~~V~ 138 (401)
T PRK03815 71 IQKAKN----LISEYDYFYDVM--PFSIWISGTNGKTTTTQMTTHLLEDFGAVSGGNIGTPLAE------LDKNAKIWVL 138 (401)
T ss_pred HHHHHH----HhhHHHHHHHhc--CCEEEEECCCcHHHHHHHHHHHHHHCCCcEEEEecHhHHh------cCCCCCEEEE
Confidence 999987 799999987764 3599999999999999999999999996655555543322 1245689999
Q ss_pred eecCcce-eeccccCcEEEEcCCCccccccCCCHHHHHHHHHHHhhcccCCcEEEEcCCCHHHHHHHHHhhhhcCccccC
Q 009293 237 EADEYDG-CFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQDTGLKYSG 315 (538)
Q Consensus 237 E~~~~d~-~~~~~~p~vaVITNI~~DHld~~gs~e~~~~~k~~~~~~~~~~~~~Vln~dd~~~~~~~~~~~~~~~~~~~~ 315 (538)
|+++++. ....++|+++|||||++||+|+|+|+|+|.++|.++++.+++++.+|+|.||+... .
T Consensus 139 E~ss~~~~~~~~~~p~iavitNi~~dHld~~~s~e~~~~~k~~i~~~~~~~~~~v~n~dd~~~~----~----------- 203 (401)
T PRK03815 139 ETSSFTLHYTNKAKPNIYLLLPITPDHLSWHGSFENYVKAKLKPLKRMNEGDVAILPKKFKNTP----T----------- 203 (401)
T ss_pred ECChHHhhCCccCCCcEEEEcCCcccchhhcCCHHHHHHHHHHHHhCCCcCCEEEEeccccccc----c-----------
Confidence 9988863 33356999999999999999999999999999999999988899999999998521 0
Q ss_pred CcccccCcccccCCCCceEEEeeccCCCcceEeeeeecCCCCeEEEEEECCeeeeEEEeCCCchhHHHHHHHHHHHHHHh
Q 009293 316 GVVSNQSSDLWGQGHDYKIITYGFSSFNDWYAESVCPNVQGGSDYILCERGRPLAQISLQIPGVHNVLNSLAVIATVLTL 395 (538)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~d~~~~~i~~~~~~g~~f~~~~~~~~~~~~~l~l~G~hnv~NalaAia~a~~l 395 (538)
..++++|+.. .++.. .+.+... .+.+.+. +++|+++|++++..+
T Consensus 204 ---------------~~~~~~fg~~--~~~~~-----------~~~~~~~-------~~~~~~~-~~~NalaA~a~a~~~ 247 (401)
T PRK03815 204 ---------------KAQKIFYEDE--EDLAE-----------KFGIDSE-------KINFKGP-FLLDALLALAVYKIL 247 (401)
T ss_pred ---------------CCcEEEEecC--Ccccc-----------ceeEehH-------hcCCchH-HHHHHHHHHHHHHHh
Confidence 1355677632 12210 0111110 1223454 499999999999999
Q ss_pred cCCccCCcccHHHHHHHhccCCCCCCceEEEeeeCCeEEEEE-CCCCHHHHHHHHHHHHhhCCCCeEEEEEccCCCCchH
Q 009293 396 IGDKRQSHESIACLKLPLSKFMGVSRRFDLIGTIYGCHIYDD-FAHHPTEVRAVLQAARQRFPNKALIAVFQPHTYSRLV 474 (538)
Q Consensus 396 gi~~~~~~~~~~~I~~~L~~f~~~~gR~E~v~~~~g~~ii~D-~Ahnp~s~~a~l~~l~~~~~~~r~i~V~g~~~~~r~~ 474 (538)
|++ .+.++|++|+|++||||++...+|+.+||| |+.||+++.++++. ++++|+++|+|... +..
T Consensus 248 G~~---------~~~~~L~~f~~~~~R~e~~~~~~gv~~idDs~~tn~~a~~~al~~----~~~~~ii~IlGG~~--k~~ 312 (401)
T PRK03815 248 FDE---------LDYERLNAFKIGKHKLEEFRDKQGRLWVDDSKATNVDATLQALKR----YKDKKIHLILGGDD--KGV 312 (401)
T ss_pred CcH---------HHHHHHHhCCCCCceEEEEEEECCEEEEECCCCCCHHHHHHHHHh----CCCCCEEEEECCCC--CCC
Confidence 942 344789999999999999976789999999 59999877766654 34457899999532 222
Q ss_pred HHHHHHHHHhccCC-EEEEeccC
Q 009293 475 VLKDDFANALSEAD-QVVVSAVL 496 (538)
Q Consensus 475 ~~~~~~~~~~~~~D-~vi~~~~~ 496 (538)
++ .++.+.+...+ .|++.+..
T Consensus 313 ~~-~~l~~~~~~~~~~v~~~G~~ 334 (401)
T PRK03815 313 DL-TPLFEFMKNLNIELYAIGSN 334 (401)
T ss_pred CH-HHHHHHHHhhCcEEEEECCC
Confidence 22 35666554333 37777653
No 31
>PRK14022 UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase; Provisional
Probab=100.00 E-value=3.5e-45 Score=395.60 Aligned_cols=349 Identities=16% Similarity=0.189 Sum_probs=242.0
Q ss_pred hhhhhhcCCCceEEEEeechhhHHHHHHHHHhCCCcEEEecCCCChhHHHHHHCCCeEEeCCCCCCcCCCCCCCCCCEEE
Q 009293 66 ECIVDFKNRKGWIHFVGIGGSGLSALAKLALKQGFEVSGSDLVWSSYMEGLLEAGANLHIGHSVSNIQGNDGSRFPNAVV 145 (538)
Q Consensus 66 ~~~~~~~~~~~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~d~vv 145 (538)
..+..+..|+|+| .-|. .|++. |.+. ||| |++++.++||.+++.++.... ....++
T Consensus 32 ~~i~~i~~DSR~v---~~g~-------lFva~-~~~~-gh~-----fi~~A~~~GA~~~v~~~~~~~-------~~~~i~ 87 (481)
T PRK14022 32 VQFDDISYDSRTA---DEGT-------LFFAK-GAYF-KHK-----FLQNAITQGLKLYVSEKDYEV-------GIPQVI 87 (481)
T ss_pred ccEEEEEecCcCC---CCCC-------EEEEc-CCCc-hHH-----HHHHHHHCCCeEEEEecccCC-------CCcEEE
Confidence 5677788898877 2222 23333 3344 999 999999999999887542111 112344
Q ss_pred EcCCCCCCCHHHHHHHHCCCCeeeHHHHHHHHhcCCcEEEEeCCCCchHHHHHHHHHHHHcCCCeEEEeCCCCCCCC---
Q 009293 146 ASSAIPQDNVEILHAKSVGVPIYKRDYWLAKLTEKYNLIAVSGSHGKSTTASMLAYVLKAMGDDLTAIVGAHVPQFP--- 222 (538)
Q Consensus 146 vsp~i~~~~~~l~~a~~~gi~vi~~~~~l~~~~~~~~vI~VTGTnGKTTTt~ml~~iL~~~G~~v~~~~g~~~~~~~--- 222 (538)
|. +...++.... ..++++|+.+.++||||||||||||++||+++|+..|.. +.+.|+....++
T Consensus 88 V~----d~~~al~~la---------~~~~~~p~~~~~vIgITGTnGKTTT~~~l~~iL~~~g~~-~~~~g~~~~~ig~~~ 153 (481)
T PRK14022 88 VP----DIKKAMSLIA---------MEFYDNPQHKLKLLAFTGTKGKTTAAYFAYHILKQLHKP-AMLSTMNTTLDGETF 153 (481)
T ss_pred EC----CHHHHHHHHH---------HHHhcChhhccEEEEEeCCCcHHHHHHHHHHHHHHCCCC-EEEEeeeeeccCCee
Confidence 42 2333333332 245666777889999999999999999999999999864 566655333222
Q ss_pred ------CC---c-------cccCCCcEEEEeecCcce---eeccccCcEEEEcCCCcccccc--CCCHHHHHHHHHHHhh
Q 009293 223 ------DG---S-------IFYGGGKNFVLEADEYDG---CFLGLSPSVAVVTNLDWEHVDI--FEDEDAVKSIFRRFLK 281 (538)
Q Consensus 223 ------~~---~-------~~~~~~~~~VlE~~~~d~---~~~~~~p~vaVITNI~~DHld~--~gs~e~~~~~k~~~~~ 281 (538)
.+ . ......+++|+|.++... ....++|+++|||||++||+|+ |+|+|+|+++|.+++
T Consensus 154 ~~~~~~~p~~~~l~~~~~~~~e~g~~~~v~EvsS~~~~~~r~~~~~pdiaViTNI~~DHld~L~~~t~e~~a~aK~~i~- 232 (481)
T PRK14022 154 FKSALTTPESLDLFKMMAEAVDNGMTHLIMEVSSQAYLVGRVYGLTFDVGVFLNITPDHIGPIEHPTFEDYFYHKRLLM- 232 (481)
T ss_pred eeCCCCCchHHHHHHHHHHHHHCCCCEEEEEechhHHHhccccCccccEEEEcCCCcccCCCCCCCCHHHHHHHHHHHh-
Confidence 11 0 011245788999976422 2225799999999999999999 899999999999987
Q ss_pred cccCCcEEEEcCC-CHHHHHHHHHhhhhcCccccCCcccccCcccccCCCCceEEEeeccCCCcceEeeeeecCCCCeEE
Q 009293 282 QIRVGGHLVICGD-SQCARSLLDQIKQDTGLKYSGGVVSNQSSDLWGQGHDYKIITYGFSSFNDWYAESVCPNVQGGSDY 360 (538)
Q Consensus 282 ~~~~~~~~Vln~d-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~d~~~~~i~~~~~~g~~f 360 (538)
++++.+|+|.| ++. ..+..... ..++++|+....+++...+ .|
T Consensus 233 --~~~~~~Vln~d~d~~-~~~~~~~~------------------------~~~~~~~g~~~~~~~~~~~---------~~ 276 (481)
T PRK14022 233 --ENSKAVVVNSDMDHF-SELLEQVT------------------------PQEHDFYGIDSENQIMASN---------AF 276 (481)
T ss_pred --cCCCEEEEEcCCCHH-HHHHHHhc------------------------CCCEEEEecCCccceEEEE---------EE
Confidence 45688999988 554 22222211 1246677765333443221 23
Q ss_pred EEEECCeeeeEEEeCCCchhHHHHHHHHHHHHHHhcCCccCCcccHHHHHHHhccCCCCCCceEEEeeeCCeEEEEECCC
Q 009293 361 ILCERGRPLAQISLQIPGVHNVLNSLAVIATVLTLIGDKRQSHESIACLKLPLSKFMGVSRRFDLIGTIYGCHIYDDFAH 440 (538)
Q Consensus 361 ~~~~~~~~~~~~~l~l~G~hnv~NalaAia~a~~lgi~~~~~~~~~~~I~~~L~~f~~~~gR~E~v~~~~g~~ii~D~Ah 440 (538)
.+..++.....+.++++|.||++|+++|++++..+|++ .+.|+++|++ .++|||||++...+++.+|+||||
T Consensus 277 ~~~~~~~~~~~~~l~l~G~hnv~NalaAia~a~~lgi~-------~~~i~~~L~~-~~~~gR~e~i~~~~g~~vi~Dyah 348 (481)
T PRK14022 277 SFEATGKLAGTYDIQLIGKFNQENAMAAGLACLRLGAS-------LEDIQKGIAQ-TPVPGRMEVLTQSNGAKVFIDYAH 348 (481)
T ss_pred EEEEcccCCceEEEEEechhhHHHHHHHHHHHHHcCCC-------HHHHHHHhcc-CCCCCCeEEEECCCCCEEEEECCC
Confidence 33322211124667899999999999999999999997 7999999999 999999999975467899999999
Q ss_pred CHHHHHHHHHHHHhhCCCCeEEEEEccCCCCchHHHHHHHHHHhc-cCCE-EEEeccCCCC
Q 009293 441 HPTEVRAVLQAARQRFPNKALIAVFQPHTYSRLVVLKDDFANALS-EADQ-VVVSAVLVFW 499 (538)
Q Consensus 441 np~s~~a~l~~l~~~~~~~r~i~V~g~~~~~r~~~~~~~~~~~~~-~~D~-vi~~~~~~~~ 499 (538)
||+|++++++++++. +.+|+++|||+++. +......++.+.+. ..|. ++++..++++
T Consensus 349 NP~s~~aal~~l~~~-~~~r~i~V~G~~~e-~g~~~~~~~~~~~~~~~~~~vi~~~~~~r~ 407 (481)
T PRK14022 349 NGDSLNKLIDVVEEH-QKGKLILLLGAAGN-KGESRRPDFGRVANRHPYLQVILTADDPNN 407 (481)
T ss_pred CHHHHHHHHHHHhhh-CCCCEEEEECCCCC-CCcchhHHHHHHHHhcCCceEEEccCCCCC
Confidence 999999999999874 45689999998653 33333456666444 3343 7887766544
No 32
>PRK11930 putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase; Provisional
Probab=100.00 E-value=8.3e-44 Score=407.45 Aligned_cols=384 Identities=13% Similarity=0.102 Sum_probs=270.7
Q ss_pred hccCCceeeecccccccchhhhhhhcCCCceEEEEeechhhHHHHHHHHHhCCCcEEEecCCCChhHHHHHHCCCeEEeC
Q 009293 47 MKKKNSVSVLTNCTFKRNEECIVDFKNRKGWIHFVGIGGSGLSALAKLALKQGFEVSGSDLVWSSYMEGLLEAGANLHIG 126 (538)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~~~~~~~~~~Ga~~~~~ 126 (538)
|.++++.+.+.+..+...+..+..+..|+|.| .+.-|. .|++.+|.++|||| |++++.++||.+++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~i~~i~~DSR~v-~~~~g~-------lFval~G~~~DGh~-----fi~~A~~~GA~~iv~ 69 (822)
T PRK11930 3 YTLESISGILGAEGLGDKDAIIDQILTDSRSL-SFPENT-------LFFALKGERNDGHR-----YIQELYEKGVRNFVV 69 (822)
T ss_pred ccHHHHHHHhCCeeccCCCceeCEEEecCCcc-CCCCCc-------EEEEeCCCCCCHHH-----HHHHHHHCCCEEEEE
Confidence 45555655555543322235577788898877 111221 34445999999999 999999999999887
Q ss_pred CCCCCcCCCCCCCCCCEEEEcCCCCCCCHHHHHHHHCCCCeeeHHHHHHHHhcCCcEEEEeCCCCchHHHHHHHHHHHHc
Q 009293 127 HSVSNIQGNDGSRFPNAVVASSAIPQDNVEILHAKSVGVPIYKRDYWLAKLTEKYNLIAVSGSHGKSTTASMLAYVLKAM 206 (538)
Q Consensus 127 ~~~~~~~~~~~~~~~d~vvvsp~i~~~~~~l~~a~~~gi~vi~~~~~l~~~~~~~~vI~VTGTnGKTTTt~ml~~iL~~~ 206 (538)
+.+..... . .....+++|. +...++.... .++. +..+.++||||||||||||++||+++|+..
T Consensus 70 ~~~~~~~~-~-~~~~~~i~V~----d~~~al~~la----------~~~~-~~~~~~vIgVTGT~GKTTT~~ll~~iL~~~ 132 (822)
T PRK11930 70 SEEKHPEE-S-YPDANFLKVK----DPLKALQELA----------AYHR-SQFDIPVIGITGSNGKTIVKEWLYQLLSPD 132 (822)
T ss_pred eccccccc-c-CCCCCEEEEC----CHHHHHHHHH----------HHHH-HhCCCCEEEEeCCCcHHHHHHHHHHHHhcc
Confidence 43210000 0 0012234442 2233333321 2222 445678999999999999999999999988
Q ss_pred CCCeEEEeCCCCCCCCCCc-c--ccCCCcEEEEeecCccee-----eccccCcEEEEcCCCccccccCCCHHHHHHHHHH
Q 009293 207 GDDLTAIVGAHVPQFPDGS-I--FYGGGKNFVLEADEYDGC-----FLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRR 278 (538)
Q Consensus 207 G~~v~~~~g~~~~~~~~~~-~--~~~~~~~~VlE~~~~d~~-----~~~~~p~vaVITNI~~DHld~~gs~e~~~~~k~~ 278 (538)
|.. ....++....++.+. . ...+.+++|+|++..+.. ...++|+++|||||++||+|||||+|+|+++|.+
T Consensus 133 ~~~-~~~~~~~n~~ig~p~~~~~~~~~~~~~V~E~s~s~~~~~~~l~~~~~PdiaViTNI~~dHLd~~gt~e~y~~aK~~ 211 (822)
T PRK11930 133 YNI-VRSPRSYNSQIGVPLSVWQLNEEHELGIFEAGISQPGEMEALQKIIKPTIGILTNIGGAHQENFRSIKQKIMEKLK 211 (822)
T ss_pred CcE-ecCCcccCcchhHHHHHhcCCCCCcEEEEEeCCCCCChHHHHhhhhCCCEEEEcCccHHHHhhcCCHHHHHHHHHH
Confidence 753 444443332222111 0 124568999999754332 2248899999999999999999999999999999
Q ss_pred HhhcccCCcEEEEcCCCHHHHHHHHHhhhhcCccccCCcccccCcccccCCCCceEEEeeccC-CCcceEeeeeecCCCC
Q 009293 279 FLKQIRVGGHLVICGDSQCARSLLDQIKQDTGLKYSGGVVSNQSSDLWGQGHDYKIITYGFSS-FNDWYAESVCPNVQGG 357 (538)
Q Consensus 279 ~~~~~~~~~~~Vln~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~d~~~~~i~~~~~~g 357 (538)
++.. .+.+|+|.||+....+...... ..++++|+... .+|+++.++... .++
T Consensus 212 i~~~---~~~~vin~Dd~~~~~~~~~~~~-----------------------~~~~~~~g~~~~~~d~~~~~i~~~-~~~ 264 (822)
T PRK11930 212 LFKD---CDVIIYNGDNELISSCITKSNL-----------------------TLKLISWSRKDPEAPLYIPFVEKK-EDH 264 (822)
T ss_pred HhcC---CCEEEEeCCCHHHHHHHHhhhc-----------------------CCcEEEEcCCCCCCcEEEEEEEEc-CCc
Confidence 9864 4789999999987665433211 13567888653 457777776544 245
Q ss_pred eEEEEEECCeeeeEEEeCCCchhHHHHHHHHHHHHHHhcCCccCCcccHHHHHHHhccCCCCCCceEEEeeeCCeEEEEE
Q 009293 358 SDYILCERGRPLAQISLQIPGVHNVLNSLAVIATVLTLIGDKRQSHESIACLKLPLSKFMGVSRRFDLIGTIYGCHIYDD 437 (538)
Q Consensus 358 ~~f~~~~~~~~~~~~~l~l~G~hnv~NalaAia~a~~lgi~~~~~~~~~~~I~~~L~~f~~~~gR~E~v~~~~g~~ii~D 437 (538)
..|.+..++.. ..+.++++|.||++|+++|++++..+|++ +++++++|++|++++||||++...+++.+|+|
T Consensus 265 ~~~~~~~~~~~-~~~~l~l~G~hnv~NalaAia~a~~lGi~-------~~~i~~~L~~f~~~~gR~e~~~~~~g~~vIdD 336 (822)
T PRK11930 265 TVISYTYKGED-FHFEIPFIDDASIENLIHCIAVLLYLGYS-------ADQIQERMARLEPVAMRLEVKEGINNCTLIND 336 (822)
T ss_pred eEEEEEeCCce-EEEEecCCCHHHHHHHHHHHHHHHHcCCC-------HHHHHHHHHhCCCCCCeeEEEEcCCCcEEEEC
Confidence 56776654433 46889999999999999999999999998 79999999999999999999976678999999
Q ss_pred -CCCCHHHHHHHHHHHHhhCCCCeEEEEEccCC--CCchHHHHHHHHHHh--ccCCEEEEeccC
Q 009293 438 -FAHHPTEVRAVLQAARQRFPNKALIAVFQPHT--YSRLVVLKDDFANAL--SEADQVVVSAVL 496 (538)
Q Consensus 438 -~Ahnp~s~~a~l~~l~~~~~~~r~i~V~g~~~--~~r~~~~~~~~~~~~--~~~D~vi~~~~~ 496 (538)
|||||+|++++|+++++..+.+++++|+|.+. ..+...++..+.+.+ ..+|.||+.+..
T Consensus 337 Syn~nP~s~~aaL~~l~~~~~~~~~ilIlG~m~elG~~~~~~~~~l~~~l~~~~i~~vi~~G~~ 400 (822)
T PRK11930 337 SYNSDLQSLDIALDFLNRRSQSKKKTLILSDILQSGQSPEELYRKVAQLISKRGIDRLIGIGEE 400 (822)
T ss_pred CCCCCHHHHHHHHHHHHhcccCCCEEEEECChHhcCchHHHHHHHHHHHHHHcCCCEEEEECHH
Confidence 89999999999999987654457888888653 234455667777744 358999998754
No 33
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=6.5e-43 Score=371.67 Aligned_cols=335 Identities=19% Similarity=0.186 Sum_probs=238.1
Q ss_pred ceEEEEeechhhHHHHHHHHHhCCCcEEEecCCCChhHH-HHHHCCCeEEeCCCCCCcCCCCCCCCCCEEEEcCCCCCCC
Q 009293 76 GWIHFVGIGGSGLSALAKLALKQGFEVSGSDLVWSSYME-GLLEAGANLHIGHSVSNIQGNDGSRFPNAVVASSAIPQDN 154 (538)
Q Consensus 76 ~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~~~~~-~~~~~Ga~~~~~~~~~~~~~~~~~~~~d~vvvsp~i~~~~ 154 (538)
.+|+|+|+|++|+| +|++|+.+|++|.|+|.+...... ..... .. .+....+. +.+|++|.+|++++.+
T Consensus 4 ~~i~iiGlG~~G~s-lA~~l~~~G~~V~g~D~~~~~~~~~~~~~~--~~--~~~~~~~~-----~~~dlvV~s~gi~~~~ 73 (418)
T PRK00683 4 QRVVVLGLGVTGKS-IARFLAQKGVYVIGVDKSLEALQSCPYIHE--RY--LENAEEFP-----EQVDLVVRSPGIKKEH 73 (418)
T ss_pred CeEEEEEECHHHHH-HHHHHHHCCCEEEEEeCCccccchhHHHhh--hh--cCCcHHHh-----cCCCEEEECCCCCCCc
Confidence 46999999999998 799999999999999965432110 00110 00 11111111 2579999999999999
Q ss_pred HHHHHHHHCCCCeeeHHHHHHHHh--cCCcEEEEeCCCCchHHHHHHHHHHHHcCCCeEEEeCCCC-CCCCCCccccCCC
Q 009293 155 VEILHAKSVGVPIYKRDYWLAKLT--EKYNLIAVSGSHGKSTTASMLAYVLKAMGDDLTAIVGAHV-PQFPDGSIFYGGG 231 (538)
Q Consensus 155 ~~l~~a~~~gi~vi~~~~~l~~~~--~~~~vI~VTGTnGKTTTt~ml~~iL~~~G~~v~~~~g~~~-~~~~~~~~~~~~~ 231 (538)
+.+.+|++.|++++++.++..... .+.++|+||||||||||++||+++|+.+|.. ..+.|+.. +.+ . ..+..
T Consensus 74 ~~l~~A~~~g~~vv~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~ml~~iL~~~g~~-~~~~GniG~p~l---~-~~~~~ 148 (418)
T PRK00683 74 PWVQAAIASHIPVVTDIQLAFQTPEFTRYPSLGITGSTGKTTTILFLEHLLKRLGIP-AFAMGNIGIPIL---D-GMQQP 148 (418)
T ss_pred HHHHHHHHCCCcEEEHHHHHHhhhhcCCCCEEEEECCCChHHHHHHHHHHHHHcCCC-eEEECCcCHHHH---H-HhhcC
Confidence 999999999999999988754432 2458999999999999999999999999974 56667631 111 1 12346
Q ss_pred cEEEEeecCcceee-c--cccCcEEEEcCCCccccccCCCHHHHHHHHHHHhhcccCCcEEEEcCCCHHHHHHHHHhhhh
Q 009293 232 KNFVLEADEYDGCF-L--GLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQD 308 (538)
Q Consensus 232 ~~~VlE~~~~d~~~-~--~~~p~vaVITNI~~DHld~~gs~e~~~~~k~~~~~~~~~~~~~Vln~dd~~~~~~~~~~~~~ 308 (538)
+++|+|+++++... . ...|+++|||||++||+|||+|+|+|+++|.+++..+. +.|+... .
T Consensus 149 ~~~V~E~~s~~~~~~~~~~~~~~iavitNi~~dHld~~~s~e~y~~aK~~i~~~~~-------~~~~~~~----~----- 212 (418)
T PRK00683 149 GVRVVEISSFQLADQEKSYPVLSGGMILNISDNHLDYHGNLSAYFQAKQNIAKCLR-------NPDDLWV----G----- 212 (418)
T ss_pred CEEEEEechhhhCcCcccCCCccEEEEecCChhHhccCCCHHHHHHHHHHHHHhhh-------Ccccccc----c-----
Confidence 78999999886542 1 23448999999999999999999999999999986432 2222110 0
Q ss_pred cCccccCCcccccCcccccCCCCceEEEeeccCCCcceEeeeeecCCCCeEEEEEECCeeeeEEEeCCCchhHHHHHHHH
Q 009293 309 TGLKYSGGVVSNQSSDLWGQGHDYKIITYGFSSFNDWYAESVCPNVQGGSDYILCERGRPLAQISLQIPGVHNVLNSLAV 388 (538)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~d~~~~~i~~~~~~g~~f~~~~~~~~~~~~~l~l~G~hnv~NalaA 388 (538)
...+|+.. +.. .. .. .+..... ...++++|.||++|+++|
T Consensus 213 ------------------------~~~~~~~~----~~~-~~-----~~-~~~~~~~-----~~~~~~~g~hn~~Na~aA 252 (418)
T PRK00683 213 ------------------------DERSYGHS----YLE-YV-----QE-IMRLLDK-----GSALKPLYLHDRYNYCAA 252 (418)
T ss_pred ------------------------ccCCcCce----eec-Cc-----ch-hhhhhcc-----ccccCCCccchHHHHHHH
Confidence 00112210 000 00 00 0000001 124578999999999999
Q ss_pred HHHHHH-hcCCccCCcccHHHHHHHhccCCCCCCceEEEeeeCCeEEEEE-CCCCHHHHHHHHHHHHhhCCCCeEEEEEc
Q 009293 389 IATVLT-LIGDKRQSHESIACLKLPLSKFMGVSRRFDLIGTIYGCHIYDD-FAHHPTEVRAVLQAARQRFPNKALIAVFQ 466 (538)
Q Consensus 389 ia~a~~-lgi~~~~~~~~~~~I~~~L~~f~~~~gR~E~v~~~~g~~ii~D-~Ahnp~s~~a~l~~l~~~~~~~r~i~V~g 466 (538)
++++.. +|++ .++++++|++|++++||||++...+|..+|+| ||+||+|++++++.. .+|+++|+|
T Consensus 253 ~a~~~~l~g~~-------~~~i~~~l~~~~~~~~R~e~v~~~~g~~~i~Ds~~t~~~s~~~al~~~-----~~~~i~vlG 320 (418)
T PRK00683 253 YALANEVFPIS-------EESFLEAVATFEKPPHRMEYLGEKDGVHYINDSKATTVSAVEKALLAV-----GNQVIVILG 320 (418)
T ss_pred HHHHHHhcCCC-------HHHHHHHHHhCCCCCCceEEEeecCCeEEEEcCCCCCHHHHHHHHHhC-----CCCEEEEEc
Confidence 999999 5997 79999999999999999999976678999999 799999999988753 257899999
Q ss_pred cCCCCchHHHHHHHHH-HhccCCEEEEeccC
Q 009293 467 PHTYSRLVVLKDDFAN-ALSEADQVVVSAVL 496 (538)
Q Consensus 467 ~~~~~r~~~~~~~~~~-~~~~~D~vi~~~~~ 496 (538)
.+. +++++. .+.+ +.+.+|.|++++..
T Consensus 321 ~~~--~~~d~~-~l~~~~~~~~~~v~~~G~~ 348 (418)
T PRK00683 321 GRN--KGCDFS-SLLPVLRQTAKHVVAMGEC 348 (418)
T ss_pred CCC--CCCCHH-HHHHHHHHhCCEEEEECCC
Confidence 533 344432 3444 33468999999754
No 34
>PRK11929 putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase; Provisional
Probab=100.00 E-value=3.3e-42 Score=401.16 Aligned_cols=362 Identities=20% Similarity=0.254 Sum_probs=258.0
Q ss_pred hhhhhhcCCCceEEEEeechhhHHHHHHHHHhCCCcEEEecCCCChhHHHHHHCCCeEEeCCCCCCcCCCCCCCCCCEEE
Q 009293 66 ECIVDFKNRKGWIHFVGIGGSGLSALAKLALKQGFEVSGSDLVWSSYMEGLLEAGANLHIGHSVSNIQGNDGSRFPNAVV 145 (538)
Q Consensus 66 ~~~~~~~~~~~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~d~vv 145 (538)
..+..+..|+|.| .-|. .|++.+|.++|||| |+.++.++||.+++.+.+.... ...+++
T Consensus 524 ~~i~~i~~dSr~v---~~g~-------lFval~G~~~dGh~-----fi~~A~~~GA~~~i~~~~~~~~------~~~~i~ 582 (958)
T PRK11929 524 PHAGAVSTDSRSV---GRGE-------LFVALRGENFDGHD-----YLPQAFAAGACAAVVERQVADV------DLPQIV 582 (958)
T ss_pred cccCeEEeeCCcc---CCCC-------EEEEecCCCCCHHH-----HHHHHHHcCCEEEEECCCccCC------CCCEEE
Confidence 6667788888876 3222 33444999999999 9999999999998875432100 123444
Q ss_pred EcCCCCCCCHHHHHHHHCCCCeeeHHHHHHHHhcCCcEEEEeCCCCchHHHHHHHHHHHHcCCC--eEEEeCCCCCCCCC
Q 009293 146 ASSAIPQDNVEILHAKSVGVPIYKRDYWLAKLTEKYNLIAVSGSHGKSTTASMLAYVLKAMGDD--LTAIVGAHVPQFPD 223 (538)
Q Consensus 146 vsp~i~~~~~~l~~a~~~gi~vi~~~~~l~~~~~~~~vI~VTGTnGKTTTt~ml~~iL~~~G~~--v~~~~g~~~~~~~~ 223 (538)
|. +...++.... ..++.+ .+.++|+||||||||||++||+++|+.+|.+ +....|+.+..++.
T Consensus 583 V~----d~~~al~~la---------~~~~~~--~~~~vI~VTGTnGKTTT~~ml~~iL~~~~~~~~~~~t~gn~n~~~g~ 647 (958)
T PRK11929 583 VD----DTRAALGRLA---------TAWRAR--FSLPVVAITGSNGKTTTKEMIAAILAAWQGEDRVLATEGNFNNEIGV 647 (958)
T ss_pred eC----CHHHHHHHHH---------HHHHhc--CCCcEEEEeCCCchHHHHHHHHHHHHhcCCCCcEEccCcccCCCcch
Confidence 43 2223333221 122222 2568999999999999999999999998533 23344443333322
Q ss_pred Cc-c--ccCCCcEEEEeecCc-----ceeeccccCcEEEEcCCCccccccCCCHHHHHHHHHHHhhcccCCcEEEEcCCC
Q 009293 224 GS-I--FYGGGKNFVLEADEY-----DGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDS 295 (538)
Q Consensus 224 ~~-~--~~~~~~~~VlE~~~~-----d~~~~~~~p~vaVITNI~~DHld~~gs~e~~~~~k~~~~~~~~~~~~~Vln~dd 295 (538)
.. . .....+++|+|++.. +.....++|+++|||||++||+|||||+|+|+++|.+++..+++++.+|+|.||
T Consensus 648 ~~~l~~~~~~~~~~VlE~s~~~~g~~~~~~~~~~pdiaViTNI~~dHLd~~~s~e~y~~aK~~i~~~~~~~~~~Vln~Dd 727 (958)
T PRK11929 648 PLTLLRLRAQHRAAVFELGMNHPGEIAYLAAIAAPTVALVTNAQREHQEFMHSVEAVARAKGEIIAALPEDGVAVVNGDD 727 (958)
T ss_pred HHHHhcCCCCCcEEEEEeCCCCCccHHHHhCccCCCEEEEcCCcHHHhhhcCCHHHHHHHHHHHHccCCCCCEEEEECCc
Confidence 11 1 123568999998743 322223699999999999999999999999999999999988888999999999
Q ss_pred HHHHHHHHHhhhhcCccccCCcccccCcccccCCCCceEEEeeccCCCcceEeeeee----cCCCCeEEEEEECCeeeeE
Q 009293 296 QCARSLLDQIKQDTGLKYSGGVVSNQSSDLWGQGHDYKIITYGFSSFNDWYAESVCP----NVQGGSDYILCERGRPLAQ 371 (538)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~d~~~~~i~~----~~~~g~~f~~~~~~~~~~~ 371 (538)
+....+..... ..++++|+....+++.+..+.. ...++..|.+..++.. ..
T Consensus 728 ~~~~~~~~~~~------------------------~~~~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 782 (958)
T PRK11929 728 PYTAIWAKLAG------------------------ARRVLRFGLQPGADVYAEKIAKDISVGEAGGTRCQVVTPAGS-AE 782 (958)
T ss_pred HHHHHHHHhhc------------------------CCcEEEEeCCCCcceEeeecccceeecCCCceEEEEEECCce-EE
Confidence 98766543321 1246778765444544332211 1123455666544332 46
Q ss_pred EEeCCCchhHHHHHHHHHHHHHHhcCCccCCcccHHHHHHHhccCCCCCCceEEEeeeCCeEEEEE-CCCCHHHHHHHHH
Q 009293 372 ISLQIPGVHNVLNSLAVIATVLTLIGDKRQSHESIACLKLPLSKFMGVSRRFDLIGTIYGCHIYDD-FAHHPTEVRAVLQ 450 (538)
Q Consensus 372 ~~l~l~G~hnv~NalaAia~a~~lgi~~~~~~~~~~~I~~~L~~f~~~~gR~E~v~~~~g~~ii~D-~Ahnp~s~~a~l~ 450 (538)
+.++++|.||++|+++|++++..+|++ .++++++|++|+++|||||++...+++.+|+| |||||+|++++++
T Consensus 783 ~~l~l~G~hnv~NalaAia~a~~lGi~-------~~~i~~~L~~f~~~~gR~e~~~~~~~~~iidDsya~np~s~~aaL~ 855 (958)
T PRK11929 783 VYLPLIGEHNLRNALAAIACALAAGAS-------LKQIRAGLERFQPVAGRMQRRRLSCGTRIIDDTYNANPDSMRAAID 855 (958)
T ss_pred EEeCCCcHHHHHHHHHHHHHHHHcCCC-------HHHHHHHHhhCCCCCCCceEEEcCCCcEEEEcCCCCCHHHHHHHHH
Confidence 789999999999999999999999997 79999999999999999999976578999999 8999999999999
Q ss_pred HHHhhCCCCeEEEEEccCCC--CchHHHHHHHHHHh-c-cCCEEEEeccC
Q 009293 451 AARQRFPNKALIAVFQPHTY--SRLVVLKDDFANAL-S-EADQVVVSAVL 496 (538)
Q Consensus 451 ~l~~~~~~~r~i~V~g~~~~--~r~~~~~~~~~~~~-~-~~D~vi~~~~~ 496 (538)
++++.. .+|+++|+|++.. ++.+..+.++.+.+ + ..|.|++.+..
T Consensus 856 ~l~~~~-~~~~i~VlG~~~e~g~~~~~~h~~~g~~~~~~~~~~vi~~Ge~ 904 (958)
T PRK11929 856 VLAELP-NGPRALVLGDMLELGDNGPAMHREVGKYARQLGIDALITLGEA 904 (958)
T ss_pred HHHhcc-CCCEEEEECCchhcCcHHHHHHHHHHHHHHHcCCCEEEEECcC
Confidence 998753 3578999997643 33444456676643 3 57888888654
No 35
>COG0769 MurE UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=3e-42 Score=367.09 Aligned_cols=346 Identities=24% Similarity=0.320 Sum_probs=255.9
Q ss_pred CCCcEEEecCCCChhHHHHHHCCCeEEeCCCCCCcCCCCCCCCCCEEEEcCCCCCCCHHHHHHHHCCCCeeeHHHHHHHH
Q 009293 98 QGFEVSGSDLVWSSYMEGLLEAGANLHIGHSVSNIQGNDGSRFPNAVVASSAIPQDNVEILHAKSVGVPIYKRDYWLAKL 177 (538)
Q Consensus 98 ~G~~v~g~D~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~d~vvvsp~i~~~~~~l~~a~~~gi~vi~~~~~l~~~ 177 (538)
+|..++|+| |...+.+.|+.+++.+....... ....+|++. + .+..+.... ..+++.|
T Consensus 30 ~g~~~~g~~-----~~~~a~~~Gavav~~~~~~~~~~----~~~~vi~V~-~---~~~~~~~~a---------~~~y~~p 87 (475)
T COG0769 30 PGTKVDGHD-----FIAGAIAPGAVAVVVEKDIKLAE----AGVPVIVVT-G---TNGKLTTLA---------LAFYGLP 87 (475)
T ss_pred ecccccccc-----chHhHhhCCCEEEEecccccccc----cCCCEEEEc-C---cHHHHHHHH---------HHhccCc
Confidence 677899999 99999999999888753321110 012234443 2 333332221 3577778
Q ss_pred hcCCcEEEEeCCCCchHHHHHHHHHHHHcCCCeEEEeCCCCCCC----CC------Cc----------cccCCCcEEEEe
Q 009293 178 TEKYNLIAVSGSHGKSTTASMLAYVLKAMGDDLTAIVGAHVPQF----PD------GS----------IFYGGGKNFVLE 237 (538)
Q Consensus 178 ~~~~~vI~VTGTnGKTTTt~ml~~iL~~~G~~v~~~~g~~~~~~----~~------~~----------~~~~~~~~~VlE 237 (538)
++++++|+||||||||||++++.++++..|++++ ++|+....+ .. +. ......++.++|
T Consensus 88 s~~l~vigvTGTNgKTt~t~~~~~~~~~~g~~~~-~~gT~g~~~~~~~~~~~~~tTP~~~~l~~~~~~~~d~~~e~~vmE 166 (475)
T COG0769 88 SGKLKVIGVTGTNGKTTTTSLLAQILKKLGKKTA-LIGTEGDELSPGILEPTGLTTPEALDLQNLLRDLLDRGAEIAVME 166 (475)
T ss_pred ccCceEEEEcCCCcHHHHHHHHHHHHHhcCCceE-EEEEEeeeccCCcccccCCCCccHHHHHHHHHHHHHcCCcEEEEE
Confidence 7679999999999999999999999999998753 343332222 11 00 011245788999
Q ss_pred ecCc---ceeeccccCcEEEEcCCCccccccCCCHHHHHHHHHHHhhcccCCcEEEEcCCCHHHHHHHHHhhhhcCcccc
Q 009293 238 ADEY---DGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQDTGLKYS 314 (538)
Q Consensus 238 ~~~~---d~~~~~~~p~vaVITNI~~DHld~~gs~e~~~~~k~~~~~~~~~~~~~Vln~dd~~~~~~~~~~~~~~~~~~~ 314 (538)
.++. +..+..+..+++++||+++||+|+|+++|+|..+|..++....+.+..|+|.||+....+.....+.
T Consensus 167 vssh~l~~~Rv~~~~f~v~~ftnls~DHlD~h~t~e~Y~~aK~~lf~~~~~~~~~Vin~dd~~~~~~~~~~~~~------ 240 (475)
T COG0769 167 VSSHGLVQGRVEGVTFDVGVFTNLSRDHLDYHGTMEYYGAAKAVLFESLPHSGEAVINPDDGHGLDYKERLKNA------ 240 (475)
T ss_pred eehhHHHhCCccCceEEEEeccccCchhhcccCcHHHHHHHHHHHHhhcCCCccEEEccCCchHHHHHHHHHhc------
Confidence 8764 3445567889999999999999999999999999999987667778999999999875544443321
Q ss_pred CCcccccCcccccCCCCceEEEeeccCCCcceEe-eeeecCCCCeEEEEEECCeeeeEEEeCCCchhHHHHHHHHHHHHH
Q 009293 315 GGVVSNQSSDLWGQGHDYKIITYGFSSFNDWYAE-SVCPNVQGGSDYILCERGRPLAQISLQIPGVHNVLNSLAVIATVL 393 (538)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~d~~~~-~i~~~~~~g~~f~~~~~~~~~~~~~l~l~G~hnv~NalaAia~a~ 393 (538)
..++++|+...+...... .+.... .+..+.+..++.. ..++++++|.||++|+|+|++++.
T Consensus 241 ----------------~~~~~~~~~~~~~~~~~~~~i~~~~-~g~~~~~~~~~~~-~~~~~~L~G~fNv~NaLaA~a~~~ 302 (475)
T COG0769 241 ----------------LGDYITYGCDFKRPDLDYRGIEESS-SGSDFVFEPSGGI-GEYELPLPGLFNVYNALAAVAAAL 302 (475)
T ss_pred ----------------CCCEEEeCCCCchhhhhhccceeee-ccceeEEEccCCc-eeEeccccchhHHHHHHHHHHHHH
Confidence 125677776543221111 133222 3445555544443 688999999999999999999999
Q ss_pred HhcCCccCCcccHHHHHHHhccCCCCCCceEEEeeeCCeEEEEECCCCHHHHHHHHHHHHhhCCCCeEEEEEccCCCCch
Q 009293 394 TLIGDKRQSHESIACLKLPLSKFMGVSRRFDLIGTIYGCHIYDDFAHHPTEVRAVLQAARQRFPNKALIAVFQPHTYSRL 473 (538)
Q Consensus 394 ~lgi~~~~~~~~~~~I~~~L~~f~~~~gR~E~v~~~~g~~ii~D~Ahnp~s~~a~l~~l~~~~~~~r~i~V~g~~~~~r~ 473 (538)
.+|++ .++|.++++++++++||||.+.. +++.+++||||||+++++++++++.. ..+|+|+|||+.+ +|+
T Consensus 303 ~lG~~-------~e~i~~~l~~~~~v~GRmE~v~~-~~~~v~VDyAHnPd~le~~L~~~~~~-~~g~li~VfG~gG-DrD 372 (475)
T COG0769 303 ALGVD-------LEDILAGLETLKPVPGRMELVNI-GGKLVIVDYAHNPDGLEKALRAVRLH-AAGRLIVVFGCGG-DRD 372 (475)
T ss_pred HcCCC-------HHHHHHHHHhcCCCCCcceEecC-CCCeEEEEeccChHHHHHHHHHHHhh-cCCcEEEEECccC-CCC
Confidence 99998 89999999999999999999985 59999999999999999999999953 3578999999866 567
Q ss_pred HHHHHHHHH-HhccCCEEEEeccCCCCc
Q 009293 474 VVLKDDFAN-ALSEADQVVVSAVLVFWL 500 (538)
Q Consensus 474 ~~~~~~~~~-~~~~~D~vi~~~~~~~~~ 500 (538)
+.+...|.. +.+.+|.+++|+..++.+
T Consensus 373 ~~kr~~mg~ia~~~ad~vivt~dnpR~e 400 (475)
T COG0769 373 KSKRPDMGAIAEQLADIVIVTSDNPRSE 400 (475)
T ss_pred cccccchHHHHHhcCCcEEEcCCCCCCc
Confidence 777777877 556899999999877664
No 36
>TIGR01499 folC folylpolyglutamate synthase/dihydrofolate synthase. A mutation study of the FolC gene of E. coli suggests that both activitities belong to the same active site. Because some examples are monofunctional (and these cannot be separated phylogenetically), the model is treated as subfamily, not equivalog.
Probab=100.00 E-value=2.3e-40 Score=349.98 Aligned_cols=287 Identities=20% Similarity=0.252 Sum_probs=204.4
Q ss_pred HHHHHHhcCCcEEEEeCCCCchHHHHHHHHHHHHcCCCeEEEeCCCCCCCCCC------cc-------------------
Q 009293 172 YWLAKLTEKYNLIAVSGSHGKSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDG------SI------------------- 226 (538)
Q Consensus 172 ~~l~~~~~~~~vI~VTGTnGKTTTt~ml~~iL~~~G~~v~~~~g~~~~~~~~~------~~------------------- 226 (538)
+.+++|++++++||||||||||||++|++++|+++|++++.++++++..+... .+
T Consensus 9 ~~lg~p~~~~~vI~VtGTNGKgSt~~~l~~iL~~~g~~vg~~tSphl~~~~eri~i~g~~i~~~~~~~~~~~v~~~~~~~ 88 (397)
T TIGR01499 9 EALGNPQDLYPVIHVAGTNGKGSTCAFLESILRAAGYKVGLFTSPHLVSFNERIRINGEPISDEELAQAFEQVRPILEKL 88 (397)
T ss_pred HHcCCcHhhCCEEEEeCCCChHHHHHHHHHHHHHcCCCeeEEeCCCcCccceEEEECCEECCHHHHHHHHHHHHHHHHhc
Confidence 56778888889999999999999999999999999999999988875322110 00
Q ss_pred ------------------ccCCCcEEEEeec---CcceeeccccCcEEEEcCCCccccccCC-CHHHHHHHHHHHhhccc
Q 009293 227 ------------------FYGGGKNFVLEAD---EYDGCFLGLSPSVAVVTNLDWEHVDIFE-DEDAVKSIFRRFLKQIR 284 (538)
Q Consensus 227 ------------------~~~~~~~~VlE~~---~~d~~~~~~~p~vaVITNI~~DHld~~g-s~e~~~~~k~~~~~~~~ 284 (538)
...+.+++|+|.+ +.|.. ..++|+++|||||++||+|+|| |+|+|+.+|++++ +
T Consensus 89 ~~~~~~fe~~t~~A~~~f~~~~~d~~VlEvGlggrld~t-n~i~p~vaViTnI~~DHl~~lG~t~e~ia~~Ka~I~---k 164 (397)
T TIGR01499 89 SQQPTYFELLTLLAFLYFAQAQVDVAVLEVGLGGRLDAT-NVIEPLVSVITSIGLDHTEILGDTLEEIAWEKAGII---K 164 (397)
T ss_pred cCCCCHHHHHHHHHHHHHHHCCCCEEEEeecCCCCcccc-cccCCCeEEEccccHHHHHHhCccHHHHHHHHhCcc---C
Confidence 0135678899974 44543 3468999999999999999999 8999999998876 4
Q ss_pred CCcEEEEcCCCHHHHHHHHHhhhhcCccccCCcccccCcccccCCCCceEEEeeccCCCcceEeeeeecCCCCeEEEEEE
Q 009293 285 VGGHLVICGDSQCARSLLDQIKQDTGLKYSGGVVSNQSSDLWGQGHDYKIITYGFSSFNDWYAESVCPNVQGGSDYILCE 364 (538)
Q Consensus 285 ~~~~~Vln~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~d~~~~~i~~~~~~g~~f~~~~ 364 (538)
++..+|+|.|++....++.+.+... +.++++++. ++..... .+..|.+..
T Consensus 165 ~~~~~v~~~d~~~~~~~~~~~a~~~---------------------~~~~~~~~~----~~~~~~~-----~~~~~~~~~ 214 (397)
T TIGR01499 165 EGVPIVTGPQEPEALNVLKKKAQEK---------------------GAPLFVVGR----DFNYSET-----DENYLSFSG 214 (397)
T ss_pred CCCCEEEcCCChHHHHHHHHHHHHc---------------------CCCEEEecc----ceeeccc-----ccceEEeec
Confidence 5678999999988776665433221 123444542 2221111 112344432
Q ss_pred CCeeeeEEEeCCCchhHHHHHHHHHHHHHHhcCCccCCcccHHHHHHHhccCCCCCCceEEEeeeCCeEEEEECCCCHHH
Q 009293 365 RGRPLAQISLQIPGVHNVLNSLAVIATVLTLIGDKRQSHESIACLKLPLSKFMGVSRRFDLIGTIYGCHIYDDFAHHPTE 444 (538)
Q Consensus 365 ~~~~~~~~~l~l~G~hnv~NalaAia~a~~lgi~~~~~~~~~~~I~~~L~~f~~~~gR~E~v~~~~g~~ii~D~Ahnp~s 444 (538)
.......+.++++|.||++|+++|++++..+|.+.. ..+.+.|+++|+++. ||||||++.. +++.+|+|+||||+|
T Consensus 215 ~~~~~~~~~~~l~G~~~~~N~~~Aiaa~~~lg~~~~--~i~~~~i~~~L~~~~-~pGR~e~i~~-~~~~viiD~AHNp~a 290 (397)
T TIGR01499 215 ANLFLEPLALSLLGDHQAENAALALAALEVLGKQRP--KLSEEAIRKGLANTI-WPGRLEILSE-DNPNILLDGAHNPHS 290 (397)
T ss_pred ccccccccCCCCCCHHHHHHHHHHHHHHHHHHhccC--CCCHHHHHHHHHhCC-CCceEEEEec-CCCEEEEECCCCHHH
Confidence 111112466799999999999999999999986410 012789999999997 9999999964 468999999999999
Q ss_pred HHHHHHHHHhhCCCCeEEEEEccCCCCchHHHHHHHHHHhccCCE-EEEeccCCCC
Q 009293 445 VRAVLQAARQRFPNKALIAVFQPHTYSRLVVLKDDFANALSEADQ-VVVSAVLVFW 499 (538)
Q Consensus 445 ~~a~l~~l~~~~~~~r~i~V~g~~~~~r~~~~~~~~~~~~~~~D~-vi~~~~~~~~ 499 (538)
++++++++++.++++++++|||+.+ +++.. ..+..+.+.++. ++++.+..+|
T Consensus 291 ~~~~l~~l~~~~~~~~i~~V~G~~~-dkd~~--~~~~~l~~~~~~d~~~~~~~~~r 343 (397)
T TIGR01499 291 AEALAEWFKKRFNGRPIILLFGALA-DKDAA--AMLAPLKPVVDKEVFVTPFDYPR 343 (397)
T ss_pred HHHHHHHHHHhcCCCCeEEEEEeeC-CCCHH--HHHHHHhhccCcEEEEECCCCCC
Confidence 9999999987666668899999854 34433 222222333444 6666555555
No 37
>PLN02913 dihydrofolate synthetase
Probab=100.00 E-value=5.4e-38 Score=339.43 Aligned_cols=301 Identities=18% Similarity=0.218 Sum_probs=210.3
Q ss_pred HHHHHHHhcCCcEEEEeCCCCchHHHHHHHHHHHHcCCCeEEEeCCCCCCCCCC---c-----c----------------
Q 009293 171 DYWLAKLTEKYNLIAVSGSHGKSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDG---S-----I---------------- 226 (538)
Q Consensus 171 ~~~l~~~~~~~~vI~VTGTnGKTTTt~ml~~iL~~~G~~v~~~~g~~~~~~~~~---~-----~---------------- 226 (538)
.+.+++|++++++||||||||||||++|+++||+++|++|+.++++++..+... | +
T Consensus 65 l~~LG~P~~~~~vIhVaGTNGKGSt~a~l~~iL~~aG~~vG~fTSPHl~~~~ERi~in~~g~~is~~~~~~~~~~v~~~~ 144 (510)
T PLN02913 65 MDRLGNPHSKFKAVHVAGTKGKGSTAAFLSNILRAQGYSVGCYTSPHLRSIRERISVGKLGKPVSTNTLNDLFHGIKPIL 144 (510)
T ss_pred HHHcCCchhhCcEEEEeCCCchHHHHHHHHHHHHhcCCCeEEECCCCCceeceEEEECCCCCcCCHHHHHHHHHHHHHHH
Confidence 356778887889999999999999999999999999999999999987543211 0 0
Q ss_pred -------------------------ccCCCcEEEEee---cCcceeecc--ccCcEEEEcCCCccccccCC-CHHHHHHH
Q 009293 227 -------------------------FYGGGKNFVLEA---DEYDGCFLG--LSPSVAVVTNLDWEHVDIFE-DEDAVKSI 275 (538)
Q Consensus 227 -------------------------~~~~~~~~VlE~---~~~d~~~~~--~~p~vaVITNI~~DHld~~g-s~e~~~~~ 275 (538)
...+.+++|+|+ +..|..... ..|+++|||||+.||++++| |+|+|+.+
T Consensus 145 ~~~~~~~~~~~T~FE~~T~~A~~~F~~~~vD~aVlEvGlGGrlDaTNvi~~~~p~vsVITnIg~DH~~~LG~Tle~IA~e 224 (510)
T PLN02913 145 DEAIQLENGSLTHFEVLTALAFKLFAQENVDIAVIEAGLGGARDATNVIDSSGLAASVITTIGEEHLAALGGSLESIALA 224 (510)
T ss_pred HHhhhccCCCCCHHHHHHHHHHHHHhhCCCCEEEEEecCCCCcccccccCCCCCcEEEEccccHHHHhhhcccHHHHHHH
Confidence 002456788886 346665432 34699999999999999999 89999999
Q ss_pred HHHHhhcccCCcEEEEcC-CCHHHHHHHHHhhhhcCccccCCcccccCcccccCCCCceEEEeeccCCCcceEeeeeecC
Q 009293 276 FRRFLKQIRVGGHLVICG-DSQCARSLLDQIKQDTGLKYSGGVVSNQSSDLWGQGHDYKIITYGFSSFNDWYAESVCPNV 354 (538)
Q Consensus 276 k~~~~~~~~~~~~~Vln~-dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~d~~~~~i~~~~ 354 (538)
|+.++ +++.++|++. ..+....++.+.++..+ ++++.++.. ..++....+..
T Consensus 225 KagIi---k~g~pvV~~~~~~~~~~~vi~~~a~~~~---------------------a~l~~~~~~-~~~~~~~~~~~-- 277 (510)
T PLN02913 225 KSGII---KQGRPVVLGGPFLPHIESILRDKASSMN---------------------SPVVSASDP-GVRSSIKGIIT-- 277 (510)
T ss_pred Hhhhc---cCCCCEEECCCCCHHHHHHHHHHHHHhC---------------------CCEEEeccc-cccceeecccc--
Confidence 98776 5778888875 44555555544433321 344444311 11111111100
Q ss_pred CCCeEEEEEE-----CC--e---eeeEEEeCCCchhHHHHHHHHHHHHHHh-----cCCccCCcccHHHHHHHhccCCCC
Q 009293 355 QGGSDYILCE-----RG--R---PLAQISLQIPGVHNVLNSLAVIATVLTL-----IGDKRQSHESIACLKLPLSKFMGV 419 (538)
Q Consensus 355 ~~g~~f~~~~-----~~--~---~~~~~~l~l~G~hnv~NalaAia~a~~l-----gi~~~~~~~~~~~I~~~L~~f~~~ 419 (538)
..+..|.+.. .+ . ....+.++++|.||++|+++|++++..+ +++ .+.|+++|++++ |
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~L~G~hq~~Naa~Alaa~~~L~~~~~~i~-------~~~I~~gL~~~~-~ 349 (510)
T PLN02913 278 DNGKPCQSCDIVIRVEKDDPLFIELSDVNLRMLGSHQLQNAVTAACAALCLRDQGWRIS-------DASIRAGLENTN-L 349 (510)
T ss_pred cCCceeEEeccccccccccccccccccccCCCCCHHHHHHHHHHHHHHHHHHhcCCCCC-------HHHHHHHHHhCC-C
Confidence 0122233211 01 0 1124678899999999999999999988 344 789999999998 9
Q ss_pred CCceEEEeee-------CCeEEEEECCCCHHHHHHHHHHHHhhCCCCeEEEEEccCCCCchHHHHHHHHH-Hhc--cCCE
Q 009293 420 SRRFDLIGTI-------YGCHIYDDFAHHPTEVRAVLQAARQRFPNKALIAVFQPHTYSRLVVLKDDFAN-ALS--EADQ 489 (538)
Q Consensus 420 ~gR~E~v~~~-------~g~~ii~D~Ahnp~s~~a~l~~l~~~~~~~r~i~V~g~~~~~r~~~~~~~~~~-~~~--~~D~ 489 (538)
|||||++... +++.+|+|+||||+|++++++++++.++.+|+++|||+. ++|+... +.+ ... .+|.
T Consensus 350 pGR~E~i~~~~~~~~~~~~~~vIlDgAHNp~s~~al~~~L~~~~~~~ki~~V~gml---~DKd~~~-~l~~l~~~~~~d~ 425 (510)
T PLN02913 350 LGRSQFLTSKEAEVLGLPGATVLLDGAHTKESAKALVDTIKTAFPEARLALVVAMA---SDKDHLA-FASEFLSGLKPEA 425 (510)
T ss_pred CCceEEeeccccccccCCCCEEEEECCCCHHHHHHHHHHHHHhcCCCCEEEEEEcc---CCCCHHH-HHHHHhcccCCCE
Confidence 9999998521 356899999999999999999998755667889999974 4455433 444 444 5899
Q ss_pred EEEeccCC----CCcccccCcHHHHHHHH
Q 009293 490 VVVSAVLV----FWLIIFAVSSFWLIMAI 514 (538)
Q Consensus 490 vi~~~~~~----~~~~~~~~~~~~~~~~~ 514 (538)
++++.+.. .| +.+.+++.+.+
T Consensus 426 v~~~~~~~~~~~~r----~~~~~~l~~~~ 450 (510)
T PLN02913 426 VFLTEADIAGGKSR----STSASALKEAW 450 (510)
T ss_pred EEEEcCCCCCCCCC----CCCHHHHHHHH
Confidence 99998752 34 56666666543
No 38
>TIGR02068 cya_phycin_syn cyanophycin synthetase. Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions.
Probab=100.00 E-value=1.4e-37 Score=354.99 Aligned_cols=303 Identities=20% Similarity=0.230 Sum_probs=214.3
Q ss_pred HhcCCcEEEEeCCCCchHHHHHHHHHHHHcCCCeEEEeCCC--CCC--CC-CCc---------cccCCCcEEEEeecCcc
Q 009293 177 LTEKYNLIAVSGSHGKSTTASMLAYVLKAMGDDLTAIVGAH--VPQ--FP-DGS---------IFYGGGKNFVLEADEYD 242 (538)
Q Consensus 177 ~~~~~~vI~VTGTnGKTTTt~ml~~iL~~~G~~v~~~~g~~--~~~--~~-~~~---------~~~~~~~~~VlE~~~~d 242 (538)
+..+.|+|+||||||||||++||+++|+.+|++++.+.+.. ++. +. ..+ ......+++|+|.++..
T Consensus 475 ~~~~ipiI~VTGTNGKTTTt~mia~IL~~~G~~vG~~tS~G~~i~~~~i~~g~~t~p~sa~~~l~~~~vd~aVlE~~~gg 554 (864)
T TIGR02068 475 DDGRIPIVSVTGTNGKTTTTRLVAHILKQTGKVVGMTTTDGVYIGKYLVEKGDNTGPASARRILMDPTVDAAVLETARGG 554 (864)
T ss_pred CCCceEEEEEeCCCCHhHHHHHHHHHHHHCCCcEEEecCCceEECCEEEecCCCCChHHHHHHhhCCCCCEEEEEccCCc
Confidence 44467899999999999999999999999999876544321 111 00 001 11235678999986543
Q ss_pred ---eeeccccCcEEEEcCCCccccccC--CCHHHHHHHHHHHhhcccCCcEEEEcCCCHHHHHHHHHhhhhcCccccCCc
Q 009293 243 ---GCFLGLSPSVAVVTNLDWEHVDIF--EDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQDTGLKYSGGV 317 (538)
Q Consensus 243 ---~~~~~~~p~vaVITNI~~DHld~~--gs~e~~~~~k~~~~~~~~~~~~~Vln~dd~~~~~~~~~~~~~~~~~~~~~~ 317 (538)
......+|+++|||||+.||++++ +|+|+|+.+|+.+++.+++++.+|+|.||+.+..+.+.+
T Consensus 555 il~~gl~~~~pdvaVITNI~~DHL~~~g~~tlE~ia~~K~~i~~~i~~~g~~VlNaDd~~~~~~a~~~------------ 622 (864)
T TIGR02068 555 ILREGLAFDRCDVGVVTNIAGDHLGIGDINTIEDLADVKRVVVEVVLPDGYAVLNADDPMVAAMAEKC------------ 622 (864)
T ss_pred hhhccCCcccccEEEEecCCHHHcCCCCCCCHHHHHHHHHHHHHhhcCCCEEEEECCCHHHHHHHHhC------------
Confidence 223345799999999999999865 699999999999999889999999999999877665432
Q ss_pred ccccCcccccCCCCceEEEeeccCCCcceEeeeeec-----CCCCeEEEEEECCe----eeeEEEeCCCc--hhHHHHHH
Q 009293 318 VSNQSSDLWGQGHDYKIITYGFSSFNDWYAESVCPN-----VQGGSDYILCERGR----PLAQISLQIPG--VHNVLNSL 386 (538)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~g~~~~~d~~~~~i~~~-----~~~g~~f~~~~~~~----~~~~~~l~l~G--~hnv~Nal 386 (538)
..++++|+.+...++...++... ..++..+....... ....+.+.++| .||++|++
T Consensus 623 -------------~~~vi~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~lpl~~~G~g~~nv~Nal 689 (864)
T TIGR02068 623 -------------KGKIAYFSMDPNNPTVAAHIADGGRAVYYENGYIVIARGGDEVAIARIAAIPLTMGGRVAFQIENAL 689 (864)
T ss_pred -------------CCCEEEEecCCCChHHHHHHHcCCcEEEEcCCEEEEEecCccccccceeeeccccCCcccchHHHHH
Confidence 13567777543222211111000 00111111111100 01133444445 89999999
Q ss_pred HHHHHHHHhcCCccCCcccHHHHHHHhccCCC----CCCceEEEeeeCCeEEEEECCCCHHHHHHHHHHHHhhCCCCeEE
Q 009293 387 AVIATVLTLIGDKRQSHESIACLKLPLSKFMG----VSRRFDLIGTIYGCHIYDDFAHHPTEVRAVLQAARQRFPNKALI 462 (538)
Q Consensus 387 aAia~a~~lgi~~~~~~~~~~~I~~~L~~f~~----~~gR~E~v~~~~g~~ii~D~Ahnp~s~~a~l~~l~~~~~~~r~i 462 (538)
+|+++++.+|++ .+.|+++|++|.+ +|||||++. .+++.+|+||||||++++++++++++. +.+|++
T Consensus 690 aAiaaa~~lgi~-------~e~I~~gL~~F~~~~~~~pGR~e~~~-~~g~~vI~DyAHNP~a~~all~~l~~~-~~~r~i 760 (864)
T TIGR02068 690 AAVAAAWALGVP-------IELIRAGIRTFDADAAQAPGRFNLFN-LGGAHVLVDYGHNPAAIEAVGAAIRNW-PARRRI 760 (864)
T ss_pred HHHHHHHHcCCC-------HHHHHHHHHhccccccCCCCceEEEE-eCCcEEEEEcCCCHHHHHHHHHHHHhc-CCCCEE
Confidence 999999999997 7999999999987 999999985 478999999999999999999999875 446788
Q ss_pred EEEccCCCCchHHHHHHHHHHh-ccCCEEEEeccCCCCcccccCcHHHHHHHH
Q 009293 463 AVFQPHTYSRLVVLKDDFANAL-SEADQVVVSAVLVFWLIIFAVSSFWLIMAI 514 (538)
Q Consensus 463 ~V~g~~~~~r~~~~~~~~~~~~-~~~D~vi~~~~~~~~~~~~~~~~~~~~~~~ 514 (538)
+|+|..+ +|+.....++.+.+ +.+|.||++++++.|....+...+.+.+.+
T Consensus 761 ~Vig~~g-dr~~~~~~~lg~~l~~~~d~vil~~~~~~rg~~~ge~~~~i~~~~ 812 (864)
T TIGR02068 761 GVIGGPG-DRRDEDLVEQGELLGGAFDQIILKEDDDVRGRPRGEAAALLRQGL 812 (864)
T ss_pred EEECCCC-CCChhHHHHHHHHHHHhCCEEEEEeCCCcCCCCCchHHHHHHHHH
Confidence 8888765 45444456666644 469999999988766333555566565544
No 39
>COG0285 FolC Folylpolyglutamate synthase [Coenzyme metabolism]
Probab=100.00 E-value=8.8e-37 Score=317.90 Aligned_cols=290 Identities=20% Similarity=0.262 Sum_probs=214.2
Q ss_pred HHHHHHHhcCCcEEEEeCCCCchHHHHHHHHHHHHcCCCeEEEeCCCCCCCCCC------cc---------------c--
Q 009293 171 DYWLAKLTEKYNLIAVSGSHGKSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDG------SI---------------F-- 227 (538)
Q Consensus 171 ~~~l~~~~~~~~vI~VTGTnGKTTTt~ml~~iL~~~G~~v~~~~g~~~~~~~~~------~~---------------~-- 227 (538)
.+.+++|++..++|+|+|||||+|||+|+.+||+++|++|+.++++++..+... .+ .
T Consensus 34 l~~LGnP~~~~~vIhVaGTNGKGSt~afl~siL~~aG~~VG~yTSPHL~~~~ERI~ing~~Isd~~~~~~~~~ve~~~~~ 113 (427)
T COG0285 34 LERLGNPQKSPPVIHVAGTNGKGSTCAFLESILREAGYKVGVYTSPHLLSFNERIRINGEPISDEELAAAFERVEEAAGS 113 (427)
T ss_pred HHHcCCccccCCeEEEeCCCCchhHHHHHHHHHHHcCCCceEECCCccCccceEEEECCEECCHHHHHHHHHHHHHHhcc
Confidence 367888988899999999999999999999999999999999999987665431 00 0
Q ss_pred ---------------------cCCCcEEEEee---cCcceeeccccCcEEEEcCCCccccccCC-CHHHHHHHHHHHhhc
Q 009293 228 ---------------------YGGGKNFVLEA---DEYDGCFLGLSPSVAVVTNLDWEHVDIFE-DEDAVKSIFRRFLKQ 282 (538)
Q Consensus 228 ---------------------~~~~~~~VlE~---~~~d~~~~~~~p~vaVITNI~~DHld~~g-s~e~~~~~k~~~~~~ 282 (538)
....+++|+|. +++|... .+.|+++|||||+.||++++| |.|.|+..|+.++
T Consensus 114 ~~~~~~T~FE~~Ta~Af~~F~~~~vD~aIlEVGLGGRlDATN-Vi~p~vsvIT~I~lDH~~~LG~tie~IA~EKAGI~-- 190 (427)
T COG0285 114 LDLISLTYFEVLTAMAFLYFAEAKVDVAILEVGLGGRLDATN-VIEPDVSVITSIGLDHTAFLGDTLESIAREKAGII-- 190 (427)
T ss_pred cccCCCcHHHHHHHHHHHHHHhCCCCEEEEeccccccccchh-ccCCceEEEcccChhHHHHhCCcHHHHHHHhhhhc--
Confidence 01246778885 4677765 366999999999999999999 6788998887664
Q ss_pred ccCCcEEEEcC-CCHHHHHHHHHhhhhcCccccCCcccccCcccccCCCCceEEEeeccCCCcceEeeeeecCCCCeEEE
Q 009293 283 IRVGGHLVICG-DSQCARSLLDQIKQDTGLKYSGGVVSNQSSDLWGQGHDYKIITYGFSSFNDWYAESVCPNVQGGSDYI 361 (538)
Q Consensus 283 ~~~~~~~Vln~-dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~d~~~~~i~~~~~~g~~f~ 361 (538)
+++.++|+.. +.|.+..++.+.+.... +.+..++. ++...+ .+..|.
T Consensus 191 -k~g~P~v~~~~~~p~a~~vi~~~a~~~~---------------------~~~~~~~~----~~~~~~------~~~~~~ 238 (427)
T COG0285 191 -KAGKPAVIGEQQPPEALNVIAERAEELG---------------------APLFVLGP----DFQVLE------EGNGFS 238 (427)
T ss_pred -cCCCcEEECCCCCHHHHHHHHHHHHhcC---------------------CCeeeccc----chhhcc------ccceEE
Confidence 6777888887 55767766666554321 23333321 111111 123444
Q ss_pred EEECCeeeeEEEeCCCchh-HHHHHHHHHHHHHHhcCCccCCcccHHHHHHHhccCCCCCCceEEEeeeCCeEEEEECCC
Q 009293 362 LCERGRPLAQISLQIPGVH-NVLNSLAVIATVLTLIGDKRQSHESIACLKLPLSKFMGVSRRFDLIGTIYGCHIYDDFAH 440 (538)
Q Consensus 362 ~~~~~~~~~~~~l~l~G~h-nv~NalaAia~a~~lgi~~~~~~~~~~~I~~~L~~f~~~~gR~E~v~~~~g~~ii~D~Ah 440 (538)
+.. +.....+.+++.|.| |..||++|++++..++... +.+.|++||++.. ||||||++.. ++.+++|+||
T Consensus 239 ~~~-~~~~~~~~lp~l~~~~Q~~NAa~Ai~al~~l~~~i-----~~~~i~~gl~~~~-wpGR~e~l~~--~p~i~lDgAH 309 (427)
T COG0285 239 FQG-GGGLLDLPLPLLGGHHQIENAALAIAALEALGKEI-----SEEAIRKGLANVD-WPGRLERLSE--NPLILLDGAH 309 (427)
T ss_pred Eec-CCeeeeeccccccchhHHHHHHHHHHHHHHhcccC-----CHHHHHHHHHhCc-CCceEEEecC--CCeEEEECCC
Confidence 443 222357888988888 9999999999999998752 3799999999999 9999999974 5999999999
Q ss_pred CHHHHHHHHHHHHhhCCCCe-EEEEEccCCCCchHHHHHHHHHHhccCCEEEEeccCCCCcccccCcHHHHH
Q 009293 441 HPTEVRAVLQAARQRFPNKA-LIAVFQPHTYSRLVVLKDDFANALSEADQVVVSAVLVFWLIIFAVSSFWLI 511 (538)
Q Consensus 441 np~s~~a~l~~l~~~~~~~r-~i~V~g~~~~~r~~~~~~~~~~~~~~~D~vi~~~~~~~~~~~~~~~~~~~~ 511 (538)
||+|+.++.+++++.++.++ +++|||+. .+|+....+..+.+..+++++++....| +.+.+.+.
T Consensus 310 Np~aa~~La~~l~~~~~~~~~~~~v~g~l---~dKd~~~~l~~L~~~~~~~~~~~~~~~r----a~~~~~l~ 374 (427)
T COG0285 310 NPHAARALAETLKTLFNDRPRLTLVFGML---KDKDIAGMLAALLPIVDEIYTTPLPWPR----ALDAEELL 374 (427)
T ss_pred CHHHHHHHHHHHHHHhccCCceEEEEEee---cCCCHHHHHHHhhccCcEEEEccCCCcc----cCCHHHHH
Confidence 99999999999999887655 89999983 4555544444444444677777765555 44444443
No 40
>PRK10846 bifunctional folylpolyglutamate synthase/ dihydrofolate synthase; Provisional
Probab=100.00 E-value=2.5e-36 Score=320.72 Aligned_cols=289 Identities=17% Similarity=0.196 Sum_probs=198.0
Q ss_pred HHHHHHHhcCCcEEEEeCCCCchHHHHHHHHHHHHcCCCeEEEeCCCCCCCCCC------cc------------------
Q 009293 171 DYWLAKLTEKYNLIAVSGSHGKSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDG------SI------------------ 226 (538)
Q Consensus 171 ~~~l~~~~~~~~vI~VTGTnGKTTTt~ml~~iL~~~G~~v~~~~g~~~~~~~~~------~~------------------ 226 (538)
.+.+++|+++.++||||||||||||++|++++|+++|++++.++++++..+..+ .+
T Consensus 39 l~~lg~p~~~~~~I~VtGTNGKgSt~~~l~~iL~~~G~~vG~~tSphl~~~~eri~i~g~~i~~~~~~~~~~~~~~~~~~ 118 (416)
T PRK10846 39 AARLDLLKPAPFVFTVAGTNGKGTTCRTLESILMAAGYRVGVYSSPHLVRYTERVRIQGQELPESAHTASFAEIEAARGD 118 (416)
T ss_pred HHHhCCCccCCCEEEEECCCChHHHHHHHHHHHHHcCCCceEECCCCCCCcceEEEECCEECCHHHHHHHHHHHHHHhcC
Confidence 467888888889999999999999999999999999999999998876433211 00
Q ss_pred -----------------ccCCCcEEEEeec---CcceeeccccCcEEEEcCCCccccccCC-CHHHHHHHHHHHhhcccC
Q 009293 227 -----------------FYGGGKNFVLEAD---EYDGCFLGLSPSVAVVTNLDWEHVDIFE-DEDAVKSIFRRFLKQIRV 285 (538)
Q Consensus 227 -----------------~~~~~~~~VlE~~---~~d~~~~~~~p~vaVITNI~~DHld~~g-s~e~~~~~k~~~~~~~~~ 285 (538)
.....+++|+|.+ ..|.. ..++|+++|||||++||+|+|| |+|+|+.+|+.++. +
T Consensus 119 ~~~t~fe~~t~~a~~~f~~~~vd~~VlEvglggrld~t-n~i~p~vaviTnI~~DHld~lG~t~e~ia~~Ka~Iik---~ 194 (416)
T PRK10846 119 ISLTYFEYGTLSALWLFKQAQLDVVILEVGLGGRLDAT-NIVDADVAVVTSIALDHTDWLGPDRESIGREKAGIFR---A 194 (416)
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCEEEEEecCCCCchhh-hccCCCEEEECCccHHHHHHhcCCHHHHHHHHHhhhc---C
Confidence 0124578899975 23432 2468999999999999999999 79999999998875 4
Q ss_pred CcEEEEcCCCHHHHHHHHHhhhhcCccccCCcccccCcccccCCCCceEEEeeccCCCcceEeeeeecCCCCeEEEEEEC
Q 009293 286 GGHLVICGDSQCARSLLDQIKQDTGLKYSGGVVSNQSSDLWGQGHDYKIITYGFSSFNDWYAESVCPNVQGGSDYILCER 365 (538)
Q Consensus 286 ~~~~Vln~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~d~~~~~i~~~~~~g~~f~~~~~ 365 (538)
++.+|+|.++.. ......+... ..+++.++. ++... . .+..|.+...
T Consensus 195 ~~~~V~~~~d~~--~~~~~~a~~~---------------------~~~~~~~~~----~~~~~-~-----~~~~~~~~~~ 241 (416)
T PRK10846 195 EKPAVVGEPDMP--STIADVAQEK---------------------GALLQRRGV----DWNYS-V-----TDHDWAFSDG 241 (416)
T ss_pred CCeEEECCccHh--HHHHHHHHHh---------------------CCcEEEecc----eeeee-c-----cCceEEEecC
Confidence 677888876621 1111111111 122222221 11110 0 0011222211
Q ss_pred CeeeeEEEeCCCchhHHHHHHHHHHHHHHhcCCccCCcccHHHHHHHhccCCCCCCceEEEeeeCCeEEEEECCCCHHHH
Q 009293 366 GRPLAQISLQIPGVHNVLNSLAVIATVLTLIGDKRQSHESIACLKLPLSKFMGVSRRFDLIGTIYGCHIYDDFAHHPTEV 445 (538)
Q Consensus 366 ~~~~~~~~l~l~G~hnv~NalaAia~a~~lgi~~~~~~~~~~~I~~~L~~f~~~~gR~E~v~~~~g~~ii~D~Ahnp~s~ 445 (538)
... ...++++ .||++|+++|++++..++... +.+.|+++|++++ ||||||++.. ++.+|+||||||+++
T Consensus 242 ~~~--~~~~~l~-~~~~~N~~~Aia~~~~~~~~i-----~~~~i~~~L~~~~-~~gR~e~~~~--~~~iI~D~AHNp~a~ 310 (416)
T PRK10846 242 DGT--LENLPLP-NVPLPNAATALAALRASGLEV-----SEQAIRDGIASAI-LPGRFQIVSE--SPRVILDVAHNPHAA 310 (416)
T ss_pred ccc--cccCCcc-chHHHHHHHHHHHHHHcCCCC-----CHHHHHHHHHhCC-CCceEEEEcC--CCcEEEECCCCHHHH
Confidence 111 1235555 479999999999997755321 2789999999998 9999999974 567999999999999
Q ss_pred HHHHHHHHhhCCCCeEEEEEccCCCCchHHHHHHHHHHhccCCEEEEeccCCCCcccccCcHHHHHHHH
Q 009293 446 RAVLQAARQRFPNKALIAVFQPHTYSRLVVLKDDFANALSEADQVVVSAVLVFWLIIFAVSSFWLIMAI 514 (538)
Q Consensus 446 ~a~l~~l~~~~~~~r~i~V~g~~~~~r~~~~~~~~~~~~~~~D~vi~~~~~~~~~~~~~~~~~~~~~~~ 514 (538)
+++++.+++..+++|+++|||..+ ++++...+..+.+.+|.++++..+..| +.+.+.+.+.+
T Consensus 311 ~~l~~~L~~~~~~~~ii~Vfg~~g---dkd~~~~l~~L~~~~d~viv~~~~~~r----~~~~~~l~~~~ 372 (416)
T PRK10846 311 EYLTGRLKALPKNGRVLAVIGMLH---DKDIAGTLACLKSVVDDWYCAPLEGPR----GATAEQLAEHL 372 (416)
T ss_pred HHHHHHHHHhcCCCCEEEEEEeeC---CCCHHHHHHHHhhhCCEEEEECCCCCC----CCCHHHHHHHh
Confidence 999999987544568999999754 333334444455568999888877555 45555555433
No 41
>PLN02881 tetrahydrofolylpolyglutamate synthase
Probab=100.00 E-value=6.1e-34 Score=303.51 Aligned_cols=306 Identities=16% Similarity=0.138 Sum_probs=210.6
Q ss_pred HHHHHHh--cCCcEEEEeCCCCchHHHHHHHHHHHHcCCCeEEEeCCCCCCCCCC------cc-----------------
Q 009293 172 YWLAKLT--EKYNLIAVSGSHGKSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDG------SI----------------- 226 (538)
Q Consensus 172 ~~l~~~~--~~~~vI~VTGTnGKTTTt~ml~~iL~~~G~~v~~~~g~~~~~~~~~------~~----------------- 226 (538)
+.++.|. +++++|||||||||||||+|+++||+++|++++.++++++..+... .+
T Consensus 50 ~~LG~p~~~~~l~vIhVaGTnGKGSt~a~l~siL~~~G~rvGl~tSPhL~~~rERiring~~Is~e~f~~~f~~v~~~l~ 129 (530)
T PLN02881 50 KILELEEAISRLKVIHVAGTKGKGSTCTFTESILRNCGFRTGLFTSPHLIDVRERFRLDGVDISEEKFLRYFWWCWDRLK 129 (530)
T ss_pred HHcCCCchhhcCCEEEEeCCCCHHHHHHHHHHHHHHCCCCEEEECCCccCcceeEEEECCEecCHHHHHHHHHHHHHHHH
Confidence 3455444 5778999999999999999999999999999999999874322110 00
Q ss_pred -----c-------------------cCCCcEEEEeec---CcceeeccccCcEEEEcCCCccccccCC-CHHHHHHHHHH
Q 009293 227 -----F-------------------YGGGKNFVLEAD---EYDGCFLGLSPSVAVVTNLDWEHVDIFE-DEDAVKSIFRR 278 (538)
Q Consensus 227 -----~-------------------~~~~~~~VlE~~---~~d~~~~~~~p~vaVITNI~~DHld~~g-s~e~~~~~k~~ 278 (538)
. ....+++|+|.+ ++|......+|+++|||||+.||+++|| |+|+|+..|+.
T Consensus 130 ~~~~~~~~~pt~Fe~lTlla~~~F~~~~vD~aVlEvGlgGr~DaTnvi~~p~v~vITnIg~DH~~~LG~Tle~IA~~Kag 209 (530)
T PLN02881 130 EKTTEDLPMPAYFRFLTLLAFKIFSAEQVDVAILEVGLGGRLDATNVVQKPVVCGITSLGYDHMEILGDTLGKIAGEKAG 209 (530)
T ss_pred HhcccccCCCcHHHHHHHHHHHHHHhCCCCEEEEEecCCCCchhhhccCCCCEEEEccccHHHHHhhcCCHHHHHHHHHH
Confidence 0 113467888863 5666554458999999999999999999 89999999988
Q ss_pred HhhcccCCcEEEEcCCCHHHHHHHHHhhhhcCccccCCcccccCcccccCCCCceEEEeeccCCCcceEeeeeecCCCCe
Q 009293 279 FLKQIRVGGHLVICGDSQCARSLLDQIKQDTGLKYSGGVVSNQSSDLWGQGHDYKIITYGFSSFNDWYAESVCPNVQGGS 358 (538)
Q Consensus 279 ~~~~~~~~~~~Vln~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~d~~~~~i~~~~~~g~ 358 (538)
++ +++.++|+..+++.+..++++.+++.+ ++++.++.. .
T Consensus 210 I~---k~g~p~vt~~q~~ea~~vl~~~A~e~~---------------------a~l~~v~~~---------------~-- 248 (530)
T PLN02881 210 IF---KPGVPAFTVPQPDEAMRVLEERASELG---------------------VPLQVVEPL---------------D-- 248 (530)
T ss_pred HH---hcCCCEEEeCCChHHHHHHHHHHHHhC---------------------CcEEEeccc---------------c--
Confidence 86 567788887777877777766554432 233222210 0
Q ss_pred EEEEEECCeeeeEEEeCCCchhHHHHHHHHHHHHHHh-cCC---c----cCCcccHHHHHHHhccCCCCCCceEEEeee-
Q 009293 359 DYILCERGRPLAQISLQIPGVHNVLNSLAVIATVLTL-IGD---K----RQSHESIACLKLPLSKFMGVSRRFDLIGTI- 429 (538)
Q Consensus 359 ~f~~~~~~~~~~~~~l~l~G~hnv~NalaAia~a~~l-gi~---~----~~~~~~~~~I~~~L~~f~~~~gR~E~v~~~- 429 (538)
.+.+ ..+.+++.|.||..|+++|++++..+ .-. . .......+.+++||+++. ||||||++...
T Consensus 249 ~~~~-------~~~~l~L~G~~Q~~NaalAla~~~~~l~~~~~~~~~~~~~~~~l~~~i~~GL~~~~-wpGR~e~v~~~~ 320 (530)
T PLN02881 249 SYGL-------SGLKLGLAGEHQYLNAGLAVALCSTWLQRTGHEEFEALLQAGTLPEQFIKGLSTAS-LQGRAQVVPDSY 320 (530)
T ss_pred ccee-------cccCCCCCChhHHHhHHHHHHHHHHHHhhccccccccccccCCCHHHHHHHHHhCC-CCceEEEecccc
Confidence 0111 13568899999999999999999875 210 0 000012568999999999 99999999631
Q ss_pred ------CCeEEEEECCCCHHHHHHHHHHHHhhCC--------------------------CCeEEEEEccCCCCchHHHH
Q 009293 430 ------YGCHIYDDFAHHPTEVRAVLQAARQRFP--------------------------NKALIAVFQPHTYSRLVVLK 477 (538)
Q Consensus 430 ------~g~~ii~D~Ahnp~s~~a~l~~l~~~~~--------------------------~~r~i~V~g~~~~~r~~~~~ 477 (538)
+++.+|+|+||||+|++++.++++...+ .+++++||++........+.
T Consensus 321 ~~~~~~~~~~~~LDGAHNp~s~~~l~~wf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvF~~~~dkD~~~lL 400 (530)
T PLN02881 321 INSEDSGDLVFYLDGAHSPESMEACARWFSSAIKGDEQSPGSGYGPHGGGGKSEDTESNKISEQILLFNCMSVRDPQLLL 400 (530)
T ss_pred ccccCCCCCeEEEECCCCHHHHHHHHHHHHHHhcccccCCcccccccccccccccccccCCCCEEEEEcCCCCCCHHHHH
Confidence 4578999999999999999999976332 23689999986643434445
Q ss_pred HHHHHHh----ccCCEEEEeccCCCCcc----cccCcHHHHHHHHhhHhhhhhcccc
Q 009293 478 DDFANAL----SEADQVVVSAVLVFWLI----IFAVSSFWLIMAINSVICIVRSMLP 526 (538)
Q Consensus 478 ~~~~~~~----~~~D~vi~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 526 (538)
..+.+.+ ..+|+++||+..+.+.+ ...-+...-......+-..|+++.+
T Consensus 401 ~~L~~~~~~~~~~f~~aiF~~n~~~~~~~~~~~~~~~~~~~l~~q~~l~~~W~~l~~ 457 (530)
T PLN02881 401 PPLANTCASNGVPFKKALFVPNISVYNKVGSGLPVDDPQVDLSWQFTLQRVWESLIR 457 (530)
T ss_pred HHHHHHHHhcCCCCCeEEEcCCccccCCCcccCCCcchhhhHHHHHHHHHHHHHhcc
Confidence 5555533 36999999986543321 1111111112345566677887753
No 42
>PF08245 Mur_ligase_M: Mur ligase middle domain; InterPro: IPR013221 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) [], MurD (6.3.2.9 from EC) [], MurE (6.3.2.13 from EC) [] and MurF (6.3.2.10 from EC) []. These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales []. This entry represents the C-terminal domain from all four stage 2 Mur enzymes: UDP-N-acetylmuramate-L-alanine ligase (MurC), UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (MurE), and UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF). This entry also includes folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate and cyanophycin synthetase that catalyses the biosynthesis of the cyanobacterial reserve material multi-L-arginyl-poly-L-aspartate (cyanophycin) [].; GO: 0005524 ATP binding, 0009058 biosynthetic process; PDB: 3LK7_A 2XJA_A 2WTZ_A 2GCA_A 1JBW_A 1JBV_A 2GC5_A 1FGS_A 2GCB_A 2GC6_A ....
Probab=99.96 E-value=9.8e-29 Score=234.48 Aligned_cols=178 Identities=31% Similarity=0.452 Sum_probs=134.3
Q ss_pred EeCCCCchHHHHHHHHHHHHcCCCeEEEeCCCCCCCCCC----ccccCCCcEEEEeecCc-----ceeeccccCcEEEEc
Q 009293 186 VSGSHGKSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDG----SIFYGGGKNFVLEADEY-----DGCFLGLSPSVAVVT 256 (538)
Q Consensus 186 VTGTnGKTTTt~ml~~iL~~~G~~v~~~~g~~~~~~~~~----~~~~~~~~~~VlE~~~~-----d~~~~~~~p~vaVIT 256 (538)
||||||||||++||+++|+.+|..+ ...|+....++.. .......+++|+|+++. +.... ++|+++|||
T Consensus 1 ITGT~GKTTTt~ml~~iL~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~V~E~~~~~~~~~~l~~~-~~p~i~viT 78 (188)
T PF08245_consen 1 ITGTNGKTTTTRMLAHILSAAGKVV-GTIGNTNNQIGLPLLLLNAREGGADIAVLEVSEGGLGDERLSFL-LKPDIAVIT 78 (188)
T ss_dssp EESSSSHHHHHHHHHHHHHHTTEEE-EEESSCHHHHHHHHHHHHHHHTTSSEEEEEESSSCCCTSTTSGG-SBESEEEE-
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCcc-cccccccchHHHHHHHhhhcccccceeeeeccCCccccceeeee-eehheeeec
Confidence 8999999999999999999998754 4455422111110 11224688999999877 22222 899999999
Q ss_pred CCCccccccCCCHHHHHHHHHHHhhcccCCcEEEEcCCCHHHHHHHHHhhhhcCccccCCcccccCcccccCCCCceEEE
Q 009293 257 NLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQDTGLKYSGGVVSNQSSDLWGQGHDYKIIT 336 (538)
Q Consensus 257 NI~~DHld~~gs~e~~~~~k~~~~~~~~~~~~~Vln~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (538)
||++||+|+|+++|+|+++|.++++.+++++.+|+|.|||.......... .++++
T Consensus 79 ni~~dH~~~~~s~~~~~~~k~~~~~~~~~~~~~v~n~dd~~~~~~~~~~~-------------------------~~v~~ 133 (188)
T PF08245_consen 79 NIGPDHLDRFGSIEEYAEAKAKIFRGLKPGGVAVLNADDPELAEIAANSK-------------------------CKVIT 133 (188)
T ss_dssp ---SSSHCCTSSHHHHHHHHHGGHTTTSTTSEEEEETTSHHHHHHHHHHT-------------------------TTEEE
T ss_pred eecccccccCCCHHHHHHHHHhhhhhcccceEEEecCCCHHHHHHHHhcC-------------------------CcEEE
Confidence 99999999999999999999999999998999999999996655554322 56899
Q ss_pred eeccCCCcceEeeeeecCCCCeEEEEE-ECCeeeeEEEeCCCchhHHHHHHHHHHHH
Q 009293 337 YGFSSFNDWYAESVCPNVQGGSDYILC-ERGRPLAQISLQIPGVHNVLNSLAVIATV 392 (538)
Q Consensus 337 ~g~~~~~d~~~~~i~~~~~~g~~f~~~-~~~~~~~~~~l~l~G~hnv~NalaAia~a 392 (538)
|+.....+++...+.... ++..|.+. .+.. ..++.++++|.||++|+++|+++|
T Consensus 134 ~~~~~~~~~~~~~i~~~~-~~~~~~i~~~~~~-~~~~~~~l~G~hn~~NalaA~a~a 188 (188)
T PF08245_consen 134 FGLDNSADIRASNISYSE-EGGRFRIISYNGE-EFEIELPLPGKHNVENALAAIAAA 188 (188)
T ss_dssp EESSSSSEEEEEEEEEET-TEEEEEEEEETTE-EEEEEESSSSHHHHHHHHHHHHHH
T ss_pred eccCcccceeeeeEEEec-CCcEEEEEEecCc-eEEEEecCCCHHHHHHHHHHHHhC
Confidence 999887777777776543 45666655 3343 357999999999999999999986
No 43
>PRK14016 cyanophycin synthetase; Provisional
Probab=99.95 E-value=2.8e-28 Score=273.83 Aligned_cols=245 Identities=24% Similarity=0.296 Sum_probs=161.5
Q ss_pred cCCCCCCC-HHHHHHHHCCCCeeeHHHHHHHHhcCCcEEEEeCCCCchHHHHHHHHHHHHcCCCeEEEeC--CCCCC---
Q 009293 147 SSAIPQDN-VEILHAKSVGVPIYKRDYWLAKLTEKYNLIAVSGSHGKSTTASMLAYVLKAMGDDLTAIVG--AHVPQ--- 220 (538)
Q Consensus 147 sp~i~~~~-~~l~~a~~~gi~vi~~~~~l~~~~~~~~vI~VTGTnGKTTTt~ml~~iL~~~G~~v~~~~g--~~~~~--- 220 (538)
+|+++... |....++..+.+++.+.... ....+.|+|+||||||||||++|++++|+.+|++++.... ..+..
T Consensus 446 sPgi~~~~~p~~g~~r~v~~~Iid~L~~~-~~~~ripiIaVTGTnGKTTTt~lla~iL~~~G~~vg~~~t~G~~i~~~~i 524 (727)
T PRK14016 446 APGLRMHLAPSEGKPRNVGEAIVDMLFPE-GDDGRIPIVAVTGTNGKTTTTRLIAHILKLSGKRVGMTTTDGVYIDGRLI 524 (727)
T ss_pred CcchhhccCCCCCcchhHHHHHHHHhccc-CCCCceeEEEEECCCCchHHHHHHHHHHHHcCCeEEEECCCCEEECCEEe
Confidence 67776533 43333444444444432111 1123568999999999999999999999999988643221 11111
Q ss_pred -CCC--C--c---c-ccCCCcEEEEeecCccee---eccccCcEEEEcCCCccccccCC--CHHHHHHHHHHHhhcccCC
Q 009293 221 -FPD--G--S---I-FYGGGKNFVLEADEYDGC---FLGLSPSVAVVTNLDWEHVDIFE--DEDAVKSIFRRFLKQIRVG 286 (538)
Q Consensus 221 -~~~--~--~---~-~~~~~~~~VlE~~~~d~~---~~~~~p~vaVITNI~~DHld~~g--s~e~~~~~k~~~~~~~~~~ 286 (538)
.+. + . . ...+.+++|+|.++.+.. ....+|+++|||||++|||++|+ |+|+|+.+|+.+++.++++
T Consensus 525 ~~gd~t~p~s~~~ll~~~~~d~aVlE~s~~~il~~gl~~~~pdvaVvTNI~~DHL~~~~~~t~E~~~~~K~~i~~~v~~~ 604 (727)
T PRK14016 525 DKGDCTGPKSARRVLMNPDVEAAVLETARGGILREGLAYDRCDVGVVTNIGEDHLGLGGINTLEDLAKVKRVVVEAVKPD 604 (727)
T ss_pred ccccccCHHHHHHHhcCCCCCEEEEEcCCCchhhcCCcccccCeEEEcCCCHHHhhccCCCCHHHHHHHHHHHHhhhCCC
Confidence 000 0 0 0 123458999999865542 22358999999999999999875 9999999999999988889
Q ss_pred cEEEEcCCCHHHHHHHHHhhhhcCccccCCcccccCcccccCCCCceEEEeeccCCCcceEeeeeec-----CCCCeEEE
Q 009293 287 GHLVICGDSQCARSLLDQIKQDTGLKYSGGVVSNQSSDLWGQGHDYKIITYGFSSFNDWYAESVCPN-----VQGGSDYI 361 (538)
Q Consensus 287 ~~~Vln~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~d~~~~~i~~~-----~~~g~~f~ 361 (538)
+.+|+|.||+.+..+..... .++++|+.++..++...++... ..++ .+.
T Consensus 605 g~aVlNaDD~~~~~~~~~~~-------------------------~~vi~fs~~~~~~~~~~~~~~~~~~~~~~~~-~i~ 658 (727)
T PRK14016 605 GYAVLNADDPMVAAMAERCK-------------------------GKVIFFSMDPDNPVIAEHRAQGGRAVYVEGD-YIV 658 (727)
T ss_pred CeEEEcCCCHHHHHHHHhCC-------------------------CcEEEEeCCCCChHHHHHHHhCCceEEEeCC-EEE
Confidence 99999999998877654321 3567777654333222111100 0011 111
Q ss_pred EEECCee-----eeEEEeCCCc--hhHHHHHHHHHHHHHHhcCCccCCcccHHHHHHHhccCCC----CCCceEE
Q 009293 362 LCERGRP-----LAQISLQIPG--VHNVLNSLAVIATVLTLIGDKRQSHESIACLKLPLSKFMG----VSRRFDL 425 (538)
Q Consensus 362 ~~~~~~~-----~~~~~l~l~G--~hnv~NalaAia~a~~lgi~~~~~~~~~~~I~~~L~~f~~----~~gR~E~ 425 (538)
+..+... ...+.+.++| .||++|+++|+|+|+.+|++ .+.|+++|++|++ .||||+.
T Consensus 659 ~~~g~~~~~~~~~~~i~l~~~G~~~hnv~NalAAiAaa~~lGi~-------~~~I~~~L~sF~~~~~~~pGR~n~ 726 (727)
T PRK14016 659 LAEGGWEIRIISLADIPLTLGGKAGFNIENALAAIAAAWALGID-------IELIRAGLRTFVSDAAQAPGRFNL 726 (727)
T ss_pred EEeCCcceeeccccccceecCCcchhhHHHHHHHHHHHHHcCCC-------HHHHHHHHHhcCCCccCCCccccc
Confidence 1111110 0123444466 79999999999999999998 8999999999986 9999985
No 44
>KOG2525 consensus Folylpolyglutamate synthase [Coenzyme transport and metabolism]
Probab=99.95 E-value=1.2e-26 Score=238.27 Aligned_cols=274 Identities=17% Similarity=0.149 Sum_probs=190.4
Q ss_pred HHHHHH--hcCCcEEEEeCCCCchHHHHHHHHHHHHcCCCeEEEeCCCCCCCCCC------cc-----------------
Q 009293 172 YWLAKL--TEKYNLIAVSGSHGKSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDG------SI----------------- 226 (538)
Q Consensus 172 ~~l~~~--~~~~~vI~VTGTnGKTTTt~ml~~iL~~~G~~v~~~~g~~~~~~~~~------~~----------------- 226 (538)
+.+++| +.++.+|||+|||||+|||+++++||++.|++++.++++++-..... .+
T Consensus 61 ~~lg~p~d~~~l~iIHVAGTkGKGStcaF~~SILr~~g~rtG~yTSPHLl~vrErIriNGqpIS~e~F~~~f~~v~~~lk 140 (496)
T KOG2525|consen 61 ERLGNPEDQNSLNIIHVAGTKGKGSTCAFTESILRQQGLRTGFYTSPHLLSVRERIRINGQPISEEKFTKYFWEVYERLK 140 (496)
T ss_pred HHhCChhhhhheeEEEEecCCCCcchHHHHHHHHHhcccccccccChhhcchhheEEECCEECCHHHHHHHHHHHHHHHH
Confidence 455666 66789999999999999999999999999999999999876432110 00
Q ss_pred ------------------------ccCCCcEEEEee---cCcceeeccccCcEEEEcCCCccccccCCC-HHHHHHHHHH
Q 009293 227 ------------------------FYGGGKNFVLEA---DEYDGCFLGLSPSVAVVTNLDWEHVDIFED-EDAVKSIFRR 278 (538)
Q Consensus 227 ------------------------~~~~~~~~VlE~---~~~d~~~~~~~p~vaVITNI~~DHld~~gs-~e~~~~~k~~ 278 (538)
...+.+++|+|. +++|.....-+|-++.||+|+.||++++|+ +++|+..|+.
T Consensus 141 ~~~~~~~~~p~yF~fLT~lAF~~F~~enVdvaViEvGlGG~~DaTNvI~kpvvcgITslG~DH~~~LG~tL~eIA~eKAG 220 (496)
T KOG2525|consen 141 STKLKEVSMPTYFEFLTLLAFHVFVKENVDVAVIEVGLGGELDATNVIEKPVVCGITSLGLDHTSFLGNTLSEIAWEKAG 220 (496)
T ss_pred HhhccccCCCchhhhhHhhhheeeeecCCcEEEEEeccccccccccccccceEEEEeecCCchHHHHhhHHHHHHHHhcc
Confidence 001345677885 578887766899999999999999999995 5777766655
Q ss_pred HhhcccCCcEEEEcCCCHHHHHHHHHhhhhcCccccCCcccccCcccccCCCCceEEEeeccCCCcceEeeeeecCCCCe
Q 009293 279 FLKQIRVGGHLVICGDSQCARSLLDQIKQDTGLKYSGGVVSNQSSDLWGQGHDYKIITYGFSSFNDWYAESVCPNVQGGS 358 (538)
Q Consensus 279 ~~~~~~~~~~~Vln~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~d~~~~~i~~~~~~g~ 358 (538)
+ .+++.+++...+++.+..++++.++... +.. +-..+. .
T Consensus 221 I---fK~gvpaft~~q~~e~~nvL~~ra~e~~---------------------~~L--~~v~p~---------------~ 259 (496)
T KOG2525|consen 221 I---FKEGVPAFTVPQPPEALNVLKERASELG---------------------VPL--FVVPPL---------------E 259 (496)
T ss_pred c---cccCCceEEcCCcHHHHHHHHHHHHhcC---------------------CCc--eecCCc---------------h
Confidence 4 5778888888888888888877664321 110 000000 0
Q ss_pred EEEEEECCeeeeEEEeCCCchhHHHHHHHHHHHHHHhc---------CCccCCcc--cHHHHHHHhccCCCCCCceEEEe
Q 009293 359 DYILCERGRPLAQISLQIPGVHNVLNSLAVIATVLTLI---------GDKRQSHE--SIACLKLPLSKFMGVSRRFDLIG 427 (538)
Q Consensus 359 ~f~~~~~~~~~~~~~l~l~G~hnv~NalaAia~a~~lg---------i~~~~~~~--~~~~I~~~L~~f~~~~gR~E~v~ 427 (538)
.+. +....+.+.|.||..|+.+|+.++...- .+...... -+.....||+++. ||||.|++.
T Consensus 260 ~~~-------ls~~~lgl~g~hq~~na~lA~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~GL~~~~-wPGR~qil~ 331 (496)
T KOG2525|consen 260 AYE-------LSGVNLGLIGTHQWSNASLAVQLASEWLIQNGRVAEGVLDALQTSGLIPPAFLSGLASTD-WPGRLQILE 331 (496)
T ss_pred hhh-------hcCCcccccccchhhhhHHHHHHHHHHHHhcCcccccCCCccccccCCCHHHhcchhhcc-CCCceEEEe
Confidence 000 1123377899999999999999987532 11100000 1355667999998 999999998
Q ss_pred eeCCeEEEEECCCCHHHHHHHHHHHHh-hC--CCCe-EEEEEccCCCCchHHH-HHHHHH---HhccCCEEEEecc
Q 009293 428 TIYGCHIYDDFAHHPTEVRAVLQAARQ-RF--PNKA-LIAVFQPHTYSRLVVL-KDDFAN---ALSEADQVVVSAV 495 (538)
Q Consensus 428 ~~~g~~ii~D~Ahnp~s~~a~l~~l~~-~~--~~~r-~i~V~g~~~~~r~~~~-~~~~~~---~~~~~D~vi~~~~ 495 (538)
...+..++.|+||||+||+++.+++++ .+ +..+ +|++|.+++ .++... .+.+.. ..-.++.|++++.
T Consensus 332 ~~~~~~~llDGAHt~eSaea~~~w~~~~~~~~~~~~~~illfn~t~-~~d~~~Ll~~L~~~~~~~~~F~~Vvf~Pn 406 (496)
T KOG2525|consen 332 YGRGVTWLLDGAHTKESAEACAKWFRKAVRGLKKLTSLILLFNCTS-DRDPPLLLPLLKPDAVIGTRFSSVVFMPN 406 (496)
T ss_pred cCCCcEEEecCCCCHHHHHHHHHHHHHHhccCCCccceEEEEEecC-CcchHhHhHHhccccccccccceEEeccc
Confidence 657899999999999999999999997 32 2223 588898765 444332 222222 1125788888775
No 45
>PF02875 Mur_ligase_C: Mur ligase family, glutamate ligase domain This Prosite entry is a subset of the Pfam family.; InterPro: IPR004101 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) [], MurD (6.3.2.9 from EC) [], MurE (6.3.2.13 from EC) [] and MurF (6.3.2.10 from EC) []. These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales []. This entry represents the C-terminal domain from all four stage 2 Mur enzymes: UDP-N-acetylmuramate-L-alanine ligase (MurC), UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (MurE), and UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF). This entry also includes the C-terminal domain of folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate and cyanophycin synthetase that catalyses the biosynthesis of the cyanobacterial reserve material multi-L-arginyl-poly-L-aspartate (cyanophycin) []. The C-terminal domain is almost always associated with the cytoplasmic peptidoglycan synthetases, N-terminal domain (see IPR000713 from INTERPRO).; GO: 0005524 ATP binding, 0016874 ligase activity, 0009058 biosynthetic process; PDB: 2Y68_A 3UAG_A 4UAG_A 2UAG_A 1E0D_A 2XPC_A 2WJP_A 2VTE_A 2Y67_A 1EEH_A ....
Probab=99.52 E-value=4.6e-14 Score=117.70 Aligned_cols=81 Identities=26% Similarity=0.425 Sum_probs=68.2
Q ss_pred CCCceEEEeeeCCeEEEEECCCCHHHHHHHHHHHHhhCCCCeEEEEEccCC--CCchHHHHHHHHHHhcc-CCEEEEecc
Q 009293 419 VSRRFDLIGTIYGCHIYDDFAHHPTEVRAVLQAARQRFPNKALIAVFQPHT--YSRLVVLKDDFANALSE-ADQVVVSAV 495 (538)
Q Consensus 419 ~~gR~E~v~~~~g~~ii~D~Ahnp~s~~a~l~~l~~~~~~~r~i~V~g~~~--~~r~~~~~~~~~~~~~~-~D~vi~~~~ 495 (538)
||||||++...+++++|+||||||+|++++++++++.++.+|+++|||+.. ++++.+....+.+.+.. +|.+++++.
T Consensus 1 vpgR~e~v~~~~~~~vi~D~ahNp~s~~a~l~~l~~~~~~~~~i~V~G~~~d~g~~~~~~~~~~~~~~~~~~d~vi~~~~ 80 (91)
T PF02875_consen 1 VPGRMEVVREPNGPTVIDDYAHNPDSIRALLEALKELYPKGRIIAVFGAMGDLGSKDKDFHEEIGELAAQLADVVILTGD 80 (91)
T ss_dssp ETTSSEEEEEETTEEEEEET--SHHHHHHHHHHHHHHCTTSEEEEEEEEBTT-HTSHHHCHHHHHHHHTTCSSEEEEETS
T ss_pred CCCCcEEEeeCCCcEEEEECCCCHHHHHHHHHHHHHhccCCcEEEEEccccccccccHHHHHHHHHHHHhcCCEEEEcCC
Confidence 799999999778999999999999999999999999888899999999744 24667777788887764 899999988
Q ss_pred CCCC
Q 009293 496 LVFW 499 (538)
Q Consensus 496 ~~~~ 499 (538)
++++
T Consensus 81 ~~r~ 84 (91)
T PF02875_consen 81 NPRA 84 (91)
T ss_dssp BTTT
T ss_pred CCCC
Confidence 7766
No 46
>PF01225 Mur_ligase: Mur ligase family, catalytic domain This Prosite entry is a subset of the Pfam family.; InterPro: IPR000713 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) [], MurD (6.3.2.9 from EC) [], MurE (6.3.2.13 from EC) [] and MurF (6.3.2.10 from EC) []. These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales []. This entry represents the N-terminal domain of several stage 2 Mur ligases, including: UDP-N-acetylmuramate-L-alanine ligase (MurC), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (MurE), and UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF). This entry also includes folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate and cyanophycin synthetase that catalyses the biosynthesis of the cyanobacterial reserve material multi-L-arginyl-poly-L-aspartate (cyanophycin) []. The N-terminal domain is almost always associated with the cytoplasmic peptidoglycan synthetases C-terminal domain (see IPR004101 from INTERPRO).; GO: 0005524 ATP binding, 0009058 biosynthetic process; PDB: 2XJA_A 2WTZ_A 1E8C_A 3HN7_A 3EAG_A 1J6U_A 2AM2_A 2AM1_A 2F00_B 1GQY_B ....
Probab=97.94 E-value=7.3e-05 Score=60.88 Aligned_cols=79 Identities=27% Similarity=0.310 Sum_probs=66.0
Q ss_pred eEEEEeechhhHHHHHHHHHhCCCcEEEecCCCChhHHHHHHCCCeEEeCCCCCCcCCCCCCCCCCEEEEcCCCCCCCHH
Q 009293 77 WIHFVGIGGSGLSALAKLALKQGFEVSGSDLVWSSYMEGLLEAGANLHIGHSVSNIQGNDGSRFPNAVVASSAIPQDNVE 156 (538)
Q Consensus 77 ~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~d~vvvsp~i~~~~~~ 156 (538)
+|+.|+++..++.+.+.|++.+|++++||| |+.++.++|+.+++++... + ++.+++.
T Consensus 1 ~i~~i~~dSr~v~~g~lF~a~~G~~~dG~~-----fi~~a~~~Ga~~~~~~~~~-----------------~-~~~~~~~ 57 (83)
T PF01225_consen 1 HIHGISIDSRKVSPGALFFAIKGERVDGHD-----FIEDAIAKGAAAVVVDKDA-----------------S-ISPDNPE 57 (83)
T ss_dssp EEEEEETTSGGHHHHHHHHHHTTSEEEEEC-----SCHHHHHTT-EEEESSSGG-----------------T-STTTSHH
T ss_pred CEEEEEECcCccChhHEEEEcCCccccchh-----hhhHHHHCCCeEEEEcCcc-----------------c-cccccHh
Confidence 467889999999999999999999999999 9999999999999875532 3 5567888
Q ss_pred HHHHHHCCCCeeeHHHHHHHHh
Q 009293 157 ILHAKSVGVPIYKRDYWLAKLT 178 (538)
Q Consensus 157 l~~a~~~gi~vi~~~~~l~~~~ 178 (538)
+..+....+++-...++++...
T Consensus 58 ~~~~~~~~i~v~~~~~~L~~la 79 (83)
T PF01225_consen 58 VPAADVPVIPVEDTRQALGELA 79 (83)
T ss_dssp HHHHHHTTEEEEEHHHHHHHHH
T ss_pred HHhcCCCEEEECCHHHHHHHHH
Confidence 8888888888888888887664
No 47
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=97.51 E-value=0.00024 Score=68.33 Aligned_cols=125 Identities=19% Similarity=0.147 Sum_probs=80.0
Q ss_pred hhcCCCceEEEEeechhhHHHHHHHHHhCCCcEEEecCCCChhHHHHHHCC-CeEEeCCCC-CCcCCCCCCCCCCEEEEc
Q 009293 70 DFKNRKGWIHFVGIGGSGLSALAKLALKQGFEVSGSDLVWSSYMEGLLEAG-ANLHIGHSV-SNIQGNDGSRFPNAVVAS 147 (538)
Q Consensus 70 ~~~~~~~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~~~~~~~~~~G-a~~~~~~~~-~~~~~~~~~~~~d~vvvs 147 (538)
++++ ++|+|+|.|.+|...+ +.|...|++|++.+....+.+..+.+.| +.++.+... .++ ..+++||.+
T Consensus 6 ~l~g--k~vlVvGgG~va~rk~-~~Ll~~ga~VtVvsp~~~~~l~~l~~~~~i~~~~~~~~~~dl------~~~~lVi~a 76 (205)
T TIGR01470 6 NLEG--RAVLVVGGGDVALRKA-RLLLKAGAQLRVIAEELESELTLLAEQGGITWLARCFDADIL------EGAFLVIAA 76 (205)
T ss_pred EcCC--CeEEEECcCHHHHHHH-HHHHHCCCEEEEEcCCCCHHHHHHHHcCCEEEEeCCCCHHHh------CCcEEEEEC
Confidence 3445 5799999999998864 5666799999999866555566666665 333333222 223 268999999
Q ss_pred CCCC-CCCHHHHHHHHCCCCe--eeHHHHHHH--H---hcCCcEEEEeCCCCchHH-HHHHHHHHH
Q 009293 148 SAIP-QDNVEILHAKSVGVPI--YKRDYWLAK--L---TEKYNLIAVSGSHGKSTT-ASMLAYVLK 204 (538)
Q Consensus 148 p~i~-~~~~~l~~a~~~gi~v--i~~~~~l~~--~---~~~~~vI~VTGTnGKTTT-t~ml~~iL~ 204 (538)
|+.+ .+.+....|++.++++ .+++++..- | ....-+|+|+ |+||+=. +..+..-++
T Consensus 77 t~d~~ln~~i~~~a~~~~ilvn~~d~~e~~~f~~pa~~~~g~l~iais-T~G~sP~la~~lr~~ie 141 (205)
T TIGR01470 77 TDDEELNRRVAHAARARGVPVNVVDDPELCSFIFPSIVDRSPVVVAIS-SGGAAPVLARLLRERIE 141 (205)
T ss_pred CCCHHHHHHHHHHHHHcCCEEEECCCcccCeEEEeeEEEcCCEEEEEE-CCCCCcHHHHHHHHHHH
Confidence 9987 4556777788889988 555543211 1 1123467777 8887743 333443333
No 48
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=95.38 E-value=0.041 Score=52.76 Aligned_cols=125 Identities=20% Similarity=0.097 Sum_probs=69.3
Q ss_pred hhcCCCceEEEEeechhhHHHHHHHHHhCCCcEEEecCCCChhHHHHHHCCCeEEeCC--CCCCcCCCCCCCCCCEEEEc
Q 009293 70 DFKNRKGWIHFVGIGGSGLSALAKLALKQGFEVSGSDLVWSSYMEGLLEAGANLHIGH--SVSNIQGNDGSRFPNAVVAS 147 (538)
Q Consensus 70 ~~~~~~~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~~~~~~~~~~Ga~~~~~~--~~~~~~~~~~~~~~d~vvvs 147 (538)
++.+ ++|+|+|.|..|... +..|...|++|...+....+.+.++.+.|....... .+.++ ..+|+||..
T Consensus 7 ~l~~--k~vLVIGgG~va~~k-a~~Ll~~ga~V~VIs~~~~~~l~~l~~~~~i~~~~~~~~~~~l------~~adlViaa 77 (202)
T PRK06718 7 DLSN--KRVVIVGGGKVAGRR-AITLLKYGAHIVVISPELTENLVKLVEEGKIRWKQKEFEPSDI------VDAFLVIAA 77 (202)
T ss_pred EcCC--CEEEEECCCHHHHHH-HHHHHHCCCeEEEEcCCCCHHHHHHHhCCCEEEEecCCChhhc------CCceEEEEc
Confidence 3445 679999999999875 456666899999887544444555555543222211 11222 257888887
Q ss_pred CCCCCCCHHHHHHHHCCCCeeeH--HHH--HHHH---hcCCcEEEEeCCCCchHH-HHHHHHHHH
Q 009293 148 SAIPQDNVEILHAKSVGVPIYKR--DYW--LAKL---TEKYNLIAVSGSHGKSTT-ASMLAYVLK 204 (538)
Q Consensus 148 p~i~~~~~~l~~a~~~gi~vi~~--~~~--l~~~---~~~~~vI~VTGTnGKTTT-t~ml~~iL~ 204 (538)
.+-+..|..+....+.++.+-.. ++. +.-| ....-+|+|+ |+||+=+ +..|..-++
T Consensus 78 T~d~elN~~i~~~a~~~~lvn~~d~~~~~~f~~Pa~~~~g~l~iaIs-T~G~sP~la~~lr~~ie 141 (202)
T PRK06718 78 TNDPRVNEQVKEDLPENALFNVITDAESGNVVFPSALHRGKLTISVS-TDGASPKLAKKIRDELE 141 (202)
T ss_pred CCCHHHHHHHHHHHHhCCcEEECCCCccCeEEEeeEEEcCCeEEEEE-CCCCChHHHHHHHHHHH
Confidence 76555555554444445544321 111 0011 1123478887 8888643 334444443
No 49
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=95.01 E-value=0.1 Score=49.33 Aligned_cols=115 Identities=21% Similarity=0.262 Sum_probs=68.1
Q ss_pred eEEEEeechhhHHHHHHHHHhCCCcEEEecCCCC--------------hhHHHHHHC---CCeEEeCCCCCC-cCCCCCC
Q 009293 77 WIHFVGIGGSGLSALAKLALKQGFEVSGSDLVWS--------------SYMEGLLEA---GANLHIGHSVSN-IQGNDGS 138 (538)
Q Consensus 77 ~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~--------------~~~~~~~~~---Ga~~~~~~~~~~-~~~~~~~ 138 (538)
+|.|+|+|-.|... |..|+.+|++|.|.|.+.. +.++++.+. +-.+....+... +.
T Consensus 2 ~I~ViGlGyvGl~~-A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~----- 75 (185)
T PF03721_consen 2 KIAVIGLGYVGLPL-AAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIK----- 75 (185)
T ss_dssp EEEEE--STTHHHH-HHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHH-----
T ss_pred EEEEECCCcchHHH-HHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhhhh-----
Confidence 58999999999975 7888999999999997521 122332221 112222222111 21
Q ss_pred CCCCEEEEcCCCCC------CCHHHHHHHHCCCCeeeHHHHHHHHhcCCcEEEEeCCCCchHHHHHHHHHHHHcCC
Q 009293 139 RFPNAVVASSAIPQ------DNVEILHAKSVGVPIYKRDYWLAKLTEKYNLIAVSGSHGKSTTASMLAYVLKAMGD 208 (538)
Q Consensus 139 ~~~d~vvvsp~i~~------~~~~l~~a~~~gi~vi~~~~~l~~~~~~~~vI~VTGTnGKTTTt~ml~~iL~~~G~ 208 (538)
..|++++...-|. +...+..| .+.+....++..+|.+-=|--=+||-.++..+|++.+.
T Consensus 76 -~adv~~I~VpTP~~~~~~~Dls~v~~a----------~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~~ 140 (185)
T PF03721_consen 76 -DADVVFICVPTPSDEDGSPDLSYVESA----------IESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRSG 140 (185)
T ss_dssp -H-SEEEE----EBETTTSBETHHHHHH----------HHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHCC
T ss_pred -ccceEEEecCCCccccCCccHHHHHHH----------HHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhcc
Confidence 4688888765543 22334444 23444444566899999999999999999999998774
No 50
>PRK04148 hypothetical protein; Provisional
Probab=94.97 E-value=0.12 Score=45.96 Aligned_cols=88 Identities=20% Similarity=0.175 Sum_probs=54.6
Q ss_pred ceEEEEeechhhHHHHHHHHHhCCCcEEEecCCCChhHHHHHHCCCeEEeCCC-CCCcCCCCCCCCCCEEEE-cCCCCCC
Q 009293 76 GWIHFVGIGGSGLSALAKLALKQGFEVSGSDLVWSSYMEGLLEAGANLHIGHS-VSNIQGNDGSRFPNAVVA-SSAIPQD 153 (538)
Q Consensus 76 ~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~~~~~~~~~~Ga~~~~~~~-~~~~~~~~~~~~~d~vvv-sp~i~~~ 153 (538)
++|++||.| +|.+. |..|+..|++|.+.|.++. .++.+.+.+..++.++- ..++. .-..+|+|.- .|...-.
T Consensus 18 ~kileIG~G-fG~~v-A~~L~~~G~~ViaIDi~~~-aV~~a~~~~~~~v~dDlf~p~~~---~y~~a~liysirpp~el~ 91 (134)
T PRK04148 18 KKIVELGIG-FYFKV-AKKLKESGFDVIVIDINEK-AVEKAKKLGLNAFVDDLFNPNLE---IYKNAKLIYSIRPPRDLQ 91 (134)
T ss_pred CEEEEEEec-CCHHH-HHHHHHCCCEEEEEECCHH-HHHHHHHhCCeEEECcCCCCCHH---HHhcCCEEEEeCCCHHHH
Confidence 569999999 88764 7788889999999997654 35667778888877522 11111 1125677654 2211112
Q ss_pred CHHHHHHHHCCCCeee
Q 009293 154 NVEILHAKSVGVPIYK 169 (538)
Q Consensus 154 ~~~l~~a~~~gi~vi~ 169 (538)
.+.+..|++.|++++=
T Consensus 92 ~~~~~la~~~~~~~~i 107 (134)
T PRK04148 92 PFILELAKKINVPLII 107 (134)
T ss_pred HHHHHHHHHcCCCEEE
Confidence 2344455666665544
No 51
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=93.96 E-value=0.34 Score=44.98 Aligned_cols=117 Identities=21% Similarity=0.145 Sum_probs=64.4
Q ss_pred ceEEEEeechh-hHHHHHHHHHhCCCcEEEecCCCChhHHHHHHCCCeEEeC--CCCCCcCCCCCCCCCCEEEEcCCCCC
Q 009293 76 GWIHFVGIGGS-GLSALAKLALKQGFEVSGSDLVWSSYMEGLLEAGANLHIG--HSVSNIQGNDGSRFPNAVVASSAIPQ 152 (538)
Q Consensus 76 ~~v~vlG~G~s-G~~~la~~l~~~G~~v~g~D~~~~~~~~~~~~~Ga~~~~~--~~~~~~~~~~~~~~~d~vvvsp~i~~ 152 (538)
++|+|+|.|.. |.. +|.+|..+|.+|...+.+.++..+.+. .+.+++. ..+.-+.. ... ....+++.-++|+
T Consensus 45 k~vlViG~G~~~G~~-~a~~L~~~g~~V~v~~r~~~~l~~~l~--~aDiVIsat~~~~ii~~-~~~-~~~~viIDla~pr 119 (168)
T cd01080 45 KKVVVVGRSNIVGKP-LAALLLNRNATVTVCHSKTKNLKEHTK--QADIVIVAVGKPGLVKG-DMV-KPGAVVIDVGINR 119 (168)
T ss_pred CEEEEECCcHHHHHH-HHHHHhhCCCEEEEEECCchhHHHHHh--hCCEEEEcCCCCceecH-HHc-cCCeEEEEccCCC
Confidence 67999999986 664 578888899999988865332222232 3444332 22111110 000 2347888888877
Q ss_pred CCHHHHHHHHCCCCeeeHHHHHHHHhcCCcEEEEeCC---CCchHHHHHHHHHHHHc
Q 009293 153 DNVEILHAKSVGVPIYKRDYWLAKLTEKYNLIAVSGS---HGKSTTASMLAYVLKAM 206 (538)
Q Consensus 153 ~~~~l~~a~~~gi~vi~~~~~l~~~~~~~~vI~VTGT---nGKTTTt~ml~~iL~~~ 206 (538)
+-. +.+..+....++-... + ..+.+|++ -|+=|+..++.++++.+
T Consensus 120 dvd------~~~~~~~G~~d~~~~~--~-~~~~~~~~pggvgp~t~a~l~~n~~~~~ 167 (168)
T cd01080 120 VPD------KSGGKLVGDVDFESAK--E-KASAITPVPGGVGPMTVAMLMKNTVEAA 167 (168)
T ss_pred ccc------ccCCCeeCCcCHHHHH--h-hccCcCCCCCcChHHHHHHHHHHHHHHh
Confidence 422 1112233322211111 1 14445555 77889999999988764
No 52
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=93.45 E-value=0.21 Score=45.85 Aligned_cols=122 Identities=14% Similarity=0.053 Sum_probs=64.6
Q ss_pred hhcCCCceEEEEeechhhHHHHHHHHHhCCCcEEEecCCCChhHHHHHHCC-CeEEeC-CCCCCcCCCCCCCCCCEEEEc
Q 009293 70 DFKNRKGWIHFVGIGGSGLSALAKLALKQGFEVSGSDLVWSSYMEGLLEAG-ANLHIG-HSVSNIQGNDGSRFPNAVVAS 147 (538)
Q Consensus 70 ~~~~~~~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~~~~~~~~~~G-a~~~~~-~~~~~~~~~~~~~~~d~vvvs 147 (538)
++.+ ++|+|+|.|..|..- ++.|...|++|...+.. ..+++.+.+ +.+... ..+.++ ..+|+|+..
T Consensus 10 ~l~~--~~vlVvGGG~va~rk-a~~Ll~~ga~V~VIsp~---~~~~l~~l~~i~~~~~~~~~~dl------~~a~lViaa 77 (157)
T PRK06719 10 NLHN--KVVVIIGGGKIAYRK-ASGLKDTGAFVTVVSPE---ICKEMKELPYITWKQKTFSNDDI------KDAHLIYAA 77 (157)
T ss_pred EcCC--CEEEEECCCHHHHHH-HHHHHhCCCEEEEEcCc---cCHHHHhccCcEEEecccChhcC------CCceEEEEC
Confidence 4455 679999999988764 56666799999988632 333444433 222211 111222 257888887
Q ss_pred CCCCCCCHHHHHHHHCCCCee--eHHHH--HHHH---hcCCcEEEEeCCCCchH-HHHHHHHHHH
Q 009293 148 SAIPQDNVEILHAKSVGVPIY--KRDYW--LAKL---TEKYNLIAVSGSHGKST-TASMLAYVLK 204 (538)
Q Consensus 148 p~i~~~~~~l~~a~~~gi~vi--~~~~~--l~~~---~~~~~vI~VTGTnGKTT-Tt~ml~~iL~ 204 (538)
..-+..|..+....+.+.++- ..++. +..| ...--+|+|+ |+||+= .+..|..-++
T Consensus 78 T~d~e~N~~i~~~a~~~~~vn~~d~~~~~~f~~pa~v~~~~l~iais-T~G~sP~la~~lr~~ie 141 (157)
T PRK06719 78 TNQHAVNMMVKQAAHDFQWVNVVSDGTESSFHTPGVIRNDEYVVTIS-TSGKDPSFTKRLKQELT 141 (157)
T ss_pred CCCHHHHHHHHHHHHHCCcEEECCCCCcCcEEeeeEEEECCeEEEEE-CCCcChHHHHHHHHHHH
Confidence 655555554443333333332 11111 0011 1123478887 889863 3344444433
No 53
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=93.31 E-value=0.16 Score=51.27 Aligned_cols=68 Identities=22% Similarity=0.159 Sum_probs=45.4
Q ss_pred ceEEEEeechhhHHHHHHHHHhCCCcEEEecCCCC-hhHHHHHHCCCeEEeCCCC--CCcCCCCCCCCCCEEEEcCCC
Q 009293 76 GWIHFVGIGGSGLSALAKLALKQGFEVSGSDLVWS-SYMEGLLEAGANLHIGHSV--SNIQGNDGSRFPNAVVASSAI 150 (538)
Q Consensus 76 ~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~-~~~~~~~~~Ga~~~~~~~~--~~~~~~~~~~~~d~vvvsp~i 150 (538)
.+|.|+|+|..|.+ +|+.|+.+|+.|.+.+.... ...+.+.+.|+.-...... ... ..+|+||++.-+
T Consensus 4 ~~v~IvG~GliG~s-~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~------~~aD~VivavPi 74 (279)
T COG0287 4 MKVGIVGLGLMGGS-LARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAEAA------AEADLVIVAVPI 74 (279)
T ss_pred cEEEEECCchHHHH-HHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccccchhhhhc------ccCCEEEEeccH
Confidence 56899999999998 69999999999966654322 2344555667654432221 111 257999998643
No 54
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=93.16 E-value=0.34 Score=44.60 Aligned_cols=119 Identities=20% Similarity=0.097 Sum_probs=64.5
Q ss_pred ceEEEEeechhhHHHHHHHHHhCCCcEEEecCCCChhHHHHHHCCCeEEe--CCCCCCcCCCCCCCCCCEEEEcCCCCCC
Q 009293 76 GWIHFVGIGGSGLSALAKLALKQGFEVSGSDLVWSSYMEGLLEAGANLHI--GHSVSNIQGNDGSRFPNAVVASSAIPQD 153 (538)
Q Consensus 76 ~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~~~~~~~~~~Ga~~~~--~~~~~~~~~~~~~~~~d~vvvsp~i~~~ 153 (538)
+++.|+|-+..--..++.+|..+|+.|+..+.+.....+... .+.+++ .-.+..+.. ++ -+++.+|+..|+...
T Consensus 37 k~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T~~l~~~~~--~ADIVVsa~G~~~~i~~-~~-ik~gavVIDvG~~~~ 112 (160)
T PF02882_consen 37 KKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKTKNLQEITR--RADIVVSAVGKPNLIKA-DW-IKPGAVVIDVGINYV 112 (160)
T ss_dssp -EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTSSSHHHHHT--TSSEEEE-SSSTT-B-G-GG-S-TTEEEEE--CEEE
T ss_pred CEEEEECCcCCCChHHHHHHHhCCCeEEeccCCCCcccceee--eccEEeeeecccccccc-cc-ccCCcEEEecCCccc
Confidence 668999998644445789999999999988754322222232 344433 222222221 11 146788888887544
Q ss_pred CHHHHHHHHCCCCeeeHHHHHHHHhcCCcEEEEeCCCCchHHHHHHHHHHHHc
Q 009293 154 NVEILHAKSVGVPIYKRDYWLAKLTEKYNLIAVSGSHGKSTTASMLAYVLKAM 206 (538)
Q Consensus 154 ~~~l~~a~~~gi~vi~~~~~l~~~~~~~~vI~VTGTnGKTTTt~ml~~iL~~~ 206 (538)
..+-.+..+.++-.-..+...+.=|-|--|+=|++.++..+++.+
T Consensus 113 --------~~~~~~~GDv~~~~~~~~a~~itPvPgGVGplT~a~L~~N~v~a~ 157 (160)
T PF02882_consen 113 --------PGDGKLVGDVDFESVKEKASAITPVPGGVGPLTVAMLMKNLVKAA 157 (160)
T ss_dssp --------TTTTEEEESB-HHHHHTTCSEEE-SSSSCHHHHHHHHHHHHHHHH
T ss_pred --------cccceeeecccHHHhhccceEEeeCCCCccHHHHHHHHHHHHHHH
Confidence 223344554443322222233444558899999999999999864
No 55
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=92.91 E-value=0.33 Score=49.44 Aligned_cols=66 Identities=12% Similarity=0.127 Sum_probs=43.0
Q ss_pred CceEEEEeechhhHHHHHHHHHhCCCcEEEecCCCChhHHHHHHCCCeEEeCCCCCCcCCCCCCCCCCEEEEc
Q 009293 75 KGWIHFVGIGGSGLSALAKLALKQGFEVSGSDLVWSSYMEGLLEAGANLHIGHSVSNIQGNDGSRFPNAVVAS 147 (538)
Q Consensus 75 ~~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~d~vvvs 147 (538)
.++++|+|.|+.|+.+ +..|+..|.+|.++|.+... ...+.+.|+....-...... ...+|+||..
T Consensus 152 g~kvlViG~G~iG~~~-a~~L~~~Ga~V~v~~r~~~~-~~~~~~~G~~~~~~~~l~~~-----l~~aDiVI~t 217 (296)
T PRK08306 152 GSNVLVLGFGRTGMTL-ARTLKALGANVTVGARKSAH-LARITEMGLSPFHLSELAEE-----VGKIDIIFNT 217 (296)
T ss_pred CCEEEEECCcHHHHHH-HHHHHHCCCEEEEEECCHHH-HHHHHHcCCeeecHHHHHHH-----hCCCCEEEEC
Confidence 4679999999999986 56667789999999865332 33455667764321111111 1257888875
No 56
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=92.91 E-value=0.8 Score=45.76 Aligned_cols=120 Identities=21% Similarity=0.068 Sum_probs=71.5
Q ss_pred ceEEEEeechhhHHHHHHHHHhCCCcEEEecCCCChhHHHHHHCCCeEEeCCCCCCcCCCCCCCCCCEEEEcCCCCCCCH
Q 009293 76 GWIHFVGIGGSGLSALAKLALKQGFEVSGSDLVWSSYMEGLLEAGANLHIGHSVSNIQGNDGSRFPNAVVASSAIPQDNV 155 (538)
Q Consensus 76 ~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~d~vvvsp~i~~~~~ 155 (538)
+++.|||-+....-.++.+|...++.|+..............+..+.+...-.+..+.. ++- .+..+|+..|+.+...
T Consensus 157 k~~vVVGrS~iVGkPla~lL~~~naTVtvcHs~T~~l~~~~k~ADIvv~AvG~p~~i~~-d~v-k~gavVIDVGinrv~~ 234 (283)
T COG0190 157 KNVVVVGRSNIVGKPLALLLLNANATVTVCHSRTKDLASITKNADIVVVAVGKPHFIKA-DMV-KPGAVVIDVGINRVND 234 (283)
T ss_pred CEEEEECCCCcCcHHHHHHHHhCCCEEEEEcCCCCCHHHHhhhCCEEEEecCCcccccc-ccc-cCCCEEEecCCccccC
Confidence 56889999987767789999999999998875432222233333433332222222221 111 3567888888765431
Q ss_pred HHHHHHHCCCCeeeHHHHHHHHhcCCcEEEEeCCCCchHHHHHHHHHHHHc
Q 009293 156 EILHAKSVGVPIYKRDYWLAKLTEKYNLIAVSGSHGKSTTASMLAYVLKAM 206 (538)
Q Consensus 156 ~l~~a~~~gi~vi~~~~~l~~~~~~~~vI~VTGTnGKTTTt~ml~~iL~~~ 206 (538)
-.+.+..+|-.-..+...+-=|-|--|+=|++.++...++.+
T Consensus 235 ---------~kl~GDVdf~~v~~~a~~iTPVPGGVGPmTvamLl~Nt~~a~ 276 (283)
T COG0190 235 ---------GKLVGDVDFDSVKEKASAITPVPGGVGPMTVAMLLENTLKAA 276 (283)
T ss_pred ---------CceEeeccHHHHHHhhcccCCCCCccCHHHHHHHHHHHHHHH
Confidence 123333333221111222334559999999999999999875
No 57
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=92.77 E-value=1.7 Score=46.49 Aligned_cols=108 Identities=19% Similarity=0.193 Sum_probs=65.5
Q ss_pred ceEEEEeechhhHHHHHHHHHhCCCcEEEecCCCChhHHHHH-------------------HCCCeEEeCCCCCCcCCCC
Q 009293 76 GWIHFVGIGGSGLSALAKLALKQGFEVSGSDLVWSSYMEGLL-------------------EAGANLHIGHSVSNIQGND 136 (538)
Q Consensus 76 ~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~~~~~~~~-------------------~~Ga~~~~~~~~~~~~~~~ 136 (538)
.+|.|||+|--|.+. |..|+.+|++|.|+|.+.. .++.+. +.|...... ..
T Consensus 4 ~kI~VIGlG~~G~~~-A~~La~~G~~V~~~D~~~~-~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~----~~---- 73 (415)
T PRK11064 4 ETISVIGLGYIGLPT-AAAFASRQKQVIGVDINQH-AVDTINRGEIHIVEPDLDMVVKTAVEGGYLRATT----TP---- 73 (415)
T ss_pred cEEEEECcchhhHHH-HHHHHhCCCEEEEEeCCHH-HHHHHHCCCCCcCCCCHHHHHHHHhhcCceeeec----cc----
Confidence 469999999999874 7777889999999996532 122221 122211110 01
Q ss_pred CCCCCCEEEEcCCCCC------CCHHHHHHHHCCCCeeeHHHHHHHHhcCCcEEEEeCCCCchHHHHHHHHHHHH
Q 009293 137 GSRFPNAVVASSAIPQ------DNVEILHAKSVGVPIYKRDYWLAKLTEKYNLIAVSGSHGKSTTASMLAYVLKA 205 (538)
Q Consensus 137 ~~~~~d~vvvsp~i~~------~~~~l~~a~~~gi~vi~~~~~l~~~~~~~~vI~VTGTnGKTTTt~ml~~iL~~ 205 (538)
...|++++....|. +...+..+. +-+....++..+|.+..|..=+||..+...+.+.
T Consensus 74 --~~aDvvii~vptp~~~~~~~dl~~v~~~~----------~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~~ 136 (415)
T PRK11064 74 --EPADAFLIAVPTPFKGDHEPDLTYVEAAA----------KSIAPVLKKGDLVILESTSPVGATEQMAEWLAEA 136 (415)
T ss_pred --ccCCEEEEEcCCCCCCCCCcChHHHHHHH----------HHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHHh
Confidence 14788888765442 112333221 1122222445789999999999998887777654
No 58
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=92.73 E-value=1.4 Score=44.45 Aligned_cols=34 Identities=26% Similarity=0.444 Sum_probs=29.9
Q ss_pred CCcEEEEeCC--CCchHHHHHHHHHHHHcCCCeEEE
Q 009293 180 KYNLIAVSGS--HGKSTTASMLAYVLKAMGDDLTAI 213 (538)
Q Consensus 180 ~~~vI~VTGT--nGKTTTt~ml~~iL~~~G~~v~~~ 213 (538)
+.++|||||+ .||||...-+..-|...|++|+.+
T Consensus 50 ~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVl 85 (323)
T COG1703 50 NAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVL 85 (323)
T ss_pred CCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEE
Confidence 5679999997 579999999999999999998654
No 59
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=91.96 E-value=1.4 Score=52.02 Aligned_cols=75 Identities=23% Similarity=0.162 Sum_probs=50.0
Q ss_pred CceEEEEeechhhHHHHHHHHHhCCCcEEEecCCC----------C----------hhHHHHHHCCCeEEeCCCC-CCcC
Q 009293 75 KGWIHFVGIGGSGLSALAKLALKQGFEVSGSDLVW----------S----------SYMEGLLEAGANLHIGHSV-SNIQ 133 (538)
Q Consensus 75 ~~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~----------~----------~~~~~~~~~Ga~~~~~~~~-~~~~ 133 (538)
.++|+|||.|.+|++| |..|+.+|++|++.|... + ..++.+.+.|+.+..+... .++.
T Consensus 306 gkkVaVIGsGPAGLsa-A~~Lar~G~~VtVfE~~~~~GG~l~yGIP~~rlp~~vi~~~i~~l~~~Gv~f~~n~~vG~dit 384 (944)
T PRK12779 306 KPPIAVVGSGPSGLIN-AYLLAVEGFPVTVFEAFHDLGGVLRYGIPEFRLPNQLIDDVVEKIKLLGGRFVKNFVVGKTAT 384 (944)
T ss_pred CCeEEEECCCHHHHHH-HHHHHHCCCeEEEEeeCCCCCceEEccCCCCcChHHHHHHHHHHHHhhcCeEEEeEEeccEEe
Confidence 4679999999999998 888889999999998531 0 1234566779887554211 1111
Q ss_pred CCCC-CCCCCEEEEcCCC
Q 009293 134 GNDG-SRFPNAVVASSAI 150 (538)
Q Consensus 134 ~~~~-~~~~d~vvvsp~i 150 (538)
..+. ...+|.|++..|-
T Consensus 385 ~~~l~~~~yDAV~LAtGA 402 (944)
T PRK12779 385 LEDLKAAGFWKIFVGTGA 402 (944)
T ss_pred HHHhccccCCEEEEeCCC
Confidence 0001 1258999998886
No 60
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=91.57 E-value=0.82 Score=42.04 Aligned_cols=113 Identities=27% Similarity=0.239 Sum_probs=60.7
Q ss_pred ceEEEEeechhhHHHHHHHHHhCCCcEEEecCCCChhHHHHHHCCCeEEeCCCCCCcCCCCCCCCCCEEEEcCCCCCCCH
Q 009293 76 GWIHFVGIGGSGLSALAKLALKQGFEVSGSDLVWSSYMEGLLEAGANLHIGHSVSNIQGNDGSRFPNAVVASSAIPQDNV 155 (538)
Q Consensus 76 ~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~d~vvvsp~i~~~~~ 155 (538)
.+|.|||+|.-|.. +|+-|..+|++|.++|... +-.+.+.+.|+...- .+.+.. ...|+|+... ++..
T Consensus 2 ~~Ig~IGlG~mG~~-~a~~L~~~g~~v~~~d~~~-~~~~~~~~~g~~~~~--s~~e~~-----~~~dvvi~~v---~~~~ 69 (163)
T PF03446_consen 2 MKIGFIGLGNMGSA-MARNLAKAGYEVTVYDRSP-EKAEALAEAGAEVAD--SPAEAA-----EQADVVILCV---PDDD 69 (163)
T ss_dssp BEEEEE--SHHHHH-HHHHHHHTTTEEEEEESSH-HHHHHHHHTTEEEES--SHHHHH-----HHBSEEEE-S---SSHH
T ss_pred CEEEEEchHHHHHH-HHHHHHhcCCeEEeeccch-hhhhhhHHhhhhhhh--hhhhHh-----hcccceEeec---ccch
Confidence 46899999999986 4677778999999999432 345667778865532 222211 1357777753 2333
Q ss_pred HHHHHHHCCCCeeeHHHHHHHHhcCCcEEEEeCCCCchHHHHHHHHHHHHcCCC
Q 009293 156 EILHAKSVGVPIYKRDYWLAKLTEKYNLIAVSGSHGKSTTASMLAYVLKAMGDD 209 (538)
Q Consensus 156 ~l~~a~~~gi~vi~~~~~l~~~~~~~~vI~VTGTnGKTTTt~ml~~iL~~~G~~ 209 (538)
.+...... .+++... ...++|.-++|. --.++.-+++.++..|..
T Consensus 70 ~v~~v~~~-------~~i~~~l-~~g~iiid~sT~-~p~~~~~~~~~~~~~g~~ 114 (163)
T PF03446_consen 70 AVEAVLFG-------ENILAGL-RPGKIIIDMSTI-SPETSRELAERLAAKGVR 114 (163)
T ss_dssp HHHHHHHC-------TTHGGGS--TTEEEEE-SS---HHHHHHHHHHHHHTTEE
T ss_pred hhhhhhhh-------hHHhhcc-ccceEEEecCCc-chhhhhhhhhhhhhccce
Confidence 33332110 0111111 233455555555 455556667777877743
No 61
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=91.48 E-value=1.3 Score=52.32 Aligned_cols=76 Identities=18% Similarity=0.201 Sum_probs=51.1
Q ss_pred CceEEEEeechhhHHHHHHHHHhCCCcEEEecCCCC----------------hh----HHHHHHCCCeEEeCCCC-CCcC
Q 009293 75 KGWIHFVGIGGSGLSALAKLALKQGFEVSGSDLVWS----------------SY----MEGLLEAGANLHIGHSV-SNIQ 133 (538)
Q Consensus 75 ~~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~----------------~~----~~~~~~~Ga~~~~~~~~-~~~~ 133 (538)
.++|+|||.|.+|++| |.+|+.+|++|+..|.... +. ++.+.+.|+.+..+... ..+.
T Consensus 539 gKkVaIIGgGPAGLsA-A~~Lar~G~~VtV~Ek~~~~GG~lr~~IP~~Rlp~evL~~die~l~~~GVe~~~gt~Vdi~le 617 (1019)
T PRK09853 539 RKKVAVIGAGPAGLAA-AYFLARAGHPVTVFEREENAGGVVKNIIPQFRIPAELIQHDIEFVKAHGVKFEFGCSPDLTVE 617 (1019)
T ss_pred CCcEEEECCCHHHHHH-HHHHHHcCCeEEEEecccccCcceeeecccccccHHHHHHHHHHHHHcCCEEEeCceeEEEhh
Confidence 3569999999999997 7888999999999985310 11 23455679888776432 1111
Q ss_pred CCCCCCCCCEEEEcCCCCC
Q 009293 134 GNDGSRFPNAVVASSAIPQ 152 (538)
Q Consensus 134 ~~~~~~~~d~vvvsp~i~~ 152 (538)
. .....+|.||+..|..+
T Consensus 618 ~-L~~~gYDaVILATGA~~ 635 (1019)
T PRK09853 618 Q-LKNEGYDYVVVAIGADK 635 (1019)
T ss_pred h-heeccCCEEEECcCCCC
Confidence 0 00114899999998753
No 62
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=91.42 E-value=1.3 Score=44.76 Aligned_cols=113 Identities=16% Similarity=0.160 Sum_probs=65.5
Q ss_pred eEEEEeechhhHHHHHHHHHhCCCcEEEecCCCChhHHHHHHCCCeEEeCCCCCCcCCCCCCCCCCEEEEcCCCCCCCHH
Q 009293 77 WIHFVGIGGSGLSALAKLALKQGFEVSGSDLVWSSYMEGLLEAGANLHIGHSVSNIQGNDGSRFPNAVVASSAIPQDNVE 156 (538)
Q Consensus 77 ~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~d~vvvsp~i~~~~~~ 156 (538)
+|.|||.|..|.+. |..|+..|++|.++|.+. +-.+.+.+.|+.... ...+.. +..|+|++.. ++.+.
T Consensus 1 ~IgvIG~G~mG~~i-A~~l~~~G~~V~~~dr~~-~~~~~~~~~g~~~~~--~~~~~~-----~~aDivi~~v---p~~~~ 68 (291)
T TIGR01505 1 KVGFIGLGIMGSPM-SINLAKAGYQLHVTTIGP-EVADELLAAGAVTAE--TARQVT-----EQADVIFTMV---PDSPQ 68 (291)
T ss_pred CEEEEEecHHHHHH-HHHHHHCCCeEEEEcCCH-HHHHHHHHCCCcccC--CHHHHH-----hcCCEEEEec---CCHHH
Confidence 37899999999874 666778999999999653 334556666764321 111111 2578888864 23333
Q ss_pred HHHHHHCCCCeeeHHHHHHHHhcCCcEEEEeCCCCchHHHHHHHHHHHHcCCC
Q 009293 157 ILHAKSVGVPIYKRDYWLAKLTEKYNLIAVSGSHGKSTTASMLAYVLKAMGDD 209 (538)
Q Consensus 157 l~~a~~~gi~vi~~~~~l~~~~~~~~vI~VTGTnGKTTTt~ml~~iL~~~G~~ 209 (538)
+..... .....+... +. ..+-|.-|.+...++.-+.+.++..|..
T Consensus 69 ~~~v~~------~~~~~~~~~-~~-g~iivd~st~~~~~~~~l~~~l~~~g~~ 113 (291)
T TIGR01505 69 VEEVAF------GENGIIEGA-KP-GKTLVDMSSISPIESKRFAKAVKEKGID 113 (291)
T ss_pred HHHHHc------CcchHhhcC-CC-CCEEEECCCCCHHHHHHHHHHHHHcCCC
Confidence 322210 000111111 22 2344555667777777788888887754
No 63
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=91.31 E-value=1.5 Score=44.19 Aligned_cols=64 Identities=25% Similarity=0.142 Sum_probs=42.9
Q ss_pred eEEEEeechhhHHHHHHHHHhCCCcEEEecCCCChhHHHHHHCCCeEEeCCCCCCcCCCCCCCCCCEEEEcC
Q 009293 77 WIHFVGIGGSGLSALAKLALKQGFEVSGSDLVWSSYMEGLLEAGANLHIGHSVSNIQGNDGSRFPNAVVASS 148 (538)
Q Consensus 77 ~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~d~vvvsp 148 (538)
+|.|||.|..|.+ +|..|+.+|++|.++|.+. +..+.+.+.|+........+.+ ..+|+||+..
T Consensus 2 ~I~IIG~G~mG~s-la~~L~~~g~~V~~~d~~~-~~~~~a~~~g~~~~~~~~~~~~------~~aDlVilav 65 (279)
T PRK07417 2 KIGIVGLGLIGGS-LGLDLRSLGHTVYGVSRRE-STCERAIERGLVDEASTDLSLL------KDCDLVILAL 65 (279)
T ss_pred eEEEEeecHHHHH-HHHHHHHCCCEEEEEECCH-HHHHHHHHCCCcccccCCHhHh------cCCCEEEEcC
Confidence 5889999999987 5777788999999999542 3345666667532221111112 2589999874
No 64
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=90.71 E-value=1.1 Score=45.14 Aligned_cols=114 Identities=24% Similarity=0.189 Sum_probs=68.1
Q ss_pred eEEEEeechhhHHHHHHHHHhCCCcEEEecCCCChhHHHHHHCCCeEEeCCCCCCcCCCCCCCCCCEEEEcCCCCCCCHH
Q 009293 77 WIHFVGIGGSGLSALAKLALKQGFEVSGSDLVWSSYMEGLLEAGANLHIGHSVSNIQGNDGSRFPNAVVASSAIPQDNVE 156 (538)
Q Consensus 77 ~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~d~vvvsp~i~~~~~~ 156 (538)
+|.|||+|.-|.+. |.-|.+.|+.|.++|.++..-.+.+.+.|+...-... +.. ...|+|+.-. ++.+.
T Consensus 2 kIafIGLG~MG~pm-A~~L~~aG~~v~v~~r~~~ka~~~~~~~Ga~~a~s~~-eaa------~~aDvVitmv---~~~~~ 70 (286)
T COG2084 2 KIAFIGLGIMGSPM-AANLLKAGHEVTVYNRTPEKAAELLAAAGATVAASPA-EAA------AEADVVITML---PDDAA 70 (286)
T ss_pred eEEEEcCchhhHHH-HHHHHHCCCEEEEEeCChhhhhHHHHHcCCcccCCHH-HHH------HhCCEEEEec---CCHHH
Confidence 58999999999875 6666779999999997765445566677887643321 111 2478888764 23444
Q ss_pred HHHHHHCCCCeeeHHHHHHHHhcCCcEEEEeCCCCchHHHHHHHHHHHHcCCC
Q 009293 157 ILHAKSVGVPIYKRDYWLAKLTEKYNLIAVSGSHGKSTTASMLAYVLKAMGDD 209 (538)
Q Consensus 157 l~~a~~~gi~vi~~~~~l~~~~~~~~vI~VTGTnGKTTTt~ml~~iL~~~G~~ 209 (538)
+...... +...+... ++..++---.|. --+++.-++..+++.|..
T Consensus 71 V~~V~~g------~~g~~~~~-~~G~i~IDmSTi-sp~~a~~~a~~~~~~G~~ 115 (286)
T COG2084 71 VRAVLFG------ENGLLEGL-KPGAIVIDMSTI-SPETARELAAALAAKGLE 115 (286)
T ss_pred HHHHHhC------ccchhhcC-CCCCEEEECCCC-CHHHHHHHHHHHHhcCCc
Confidence 4433110 00111111 223444444555 455556677788888865
No 65
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=90.63 E-value=1.8 Score=44.03 Aligned_cols=112 Identities=17% Similarity=0.185 Sum_probs=64.6
Q ss_pred eEEEEeechhhHHHHHHHHHhCCCcEEEecCCCChhHHHHHHCCCeEEeCCCCCCcCCCCCCCCCCEEEEcCCCCCCCHH
Q 009293 77 WIHFVGIGGSGLSALAKLALKQGFEVSGSDLVWSSYMEGLLEAGANLHIGHSVSNIQGNDGSRFPNAVVASSAIPQDNVE 156 (538)
Q Consensus 77 ~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~d~vvvsp~i~~~~~~ 156 (538)
+|.|||+|.-|.+ +|.-|+..|++|.++|.+.. ..+.+.+.|+.... ...++. .....+|+|++.. |+. .
T Consensus 2 ~Ig~IGlG~mG~~-la~~L~~~g~~V~~~dr~~~-~~~~l~~~g~~~~~--s~~~~~--~~~~~~dvIi~~v--p~~--~ 71 (298)
T TIGR00872 2 QLGLIGLGRMGAN-IVRRLAKRGHDCVGYDHDQD-AVKAMKEDRTTGVA--NLRELS--QRLSAPRVVWVMV--PHG--I 71 (298)
T ss_pred EEEEEcchHHHHH-HHHHHHHCCCEEEEEECCHH-HHHHHHHcCCcccC--CHHHHH--hhcCCCCEEEEEc--Cch--H
Confidence 5899999999986 57778889999999986432 34556666654321 111110 0011468887753 222 2
Q ss_pred HHHHHHCCCCeeeHHHHHHHHhcCCcEEEEeCCCCchHHHHHHHHHHHHcCCC
Q 009293 157 ILHAKSVGVPIYKRDYWLAKLTEKYNLIAVSGSHGKSTTASMLAYVLKAMGDD 209 (538)
Q Consensus 157 l~~a~~~gi~vi~~~~~l~~~~~~~~vI~VTGTnGKTTTt~ml~~iL~~~G~~ 209 (538)
+....+ ++.... +.- .+.|..|++.-.++.-+.+.++..|..
T Consensus 72 ~~~v~~---------~l~~~l-~~g-~ivid~st~~~~~t~~~~~~~~~~g~~ 113 (298)
T TIGR00872 72 VDAVLE---------ELAPTL-EKG-DIVIDGGNSYYKDSLRRYKLLKEKGIH 113 (298)
T ss_pred HHHHHH---------HHHhhC-CCC-CEEEECCCCCcccHHHHHHHHHhcCCe
Confidence 222211 222222 122 355778888755666667778777754
No 66
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=90.62 E-value=1.7 Score=43.98 Aligned_cols=36 Identities=19% Similarity=0.276 Sum_probs=29.0
Q ss_pred CCCceEEEEeechhhHHHHHHHHHhCCCcEEEecCCC
Q 009293 73 NRKGWIHFVGIGGSGLSALAKLALKQGFEVSGSDLVW 109 (538)
Q Consensus 73 ~~~~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~ 109 (538)
++.++|.|||.|.-|.+ +|..++..|++|.+.|...
T Consensus 3 ~~~~~V~ViGaG~mG~~-iA~~~a~~G~~V~l~d~~~ 38 (286)
T PRK07819 3 DAIQRVGVVGAGQMGAG-IAEVCARAGVDVLVFETTE 38 (286)
T ss_pred CCccEEEEEcccHHHHH-HHHHHHhCCCEEEEEECCH
Confidence 34457999999988876 4677788999999999764
No 67
>TIGR03172 probable selenium-dependent hydroxylase accessory protein YqeC. This uncharacterized protein family includes YqeC from Escherichia coli. A phylogenetic profiling analysis shows correlation with SelD, the selenium donor protein, even in species where SelD contributes to neither selenocysteine nor selenouridine biosynthesis. Instead, this family, and families TIGR03309 and TIGR03310 appear to mark selenium-dependent molybdenum hydroxylase maturation systems.
Probab=90.37 E-value=0.34 Score=47.34 Aligned_cols=36 Identities=25% Similarity=0.300 Sum_probs=32.8
Q ss_pred EEEEeCCCCchHHHHHHHHHHHHcCCCeEEEeCCCC
Q 009293 183 LIAVSGSHGKSTTASMLAYVLKAMGDDLTAIVGAHV 218 (538)
Q Consensus 183 vI~VTGTnGKTTTt~ml~~iL~~~G~~v~~~~g~~~ 218 (538)
+|+|+|.-||||+..-|+.-|+..|++|..++.+++
T Consensus 1 vi~~vG~gGKTtl~~~l~~~~~~~g~~v~~TTTT~m 36 (232)
T TIGR03172 1 VIAFVGAGGKTSTMFWLAAEYRKEGYRVLVTTTTRM 36 (232)
T ss_pred CEEEEcCCcHHHHHHHHHHHHHHCCCeEEEECCccc
Confidence 589999999999999999999999999888777765
No 68
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=90.22 E-value=1.6 Score=43.89 Aligned_cols=33 Identities=24% Similarity=0.352 Sum_probs=27.5
Q ss_pred ceEEEEeechhhHHHHHHHHHhCCCcEEEecCCC
Q 009293 76 GWIHFVGIGGSGLSALAKLALKQGFEVSGSDLVW 109 (538)
Q Consensus 76 ~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~ 109 (538)
++|.|||.|.-|.+ +|..++..|++|.+.|.+.
T Consensus 4 ~kI~VIG~G~mG~~-ia~~la~~g~~V~~~d~~~ 36 (282)
T PRK05808 4 QKIGVIGAGTMGNG-IAQVCAVAGYDVVMVDISD 36 (282)
T ss_pred cEEEEEccCHHHHH-HHHHHHHCCCceEEEeCCH
Confidence 46899999999987 4677788999999999653
No 69
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=90.04 E-value=4.7 Score=42.27 Aligned_cols=121 Identities=21% Similarity=0.273 Sum_probs=73.6
Q ss_pred cCCCceEEEEeechhhHHHHHHHHHhCCCcEEEecCCCC------------------hhHHHHHHCCCeEEeCCCCCCcC
Q 009293 72 KNRKGWIHFVGIGGSGLSALAKLALKQGFEVSGSDLVWS------------------SYMEGLLEAGANLHIGHSVSNIQ 133 (538)
Q Consensus 72 ~~~~~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~------------------~~~~~~~~~Ga~~~~~~~~~~~~ 133 (538)
++.+.+|.|+|+|-.|+.. |..++.+|++|.|.|.+.. +-++++.+.|- +....+...+
T Consensus 6 k~~~~~I~ViGLGYVGLPl-A~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~-lraTtd~~~l- 82 (436)
T COG0677 6 KNMSATIGVIGLGYVGLPL-AAAFASAGFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGK-LRATTDPEEL- 82 (436)
T ss_pred cCCceEEEEEccccccHHH-HHHHHHcCCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCC-ceEecChhhc-
Confidence 4445679999999999985 6666889999999997621 01223334331 1111122222
Q ss_pred CCCCCCCCCEEEEcCCCCC---CCH---HHHHHHHCCCCeeeHHHHHHHHhcCCcEEEEeCCCCchHHHHHHHHHHHH-c
Q 009293 134 GNDGSRFPNAVVASSAIPQ---DNV---EILHAKSVGVPIYKRDYWLAKLTEKYNLIAVSGSHGKSTTASMLAYVLKA-M 206 (538)
Q Consensus 134 ~~~~~~~~d~vvvsp~i~~---~~~---~l~~a~~~gi~vi~~~~~l~~~~~~~~vI~VTGTnGKTTTt~ml~~iL~~-~ 206 (538)
+.+|++++.+--|. ..| .+..| .+-...-.++...|-+--|.==+||=.++.-+|+. .
T Consensus 83 -----~~~dv~iI~VPTPl~~~~~pDls~v~~a----------a~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~s 147 (436)
T COG0677 83 -----KECDVFIICVPTPLKKYREPDLSYVESA----------ARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERS 147 (436)
T ss_pred -----ccCCEEEEEecCCcCCCCCCChHHHHHH----------HHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcC
Confidence 24676555332221 222 22222 23333344566788899999999999999999997 6
Q ss_pred CCCe
Q 009293 207 GDDL 210 (538)
Q Consensus 207 G~~v 210 (538)
|.++
T Consensus 148 gL~~ 151 (436)
T COG0677 148 GLKF 151 (436)
T ss_pred CCcc
Confidence 6653
No 70
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=89.92 E-value=3.2 Score=42.19 Aligned_cols=113 Identities=22% Similarity=0.187 Sum_probs=64.8
Q ss_pred eEEEEeechhhHHHHHHHHHhCCCcEEEecCCCChhHHHHHHCCCeEEeCCCCCCcCCCCCCCCCCEEEEcCCCCCCCHH
Q 009293 77 WIHFVGIGGSGLSALAKLALKQGFEVSGSDLVWSSYMEGLLEAGANLHIGHSVSNIQGNDGSRFPNAVVASSAIPQDNVE 156 (538)
Q Consensus 77 ~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~d~vvvsp~i~~~~~~ 156 (538)
+|.|||+|.-|.+ +|.-|+..|++|.++|.+.. -.+.+.+.|+.+.- ...++.. ..+.+|+|++.. |+ .+.
T Consensus 2 ~Ig~IGlG~MG~~-mA~~L~~~g~~v~v~dr~~~-~~~~~~~~g~~~~~--~~~e~~~--~~~~~dvvi~~v--~~-~~~ 72 (301)
T PRK09599 2 QLGMIGLGRMGGN-MARRLLRGGHEVVGYDRNPE-AVEALAEEGATGAD--SLEELVA--KLPAPRVVWLMV--PA-GEI 72 (301)
T ss_pred EEEEEcccHHHHH-HHHHHHHCCCeEEEEECCHH-HHHHHHHCCCeecC--CHHHHHh--hcCCCCEEEEEe--cC-CcH
Confidence 5899999999986 46666779999999986532 34456667876532 1111110 001257766643 22 222
Q ss_pred HHHHHHCCCCeeeHHHHHHHHhcCCcEEEEeCCCCchHHHHHHHHHHHHcCCC
Q 009293 157 ILHAKSVGVPIYKRDYWLAKLTEKYNLIAVSGSHGKSTTASMLAYVLKAMGDD 209 (538)
Q Consensus 157 l~~a~~~gi~vi~~~~~l~~~~~~~~vI~VTGTnGKTTTt~ml~~iL~~~G~~ 209 (538)
+..... .+.... +. ..+.|..|++...++.-+++.+++.|..
T Consensus 73 ~~~v~~---------~l~~~l-~~-g~ivid~st~~~~~~~~~~~~~~~~g~~ 114 (301)
T PRK09599 73 TDATID---------ELAPLL-SP-GDIVIDGGNSYYKDDIRRAELLAEKGIH 114 (301)
T ss_pred HHHHHH---------HHHhhC-CC-CCEEEeCCCCChhHHHHHHHHHHHcCCE
Confidence 222210 122222 12 2456677777777777778889888864
No 71
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=89.77 E-value=1.5 Score=44.47 Aligned_cols=66 Identities=14% Similarity=0.093 Sum_probs=41.7
Q ss_pred CceEEEEeechhhHHHHHHHHHhCCCcEEEecCCCChhHHHHHHCCCeEEeCCCCCCcCCCCCCCCCCEEEEc
Q 009293 75 KGWIHFVGIGGSGLSALAKLALKQGFEVSGSDLVWSSYMEGLLEAGANLHIGHSVSNIQGNDGSRFPNAVVAS 147 (538)
Q Consensus 75 ~~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~d~vvvs 147 (538)
.++++|+|.|+.|++. |+.|+..|.+|.+++.+.. ....+.+.|....--.+.... ...+|+|+..
T Consensus 151 gk~v~IiG~G~iG~av-A~~L~~~G~~V~v~~R~~~-~~~~~~~~g~~~~~~~~l~~~-----l~~aDiVint 216 (287)
T TIGR02853 151 GSNVMVLGFGRTGMTI-ARTFSALGARVFVGARSSA-DLARITEMGLIPFPLNKLEEK-----VAEIDIVINT 216 (287)
T ss_pred CCEEEEEcChHHHHHH-HHHHHHCCCEEEEEeCCHH-HHHHHHHCCCeeecHHHHHHH-----hccCCEEEEC
Confidence 3579999999999975 7777889999999986532 233344556543211111111 1257888875
No 72
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=89.77 E-value=2.5 Score=43.01 Aligned_cols=118 Identities=19% Similarity=0.097 Sum_probs=67.4
Q ss_pred CceEEEEeec-hhhHHHHHHHHHhCCCcEEEecCCCChhHHHH-HHCCCeEEeCCCCCCcCCCCCCCCCCEEEEcCCCCC
Q 009293 75 KGWIHFVGIG-GSGLSALAKLALKQGFEVSGSDLVWSSYMEGL-LEAGANLHIGHSVSNIQGNDGSRFPNAVVASSAIPQ 152 (538)
Q Consensus 75 ~~~v~vlG~G-~sG~~~la~~l~~~G~~v~g~D~~~~~~~~~~-~~~Ga~~~~~~~~~~~~~~~~~~~~d~vvvsp~i~~ 152 (538)
-++|.|||.| .-|.. +|.+|..+|+.|+.++.+.. ...++ .+..+.+...-.+..+.. .+ -.+..+|+..|+.+
T Consensus 159 Gk~V~vIG~s~ivG~P-mA~~L~~~gatVtv~~~~t~-~l~e~~~~ADIVIsavg~~~~v~~-~~-ik~GaiVIDvgin~ 234 (301)
T PRK14194 159 GKHAVVIGRSNIVGKP-MAALLLQAHCSVTVVHSRST-DAKALCRQADIVVAAVGRPRLIDA-DW-LKPGAVVIDVGINR 234 (301)
T ss_pred CCEEEEECCCCccHHH-HHHHHHHCCCEEEEECCCCC-CHHHHHhcCCEEEEecCChhcccH-hh-ccCCcEEEEecccc
Confidence 3679999997 66664 68888899999999975433 23333 233333322222222221 11 13567888777654
Q ss_pred CCHHHHHHHHCC-CCeeeHHHHHHHHhcCCcEEEEe---CCCCchHHHHHHHHHHHHc
Q 009293 153 DNVEILHAKSVG-VPIYKRDYWLAKLTEKYNLIAVS---GSHGKSTTASMLAYVLKAM 206 (538)
Q Consensus 153 ~~~~l~~a~~~g-i~vi~~~~~l~~~~~~~~vI~VT---GTnGKTTTt~ml~~iL~~~ 206 (538)
-.. .| ..+.+..+|-. ..+ ..-.|| |--|.=||+.++..+++.+
T Consensus 235 ~~~-------~g~~kl~GDvdf~~-~~~--~a~~iTPVPGGVGp~Tva~L~~N~~~a~ 282 (301)
T PRK14194 235 IDD-------DGRSRLVGDVDFDS-ALP--VVSAITPVPGGVGPMTIAFLMKNTVTAA 282 (301)
T ss_pred cCC-------CCCcceecccchHH-HHh--hcceecCCCCchhHHHHHHHHHHHHHHH
Confidence 110 01 02334333211 111 233444 8999999999999999875
No 73
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=89.68 E-value=2.5 Score=42.76 Aligned_cols=113 Identities=16% Similarity=0.184 Sum_probs=66.0
Q ss_pred eEEEEeechhhHHHHHHHHHhCCCcEEEecCCCChhHHHHHHCCCeEEeCCCCCCcCCCCCCCCCCEEEEcCCCCCCCHH
Q 009293 77 WIHFVGIGGSGLSALAKLALKQGFEVSGSDLVWSSYMEGLLEAGANLHIGHSVSNIQGNDGSRFPNAVVASSAIPQDNVE 156 (538)
Q Consensus 77 ~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~d~vvvsp~i~~~~~~ 156 (538)
+|.|||.|..|.+ +|..|+..|++|.++|.+.. ..+.+.+.|+... .+..+.. ..+|+|++.. ++.+.
T Consensus 4 ~IgviG~G~mG~~-~a~~l~~~g~~v~~~d~~~~-~~~~~~~~g~~~~--~~~~e~~-----~~~d~vi~~v---p~~~~ 71 (296)
T PRK11559 4 KVGFIGLGIMGKP-MSKNLLKAGYSLVVYDRNPE-AVAEVIAAGAETA--STAKAVA-----EQCDVIITML---PNSPH 71 (296)
T ss_pred eEEEEccCHHHHH-HHHHHHHCCCeEEEEcCCHH-HHHHHHHCCCeec--CCHHHHH-----hcCCEEEEeC---CCHHH
Confidence 5899999999986 46777779999999985432 3445666676432 2221111 2578888864 22233
Q ss_pred HHHHHHCCCCeeeHHHHHHHHhcCCcEEEEeCCCCchHHHHHHHHHHHHcCCC
Q 009293 157 ILHAKSVGVPIYKRDYWLAKLTEKYNLIAVSGSHGKSTTASMLAYVLKAMGDD 209 (538)
Q Consensus 157 l~~a~~~gi~vi~~~~~l~~~~~~~~vI~VTGTnGKTTTt~ml~~iL~~~G~~ 209 (538)
+..... ....++... ++. .|-|.-|..+.+++.-+.+.+...|..
T Consensus 72 ~~~v~~------~~~~~~~~~-~~g-~iiid~st~~~~~~~~l~~~~~~~g~~ 116 (296)
T PRK11559 72 VKEVAL------GENGIIEGA-KPG-TVVIDMSSIAPLASREIAAALKAKGIE 116 (296)
T ss_pred HHHHHc------CcchHhhcC-CCC-cEEEECCCCCHHHHHHHHHHHHHcCCc
Confidence 322210 000122221 222 344566667888888888888877643
No 74
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=89.55 E-value=0.39 Score=42.79 Aligned_cols=37 Identities=16% Similarity=0.233 Sum_probs=28.0
Q ss_pred hhhcCCCceEEEEeechhhHHHHHHHHHhCCCc-EEEecCC
Q 009293 69 VDFKNRKGWIHFVGIGGSGLSALAKLALKQGFE-VSGSDLV 108 (538)
Q Consensus 69 ~~~~~~~~~v~vlG~G~sG~~~la~~l~~~G~~-v~g~D~~ 108 (538)
.++.+ ++++|+|.|++|++++ ..|+..|.+ +.....+
T Consensus 8 ~~l~~--~~vlviGaGg~ar~v~-~~L~~~g~~~i~i~nRt 45 (135)
T PF01488_consen 8 GDLKG--KRVLVIGAGGAARAVA-AALAALGAKEITIVNRT 45 (135)
T ss_dssp STGTT--SEEEEESSSHHHHHHH-HHHHHTTSSEEEEEESS
T ss_pred CCcCC--CEEEEECCHHHHHHHH-HHHHHcCCCEEEEEECC
Confidence 34555 6799999999999875 555667877 8888754
No 75
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=89.54 E-value=2.2 Score=42.98 Aligned_cols=118 Identities=17% Similarity=0.150 Sum_probs=67.5
Q ss_pred ceEEEEeechh-hHHHHHHHHHhCCCcEEEecCCCChhHHH-HHHCCCeEEeCCCCCCcCCCCCCCCCCEEEEcCCCCCC
Q 009293 76 GWIHFVGIGGS-GLSALAKLALKQGFEVSGSDLVWSSYMEG-LLEAGANLHIGHSVSNIQGNDGSRFPNAVVASSAIPQD 153 (538)
Q Consensus 76 ~~v~vlG~G~s-G~~~la~~l~~~G~~v~g~D~~~~~~~~~-~~~~Ga~~~~~~~~~~~~~~~~~~~~d~vvvsp~i~~~ 153 (538)
++|.|+|.+.+ |+. +|.+|..+|++|++.+.+.. .+.+ +.+..+.+...-.+..+.. ++. ++..+|+..|+.+.
T Consensus 159 k~vvViGrs~iVGkP-la~lL~~~~atVt~~hs~t~-~l~~~~~~ADIVV~avG~~~~i~~-~~i-k~gavVIDVGin~~ 234 (285)
T PRK14189 159 AHAVVIGRSNIVGKP-MAMLLLQAGATVTICHSKTR-DLAAHTRQADIVVAAVGKRNVLTA-DMV-KPGATVIDVGMNRD 234 (285)
T ss_pred CEEEEECCCCccHHH-HHHHHHHCCCEEEEecCCCC-CHHHHhhhCCEEEEcCCCcCccCH-HHc-CCCCEEEEcccccc
Confidence 67999999999 775 68888899999998764322 2332 3333333322222221211 111 35678888887652
Q ss_pred CHHHHHHHHCCCCeeeHHHHHHHHhcCCcEEEEeCCCCchHHHHHHHHHHHHc
Q 009293 154 NVEILHAKSVGVPIYKRDYWLAKLTEKYNLIAVSGSHGKSTTASMLAYVLKAM 206 (538)
Q Consensus 154 ~~~l~~a~~~gi~vi~~~~~l~~~~~~~~vI~VTGTnGKTTTt~ml~~iL~~~ 206 (538)
. .| .+....+|-.-......+-=|-|--|.=||+.++.++++.+
T Consensus 235 ~--------~g-kl~GDVd~~~v~~~a~~iTPVPGGVGp~T~a~Ll~N~~~a~ 278 (285)
T PRK14189 235 D--------AG-KLCGDVDFAGVKEVAGYITPVPGGVGPMTITMLLVNTIEAA 278 (285)
T ss_pred C--------CC-CeeCCccHHHHHhhceEecCCCCCchHHHHHHHHHHHHHHH
Confidence 1 01 23333332111111122333447899999999999999875
No 76
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=89.47 E-value=4.7 Score=43.02 Aligned_cols=111 Identities=23% Similarity=0.282 Sum_probs=63.7
Q ss_pred eEEEEeechhhHHHHHHHHHhCCCcEEEecCCCChhHHHHH-------------------HCCCeEEeCCCCCCcCCCCC
Q 009293 77 WIHFVGIGGSGLSALAKLALKQGFEVSGSDLVWSSYMEGLL-------------------EAGANLHIGHSVSNIQGNDG 137 (538)
Q Consensus 77 ~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~~~~~~~~-------------------~~Ga~~~~~~~~~~~~~~~~ 137 (538)
+|.|||+|.-|.+ +|..|+..|++|.++|.+... ++.+. +.|. +....+....
T Consensus 2 kI~vIGlG~~G~~-lA~~La~~G~~V~~~d~~~~~-v~~l~~g~~~~~e~~l~~~~~~~~~~g~-l~~~~~~~~~----- 73 (411)
T TIGR03026 2 KIAVIGLGYVGLP-LAALLADLGHEVTGVDIDQEK-VDKLNKGKSPIYEPGLDELLAKALAAGR-LRATTDYEDA----- 73 (411)
T ss_pred EEEEECCCchhHH-HHHHHHhcCCeEEEEECCHHH-HHHhhcCCCCCCCCCHHHHHHHhhhcCC-eEEECCHHHH-----
Confidence 4899999999986 577778899999999965321 12221 1221 1111111111
Q ss_pred CCCCCEEEEcCCCCCC---CH---HHHHHHHCCCCeeeHHHHHHHHhcCCcEEEEeCCCCchHHHHHHHHHHHH
Q 009293 138 SRFPNAVVASSAIPQD---NV---EILHAKSVGVPIYKRDYWLAKLTEKYNLIAVSGSHGKSTTASMLAYVLKA 205 (538)
Q Consensus 138 ~~~~d~vvvsp~i~~~---~~---~l~~a~~~gi~vi~~~~~l~~~~~~~~vI~VTGTnGKTTTt~ml~~iL~~ 205 (538)
.+.+|+|++...-|.. .+ .+..+. +-+....+...+|.++.|.-=+||..+...++++
T Consensus 74 ~~~advvii~vpt~~~~~~~~d~~~v~~~~----------~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~~~~ 137 (411)
T TIGR03026 74 IRDADVIIICVPTPLKEDGSPDLSYVESAA----------ETIAKHLRKGATVVLESTVPPGTTEEVVKPILER 137 (411)
T ss_pred HhhCCEEEEEeCCCCCCCCCcChHHHHHHH----------HHHHHhcCCCCEEEEeCcCCCCchHHHHHHHHHh
Confidence 1257888876543321 11 222221 1122222344677788888888888888888876
No 77
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=89.44 E-value=3.2 Score=45.07 Aligned_cols=32 Identities=25% Similarity=0.350 Sum_probs=27.8
Q ss_pred eEEEEeechhhHHHHHHHHHhCCCcEEEecCCC
Q 009293 77 WIHFVGIGGSGLSALAKLALKQGFEVSGSDLVW 109 (538)
Q Consensus 77 ~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~ 109 (538)
+|.|||+|.-|.+ +|+-|+.+|++|.++|.+.
T Consensus 3 ~IgvIGLG~MG~~-lA~nL~~~G~~V~v~dr~~ 34 (470)
T PTZ00142 3 DIGLIGLAVMGQN-LALNIASRGFKISVYNRTY 34 (470)
T ss_pred EEEEEeEhHHHHH-HHHHHHHCCCeEEEEeCCH
Confidence 5899999999986 6888889999999999654
No 78
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=89.29 E-value=2.5 Score=42.95 Aligned_cols=113 Identities=21% Similarity=0.205 Sum_probs=63.8
Q ss_pred eEEEEeechhhHHHHHHHHHhCCCcEEEecCCCChhHHHHHHCCCeEEeCCCCCCcCCCCCCCCCCEEEEcCCCCCCCHH
Q 009293 77 WIHFVGIGGSGLSALAKLALKQGFEVSGSDLVWSSYMEGLLEAGANLHIGHSVSNIQGNDGSRFPNAVVASSAIPQDNVE 156 (538)
Q Consensus 77 ~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~d~vvvsp~i~~~~~~ 156 (538)
+|.|||+|.-|.+ +|..|+..|++|.++|.+.. -.+.+.+.|+.... ...+.. ...|+|++.. | +...
T Consensus 3 ~Ig~IGlG~mG~~-mA~~l~~~G~~V~v~d~~~~-~~~~~~~~g~~~~~--s~~~~~-----~~aDvVi~~v--p-~~~~ 70 (296)
T PRK15461 3 AIAFIGLGQMGSP-MASNLLKQGHQLQVFDVNPQ-AVDALVDKGATPAA--SPAQAA-----AGAEFVITML--P-NGDL 70 (296)
T ss_pred eEEEEeeCHHHHH-HHHHHHHCCCeEEEEcCCHH-HHHHHHHcCCcccC--CHHHHH-----hcCCEEEEec--C-CHHH
Confidence 5899999999986 56777789999999996543 34556666764322 111111 2478888864 2 2222
Q ss_pred HHHHHHCCCCeeeHHHHHHHHhcCCcEEEEeCCCCchHHHHHHHHHHHHcCCC
Q 009293 157 ILHAKSVGVPIYKRDYWLAKLTEKYNLIAVSGSHGKSTTASMLAYVLKAMGDD 209 (538)
Q Consensus 157 l~~a~~~gi~vi~~~~~l~~~~~~~~vI~VTGTnGKTTTt~ml~~iL~~~G~~ 209 (538)
+..... +. ..++... +..++| |--|.+-..++.-+.+.+.+.|.+
T Consensus 71 ~~~vl~-~~-----~~i~~~l-~~g~lv-id~sT~~p~~~~~l~~~l~~~g~~ 115 (296)
T PRK15461 71 VRSVLF-GE-----NGVCEGL-SRDALV-IDMSTIHPLQTDKLIADMQAKGFS 115 (296)
T ss_pred HHHHHc-Cc-----ccHhhcC-CCCCEE-EECCCCCHHHHHHHHHHHHHcCCc
Confidence 322211 00 0111111 223455 545555666666666777777754
No 79
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=89.10 E-value=2.4 Score=42.82 Aligned_cols=118 Identities=19% Similarity=0.105 Sum_probs=67.4
Q ss_pred CceEEEEeech-hhHHHHHHHHHhCCCcEEEecCCCChhHHHHHHCCCeEEeC--CCCCCcCCCCCCCCCCEEEEcCCCC
Q 009293 75 KGWIHFVGIGG-SGLSALAKLALKQGFEVSGSDLVWSSYMEGLLEAGANLHIG--HSVSNIQGNDGSRFPNAVVASSAIP 151 (538)
Q Consensus 75 ~~~v~vlG~G~-sG~~~la~~l~~~G~~v~g~D~~~~~~~~~~~~~Ga~~~~~--~~~~~~~~~~~~~~~d~vvvsp~i~ 151 (538)
-++++|+|.|. .|+. +|.+|..+|++|+..+.+.. .+.+.. +.+.+++. -.+..+.. ++. ....+|+..|++
T Consensus 158 Gk~vvVIGrs~~VG~p-la~lL~~~gatVtv~~s~t~-~l~~~~-~~ADIVIsAvg~p~~i~~-~~v-k~gavVIDvGi~ 232 (286)
T PRK14175 158 GKNAVVIGRSHIVGQP-VSKLLLQKNASVTILHSRSK-DMASYL-KDADVIVSAVGKPGLVTK-DVV-KEGAVIIDVGNT 232 (286)
T ss_pred CCEEEEECCCchhHHH-HHHHHHHCCCeEEEEeCCch-hHHHHH-hhCCEEEECCCCCcccCH-HHc-CCCcEEEEcCCC
Confidence 36799999998 7876 58888889999998875422 222221 23444332 12211111 111 346788888887
Q ss_pred CCCHHHHHHHHCCCCeeeHHHHHHHHhcCCcEEEEeCCCCchHHHHHHHHHHHHc
Q 009293 152 QDNVEILHAKSVGVPIYKRDYWLAKLTEKYNLIAVSGSHGKSTTASMLAYVLKAM 206 (538)
Q Consensus 152 ~~~~~l~~a~~~gi~vi~~~~~l~~~~~~~~vI~VTGTnGKTTTt~ml~~iL~~~ 206 (538)
++- .| .+....+|-.-......+--|-|=-|.=|++.++.+.++++
T Consensus 233 ~~~--------~g-kl~GDvd~~~~~~~a~~iTPVPGGVGp~T~a~L~~n~~~a~ 278 (286)
T PRK14175 233 PDE--------NG-KLKGDVDYDAVKEIAGAITPVPGGVGPLTITMVLNNTLLAE 278 (286)
T ss_pred cCC--------CC-CeecCccHHHHHhhccCcCCCCCCCHHHHHHHHHHHHHHHH
Confidence 631 01 13332232211111223444556699999999999999876
No 80
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=89.05 E-value=4 Score=36.65 Aligned_cols=109 Identities=17% Similarity=0.154 Sum_probs=65.0
Q ss_pred CceEEEEeechhhHHHHHHHHHhCCCcEEEecCCCChhHHHHHHCCCeEEe---CCCCCCcCCCCCCCCCCEEEEcCCCC
Q 009293 75 KGWIHFVGIGGSGLSALAKLALKQGFEVSGSDLVWSSYMEGLLEAGANLHI---GHSVSNIQGNDGSRFPNAVVASSAIP 151 (538)
Q Consensus 75 ~~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~~~~~~~~~~Ga~~~~---~~~~~~~~~~~~~~~~d~vvvsp~i~ 151 (538)
.++|.|+|-+..-...++.+|..+|+.|...+.+.. .++++. +.+.+++ +.. ..+.. ++. ++..+|++.|+.
T Consensus 28 gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~-~l~~~v-~~ADIVvsAtg~~-~~i~~-~~i-kpGa~Vidvg~~ 102 (140)
T cd05212 28 GKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTI-QLQSKV-HDADVVVVGSPKP-EKVPT-EWI-KPGATVINCSPT 102 (140)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCc-CHHHHH-hhCCEEEEecCCC-CccCH-HHc-CCCCEEEEcCCC
Confidence 367999999988888899999999999998874322 233322 2233322 222 11111 011 345566666654
Q ss_pred CCCHHHHHHHHCCCCeeeHHHHHHHHhcCCcEEEEeCCCCchHHHHHHHHHHHHc
Q 009293 152 QDNVEILHAKSVGVPIYKRDYWLAKLTEKYNLIAVSGSHGKSTTASMLAYVLKAM 206 (538)
Q Consensus 152 ~~~~~l~~a~~~gi~vi~~~~~l~~~~~~~~vI~VTGTnGKTTTt~ml~~iL~~~ 206 (538)
... ..+... +...+.-|-|--|+=|++.++.++++.+
T Consensus 103 ~~~---------------~~~~~~---~a~~~tPvpgGVGp~T~a~L~~n~~~~~ 139 (140)
T cd05212 103 KLS---------------GDDVKE---SASLYVPMTGGVGKLTVAMRMQNMVRSV 139 (140)
T ss_pred ccc---------------chhhHh---hceEEcCCCCCchHHHHHHHHHHHHHhc
Confidence 311 011111 1223566778899999999999998764
No 81
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=88.85 E-value=3 Score=42.21 Aligned_cols=33 Identities=27% Similarity=0.377 Sum_probs=28.3
Q ss_pred ceEEEEeechhhHHHHHHHHHhCCCcEEEecCCC
Q 009293 76 GWIHFVGIGGSGLSALAKLALKQGFEVSGSDLVW 109 (538)
Q Consensus 76 ~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~ 109 (538)
++|.|||.|.-|.+ +|..|+..|++|.++|.+.
T Consensus 4 ~~I~ViGaG~mG~~-iA~~la~~G~~V~l~d~~~ 36 (291)
T PRK06035 4 KVIGVVGSGVMGQG-IAQVFARTGYDVTIVDVSE 36 (291)
T ss_pred cEEEEECccHHHHH-HHHHHHhcCCeEEEEeCCH
Confidence 56999999999987 5778888999999999653
No 82
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=88.83 E-value=2.7 Score=42.38 Aligned_cols=118 Identities=14% Similarity=0.056 Sum_probs=66.4
Q ss_pred ceEEEEee-chhhHHHHHHHHHhCCCcEEEecCCCChhHHH-HHHCCCeEEeCCCCCCcCCCCCCCCCCEEEEcCCCCCC
Q 009293 76 GWIHFVGI-GGSGLSALAKLALKQGFEVSGSDLVWSSYMEG-LLEAGANLHIGHSVSNIQGNDGSRFPNAVVASSAIPQD 153 (538)
Q Consensus 76 ~~v~vlG~-G~sG~~~la~~l~~~G~~v~g~D~~~~~~~~~-~~~~Ga~~~~~~~~~~~~~~~~~~~~d~vvvsp~i~~~ 153 (538)
++|.|||. |.-|+. +|.+|..+|+.|+.+..+.. ...+ +.+..+.+...-.+..+.. .+ -.+..+|+..|+...
T Consensus 159 k~v~vIG~S~ivG~P-la~lL~~~gatVtv~~s~t~-~l~~~~~~ADIVI~avg~~~~v~~-~~-ik~GavVIDvgin~~ 234 (284)
T PRK14179 159 KHAVVIGRSNIVGKP-MAQLLLDKNATVTLTHSRTR-NLAEVARKADILVVAIGRGHFVTK-EF-VKEGAVVIDVGMNRD 234 (284)
T ss_pred CEEEEECCCCcCcHH-HHHHHHHCCCEEEEECCCCC-CHHHHHhhCCEEEEecCccccCCH-HH-ccCCcEEEEecceec
Confidence 67999999 677775 68888889999999854322 2332 2333333322222222211 01 135678888777652
Q ss_pred CHHHHHHHHCCCCeeeHHHHHHHHhcCCcEEEEeCCCCchHHHHHHHHHHHHc
Q 009293 154 NVEILHAKSVGVPIYKRDYWLAKLTEKYNLIAVSGSHGKSTTASMLAYVLKAM 206 (538)
Q Consensus 154 ~~~l~~a~~~gi~vi~~~~~l~~~~~~~~vI~VTGTnGKTTTt~ml~~iL~~~ 206 (538)
. .| .+....+|-.-......+-=|-|=-|.=||+.++.++++++
T Consensus 235 ~--------~g-kl~GDVdf~~v~~~a~~iTPVPGGVGp~T~a~L~~N~~~a~ 278 (284)
T PRK14179 235 E--------NG-KLIGDVDFDEVAEVASYITPVPGGVGPMTITMLMEQTYQAA 278 (284)
T ss_pred C--------CC-CeecCccHHHHHhhccEecCCCCCchHHHHHHHHHHHHHHH
Confidence 0 01 23333332211111122333457799999999999999875
No 83
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=88.67 E-value=3.4 Score=41.70 Aligned_cols=118 Identities=21% Similarity=0.095 Sum_probs=66.5
Q ss_pred ceEEEEeec-hhhHHHHHHHHHhCCCcEEEecCCCChhHHH-HHHCCCeEEeCCCCCCcCCCCCCCCCCEEEEcCCCCCC
Q 009293 76 GWIHFVGIG-GSGLSALAKLALKQGFEVSGSDLVWSSYMEG-LLEAGANLHIGHSVSNIQGNDGSRFPNAVVASSAIPQD 153 (538)
Q Consensus 76 ~~v~vlG~G-~sG~~~la~~l~~~G~~v~g~D~~~~~~~~~-~~~~Ga~~~~~~~~~~~~~~~~~~~~d~vvvsp~i~~~ 153 (538)
++|.|||-| .-|+. +|.+|..+|+.|+..+.... .+.+ ..+..+.+...-.+..+.. ++- .+..+|+..|+.+.
T Consensus 158 k~vvVvGrs~~VG~P-la~lL~~~gAtVtv~hs~t~-~l~~~~~~ADIvV~AvG~p~~i~~-~~v-k~GavVIDvGi~~~ 233 (285)
T PRK14191 158 KDVVIIGASNIVGKP-LAMLMLNAGASVSVCHILTK-DLSFYTQNADIVCVGVGKPDLIKA-SMV-KKGAVVVDIGINRL 233 (285)
T ss_pred CEEEEECCCchhHHH-HHHHHHHCCCEEEEEeCCcH-HHHHHHHhCCEEEEecCCCCcCCH-HHc-CCCcEEEEeecccc
Confidence 668999999 66775 58888889999998764322 2222 2222333222222222211 010 35678888887542
Q ss_pred CHHHHHHHHCCCCeeeHHHHHHHHhcCCcEEEEeCCCCchHHHHHHHHHHHHc
Q 009293 154 NVEILHAKSVGVPIYKRDYWLAKLTEKYNLIAVSGSHGKSTTASMLAYVLKAM 206 (538)
Q Consensus 154 ~~~l~~a~~~gi~vi~~~~~l~~~~~~~~vI~VTGTnGKTTTt~ml~~iL~~~ 206 (538)
. .| .+....++-.-......+.=|-|--|.=||+.++.++++.+
T Consensus 234 ~--------~g-klvGDvd~e~v~~~a~~iTPVPGGVGpvT~a~L~~N~~~a~ 277 (285)
T PRK14191 234 N--------DG-RLVGDVDFENVAPKASFITPVPGGVGPMTIVSLLENTLIAA 277 (285)
T ss_pred c--------CC-ceeccccHHHHhhhccEEecCCCCChHHHHHHHHHHHHHHH
Confidence 1 01 23333333211112223445558899999999999999875
No 84
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=88.50 E-value=4 Score=43.76 Aligned_cols=117 Identities=15% Similarity=0.142 Sum_probs=69.4
Q ss_pred CceEEEEeechhhHHHHHHHHHhCCCcEEEecCCCChhHHHHHHCCCeE---------------EeCCCCCCcCCCCCCC
Q 009293 75 KGWIHFVGIGGSGLSALAKLALKQGFEVSGSDLVWSSYMEGLLEAGANL---------------HIGHSVSNIQGNDGSR 139 (538)
Q Consensus 75 ~~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~~~~~~~~~~Ga~~---------------~~~~~~~~~~~~~~~~ 139 (538)
..+|.|+|+|--|... |..|+. |++|.|+|.+.. -++.+. .|... ........+ .
T Consensus 6 ~mkI~vIGlGyvGlpm-A~~la~-~~~V~g~D~~~~-~ve~l~-~G~~~~~e~~~~~l~~~g~l~~t~~~~~~------~ 75 (425)
T PRK15182 6 EVKIAIIGLGYVGLPL-AVEFGK-SRQVVGFDVNKK-RILELK-NGVDVNLETTEEELREARYLKFTSEIEKI------K 75 (425)
T ss_pred CCeEEEECcCcchHHH-HHHHhc-CCEEEEEeCCHH-HHHHHH-CcCCCCCCCCHHHHHhhCCeeEEeCHHHH------c
Confidence 3579999999999875 444664 799999997542 233333 44431 111111112 2
Q ss_pred CCCEEEEcCCCCCCC---HHHHHHHHCCCCeeeHHHHHHHHhcCCcEEEEeCCCCchHHHHHHHHHHHH-cCC
Q 009293 140 FPNAVVASSAIPQDN---VEILHAKSVGVPIYKRDYWLAKLTEKYNLIAVSGSHGKSTTASMLAYVLKA-MGD 208 (538)
Q Consensus 140 ~~d~vvvsp~i~~~~---~~l~~a~~~gi~vi~~~~~l~~~~~~~~vI~VTGTnGKTTTt~ml~~iL~~-~G~ 208 (538)
.+|++++..+-|.+. +.+..... -.+-+....++..+|-+.-|..=+||..++..++.+ .|.
T Consensus 76 ~advvii~Vptp~~~~~~~dl~~v~~-------a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~~~~g~ 141 (425)
T PRK15182 76 ECNFYIITVPTPINTYKQPDLTPLIK-------ASETVGTVLNRGDIVVYESTVYPGCTEEECVPILARMSGM 141 (425)
T ss_pred CCCEEEEEcCCCCCCCCCcchHHHHH-------HHHHHHHhcCCCCEEEEecCCCCcchHHHHHHHHHhccCC
Confidence 578888877655322 22222210 012222222345688899999999999999998876 344
No 85
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=88.45 E-value=0.83 Score=40.33 Aligned_cols=69 Identities=22% Similarity=0.200 Sum_probs=36.9
Q ss_pred cCCCceEEEEeechhhHHHHHHHHHhCCCcEEEecCCCChhHHHHHHC-CCeEEeCCCCCCcCCCCCCCCCCEEEEcC
Q 009293 72 KNRKGWIHFVGIGGSGLSALAKLALKQGFEVSGSDLVWSSYMEGLLEA-GANLHIGHSVSNIQGNDGSRFPNAVVASS 148 (538)
Q Consensus 72 ~~~~~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~~~~~~~~~~-Ga~~~~~~~~~~~~~~~~~~~~d~vvvsp 148 (538)
+...-+|.|||.|+-|.+ |++.|...|+.|.+.-.+..+-.+.+... +...+.. ..+.. ...|++++..
T Consensus 7 ~~~~l~I~iIGaGrVG~~-La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~~~~~~-~~~~~------~~aDlv~iav 76 (127)
T PF10727_consen 7 QAARLKIGIIGAGRVGTA-LARALARAGHEVVGVYSRSPASAERAAAFIGAGAILD-LEEIL------RDADLVFIAV 76 (127)
T ss_dssp -----EEEEECTSCCCCH-HHHHHHHTTSEEEEESSCHH-HHHHHHC--TT------TTGGG------CC-SEEEE-S
T ss_pred CCCccEEEEECCCHHHHH-HHHHHHHCCCeEEEEEeCCcccccccccccccccccc-ccccc------ccCCEEEEEe
Confidence 334457999999999996 68999999999998754322222333221 2222221 11111 2589999975
No 86
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=88.28 E-value=4.4 Score=44.03 Aligned_cols=114 Identities=20% Similarity=0.172 Sum_probs=61.2
Q ss_pred EEEEeechhhHHHHHHHHHhCCCcEEEecCCCChhHHHHHHC---CCeEEeCCCCCCcCCCCCCCCCCEEEEcCCCCCCC
Q 009293 78 IHFVGIGGSGLSALAKLALKQGFEVSGSDLVWSSYMEGLLEA---GANLHIGHSVSNIQGNDGSRFPNAVVASSAIPQDN 154 (538)
Q Consensus 78 v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~~~~~~~~~~---Ga~~~~~~~~~~~~~~~~~~~~d~vvvsp~i~~~~ 154 (538)
|.|||+|.-|.+ +|+-|+.+|++|.++|.+.. ..+.+.+. |..+.......++.. ....+|+|++.. |+..
T Consensus 2 IG~IGLG~MG~~-mA~nL~~~G~~V~v~drt~~-~~~~l~~~~~~g~~~~~~~s~~e~v~--~l~~~dvIil~v--~~~~ 75 (467)
T TIGR00873 2 IGVIGLAVMGSN-LALNMADHGFTVSVYNRTPE-KTDEFLAEHAKGKKIVGAYSIEEFVQ--SLERPRKIMLMV--KAGA 75 (467)
T ss_pred EEEEeeHHHHHH-HHHHHHhcCCeEEEEeCCHH-HHHHHHhhccCCCCceecCCHHHHHh--hcCCCCEEEEEC--CCcH
Confidence 789999999986 57777889999999996543 34445444 211111112111110 011467777653 2222
Q ss_pred HHHHHHHHCCCCeeeHHHHHHHHhcCCcEEEEeCCCCchHHHHHHHHHHHHcCCC
Q 009293 155 VEILHAKSVGVPIYKRDYWLAKLTEKYNLIAVSGSHGKSTTASMLAYVLKAMGDD 209 (538)
Q Consensus 155 ~~l~~a~~~gi~vi~~~~~l~~~~~~~~vI~VTGTnGKTTTt~ml~~iL~~~G~~ 209 (538)
.+.... ..+.... .. .-|-|-+||.+...+.-..+.|.+.|..
T Consensus 76 -~v~~Vi---------~~l~~~L-~~-g~iIID~gns~~~~t~~~~~~l~~~gi~ 118 (467)
T TIGR00873 76 -PVDAVI---------NQLLPLL-EK-GDIIIDGGNSHYPDTERRYKELKAKGIL 118 (467)
T ss_pred -HHHHHH---------HHHHhhC-CC-CCEEEECCCcCHHHHHHHHHHHHhcCCE
Confidence 222211 0222221 22 2455777777755555556678887753
No 87
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=88.06 E-value=2.8 Score=40.12 Aligned_cols=65 Identities=22% Similarity=0.184 Sum_probs=42.0
Q ss_pred ceEEEEeechhhHHHHHHHHHhCCCcEEEecCCCCh-hHHHHHHCCCeEEeCCCCCCcCCCCCCCCCCEEEEc
Q 009293 76 GWIHFVGIGGSGLSALAKLALKQGFEVSGSDLVWSS-YMEGLLEAGANLHIGHSVSNIQGNDGSRFPNAVVAS 147 (538)
Q Consensus 76 ~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~~-~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~d~vvvs 147 (538)
+++.++|.|..|-+ ||+.++..|++|..--.+.++ ....+...+..+.-+...+-. +..|+|++.
T Consensus 2 ~~~~i~GtGniG~a-lA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~~i~~~~~~dA~------~~aDVVvLA 67 (211)
T COG2085 2 MIIAIIGTGNIGSA-LALRLAKAGHEVIIGSSRGPKALAAAAAALGPLITGGSNEDAA------ALADVVVLA 67 (211)
T ss_pred cEEEEeccChHHHH-HHHHHHhCCCeEEEecCCChhHHHHHHHhhccccccCChHHHH------hcCCEEEEe
Confidence 45789999999975 689999999999976544443 333344456554333333222 247888885
No 88
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=87.89 E-value=3.1 Score=42.13 Aligned_cols=33 Identities=30% Similarity=0.264 Sum_probs=27.4
Q ss_pred ceEEEEeechhhHHHHHHHHHhCCCcEEEecCCC
Q 009293 76 GWIHFVGIGGSGLSALAKLALKQGFEVSGSDLVW 109 (538)
Q Consensus 76 ~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~ 109 (538)
++|.|||.|.-|.+ +|..|+..|++|.++|.+.
T Consensus 5 ~~V~vIG~G~mG~~-iA~~l~~~G~~V~~~d~~~ 37 (295)
T PLN02545 5 KKVGVVGAGQMGSG-IAQLAAAAGMDVWLLDSDP 37 (295)
T ss_pred CEEEEECCCHHHHH-HHHHHHhcCCeEEEEeCCH
Confidence 56999999999987 4667778899999999654
No 89
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=87.85 E-value=1.4 Score=43.04 Aligned_cols=76 Identities=26% Similarity=0.288 Sum_probs=49.4
Q ss_pred eEEEEeechhhHHHHHHHHHhCCCcEEEecCCCChhHHH-HH-HCCCeEEeCCCCC-C-cCCCCCCCCCCEEEEcCCCCC
Q 009293 77 WIHFVGIGGSGLSALAKLALKQGFEVSGSDLVWSSYMEG-LL-EAGANLHIGHSVS-N-IQGNDGSRFPNAVVASSAIPQ 152 (538)
Q Consensus 77 ~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~~~~~~-~~-~~Ga~~~~~~~~~-~-~~~~~~~~~~d~vvvsp~i~~ 152 (538)
++.|+|+|.-|++ +|+.|...|+.|...|.+.. ..++ +. +.+..++.++... + +.. .+-..+|.+|+..+-..
T Consensus 2 ~iiIiG~G~vG~~-va~~L~~~g~~Vv~Id~d~~-~~~~~~~~~~~~~~v~gd~t~~~~L~~-agi~~aD~vva~t~~d~ 78 (225)
T COG0569 2 KIIIIGAGRVGRS-VARELSEEGHNVVLIDRDEE-RVEEFLADELDTHVVIGDATDEDVLEE-AGIDDADAVVAATGNDE 78 (225)
T ss_pred EEEEECCcHHHHH-HHHHHHhCCCceEEEEcCHH-HHHHHhhhhcceEEEEecCCCHHHHHh-cCCCcCCEEEEeeCCCH
Confidence 5789999999997 58999999999999996543 2333 22 3577776663321 1 111 12236899888876444
Q ss_pred CCH
Q 009293 153 DNV 155 (538)
Q Consensus 153 ~~~ 155 (538)
.+.
T Consensus 79 ~N~ 81 (225)
T COG0569 79 VNS 81 (225)
T ss_pred HHH
Confidence 443
No 90
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=87.60 E-value=1.3 Score=37.37 Aligned_cols=80 Identities=20% Similarity=0.161 Sum_probs=44.7
Q ss_pred ceEEEEeechhhHHHHHHHHHhCCCcEEEecCCCChhHHHHHHCCCeEEeCCCCCCcCCCCCCCCCCEEEEcCCCCCCCH
Q 009293 76 GWIHFVGIGGSGLSALAKLALKQGFEVSGSDLVWSSYMEGLLEAGANLHIGHSVSNIQGNDGSRFPNAVVASSAIPQDNV 155 (538)
Q Consensus 76 ~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~d~vvvsp~i~~~~~ 155 (538)
++|+|+|.|..|..- ++.|...|++|+...... ...+..+.+.-.....++ +.+++|+..++.+.-+.
T Consensus 8 ~~vlVvGgG~va~~k-~~~Ll~~gA~v~vis~~~-----~~~~~~i~~~~~~~~~~l------~~~~lV~~at~d~~~n~ 75 (103)
T PF13241_consen 8 KRVLVVGGGPVAARK-ARLLLEAGAKVTVISPEI-----EFSEGLIQLIRREFEEDL------DGADLVFAATDDPELNE 75 (103)
T ss_dssp -EEEEEEESHHHHHH-HHHHCCCTBEEEEEESSE-----HHHHTSCEEEESS-GGGC------TTESEEEE-SS-HHHHH
T ss_pred CEEEEECCCHHHHHH-HHHHHhCCCEEEEECCch-----hhhhhHHHHHhhhHHHHH------hhheEEEecCCCHHHHH
Confidence 679999999999876 455667899999887321 223344444322222223 25789998865433232
Q ss_pred H-HHHHHHCCCCe
Q 009293 156 E-ILHAKSVGVPI 167 (538)
Q Consensus 156 ~-l~~a~~~gi~v 167 (538)
. ...+++.++++
T Consensus 76 ~i~~~a~~~~i~v 88 (103)
T PF13241_consen 76 AIYADARARGILV 88 (103)
T ss_dssp HHHHHHHHTTSEE
T ss_pred HHHHHHhhCCEEE
Confidence 2 22333445444
No 91
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=87.53 E-value=5.6 Score=43.46 Aligned_cols=116 Identities=16% Similarity=0.068 Sum_probs=65.4
Q ss_pred ceEEEEeechhhHHHHHHHHHhCCCcEEEecCCCChhHHHHHH----CCCeEEe-CCCCCCcCCCCCCCCCCEEEEcCCC
Q 009293 76 GWIHFVGIGGSGLSALAKLALKQGFEVSGSDLVWSSYMEGLLE----AGANLHI-GHSVSNIQGNDGSRFPNAVVASSAI 150 (538)
Q Consensus 76 ~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~~~~~~~~~----~Ga~~~~-~~~~~~~~~~~~~~~~d~vvvsp~i 150 (538)
.+|.|||+|.-|.+ +|+-|+.+|++|.++|...+ -.+.+.+ .|+.... .....++.. ..+.+|+|+...
T Consensus 7 ~~IG~IGLG~MG~~-mA~nL~~~G~~V~V~NRt~~-k~~~l~~~~~~~Ga~~~~~a~s~~e~v~--~l~~~dvIi~~v-- 80 (493)
T PLN02350 7 SRIGLAGLAVMGQN-LALNIAEKGFPISVYNRTTS-KVDETVERAKKEGNLPLYGFKDPEDFVL--SIQKPRSVIILV-- 80 (493)
T ss_pred CCEEEEeeHHHHHH-HHHHHHhCCCeEEEECCCHH-HHHHHHHhhhhcCCcccccCCCHHHHHh--cCCCCCEEEEEC--
Confidence 35899999999986 57777889999999996533 2333433 2653221 122222210 011478888764
Q ss_pred CCCCHHHHHHHHCCCCeeeHHHHHHHHhcCCcEEEEeCCCCchHHHHHHHHHHHHcCCC
Q 009293 151 PQDNVEILHAKSVGVPIYKRDYWLAKLTEKYNLIAVSGSHGKSTTASMLAYVLKAMGDD 209 (538)
Q Consensus 151 ~~~~~~l~~a~~~gi~vi~~~~~l~~~~~~~~vI~VTGTnGKTTTt~ml~~iL~~~G~~ 209 (538)
++...+.... ..++... ....+|.-+||..-.+|..+ ++.+++.|..
T Consensus 81 -~~~~aV~~Vi---------~gl~~~l-~~G~iiID~sT~~~~~t~~~-~~~l~~~Gi~ 127 (493)
T PLN02350 81 -KAGAPVDQTI---------KALSEYM-EPGDCIIDGGNEWYENTERR-IKEAAEKGLL 127 (493)
T ss_pred -CCcHHHHHHH---------HHHHhhc-CCCCEEEECCCCCHHHHHHH-HHHHHHcCCe
Confidence 2333333221 1222222 23456666666666666666 6667777864
No 92
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=87.50 E-value=0.62 Score=36.21 Aligned_cols=28 Identities=36% Similarity=0.459 Sum_probs=23.4
Q ss_pred EEeechhhHHHHHHHHHhCCCcEEEecCC
Q 009293 80 FVGIGGSGLSALAKLALKQGFEVSGSDLV 108 (538)
Q Consensus 80 vlG~G~sG~~~la~~l~~~G~~v~g~D~~ 108 (538)
|||.|.+|+++ |..|++.|.+|...+..
T Consensus 1 IiGaG~sGl~a-A~~L~~~g~~v~v~E~~ 28 (68)
T PF13450_consen 1 IIGAGISGLAA-AYYLAKAGYRVTVFEKN 28 (68)
T ss_dssp EES-SHHHHHH-HHHHHHTTSEEEEEESS
T ss_pred CEeeCHHHHHH-HHHHHHCCCcEEEEecC
Confidence 68999999987 78888899999999843
No 93
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=87.14 E-value=1.7 Score=41.50 Aligned_cols=105 Identities=15% Similarity=0.142 Sum_probs=63.1
Q ss_pred ceEEEEeechhhHHHHHHHHHhCCCcEEEecCCCChhHHHHHHC-CCeEEeCCCCCCcCCCCCCCCCCEEEEcCCCCCCC
Q 009293 76 GWIHFVGIGGSGLSALAKLALKQGFEVSGSDLVWSSYMEGLLEA-GANLHIGHSVSNIQGNDGSRFPNAVVASSAIPQDN 154 (538)
Q Consensus 76 ~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~~~~~~~~~~-Ga~~~~~~~~~~~~~~~~~~~~d~vvvsp~i~~~~ 154 (538)
++|.|+|+|..|+.+ |+.|...|++|.++|.+.. -...+.+. |+...-... +. ...+|+++-.. + .
T Consensus 29 k~v~I~G~G~vG~~~-A~~L~~~G~~Vvv~D~~~~-~~~~~~~~~g~~~v~~~~---l~----~~~~Dv~vp~A-~--~- 95 (200)
T cd01075 29 KTVAVQGLGKVGYKL-AEHLLEEGAKLIVADINEE-AVARAAELFGATVVAPEE---IY----SVDADVFAPCA-L--G- 95 (200)
T ss_pred CEEEEECCCHHHHHH-HHHHHHCCCEEEEEcCCHH-HHHHHHHHcCCEEEcchh---hc----cccCCEEEecc-c--c-
Confidence 569999999999975 7888889999999996532 22333333 665432211 11 11467665321 0 0
Q ss_pred HHHHHHHHCCCCeeeHHHHHHHHhcCCcEEEEeCCCCchHHHHHHHHHHHHcCCC
Q 009293 155 VEILHAKSVGVPIYKRDYWLAKLTEKYNLIAVSGSHGKSTTASMLAYVLKAMGDD 209 (538)
Q Consensus 155 ~~l~~a~~~gi~vi~~~~~l~~~~~~~~vI~VTGTnGKTTTt~ml~~iL~~~G~~ 209 (538)
.++.. +.+.+. + .-+-+-|.|+-+|. .--..+|++.|..
T Consensus 96 -----------~~I~~-~~~~~l--~-~~~v~~~AN~~~~~-~~~~~~L~~~Gi~ 134 (200)
T cd01075 96 -----------GVIND-DTIPQL--K-AKAIAGAANNQLAD-PRHGQMLHERGIL 134 (200)
T ss_pred -----------cccCH-HHHHHc--C-CCEEEECCcCccCC-HhHHHHHHHCCCE
Confidence 12222 222222 2 23678899998875 4568899999864
No 94
>COG0132 BioD Dethiobiotin synthetase [Coenzyme metabolism]
Probab=87.04 E-value=0.89 Score=44.14 Aligned_cols=32 Identities=28% Similarity=0.431 Sum_probs=28.7
Q ss_pred CcEEEEeCCC---CchHHHHHHHHHHHHcCCCeEE
Q 009293 181 YNLIAVSGSH---GKSTTASMLAYVLKAMGDDLTA 212 (538)
Q Consensus 181 ~~vI~VTGTn---GKTTTt~ml~~iL~~~G~~v~~ 212 (538)
.+.+-||||+ |||.+++.+.+.|+++|+++..
T Consensus 2 ~~~~fVtGTDT~VGKTv~S~aL~~~l~~~g~~~~~ 36 (223)
T COG0132 2 MKRFFVTGTDTGVGKTVVSAALAQALKQQGYSVAG 36 (223)
T ss_pred CceEEEEeCCCCccHHHHHHHHHHHHHhCCCeeEE
Confidence 4689999996 9999999999999999998754
No 95
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=86.77 E-value=9.9 Score=43.20 Aligned_cols=75 Identities=21% Similarity=0.254 Sum_probs=50.0
Q ss_pred ceEEEEeechhhHHHHHHHHHhCCCcEEEecCCCC--------------------hhHHHHHHCCCeEEeCCCC-CCcCC
Q 009293 76 GWIHFVGIGGSGLSALAKLALKQGFEVSGSDLVWS--------------------SYMEGLLEAGANLHIGHSV-SNIQG 134 (538)
Q Consensus 76 ~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~--------------------~~~~~~~~~Ga~~~~~~~~-~~~~~ 134 (538)
++|+|||.|..|+++ |..|+..|++|+..|.... ..++.+.+.|+.+..+... .++..
T Consensus 194 k~VaIIGaGpAGl~a-A~~La~~G~~Vtv~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~Gv~i~~~~~v~~dv~~ 272 (652)
T PRK12814 194 KKVAIIGAGPAGLTA-AYYLLRKGHDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFRFNTVFGRDITL 272 (652)
T ss_pred CEEEEECCCHHHHHH-HHHHHHCCCcEEEEecCCCCCceeeecCCCCCCCHHHHHHHHHHHHHcCCEEEeCCcccCccCH
Confidence 579999999999987 7888889999999985421 1134566789988766421 11100
Q ss_pred CCCCCCCCEEEEcCCCC
Q 009293 135 NDGSRFPNAVVASSAIP 151 (538)
Q Consensus 135 ~~~~~~~d~vvvsp~i~ 151 (538)
......+|.|++..|..
T Consensus 273 ~~~~~~~DaVilAtGa~ 289 (652)
T PRK12814 273 EELQKEFDAVLLAVGAQ 289 (652)
T ss_pred HHHHhhcCEEEEEcCCC
Confidence 00112489999988764
No 96
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=86.69 E-value=4.5 Score=40.44 Aligned_cols=33 Identities=21% Similarity=0.257 Sum_probs=26.6
Q ss_pred CceEEEEeechhhHHHHHHHHHhCCCcEEEecCC
Q 009293 75 KGWIHFVGIGGSGLSALAKLALKQGFEVSGSDLV 108 (538)
Q Consensus 75 ~~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~ 108 (538)
.++++|+|.|+.|++. +..|+..|++|...+..
T Consensus 117 ~k~vliiGaGg~g~ai-a~~L~~~g~~v~v~~R~ 149 (270)
T TIGR00507 117 NQRVLIIGAGGAARAV-ALPLLKADCNVIIANRT 149 (270)
T ss_pred CCEEEEEcCcHHHHHH-HHHHHHCCCEEEEEeCC
Confidence 4679999999999986 45556789999998854
No 97
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=86.60 E-value=4.3 Score=41.86 Aligned_cols=44 Identities=23% Similarity=0.210 Sum_probs=33.4
Q ss_pred eEEEEeechhhHHHHHHHHHhCCCcEEEecCCCChhHHHHHHCCCeE
Q 009293 77 WIHFVGIGGSGLSALAKLALKQGFEVSGSDLVWSSYMEGLLEAGANL 123 (538)
Q Consensus 77 ~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~~~~~~~~~~Ga~~ 123 (538)
+|.|||.|.-|.+ +|..|+..|++|.+.|.. +..+.+.+.|..+
T Consensus 4 kI~IiG~G~mG~~-~A~~L~~~G~~V~~~~r~--~~~~~~~~~g~~~ 47 (341)
T PRK08229 4 RICVLGAGSIGCY-LGGRLAAAGADVTLIGRA--RIGDELRAHGLTL 47 (341)
T ss_pred eEEEECCCHHHHH-HHHHHHhcCCcEEEEecH--HHHHHHHhcCcee
Confidence 5899999999986 577788899999999853 2344556667654
No 98
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=86.46 E-value=3.2 Score=41.89 Aligned_cols=116 Identities=18% Similarity=0.173 Sum_probs=64.6
Q ss_pred ceEEEEeech-hhHHHHHHHHHhCCCcEEEecCCCChhHHHHHHCCCeEEeC--CCCCCcCCCCCCCCCCEEEEcCCCCC
Q 009293 76 GWIHFVGIGG-SGLSALAKLALKQGFEVSGSDLVWSSYMEGLLEAGANLHIG--HSVSNIQGNDGSRFPNAVVASSAIPQ 152 (538)
Q Consensus 76 ~~v~vlG~G~-sG~~~la~~l~~~G~~v~g~D~~~~~~~~~~~~~Ga~~~~~--~~~~~~~~~~~~~~~d~vvvsp~i~~ 152 (538)
+++.|+|-+. .|+ .+|.+|..+|+.|+..+.... .+.+.. +.+.+++. -.+..+.. ++ -..+.+|+..|+..
T Consensus 165 k~vvViGrs~iVGk-Pla~lL~~~~atVtv~hs~T~-~l~~~~-~~ADIvv~AvG~p~~i~~-~~-vk~gavVIDvGin~ 239 (287)
T PRK14176 165 KNAVIVGHSNVVGK-PMAAMLLNRNATVSVCHVFTD-DLKKYT-LDADILVVATGVKHLIKA-DM-VKEGAVIFDVGITK 239 (287)
T ss_pred CEEEEECCCcccHH-HHHHHHHHCCCEEEEEeccCC-CHHHHH-hhCCEEEEccCCccccCH-HH-cCCCcEEEEecccc
Confidence 6689999998 565 578888899999998874322 222221 23333331 12221211 11 13567888888753
Q ss_pred CCHHHHHHHHCCCCeeeHHHHHHHHhcCCcEEEEeCCCCchHHHHHHHHHHHHc
Q 009293 153 DNVEILHAKSVGVPIYKRDYWLAKLTEKYNLIAVSGSHGKSTTASMLAYVLKAM 206 (538)
Q Consensus 153 ~~~~l~~a~~~gi~vi~~~~~l~~~~~~~~vI~VTGTnGKTTTt~ml~~iL~~~ 206 (538)
.+ | .+....++-.-......+--|-|--|.-|++.++.++++.+
T Consensus 240 ~~---------g-kl~GDvd~~~~~~~a~~iTPVPGGVGp~T~a~L~~n~~~a~ 283 (287)
T PRK14176 240 EE---------D-KVYGDVDFENVIKKASLITPVPGGVGPLTIAMLMKHVLMCA 283 (287)
T ss_pred cC---------C-CccCCcCHHHHHhhceEcCCCCCCChHHHHHHHHHHHHHHH
Confidence 11 1 12222222111111122333446789999999999999875
No 99
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=86.36 E-value=6.6 Score=39.88 Aligned_cols=112 Identities=15% Similarity=0.124 Sum_probs=61.2
Q ss_pred eEEEEeechhhHHHHHHHHHhCCCcEEEecCCCChhHHHHHHCCCeEEeCCCCCCcCCCCCCCCCCEEEEcCCCCCCCHH
Q 009293 77 WIHFVGIGGSGLSALAKLALKQGFEVSGSDLVWSSYMEGLLEAGANLHIGHSVSNIQGNDGSRFPNAVVASSAIPQDNVE 156 (538)
Q Consensus 77 ~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~d~vvvsp~i~~~~~~ 156 (538)
+|.|||+|.-|.+ +|.-|+..|++|.++|.+. +..+.+.+.|+...- ...++.. ..+.+|+|++.. ++...
T Consensus 2 ~Ig~IGlG~mG~~-mA~~L~~~g~~v~v~dr~~-~~~~~~~~~g~~~~~--s~~~~~~--~~~~advVi~~v---p~~~~ 72 (299)
T PRK12490 2 KLGLIGLGKMGGN-MAERLREDGHEVVGYDVNQ-EAVDVAGKLGITARH--SLEELVS--KLEAPRTIWVMV---PAGEV 72 (299)
T ss_pred EEEEEcccHHHHH-HHHHHHhCCCEEEEEECCH-HHHHHHHHCCCeecC--CHHHHHH--hCCCCCEEEEEe---cCchH
Confidence 4889999999986 5677778999999998643 234556667765422 2211110 001257777653 22222
Q ss_pred HHHHHHCCCCeeeHHHHHHHHhcCCcEEEEeCCCCchHHHHHHHHHHHHcCC
Q 009293 157 ILHAKSVGVPIYKRDYWLAKLTEKYNLIAVSGSHGKSTTASMLAYVLKAMGD 208 (538)
Q Consensus 157 l~~a~~~gi~vi~~~~~l~~~~~~~~vI~VTGTnGKTTTt~ml~~iL~~~G~ 208 (538)
+....+ .+.... ++.++|.-++|..-.++..+ ++.+++.|.
T Consensus 73 ~~~v~~---------~i~~~l-~~g~ivid~st~~~~~~~~~-~~~~~~~g~ 113 (299)
T PRK12490 73 TESVIK---------DLYPLL-SPGDIVVDGGNSRYKDDLRR-AEELAERGI 113 (299)
T ss_pred HHHHHH---------HHhccC-CCCCEEEECCCCCchhHHHH-HHHHHHcCC
Confidence 222210 111111 23356666666655555555 556777774
No 100
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=86.33 E-value=1.1 Score=36.25 Aligned_cols=29 Identities=38% Similarity=0.454 Sum_probs=24.3
Q ss_pred EEEeCC--CCchHHHHHHHHHHHHcCCCeEE
Q 009293 184 IAVSGS--HGKSTTASMLAYVLKAMGDDLTA 212 (538)
Q Consensus 184 I~VTGT--nGKTTTt~ml~~iL~~~G~~v~~ 212 (538)
|.++|. .||||++..++..|++.|+++..
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~ 32 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLL 32 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 566765 69999999999999999988643
No 101
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=86.21 E-value=5.5 Score=43.02 Aligned_cols=75 Identities=17% Similarity=0.211 Sum_probs=48.8
Q ss_pred CceEEEEeechhhHHHHHHHHHhCCCcEEEecCCC---------------C-hh----HHHHHHCCCeEEeCCCC-CCcC
Q 009293 75 KGWIHFVGIGGSGLSALAKLALKQGFEVSGSDLVW---------------S-SY----MEGLLEAGANLHIGHSV-SNIQ 133 (538)
Q Consensus 75 ~~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~---------------~-~~----~~~~~~~Ga~~~~~~~~-~~~~ 133 (538)
.++|+|||.|..|+++ |..|+.+|++|+..|... . +. .+.+.+.|+.+..+... ..+.
T Consensus 133 ~~~V~IIG~G~aGl~a-A~~l~~~G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~~v~ 211 (449)
T TIGR01316 133 HKKVAVIGAGPAGLAC-ASELAKAGHSVTVFEALHKPGGVVTYGIPEFRLPKEIVVTEIKTLKKLGVTFRMNFLVGKTAT 211 (449)
T ss_pred CCEEEEECcCHHHHHH-HHHHHHCCCcEEEEecCCCCCcEeeecCCCccCCHHHHHHHHHHHHhCCcEEEeCCccCCcCC
Confidence 3579999999999987 788888999999988531 0 11 13456678888765321 1110
Q ss_pred CCCCCCCCCEEEEcCCC
Q 009293 134 GNDGSRFPNAVVASSAI 150 (538)
Q Consensus 134 ~~~~~~~~d~vvvsp~i 150 (538)
.......+|.||+..|.
T Consensus 212 ~~~~~~~yd~viiAtGa 228 (449)
T TIGR01316 212 LEELFSQYDAVFIGTGA 228 (449)
T ss_pred HHHHHhhCCEEEEeCCC
Confidence 00001247999998885
No 102
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=86.10 E-value=4.9 Score=40.59 Aligned_cols=33 Identities=21% Similarity=0.335 Sum_probs=27.9
Q ss_pred ceEEEEeechhhHHHHHHHHHhCCCcEEEecCCC
Q 009293 76 GWIHFVGIGGSGLSALAKLALKQGFEVSGSDLVW 109 (538)
Q Consensus 76 ~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~ 109 (538)
++|.|||.|.-|.+ +|..|+..|++|.++|.+.
T Consensus 5 ~kI~vIGaG~mG~~-iA~~la~~G~~V~l~d~~~ 37 (292)
T PRK07530 5 KKVGVIGAGQMGNG-IAHVCALAGYDVLLNDVSA 37 (292)
T ss_pred CEEEEECCcHHHHH-HHHHHHHCCCeEEEEeCCH
Confidence 56999999999986 4777788999999999653
No 103
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=86.04 E-value=3.8 Score=41.63 Aligned_cols=123 Identities=18% Similarity=0.077 Sum_probs=69.9
Q ss_pred ceEEEEeechhhHHHHHHHHHhCCCcEEEecCCCChhHHHHHHCCCeEEeC--CCCCCcCCCCCCCCCCEEEEcCCCCCC
Q 009293 76 GWIHFVGIGGSGLSALAKLALKQGFEVSGSDLVWSSYMEGLLEAGANLHIG--HSVSNIQGNDGSRFPNAVVASSAIPQD 153 (538)
Q Consensus 76 ~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~~~~~~~~~~Ga~~~~~--~~~~~~~~~~~~~~~d~vvvsp~i~~~ 153 (538)
++|.|||-+..---.||.+|..+|+.|+..+.+-. .+++.. +.+.+++. -.+..+.. ++- ++..+|+..|+...
T Consensus 168 k~vvVIGRS~iVGkPla~lL~~~~ATVtvchs~T~-nl~~~~-~~ADIvv~AvGk~~~i~~-~~v-k~gavVIDvGin~~ 243 (299)
T PLN02516 168 KKAVVVGRSNIVGLPVSLLLLKADATVTVVHSRTP-DPESIV-READIVIAAAGQAMMIKG-DWI-KPGAAVIDVGTNAV 243 (299)
T ss_pred CEEEEECCCccchHHHHHHHHHCCCEEEEeCCCCC-CHHHHH-hhCCEEEEcCCCcCccCH-HHc-CCCCEEEEeecccc
Confidence 66889998866555689999999999998875422 233322 23333331 22222211 110 35678888888652
Q ss_pred -CHHHHHHHHCCCCeeeHHHHHHHHhcCCcEEEEeCCCCchHHHHHHHHHHHHc
Q 009293 154 -NVEILHAKSVGVPIYKRDYWLAKLTEKYNLIAVSGSHGKSTTASMLAYVLKAM 206 (538)
Q Consensus 154 -~~~l~~a~~~gi~vi~~~~~l~~~~~~~~vI~VTGTnGKTTTt~ml~~iL~~~ 206 (538)
.+.. ..|..+....++-.-......+--|-|--|.=||+.++.++++.+
T Consensus 244 ~~~~~----~~g~kl~GDvd~e~v~~~a~~iTPVPGGVGp~T~a~L~~N~v~a~ 293 (299)
T PLN02516 244 SDPSK----KSGYRLVGDVDFAEVSKVAGWITPVPGGVGPMTVAMLLKNTVDGA 293 (299)
T ss_pred Ccccc----cCCCceEcCcChHHhhhhceEecCCCCCchHHHHHHHHHHHHHHH
Confidence 2110 113234444332111111223444557899999999999999875
No 104
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=85.98 E-value=1.8 Score=44.17 Aligned_cols=71 Identities=21% Similarity=0.168 Sum_probs=43.4
Q ss_pred ceEEEEeechhhHHHHHHHHHhCC--CcEEEecCCCCh---hHHHHHH----CCCeEE-eCCCCCCcCCCCCCCCCCEEE
Q 009293 76 GWIHFVGIGGSGLSALAKLALKQG--FEVSGSDLVWSS---YMEGLLE----AGANLH-IGHSVSNIQGNDGSRFPNAVV 145 (538)
Q Consensus 76 ~~v~vlG~G~sG~~~la~~l~~~G--~~v~g~D~~~~~---~~~~~~~----~Ga~~~-~~~~~~~~~~~~~~~~~d~vv 145 (538)
++|.|+|.|+.|.+. |..|+.+| .++...|.+.+. ...++.. .+.... ...+...+ ..+|+||
T Consensus 1 ~kI~IIGaG~vG~~~-a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~~l------~~aDIVI 73 (306)
T cd05291 1 RKVVIIGAGHVGSSF-AYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDYSDC------KDADIVV 73 (306)
T ss_pred CEEEEECCCHHHHHH-HHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCHHHh------CCCCEEE
Confidence 368999999999975 66777788 589999976432 1122211 122111 12222222 2689999
Q ss_pred EcCCCCCC
Q 009293 146 ASSAIPQD 153 (538)
Q Consensus 146 vsp~i~~~ 153 (538)
...|.|+.
T Consensus 74 itag~~~~ 81 (306)
T cd05291 74 ITAGAPQK 81 (306)
T ss_pred EccCCCCC
Confidence 99888753
No 105
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=85.87 E-value=0.97 Score=50.35 Aligned_cols=76 Identities=21% Similarity=0.208 Sum_probs=50.1
Q ss_pred ceEEEEeechhhHHHHHHHHHhCCCcEEEecCCCC--------------------hhHHHHHHCCCeEEeCCCC-CCcCC
Q 009293 76 GWIHFVGIGGSGLSALAKLALKQGFEVSGSDLVWS--------------------SYMEGLLEAGANLHIGHSV-SNIQG 134 (538)
Q Consensus 76 ~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~--------------------~~~~~~~~~Ga~~~~~~~~-~~~~~ 134 (538)
++|+|+|.|.+|+++ |.+|+.+|++|.+.|.... ..++.+.+.|+.+.++... .++..
T Consensus 138 ~~V~VIGaGpaGL~a-A~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~~~~~~~~~~ 216 (564)
T PRK12771 138 KRVAVIGGGPAGLSA-AYHLRRMGHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLGVRVGEDITL 216 (564)
T ss_pred CEEEEECCCHHHHHH-HHHHHHCCCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeCCEECCcCCH
Confidence 469999999999987 6777889999999984210 1234567789988775322 11100
Q ss_pred CCCCCCCCEEEEcCCCCC
Q 009293 135 NDGSRFPNAVVASSAIPQ 152 (538)
Q Consensus 135 ~~~~~~~d~vvvsp~i~~ 152 (538)
......+|.|+...|.+.
T Consensus 217 ~~~~~~~D~Vi~AtG~~~ 234 (564)
T PRK12771 217 EQLEGEFDAVFVAIGAQL 234 (564)
T ss_pred HHHHhhCCEEEEeeCCCC
Confidence 000124799999888654
No 106
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=85.60 E-value=4.6 Score=40.70 Aligned_cols=119 Identities=20% Similarity=0.096 Sum_probs=67.2
Q ss_pred ceEEEEeechhhHHHHHHHHHhCCCcEEEecCCCChhHHH-HHHCCCeEEeCCCCCCcCCCCCCCCCCEEEEcCCCCCCC
Q 009293 76 GWIHFVGIGGSGLSALAKLALKQGFEVSGSDLVWSSYMEG-LLEAGANLHIGHSVSNIQGNDGSRFPNAVVASSAIPQDN 154 (538)
Q Consensus 76 ~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~~~~~~-~~~~Ga~~~~~~~~~~~~~~~~~~~~d~vvvsp~i~~~~ 154 (538)
+++.|||-+..--..+|.+|..+|+.|+....+-. .+++ ..+..+.+...-.+..+.. ++ -....+|+..|+....
T Consensus 157 k~vvViGrS~iVGkPla~lL~~~~atVtichs~T~-~l~~~~~~ADIvI~AvG~p~~i~~-~~-vk~GavVIDvGin~~~ 233 (282)
T PRK14169 157 KRVVIVGRSNIVGRPLAGLMVNHDATVTIAHSKTR-NLKQLTKEADILVVAVGVPHFIGA-DA-VKPGAVVIDVGISRGA 233 (282)
T ss_pred CEEEEECCCccchHHHHHHHHHCCCEEEEECCCCC-CHHHHHhhCCEEEEccCCcCccCH-HH-cCCCcEEEEeeccccC
Confidence 67889998866555689999999999987754322 2333 2233333322222221211 01 0356788888876420
Q ss_pred HHHHHHHHCCCCeeeHHHHHHHHhcCCcEEEEeCCCCchHHHHHHHHHHHHc
Q 009293 155 VEILHAKSVGVPIYKRDYWLAKLTEKYNLIAVSGSHGKSTTASMLAYVLKAM 206 (538)
Q Consensus 155 ~~l~~a~~~gi~vi~~~~~l~~~~~~~~vI~VTGTnGKTTTt~ml~~iL~~~ 206 (538)
.| .+....++-.-......+-=|-|--|.-||+.++.++++.+
T Consensus 234 --------~g-kl~GDVd~~~v~~~a~~iTPVPGGVGp~T~a~L~~N~~~a~ 276 (282)
T PRK14169 234 --------DG-KLLGDVDEAAVAPIASAITPVPGGVGPMTIASLMAQTVTLA 276 (282)
T ss_pred --------CC-CeeecCcHHHHHhhccEecCCCCCcHHHHHHHHHHHHHHHH
Confidence 01 24444332211111222334458999999999999999875
No 107
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=85.57 E-value=4.5 Score=40.85 Aligned_cols=45 Identities=22% Similarity=0.243 Sum_probs=33.2
Q ss_pred eEEEEeechhhHHHHHHHHHhCCCcEEEecCCCChhHHHHHHCCCeE
Q 009293 77 WIHFVGIGGSGLSALAKLALKQGFEVSGSDLVWSSYMEGLLEAGANL 123 (538)
Q Consensus 77 ~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~~~~~~~~~~Ga~~ 123 (538)
+|+|+|.|..|.. +|..|+..|++|...+... +..+.+.+.|..+
T Consensus 2 ~I~IiG~G~~G~~-~a~~L~~~g~~V~~~~r~~-~~~~~~~~~g~~~ 46 (304)
T PRK06522 2 KIAILGAGAIGGL-FGAALAQAGHDVTLVARRG-AHLDALNENGLRL 46 (304)
T ss_pred EEEEECCCHHHHH-HHHHHHhCCCeEEEEECCh-HHHHHHHHcCCcc
Confidence 4899999999965 6788888999999998532 3445555667643
No 108
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=85.56 E-value=1.7 Score=47.22 Aligned_cols=77 Identities=21% Similarity=0.206 Sum_probs=50.7
Q ss_pred CceEEEEeechhhHHHHHHHHHhCCCcEEEecCCCC--------------------hhHHHHHHCCCeEEeCCCC-CCcC
Q 009293 75 KGWIHFVGIGGSGLSALAKLALKQGFEVSGSDLVWS--------------------SYMEGLLEAGANLHIGHSV-SNIQ 133 (538)
Q Consensus 75 ~~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~--------------------~~~~~~~~~Ga~~~~~~~~-~~~~ 133 (538)
.++|+|||.|.+|+++ |..|+.+|++|+..|.... ...+.+.+.|+.+.++... .++.
T Consensus 141 ~~~V~IIG~GpaGl~a-A~~l~~~G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~~~~ 219 (467)
T TIGR01318 141 GKRVAVIGAGPAGLAC-ADILARAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHLNCEVGRDIS 219 (467)
T ss_pred CCeEEEECCCHHHHHH-HHHHHHcCCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEECCCEeCCccC
Confidence 3579999999999987 7788889999999885421 1234567789988765321 1110
Q ss_pred CCCCCCCCCEEEEcCCCCC
Q 009293 134 GNDGSRFPNAVVASSAIPQ 152 (538)
Q Consensus 134 ~~~~~~~~d~vvvsp~i~~ 152 (538)
.......+|.|++..|.++
T Consensus 220 ~~~~~~~~D~vilAtGa~~ 238 (467)
T TIGR01318 220 LDDLLEDYDAVFLGVGTYR 238 (467)
T ss_pred HHHHHhcCCEEEEEeCCCC
Confidence 0000124788888887654
No 109
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=85.53 E-value=2.6 Score=42.54 Aligned_cols=114 Identities=18% Similarity=0.097 Sum_probs=61.9
Q ss_pred CceEEEEeech-hhHHHHHHHHHhCCCcEEEecCCCChhHHHHHHCCCeEEeCC--CCCCcCCCCCCCCCCEEEEcCCCC
Q 009293 75 KGWIHFVGIGG-SGLSALAKLALKQGFEVSGSDLVWSSYMEGLLEAGANLHIGH--SVSNIQGNDGSRFPNAVVASSAIP 151 (538)
Q Consensus 75 ~~~v~vlG~G~-sG~~~la~~l~~~G~~v~g~D~~~~~~~~~~~~~Ga~~~~~~--~~~~~~~~~~~~~~d~vvvsp~i~ 151 (538)
-++|.|+|.|+ .|++ ++.+|..+|++|+..+.+. ..+.+.. .++.+++.- .+..+.. .+. .+..+|+..++.
T Consensus 159 Gk~vvViG~gg~vGkp-ia~~L~~~gatVtv~~~~t-~~L~~~~-~~aDIvI~AtG~~~~v~~-~~l-k~gavViDvg~n 233 (283)
T PRK14192 159 GKHAVVVGRSAILGKP-MAMMLLNANATVTICHSRT-QNLPELV-KQADIIVGAVGKPELIKK-DWI-KQGAVVVDAGFH 233 (283)
T ss_pred CCEEEEECCcHHHHHH-HHHHHHhCCCEEEEEeCCc-hhHHHHh-ccCCEEEEccCCCCcCCH-HHc-CCCCEEEEEEEe
Confidence 35799999998 8886 5788888999999877522 2222222 244444421 1111110 000 234455555543
Q ss_pred CCCHHHHHHHHCCCCeeeHHHHHHHHhcCCcEEEEe---CCCCchHHHHHHHHHHHHc
Q 009293 152 QDNVEILHAKSVGVPIYKRDYWLAKLTEKYNLIAVS---GSHGKSTTASMLAYVLKAM 206 (538)
Q Consensus 152 ~~~~~l~~a~~~gi~vi~~~~~l~~~~~~~~vI~VT---GTnGKTTTt~ml~~iL~~~ 206 (538)
+.. .+ +..+.++-.-. -+.-.|| |--|.=|++.++.++++.+
T Consensus 234 ~~~--------~~--~~GDvd~~~~~---~~a~~itPvPGGVGp~T~a~L~~n~~~~~ 278 (283)
T PRK14192 234 PRD--------GG--GVGDIELQGIE---EIASAYTPVPGGVGPMTINTLIRQTVEAA 278 (283)
T ss_pred ecC--------CC--CcccccHHHhh---ccceEeCCCCCcChHHHHHHHHHHHHHHH
Confidence 310 00 12222322111 1234445 5699999999999999875
No 110
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=85.49 E-value=5.8 Score=40.00 Aligned_cols=120 Identities=18% Similarity=0.098 Sum_probs=69.9
Q ss_pred CceEEEEeechhhHHHHHHHHHhCCCcEEEecCCCChhHHH-HHHCCCeEEeCCCCCCcCCCCCCCCCCEEEEcCCCCCC
Q 009293 75 KGWIHFVGIGGSGLSALAKLALKQGFEVSGSDLVWSSYMEG-LLEAGANLHIGHSVSNIQGNDGSRFPNAVVASSAIPQD 153 (538)
Q Consensus 75 ~~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~~~~~~-~~~~Ga~~~~~~~~~~~~~~~~~~~~d~vvvsp~i~~~ 153 (538)
-+++.|+|-+..---.+|.+|..+|+.|+....+-. .+.+ ..+..+.+...-.+..+.. ++ -.+..+|+..|+...
T Consensus 157 Gk~vvVvGrS~iVGkPla~lL~~~~atVtichs~T~-~l~~~~~~ADIvI~AvG~~~~i~~-~~-vk~GavVIDvGin~~ 233 (284)
T PRK14170 157 GKRAVVIGRSNIVGKPVAQLLLNENATVTIAHSRTK-DLPQVAKEADILVVATGLAKFVKK-DY-IKPGAIVIDVGMDRD 233 (284)
T ss_pred CCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCC-CHHHHHhhCCEEEEecCCcCccCH-HH-cCCCCEEEEccCccc
Confidence 367899999877666789999999999998764322 2332 2333333322222222211 01 035678998888752
Q ss_pred CHHHHHHHHCCCCeeeHHHHHHHHhcCCcEEEEeCCCCchHHHHHHHHHHHHc
Q 009293 154 NVEILHAKSVGVPIYKRDYWLAKLTEKYNLIAVSGSHGKSTTASMLAYVLKAM 206 (538)
Q Consensus 154 ~~~l~~a~~~gi~vi~~~~~l~~~~~~~~vI~VTGTnGKTTTt~ml~~iL~~~ 206 (538)
. .| .+....+|-.-......+-=|-|--|.-||+.++.++++++
T Consensus 234 ~--------~g-kl~GDvdfe~~~~~a~~iTPVPGGVGpvT~a~L~~N~~~a~ 277 (284)
T PRK14170 234 E--------NN-KLCGDVDFDDVVEEAGFITPVPGGVGPMTITMLLANTLKAA 277 (284)
T ss_pred C--------CC-CeecccchHHHHhhccEecCCCCChHHHHHHHHHHHHHHHH
Confidence 1 01 23444343221112223344458899999999999999875
No 111
>PRK08655 prephenate dehydrogenase; Provisional
Probab=85.43 E-value=2.3 Score=45.82 Aligned_cols=64 Identities=23% Similarity=0.247 Sum_probs=40.7
Q ss_pred eEEEEe-echhhHHHHHHHHHhCCCcEEEecCCCChhHHHHHHCCCeEEeCCCCCCcCCCCCCCCCCEEEEcC
Q 009293 77 WIHFVG-IGGSGLSALAKLALKQGFEVSGSDLVWSSYMEGLLEAGANLHIGHSVSNIQGNDGSRFPNAVVASS 148 (538)
Q Consensus 77 ~v~vlG-~G~sG~~~la~~l~~~G~~v~g~D~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~d~vvvsp 148 (538)
+|.|+| .|..|.+ +|..|...|++|.++|.+.....+.+.+.|+.+.- .....+ ..+|+||+..
T Consensus 2 kI~IIGG~G~mG~s-lA~~L~~~G~~V~v~~r~~~~~~~~a~~~gv~~~~-~~~e~~------~~aDvVIlav 66 (437)
T PRK08655 2 KISIIGGTGGLGKW-FARFLKEKGFEVIVTGRDPKKGKEVAKELGVEYAN-DNIDAA------KDADIVIISV 66 (437)
T ss_pred EEEEEecCCHHHHH-HHHHHHHCCCEEEEEECChHHHHHHHHHcCCeecc-CHHHHh------ccCCEEEEec
Confidence 588997 7999987 57778889999999986543222334556764321 111111 2578888864
No 112
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=85.36 E-value=1.8 Score=49.05 Aligned_cols=76 Identities=20% Similarity=0.218 Sum_probs=49.9
Q ss_pred CceEEEEeechhhHHHHHHHHHhCCCcEEEecCCCC----------h----------hHHHHHHCCCeEEeCCCC-CCcC
Q 009293 75 KGWIHFVGIGGSGLSALAKLALKQGFEVSGSDLVWS----------S----------YMEGLLEAGANLHIGHSV-SNIQ 133 (538)
Q Consensus 75 ~~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~----------~----------~~~~~~~~Ga~~~~~~~~-~~~~ 133 (538)
.++|.|||.|.+|+++ |..|+.+|++|+..|.... . ..+.+.+.|+.+.++... .++.
T Consensus 310 ~kkVaIIG~GpaGl~a-A~~L~~~G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~~~ 388 (639)
T PRK12809 310 SEKVAVIGAGPAGLGC-ADILARAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEIGRDIT 388 (639)
T ss_pred CCEEEEECcCHHHHHH-HHHHHHcCCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCCccCCcCC
Confidence 4679999999999997 6777889999999985421 1 234456779988776432 1111
Q ss_pred CCCCCCCCCEEEEcCCCC
Q 009293 134 GNDGSRFPNAVVASSAIP 151 (538)
Q Consensus 134 ~~~~~~~~d~vvvsp~i~ 151 (538)
.......+|.|++..|..
T Consensus 389 ~~~l~~~~DaV~latGa~ 406 (639)
T PRK12809 389 FSDLTSEYDAVFIGVGTY 406 (639)
T ss_pred HHHHHhcCCEEEEeCCCC
Confidence 000112578888877753
No 113
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=85.22 E-value=4.6 Score=40.71 Aligned_cols=115 Identities=15% Similarity=-0.030 Sum_probs=65.7
Q ss_pred ceEEEEeechhhHHHHHHHHHhCCCcEEEecCCCChhHHH-HHHCCCeEEeCCCCCCcCCCCCCCCCCEEEEcCCCCCCC
Q 009293 76 GWIHFVGIGGSGLSALAKLALKQGFEVSGSDLVWSSYMEG-LLEAGANLHIGHSVSNIQGNDGSRFPNAVVASSAIPQDN 154 (538)
Q Consensus 76 ~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~~~~~~-~~~~Ga~~~~~~~~~~~~~~~~~~~~d~vvvsp~i~~~~ 154 (538)
+++.|+|-+..---.+|.+|..+|+.|+..+.+-. .+++ ..+..+.+...-.+..+.. ++ -.+..+|+..|+...
T Consensus 160 k~vvViGrS~iVGkPla~lL~~~~atVt~chs~T~-~l~~~~~~ADIvIsAvGk~~~i~~-~~-ik~gavVIDvGin~~- 235 (284)
T PRK14177 160 KNAVVVGRSPILGKPMAMLLTEMNATVTLCHSKTQ-NLPSIVRQADIIVGAVGKPEFIKA-DW-ISEGAVLLDAGYNPG- 235 (284)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCC-CHHHHHhhCCEEEEeCCCcCccCH-HH-cCCCCEEEEecCccc-
Confidence 56889998876666789999999999998875432 2332 2222332222122211111 00 035678888887542
Q ss_pred HHHHHHHHCCCCeeeHHHHHHHHhcCCcEEEEeCCCCchHHHHHHHHHHHHc
Q 009293 155 VEILHAKSVGVPIYKRDYWLAKLTEKYNLIAVSGSHGKSTTASMLAYVLKAM 206 (538)
Q Consensus 155 ~~l~~a~~~gi~vi~~~~~l~~~~~~~~vI~VTGTnGKTTTt~ml~~iL~~~ 206 (538)
+.+..+|-.-......+-=|-|--|.=||+.++.++++.+
T Consensus 236 ------------~~GDVd~~~v~~~a~~iTPVPGGVGp~T~a~L~~N~~~a~ 275 (284)
T PRK14177 236 ------------NVGDIEISKAKDKSSFYTPVPGGVGPMTIAVLLLQTLYSF 275 (284)
T ss_pred ------------ccCCcCHHHHhhhccEecCCCCCChHHHHHHHHHHHHHHH
Confidence 1122221111111122333447799999999999999875
No 114
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=85.00 E-value=1.3 Score=44.08 Aligned_cols=32 Identities=38% Similarity=0.508 Sum_probs=26.0
Q ss_pred cEEEEe--CCCCchHHHHHHHHHHHHcCCCeEEE
Q 009293 182 NLIAVS--GSHGKSTTASMLAYVLKAMGDDLTAI 213 (538)
Q Consensus 182 ~vI~VT--GTnGKTTTt~ml~~iL~~~G~~v~~~ 213 (538)
++|+|. |-.|||||+.-|++.|...|++|..+
T Consensus 2 ~~iav~~KGGvGKTT~~~nLA~~La~~G~kVlli 35 (270)
T cd02040 2 RQIAIYGKGGIGKSTTTQNLSAALAEMGKKVMIV 35 (270)
T ss_pred cEEEEEeCCcCCHHHHHHHHHHHHHhCCCeEEEE
Confidence 345554 78899999999999999999987544
No 115
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=84.94 E-value=3.7 Score=41.88 Aligned_cols=66 Identities=21% Similarity=0.245 Sum_probs=41.9
Q ss_pred ceEEEEeechhhHHHHHHHHHhCCC--cEEEecCCCChhHHHHHHCCCeEEeCCCCCCcCCCCCCCCCCEEEEcC
Q 009293 76 GWIHFVGIGGSGLSALAKLALKQGF--EVSGSDLVWSSYMEGLLEAGANLHIGHSVSNIQGNDGSRFPNAVVASS 148 (538)
Q Consensus 76 ~~v~vlG~G~sG~~~la~~l~~~G~--~v~g~D~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~d~vvvsp 148 (538)
.+|.|||.|..|.+. +..|...|. +|.++|.+.. ..+.+.+.|+............ ..+|+||+..
T Consensus 7 ~~I~IIG~G~mG~sl-a~~l~~~g~~~~V~~~dr~~~-~~~~a~~~g~~~~~~~~~~~~~-----~~aDvViiav 74 (307)
T PRK07502 7 DRVALIGIGLIGSSL-ARAIRRLGLAGEIVGADRSAE-TRARARELGLGDRVTTSAAEAV-----KGADLVILCV 74 (307)
T ss_pred cEEEEEeeCHHHHHH-HHHHHhcCCCcEEEEEECCHH-HHHHHHhCCCCceecCCHHHHh-----cCCCEEEECC
Confidence 468999999999974 677777884 8999986432 3445556675332222211111 2579988864
No 116
>COG2403 Predicted GTPase [General function prediction only]
Probab=84.94 E-value=1.2 Score=46.06 Aligned_cols=35 Identities=26% Similarity=0.380 Sum_probs=31.0
Q ss_pred CCcEEEEeCC---CCchHHHHHHHHHHHHcCCCeEEEe
Q 009293 180 KYNLIAVSGS---HGKSTTASMLAYVLKAMGDDLTAIV 214 (538)
Q Consensus 180 ~~~vI~VTGT---nGKTTTt~ml~~iL~~~G~~v~~~~ 214 (538)
..|+|+|||| -|||+++.+++++|++.|++++...
T Consensus 125 ekPviaV~atrtg~GKsaVS~~v~r~l~ergyrv~vVr 162 (449)
T COG2403 125 EKPVIAVTATRTGVGKSAVSRYVARLLRERGYRVCVVR 162 (449)
T ss_pred cCceEEEEEeccccchhHHHHHHHHHHHHcCCceEEEe
Confidence 3589999998 5999999999999999999987654
No 117
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=84.93 E-value=2.1 Score=50.71 Aligned_cols=76 Identities=17% Similarity=0.131 Sum_probs=50.7
Q ss_pred CceEEEEeechhhHHHHHHHHHhCCCcEEEecCCC----------C------hh----HHHHHHCCCeEEeCCCCC-CcC
Q 009293 75 KGWIHFVGIGGSGLSALAKLALKQGFEVSGSDLVW----------S------SY----MEGLLEAGANLHIGHSVS-NIQ 133 (538)
Q Consensus 75 ~~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~----------~------~~----~~~~~~~Ga~~~~~~~~~-~~~ 133 (538)
.++|+|||.|.+|++| |.+|+.+|++|+..|... + +. .+.+.+.|+.+..+.... .+.
T Consensus 537 ~kkVaIIGGGPAGLSA-A~~LAr~G~~VTV~Ek~~~lGG~l~~~IP~~rlp~e~l~~~ie~l~~~GVe~~~g~~~d~~ve 615 (1012)
T TIGR03315 537 AHKVAVIGAGPAGLSA-GYFLARAGHPVTVFEKKEKPGGVVKNIIPEFRISAESIQKDIELVKFHGVEFKYGCSPDLTVA 615 (1012)
T ss_pred CCcEEEECCCHHHHHH-HHHHHHCCCeEEEEecccccCceeeecccccCCCHHHHHHHHHHHHhcCcEEEEecccceEhh
Confidence 3579999999999997 788899999999998531 0 11 234456798887763211 111
Q ss_pred CCCCCCCCCEEEEcCCCCC
Q 009293 134 GNDGSRFPNAVVASSAIPQ 152 (538)
Q Consensus 134 ~~~~~~~~d~vvvsp~i~~ 152 (538)
. .....+|.||+.+|..+
T Consensus 616 ~-l~~~gYDaVIIATGA~~ 633 (1012)
T TIGR03315 616 E-LKNQGYKYVILAIGAWK 633 (1012)
T ss_pred h-hhcccccEEEECCCCCC
Confidence 0 00124899999998653
No 118
>PLN02712 arogenate dehydrogenase
Probab=84.93 E-value=5.9 Score=45.05 Aligned_cols=109 Identities=17% Similarity=0.104 Sum_probs=62.3
Q ss_pred CCceEEEEeechhhHHHHHHHHHhCCCcEEEecCCCChhHHHHHHCCCeEEeCCCCCCcCCCCCCCCCCEEEEcCCCCCC
Q 009293 74 RKGWIHFVGIGGSGLSALAKLALKQGFEVSGSDLVWSSYMEGLLEAGANLHIGHSVSNIQGNDGSRFPNAVVASSAIPQD 153 (538)
Q Consensus 74 ~~~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~d~vvvsp~i~~~ 153 (538)
+..+|.|||+|..|.+ +|..|...|++|.++|.... .+.+.+.|+... .+..++. ...+|+|++..- +.
T Consensus 368 ~~~kIgIIGlG~mG~s-lA~~L~~~G~~V~~~dr~~~--~~~a~~~Gv~~~--~~~~el~----~~~aDvVILavP--~~ 436 (667)
T PLN02712 368 SKLKIAIVGFGNFGQF-LAKTMVKQGHTVLAYSRSDY--SDEAQKLGVSYF--SDADDLC----EEHPEVILLCTS--IL 436 (667)
T ss_pred CCCEEEEEecCHHHHH-HHHHHHHCcCEEEEEECChH--HHHHHHcCCeEe--CCHHHHH----hcCCCEEEECCC--hH
Confidence 3467999999999996 57777788999999986532 244556787532 1111111 013699998743 21
Q ss_pred CHHHHHHHHCCCCeeeHHHHHHHHhcCCcEEEEeCCCCchHHHHHHHHHHHH
Q 009293 154 NVEILHAKSVGVPIYKRDYWLAKLTEKYNLIAVSGSHGKSTTASMLAYVLKA 205 (538)
Q Consensus 154 ~~~l~~a~~~gi~vi~~~~~l~~~~~~~~vI~VTGTnGKTTTt~ml~~iL~~ 205 (538)
......+ ++ ....-+...|.|-=+.+|+.+...+...+..
T Consensus 437 --~~~~vi~---------~l-~~~~lk~g~ivvDv~SvK~~~~~~~~~~l~~ 476 (667)
T PLN02712 437 --STEKVLK---------SL-PFQRLKRSTLFVDVLSVKEFPRNLFLQHLPQ 476 (667)
T ss_pred --HHHHHHH---------HH-HHhcCCCCcEEEECCCccHHHHHHHHHhccC
Confidence 1111100 11 1101112245555556678888888877754
No 119
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=84.90 E-value=2.7 Score=43.40 Aligned_cols=71 Identities=25% Similarity=0.297 Sum_probs=47.0
Q ss_pred ceEEEEeechhhHHHHHHHHHhCCCcEEEecCCCChhHHHHHHCCCeEEeCCCCCCcCCCCCCCCCCEEEEcCC
Q 009293 76 GWIHFVGIGGSGLSALAKLALKQGFEVSGSDLVWSSYMEGLLEAGANLHIGHSVSNIQGNDGSRFPNAVVASSA 149 (538)
Q Consensus 76 ~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~d~vvvsp~ 149 (538)
.+|+|+|+|+.|..|+ .+++..|++|.+.|.+.+ -.+.+.+.|+..++.....+... ...+.+|+++...+
T Consensus 168 ~~V~I~G~GGlGh~av-Q~Aka~ga~Via~~~~~~-K~e~a~~lGAd~~i~~~~~~~~~-~~~~~~d~ii~tv~ 238 (339)
T COG1064 168 KWVAVVGAGGLGHMAV-QYAKAMGAEVIAITRSEE-KLELAKKLGADHVINSSDSDALE-AVKEIADAIIDTVG 238 (339)
T ss_pred CEEEEECCcHHHHHHH-HHHHHcCCeEEEEeCChH-HHHHHHHhCCcEEEEcCCchhhH-HhHhhCcEEEECCC
Confidence 4699999998887663 555568999999996543 34567788999888633222110 01112788888665
No 120
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=84.61 E-value=7.2 Score=39.27 Aligned_cols=119 Identities=18% Similarity=0.082 Sum_probs=65.9
Q ss_pred ceEEEEeechhhHHHHHHHHHhCCCcEEEecCCCChhHHHH-HHCCCeEEeCCCCCCcCCCCCCCCCCEEEEcCCCCCCC
Q 009293 76 GWIHFVGIGGSGLSALAKLALKQGFEVSGSDLVWSSYMEGL-LEAGANLHIGHSVSNIQGNDGSRFPNAVVASSAIPQDN 154 (538)
Q Consensus 76 ~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~~~~~~~-~~~Ga~~~~~~~~~~~~~~~~~~~~d~vvvsp~i~~~~ 154 (538)
+++.|+|-+..--..+|.+|..+|+.|+...... +.+.+. .+..+.+...-.+..+.. ++ -.+..+|+..|+....
T Consensus 158 k~vvViGrS~~VG~Pla~lL~~~~AtVti~hs~T-~~l~~~~~~ADIvV~AvGkp~~i~~-~~-vk~gavvIDvGin~~~ 234 (281)
T PRK14183 158 KDVCVVGASNIVGKPMAALLLNANATVDICHIFT-KDLKAHTKKADIVIVGVGKPNLITE-DM-VKEGAIVIDIGINRTE 234 (281)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC-cCHHHHHhhCCEEEEecCcccccCH-HH-cCCCcEEEEeeccccC
Confidence 5688999984433457888888999999776432 223332 232333322222222211 01 0356788888876521
Q ss_pred HHHHHHHHCCCCeeeHHHHHHHHhcCCcEEEEeCCCCchHHHHHHHHHHHHc
Q 009293 155 VEILHAKSVGVPIYKRDYWLAKLTEKYNLIAVSGSHGKSTTASMLAYVLKAM 206 (538)
Q Consensus 155 ~~l~~a~~~gi~vi~~~~~l~~~~~~~~vI~VTGTnGKTTTt~ml~~iL~~~ 206 (538)
.| .+....++-.-......+.=|-|--|.=||+.++.++++.+
T Consensus 235 --------~g-kl~GDVd~~~~~~~a~~iTPVPGGVGpvT~a~L~~N~~~a~ 277 (281)
T PRK14183 235 --------DG-RLVGDVDFENVAKKCSYITPVPGGVGPMTIAMLLSNTLKAA 277 (281)
T ss_pred --------CC-CeECCccHHHHHhhceEecCCCCCChHHHHHHHHHHHHHHH
Confidence 01 23333332221112223444558899999999999999875
No 121
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=84.55 E-value=0.81 Score=43.32 Aligned_cols=27 Identities=37% Similarity=0.546 Sum_probs=24.1
Q ss_pred EEEEeC--CCCchHHHHHHHHHHHHcCCC
Q 009293 183 LIAVSG--SHGKSTTASMLAYVLKAMGDD 209 (538)
Q Consensus 183 vI~VTG--TnGKTTTt~ml~~iL~~~G~~ 209 (538)
+|||+| ..||||++..|...|.+.|..
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~ 29 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKRGIP 29 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTCTTT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCccCcC
Confidence 699998 689999999999999988764
No 122
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=84.47 E-value=7.2 Score=39.81 Aligned_cols=34 Identities=29% Similarity=0.235 Sum_probs=28.5
Q ss_pred ceEEEEeechhhHHHHHHHHHhCCCcEEEecCCCC
Q 009293 76 GWIHFVGIGGSGLSALAKLALKQGFEVSGSDLVWS 110 (538)
Q Consensus 76 ~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~ 110 (538)
.+|.|+|.|.-|.+ +|..|...|++|.++|....
T Consensus 5 m~I~iiG~G~~G~~-lA~~l~~~G~~V~~~~r~~~ 38 (308)
T PRK14619 5 KTIAILGAGAWGST-LAGLASANGHRVRVWSRRSG 38 (308)
T ss_pred CEEEEECccHHHHH-HHHHHHHCCCEEEEEeCCCC
Confidence 46999999999986 58888889999999986543
No 123
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=84.43 E-value=6.4 Score=39.67 Aligned_cols=119 Identities=17% Similarity=0.102 Sum_probs=68.0
Q ss_pred ceEEEEeechhhHHHHHHHHHhCCCcEEEecCCCChhHHH-HHHCCCeEEeCCCCCCcCCCCCCCCCCEEEEcCCCCCCC
Q 009293 76 GWIHFVGIGGSGLSALAKLALKQGFEVSGSDLVWSSYMEG-LLEAGANLHIGHSVSNIQGNDGSRFPNAVVASSAIPQDN 154 (538)
Q Consensus 76 ~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~~~~~~-~~~~Ga~~~~~~~~~~~~~~~~~~~~d~vvvsp~i~~~~ 154 (538)
+++.|+|-+..--..+|.+|..+|+.|+..+.+-. .+++ ..+..+.+...-.+..+.. ++ -.+..+|+..|+.+..
T Consensus 158 k~vvVvGrS~iVGkPla~lL~~~~atVt~chs~T~-nl~~~~~~ADIvIsAvGkp~~i~~-~~-vk~GavVIDvGin~~~ 234 (282)
T PRK14166 158 KDAVIIGASNIVGRPMATMLLNAGATVSVCHIKTK-DLSLYTRQADLIIVAAGCVNLLRS-DM-VKEGVIVVDVGINRLE 234 (282)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCC-CHHHHHhhCCEEEEcCCCcCccCH-HH-cCCCCEEEEecccccC
Confidence 67889998876666789999999999998764322 2332 2232333222122221211 00 0357888888886521
Q ss_pred HHHHHHHHCCCCeeeHHHHHHHHhcCCcEEEEeCCCCchHHHHHHHHHHHHc
Q 009293 155 VEILHAKSVGVPIYKRDYWLAKLTEKYNLIAVSGSHGKSTTASMLAYVLKAM 206 (538)
Q Consensus 155 ~~l~~a~~~gi~vi~~~~~l~~~~~~~~vI~VTGTnGKTTTt~ml~~iL~~~ 206 (538)
.| .+....++-.-......+-=|-|--|.-||+.++.++++.+
T Consensus 235 --------~g-kl~GDVd~~~v~~~a~~iTPVPGGVGp~T~a~L~~N~v~a~ 277 (282)
T PRK14166 235 --------SG-KIVGDVDFEEVSKKSSYITPVPGGVGPMTIAMLLENTVKSA 277 (282)
T ss_pred --------CC-CeeCCCCHHHHHhhccEecCCCCCchHHHHHHHHHHHHHHH
Confidence 01 23333332211111222334458899999999999999875
No 124
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=84.31 E-value=1 Score=49.26 Aligned_cols=36 Identities=31% Similarity=0.354 Sum_probs=31.1
Q ss_pred hcCCCceEEEEeechhhHHHHHHHHHhCCCcEEEecC
Q 009293 71 FKNRKGWIHFVGIGGSGLSALAKLALKQGFEVSGSDL 107 (538)
Q Consensus 71 ~~~~~~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~ 107 (538)
...++++|.|||.|.+|++| |+.|...|.+|.+.+.
T Consensus 11 ~~~~~~~VIVIGAGiaGLsA-ArqL~~~G~~V~VLEA 46 (501)
T KOG0029|consen 11 EAGKKKKVIVIGAGLAGLSA-ARQLQDFGFDVLVLEA 46 (501)
T ss_pred cccCCCcEEEECCcHHHHHH-HHHHHHcCCceEEEec
Confidence 45566789999999999998 8999999999998763
No 125
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=84.23 E-value=4.1 Score=41.61 Aligned_cols=32 Identities=25% Similarity=0.173 Sum_probs=27.3
Q ss_pred eEEEEeechhhHHHHHHHHHhCCCcEEEecCCC
Q 009293 77 WIHFVGIGGSGLSALAKLALKQGFEVSGSDLVW 109 (538)
Q Consensus 77 ~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~ 109 (538)
+|.|||.|..|.+ +|..|+.+|++|.++|...
T Consensus 4 ~V~VIG~G~mG~~-iA~~la~~G~~V~v~d~~~ 35 (308)
T PRK06129 4 SVAIIGAGLIGRA-WAIVFARAGHEVRLWDADP 35 (308)
T ss_pred EEEEECccHHHHH-HHHHHHHCCCeeEEEeCCH
Confidence 5899999998886 5778888999999999664
No 126
>PRK15453 phosphoribulokinase; Provisional
Probab=84.23 E-value=1.6 Score=43.95 Aligned_cols=31 Identities=26% Similarity=0.389 Sum_probs=25.4
Q ss_pred cCCcEEEEeCCC--CchHHHHHHHHHHHHcCCC
Q 009293 179 EKYNLIAVSGSH--GKSTTASMLAYVLKAMGDD 209 (538)
Q Consensus 179 ~~~~vI~VTGTn--GKTTTt~ml~~iL~~~G~~ 209 (538)
++.++|+|||+. ||||++..++++|+..+.+
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if~~~~~~ 35 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIFRRENIN 35 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhcCCC
Confidence 356899999975 7999999999999766543
No 127
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=84.02 E-value=1.8 Score=49.12 Aligned_cols=75 Identities=19% Similarity=0.197 Sum_probs=48.1
Q ss_pred CceEEEEeechhhHHHHHHHHHhCCCcEEEecCCCC----------h----------hHHHHHHCCCeEEeCCCC-CCcC
Q 009293 75 KGWIHFVGIGGSGLSALAKLALKQGFEVSGSDLVWS----------S----------YMEGLLEAGANLHIGHSV-SNIQ 133 (538)
Q Consensus 75 ~~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~----------~----------~~~~~~~~Ga~~~~~~~~-~~~~ 133 (538)
.++|+|||.|.+|+++ |..|+..|++|+..|.... . ..+.+.+.|+.+..+... .++.
T Consensus 327 ~~~VaIIGaGpAGLsa-A~~L~~~G~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~i~ 405 (654)
T PRK12769 327 DKRVAIIGAGPAGLAC-ADVLARNGVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFELNCEVGKDIS 405 (654)
T ss_pred CCEEEEECCCHHHHHH-HHHHHHCCCeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEECCCEeCCcCC
Confidence 3579999999999997 7888889999999985321 0 133456678887664321 1110
Q ss_pred CCCCCCCCCEEEEcCCC
Q 009293 134 GNDGSRFPNAVVASSAI 150 (538)
Q Consensus 134 ~~~~~~~~d~vvvsp~i 150 (538)
.......+|.|++..|-
T Consensus 406 ~~~~~~~~DavilAtGa 422 (654)
T PRK12769 406 LESLLEDYDAVFVGVGT 422 (654)
T ss_pred HHHHHhcCCEEEEeCCC
Confidence 00001257888887764
No 128
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=83.86 E-value=1.3 Score=42.55 Aligned_cols=32 Identities=31% Similarity=0.551 Sum_probs=28.4
Q ss_pred cEEEEe---CCCCchHHHHHHHHHHHHcCCCeEEE
Q 009293 182 NLIAVS---GSHGKSTTASMLAYVLKAMGDDLTAI 213 (538)
Q Consensus 182 ~vI~VT---GTnGKTTTt~ml~~iL~~~G~~v~~~ 213 (538)
++|.|| |-.|||||++-|...|...|++++..
T Consensus 3 ~iIVvTSGKGGVGKTTttAnig~aLA~~GkKv~li 37 (272)
T COG2894 3 RIIVVTSGKGGVGKTTTTANIGTALAQLGKKVVLI 37 (272)
T ss_pred eEEEEecCCCCcCccchhHHHHHHHHHcCCeEEEE
Confidence 578888 78899999999999999999997654
No 129
>PLN02256 arogenate dehydrogenase
Probab=83.71 E-value=8.6 Score=39.28 Aligned_cols=65 Identities=26% Similarity=0.272 Sum_probs=42.2
Q ss_pred CceEEEEeechhhHHHHHHHHHhCCCcEEEecCCCChhHHHHHHCCCeEEeCCCCCCcCCCCCCCCCCEEEEcC
Q 009293 75 KGWIHFVGIGGSGLSALAKLALKQGFEVSGSDLVWSSYMEGLLEAGANLHIGHSVSNIQGNDGSRFPNAVVASS 148 (538)
Q Consensus 75 ~~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~d~vvvsp 148 (538)
..+|.|||.|..|.+ +|..|...|.+|.+.|.+.. .+.+.+.|+... .+..... ...+|+|++..
T Consensus 36 ~~kI~IIG~G~mG~s-lA~~L~~~G~~V~~~d~~~~--~~~a~~~gv~~~--~~~~e~~----~~~aDvVilav 100 (304)
T PLN02256 36 KLKIGIVGFGNFGQF-LAKTFVKQGHTVLATSRSDY--SDIAAELGVSFF--RDPDDFC----EEHPDVVLLCT 100 (304)
T ss_pred CCEEEEEeeCHHHHH-HHHHHHhCCCEEEEEECccH--HHHHHHcCCeee--CCHHHHh----hCCCCEEEEec
Confidence 357999999999997 57777788999999986532 233445676542 1111110 01478988864
No 130
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=83.53 E-value=5.4 Score=40.23 Aligned_cols=119 Identities=14% Similarity=0.062 Sum_probs=67.1
Q ss_pred ceEEEEeechhhHHHHHHHHHhCCCcEEEecCCCChhHHHH-HHCCCeEEeCCCCCCcCCCCCCCCCCEEEEcCCCCCCC
Q 009293 76 GWIHFVGIGGSGLSALAKLALKQGFEVSGSDLVWSSYMEGL-LEAGANLHIGHSVSNIQGNDGSRFPNAVVASSAIPQDN 154 (538)
Q Consensus 76 ~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~~~~~~~-~~~Ga~~~~~~~~~~~~~~~~~~~~d~vvvsp~i~~~~ 154 (538)
+++.|+|-+..--..+|.+|..+|+.|+..+.+. ..+.+. .+..+.+...-.+..+.. ++- .+..+|+..|+.+..
T Consensus 159 k~vvViGrS~iVG~Pla~lL~~~~atVt~chs~t-~~l~~~~~~ADIvI~AvG~p~~i~~-~~i-k~gavVIDvGi~~~~ 235 (284)
T PRK14190 159 KHVVVVGRSNIVGKPVGQLLLNENATVTYCHSKT-KNLAELTKQADILIVAVGKPKLITA-DMV-KEGAVVIDVGVNRLE 235 (284)
T ss_pred CEEEEECCCCccHHHHHHHHHHCCCEEEEEeCCc-hhHHHHHHhCCEEEEecCCCCcCCH-HHc-CCCCEEEEeeccccC
Confidence 6688999886666678999999999999876432 223332 233333322222221211 111 356788888877521
Q ss_pred HHHHHHHHCCCCeeeHHHHHHHHhcCCcEEEEeCCCCchHHHHHHHHHHHHc
Q 009293 155 VEILHAKSVGVPIYKRDYWLAKLTEKYNLIAVSGSHGKSTTASMLAYVLKAM 206 (538)
Q Consensus 155 ~~l~~a~~~gi~vi~~~~~l~~~~~~~~vI~VTGTnGKTTTt~ml~~iL~~~ 206 (538)
.| .+....+|-.-......+-=|-|--|.-||+.++.++++.+
T Consensus 236 --------~g-kl~GDvd~e~v~~~a~~iTPVPGGVGpvT~a~L~~N~~~a~ 278 (284)
T PRK14190 236 --------NG-KLCGDVDFDNVKEKASYITPVPGGVGPMTITMLMHNTVELA 278 (284)
T ss_pred --------CC-CeeccCcHHHHhhhceEecCCCCCChHHHHHHHHHHHHHHH
Confidence 01 13333332111111112333448899999999999999875
No 131
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=83.26 E-value=1.8 Score=41.60 Aligned_cols=30 Identities=40% Similarity=0.509 Sum_probs=25.1
Q ss_pred EEEEe--CCCCchHHHHHHHHHHHHcCCCeEE
Q 009293 183 LIAVS--GSHGKSTTASMLAYVLKAMGDDLTA 212 (538)
Q Consensus 183 vI~VT--GTnGKTTTt~ml~~iL~~~G~~v~~ 212 (538)
+|+|+ |=.|||||+..|++.|.+.|++|..
T Consensus 2 ~iav~gKGGvGKTt~~~nLA~~la~~G~rvLl 33 (212)
T cd02117 2 QIAIYGKGGIGKSTTSQNLSAALAEMGKKVLQ 33 (212)
T ss_pred EEEEECCCcCcHHHHHHHHHHHHHHCCCcEEE
Confidence 56666 5678999999999999999998643
No 132
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=83.04 E-value=8.7 Score=38.82 Aligned_cols=33 Identities=24% Similarity=0.328 Sum_probs=26.3
Q ss_pred CceEEEEeechhhHHHHHHHHHhCCC-cEEEecCC
Q 009293 75 KGWIHFVGIGGSGLSALAKLALKQGF-EVSGSDLV 108 (538)
Q Consensus 75 ~~~v~vlG~G~sG~~~la~~l~~~G~-~v~g~D~~ 108 (538)
.++|+|+|.|+.|+++ +..|+..|. ++...|..
T Consensus 127 ~k~vlIlGaGGaarai-a~aL~~~G~~~I~I~nR~ 160 (284)
T PRK12549 127 LERVVQLGAGGAGAAV-AHALLTLGVERLTIFDVD 160 (284)
T ss_pred CCEEEEECCcHHHHHH-HHHHHHcCCCEEEEECCC
Confidence 3579999999999987 555566886 79999865
No 133
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=82.77 E-value=2.6 Score=43.46 Aligned_cols=72 Identities=14% Similarity=0.114 Sum_probs=45.5
Q ss_pred hhhhhhcCCCceEEEEeechhhHHHHHHHHHhCCCcEEEecCCCChhHHHHHHCCCeEEeCCCCCCcCCCCCCCCCCEEE
Q 009293 66 ECIVDFKNRKGWIHFVGIGGSGLSALAKLALKQGFEVSGSDLVWSSYMEGLLEAGANLHIGHSVSNIQGNDGSRFPNAVV 145 (538)
Q Consensus 66 ~~~~~~~~~~~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~d~vv 145 (538)
.....+++ ++|.|||.|.-|.+ +|.-|+..|.+|.+.+.....-.+.+.+.|+... +..+.. +..|+|+
T Consensus 10 ~~~~~L~g--ktIgIIG~GsmG~A-lA~~L~~sG~~Vvv~~r~~~~s~~~A~~~G~~~~---s~~eaa-----~~ADVVv 78 (330)
T PRK05479 10 ADLSLIKG--KKVAIIGYGSQGHA-HALNLRDSGVDVVVGLREGSKSWKKAEADGFEVL---TVAEAA-----KWADVIM 78 (330)
T ss_pred CChhhhCC--CEEEEEeeHHHHHH-HHHHHHHCCCEEEEEECCchhhHHHHHHCCCeeC---CHHHHH-----hcCCEEE
Confidence 44444556 56999999999987 5777788999998776443323344556676542 111111 2578888
Q ss_pred EcC
Q 009293 146 ASS 148 (538)
Q Consensus 146 vsp 148 (538)
+..
T Consensus 79 LaV 81 (330)
T PRK05479 79 ILL 81 (330)
T ss_pred EcC
Confidence 853
No 134
>PTZ00117 malate dehydrogenase; Provisional
Probab=82.68 E-value=15 Score=37.72 Aligned_cols=74 Identities=23% Similarity=0.378 Sum_probs=45.1
Q ss_pred CCceEEEEeechhhHHHHHHHHHhCC-CcEEEecCCCChhHH---HHHH----CCCeEEe-C-CCCCCcCCCCCCCCCCE
Q 009293 74 RKGWIHFVGIGGSGLSALAKLALKQG-FEVSGSDLVWSSYME---GLLE----AGANLHI-G-HSVSNIQGNDGSRFPNA 143 (538)
Q Consensus 74 ~~~~v~vlG~G~sG~~~la~~l~~~G-~~v~g~D~~~~~~~~---~~~~----~Ga~~~~-~-~~~~~~~~~~~~~~~d~ 143 (538)
+..||.|+|.|..|.+ +|..++..| .++...|.+.+.-.. ++.. .+....+ + .+.+.+ +.+|+
T Consensus 4 ~~~KI~IIGaG~vG~~-ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~~l------~~ADi 76 (319)
T PTZ00117 4 KRKKISMIGAGQIGST-VALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYEDI------KDSDV 76 (319)
T ss_pred CCcEEEEECCCHHHHH-HHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHHHh------CCCCE
Confidence 3467999999988987 578888888 688899976431111 1111 1222221 1 222233 36899
Q ss_pred EEEcCCCCCCC
Q 009293 144 VVASSAIPQDN 154 (538)
Q Consensus 144 vvvsp~i~~~~ 154 (538)
||..-+++...
T Consensus 77 VVitag~~~~~ 87 (319)
T PTZ00117 77 VVITAGVQRKE 87 (319)
T ss_pred EEECCCCCCCC
Confidence 99998876543
No 135
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=82.52 E-value=1.9 Score=43.16 Aligned_cols=32 Identities=38% Similarity=0.531 Sum_probs=27.1
Q ss_pred cEEEEe--CCCCchHHHHHHHHHHHHcCCCeEEE
Q 009293 182 NLIAVS--GSHGKSTTASMLAYVLKAMGDDLTAI 213 (538)
Q Consensus 182 ~vI~VT--GTnGKTTTt~ml~~iL~~~G~~v~~~ 213 (538)
++|+|+ |=.|||||+.-|+..|.+.|++|..+
T Consensus 2 ~~iav~gKGGVGKTT~a~nLA~~La~~G~rVllv 35 (273)
T PRK13232 2 RQIAIYGKGGIGKSTTTQNLTAALSTMGNKILLV 35 (273)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHhhCCCeEEE
Confidence 577777 46789999999999999999997544
No 136
>PRK07667 uridine kinase; Provisional
Probab=82.48 E-value=2.7 Score=39.78 Aligned_cols=32 Identities=22% Similarity=0.301 Sum_probs=27.1
Q ss_pred CCcEEEEeC--CCCchHHHHHHHHHHHHcCCCeE
Q 009293 180 KYNLIAVSG--SHGKSTTASMLAYVLKAMGDDLT 211 (538)
Q Consensus 180 ~~~vI~VTG--TnGKTTTt~ml~~iL~~~G~~v~ 211 (538)
+..+|||+| -.||||++..|.+.|+..|.++.
T Consensus 16 ~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~ 49 (193)
T PRK07667 16 NRFILGIDGLSRSGKTTFVANLKENMKQEGIPFH 49 (193)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEE
Confidence 346999999 57899999999999998887643
No 137
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=82.43 E-value=15 Score=38.98 Aligned_cols=109 Identities=18% Similarity=0.178 Sum_probs=61.0
Q ss_pred eEEEEeechhhHHHHHHHHHhCCCcEEEecCCCCh--------------hHHHHH-HCCCeEEeCCCCCCcCCCCCCCCC
Q 009293 77 WIHFVGIGGSGLSALAKLALKQGFEVSGSDLVWSS--------------YMEGLL-EAGANLHIGHSVSNIQGNDGSRFP 141 (538)
Q Consensus 77 ~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~~--------------~~~~~~-~~Ga~~~~~~~~~~~~~~~~~~~~ 141 (538)
+|.|+|+|--|... |.+++ .|++|.|.|.+... .++++. +.+..+....+.... ....
T Consensus 2 kI~VIGlGyvGl~~-A~~lA-~G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~-----~~~a 74 (388)
T PRK15057 2 KITISGTGYVGLSN-GLLIA-QNHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEA-----YRDA 74 (388)
T ss_pred EEEEECCCHHHHHH-HHHHH-hCCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhh-----hcCC
Confidence 48899999999865 56666 49999999965321 111111 122333222111111 0257
Q ss_pred CEEEEcCCCCCC-------CHHHHHHHHCCCCeeeHHHHHHHHhcCCcEEEEeCCCCchHHHHHHHHHH
Q 009293 142 NAVVASSAIPQD-------NVEILHAKSVGVPIYKRDYWLAKLTEKYNLIAVSGSHGKSTTASMLAYVL 203 (538)
Q Consensus 142 d~vvvsp~i~~~-------~~~l~~a~~~gi~vi~~~~~l~~~~~~~~vI~VTGTnGKTTTt~ml~~iL 203 (538)
|+|++...-|.+ ...+..+. +-+.+. ++..+|.+..|--=+||-.+...+.
T Consensus 75 d~vii~Vpt~~~~k~~~~dl~~v~~v~----------~~i~~~-~~g~lVV~~STv~pgtt~~l~~~~~ 132 (388)
T PRK15057 75 DYVIIATPTDYDPKTNYFNTSSVESVI----------KDVVEI-NPYAVMVIKSTVPVGFTAAMHKKYR 132 (388)
T ss_pred CEEEEeCCCCCccCCCCcChHHHHHHH----------HHHHhc-CCCCEEEEeeecCCchHHHHHHHhh
Confidence 888887544321 12333331 112232 4457888888988888888776543
No 138
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=82.43 E-value=10 Score=38.15 Aligned_cols=118 Identities=16% Similarity=0.085 Sum_probs=66.9
Q ss_pred ceEEEEeechhhHHHHHHHHHhCCCcEEEecCCCChhHHHH-HHCCCeEEeCCCCCCcCCCCCCCCCCEEEEcCCCCCCC
Q 009293 76 GWIHFVGIGGSGLSALAKLALKQGFEVSGSDLVWSSYMEGL-LEAGANLHIGHSVSNIQGNDGSRFPNAVVASSAIPQDN 154 (538)
Q Consensus 76 ~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~~~~~~~-~~~Ga~~~~~~~~~~~~~~~~~~~~d~vvvsp~i~~~~ 154 (538)
+++.|+|-+..---.+|.+|..+|+.|+..+.+-. .+.+. .+..+.+...-.+..+.. ++ -.+..+|+..|+.+..
T Consensus 159 k~vvViGrS~~VGkPla~lL~~~~AtVt~chs~T~-~l~~~~~~ADIvIsAvGkp~~i~~-~~-ik~gavVIDvGin~~~ 235 (278)
T PRK14172 159 KEVVVIGRSNIVGKPVAQLLLNENATVTICHSKTK-NLKEVCKKADILVVAIGRPKFIDE-EY-VKEGAIVIDVGTSSVN 235 (278)
T ss_pred CEEEEECCCccchHHHHHHHHHCCCEEEEeCCCCC-CHHHHHhhCCEEEEcCCCcCccCH-HH-cCCCcEEEEeeccccC
Confidence 56889998866555689999999999998874422 23332 333333322222221211 01 1357788888876521
Q ss_pred HHHHHHHHCCCCeeeHHHHHHHHhcCCcEEEEeCCCCchHHHHHHHHHHHHc
Q 009293 155 VEILHAKSVGVPIYKRDYWLAKLTEKYNLIAVSGSHGKSTTASMLAYVLKAM 206 (538)
Q Consensus 155 ~~l~~a~~~gi~vi~~~~~l~~~~~~~~vI~VTGTnGKTTTt~ml~~iL~~~ 206 (538)
| .+....+|-.-......+-=|-|--|.=||+.++.++++..
T Consensus 236 ---------g-kl~GDvd~~~v~~~a~~iTPVPGGVGp~T~a~L~~N~~~a~ 277 (278)
T PRK14172 236 ---------G-KITGDVNFDKVIDKASYITPVPGGVGSLTTTLLIKNVCEAL 277 (278)
T ss_pred ---------C-ceeeeccHHHHHhhccEecCCCCCccHHHHHHHHHHHHHhc
Confidence 1 23333333111111122333448899999999999998753
No 139
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=82.43 E-value=2.5 Score=34.69 Aligned_cols=64 Identities=23% Similarity=0.187 Sum_probs=38.6
Q ss_pred eEEEEeechhhHHHHHHHHHhCC---CcEE-EecCCCChhHHHH-HHCCCeEEeCCCCCCcCCCCCCCCCCEEEEcC
Q 009293 77 WIHFVGIGGSGLSALAKLALKQG---FEVS-GSDLVWSSYMEGL-LEAGANLHIGHSVSNIQGNDGSRFPNAVVASS 148 (538)
Q Consensus 77 ~v~vlG~G~sG~~~la~~l~~~G---~~v~-g~D~~~~~~~~~~-~~~Ga~~~~~~~~~~~~~~~~~~~~d~vvvsp 148 (538)
||.|||.|.-|.+- ++-|...| +++. +++.+++ -..++ .+.++.+...+..+-+. ..|+|+++.
T Consensus 1 kI~iIG~G~mg~al-~~~l~~~g~~~~~v~~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~------~advvilav 69 (96)
T PF03807_consen 1 KIGIIGAGNMGSAL-ARGLLASGIKPHEVIIVSSRSPE-KAAELAKEYGVQATADDNEEAAQ------EADVVILAV 69 (96)
T ss_dssp EEEEESTSHHHHHH-HHHHHHTTS-GGEEEEEEESSHH-HHHHHHHHCTTEEESEEHHHHHH------HTSEEEE-S
T ss_pred CEEEECCCHHHHHH-HHHHHHCCCCceeEEeeccCcHH-HHHHHHHhhccccccCChHHhhc------cCCEEEEEE
Confidence 57899999999975 55556689 8888 5454332 33343 45576654422222221 478888863
No 140
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=82.34 E-value=6.7 Score=42.76 Aligned_cols=33 Identities=21% Similarity=0.265 Sum_probs=26.7
Q ss_pred CceEEEEeechhhHHHHHHHHHhCCCcEEEecCC
Q 009293 75 KGWIHFVGIGGSGLSALAKLALKQGFEVSGSDLV 108 (538)
Q Consensus 75 ~~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~ 108 (538)
.++++|+|.|+.|+++ +..|+..|+++...+..
T Consensus 332 ~k~vlIiGaGgiG~ai-a~~L~~~G~~V~i~~R~ 364 (477)
T PRK09310 332 NQHVAIVGAGGAAKAI-ATTLARAGAELLIFNRT 364 (477)
T ss_pred CCEEEEEcCcHHHHHH-HHHHHHCCCEEEEEeCC
Confidence 3578999999999975 66667789999988754
No 141
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=82.27 E-value=7.1 Score=39.41 Aligned_cols=117 Identities=20% Similarity=0.156 Sum_probs=64.1
Q ss_pred ceEEEEeech-hhHHHHHHHHHhCCCcEEEecCCCChhHHHHHHCCCeEEeC--CCCCCcCCCCCCCCCCEEEEcCCCCC
Q 009293 76 GWIHFVGIGG-SGLSALAKLALKQGFEVSGSDLVWSSYMEGLLEAGANLHIG--HSVSNIQGNDGSRFPNAVVASSAIPQ 152 (538)
Q Consensus 76 ~~v~vlG~G~-sG~~~la~~l~~~G~~v~g~D~~~~~~~~~~~~~Ga~~~~~--~~~~~~~~~~~~~~~d~vvvsp~i~~ 152 (538)
+++.|+|-+. .|+ .+|.+|..+|+.|+..+.+.. .+++.. +.+.+++. -.+..+.. ++. ..+.+|+..|+.+
T Consensus 160 k~vvViGrs~iVG~-Pla~lL~~~~atVtv~hs~T~-~l~~~~-~~ADIvi~avG~p~~v~~-~~v-k~gavVIDvGin~ 234 (285)
T PRK10792 160 LNAVVVGASNIVGR-PMSLELLLAGCTVTVCHRFTK-NLRHHV-RNADLLVVAVGKPGFIPG-EWI-KPGAIVIDVGINR 234 (285)
T ss_pred CEEEEECCCcccHH-HHHHHHHHCCCeEEEEECCCC-CHHHHH-hhCCEEEEcCCCcccccH-HHc-CCCcEEEEccccc
Confidence 6689999998 566 478888899999998764322 233221 23333332 11221211 010 3567888888764
Q ss_pred CCHHHHHHHHCCCCeeeHHHHHHHHhcCCcEEEEeCCCCchHHHHHHHHHHHHc
Q 009293 153 DNVEILHAKSVGVPIYKRDYWLAKLTEKYNLIAVSGSHGKSTTASMLAYVLKAM 206 (538)
Q Consensus 153 ~~~~l~~a~~~gi~vi~~~~~l~~~~~~~~vI~VTGTnGKTTTt~ml~~iL~~~ 206 (538)
... | .+....+|-.-......+--|-|=-|.=|++.++.+.++.+
T Consensus 235 ~~~--------g-k~~GDvd~~~~~~~a~~itPvPGGVGp~T~a~L~~N~~~a~ 279 (285)
T PRK10792 235 LED--------G-KLVGDVEFETAAERASWITPVPGGVGPMTVATLLENTLQAC 279 (285)
T ss_pred ccC--------C-CcCCCcCHHHHHhhccCcCCCCCCChHHHHHHHHHHHHHHH
Confidence 210 0 11222221111111222344445688999999999999875
No 142
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=82.26 E-value=7.2 Score=39.40 Aligned_cols=119 Identities=18% Similarity=0.105 Sum_probs=67.2
Q ss_pred ceEEEEeechhhHHHHHHHHHhCCCcEEEecCCCChhHHH-HHHCCCeEEeCCCCCCcCCCCCCCCCCEEEEcCCCCCCC
Q 009293 76 GWIHFVGIGGSGLSALAKLALKQGFEVSGSDLVWSSYMEG-LLEAGANLHIGHSVSNIQGNDGSRFPNAVVASSAIPQDN 154 (538)
Q Consensus 76 ~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~~~~~~-~~~~Ga~~~~~~~~~~~~~~~~~~~~d~vvvsp~i~~~~ 154 (538)
+++.|+|-+..--..+|.+|..+|+.|+....+-. .+.+ ..+..+.+...-.+..+.. ++ -++..+|+..||.+..
T Consensus 160 K~vvViGrS~iVGkPla~lL~~~~ATVtichs~T~-~L~~~~~~ADIvV~AvGkp~~i~~-~~-vk~GavVIDvGin~~~ 236 (288)
T PRK14171 160 KNVVIIGRSNIVGKPLSALLLKENCSVTICHSKTH-NLSSITSKADIVVAAIGSPLKLTA-EY-FNPESIVIDVGINRIS 236 (288)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCC-CHHHHHhhCCEEEEccCCCCccCH-HH-cCCCCEEEEeeccccC
Confidence 56889998866556689999999999997654322 2332 2232333222112221211 01 0356788888876521
Q ss_pred HHHHHHHHCCCCeeeHHHHHHHHhcCCcEEEEeCCCCchHHHHHHHHHHHHc
Q 009293 155 VEILHAKSVGVPIYKRDYWLAKLTEKYNLIAVSGSHGKSTTASMLAYVLKAM 206 (538)
Q Consensus 155 ~~l~~a~~~gi~vi~~~~~l~~~~~~~~vI~VTGTnGKTTTt~ml~~iL~~~ 206 (538)
+-.+....+|-.-......+-=|-|--|-=||+.++.++++.+
T Consensus 237 ---------~gkl~GDVd~~~v~~~a~~iTPVPGGVGp~T~a~L~~N~v~a~ 279 (288)
T PRK14171 237 ---------GNKIIGDVDFENVKSKVKYITPVPGGIGPMTIAFLLKNTVKAF 279 (288)
T ss_pred ---------CCCeECCccHHHHHhhceEeCCCCCCcHHHHHHHHHHHHHHHH
Confidence 1123343332211111112233458999999999999999875
No 143
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=82.19 E-value=8.2 Score=38.88 Aligned_cols=118 Identities=17% Similarity=0.114 Sum_probs=66.6
Q ss_pred ceEEEEeechhhHHHHHHHHHhCCCcEEEecCCCChhHHH-HHHCCCeEEeCCCCCCcCCCCCCCCCCEEEEcCCCCCCC
Q 009293 76 GWIHFVGIGGSGLSALAKLALKQGFEVSGSDLVWSSYMEG-LLEAGANLHIGHSVSNIQGNDGSRFPNAVVASSAIPQDN 154 (538)
Q Consensus 76 ~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~~~~~~-~~~~Ga~~~~~~~~~~~~~~~~~~~~d~vvvsp~i~~~~ 154 (538)
++|.|+|-+..---.+|.+|..+|+.|+..+.... .+.+ ..+..+.+...-.+..+.. ++ -..+.+|+..|+....
T Consensus 159 k~vvViGrS~~VGkPla~lL~~~~ATVt~chs~T~-dl~~~~k~ADIvIsAvGkp~~i~~-~~-vk~gavVIDvGin~~~ 235 (282)
T PRK14180 159 AYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFTT-DLKSHTTKADILIVAVGKPNFITA-DM-VKEGAVVIDVGINHVD 235 (282)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEEcCCCC-CHHHHhhhcCEEEEccCCcCcCCH-HH-cCCCcEEEEecccccC
Confidence 56889998866556689999999999998864322 2332 2222332222222222211 01 1356788888876521
Q ss_pred HHHHHHHHCCCCeeeHHHHHHHHhcCCcEEEEeCCCCchHHHHHHHHHHHHc
Q 009293 155 VEILHAKSVGVPIYKRDYWLAKLTEKYNLIAVSGSHGKSTTASMLAYVLKAM 206 (538)
Q Consensus 155 ~~l~~a~~~gi~vi~~~~~l~~~~~~~~vI~VTGTnGKTTTt~ml~~iL~~~ 206 (538)
| .+....++-.-......+-=|-|--|.=||+.++.++++++
T Consensus 236 ---------g-kl~GDvd~~~v~~~a~~iTPVPGGVGp~T~a~L~~Nl~~a~ 277 (282)
T PRK14180 236 ---------G-KIVGDVDFAAVKDKVAAITPVPGGVGPMTITELLYNTFQCA 277 (282)
T ss_pred ---------C-ceeCCcCHHHHHhhccEeccCCCChhHHHHHHHHHHHHHHH
Confidence 0 13333332211111112333448899999999999999875
No 144
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=82.11 E-value=2.1 Score=39.44 Aligned_cols=33 Identities=27% Similarity=0.424 Sum_probs=29.0
Q ss_pred CcEEEEeCC--CCchHHHHHHHHHHHHcCCCeEEE
Q 009293 181 YNLIAVSGS--HGKSTTASMLAYVLKAMGDDLTAI 213 (538)
Q Consensus 181 ~~vI~VTGT--nGKTTTt~ml~~iL~~~G~~v~~~ 213 (538)
.++++|+|. .||||...=+-..|++.|++++..
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~G~rVa~i 36 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKLKARGYRVATV 36 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHHHhCCcEEEEE
Confidence 579999996 589999999999999999997654
No 145
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=81.81 E-value=9 Score=38.94 Aligned_cols=125 Identities=19% Similarity=0.114 Sum_probs=68.0
Q ss_pred ceEEEEe-echhhHHHHHHHHHhCCCcEEEecCCCChhHHHHH-HCCCeEEeCCCCCCcCCCCCCCCCCEEEEcCCCCCC
Q 009293 76 GWIHFVG-IGGSGLSALAKLALKQGFEVSGSDLVWSSYMEGLL-EAGANLHIGHSVSNIQGNDGSRFPNAVVASSAIPQD 153 (538)
Q Consensus 76 ~~v~vlG-~G~sG~~~la~~l~~~G~~v~g~D~~~~~~~~~~~-~~Ga~~~~~~~~~~~~~~~~~~~~d~vvvsp~i~~~ 153 (538)
++|.|+| .+.-|+. +|.+|..+|+.|+.++.+... ++++. +..+.+...-.+..+.. .+ -.+..+|+..|+...
T Consensus 159 k~V~viGrs~~mG~P-mA~~L~~~g~tVtv~~~rT~~-l~e~~~~ADIVIsavg~~~~v~~-~~-lk~GavVIDvGin~~ 234 (296)
T PRK14188 159 LNAVVIGRSNLVGKP-MAQLLLAANATVTIAHSRTRD-LPAVCRRADILVAAVGRPEMVKG-DW-IKPGATVIDVGINRI 234 (296)
T ss_pred CEEEEEcCCcchHHH-HHHHHHhCCCEEEEECCCCCC-HHHHHhcCCEEEEecCChhhcch-he-ecCCCEEEEcCCccc
Confidence 6799999 7777775 688888899999999633222 33332 32333322222222221 01 135678888887542
Q ss_pred CHHHHHHHHCCC-CeeeHHHHHHHHhcCCcEEEEeCCCCchHHHHHHHHHHHHcC
Q 009293 154 NVEILHAKSVGV-PIYKRDYWLAKLTEKYNLIAVSGSHGKSTTASMLAYVLKAMG 207 (538)
Q Consensus 154 ~~~l~~a~~~gi-~vi~~~~~l~~~~~~~~vI~VTGTnGKTTTt~ml~~iL~~~G 207 (538)
... -...|. .+....+|-.-......+-=|-|=-|.=|++.++.++++.+.
T Consensus 235 ~~~---~~~~g~~~l~GDvd~~~v~~~a~~iTPVPGGVGp~T~a~L~~N~~~a~~ 286 (296)
T PRK14188 235 PAP---EKGEGKTRLVGDVAFAEAAEVAGAITPVPGGVGPMTIACLLANTLTAAC 286 (296)
T ss_pred CCc---cccCCCceeeCCCCHHHHHhhccEecCCCCChhHHHHHHHHHHHHHHHH
Confidence 100 000121 244444432111112223334477999999999999998763
No 146
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=81.78 E-value=1.4 Score=51.64 Aligned_cols=32 Identities=28% Similarity=0.381 Sum_probs=28.7
Q ss_pred CceEEEEeechhhHHHHHHHHHhCCCcEEEecC
Q 009293 75 KGWIHFVGIGGSGLSALAKLALKQGFEVSGSDL 107 (538)
Q Consensus 75 ~~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~ 107 (538)
.++|+|||.|.+|++| |.+|+.+|++|++.|.
T Consensus 383 gKKVaVVGaGPAGLsA-A~~La~~Gh~Vtv~E~ 414 (1028)
T PRK06567 383 NYNILVTGLGPAGFSL-SYYLLRSGHNVTAIDG 414 (1028)
T ss_pred CCeEEEECcCHHHHHH-HHHHHhCCCeEEEEcc
Confidence 4679999999999997 7888889999999994
No 147
>PHA02518 ParA-like protein; Provisional
Probab=81.19 E-value=2.3 Score=40.31 Aligned_cols=31 Identities=42% Similarity=0.517 Sum_probs=25.4
Q ss_pred EEEEe---CCCCchHHHHHHHHHHHHcCCCeEEE
Q 009293 183 LIAVS---GSHGKSTTASMLAYVLKAMGDDLTAI 213 (538)
Q Consensus 183 vI~VT---GTnGKTTTt~ml~~iL~~~G~~v~~~ 213 (538)
+|+|+ |-.||||++..++..|...|++|..+
T Consensus 2 ii~v~~~KGGvGKTT~a~~la~~la~~g~~vlli 35 (211)
T PHA02518 2 IIAVLNQKGGAGKTTVATNLASWLHADGHKVLLV 35 (211)
T ss_pred EEEEEcCCCCCCHHHHHHHHHHHHHhCCCeEEEE
Confidence 55665 66789999999999999999987543
No 148
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=81.08 E-value=2.1 Score=45.68 Aligned_cols=34 Identities=38% Similarity=0.519 Sum_probs=29.8
Q ss_pred CCcEEEEe---CCCCchHHHHHHHHHHHHcCCCeEEE
Q 009293 180 KYNLIAVS---GSHGKSTTASMLAYVLKAMGDDLTAI 213 (538)
Q Consensus 180 ~~~vI~VT---GTnGKTTTt~ml~~iL~~~G~~v~~~ 213 (538)
+.++|+|+ |=.|||||+.-|++.|...|++|..+
T Consensus 120 ~~~vIav~n~KGGvGKTTta~nLA~~LA~~G~rVLlI 156 (405)
T PRK13869 120 HLQVIAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAV 156 (405)
T ss_pred CceEEEEEcCCCCCCHHHHHHHHHHHHHhcCCceEEE
Confidence 45899999 78889999999999999999997543
No 149
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=80.98 E-value=11 Score=38.18 Aligned_cols=123 Identities=12% Similarity=-0.041 Sum_probs=69.3
Q ss_pred ceEEEEeechhhHHHHHHHHHhCCCcEEEecCCCChhHHH-HHHCCCeEEeCCCCCCcCCCCCCCCCCEEEEcCCCCCCC
Q 009293 76 GWIHFVGIGGSGLSALAKLALKQGFEVSGSDLVWSSYMEG-LLEAGANLHIGHSVSNIQGNDGSRFPNAVVASSAIPQDN 154 (538)
Q Consensus 76 ~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~~~~~~-~~~~Ga~~~~~~~~~~~~~~~~~~~~d~vvvsp~i~~~~ 154 (538)
+++.|+|-+..--..+|.+|..+|+.|+..+.+-. .+.+ ..+..+.+...-.+..+.. ++ -....+|+..|+.+..
T Consensus 161 k~vvViGrS~iVGkPla~lL~~~~aTVt~chs~T~-~l~~~~~~ADIvVsAvGkp~~i~~-~~-ik~gaiVIDVGin~~~ 237 (294)
T PRK14187 161 SDAVVIGRSNIVGKPMACLLLGENCTVTTVHSATR-DLADYCSKADILVAAVGIPNFVKY-SW-IKKGAIVIDVGINSIE 237 (294)
T ss_pred CEEEEECCCccchHHHHHHHhhCCCEEEEeCCCCC-CHHHHHhhCCEEEEccCCcCccCH-HH-cCCCCEEEEecccccC
Confidence 56889998866666789999999999998875422 2332 2233333322222221211 01 0356788888876521
Q ss_pred HHHHHHHHCCCCeeeHHHHHHHHhcCCcEEEEeCCCCchHHHHHHHHHHHHcC
Q 009293 155 VEILHAKSVGVPIYKRDYWLAKLTEKYNLIAVSGSHGKSTTASMLAYVLKAMG 207 (538)
Q Consensus 155 ~~l~~a~~~gi~vi~~~~~l~~~~~~~~vI~VTGTnGKTTTt~ml~~iL~~~G 207 (538)
.. ....+.+..+|-.-......+-=|-|=-|.=||+.++.++++++.
T Consensus 238 ~~------~~~kl~GDvd~e~v~~~a~~iTPVPGGVGp~T~a~L~~N~~~a~~ 284 (294)
T PRK14187 238 EG------GVKKFVGDVDFAEVKKKASAITPVPGGVGPMTIAFLMVNTVIAAC 284 (294)
T ss_pred CC------CccceeCCccHHHHhhhccEecCCCCCChHHHHHHHHHHHHHHHH
Confidence 00 001234443432111112223334478999999999999998763
No 150
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=80.74 E-value=7.1 Score=40.38 Aligned_cols=124 Identities=16% Similarity=0.096 Sum_probs=68.8
Q ss_pred ceEEEEeechhhHHHHHHHHHhCCCcEEEecCCCChhHHHH-HHCCCeEEeCCCCCCcCCCCCCCCCCEEEEcCCCCCC-
Q 009293 76 GWIHFVGIGGSGLSALAKLALKQGFEVSGSDLVWSSYMEGL-LEAGANLHIGHSVSNIQGNDGSRFPNAVVASSAIPQD- 153 (538)
Q Consensus 76 ~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~~~~~~~-~~~Ga~~~~~~~~~~~~~~~~~~~~d~vvvsp~i~~~- 153 (538)
+++.|||-+..-.-.+|.+|..+|+.|+....+..+ +.+. .+..+.+...-.+..+.. ++ -++..+|+..||.+.
T Consensus 215 K~vvVIGRS~iVGkPla~LL~~~~ATVTicHs~T~n-l~~~~~~ADIvIsAvGkp~~v~~-d~-vk~GavVIDVGin~~~ 291 (345)
T PLN02897 215 KNAVVIGRSNIVGLPMSLLLQRHDATVSTVHAFTKD-PEQITRKADIVIAAAGIPNLVRG-SW-LKPGAVVIDVGTTPVE 291 (345)
T ss_pred CEEEEECCCccccHHHHHHHHHCCCEEEEEcCCCCC-HHHHHhhCCEEEEccCCcCccCH-HH-cCCCCEEEEccccccc
Confidence 568899888655556789999999999987643222 2322 222333222122211211 01 035678999988652
Q ss_pred CHHHHHHHHCCCCeeeHHHHHHHHhcCCcEEEEeCCCCchHHHHHHHHHHHHc
Q 009293 154 NVEILHAKSVGVPIYKRDYWLAKLTEKYNLIAVSGSHGKSTTASMLAYVLKAM 206 (538)
Q Consensus 154 ~~~l~~a~~~gi~vi~~~~~l~~~~~~~~vI~VTGTnGKTTTt~ml~~iL~~~ 206 (538)
.+ ..+.|..+....+|-.-......+-=|-|--|.-||+.++.++++++
T Consensus 292 ~~----~~~~g~klvGDVdfe~v~~~as~iTPVPGGVGpmTvamLm~N~~~a~ 340 (345)
T PLN02897 292 DS----SCEFGYRLVGDVCYEEALGVASAITPVPGGVGPMTITMLLCNTLDAA 340 (345)
T ss_pred cc----cccCCCeeEecccHHHHHhhccccCCCCCchhHHHHHHHHHHHHHHH
Confidence 11 01112234454343221111222333458899999999999999875
No 151
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=80.66 E-value=5.7 Score=44.85 Aligned_cols=73 Identities=16% Similarity=0.267 Sum_probs=50.9
Q ss_pred CceEEEEeechhhHHHHHHHHHhCCCcEEEecCCCChhHHHHHHCCCeEEeCCCCC-CcCCCCCCCCCCEEEEcCC
Q 009293 75 KGWIHFVGIGGSGLSALAKLALKQGFEVSGSDLVWSSYMEGLLEAGANLHIGHSVS-NIQGNDGSRFPNAVVASSA 149 (538)
Q Consensus 75 ~~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~~~~~~~~~~Ga~~~~~~~~~-~~~~~~~~~~~d~vvvsp~ 149 (538)
+++|.|+|.|+.|+. +++.|..+|.++...|.++ +.++.+.+.|..++.|+..+ +.....+-+.++.+|+...
T Consensus 400 ~~~vII~G~Gr~G~~-va~~L~~~g~~vvvID~d~-~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~~~ 473 (621)
T PRK03562 400 QPRVIIAGFGRFGQI-VGRLLLSSGVKMTVLDHDP-DHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAID 473 (621)
T ss_pred cCcEEEEecChHHHH-HHHHHHhCCCCEEEEECCH-HHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEEeC
Confidence 467889999999997 5888899999999998543 34667778899988874321 1110012235788887654
No 152
>PRK08507 prephenate dehydrogenase; Validated
Probab=80.64 E-value=10 Score=37.85 Aligned_cols=63 Identities=24% Similarity=0.212 Sum_probs=40.4
Q ss_pred eEEEEeechhhHHHHHHHHHhCCC--cEEEecCCCChhHHHHHHCCCeEEeCCCCCCcCCCCCCCCCCEEEEcC
Q 009293 77 WIHFVGIGGSGLSALAKLALKQGF--EVSGSDLVWSSYMEGLLEAGANLHIGHSVSNIQGNDGSRFPNAVVASS 148 (538)
Q Consensus 77 ~v~vlG~G~sG~~~la~~l~~~G~--~v~g~D~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~d~vvvsp 148 (538)
+|.|||.|.-|.+ +|..|...|+ +|.++|.+. +..+.+.+.|+.-... ...... .+|+||+..
T Consensus 2 ~I~iIG~G~mG~s-la~~l~~~g~~~~v~~~d~~~-~~~~~~~~~g~~~~~~-~~~~~~------~aD~Vilav 66 (275)
T PRK08507 2 KIGIIGLGLMGGS-LGLALKEKGLISKVYGYDHNE-LHLKKALELGLVDEIV-SFEELK------KCDVIFLAI 66 (275)
T ss_pred EEEEEccCHHHHH-HHHHHHhcCCCCEEEEEcCCH-HHHHHHHHCCCCcccC-CHHHHh------cCCEEEEeC
Confidence 4889999999987 5777777885 788888543 2345566677631111 111121 379988864
No 153
>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.
Probab=80.61 E-value=3 Score=42.38 Aligned_cols=33 Identities=30% Similarity=0.258 Sum_probs=27.2
Q ss_pred CCcEEEEeCC---CCchHHHHHHHHHHHHcCCCeEE
Q 009293 180 KYNLIAVSGS---HGKSTTASMLAYVLKAMGDDLTA 212 (538)
Q Consensus 180 ~~~vI~VTGT---nGKTTTt~ml~~iL~~~G~~v~~ 212 (538)
+.++|++-|| -||=||+..|...|++.|+++..
T Consensus 111 ~~~rv~~vGTDcavGK~tTal~L~~~l~~~G~~a~f 146 (301)
T PF07755_consen 111 KAKRVLTVGTDCAVGKMTTALELRRALRERGINAGF 146 (301)
T ss_dssp SSEEEEEEESSSSSSHHHHHHHHHHHHHHTT--EEE
T ss_pred CCCEEEEEccCccccHHHHHHHHHHHHHHcCCCceE
Confidence 5689999997 59999999999999999999643
No 154
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=80.39 E-value=11 Score=37.85 Aligned_cols=33 Identities=21% Similarity=0.246 Sum_probs=26.8
Q ss_pred CceEEEEeechhhHHHHHHHHHhCC-CcEEEecCC
Q 009293 75 KGWIHFVGIGGSGLSALAKLALKQG-FEVSGSDLV 108 (538)
Q Consensus 75 ~~~v~vlG~G~sG~~~la~~l~~~G-~~v~g~D~~ 108 (538)
.++++|+|.|+.|+++ +..|+..| .+|.+.+.+
T Consensus 123 ~k~vlVlGaGg~a~ai-~~aL~~~g~~~V~v~~R~ 156 (278)
T PRK00258 123 GKRILILGAGGAARAV-ILPLLDLGVAEITIVNRT 156 (278)
T ss_pred CCEEEEEcCcHHHHHH-HHHHHHcCCCEEEEEeCC
Confidence 3579999999999986 55666789 789999865
No 155
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=80.38 E-value=13 Score=37.75 Aligned_cols=112 Identities=16% Similarity=0.170 Sum_probs=64.0
Q ss_pred eEEEEeechhhHHHHHHHHHhCCCcEEEecCCCChhHHHHHHCCCeEEeCCCCCCcCCCCCCCCCCEEEEcCCCCCCCHH
Q 009293 77 WIHFVGIGGSGLSALAKLALKQGFEVSGSDLVWSSYMEGLLEAGANLHIGHSVSNIQGNDGSRFPNAVVASSAIPQDNVE 156 (538)
Q Consensus 77 ~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~d~vvvsp~i~~~~~~ 156 (538)
+|.|||+|.-|.+ +|.-|...|++|.++|.... .+.+.+.|+.... ...+.. ..+|+|++... +.+.
T Consensus 2 ~Ig~IGlG~MG~~-ma~~L~~~G~~v~v~~~~~~--~~~~~~~g~~~~~--s~~~~~-----~~advVi~~v~---~~~~ 68 (292)
T PRK15059 2 KLGFIGLGIMGTP-MAINLARAGHQLHVTTIGPV--ADELLSLGAVSVE--TARQVT-----EASDIIFIMVP---DTPQ 68 (292)
T ss_pred eEEEEccCHHHHH-HHHHHHHCCCeEEEEeCCHh--HHHHHHcCCeecC--CHHHHH-----hcCCEEEEeCC---ChHH
Confidence 4899999999976 56777789999999986532 3456667775432 221111 25788888642 3333
Q ss_pred HHHHHHCCCCeeeHHHHHHHHhcCCcEEEEeCCCCchHHHHHHHHHHHHcCCC
Q 009293 157 ILHAKSVGVPIYKRDYWLAKLTEKYNLIAVSGSHGKSTTASMLAYVLKAMGDD 209 (538)
Q Consensus 157 l~~a~~~gi~vi~~~~~l~~~~~~~~vI~VTGTnGKTTTt~ml~~iL~~~G~~ 209 (538)
+..... + ...++.. ..+.++|.-++|. ...++.-+++.+++.|..
T Consensus 69 v~~v~~-~-----~~g~~~~-~~~g~ivvd~sT~-~p~~~~~~~~~~~~~G~~ 113 (292)
T PRK15059 69 VEEVLF-G-----ENGCTKA-SLKGKTIVDMSSI-SPIETKRFARQVNELGGD 113 (292)
T ss_pred HHHHHc-C-----Ccchhcc-CCCCCEEEECCCC-CHHHHHHHHHHHHHcCCC
Confidence 332210 0 0011111 1233566666555 555666667777787764
No 156
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=80.23 E-value=10 Score=38.16 Aligned_cols=110 Identities=25% Similarity=0.252 Sum_probs=61.4
Q ss_pred EEeechhhHHHHHHHHHhCCCcEEEecCCCChhHHHHHHCCCeEEeCCCCCCcCCCCCCCCCCEEEEcCCCCCCCHHHHH
Q 009293 80 FVGIGGSGLSALAKLALKQGFEVSGSDLVWSSYMEGLLEAGANLHIGHSVSNIQGNDGSRFPNAVVASSAIPQDNVEILH 159 (538)
Q Consensus 80 vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~d~vvvsp~i~~~~~~l~~ 159 (538)
|||.|.-|.+ +|.-|...|++|.++|.+.. -.+.+.+.|+...- ...... +..|+|++... + ...+..
T Consensus 1 ~IGlG~mG~~-mA~~L~~~G~~V~v~dr~~~-~~~~l~~~g~~~~~--s~~~~~-----~~advVil~vp--~-~~~~~~ 68 (288)
T TIGR01692 1 FIGLGNMGGP-MAANLLKAGHPVRVFDLFPD-AVEEAVAAGAQAAA--SPAEAA-----EGADRVITMLP--A-GQHVIS 68 (288)
T ss_pred CCcccHhHHH-HHHHHHhCCCeEEEEeCCHH-HHHHHHHcCCeecC--CHHHHH-----hcCCEEEEeCC--C-hHHHHH
Confidence 5799999986 56777789999999986432 35566677775421 221111 24788887642 2 122222
Q ss_pred HHHCCCCeeeHHHHHHHHhcCCcEEEEeCCCCchHHHHHHHHHHHHcCCC
Q 009293 160 AKSVGVPIYKRDYWLAKLTEKYNLIAVSGSHGKSTTASMLAYVLKAMGDD 209 (538)
Q Consensus 160 a~~~gi~vi~~~~~l~~~~~~~~vI~VTGTnGKTTTt~ml~~iL~~~G~~ 209 (538)
... +. ..+.... ...++|..+. .-+-.++.-+++.+++.|..
T Consensus 69 v~~-g~-----~~l~~~~-~~g~~vid~s-t~~p~~~~~~~~~~~~~g~~ 110 (288)
T TIGR01692 69 VYS-GD-----EGILPKV-AKGSLLIDCS-TIDPDSARKLAELAAAHGAV 110 (288)
T ss_pred HHc-Cc-----chHhhcC-CCCCEEEECC-CCCHHHHHHHHHHHHHcCCc
Confidence 110 00 0111111 2223444444 55566777788888888764
No 157
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=80.07 E-value=1.7 Score=37.17 Aligned_cols=88 Identities=17% Similarity=0.122 Sum_probs=51.4
Q ss_pred eEEEEeechhhHHHHHHHHHh-CCCcEEE-ecCCCChhHHH-HHHCCCeEEeCCCCCCcCCCCCCCCCCEEEEcCCCCCC
Q 009293 77 WIHFVGIGGSGLSALAKLALK-QGFEVSG-SDLVWSSYMEG-LLEAGANLHIGHSVSNIQGNDGSRFPNAVVASSAIPQD 153 (538)
Q Consensus 77 ~v~vlG~G~sG~~~la~~l~~-~G~~v~g-~D~~~~~~~~~-~~~~Ga~~~~~~~~~~~~~~~~~~~~d~vvvsp~i~~~ 153 (538)
+|.|||.|..|..-+..++.. .+.++.+ .|.+.. .... ..+.|...+-. ..+-+.. ..+|+|+++..-...
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~-~~~~~~~~~~~~~~~~-~~~ll~~----~~~D~V~I~tp~~~h 75 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPE-RAEAFAEKYGIPVYTD-LEELLAD----EDVDAVIIATPPSSH 75 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHH-HHHHHHHHTTSEEESS-HHHHHHH----TTESEEEEESSGGGH
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHH-HHHHHHHHhcccchhH-HHHHHHh----hcCCEEEEecCCcch
Confidence 588999999998876666665 5677664 454322 2233 44568884332 1111110 147888886533222
Q ss_pred CHHHHHHHHCCCCeeeH
Q 009293 154 NVEILHAKSVGVPIYKR 170 (538)
Q Consensus 154 ~~~l~~a~~~gi~vi~~ 170 (538)
.+....+.+.|++|+.+
T Consensus 76 ~~~~~~~l~~g~~v~~E 92 (120)
T PF01408_consen 76 AEIAKKALEAGKHVLVE 92 (120)
T ss_dssp HHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHcCCEEEEE
Confidence 34555667788888765
No 158
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=79.92 E-value=3.4 Score=39.24 Aligned_cols=32 Identities=22% Similarity=0.342 Sum_probs=27.4
Q ss_pred CCcEEEEeCC---CCchHHHHHHHHHHHHcCCCeE
Q 009293 180 KYNLIAVSGS---HGKSTTASMLAYVLKAMGDDLT 211 (538)
Q Consensus 180 ~~~vI~VTGT---nGKTTTt~ml~~iL~~~G~~v~ 211 (538)
..++|+||++ .||||++..++..|...|++|.
T Consensus 16 ~~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVl 50 (204)
T TIGR01007 16 EIKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTL 50 (204)
T ss_pred CCcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEE
Confidence 4789999954 4799999999999999998864
No 159
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=79.87 E-value=2.6 Score=44.61 Aligned_cols=34 Identities=26% Similarity=0.213 Sum_probs=29.8
Q ss_pred CCcEEEEe---CCCCchHHHHHHHHHHHHcCCCeEEE
Q 009293 180 KYNLIAVS---GSHGKSTTASMLAYVLKAMGDDLTAI 213 (538)
Q Consensus 180 ~~~vI~VT---GTnGKTTTt~ml~~iL~~~G~~v~~~ 213 (538)
+.++|+|+ |=.|||||+.-+++.|...|++|..+
T Consensus 105 ~~~vIav~n~KGGVGKTTta~nLA~~LA~~G~rVLlI 141 (387)
T PHA02519 105 NPVVLAVMSHKGGVYKTSSAVHTAQWLALQGHRVLLI 141 (387)
T ss_pred CceEEEEecCCCCCcHHHHHHHHHHHHHhCCCcEEEE
Confidence 46799999 88889999999999999999997544
No 160
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=79.77 E-value=11 Score=43.51 Aligned_cols=108 Identities=19% Similarity=0.114 Sum_probs=59.0
Q ss_pred ceEEEEeechhhHHHHHHHHHhCC--CcEEEecCCCChhHHHHHHCCCeEEeCCCCCCcCCCCCCCCCCEEEEcCCCCCC
Q 009293 76 GWIHFVGIGGSGLSALAKLALKQG--FEVSGSDLVWSSYMEGLLEAGANLHIGHSVSNIQGNDGSRFPNAVVASSAIPQD 153 (538)
Q Consensus 76 ~~v~vlG~G~sG~~~la~~l~~~G--~~v~g~D~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~d~vvvsp~i~~~ 153 (538)
++|.|||.|..|.+. +..|...| .+|.++|.+.. ..+.+.+.|+......+.... ...+|+|++... +.
T Consensus 4 ~~I~IIG~G~mG~al-a~~l~~~G~~~~V~~~d~~~~-~~~~a~~~g~~~~~~~~~~~~-----~~~aDvVilavp--~~ 74 (735)
T PRK14806 4 GRVVVIGLGLIGGSF-AKALRERGLAREVVAVDRRAK-SLELAVSLGVIDRGEEDLAEA-----VSGADVIVLAVP--VL 74 (735)
T ss_pred cEEEEEeeCHHHHHH-HHHHHhcCCCCEEEEEECChh-HHHHHHHCCCCCcccCCHHHH-----hcCCCEEEECCC--HH
Confidence 569999999999974 66677788 57999986543 245566667531111111111 125789888643 21
Q ss_pred CHHHHHHHHCCCCeeeHHHHHHHHhcCCcEEEEeCCCCchHHHHHHHHHHHH
Q 009293 154 NVEILHAKSVGVPIYKRDYWLAKLTEKYNLIAVSGSHGKSTTASMLAYVLKA 205 (538)
Q Consensus 154 ~~~l~~a~~~gi~vi~~~~~l~~~~~~~~vI~VTGTnGKTTTt~ml~~iL~~ 205 (538)
.+.... +-+....++..+|.+.+| -|+.+...+.+.+..
T Consensus 75 --~~~~vl----------~~l~~~~~~~~ii~d~~s-vk~~~~~~l~~~~~~ 113 (735)
T PRK14806 75 --AMEKVL----------ADLKPLLSEHAIVTDVGS-TKGNVVDAARAVFGE 113 (735)
T ss_pred --HHHHHH----------HHHHHhcCCCcEEEEcCC-CchHHHHHHHHhccc
Confidence 111111 111111122234544443 467777777777754
No 161
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=79.73 E-value=2.8 Score=40.89 Aligned_cols=32 Identities=41% Similarity=0.594 Sum_probs=26.9
Q ss_pred cEEEEe---CCCCchHHHHHHHHHHHHcCCCeEEE
Q 009293 182 NLIAVS---GSHGKSTTASMLAYVLKAMGDDLTAI 213 (538)
Q Consensus 182 ~vI~VT---GTnGKTTTt~ml~~iL~~~G~~v~~~ 213 (538)
++|+|+ |-.||||++.-++..|...|++|..+
T Consensus 2 ~iI~v~s~KGGvGKTt~a~nla~~la~~g~~Vlli 36 (246)
T TIGR03371 2 KVIAIVGVKGGVGKTTLTANLASALKLLGEPVLAI 36 (246)
T ss_pred cEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEE
Confidence 577777 46799999999999999999987543
No 162
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=79.72 E-value=1.8 Score=41.24 Aligned_cols=30 Identities=40% Similarity=0.499 Sum_probs=21.3
Q ss_pred EEEEeCC--CCchHHHHHHHHHHHHcCCCeEE
Q 009293 183 LIAVSGS--HGKSTTASMLAYVLKAMGDDLTA 212 (538)
Q Consensus 183 vI~VTGT--nGKTTTt~ml~~iL~~~G~~v~~ 212 (538)
+|.+-|- .|||||..=|++.++..|.++..
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~l 34 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKLKGKKVAL 34 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEE
T ss_pred EEEEECCCCCchHhHHHHHHHHHhhcccccee
Confidence 4444443 48999999999999988887654
No 163
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=79.70 E-value=2.7 Score=42.03 Aligned_cols=32 Identities=31% Similarity=0.402 Sum_probs=26.4
Q ss_pred cEEEEe--CCCCchHHHHHHHHHHHHcCCCeEEE
Q 009293 182 NLIAVS--GSHGKSTTASMLAYVLKAMGDDLTAI 213 (538)
Q Consensus 182 ~vI~VT--GTnGKTTTt~ml~~iL~~~G~~v~~~ 213 (538)
++|+|+ |=.|||||+.-|+..|.+.|++|..+
T Consensus 2 ~~iav~~KGGVGKTT~~~nLA~~La~~G~rVLlI 35 (274)
T PRK13235 2 RKVAIYGKGGIGKSTTTQNTVAGLAEMGKKVMVV 35 (274)
T ss_pred CEEEEeCCCCccHHHHHHHHHHHHHHCCCcEEEE
Confidence 467777 55679999999999999999997543
No 164
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=79.18 E-value=2.7 Score=44.54 Aligned_cols=34 Identities=24% Similarity=0.169 Sum_probs=29.9
Q ss_pred CCcEEEEe---CCCCchHHHHHHHHHHHHcCCCeEEE
Q 009293 180 KYNLIAVS---GSHGKSTTASMLAYVLKAMGDDLTAI 213 (538)
Q Consensus 180 ~~~vI~VT---GTnGKTTTt~ml~~iL~~~G~~v~~~ 213 (538)
..++|+|+ |=.|||||+.-+++.|...|++|..+
T Consensus 105 ~~~vIai~n~KGGVGKTT~a~nLA~~LA~~G~rVLlI 141 (388)
T PRK13705 105 FPPVIGVAAHKGGVYKTSVSVHLAQDLALKGLRVLLV 141 (388)
T ss_pred CCeEEEEECCCCCchHHHHHHHHHHHHHhcCCCeEEE
Confidence 46799999 88899999999999999999997543
No 165
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=79.12 E-value=3 Score=37.42 Aligned_cols=33 Identities=30% Similarity=0.372 Sum_probs=25.8
Q ss_pred cEEEEeC--CCCchHHHHHHHHHHHHcCCCeEEEe
Q 009293 182 NLIAVSG--SHGKSTTASMLAYVLKAMGDDLTAIV 214 (538)
Q Consensus 182 ~vI~VTG--TnGKTTTt~ml~~iL~~~G~~v~~~~ 214 (538)
|+|+|.| -.||||.+..|-.-|...|++++.+.
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik 35 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRRGYRVAVIK 35 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHcCCceEEEE
Confidence 5788888 46999999999999999999987543
No 166
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=79.07 E-value=3 Score=42.97 Aligned_cols=35 Identities=29% Similarity=0.303 Sum_probs=30.4
Q ss_pred CCcEEEE----eCCCCchHHHHHHHHHHHHcCCCeEEEe
Q 009293 180 KYNLIAV----SGSHGKSTTASMLAYVLKAMGDDLTAIV 214 (538)
Q Consensus 180 ~~~vI~V----TGTnGKTTTt~ml~~iL~~~G~~v~~~~ 214 (538)
..|+|.| .|-.|||+++..|+..|++.|++++.+.
T Consensus 48 ~~pvIsVGNi~vGGtGKTP~v~~L~~~l~~~g~~~~ils 86 (325)
T PRK00652 48 PVPVIVVGNITVGGTGKTPVVIALAEQLQARGLKPGVVS 86 (325)
T ss_pred CCCEEEEcCeeCCCCChHHHHHHHHHHHHHCCCeEEEEC
Confidence 4678988 7999999999999999999999976543
No 167
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=79.07 E-value=3.1 Score=38.24 Aligned_cols=62 Identities=18% Similarity=0.094 Sum_probs=41.7
Q ss_pred ceEEEEeechhhHHHHHHHHHhCCCcEEEecCCCChhHHHHHHCCCeEEeCCCCCCcCCCCCCCCCCEEEE
Q 009293 76 GWIHFVGIGGSGLSALAKLALKQGFEVSGSDLVWSSYMEGLLEAGANLHIGHSVSNIQGNDGSRFPNAVVA 146 (538)
Q Consensus 76 ~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~d~vvv 146 (538)
++|.|||.|.-|++- |.-|+..|.+|..-........+.+.+.|-.+.-..+. . +..|+|++
T Consensus 5 k~IAViGyGsQG~a~-AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf~v~~~~eA--v------~~aDvV~~ 66 (165)
T PF07991_consen 5 KTIAVIGYGSQGHAH-ALNLRDSGVNVIVGLREGSASWEKAKADGFEVMSVAEA--V------KKADVVML 66 (165)
T ss_dssp SEEEEES-SHHHHHH-HHHHHHCC-EEEEEE-TTCHHHHHHHHTT-ECCEHHHH--H------HC-SEEEE
T ss_pred CEEEEECCChHHHHH-HHHHHhCCCCEEEEecCCCcCHHHHHHCCCeeccHHHH--H------hhCCEEEE
Confidence 679999999999974 88889999999977765555777888888766432211 1 14677776
No 168
>PRK10037 cell division protein; Provisional
Probab=78.99 E-value=3 Score=41.16 Aligned_cols=32 Identities=22% Similarity=0.585 Sum_probs=26.8
Q ss_pred cEEEEe---CCCCchHHHHHHHHHHHHcCCCeEEE
Q 009293 182 NLIAVS---GSHGKSTTASMLAYVLKAMGDDLTAI 213 (538)
Q Consensus 182 ~vI~VT---GTnGKTTTt~ml~~iL~~~G~~v~~~ 213 (538)
++|+|. |=.|||||+.-|+..|.+.|++|..+
T Consensus 2 ~~iav~n~KGGvGKTT~a~nLA~~La~~G~rVLlI 36 (250)
T PRK10037 2 AILGLQGVRGGVGTTSITAALAWSLQMLGENVLVI 36 (250)
T ss_pred cEEEEecCCCCccHHHHHHHHHHHHHhcCCcEEEE
Confidence 467777 66789999999999999999997544
No 169
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=78.96 E-value=28 Score=37.93 Aligned_cols=114 Identities=15% Similarity=0.195 Sum_probs=63.4
Q ss_pred eEEEEeechhhHHHHHHHHHhC--CCcEEEecCCCCh--------------hHHHHHHC--CCeEEeCCCCC-CcCCCCC
Q 009293 77 WIHFVGIGGSGLSALAKLALKQ--GFEVSGSDLVWSS--------------YMEGLLEA--GANLHIGHSVS-NIQGNDG 137 (538)
Q Consensus 77 ~v~vlG~G~sG~~~la~~l~~~--G~~v~g~D~~~~~--------------~~~~~~~~--Ga~~~~~~~~~-~~~~~~~ 137 (538)
+|.|+|.|-.|... |..|+.+ |++|.|.|.+... -++++... |-.+.+..+.. .+
T Consensus 3 ~I~ViG~GyvGl~~-A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i----- 76 (473)
T PLN02353 3 KICCIGAGYVGGPT-MAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHV----- 76 (473)
T ss_pred EEEEECCCHHHHHH-HHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHHH-----
Confidence 58999999999975 6777777 5889999964221 12222211 11121221111 11
Q ss_pred CCCCCEEEEcCCCCCC--------CHHHHHHHHCCCCeeeHHHHHHHHhcCCcEEEEeCCCCchHHHHHHHHHHH
Q 009293 138 SRFPNAVVASSAIPQD--------NVEILHAKSVGVPIYKRDYWLAKLTEKYNLIAVSGSHGKSTTASMLAYVLK 204 (538)
Q Consensus 138 ~~~~d~vvvsp~i~~~--------~~~l~~a~~~gi~vi~~~~~l~~~~~~~~vI~VTGTnGKTTTt~ml~~iL~ 204 (538)
...|++++..+-|.+ .+.+..... ..+-++...++..+|.+--|.-=+||-.+...+++
T Consensus 77 -~~advi~I~V~TP~~~~g~~~~~~~Dls~v~~-------a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~ 143 (473)
T PLN02353 77 -AEADIVFVSVNTPTKTRGLGAGKAADLTYWES-------AARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTH 143 (473)
T ss_pred -hcCCEEEEEeCCCCCCCCCcCCCCCcHHHHHH-------HHHHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHh
Confidence 247888886655442 233222211 12333433345568888888888888877766664
No 170
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=78.90 E-value=4.3 Score=41.66 Aligned_cols=54 Identities=17% Similarity=0.141 Sum_probs=37.3
Q ss_pred hhhhhhcCCCceEEEEeechhhHHHHHHHHHhCCCcEEEecCCCChhHHHHHHCCCeE
Q 009293 66 ECIVDFKNRKGWIHFVGIGGSGLSALAKLALKQGFEVSGSDLVWSSYMEGLLEAGANL 123 (538)
Q Consensus 66 ~~~~~~~~~~~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~~~~~~~~~~Ga~~ 123 (538)
.....+++ ++|.|||+|..|++ +|..|+..|.+|.+.|.. ..-.+.+.+.|+.+
T Consensus 9 ~~~~~Lkg--KtVGIIG~GsIG~a-mA~nL~d~G~~ViV~~r~-~~s~~~A~~~G~~v 62 (335)
T PRK13403 9 ANVELLQG--KTVAVIGYGSQGHA-QAQNLRDSGVEVVVGVRP-GKSFEVAKADGFEV 62 (335)
T ss_pred CChhhhCc--CEEEEEeEcHHHHH-HHHHHHHCcCEEEEEECc-chhhHHHHHcCCEE
Confidence 33445566 56999999999997 477788899999998743 22223344557654
No 171
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=78.89 E-value=3.1 Score=40.74 Aligned_cols=32 Identities=25% Similarity=0.376 Sum_probs=26.6
Q ss_pred cEEEEe---CCCCchHHHHHHHHHHHHcCCCeEEE
Q 009293 182 NLIAVS---GSHGKSTTASMLAYVLKAMGDDLTAI 213 (538)
Q Consensus 182 ~vI~VT---GTnGKTTTt~ml~~iL~~~G~~v~~~ 213 (538)
++|+|+ |=.|||||+..++..|...|++|..+
T Consensus 2 ~iI~v~n~KGGvGKTT~a~nLA~~la~~G~~Vlli 36 (231)
T PRK13849 2 KLLTFCSFKGGAGKTTALMGLCAALASDGKRVALF 36 (231)
T ss_pred eEEEEECCCCCccHHHHHHHHHHHHHhCCCcEEEE
Confidence 577777 55689999999999999999987543
No 172
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=78.84 E-value=3 Score=40.76 Aligned_cols=33 Identities=27% Similarity=0.314 Sum_probs=28.3
Q ss_pred CcEEEEeC--CCCchHHHHHHHHHHHHcCCCeEEE
Q 009293 181 YNLIAVSG--SHGKSTTASMLAYVLKAMGDDLTAI 213 (538)
Q Consensus 181 ~~vI~VTG--TnGKTTTt~ml~~iL~~~G~~v~~~ 213 (538)
+++|+|+| -.||||++.-+...|+..|++++.+
T Consensus 1 m~vi~ivG~~gsGKTtl~~~l~~~L~~~G~~V~vi 35 (229)
T PRK14494 1 MRAIGVIGFKDSGKTTLIEKILKNLKERGYRVATA 35 (229)
T ss_pred CeEEEEECCCCChHHHHHHHHHHHHHhCCCeEEEE
Confidence 36899999 6799999999999999999997654
No 173
>PLN02688 pyrroline-5-carboxylate reductase
Probab=78.80 E-value=9.9 Score=37.68 Aligned_cols=63 Identities=14% Similarity=0.259 Sum_probs=41.0
Q ss_pred eEEEEeechhhHHHHHHHHHhCCC----cEEEe-cCCCChhHHHHHHCCCeEEeCCCCCCcCCCCCCCCCCEEEEcC
Q 009293 77 WIHFVGIGGSGLSALAKLALKQGF----EVSGS-DLVWSSYMEGLLEAGANLHIGHSVSNIQGNDGSRFPNAVVASS 148 (538)
Q Consensus 77 ~v~vlG~G~sG~~~la~~l~~~G~----~v~g~-D~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~d~vvvsp 148 (538)
+|.|||.|.-|.+ +++-|...|+ ++.++ |.+ .+-.+.+.+.|+...- +..... +..|+|++..
T Consensus 2 kI~~IG~G~mG~a-~a~~L~~~g~~~~~~i~v~~~r~-~~~~~~~~~~g~~~~~--~~~e~~-----~~aDvVil~v 69 (266)
T PLN02688 2 RVGFIGAGKMAEA-IARGLVASGVVPPSRISTADDSN-PARRDVFQSLGVKTAA--SNTEVV-----KSSDVIILAV 69 (266)
T ss_pred eEEEECCcHHHHH-HHHHHHHCCCCCcceEEEEeCCC-HHHHHHHHHcCCEEeC--ChHHHH-----hcCCEEEEEE
Confidence 4889999999987 4666667888 88888 543 3334556677876532 211111 1478888875
No 174
>PRK14974 cell division protein FtsY; Provisional
Probab=78.65 E-value=3.1 Score=43.13 Aligned_cols=33 Identities=39% Similarity=0.468 Sum_probs=27.6
Q ss_pred CCcEEEEeCCC--CchHHHHHHHHHHHHcCCCeEE
Q 009293 180 KYNLIAVSGSH--GKSTTASMLAYVLKAMGDDLTA 212 (538)
Q Consensus 180 ~~~vI~VTGTn--GKTTTt~ml~~iL~~~G~~v~~ 212 (538)
+..+|+++|.+ |||||+..+++.|+..|+++..
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~l 173 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVI 173 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 35689999965 6999999999999999887644
No 175
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=78.55 E-value=1.9 Score=40.07 Aligned_cols=25 Identities=36% Similarity=0.620 Sum_probs=19.5
Q ss_pred cEEEEeCC--CCchHHHHHHHHHHHHcCCCe
Q 009293 182 NLIAVSGS--HGKSTTASMLAYVLKAMGDDL 210 (538)
Q Consensus 182 ~vI~VTGT--nGKTTTt~ml~~iL~~~G~~v 210 (538)
+.|+|||| .||||+|..|+ - .|+++
T Consensus 1 m~I~ITGTPGvGKTT~~~~L~-~---lg~~~ 27 (180)
T COG1936 1 MLIAITGTPGVGKTTVCKLLR-E---LGYKV 27 (180)
T ss_pred CeEEEeCCCCCchHHHHHHHH-H---hCCce
Confidence 36999999 47999998888 3 37764
No 176
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=78.46 E-value=2.8 Score=38.54 Aligned_cols=52 Identities=13% Similarity=0.087 Sum_probs=31.6
Q ss_pred hhcCCCceEEEEeechhhHHHHHHHHHhCCCcEEEecCCCChhHHHHHHCCCeE
Q 009293 70 DFKNRKGWIHFVGIGGSGLSALAKLALKQGFEVSGSDLVWSSYMEGLLEAGANL 123 (538)
Q Consensus 70 ~~~~~~~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~~~~~~~~~~Ga~~ 123 (538)
++.-.-++++|+|+|..|++. |..|+..|.+|.+.|.++.. .-++...|-.+
T Consensus 18 ~~~l~Gk~vvV~GYG~vG~g~-A~~lr~~Ga~V~V~e~DPi~-alqA~~dGf~v 69 (162)
T PF00670_consen 18 NLMLAGKRVVVIGYGKVGKGI-ARALRGLGARVTVTEIDPIR-ALQAAMDGFEV 69 (162)
T ss_dssp -S--TTSEEEEE--SHHHHHH-HHHHHHTT-EEEEE-SSHHH-HHHHHHTT-EE
T ss_pred ceeeCCCEEEEeCCCcccHHH-HHHHhhCCCEEEEEECChHH-HHHhhhcCcEe
Confidence 344334679999999999985 88889999999999965322 22444556554
No 177
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=78.30 E-value=3.1 Score=44.02 Aligned_cols=34 Identities=44% Similarity=0.534 Sum_probs=29.2
Q ss_pred CCcEEEEe---CCCCchHHHHHHHHHHHHcCCCeEEE
Q 009293 180 KYNLIAVS---GSHGKSTTASMLAYVLKAMGDDLTAI 213 (538)
Q Consensus 180 ~~~vI~VT---GTnGKTTTt~ml~~iL~~~G~~v~~~ 213 (538)
+.++|+|+ |-.|||||+..++..|...|++|..+
T Consensus 103 ~~~vI~v~n~KGGvGKTT~a~nLA~~La~~G~rVLlI 139 (387)
T TIGR03453 103 HLQVIAVTNFKGGSGKTTTAAHLAQYLALRGYRVLAI 139 (387)
T ss_pred CceEEEEEccCCCcCHHHHHHHHHHHHHhcCCCEEEE
Confidence 45789988 67899999999999999999997544
No 178
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=78.14 E-value=3.1 Score=41.36 Aligned_cols=31 Identities=42% Similarity=0.527 Sum_probs=25.4
Q ss_pred EEEEe--CCCCchHHHHHHHHHHHHcCCCeEEE
Q 009293 183 LIAVS--GSHGKSTTASMLAYVLKAMGDDLTAI 213 (538)
Q Consensus 183 vI~VT--GTnGKTTTt~ml~~iL~~~G~~v~~~ 213 (538)
+|+|+ |=.|||||+.-|++.|...|++|..+
T Consensus 2 ~i~v~gKGGvGKTT~a~nLA~~la~~G~rvlli 34 (267)
T cd02032 2 VLAVYGKGGIGKSTTSSNLSVALAKRGKKVLQI 34 (267)
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 35555 56789999999999999999997544
No 179
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=78.05 E-value=3 Score=42.00 Aligned_cols=48 Identities=29% Similarity=0.425 Sum_probs=35.9
Q ss_pred CceEEEEeechhhHHHHHHHHHhCCCcEEEecCCCChhHHHHHHCCCeEE
Q 009293 75 KGWIHFVGIGGSGLSALAKLALKQGFEVSGSDLVWSSYMEGLLEAGANLH 124 (538)
Q Consensus 75 ~~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~~~~~~~~~~Ga~~~ 124 (538)
..+|.|||+|.-|.+- +.-|.+.||+|+++|...+ -.+++.+.|+.+.
T Consensus 35 ~~~iGFIGLG~MG~~M-~~nLik~G~kVtV~dr~~~-k~~~f~~~Ga~v~ 82 (327)
T KOG0409|consen 35 KTRIGFIGLGNMGSAM-VSNLIKAGYKVTVYDRTKD-KCKEFQEAGARVA 82 (327)
T ss_pred cceeeEEeeccchHHH-HHHHHHcCCEEEEEeCcHH-HHHHHHHhchhhh
Confidence 3469999999888764 5666679999999996432 3456788898764
No 180
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=77.88 E-value=3.1 Score=41.72 Aligned_cols=32 Identities=28% Similarity=0.359 Sum_probs=26.4
Q ss_pred cEEEEe--CCCCchHHHHHHHHHHHHcCCCeEEE
Q 009293 182 NLIAVS--GSHGKSTTASMLAYVLKAMGDDLTAI 213 (538)
Q Consensus 182 ~vI~VT--GTnGKTTTt~ml~~iL~~~G~~v~~~ 213 (538)
++|+|. |=.|||||+.-|++.|.+.|++|..+
T Consensus 2 ~~i~~~gKGGVGKTT~a~nLA~~La~~G~rVLli 35 (279)
T PRK13230 2 RKFCFYGKGGIGKSTTVCNIAAALAESGKKVLVV 35 (279)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHhCCCEEEEE
Confidence 466666 56789999999999999999986543
No 181
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=77.63 E-value=3.2 Score=41.28 Aligned_cols=32 Identities=38% Similarity=0.494 Sum_probs=26.4
Q ss_pred cEEEEe--CCCCchHHHHHHHHHHHHcCCCeEEE
Q 009293 182 NLIAVS--GSHGKSTTASMLAYVLKAMGDDLTAI 213 (538)
Q Consensus 182 ~vI~VT--GTnGKTTTt~ml~~iL~~~G~~v~~~ 213 (538)
++|+|+ |=.|||||+.-|++.|...|++|..+
T Consensus 3 ~iIav~~KGGVGKTT~~~nLA~~la~~G~kVLli 36 (270)
T PRK13185 3 LVLAVYGKGGIGKSTTSSNLSAAFAKLGKKVLQI 36 (270)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 466666 67799999999999999999986543
No 182
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=77.62 E-value=3.4 Score=41.29 Aligned_cols=34 Identities=29% Similarity=0.332 Sum_probs=29.2
Q ss_pred cCCcEEEEe---CCCCchHHHHHHHHHHHHcCCCeEE
Q 009293 179 EKYNLIAVS---GSHGKSTTASMLAYVLKAMGDDLTA 212 (538)
Q Consensus 179 ~~~~vI~VT---GTnGKTTTt~ml~~iL~~~G~~v~~ 212 (538)
+..++|+|| |--||||++..++..|...|++|..
T Consensus 101 ~~~~vi~vts~~~g~Gktt~a~nLA~~la~~g~~Vll 137 (274)
T TIGR03029 101 EGRKALAVVSAKSGEGCSYIAANLAIVFSQLGEKTLL 137 (274)
T ss_pred CCCeEEEEECCCCCCCHHHHHHHHHHHHHhcCCeEEE
Confidence 456899999 6779999999999999999988643
No 183
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=77.61 E-value=7.9 Score=38.25 Aligned_cols=34 Identities=18% Similarity=0.126 Sum_probs=29.5
Q ss_pred ceEEEEeechhhHHHHHHHHHhCCCcEEEecCCCC
Q 009293 76 GWIHFVGIGGSGLSALAKLALKQGFEVSGSDLVWS 110 (538)
Q Consensus 76 ~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~ 110 (538)
.+++|+|.|..+.+ ++.+++..|++|.+.|.+++
T Consensus 101 ~~L~IfGaG~va~~-la~la~~lGf~V~v~D~R~~ 134 (246)
T TIGR02964 101 PHVVLFGAGHVGRA-LVRALAPLPCRVTWVDSREA 134 (246)
T ss_pred CEEEEECCcHHHHH-HHHHHhcCCCEEEEEeCCcc
Confidence 56889999999996 68999999999999996643
No 184
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=77.58 E-value=12 Score=37.78 Aligned_cols=118 Identities=16% Similarity=0.079 Sum_probs=67.1
Q ss_pred ceEEEEeechhhHHHHHHHHHhCCCcEEEecCCCChhHHHH-HHCCCeEEeCCCCCCcCCCCCCCCCCEEEEcCCCCCC-
Q 009293 76 GWIHFVGIGGSGLSALAKLALKQGFEVSGSDLVWSSYMEGL-LEAGANLHIGHSVSNIQGNDGSRFPNAVVASSAIPQD- 153 (538)
Q Consensus 76 ~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~~~~~~~-~~~Ga~~~~~~~~~~~~~~~~~~~~d~vvvsp~i~~~- 153 (538)
+++.|+|-+..---.+|.+|..+|+.|+....+-. .+++. .+..+.+...-.+..+.. ++ -+...+|+..|+...
T Consensus 158 k~vvViGrS~iVGkPla~lL~~~~AtVtichs~T~-nl~~~~~~ADIvI~AvGk~~~i~~-~~-ik~gaiVIDvGin~~~ 234 (282)
T PRK14182 158 KRALVVGRSNIVGKPMAMMLLERHATVTIAHSRTA-DLAGEVGRADILVAAIGKAELVKG-AW-VKEGAVVIDVGMNRLA 234 (282)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCC-CHHHHHhhCCEEEEecCCcCccCH-HH-cCCCCEEEEeeceecC
Confidence 67889998866666789999999999998764422 23332 222332221112222211 01 035678888887652
Q ss_pred CHHHHHHHHCCCCeeeHHHHHHHHhcCCcEEEEeCCCCchHHHHHHHHHHHHc
Q 009293 154 NVEILHAKSVGVPIYKRDYWLAKLTEKYNLIAVSGSHGKSTTASMLAYVLKAM 206 (538)
Q Consensus 154 ~~~l~~a~~~gi~vi~~~~~l~~~~~~~~vI~VTGTnGKTTTt~ml~~iL~~~ 206 (538)
+ | .+....+|-.-......+-=|-|--|.=||+.++.++++.+
T Consensus 235 ~---------g-kl~GDVd~~~v~~~a~~iTPVPGGVGp~T~a~L~~N~~~~~ 277 (282)
T PRK14182 235 D---------G-KLVGDVEFAAAAARASAITPVPGGVGPMTRAMLLVNTVELA 277 (282)
T ss_pred C---------C-CeeCCCCHHHHHhhccEecCCCCCChHHHHHHHHHHHHHHH
Confidence 1 1 23333332211111122333458899999999999999865
No 185
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=77.57 E-value=7.8 Score=30.68 Aligned_cols=52 Identities=23% Similarity=0.200 Sum_probs=39.0
Q ss_pred eEEEEeechhhHHHHHHHHHhCCCcEEEecCCCC------h-----hHHHHHHCCCeEEeCCCC
Q 009293 77 WIHFVGIGGSGLSALAKLALKQGFEVSGSDLVWS------S-----YMEGLLEAGANLHIGHSV 129 (538)
Q Consensus 77 ~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~------~-----~~~~~~~~Ga~~~~~~~~ 129 (538)
+|.|+|.|.+|+-. |..|+..|.+|+..+.... + ..+.+.+.|+.+..+...
T Consensus 1 ~vvViGgG~ig~E~-A~~l~~~g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v 63 (80)
T PF00070_consen 1 RVVVIGGGFIGIEL-AEALAELGKEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVHTNTKV 63 (80)
T ss_dssp EEEEESSSHHHHHH-HHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEEESEEE
T ss_pred CEEEECcCHHHHHH-HHHHHHhCcEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEEeCCEE
Confidence 47899999999985 7888889999998875421 1 234567889998776543
No 186
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=77.52 E-value=3.3 Score=42.13 Aligned_cols=31 Identities=32% Similarity=0.544 Sum_probs=25.7
Q ss_pred EEEEe--CCCCchHHHHHHHHHHHHcCCCeEEE
Q 009293 183 LIAVS--GSHGKSTTASMLAYVLKAMGDDLTAI 213 (538)
Q Consensus 183 vI~VT--GTnGKTTTt~ml~~iL~~~G~~v~~~ 213 (538)
+|+|. |--|||||+..|++.|.+.|++|..+
T Consensus 2 vIav~gKGGvGKTT~a~nLA~~La~~g~rVLlI 34 (296)
T TIGR02016 2 IIAIYGKGGSGKSFTTTNLSHMMAEMGKRVLQL 34 (296)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 45555 67899999999999999999997543
No 187
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=77.49 E-value=14 Score=37.06 Aligned_cols=65 Identities=14% Similarity=0.091 Sum_probs=41.3
Q ss_pred ceEEEEeechhhHHHHHHHHHhCC----CcEEEecCCCChhHHHHHH-CCCeEEeCCCCCCcCCCCCCCCCCEEEEcC
Q 009293 76 GWIHFVGIGGSGLSALAKLALKQG----FEVSGSDLVWSSYMEGLLE-AGANLHIGHSVSNIQGNDGSRFPNAVVASS 148 (538)
Q Consensus 76 ~~v~vlG~G~sG~~~la~~l~~~G----~~v~g~D~~~~~~~~~~~~-~Ga~~~~~~~~~~~~~~~~~~~~d~vvvsp 148 (538)
.+|.|||.|.-|.+- +.-|...| +++.++|....+..+.+.+ .|+...- +..... +..|+||+..
T Consensus 4 mkI~~IG~G~mG~ai-a~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~~g~~~~~--~~~e~~-----~~aDvVilav 73 (279)
T PRK07679 4 QNISFLGAGSIAEAI-IGGLLHANVVKGEQITVSNRSNETRLQELHQKYGVKGTH--NKKELL-----TDANILFLAM 73 (279)
T ss_pred CEEEEECccHHHHHH-HHHHHHCCCCCcceEEEECCCCHHHHHHHHHhcCceEeC--CHHHHH-----hcCCEEEEEe
Confidence 469999999999874 55556677 7888888654445555544 4765432 211111 2478888864
No 188
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=77.29 E-value=3.9 Score=43.73 Aligned_cols=52 Identities=27% Similarity=0.352 Sum_probs=35.1
Q ss_pred CceEEEEeechhhHHHHHHHHHhCCCcEEEe---cCC-----CChhHHHHHHCCCeEEeC
Q 009293 75 KGWIHFVGIGGSGLSALAKLALKQGFEVSGS---DLV-----WSSYMEGLLEAGANLHIG 126 (538)
Q Consensus 75 ~~~v~vlG~G~sG~~~la~~l~~~G~~v~g~---D~~-----~~~~~~~~~~~Ga~~~~~ 126 (538)
.++|.|||+|.+|.+|..+|+..-+.+|... |.- ..+|.+..++.||..+-|
T Consensus 21 ~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGRI~ti~~~d~~ielGAqwihG 80 (498)
T KOG0685|consen 21 NAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGRIHTIPFADGVIELGAQWIHG 80 (498)
T ss_pred CceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCceEeeEEcCCCeEeecceeecC
Confidence 3579999999999999888886555666644 321 124555566667766554
No 189
>PTZ00188 adrenodoxin reductase; Provisional
Probab=77.12 E-value=3 Score=45.40 Aligned_cols=34 Identities=18% Similarity=0.135 Sum_probs=29.0
Q ss_pred CceEEEEeechhhHHHHHHHHHhCCCcEEEecCC
Q 009293 75 KGWIHFVGIGGSGLSALAKLALKQGFEVSGSDLV 108 (538)
Q Consensus 75 ~~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~ 108 (538)
.++|+|||.|.+|+.|...+++..|++|+..|..
T Consensus 39 ~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~ 72 (506)
T PTZ00188 39 PFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKL 72 (506)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecC
Confidence 4679999999999998666777789999999843
No 190
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=77.08 E-value=19 Score=36.34 Aligned_cols=118 Identities=14% Similarity=0.058 Sum_probs=66.8
Q ss_pred ceEEEEeechhhHHHHHHHHHh--CCCcEEEecCCCChhHHH-HHHCCCeEEeCCCCCCcCCCCCCCCCCEEEEcCCCCC
Q 009293 76 GWIHFVGIGGSGLSALAKLALK--QGFEVSGSDLVWSSYMEG-LLEAGANLHIGHSVSNIQGNDGSRFPNAVVASSAIPQ 152 (538)
Q Consensus 76 ~~v~vlG~G~sG~~~la~~l~~--~G~~v~g~D~~~~~~~~~-~~~~Ga~~~~~~~~~~~~~~~~~~~~d~vvvsp~i~~ 152 (538)
+++.|||-+..--..+|.+|.. +|+.|+....+.. .+.+ ..+..+.+...-.+..+.. ++ -++..+|+..|+.+
T Consensus 159 k~vvViGrS~~VGkPla~lL~~~~~~atVtvchs~T~-~l~~~~k~ADIvV~AvGkp~~i~~-~~-ik~GavVIDvGin~ 235 (284)
T PRK14193 159 AHVVVIGRGVTVGRPIGLLLTRRSENATVTLCHTGTR-DLAAHTRRADIIVAAAGVAHLVTA-DM-VKPGAAVLDVGVSR 235 (284)
T ss_pred CEEEEECCCCcchHHHHHHHhhccCCCEEEEeCCCCC-CHHHHHHhCCEEEEecCCcCccCH-HH-cCCCCEEEEccccc
Confidence 6688999886655567888887 7999998764422 2333 3333333322222222211 11 13567888888775
Q ss_pred CCHHHHHHHHCCCCeeeHHHHHHHHhcCCcEEEEeCCCCchHHHHHHHHHHHHc
Q 009293 153 DNVEILHAKSVGVPIYKRDYWLAKLTEKYNLIAVSGSHGKSTTASMLAYVLKAM 206 (538)
Q Consensus 153 ~~~~l~~a~~~gi~vi~~~~~l~~~~~~~~vI~VTGTnGKTTTt~ml~~iL~~~ 206 (538)
.. .| .+....+ -.-......+-=|-|--|.=||+.++.++++.+
T Consensus 236 ~~--------~g-kl~GDvd-~~v~~~a~~iTPVPGGVGp~T~a~L~~N~~~a~ 279 (284)
T PRK14193 236 AG--------DG-KLVGDVH-PDVWEVAGAVSPNPGGVGPMTRAFLLTNVVERA 279 (284)
T ss_pred cC--------CC-cEEeecC-HhHHhhCCEEeCCCCChhHHHHHHHHHHHHHHH
Confidence 20 01 2333322 111111223444558899999999999999875
No 191
>PRK07233 hypothetical protein; Provisional
Probab=77.00 E-value=2.2 Score=45.27 Aligned_cols=30 Identities=40% Similarity=0.382 Sum_probs=26.5
Q ss_pred eEEEEeechhhHHHHHHHHHhCCCcEEEecC
Q 009293 77 WIHFVGIGGSGLSALAKLALKQGFEVSGSDL 107 (538)
Q Consensus 77 ~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~ 107 (538)
+|.|||.|.+|++| |.+|+++|++|...+.
T Consensus 1 ~vvVIGaGiaGL~a-A~~L~~~G~~v~vlE~ 30 (434)
T PRK07233 1 KIAIVGGGIAGLAA-AYRLAKRGHEVTVFEA 30 (434)
T ss_pred CEEEECCCHHHHHH-HHHHHHCCCcEEEEEe
Confidence 37899999999997 7888989999998874
No 192
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=76.81 E-value=3.5 Score=40.47 Aligned_cols=32 Identities=28% Similarity=0.481 Sum_probs=26.7
Q ss_pred cEEEEeC---CCCchHHHHHHHHHHHHcCCCeEEE
Q 009293 182 NLIAVSG---SHGKSTTASMLAYVLKAMGDDLTAI 213 (538)
Q Consensus 182 ~vI~VTG---TnGKTTTt~ml~~iL~~~G~~v~~~ 213 (538)
++|+|++ -.||||++..++..|...|++|..+
T Consensus 2 ~ii~v~s~kGGvGKTt~a~~lA~~la~~g~~vlli 36 (261)
T TIGR01968 2 RVIVITSGKGGVGKTTTTANLGTALARLGKKVVLI 36 (261)
T ss_pred eEEEEecCCCCccHHHHHHHHHHHHHHcCCeEEEE
Confidence 5777774 6789999999999999999987544
No 193
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=76.74 E-value=11 Score=38.56 Aligned_cols=64 Identities=14% Similarity=0.074 Sum_probs=40.6
Q ss_pred ceEEEEeechhhHHHHHHHHHhCCCcEEEecCCCChhHHHHHHCCCeEEeCCCCCCcCCCCCCCCCCEEEEcC
Q 009293 76 GWIHFVGIGGSGLSALAKLALKQGFEVSGSDLVWSSYMEGLLEAGANLHIGHSVSNIQGNDGSRFPNAVVASS 148 (538)
Q Consensus 76 ~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~d~vvvsp 148 (538)
++|.|||.|.-|.+ +|.-|...|.++...+....+..+.+.+.|+... ...+.. +..|+|++..
T Consensus 4 kkIgiIG~G~mG~A-iA~~L~~sG~~Viv~~~~~~~~~~~a~~~Gv~~~--s~~ea~------~~ADiVvLaV 67 (314)
T TIGR00465 4 KTVAIIGYGSQGHA-QALNLRDSGLNVIVGLRKGGASWKKATEDGFKVG--TVEEAI------PQADLIMNLL 67 (314)
T ss_pred CEEEEEeEcHHHHH-HHHHHHHCCCeEEEEECcChhhHHHHHHCCCEEC--CHHHHH------hcCCEEEEeC
Confidence 56999999999986 5777778898876544333233455556787542 111111 2578888853
No 194
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=76.54 E-value=8.1 Score=34.63 Aligned_cols=34 Identities=15% Similarity=0.155 Sum_probs=26.1
Q ss_pred CceEEEEeechhhHHHHHHHHHhCC-CcEEEecCCC
Q 009293 75 KGWIHFVGIGGSGLSALAKLALKQG-FEVSGSDLVW 109 (538)
Q Consensus 75 ~~~v~vlG~G~sG~~~la~~l~~~G-~~v~g~D~~~ 109 (538)
.++++|+|.|+.|.+. +..|+..| ++|.+.|.+.
T Consensus 19 ~~~i~iiG~G~~g~~~-a~~l~~~g~~~v~v~~r~~ 53 (155)
T cd01065 19 GKKVLILGAGGAARAV-AYALAELGAAKIVIVNRTL 53 (155)
T ss_pred CCEEEEECCcHHHHHH-HHHHHHCCCCEEEEEcCCH
Confidence 3679999999999976 55556664 8899998653
No 195
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=76.46 E-value=16 Score=37.23 Aligned_cols=124 Identities=15% Similarity=0.020 Sum_probs=68.6
Q ss_pred ceEEEEeechhhHHHHHHHHHhCCCcEEEecCCCChhHHHH-HHCCCeEEeCCCCCCcCCCCCCCCCCEEEEcCCCCCCC
Q 009293 76 GWIHFVGIGGSGLSALAKLALKQGFEVSGSDLVWSSYMEGL-LEAGANLHIGHSVSNIQGNDGSRFPNAVVASSAIPQDN 154 (538)
Q Consensus 76 ~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~~~~~~~-~~~Ga~~~~~~~~~~~~~~~~~~~~d~vvvsp~i~~~~ 154 (538)
++|.|||-+..--..+|.+|..+|+.|+.....-. .+++. .+..+.+...-.+..+.. ++ -....+|+..|+....
T Consensus 159 k~vvVIGrS~iVGkPla~lL~~~~atVtv~hs~T~-~l~~~~~~ADIvIsAvGkp~~i~~-~~-ik~gavVIDvGin~~~ 235 (297)
T PRK14186 159 KKAVVVGRSILVGKPLALMLLAANATVTIAHSRTQ-DLASITREADILVAAAGRPNLIGA-EM-VKPGAVVVDVGIHRLP 235 (297)
T ss_pred CEEEEECCCccchHHHHHHHHHCCCEEEEeCCCCC-CHHHHHhhCCEEEEccCCcCccCH-HH-cCCCCEEEEecccccc
Confidence 66889998866555689999999999997764322 23332 232333222122222211 01 0356788888876521
Q ss_pred HHHHHHHHCCCCeeeHHHHHHHHhcCCcEEEEeCCCCchHHHHHHHHHHHHcC
Q 009293 155 VEILHAKSVGVPIYKRDYWLAKLTEKYNLIAVSGSHGKSTTASMLAYVLKAMG 207 (538)
Q Consensus 155 ~~l~~a~~~gi~vi~~~~~l~~~~~~~~vI~VTGTnGKTTTt~ml~~iL~~~G 207 (538)
.. .+.| .+....++-.-......+-=|-|--|.=||+.++.++++.+-
T Consensus 236 ~~----~~~g-kl~GDvd~~~v~~~a~~iTPVPGGVGp~T~a~L~~Nl~~a~~ 283 (297)
T PRK14186 236 SS----DGKT-RLCGDVDFEEVEPVAAAITPVPGGVGPMTVTMLLVNTVLSWQ 283 (297)
T ss_pred cc----ccCC-ceeCCccHHHHHhhceEecCCCCCchHHHHHHHHHHHHHHHH
Confidence 00 0011 344444432111112223334477999999999999998763
No 196
>COG3367 Uncharacterized conserved protein [Function unknown]
Probab=76.38 E-value=4.3 Score=41.29 Aligned_cols=84 Identities=27% Similarity=0.350 Sum_probs=54.3
Q ss_pred CCChhHHHHHHCCCeEEeCCCCCCcCCCCCCCCCCEEEEcCCCCCCCHH-HHHHHHCCCCeeeHH------HHH--HH-H
Q 009293 108 VWSSYMEGLLEAGANLHIGHSVSNIQGNDGSRFPNAVVASSAIPQDNVE-ILHAKSVGVPIYKRD------YWL--AK-L 177 (538)
Q Consensus 108 ~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~d~vvvsp~i~~~~~~-l~~a~~~gi~vi~~~------~~l--~~-~ 177 (538)
.|-+++.++.+.|..++-+-+.. + .+.|+ ...|++.|+.+.... ..+ +. +
T Consensus 85 ~~~~~i~eAl~~G~nVvsglh~~-l-------------------s~dp~~~k~A~~~G~rl~dvR~p~~~l~~~~tG~~~ 144 (339)
T COG3367 85 SWREYIVEALEAGMNVVSGLHSF-L-------------------SDDPEFVKLAERTGVRLDDVRKPPLDLEYLCTGMAR 144 (339)
T ss_pred HHHHHHHHHHHhCchhhhhhHHH-h-------------------hcChHHHHHHHHcCCeeEeeccCccchhhhccCccc
Confidence 34467888889998886652211 1 13343 344566677554321 111 11 1
Q ss_pred hcCCcEEEEeCCC---CchHHHHHHHHHHHHcCCCeE
Q 009293 178 TEKYNLIAVSGSH---GKSTTASMLAYVLKAMGDDLT 211 (538)
Q Consensus 178 ~~~~~vI~VTGTn---GKTTTt~ml~~iL~~~G~~v~ 211 (538)
..+.++|.|-||. ||=||+..+...+++.|+++.
T Consensus 145 k~~a~~V~vvGTd~~vGKrTTa~~L~~~~~e~G~~a~ 181 (339)
T COG3367 145 KVDAKVVLVVGTDCAVGKRTTALELREAAREEGIKAG 181 (339)
T ss_pred ccCCcEEEEeccccccchhHHHHHHHHHHHHhCCccc
Confidence 1246799999985 999999999999999999864
No 197
>PRK06696 uridine kinase; Validated
Probab=76.22 E-value=4.8 Score=38.98 Aligned_cols=31 Identities=32% Similarity=0.395 Sum_probs=26.6
Q ss_pred CCcEEEEeC--CCCchHHHHHHHHHHHHcCCCe
Q 009293 180 KYNLIAVSG--SHGKSTTASMLAYVLKAMGDDL 210 (538)
Q Consensus 180 ~~~vI~VTG--TnGKTTTt~ml~~iL~~~G~~v 210 (538)
...+|+|+| -.||||.+..|++.|...|..+
T Consensus 21 ~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v 53 (223)
T PRK06696 21 RPLRVAIDGITASGKTTFADELAEEIKKRGRPV 53 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeE
Confidence 457999998 6799999999999998887643
No 198
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=76.16 E-value=4 Score=41.85 Aligned_cols=33 Identities=36% Similarity=0.393 Sum_probs=28.0
Q ss_pred CCcEEEEeCCC--CchHHHHHHHHHHHHcCCCeEE
Q 009293 180 KYNLIAVSGSH--GKSTTASMLAYVLKAMGDDLTA 212 (538)
Q Consensus 180 ~~~vI~VTGTn--GKTTTt~ml~~iL~~~G~~v~~ 212 (538)
+..+|.+.|.| |||||..=|++.|++.|++|..
T Consensus 138 ~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~Vll 172 (340)
T COG0552 138 KPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLL 172 (340)
T ss_pred CcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEE
Confidence 35688888887 5999999999999999998653
No 199
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=76.14 E-value=3.7 Score=41.07 Aligned_cols=28 Identities=29% Similarity=0.398 Sum_probs=23.9
Q ss_pred EEEEeCC--CCchHHHHHHHHHHHHcCCCe
Q 009293 183 LIAVSGS--HGKSTTASMLAYVLKAMGDDL 210 (538)
Q Consensus 183 vI~VTGT--nGKTTTt~ml~~iL~~~G~~v 210 (538)
+|+|||. .||||++.-+.++|+..|.++
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v 30 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHP 30 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCce
Confidence 5899996 579999999999998887654
No 200
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=76.11 E-value=3.4 Score=39.87 Aligned_cols=30 Identities=23% Similarity=0.270 Sum_probs=24.2
Q ss_pred ceEEEEeechhhHHHHHHHHHhCCCcEEEecCC
Q 009293 76 GWIHFVGIGGSGLSALAKLALKQGFEVSGSDLV 108 (538)
Q Consensus 76 ~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~ 108 (538)
++|+++| ||+|+-+ .+|+.+|++|+|.|..
T Consensus 36 ~rvLd~G-CG~G~da--~~LA~~G~~V~gvD~S 65 (213)
T TIGR03840 36 ARVFVPL-CGKSLDL--AWLAEQGHRVLGVELS 65 (213)
T ss_pred CeEEEeC-CCchhHH--HHHHhCCCeEEEEeCC
Confidence 5788888 4567764 8889999999999943
No 201
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=76.05 E-value=7.9 Score=43.51 Aligned_cols=73 Identities=16% Similarity=0.241 Sum_probs=51.2
Q ss_pred CceEEEEeechhhHHHHHHHHHhCCCcEEEecCCCChhHHHHHHCCCeEEeCCCCC-CcCCCCCCCCCCEEEEcCC
Q 009293 75 KGWIHFVGIGGSGLSALAKLALKQGFEVSGSDLVWSSYMEGLLEAGANLHIGHSVS-NIQGNDGSRFPNAVVASSA 149 (538)
Q Consensus 75 ~~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~~~~~~~~~~Ga~~~~~~~~~-~~~~~~~~~~~d~vvvsp~ 149 (538)
+.+|.|+|.|+.|+. +++.|..+|.++.+.|.++ +.++.+.+.|..++.|+..+ +.....+-+.++.+|+..+
T Consensus 400 ~~~vII~G~Gr~G~~-va~~L~~~g~~vvvID~d~-~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~ 473 (601)
T PRK03659 400 KPQVIIVGFGRFGQV-IGRLLMANKMRITVLERDI-SAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITCN 473 (601)
T ss_pred cCCEEEecCchHHHH-HHHHHHhCCCCEEEEECCH-HHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEeC
Confidence 456889999999996 5888899999999999543 35677888899998884322 1100011235788777654
No 202
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=76.05 E-value=7.3 Score=40.02 Aligned_cols=71 Identities=23% Similarity=0.223 Sum_probs=44.5
Q ss_pred CceEEEEeechhhHHHHHHHHHhCCC--cEEEecCCCCh---hHHHHHH-----CCCeEEeCCCCCCcCCCCCCCCCCEE
Q 009293 75 KGWIHFVGIGGSGLSALAKLALKQGF--EVSGSDLVWSS---YMEGLLE-----AGANLHIGHSVSNIQGNDGSRFPNAV 144 (538)
Q Consensus 75 ~~~v~vlG~G~sG~~~la~~l~~~G~--~v~g~D~~~~~---~~~~~~~-----~Ga~~~~~~~~~~~~~~~~~~~~d~v 144 (538)
.+||.|+|.|..|.+. |..|..+|. ++...|.+.+. .+.++.. ....+. ..+.+++ +.+|+|
T Consensus 6 ~~ki~iiGaG~vG~~~-a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~-~~~~~~~------~~adiv 77 (315)
T PRK00066 6 HNKVVLVGDGAVGSSY-AYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIY-AGDYSDC------KDADLV 77 (315)
T ss_pred CCEEEEECCCHHHHHH-HHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEE-eCCHHHh------CCCCEE
Confidence 4689999999999875 677777786 68889976442 1122221 122222 2222333 368999
Q ss_pred EEcCCCCCC
Q 009293 145 VASSAIPQD 153 (538)
Q Consensus 145 vvsp~i~~~ 153 (538)
|+..|+|+.
T Consensus 78 Iitag~~~k 86 (315)
T PRK00066 78 VITAGAPQK 86 (315)
T ss_pred EEecCCCCC
Confidence 999888754
No 203
>PRK07208 hypothetical protein; Provisional
Probab=75.93 E-value=2.8 Score=45.44 Aligned_cols=33 Identities=33% Similarity=0.485 Sum_probs=28.4
Q ss_pred CCceEEEEeechhhHHHHHHHHHhCCCcEEEecC
Q 009293 74 RKGWIHFVGIGGSGLSALAKLALKQGFEVSGSDL 107 (538)
Q Consensus 74 ~~~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~ 107 (538)
+.++|+|||.|.+|++| |..|+.+|.+|.+.+.
T Consensus 3 ~~~~vvIiGaGisGL~a-A~~L~~~g~~v~v~E~ 35 (479)
T PRK07208 3 NKKSVVIIGAGPAGLTA-AYELLKRGYPVTVLEA 35 (479)
T ss_pred CCCcEEEECcCHHHHHH-HHHHHHCCCcEEEEec
Confidence 44568999999999997 7888889999999874
No 204
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=75.73 E-value=2.9 Score=42.38 Aligned_cols=34 Identities=35% Similarity=0.444 Sum_probs=25.5
Q ss_pred HHHHHh-cCCcEEEEeCCC--CchHHHHHHHHHHHHc
Q 009293 173 WLAKLT-EKYNLIAVSGSH--GKSTTASMLAYVLKAM 206 (538)
Q Consensus 173 ~l~~~~-~~~~vI~VTGTn--GKTTTt~ml~~iL~~~ 206 (538)
|++... +..-+|||+|.| ||||++.+|..+|+..
T Consensus 53 f~~~~~~~~p~IIGIaG~~GSGKSTlar~L~~ll~~~ 89 (290)
T TIGR00554 53 FLGTNGAKIPYIISIAGSVAVGKSTTARILQALLSRW 89 (290)
T ss_pred HHhcccCCCCEEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence 444432 234599999976 6999999999999753
No 205
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=75.57 E-value=20 Score=37.79 Aligned_cols=34 Identities=24% Similarity=0.214 Sum_probs=28.8
Q ss_pred CCceEEEEe-echhhHHHHHHHHHhCCCcEEEecCC
Q 009293 74 RKGWIHFVG-IGGSGLSALAKLALKQGFEVSGSDLV 108 (538)
Q Consensus 74 ~~~~v~vlG-~G~sG~~~la~~l~~~G~~v~g~D~~ 108 (538)
+.++|.|+| .|.-|.+ +|..|...|+.|.++|.+
T Consensus 97 ~~~~I~IiGG~GlmG~s-lA~~l~~~G~~V~~~d~~ 131 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRL-FAKMLTLSGYQVRILEQD 131 (374)
T ss_pred ccceEEEEcCCChhhHH-HHHHHHHCCCeEEEeCCC
Confidence 346799999 9999998 588888899999999953
No 206
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=75.51 E-value=25 Score=35.85 Aligned_cols=45 Identities=22% Similarity=0.240 Sum_probs=33.3
Q ss_pred ceEEEEeechhhHHHHHHHHHhCCCcEEEecCCCChhHHHHHHCCCeEE
Q 009293 76 GWIHFVGIGGSGLSALAKLALKQGFEVSGSDLVWSSYMEGLLEAGANLH 124 (538)
Q Consensus 76 ~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~~~~~~~~~~Ga~~~ 124 (538)
.+|+|+|.|..|.. +|.+|+..|++|+...... .+...+.|..+.
T Consensus 6 m~I~IiG~GaiG~~-lA~~L~~~g~~V~~~~r~~---~~~~~~~g~~~~ 50 (313)
T PRK06249 6 PRIGIIGTGAIGGF-YGAMLARAGFDVHFLLRSD---YEAVRENGLQVD 50 (313)
T ss_pred cEEEEECCCHHHHH-HHHHHHHCCCeEEEEEeCC---HHHHHhCCeEEE
Confidence 46999999999986 5788888999999877532 234556676553
No 207
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=75.48 E-value=15 Score=40.30 Aligned_cols=33 Identities=24% Similarity=0.312 Sum_probs=27.5
Q ss_pred ceEEEEeechhhHHHHHHHHHhCCCcEEEecCCC
Q 009293 76 GWIHFVGIGGSGLSALAKLALKQGFEVSGSDLVW 109 (538)
Q Consensus 76 ~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~ 109 (538)
++|.|||.|.-|.+ +|..++..|+.|..+|.+.
T Consensus 6 ~kV~VIGaG~MG~g-IA~~la~aG~~V~l~d~~~ 38 (503)
T TIGR02279 6 VTVAVIGAGAMGAG-IAQVAASAGHQVLLYDIRA 38 (503)
T ss_pred cEEEEECcCHHHHH-HHHHHHhCCCeEEEEeCCH
Confidence 56999999977775 5777888999999999764
No 208
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=75.48 E-value=4.6 Score=38.54 Aligned_cols=33 Identities=36% Similarity=0.336 Sum_probs=27.6
Q ss_pred CCcEEEEe---CCCCchHHHHHHHHHHHH-cCCCeEE
Q 009293 180 KYNLIAVS---GSHGKSTTASMLAYVLKA-MGDDLTA 212 (538)
Q Consensus 180 ~~~vI~VT---GTnGKTTTt~ml~~iL~~-~G~~v~~ 212 (538)
..++|+|| |-.||||++..|++.|.. .|++|..
T Consensus 34 ~~~vi~v~s~kgG~GkSt~a~nLA~~la~~~g~~VLl 70 (207)
T TIGR03018 34 NNNLIMVTSSLPGEGKSFTAINLAISLAQEYDKTVLL 70 (207)
T ss_pred CCeEEEEECCCCCCCHHHHHHHHHHHHHHhcCCeEEE
Confidence 56899999 577999999999999985 6888643
No 209
>PRK00784 cobyric acid synthase; Provisional
Probab=75.33 E-value=3.2 Score=45.35 Aligned_cols=31 Identities=29% Similarity=0.397 Sum_probs=27.1
Q ss_pred cEEEEeCC---CCchHHHHHHHHHHHHcCCCeEE
Q 009293 182 NLIAVSGS---HGKSTTASMLAYVLKAMGDDLTA 212 (538)
Q Consensus 182 ~vI~VTGT---nGKTTTt~ml~~iL~~~G~~v~~ 212 (538)
+.|-|||| .|||+++..|.+.|++.|++|..
T Consensus 3 ~~ifItGT~T~vGKT~vt~~L~~~l~~~G~~v~~ 36 (488)
T PRK00784 3 KALMVQGTASDAGKSTLVAGLCRILARRGYRVAP 36 (488)
T ss_pred ceEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEec
Confidence 56888887 79999999999999999988653
No 210
>PLN02712 arogenate dehydrogenase
Probab=75.20 E-value=6.6 Score=44.68 Aligned_cols=65 Identities=20% Similarity=0.267 Sum_probs=43.3
Q ss_pred CceEEEEeechhhHHHHHHHHHhCCCcEEEecCCCChhHHHHHHCCCeEEeCCCCCCcCCCCCCCCCCEEEEcC
Q 009293 75 KGWIHFVGIGGSGLSALAKLALKQGFEVSGSDLVWSSYMEGLLEAGANLHIGHSVSNIQGNDGSRFPNAVVASS 148 (538)
Q Consensus 75 ~~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~d~vvvsp 148 (538)
+.+|.|||.|.-|.+ +|..|...|++|.++|.+. ....+.+.|+.... +..++. ...+|+|++..
T Consensus 52 ~~kIgIIG~G~mG~s-lA~~L~~~G~~V~~~dr~~--~~~~A~~~Gv~~~~--d~~e~~----~~~aDvViLav 116 (667)
T PLN02712 52 QLKIAIIGFGNYGQF-LAKTLISQGHTVLAHSRSD--HSLAARSLGVSFFL--DPHDLC----ERHPDVILLCT 116 (667)
T ss_pred CCEEEEEccCHHHHH-HHHHHHHCCCEEEEEeCCH--HHHHHHHcCCEEeC--CHHHHh----hcCCCEEEEcC
Confidence 457999999999997 5777788899999998652 22445567865422 111111 01479998864
No 211
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=75.10 E-value=10 Score=42.20 Aligned_cols=71 Identities=17% Similarity=0.186 Sum_probs=49.8
Q ss_pred CceEEEEeechhhHHHHHHHHHhCCCcEEEecCCCChhHHHHHHCCCeEEeCCCCCC--cCCCCCCCCCCEEEEcC
Q 009293 75 KGWIHFVGIGGSGLSALAKLALKQGFEVSGSDLVWSSYMEGLLEAGANLHIGHSVSN--IQGNDGSRFPNAVVASS 148 (538)
Q Consensus 75 ~~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~~~~~~~~~~Ga~~~~~~~~~~--~~~~~~~~~~d~vvvsp 148 (538)
+.+|.|+|.|.-|+. +++.|.++|++|...|.++ +..+++.+.|..++.|+..+. +.. .+-+.+|.+++..
T Consensus 417 ~~hiiI~G~G~~G~~-la~~L~~~g~~vvvId~d~-~~~~~~~~~g~~~i~GD~~~~~~L~~-a~i~~a~~viv~~ 489 (558)
T PRK10669 417 CNHALLVGYGRVGSL-LGEKLLAAGIPLVVIETSR-TRVDELRERGIRAVLGNAANEEIMQL-AHLDCARWLLLTI 489 (558)
T ss_pred CCCEEEECCChHHHH-HHHHHHHCCCCEEEEECCH-HHHHHHHHCCCeEEEcCCCCHHHHHh-cCccccCEEEEEc
Confidence 456889999999997 5888889999999999543 356778888999988743221 110 1123577676653
No 212
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=74.97 E-value=17 Score=36.99 Aligned_cols=125 Identities=16% Similarity=0.094 Sum_probs=68.3
Q ss_pred ceEEEEeechhhHHHHHHHHHhC----CCcEEEecCCCChhHHH-HHHCCCeEEeCCCCCCcCCCCCCCCCCEEEEcCCC
Q 009293 76 GWIHFVGIGGSGLSALAKLALKQ----GFEVSGSDLVWSSYMEG-LLEAGANLHIGHSVSNIQGNDGSRFPNAVVASSAI 150 (538)
Q Consensus 76 ~~v~vlG~G~sG~~~la~~l~~~----G~~v~g~D~~~~~~~~~-~~~~Ga~~~~~~~~~~~~~~~~~~~~d~vvvsp~i 150 (538)
++|.|||-+..---.||.+|..+ ++.|+....+-. .+++ ..+..+.+...-.+..+.. ++ -+...+|+..||
T Consensus 158 k~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T~-~l~~~~~~ADIvIsAvGkp~~i~~-~~-ik~gaiVIDvGi 234 (297)
T PRK14167 158 ADVVVVGRSDIVGKPMANLLIQKADGGNATVTVCHSRTD-DLAAKTRRADIVVAAAGVPELIDG-SM-LSEGATVIDVGI 234 (297)
T ss_pred CEEEEECCCcccHHHHHHHHhcCccCCCCEEEEeCCCCC-CHHHHHhhCCEEEEccCCcCccCH-HH-cCCCCEEEEccc
Confidence 66889998865555678888877 899997654322 2322 2232333322122222211 01 135788998888
Q ss_pred CCCCHHHHHHHHCCCCeeeHHHHHHHHhcCCcEEEEeCCCCchHHHHHHHHHHHHcC
Q 009293 151 PQDNVEILHAKSVGVPIYKRDYWLAKLTEKYNLIAVSGSHGKSTTASMLAYVLKAMG 207 (538)
Q Consensus 151 ~~~~~~l~~a~~~gi~vi~~~~~l~~~~~~~~vI~VTGTnGKTTTt~ml~~iL~~~G 207 (538)
.+.... .+.|..+....+|-.-......+-=|-|--|.=||+.++.++++.+.
T Consensus 235 n~~~~~----~~~g~kl~GDVd~e~v~~~a~~iTPVPGGVGpvT~a~L~~N~~~a~~ 287 (297)
T PRK14167 235 NRVDAD----TEKGYELVGDVEFESAKEKASAITPVPGGVGPMTRAMLLYNTVKAAS 287 (297)
T ss_pred cccCcc----cccCCceeecCcHHHHHhhceEecCCCCCchHHHHHHHHHHHHHHHH
Confidence 652110 01122345544432211112223334477999999999999998763
No 213
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=74.91 E-value=4.4 Score=41.16 Aligned_cols=33 Identities=33% Similarity=0.385 Sum_probs=27.1
Q ss_pred CcEEEEe--CCCCchHHHHHHHHHHHHcCCCeEEE
Q 009293 181 YNLIAVS--GSHGKSTTASMLAYVLKAMGDDLTAI 213 (538)
Q Consensus 181 ~~vI~VT--GTnGKTTTt~ml~~iL~~~G~~v~~~ 213 (538)
+++|+|. |-.|||||+.-|+..|.+.|++|..+
T Consensus 4 ~~~iai~~KGGvGKTt~~~nLa~~la~~g~kVLli 38 (295)
T PRK13234 4 LRQIAFYGKGGIGKSTTSQNTLAALVEMGQKILIV 38 (295)
T ss_pred ceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEE
Confidence 4677776 56789999999999999999997543
No 214
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=74.84 E-value=13 Score=41.21 Aligned_cols=33 Identities=24% Similarity=0.268 Sum_probs=27.1
Q ss_pred CceEEEEeechhhHHHHHHHHHhCCCcEEEecCC
Q 009293 75 KGWIHFVGIGGSGLSALAKLALKQGFEVSGSDLV 108 (538)
Q Consensus 75 ~~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~ 108 (538)
.++++|+|.|+.|+++ +..|+..|++|...+..
T Consensus 379 ~k~vlIlGaGGagrAi-a~~L~~~G~~V~i~nR~ 411 (529)
T PLN02520 379 GKLFVVIGAGGAGKAL-AYGAKEKGARVVIANRT 411 (529)
T ss_pred CCEEEEECCcHHHHHH-HHHHHHCCCEEEEEcCC
Confidence 3578999999999976 66677899999988754
No 215
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=74.74 E-value=22 Score=35.91 Aligned_cols=121 Identities=19% Similarity=0.043 Sum_probs=67.7
Q ss_pred ceEEEEeechhhHHHHHHHHHhCCCcEEEecCCCChhHHH-HHHCCCeEEeCCCCCCcCCCCCCCCCCEEEEcCCCCCCC
Q 009293 76 GWIHFVGIGGSGLSALAKLALKQGFEVSGSDLVWSSYMEG-LLEAGANLHIGHSVSNIQGNDGSRFPNAVVASSAIPQDN 154 (538)
Q Consensus 76 ~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~~~~~~-~~~~Ga~~~~~~~~~~~~~~~~~~~~d~vvvsp~i~~~~ 154 (538)
+++.|+|-+..--..+|.+|..+|+.|+....+-. .+++ ..+..+.+...-.+..+.. ++- +...+|+..|+.+..
T Consensus 156 k~vvViGrS~iVGkPla~lL~~~~aTVtichs~T~-~l~~~~~~ADIvIsAvGkp~~i~~-~~v-k~GavVIDVGin~~~ 232 (287)
T PRK14173 156 KEVVVVGRSNIVGKPLAALLLREDATVTLAHSKTQ-DLPAVTRRADVLVVAVGRPHLITP-EMV-RPGAVVVDVGINRVG 232 (287)
T ss_pred CEEEEECCCCccHHHHHHHHHHCCCEEEEeCCCCC-CHHHHHhhCCEEEEecCCcCccCH-HHc-CCCCEEEEccCcccc
Confidence 67889998866566689999999999997654322 2333 2333333322222221110 111 356788888887521
Q ss_pred HHHHHHHHCCC-CeeeHHHHHHHHhcCCcEEEEeCCCCchHHHHHHHHHHHHc
Q 009293 155 VEILHAKSVGV-PIYKRDYWLAKLTEKYNLIAVSGSHGKSTTASMLAYVLKAM 206 (538)
Q Consensus 155 ~~l~~a~~~gi-~vi~~~~~l~~~~~~~~vI~VTGTnGKTTTt~ml~~iL~~~ 206 (538)
+ +.|. .+....+ ..-......+-=|-|--|.-||+.++.+++..+
T Consensus 233 ~------~~gk~~l~GDVd-~~v~~~a~~iTPVPGGVGp~T~a~L~~N~~~a~ 278 (287)
T PRK14173 233 G------NGGRDILTGDVH-PEVAEVAGALTPVPGGVGPMTVAMLMANTVIAA 278 (287)
T ss_pred C------CCCceeeecccc-HhHHhhCcEEecCCCChhHHHHHHHHHHHHHHH
Confidence 1 0111 1333333 111111223444557889999999999999875
No 216
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=74.74 E-value=5.3 Score=40.92 Aligned_cols=65 Identities=22% Similarity=0.279 Sum_probs=47.6
Q ss_pred ceEEEEeechhhHHHHHHHHHhCCCcEEEecCCCChhHHHHHHCCCeEEeC-CCCCCcCCCCCCCCCCEEEEcCCC
Q 009293 76 GWIHFVGIGGSGLSALAKLALKQGFEVSGSDLVWSSYMEGLLEAGANLHIG-HSVSNIQGNDGSRFPNAVVASSAI 150 (538)
Q Consensus 76 ~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~~~~~~~~~~Ga~~~~~-~~~~~~~~~~~~~~~d~vvvsp~i 150 (538)
.+|.|||.|.-|+- +|..|-..|+.+..||... |-..+...|+..+.. ++ +. ...+|+|+++..+
T Consensus 53 l~IaIIGfGnmGqf-lAetli~aGh~li~hsRsd--yssaa~~yg~~~ft~lhd---lc----erhpDvvLlctsi 118 (480)
T KOG2380|consen 53 LVIAIIGFGNMGQF-LAETLIDAGHGLICHSRSD--YSSAAEKYGSAKFTLLHD---LC----ERHPDVVLLCTSI 118 (480)
T ss_pred eEEEEEecCcHHHH-HHHHHHhcCceeEecCcch--hHHHHHHhcccccccHHH---HH----hcCCCEEEEEehh
Confidence 56899999999996 6888899999999999543 656666667765433 33 11 2368999998764
No 217
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=74.67 E-value=6.8 Score=38.90 Aligned_cols=34 Identities=26% Similarity=0.468 Sum_probs=26.7
Q ss_pred CCcEEEEeCC--CCchHHHHHHHHHHHHcCCCeEEE
Q 009293 180 KYNLIAVSGS--HGKSTTASMLAYVLKAMGDDLTAI 213 (538)
Q Consensus 180 ~~~vI~VTGT--nGKTTTt~ml~~iL~~~G~~v~~~ 213 (538)
+..+|||||+ .||||.+.-+...|++.|++|+.+
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVl 63 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVL 63 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEE
T ss_pred CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEE
Confidence 5679999997 579999999999999999998654
No 218
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=74.63 E-value=4.3 Score=37.95 Aligned_cols=29 Identities=28% Similarity=0.421 Sum_probs=24.2
Q ss_pred EEEEeCC--CCchHHHHHHHHHHHHcCCCeE
Q 009293 183 LIAVSGS--HGKSTTASMLAYVLKAMGDDLT 211 (538)
Q Consensus 183 vI~VTGT--nGKTTTt~ml~~iL~~~G~~v~ 211 (538)
+|+|+|. .||||.+..|...|+..|.++.
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~ 31 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPV 31 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHcCCCEE
Confidence 4788884 6899999999999998877643
No 219
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=74.57 E-value=3.4 Score=40.67 Aligned_cols=31 Identities=32% Similarity=0.596 Sum_probs=25.6
Q ss_pred EEEEeCCCCchHHHHHHHHHHHHcCCCeEEE
Q 009293 183 LIAVSGSHGKSTTASMLAYVLKAMGDDLTAI 213 (538)
Q Consensus 183 vI~VTGTnGKTTTt~ml~~iL~~~G~~v~~~ 213 (538)
++++.|=.||||++.=++..|...|++|..+
T Consensus 6 i~s~kGGvG~TTltAnLA~aL~~~G~~VlaI 36 (243)
T PF06564_consen 6 IVSPKGGVGKTTLTANLAWALARLGESVLAI 36 (243)
T ss_pred EecCCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 4455567789999999999999999987654
No 220
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=74.51 E-value=4.2 Score=40.59 Aligned_cols=31 Identities=39% Similarity=0.522 Sum_probs=25.8
Q ss_pred EEEEe--CCCCchHHHHHHHHHHHHcCCCeEEE
Q 009293 183 LIAVS--GSHGKSTTASMLAYVLKAMGDDLTAI 213 (538)
Q Consensus 183 vI~VT--GTnGKTTTt~ml~~iL~~~G~~v~~~ 213 (538)
+|+|. |=.|||||+.-|+..|...|++|..+
T Consensus 2 ~ia~~gKGGVGKTT~a~nLA~~La~~G~~Vlli 34 (275)
T TIGR01287 2 QIAIYGKGGIGKSTTTQNIAAALAEMGKKVMIV 34 (275)
T ss_pred eeEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEE
Confidence 56666 57789999999999999999987544
No 221
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=74.47 E-value=4.3 Score=37.33 Aligned_cols=36 Identities=22% Similarity=0.287 Sum_probs=30.8
Q ss_pred cEEEEeCC--CCchHHHHHHHHHHHHcCCCeEEEeCCC
Q 009293 182 NLIAVSGS--HGKSTTASMLAYVLKAMGDDLTAIVGAH 217 (538)
Q Consensus 182 ~vI~VTGT--nGKTTTt~ml~~iL~~~G~~v~~~~g~~ 217 (538)
--|+|||- .||||.+.-++..|+..|++++++..+.
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~E 43 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPE 43 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeee
Confidence 47999995 6799999999999999999988776443
No 222
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=74.25 E-value=25 Score=33.59 Aligned_cols=21 Identities=33% Similarity=0.435 Sum_probs=16.1
Q ss_pred hhhcCCCceEEEEeechhhHH
Q 009293 69 VDFKNRKGWIHFVGIGGSGLS 89 (538)
Q Consensus 69 ~~~~~~~~~v~vlG~G~sG~~ 89 (538)
..+....++|.|.|.|+||.-
T Consensus 33 ~~i~~~~gkv~V~G~GkSG~I 53 (202)
T COG0794 33 ELILECKGKVFVTGVGKSGLI 53 (202)
T ss_pred HHHHhcCCcEEEEcCChhHHH
Confidence 334455788999999999974
No 223
>PRK11670 antiporter inner membrane protein; Provisional
Probab=74.19 E-value=4.6 Score=42.44 Aligned_cols=33 Identities=48% Similarity=0.573 Sum_probs=29.0
Q ss_pred CcEEEEe---CCCCchHHHHHHHHHHHHcCCCeEEE
Q 009293 181 YNLIAVS---GSHGKSTTASMLAYVLKAMGDDLTAI 213 (538)
Q Consensus 181 ~~vI~VT---GTnGKTTTt~ml~~iL~~~G~~v~~~ 213 (538)
.++|+|+ |-.|||||+.-|+..|.+.|++|..+
T Consensus 107 ~~vIaV~S~KGGVGKTT~avNLA~aLA~~G~rVlLI 142 (369)
T PRK11670 107 KNIIAVSSGKGGVGKSSTAVNLALALAAEGAKVGIL 142 (369)
T ss_pred CEEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 4799998 67899999999999999999997654
No 224
>PRK06545 prephenate dehydrogenase; Validated
Probab=73.84 E-value=7.3 Score=40.76 Aligned_cols=34 Identities=29% Similarity=0.092 Sum_probs=28.0
Q ss_pred ceEEEEeechhhHHHHHHHHHhCCCcEEEecCCCC
Q 009293 76 GWIHFVGIGGSGLSALAKLALKQGFEVSGSDLVWS 110 (538)
Q Consensus 76 ~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~ 110 (538)
++|.|||.|..|.+ +|..|...|+.+.++|.+..
T Consensus 1 ~~I~iIG~GliG~s-iA~~L~~~G~~v~i~~~~~~ 34 (359)
T PRK06545 1 RTVLIVGLGLIGGS-LALAIKAAGPDVFIIGYDPS 34 (359)
T ss_pred CeEEEEEeCHHHHH-HHHHHHhcCCCeEEEEeCCC
Confidence 35899999999997 57888889999998885543
No 225
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=73.44 E-value=5.2 Score=40.21 Aligned_cols=32 Identities=22% Similarity=0.416 Sum_probs=27.6
Q ss_pred CcEEEEeC--CCCchHHHHHHHHHHHHcCCCeEEE
Q 009293 181 YNLIAVSG--SHGKSTTASMLAYVLKAMGDDLTAI 213 (538)
Q Consensus 181 ~~vI~VTG--TnGKTTTt~ml~~iL~~~G~~v~~~ 213 (538)
+++|+|+| -.||||.+.-|...|++.| +|+.+
T Consensus 1 M~~i~i~G~~gSGKTTLi~~Li~~L~~~G-~V~~I 34 (274)
T PRK14493 1 MKVLSIVGYKATGKTTLVERLVDRLSGRG-RVGTV 34 (274)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhCC-CEEEE
Confidence 36899999 8899999999999999999 76543
No 226
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=73.43 E-value=5.9 Score=36.35 Aligned_cols=33 Identities=30% Similarity=0.372 Sum_probs=27.8
Q ss_pred CcEEEEeC--CCCchHHHHHHHHHHHHcCCCeEEE
Q 009293 181 YNLIAVSG--SHGKSTTASMLAYVLKAMGDDLTAI 213 (538)
Q Consensus 181 ~~vI~VTG--TnGKTTTt~ml~~iL~~~G~~v~~~ 213 (538)
+++|+|+| -.||||.+..+...|+..|++++.+
T Consensus 1 m~vi~i~G~~gsGKTTli~~L~~~l~~~g~~V~~i 35 (159)
T cd03116 1 MKVIGFVGYSGSGKTTLLEKLIPALSARGLRVAVI 35 (159)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEE
Confidence 36899999 6789999999999999999886543
No 227
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=73.42 E-value=5.4 Score=41.25 Aligned_cols=34 Identities=35% Similarity=0.520 Sum_probs=28.9
Q ss_pred CCcEEEEeC--CCCchHHHHHHHHHHHHcCCCeEEE
Q 009293 180 KYNLIAVSG--SHGKSTTASMLAYVLKAMGDDLTAI 213 (538)
Q Consensus 180 ~~~vI~VTG--TnGKTTTt~ml~~iL~~~G~~v~~~ 213 (538)
+.++|.|+| .-||||++.-++..|.+.|++|..+
T Consensus 30 ~~~ii~v~gkgG~GKSt~a~nLa~~la~~g~rVlli 65 (329)
T cd02033 30 KTQIIAIYGKGGIGKSFTLANLSYMMAQQGKRVLLI 65 (329)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 467888885 7899999999999999999997544
No 228
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=73.27 E-value=15 Score=38.34 Aligned_cols=124 Identities=18% Similarity=0.070 Sum_probs=69.7
Q ss_pred ceEEEEeechhhHHHHHHHHHhCCCcEEEecCCCChhHHH-HHHCCCeEEeCCCCCCcCCCCCCCCCCEEEEcCCCCCC-
Q 009293 76 GWIHFVGIGGSGLSALAKLALKQGFEVSGSDLVWSSYMEG-LLEAGANLHIGHSVSNIQGNDGSRFPNAVVASSAIPQD- 153 (538)
Q Consensus 76 ~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~~~~~~-~~~~Ga~~~~~~~~~~~~~~~~~~~~d~vvvsp~i~~~- 153 (538)
++|.|||-+..---.+|.+|..+|+.|+....+-. .+++ ..+..+.+.-.-.+..+.. ++ -++..+|+..||...
T Consensus 232 K~vvVIGRS~iVGkPLa~LL~~~~ATVTicHs~T~-nl~~~~r~ADIVIsAvGkp~~i~~-d~-vK~GAvVIDVGIn~~~ 308 (364)
T PLN02616 232 KRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTK-NPEEITREADIIISAVGQPNMVRG-SW-IKPGAVVIDVGINPVE 308 (364)
T ss_pred CEEEEECCCccccHHHHHHHHHCCCeEEEeCCCCC-CHHHHHhhCCEEEEcCCCcCcCCH-HH-cCCCCEEEeccccccc
Confidence 56889988865555679999999999998765432 2332 2333333322222221211 01 136789999998752
Q ss_pred CHHHHHHHHCCCCeeeHHHHHHHHhcCCcEEEEeCCCCchHHHHHHHHHHHHc
Q 009293 154 NVEILHAKSVGVPIYKRDYWLAKLTEKYNLIAVSGSHGKSTTASMLAYVLKAM 206 (538)
Q Consensus 154 ~~~l~~a~~~gi~vi~~~~~l~~~~~~~~vI~VTGTnGKTTTt~ml~~iL~~~ 206 (538)
.. ..+.|..+....+|-.-......+==|-|--|-=||+.++.+.++++
T Consensus 309 ~~----~~~~g~klvGDVdfe~v~~~as~ITPVPGGVGpmTva~Ll~N~~~aa 357 (364)
T PLN02616 309 DA----SSPRGYRLVGDVCYEEACKVASAVTPVPGGVGPMTIAMLLSNTLTSA 357 (364)
T ss_pred cc----cccCCCeEEecCcHHHHHhhccccCCCCCchHHHHHHHHHHHHHHHH
Confidence 11 01112235555443221111112233448999999999999999875
No 229
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=73.12 E-value=3.4 Score=44.21 Aligned_cols=30 Identities=30% Similarity=0.336 Sum_probs=25.9
Q ss_pred eEEEEeechhhHHHHHHHHHhCC--CcEEEecC
Q 009293 77 WIHFVGIGGSGLSALAKLALKQG--FEVSGSDL 107 (538)
Q Consensus 77 ~v~vlG~G~sG~~~la~~l~~~G--~~v~g~D~ 107 (538)
+|+|||.|.+|.+| |..|++.| ++|.+.+.
T Consensus 2 ~v~IVGaGiaGL~a-A~~L~~~G~~~~V~vlEa 33 (451)
T PRK11883 2 KVAIIGGGITGLSA-AYRLHKKGPDADITLLEA 33 (451)
T ss_pred eEEEECCCHHHHHH-HHHHHHhCCCCCEEEEEc
Confidence 58899999999998 78888877 88998873
No 230
>PRK05439 pantothenate kinase; Provisional
Probab=73.08 E-value=5.6 Score=40.75 Aligned_cols=26 Identities=42% Similarity=0.514 Sum_probs=22.2
Q ss_pred CcEEEEeCC--CCchHHHHHHHHHHHHc
Q 009293 181 YNLIAVSGS--HGKSTTASMLAYVLKAM 206 (538)
Q Consensus 181 ~~vI~VTGT--nGKTTTt~ml~~iL~~~ 206 (538)
.-+|||||+ .||||++..|..+|...
T Consensus 86 ~~iIgIaG~~gsGKSTla~~L~~~l~~~ 113 (311)
T PRK05439 86 PFIIGIAGSVAVGKSTTARLLQALLSRW 113 (311)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 458999996 57999999999999764
No 231
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=72.91 E-value=4.6 Score=39.15 Aligned_cols=30 Identities=27% Similarity=0.271 Sum_probs=23.8
Q ss_pred ceEEEEeechhhHHHHHHHHHhCCCcEEEecCC
Q 009293 76 GWIHFVGIGGSGLSALAKLALKQGFEVSGSDLV 108 (538)
Q Consensus 76 ~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~ 108 (538)
.+|+++| ||.|+- +.+|+.+|++|+|.|..
T Consensus 39 ~rvL~~g-CG~G~d--a~~LA~~G~~V~avD~s 68 (218)
T PRK13255 39 SRVLVPL-CGKSLD--MLWLAEQGHEVLGVELS 68 (218)
T ss_pred CeEEEeC-CCChHh--HHHHHhCCCeEEEEccC
Confidence 5688888 456776 47889999999999943
No 232
>PLN02858 fructose-bisphosphate aldolase
Probab=72.64 E-value=15 Score=45.31 Aligned_cols=113 Identities=19% Similarity=0.188 Sum_probs=67.8
Q ss_pred CceEEEEeechhhHHHHHHHHHhCCCcEEEecCCCChhHHHHHHCCCeEEeCCCCCCcCCCCCCCCCCEEEEcCCCCCCC
Q 009293 75 KGWIHFVGIGGSGLSALAKLALKQGFEVSGSDLVWSSYMEGLLEAGANLHIGHSVSNIQGNDGSRFPNAVVASSAIPQDN 154 (538)
Q Consensus 75 ~~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~d~vvvsp~i~~~~ 154 (538)
.++|.|||+|.-|.. +|.-|...|+.|.++|.+. +-.+.+.+.|+...- .+.+.. ..+|+|+.+. ++.
T Consensus 4 ~~~IGfIGLG~MG~~-mA~~L~~~G~~v~v~dr~~-~~~~~l~~~Ga~~~~--s~~e~a-----~~advVi~~l---~~~ 71 (1378)
T PLN02858 4 AGVVGFVGLDSLSFE-LASSLLRSGFKVQAFEIST-PLMEKFCELGGHRCD--SPAEAA-----KDAAALVVVL---SHP 71 (1378)
T ss_pred CCeEEEEchhHHHHH-HHHHHHHCCCeEEEEcCCH-HHHHHHHHcCCeecC--CHHHHH-----hcCCEEEEEc---CCh
Confidence 356999999998876 4566677999999999643 234567778876532 222221 1478888864 222
Q ss_pred HHHHHHHHCCCCeeeHHHHHHHHhcCCcEEEEeCCCCchHHHHHHHHHHHHcC
Q 009293 155 VEILHAKSVGVPIYKRDYWLAKLTEKYNLIAVSGSHGKSTTASMLAYVLKAMG 207 (538)
Q Consensus 155 ~~l~~a~~~gi~vi~~~~~l~~~~~~~~vI~VTGTnGKTTTt~ml~~iL~~~G 207 (538)
..+.... .....++... ....+|..++|..-.++..+ ++.+++.|
T Consensus 72 ~~v~~V~------~g~~g~~~~l-~~g~iivd~STi~p~~~~~l-a~~l~~~g 116 (1378)
T PLN02858 72 DQVDDVF------FGDEGAAKGL-QKGAVILIRSTILPLQLQKL-EKKLTERK 116 (1378)
T ss_pred HHHHHHH------hchhhHHhcC-CCcCEEEECCCCCHHHHHHH-HHHHHhcC
Confidence 3333221 0001122221 23468888888888766665 45566667
No 233
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=72.56 E-value=6.7 Score=41.81 Aligned_cols=64 Identities=14% Similarity=0.064 Sum_probs=44.9
Q ss_pred ceEEEEeechhhHHHHHHHHHhCCCcEEEecCCCChhHHHHHHCCCeEEeCCCCCCcCCCCCCCCCCEEEEcCC
Q 009293 76 GWIHFVGIGGSGLSALAKLALKQGFEVSGSDLVWSSYMEGLLEAGANLHIGHSVSNIQGNDGSRFPNAVVASSA 149 (538)
Q Consensus 76 ~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~d~vvvsp~ 149 (538)
++|+|+|.|..|+.+ +..++..|.+|.+.|..+. ....+.+.|+...... +.+ ...|+||..+|
T Consensus 203 ktVvViG~G~IG~~v-a~~ak~~Ga~ViV~d~d~~-R~~~A~~~G~~~~~~~--e~v------~~aDVVI~atG 266 (413)
T cd00401 203 KVAVVAGYGDVGKGC-AQSLRGQGARVIVTEVDPI-CALQAAMEGYEVMTME--EAV------KEGDIFVTTTG 266 (413)
T ss_pred CEEEEECCCHHHHHH-HHHHHHCCCEEEEEECChh-hHHHHHhcCCEEccHH--HHH------cCCCEEEECCC
Confidence 568999999999986 6777889999999986433 2455667788553211 111 24788888765
No 234
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=72.52 E-value=3.9 Score=38.01 Aligned_cols=29 Identities=34% Similarity=0.400 Sum_probs=23.4
Q ss_pred EEeCCCCchHHHHHHHHHHHHcCCCeEEE
Q 009293 185 AVSGSHGKSTTASMLAYVLKAMGDDLTAI 213 (538)
Q Consensus 185 ~VTGTnGKTTTt~ml~~iL~~~G~~v~~~ 213 (538)
+.-|=.||||++..++..|...|++|..+
T Consensus 5 ~~kGG~GKTt~a~~la~~la~~g~~Vlli 33 (195)
T PF01656_consen 5 SGKGGVGKTTIAANLAQALARKGKKVLLI 33 (195)
T ss_dssp ESSTTSSHHHHHHHHHHHHHHTTS-EEEE
T ss_pred cCCCCccHHHHHHHHHhcccccccccccc
Confidence 33467899999999999999999997654
No 235
>PLN02852 ferredoxin-NADP+ reductase
Probab=72.46 E-value=4.1 Score=44.53 Aligned_cols=33 Identities=27% Similarity=0.305 Sum_probs=27.4
Q ss_pred CceEEEEeechhhHHHHHHHHHh--CCCcEEEecCC
Q 009293 75 KGWIHFVGIGGSGLSALAKLALK--QGFEVSGSDLV 108 (538)
Q Consensus 75 ~~~v~vlG~G~sG~~~la~~l~~--~G~~v~g~D~~ 108 (538)
.++|+|||.|.+|+.| |..|+. +|++|+..|..
T Consensus 26 ~~~VaIVGaGPAGl~A-A~~L~~~~~g~~Vtv~E~~ 60 (491)
T PLN02852 26 PLHVCVVGSGPAGFYT-ADKLLKAHDGARVDIIERL 60 (491)
T ss_pred CCcEEEECccHHHHHH-HHHHHhhCCCCeEEEEecC
Confidence 4569999999999998 666654 79999999854
No 236
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=72.40 E-value=3.7 Score=44.56 Aligned_cols=33 Identities=24% Similarity=0.349 Sum_probs=27.8
Q ss_pred CceEEEEeechhhHHHHHHHHHhCCCcEEEecCC
Q 009293 75 KGWIHFVGIGGSGLSALAKLALKQGFEVSGSDLV 108 (538)
Q Consensus 75 ~~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~ 108 (538)
+++|+|||.|.+|++| |+.|+..|.+|.+.+..
T Consensus 10 ~~~VaIIGAG~aGL~a-A~~l~~~G~~v~vfE~~ 42 (461)
T PLN02172 10 SQHVAVIGAGAAGLVA-ARELRREGHTVVVFERE 42 (461)
T ss_pred CCCEEEECCcHHHHHH-HHHHHhcCCeEEEEecC
Confidence 3569999999999997 67777899999998843
No 237
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=72.26 E-value=19 Score=39.50 Aligned_cols=33 Identities=24% Similarity=0.028 Sum_probs=26.7
Q ss_pred ceEEEEeechhhHHHHHHHHHhCCCcEEEecCCC
Q 009293 76 GWIHFVGIGGSGLSALAKLALKQGFEVSGSDLVW 109 (538)
Q Consensus 76 ~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~ 109 (538)
++|.|||.|.-|.+ +|..|+..|++|.++|.+.
T Consensus 5 ~kIavIG~G~MG~~-iA~~la~~G~~V~v~D~~~ 37 (495)
T PRK07531 5 MKAACIGGGVIGGG-WAARFLLAGIDVAVFDPHP 37 (495)
T ss_pred CEEEEECcCHHHHH-HHHHHHhCCCeEEEEeCCH
Confidence 46999999988876 4566677899999999754
No 238
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=72.22 E-value=5.2 Score=36.71 Aligned_cols=26 Identities=38% Similarity=0.486 Sum_probs=22.7
Q ss_pred CCCCchHHHHHHHHHHHHcCCCeEEE
Q 009293 188 GSHGKSTTASMLAYVLKAMGDDLTAI 213 (538)
Q Consensus 188 GTnGKTTTt~ml~~iL~~~G~~v~~~ 213 (538)
|-.||||++.-|+..|.+.|++|..+
T Consensus 9 gG~GKTt~a~~LA~~la~~g~~vllv 34 (169)
T cd02037 9 GGVGKSTVAVNLALALAKLGYKVGLL 34 (169)
T ss_pred CcCChhHHHHHHHHHHHHcCCcEEEE
Confidence 67799999999999999999987543
No 239
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=71.82 E-value=13 Score=38.02 Aligned_cols=35 Identities=29% Similarity=0.274 Sum_probs=28.6
Q ss_pred cCCcEEEEeCC---CCchHHHHHHHHHHHHcCCCeEEE
Q 009293 179 EKYNLIAVSGS---HGKSTTASMLAYVLKAMGDDLTAI 213 (538)
Q Consensus 179 ~~~~vI~VTGT---nGKTTTt~ml~~iL~~~G~~v~~~ 213 (538)
...++|+|+|. .||||++.-++..|...|++|...
T Consensus 91 ~~~~vIav~~~KGGvGkTT~a~nLA~~la~~g~~VlLv 128 (322)
T TIGR03815 91 ARGVVVAVIGGRGGAGASTLAAALALAAARHGLRTLLV 128 (322)
T ss_pred CCceEEEEEcCCCCCcHHHHHHHHHHHHHhcCCCEEEE
Confidence 35679999865 579999999999999999886543
No 240
>PRK12374 putative dithiobiotin synthetase; Provisional
Probab=71.74 E-value=5.8 Score=38.65 Aligned_cols=31 Identities=19% Similarity=0.355 Sum_probs=26.1
Q ss_pred EEEEeCC---CCchHHHHHHHHHHHHcCCCeEEE
Q 009293 183 LIAVSGS---HGKSTTASMLAYVLKAMGDDLTAI 213 (538)
Q Consensus 183 vI~VTGT---nGKTTTt~ml~~iL~~~G~~v~~~ 213 (538)
.+-|||| .|||+++..|.+.|++.|++++.+
T Consensus 4 ~ifIt~t~t~vGKT~vt~~L~~~l~~~g~~v~~~ 37 (231)
T PRK12374 4 RFFITGTDTSVGKTVVSRALLQALASQGKTVAGY 37 (231)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 4667766 799999999999999999987543
No 241
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=71.58 E-value=4.9 Score=37.65 Aligned_cols=31 Identities=29% Similarity=0.430 Sum_probs=24.7
Q ss_pred eEEEEeechhhHHHHHHHHHhCCCcEEEecCC
Q 009293 77 WIHFVGIGGSGLSALAKLALKQGFEVSGSDLV 108 (538)
Q Consensus 77 ~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~ 108 (538)
+|.|||.|..|.+ +|..++..|++|...|.+
T Consensus 1 ~V~ViGaG~mG~~-iA~~~a~~G~~V~l~d~~ 31 (180)
T PF02737_consen 1 KVAVIGAGTMGRG-IAALFARAGYEVTLYDRS 31 (180)
T ss_dssp EEEEES-SHHHHH-HHHHHHHTTSEEEEE-SS
T ss_pred CEEEEcCCHHHHH-HHHHHHhCCCcEEEEECC
Confidence 5889999999987 577777789999999965
No 242
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=71.48 E-value=29 Score=35.24 Aligned_cols=42 Identities=19% Similarity=0.130 Sum_probs=30.8
Q ss_pred eEEEEeechhhHHHHHHHHHhCCCcEEEecCCCChhHHHHHHCC
Q 009293 77 WIHFVGIGGSGLSALAKLALKQGFEVSGSDLVWSSYMEGLLEAG 120 (538)
Q Consensus 77 ~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~~~~~~~~~~G 120 (538)
+|.|+|.|.-|.+ +|..|+..|++|.++|... +.++.+.+.|
T Consensus 3 kI~iiG~G~mG~~-~a~~L~~~g~~V~~~~r~~-~~~~~~~~~~ 44 (325)
T PRK00094 3 KIAVLGAGSWGTA-LAIVLARNGHDVTLWARDP-EQAAEINADR 44 (325)
T ss_pred EEEEECCCHHHHH-HHHHHHhCCCEEEEEECCH-HHHHHHHHcC
Confidence 5899999999986 4677778999999998532 3344455543
No 243
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=71.42 E-value=5.4 Score=36.38 Aligned_cols=31 Identities=32% Similarity=0.474 Sum_probs=25.4
Q ss_pred EEEEeCC--CCchHHHHHHHHHHHHcCCCeEEE
Q 009293 183 LIAVSGS--HGKSTTASMLAYVLKAMGDDLTAI 213 (538)
Q Consensus 183 vI~VTGT--nGKTTTt~ml~~iL~~~G~~v~~~ 213 (538)
+|+|+|. .||||++..+...|+..|++++.+
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~G~~V~vi 33 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKARGYRVATI 33 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 4677773 589999999999999999987654
No 244
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=71.38 E-value=17 Score=35.30 Aligned_cols=92 Identities=20% Similarity=0.095 Sum_probs=51.5
Q ss_pred hhcCCCceEEEEeechhhHHHHHHHHHhCCCcEEEecCCCChhHHHHHHCC-CeEEeC-CCCCCcCCCCCCCCCCEEEEc
Q 009293 70 DFKNRKGWIHFVGIGGSGLSALAKLALKQGFEVSGSDLVWSSYMEGLLEAG-ANLHIG-HSVSNIQGNDGSRFPNAVVAS 147 (538)
Q Consensus 70 ~~~~~~~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~~~~~~~~~~G-a~~~~~-~~~~~~~~~~~~~~~d~vvvs 147 (538)
.+..+.++|+|||.|..+..=+ ..|..-|++|++.--...+.+..+.+.| +.+... ..+.++ ..+++|+..
T Consensus 20 ~l~~~~~~VLVVGGG~VA~RK~-~~Ll~~gA~VtVVap~i~~el~~l~~~~~i~~~~r~~~~~dl------~g~~LViaA 92 (223)
T PRK05562 20 SLLSNKIKVLIIGGGKAAFIKG-KTFLKKGCYVYILSKKFSKEFLDLKKYGNLKLIKGNYDKEFI------KDKHLIVIA 92 (223)
T ss_pred EEECCCCEEEEECCCHHHHHHH-HHHHhCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChHHh------CCCcEEEEC
Confidence 3445557899999998886654 4455689999988644333444555544 333322 122233 257888887
Q ss_pred CCCCCCCHHHH-HHHHCCCCee
Q 009293 148 SAIPQDNVEIL-HAKSVGVPIY 168 (538)
Q Consensus 148 p~i~~~~~~l~-~a~~~gi~vi 168 (538)
...+.-+..+. .|++.++.+-
T Consensus 93 TdD~~vN~~I~~~a~~~~~lvn 114 (223)
T PRK05562 93 TDDEKLNNKIRKHCDRLYKLYI 114 (223)
T ss_pred CCCHHHHHHHHHHHHHcCCeEE
Confidence 64333333322 2334455443
No 245
>PRK13984 putative oxidoreductase; Provisional
Probab=71.25 E-value=6.9 Score=43.97 Aligned_cols=75 Identities=24% Similarity=0.298 Sum_probs=47.5
Q ss_pred CceEEEEeechhhHHHHHHHHHhCCCcEEEecCCCC--------------------hhHHHHHHCCCeEEeCCCC-CCcC
Q 009293 75 KGWIHFVGIGGSGLSALAKLALKQGFEVSGSDLVWS--------------------SYMEGLLEAGANLHIGHSV-SNIQ 133 (538)
Q Consensus 75 ~~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~--------------------~~~~~~~~~Ga~~~~~~~~-~~~~ 133 (538)
.++|+|||.|..|+++ |..|+.+|++|...|.... ...+.+.+.|+.+..+... .++.
T Consensus 283 ~~~v~IIGaG~aGl~a-A~~L~~~G~~v~vie~~~~~gG~~~~~i~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~~~~ 361 (604)
T PRK13984 283 NKKVAIVGSGPAGLSA-AYFLATMGYEVTVYESLSKPGGVMRYGIPSYRLPDEALDKDIAFIEALGVKIHLNTRVGKDIP 361 (604)
T ss_pred CCeEEEECCCHHHHHH-HHHHHHCCCeEEEEecCCCCCceEeecCCcccCCHHHHHHHHHHHHHCCcEEECCCEeCCcCC
Confidence 4568999999999997 7788889999998864320 0124456678887665321 1110
Q ss_pred CCCCCCCCCEEEEcCCC
Q 009293 134 GNDGSRFPNAVVASSAI 150 (538)
Q Consensus 134 ~~~~~~~~d~vvvsp~i 150 (538)
.......+|.||+..|.
T Consensus 362 ~~~~~~~yD~vilAtGa 378 (604)
T PRK13984 362 LEELREKHDAVFLSTGF 378 (604)
T ss_pred HHHHHhcCCEEEEEcCc
Confidence 00001247888888774
No 246
>PRK06475 salicylate hydroxylase; Provisional
Probab=71.20 E-value=4 Score=43.14 Aligned_cols=32 Identities=31% Similarity=0.324 Sum_probs=27.9
Q ss_pred ceEEEEeechhhHHHHHHHHHhCCCcEEEecCC
Q 009293 76 GWIHFVGIGGSGLSALAKLALKQGFEVSGSDLV 108 (538)
Q Consensus 76 ~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~ 108 (538)
++|+|||.|.+|+++ |.+|+++|.+|...+..
T Consensus 3 ~~V~IvGgGiaGl~~-A~~L~~~G~~V~i~E~~ 34 (400)
T PRK06475 3 GSPLIAGAGVAGLSA-ALELAARGWAVTIIEKA 34 (400)
T ss_pred CcEEEECCCHHHHHH-HHHHHhCCCcEEEEecC
Confidence 468999999999975 88899999999999843
No 247
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=71.15 E-value=6.2 Score=38.47 Aligned_cols=31 Identities=29% Similarity=0.579 Sum_probs=25.5
Q ss_pred EEEEe---CCCCchHHHHHHHHHHHHcCCCeEEE
Q 009293 183 LIAVS---GSHGKSTTASMLAYVLKAMGDDLTAI 213 (538)
Q Consensus 183 vI~VT---GTnGKTTTt~ml~~iL~~~G~~v~~~ 213 (538)
+|+|+ |-.||||++.-++..|...|++|..+
T Consensus 2 ii~v~~~KGGvGKTt~a~~LA~~la~~g~~Vlli 35 (251)
T TIGR01969 2 IITIASGKGGTGKTTITANLGVALAKLGKKVLAL 35 (251)
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCeEEEE
Confidence 45555 67899999999999999999987544
No 248
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=71.08 E-value=4.5 Score=41.17 Aligned_cols=31 Identities=29% Similarity=0.368 Sum_probs=25.3
Q ss_pred eEEEEeechhhHHHHHHHHHhCCCcEEEecCC
Q 009293 77 WIHFVGIGGSGLSALAKLALKQGFEVSGSDLV 108 (538)
Q Consensus 77 ~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~ 108 (538)
+|+|||.|.+|..+ |..|+..|.+|...|..
T Consensus 3 dV~IvGaG~aGl~~-A~~L~~~G~~v~i~E~~ 33 (356)
T PF01494_consen 3 DVAIVGAGPAGLAA-ALALARAGIDVTIIERR 33 (356)
T ss_dssp EEEEE--SHHHHHH-HHHHHHTTCEEEEEESS
T ss_pred eEEEECCCHHHHHH-HHHHHhcccccccchhc
Confidence 48899999999975 89999999999999843
No 249
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=71.01 E-value=6.8 Score=40.32 Aligned_cols=32 Identities=41% Similarity=0.423 Sum_probs=26.2
Q ss_pred CCcEEEEeCCC--CchHHHHHHHHHHHHcCCCeE
Q 009293 180 KYNLIAVSGSH--GKSTTASMLAYVLKAMGDDLT 211 (538)
Q Consensus 180 ~~~vI~VTGTn--GKTTTt~ml~~iL~~~G~~v~ 211 (538)
...+|++.|-| |||||+..|+..|+..|.+|.
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~ 146 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVL 146 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEE
Confidence 34688888855 699999999999998887754
No 250
>PF13500 AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R_A 4A0H_B 4A0F_B 3FMI_C 3FPA_D 3FMF_C 3FGN_A ....
Probab=70.87 E-value=5.4 Score=37.70 Aligned_cols=31 Identities=26% Similarity=0.314 Sum_probs=26.3
Q ss_pred cEEEEeCC---CCchHHHHHHHHHHHHcCCCeEE
Q 009293 182 NLIAVSGS---HGKSTTASMLAYVLKAMGDDLTA 212 (538)
Q Consensus 182 ~vI~VTGT---nGKTTTt~ml~~iL~~~G~~v~~ 212 (538)
+.|-|||| .|||+++.-|.+.|++.|.+++.
T Consensus 1 r~i~I~~t~t~vGKT~vslgL~~~l~~~g~~v~~ 34 (199)
T PF13500_consen 1 RTIFITGTDTGVGKTVVSLGLARALRRRGIKVGY 34 (199)
T ss_dssp -EEEEEESSSSSSHHHHHHHHHHHHHHTTSEEEE
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHHHhCCCceEE
Confidence 35778888 59999999999999999998753
No 251
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=70.62 E-value=29 Score=35.33 Aligned_cols=125 Identities=13% Similarity=0.021 Sum_probs=67.5
Q ss_pred ceEEEEeechhhHHHHHHHHHhC----CCcEEEecCCCChhHHH-HHHCCCeEEeCCCCCCcCCCCCCCCCCEEEEcCCC
Q 009293 76 GWIHFVGIGGSGLSALAKLALKQ----GFEVSGSDLVWSSYMEG-LLEAGANLHIGHSVSNIQGNDGSRFPNAVVASSAI 150 (538)
Q Consensus 76 ~~v~vlG~G~sG~~~la~~l~~~----G~~v~g~D~~~~~~~~~-~~~~Ga~~~~~~~~~~~~~~~~~~~~d~vvvsp~i 150 (538)
++|.|+|-+..---.+|.+|..+ |+.|+....+-. .+++ ..+..+.+...-.+..+.. ++ -++..+|+..|+
T Consensus 162 k~vvViGrS~iVGkPla~lL~~~~~~~~atVtv~hs~T~-~l~~~~~~ADIvVsAvGkp~~i~~-~~-ik~gavVIDvGi 238 (297)
T PRK14168 162 AEVVVVGRSNIVGKPIANMMTQKGPGANATVTIVHTRSK-NLARHCQRADILIVAAGVPNLVKP-EW-IKPGATVIDVGV 238 (297)
T ss_pred CEEEEECCCCcccHHHHHHHHhcccCCCCEEEEecCCCc-CHHHHHhhCCEEEEecCCcCccCH-HH-cCCCCEEEecCC
Confidence 66889998866555678888888 789987754322 2332 2333333322122211111 01 035678999888
Q ss_pred CCCCHHHHHHHHCCCCeeeHHHHHHHHhcCCcEEEEeCCCCchHHHHHHHHHHHHc
Q 009293 151 PQDNVEILHAKSVGVPIYKRDYWLAKLTEKYNLIAVSGSHGKSTTASMLAYVLKAM 206 (538)
Q Consensus 151 ~~~~~~l~~a~~~gi~vi~~~~~l~~~~~~~~vI~VTGTnGKTTTt~ml~~iL~~~ 206 (538)
....... ...+..+.+..+|-.-......+-=|-|=-|.-||+.++.++++++
T Consensus 239 n~~~~~~---~~g~~~~~GDVdfe~v~~~a~~iTPVPGGVGp~T~a~L~~N~~~a~ 291 (297)
T PRK14168 239 NRVGTNE---STGKAILSGDVDFDAVKEIAGKITPVPGGVGPMTIAMLMRNTLKSA 291 (297)
T ss_pred CccCccc---cCCCcceeccccHHHHHhhccEecCCCCCchHHHHHHHHHHHHHHH
Confidence 6521000 0011124444443211111222333447799999999999999875
No 252
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=70.58 E-value=12 Score=41.25 Aligned_cols=34 Identities=24% Similarity=0.276 Sum_probs=27.5
Q ss_pred CceEEEEeechhhHHHHHHHHHhCCCcEEEecCCC
Q 009293 75 KGWIHFVGIGGSGLSALAKLALKQGFEVSGSDLVW 109 (538)
Q Consensus 75 ~~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~ 109 (538)
-++|.|||.|.-|.+ +|..++..|+.|.++|.+.
T Consensus 7 i~~V~VIGaG~MG~g-IA~~la~aG~~V~l~D~~~ 40 (507)
T PRK08268 7 IATVAVIGAGAMGAG-IAQVAAQAGHTVLLYDARA 40 (507)
T ss_pred CCEEEEECCCHHHHH-HHHHHHhCCCeEEEEeCCH
Confidence 356999999977765 4677788999999999764
No 253
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=70.54 E-value=18 Score=36.91 Aligned_cols=71 Identities=17% Similarity=0.187 Sum_probs=42.4
Q ss_pred ceEEEEeechhhHHHHHHHHHhCCC-cEEEecCCCChhHHH---HHHCC------CeEEeCCCCCCcCCCCCCCCCCEEE
Q 009293 76 GWIHFVGIGGSGLSALAKLALKQGF-EVSGSDLVWSSYMEG---LLEAG------ANLHIGHSVSNIQGNDGSRFPNAVV 145 (538)
Q Consensus 76 ~~v~vlG~G~sG~~~la~~l~~~G~-~v~g~D~~~~~~~~~---~~~~G------a~~~~~~~~~~~~~~~~~~~~d~vv 145 (538)
++|.|+|.|.-|... |..++.+|. +|...|.....-... +.+.+ ..+....+..++ +..|+||
T Consensus 2 ~KV~VIGaG~vG~~i-A~~la~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~~------~~aDiVI 74 (305)
T TIGR01763 2 KKISVIGAGFVGATT-AFRLAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYADT------ANSDIVV 74 (305)
T ss_pred CEEEEECcCHHHHHH-HHHHHHcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHHh------CCCCEEE
Confidence 468999999988875 666777775 799999753311101 11111 122222222222 2689999
Q ss_pred EcCCCCCC
Q 009293 146 ASSAIPQD 153 (538)
Q Consensus 146 vsp~i~~~ 153 (538)
+..|.|++
T Consensus 75 itag~p~~ 82 (305)
T TIGR01763 75 ITAGLPRK 82 (305)
T ss_pred EcCCCCCC
Confidence 99887754
No 254
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=70.32 E-value=8.3 Score=40.68 Aligned_cols=90 Identities=19% Similarity=0.111 Sum_probs=49.4
Q ss_pred ceEEEEeechhhHHHHHHHHHhCC-CcEEEecCCCChhHHHHHHC---CCeEEeC--CCCCCcCCCCCCCCCCEEEEcCC
Q 009293 76 GWIHFVGIGGSGLSALAKLALKQG-FEVSGSDLVWSSYMEGLLEA---GANLHIG--HSVSNIQGNDGSRFPNAVVASSA 149 (538)
Q Consensus 76 ~~v~vlG~G~sG~~~la~~l~~~G-~~v~g~D~~~~~~~~~~~~~---Ga~~~~~--~~~~~~~~~~~~~~~d~vvvsp~ 149 (538)
++|+|||.|+.|+.+ |..|+..| .+|++.|...+. .+++.+. .+..... .+.+.+. ...+++|+|+- -.
T Consensus 2 ~~ilviGaG~Vg~~v-a~~la~~~d~~V~iAdRs~~~-~~~i~~~~~~~v~~~~vD~~d~~al~--~li~~~d~VIn-~~ 76 (389)
T COG1748 2 MKILVIGAGGVGSVV-AHKLAQNGDGEVTIADRSKEK-CARIAELIGGKVEALQVDAADVDALV--ALIKDFDLVIN-AA 76 (389)
T ss_pred CcEEEECCchhHHHH-HHHHHhCCCceEEEEeCCHHH-HHHHHhhccccceeEEecccChHHHH--HHHhcCCEEEE-eC
Confidence 458999999999986 56667788 899999965332 2233233 2333322 2221110 00124565544 22
Q ss_pred CCCCCH-HHHHHHHCCCCeeeH
Q 009293 150 IPQDNV-EILHAKSVGVPIYKR 170 (538)
Q Consensus 150 i~~~~~-~l~~a~~~gi~vi~~ 170 (538)
-+.-+. .+++|.+.|+.++.-
T Consensus 77 p~~~~~~i~ka~i~~gv~yvDt 98 (389)
T COG1748 77 PPFVDLTILKACIKTGVDYVDT 98 (389)
T ss_pred CchhhHHHHHHHHHhCCCEEEc
Confidence 223333 455666788887653
No 255
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=69.70 E-value=16 Score=37.12 Aligned_cols=69 Identities=20% Similarity=0.238 Sum_probs=42.3
Q ss_pred EEEEeechhhHHHHHHHHHhCC--CcEEEecCCCChh---HHHHHHC-----CCeEEeCCCCCCcCCCCCCCCCCEEEEc
Q 009293 78 IHFVGIGGSGLSALAKLALKQG--FEVSGSDLVWSSY---MEGLLEA-----GANLHIGHSVSNIQGNDGSRFPNAVVAS 147 (538)
Q Consensus 78 v~vlG~G~sG~~~la~~l~~~G--~~v~g~D~~~~~~---~~~~~~~-----Ga~~~~~~~~~~~~~~~~~~~~d~vvvs 147 (538)
|.|||.|..|.+. |..|+.+| .++...|.+.+.- ..++... ...+..+.+.+++ +.+|+||+.
T Consensus 1 i~iiGaG~VG~~~-a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~~~~l------~~aDiVIit 73 (300)
T cd00300 1 ITIIGAGNVGAAV-AFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGDYADA------ADADIVVIT 73 (300)
T ss_pred CEEECCCHHHHHH-HHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCCHHHh------CCCCEEEEc
Confidence 4689999999875 56667778 6899999765421 1122111 1122222223333 368999999
Q ss_pred CCCCCC
Q 009293 148 SAIPQD 153 (538)
Q Consensus 148 p~i~~~ 153 (538)
.|.|+.
T Consensus 74 ag~p~~ 79 (300)
T cd00300 74 AGAPRK 79 (300)
T ss_pred CCCCCC
Confidence 988763
No 256
>PRK14495 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/unknown domain fusion protein; Provisional
Probab=69.63 E-value=6.4 Score=42.08 Aligned_cols=33 Identities=18% Similarity=0.320 Sum_probs=28.8
Q ss_pred CcEEEEeC--CCCchHHHHHHHHHHHHcCCCeEEE
Q 009293 181 YNLIAVSG--SHGKSTTASMLAYVLKAMGDDLTAI 213 (538)
Q Consensus 181 ~~vI~VTG--TnGKTTTt~ml~~iL~~~G~~v~~~ 213 (538)
+++|+|+| -.||||.+.-|-..|+..|++|+.+
T Consensus 1 MkVi~IvG~sgSGKTTLiekLI~~L~~rG~rVavI 35 (452)
T PRK14495 1 MRVYGIIGWKDAGKTGLVERLVAAIAARGFSVSTV 35 (452)
T ss_pred CcEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEE
Confidence 46899999 6799999999999999999997653
No 257
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=69.56 E-value=11 Score=40.82 Aligned_cols=75 Identities=20% Similarity=0.187 Sum_probs=48.4
Q ss_pred ceEEEEeechhhHHHHHHHHHhCCCcEEEecCCCC--------------------hhHHHHHHCCCeEEeCCCCC-CcCC
Q 009293 76 GWIHFVGIGGSGLSALAKLALKQGFEVSGSDLVWS--------------------SYMEGLLEAGANLHIGHSVS-NIQG 134 (538)
Q Consensus 76 ~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~--------------------~~~~~~~~~Ga~~~~~~~~~-~~~~ 134 (538)
++|+|||.|.+|+++ |..|+.+|++|...|.... ...+.+.+.|+.+..+.... ++..
T Consensus 144 ~~VvIIGaGpAGl~a-A~~l~~~G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~~~~~ 222 (471)
T PRK12810 144 KKVAVVGSGPAGLAA-ADQLARAGHKVTVFERADRIGGLLRYGIPDFKLEKEVIDRRIELMEAEGIEFRTNVEVGKDITA 222 (471)
T ss_pred CEEEEECcCHHHHHH-HHHHHhCCCcEEEEecCCCCCceeeecCCcccCCHHHHHHHHHHHHhCCcEEEeCCEECCcCCH
Confidence 569999999999997 7778889999999885311 12344667788887653211 1100
Q ss_pred CCCCCCCCEEEEcCCCC
Q 009293 135 NDGSRFPNAVVASSAIP 151 (538)
Q Consensus 135 ~~~~~~~d~vvvsp~i~ 151 (538)
......+|.+|+..|-.
T Consensus 223 ~~~~~~~d~vvlAtGa~ 239 (471)
T PRK12810 223 EELLAEYDAVFLGTGAY 239 (471)
T ss_pred HHHHhhCCEEEEecCCC
Confidence 00012478888877754
No 258
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=69.39 E-value=5.3 Score=44.19 Aligned_cols=32 Identities=34% Similarity=0.541 Sum_probs=23.1
Q ss_pred ceEEEEeechhhHHHHHHHHHhCCCcEEEecCC
Q 009293 76 GWIHFVGIGGSGLSALAKLALKQGFEVSGSDLV 108 (538)
Q Consensus 76 ~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~ 108 (538)
++|+|||.|.||.+++..+ ...|.++++.+..
T Consensus 2 krVaVIGaG~sGL~a~k~l-~e~g~~~~~fE~~ 33 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNL-LEEGLEVTCFEKS 33 (531)
T ss_dssp -EEEEE--SHHHHHHHHHH-HHTT-EEEEEESS
T ss_pred CEEEEECccHHHHHHHHHH-HHCCCCCeEEecC
Confidence 5799999999999986555 5689999998854
No 259
>PRK07045 putative monooxygenase; Reviewed
Probab=69.24 E-value=5.1 Score=42.07 Aligned_cols=32 Identities=22% Similarity=0.192 Sum_probs=28.1
Q ss_pred ceEEEEeechhhHHHHHHHHHhCCCcEEEecCC
Q 009293 76 GWIHFVGIGGSGLSALAKLALKQGFEVSGSDLV 108 (538)
Q Consensus 76 ~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~ 108 (538)
-+|+|||.|.+|+++ |..|+++|.+|...+..
T Consensus 6 ~~V~IiGgGpaGl~~-A~~L~~~G~~v~v~E~~ 37 (388)
T PRK07045 6 VDVLINGSGIAGVAL-AHLLGARGHSVTVVERA 37 (388)
T ss_pred eEEEEECCcHHHHHH-HHHHHhcCCcEEEEeCC
Confidence 468999999999986 88899999999999854
No 260
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=69.21 E-value=6.6 Score=39.19 Aligned_cols=31 Identities=29% Similarity=0.260 Sum_probs=25.2
Q ss_pred cEEEEe--CCCCchHHHHHHHHHHHH-cCCCeEE
Q 009293 182 NLIAVS--GSHGKSTTASMLAYVLKA-MGDDLTA 212 (538)
Q Consensus 182 ~vI~VT--GTnGKTTTt~ml~~iL~~-~G~~v~~ 212 (538)
++|+|+ |=.|||||+.-|+..|.. .|++|..
T Consensus 3 ~vIav~~KGGVGKTT~a~nLA~~La~~~G~rvLl 36 (275)
T PRK13233 3 RKIAIYGKGGIGKSTTTQNTAAAMAYFHDKKVFI 36 (275)
T ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHhcCCeEEE
Confidence 567777 567799999999999997 5998643
No 261
>PRK06847 hypothetical protein; Provisional
Probab=69.06 E-value=5.6 Score=41.42 Aligned_cols=33 Identities=30% Similarity=0.264 Sum_probs=28.2
Q ss_pred CceEEEEeechhhHHHHHHHHHhCCCcEEEecCC
Q 009293 75 KGWIHFVGIGGSGLSALAKLALKQGFEVSGSDLV 108 (538)
Q Consensus 75 ~~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~ 108 (538)
..+|.|||.|.+|.++ |..|+..|.+|.+.+..
T Consensus 4 ~~~V~IVGaG~aGl~~-A~~L~~~g~~v~v~E~~ 36 (375)
T PRK06847 4 VKKVLIVGGGIGGLSA-AIALRRAGIAVDLVEID 36 (375)
T ss_pred cceEEEECCCHHHHHH-HHHHHhCCCCEEEEecC
Confidence 3569999999999986 78888899999999843
No 262
>CHL00175 minD septum-site determining protein; Validated
Probab=69.05 E-value=7.4 Score=38.97 Aligned_cols=34 Identities=24% Similarity=0.390 Sum_probs=28.3
Q ss_pred CCcEEEEeC---CCCchHHHHHHHHHHHHcCCCeEEE
Q 009293 180 KYNLIAVSG---SHGKSTTASMLAYVLKAMGDDLTAI 213 (538)
Q Consensus 180 ~~~vI~VTG---TnGKTTTt~ml~~iL~~~G~~v~~~ 213 (538)
..++|+|++ =.||||++.-++..|...|++|..+
T Consensus 14 ~~~vi~v~s~KGGvGKTt~a~nLA~~La~~g~~vlli 50 (281)
T CHL00175 14 MSRIIVITSGKGGVGKTTTTANLGMSIARLGYRVALI 50 (281)
T ss_pred CceEEEEEcCCCCCcHHHHHHHHHHHHHhCCCeEEEE
Confidence 347899985 5689999999999999999987544
No 263
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=69.02 E-value=5.9 Score=40.80 Aligned_cols=34 Identities=24% Similarity=0.177 Sum_probs=27.0
Q ss_pred CceEEEEeechhhHHHHHHHHHhCCCcEEEecCCC
Q 009293 75 KGWIHFVGIGGSGLSALAKLALKQGFEVSGSDLVW 109 (538)
Q Consensus 75 ~~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~ 109 (538)
.++|.|||.|..|.+ +|..++..|++|..+|...
T Consensus 7 i~~VaVIGaG~MG~g-iA~~~a~aG~~V~l~D~~~ 40 (321)
T PRK07066 7 IKTFAAIGSGVIGSG-WVARALAHGLDVVAWDPAP 40 (321)
T ss_pred CCEEEEECcCHHHHH-HHHHHHhCCCeEEEEeCCH
Confidence 357999999977766 4566677999999999753
No 264
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=68.97 E-value=5.3 Score=37.23 Aligned_cols=110 Identities=20% Similarity=0.238 Sum_probs=63.0
Q ss_pred hhcCCCceEEEEeechhhHHHHHHHHHhCCCcEEEecCCCChhHHHHHHCCCeEEeCCCCCCcCCCCCCCCCCEEEEcC-
Q 009293 70 DFKNRKGWIHFVGIGGSGLSALAKLALKQGFEVSGSDLVWSSYMEGLLEAGANLHIGHSVSNIQGNDGSRFPNAVVASS- 148 (538)
Q Consensus 70 ~~~~~~~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~d~vvvsp- 148 (538)
.+.+ ++|.|+|.|..|+.. |+.|..-|.+|.++|....+.. ...+.++... ..+++. ...|+|++.-
T Consensus 33 ~l~g--~tvgIiG~G~IG~~v-A~~l~~fG~~V~~~d~~~~~~~-~~~~~~~~~~---~l~ell-----~~aDiv~~~~p 100 (178)
T PF02826_consen 33 ELRG--KTVGIIGYGRIGRAV-ARRLKAFGMRVIGYDRSPKPEE-GADEFGVEYV---SLDELL-----AQADIVSLHLP 100 (178)
T ss_dssp -STT--SEEEEESTSHHHHHH-HHHHHHTT-EEEEEESSCHHHH-HHHHTTEEES---SHHHHH-----HH-SEEEE-SS
T ss_pred ccCC--CEEEEEEEcCCcCeE-eeeeecCCceeEEecccCChhh-hcccccceee---ehhhhc-----chhhhhhhhhc
Confidence 3444 669999999999974 7888889999999995432211 2334454331 111111 1468777743
Q ss_pred CCCCCCHHHHHHHHCCCCeeeHHHHHHHHhcCCcEEEEeCCCCchHHHHHHHHHHHH
Q 009293 149 AIPQDNVEILHAKSVGVPIYKRDYWLAKLTEKYNLIAVSGSHGKSTTASMLAYVLKA 205 (538)
Q Consensus 149 ~i~~~~~~l~~a~~~gi~vi~~~~~l~~~~~~~~vI~VTGTnGKTTTt~ml~~iL~~ 205 (538)
.-+.+. .++.. +++... +...+-|--..|..---.-+...|+.
T Consensus 101 lt~~T~-----------~li~~-~~l~~m--k~ga~lvN~aRG~~vde~aL~~aL~~ 143 (178)
T PF02826_consen 101 LTPETR-----------GLINA-EFLAKM--KPGAVLVNVARGELVDEDALLDALES 143 (178)
T ss_dssp SSTTTT-----------TSBSH-HHHHTS--TTTEEEEESSSGGGB-HHHHHHHHHT
T ss_pred cccccc-----------eeeee-eeeecc--ccceEEEeccchhhhhhhHHHHHHhh
Confidence 222221 22332 334333 23477788888988888888888875
No 265
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=68.96 E-value=3.5 Score=40.92 Aligned_cols=30 Identities=33% Similarity=0.302 Sum_probs=24.3
Q ss_pred cEEEEe--CCCCchHHHHHHHHHHHHcCCCeEE
Q 009293 182 NLIAVS--GSHGKSTTASMLAYVLKAMGDDLTA 212 (538)
Q Consensus 182 ~vI~VT--GTnGKTTTt~ml~~iL~~~G~~v~~ 212 (538)
++|+|. |=.|||||+.-|++.|...| +|..
T Consensus 3 ~~iav~~KGGvGKTT~a~nLA~~La~~G-rVLl 34 (264)
T PRK13231 3 KKIAIYGKGGIGKSTTVSNMAAAYSNDH-RVLV 34 (264)
T ss_pred eEEEEECCCCCcHHHHHHHHhcccCCCC-EEEE
Confidence 455555 67899999999999999999 8643
No 266
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=68.85 E-value=15 Score=37.06 Aligned_cols=118 Identities=21% Similarity=0.157 Sum_probs=65.6
Q ss_pred ceEEEEeec-hhhHHHHHHHHHhCCCcEEEecCCCChhHHHHHHCCCeEEeC--CCCCCcCCCCCCCCCCEEEEcCCCCC
Q 009293 76 GWIHFVGIG-GSGLSALAKLALKQGFEVSGSDLVWSSYMEGLLEAGANLHIG--HSVSNIQGNDGSRFPNAVVASSAIPQ 152 (538)
Q Consensus 76 ~~v~vlG~G-~sG~~~la~~l~~~G~~v~g~D~~~~~~~~~~~~~Ga~~~~~--~~~~~~~~~~~~~~~d~vvvsp~i~~ 152 (538)
++|.|+|.+ ..|+. +|.+|..+|+.|+..+.+.. .+.+.. +.+.++++ -.+..+.. ++. ++..+|+..|+..
T Consensus 153 k~V~ViGrs~~vGrp-la~lL~~~~atVtv~hs~t~-~L~~~~-~~ADIvI~Avgk~~lv~~-~~v-k~GavVIDVgi~~ 227 (279)
T PRK14178 153 KRAVVVGRSIDVGRP-MAALLLNADATVTICHSKTE-NLKAEL-RQADILVSAAGKAGFITP-DMV-KPGATVIDVGINQ 227 (279)
T ss_pred CEEEEECCCccccHH-HHHHHHhCCCeeEEEecChh-HHHHHH-hhCCEEEECCCcccccCH-HHc-CCCcEEEEeeccc
Confidence 568999999 55664 68888889999998764322 233222 23444432 11111110 111 3567888888764
Q ss_pred CCHHHHHHHHCCCCeeeHHHHHHHHhcCCcEEEEeCCCCchHHHHHHHHHHHHcCC
Q 009293 153 DNVEILHAKSVGVPIYKRDYWLAKLTEKYNLIAVSGSHGKSTTASMLAYVLKAMGD 208 (538)
Q Consensus 153 ~~~~l~~a~~~gi~vi~~~~~l~~~~~~~~vI~VTGTnGKTTTt~ml~~iL~~~G~ 208 (538)
.+ | .+....+|-.-......+--|-|=-|.=|++.++.++++.+..
T Consensus 228 ~~---------g-kl~GDvdf~~~~~~a~~iTPVPGGVGp~T~a~L~~N~~~a~~~ 273 (279)
T PRK14178 228 VN---------G-KLCGDVDFDAVKEIAGAITPVPGGVGPMTIATLMENTFDAAKM 273 (279)
T ss_pred cC---------C-CCcCCccHHHHHhhccCcCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 21 0 1222222211111122233444669999999999999987643
No 267
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=68.57 E-value=6.4 Score=35.86 Aligned_cols=40 Identities=30% Similarity=0.275 Sum_probs=30.9
Q ss_pred eEEEEeechhhHHHHHHHHHhCCCcEEEecCCCChhHHHHHH
Q 009293 77 WIHFVGIGGSGLSALAKLALKQGFEVSGSDLVWSSYMEGLLE 118 (538)
Q Consensus 77 ~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~~~~~~~~~ 118 (538)
||.|+|.|.-|.+ +|..|+.+|++|..+..+. +.++.+.+
T Consensus 1 KI~ViGaG~~G~A-lA~~la~~g~~V~l~~~~~-~~~~~i~~ 40 (157)
T PF01210_consen 1 KIAVIGAGNWGTA-LAALLADNGHEVTLWGRDE-EQIEEINE 40 (157)
T ss_dssp EEEEESSSHHHHH-HHHHHHHCTEEEEEETSCH-HHHHHHHH
T ss_pred CEEEECcCHHHHH-HHHHHHHcCCEEEEEeccH-HHHHHHHH
Confidence 5889999998885 6899999999999998543 34444544
No 268
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=68.46 E-value=4.9 Score=38.86 Aligned_cols=30 Identities=33% Similarity=0.429 Sum_probs=23.8
Q ss_pred eEEEEeechhhHHHHHHHHHhCCCcEEEecC
Q 009293 77 WIHFVGIGGSGLSALAKLALKQGFEVSGSDL 107 (538)
Q Consensus 77 ~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~ 107 (538)
.|.|+|.|.+|++| |.+|++.|.+|...+.
T Consensus 19 DV~IVGaGpaGl~a-A~~La~~g~kV~v~E~ 48 (230)
T PF01946_consen 19 DVAIVGAGPAGLTA-AYYLAKAGLKVAVIER 48 (230)
T ss_dssp SEEEE--SHHHHHH-HHHHHHHTS-EEEEES
T ss_pred CEEEECCChhHHHH-HHHHHHCCCeEEEEec
Confidence 37899999999997 8899999999999883
No 269
>KOG3022 consensus Predicted ATPase, nucleotide-binding [Cell cycle control, cell division, chromosome partitioning]
Probab=68.36 E-value=7.4 Score=38.85 Aligned_cols=32 Identities=34% Similarity=0.460 Sum_probs=28.3
Q ss_pred cEEEEe---CCCCchHHHHHHHHHHHHcCCCeEEE
Q 009293 182 NLIAVS---GSHGKSTTASMLAYVLKAMGDDLTAI 213 (538)
Q Consensus 182 ~vI~VT---GTnGKTTTt~ml~~iL~~~G~~v~~~ 213 (538)
.+|.|+ |-.|||||+..++..|...|.+++.+
T Consensus 48 ~iI~VlSGKGGVGKSTvt~nla~~La~~g~~vglL 82 (300)
T KOG3022|consen 48 HIILVLSGKGGVGKSTVTVNLALALASEGKKVGLL 82 (300)
T ss_pred eEEEEEeCCCCCchhHHHHHHHHHHhcCCCcEEEE
Confidence 478887 78999999999999999999998764
No 270
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=68.35 E-value=28 Score=35.19 Aligned_cols=124 Identities=14% Similarity=0.052 Sum_probs=68.7
Q ss_pred ceEEEEeechhhHHHHHHHHHhC----CCcEEEecCCCChhHHH-HHHCCCeEEeCCCCCCcCCCCCCCCCCEEEEcCCC
Q 009293 76 GWIHFVGIGGSGLSALAKLALKQ----GFEVSGSDLVWSSYMEG-LLEAGANLHIGHSVSNIQGNDGSRFPNAVVASSAI 150 (538)
Q Consensus 76 ~~v~vlG~G~sG~~~la~~l~~~----G~~v~g~D~~~~~~~~~-~~~~Ga~~~~~~~~~~~~~~~~~~~~d~vvvsp~i 150 (538)
+++.|+|-+..---.+|.+|..+ |+.|+....+.. .+++ ..+..+.+...-.+..+.. ++ -++..+|+..|+
T Consensus 154 k~vvViGrS~iVGkPla~lL~~~~~~~~AtVtvchs~T~-~l~~~~~~ADIvV~AvG~p~~i~~-~~-ik~GavVIDvGi 230 (287)
T PRK14181 154 RHVAIVGRSNIVGKPLAALLMQKHPDTNATVTLLHSQSE-NLTEILKTADIIIAAIGVPLFIKE-EM-IAEKAVIVDVGT 230 (287)
T ss_pred CEEEEECCCccchHHHHHHHHhCcCCCCCEEEEeCCCCC-CHHHHHhhCCEEEEccCCcCccCH-HH-cCCCCEEEEecc
Confidence 66889998865555678888888 789997764322 2333 3333333322222221211 01 135788888887
Q ss_pred CCCCHHHHHHHHCCCCeeeHHHHHHHHhcCCcEEEEeCCCCchHHHHHHHHHHHHc
Q 009293 151 PQDNVEILHAKSVGVPIYKRDYWLAKLTEKYNLIAVSGSHGKSTTASMLAYVLKAM 206 (538)
Q Consensus 151 ~~~~~~l~~a~~~gi~vi~~~~~l~~~~~~~~vI~VTGTnGKTTTt~ml~~iL~~~ 206 (538)
.+.... ...|..+....+|-.-......+-=|-|--|.=|++.++.++++.+
T Consensus 231 n~~~~~----~~~g~kl~GDVd~e~~~~~a~~iTPVPGGVGp~T~a~L~~N~~~a~ 282 (287)
T PRK14181 231 SRVPAA----NPKGYILVGDVDFNNVVPKCRAITPVPGGVGPMTVAMLMRNTWESY 282 (287)
T ss_pred cccccc----cCCCCeeEeccchHHHHhhcccccCCCCchHHHHHHHHHHHHHHHH
Confidence 652100 0012134444443221112223344558999999999999999875
No 271
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=68.30 E-value=24 Score=35.68 Aligned_cols=118 Identities=16% Similarity=0.029 Sum_probs=65.6
Q ss_pred ceEEEEeechhhHHHHHHHHHh----CCCcEEEecCCCChhHHH-HHHCCCeEEeCCCCCCcCCCCCCCCCCEEEEcCCC
Q 009293 76 GWIHFVGIGGSGLSALAKLALK----QGFEVSGSDLVWSSYMEG-LLEAGANLHIGHSVSNIQGNDGSRFPNAVVASSAI 150 (538)
Q Consensus 76 ~~v~vlG~G~sG~~~la~~l~~----~G~~v~g~D~~~~~~~~~-~~~~Ga~~~~~~~~~~~~~~~~~~~~d~vvvsp~i 150 (538)
+++.|+|-+..---.+|.+|.. +|+.|+..+.+.. .+.+ ..+..+.+.....+..+.. ++- ....+|+..|+
T Consensus 158 k~vvViGrS~iVG~Pla~lL~~~~~~~~AtVt~~hs~t~-~l~~~~~~ADIVI~AvG~p~li~~-~~v-k~GavVIDVGi 234 (286)
T PRK14184 158 KKAVVVGRSNIVGKPLALMLGAPGKFANATVTVCHSRTP-DLAEECREADFLFVAIGRPRFVTA-DMV-KPGAVVVDVGI 234 (286)
T ss_pred CEEEEECCCccchHHHHHHHhCCcccCCCEEEEEeCCch-hHHHHHHhCCEEEEecCCCCcCCH-HHc-CCCCEEEEeee
Confidence 6788999886666678899988 7899998764322 2332 2232332222222221211 111 35678888887
Q ss_pred CCCCHHHHHHHHCCCCeeeHHHHHHHHhcCCcEEEEeCCCCchHHHHHHHHHHHHc
Q 009293 151 PQDNVEILHAKSVGVPIYKRDYWLAKLTEKYNLIAVSGSHGKSTTASMLAYVLKAM 206 (538)
Q Consensus 151 ~~~~~~l~~a~~~gi~vi~~~~~l~~~~~~~~vI~VTGTnGKTTTt~ml~~iL~~~ 206 (538)
.+.. + .+....+|-.-......+-=|-|=-|.=||+.++.++++++
T Consensus 235 ~~~~---------~-~l~GDVdf~~v~~~a~~iTPVPGGVGp~Tva~Ll~N~~~a~ 280 (286)
T PRK14184 235 NRTD---------D-GLVGDCDFEGLSDVASAITPVPGGVGPMTIAQLLVNTVQSW 280 (286)
T ss_pred eccC---------C-CccCCccHHHHHhhceEecCCCCCChHHHHHHHHHHHHHHH
Confidence 6521 0 12333332211111122333447799999999999999875
No 272
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=68.30 E-value=5.3 Score=38.66 Aligned_cols=29 Identities=38% Similarity=0.440 Sum_probs=26.3
Q ss_pred eEEEEeechhhHHHHHHHHHhCCCcEEEec
Q 009293 77 WIHFVGIGGSGLSALAKLALKQGFEVSGSD 106 (538)
Q Consensus 77 ~v~vlG~G~sG~~~la~~l~~~G~~v~g~D 106 (538)
.|.|+|.|.||+.| |++|++.|.+|....
T Consensus 32 DViIVGaGPsGLtA-AyyLAk~g~kV~i~E 60 (262)
T COG1635 32 DVIIVGAGPSGLTA-AYYLAKAGLKVAIFE 60 (262)
T ss_pred cEEEECcCcchHHH-HHHHHhCCceEEEEE
Confidence 37899999999987 899999999999876
No 273
>PRK13236 nitrogenase reductase; Reviewed
Probab=68.05 E-value=8.1 Score=39.24 Aligned_cols=34 Identities=29% Similarity=0.368 Sum_probs=28.0
Q ss_pred CCcEEEEe--CCCCchHHHHHHHHHHHHcCCCeEEE
Q 009293 180 KYNLIAVS--GSHGKSTTASMLAYVLKAMGDDLTAI 213 (538)
Q Consensus 180 ~~~vI~VT--GTnGKTTTt~ml~~iL~~~G~~v~~~ 213 (538)
++++|.|. |=.|||||+.-|+..|.+.|++|..+
T Consensus 5 ~~~~~~~~GKGGVGKTt~a~NLA~~La~~G~rVLli 40 (296)
T PRK13236 5 NIRQIAFYGKGGIGKSTTSQNTLAAMAEMGQRILIV 40 (296)
T ss_pred CceEEEEECCCcCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 45667776 46789999999999999999997654
No 274
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=67.91 E-value=34 Score=31.71 Aligned_cols=17 Identities=35% Similarity=0.399 Sum_probs=13.2
Q ss_pred CCCceEEEEeechhhHH
Q 009293 73 NRKGWIHFVGIGGSGLS 89 (538)
Q Consensus 73 ~~~~~v~vlG~G~sG~~ 89 (538)
.+.++|+|+|.|.|+..
T Consensus 31 ~~a~~I~i~G~G~S~~~ 47 (179)
T cd05005 31 LNAKRIFVYGAGRSGLV 47 (179)
T ss_pred HhCCeEEEEecChhHHH
Confidence 34477999999998764
No 275
>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=67.89 E-value=8 Score=38.15 Aligned_cols=31 Identities=42% Similarity=0.492 Sum_probs=24.4
Q ss_pred cEEEEe---CCCCchHHHHHHHHHHH-HcCCCeEE
Q 009293 182 NLIAVS---GSHGKSTTASMLAYVLK-AMGDDLTA 212 (538)
Q Consensus 182 ~vI~VT---GTnGKTTTt~ml~~iL~-~~G~~v~~ 212 (538)
++|+|+ |=.|||||+..++..|. ..|++|..
T Consensus 3 ~iI~v~n~KGGvGKTT~a~nLa~~La~~~~~kVLl 37 (259)
T COG1192 3 KIIAVANQKGGVGKTTTAVNLAAALAKRGGKKVLL 37 (259)
T ss_pred EEEEEEecCCCccHHHHHHHHHHHHHHhcCCcEEE
Confidence 455555 78899999999999999 66688654
No 276
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=67.75 E-value=20 Score=36.91 Aligned_cols=86 Identities=12% Similarity=-0.012 Sum_probs=48.7
Q ss_pred ceEEEEeechhhHHHHHHHHHhCCCcEEEe-cCCCChhHHHHHHCCCeEEeCCCCCCcCCCCCCCCCCEEEEcCCCCCCC
Q 009293 76 GWIHFVGIGGSGLSALAKLALKQGFEVSGS-DLVWSSYMEGLLEAGANLHIGHSVSNIQGNDGSRFPNAVVASSAIPQDN 154 (538)
Q Consensus 76 ~~v~vlG~G~sG~~~la~~l~~~G~~v~g~-D~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~d~vvvsp~i~~~~ 154 (538)
-+|.++|.|..|+..+..+....+.++.|. |.+..+ .+ ..++.+....+..... ..+|+|++...-....
T Consensus 4 IRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~~~---~~-~~~~~v~~~~d~~e~l-----~~iDVViIctPs~th~ 74 (324)
T TIGR01921 4 IRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRGAE---TL-DTETPVYAVADDEKHL-----DDVDVLILCMGSATDI 74 (324)
T ss_pred cEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCcHH---HH-hhcCCccccCCHHHhc-----cCCCEEEEcCCCccCH
Confidence 468999999999987555555668888874 643222 11 1223222222221111 2589988843222233
Q ss_pred HHHHHHHHCCCCeeeH
Q 009293 155 VEILHAKSVGVPIYKR 170 (538)
Q Consensus 155 ~~l~~a~~~gi~vi~~ 170 (538)
+....+.+.|+.+++.
T Consensus 75 ~~~~~~L~aG~NVV~s 90 (324)
T TIGR01921 75 PEQAPYFAQFANTVDS 90 (324)
T ss_pred HHHHHHHHcCCCEEEC
Confidence 4555666777777765
No 277
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=67.66 E-value=6.4 Score=39.69 Aligned_cols=33 Identities=24% Similarity=0.273 Sum_probs=28.3
Q ss_pred ceEEEEeechhhHHHHHHHHHhCCCcEEEecCCC
Q 009293 76 GWIHFVGIGGSGLSALAKLALKQGFEVSGSDLVW 109 (538)
Q Consensus 76 ~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~ 109 (538)
++|.|||.|.-|.+ +|..|+..|++|.++|.+.
T Consensus 2 ~~V~VIG~G~mG~~-iA~~la~~G~~V~~~d~~~ 34 (288)
T PRK09260 2 EKLVVVGAGVMGRG-IAYVFAVSGFQTTLVDIKQ 34 (288)
T ss_pred cEEEEECccHHHHH-HHHHHHhCCCcEEEEeCCH
Confidence 46899999999987 5788888999999999753
No 278
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=67.63 E-value=12 Score=39.44 Aligned_cols=33 Identities=33% Similarity=0.341 Sum_probs=27.1
Q ss_pred CceEEEEeechhhHHHHHHHHHhCCCcEEEecCC
Q 009293 75 KGWIHFVGIGGSGLSALAKLALKQGFEVSGSDLV 108 (538)
Q Consensus 75 ~~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~ 108 (538)
.++|+|+|.|..|+.+ +..+...|.+|.+.|.+
T Consensus 167 ~~~VlViGaG~vG~~a-a~~a~~lGa~V~v~d~~ 199 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNA-AKMANGLGATVTILDIN 199 (370)
T ss_pred CceEEEEcCCHHHHHH-HHHHHHCCCeEEEEECC
Confidence 4569999999999997 45556789999999954
No 279
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=67.56 E-value=9.2 Score=40.68 Aligned_cols=64 Identities=13% Similarity=0.040 Sum_probs=43.1
Q ss_pred ceEEEEeechhhHHHHHHHHHhCCCcEEEecCCCChhHHHHHHCCCeEEeCCCCCCcCCCCCCCCCCEEEEcCC
Q 009293 76 GWIHFVGIGGSGLSALAKLALKQGFEVSGSDLVWSSYMEGLLEAGANLHIGHSVSNIQGNDGSRFPNAVVASSA 149 (538)
Q Consensus 76 ~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~d~vvvsp~ 149 (538)
++|.|+|.|..|+.+ |..++..|.+|.+.|.++.. ...+...|+.+..-+ +.+ +..|++|..+|
T Consensus 196 k~VvViG~G~IG~~v-A~~ak~~Ga~ViV~d~dp~r-~~~A~~~G~~v~~le--eal------~~aDVVItaTG 259 (406)
T TIGR00936 196 KTVVVAGYGWCGKGI-AMRARGMGARVIVTEVDPIR-ALEAAMDGFRVMTME--EAA------KIGDIFITATG 259 (406)
T ss_pred CEEEEECCCHHHHHH-HHHHhhCcCEEEEEeCChhh-HHHHHhcCCEeCCHH--HHH------hcCCEEEECCC
Confidence 569999999999986 67778899999999865432 334555676542111 112 25788887665
No 280
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=67.32 E-value=5.4 Score=39.80 Aligned_cols=29 Identities=38% Similarity=0.476 Sum_probs=25.4
Q ss_pred CcEEEEeCC--CCchHHHHHHHHHHHHcCCC
Q 009293 181 YNLIAVSGS--HGKSTTASMLAYVLKAMGDD 209 (538)
Q Consensus 181 ~~vI~VTGT--nGKTTTt~ml~~iL~~~G~~ 209 (538)
.-+|||+|+ .||+||+..+..+|+..+..
T Consensus 82 pfIIgiaGsvavGKST~ar~L~~ll~~~~~~ 112 (283)
T COG1072 82 PFIIGIAGSVAVGKSTTARILQALLSRWPES 112 (283)
T ss_pred CEEEEeccCccccHHHHHHHHHHHHhhCCCC
Confidence 459999997 58999999999999988765
No 281
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=67.27 E-value=6.3 Score=36.37 Aligned_cols=47 Identities=28% Similarity=0.232 Sum_probs=32.0
Q ss_pred CceEEEEeechhhHHHHHHHHHhCCCcEEEecCCCChhHHHHHHCCCeE
Q 009293 75 KGWIHFVGIGGSGLSALAKLALKQGFEVSGSDLVWSSYMEGLLEAGANL 123 (538)
Q Consensus 75 ~~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~~~~~~~~~~Ga~~ 123 (538)
..+|+|+|.|..|++| ++.+...|++|...|... +...++...+...
T Consensus 20 p~~vvv~G~G~vg~gA-~~~~~~lGa~v~~~d~~~-~~~~~~~~~~~~~ 66 (168)
T PF01262_consen 20 PAKVVVTGAGRVGQGA-AEIAKGLGAEVVVPDERP-ERLRQLESLGAYF 66 (168)
T ss_dssp T-EEEEESTSHHHHHH-HHHHHHTT-EEEEEESSH-HHHHHHHHTTTEE
T ss_pred CeEEEEECCCHHHHHH-HHHHhHCCCEEEeccCCH-HHHHhhhcccCce
Confidence 3678999999999998 566667899999999532 1233445555544
No 282
>PLN02268 probable polyamine oxidase
Probab=67.18 E-value=5.2 Score=42.76 Aligned_cols=30 Identities=23% Similarity=0.309 Sum_probs=26.1
Q ss_pred eEEEEeechhhHHHHHHHHHhCCCcEEEecC
Q 009293 77 WIHFVGIGGSGLSALAKLALKQGFEVSGSDL 107 (538)
Q Consensus 77 ~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~ 107 (538)
+|.|||.|.||.+| |+.|...|++|.+...
T Consensus 2 ~VvVIGaGisGL~a-A~~L~~~g~~v~vlEa 31 (435)
T PLN02268 2 SVIVIGGGIAGIAA-ARALHDASFKVTLLES 31 (435)
T ss_pred CEEEECCCHHHHHH-HHHHHhCCCeEEEEeC
Confidence 57899999999997 7888889999998763
No 283
>PRK10818 cell division inhibitor MinD; Provisional
Probab=67.17 E-value=8.2 Score=38.32 Aligned_cols=31 Identities=29% Similarity=0.456 Sum_probs=26.0
Q ss_pred cEEEEe---CCCCchHHHHHHHHHHHHcCCCeEE
Q 009293 182 NLIAVS---GSHGKSTTASMLAYVLKAMGDDLTA 212 (538)
Q Consensus 182 ~vI~VT---GTnGKTTTt~ml~~iL~~~G~~v~~ 212 (538)
++|+|+ |=.||||++.-++..|...|++|..
T Consensus 3 kviav~s~KGGvGKTt~a~nlA~~la~~g~~vll 36 (270)
T PRK10818 3 RIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVV 36 (270)
T ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEE
Confidence 577776 5678999999999999999988654
No 284
>PRK13243 glyoxylate reductase; Reviewed
Probab=67.05 E-value=23 Score=36.65 Aligned_cols=106 Identities=22% Similarity=0.211 Sum_probs=62.0
Q ss_pred ceEEEEeechhhHHHHHHHHHhCCCcEEEecCCCChhHHHHHHCCCeEEeCCCCCCcCCCCCCCCCCEEEEcCCCCCCCH
Q 009293 76 GWIHFVGIGGSGLSALAKLALKQGFEVSGSDLVWSSYMEGLLEAGANLHIGHSVSNIQGNDGSRFPNAVVASSAIPQDNV 155 (538)
Q Consensus 76 ~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~d~vvvsp~i~~~~~ 155 (538)
++|.|||+|..|++. |+.|...|.+|.++|..... ....+.|+.. . ...++. ...|+|++.-- ..+
T Consensus 151 ktvgIiG~G~IG~~v-A~~l~~~G~~V~~~d~~~~~--~~~~~~~~~~--~-~l~ell-----~~aDiV~l~lP---~t~ 216 (333)
T PRK13243 151 KTIGIIGFGRIGQAV-ARRAKGFGMRILYYSRTRKP--EAEKELGAEY--R-PLEELL-----RESDFVSLHVP---LTK 216 (333)
T ss_pred CEEEEECcCHHHHHH-HHHHHHCCCEEEEECCCCCh--hhHHHcCCEe--c-CHHHHH-----hhCCEEEEeCC---CCh
Confidence 579999999999974 78888899999999964332 1122335432 1 111111 25788887642 222
Q ss_pred HHHHHHHCCCCeeeHHHHHHHHhcCCcEEEEeCCCCchHHHHHHHHHHHH
Q 009293 156 EILHAKSVGVPIYKRDYWLAKLTEKYNLIAVSGSHGKSTTASMLAYVLKA 205 (538)
Q Consensus 156 ~l~~a~~~gi~vi~~~~~l~~~~~~~~vI~VTGTnGKTTTt~ml~~iL~~ 205 (538)
+-.. ++.. +.+... + ...+-|-=+.|.---..-|...|++
T Consensus 217 ~T~~-------~i~~-~~~~~m-k-~ga~lIN~aRg~~vd~~aL~~aL~~ 256 (333)
T PRK13243 217 ETYH-------MINE-ERLKLM-K-PTAILVNTARGKVVDTKALVKALKE 256 (333)
T ss_pred HHhh-------ccCH-HHHhcC-C-CCeEEEECcCchhcCHHHHHHHHHc
Confidence 2111 1221 334333 2 2356666677777777777777764
No 285
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=67.02 E-value=11 Score=40.12 Aligned_cols=69 Identities=16% Similarity=0.137 Sum_probs=43.0
Q ss_pred CceEEEEeechhhHHHHHHHHHhCC-CcEEEecCCCChhHHH-HHHCCCeEEeCCCCCCcCCCCCCCCCCEEEEcCCC
Q 009293 75 KGWIHFVGIGGSGLSALAKLALKQG-FEVSGSDLVWSSYMEG-LLEAGANLHIGHSVSNIQGNDGSRFPNAVVASSAI 150 (538)
Q Consensus 75 ~~~v~vlG~G~sG~~~la~~l~~~G-~~v~g~D~~~~~~~~~-~~~~Ga~~~~~~~~~~~~~~~~~~~~d~vvvsp~i 150 (538)
.++++|||+|-.|..+ |..|+.+| .++........ -+.+ +.+.|+.+..-.+.... ...+|+||.+.+-
T Consensus 178 ~~~vlvIGAGem~~lv-a~~L~~~g~~~i~IaNRT~e-rA~~La~~~~~~~~~l~el~~~-----l~~~DvVissTsa 248 (414)
T COG0373 178 DKKVLVIGAGEMGELV-AKHLAEKGVKKITIANRTLE-RAEELAKKLGAEAVALEELLEA-----LAEADVVISSTSA 248 (414)
T ss_pred cCeEEEEcccHHHHHH-HHHHHhCCCCEEEEEcCCHH-HHHHHHHHhCCeeecHHHHHHh-----hhhCCEEEEecCC
Confidence 4679999999999876 77788888 66666653322 2233 44567655332221111 1268999998763
No 286
>COG3804 Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]
Probab=67.01 E-value=4.1 Score=40.58 Aligned_cols=87 Identities=17% Similarity=0.205 Sum_probs=51.6
Q ss_pred eEEEEeechhhHHHHHHHHHhCCCcEEEe-cCCCC---hhHHHHH---HCCCeEEeCCCCCCcCCCCCCCCCCEEEEcCC
Q 009293 77 WIHFVGIGGSGLSALAKLALKQGFEVSGS-DLVWS---SYMEGLL---EAGANLHIGHSVSNIQGNDGSRFPNAVVASSA 149 (538)
Q Consensus 77 ~v~vlG~G~sG~~~la~~l~~~G~~v~g~-D~~~~---~~~~~~~---~~Ga~~~~~~~~~~~~~~~~~~~~d~vvvsp~ 149 (538)
.+.+.|.|.-|+.+++.+++++|..+.|. +++.. +.+.++. +.|+......+..-.. .++.+++.|-
T Consensus 4 ~vvqyGtG~vGv~air~l~akpe~elvgawv~s~ak~Gkdlgelagl~dlgV~a~~~~~avlAt------l~~~~~y~~~ 77 (350)
T COG3804 4 RVVQYGTGSVGVAAIRGLLAKPELELVGAWVHSAAKSGKDLGELAGLPDLGVIATNSIDAVLAT------LADAVIYAPL 77 (350)
T ss_pred eeEEeccchHHHHHHHHHHcCCCCceEEEEecCcccccccHHHhcCCCCceeEeecccccceec------cccceeeecc
Confidence 36789999999999999999999998864 43322 1222221 2233332222222111 3566676654
Q ss_pred CCCCCHHHHHHHHCCCCeeeH
Q 009293 150 IPQDNVEILHAKSVGVPIYKR 170 (538)
Q Consensus 150 i~~~~~~l~~a~~~gi~vi~~ 170 (538)
.| .-.++++....|+.|++.
T Consensus 78 ~~-~~~~y~rlL~aGiNVv~~ 97 (350)
T COG3804 78 LP-SVDEYARLLRAGINVVTP 97 (350)
T ss_pred cc-hHHHHHHHHHcCCceecc
Confidence 43 233566666778888876
No 287
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=66.98 E-value=6.6 Score=35.93 Aligned_cols=29 Identities=31% Similarity=0.421 Sum_probs=24.3
Q ss_pred EEeCCCCchHHHHHHHHHHHHcCCCeEEE
Q 009293 185 AVSGSHGKSTTASMLAYVLKAMGDDLTAI 213 (538)
Q Consensus 185 ~VTGTnGKTTTt~ml~~iL~~~G~~v~~~ 213 (538)
.-.|-.||||++..++..|...|++|..+
T Consensus 6 ~~kgG~GKtt~a~~la~~l~~~g~~vllv 34 (179)
T cd02036 6 SGKGGVGKTTTTANLGTALAQLGYKVVLI 34 (179)
T ss_pred eCCCCCCHHHHHHHHHHHHHhCCCeEEEE
Confidence 33477899999999999999999987544
No 288
>PF09140 MipZ: ATPase MipZ; InterPro: IPR015223 Cell division in bacteria is facilitated by a polymeric ring structure, the Z ring, composed of tubulin-like FtsZ protofilaments. Correct positioning of the division plane is a prerequisite for the generation of daughter cells with a normal chromosome complement. In Caulobacter crescentus MipZ, an essential protein, coordinates and regulates the assembly of the FtsZ cytokinetic ring during cell division. MipZ, forms a complex with the partitioning protein ParB near the origin of replication and localizes with the duplicated origin regions to the cell poles. MipZ also directly interferes with FtsZ polymerisation, thereby restricting FtsZ ring formation to mid-cell, the region of lowest MipZ concentration. In eukaryotes members of this entry belong to the Mrp/NBP35 ATP-binding protein family, and specifically the NUBP2/CFD1 subfamily. This includes the cytosolic Fe-S cluster assembly factor Cfd1, which is a component of the cytosolic iron-sulphur (Fe/S) protein assembly machinery. This protein is required for maturation of extra-mitochondrial Fe/S proteins. It may bind and transfer a labile 4Fe-4S cluster to target apoproteins. Cfd1 is also required for biogenesis and export of both ribosomal subunits, suggesting a role in assembly of the Fe/S clusters in RLI1, a protein which performs rRNA processing and ribosome export. ; PDB: 2XIT_B 2XJ4_A 2XJ9_A.
Probab=66.95 E-value=7.5 Score=38.35 Aligned_cols=31 Identities=42% Similarity=0.560 Sum_probs=24.4
Q ss_pred EEEEe---CCCCchHHHHHHHHHHHHcCCCeEEE
Q 009293 183 LIAVS---GSHGKSTTASMLAYVLKAMGDDLTAI 213 (538)
Q Consensus 183 vI~VT---GTnGKTTTt~ml~~iL~~~G~~v~~~ 213 (538)
+|.|. |=.|||||+.-++-.|...|++|+.+
T Consensus 2 iIvV~sgKGGvGKSTva~~lA~aLa~~G~kVg~l 35 (261)
T PF09140_consen 2 IIVVGSGKGGVGKSTVAVNLAVALARMGKKVGLL 35 (261)
T ss_dssp EEEEE-SSTTTTHHHHHHHHHHHHHCTT--EEEE
T ss_pred EEEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEE
Confidence 55665 77899999999999999999998754
No 289
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=66.94 E-value=30 Score=35.13 Aligned_cols=124 Identities=15% Similarity=0.074 Sum_probs=66.2
Q ss_pred ceEEEEeechhhHHHHHHHHHhC----CCcEEEecCCCChhHHH-HHHCCCeEEeCCCCCCcCCCCCCCCCCEEEEcCCC
Q 009293 76 GWIHFVGIGGSGLSALAKLALKQ----GFEVSGSDLVWSSYMEG-LLEAGANLHIGHSVSNIQGNDGSRFPNAVVASSAI 150 (538)
Q Consensus 76 ~~v~vlG~G~sG~~~la~~l~~~----G~~v~g~D~~~~~~~~~-~~~~Ga~~~~~~~~~~~~~~~~~~~~d~vvvsp~i 150 (538)
+++.|||-+..---.+|.+|..+ ++.|+....+-. .+.+ ..+..+.+...-.+..+.. ++ -.+..+|+..|+
T Consensus 158 K~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T~-nl~~~~~~ADIvIsAvGkp~~i~~-~~-vk~gavVIDvGi 234 (293)
T PRK14185 158 KKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVCHSRSK-NLKKECLEADIIIAALGQPEFVKA-DM-VKEGAVVIDVGT 234 (293)
T ss_pred CEEEEECCCccchHHHHHHHHcCCCCCCCEEEEecCCCC-CHHHHHhhCCEEEEccCCcCccCH-HH-cCCCCEEEEecC
Confidence 56889998866555678888888 688887653322 2333 2232332222222221211 01 135678888888
Q ss_pred CCC-CHHHHHHHHCCCCeeeHHHHHHHHhcCCcEEEEeCCCCchHHHHHHHHHHHHc
Q 009293 151 PQD-NVEILHAKSVGVPIYKRDYWLAKLTEKYNLIAVSGSHGKSTTASMLAYVLKAM 206 (538)
Q Consensus 151 ~~~-~~~l~~a~~~gi~vi~~~~~l~~~~~~~~vI~VTGTnGKTTTt~ml~~iL~~~ 206 (538)
.+. ++ .++.|..+....+|-.-......+-=|-|=-|.=||+.++.++++++
T Consensus 235 n~~~~~----~~~~g~klvGDVdf~~v~~~a~~iTPVPGGVGp~T~a~L~~N~~~a~ 287 (293)
T PRK14185 235 TRVPDA----TRKSGFKLTGDVKFDEVAPKCSYITPVPGGVGPMTIVSLMKNTLLAG 287 (293)
T ss_pred cccccc----cccCCCeeEcCCCHHHHHhhccEeCCCCCCchHHHHHHHHHHHHHHH
Confidence 652 11 01112234444443221111112222337799999999999999875
No 290
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=66.91 E-value=13 Score=37.28 Aligned_cols=31 Identities=19% Similarity=0.239 Sum_probs=21.9
Q ss_pred ceEEEEeechhhHHHHHHHHHh--CCCcEE-EecC
Q 009293 76 GWIHFVGIGGSGLSALAKLALK--QGFEVS-GSDL 107 (538)
Q Consensus 76 ~~v~vlG~G~sG~~~la~~l~~--~G~~v~-g~D~ 107 (538)
.+|.|||.|..|..- +..|.. .|.++. ++|.
T Consensus 7 irIGIIG~G~IG~~~-a~~L~~~~~~~el~aV~dr 40 (271)
T PRK13302 7 LRVAIAGLGAIGKAI-AQALDRGLPGLTLSAVAVR 40 (271)
T ss_pred eEEEEECccHHHHHH-HHHHHhcCCCeEEEEEECC
Confidence 569999999999865 444443 577776 4564
No 291
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=66.88 E-value=8.7 Score=38.43 Aligned_cols=34 Identities=41% Similarity=0.503 Sum_probs=29.3
Q ss_pred CCcEEEEe---CCCCchHHHHHHHHHHHHcCCCeEEE
Q 009293 180 KYNLIAVS---GSHGKSTTASMLAYVLKAMGDDLTAI 213 (538)
Q Consensus 180 ~~~vI~VT---GTnGKTTTt~ml~~iL~~~G~~v~~~ 213 (538)
..++|+|| |--|||||+..|+..|.+.|++|+.+
T Consensus 56 ~~~~I~V~S~kgGvGKStva~nLA~alA~~G~rVlli 92 (265)
T COG0489 56 VKNVIAVTSGKGGVGKSTVAVNLAAALAQLGKRVLLL 92 (265)
T ss_pred cceEEEEEeCCCCCcHHHHHHHHHHHHHhcCCcEEEE
Confidence 45789998 56789999999999999999998654
No 292
>PRK07236 hypothetical protein; Provisional
Probab=66.84 E-value=6.1 Score=41.52 Aligned_cols=32 Identities=25% Similarity=0.205 Sum_probs=28.2
Q ss_pred ceEEEEeechhhHHHHHHHHHhCCCcEEEecCC
Q 009293 76 GWIHFVGIGGSGLSALAKLALKQGFEVSGSDLV 108 (538)
Q Consensus 76 ~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~ 108 (538)
.+|+|||.|.+|.++ |..|++.|.+|.+.+..
T Consensus 7 ~~ViIVGaG~aGl~~-A~~L~~~G~~v~v~E~~ 38 (386)
T PRK07236 7 PRAVVIGGSLGGLFA-ALLLRRAGWDVDVFERS 38 (386)
T ss_pred CeEEEECCCHHHHHH-HHHHHhCCCCEEEEecC
Confidence 568999999999985 88999999999999854
No 293
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=66.68 E-value=36 Score=34.24 Aligned_cols=32 Identities=16% Similarity=0.142 Sum_probs=24.9
Q ss_pred ceEEEEeechhhHHHHHHHHHhCCC-cEEEecCC
Q 009293 76 GWIHFVGIGGSGLSALAKLALKQGF-EVSGSDLV 108 (538)
Q Consensus 76 ~~v~vlG~G~sG~~~la~~l~~~G~-~v~g~D~~ 108 (538)
++++|||.|+++++++. .|+..|. ++...+..
T Consensus 126 k~vlvlGaGGaarai~~-aL~~~G~~~i~I~nRt 158 (282)
T TIGR01809 126 FRGLVIGAGGTSRAAVY-ALASLGVTDITVINRN 158 (282)
T ss_pred ceEEEEcCcHHHHHHHH-HHHHcCCCeEEEEeCC
Confidence 56999999999998754 4566785 68888754
No 294
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=66.59 E-value=15 Score=34.43 Aligned_cols=34 Identities=35% Similarity=0.325 Sum_probs=28.6
Q ss_pred CCcEEEEeC--CCCchHHHHHHHHHHHHcCCCeEEE
Q 009293 180 KYNLIAVSG--SHGKSTTASMLAYVLKAMGDDLTAI 213 (538)
Q Consensus 180 ~~~vI~VTG--TnGKTTTt~ml~~iL~~~G~~v~~~ 213 (538)
+..+|-.|| -.||||.+..++..|.+.|+.+..+
T Consensus 22 ~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~L 57 (197)
T COG0529 22 KGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLL 57 (197)
T ss_pred CCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEe
Confidence 345999999 5689999999999999999976443
No 295
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=66.58 E-value=7.2 Score=42.18 Aligned_cols=33 Identities=18% Similarity=0.255 Sum_probs=27.8
Q ss_pred CcEEEEeCCC---CchHHHHHHHHHHHHcCCCeEEE
Q 009293 181 YNLIAVSGSH---GKSTTASMLAYVLKAMGDDLTAI 213 (538)
Q Consensus 181 ~~vI~VTGTn---GKTTTt~ml~~iL~~~G~~v~~~ 213 (538)
++.|.||||. |||+++..|...|++.|++|..+
T Consensus 3 m~~i~I~gt~s~~GKT~it~~L~~~L~~~G~~V~~f 38 (451)
T PRK01077 3 MPALVIAAPASGSGKTTVTLGLMRALRRRGLRVQPF 38 (451)
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHhCCCCccee
Confidence 4678888875 59999999999999999987654
No 296
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=66.24 E-value=5.7 Score=41.39 Aligned_cols=29 Identities=28% Similarity=0.151 Sum_probs=26.1
Q ss_pred EEEEeechhhHHHHHHHHHhCCCcEEEecC
Q 009293 78 IHFVGIGGSGLSALAKLALKQGFEVSGSDL 107 (538)
Q Consensus 78 v~vlG~G~sG~~~la~~l~~~G~~v~g~D~ 107 (538)
|.|||.|.+|.++ |..|+++|.+|...|.
T Consensus 3 vvIIGaGi~G~s~-A~~La~~g~~V~l~e~ 31 (380)
T TIGR01377 3 VIVVGAGIMGCFA-AYHLAKHGKKTLLLEQ 31 (380)
T ss_pred EEEECCCHHHHHH-HHHHHHCCCeEEEEec
Confidence 7899999999986 8888999999999884
No 297
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=66.18 E-value=25 Score=35.96 Aligned_cols=70 Identities=19% Similarity=0.170 Sum_probs=43.8
Q ss_pred eEEEEeechhhHHHHHHHHHhCCCcEEEecCCCChhHHHHHHCCCeEEeCCC--C--C-CcCCCCCCCCCCEEEEcCC
Q 009293 77 WIHFVGIGGSGLSALAKLALKQGFEVSGSDLVWSSYMEGLLEAGANLHIGHS--V--S-NIQGNDGSRFPNAVVASSA 149 (538)
Q Consensus 77 ~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~~~~~~~~~~Ga~~~~~~~--~--~-~~~~~~~~~~~d~vvvsp~ 149 (538)
+|+|+|.|..|.- ++..|++.|+.|...- + .+.++.+.+.|..+.-... . . ..........+|+|++.+-
T Consensus 2 kI~IlGaGAvG~l-~g~~L~~~g~~V~~~~-R-~~~~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlviv~vK 76 (307)
T COG1893 2 KILILGAGAIGSL-LGARLAKAGHDVTLLV-R-SRRLEALKKKGLRIEDEGGNFTTPVVAATDAEALGPADLVIVTVK 76 (307)
T ss_pred eEEEECCcHHHHH-HHHHHHhCCCeEEEEe-c-HHHHHHHHhCCeEEecCCCccccccccccChhhcCCCCEEEEEec
Confidence 5899999999975 5777788897776543 2 2246777788887755422 0 0 0000112236899998764
No 298
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=66.08 E-value=6 Score=39.29 Aligned_cols=26 Identities=38% Similarity=0.541 Sum_probs=22.7
Q ss_pred CCCCchHHHHHHHHHHHHcCCCeEEE
Q 009293 188 GSHGKSTTASMLAYVLKAMGDDLTAI 213 (538)
Q Consensus 188 GTnGKTTTt~ml~~iL~~~G~~v~~~ 213 (538)
|=.|||||+.-|+..|...|++|..+
T Consensus 9 GGVGKTT~~~nLA~~La~~g~rVLli 34 (268)
T TIGR01281 9 GGIGKSTTSSNLSVAFAKLGKRVLQI 34 (268)
T ss_pred CcCcHHHHHHHHHHHHHhCCCeEEEE
Confidence 67899999999999999999996543
No 299
>PRK08163 salicylate hydroxylase; Provisional
Probab=66.02 E-value=6.4 Score=41.34 Aligned_cols=32 Identities=31% Similarity=0.286 Sum_probs=28.2
Q ss_pred ceEEEEeechhhHHHHHHHHHhCCCcEEEecCC
Q 009293 76 GWIHFVGIGGSGLSALAKLALKQGFEVSGSDLV 108 (538)
Q Consensus 76 ~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~ 108 (538)
.+|+|||.|.+|+++ |..|+..|.+|.+.|..
T Consensus 5 ~~V~IvGaGiaGl~~-A~~L~~~g~~v~v~Er~ 36 (396)
T PRK08163 5 TPVLIVGGGIGGLAA-ALALARQGIKVKLLEQA 36 (396)
T ss_pred CeEEEECCcHHHHHH-HHHHHhCCCcEEEEeeC
Confidence 569999999999975 88999999999999854
No 300
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=66.00 E-value=4.6 Score=36.68 Aligned_cols=27 Identities=41% Similarity=0.385 Sum_probs=21.8
Q ss_pred CCcEEEEeCC--CCchHHHHHHHHHHHHcCCC
Q 009293 180 KYNLIAVSGS--HGKSTTASMLAYVLKAMGDD 209 (538)
Q Consensus 180 ~~~vI~VTGT--nGKTTTt~ml~~iL~~~G~~ 209 (538)
-.|-|-|||| .||||++..|+..+ |++
T Consensus 6 ~~PNILvtGTPG~GKstl~~~lae~~---~~~ 34 (176)
T KOG3347|consen 6 ERPNILVTGTPGTGKSTLAERLAEKT---GLE 34 (176)
T ss_pred cCCCEEEeCCCCCCchhHHHHHHHHh---CCc
Confidence 4578999999 47999999999665 554
No 301
>PF06418 CTP_synth_N: CTP synthase N-terminus; InterPro: IPR017456 CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism, catalysing the synthesis of CTP from UTP by amination of the pyrimidine ring at the 4-position []. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found roughly 500 bp upstream of enolase in both beta (Nitrosomonas europaea) and gamma (Escherichia coli) subdivisions of Proteobacterium [].; GO: 0003883 CTP synthase activity, 0006221 pyrimidine nucleotide biosynthetic process; PDB: 2VO1_A 3NVA_B 1VCN_A 1VCO_A 1VCM_A 3IHL_B 2AD5_A 1S1M_B.
Probab=65.81 E-value=13 Score=36.90 Aligned_cols=57 Identities=30% Similarity=0.452 Sum_probs=34.2
Q ss_pred cEEEEeC----CCCchHHHHHHHHHHHHcCCCeEEE-eCCCCCCCCCCcc-ccCCCcEEEEeec
Q 009293 182 NLIAVSG----SHGKSTTASMLAYVLKAMGDDLTAI-VGAHVPQFPDGSI-FYGGGKNFVLEAD 239 (538)
Q Consensus 182 ~vI~VTG----TnGKTTTt~ml~~iL~~~G~~v~~~-~g~~~~~~~~~~~-~~~~~~~~VlE~~ 239 (538)
+.|.||| +=||+-|++-|..+|+..|++|... .-++++- ..+.+ ...-.+.||.+.+
T Consensus 2 KyIfVtGGV~SglGKGi~aaSig~lLk~~G~~V~~~K~DPYlNv-D~GtmsP~qHGEVfVt~DG 64 (276)
T PF06418_consen 2 KYIFVTGGVVSGLGKGITAASIGRLLKSRGYKVTMIKIDPYLNV-DPGTMSPYQHGEVFVTDDG 64 (276)
T ss_dssp EEEEEEE-SSSSSSHHHHHHHHHHHHHCTT--EEEEEEE-SSSS-SCCCS-CCTCS-EEE-TTS
T ss_pred cEEEEeCCccccccHHHHHHHHHHHHHhCCeeeeeeeecccccc-CCCCCCCcCccceeEecCc
Confidence 5788898 5699999999999999999997643 2333321 11111 1223568888753
No 302
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=65.80 E-value=7 Score=40.73 Aligned_cols=32 Identities=28% Similarity=0.212 Sum_probs=27.8
Q ss_pred ceEEEEeechhhHHHHHHHHHhCCCcEEEecCC
Q 009293 76 GWIHFVGIGGSGLSALAKLALKQGFEVSGSDLV 108 (538)
Q Consensus 76 ~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~ 108 (538)
.+|.|||.|.+|.++ |.+|++.|.+|...|..
T Consensus 5 ~~vvVIGgGi~Gls~-A~~La~~G~~V~vie~~ 36 (387)
T COG0665 5 MDVVIIGGGIVGLSA-AYYLAERGADVTVLEAG 36 (387)
T ss_pred ceEEEECCcHHHHHH-HHHHHHcCCEEEEEecC
Confidence 568899999999876 89999999999988843
No 303
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=65.73 E-value=9.2 Score=38.39 Aligned_cols=32 Identities=41% Similarity=0.488 Sum_probs=26.4
Q ss_pred CCcEEEEeCCC--CchHHHHHHHHHHHHcCCCeE
Q 009293 180 KYNLIAVSGSH--GKSTTASMLAYVLKAMGDDLT 211 (538)
Q Consensus 180 ~~~vI~VTGTn--GKTTTt~ml~~iL~~~G~~v~ 211 (538)
+.++|.++|.+ |||||+.-++..|+..|++|.
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~ 104 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVL 104 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEE
Confidence 35688888854 799999999999998888754
No 304
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=65.69 E-value=8.5 Score=37.01 Aligned_cols=29 Identities=28% Similarity=0.481 Sum_probs=24.0
Q ss_pred EEEeCC---CCchHHHHHHHHHHHHcCCCeEE
Q 009293 184 IAVSGS---HGKSTTASMLAYVLKAMGDDLTA 212 (538)
Q Consensus 184 I~VTGT---nGKTTTt~ml~~iL~~~G~~v~~ 212 (538)
|-|||| .|||+++..|.+.|++.|++++.
T Consensus 2 i~I~~t~t~~GKT~vs~~L~~~l~~~g~~v~~ 33 (222)
T PRK00090 2 LFVTGTDTDVGKTVVTAALAQALREAGYSVAG 33 (222)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHHcCCceEE
Confidence 345554 69999999999999999998754
No 305
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=65.67 E-value=13 Score=37.99 Aligned_cols=69 Identities=20% Similarity=0.193 Sum_probs=42.5
Q ss_pred eEEEEeechhhHHHHHHHHHhCC--CcEEEecCCCChh---HHHHHHCCCeE-----EeCCCCCCcCCCCCCCCCCEEEE
Q 009293 77 WIHFVGIGGSGLSALAKLALKQG--FEVSGSDLVWSSY---MEGLLEAGANL-----HIGHSVSNIQGNDGSRFPNAVVA 146 (538)
Q Consensus 77 ~v~vlG~G~sG~~~la~~l~~~G--~~v~g~D~~~~~~---~~~~~~~Ga~~-----~~~~~~~~~~~~~~~~~~d~vvv 146 (538)
+|.|||.|..|.+. |..|+.+| .++...|.+.... +.++.. ...+ ....+...+ +.+|++|+
T Consensus 2 kI~IIGaG~VG~~~-a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~-~~~~~~~~~i~~~d~~~l------~~aDiVii 73 (308)
T cd05292 2 KVAIVGAGFVGSTT-AYALLLRGLASEIVLVDINKAKAEGEAMDLAH-GTPFVKPVRIYAGDYADC------KGADVVVI 73 (308)
T ss_pred EEEEECCCHHHHHH-HHHHHHcCCCCEEEEEECCchhhhhHHHHHHc-cccccCCeEEeeCCHHHh------CCCCEEEE
Confidence 58899999999985 66777788 6899999764321 112221 1111 111122222 36899999
Q ss_pred cCCCCCC
Q 009293 147 SSAIPQD 153 (538)
Q Consensus 147 sp~i~~~ 153 (538)
.++.+..
T Consensus 74 ta~~~~~ 80 (308)
T cd05292 74 TAGANQK 80 (308)
T ss_pred ccCCCCC
Confidence 9988654
No 306
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=65.58 E-value=6.3 Score=40.13 Aligned_cols=29 Identities=28% Similarity=0.375 Sum_probs=26.3
Q ss_pred EEEEeechhhHHHHHHHHHhCCCcEEEecC
Q 009293 78 IHFVGIGGSGLSALAKLALKQGFEVSGSDL 107 (538)
Q Consensus 78 v~vlG~G~sG~~~la~~l~~~G~~v~g~D~ 107 (538)
|.|||.|..|.++ |..|+++|.+|...|.
T Consensus 2 vvIIGaGi~G~~~-A~~La~~G~~V~l~e~ 30 (358)
T PF01266_consen 2 VVIIGAGIAGLST-AYELARRGHSVTLLER 30 (358)
T ss_dssp EEEECTSHHHHHH-HHHHHHTTSEEEEEES
T ss_pred EEEECcCHHHHHH-HHHHHHCCCeEEEEee
Confidence 6899999999986 8888999999999984
No 307
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=65.47 E-value=17 Score=33.82 Aligned_cols=31 Identities=32% Similarity=0.370 Sum_probs=26.5
Q ss_pred cCCcEEEEeC--CCCchHHHHHHHHHHHHcCCC
Q 009293 179 EKYNLIAVSG--SHGKSTTASMLAYVLKAMGDD 209 (538)
Q Consensus 179 ~~~~vI~VTG--TnGKTTTt~ml~~iL~~~G~~ 209 (538)
....+|.++| -.||||.+..|...|...|..
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~ 48 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKKLESKGYR 48 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCc
Confidence 3457999999 889999999999999877764
No 308
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=65.46 E-value=20 Score=36.78 Aligned_cols=71 Identities=20% Similarity=0.281 Sum_probs=42.9
Q ss_pred ceEEEEeechhhHHHHHHHHHhCCC--cEEEecCCCChh---HHHHHHC-----CCeEEeCCCCCCcCCCCCCCCCCEEE
Q 009293 76 GWIHFVGIGGSGLSALAKLALKQGF--EVSGSDLVWSSY---MEGLLEA-----GANLHIGHSVSNIQGNDGSRFPNAVV 145 (538)
Q Consensus 76 ~~v~vlG~G~sG~~~la~~l~~~G~--~v~g~D~~~~~~---~~~~~~~-----Ga~~~~~~~~~~~~~~~~~~~~d~vv 145 (538)
.||.|+|.|..|.++ |..|+.+|- ++...|.+...- +.++... ...+....+.+++ +.+|+||
T Consensus 4 ~Ki~IiGaG~VG~~~-a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~~~------~~adivv 76 (312)
T cd05293 4 NKVTVVGVGQVGMAC-AISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYSVT------ANSKVVI 76 (312)
T ss_pred CEEEEECCCHHHHHH-HHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHHHh------CCCCEEE
Confidence 479999999999875 666666664 577888754311 1122111 1223222333333 3689999
Q ss_pred EcCCCCCC
Q 009293 146 ASSAIPQD 153 (538)
Q Consensus 146 vsp~i~~~ 153 (538)
+..|.++.
T Consensus 77 itaG~~~k 84 (312)
T cd05293 77 VTAGARQN 84 (312)
T ss_pred ECCCCCCC
Confidence 99888764
No 309
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=65.36 E-value=6 Score=41.67 Aligned_cols=31 Identities=26% Similarity=0.260 Sum_probs=27.6
Q ss_pred ceEEEEeechhhHHHHHHHHHhCCCcEEEecC
Q 009293 76 GWIHFVGIGGSGLSALAKLALKQGFEVSGSDL 107 (538)
Q Consensus 76 ~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~ 107 (538)
.+|.|+|.|..|.++ |.+|+++|.+|++.+.
T Consensus 3 ~~VvIvGgGI~Gla~-A~~l~r~G~~v~VlE~ 33 (420)
T KOG2614|consen 3 PKVVIVGGGIVGLAT-ALALHRKGIDVVVLES 33 (420)
T ss_pred CcEEEECCcHHHHHH-HHHHHHcCCeEEEEee
Confidence 468899999999987 8999999999999983
No 310
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=65.26 E-value=11 Score=40.70 Aligned_cols=64 Identities=13% Similarity=0.068 Sum_probs=42.2
Q ss_pred ceEEEEeechhhHHHHHHHHHhCCCcEEEecCCCChhHHHHHHCCCeEEeCCCCCCcCCCCCCCCCCEEEEcCC
Q 009293 76 GWIHFVGIGGSGLSALAKLALKQGFEVSGSDLVWSSYMEGLLEAGANLHIGHSVSNIQGNDGSRFPNAVVASSA 149 (538)
Q Consensus 76 ~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~d~vvvsp~ 149 (538)
++|.|+|.|..|+.. |..|+..|.+|.++|..+.. ...+...|+....- +.+. +..|+|+..++
T Consensus 255 KtVgVIG~G~IGr~v-A~rL~a~Ga~ViV~e~dp~~-a~~A~~~G~~~~~l---eell-----~~ADIVI~atG 318 (476)
T PTZ00075 255 KTVVVCGYGDVGKGC-AQALRGFGARVVVTEIDPIC-ALQAAMEGYQVVTL---EDVV-----ETADIFVTATG 318 (476)
T ss_pred CEEEEECCCHHHHHH-HHHHHHCCCEEEEEeCCchh-HHHHHhcCceeccH---HHHH-----hcCCEEEECCC
Confidence 568999999999985 77778899999999754322 22334457654211 1111 25799988765
No 311
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=65.19 E-value=6.5 Score=39.83 Aligned_cols=29 Identities=34% Similarity=0.461 Sum_probs=24.5
Q ss_pred EEEe--CCCCchHHHHHHHHHHHHcCCCeEE
Q 009293 184 IAVS--GSHGKSTTASMLAYVLKAMGDDLTA 212 (538)
Q Consensus 184 I~VT--GTnGKTTTt~ml~~iL~~~G~~v~~ 212 (538)
|+|+ |-.|||||+.-++..|.+.|++|..
T Consensus 3 ia~~gKGGVGKTTta~nLA~~La~~G~rVLl 33 (290)
T CHL00072 3 LAVYGKGGIGKSTTSCNISIALARRGKKVLQ 33 (290)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCeEEE
Confidence 4555 6789999999999999999999644
No 312
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=65.17 E-value=5.9 Score=41.93 Aligned_cols=31 Identities=23% Similarity=0.226 Sum_probs=27.3
Q ss_pred eEEEEeechhhHHHHHHHHHhCCCcEEEecCC
Q 009293 77 WIHFVGIGGSGLSALAKLALKQGFEVSGSDLV 108 (538)
Q Consensus 77 ~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~ 108 (538)
+|+|||.|.+|.++ |..|+..|.+|.+.+..
T Consensus 20 dV~IvGaG~aGl~~-A~~L~~~G~~v~v~E~~ 50 (415)
T PRK07364 20 DVAIVGGGIVGLTL-AAALKDSGLRIALIEAQ 50 (415)
T ss_pred CEEEECcCHHHHHH-HHHHhcCCCEEEEEecC
Confidence 48899999999986 88899999999999843
No 313
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=65.01 E-value=52 Score=31.13 Aligned_cols=37 Identities=19% Similarity=0.360 Sum_probs=23.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHCCCCeeeHHHHHHHHhcCCcEEEEe
Q 009293 140 FPNAVVASSAIPQDNVEILHAKSVGVPIYKRDYWLAKLTEKYNLIAVS 187 (538)
Q Consensus 140 ~~d~vvvsp~i~~~~~~l~~a~~~gi~vi~~~~~l~~~~~~~~vI~VT 187 (538)
.+|.||+||| |.+|. .+ |+ ..+.+.+...+.|+.||.
T Consensus 45 ~pd~iviSPG--PG~P~--d~---G~----~~~~i~~~~~~~PiLGVC 81 (191)
T COG0512 45 KPDAIVISPG--PGTPK--DA---GI----SLELIRRFAGRIPILGVC 81 (191)
T ss_pred CCCEEEEcCC--CCChH--Hc---ch----HHHHHHHhcCCCCEEEEC
Confidence 5899999999 77774 11 11 024444444567888886
No 314
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=65.00 E-value=11 Score=38.02 Aligned_cols=44 Identities=25% Similarity=0.250 Sum_probs=33.6
Q ss_pred eEEEEeechhhHHHHHHHHHhCCCcEEEecCCCChhHHHHHHCCCeE
Q 009293 77 WIHFVGIGGSGLSALAKLALKQGFEVSGSDLVWSSYMEGLLEAGANL 123 (538)
Q Consensus 77 ~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~~~~~~~~~~Ga~~ 123 (538)
+|+|+|.|.-|.. +|..|+..|++|...+. .+..+.+.+.|..+
T Consensus 2 kI~IiG~G~iG~~-~a~~L~~~g~~V~~~~r--~~~~~~~~~~g~~~ 45 (305)
T PRK12921 2 RIAVVGAGAVGGT-FGGRLLEAGRDVTFLVR--PKRAKALRERGLVI 45 (305)
T ss_pred eEEEECCCHHHHH-HHHHHHHCCCceEEEec--HHHHHHHHhCCeEE
Confidence 5899999999986 57777888999999885 33455566667654
No 315
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=64.85 E-value=10 Score=38.75 Aligned_cols=48 Identities=23% Similarity=0.202 Sum_probs=30.1
Q ss_pred CceEEEEeechhhHHHHHHHHHhCC-CcEEEecCCCChhHHHHHHCCCeE
Q 009293 75 KGWIHFVGIGGSGLSALAKLALKQG-FEVSGSDLVWSSYMEGLLEAGANL 123 (538)
Q Consensus 75 ~~~v~vlG~G~sG~~~la~~l~~~G-~~v~g~D~~~~~~~~~~~~~Ga~~ 123 (538)
.++|+|+|.|..|+.++ ..|...| .+|.+.|.....-..-+.+.|+.+
T Consensus 178 ~~~V~ViGaG~iG~~~a-~~L~~~g~~~V~v~~r~~~ra~~la~~~g~~~ 226 (311)
T cd05213 178 GKKVLVIGAGEMGELAA-KHLAAKGVAEITIANRTYERAEELAKELGGNA 226 (311)
T ss_pred CCEEEEECcHHHHHHHH-HHHHHcCCCEEEEEeCCHHHHHHHHHHcCCeE
Confidence 36799999999999764 5555555 678888854322112233446643
No 316
>PRK06141 ornithine cyclodeaminase; Validated
Probab=64.62 E-value=14 Score=37.78 Aligned_cols=70 Identities=11% Similarity=-0.000 Sum_probs=42.1
Q ss_pred CCceEEEEeechhhHHHHHHHHHhC-CCcEEEecCCCC---hhHHHHHHCCCeEEeCCCCCCcCCCCCCCCCCEEEEcC
Q 009293 74 RKGWIHFVGIGGSGLSALAKLALKQ-GFEVSGSDLVWS---SYMEGLLEAGANLHIGHSVSNIQGNDGSRFPNAVVASS 148 (538)
Q Consensus 74 ~~~~v~vlG~G~sG~~~la~~l~~~-G~~v~g~D~~~~---~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~d~vvvsp 148 (538)
+.++|+|+|.|..|+..+..++..+ +.+|.+++.... .+.+++.+.|..+.......... ..+|+|+...
T Consensus 124 ~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~~~~~~~av-----~~aDIVi~aT 197 (314)
T PRK06141 124 DASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQGFDAEVVTDLEAAV-----RQADIISCAT 197 (314)
T ss_pred CCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcCCceEEeCCHHHHH-----hcCCEEEEee
Confidence 4578999999999998866555534 478999986533 34444444454333322222111 2578776643
No 317
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=64.55 E-value=6.8 Score=41.46 Aligned_cols=31 Identities=26% Similarity=0.409 Sum_probs=27.3
Q ss_pred eEEEEeechhhHHHHHHHHHhCCCcEEEecCC
Q 009293 77 WIHFVGIGGSGLSALAKLALKQGFEVSGSDLV 108 (538)
Q Consensus 77 ~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~ 108 (538)
+|.|||.|.+|.++ |..|++.|.+|.+.|..
T Consensus 3 ~vvIIGaG~~G~~~-A~~La~~g~~V~vle~~ 33 (410)
T PRK12409 3 HIAVIGAGITGVTT-AYALAQRGYQVTVFDRH 33 (410)
T ss_pred EEEEECCCHHHHHH-HHHHHHCCCeEEEEeCC
Confidence 58899999999986 88889899999999843
No 318
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=64.53 E-value=46 Score=34.29 Aligned_cols=104 Identities=13% Similarity=0.073 Sum_probs=64.5
Q ss_pred echhhHHHHHHHHHhCCCcEEEecCCCC----hhHHHHHHCCCeEEeCCCCCCcCCCCCCCCCCEEEEcCCCCCCCHHHH
Q 009293 83 IGGSGLSALAKLALKQGFEVSGSDLVWS----SYMEGLLEAGANLHIGHSVSNIQGNDGSRFPNAVVASSAIPQDNVEIL 158 (538)
Q Consensus 83 ~G~sG~~~la~~l~~~G~~v~g~D~~~~----~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~d~vvvsp~i~~~~~~l~ 158 (538)
+||++| |.-|+..|+.|.++|.+.. +..+.+.+.|+...-. ..... +..|+|+.... +...+.
T Consensus 30 ~gGspM---ArnLlkAGheV~V~Drnrsa~e~e~~e~LaeaGA~~AaS--~aEAA-----a~ADVVIL~LP---d~aaV~ 96 (341)
T TIGR01724 30 YGGSRM---AIEFAMAGHDVVLAEPNREFMSDDLWKKVEDAGVKVVSD--DKEAA-----KHGEIHVLFTP---FGKGTF 96 (341)
T ss_pred CCHHHH---HHHHHHCCCEEEEEeCChhhhhhhhhHHHHHCCCeecCC--HHHHH-----hCCCEEEEecC---CHHHHH
Confidence 366666 5666779999999986533 2334577788876332 21111 24788887642 222232
Q ss_pred HHHHCCCCeeeHHHHHHHHhcCCcEEEEeCCCCchHHHHHHHHHHHHcCCC
Q 009293 159 HAKSVGVPIYKRDYWLAKLTEKYNLIAVSGSHGKSTTASMLAYVLKAMGDD 209 (538)
Q Consensus 159 ~a~~~gi~vi~~~~~l~~~~~~~~vI~VTGTnGKTTTt~ml~~iL~~~G~~ 209 (538)
... ..++... ...++|..++|..-.++-.++..+|+..-.+
T Consensus 97 eVl---------~GLaa~L-~~GaIVID~STIsP~t~~~~~e~~l~~~r~d 137 (341)
T TIGR01724 97 SIA---------RTIIEHV-PENAVICNTCTVSPVVLYYSLEKILRLKRTD 137 (341)
T ss_pred HHH---------HHHHhcC-CCCCEEEECCCCCHHHHHHHHHHHhhcCccc
Confidence 221 1223332 3457999999999999999999999854343
No 319
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=64.51 E-value=9.3 Score=37.33 Aligned_cols=30 Identities=33% Similarity=0.488 Sum_probs=23.3
Q ss_pred EEEEeC--CCCchHHHHH-HHHHHHHcCCCeEE
Q 009293 183 LIAVSG--SHGKSTTASM-LAYVLKAMGDDLTA 212 (538)
Q Consensus 183 vI~VTG--TnGKTTTt~m-l~~iL~~~G~~v~~ 212 (538)
.|+||| -.||||.+++ +..+++..|++|.+
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~~VLv 34 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGYNVLV 34 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCceEEE
Confidence 588995 7899999999 77777776677543
No 320
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=64.38 E-value=45 Score=30.82 Aligned_cols=21 Identities=33% Similarity=0.381 Sum_probs=15.2
Q ss_pred hhcCCCceEEEEeechhhHHH
Q 009293 70 DFKNRKGWIHFVGIGGSGLSA 90 (538)
Q Consensus 70 ~~~~~~~~v~vlG~G~sG~~~ 90 (538)
+...+.++|+|+|.|.|+..|
T Consensus 25 ~~l~~a~~I~i~G~G~S~~~A 45 (179)
T TIGR03127 25 DKIIKAKRIFVAGAGRSGLVG 45 (179)
T ss_pred HHHHhCCEEEEEecCHHHHHH
Confidence 333445789999999998643
No 321
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=64.21 E-value=7 Score=41.25 Aligned_cols=31 Identities=26% Similarity=0.318 Sum_probs=27.4
Q ss_pred eEEEEeechhhHHHHHHHHHhCCCcEEEecCC
Q 009293 77 WIHFVGIGGSGLSALAKLALKQGFEVSGSDLV 108 (538)
Q Consensus 77 ~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~ 108 (538)
+|+|||.|..|+++ |..|+++|.+|...|..
T Consensus 4 dV~IVGaG~aGl~~-A~~L~~~G~~v~viE~~ 34 (390)
T TIGR02360 4 QVAIIGAGPSGLLL-GQLLHKAGIDNVILERQ 34 (390)
T ss_pred eEEEECccHHHHHH-HHHHHHCCCCEEEEECC
Confidence 58899999999986 88899999999999854
No 322
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=64.06 E-value=11 Score=34.56 Aligned_cols=32 Identities=31% Similarity=0.284 Sum_probs=26.6
Q ss_pred cEEEEeCC--CCchHHHHHHHHHHHHcCCCeEEE
Q 009293 182 NLIAVSGS--HGKSTTASMLAYVLKAMGDDLTAI 213 (538)
Q Consensus 182 ~vI~VTGT--nGKTTTt~ml~~iL~~~G~~v~~~ 213 (538)
.+|-+||. .||||.+..+.+-|.+.|.++..+
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~L 36 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLFARGIKVYLL 36 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEe
Confidence 58999995 589999999999999999876543
No 323
>PRK06753 hypothetical protein; Provisional
Probab=63.83 E-value=7.3 Score=40.53 Aligned_cols=31 Identities=39% Similarity=0.427 Sum_probs=27.2
Q ss_pred eEEEEeechhhHHHHHHHHHhCCCcEEEecCC
Q 009293 77 WIHFVGIGGSGLSALAKLALKQGFEVSGSDLV 108 (538)
Q Consensus 77 ~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~ 108 (538)
+|+|+|.|.+|.++ |..|+++|.+|...+..
T Consensus 2 ~V~IvGgG~aGl~~-A~~L~~~g~~v~v~E~~ 32 (373)
T PRK06753 2 KIAIIGAGIGGLTA-AALLQEQGHEVKVFEKN 32 (373)
T ss_pred EEEEECCCHHHHHH-HHHHHhCCCcEEEEecC
Confidence 58899999999976 88899999999998843
No 324
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=63.65 E-value=5.8 Score=38.31 Aligned_cols=27 Identities=33% Similarity=0.419 Sum_probs=22.8
Q ss_pred CCcEEEEeC--CCCchHHHHHHHHHHHHc
Q 009293 180 KYNLIAVSG--SHGKSTTASMLAYVLKAM 206 (538)
Q Consensus 180 ~~~vI~VTG--TnGKTTTt~ml~~iL~~~ 206 (538)
+..+|||+| ..||||.+..|...|...
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~~~~ 35 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQLGVE 35 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHhCcC
Confidence 346999998 689999999999999644
No 325
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=63.55 E-value=8.7 Score=41.54 Aligned_cols=27 Identities=19% Similarity=0.175 Sum_probs=23.1
Q ss_pred eCC-CCchHHHHHHHHHHHHcCCCeEEE
Q 009293 187 SGS-HGKSTTASMLAYVLKAMGDDLTAI 213 (538)
Q Consensus 187 TGT-nGKTTTt~ml~~iL~~~G~~v~~~ 213 (538)
|+| .|||+++.-|.+.|++.|++|..+
T Consensus 7 T~t~vGKT~vt~~L~~~L~~~G~~V~~f 34 (449)
T TIGR00379 7 TSSGVGKTTISTGIMKALSRRKLRVQPF 34 (449)
T ss_pred CCCCCcHHHHHHHHHHHHHHCCCceeEE
Confidence 344 799999999999999999997654
No 326
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=63.35 E-value=11 Score=34.87 Aligned_cols=29 Identities=34% Similarity=0.497 Sum_probs=25.0
Q ss_pred EEEEeC--CCCchHHHHHHHHHHHHcCCCeE
Q 009293 183 LIAVSG--SHGKSTTASMLAYVLKAMGDDLT 211 (538)
Q Consensus 183 vI~VTG--TnGKTTTt~ml~~iL~~~G~~v~ 211 (538)
+|.|.| ..||||.+..|+..|...|+++.
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~ 32 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERLEARGYEVV 32 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 688888 46899999999999999998753
No 327
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=63.33 E-value=10 Score=31.44 Aligned_cols=30 Identities=33% Similarity=0.351 Sum_probs=24.3
Q ss_pred EEEEeCCCCchHHHHHHHHHHHHcCCCeEE
Q 009293 183 LIAVSGSHGKSTTASMLAYVLKAMGDDLTA 212 (538)
Q Consensus 183 vI~VTGTnGKTTTt~ml~~iL~~~G~~v~~ 212 (538)
+++--|--||||++..++..|.+.|.++..
T Consensus 4 ~~~~kgG~Gkst~~~~la~~~~~~~~~vl~ 33 (104)
T cd02042 4 VANQKGGVGKTTTAVNLAAALARRGKRVLL 33 (104)
T ss_pred EEeCCCCcCHHHHHHHHHHHHHhCCCcEEE
Confidence 344557889999999999999998887543
No 328
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=63.28 E-value=11 Score=35.02 Aligned_cols=33 Identities=27% Similarity=0.214 Sum_probs=27.7
Q ss_pred CCcEEEEeC--CCCchHHHHHHHHHHHHcCCCeEE
Q 009293 180 KYNLIAVSG--SHGKSTTASMLAYVLKAMGDDLTA 212 (538)
Q Consensus 180 ~~~vI~VTG--TnGKTTTt~ml~~iL~~~G~~v~~ 212 (538)
..++++|+| -.||||...-+...|...|++++.
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~~g~~vg~ 39 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCARGIRPGL 39 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhhcCCeEEE
Confidence 467999999 468999999999999988988754
No 329
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=63.25 E-value=11 Score=41.21 Aligned_cols=48 Identities=25% Similarity=0.214 Sum_probs=36.8
Q ss_pred CceEEEEeechhhHHHHHHHHHhCCCcEEEecCCCChhHHHHHHCCCeEE
Q 009293 75 KGWIHFVGIGGSGLSALAKLALKQGFEVSGSDLVWSSYMEGLLEAGANLH 124 (538)
Q Consensus 75 ~~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~~~~~~~~~~Ga~~~ 124 (538)
..+|+|+|.|..|+.++ ..++..|++|.+.|.+.. -.+.+.+.|+...
T Consensus 165 g~kVlViGaG~iGL~Ai-~~Ak~lGA~V~a~D~~~~-rle~aeslGA~~v 212 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAI-GAAGSLGAIVRAFDTRPE-VAEQVESMGAEFL 212 (509)
T ss_pred CCEEEEECCcHHHHHHH-HHHHHCCCEEEEEeCCHH-HHHHHHHcCCeEE
Confidence 35699999999999985 455678999999996542 3456777899854
No 330
>PRK07588 hypothetical protein; Provisional
Probab=63.15 E-value=7.5 Score=40.82 Aligned_cols=30 Identities=20% Similarity=0.154 Sum_probs=26.6
Q ss_pred eEEEEeechhhHHHHHHHHHhCCCcEEEecC
Q 009293 77 WIHFVGIGGSGLSALAKLALKQGFEVSGSDL 107 (538)
Q Consensus 77 ~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~ 107 (538)
+|.|||.|.+|.++ |..|+++|.+|...+.
T Consensus 2 ~V~IVGgG~aGl~~-A~~L~~~G~~v~v~E~ 31 (391)
T PRK07588 2 KVAISGAGIAGPTL-AYWLRRYGHEPTLIER 31 (391)
T ss_pred eEEEECccHHHHHH-HHHHHHCCCceEEEeC
Confidence 48899999999986 7888999999999884
No 331
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=63.10 E-value=12 Score=36.54 Aligned_cols=32 Identities=38% Similarity=0.477 Sum_probs=25.6
Q ss_pred cEEEEe---CCCCchHHHHHHHHHHHHcCCCeEEE
Q 009293 182 NLIAVS---GSHGKSTTASMLAYVLKAMGDDLTAI 213 (538)
Q Consensus 182 ~vI~VT---GTnGKTTTt~ml~~iL~~~G~~v~~~ 213 (538)
|+|.+. |=.||||++.+|+..|.+.|.+|..+
T Consensus 2 ~vItf~s~KGGaGKTT~~~~LAs~la~~G~~V~lI 36 (231)
T PF07015_consen 2 PVITFASSKGGAGKTTAAMALASELAARGARVALI 36 (231)
T ss_pred CeEEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEE
Confidence 455554 67799999999999999999886543
No 332
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=63.07 E-value=23 Score=34.07 Aligned_cols=85 Identities=19% Similarity=0.170 Sum_probs=48.9
Q ss_pred ceEEEEeechhhHHHHHHHHHhCCCcEEEecCCCChhHHHHHHC-CCeEEeC-CCCCCcCCCCCCCCCCEEEEcCCCCCC
Q 009293 76 GWIHFVGIGGSGLSALAKLALKQGFEVSGSDLVWSSYMEGLLEA-GANLHIG-HSVSNIQGNDGSRFPNAVVASSAIPQD 153 (538)
Q Consensus 76 ~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~~~~~~~~~~-Ga~~~~~-~~~~~~~~~~~~~~~d~vvvsp~i~~~ 153 (538)
++|+|+|.|..|.-= +++|...|++|++......+.+..+.+. ++...-. .+..++ ..+++|++...-+.-
T Consensus 13 k~VlvvGgG~va~rK-a~~ll~~ga~v~Vvs~~~~~el~~~~~~~~i~~~~~~~~~~~~------~~~~lviaAt~d~~l 85 (210)
T COG1648 13 KKVLVVGGGSVALRK-ARLLLKAGADVTVVSPEFEPELKALIEEGKIKWIEREFDAEDL------DDAFLVIAATDDEEL 85 (210)
T ss_pred CEEEEECCCHHHHHH-HHHHHhcCCEEEEEcCCccHHHHHHHHhcCcchhhcccChhhh------cCceEEEEeCCCHHH
Confidence 679999999888654 5777789999998764443334444444 4333222 111122 247888887543332
Q ss_pred CH-HHHHHHHCCCCe
Q 009293 154 NV-EILHAKSVGVPI 167 (538)
Q Consensus 154 ~~-~l~~a~~~gi~v 167 (538)
+. ....|++.++++
T Consensus 86 n~~i~~~a~~~~i~v 100 (210)
T COG1648 86 NERIAKAARERRILV 100 (210)
T ss_pred HHHHHHHHHHhCCce
Confidence 33 334455666655
No 333
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=62.92 E-value=26 Score=35.40 Aligned_cols=90 Identities=12% Similarity=0.067 Sum_probs=53.7
Q ss_pred eEEEEeechhhHHHHHHHHHhCCCcEEE-ecCCCCh-hHHHHHHCCCeEEeCCCCCCcCCCCCCCCCCEEEEcCCCCCCC
Q 009293 77 WIHFVGIGGSGLSALAKLALKQGFEVSG-SDLVWSS-YMEGLLEAGANLHIGHSVSNIQGNDGSRFPNAVVASSAIPQDN 154 (538)
Q Consensus 77 ~v~vlG~G~sG~~~la~~l~~~G~~v~g-~D~~~~~-~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~d~vvvsp~i~~~~ 154 (538)
+|.|||.|..|..-+..++..++.++.+ .|.+.+. -...+.+.|+.......+.-+.. ...|+|+...+-....
T Consensus 3 rVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A~~~Gi~~~~~~~e~ll~~----~dIDaV~iaTp~~~H~ 78 (285)
T TIGR03215 3 KVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARARELGVKTSAEGVDGLLAN----PDIDIVFDATSAKAHA 78 (285)
T ss_pred EEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHHHHCCCCEEECCHHHHhcC----CCCCEEEECCCcHHHH
Confidence 5889999999987656677777777774 4544331 23445667877654321111111 1478888754322222
Q ss_pred HHHHHHHHCCCCeeeH
Q 009293 155 VEILHAKSVGVPIYKR 170 (538)
Q Consensus 155 ~~l~~a~~~gi~vi~~ 170 (538)
....++.+.|+.++.+
T Consensus 79 e~a~~al~aGk~VIde 94 (285)
T TIGR03215 79 RHARLLAELGKIVIDL 94 (285)
T ss_pred HHHHHHHHcCCEEEEC
Confidence 3455667889988665
No 334
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=62.64 E-value=7 Score=42.15 Aligned_cols=32 Identities=31% Similarity=0.436 Sum_probs=26.4
Q ss_pred CceEEEEeechhhHHHHHHHHHhCCCcEEEecC
Q 009293 75 KGWIHFVGIGGSGLSALAKLALKQGFEVSGSDL 107 (538)
Q Consensus 75 ~~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~ 107 (538)
+++|.|||+|.||.++ |+.|...|.++.+...
T Consensus 6 ~~~vaIIGAG~sGL~~-ar~l~~~g~~v~vfEr 37 (448)
T KOG1399|consen 6 SKDVAVIGAGPAGLAA-ARELLREGHEVVVFER 37 (448)
T ss_pred CCceEEECcchHHHHH-HHHHHHCCCCceEEEe
Confidence 4668999999999998 5666668999998864
No 335
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=62.23 E-value=39 Score=34.37 Aligned_cols=123 Identities=19% Similarity=0.149 Sum_probs=66.1
Q ss_pred ceEEEEeechhhHHHHHHHHHh----CCCcEEEecCCCChhHHHHHHCCCeEEeC--CCCCCcCCCCCCCCCCEEEEcCC
Q 009293 76 GWIHFVGIGGSGLSALAKLALK----QGFEVSGSDLVWSSYMEGLLEAGANLHIG--HSVSNIQGNDGSRFPNAVVASSA 149 (538)
Q Consensus 76 ~~v~vlG~G~sG~~~la~~l~~----~G~~v~g~D~~~~~~~~~~~~~Ga~~~~~--~~~~~~~~~~~~~~~d~vvvsp~ 149 (538)
++|.|||-+..---.+|.+|.. +|+.|+....... .+.++. +.+.++++ -.+..+.. ++. .+..+|+..|
T Consensus 160 k~vvViGrS~iVG~Pla~lL~~~~~~~~atVt~~hs~t~-~l~~~~-~~ADIvI~Avg~~~li~~-~~v-k~GavVIDVg 235 (295)
T PRK14174 160 KHCVVVGRSNIVGKPMANLMLQKLKESNCTVTICHSATK-DIPSYT-RQADILIAAIGKARFITA-DMV-KPGAVVIDVG 235 (295)
T ss_pred CEEEEECCCCcchHHHHHHHHhccccCCCEEEEEeCCch-hHHHHH-HhCCEEEEecCccCccCH-HHc-CCCCEEEEee
Confidence 5688999886544457788776 6899887764322 233332 23344332 22221211 111 3567888888
Q ss_pred CCCC-CHHHHHHHHCCCCeeeHHHHHHHHhcCCcEEEEeCCCCchHHHHHHHHHHHHc
Q 009293 150 IPQD-NVEILHAKSVGVPIYKRDYWLAKLTEKYNLIAVSGSHGKSTTASMLAYVLKAM 206 (538)
Q Consensus 150 i~~~-~~~l~~a~~~gi~vi~~~~~l~~~~~~~~vI~VTGTnGKTTTt~ml~~iL~~~ 206 (538)
+... .+ ..+.|..+....++-.-......+-=|-|=-|.-|++.++.++++.+
T Consensus 236 i~~~~~~----~~~~g~kl~GDVd~~~v~~~a~~iTPVPGGVGp~T~a~L~~Nl~~a~ 289 (295)
T PRK14174 236 INRIEDP----STKSGYRLVGDVDYEGVSAKASAITPVPGGVGPMTIAMLLKNTLQSF 289 (295)
T ss_pred ccccccc----cccCCCceECCcCHHHHHhhccEecCCCCCchHHHHHHHHHHHHHHH
Confidence 7652 11 01112234444342211111222333447799999999999999875
No 336
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=62.07 E-value=67 Score=32.46 Aligned_cols=33 Identities=15% Similarity=0.202 Sum_probs=26.2
Q ss_pred ceEEEEeechhhHHHHHHHHHhCC-CcEEEecCCC
Q 009293 76 GWIHFVGIGGSGLSALAKLALKQG-FEVSGSDLVW 109 (538)
Q Consensus 76 ~~v~vlG~G~sG~~~la~~l~~~G-~~v~g~D~~~ 109 (538)
++++++|.||+++++ +.-|+..| .++++.+...
T Consensus 127 ~~vlilGAGGAarAv-~~aL~~~g~~~i~V~NRt~ 160 (283)
T COG0169 127 KRVLILGAGGAARAV-AFALAEAGAKRITVVNRTR 160 (283)
T ss_pred CEEEEECCcHHHHHH-HHHHHHcCCCEEEEEeCCH
Confidence 569999999999987 56667788 5788887643
No 337
>PRK10262 thioredoxin reductase; Provisional
Probab=62.03 E-value=8.5 Score=39.28 Aligned_cols=32 Identities=19% Similarity=0.260 Sum_probs=26.7
Q ss_pred CCceEEEEeechhhHHHHHHHHHhCCCcEEEec
Q 009293 74 RKGWIHFVGIGGSGLSALAKLALKQGFEVSGSD 106 (538)
Q Consensus 74 ~~~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D 106 (538)
..++|+|||.|.+|++| |..|+.+|.++...+
T Consensus 5 ~~~~vvIIGgGpaGl~a-A~~l~~~g~~~~~ie 36 (321)
T PRK10262 5 KHSKLLILGSGPAGYTA-AVYAARANLQPVLIT 36 (321)
T ss_pred CcCCEEEECCCHHHHHH-HHHHHHCCCCeEEEE
Confidence 34668999999999998 777788999988776
No 338
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=62.01 E-value=8 Score=40.61 Aligned_cols=30 Identities=33% Similarity=0.140 Sum_probs=26.7
Q ss_pred eEEEEeechhhHHHHHHHHHhCCCcEEEecC
Q 009293 77 WIHFVGIGGSGLSALAKLALKQGFEVSGSDL 107 (538)
Q Consensus 77 ~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~ 107 (538)
+|+|+|.|..|.++ |..|+++|.+|...|.
T Consensus 5 dv~IvGgG~aGl~~-A~~L~~~G~~v~l~E~ 34 (384)
T PRK08849 5 DIAVVGGGMVGAAT-ALGFAKQGRSVAVIEG 34 (384)
T ss_pred cEEEECcCHHHHHH-HHHHHhCCCcEEEEcC
Confidence 48899999999986 7888999999999984
No 339
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=61.99 E-value=53 Score=31.28 Aligned_cols=34 Identities=21% Similarity=0.121 Sum_probs=28.1
Q ss_pred hcCCCceEEEEeechhhHHHHHHHHHhCCCcEEEec
Q 009293 71 FKNRKGWIHFVGIGGSGLSALAKLALKQGFEVSGSD 106 (538)
Q Consensus 71 ~~~~~~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D 106 (538)
+.+ ++|.|||-+..---.||.+|..+|+.|+..|
T Consensus 60 l~G--K~vvVIGrS~iVGkPla~lL~~~~AtVti~~ 93 (197)
T cd01079 60 LYG--KTITIINRSEVVGRPLAALLANDGARVYSVD 93 (197)
T ss_pred CCC--CEEEEECCCccchHHHHHHHHHCCCEEEEEe
Confidence 455 5688999987666678999999999999986
No 340
>PRK12831 putative oxidoreductase; Provisional
Probab=61.99 E-value=8.2 Score=41.88 Aligned_cols=31 Identities=26% Similarity=0.379 Sum_probs=27.6
Q ss_pred CceEEEEeechhhHHHHHHHHHhCCCcEEEec
Q 009293 75 KGWIHFVGIGGSGLSALAKLALKQGFEVSGSD 106 (538)
Q Consensus 75 ~~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D 106 (538)
.++|+|||.|.+|++| |..|+.+|++|...|
T Consensus 140 ~~~V~IIG~GpAGl~a-A~~l~~~G~~V~v~e 170 (464)
T PRK12831 140 GKKVAVIGSGPAGLTC-AGDLAKMGYDVTIFE 170 (464)
T ss_pred CCEEEEECcCHHHHHH-HHHHHhCCCeEEEEe
Confidence 4569999999999997 788888999999987
No 341
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=61.95 E-value=9.3 Score=38.52 Aligned_cols=33 Identities=24% Similarity=0.241 Sum_probs=27.9
Q ss_pred ceEEEEeechhhHHHHHHHHHhCCCcEEEecCCC
Q 009293 76 GWIHFVGIGGSGLSALAKLALKQGFEVSGSDLVW 109 (538)
Q Consensus 76 ~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~ 109 (538)
++|.|||.|.-|.+ +|..|+..|++|.+.|.+.
T Consensus 4 ~kIaViGaG~mG~~-iA~~la~~G~~V~l~d~~~ 36 (287)
T PRK08293 4 KNVTVAGAGVLGSQ-IAFQTAFHGFDVTIYDISD 36 (287)
T ss_pred cEEEEECCCHHHHH-HHHHHHhcCCeEEEEeCCH
Confidence 56999999998876 5778888999999999653
No 342
>PRK06126 hypothetical protein; Provisional
Probab=61.90 E-value=7.8 Score=42.86 Aligned_cols=32 Identities=22% Similarity=0.117 Sum_probs=28.3
Q ss_pred ceEEEEeechhhHHHHHHHHHhCCCcEEEecCC
Q 009293 76 GWIHFVGIGGSGLSALAKLALKQGFEVSGSDLV 108 (538)
Q Consensus 76 ~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~ 108 (538)
.+|+|||.|.+|+++ |.+|+.+|.+|...|..
T Consensus 8 ~~VlIVGaGpaGL~~-Al~La~~G~~v~viEr~ 39 (545)
T PRK06126 8 TPVLIVGGGPVGLAL-ALDLGRRGVDSILVERK 39 (545)
T ss_pred CCEEEECCCHHHHHH-HHHHHHCCCcEEEEeCC
Confidence 458999999999985 89999999999999854
No 343
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=61.79 E-value=6.6 Score=41.53 Aligned_cols=31 Identities=23% Similarity=0.321 Sum_probs=21.7
Q ss_pred cEEEEeCCC--CchHHHHHHHHHHHH----cCCCeEE
Q 009293 182 NLIAVSGSH--GKSTTASMLAYVLKA----MGDDLTA 212 (538)
Q Consensus 182 ~vI~VTGTn--GKTTTt~ml~~iL~~----~G~~v~~ 212 (538)
.+|.+.|.+ |||||+.-+++.+.. .|.+|..
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~l 211 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKI 211 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEE
Confidence 466666544 799999999998874 3566543
No 344
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=61.78 E-value=16 Score=32.63 Aligned_cols=69 Identities=19% Similarity=0.224 Sum_probs=42.3
Q ss_pred eEEEEee-chhhHHHHHHHHHhCC--CcEEEecCCCCh---hH---HHH-HHCCCeEEeC-CCCCCcCCCCCCCCCCEEE
Q 009293 77 WIHFVGI-GGSGLSALAKLALKQG--FEVSGSDLVWSS---YM---EGL-LEAGANLHIG-HSVSNIQGNDGSRFPNAVV 145 (538)
Q Consensus 77 ~v~vlG~-G~sG~~~la~~l~~~G--~~v~g~D~~~~~---~~---~~~-~~~Ga~~~~~-~~~~~~~~~~~~~~~d~vv 145 (538)
||.|+|. |..|.+. |.+|...| .++...|.+... .+ .++ ...+....+. ...+.+ +..|+||
T Consensus 2 KV~IiGa~G~VG~~~-a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~------~~aDivv 74 (141)
T PF00056_consen 2 KVAIIGAAGNVGSTL-ALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEAL------KDADIVV 74 (141)
T ss_dssp EEEEESTTSHHHHHH-HHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGG------TTESEEE
T ss_pred EEEEECCCChHHHHH-HHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhccccccccccccccc------ccccEEE
Confidence 6899999 9999874 67776665 468888876321 11 111 1223333333 333333 3689999
Q ss_pred EcCCCCC
Q 009293 146 ASSAIPQ 152 (538)
Q Consensus 146 vsp~i~~ 152 (538)
+.-|.|+
T Consensus 75 itag~~~ 81 (141)
T PF00056_consen 75 ITAGVPR 81 (141)
T ss_dssp ETTSTSS
T ss_pred Eeccccc
Confidence 9888764
No 345
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=61.76 E-value=7.4 Score=41.84 Aligned_cols=30 Identities=27% Similarity=0.297 Sum_probs=26.3
Q ss_pred eEEEEeechhhHHHHHHHHHhCCCcEEEecC
Q 009293 77 WIHFVGIGGSGLSALAKLALKQGFEVSGSDL 107 (538)
Q Consensus 77 ~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~ 107 (538)
+|.|||.|.+|++| |..|+.+|.+|...+.
T Consensus 1 ~v~IiGaG~aGl~a-A~~L~~~G~~v~vlE~ 30 (453)
T TIGR02731 1 RVAIAGAGLAGLSC-AKYLADAGHTPIVLEA 30 (453)
T ss_pred CEEEECCCHHHHHH-HHHHHHCCCcEEEEec
Confidence 37899999999997 7888999999998873
No 346
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=61.61 E-value=9.8 Score=38.75 Aligned_cols=34 Identities=24% Similarity=0.335 Sum_probs=27.7
Q ss_pred CceEEEEeechhhHHHHHHHHHhCCCcEEEecCCC
Q 009293 75 KGWIHFVGIGGSGLSALAKLALKQGFEVSGSDLVW 109 (538)
Q Consensus 75 ~~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~ 109 (538)
.++|.|||.|.-|.+ +|..|+..|++|.++|.+.
T Consensus 4 ~~~I~vIGaG~mG~~-iA~~l~~~g~~V~~~d~~~ 37 (311)
T PRK06130 4 IQNLAIIGAGTMGSG-IAALFARKGLQVVLIDVME 37 (311)
T ss_pred ccEEEEECCCHHHHH-HHHHHHhCCCeEEEEECCH
Confidence 356999999999987 4666777999999999653
No 347
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=61.46 E-value=10 Score=36.70 Aligned_cols=23 Identities=48% Similarity=0.667 Sum_probs=20.0
Q ss_pred EEEEeCCC--CchHHHHHHHHHHHH
Q 009293 183 LIAVSGSH--GKSTTASMLAYVLKA 205 (538)
Q Consensus 183 vI~VTGTn--GKTTTt~ml~~iL~~ 205 (538)
+|||+|.| ||||++..|...|+.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~ 25 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSR 25 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhh
Confidence 58999965 799999999999975
No 348
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=61.39 E-value=13 Score=40.37 Aligned_cols=50 Identities=24% Similarity=0.336 Sum_probs=38.9
Q ss_pred ceEEEEeechhhHHHHHHHHHhCCCcEEEecCCC----------------Ch----hHHHHHHCCCeEEeC
Q 009293 76 GWIHFVGIGGSGLSALAKLALKQGFEVSGSDLVW----------------SS----YMEGLLEAGANLHIG 126 (538)
Q Consensus 76 ~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~----------------~~----~~~~~~~~Ga~~~~~ 126 (538)
++|.|||.|..|.++ |..|+..|+.|++++... .+ .++.+.+.|+.+.++
T Consensus 124 ~~VaviGaGPAGl~~-a~~L~~~G~~Vtv~e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~Gv~~~~~ 193 (457)
T COG0493 124 KKVAVIGAGPAGLAA-ADDLSRAGHDVTVFERVALDGGLLLYGIPDFKLPKDILDRRLELLERSGVEFKLN 193 (457)
T ss_pred CEEEEECCCchHhhh-HHHHHhCCCeEEEeCCcCCCceeEEecCchhhccchHHHHHHHHHHHcCeEEEEc
Confidence 569999999999987 788889999999998541 11 244566779888765
No 349
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=61.36 E-value=10 Score=35.35 Aligned_cols=29 Identities=31% Similarity=0.280 Sum_probs=24.9
Q ss_pred eEEEEeechhhHHHHHHHHHhCCCcEEEec
Q 009293 77 WIHFVGIGGSGLSALAKLALKQGFEVSGSD 106 (538)
Q Consensus 77 ~v~vlG~G~sG~~~la~~l~~~G~~v~g~D 106 (538)
+|+|||.|-+|++| |..|+..|.++...+
T Consensus 1 ~vvIIGgG~aGl~a-A~~l~~~~~~v~ii~ 29 (201)
T PF07992_consen 1 DVVIIGGGPAGLSA-ALELARPGAKVLIIE 29 (201)
T ss_dssp EEEEESSSHHHHHH-HHHHHHTTSEEEEES
T ss_pred CEEEEecHHHHHHH-HHHHhcCCCeEEEEe
Confidence 47899999999998 666678999999886
No 350
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=61.29 E-value=9.3 Score=36.26 Aligned_cols=45 Identities=27% Similarity=0.356 Sum_probs=28.4
Q ss_pred ceEEEEeechhhHHHHHHHHHhCCCcEEEecCCCC--hhHHH-HHHCCCeE
Q 009293 76 GWIHFVGIGGSGLSALAKLALKQGFEVSGSDLVWS--SYMEG-LLEAGANL 123 (538)
Q Consensus 76 ~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~--~~~~~-~~~~Ga~~ 123 (538)
++++=+| ||.||-+ .||+.+|++|++.|.... +.+.+ +.+.+..+
T Consensus 32 g~~LDlg-cG~GRNa--lyLA~~G~~VtAvD~s~~al~~l~~~a~~~~l~i 79 (192)
T PF03848_consen 32 GKALDLG-CGEGRNA--LYLASQGFDVTAVDISPVALEKLQRLAEEEGLDI 79 (192)
T ss_dssp SEEEEES--TTSHHH--HHHHHTT-EEEEEESSHHHHHHHHHHHHHTT-TE
T ss_pred CcEEEcC-CCCcHHH--HHHHHCCCeEEEEECCHHHHHHHHHHHhhcCcee
Confidence 5676676 4678874 899999999999996543 22232 33456654
No 351
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=61.22 E-value=22 Score=30.00 Aligned_cols=49 Identities=24% Similarity=0.291 Sum_probs=35.7
Q ss_pred EEEEeechhhHHHHHHHHHhCCCcEEEecCCCChhHHHHHHCCCeEEeCCC
Q 009293 78 IHFVGIGGSGLSALAKLALKQGFEVSGSDLVWSSYMEGLLEAGANLHIGHS 128 (538)
Q Consensus 78 v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~~~~~~~~~~Ga~~~~~~~ 128 (538)
|.|+|.|..|+.. ++.|...|.+|.+.|.++ +..+.+.+.|..++.|+.
T Consensus 1 vvI~G~g~~~~~i-~~~L~~~~~~vvvid~d~-~~~~~~~~~~~~~i~gd~ 49 (116)
T PF02254_consen 1 VVIIGYGRIGREI-AEQLKEGGIDVVVIDRDP-ERVEELREEGVEVIYGDA 49 (116)
T ss_dssp EEEES-SHHHHHH-HHHHHHTTSEEEEEESSH-HHHHHHHHTTSEEEES-T
T ss_pred eEEEcCCHHHHHH-HHHHHhCCCEEEEEECCc-HHHHHHHhcccccccccc
Confidence 4689999999986 566666777999998543 346778889988887743
No 352
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=61.21 E-value=13 Score=34.74 Aligned_cols=30 Identities=33% Similarity=0.520 Sum_probs=26.2
Q ss_pred cEEEEeCC--CCchHHHHHHHHHHHHcCCCeE
Q 009293 182 NLIAVSGS--HGKSTTASMLAYVLKAMGDDLT 211 (538)
Q Consensus 182 ~vI~VTGT--nGKTTTt~ml~~iL~~~G~~v~ 211 (538)
++|.|.|. .||||.+.+|++-|...|+++.
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~l~~~g~~v~ 35 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKLLQENGYDVL 35 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 58999994 6899999999999999998754
No 353
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=61.20 E-value=14 Score=29.83 Aligned_cols=32 Identities=25% Similarity=0.192 Sum_probs=24.4
Q ss_pred CceEEEEeechhhHHHHHHHHHhCCCcEEEec
Q 009293 75 KGWIHFVGIGGSGLSALAKLALKQGFEVSGSD 106 (538)
Q Consensus 75 ~~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D 106 (538)
.+++.|+|.|..|++.+..++...+.++..+|
T Consensus 23 ~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~ 54 (86)
T cd05191 23 GKTVVVLGAGEVGKGIAKLLADEGGKKVVLCD 54 (86)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEc
Confidence 36799999999999875555443378888888
No 354
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=60.99 E-value=12 Score=39.91 Aligned_cols=32 Identities=22% Similarity=0.218 Sum_probs=26.1
Q ss_pred ceEEEEeechhhHHHHHHHHHhCC-CcEEEecCC
Q 009293 76 GWIHFVGIGGSGLSALAKLALKQG-FEVSGSDLV 108 (538)
Q Consensus 76 ~~v~vlG~G~sG~~~la~~l~~~G-~~v~g~D~~ 108 (538)
++|+|+|.|..|+.+ +..|+..| .+|.+.+..
T Consensus 181 ~~VlViGaG~iG~~~-a~~L~~~G~~~V~v~~rs 213 (417)
T TIGR01035 181 KKALLIGAGEMGELV-AKHLLRKGVGKILIANRT 213 (417)
T ss_pred CEEEEECChHHHHHH-HHHHHHCCCCEEEEEeCC
Confidence 579999999999986 56666688 789998854
No 355
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=60.92 E-value=8.6 Score=38.30 Aligned_cols=29 Identities=24% Similarity=0.325 Sum_probs=25.5
Q ss_pred eEEEEeechhhHHHHHHHHHhCCCcEEEec
Q 009293 77 WIHFVGIGGSGLSALAKLALKQGFEVSGSD 106 (538)
Q Consensus 77 ~v~vlG~G~sG~~~la~~l~~~G~~v~g~D 106 (538)
+|.|||.|.+|+++ |..|+.+|.+|...|
T Consensus 2 dvvIIG~G~aGl~a-A~~l~~~g~~v~lie 30 (300)
T TIGR01292 2 DVIIIGAGPAGLTA-AIYAARANLKTLIIE 30 (300)
T ss_pred cEEEECCCHHHHHH-HHHHHHCCCCEEEEe
Confidence 37899999999997 677788999999998
No 356
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=60.90 E-value=13 Score=39.78 Aligned_cols=33 Identities=33% Similarity=0.423 Sum_probs=27.5
Q ss_pred CcEEEEeCC--CCchHHHHHHHHHHHHcCCCeEEE
Q 009293 181 YNLIAVSGS--HGKSTTASMLAYVLKAMGDDLTAI 213 (538)
Q Consensus 181 ~~vI~VTGT--nGKTTTt~ml~~iL~~~G~~v~~~ 213 (538)
..+|.++|- .|||||+.-|+..|+..|++|...
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV 134 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLV 134 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE
Confidence 458888884 579999999999999999987543
No 357
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=60.84 E-value=20 Score=42.81 Aligned_cols=92 Identities=12% Similarity=0.019 Sum_probs=47.4
Q ss_pred CCceEEEEeechhhHHHHHHHHHhCCCc-------------EEEecCCCChhHHHHHH-C-CCeEEeC--CCCCCcCCCC
Q 009293 74 RKGWIHFVGIGGSGLSALAKLALKQGFE-------------VSGSDLVWSSYMEGLLE-A-GANLHIG--HSVSNIQGND 136 (538)
Q Consensus 74 ~~~~v~vlG~G~sG~~~la~~l~~~G~~-------------v~g~D~~~~~~~~~~~~-~-Ga~~~~~--~~~~~~~~~~ 136 (538)
..++|+|||.|..|...+..+....+++ |.+.|.... .++.+.+ . ++..+.. .+.+.+..
T Consensus 568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~-~a~~la~~~~~~~~v~lDv~D~e~L~~-- 644 (1042)
T PLN02819 568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLK-DAKETVEGIENAEAVQLDVSDSESLLK-- 644 (1042)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHH-HHHHHHHhcCCCceEEeecCCHHHHHH--
Confidence 3567999999999997654444444444 777775432 1223322 1 4332221 22222210
Q ss_pred CCCCCCEEEEc-CCCCCCCHHH-HHHHHCCCCeeeH
Q 009293 137 GSRFPNAVVAS-SAIPQDNVEI-LHAKSVGVPIYKR 170 (538)
Q Consensus 137 ~~~~~d~vvvs-p~i~~~~~~l-~~a~~~gi~vi~~ 170 (538)
..+..|+||.. |. ..|..+ .+|.+.|+.++.+
T Consensus 645 ~v~~~DaVIsalP~--~~H~~VAkaAieaGkHvv~e 678 (1042)
T PLN02819 645 YVSQVDVVISLLPA--SCHAVVAKACIELKKHLVTA 678 (1042)
T ss_pred hhcCCCEEEECCCc--hhhHHHHHHHHHcCCCEEEC
Confidence 11247887763 32 345443 3445666666554
No 358
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=60.80 E-value=8.5 Score=40.49 Aligned_cols=30 Identities=27% Similarity=0.335 Sum_probs=26.6
Q ss_pred EEEEeechhhHHHHHHHHHhCCCcEEEecCC
Q 009293 78 IHFVGIGGSGLSALAKLALKQGFEVSGSDLV 108 (538)
Q Consensus 78 v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~ 108 (538)
|+|||.|.+|.++ |..|+..|.+|...|..
T Consensus 3 VvIVGaGpAG~~a-A~~La~~G~~V~l~E~~ 32 (388)
T TIGR02023 3 VAVIGGGPSGATA-AETLARAGIETILLERA 32 (388)
T ss_pred EEEECCCHHHHHH-HHHHHhCCCcEEEEECC
Confidence 7899999999986 78889999999999843
No 359
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=60.70 E-value=13 Score=33.14 Aligned_cols=30 Identities=37% Similarity=0.362 Sum_probs=24.2
Q ss_pred cEEEEeC---CCCchHHHHHHHHHHHHcCCCeE
Q 009293 182 NLIAVSG---SHGKSTTASMLAYVLKAMGDDLT 211 (538)
Q Consensus 182 ~vI~VTG---TnGKTTTt~ml~~iL~~~G~~v~ 211 (538)
++|+|+| ..||||++.-++..|.+.|.+|.
T Consensus 1 k~i~v~s~~~g~G~t~~a~~lA~~la~~~~~Vl 33 (157)
T PF13614_consen 1 KVIAVWSPKGGVGKTTLALNLAAALARKGKKVL 33 (157)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTT-EE
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHhcCCCeE
Confidence 4677776 66999999999999999998743
No 360
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=60.64 E-value=9.7 Score=41.24 Aligned_cols=31 Identities=26% Similarity=0.355 Sum_probs=27.8
Q ss_pred eEEEEeechhhHHHHHHHHHhCCCcEEEecCC
Q 009293 77 WIHFVGIGGSGLSALAKLALKQGFEVSGSDLV 108 (538)
Q Consensus 77 ~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~ 108 (538)
+|.|+|.|-.|++| |..|+..|++|+....+
T Consensus 2 rVai~GaG~AgL~~-a~~La~~g~~vt~~ea~ 32 (485)
T COG3349 2 RVAIAGAGLAGLAA-AYELADAGYDVTLYEAR 32 (485)
T ss_pred eEEEEcccHHHHHH-HHHHHhCCCceEEEecc
Confidence 58899999999998 89999999999988754
No 361
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=60.61 E-value=8.3 Score=40.07 Aligned_cols=30 Identities=27% Similarity=0.439 Sum_probs=26.6
Q ss_pred eEEEEeechhhHHHHHHHHHhCCCcEEEecC
Q 009293 77 WIHFVGIGGSGLSALAKLALKQGFEVSGSDL 107 (538)
Q Consensus 77 ~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~ 107 (538)
.|.|||.|..|.++ |..|+++|.+|...|.
T Consensus 5 dv~IIGgGi~G~s~-A~~L~~~g~~V~lie~ 34 (376)
T PRK11259 5 DVIVIGLGSMGSAA-GYYLARRGLRVLGLDR 34 (376)
T ss_pred cEEEECCCHHHHHH-HHHHHHCCCeEEEEec
Confidence 37899999999986 8899999999999983
No 362
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=60.56 E-value=42 Score=38.65 Aligned_cols=33 Identities=21% Similarity=0.160 Sum_probs=28.2
Q ss_pred ceEEEEeechhhHHHHHHHHHhCCCcEEEecCCC
Q 009293 76 GWIHFVGIGGSGLSALAKLALKQGFEVSGSDLVW 109 (538)
Q Consensus 76 ~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~ 109 (538)
++|.|||.|.-|.+ +|..++..|++|...|.+.
T Consensus 314 ~~v~ViGaG~mG~g-IA~~~a~~G~~V~l~d~~~ 346 (715)
T PRK11730 314 KQAAVLGAGIMGGG-IAYQSASKGVPVIMKDINQ 346 (715)
T ss_pred ceEEEECCchhHHH-HHHHHHhCCCeEEEEeCCH
Confidence 57999999988886 5778888999999999764
No 363
>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase. Also called lipid-A 4'-kinase. This essential gene encodes an enzyme in the pathway of lipid A biosynthesis in Gram-negative organisms. A single copy of this protein is found in Gram-negative bacteria. PSI-BLAST converges on this set of apparent orthologs without identifying any other homologs.
Probab=60.52 E-value=15 Score=37.75 Aligned_cols=35 Identities=26% Similarity=0.355 Sum_probs=29.7
Q ss_pred CCcEEEEe----CCCCchHHHHHHHHHHHHcCCCeEEEe
Q 009293 180 KYNLIAVS----GSHGKSTTASMLAYVLKAMGDDLTAIV 214 (538)
Q Consensus 180 ~~~vI~VT----GTnGKTTTt~ml~~iL~~~G~~v~~~~ 214 (538)
..|+|.|- |=.|||.++.+|+..|++.|++++.+.
T Consensus 27 ~vPVIsVGNitvGGTGKTP~v~~La~~l~~~G~~~~IlS 65 (311)
T TIGR00682 27 PVPVVIVGNLSVGGTGKTPVVVWLAELLKDRGLRVGVLS 65 (311)
T ss_pred CCCEEEEeccccCCcChHHHHHHHHHHHHHCCCEEEEEC
Confidence 46788874 889999999999999999999976543
No 364
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=60.39 E-value=7.1 Score=42.65 Aligned_cols=30 Identities=23% Similarity=0.228 Sum_probs=25.5
Q ss_pred EEEEeechhhHHHHHHHHHhCCCcEEEecCC
Q 009293 78 IHFVGIGGSGLSALAKLALKQGFEVSGSDLV 108 (538)
Q Consensus 78 v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~ 108 (538)
|.|||.|.+|++| |.+|++.|++|.+.+..
T Consensus 1 vvVIGaG~~GL~a-A~~La~~G~~V~VlE~~ 30 (502)
T TIGR02734 1 AVVIGAGFGGLAL-AIRLAAAGIPVTVVEQR 30 (502)
T ss_pred CEEECcCHHHHHH-HHHHHhCCCcEEEEECC
Confidence 3699999999998 77888899999988743
No 365
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=60.28 E-value=9.4 Score=40.74 Aligned_cols=32 Identities=28% Similarity=0.262 Sum_probs=22.9
Q ss_pred EEEEeechhhHHHHHHHHHhCCCcEEEecCCCC
Q 009293 78 IHFVGIGGSGLSALAKLALKQGFEVSGSDLVWS 110 (538)
Q Consensus 78 v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~ 110 (538)
|.|||.|.+|+-| |..++.+|.+|...+.+..
T Consensus 3 viIIGgGaAGl~a-A~~aa~~g~~V~vlE~~~~ 34 (409)
T PF03486_consen 3 VIIIGGGAAGLMA-AITAAEKGARVLVLERNKR 34 (409)
T ss_dssp EEEE--SHHHHHH-HHHHHHTT--EEEE-SSSS
T ss_pred EEEECCCHHHHHH-HHHHHhCCCCEEEEeCCcc
Confidence 7899999999987 7888899999999996543
No 366
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=60.26 E-value=8.6 Score=44.46 Aligned_cols=31 Identities=29% Similarity=0.396 Sum_probs=27.8
Q ss_pred CceEEEEeechhhHHHHHHHHHhCCCcEEEec
Q 009293 75 KGWIHFVGIGGSGLSALAKLALKQGFEVSGSD 106 (538)
Q Consensus 75 ~~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D 106 (538)
.++|.|||.|.+|++| |..|+.+|++|+..|
T Consensus 431 ~~~V~IIGaGpAGl~a-A~~l~~~G~~V~v~e 461 (752)
T PRK12778 431 GKKVAVIGSGPAGLSF-AGDLAKRGYDVTVFE 461 (752)
T ss_pred CCEEEEECcCHHHHHH-HHHHHHCCCeEEEEe
Confidence 3569999999999997 888899999999988
No 367
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=60.22 E-value=8.8 Score=41.83 Aligned_cols=29 Identities=31% Similarity=0.400 Sum_probs=24.2
Q ss_pred EEeCC---CCchHHHHHHHHHHHHcCCCeEEE
Q 009293 185 AVSGS---HGKSTTASMLAYVLKAMGDDLTAI 213 (538)
Q Consensus 185 ~VTGT---nGKTTTt~ml~~iL~~~G~~v~~~ 213 (538)
.|||| .|||.++..|...|++.|++++.+
T Consensus 2 ~I~GT~t~vGKT~v~~~L~~~l~~~G~~v~~f 33 (475)
T TIGR00313 2 MVVGTTSSAGKSTLTAGLCRILARRGYRVAPF 33 (475)
T ss_pred EEeeCCCCCCHHHHHHHHHHHHHhCCCeEEEE
Confidence 45554 799999999999999999997643
No 368
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=60.16 E-value=21 Score=36.97 Aligned_cols=35 Identities=26% Similarity=0.326 Sum_probs=29.6
Q ss_pred CCcEEEEeCCC--CchHHHHHHHHHHHHcCCCeEEEe
Q 009293 180 KYNLIAVSGSH--GKSTTASMLAYVLKAMGDDLTAIV 214 (538)
Q Consensus 180 ~~~vI~VTGTn--GKTTTt~ml~~iL~~~G~~v~~~~ 214 (538)
+..+|+|||.. ||||.+..+...|+..|++++.+.
T Consensus 55 ~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~ 91 (332)
T PRK09435 55 NALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLA 91 (332)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 45699999975 799999999999999999876544
No 369
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=60.14 E-value=41 Score=39.22 Aligned_cols=81 Identities=21% Similarity=0.160 Sum_probs=53.1
Q ss_pred CceEEEEeechhhHHHHHHHHHhCCCcEEEecCCCC-------h-----hHHHHHHCCCeEEeCCCCCCc---------C
Q 009293 75 KGWIHFVGIGGSGLSALAKLALKQGFEVSGSDLVWS-------S-----YMEGLLEAGANLHIGHSVSNI---------Q 133 (538)
Q Consensus 75 ~~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~-------~-----~~~~~~~~Ga~~~~~~~~~~~---------~ 133 (538)
.+++.|||.|.+|+-+ |..|+..|.+|+..+..+. + ..+.+.+.|+.+..+.....+ .
T Consensus 140 ~k~vvVVGgG~~GlE~-A~~L~~~G~~Vtvv~~~~~ll~~~ld~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~~~~v~ 218 (785)
T TIGR02374 140 FKKAAVIGGGLLGLEA-AVGLQNLGMDVSVIHHAPGLMAKQLDQTAGRLLQRELEQKGLTFLLEKDTVEIVGATKADRIR 218 (785)
T ss_pred CCeEEEECCCHHHHHH-HHHHHhcCCeEEEEccCCchhhhhcCHHHHHHHHHHHHHcCCEEEeCCceEEEEcCCceEEEE
Confidence 3568999999999986 7888889999998764321 1 123456779888765321111 0
Q ss_pred CCCC-CCCCCEEEEcCCCCCCCHH
Q 009293 134 GNDG-SRFPNAVVASSAIPQDNVE 156 (538)
Q Consensus 134 ~~~~-~~~~d~vvvsp~i~~~~~~ 156 (538)
..++ .-.+|+||+++|+.|....
T Consensus 219 ~~dG~~i~~D~Vi~a~G~~Pn~~l 242 (785)
T TIGR02374 219 FKDGSSLEADLIVMAAGIRPNDEL 242 (785)
T ss_pred ECCCCEEEcCEEEECCCCCcCcHH
Confidence 0000 1137999999999887653
No 370
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=60.07 E-value=15 Score=39.37 Aligned_cols=46 Identities=15% Similarity=0.052 Sum_probs=33.4
Q ss_pred ceEEEEeechhhHHHHHHHHHhCCCcEEEecCCCChhHHHHHHCCCeE
Q 009293 76 GWIHFVGIGGSGLSALAKLALKQGFEVSGSDLVWSSYMEGLLEAGANL 123 (538)
Q Consensus 76 ~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~~~~~~~~~~Ga~~ 123 (538)
++|+|+|.|..|+.+ |..|+..|.+|.+.|.+... ...+...|+.+
T Consensus 213 k~VlViG~G~IG~~v-A~~lr~~Ga~ViV~d~dp~r-a~~A~~~G~~v 258 (425)
T PRK05476 213 KVVVVAGYGDVGKGC-AQRLRGLGARVIVTEVDPIC-ALQAAMDGFRV 258 (425)
T ss_pred CEEEEECCCHHHHHH-HHHHHhCCCEEEEEcCCchh-hHHHHhcCCEe
Confidence 569999999999985 67778899999999865332 23334446553
No 371
>PRK05868 hypothetical protein; Validated
Probab=60.05 E-value=11 Score=39.44 Aligned_cols=32 Identities=19% Similarity=0.180 Sum_probs=27.5
Q ss_pred ceEEEEeechhhHHHHHHHHHhCCCcEEEecCC
Q 009293 76 GWIHFVGIGGSGLSALAKLALKQGFEVSGSDLV 108 (538)
Q Consensus 76 ~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~ 108 (538)
++|+|+|.|.+|.++ |..|+.+|.+|.+.|..
T Consensus 2 ~~V~IvGgG~aGl~~-A~~L~~~G~~v~viE~~ 33 (372)
T PRK05868 2 KTVVVSGASVAGTAA-AYWLGRHGYSVTMVERH 33 (372)
T ss_pred CeEEEECCCHHHHHH-HHHHHhCCCCEEEEcCC
Confidence 358999999999975 88889999999999843
No 372
>COG3954 PrkB Phosphoribulokinase [Energy production and conversion]
Probab=59.99 E-value=5.5 Score=37.54 Aligned_cols=30 Identities=30% Similarity=0.428 Sum_probs=21.1
Q ss_pred CCcEEEEeCCCCchHHHH--HHHHHHHHcCCC
Q 009293 180 KYNLIAVSGSHGKSTTAS--MLAYVLKAMGDD 209 (538)
Q Consensus 180 ~~~vI~VTGTnGKTTTt~--ml~~iL~~~G~~ 209 (538)
+.|+|+||||.|-+||+. -...|++....+
T Consensus 4 KhPiIavTGSSGAGTTTts~aFrKiF~~~~I~ 35 (289)
T COG3954 4 KHPVIAVTGSSGAGTTTTSLAFRKIFAQLNIH 35 (289)
T ss_pred CCceEEEecCCCCCcccHHHHHHHHHHhcCcc
Confidence 578999999998765554 445677665544
No 373
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=59.93 E-value=39 Score=36.23 Aligned_cols=70 Identities=19% Similarity=0.200 Sum_probs=45.4
Q ss_pred eEEEEeechhhHHHHHHHHHhCCCcEEEecCCCChhHHHHHH-CCCeEEeCCCCC--CcCCCCCCCCCCEEEEcCC
Q 009293 77 WIHFVGIGGSGLSALAKLALKQGFEVSGSDLVWSSYMEGLLE-AGANLHIGHSVS--NIQGNDGSRFPNAVVASSA 149 (538)
Q Consensus 77 ~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~~~~~~~~~-~Ga~~~~~~~~~--~~~~~~~~~~~d~vvvsp~ 149 (538)
+|+|+|.|..|+.. +..|..+|++|.+.|.+.. ..+.+.+ .|..++.++... .+.. .....+|.+++...
T Consensus 2 ~viIiG~G~ig~~~-a~~L~~~g~~v~vid~~~~-~~~~~~~~~~~~~~~gd~~~~~~l~~-~~~~~a~~vi~~~~ 74 (453)
T PRK09496 2 KIIIVGAGQVGYTL-AENLSGENNDVTVIDTDEE-RLRRLQDRLDVRTVVGNGSSPDVLRE-AGAEDADLLIAVTD 74 (453)
T ss_pred EEEEECCCHHHHHH-HHHHHhCCCcEEEEECCHH-HHHHHHhhcCEEEEEeCCCCHHHHHH-cCCCcCCEEEEecC
Confidence 58899999999985 6777889999999985432 3555554 677777763321 1110 01235788877643
No 374
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=59.92 E-value=8.6 Score=45.96 Aligned_cols=74 Identities=19% Similarity=0.266 Sum_probs=50.1
Q ss_pred ceEEEEeechhhHHHHHHHHHhCCCcEEEecCCC---------------C-h----hHHHHHHCCCeEEeCCCC-CCcCC
Q 009293 76 GWIHFVGIGGSGLSALAKLALKQGFEVSGSDLVW---------------S-S----YMEGLLEAGANLHIGHSV-SNIQG 134 (538)
Q Consensus 76 ~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~---------------~-~----~~~~~~~~Ga~~~~~~~~-~~~~~ 134 (538)
++|.|||.|.+|++| |..|+.+|++|+..|... . + .++.+.+.|+.+..+... .++..
T Consensus 431 ~kVaIIG~GPAGLsa-A~~La~~G~~VtV~E~~~~~GG~l~~gip~~rl~~e~~~~~~~~l~~~Gv~~~~~~~vg~~~~~ 509 (1006)
T PRK12775 431 GKVAICGSGPAGLAA-AADLVKYGVDVTVYEALHVVGGVLQYGIPSFRLPRDIIDREVQRLVDIGVKIETNKVIGKTFTV 509 (1006)
T ss_pred CEEEEECCCHHHHHH-HHHHHHcCCcEEEEecCCCCcceeeccCCccCCCHHHHHHHHHHHHHCCCEEEeCCccCCccCH
Confidence 579999999999998 788899999999988531 0 1 234566789988765321 11110
Q ss_pred CCC--CCCCCEEEEcCCC
Q 009293 135 NDG--SRFPNAVVASSAI 150 (538)
Q Consensus 135 ~~~--~~~~d~vvvsp~i 150 (538)
... ...+|.||+..|.
T Consensus 510 ~~l~~~~~yDaViIATGa 527 (1006)
T PRK12775 510 PQLMNDKGFDAVFLGVGA 527 (1006)
T ss_pred HHHhhccCCCEEEEecCC
Confidence 000 1248999998886
No 375
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=59.61 E-value=46 Score=38.29 Aligned_cols=34 Identities=18% Similarity=0.121 Sum_probs=28.0
Q ss_pred CceEEEEeechhhHHHHHHHHHhCCCcEEEecCCC
Q 009293 75 KGWIHFVGIGGSGLSALAKLALKQGFEVSGSDLVW 109 (538)
Q Consensus 75 ~~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~ 109 (538)
-++|.|||.|.-|.+ +|..++..|++|...|.+.
T Consensus 313 i~~v~ViGaG~mG~g-IA~~~a~~G~~V~l~d~~~ 346 (714)
T TIGR02437 313 VKQAAVLGAGIMGGG-IAYQSASKGTPIVMKDINQ 346 (714)
T ss_pred cceEEEECCchHHHH-HHHHHHhCCCeEEEEeCCH
Confidence 356999999988876 5777788999999999764
No 376
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=59.61 E-value=9.3 Score=40.36 Aligned_cols=30 Identities=30% Similarity=0.170 Sum_probs=26.5
Q ss_pred eEEEEeechhhHHHHHHHHHhCCCcEEEecC
Q 009293 77 WIHFVGIGGSGLSALAKLALKQGFEVSGSDL 107 (538)
Q Consensus 77 ~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~ 107 (538)
.|+|||.|..|.++ |..|+.+|.+|...|.
T Consensus 4 dV~IVGaG~aGl~~-A~~L~~~G~~v~viE~ 33 (405)
T PRK05714 4 DLLIVGAGMVGSAL-ALALQGSGLEVLLLDG 33 (405)
T ss_pred cEEEECccHHHHHH-HHHHhcCCCEEEEEcC
Confidence 48899999999985 8888999999999984
No 377
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=59.60 E-value=8.6 Score=42.03 Aligned_cols=30 Identities=30% Similarity=0.403 Sum_probs=26.7
Q ss_pred ceEEEEeechhhHHHHHHHHHhCCCcEEEec
Q 009293 76 GWIHFVGIGGSGLSALAKLALKQGFEVSGSD 106 (538)
Q Consensus 76 ~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D 106 (538)
.+|.|||.|..|.+| |.+|+++|++|.+.+
T Consensus 4 ~dvvVIGaG~~GL~a-Aa~LA~~G~~V~VlE 33 (487)
T COG1233 4 YDVVVIGAGLNGLAA-AALLARAGLKVTVLE 33 (487)
T ss_pred ccEEEECCChhHHHH-HHHHHhCCCEEEEEE
Confidence 357899999999987 788899999999987
No 378
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=59.37 E-value=9.6 Score=40.41 Aligned_cols=30 Identities=27% Similarity=0.254 Sum_probs=26.7
Q ss_pred eEEEEeechhhHHHHHHHHHhCCCcEEEecC
Q 009293 77 WIHFVGIGGSGLSALAKLALKQGFEVSGSDL 107 (538)
Q Consensus 77 ~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~ 107 (538)
+|+|||.|.+|.+| |..|+.+|.+|...|.
T Consensus 2 ~VvIVGaGPAG~~a-A~~la~~G~~V~llE~ 31 (398)
T TIGR02028 2 RVAVVGGGPAGASA-AETLASAGIQTFLLER 31 (398)
T ss_pred eEEEECCcHHHHHH-HHHHHhCCCcEEEEec
Confidence 47899999999986 7888999999999984
No 379
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=59.24 E-value=8.9 Score=39.86 Aligned_cols=30 Identities=27% Similarity=0.335 Sum_probs=26.5
Q ss_pred EEEEeechhhHHHHHHHHHhCCCcEEEecCC
Q 009293 78 IHFVGIGGSGLSALAKLALKQGFEVSGSDLV 108 (538)
Q Consensus 78 v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~ 108 (538)
|+|||.|.+|.++ |..|+.+|.+|.+.|..
T Consensus 2 ViIvGaG~aGl~~-A~~L~~~G~~v~v~Er~ 31 (385)
T TIGR01988 2 IVIVGGGMVGLAL-ALALARSGLKIALIEAT 31 (385)
T ss_pred EEEECCCHHHHHH-HHHHhcCCCEEEEEeCC
Confidence 7899999999986 78899999999999854
No 380
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=59.23 E-value=9.7 Score=37.73 Aligned_cols=30 Identities=30% Similarity=0.300 Sum_probs=26.3
Q ss_pred EEEEeechhhHHHHHHHHHhCCCcEEEecCC
Q 009293 78 IHFVGIGGSGLSALAKLALKQGFEVSGSDLV 108 (538)
Q Consensus 78 v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~ 108 (538)
|+|||.|.+|.++ |..|++.|.+|...|..
T Consensus 3 v~IiGaG~aGl~~-A~~l~~~g~~v~vie~~ 32 (295)
T TIGR02032 3 VVVVGAGPAGASA-AYRLADKGLRVLLLEKK 32 (295)
T ss_pred EEEECCCHHHHHH-HHHHHHCCCeEEEEecc
Confidence 7899999999986 78888999999999843
No 381
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=58.96 E-value=8.8 Score=40.33 Aligned_cols=31 Identities=23% Similarity=0.099 Sum_probs=27.1
Q ss_pred eEEEEeechhhHHHHHHHHHhCCCcEEEecCC
Q 009293 77 WIHFVGIGGSGLSALAKLALKQGFEVSGSDLV 108 (538)
Q Consensus 77 ~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~ 108 (538)
.|+|||.|.+|.++ |..|+.+|.+|...|..
T Consensus 8 dV~IvGaG~aGl~~-A~~La~~G~~v~liE~~ 38 (392)
T PRK08773 8 DAVIVGGGVVGAAC-ALALADAGLSVALVEGR 38 (392)
T ss_pred CEEEECcCHHHHHH-HHHHhcCCCEEEEEeCC
Confidence 48899999999986 78899999999999843
No 382
>cd03113 CTGs CTP synthetase (CTPs) is a two-domain protein, which consists of an N-terminal synthetase domain and C-terminal glutaminase domain. The enzymes hydrolyze the amide bond of glutamine to ammonia and glutamate at the glutaminase domains and transfer nascent ammonia to the acceptor substrate at the synthetase domain to form an aminated product. Glutaminase domains have evolved from the same ancestor, whereas the synthetase domains are evolutionarily unrelated and have different functions. This protein family is classified based on the N-terminal synthetase domain.
Probab=58.96 E-value=30 Score=34.07 Aligned_cols=57 Identities=35% Similarity=0.452 Sum_probs=36.5
Q ss_pred cEEEEeC----CCCchHHHHHHHHHHHHcCCCeEEE-eCCCCCCCCCCccc-cCCCcEEEEeec
Q 009293 182 NLIAVSG----SHGKSTTASMLAYVLKAMGDDLTAI-VGAHVPQFPDGSIF-YGGGKNFVLEAD 239 (538)
Q Consensus 182 ~vI~VTG----TnGKTTTt~ml~~iL~~~G~~v~~~-~g~~~~~~~~~~~~-~~~~~~~VlE~~ 239 (538)
+.|.||| +=||+.|++-+..+|+..|++|... .-++++- ..+... ..-.+.||.+.+
T Consensus 1 kyi~vtGgv~s~lgkgi~~as~g~ll~~~g~~v~~~K~DpYlNv-d~GtmsP~~HGEvfVt~DG 63 (255)
T cd03113 1 KYIFVTGGVVSSLGKGITAASLGRLLKARGLKVTAQKLDPYLNV-DPGTMSPYQHGEVFVTDDG 63 (255)
T ss_pred CEEEEeCCcccCcchHHHHHHHHHHHHHCCCeEEEEeecccccC-CCCCCCCccceeEEEccCC
Confidence 3577787 5699999999999999999997543 2333221 111111 122467888753
No 383
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=58.85 E-value=9.6 Score=39.88 Aligned_cols=30 Identities=20% Similarity=0.176 Sum_probs=26.4
Q ss_pred eEEEEeechhhHHHHHHHHHhCCCcEEEecC
Q 009293 77 WIHFVGIGGSGLSALAKLALKQGFEVSGSDL 107 (538)
Q Consensus 77 ~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~ 107 (538)
.|.|||.|.+|.++ |..|+..|.+|...|.
T Consensus 3 dV~IvGgG~~Gl~~-A~~L~~~G~~v~l~E~ 32 (374)
T PRK06617 3 NTVILGCGLSGMLT-ALSFAQKGIKTTIFES 32 (374)
T ss_pred cEEEECCCHHHHHH-HHHHHcCCCeEEEecC
Confidence 47899999999975 8888999999999883
No 384
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=58.82 E-value=12 Score=32.23 Aligned_cols=29 Identities=41% Similarity=0.581 Sum_probs=23.7
Q ss_pred EEEe--CCCCchHHHHHHHHHHHHcCCCeEE
Q 009293 184 IAVS--GSHGKSTTASMLAYVLKAMGDDLTA 212 (538)
Q Consensus 184 I~VT--GTnGKTTTt~ml~~iL~~~G~~v~~ 212 (538)
|.++ |..||||++..+++.|.+.|.++..
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~ 32 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAEKGKPVLA 32 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEE
Confidence 4445 5789999999999999999988653
No 385
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=58.81 E-value=9.9 Score=37.80 Aligned_cols=30 Identities=37% Similarity=0.430 Sum_probs=26.6
Q ss_pred eEEEEeechhhHHHHHHHHHhCCCcEEEecC
Q 009293 77 WIHFVGIGGSGLSALAKLALKQGFEVSGSDL 107 (538)
Q Consensus 77 ~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~ 107 (538)
.|+|||.|.+|++| |..|+..|.+|...|.
T Consensus 27 DVvIVGgGpAGl~A-A~~la~~G~~V~liEk 56 (257)
T PRK04176 27 DVAIVGAGPSGLTA-AYYLAKAGLKVAVFER 56 (257)
T ss_pred CEEEECccHHHHHH-HHHHHhCCCeEEEEec
Confidence 48899999999987 7888999999999884
No 386
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=58.73 E-value=8.9 Score=37.22 Aligned_cols=30 Identities=30% Similarity=0.517 Sum_probs=24.9
Q ss_pred CCcEEEEeCCC--CchHHHHHHHHHHHHcCCC
Q 009293 180 KYNLIAVSGSH--GKSTTASMLAYVLKAMGDD 209 (538)
Q Consensus 180 ~~~vI~VTGTn--GKTTTt~ml~~iL~~~G~~ 209 (538)
+..+|||+|-| ||||.+..|...|+..+-.
T Consensus 32 ~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~ 63 (229)
T PRK09270 32 RRTIVGIAGPPGAGKSTLAEFLEALLQQDGEL 63 (229)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhhhccCC
Confidence 45699999976 5999999999999876543
No 387
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=58.71 E-value=9.8 Score=40.91 Aligned_cols=31 Identities=29% Similarity=0.276 Sum_probs=26.5
Q ss_pred ceEEEEeechhhHHHHHHHHHhC----CCcEEEecC
Q 009293 76 GWIHFVGIGGSGLSALAKLALKQ----GFEVSGSDL 107 (538)
Q Consensus 76 ~~v~vlG~G~sG~~~la~~l~~~----G~~v~g~D~ 107 (538)
.+|.|||.|.+|.+| |..|+.+ |.+|.+.+.
T Consensus 3 ~~v~VIGaGiaGL~a-A~~L~~~~~~~g~~v~vlE~ 37 (462)
T TIGR00562 3 KHVVIIGGGISGLCA-AYYLEKEIPELPVELTLVEA 37 (462)
T ss_pred ceEEEECCCHHHHHH-HHHHHhcCCCCCCcEEEEEc
Confidence 358899999999997 7888888 999998873
No 388
>PRK09126 hypothetical protein; Provisional
Probab=58.69 E-value=9.5 Score=39.96 Aligned_cols=31 Identities=32% Similarity=0.323 Sum_probs=27.2
Q ss_pred eEEEEeechhhHHHHHHHHHhCCCcEEEecCC
Q 009293 77 WIHFVGIGGSGLSALAKLALKQGFEVSGSDLV 108 (538)
Q Consensus 77 ~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~ 108 (538)
.|+|||.|.+|.++ |..|++.|.+|...|..
T Consensus 5 dviIvGgG~aGl~~-A~~L~~~G~~v~v~E~~ 35 (392)
T PRK09126 5 DIVVVGAGPAGLSF-ARSLAGSGLKVTLIERQ 35 (392)
T ss_pred cEEEECcCHHHHHH-HHHHHhCCCcEEEEeCC
Confidence 48899999999975 88889999999999854
No 389
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=58.66 E-value=22 Score=38.86 Aligned_cols=75 Identities=20% Similarity=0.234 Sum_probs=47.1
Q ss_pred ceEEEEeechhhHHHHHHHHHhCCCcEEEecCCC---------------C-hh----HHHHHHCCCeEEeCCCCC-CcCC
Q 009293 76 GWIHFVGIGGSGLSALAKLALKQGFEVSGSDLVW---------------S-SY----MEGLLEAGANLHIGHSVS-NIQG 134 (538)
Q Consensus 76 ~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~---------------~-~~----~~~~~~~Ga~~~~~~~~~-~~~~ 134 (538)
++|+|||.|.+|+++ |..|+.+|++|...|... . +. .+.+.+.|+.+..+.... ++..
T Consensus 144 ~~V~IIGaG~aGl~a-A~~L~~~g~~V~v~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~~~~~ 222 (485)
T TIGR01317 144 KKVAVVGSGPAGLAA-ADQLNRAGHTVTVFEREDRCGGLLMYGIPNMKLDKAIVDRRIDLLSAEGIDFVTNTEIGVDISA 222 (485)
T ss_pred CEEEEECCcHHHHHH-HHHHHHcCCeEEEEecCCCCCceeeccCCCccCCHHHHHHHHHHHHhCCCEEECCCEeCCccCH
Confidence 579999999999997 777888999999987432 1 11 234566788887653211 1100
Q ss_pred CCCCCCCCEEEEcCCCC
Q 009293 135 NDGSRFPNAVVASSAIP 151 (538)
Q Consensus 135 ~~~~~~~d~vvvsp~i~ 151 (538)
......+|.|++..|-.
T Consensus 223 ~~~~~~~d~VilAtGa~ 239 (485)
T TIGR01317 223 DELKEQFDAVVLAGGAT 239 (485)
T ss_pred HHHHhhCCEEEEccCCC
Confidence 00011467788877643
No 390
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=58.59 E-value=16 Score=39.09 Aligned_cols=32 Identities=19% Similarity=0.274 Sum_probs=25.6
Q ss_pred ceEEEEeechhhHHHHHHHHHhCCC-cEEEecCC
Q 009293 76 GWIHFVGIGGSGLSALAKLALKQGF-EVSGSDLV 108 (538)
Q Consensus 76 ~~v~vlG~G~sG~~~la~~l~~~G~-~v~g~D~~ 108 (538)
++|+|+|.|..|+.+ +..|+..|. +|.+.+..
T Consensus 183 ~~vlViGaG~iG~~~-a~~L~~~G~~~V~v~~r~ 215 (423)
T PRK00045 183 KKVLVIGAGEMGELV-AKHLAEKGVRKITVANRT 215 (423)
T ss_pred CEEEEECchHHHHHH-HHHHHHCCCCeEEEEeCC
Confidence 679999999999986 455667896 78888754
No 391
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.33 E-value=9.4 Score=39.92 Aligned_cols=33 Identities=33% Similarity=0.500 Sum_probs=26.2
Q ss_pred cEEEEeCC--CCchHHHHHHHHHHHHcCCCeEEEe
Q 009293 182 NLIAVSGS--HGKSTTASMLAYVLKAMGDDLTAIV 214 (538)
Q Consensus 182 ~vI~VTGT--nGKTTTt~ml~~iL~~~G~~v~~~~ 214 (538)
.+|-..|- .||||||.-++.-++..|++++...
T Consensus 102 sVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~Lvc 136 (483)
T KOG0780|consen 102 SVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVC 136 (483)
T ss_pred cEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEe
Confidence 36656653 4799999999999999999986543
No 392
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=58.18 E-value=19 Score=38.57 Aligned_cols=67 Identities=9% Similarity=0.087 Sum_probs=38.8
Q ss_pred ceEEEEeechhhHHHHHHHHHhCCC-cEEEecCCCChhHHHHHH-CC-CeEEeCCCCCCcCCCCCCCCCCEEEEcCC
Q 009293 76 GWIHFVGIGGSGLSALAKLALKQGF-EVSGSDLVWSSYMEGLLE-AG-ANLHIGHSVSNIQGNDGSRFPNAVVASSA 149 (538)
Q Consensus 76 ~~v~vlG~G~sG~~~la~~l~~~G~-~v~g~D~~~~~~~~~~~~-~G-a~~~~~~~~~~~~~~~~~~~~d~vvvsp~ 149 (538)
++|+|+|.|+.|..+ +..|+.+|. ++........ -...+.+ .| ..+..-.+.... ...+|+||...+
T Consensus 182 kkvlviGaG~~a~~v-a~~L~~~g~~~I~V~nRt~~-ra~~La~~~~~~~~~~~~~l~~~-----l~~aDiVI~aT~ 251 (414)
T PRK13940 182 KNVLIIGAGQTGELL-FRHVTALAPKQIMLANRTIE-KAQKITSAFRNASAHYLSELPQL-----IKKADIIIAAVN 251 (414)
T ss_pred CEEEEEcCcHHHHHH-HHHHHHcCCCEEEEECCCHH-HHHHHHHHhcCCeEecHHHHHHH-----hccCCEEEECcC
Confidence 579999999999986 566677884 6887775422 2333333 23 322211111111 125788888765
No 393
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=58.14 E-value=10 Score=41.36 Aligned_cols=31 Identities=32% Similarity=0.457 Sum_probs=26.7
Q ss_pred eEEEEeechhhHHHHHHHHHhCCCcEEEecCC
Q 009293 77 WIHFVGIGGSGLSALAKLALKQGFEVSGSDLV 108 (538)
Q Consensus 77 ~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~ 108 (538)
+|.|||.|..|++| |.+|+.+|++|.+.+..
T Consensus 3 dvvIIGaG~~GL~a-a~~La~~G~~v~vlE~~ 33 (492)
T TIGR02733 3 SVVVIGAGIAGLTA-AALLAKRGYRVTLLEQH 33 (492)
T ss_pred eEEEECcCHHHHHH-HHHHHHCCCeEEEEecC
Confidence 47899999999987 77778899999998744
No 394
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=58.13 E-value=9.7 Score=39.81 Aligned_cols=31 Identities=26% Similarity=0.109 Sum_probs=27.1
Q ss_pred eEEEEeechhhHHHHHHHHHhCCCcEEEecCC
Q 009293 77 WIHFVGIGGSGLSALAKLALKQGFEVSGSDLV 108 (538)
Q Consensus 77 ~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~ 108 (538)
.|+|||.|.+|.++ |..|++.|.+|...|..
T Consensus 7 dv~IvGgG~aGl~~-A~~L~~~G~~v~v~E~~ 37 (388)
T PRK07608 7 DVVVVGGGLVGASL-ALALAQSGLRVALLAPR 37 (388)
T ss_pred CEEEECcCHHHHHH-HHHHHhCCCeEEEEecC
Confidence 48899999999986 88889999999999843
No 395
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=58.11 E-value=44 Score=35.75 Aligned_cols=72 Identities=24% Similarity=0.229 Sum_probs=46.2
Q ss_pred CceEEEEeechhhHHHHHHHHHhCCCcEEEecCCCChhHHHHHHC--CCeEEeCCCCC--CcCCCCCCCCCCEEEEcCC
Q 009293 75 KGWIHFVGIGGSGLSALAKLALKQGFEVSGSDLVWSSYMEGLLEA--GANLHIGHSVS--NIQGNDGSRFPNAVVASSA 149 (538)
Q Consensus 75 ~~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~~~~~~~~~~--Ga~~~~~~~~~--~~~~~~~~~~~d~vvvsp~ 149 (538)
.++|+|+|.|..|+.. ++.|...|++|.+.|.++. ..+.+.+. |..++.|+... .+.. .....++.+++...
T Consensus 231 ~~~iiIiG~G~~g~~l-~~~L~~~~~~v~vid~~~~-~~~~~~~~~~~~~~i~gd~~~~~~L~~-~~~~~a~~vi~~~~ 306 (453)
T PRK09496 231 VKRVMIVGGGNIGYYL-AKLLEKEGYSVKLIERDPE-RAEELAEELPNTLVLHGDGTDQELLEE-EGIDEADAFIALTN 306 (453)
T ss_pred CCEEEEECCCHHHHHH-HHHHHhCCCeEEEEECCHH-HHHHHHHHCCCCeEEECCCCCHHHHHh-cCCccCCEEEECCC
Confidence 5679999999999985 6677779999999985543 34455543 56666663321 1110 01235788877654
No 396
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=58.08 E-value=9.9 Score=33.92 Aligned_cols=31 Identities=32% Similarity=0.317 Sum_probs=25.5
Q ss_pred EEEeechhhHHHHHHHHHhCCCcEEEecCCCC
Q 009293 79 HFVGIGGSGLSALAKLALKQGFEVSGSDLVWS 110 (538)
Q Consensus 79 ~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~ 110 (538)
+++|.|..+.+ ++++++..|++|.+.|.+++
T Consensus 2 ~I~GaG~va~a-l~~la~~lg~~v~v~d~r~e 32 (136)
T PF13478_consen 2 VIFGAGHVARA-LARLAALLGFRVTVVDPRPE 32 (136)
T ss_dssp EEES-STCHHH-HHHHHHHCTEEEEEEES-CC
T ss_pred EEEeCcHHHHH-HHHHHHhCCCEEEEEcCCcc
Confidence 58999999996 68999999999999997754
No 397
>PRK06184 hypothetical protein; Provisional
Probab=58.06 E-value=9.7 Score=41.67 Aligned_cols=31 Identities=23% Similarity=0.262 Sum_probs=27.8
Q ss_pred eEEEEeechhhHHHHHHHHHhCCCcEEEecCC
Q 009293 77 WIHFVGIGGSGLSALAKLALKQGFEVSGSDLV 108 (538)
Q Consensus 77 ~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~ 108 (538)
.|+|||.|.+|+++ |..|+..|.+|...|..
T Consensus 5 dVlIVGaGpaGl~~-A~~La~~Gi~v~viE~~ 35 (502)
T PRK06184 5 DVLIVGAGPTGLTL-AIELARRGVSFRLIEKA 35 (502)
T ss_pred cEEEECCCHHHHHH-HHHHHHCCCcEEEEeCC
Confidence 48999999999986 88899999999999964
No 398
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=58.00 E-value=9.5 Score=39.77 Aligned_cols=30 Identities=27% Similarity=0.259 Sum_probs=26.5
Q ss_pred EEEEeechhhHHHHHHHHHhCC-CcEEEecCC
Q 009293 78 IHFVGIGGSGLSALAKLALKQG-FEVSGSDLV 108 (538)
Q Consensus 78 v~vlG~G~sG~~~la~~l~~~G-~~v~g~D~~ 108 (538)
|+|||.|.+|.++ |..|+++| .+|...|..
T Consensus 2 v~IvGaG~aGl~~-A~~L~~~G~~~v~v~E~~ 32 (382)
T TIGR01984 2 VIIVGGGLVGLSL-ALALSRLGKIKIALIEAN 32 (382)
T ss_pred EEEECccHHHHHH-HHHHhcCCCceEEEEeCC
Confidence 6899999999975 89999999 999999843
No 399
>PRK03846 adenylylsulfate kinase; Provisional
Probab=57.98 E-value=24 Score=33.32 Aligned_cols=31 Identities=32% Similarity=0.393 Sum_probs=25.8
Q ss_pred cCCcEEEEeC--CCCchHHHHHHHHHHHHcCCC
Q 009293 179 EKYNLIAVSG--SHGKSTTASMLAYVLKAMGDD 209 (538)
Q Consensus 179 ~~~~vI~VTG--TnGKTTTt~ml~~iL~~~G~~ 209 (538)
.+..+|+++| -.||||.+..|+..|...|..
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~ 54 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVS 54 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCC
Confidence 3457999999 678999999999999777754
No 400
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=57.85 E-value=10 Score=40.85 Aligned_cols=29 Identities=41% Similarity=0.384 Sum_probs=26.3
Q ss_pred eEEEEeechhhHHHHHHHHHhCC--CcEEEec
Q 009293 77 WIHFVGIGGSGLSALAKLALKQG--FEVSGSD 106 (538)
Q Consensus 77 ~v~vlG~G~sG~~~la~~l~~~G--~~v~g~D 106 (538)
+|.|||.|.+|.+| |.+|++.| .+++..+
T Consensus 2 ~i~IiG~GiaGLsa-Ay~L~k~~p~~~i~lfE 32 (444)
T COG1232 2 KIAIIGGGIAGLSA-AYRLQKAGPDVEVTLFE 32 (444)
T ss_pred eEEEECCcHHHHHH-HHHHHHhCCCCcEEEEe
Confidence 58899999999997 89999999 8888877
No 401
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=57.41 E-value=10 Score=40.13 Aligned_cols=31 Identities=32% Similarity=0.317 Sum_probs=27.5
Q ss_pred eEEEEeechhhHHHHHHHHHhCCCcEEEecCC
Q 009293 77 WIHFVGIGGSGLSALAKLALKQGFEVSGSDLV 108 (538)
Q Consensus 77 ~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~ 108 (538)
.|.|||.|.+|-+| |..|++.|.+|...|..
T Consensus 5 DVvIVGaGPAGs~a-A~~la~~G~~VlvlEk~ 35 (396)
T COG0644 5 DVVIVGAGPAGSSA-ARRLAKAGLDVLVLEKG 35 (396)
T ss_pred eEEEECCchHHHHH-HHHHHHcCCeEEEEecC
Confidence 37899999999987 89999999999999854
No 402
>PRK00889 adenylylsulfate kinase; Provisional
Probab=57.36 E-value=20 Score=32.98 Aligned_cols=31 Identities=29% Similarity=0.298 Sum_probs=25.7
Q ss_pred CCcEEEEeCC--CCchHHHHHHHHHHHHcCCCe
Q 009293 180 KYNLIAVSGS--HGKSTTASMLAYVLKAMGDDL 210 (538)
Q Consensus 180 ~~~vI~VTGT--nGKTTTt~ml~~iL~~~G~~v 210 (538)
+..+|.++|. .||||++..++..|...|.++
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v 35 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLREAGYPV 35 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeE
Confidence 3468999994 689999999999998877654
No 403
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=57.29 E-value=11 Score=40.83 Aligned_cols=32 Identities=25% Similarity=0.442 Sum_probs=27.6
Q ss_pred CceEEEEeechhhHHHHHHHHHhCCCcEEEecC
Q 009293 75 KGWIHFVGIGGSGLSALAKLALKQGFEVSGSDL 107 (538)
Q Consensus 75 ~~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~ 107 (538)
.++|.|||.|.+|+++ |..|+.+|++|...|.
T Consensus 140 ~~~VvIIGgGpaGl~a-A~~l~~~g~~V~lie~ 171 (457)
T PRK11749 140 GKKVAVIGAGPAGLTA-AHRLARKGYDVTIFEA 171 (457)
T ss_pred CCcEEEECCCHHHHHH-HHHHHhCCCeEEEEcc
Confidence 3569999999999986 7788889999999883
No 404
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=57.18 E-value=11 Score=39.84 Aligned_cols=30 Identities=27% Similarity=0.323 Sum_probs=26.8
Q ss_pred eEEEEeechhhHHHHHHHHHhCCCcEEEecC
Q 009293 77 WIHFVGIGGSGLSALAKLALKQGFEVSGSDL 107 (538)
Q Consensus 77 ~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~ 107 (538)
+|+|||.|..|.++ |..|+.+|.+|.+.|.
T Consensus 2 ~v~IVG~Gi~Gls~-A~~l~~~g~~V~vle~ 31 (416)
T PRK00711 2 RVVVLGSGVIGVTS-AWYLAQAGHEVTVIDR 31 (416)
T ss_pred EEEEECCcHHHHHH-HHHHHHCCCEEEEEeC
Confidence 47899999999986 8888999999999984
No 405
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=57.08 E-value=21 Score=36.16 Aligned_cols=33 Identities=12% Similarity=0.166 Sum_probs=26.7
Q ss_pred ceEEEEeechhhHHHHHHHHHhCCCc-EEEecCCC
Q 009293 76 GWIHFVGIGGSGLSALAKLALKQGFE-VSGSDLVW 109 (538)
Q Consensus 76 ~~v~vlG~G~sG~~~la~~l~~~G~~-v~g~D~~~ 109 (538)
++++|+|.|+.|+++ +..|+..|.+ |...+.+.
T Consensus 127 k~vlI~GAGGagrAi-a~~La~~G~~~V~I~~R~~ 160 (289)
T PRK12548 127 KKLTVIGAGGAATAI-QVQCALDGAKEITIFNIKD 160 (289)
T ss_pred CEEEEECCcHHHHHH-HHHHHHCCCCEEEEEeCCc
Confidence 568999999999975 6667788987 99888653
No 406
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=56.98 E-value=27 Score=35.71 Aligned_cols=89 Identities=18% Similarity=0.056 Sum_probs=47.5
Q ss_pred ceEEEEeechhhHHHHHHHHHhCCC--c-EEEecCCCChhHHH-HHHCCCeEEeCCCCCCcCCCCCCCCCCEEEEcCCCC
Q 009293 76 GWIHFVGIGGSGLSALAKLALKQGF--E-VSGSDLVWSSYMEG-LLEAGANLHIGHSVSNIQGNDGSRFPNAVVASSAIP 151 (538)
Q Consensus 76 ~~v~vlG~G~sG~~~la~~l~~~G~--~-v~g~D~~~~~~~~~-~~~~Ga~~~~~~~~~~~~~~~~~~~~d~vvvsp~i~ 151 (538)
.+|.|||.|+.+....+..++..+. . |-..|.+.. .++. +.+.|+.... .+.+.+.. ....|+|++..- +
T Consensus 4 irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~-~a~~~a~~~~~~~~~-~~~~~ll~---~~~iD~V~Iatp-~ 77 (342)
T COG0673 4 IRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPE-RAEAFAEEFGIAKAY-TDLEELLA---DPDIDAVYIATP-N 77 (342)
T ss_pred eEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHH-HHHHHHHHcCCCccc-CCHHHHhc---CCCCCEEEEcCC-C
Confidence 4689999997775555555555442 3 334464332 2333 4456775211 12221110 013687777431 1
Q ss_pred CCCH-HHHHHHHCCCCeeeH
Q 009293 152 QDNV-EILHAKSVGVPIYKR 170 (538)
Q Consensus 152 ~~~~-~l~~a~~~gi~vi~~ 170 (538)
..|. ...+|.+.|..|+.+
T Consensus 78 ~~H~e~~~~AL~aGkhVl~E 97 (342)
T COG0673 78 ALHAELALAALEAGKHVLCE 97 (342)
T ss_pred hhhHHHHHHHHhcCCEEEEc
Confidence 3443 455667889999886
No 407
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=56.97 E-value=11 Score=40.27 Aligned_cols=31 Identities=26% Similarity=0.160 Sum_probs=27.2
Q ss_pred eEEEEeechhhHHHHHHHHHhCCCcEEEecCC
Q 009293 77 WIHFVGIGGSGLSALAKLALKQGFEVSGSDLV 108 (538)
Q Consensus 77 ~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~ 108 (538)
.|.|||.|.+|.+| |..|+.+|.+|...|..
T Consensus 7 DViIVGaGpAG~~a-A~~La~~G~~V~llEr~ 37 (428)
T PRK10157 7 DAIIVGAGLAGSVA-ALVLAREGAQVLVIERG 37 (428)
T ss_pred cEEEECcCHHHHHH-HHHHHhCCCeEEEEEcC
Confidence 48899999999986 78889999999999854
No 408
>PRK07538 hypothetical protein; Provisional
Probab=56.96 E-value=11 Score=40.06 Aligned_cols=31 Identities=26% Similarity=0.242 Sum_probs=26.9
Q ss_pred eEEEEeechhhHHHHHHHHHhCCCcEEEecCC
Q 009293 77 WIHFVGIGGSGLSALAKLALKQGFEVSGSDLV 108 (538)
Q Consensus 77 ~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~ 108 (538)
+|+|||.|.+|.++ |..|+++|.+|...+..
T Consensus 2 dV~IVGaG~aGl~~-A~~L~~~G~~v~v~E~~ 32 (413)
T PRK07538 2 KVLIAGGGIGGLTL-ALTLHQRGIEVVVFEAA 32 (413)
T ss_pred eEEEECCCHHHHHH-HHHHHhCCCcEEEEEcC
Confidence 48899999999975 78889999999999843
No 409
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=56.94 E-value=11 Score=39.66 Aligned_cols=32 Identities=19% Similarity=0.250 Sum_probs=27.8
Q ss_pred ceEEEEeechhhHHHHHHHHHhCCCcEEEecCC
Q 009293 76 GWIHFVGIGGSGLSALAKLALKQGFEVSGSDLV 108 (538)
Q Consensus 76 ~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~ 108 (538)
.+|+|||.|.+|.++ |..|++.|.+|...|..
T Consensus 3 ~dV~IvGaGpaGl~~-A~~L~~~G~~v~v~E~~ 34 (392)
T PRK08243 3 TQVAIIGAGPAGLLL-GQLLHLAGIDSVVLERR 34 (392)
T ss_pred ceEEEECCCHHHHHH-HHHHHhcCCCEEEEEcC
Confidence 358899999999986 88899999999999854
No 410
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=56.92 E-value=9.1 Score=40.61 Aligned_cols=31 Identities=19% Similarity=0.203 Sum_probs=26.1
Q ss_pred eEEEEeechhhHHHHHHHHHhCC-CcEEEecCC
Q 009293 77 WIHFVGIGGSGLSALAKLALKQG-FEVSGSDLV 108 (538)
Q Consensus 77 ~v~vlG~G~sG~~~la~~l~~~G-~~v~g~D~~ 108 (538)
+|+|||.|.+|+++ |..|+..| .+|.+.+..
T Consensus 2 ~V~IiGgGiaGla~-A~~L~~~g~~~v~v~Er~ 33 (414)
T TIGR03219 2 RVAIIGGGIAGVAL-ALNLCKHSHLNVQLFEAA 33 (414)
T ss_pred eEEEECCCHHHHHH-HHHHHhcCCCCEEEEecC
Confidence 58899999999975 88888888 599998843
No 411
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=56.86 E-value=16 Score=38.41 Aligned_cols=34 Identities=32% Similarity=0.304 Sum_probs=29.4
Q ss_pred CCcEEEEeC--CCCchHHHHHHHHHHHHcCCCeEEE
Q 009293 180 KYNLIAVSG--SHGKSTTASMLAYVLKAMGDDLTAI 213 (538)
Q Consensus 180 ~~~vI~VTG--TnGKTTTt~ml~~iL~~~G~~v~~~ 213 (538)
..++|+|+| -.||||...-+-..|++.|++++.+
T Consensus 204 ~~~~~~~~g~~~~GKtt~~~~l~~~l~~~g~~v~~i 239 (366)
T PRK14489 204 APPLLGVVGYSGTGKTTLLEKLIPELIARGYRIGLI 239 (366)
T ss_pred CccEEEEecCCCCCHHHHHHHHHHHHHHcCCEEEEE
Confidence 467999999 5689999999999999999987654
No 412
>PLN02494 adenosylhomocysteinase
Probab=56.63 E-value=21 Score=38.68 Aligned_cols=65 Identities=14% Similarity=0.061 Sum_probs=42.4
Q ss_pred CceEEEEeechhhHHHHHHHHHhCCCcEEEecCCCChhHHHHHHCCCeEEeCCCCCCcCCCCCCCCCCEEEEcCC
Q 009293 75 KGWIHFVGIGGSGLSALAKLALKQGFEVSGSDLVWSSYMEGLLEAGANLHIGHSVSNIQGNDGSRFPNAVVASSA 149 (538)
Q Consensus 75 ~~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~d~vvvsp~ 149 (538)
.++|+|+|.|..|+++ |..++..|.+|.++|..... ...+...|..+.. -.+.+ ...|+++..++
T Consensus 254 GKtVvViGyG~IGr~v-A~~aka~Ga~VIV~e~dp~r-~~eA~~~G~~vv~--leEal------~~ADVVI~tTG 318 (477)
T PLN02494 254 GKVAVICGYGDVGKGC-AAAMKAAGARVIVTEIDPIC-ALQALMEGYQVLT--LEDVV------SEADIFVTTTG 318 (477)
T ss_pred CCEEEEECCCHHHHHH-HHHHHHCCCEEEEEeCCchh-hHHHHhcCCeecc--HHHHH------hhCCEEEECCC
Confidence 3668999999999986 67778889999999854321 2245556765421 11111 14788887655
No 413
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=56.51 E-value=1.4e+02 Score=31.60 Aligned_cols=113 Identities=17% Similarity=0.193 Sum_probs=67.3
Q ss_pred eEEEEeechhhHHHHHHHHHhCCCcEEEecCCC--------------ChhHHHHHHCCCe---EEeCCCCCC-cCCCCCC
Q 009293 77 WIHFVGIGGSGLSALAKLALKQGFEVSGSDLVW--------------SSYMEGLLEAGAN---LHIGHSVSN-IQGNDGS 138 (538)
Q Consensus 77 ~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~--------------~~~~~~~~~~Ga~---~~~~~~~~~-~~~~~~~ 138 (538)
+|.|+|.|=-|... +..|+..|++|.+.|... ++-++++.+.+.. +....+... +
T Consensus 2 kI~viGtGYVGLv~-g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~------ 74 (414)
T COG1004 2 KITVIGTGYVGLVT-GACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAV------ 74 (414)
T ss_pred ceEEECCchHHHHH-HHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHHH------
Confidence 57899999999976 677789999999999752 1234444443221 222222211 1
Q ss_pred CCCCEEEEcCCCCCCC------HHHHHHHHCCCCeeeHHHHHHHHhcCCcEEEEeCCCCchHHHHHHHHHHHHc
Q 009293 139 RFPNAVVASSAIPQDN------VEILHAKSVGVPIYKRDYWLAKLTEKYNLIAVSGSHGKSTTASMLAYVLKAM 206 (538)
Q Consensus 139 ~~~d~vvvsp~i~~~~------~~l~~a~~~gi~vi~~~~~l~~~~~~~~vI~VTGTnGKTTTt~ml~~iL~~~ 206 (538)
+..|++++..|=|+.. ..+..+ .+-.+...+...+|.+--|.==+||..+...+....
T Consensus 75 ~~adv~fIavgTP~~~dg~aDl~~V~av----------a~~i~~~~~~~~vvV~KSTVPvGt~~~v~~~i~~~~ 138 (414)
T COG1004 75 KDADVVFIAVGTPPDEDGSADLSYVEAV----------AKDIGEILDGKAVVVIKSTVPVGTTEEVRAKIREEN 138 (414)
T ss_pred hcCCEEEEEcCCCCCCCCCccHHHHHHH----------HHHHHhhcCCCeEEEEcCCCCCCchHHHHHHHHhhc
Confidence 2468888877766531 112222 122333333446777777777777777777776654
No 414
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=56.51 E-value=33 Score=35.37 Aligned_cols=70 Identities=13% Similarity=0.025 Sum_probs=41.8
Q ss_pred CceEEEEee-chhhHHHHHHHHHhCCC-------cEEEecCCCCh-----hHHHHHH------CCCeEEeCCCCCCcCCC
Q 009293 75 KGWIHFVGI-GGSGLSALAKLALKQGF-------EVSGSDLVWSS-----YMEGLLE------AGANLHIGHSVSNIQGN 135 (538)
Q Consensus 75 ~~~v~vlG~-G~sG~~~la~~l~~~G~-------~v~g~D~~~~~-----~~~~~~~------~Ga~~~~~~~~~~~~~~ 135 (538)
.+||.|+|. |..|.++ |..|..+|. ++...|..... .+.++.. ....+. +.+.+++
T Consensus 2 p~KV~IiGa~G~VG~~~-a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~-~~~~~~~--- 76 (322)
T cd01338 2 PVRVAVTGAAGQIGYSL-LFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVIT-DDPNVAF--- 76 (322)
T ss_pred CeEEEEECCCcHHHHHH-HHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEe-cCcHHHh---
Confidence 468999999 9999875 666666665 67788874321 1111211 111221 2222333
Q ss_pred CCCCCCCEEEEcCCCCC
Q 009293 136 DGSRFPNAVVASSAIPQ 152 (538)
Q Consensus 136 ~~~~~~d~vvvsp~i~~ 152 (538)
+..|+||+.-|.|+
T Consensus 77 ---~daDivvitaG~~~ 90 (322)
T cd01338 77 ---KDADWALLVGAKPR 90 (322)
T ss_pred ---CCCCEEEEeCCCCC
Confidence 36899999988865
No 415
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=56.40 E-value=12 Score=33.33 Aligned_cols=45 Identities=22% Similarity=0.242 Sum_probs=33.3
Q ss_pred EEEEeechhhHHHHHHHHHhCCCcEEEecCCCChhHHHHHHCCCeEEe
Q 009293 78 IHFVGIGGSGLSALAKLALKQGFEVSGSDLVWSSYMEGLLEAGANLHI 125 (538)
Q Consensus 78 v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~~~~~~~~~~Ga~~~~ 125 (538)
|+|+|.|..|.- +|.+|+..|++|...+... ..+.+.+.|..+..
T Consensus 1 I~I~G~GaiG~~-~a~~L~~~g~~V~l~~r~~--~~~~~~~~g~~~~~ 45 (151)
T PF02558_consen 1 ILIIGAGAIGSL-YAARLAQAGHDVTLVSRSP--RLEAIKEQGLTITG 45 (151)
T ss_dssp EEEESTSHHHHH-HHHHHHHTTCEEEEEESHH--HHHHHHHHCEEEEE
T ss_pred CEEECcCHHHHH-HHHHHHHCCCceEEEEccc--cHHhhhheeEEEEe
Confidence 689999999986 4677777999999987432 34456667776644
No 416
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=56.36 E-value=43 Score=34.55 Aligned_cols=72 Identities=18% Similarity=0.084 Sum_probs=45.3
Q ss_pred ceEEEEeechhhHHHHHHHHHhCCCcEEEecCCC--ChhHHHHHHCCCeEEeCCCCCCcCCCCCCCCCCEEEEcCC
Q 009293 76 GWIHFVGIGGSGLSALAKLALKQGFEVSGSDLVW--SSYMEGLLEAGANLHIGHSVSNIQGNDGSRFPNAVVASSA 149 (538)
Q Consensus 76 ~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~--~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~d~vvvsp~ 149 (538)
.+|+|+|.|..|+.++ .+++..|.+|.+.+... ++-.+.+.+.|+..+...+. +.........+|+++-..|
T Consensus 174 ~~vlI~G~G~vG~~a~-q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~v~~~~~-~~~~~~~~~~~d~vid~~g 247 (355)
T cd08230 174 RRALVLGAGPIGLLAA-LLLRLRGFEVYVLNRRDPPDPKADIVEELGATYVNSSKT-PVAEVKLVGEFDLIIEATG 247 (355)
T ss_pred CEEEEECCCHHHHHHH-HHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEecCCcc-chhhhhhcCCCCEEEECcC
Confidence 4689999999999874 66777899999987532 23445567789986432221 1100000124788887765
No 417
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=56.28 E-value=11 Score=32.06 Aligned_cols=21 Identities=52% Similarity=0.580 Sum_probs=0.0
Q ss_pred EEEEeC--CCCchHHHHHHHHHH
Q 009293 183 LIAVSG--SHGKSTTASMLAYVL 203 (538)
Q Consensus 183 vI~VTG--TnGKTTTt~ml~~iL 203 (538)
+|+|+| -.||||++..|+.-|
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
No 418
>PLN02576 protoporphyrinogen oxidase
Probab=56.24 E-value=10 Score=41.24 Aligned_cols=31 Identities=32% Similarity=0.343 Sum_probs=26.5
Q ss_pred ceEEEEeechhhHHHHHHHHHhC-CCcEEEecC
Q 009293 76 GWIHFVGIGGSGLSALAKLALKQ-GFEVSGSDL 107 (538)
Q Consensus 76 ~~v~vlG~G~sG~~~la~~l~~~-G~~v~g~D~ 107 (538)
.+|+|||.|.+|.+| |.+|+.. |.+|.+...
T Consensus 13 ~~v~IIGaGisGL~a-A~~L~~~~g~~v~vlEa 44 (496)
T PLN02576 13 KDVAVVGAGVSGLAA-AYALASKHGVNVLVTEA 44 (496)
T ss_pred CCEEEECcCHHHHHH-HHHHHHhcCCCEEEEec
Confidence 358899999999987 7888888 999998873
No 419
>PRK05637 anthranilate synthase component II; Provisional
Probab=56.19 E-value=1.1e+02 Score=29.28 Aligned_cols=79 Identities=10% Similarity=0.057 Sum_probs=49.5
Q ss_pred ceEEEEeechhhHHHHHHHHHhCCCcEEEecCCCChhHHHHHHCCCeEEeCCCCCCcCCCCCCCCCCEEEEcCCCCCCCH
Q 009293 76 GWIHFVGIGGSGLSALAKLALKQGFEVSGSDLVWSSYMEGLLEAGANLHIGHSVSNIQGNDGSRFPNAVVASSAIPQDNV 155 (538)
Q Consensus 76 ~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~d~vvvsp~i~~~~~ 155 (538)
++|++|-.+.|--..+..+|...|..+....... ..+++.+ ..+|.||+||| |.+|
T Consensus 2 ~~il~iD~~dsf~~nl~~~l~~~g~~~~v~~~~~--~~~~l~~--------------------~~~~~iIlsgG--Pg~~ 57 (208)
T PRK05637 2 THVVLIDNHDSFVYNLVDAFAVAGYKCTVFRNTV--PVEEILA--------------------ANPDLICLSPG--PGHP 57 (208)
T ss_pred CEEEEEECCcCHHHHHHHHHHHCCCcEEEEeCCC--CHHHHHh--------------------cCCCEEEEeCC--CCCH
Confidence 4588888888888888888888898888776321 1222211 14688999998 6665
Q ss_pred HHHHHHHCCCCeeeHHHHHHHHhcCCcEEEEe
Q 009293 156 EILHAKSVGVPIYKRDYWLAKLTEKYNLIAVS 187 (538)
Q Consensus 156 ~l~~a~~~gi~vi~~~~~l~~~~~~~~vI~VT 187 (538)
.-... ..+++.....+.|+.||.
T Consensus 58 ~d~~~---------~~~li~~~~~~~PiLGIC 80 (208)
T PRK05637 58 RDAGN---------MMALIDRTLGQIPLLGIC 80 (208)
T ss_pred HHhhH---------HHHHHHHHhCCCCEEEEc
Confidence 22111 013343323468999997
No 420
>PLN02487 zeta-carotene desaturase
Probab=56.14 E-value=13 Score=41.54 Aligned_cols=32 Identities=34% Similarity=0.367 Sum_probs=27.9
Q ss_pred CceEEEEeechhhHHHHHHHHHhCCCcEEEecC
Q 009293 75 KGWIHFVGIGGSGLSALAKLALKQGFEVSGSDL 107 (538)
Q Consensus 75 ~~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~ 107 (538)
..+|+|||.|.+|+++ |..|+..|++|+..+.
T Consensus 75 ~~~v~iiG~G~~Gl~~-a~~L~~~g~~v~i~E~ 106 (569)
T PLN02487 75 KLKVAIIGAGLAGMST-AVELLDQGHEVDIYES 106 (569)
T ss_pred CCeEEEECCCHHHHHH-HHHHHhCCCeeEEEec
Confidence 3479999999999987 7888889999999884
No 421
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=56.08 E-value=28 Score=37.55 Aligned_cols=31 Identities=45% Similarity=0.512 Sum_probs=27.5
Q ss_pred cEEEEeC----CCCchHHHHHHHHHHHHcCCCeEE
Q 009293 182 NLIAVSG----SHGKSTTASMLAYVLKAMGDDLTA 212 (538)
Q Consensus 182 ~vI~VTG----TnGKTTTt~ml~~iL~~~G~~v~~ 212 (538)
+.|.||| +=||+.|++-|+.+|+..|++|..
T Consensus 2 KyIfVTGGVvSslGKGi~aaSlg~lLk~rG~~Vt~ 36 (533)
T COG0504 2 KYIFVTGGVVSSLGKGITAASLGRLLKARGLKVTI 36 (533)
T ss_pred eEEEEeCCeecccccHHHHHHHHHHHHHCCceEEE
Confidence 5678887 789999999999999999999764
No 422
>PRK06436 glycerate dehydrogenase; Provisional
Probab=56.06 E-value=13 Score=37.86 Aligned_cols=107 Identities=17% Similarity=0.157 Sum_probs=59.7
Q ss_pred hhcCCCceEEEEeechhhHHHHHHHHHhCCCcEEEecCCCChhHHHHHHCCCeEEeCCCCCCcCCCCCCCCCCEEEEcCC
Q 009293 70 DFKNRKGWIHFVGIGGSGLSALAKLALKQGFEVSGSDLVWSSYMEGLLEAGANLHIGHSVSNIQGNDGSRFPNAVVASSA 149 (538)
Q Consensus 70 ~~~~~~~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~d~vvvsp~ 149 (538)
.+.+ ++|.|+|+|..|+.. |+.++.-|.+|.++|.... +.|+..... ..+++. ..+|+|++.-.
T Consensus 119 ~L~g--ktvgIiG~G~IG~~v-A~~l~afG~~V~~~~r~~~-------~~~~~~~~~-~l~ell-----~~aDiv~~~lp 182 (303)
T PRK06436 119 LLYN--KSLGILGYGGIGRRV-ALLAKAFGMNIYAYTRSYV-------NDGISSIYM-EPEDIM-----KKSDFVLISLP 182 (303)
T ss_pred CCCC--CEEEEECcCHHHHHH-HHHHHHCCCEEEEECCCCc-------ccCcccccC-CHHHHH-----hhCCEEEECCC
Confidence 3444 679999999999975 6778878999999995321 112221111 111111 25788777542
Q ss_pred CCCCCHHHHHHHHCCCCeeeHHHHHHHHhcCCcEEEEeCCCCchHHHHHHHHHHHH
Q 009293 150 IPQDNVEILHAKSVGVPIYKRDYWLAKLTEKYNLIAVSGSHGKSTTASMLAYVLKA 205 (538)
Q Consensus 150 i~~~~~~l~~a~~~gi~vi~~~~~l~~~~~~~~vI~VTGTnGKTTTt~ml~~iL~~ 205 (538)
..++-.. ++. .+.+... ++ ..+-|-=+.|..--..-|.+.|++
T Consensus 183 ---~t~~T~~-------li~-~~~l~~m-k~-ga~lIN~sRG~~vd~~aL~~aL~~ 225 (303)
T PRK06436 183 ---LTDETRG-------MIN-SKMLSLF-RK-GLAIINVARADVVDKNDMLNFLRN 225 (303)
T ss_pred ---CCchhhc-------CcC-HHHHhcC-CC-CeEEEECCCccccCHHHHHHHHHc
Confidence 2222111 122 2344433 22 355565567777777777777765
No 423
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=55.92 E-value=11 Score=39.03 Aligned_cols=29 Identities=31% Similarity=0.407 Sum_probs=25.8
Q ss_pred EEEEeechhhHHHHHHHHHhCCCcEEEecC
Q 009293 78 IHFVGIGGSGLSALAKLALKQGFEVSGSDL 107 (538)
Q Consensus 78 v~vlG~G~sG~~~la~~l~~~G~~v~g~D~ 107 (538)
|.|||.|.+|.++ |..|++.|.+|.+.|.
T Consensus 3 v~IIG~Gi~G~s~-A~~L~~~G~~V~vle~ 31 (365)
T TIGR03364 3 LIIVGAGILGLAH-AYAAARRGLSVTVIER 31 (365)
T ss_pred EEEECCCHHHHHH-HHHHHHCCCeEEEEeC
Confidence 7899999999986 8888889999999884
No 424
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=55.68 E-value=41 Score=34.51 Aligned_cols=72 Identities=14% Similarity=0.153 Sum_probs=44.4
Q ss_pred ceEEEEeechhhHHHHHHHHHhCCC-cEEEecCCCChhHHHHHHCCCeEEeCCCCCCcCC-CCCCCCCCEEEEcCC
Q 009293 76 GWIHFVGIGGSGLSALAKLALKQGF-EVSGSDLVWSSYMEGLLEAGANLHIGHSVSNIQG-NDGSRFPNAVVASSA 149 (538)
Q Consensus 76 ~~v~vlG~G~sG~~~la~~l~~~G~-~v~g~D~~~~~~~~~~~~~Ga~~~~~~~~~~~~~-~~~~~~~d~vvvsp~ 149 (538)
.+|+|.|.|..|+.++ .+++..|. +|.+.|... +..+.+.+.|+..++.....++.. ......+|+++-..|
T Consensus 171 ~~VlV~G~G~vG~~ai-qlak~~G~~~Vi~~~~~~-~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G 244 (343)
T PRK09880 171 KRVFVSGVGPIGCLIV-AAVKTLGAAEIVCADVSP-RSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVSG 244 (343)
T ss_pred CEEEEECCCHHHHHHH-HHHHHcCCcEEEEEeCCH-HHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECCC
Confidence 4689999999999875 55566898 587877543 334566778997766422211110 000113788887765
No 425
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=55.67 E-value=14 Score=34.71 Aligned_cols=21 Identities=33% Similarity=0.548 Sum_probs=18.5
Q ss_pred EEEEeC--CCCchHHHHHHHHHH
Q 009293 183 LIAVSG--SHGKSTTASMLAYVL 203 (538)
Q Consensus 183 vI~VTG--TnGKTTTt~ml~~iL 203 (538)
+|||+| ..||||++.+|..+|
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 588998 568999999999998
No 426
>PLN00106 malate dehydrogenase
Probab=55.66 E-value=29 Score=35.75 Aligned_cols=75 Identities=12% Similarity=0.110 Sum_probs=43.2
Q ss_pred CceEEEEee-chhhHHHHHHHHHhCCC--cEEEecCCCCh-hHHHHHHCCCeEEe---CCCCCCcCCCCCCCCCCEEEEc
Q 009293 75 KGWIHFVGI-GGSGLSALAKLALKQGF--EVSGSDLVWSS-YMEGLLEAGANLHI---GHSVSNIQGNDGSRFPNAVVAS 147 (538)
Q Consensus 75 ~~~v~vlG~-G~sG~~~la~~l~~~G~--~v~g~D~~~~~-~~~~~~~~Ga~~~~---~~~~~~~~~~~~~~~~d~vvvs 147 (538)
++||.|+|. |..|.+. |.+|+.+|. ++...|.+..+ ...++........+ ....+... ..+..|+||..
T Consensus 18 ~~KV~IiGaaG~VG~~~-a~~l~~~~~~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~---~l~~aDiVVit 93 (323)
T PLN00106 18 GFKVAVLGAAGGIGQPL-SLLMKMNPLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQLGD---ALKGADLVIIP 93 (323)
T ss_pred CCEEEEECCCCHHHHHH-HHHHHhCCCCCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCCHHH---HcCCCCEEEEe
Confidence 357999999 9999874 777775554 78888875521 11123222221111 11211011 12368999999
Q ss_pred CCCCCC
Q 009293 148 SAIPQD 153 (538)
Q Consensus 148 p~i~~~ 153 (538)
-|+|..
T Consensus 94 AG~~~~ 99 (323)
T PLN00106 94 AGVPRK 99 (323)
T ss_pred CCCCCC
Confidence 888754
No 427
>PLN02858 fructose-bisphosphate aldolase
Probab=55.66 E-value=49 Score=41.08 Aligned_cols=110 Identities=20% Similarity=0.221 Sum_probs=64.4
Q ss_pred ceEEEEeechhhHHHHHHHHHhCCCcEEEecCCCChhHHHHHHCCCeEEeCCCCCCcCCCCCCCCCCEEEEcCCCCCCCH
Q 009293 76 GWIHFVGIGGSGLSALAKLALKQGFEVSGSDLVWSSYMEGLLEAGANLHIGHSVSNIQGNDGSRFPNAVVASSAIPQDNV 155 (538)
Q Consensus 76 ~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~d~vvvsp~i~~~~~ 155 (538)
++|.|||+|.-|.+ +|.-|...|++|.++|... +-.+.+.+.|+... ..+.... ..+|+|++... +..
T Consensus 325 ~~IGfIGlG~MG~~-mA~~L~~~G~~V~v~dr~~-~~~~~l~~~Ga~~~--~s~~e~~-----~~aDvVi~~V~---~~~ 392 (1378)
T PLN02858 325 KRIGFIGLGAMGFG-MASHLLKSNFSVCGYDVYK-PTLVRFENAGGLAG--NSPAEVA-----KDVDVLVIMVA---NEV 392 (1378)
T ss_pred CeEEEECchHHHHH-HHHHHHHCCCEEEEEeCCH-HHHHHHHHcCCeec--CCHHHHH-----hcCCEEEEecC---ChH
Confidence 56999999999986 4666677999999999543 23445666777542 2222211 25788888642 222
Q ss_pred HHHHHHHCCCCeeeHHHHHHHHhcCCcEEEEeCCCCchHHHHHHHHHHHH
Q 009293 156 EILHAKSVGVPIYKRDYWLAKLTEKYNLIAVSGSHGKSTTASMLAYVLKA 205 (538)
Q Consensus 156 ~l~~a~~~gi~vi~~~~~l~~~~~~~~vI~VTGTnGKTTTt~ml~~iL~~ 205 (538)
.+..... + ....+.. .....+|....|..=.++..+ +..+++
T Consensus 393 ~v~~Vl~-g-----~~g~~~~-l~~g~ivVd~STvsP~~~~~l-a~~l~~ 434 (1378)
T PLN02858 393 QAENVLF-G-----DLGAVSA-LPAGASIVLSSTVSPGFVIQL-ERRLEN 434 (1378)
T ss_pred HHHHHHh-c-----hhhHHhc-CCCCCEEEECCCCCHHHHHHH-HHHHHh
Confidence 2222110 0 0112222 134568888888887666666 566666
No 428
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=55.62 E-value=12 Score=39.10 Aligned_cols=31 Identities=29% Similarity=0.236 Sum_probs=26.9
Q ss_pred eEEEEeechhhHHHHHHHHHhCCCcEEEecCC
Q 009293 77 WIHFVGIGGSGLSALAKLALKQGFEVSGSDLV 108 (538)
Q Consensus 77 ~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~ 108 (538)
.|.|||.|..|.++ |..|+.+|.+|.+.|..
T Consensus 9 dViIVGaG~~Gl~~-A~~L~~~G~~v~liE~~ 39 (388)
T PRK07494 9 DIAVIGGGPAGLAA-AIALARAGASVALVAPE 39 (388)
T ss_pred CEEEECcCHHHHHH-HHHHhcCCCeEEEEeCC
Confidence 48899999999975 78889999999999843
No 429
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=55.62 E-value=12 Score=39.97 Aligned_cols=32 Identities=25% Similarity=0.254 Sum_probs=28.0
Q ss_pred ceEEEEeechhhHHHHHHHHHhCCCcEEEecCC
Q 009293 76 GWIHFVGIGGSGLSALAKLALKQGFEVSGSDLV 108 (538)
Q Consensus 76 ~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~ 108 (538)
.+|.|+|.|..|..+ |..|+.+|.+|...|.+
T Consensus 3 ~dVvVIGGGlAGleA-AlaLAr~Gl~V~LiE~r 34 (436)
T PRK05335 3 KPVNVIGAGLAGSEA-AWQLAKRGVPVELYEMR 34 (436)
T ss_pred CcEEEECCCHHHHHH-HHHHHhCCCcEEEEEcc
Confidence 358899999999986 88889999999999853
No 430
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=55.54 E-value=13 Score=38.43 Aligned_cols=104 Identities=16% Similarity=0.164 Sum_probs=59.9
Q ss_pred ceEEEEeechhhHHHHHHHHHhCCCcEEEecCCCChhHHHHHHCCCeEEeCCCCCCcCCCCCCCCCCEEEEcCCCCCCCH
Q 009293 76 GWIHFVGIGGSGLSALAKLALKQGFEVSGSDLVWSSYMEGLLEAGANLHIGHSVSNIQGNDGSRFPNAVVASSAIPQDNV 155 (538)
Q Consensus 76 ~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~d~vvvsp~i~~~~~ 155 (538)
++|.|||.|..|++. |+.|+..|.+|.++|....... .. +.. ........ ...|+|++.. |..+
T Consensus 147 ~~VgIIG~G~IG~~v-A~~L~~~G~~V~~~d~~~~~~~-~~----~~~--~~~l~ell-----~~aDiVil~l---P~t~ 210 (330)
T PRK12480 147 MTVAIIGTGRIGAAT-AKIYAGFGATITAYDAYPNKDL-DF----LTY--KDSVKEAI-----KDADIISLHV---PANK 210 (330)
T ss_pred CEEEEECCCHHHHHH-HHHHHhCCCEEEEEeCChhHhh-hh----hhc--cCCHHHHH-----hcCCEEEEeC---CCcH
Confidence 469999999999975 7778889999999995432110 00 111 11111111 2578887754 2232
Q ss_pred HHHHHHHCCCCeeeHHHHHHHHhcCCcEEEEeCCCCchHHHHHHHHHHHH
Q 009293 156 EILHAKSVGVPIYKRDYWLAKLTEKYNLIAVSGSHGKSTTASMLAYVLKA 205 (538)
Q Consensus 156 ~l~~a~~~gi~vi~~~~~l~~~~~~~~vI~VTGTnGKTTTt~ml~~iL~~ 205 (538)
...... . .+.+... +...+-|--+.|.---..-|...|+.
T Consensus 211 ~t~~li-------~-~~~l~~m--k~gavlIN~aRG~~vd~~aL~~aL~~ 250 (330)
T PRK12480 211 ESYHLF-------D-KAMFDHV--KKGAILVNAARGAVINTPDLIAAVND 250 (330)
T ss_pred HHHHHH-------h-HHHHhcC--CCCcEEEEcCCccccCHHHHHHHHHc
Confidence 222111 0 1333332 22467777778888877777788864
No 431
>KOG1324 consensus Dihydrofolate reductase [Coenzyme transport and metabolism]
Probab=55.39 E-value=29 Score=32.32 Aligned_cols=85 Identities=12% Similarity=0.203 Sum_probs=48.5
Q ss_pred ccCCCCCCceEEEeeeC-CeEEEEECCC-CHHHHHHHHHHHHhhCCC---CeEEEEEccCCCCchHHHHHHHHHHhc--c
Q 009293 414 SKFMGVSRRFDLIGTIY-GCHIYDDFAH-HPTEVRAVLQAARQRFPN---KALIAVFQPHTYSRLVVLKDDFANALS--E 486 (538)
Q Consensus 414 ~~f~~~~gR~E~v~~~~-g~~ii~D~Ah-np~s~~a~l~~l~~~~~~---~r~i~V~g~~~~~r~~~~~~~~~~~~~--~ 486 (538)
.+++|++||+.+|-... +..+..|.++ --.++++||+.+.+- |- =-.+.|+|. + ..+.+++. .
T Consensus 61 ~k~RPL~gRiNiVLSR~~~~~~~~t~~~~~~~slesAl~lL~~p-p~~~~ve~vfvIGG----~-----~vy~~al~~p~ 130 (190)
T KOG1324|consen 61 EKFRPLPGRINVVLSRSLKEDFAPTENVFLSSSLESALDLLEEP-PSSNSVEMVFVIGG----S-----EVYSEALNSPR 130 (190)
T ss_pred cccCCCCCceEEEEecccCcCcCCccCEEEeccHHHHHHhhcCC-ccccceeEEEEEcC----H-----HHHHHHHcCcC
Confidence 46899999999885321 1112222111 236788888888753 21 123455553 1 23455564 7
Q ss_pred CCEEEEeccCCCCc---ccccCcHH
Q 009293 487 ADQVVVSAVLVFWL---IIFAVSSF 508 (538)
Q Consensus 487 ~D~vi~~~~~~~~~---~~~~~~~~ 508 (538)
+|.+.+|.+....+ ..+.++.+
T Consensus 131 ~~~i~~T~I~~~~~cDtffP~id~s 155 (190)
T KOG1324|consen 131 CDAIHITEIFQSFECDTFFPAIDTS 155 (190)
T ss_pred cceEEEEEecccCCcccccccCChH
Confidence 89999999874441 34555554
No 432
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=55.17 E-value=1.3e+02 Score=25.58 Aligned_cols=14 Identities=43% Similarity=0.857 Sum_probs=11.0
Q ss_pred eEEEEeechhhHHH
Q 009293 77 WIHFVGIGGSGLSA 90 (538)
Q Consensus 77 ~v~vlG~G~sG~~~ 90 (538)
+|+|+|.|.|+..+
T Consensus 1 ~I~i~G~G~S~~~a 14 (119)
T cd05017 1 NIVILGMGGSGIGG 14 (119)
T ss_pred CEEEEEcCHHHHHH
Confidence 37899999988754
No 433
>COG1926 Predicted phosphoribosyltransferases [General function prediction only]
Probab=54.95 E-value=90 Score=30.01 Aligned_cols=82 Identities=23% Similarity=0.129 Sum_probs=47.9
Q ss_pred HHHHHhccCCCCCCceEEEeeeCCeEEEEECCCCHHHHHHHHHHHHhhCCCCeEEEEEccCCCCchHHHHHHHHHHhccC
Q 009293 408 CLKLPLSKFMGVSRRFDLIGTIYGCHIYDDFAHHPTEVRAVLQAARQRFPNKALIAVFQPHTYSRLVVLKDDFANALSEA 487 (538)
Q Consensus 408 ~I~~~L~~f~~~~gR~E~v~~~~g~~ii~D~Ahnp~s~~a~l~~l~~~~~~~r~i~V~g~~~~~r~~~~~~~~~~~~~~~ 487 (538)
++.+....+.+-..+...- .+.+.++||+-.+-.+|.++++++++..+ ++ |+|.-|-. . .+ ......+.+
T Consensus 105 El~rrr~~yr~~~~~~~~~--g~~VIlVDDGiATGatm~aAi~~~r~~~~-~~-IviAVPV~-p--~~---a~~~l~s~~ 174 (220)
T COG1926 105 ELLRRREAYRGGRPVPSLK--GRTVILVDDGIATGATMKAAVRALRAKGP-KE-IVIAVPVA-P--ED---AAAELESEA 174 (220)
T ss_pred HHHHHHHHHcCCCCCCCCC--CCEEEEEeCCcchhHHHHHHHHHHHhcCC-ce-EEEEcccC-C--HH---HHHHHHhhc
Confidence 3444555555333333322 34577778898899999999999997533 33 44443322 1 12 223334568
Q ss_pred CEEEEeccCCCC
Q 009293 488 DQVVVSAVLVFW 499 (538)
Q Consensus 488 D~vi~~~~~~~~ 499 (538)
|.+++...+..+
T Consensus 175 D~vvc~~~P~~F 186 (220)
T COG1926 175 DEVVCLYMPAPF 186 (220)
T ss_pred CeEEEEcCCccH
Confidence 998887765443
No 434
>PTZ00301 uridine kinase; Provisional
Probab=54.95 E-value=14 Score=35.60 Aligned_cols=24 Identities=29% Similarity=0.455 Sum_probs=20.0
Q ss_pred CcEEEEeC--CCCchHHHHHHHHHHH
Q 009293 181 YNLIAVSG--SHGKSTTASMLAYVLK 204 (538)
Q Consensus 181 ~~vI~VTG--TnGKTTTt~ml~~iL~ 204 (538)
..+|||+| ..||||.+..|.+-|.
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~ 28 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELM 28 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHH
Confidence 46999999 6899999998876664
No 435
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=54.92 E-value=40 Score=36.20 Aligned_cols=82 Identities=10% Similarity=0.060 Sum_probs=52.0
Q ss_pred CceEEEEeechhhHHHHHHHHHhCCCcEEEecCCC------Ch-----hHHHHHHCCCeEEeCCCCCCcC-----CC-CC
Q 009293 75 KGWIHFVGIGGSGLSALAKLALKQGFEVSGSDLVW------SS-----YMEGLLEAGANLHIGHSVSNIQ-----GN-DG 137 (538)
Q Consensus 75 ~~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~------~~-----~~~~~~~~Ga~~~~~~~~~~~~-----~~-~~ 137 (538)
.+++.|+|.|.+|+-. |..|+..|.+|+..+... ++ ..+.+.+.|+.+..+.....+. .. ..
T Consensus 148 ~~~vvViGgG~ig~E~-A~~l~~~g~~Vtli~~~~~l~~~~d~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~v~~~~g~ 226 (438)
T PRK13512 148 VDKALVVGAGYISLEV-LENLYERGLHPTLIHRSDKINKLMDADMNQPILDELDKREIPYRLNEEIDAINGNEVTFKSGK 226 (438)
T ss_pred CCEEEEECCCHHHHHH-HHHHHhCCCcEEEEecccccchhcCHHHHHHHHHHHHhcCCEEEECCeEEEEeCCEEEECCCC
Confidence 3578999999999985 788888999999887532 11 1234667798876543211110 00 00
Q ss_pred CCCCCEEEEcCCCCCCCHHH
Q 009293 138 SRFPNAVVASSAIPQDNVEI 157 (538)
Q Consensus 138 ~~~~d~vvvsp~i~~~~~~l 157 (538)
.-.+|.+++.+|..+..+.+
T Consensus 227 ~~~~D~vl~a~G~~pn~~~l 246 (438)
T PRK13512 227 VEHYDMIIEGVGTHPNSKFI 246 (438)
T ss_pred EEEeCEEEECcCCCcChHHH
Confidence 11478999999887765543
No 436
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=54.88 E-value=17 Score=35.52 Aligned_cols=35 Identities=34% Similarity=0.378 Sum_probs=26.9
Q ss_pred eEEEEeechhhHHHHHHH-----HHhCCCcEEEecCCCCh
Q 009293 77 WIHFVGIGGSGLSALAKL-----ALKQGFEVSGSDLVWSS 111 (538)
Q Consensus 77 ~v~vlG~G~sG~~~la~~-----l~~~G~~v~g~D~~~~~ 111 (538)
+|+|-|-||+|.+++|.+ +...|++|.+.|.+++.
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~~VLvVDaDpd~ 41 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGYNVLVVDADPDS 41 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCceEEEEeCCCCC
Confidence 578999999998877666 33445999999976643
No 437
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=54.79 E-value=12 Score=40.35 Aligned_cols=32 Identities=25% Similarity=0.197 Sum_probs=27.6
Q ss_pred ceEEEEeechhhHHHHHHHHHhCCCcEEEecCC
Q 009293 76 GWIHFVGIGGSGLSALAKLALKQGFEVSGSDLV 108 (538)
Q Consensus 76 ~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~ 108 (538)
-.|+|||.|.+|.++ |..|+.+|.+|...|..
T Consensus 40 ~DViIVGaGPAG~~a-A~~LA~~G~~VlllEr~ 71 (450)
T PLN00093 40 LRVAVIGGGPAGACA-AETLAKGGIETFLIERK 71 (450)
T ss_pred CeEEEECCCHHHHHH-HHHHHhCCCcEEEEecC
Confidence 358899999999986 78899999999999843
No 438
>cd03109 DTBS Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms. The enzyme catalyzes formation of the ureido ring of dethiobiotin from (7R,8S)-7,8-diaminononanoic acid (DAPA) and carbon dioxide. The enzyme utilizes carbon dioxide instead of hydrogen carbonate as substrate and is dependent on ATP and divalent metal ions as cofactors.
Probab=54.65 E-value=13 Score=32.84 Aligned_cols=30 Identities=27% Similarity=0.367 Sum_probs=23.9
Q ss_pred EEEeCC-CCchHHHHHHHHHHHHcCCCeEEE
Q 009293 184 IAVSGS-HGKSTTASMLAYVLKAMGDDLTAI 213 (538)
Q Consensus 184 I~VTGT-nGKTTTt~ml~~iL~~~G~~v~~~ 213 (538)
+-|||+ .|||+++.-+...|++.|.+++.+
T Consensus 3 ~~~~~~~~Gkt~~~~~l~~~l~~~~~~v~~~ 33 (134)
T cd03109 3 GFGTGTDIGKTVATAILARALKEKGYRVAPL 33 (134)
T ss_pred EEeCCCCcCHHHHHHHHHHHHHHCCCeEEEE
Confidence 345553 699999999999999999987643
No 439
>PRK08618 ornithine cyclodeaminase; Validated
Probab=54.60 E-value=32 Score=35.41 Aligned_cols=71 Identities=10% Similarity=0.169 Sum_probs=42.8
Q ss_pred CCCceEEEEeechhhHHHHHHHHHhCC-CcEEEecCCCC---hhHHHHHH-CCCeEEeCCCCCCcCCCCCCCCCCEEEEc
Q 009293 73 NRKGWIHFVGIGGSGLSALAKLALKQG-FEVSGSDLVWS---SYMEGLLE-AGANLHIGHSVSNIQGNDGSRFPNAVVAS 147 (538)
Q Consensus 73 ~~~~~v~vlG~G~sG~~~la~~l~~~G-~~v~g~D~~~~---~~~~~~~~-~Ga~~~~~~~~~~~~~~~~~~~~d~vvvs 147 (538)
.+.+++.|+|.|+.|+..++.++...| .+|..+|.... ++.+.+.+ .|+.+....+.+... ...|+|+..
T Consensus 125 ~~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-----~~aDiVi~a 199 (325)
T PRK08618 125 EDAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEIYVVNSADEAI-----EEADIIVTV 199 (325)
T ss_pred CCCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHH-----hcCCEEEEc
Confidence 346789999999999987766665556 57778876533 23333332 365544333322211 257888875
Q ss_pred C
Q 009293 148 S 148 (538)
Q Consensus 148 p 148 (538)
.
T Consensus 200 T 200 (325)
T PRK08618 200 T 200 (325)
T ss_pred c
Confidence 4
No 440
>PLN02796 D-glycerate 3-kinase
Probab=54.58 E-value=15 Score=38.14 Aligned_cols=30 Identities=30% Similarity=0.443 Sum_probs=24.3
Q ss_pred CcEEEEeCCC--CchHHHHHHHHHHHHcCCCe
Q 009293 181 YNLIAVSGSH--GKSTTASMLAYVLKAMGDDL 210 (538)
Q Consensus 181 ~~vI~VTGTn--GKTTTt~ml~~iL~~~G~~v 210 (538)
.-+|||+|.+ ||||++..|..+|...|.++
T Consensus 100 pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~ 131 (347)
T PLN02796 100 PLVIGISAPQGCGKTTLVFALVYLFNATGRRA 131 (347)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHhcccCCce
Confidence 3479999965 79999999999998766543
No 441
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=54.51 E-value=49 Score=38.22 Aligned_cols=33 Identities=18% Similarity=0.286 Sum_probs=27.4
Q ss_pred ceEEEEeechhhHHHHHHHHHhCCCcEEEecCCC
Q 009293 76 GWIHFVGIGGSGLSALAKLALKQGFEVSGSDLVW 109 (538)
Q Consensus 76 ~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~ 109 (538)
++|.|||.|.-|.+ +|..++..|++|...|...
T Consensus 336 ~~v~ViGaG~MG~g-IA~~~a~~G~~V~l~d~~~ 368 (737)
T TIGR02441 336 KTLAVLGAGLMGAG-IAQVSVDKGLKTVLKDATP 368 (737)
T ss_pred cEEEEECCCHhHHH-HHHHHHhCCCcEEEecCCH
Confidence 56999999987776 5677788999999999764
No 442
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=54.49 E-value=20 Score=39.34 Aligned_cols=48 Identities=25% Similarity=0.187 Sum_probs=36.5
Q ss_pred ceEEEEeechhhHHHHHHHHHhCCCcEEEecCCCChhHHHHHHCCCeEEe
Q 009293 76 GWIHFVGIGGSGLSALAKLALKQGFEVSGSDLVWSSYMEGLLEAGANLHI 125 (538)
Q Consensus 76 ~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~~~~~~~~~~Ga~~~~ 125 (538)
.+++|+|.|..|+.+ +..+...|.+|.+.|.+.. -.+.+.+.|+..+.
T Consensus 165 akVlViGaG~iGl~A-a~~ak~lGA~V~v~d~~~~-rle~a~~lGa~~v~ 212 (511)
T TIGR00561 165 AKVLVIGAGVAGLAA-IGAANSLGAIVRAFDTRPE-VKEQVQSMGAEFLE 212 (511)
T ss_pred CEEEEECCCHHHHHH-HHHHHHCCCEEEEEeCCHH-HHHHHHHcCCeEEe
Confidence 468999999999987 5666778999999996543 34556667887743
No 443
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=54.48 E-value=13 Score=36.78 Aligned_cols=30 Identities=37% Similarity=0.421 Sum_probs=26.4
Q ss_pred eEEEEeechhhHHHHHHHHHhCCCcEEEecC
Q 009293 77 WIHFVGIGGSGLSALAKLALKQGFEVSGSDL 107 (538)
Q Consensus 77 ~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~ 107 (538)
.|.|||.|.+|++| |..|+..|.+|...+.
T Consensus 23 DVvIVGgGpAGL~a-A~~la~~G~~V~vlEk 52 (254)
T TIGR00292 23 DVIIVGAGPSGLTA-AYYLAKNGLKVCVLER 52 (254)
T ss_pred CEEEECCCHHHHHH-HHHHHHCCCcEEEEec
Confidence 37899999999987 7888999999999884
No 444
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=54.41 E-value=12 Score=39.56 Aligned_cols=29 Identities=31% Similarity=0.295 Sum_probs=24.0
Q ss_pred EEEEeechhhHHHHHHHHHhCCCcEEEecC
Q 009293 78 IHFVGIGGSGLSALAKLALKQGFEVSGSDL 107 (538)
Q Consensus 78 v~vlG~G~sG~~~la~~l~~~G~~v~g~D~ 107 (538)
|+|||.|.+|++| |..++.+|.+|.+.+.
T Consensus 2 VvVIG~G~AGl~A-A~~Aae~G~~V~lvek 30 (417)
T PF00890_consen 2 VVVIGGGLAGLAA-AIEAAEAGAKVLLVEK 30 (417)
T ss_dssp EEEE-SSHHHHHH-HHHHHHTTT-EEEEES
T ss_pred EEEECCCHHHHHH-HHHHhhhcCeEEEEEe
Confidence 6899999999987 7888999999999883
No 445
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=54.26 E-value=46 Score=34.06 Aligned_cols=67 Identities=24% Similarity=0.147 Sum_probs=43.6
Q ss_pred ceEEEEeechhhHHHHHHHHHhCCCcEEEecCCCChhHHHHHHCCCeEEeCCCCCCcCCCCCCCCCCEEEEcCCC
Q 009293 76 GWIHFVGIGGSGLSALAKLALKQGFEVSGSDLVWSSYMEGLLEAGANLHIGHSVSNIQGNDGSRFPNAVVASSAI 150 (538)
Q Consensus 76 ~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~d~vvvsp~i 150 (538)
.+|+|.|.|..|..+ +.+++..|.+|.+.+.+.. -.+.+.+.|+..++....... ...|.++...+.
T Consensus 167 ~~VlV~G~g~iG~~a-~~~a~~~G~~vi~~~~~~~-~~~~a~~~Ga~~vi~~~~~~~------~~~d~~i~~~~~ 233 (329)
T TIGR02822 167 GRLGLYGFGGSAHLT-AQVALAQGATVHVMTRGAA-ARRLALALGAASAGGAYDTPP------EPLDAAILFAPA 233 (329)
T ss_pred CEEEEEcCCHHHHHH-HHHHHHCCCeEEEEeCChH-HHHHHHHhCCceeccccccCc------ccceEEEECCCc
Confidence 368999999999876 4566778999988775433 345677889977654221110 136776665443
No 446
>TIGR00337 PyrG CTP synthase. CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).
Probab=54.22 E-value=33 Score=37.63 Aligned_cols=31 Identities=42% Similarity=0.499 Sum_probs=27.5
Q ss_pred cEEEEeC----CCCchHHHHHHHHHHHHcCCCeEE
Q 009293 182 NLIAVSG----SHGKSTTASMLAYVLKAMGDDLTA 212 (538)
Q Consensus 182 ~vI~VTG----TnGKTTTt~ml~~iL~~~G~~v~~ 212 (538)
+.|.||| +=||+.|++-|..+|+..|++|..
T Consensus 2 k~i~vtGgv~s~lgkgi~~as~g~ll~~~g~~v~~ 36 (525)
T TIGR00337 2 KYIFVTGGVVSSLGKGITAASIGRLLKARGLKVTI 36 (525)
T ss_pred cEEEEcCCcccCcchHHHHHHHHHHHHhCCCceEE
Confidence 5788888 569999999999999999999764
No 447
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=54.09 E-value=14 Score=39.01 Aligned_cols=32 Identities=25% Similarity=0.304 Sum_probs=27.8
Q ss_pred ceEEEEeechhhHHHHHHHHHhCCCcEEEecCC
Q 009293 76 GWIHFVGIGGSGLSALAKLALKQGFEVSGSDLV 108 (538)
Q Consensus 76 ~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~ 108 (538)
..|+|+|.|..|+++ |..|+..|.+|...+..
T Consensus 3 ~dV~IvGaG~aGl~l-A~~L~~~G~~V~l~E~~ 34 (387)
T COG0654 3 LDVAIVGAGPAGLAL-ALALARAGLDVTLLERA 34 (387)
T ss_pred CCEEEECCCHHHHHH-HHHHHhCCCcEEEEccC
Confidence 358899999999974 89999999999999843
No 448
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=54.06 E-value=46 Score=34.27 Aligned_cols=70 Identities=19% Similarity=0.254 Sum_probs=43.6
Q ss_pred ceEEEEeechhhHHHHHHHHHhCCC-cEEEecCCCCh----hHH---HHHHCCC--eEEeCCCCCCcCCCCCCCCCCEEE
Q 009293 76 GWIHFVGIGGSGLSALAKLALKQGF-EVSGSDLVWSS----YME---GLLEAGA--NLHIGHSVSNIQGNDGSRFPNAVV 145 (538)
Q Consensus 76 ~~v~vlG~G~sG~~~la~~l~~~G~-~v~g~D~~~~~----~~~---~~~~~Ga--~~~~~~~~~~~~~~~~~~~~d~vv 145 (538)
+||.|||.|..|.+ +|..++.+|. ++...|.++.. .++ .+...+. .+....+.+.+ +.+|+||
T Consensus 7 ~KI~IIGaG~vG~~-ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~~~l------~~aDiVI 79 (321)
T PTZ00082 7 RKISLIGSGNIGGV-MAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNYEDI------AGSDVVI 79 (321)
T ss_pred CEEEEECCCHHHHH-HHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCHHHh------CCCCEEE
Confidence 67999999998876 4788888894 88899976542 111 1111222 23221222333 3689999
Q ss_pred EcCCCCC
Q 009293 146 ASSAIPQ 152 (538)
Q Consensus 146 vsp~i~~ 152 (538)
..-+++.
T Consensus 80 ~tag~~~ 86 (321)
T PTZ00082 80 VTAGLTK 86 (321)
T ss_pred ECCCCCC
Confidence 9887764
No 449
>PLN02928 oxidoreductase family protein
Probab=53.92 E-value=14 Score=38.43 Aligned_cols=32 Identities=19% Similarity=0.249 Sum_probs=27.7
Q ss_pred ceEEEEeechhhHHHHHHHHHhCCCcEEEecCC
Q 009293 76 GWIHFVGIGGSGLSALAKLALKQGFEVSGSDLV 108 (538)
Q Consensus 76 ~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~ 108 (538)
+++.|||+|..|+.. |+.|..-|.+|.++|..
T Consensus 160 ktvGIiG~G~IG~~v-A~~l~afG~~V~~~dr~ 191 (347)
T PLN02928 160 KTVFILGYGAIGIEL-AKRLRPFGVKLLATRRS 191 (347)
T ss_pred CEEEEECCCHHHHHH-HHHHhhCCCEEEEECCC
Confidence 579999999999975 77778899999999964
No 450
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=53.89 E-value=21 Score=27.50 Aligned_cols=27 Identities=44% Similarity=0.587 Sum_probs=20.5
Q ss_pred EEEEeCC--CCchHHHHHHHHHHHHcCCCeE
Q 009293 183 LIAVSGS--HGKSTTASMLAYVLKAMGDDLT 211 (538)
Q Consensus 183 vI~VTGT--nGKTTTt~ml~~iL~~~G~~v~ 211 (538)
+|+|+|. .||||.+..+++.| .+.++.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l--~~~~~~ 29 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL--GGRSVV 29 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--cCCCEE
Confidence 4678884 58999999999999 455543
No 451
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=53.79 E-value=18 Score=41.76 Aligned_cols=33 Identities=24% Similarity=0.409 Sum_probs=28.9
Q ss_pred CCcEEEEeCCC---CchHHHHHHHHHHHHcCCCeEE
Q 009293 180 KYNLIAVSGSH---GKSTTASMLAYVLKAMGDDLTA 212 (538)
Q Consensus 180 ~~~vI~VTGTn---GKTTTt~ml~~iL~~~G~~v~~ 212 (538)
..++|+||++. ||||++.-++..|...|++|..
T Consensus 530 ~~kvI~vtS~~~g~GKTtva~nLA~~la~~G~rVLl 565 (726)
T PRK09841 530 ENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLF 565 (726)
T ss_pred CCeEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEE
Confidence 56899999865 9999999999999999998643
No 452
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=53.67 E-value=12 Score=39.36 Aligned_cols=30 Identities=23% Similarity=0.201 Sum_probs=26.2
Q ss_pred eEEEEeechhhHHHHHHHHHhC--CCcEEEecC
Q 009293 77 WIHFVGIGGSGLSALAKLALKQ--GFEVSGSDL 107 (538)
Q Consensus 77 ~v~vlG~G~sG~~~la~~l~~~--G~~v~g~D~ 107 (538)
.|.|||.|.+|.++ |..|+.+ |.+|...|.
T Consensus 4 dVvIIGgGi~G~s~-A~~La~~~~g~~V~llE~ 35 (393)
T PRK11728 4 DFVIIGGGIVGLST-AMQLQERYPGARIAVLEK 35 (393)
T ss_pred cEEEECCcHHHHHH-HHHHHHhCCCCeEEEEeC
Confidence 37899999999985 8888888 999999984
No 453
>PLN02602 lactate dehydrogenase
Probab=53.65 E-value=46 Score=34.71 Aligned_cols=70 Identities=17% Similarity=0.205 Sum_probs=41.9
Q ss_pred ceEEEEeechhhHHHHHHHHHhCCC--cEEEecCCCChh---HHHHHH----CC-CeEEeCCCCCCcCCCCCCCCCCEEE
Q 009293 76 GWIHFVGIGGSGLSALAKLALKQGF--EVSGSDLVWSSY---MEGLLE----AG-ANLHIGHSVSNIQGNDGSRFPNAVV 145 (538)
Q Consensus 76 ~~v~vlG~G~sG~~~la~~l~~~G~--~v~g~D~~~~~~---~~~~~~----~G-a~~~~~~~~~~~~~~~~~~~~d~vv 145 (538)
+||.|+|.|..|.+. |..|..+|. ++...|.+.+.- +.++.. .+ ..+....+..++ +.+|+||
T Consensus 38 ~KI~IIGaG~VG~~~-a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~~dy~~~------~daDiVV 110 (350)
T PLN02602 38 TKVSVVGVGNVGMAI-AQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILASTDYAVT------AGSDLCI 110 (350)
T ss_pred CEEEEECCCHHHHHH-HHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeCCCHHHh------CCCCEEE
Confidence 579999999999875 666766664 577888754311 111211 11 222211222222 3689999
Q ss_pred EcCCCCC
Q 009293 146 ASSAIPQ 152 (538)
Q Consensus 146 vsp~i~~ 152 (538)
+.-|.++
T Consensus 111 itAG~~~ 117 (350)
T PLN02602 111 VTAGARQ 117 (350)
T ss_pred ECCCCCC
Confidence 9988865
No 454
>PRK08013 oxidoreductase; Provisional
Probab=53.58 E-value=12 Score=39.44 Aligned_cols=31 Identities=23% Similarity=0.128 Sum_probs=27.1
Q ss_pred eEEEEeechhhHHHHHHHHHhCCCcEEEecCC
Q 009293 77 WIHFVGIGGSGLSALAKLALKQGFEVSGSDLV 108 (538)
Q Consensus 77 ~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~ 108 (538)
.|+|+|.|..|.++ |..|+.+|.+|...|..
T Consensus 5 dV~IvGaGpaGl~~-A~~La~~G~~v~viE~~ 35 (400)
T PRK08013 5 DVVIAGGGMVGLAV-ACGLQGSGLRVAVLEQR 35 (400)
T ss_pred CEEEECcCHHHHHH-HHHHhhCCCEEEEEeCC
Confidence 48899999999986 78889999999999843
No 455
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
Probab=53.51 E-value=73 Score=32.89 Aligned_cols=89 Identities=18% Similarity=0.150 Sum_probs=49.1
Q ss_pred eEEEEeechhhHHHHHHHHHhCC----CcEE-EecCCCChhHHHHHHCC--------------CeEEe-------C--CC
Q 009293 77 WIHFVGIGGSGLSALAKLALKQG----FEVS-GSDLVWSSYMEGLLEAG--------------ANLHI-------G--HS 128 (538)
Q Consensus 77 ~v~vlG~G~sG~~~la~~l~~~G----~~v~-g~D~~~~~~~~~~~~~G--------------a~~~~-------~--~~ 128 (538)
+|.|.|.|+.|+..+..++ .++ .++. .+|....+++..+.+.+ -.+.+ - .+
T Consensus 1 ~IaInGfGrIGR~vlr~l~-e~~~~~~~~vvaInd~~~~~~~ayll~yDS~hg~~~~~v~~~~~~l~v~g~~i~v~~~~~ 79 (325)
T TIGR01532 1 RVAINGFGRIGRNVLRALY-ESGERLGIEVVALNELADQASMAHLLRYDTSHGRFPGEVKVDGDCLHVNGDCIRVLHSPT 79 (325)
T ss_pred CEEEECCCHHHHHHHHHHH-hcCCCCCeEEEEEecCCCHHHHHHHHhhCccCCCCCCcEEEeCCEEEECCeEEEEEEcCC
Confidence 3789999999998765544 333 4444 45544445555554432 11111 1 12
Q ss_pred CCCcCCCCCCCCCCEEEEcCCCCCCCHHHHHHHHCCCCee
Q 009293 129 VSNIQGNDGSRFPNAVVASSAIPQDNVEILHAKSVGVPIY 168 (538)
Q Consensus 129 ~~~~~~~~~~~~~d~vvvsp~i~~~~~~l~~a~~~gi~vi 168 (538)
+.++++ .....|+|+-+.|..........+.+.|..++
T Consensus 80 p~~~~w--~~~gvDiVie~tG~~~s~e~a~~~l~aGa~~V 117 (325)
T TIGR01532 80 PEALPW--RALGVDLVLDCTGVYGNREQGERHIRAGAKRV 117 (325)
T ss_pred hhhccc--cccCCCEEEEccchhccHHHHHHHHHcCCeEE
Confidence 222321 11368999998887666555555555665443
No 456
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=53.49 E-value=12 Score=35.73 Aligned_cols=22 Identities=41% Similarity=0.546 Sum_probs=0.0
Q ss_pred CCcEEEEeC--CCCchHHHHHHHH
Q 009293 180 KYNLIAVSG--SHGKSTTASMLAY 201 (538)
Q Consensus 180 ~~~vI~VTG--TnGKTTTt~ml~~ 201 (538)
...+||+|| -.||||++.+++.
T Consensus 1 ~~~iIglTG~igsGKStva~~~~~ 24 (201)
T COG0237 1 MMLIIGLTGGIGSGKSTVAKILAE 24 (201)
T ss_pred CceEEEEecCCCCCHHHHHHHHHH
No 457
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=53.38 E-value=12 Score=39.11 Aligned_cols=30 Identities=23% Similarity=0.190 Sum_probs=26.3
Q ss_pred eEEEEeechhhHHHHHHHHHhC---CCcEEEecC
Q 009293 77 WIHFVGIGGSGLSALAKLALKQ---GFEVSGSDL 107 (538)
Q Consensus 77 ~v~vlG~G~sG~~~la~~l~~~---G~~v~g~D~ 107 (538)
+|+|||.|.+|.++ |..|+.+ |.+|.+.|.
T Consensus 5 dv~IvGaG~aGl~~-A~~L~~~~~~G~~v~v~E~ 37 (395)
T PRK05732 5 DVIIVGGGMAGATL-ALALSRLSHGGLPVALIEA 37 (395)
T ss_pred CEEEECcCHHHHHH-HHHhhhcccCCCEEEEEeC
Confidence 48899999999975 8888887 999999984
No 458
>PRK01906 tetraacyldisaccharide 4'-kinase; Provisional
Probab=53.38 E-value=23 Score=36.76 Aligned_cols=35 Identities=26% Similarity=0.318 Sum_probs=29.7
Q ss_pred CCcEEEE----eCCCCchHHHHHHHHHHHHcCCCeEEEe
Q 009293 180 KYNLIAV----SGSHGKSTTASMLAYVLKAMGDDLTAIV 214 (538)
Q Consensus 180 ~~~vI~V----TGTnGKTTTt~ml~~iL~~~G~~v~~~~ 214 (538)
..|||.| .|-.|||-++..|+..|++.|++++.+.
T Consensus 55 pvPVIsVGNitvGGTGKTP~v~~La~~l~~~G~~~~IlS 93 (338)
T PRK01906 55 GVPVVVVGNVTVGGTGKTPTVIALVDALRAAGFTPGVVS 93 (338)
T ss_pred CCCEEEECCccCCCCChHHHHHHHHHHHHHcCCceEEEe
Confidence 4578877 4889999999999999999999976543
No 459
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=53.21 E-value=13 Score=42.37 Aligned_cols=31 Identities=19% Similarity=0.215 Sum_probs=27.4
Q ss_pred ceEEEEeechhhHHHHHHHHHhCCCcEEEecC
Q 009293 76 GWIHFVGIGGSGLSALAKLALKQGFEVSGSDL 107 (538)
Q Consensus 76 ~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~ 107 (538)
..|.|||.|.+|.++ |..|+.+|.+|.+.|.
T Consensus 261 ~dVvIIGaGIaG~s~-A~~La~~G~~V~VlE~ 291 (662)
T PRK01747 261 RDAAIIGGGIAGAAL-ALALARRGWQVTLYEA 291 (662)
T ss_pred CCEEEECccHHHHHH-HHHHHHCCCeEEEEec
Confidence 358999999999986 8888999999999984
No 460
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=53.12 E-value=13 Score=39.28 Aligned_cols=30 Identities=17% Similarity=0.165 Sum_probs=26.5
Q ss_pred eEEEEeechhhHHHHHHHHHhCCCcEEEecC
Q 009293 77 WIHFVGIGGSGLSALAKLALKQGFEVSGSDL 107 (538)
Q Consensus 77 ~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~ 107 (538)
.|+|+|.|..|.++ |..|+..|.+|...|.
T Consensus 6 dV~IvGaG~~Gl~~-A~~L~~~G~~v~viE~ 35 (405)
T PRK08850 6 DVAIIGGGMVGLAL-AAALKESDLRIAVIEG 35 (405)
T ss_pred CEEEECccHHHHHH-HHHHHhCCCEEEEEcC
Confidence 48999999999986 7888889999999984
No 461
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=53.09 E-value=14 Score=39.02 Aligned_cols=30 Identities=23% Similarity=0.139 Sum_probs=25.4
Q ss_pred eEEEEeechhhHHHHHHHHHhCCCcEEEecC
Q 009293 77 WIHFVGIGGSGLSALAKLALKQGFEVSGSDL 107 (538)
Q Consensus 77 ~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~ 107 (538)
.|+|||.|.+|.++ |..|+..|.+|.+.|.
T Consensus 3 DvvIIGaG~aGlsa-A~~La~~G~~V~viEk 32 (377)
T TIGR00031 3 DYIIVGAGLSGIVL-ANILAQLNKRVLVVEK 32 (377)
T ss_pred cEEEECCCHHHHHH-HHHHHhCCCeEEEEec
Confidence 37899999999987 6677788999999884
No 462
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=53.01 E-value=36 Score=34.70 Aligned_cols=95 Identities=9% Similarity=0.022 Sum_probs=54.3
Q ss_pred CceEEEEeechhhHHHHHHHHHhCCCcEEE-ecCCCC-hhHHHHHHCCCeEEeCCCCCCcCCCCCCCCCCEEEEcCCCCC
Q 009293 75 KGWIHFVGIGGSGLSALAKLALKQGFEVSG-SDLVWS-SYMEGLLEAGANLHIGHSVSNIQGNDGSRFPNAVVASSAIPQ 152 (538)
Q Consensus 75 ~~~v~vlG~G~sG~~~la~~l~~~G~~v~g-~D~~~~-~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~d~vvvsp~i~~ 152 (538)
+-+|.|||.|..|..-+..+++.++.++.+ .|.+.+ +-...+.+.|+.......+.-+..+++ +..|+|+...+-..
T Consensus 4 klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A~~~Gi~~~~~~ie~LL~~~~~-~dIDiVf~AT~a~~ 82 (302)
T PRK08300 4 KLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARARRLGVATSAEGIDGLLAMPEF-DDIDIVFDATSAGA 82 (302)
T ss_pred CCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHHHcCCCcccCCHHHHHhCcCC-CCCCEEEECCCHHH
Confidence 356899999999987667777767777763 344332 223445667876543211111110000 24788888654322
Q ss_pred CCHHHHHHHHCCCCeeeH
Q 009293 153 DNVEILHAKSVGVPIYKR 170 (538)
Q Consensus 153 ~~~~l~~a~~~gi~vi~~ 170 (538)
......++.+.|+.++..
T Consensus 83 H~e~a~~a~eaGk~VID~ 100 (302)
T PRK08300 83 HVRHAAKLREAGIRAIDL 100 (302)
T ss_pred HHHHHHHHHHcCCeEEEC
Confidence 223444566788888876
No 463
>PRK07574 formate dehydrogenase; Provisional
Probab=52.98 E-value=74 Score=33.70 Aligned_cols=109 Identities=17% Similarity=0.151 Sum_probs=64.4
Q ss_pred ceEEEEeechhhHHHHHHHHHhCCCcEEEecCCCChhHHHHHHCCCeEEeCCCCCCcCCCCCCCCCCEEEEcCCCCCCCH
Q 009293 76 GWIHFVGIGGSGLSALAKLALKQGFEVSGSDLVWSSYMEGLLEAGANLHIGHSVSNIQGNDGSRFPNAVVASSAIPQDNV 155 (538)
Q Consensus 76 ~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~d~vvvsp~i~~~~~ 155 (538)
++|.|||.|..|+.. |+.|+.-|.+|.++|..... .....+.|+..... .+++. +.+|+|++.- |..+
T Consensus 193 ktVGIvG~G~IG~~v-A~~l~~fG~~V~~~dr~~~~-~~~~~~~g~~~~~~--l~ell-----~~aDvV~l~l---Plt~ 260 (385)
T PRK07574 193 MTVGIVGAGRIGLAV-LRRLKPFDVKLHYTDRHRLP-EEVEQELGLTYHVS--FDSLV-----SVCDVVTIHC---PLHP 260 (385)
T ss_pred CEEEEECCCHHHHHH-HHHHHhCCCEEEEECCCCCc-hhhHhhcCceecCC--HHHHh-----hcCCEEEEcC---CCCH
Confidence 468999999999975 77778899999999964311 11122345433211 11111 2578888754 2333
Q ss_pred HHHHHHHCCCCeeeHHHHHHHHhcCCcEEEEeCCCCchHHHHHHHHHHHHc
Q 009293 156 EILHAKSVGVPIYKRDYWLAKLTEKYNLIAVSGSHGKSTTASMLAYVLKAM 206 (538)
Q Consensus 156 ~l~~a~~~gi~vi~~~~~l~~~~~~~~vI~VTGTnGKTTTt~ml~~iL~~~ 206 (538)
+.... +. .+.+... + .-.+-|--+.|+---..-|...|+..
T Consensus 261 ~T~~l-------i~-~~~l~~m-k-~ga~lIN~aRG~iVDe~AL~~AL~sG 301 (385)
T PRK07574 261 ETEHL-------FD-ADVLSRM-K-RGSYLVNTARGKIVDRDAVVRALESG 301 (385)
T ss_pred HHHHH-------hC-HHHHhcC-C-CCcEEEECCCCchhhHHHHHHHHHhC
Confidence 33322 11 1344433 2 23677777788888888888888753
No 464
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=52.84 E-value=1.5e+02 Score=30.89 Aligned_cols=30 Identities=23% Similarity=0.262 Sum_probs=25.0
Q ss_pred eEEEEeechhhHHHHHHHHHhCC--------CcEEEecC
Q 009293 77 WIHFVGIGGSGLSALAKLALKQG--------FEVSGSDL 107 (538)
Q Consensus 77 ~v~vlG~G~sG~~~la~~l~~~G--------~~v~g~D~ 107 (538)
+|.|||.|.=|-+ +|..|+..| ++|..+..
T Consensus 1 kI~VIGaG~wGtA-LA~~la~ng~~~~~~~~~~V~lw~~ 38 (342)
T TIGR03376 1 RVAVVGSGNWGTA-IAKIVAENARALPELFEESVRMWVF 38 (342)
T ss_pred CEEEECcCHHHHH-HHHHHHHcCCcccccCCceEEEEEe
Confidence 4789999887764 789999889 99999875
No 465
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=52.82 E-value=1.7e+02 Score=26.04 Aligned_cols=94 Identities=21% Similarity=0.213 Sum_probs=51.6
Q ss_pred hhHHHHHHHHHhCCCcEE--EecCCCChhHHHHHHCCCeEEeCCCCCCcCCCCCCCCCCEEEEcCCCCCCCHHHHHHHHC
Q 009293 86 SGLSALAKLALKQGFEVS--GSDLVWSSYMEGLLEAGANLHIGHSVSNIQGNDGSRFPNAVVASSAIPQDNVEILHAKSV 163 (538)
Q Consensus 86 sG~~~la~~l~~~G~~v~--g~D~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~d~vvvsp~i~~~~~~l~~a~~~ 163 (538)
.|.-.++.+|+..|++|. |.|...+++++.+.+. .+|+|.+|.-.....+.+...
T Consensus 18 lG~~iv~~~lr~~G~eVi~LG~~vp~e~i~~~a~~~--------------------~~d~V~lS~~~~~~~~~~~~~--- 74 (137)
T PRK02261 18 VGNKILDRALTEAGFEVINLGVMTSQEEFIDAAIET--------------------DADAILVSSLYGHGEIDCRGL--- 74 (137)
T ss_pred HHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHc--------------------CCCEEEEcCccccCHHHHHHH---
Confidence 455567889999999997 5554444555555443 356677765443333333322
Q ss_pred CCCeeeHHHHHHHHhcCCcEEEEeCCC--CchHHHHHHHHHHHHcCCCe
Q 009293 164 GVPIYKRDYWLAKLTEKYNLIAVSGSH--GKSTTASMLAYVLKAMGDDL 210 (538)
Q Consensus 164 gi~vi~~~~~l~~~~~~~~vI~VTGTn--GKTTTt~ml~~iL~~~G~~v 210 (538)
.+.+......-..|.|-|+- +++ +-.-...-|++.|...
T Consensus 75 -------~~~L~~~~~~~~~i~vGG~~~~~~~-~~~~~~~~l~~~G~~~ 115 (137)
T PRK02261 75 -------REKCIEAGLGDILLYVGGNLVVGKH-DFEEVEKKFKEMGFDR 115 (137)
T ss_pred -------HHHHHhcCCCCCeEEEECCCCCCcc-ChHHHHHHHHHcCCCE
Confidence 12232221112467777743 443 3444555677888763
No 466
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=52.77 E-value=24 Score=32.33 Aligned_cols=30 Identities=40% Similarity=0.516 Sum_probs=24.2
Q ss_pred EEEEeC--CCCchHHHHHHHHHHHHcCCCeEE
Q 009293 183 LIAVSG--SHGKSTTASMLAYVLKAMGDDLTA 212 (538)
Q Consensus 183 vI~VTG--TnGKTTTt~ml~~iL~~~G~~v~~ 212 (538)
++.++| -.||||++..++..|.+.|.++..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~ 33 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLL 33 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEE
Confidence 566776 468999999999999988887643
No 467
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=52.66 E-value=13 Score=38.84 Aligned_cols=30 Identities=30% Similarity=0.244 Sum_probs=26.4
Q ss_pred eEEEEeechhhHHHHHHHHHhCCCcEEEecC
Q 009293 77 WIHFVGIGGSGLSALAKLALKQGFEVSGSDL 107 (538)
Q Consensus 77 ~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~ 107 (538)
.|.|||.|.+|.++ |..|+..|.+|...|.
T Consensus 7 dViIvGgG~aGl~~-A~~La~~G~~V~liE~ 36 (391)
T PRK08020 7 DIAIVGGGMVGAAL-ALGLAQHGFSVAVLEH 36 (391)
T ss_pred cEEEECcCHHHHHH-HHHHhcCCCEEEEEcC
Confidence 58899999999986 7888889999999984
No 468
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=52.45 E-value=25 Score=33.86 Aligned_cols=32 Identities=28% Similarity=0.365 Sum_probs=27.3
Q ss_pred CcEEEEeC--CCCchHHHHHHHHHHHHcCCCeEE
Q 009293 181 YNLIAVSG--SHGKSTTASMLAYVLKAMGDDLTA 212 (538)
Q Consensus 181 ~~vI~VTG--TnGKTTTt~ml~~iL~~~G~~v~~ 212 (538)
...|.|-| -.||||.+.+++..|++.|++|..
T Consensus 3 g~fI~iEGiDGaGKTT~~~~L~~~l~~~g~~v~~ 36 (208)
T COG0125 3 GMFIVIEGIDGAGKTTQAELLKERLEERGIKVVL 36 (208)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 45788888 468999999999999999987654
No 469
>PLN02924 thymidylate kinase
Probab=52.36 E-value=21 Score=34.59 Aligned_cols=32 Identities=34% Similarity=0.466 Sum_probs=28.0
Q ss_pred cCCcEEEEeC--CCCchHHHHHHHHHHHHcCCCe
Q 009293 179 EKYNLIAVSG--SHGKSTTASMLAYVLKAMGDDL 210 (538)
Q Consensus 179 ~~~~vI~VTG--TnGKTTTt~ml~~iL~~~G~~v 210 (538)
...+.|.|.| -.||||-+.+|+..|+..|+++
T Consensus 14 ~~g~~IviEGiDGsGKsTq~~~L~~~l~~~g~~v 47 (220)
T PLN02924 14 SRGALIVLEGLDRSGKSTQCAKLVSFLKGLGVAA 47 (220)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCc
Confidence 3457999999 5789999999999999999875
No 470
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=52.26 E-value=16 Score=40.50 Aligned_cols=31 Identities=19% Similarity=0.226 Sum_probs=24.6
Q ss_pred ceEEEEeechhhHHHHHHHHHh----CCCcEEEecC
Q 009293 76 GWIHFVGIGGSGLSALAKLALK----QGFEVSGSDL 107 (538)
Q Consensus 76 ~~v~vlG~G~sG~~~la~~l~~----~G~~v~g~D~ 107 (538)
++++|||.|.+|+|| |.+|.. +|++|+..+.
T Consensus 23 ~~a~IIGaGiAGLAA-A~~L~~dg~~~G~~VtIlEk 57 (576)
T PRK13977 23 KKAYIIGSGLASLAA-AVFLIRDGQMPGENITILEE 57 (576)
T ss_pred CeEEEECCCHHHHHH-HHHHHHccCCCCCcEEEEeC
Confidence 679999999999998 556655 4788887764
No 471
>PRK06185 hypothetical protein; Provisional
Probab=51.94 E-value=14 Score=38.89 Aligned_cols=31 Identities=23% Similarity=0.236 Sum_probs=26.9
Q ss_pred eEEEEeechhhHHHHHHHHHhCCCcEEEecCC
Q 009293 77 WIHFVGIGGSGLSALAKLALKQGFEVSGSDLV 108 (538)
Q Consensus 77 ~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~ 108 (538)
.|+|||.|.+|.++ |..|+..|.+|...|..
T Consensus 8 dV~IvGgG~~Gl~~-A~~La~~G~~v~liE~~ 38 (407)
T PRK06185 8 DCCIVGGGPAGMML-GLLLARAGVDVTVLEKH 38 (407)
T ss_pred cEEEECCCHHHHHH-HHHHHhCCCcEEEEecC
Confidence 48899999999986 78888999999999843
No 472
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=51.91 E-value=72 Score=36.72 Aligned_cols=34 Identities=24% Similarity=0.186 Sum_probs=27.2
Q ss_pred CceEEEEeechhhHHHHHHHHH-hCCCcEEEecCCC
Q 009293 75 KGWIHFVGIGGSGLSALAKLAL-KQGFEVSGSDLVW 109 (538)
Q Consensus 75 ~~~v~vlG~G~sG~~~la~~l~-~~G~~v~g~D~~~ 109 (538)
-++|.|||.|..|.+ +|..++ ..|+.|...|...
T Consensus 309 i~~v~ViGaG~mG~g-iA~~~a~~~G~~V~l~d~~~ 343 (708)
T PRK11154 309 VNKVGVLGGGLMGGG-IAYVTATKAGLPVRIKDINP 343 (708)
T ss_pred ccEEEEECCchhhHH-HHHHHHHHcCCeEEEEeCCH
Confidence 357999999988876 456666 7899999999753
No 473
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=51.90 E-value=67 Score=33.38 Aligned_cols=40 Identities=18% Similarity=0.217 Sum_probs=25.4
Q ss_pred eEEEEeechhhHHHHHHHHHhCCCcEEEecCCCChhHHHH
Q 009293 77 WIHFVGIGGSGLSALAKLALKQGFEVSGSDLVWSSYMEGL 116 (538)
Q Consensus 77 ~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~~~~~~~ 116 (538)
+|.|+|.|..|+..+..+....+.++.+.-....++...+
T Consensus 3 kVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~~~~~~l 42 (341)
T PRK04207 3 KVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKPDYEARV 42 (341)
T ss_pred EEEEECCCHHHHHHHHHHhcCCCcEEEEEECCChHHHHHH
Confidence 6899999999997654444456777775422223444443
No 474
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=51.80 E-value=14 Score=40.29 Aligned_cols=30 Identities=33% Similarity=0.365 Sum_probs=26.1
Q ss_pred eEEEEeechhhHHHHHHHHHhCCCcEEEecC
Q 009293 77 WIHFVGIGGSGLSALAKLALKQGFEVSGSDL 107 (538)
Q Consensus 77 ~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~ 107 (538)
+|.|||.|.+|.++ |..|++.|++|...+.
T Consensus 1 ~v~IiG~G~aGl~a-A~~L~~~G~~v~v~E~ 30 (474)
T TIGR02732 1 KVAIVGAGLAGLST-AVELVDAGHEVDIYES 30 (474)
T ss_pred CEEEECCCHHHHHH-HHHHHHCCCcEEEEEe
Confidence 36899999999987 7888899999999873
No 475
>PRK00698 tmk thymidylate kinase; Validated
Probab=51.62 E-value=25 Score=32.95 Aligned_cols=30 Identities=33% Similarity=0.513 Sum_probs=25.3
Q ss_pred CcEEEEeC--CCCchHHHHHHHHHHHHcCCCe
Q 009293 181 YNLIAVSG--SHGKSTTASMLAYVLKAMGDDL 210 (538)
Q Consensus 181 ~~vI~VTG--TnGKTTTt~ml~~iL~~~G~~v 210 (538)
..+|.|.| -.||||.+..|+.-|...|+.+
T Consensus 3 ~~~I~ieG~~gsGKsT~~~~L~~~l~~~~~~~ 34 (205)
T PRK00698 3 GMFITIEGIDGAGKSTQIELLKELLEQQGRDV 34 (205)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCce
Confidence 36899999 5799999999999998887653
No 476
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=51.59 E-value=59 Score=33.63 Aligned_cols=46 Identities=26% Similarity=0.251 Sum_probs=34.9
Q ss_pred ceEEEEeechhhHHHHHHHHHhCCCcEEEecCCCChhHHHHHHCCCeEE
Q 009293 76 GWIHFVGIGGSGLSALAKLALKQGFEVSGSDLVWSSYMEGLLEAGANLH 124 (538)
Q Consensus 76 ~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~~~~~~~~~~Ga~~~ 124 (538)
|.+.|+|+|..|.-. |..+..-|-+|.++|...+ .+.+...|+...
T Consensus 147 KTLgvlG~GrIGseV-A~r~k~~gm~vI~~dpi~~--~~~~~a~gvq~v 192 (406)
T KOG0068|consen 147 KTLGVLGLGRIGSEV-AVRAKAMGMHVIGYDPITP--MALAEAFGVQLV 192 (406)
T ss_pred cEEEEeecccchHHH-HHHHHhcCceEEeecCCCc--hHHHHhccceee
Confidence 568899999999874 7777888999999994322 345667787763
No 477
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=51.54 E-value=29 Score=34.98 Aligned_cols=39 Identities=31% Similarity=0.469 Sum_probs=24.1
Q ss_pred hhhhhhcCCCceEEEEeechhhHHHHHHHH----HhCCCcEEEec
Q 009293 66 ECIVDFKNRKGWIHFVGIGGSGLSALAKLA----LKQGFEVSGSD 106 (538)
Q Consensus 66 ~~~~~~~~~~~~v~vlG~G~sG~~~la~~l----~~~G~~v~g~D 106 (538)
....++-.+-++|+|+|.|.||.-| .++ ..-|.++...+
T Consensus 121 ~~av~~L~~A~rI~~~G~g~S~~vA--~~~~~~l~~ig~~~~~~~ 163 (281)
T COG1737 121 ERAVELLAKARRIYFFGLGSSGLVA--SDLAYKLMRIGLNVVALS 163 (281)
T ss_pred HHHHHHHHcCCeEEEEEechhHHHH--HHHHHHHHHcCCceeEec
Confidence 3333444555679999999999754 333 34466665544
No 478
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=51.44 E-value=50 Score=36.50 Aligned_cols=106 Identities=22% Similarity=0.197 Sum_probs=62.0
Q ss_pred ceEEEEeechhhHHHHHHHHHhCCCcEEEecCCCChhHHHHHHCCCeEEeCCCCCCcCCCCCCCCCCEEEEcCCCCCCCH
Q 009293 76 GWIHFVGIGGSGLSALAKLALKQGFEVSGSDLVWSSYMEGLLEAGANLHIGHSVSNIQGNDGSRFPNAVVASSAIPQDNV 155 (538)
Q Consensus 76 ~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~d~vvvsp~i~~~~~ 155 (538)
++|.|+|+|..|+.. |+.|+.-|.+|.++|.... .+...+.|+... ...++. +.+|+|++.-. ..+
T Consensus 141 ktvgIiG~G~IG~~v-A~~l~~fG~~V~~~d~~~~--~~~~~~~g~~~~---~l~ell-----~~aDiV~l~lP---~t~ 206 (526)
T PRK13581 141 KTLGIIGLGRIGSEV-AKRAKAFGMKVIAYDPYIS--PERAAQLGVELV---SLDELL-----ARADFITLHTP---LTP 206 (526)
T ss_pred CEEEEECCCHHHHHH-HHHHHhCCCEEEEECCCCC--hhHHHhcCCEEE---cHHHHH-----hhCCEEEEccC---CCh
Confidence 569999999999974 7777889999999995432 123345566543 111111 25788777532 222
Q ss_pred HHHHHHHCCCCeeeHHHHHHHHhcCCcEEEEeCCCCchHHHHHHHHHHHH
Q 009293 156 EILHAKSVGVPIYKRDYWLAKLTEKYNLIAVSGSHGKSTTASMLAYVLKA 205 (538)
Q Consensus 156 ~l~~a~~~gi~vi~~~~~l~~~~~~~~vI~VTGTnGKTTTt~ml~~iL~~ 205 (538)
.-.. ++. .+.+... + ...+-|-=+.|..--..-|...|+.
T Consensus 207 ~t~~-------li~-~~~l~~m-k-~ga~lIN~aRG~~vde~aL~~aL~~ 246 (526)
T PRK13581 207 ETRG-------LIG-AEELAKM-K-PGVRIINCARGGIIDEAALAEALKS 246 (526)
T ss_pred Hhhc-------CcC-HHHHhcC-C-CCeEEEECCCCceeCHHHHHHHHhc
Confidence 2111 121 1334333 2 2355566667777777777777764
No 479
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=51.43 E-value=20 Score=32.28 Aligned_cols=28 Identities=36% Similarity=0.526 Sum_probs=22.7
Q ss_pred EEEeCC--CCchHHHHHHHHHHHHcCCCeE
Q 009293 184 IAVSGS--HGKSTTASMLAYVLKAMGDDLT 211 (538)
Q Consensus 184 I~VTGT--nGKTTTt~ml~~iL~~~G~~v~ 211 (538)
|++.|. .||||++..+...|...|.++.
T Consensus 2 i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ 31 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITALRARGKRVA 31 (148)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEE
Confidence 566654 5799999999999999988754
No 480
>KOG3308 consensus Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism]
Probab=51.43 E-value=11 Score=35.87 Aligned_cols=25 Identities=28% Similarity=0.429 Sum_probs=20.9
Q ss_pred cEEEEeC--CCCchHHHHHHHHHHHHc
Q 009293 182 NLIAVSG--SHGKSTTASMLAYVLKAM 206 (538)
Q Consensus 182 ~vI~VTG--TnGKTTTt~ml~~iL~~~ 206 (538)
-+|||+| ..||||.+..+..+|..+
T Consensus 5 ~ivgiSG~TnsGKTTLak~l~~~f~~~ 31 (225)
T KOG3308|consen 5 LIVGISGCTNSGKTTLAKSLHRFFPGC 31 (225)
T ss_pred EEEEeecccCCCHhHHHHHHHHHccCC
Confidence 4899999 569999999999988543
No 481
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=51.42 E-value=26 Score=36.23 Aligned_cols=35 Identities=29% Similarity=0.346 Sum_probs=29.8
Q ss_pred CCcEEEE----eCCCCchHHHHHHHHHHHHcCCCeEEEe
Q 009293 180 KYNLIAV----SGSHGKSTTASMLAYVLKAMGDDLTAIV 214 (538)
Q Consensus 180 ~~~vI~V----TGTnGKTTTt~ml~~iL~~~G~~v~~~~ 214 (538)
+.|+|.| +|-.|||-++..|...|++.|++++.+.
T Consensus 34 ~vpVIsVGNltvGGTGKTP~v~~L~~~L~~~G~~~~IlS 72 (326)
T PF02606_consen 34 PVPVISVGNLTVGGTGKTPLVIWLARLLQARGYRPAILS 72 (326)
T ss_pred CCcEEEEcccccCCCCchHHHHHHHHHHHhcCCceEEEc
Confidence 5678877 4899999999999999999999976543
No 482
>PRK08818 prephenate dehydrogenase; Provisional
Probab=51.30 E-value=17 Score=38.25 Aligned_cols=32 Identities=31% Similarity=0.405 Sum_probs=27.0
Q ss_pred CceEEEEee-chhhHHHHHHHHHhC-CCcEEEecC
Q 009293 75 KGWIHFVGI-GGSGLSALAKLALKQ-GFEVSGSDL 107 (538)
Q Consensus 75 ~~~v~vlG~-G~sG~~~la~~l~~~-G~~v~g~D~ 107 (538)
+.+|.|||+ |..|.+ +|+.|... |++|.|+|.
T Consensus 4 ~~~I~IIGl~GliGgs-lA~alk~~~~~~V~g~D~ 37 (370)
T PRK08818 4 QPVVGIVGSAGAYGRW-LARFLRTRMQLEVIGHDP 37 (370)
T ss_pred CCEEEEECCCCHHHHH-HHHHHHhcCCCEEEEEcC
Confidence 467999999 999998 58888754 999999994
No 483
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=51.26 E-value=24 Score=36.30 Aligned_cols=34 Identities=29% Similarity=0.378 Sum_probs=29.6
Q ss_pred CcEEEE----eCCCCchHHHHHHHHHHHHcCCCeEEEe
Q 009293 181 YNLIAV----SGSHGKSTTASMLAYVLKAMGDDLTAIV 214 (538)
Q Consensus 181 ~~vI~V----TGTnGKTTTt~ml~~iL~~~G~~v~~~~ 214 (538)
.|+|.| .|-||||-++-.|+.-|++.|++++.+.
T Consensus 47 vPVI~VGNltvGGtGKTP~vi~la~~l~~rG~~~gvvS 84 (336)
T COG1663 47 VPVICVGNLTVGGTGKTPVVIWLAEALQARGVRVGVVS 84 (336)
T ss_pred CCEEEEccEEECCCCcCHHHHHHHHHHHhcCCeeEEEe
Confidence 678876 4999999999999999999999987654
No 484
>COG4240 Predicted kinase [General function prediction only]
Probab=51.01 E-value=27 Score=34.14 Aligned_cols=31 Identities=29% Similarity=0.522 Sum_probs=26.2
Q ss_pred CCcEEEEeCC--CCchHHHHHHHHHHHHcC-CCe
Q 009293 180 KYNLIAVSGS--HGKSTTASMLAYVLKAMG-DDL 210 (538)
Q Consensus 180 ~~~vI~VTGT--nGKTTTt~ml~~iL~~~G-~~v 210 (538)
+.-++||.|. .||||++..|..+|.+.| +++
T Consensus 49 rPli~gisGpQGSGKStls~~i~~~L~~kg~ert 82 (300)
T COG4240 49 RPLIVGISGPQGSGKSTLSALIVRLLAAKGLERT 82 (300)
T ss_pred CceEEEeecCCCCchhhHHHHHHHHHHHhcccce
Confidence 4458999996 579999999999999988 454
No 485
>PRK10015 oxidoreductase; Provisional
Probab=50.95 E-value=16 Score=39.10 Aligned_cols=31 Identities=26% Similarity=0.204 Sum_probs=27.2
Q ss_pred eEEEEeechhhHHHHHHHHHhCCCcEEEecCC
Q 009293 77 WIHFVGIGGSGLSALAKLALKQGFEVSGSDLV 108 (538)
Q Consensus 77 ~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~ 108 (538)
.|.|||.|.+|.+| |..|+++|.+|...|..
T Consensus 7 DViIVGgGpAG~~a-A~~LA~~G~~VlliEr~ 37 (429)
T PRK10015 7 DAIVVGAGVAGSVA-ALVMARAGLDVLVIERG 37 (429)
T ss_pred CEEEECcCHHHHHH-HHHHHhCCCeEEEEecC
Confidence 47899999999987 78889999999999854
No 486
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=50.62 E-value=25 Score=35.41 Aligned_cols=32 Identities=31% Similarity=0.376 Sum_probs=24.3
Q ss_pred CCcEEEEeCC--CCchHHHHHHHHHHHHc-C-CCeE
Q 009293 180 KYNLIAVSGS--HGKSTTASMLAYVLKAM-G-DDLT 211 (538)
Q Consensus 180 ~~~vI~VTGT--nGKTTTt~ml~~iL~~~-G-~~v~ 211 (538)
...+|++.|. .|||||+..|+.-+... | ++|+
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~ 228 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVA 228 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEE
Confidence 3458888885 47999999999988765 4 6654
No 487
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=50.53 E-value=37 Score=33.86 Aligned_cols=64 Identities=20% Similarity=0.153 Sum_probs=33.6
Q ss_pred eEEEEeechhhHHHHHHHHHhC-CCc-EEEecCCCChhHHHHH-HCCCeEEeCCCCCCcCCCCCCCCCCEEEEcC
Q 009293 77 WIHFVGIGGSGLSALAKLALKQ-GFE-VSGSDLVWSSYMEGLL-EAGANLHIGHSVSNIQGNDGSRFPNAVVASS 148 (538)
Q Consensus 77 ~v~vlG~G~sG~~~la~~l~~~-G~~-v~g~D~~~~~~~~~~~-~~Ga~~~~~~~~~~~~~~~~~~~~d~vvvsp 148 (538)
+|.|||.|..|...+..++... +.+ +.+.|.+.. -...+. +.|...+- +.+.+. ..+|+|+...
T Consensus 3 rIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~-~a~~~a~~~~~~~~~--~~~ell-----~~~DvVvi~a 69 (265)
T PRK13304 3 KIGIVGCGAIASLITKAILSGRINAELYAFYDRNLE-KAENLASKTGAKACL--SIDELV-----EDVDLVVECA 69 (265)
T ss_pred EEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHH-HHHHHHHhcCCeeEC--CHHHHh-----cCCCEEEEcC
Confidence 5899999999997544444322 444 335664322 223332 33544321 111121 2589988853
No 488
>PRK08244 hypothetical protein; Provisional
Probab=50.53 E-value=15 Score=40.06 Aligned_cols=31 Identities=19% Similarity=0.163 Sum_probs=27.4
Q ss_pred eEEEEeechhhHHHHHHHHHhCCCcEEEecCC
Q 009293 77 WIHFVGIGGSGLSALAKLALKQGFEVSGSDLV 108 (538)
Q Consensus 77 ~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~ 108 (538)
.|+|||.|.+|+++ |..|+..|.+|...|..
T Consensus 4 dVlIVGaGpaGl~l-A~~L~~~G~~v~viEr~ 34 (493)
T PRK08244 4 EVIIIGGGPVGLML-ASELALAGVKTCVIERL 34 (493)
T ss_pred CEEEECCCHHHHHH-HHHHHHCCCcEEEEecC
Confidence 48899999999975 88889999999999964
No 489
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=50.51 E-value=1.2e+02 Score=35.86 Aligned_cols=135 Identities=18% Similarity=0.138 Sum_probs=68.8
Q ss_pred ceEEEEeechhhHHHHHHHHHh---CCCcEEEecCCCC---------hh-------------HHHHHHCCCeEEeCCCCC
Q 009293 76 GWIHFVGIGGSGLSALAKLALK---QGFEVSGSDLVWS---------SY-------------MEGLLEAGANLHIGHSVS 130 (538)
Q Consensus 76 ~~v~vlG~G~sG~~~la~~l~~---~G~~v~g~D~~~~---------~~-------------~~~~~~~Ga~~~~~~~~~ 130 (538)
++|+|||.|-.|+.++..+... .+++|+..+..+. .+ ...+.+.|+.+..+....
T Consensus 4 ~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~r~~L~~~~~~~~~~~l~~~~~~~~~~~gI~~~~g~~V~ 83 (847)
T PRK14989 4 VRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDRVHLSSYFSHHTAEELSLVREGFYEKHGIKVLVGERAI 83 (847)
T ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcccCCcchHhHcCCCHHHccCCCHHHHHhCCCEEEcCCEEE
Confidence 4688999999999987666543 4678888763311 11 122345688776653211
Q ss_pred C-------cCCCCC-CCCCCEEEEcCCCCCCCHHHHHHHHCCCCeeeHHHHHHH---HhcCCcEEEEeCCCCchHHHHHH
Q 009293 131 N-------IQGNDG-SRFPNAVVASSAIPQDNVEILHAKSVGVPIYKRDYWLAK---LTEKYNLIAVSGSHGKSTTASML 199 (538)
Q Consensus 131 ~-------~~~~~~-~~~~d~vvvsp~i~~~~~~l~~a~~~gi~vi~~~~~l~~---~~~~~~vI~VTGTnGKTTTt~ml 199 (538)
. +...++ .-.+|.+|+..|..+..|.+.-....++.++...+-+.. .....+.+.|-|. +-+.-=+
T Consensus 84 ~Id~~~~~V~~~~G~~i~yD~LVIATGs~p~~p~ipG~~~~~v~~~rt~~d~~~l~~~~~~~k~vvVIGg---G~iGlE~ 160 (847)
T PRK14989 84 TINRQEKVIHSSAGRTVFYDKLIMATGSYPWIPPIKGSETQDCFVYRTIEDLNAIEACARRSKRGAVVGG---GLLGLEA 160 (847)
T ss_pred EEeCCCcEEEECCCcEEECCEEEECCCCCcCCCCCCCCCCCCeEEECCHHHHHHHHHHHhcCCeEEEECC---CHHHHHH
Confidence 0 000000 114799999888655433221111122223322221111 1122334444443 3455556
Q ss_pred HHHHHHcCCCeEEE
Q 009293 200 AYVLKAMGDDLTAI 213 (538)
Q Consensus 200 ~~iL~~~G~~v~~~ 213 (538)
+..|+..|.++..+
T Consensus 161 A~~L~~~G~~VtvV 174 (847)
T PRK14989 161 AGALKNLGVETHVI 174 (847)
T ss_pred HHHHHHcCCeEEEE
Confidence 77788888876544
No 490
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=50.29 E-value=16 Score=39.26 Aligned_cols=31 Identities=26% Similarity=0.228 Sum_probs=27.3
Q ss_pred eEEEEeechhhHHHHHHHHHhCCCcEEEecCC
Q 009293 77 WIHFVGIGGSGLSALAKLALKQGFEVSGSDLV 108 (538)
Q Consensus 77 ~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~ 108 (538)
+|.|+|.|..|..+ |..|+..|.+|...+.+
T Consensus 2 ~VvVIGgGlAGlea-A~~LAr~G~~V~LiE~r 32 (433)
T TIGR00137 2 PVHVIGGGLAGSEA-AWQLAQAGVPVILYEMR 32 (433)
T ss_pred CEEEECCCHHHHHH-HHHHHhCCCcEEEEecc
Confidence 47899999999986 88889999999999854
No 491
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=50.21 E-value=1.5e+02 Score=25.29 Aligned_cols=14 Identities=43% Similarity=0.593 Sum_probs=11.2
Q ss_pred eEEEEeechhhHHH
Q 009293 77 WIHFVGIGGSGLSA 90 (538)
Q Consensus 77 ~v~vlG~G~sG~~~ 90 (538)
+|+|+|.|.|+..|
T Consensus 1 ~I~i~G~G~S~~~A 14 (120)
T cd05710 1 NVFFVGCGGSLADM 14 (120)
T ss_pred CEEEEEecHHHHHH
Confidence 37899999988754
No 492
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=50.16 E-value=75 Score=33.16 Aligned_cols=78 Identities=22% Similarity=0.207 Sum_probs=48.8
Q ss_pred ceEEEEeechhhHHHHHHHHHhCCCcEEEecCCC-------Ch-----hHHHHHHCCCeEEeCCCCCCc---------CC
Q 009293 76 GWIHFVGIGGSGLSALAKLALKQGFEVSGSDLVW-------SS-----YMEGLLEAGANLHIGHSVSNI---------QG 134 (538)
Q Consensus 76 ~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~-------~~-----~~~~~~~~Ga~~~~~~~~~~~---------~~ 134 (538)
++|.|+|.|.+|+-+ |..|+..|.+|...+... ++ ..+.+.+.|+.+..+.....+ ..
T Consensus 142 ~~vvViGgG~~g~e~-A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~ 220 (377)
T PRK04965 142 QRVLVVGGGLIGTEL-AMDLCRAGKAVTLVDNAASLLASLMPPEVSSRLQHRLTEMGVHLLLKSQLQGLEKTDSGIRATL 220 (377)
T ss_pred CeEEEECCCHHHHHH-HHHHHhcCCeEEEEecCCcccchhCCHHHHHHHHHHHHhCCCEEEECCeEEEEEccCCEEEEEE
Confidence 568899999999985 677788999999887432 11 123456778887654221110 00
Q ss_pred CCC-CCCCCEEEEcCCCCCCC
Q 009293 135 NDG-SRFPNAVVASSAIPQDN 154 (538)
Q Consensus 135 ~~~-~~~~d~vvvsp~i~~~~ 154 (538)
.++ .-.+|++|+++|..+..
T Consensus 221 ~~g~~i~~D~vI~a~G~~p~~ 241 (377)
T PRK04965 221 DSGRSIEVDAVIAAAGLRPNT 241 (377)
T ss_pred cCCcEEECCEEEECcCCCcch
Confidence 000 11368899998876643
No 493
>PRK05380 pyrG CTP synthetase; Validated
Probab=50.14 E-value=42 Score=36.93 Aligned_cols=32 Identities=44% Similarity=0.476 Sum_probs=28.4
Q ss_pred CcEEEEeC----CCCchHHHHHHHHHHHHcCCCeEE
Q 009293 181 YNLIAVSG----SHGKSTTASMLAYVLKAMGDDLTA 212 (538)
Q Consensus 181 ~~vI~VTG----TnGKTTTt~ml~~iL~~~G~~v~~ 212 (538)
.+.|-||| +=||+.|++-|..+|+..|++|..
T Consensus 2 ~k~ifvtGgv~S~lGKGi~~as~g~ll~~~g~~v~~ 37 (533)
T PRK05380 2 TKYIFVTGGVVSSLGKGITAASLGRLLKARGLKVTI 37 (533)
T ss_pred ceEEEEcCCcccCcchHHHHHHHHHHHHhCCCceEE
Confidence 46788998 679999999999999999999764
No 494
>COG0394 Wzb Protein-tyrosine-phosphatase [Signal transduction mechanisms]
Probab=50.10 E-value=11 Score=33.84 Aligned_cols=22 Identities=27% Similarity=0.247 Sum_probs=20.1
Q ss_pred ceEEEEeechhhHHHHHHHHHh
Q 009293 76 GWIHFVGIGGSGLSALAKLALK 97 (538)
Q Consensus 76 ~~v~vlG~G~sG~~~la~~l~~ 97 (538)
.+|+|||.|.+.||.+|+.+.+
T Consensus 3 ~kVLFVC~gN~cRSpmAE~l~~ 24 (139)
T COG0394 3 MKVLFVCTGNICRSPMAEALLR 24 (139)
T ss_pred ceEEEEcCCCcccCHHHHHHHH
Confidence 5799999999999999999876
No 495
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=50.00 E-value=25 Score=37.93 Aligned_cols=33 Identities=33% Similarity=0.387 Sum_probs=26.7
Q ss_pred CcEEEEeC--CCCchHHHHHHHHHHHHcCCCeEEE
Q 009293 181 YNLIAVSG--SHGKSTTASMLAYVLKAMGDDLTAI 213 (538)
Q Consensus 181 ~~vI~VTG--TnGKTTTt~ml~~iL~~~G~~v~~~ 213 (538)
..+|.++| -.|||||+.-++..|+..|++|...
T Consensus 95 p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV 129 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLV 129 (437)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEe
Confidence 45777777 4589999999999999999886543
No 496
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=49.69 E-value=16 Score=39.88 Aligned_cols=30 Identities=23% Similarity=0.189 Sum_probs=26.0
Q ss_pred EEEEeechhhHHHHHHHHHhCCCcEEEecCC
Q 009293 78 IHFVGIGGSGLSALAKLALKQGFEVSGSDLV 108 (538)
Q Consensus 78 v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~ 108 (538)
|.|||.|..|+++ |.+|+.+|++|.+.+..
T Consensus 3 vvViGaG~~Gl~a-A~~La~~G~~V~vlE~~ 32 (493)
T TIGR02730 3 AIVIGSGIGGLVT-ATQLAVKGAKVLVLERY 32 (493)
T ss_pred EEEECCcHHHHHH-HHHHHHCCCcEEEEECC
Confidence 6799999999987 78888899999988743
No 497
>PRK15482 transcriptional regulator MurR; Provisional
Probab=49.66 E-value=96 Score=31.04 Aligned_cols=38 Identities=26% Similarity=0.513 Sum_probs=23.2
Q ss_pred hhhhhhcCCCceEEEEeechhhHHHHHHHHH----hCCCcEEEe
Q 009293 66 ECIVDFKNRKGWIHFVGIGGSGLSALAKLAL----KQGFEVSGS 105 (538)
Q Consensus 66 ~~~~~~~~~~~~v~vlG~G~sG~~~la~~l~----~~G~~v~g~ 105 (538)
..+.++-.+.++|+|+|.|.|+..| .++. .-|..+...
T Consensus 126 ~~~~~~i~~A~~I~i~G~G~S~~~A--~~l~~~l~~~g~~~~~~ 167 (285)
T PRK15482 126 QKIIEVISKAPFIQITGLGGSALVG--RDLSFKLMKIGYRVACE 167 (285)
T ss_pred HHHHHHHHhCCeeEEEEeChhHHHH--HHHHHHHHhCCCeeEEe
Confidence 3333444556779999999998743 4443 346555543
No 498
>PLN02568 polyamine oxidase
Probab=49.61 E-value=18 Score=40.20 Aligned_cols=31 Identities=29% Similarity=0.387 Sum_probs=25.1
Q ss_pred ceEEEEeechhhHHHHHHHHHhCC-----CcEEEecC
Q 009293 76 GWIHFVGIGGSGLSALAKLALKQG-----FEVSGSDL 107 (538)
Q Consensus 76 ~~v~vlG~G~sG~~~la~~l~~~G-----~~v~g~D~ 107 (538)
.+|.|||.|.+|++| |..|+..| .+|...+.
T Consensus 6 ~~v~iiGaG~aGl~a-a~~L~~~g~~~~~~~v~v~E~ 41 (539)
T PLN02568 6 PRIVIIGAGMAGLTA-ANKLYTSSAANDMFELTVVEG 41 (539)
T ss_pred CcEEEECCCHHHHHH-HHHHHhcccccCCceEEEEeC
Confidence 568999999999997 67777666 78887763
No 499
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=49.47 E-value=11 Score=34.31 Aligned_cols=19 Identities=42% Similarity=0.538 Sum_probs=15.3
Q ss_pred EEEeC--CCCchHHHHHHHHH
Q 009293 184 IAVSG--SHGKSTTASMLAYV 202 (538)
Q Consensus 184 I~VTG--TnGKTTTt~ml~~i 202 (538)
|+||| +.||||++.-|++.
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 78999 57899999888866
No 500
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=49.30 E-value=17 Score=33.92 Aligned_cols=29 Identities=28% Similarity=0.412 Sum_probs=19.3
Q ss_pred EEEeechhhHHHHHHHHHhCCCc-EEEecCC
Q 009293 79 HFVGIGGSGLSALAKLALKQGFE-VSGSDLV 108 (538)
Q Consensus 79 ~vlG~G~sG~~~la~~l~~~G~~-v~g~D~~ 108 (538)
.|||.|.+|++++ ..|...|.+ +...|..
T Consensus 1 ~IIGaG~aGl~~a-~~l~~~g~~~v~v~e~~ 30 (203)
T PF13738_consen 1 VIIGAGPAGLAAA-AHLLERGIDPVVVLERN 30 (203)
T ss_dssp EEE--SHHHHHHH-HHHHHTT---EEEEESS
T ss_pred CEECcCHHHHHHH-HHHHhCCCCcEEEEeCC
Confidence 4899999999985 555667998 8888843
Done!