Your job contains 1 sequence.
>009294
MARLLLKAPYLHIRVLMASRCFCSFSSSLFFKPRTNFAIRGVSSQVLTRSNVVLPRAFLS
SSIATEAFKENPVSKTYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVD
EAQAGYASNIEVALLADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSS
GYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQ
GTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFA
GGLEEYVQWLNTDKKPLHDVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGG
THIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTR
LGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLR
SSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQVIINPLQESIFAFASA
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 009294
(538 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2146698 - symbol:GYRB2 "DNA GYRASE B2" species... 1814 4.4e-187 1
UNIPROTKB|Q5NBJ3 - symbol:GYRB "DNA gyrase subunit B, chl... 1651 8.2e-170 1
UNIPROTKB|Q7NHM9 - symbol:gyrB "DNA gyrase subunit B" spe... 1225 1.1e-124 1
UNIPROTKB|A8IIG8 - symbol:TOP3 "DNA gyrase subunit B-like... 1131 1.0e-114 1
TIGR_CMR|CHY_2705 - symbol:CHY_2705 "DNA gyrase, B subuni... 1063 1.7e-107 1
UNIPROTKB|P77993 - symbol:gyrB "DNA gyrase subunit B" spe... 1006 1.8e-101 1
UNIPROTKB|Q8TQG0 - symbol:gyrB "DNA gyrase subunit B" spe... 992 5.6e-100 1
UNIPROTKB|P05652 - symbol:gyrB "DNA gyrase subunit B" spe... 991 7.1e-100 1
TIGR_CMR|BA_0005 - symbol:BA_0005 "DNA gyrase, B subunit"... 979 1.3e-98 1
TIGR_CMR|DET_0004 - symbol:DET_0004 "DNA gyrase, B subuni... 968 2.0e-97 1
UNIPROTKB|Q74H89 - symbol:gyrB "DNA gyrase subunit B" spe... 958 2.2e-96 1
TIGR_CMR|GSU_0003 - symbol:GSU_0003 "DNA gyrase, B subuni... 958 2.2e-96 1
UNIPROTKB|Q8A277 - symbol:gyrB "DNA gyrase subunit B" spe... 951 1.2e-95 1
UNIPROTKB|O67137 - symbol:gyrB "DNA gyrase subunit B" spe... 943 8.7e-95 1
UNIPROTKB|Q8FA30 - symbol:gyrB "DNA gyrase subunit B" spe... 929 2.7e-93 1
UNIPROTKB|P0C5C5 - symbol:gyrB "DNA gyrase subunit B" spe... 506 1.3e-92 2
UNIPROTKB|O08399 - symbol:gyrB "DNA gyrase subunit B" spe... 922 1.5e-92 1
TIGR_CMR|CJE_0003 - symbol:CJE_0003 "DNA gyrase, B subuni... 919 3.0e-92 1
UNIPROTKB|Q3KMH2 - symbol:gyrB_1 "DNA gyrase subunit B" s... 906 7.3e-91 1
UNIPROTKB|P0AES6 - symbol:gyrB species:83333 "Escherichia... 880 4.1e-88 1
UNIPROTKB|Q9KVX3 - symbol:gyrB "DNA gyrase subunit B" spe... 876 1.1e-87 1
TIGR_CMR|VC_0015 - symbol:VC_0015 "DNA gyrase, subunit B"... 876 1.1e-87 1
TIGR_CMR|SPO_0155 - symbol:SPO_0155 "DNA gyrase, B subuni... 873 2.3e-87 1
TIGR_CMR|BA_3657 - symbol:BA_3657 "DNA topoisomerase IV, ... 868 7.7e-87 1
UNIPROTKB|Q89W70 - symbol:gyrB "DNA gyrase subunit B" spe... 867 9.9e-87 1
TIGR_CMR|CBU_0004 - symbol:CBU_0004 "DNA gyrase, B subuni... 867 9.9e-87 1
UNIPROTKB|Q59192 - symbol:parE "DNA topoisomerase 4 subun... 846 1.7e-84 1
TIGR_CMR|SO_0011 - symbol:SO_0011 "DNA gyrase, B subunit"... 841 5.6e-84 1
UNIPROTKB|A6UX65 - symbol:gyrB "DNA gyrase subunit B" spe... 838 1.2e-83 1
TIGR_CMR|NSE_0721 - symbol:NSE_0721 "DNA gyrase, B subuni... 832 5.0e-83 1
UNIPROTKB|P35886 - symbol:gyrB "DNA gyrase subunit B" spe... 831 6.4e-83 1
UNIPROTKB|A9WGP2 - symbol:gyrB "DNA gyrase subunit B" spe... 824 3.6e-82 1
TIGR_CMR|APH_0716 - symbol:APH_0716 "DNA gyrase, B subuni... 824 3.6e-82 1
TIGR_CMR|ECH_0620 - symbol:ECH_0620 "DNA gyrase, B subuni... 813 5.2e-81 1
UNIPROTKB|Q7RHG3 - symbol:PY04024 "DNA topoisomerase II, ... 430 2.3e-79 3
GENEDB_PFALCIPARUM|PFL1915w - symbol:PFL1915w "dna gyrase... 409 1.3e-76 3
UNIPROTKB|Q8I528 - symbol:GyrB "Term=DNA gyrase subunit B... 409 1.3e-76 3
UNIPROTKB|Q9RVW5 - symbol:DR_0906 "DNA gyrase, subunit B"... 744 1.1e-73 1
UNIPROTKB|O69998 - symbol:O69998 "Putative DNA gyrase sub... 403 1.1e-66 2
TAIR|locus:2146658 - symbol:GYRB3 "DNA GYRASE B3" species... 656 2.3e-64 1
UNIPROTKB|Q89M38 - symbol:gyrB "DNA gyrase subunit B" spe... 639 1.4e-62 1
TIGR_CMR|SPO_1253 - symbol:SPO_1253 "DNA topoisomerase IV... 621 1.2e-60 1
UNIPROTKB|A6VD80 - symbol:parE "DNA topoisomerase IV, B s... 610 1.7e-59 1
TIGR_CMR|CBU_0064 - symbol:CBU_0064 "DNA topoisomerase IV... 604 7.3e-59 1
TIGR_CMR|SO_3899 - symbol:SO_3899 "DNA topoisomerase IV, ... 602 1.2e-58 1
UNIPROTKB|P20083 - symbol:parE species:83333 "Escherichia... 597 4.0e-58 1
UNIPROTKB|Q9KPD9 - symbol:VC_2431 "Topoisomerase IV, subu... 582 1.6e-56 1
TIGR_CMR|VC_2431 - symbol:VC_2431 "topoisomerase IV, subu... 582 1.6e-56 1
UNIPROTKB|Q8A3C1 - symbol:BT_3033 "DNA topoisomerase IV s... 178 7.3e-22 2
UNIPROTKB|Q3KL33 - symbol:gyrB_2 "DNA gyrase subunit B" s... 173 2.4e-21 2
DICTYBASE|DDB_G0279737 - symbol:top2mt "DNA topoisomerase... 201 2.3e-12 1
CGD|CAL0005199 - symbol:TOP2 species:5476 "Candida albica... 157 1.3e-08 2
UNIPROTKB|Q5A1E7 - symbol:TOP2 "DNA topoisomerase 2" spec... 157 1.3e-08 2
UNIPROTKB|Q0DYE1 - symbol:Os02g0699700 "DNA topoisomerase... 158 7.8e-08 1
TAIR|locus:2076201 - symbol:TOPII "AT3G23890" species:370... 157 1.7e-07 1
SGD|S000005032 - symbol:TOP2 "Topoisomerase II, relieves ... 148 1.6e-06 1
UNIPROTKB|Q755V8 - symbol:AER410W "DNA topoisomerase 2" s... 147 2.0e-06 1
DICTYBASE|DDB_G0270418 - symbol:top2 "DNA topoisomerase I... 121 3.8e-06 2
FB|FBgn0003732 - symbol:Top2 "Topoisomerase 2" species:72... 136 3.2e-05 1
POMBASE|SPBC1A4.03c - symbol:top2 "DNA topoisomerase II" ... 102 0.00012 2
WB|WBGene00019884 - symbol:R05D3.12 species:6239 "Caenorh... 137 0.00012 2
UNIPROTKB|P34534 - symbol:R05D3.12 "Putative DNA topoisom... 137 0.00012 2
UNIPROTKB|Q7RJ69 - symbol:PY03394 "DNA topoisomerase 2" s... 113 0.00021 4
UNIPROTKB|A8JD08 - symbol:TOP2 "DNA topoisomerase 2" spec... 93 0.00031 2
UNIPROTKB|Q8EYL9 - symbol:LA_4194 "DNA gyrase subunit B" ... 110 0.00043 2
WB|WBGene00010785 - symbol:top-2 species:6239 "Caenorhabd... 92 0.00057 3
UNIPROTKB|Q23670 - symbol:K12D12.1 "Probable DNA topoisom... 92 0.00057 3
>TAIR|locus:2146698 [details] [associations]
symbol:GYRB2 "DNA GYRASE B2" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0003918
"DNA topoisomerase type II (ATP-hydrolyzing) activity"
evidence=IEA;ISS;IBA] [GO:0005524 "ATP binding" evidence=IEA;ISS]
[GO:0005694 "chromosome" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=ISM;IDA] [GO:0006200 "ATP catabolic process" evidence=IBA]
[GO:0006259 "DNA metabolic process" evidence=ISS] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IEA;ISS;IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0009330 "DNA topoisomerase complex
(ATP-hydrolyzing)" evidence=IBA] [GO:0003916 "DNA topoisomerase
activity" evidence=IGI] InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005739 GO:GO:0005524 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0005694 GO:GO:0007059 GO:GO:0006261
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 EMBL:AL391716
GO:GO:0009330 GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719
EMBL:AY039521 EMBL:AY142041 IPI:IPI00527008 IPI:IPI00537479
RefSeq:NP_568133.1 RefSeq:NP_850762.1 UniGene:At.10083
ProteinModelPortal:Q94BZ7 SMR:Q94BZ7 STRING:Q94BZ7 PaxDb:Q94BZ7
PRIDE:Q94BZ7 EnsemblPlants:AT5G04130.1 GeneID:830291
KEGG:ath:AT5G04130 GeneFarm:4066 TAIR:At5g04130 eggNOG:COG0187
HOGENOM:HOG000075155 InParanoid:Q94BZ7 KO:K02470 OMA:IGKNEYN
PhylomeDB:Q94BZ7 ProtClustDB:CLSN2689450 Genevestigator:Q94BZ7
GermOnline:AT5G04130 Gene3D:3.40.50.670 TIGRFAMs:TIGR01059
PROSITE:PS50880 Uniprot:Q94BZ7
Length = 732
Score = 1814 (643.6 bits), Expect = 4.4e-187, P = 4.4e-187
Identities = 356/499 (71%), Positives = 396/499 (79%)
Query: 34 RTNFAIRGVSSQVLTRSNVVLPRAFLSSSIATEAFKENPVSKTYGSEQIQVLEGLEAVRK 93
R F + V SQ L + N + R FLS TEA +E SK Y SEQIQVLEGL+ VRK
Sbjct: 53 RLKFQLTSVLSQRLIQRNAISSR-FLS----TEASQETTTSKGYSSEQIQVLEGLDPVRK 107
Query: 94 RPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLADNSVSVADNGRGIPIDL 153
RP MYIGSTG RGLHHLVYEILDNA+DEAQAGYAS ++V L AD SVSV DNGRGIP DL
Sbjct: 108 RPGMYIGSTGSRGLHHLVYEILDNAIDEAQAGYASKVDVVLHADGSVSVVDNGRGIPTDL 167
Query: 154 HPATNKSALETVLTVLHAXXXXXXXXXXXXXXXXXXXXXXXXXNALSESLEVTVWRDGME 213
HPAT KS+LETVLTVLHA NALSE+LEV+VWRDGME
Sbjct: 168 HPATKKSSLETVLTVLHAGGKFGGTSSGYSVSGGLHGVGLSVVNALSEALEVSVWRDGME 227
Query: 214 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 273
+ Q YSRGKP+TTLTC VLP++SK +GT IRFWPDK+VFTTAI+FDHNTIAGRIRELAF
Sbjct: 228 HKQNYSRGKPITTLTCRVLPLESKGTKGTSIRFWPDKEVFTTAIEFDHNTIAGRIRELAF 287
Query: 274 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITID 333
LNPK+TI+L+KED DPEK QY+EY FAGGL EYV WLNTDK P+HDV+GFR++++G T+D
Sbjct: 288 LNPKVTISLKKEDDDPEKTQYSEYSFAGGLTEYVSWLNTDKNPIHDVLGFRREINGATVD 347
Query: 334 LALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSG 393
+ALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLN+L KKSKTVK+KDISLSG
Sbjct: 348 VALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNTLAKKSKTVKEKDISLSG 407
Query: 394 EHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVXXXXX 453
EHVREGLTCI+SV+VPNPEFEGQTKTRLGNPEVRK+VDQSVQEYLTE+LELHPD+
Sbjct: 408 EHVREGLTCIVSVKVPNPEFEGQTKTRLGNPEVRKIVDQSVQEYLTEFLELHPDILESII 467
Query: 454 XXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSA 513
VR KSVL+SSSLPGKLADCSST PE SEIFIVEGDSAGGSA
Sbjct: 468 SKSLNAYKAALAAKRARELVRSKSVLKSSSLPGKLADCSSTDPEVSEIFIVEGDSAGGSA 527
Query: 514 KQGRDRRFQVIINPLQESI 532
KQGRDRRFQ I+ PL+ I
Sbjct: 528 KQGRDRRFQAIL-PLRGKI 545
>UNIPROTKB|Q5NBJ3 [details] [associations]
symbol:GYRB "DNA gyrase subunit B,
chloroplastic/mitochondrial" species:39947 "Oryza sativa Japonica
Group" [GO:0003918 "DNA topoisomerase type II (ATP-hydrolyzing)
activity" evidence=IBA] [GO:0006261 "DNA-dependent DNA replication"
evidence=IBA] [GO:0006265 "DNA topological change" evidence=IBA]
[GO:0007059 "chromosome segregation" evidence=IBA] [GO:0009295
"nucleoid" evidence=IBA] InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005739 GO:GO:0005524 GO:GO:0009507
GO:GO:0005694 GO:GO:0007059 GO:GO:0006261 Gene3D:3.30.565.10
SUPFAM:SSF55874 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0009295 GO:GO:0006265
GO:GO:0003918 SUPFAM:SSF56719 eggNOG:COG0187 KO:K02470
ProtClustDB:CLSN2689450 Gene3D:3.40.50.670 TIGRFAMs:TIGR01059
PROSITE:PS50880 OMA:IFETTEF EMBL:AP001073 EMBL:AP000969
EMBL:AK102391 RefSeq:NP_001042691.1 UniGene:Os.37563
ProteinModelPortal:Q5NBJ3 STRING:Q5NBJ3 PRIDE:Q5NBJ3 GeneID:4326261
KEGG:dosa:Os01t0268300-01 KEGG:osa:4326261 Gramene:Q5NBJ3
Uniprot:Q5NBJ3
Length = 729
Score = 1651 (586.2 bits), Expect = 8.2e-170, P = 8.2e-170
Identities = 322/499 (64%), Positives = 377/499 (75%)
Query: 34 RTNFAIRGVSSQVLTRSNVVLPRAFLSSSIATEAFKENPVSKTYGSEQIQVLEGLEAVRK 93
R A+ ++ R N V RAF++S+ A+EA +E V+ Y + +QVLE L+ VR
Sbjct: 46 RPRVAVAAAAAGAPLRRNGVAVRAFMASTAASEAMQEKRVAGEYTAANVQVLEALDGVRT 105
Query: 94 RPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLADNSVSVADNGRGIPIDL 153
RP MYIGSTG RGLHHLVYEILDNAVDEAQAGYA+ ++V L DNSVSV DNGRGIP D+
Sbjct: 106 RPGMYIGSTGSRGLHHLVYEILDNAVDEAQAGYATKVDVILHGDNSVSVTDNGRGIPTDI 165
Query: 154 HPATNKSALETVLTVLHAXXXXXXXXXXXXXXXXXXXXXXXXXNALSESLEVTVWRDGME 213
HP T KS +ETVLT++HA NALSE+LEVTVWRDG E
Sbjct: 166 HPQTKKSCVETVLTLMHAGGKFGGSKSGYTVSGGLHGVGLSVVNALSEALEVTVWRDGKE 225
Query: 214 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 273
Y Q YSRGK +T LT L +S RQGTRIRFWPDK +FTT + FD NTIAGRIRELAF
Sbjct: 226 YRQNYSRGKAITMLTSRTLSDESSSRQGTRIRFWPDKHIFTTTMDFDFNTIAGRIRELAF 285
Query: 274 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITID 333
LNP+LTIAL KE+ D + Q+NEY +AGGL EYV+WLNTDKK LHD + FRK++DGIT+D
Sbjct: 286 LNPELTIALTKEEDDLQV-QHNEYCYAGGLVEYVKWLNTDKKSLHDPIAFRKEMDGITVD 344
Query: 334 LALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSG 393
++LQWCSD+YSDT+LGYANSIRTIDGGTHI+G+K SLTRT+N+ KKSKT+KDKDISLSG
Sbjct: 345 VSLQWCSDSYSDTVLGYANSIRTIDGGTHIDGLKTSLTRTINNFAKKSKTLKDKDISLSG 404
Query: 394 EHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVXXXXX 453
EHVREG+TCII+V+VPNPEFEGQTKTRLGNPEVR++V+QSVQE LTEYLELHPDV
Sbjct: 405 EHVREGMTCIIAVKVPNPEFEGQTKTRLGNPEVRRIVEQSVQENLTEYLELHPDVLDSIL 464
Query: 454 XXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSA 513
VR KSVL+SSSLPGKLADC+S+ PEESEIFIVEGDSAGGSA
Sbjct: 465 SKSLNALKAALAAKRARELVRTKSVLKSSSLPGKLADCASSDPEESEIFIVEGDSAGGSA 524
Query: 514 KQGRDRRFQVIINPLQESI 532
KQGRDR+FQ I+ PL+ I
Sbjct: 525 KQGRDRKFQAIL-PLRGKI 542
>UNIPROTKB|Q7NHM9 [details] [associations]
symbol:gyrB "DNA gyrase subunit B" species:251221
"Gloeobacter violaceus PCC 7421" [GO:0003918 "DNA topoisomerase
type II (ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
HAMAP:MF_01898 InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
GO:GO:0007059 GO:GO:0006261 Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 GO:GO:0009295 GO:GO:0006265 GO:GO:0003918
SUPFAM:SSF56719 KO:K02470 Gene3D:3.40.50.670 TIGRFAMs:TIGR01059
OMA:IFETTEF ProtClustDB:PRK05644 EMBL:BA000045
GenomeReviews:BA000045_GR HSSP:P06982 RefSeq:NP_925452.1
ProteinModelPortal:Q7NHM9 GeneID:2600907 KEGG:gvi:gvip344
PATRIC:22044491 BioCyc:GVIO251221:GH9A-2555-MONOMER Uniprot:Q7NHM9
Length = 644
Score = 1225 (436.3 bits), Expect = 1.1e-124, P = 1.1e-124
Identities = 244/461 (52%), Positives = 311/461 (67%)
Query: 73 VSKTYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEV 132
+++TYG+EQIQVLEGLE VRKRP MYIGSTGPRGLHHLVYEI+DN+VDEA AG+ +I +
Sbjct: 1 MTETYGAEQIQVLEGLEHVRKRPGMYIGSTGPRGLHHLVYEIVDNSVDEALAGHCKHIAI 60
Query: 133 ALLADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAXXXXXXXXXXXXXXXXXXXXX 192
+L AD S ++ D+GRGIP D HP T KS +ETVLTVL A
Sbjct: 61 SLGADGSATITDDGRGIPTDTHPRTGKSTIETVLTVLGAGGKFGGGGYKVSGGLHGVGAA 120
Query: 193 XXXXNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQV 252
NALS L T+WR+G +Y Q++ RG P L + DS+ R+GT I F PD ++
Sbjct: 121 VV--NALSTILTATIWREGKQYIQRFHRGIPEGGLA---VSSDSQKRRGTMISFLPDPEI 175
Query: 253 FTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNT 312
FTT + FD +T+ R RELAFLN + R D E + Y + GG+ EYV+++
Sbjct: 176 FTTGVDFDFDTLLSRFRELAFLNAG--VEFRFSDLRGETERTESYIYEGGIREYVKYMTR 233
Query: 313 DKKPLH-DVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLT 371
+K LH D++ ++ DG++++ ALQW +D Y+D +LG+AN+IRTIDGGTH+EG+KA LT
Sbjct: 234 EKAALHPDIIFINQERDGVSVECALQWSTDVYNDNVLGFANNIRTIDGGTHLEGLKAVLT 293
Query: 372 RTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVD 431
RT NS +K+ +KD D +L+GEHVREGLT ++SV+VPNPEFEGQTKT+LGNPEVR +VD
Sbjct: 294 RTFNSFARKANKLKDGDKNLTGEHVREGLTAVLSVKVPNPEFEGQTKTKLGNPEVRGIVD 353
Query: 432 QSVQEYLTEYLELHPDVXXXXXXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGKLADC 491
+ E LTEYLE HPDV VR+KS L SS+LPGKLADC
Sbjct: 354 GVISEKLTEYLEFHPDVVASILEKALQSMQAEEAARKARDLVRRKSALESSTLPGKLADC 413
Query: 492 SSTTPEESEIFIVEGDSAGGSAKQGRDRRFQVIINPLQESI 532
S P ESE+F+VEGDSAGGSAKQGRDRRFQ I+ PL+ I
Sbjct: 414 QSRDPAESEVFLVEGDSAGGSAKQGRDRRFQAIL-PLRGKI 453
>UNIPROTKB|A8IIG8 [details] [associations]
symbol:TOP3 "DNA gyrase subunit B-like protein"
species:3055 "Chlamydomonas reinhardtii" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IBA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IBA]
[GO:0006265 "DNA topological change" evidence=IBA] [GO:0007059
"chromosome segregation" evidence=IBA] [GO:0009295 "nucleoid"
evidence=IBA] InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR013506 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986
Pfam:PF02518 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0005694 GO:GO:0007059 GO:GO:0006261 Gene3D:3.30.565.10
SUPFAM:SSF55874 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0009295 GO:GO:0006265
GO:GO:0003918 SUPFAM:SSF56719 eggNOG:COG0187 KO:K02470
ProtClustDB:CLSN2689450 Gene3D:3.40.50.670 EMBL:DS496117
RefSeq:XP_001690535.1 UniGene:Cre.5744 ProteinModelPortal:A8IIG8
STRING:A8IIG8 EnsemblPlants:EDP05794 GeneID:5716144
KEGG:cre:CHLREDRAFT_114600 BioCyc:CHLAMY:CHLREDRAFT_114600-MONOMER
Uniprot:A8IIG8
Length = 649
Score = 1131 (403.2 bits), Expect = 1.0e-114, P = 1.0e-114
Identities = 233/457 (50%), Positives = 298/457 (65%)
Query: 83 QVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVAL-LADNSVS 141
QVLEGLE VRKRP MYIG TG GLHHL++E++DNAVDE QAG+AS +EV + L+ VS
Sbjct: 1 QVLEGLEPVRKRPGMYIGGTGSDGLHHLIWEVVDNAVDEVQAGHASAVEVDVDLSSGWVS 60
Query: 142 VADNGRGIPIDLHPATNKSALETVLTVLHAXXXXXXXXXXXXXXXXXXXXXXXXXNALSE 201
V DNGRGIP+D+HP T KSALETVLTVLHA NALS
Sbjct: 61 VVDNGRGIPVDVHPVTGKSALETVLTVLHAGGKFGGDNSGYKVSGGLHGVGISVVNALSS 120
Query: 202 SLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKD--RQGTRIRFWPDKQVFTTAIQF 259
LEVTVWR G Y Q+YSRG P+ L +LP S++ R GT++RF D +F + +
Sbjct: 121 ELEVTVWRAGSRYSQRYSRGAPLEELRVQLLPPGSEEAGRSGTQVRFLYDASIFAKDVAY 180
Query: 260 DHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD 319
+ IA R+ ELAFLN + TI R + Q+ + ++GGL E+V L PLH+
Sbjct: 181 SADVIATRLHELAFLNARATIRFRALRRGKPEGQWQVFQYSGGLREFVGCLQAAYTPLHE 240
Query: 320 -VVGFRKDV-DGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSL 377
+V R D G+ ++ ALQW +D++ + + G+ANSI T+DGGTH+EG++A LTR + L
Sbjct: 241 ALVVTRADGGSGVVVEAALQWAADSFKEEVRGFANSIHTVDGGTHMEGLRAGLTRAVTQL 300
Query: 378 GKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEY 437
G+K+K +KD D LSGEHVREGL ++SV+VPNPEFEGQTKTRLGNPEVRK+V+ +V E
Sbjct: 301 GRKAKQIKDSDPPLSGEHVREGLGAVVSVKVPNPEFEGQTKTRLGNPEVRKIVENAVYEA 360
Query: 438 LTEYLELHPDVXXXXXXXXXXXXXXXXXXXXXXXXVRQKSVLRS--SSLPGKLADCSSTT 495
+ E+LE HP VR+K+ L + S+LPGKLADC+ST
Sbjct: 361 VGEWLEAHPAALAALCAKALTSARAAEAARKARELVRRKTSLFTGRSTLPGKLADCTSTN 420
Query: 496 PEESEIFIVEGDSAGGSAKQGRDRRFQVIINPLQESI 532
EE+EI+IVEGDSAGGSAKQ RDRRFQ I+ PL+ I
Sbjct: 421 REETEIYIVEGDSAGGSAKQARDRRFQAIL-PLKGKI 456
>TIGR_CMR|CHY_2705 [details] [associations]
symbol:CHY_2705 "DNA gyrase, B subunit" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=ISS]
[GO:0006265 "DNA topological change" evidence=ISS] [GO:0009330 "DNA
topoisomerase complex (ATP-hydrolyzing)" evidence=ISS]
HAMAP:MF_01898 InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0006261
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0006265
GO:GO:0003918 SUPFAM:SSF56719 eggNOG:COG0187 KO:K02470
Gene3D:3.40.50.670 TIGRFAMs:TIGR01059 OMA:IFETTEF
ProtClustDB:PRK05644 HOGENOM:HOG000075156 RefSeq:YP_361487.1
ProteinModelPortal:Q3A8P7 SMR:Q3A8P7 STRING:Q3A8P7 GeneID:3726578
KEGG:chy:CHY_2705 PATRIC:21278431
BioCyc:CHYD246194:GJCN-2703-MONOMER Uniprot:Q3A8P7
Length = 635
Score = 1063 (379.3 bits), Expect = 1.7e-107, P = 1.7e-107
Identities = 214/456 (46%), Positives = 302/456 (66%)
Query: 77 YGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLA 136
YG+E+IQVL+GLE VRKRPAMYIGST +GLHHLVYE++DN++DEA AG+ + IEV +
Sbjct: 10 YGAEEIQVLKGLEGVRKRPAMYIGSTNEKGLHHLVYEVVDNSIDEALAGFCNRIEVIIHK 69
Query: 137 DNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAXXXXXXXXXXXXXXXXXXXXXXXXX 196
D S++VADNGRGIP+D+HP K A+E VLT+LHA
Sbjct: 70 DGSITVADNGRGIPVDIHPEVGKPAVEVVLTMLHAGGKFGGGGYKVSGGLHGVGVSVV-- 127
Query: 197 NALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTA 256
NALSE LEV + RDG Y+QK+SRG+P+T L + GT I F PD ++F T
Sbjct: 128 NALSEWLEVRIKRDGNLYYQKFSRGEPITELKI----IGKSKSTGTIITFKPDAEIFET- 182
Query: 257 IQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKP 316
++F+++T+A R+ EL++LN + I L+ E + K + E+ +GG+++Y+++LN +K+P
Sbjct: 183 VEFNYDTLAKRLLELSYLNKNVKIILKDERIN--KEEIFEH--SGGIKDYLKYLNKNKEP 238
Query: 317 LHDVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNS 376
LH ++ F K+ D + +++ALQ+C+ ++S+ +L + N+I T +GGTH G K +LTR +N
Sbjct: 239 LHKIIYFEKEKDEVVVEVALQYCN-SFSENILSFTNNINTTEGGTHEIGFKTALTRVIND 297
Query: 377 LGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQE 436
KK +K+ ++SL GE +REGLT IISV+VP+P+FEGQTKT+L N EVR +VD V +
Sbjct: 298 YAKKYNLIKENNLSLQGEDIREGLTAIISVKVPDPQFEGQTKTKLVNTEVRSIVDSIVSD 357
Query: 437 YLTEYLELHPDVXXXXXXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGKLADCSSTTP 496
YL+ YLE +P V R+K+ L S++LPGKLADCS P
Sbjct: 358 YLSTYLEENPAVGKKLIENAIRAARAREAARKARELARRKTALESNTLPGKLADCSEKDP 417
Query: 497 EESEIFIVEGDSAGGSAKQGRDRRFQVIINPLQESI 532
E+++VEGDSAGGSAKQGRDRRFQ I+ PL+ I
Sbjct: 418 SLCELYLVEGDSAGGSAKQGRDRRFQAIL-PLRGKI 452
>UNIPROTKB|P77993 [details] [associations]
symbol:gyrB "DNA gyrase subunit B" species:243274
"Thermotoga maritima MSB8" [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
HAMAP:MF_01898 InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
GO:GO:0007059 GO:GO:0006261 Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 EMBL:AE000512 GenomeReviews:AE000512_GR
GO:GO:0009295 GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719
eggNOG:COG0187 KO:K02470 Gene3D:3.40.50.670 TIGRFAMs:TIGR01059
PROSITE:PS50880 OMA:IFETTEF ProtClustDB:PRK05644 EMBL:U49692
PIR:JC4960 RefSeq:NP_228642.1 ProteinModelPortal:P77993 SMR:P77993
DNASU:898504 GeneID:898504 KEGG:tma:TM0833 PATRIC:23936592
Uniprot:P77993
Length = 636
Score = 1006 (359.2 bits), Expect = 1.8e-101, P = 1.8e-101
Identities = 218/465 (46%), Positives = 293/465 (63%)
Query: 77 YGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLA 136
Y +E I+VL+GLE VR RP MYIGSTG RGLHHLVYE++DN+VDEA AGY I V L
Sbjct: 4 YSAESIKVLKGLEPVRMRPGMYIGSTGKRGLHHLVYEVVDNSVDEALAGYCDWIRVTLHE 63
Query: 137 DNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAXXXXXXXXXXXXXXXXXXXXXXXXX 196
D SV V DNGRGIP+D+HP +SALE V TVLHA
Sbjct: 64 DGSVEVEDNGRGIPVDIHPEEGRSALEVVFTVLHAGGKFSKDSYKISGGLHGVGVSVV-- 121
Query: 197 NALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTA 256
NALSE LEV V RDG Y Q+Y RGKPVT + + D+ GT +RF PD +F+
Sbjct: 122 NALSEWLEVRVHRDGKIYRQRYERGKPVTPVEV----IGETDKHGTIVRFKPDPLIFSET 177
Query: 257 IQFDHNTIAGRIRELAFLNPKLTIALRKEDS-DPEKNQYNEYFFAGGLEEYVQWLNTDKK 315
+FD + + R+RE+AFL P L I ED + EK + F GG+ EYV++LN KK
Sbjct: 178 -EFDPDILEHRLREIAFLVPGLKIEF--EDRINGEKKTFK---FDGGIVEYVKYLNRGKK 231
Query: 316 PLHDVVGFRKDV--------DGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVK 367
LHDV+ ++ D + +++A Q+ +D+YS+ ++ +AN+I+T+DGGTH+ K
Sbjct: 232 ALHDVIHIKRTEKVKTKNGEDEVIVEIAFQY-TDSYSEDIVSFANTIKTVDGGTHVTAFK 290
Query: 368 ASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVR 427
++LTR +N GKK +K KD S GE VREGLT +ISV V NPEFEGQTK++LGN EV+
Sbjct: 291 STLTRLMNEYGKKHNFLK-KDDSFQGEDVREGLTAVISVYVKNPEFEGQTKSKLGNEEVK 349
Query: 428 KVVDQSVQEYLTEYLELHPDVXXXXXXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGK 487
+ V ++++E L + + +P++ VR+K+VL++++LPGK
Sbjct: 350 EAVTKAMREELKKIFDANPELVKTILSKIMSTKQAREAAKRAREMVRRKNVLQNTTLPGK 409
Query: 488 LADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQVIINPLQESI 532
LADCSST E++E+FIVEGDSAGGSAKQ RDR FQ ++ P++ I
Sbjct: 410 LADCSSTHREKTELFIVEGDSAGGSAKQARDREFQAVL-PIRGKI 453
>UNIPROTKB|Q8TQG0 [details] [associations]
symbol:gyrB "DNA gyrase subunit B" species:188937
"Methanosarcina acetivorans C2A" [GO:0003918 "DNA topoisomerase
type II (ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
HAMAP:MF_01898 InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
GO:GO:0007059 GO:GO:0006261 Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 GO:GO:0009295 EMBL:AE010299
GenomeReviews:AE010299_GR GO:GO:0006265 GO:GO:0003918
SUPFAM:SSF56719 eggNOG:COG0187 KO:K02470 Gene3D:3.40.50.670
TIGRFAMs:TIGR01059 OMA:IFETTEF ProtClustDB:PRK05644
RefSeq:NP_616517.1 HSSP:P06982 ProteinModelPortal:Q8TQG0
GeneID:1473472 KEGG:mac:MA1584 BioCyc:MACE188937:GI2O-1646-MONOMER
Uniprot:Q8TQG0
Length = 634
Score = 992 (354.3 bits), Expect = 5.6e-100, P = 5.6e-100
Identities = 215/459 (46%), Positives = 287/459 (62%)
Query: 75 KTYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVAL 134
+ Y + +IQVLEGLEAVRKRP+MYIGST RGLHHLVYE++DN++DEA AG+ + ++V +
Sbjct: 5 QVYDASRIQVLEGLEAVRKRPSMYIGSTDSRGLHHLVYEVVDNSIDEALAGFCTRVDVTI 64
Query: 135 LADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAXXXXXXXXXXXXXXXXXXXXXXX 194
D SV+V DNGRGIPID HP KSALE V+TVLHA
Sbjct: 65 NPDGSVTVLDNGRGIPIDPHPVHKKSALEVVMTVLHAGGKFDKNTYKVSGGLHGVGVSVV 124
Query: 195 XXNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFT 254
NALSE L V V RDG +Y Q+Y RGKP V + + GT+ F PD ++F
Sbjct: 125 --NALSEWLNVEVERDGKKYFQRYIRGKP----EAEVQETGTSEITGTKTTFKPDARIFE 178
Query: 255 TAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDK 314
T F ++ ++ R+RELAFLN LTI L K+ PE Q + ++GG+ E+V++LN K
Sbjct: 179 TT-DFQYDILSNRLRELAFLNRGLTINL-KDLRSPE-GQAETFIYSGGIVEFVEYLNKKK 235
Query: 315 KPLHDV-VGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRT 373
+PLH+ + F + D + +++A+Q+ +++Y++ + +AN+I T +GGTHI G K +LTR
Sbjct: 236 QPLHEKPIYFERQRDDMVVEIAMQY-TNSYTENVYSFANNINTHEGGTHIIGFKTALTRV 294
Query: 374 LNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQS 433
N K +K K+ D L+G+ VREGLT IISV++ P+FEGQTKTRLGN EV+ +VD
Sbjct: 295 ANDYIKANKLSKE-DAKLTGDDVREGLTAIISVKLMEPQFEGQTKTRLGNSEVKGIVDSL 353
Query: 434 VQEYLTEYLELHPDVXXXXXXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGKLADCSS 493
V + L EY E +P V R+KS L S+LPGKLADCS
Sbjct: 354 VTDGLAEYFEENPKVANVILEKALLAQKAREAAKKARELTRRKSALEVSTLPGKLADCSE 413
Query: 494 TTPEESEIFIVEGDSAGGSAKQGRDRRFQVIINPLQESI 532
P EI+IVEG+SAGGSAKQGRDR FQ I+ PL+ I
Sbjct: 414 KDPSVCEIYIVEGNSAGGSAKQGRDRGFQAIL-PLRGKI 451
>UNIPROTKB|P05652 [details] [associations]
symbol:gyrB "DNA gyrase subunit B" species:224308 "Bacillus
subtilis subsp. subtilis str. 168" [GO:0003918 "DNA topoisomerase
type II (ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
HAMAP:MF_01898 InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
GO:GO:0007059 GO:GO:0006261 EMBL:AL009126 GenomeReviews:AL009126_GR
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0009295
EMBL:D26185 EMBL:X02369 GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719
eggNOG:COG0187 KO:K02470 Gene3D:3.40.50.670 TIGRFAMs:TIGR01059
PROSITE:PS50880 ProtClustDB:PRK05644 PIR:E22930 RefSeq:NP_387887.1
ProteinModelPortal:P05652 SMR:P05652 PRIDE:P05652
EnsemblBacteria:EBBACT00000000768 GeneID:939456 KEGG:bsu:BSU00060
PATRIC:18971459 GenoList:BSU00060 HOGENOM:HOG000075156 OMA:MDRILAN
BioCyc:BSUB:BSU00060-MONOMER BindingDB:P05652 ChEMBL:CHEMBL4324
Uniprot:P05652
Length = 638
Score = 991 (353.9 bits), Expect = 7.1e-100, P = 7.1e-100
Identities = 202/458 (44%), Positives = 279/458 (60%)
Query: 76 TYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALL 135
+Y QIQVLEGLEAVRKRP MYIGST +GLHHLV+EI+DN++DEA AGY ++I + +
Sbjct: 7 SYDENQIQVLEGLEAVRKRPGMYIGSTNSKGLHHLVWEIVDNSIDEALAGYCTDINIQIE 66
Query: 136 ADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAXXXXXXXXXXXXXXXXXXXXXXXX 195
DNS++V DNGRGIP+ +H + A+E ++TVLHA
Sbjct: 67 KDNSITVVDNGRGIPVGIHEKMGRPAVEVIMTVLHAGGKFDGSGYKVSGGLHGVGASVV- 125
Query: 196 XNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTT 255
NALS L+VTV RDG + Q Y RG PVT L + D GT F PD ++F+
Sbjct: 126 -NALSTELDVTVHRDGKIHRQTYKRGVPVTDLEI----IGETDHTGTTTHFVPDPEIFSE 180
Query: 256 AIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKK 315
++D++ +A R+RELAFL + I + ED + + NEY + GG++ YV++LN K+
Sbjct: 181 TTEYDYDLLANRVRELAFLTKGVNITI--EDKREGQERKNEYHYEGGIKSYVEYLNRSKE 238
Query: 316 PLHDV-VGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTL 374
+H+ + + DGIT+++ALQ+ +D+Y+ + + N+I T +GGTH G K LTR +
Sbjct: 239 VVHEEPIYIEGEKDGITVEVALQY-NDSYTSNIYSFTNNINTYEGGTHEAGFKTGLTRVI 297
Query: 375 NSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSV 434
N +K +K+ D +LSG+ VREGLT IIS++ P+P+FEGQTKT+LGN E R + D
Sbjct: 298 NDYARKKGLIKENDPNLSGDDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDTLF 357
Query: 435 QEYLTEYLELHPDVXXXXXXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGKLADCSST 494
+ ++ +PD R+KS L S+LPGKLADCSS
Sbjct: 358 STAMETFMLENPDAAKKIVDKGLMAARARMAAKKARELTRRKSALEISNLPGKLADCSSK 417
Query: 495 TPEESEIFIVEGDSAGGSAKQGRDRRFQVIINPLQESI 532
P SE++IVEGDSAGGSAKQGRDR FQ I+ PL+ I
Sbjct: 418 DPSISELYIVEGDSAGGSAKQGRDRHFQAIL-PLRGKI 454
>TIGR_CMR|BA_0005 [details] [associations]
symbol:BA_0005 "DNA gyrase, B subunit" species:198094
"Bacillus anthracis str. Ames" [GO:0003916 "DNA topoisomerase
activity" evidence=ISS] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=ISS] [GO:0006265 "DNA
topological change" evidence=ISS] [GO:0009330 "DNA topoisomerase
complex (ATP-hydrolyzing)" evidence=ISS] HAMAP:MF_01898
InterPro:IPR001241 InterPro:IPR002288 InterPro:IPR003594
InterPro:IPR011557 InterPro:IPR013506 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986
Pfam:PF02518 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0005737 GO:GO:0005694 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719
eggNOG:COG0187 HOGENOM:HOG000075155 KO:K02470 Gene3D:3.40.50.670
TIGRFAMs:TIGR01059 PROSITE:PS50880 OMA:IFETTEF EMBL:AF090333
RefSeq:NP_842577.1 RefSeq:YP_016608.1 RefSeq:YP_026296.1
ProteinModelPortal:Q9X3Y6 PRIDE:Q9X3Y6 DNASU:1083919
EnsemblBacteria:EBBACT00000010328 EnsemblBacteria:EBBACT00000015641
EnsemblBacteria:EBBACT00000021045 GeneID:1083919 GeneID:2816408
GeneID:2848886 KEGG:ban:BA_0005 KEGG:bar:GBAA_0005 KEGG:bat:BAS0005
ProtClustDB:PRK05644 BioCyc:BANT260799:GJAJ-5-MONOMER
BioCyc:BANT261594:GJ7F-5-MONOMER Uniprot:Q9X3Y6
Length = 640
Score = 979 (349.7 bits), Expect = 1.3e-98, P = 1.3e-98
Identities = 210/460 (45%), Positives = 281/460 (61%)
Query: 76 TYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALL 135
+Y QIQVLEGLEAVRKRP MYIGST +GLHHLV+EI+DN++DEA AGY I V++
Sbjct: 10 SYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCDEINVSIE 69
Query: 136 ADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAXXXXXXXXXXXXXXXXXXXXXXXX 195
DNS+ V DNGRGIP+ + + A+E ++TVLHA
Sbjct: 70 EDNSIRVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGASVV- 128
Query: 196 XNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVF-- 253
NALS LEV V R+G ++QKY RG PV L + D+ GT RF PD ++F
Sbjct: 129 -NALSTELEVFVHREGKIHYQKYERGIPVADLKV----IGDTDQTGTITRFKPDPEIFQE 183
Query: 254 TTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTD 313
TT +FD T+A R+RELAFLN + + + ED K Q E+ + GG++ YV+ LN
Sbjct: 184 TTVYEFD--TLATRMRELAFLNRNIKLTI--EDKREHK-QKKEFHYEGGIKSYVEHLNRS 238
Query: 314 KKPLHDV-VGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTR 372
K+P+H+ V DGI ++++LQ+ ++ Y++ + + N+I T +GGTH G K +LTR
Sbjct: 239 KQPIHEEPVYVEGSKDGIQVEVSLQY-NEGYTNNIYSFTNNIHTYEGGTHEVGFKTALTR 297
Query: 373 TLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQ 432
+N G+K+ +KD D +L+GE VREGLT I+S++ PNP+FEGQTKT+LGN E R + +
Sbjct: 298 VINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITES 357
Query: 433 SVQEYLTEYLELHPDVXXXXXXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGKLADCS 492
E ++L +P+V R+KS L SSLPGKLADCS
Sbjct: 358 VFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCS 417
Query: 493 STTPEESEIFIVEGDSAGGSAKQGRDRRFQVIINPLQESI 532
S P SEI+IVEGDSAGGSAKQGRDR FQ I+ PL+ I
Sbjct: 418 SKDPAISEIYIVEGDSAGGSAKQGRDRHFQAIL-PLKGKI 456
>TIGR_CMR|DET_0004 [details] [associations]
symbol:DET_0004 "DNA gyrase, B subunit" species:243164
"Dehalococcoides ethenogenes 195" [GO:0003918 "DNA topoisomerase
type II (ATP-hydrolyzing) activity" evidence=ISS] [GO:0006265 "DNA
topological change" evidence=ISS] [GO:0009330 "DNA topoisomerase
complex (ATP-hydrolyzing)" evidence=ISS] HAMAP:MF_01898
InterPro:IPR001241 InterPro:IPR002288 InterPro:IPR003594
InterPro:IPR011557 InterPro:IPR013506 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986
Pfam:PF02518 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0005737 GO:GO:0005694 GO:GO:0006261 EMBL:CP000027
GenomeReviews:CP000027_GR Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719
eggNOG:COG0187 HOGENOM:HOG000075155 KO:K02470 Gene3D:3.40.50.670
TIGRFAMs:TIGR01059 OMA:IFETTEF ProtClustDB:PRK05644
RefSeq:YP_180759.1 ProteinModelPortal:Q3ZAJ0 STRING:Q3ZAJ0
GeneID:3229139 KEGG:det:DET0004 PATRIC:21607113
BioCyc:DETH243164:GJNF-4-MONOMER Uniprot:Q3ZAJ0
Length = 642
Score = 968 (345.8 bits), Expect = 2.0e-97, P = 2.0e-97
Identities = 210/460 (45%), Positives = 276/460 (60%)
Query: 74 SKTYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVA 133
++ Y + IQVLEGL AVRKRP MYIGST RGLHHLVYEI+ N+VDEA AG I+V
Sbjct: 13 AENYNASDIQVLEGLAAVRKRPGMYIGSTDQRGLHHLVYEIVYNSVDEAMAGVCDRIKVI 72
Query: 134 LLADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAXXXXXXXXXXXXXXXXXXXXXX 193
+ D SVSV DNGRGIPID+HP T SALETV+TVLHA
Sbjct: 73 IYKDGSVSVEDNGRGIPIDIHPVTKISALETVMTVLHAGAKFGGKTYQVSGGLHGVGASV 132
Query: 194 XXXNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVF 253
NAL+E V V R+G Y Q Y RGKP T L V D GT F D Q+F
Sbjct: 133 V--NALAEWTTVKVRRNGKIYQQSYQRGKPSTPLE----EVGVSDGSGTTTIFKADSQIF 186
Query: 254 TTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTD 313
+T ++D T+ R+RE+A+LN L + + E SD E+ Y+F GG+ +V+ LN +
Sbjct: 187 STT-EYDFETLTDRLREIAYLNKGLEVYIYDEQSDQERT----YYFEGGITGFVRHLNRN 241
Query: 314 KKPLH-DVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTR 372
++ H + K D +++A+Q+ +D YSD+ L +AN + TIDGGTH+ G +++LTR
Sbjct: 242 REVRHRQPIYITKKSDSTILEVAIQY-NDGYSDSTLTFANCVNTIDGGTHLTGFRSALTR 300
Query: 373 TLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQ 432
N KSK +KD D +L G+ VREG+ I+SV++P P+FEGQTK +LGN E++ V+
Sbjct: 301 AFNDYAHKSKFLKDTDPNLMGDDVREGIVAIVSVKLPEPQFEGQTKGKLGNIEIKSFVES 360
Query: 433 SVQEYLTEYLELHPDVXXXXXXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGKLADCS 492
+V E L+ YLE HPD + +KS L + +LPGKLADCS
Sbjct: 361 AVTEQLSLYLEEHPDDTKRILEKCITAAKAREAARKARDLIIRKSALDTGTLPGKLADCS 420
Query: 493 STTPEESEIFIVEGDSAGGSAKQGRDRRFQVIINPLQESI 532
E+F+VEGDSAGGSAKQGR+RRFQ I+ PL+ I
Sbjct: 421 ERDASLCELFLVEGDSAGGSAKQGRNRRFQAIL-PLRGKI 459
>UNIPROTKB|Q74H89 [details] [associations]
symbol:gyrB "DNA gyrase subunit B" species:243231
"Geobacter sulfurreducens PCA" [GO:0003918 "DNA topoisomerase type
II (ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
HAMAP:MF_01898 InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
GO:GO:0007059 GO:GO:0006261 EMBL:AE017180 GenomeReviews:AE017180_GR
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0009295
GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719 HOGENOM:HOG000075155
KO:K02470 Gene3D:3.40.50.670 TIGRFAMs:TIGR01059 OMA:IFETTEF
ProtClustDB:PRK14939 HSSP:P06982 RefSeq:NP_951065.1
ProteinModelPortal:Q74H89 SMR:Q74H89 GeneID:2686080
KEGG:gsu:GSU0003 PATRIC:22022743 BioCyc:GSUL243231:GH27-3-MONOMER
Uniprot:Q74H89
Length = 795
Score = 958 (342.3 bits), Expect = 2.2e-96, P = 2.2e-96
Identities = 198/457 (43%), Positives = 287/457 (62%)
Query: 77 YGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLA 136
YG+++I+VLEGLEAVRKRPAMYIGST +GLHHLVYEI+DN++DEA AGY + + V +
Sbjct: 9 YGADKIKVLEGLEAVRKRPAMYIGSTAAQGLHHLVYEIVDNSIDEALAGYCNEVNVTIHL 68
Query: 137 DNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAXXXXXXXXXXXXXXXXXXXXXXXXX 196
D S++V DNGRGIP D+HP K A E LTVLHA
Sbjct: 69 DGSLTVVDNGRGIPTDIHPTEGKPAAEVALTVLHAGGKFDNTSYKVSGGLHGVGVSVV-- 126
Query: 197 NALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTA 256
NALS LE+ + RDG Y Q Y+ G P T L V+ ++K R GT+I F PD +F T
Sbjct: 127 NALSRKLELEIRRDGKVYRQSYACGDPQTPL--EVMG-ETKKR-GTKITFLPDDTIFETT 182
Query: 257 IQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKP 316
+F + ++ R+RELAFLN + I + E E+ +++++ + GG+ +V++LN ++
Sbjct: 183 -EFSFDVLSQRLRELAFLNAGVRITITDER---EEGKHHDFHYEGGIVSFVEYLNRNRTA 238
Query: 317 LHDV-VGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLN 375
LH + F+ + G+ +++ALQ+ +D+Y + + +AN+I T +GGTH+ G +A+LTRT+N
Sbjct: 239 LHPKPIYFKGEKAGVEMEVALQY-NDSYDEKVFSFANNINTHEGGTHLVGFRAALTRTMN 297
Query: 376 SLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQ 435
+ ++ +K + +++SGE +REGLT +ISV++P P+FEGQTKT+LGN EV+ V+ +
Sbjct: 298 TYAAANELLKKEKVAISGEDLREGLTAVISVKIPQPQFEGQTKTKLGNSEVKGYVESLMN 357
Query: 436 EYLTEYLELHPDVXXXXXXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGKLADCSSTT 495
E L +LE +P + R+K L S+LPGKLADC
Sbjct: 358 EKLAVFLEENPKIAKDIIGKSIEAARAREAARKARELTRRKGALDISNLPGKLADCQERD 417
Query: 496 PEESEIFIVEGDSAGGSAKQGRDRRFQVIINPLQESI 532
P E+++VEGDSAGGSAKQGRDR+FQ I+ PL+ I
Sbjct: 418 PALCELYLVEGDSAGGSAKQGRDRKFQAIL-PLKGKI 453
>TIGR_CMR|GSU_0003 [details] [associations]
symbol:GSU_0003 "DNA gyrase, B subunit" species:243231
"Geobacter sulfurreducens PCA" [GO:0003918 "DNA topoisomerase type
II (ATP-hydrolyzing) activity" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] [GO:0006265 "DNA topological change"
evidence=ISS] [GO:0009330 "DNA topoisomerase complex
(ATP-hydrolyzing)" evidence=ISS] HAMAP:MF_01898 InterPro:IPR001241
InterPro:IPR002288 InterPro:IPR003594 InterPro:IPR011557
InterPro:IPR013506 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986 Pfam:PF02518
PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387 SMART:SM00433
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737
GO:GO:0005694 GO:GO:0007059 GO:GO:0006261 EMBL:AE017180
GenomeReviews:AE017180_GR Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 GO:GO:0009295 GO:GO:0006265 GO:GO:0003918
SUPFAM:SSF56719 HOGENOM:HOG000075155 KO:K02470 Gene3D:3.40.50.670
TIGRFAMs:TIGR01059 OMA:IFETTEF ProtClustDB:PRK14939 HSSP:P06982
RefSeq:NP_951065.1 ProteinModelPortal:Q74H89 SMR:Q74H89
GeneID:2686080 KEGG:gsu:GSU0003 PATRIC:22022743
BioCyc:GSUL243231:GH27-3-MONOMER Uniprot:Q74H89
Length = 795
Score = 958 (342.3 bits), Expect = 2.2e-96, P = 2.2e-96
Identities = 198/457 (43%), Positives = 287/457 (62%)
Query: 77 YGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLA 136
YG+++I+VLEGLEAVRKRPAMYIGST +GLHHLVYEI+DN++DEA AGY + + V +
Sbjct: 9 YGADKIKVLEGLEAVRKRPAMYIGSTAAQGLHHLVYEIVDNSIDEALAGYCNEVNVTIHL 68
Query: 137 DNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAXXXXXXXXXXXXXXXXXXXXXXXXX 196
D S++V DNGRGIP D+HP K A E LTVLHA
Sbjct: 69 DGSLTVVDNGRGIPTDIHPTEGKPAAEVALTVLHAGGKFDNTSYKVSGGLHGVGVSVV-- 126
Query: 197 NALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTA 256
NALS LE+ + RDG Y Q Y+ G P T L V+ ++K R GT+I F PD +F T
Sbjct: 127 NALSRKLELEIRRDGKVYRQSYACGDPQTPL--EVMG-ETKKR-GTKITFLPDDTIFETT 182
Query: 257 IQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKP 316
+F + ++ R+RELAFLN + I + E E+ +++++ + GG+ +V++LN ++
Sbjct: 183 -EFSFDVLSQRLRELAFLNAGVRITITDER---EEGKHHDFHYEGGIVSFVEYLNRNRTA 238
Query: 317 LHDV-VGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLN 375
LH + F+ + G+ +++ALQ+ +D+Y + + +AN+I T +GGTH+ G +A+LTRT+N
Sbjct: 239 LHPKPIYFKGEKAGVEMEVALQY-NDSYDEKVFSFANNINTHEGGTHLVGFRAALTRTMN 297
Query: 376 SLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQ 435
+ ++ +K + +++SGE +REGLT +ISV++P P+FEGQTKT+LGN EV+ V+ +
Sbjct: 298 TYAAANELLKKEKVAISGEDLREGLTAVISVKIPQPQFEGQTKTKLGNSEVKGYVESLMN 357
Query: 436 EYLTEYLELHPDVXXXXXXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGKLADCSSTT 495
E L +LE +P + R+K L S+LPGKLADC
Sbjct: 358 EKLAVFLEENPKIAKDIIGKSIEAARAREAARKARELTRRKGALDISNLPGKLADCQERD 417
Query: 496 PEESEIFIVEGDSAGGSAKQGRDRRFQVIINPLQESI 532
P E+++VEGDSAGGSAKQGRDR+FQ I+ PL+ I
Sbjct: 418 PALCELYLVEGDSAGGSAKQGRDRKFQAIL-PLKGKI 453
>UNIPROTKB|Q8A277 [details] [associations]
symbol:gyrB "DNA gyrase subunit B" species:226186
"Bacteroides thetaiotaomicron VPI-5482" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IBA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IBA]
[GO:0006265 "DNA topological change" evidence=IBA] [GO:0007059
"chromosome segregation" evidence=IBA] [GO:0009295 "nucleoid"
evidence=IBA] HAMAP:MF_01898 InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
GO:GO:0007059 GO:GO:0006261 Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 EMBL:AE015928 GenomeReviews:AE015928_GR
GO:GO:0009295 GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719 KO:K02470
Gene3D:3.40.50.670 TIGRFAMs:TIGR01059 OMA:IFETTEF
ProtClustDB:PRK05644 HOGENOM:HOG000075154 HSSP:P06982
RefSeq:NP_812341.1 ProteinModelPortal:Q8A277 GeneID:1074051
KEGG:bth:BT_3429 PATRIC:21061865
BioCyc:BTHE226186:GJXV-3494-MONOMER Uniprot:Q8A277
Length = 653
Score = 951 (339.8 bits), Expect = 1.2e-95, P = 1.2e-95
Identities = 203/465 (43%), Positives = 284/465 (61%)
Query: 72 PVSKTYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIE 131
P + +Y ++ IQVLEGLEAVRKRPAMYIG +GLHHLVYEI+DN++DEA AGY +IE
Sbjct: 8 PNNGSYSADSIQVLEGLEAVRKRPAMYIGDISIKGLHHLVYEIVDNSIDEALAGYCDHIE 67
Query: 132 VALLADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAXXXXXXXXXXXXXXXXXXXX 191
V + DNS++V DNGRGIP+D H KSALE +TVLHA
Sbjct: 68 VTINEDNSITVQDNGRGIPVDYHEKEKKSALEVAMTVLHAGGKFDKGSYKVSGGLHGVGM 127
Query: 192 XXXXXNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQ 251
NALS + V+R+G Y Q+Y GKP+ + V V D GTR +FWPD
Sbjct: 128 SCV--NALSTHMTTQVFRNGKIYQQEYEIGKPLYS----VKEVGVSDITGTRQQFWPDDT 181
Query: 252 VFTTAIQFDHNTIAGRIRELAFLNPKLTIAL--RKEDSDPEKNQYNEYFFAG-GLEEYVQ 308
+FT + +D+ +A R+RELA+LN L I+L R+ ++ + + +E F++ GL E+V+
Sbjct: 182 IFTETV-YDYKILASRLRELAYLNAGLRISLTDRRVVNEEDGSFKSEVFYSEEGLREFVR 240
Query: 309 WLNTDKKPL-HDVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVK 367
++ + ++ L +DV+ + GI I++A+ + + +S+ + Y N+I TI+GGTH+ G +
Sbjct: 241 FIESSREHLINDVIYLNSEKQGIPIEIAIMY-NTGFSENVHSYVNNINTIEGGTHLAGFR 299
Query: 368 ASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVR 427
+LTRTL + SK ++ + +SG+ REGLT +ISV+V P+FEGQTKT+LGN EV
Sbjct: 300 RALTRTLKKYAEDSKMLEKVKVEISGDDFREGLTAVISVKVAEPQFEGQTKTKLGNNEVM 359
Query: 428 KVVDQSVQEYLTEYLELHPDVXXXXXXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGK 487
VDQ+V E L YLE HP V++KS + LPGK
Sbjct: 360 GAVDQAVGEVLAYYLEEHPKEAKTIVDKVILAATARHAARKAREMVQRKSPMSGGGLPGK 419
Query: 488 LADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQVIINPLQESI 532
LADCS P + E+F+VEGDSAGG+AKQGR+R FQ I+ PL+ I
Sbjct: 420 LADCSDKDPSKCELFLVEGDSAGGTAKQGRNRMFQAIL-PLRGKI 463
>UNIPROTKB|O67137 [details] [associations]
symbol:gyrB "DNA gyrase subunit B" species:224324 "Aquifex
aeolicus VF5" [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
HAMAP:MF_01898 InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
GO:GO:0007059 GO:GO:0006261 Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 GO:GO:0009295 EMBL:AE000657
GenomeReviews:AE000657_GR GO:GO:0006265 GO:GO:0003918
SUPFAM:SSF56719 eggNOG:COG0187 HOGENOM:HOG000075155 KO:K02470
Gene3D:3.40.50.670 TIGRFAMs:TIGR01059 PROSITE:PS50880 PIR:F70388
RefSeq:NP_213700.1 ProteinModelPortal:O67137 SMR:O67137
PRIDE:O67137 GeneID:1193771 KEGG:aae:aq_1026 PATRIC:20959360
OMA:IFETTEF ProtClustDB:PRK14939 BioCyc:AAEO224324:GJBH-733-MONOMER
Uniprot:O67137
Length = 792
Score = 943 (337.0 bits), Expect = 8.7e-95, P = 8.7e-95
Identities = 202/466 (43%), Positives = 285/466 (61%)
Query: 69 KENPVSKTYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYAS 128
+++ + Y +E I+ + GLE VR RPAMYIG G RGLHHL++EILDNAVDEA AGYA
Sbjct: 4 RQSQTPQEYTAEAIKAVSGLEHVRLRPAMYIGDIGERGLHHLIWEILDNAVDEAVAGYAR 63
Query: 129 NIEVALLADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAXXXXXXXXXXXXXXXXX 188
NI V + DNSV+V D+GRGIP+D+HP T K A+E V T+L A
Sbjct: 64 NISVTIHRDNSVTVEDDGRGIPVDIHPETGKPAVEMVFTMLGAGGKFEKKVYTYSGGLHG 123
Query: 189 XXXXXXXXNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWP 248
NALSE L V V+RDG Y + RG+ V L HV+ ++K R GT++ F P
Sbjct: 124 VGASVV--NALSEWLIVEVYRDGKIYRMAFKRGEVVEPL--HVVG-ETKKR-GTKVSFKP 177
Query: 249 DKQVF-TTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYV 307
D ++F TT I+FD + R+RELA+LNP++ L +D ++ Y F G+EE V
Sbjct: 178 DPEIFETTEIKFD--IVEKRVRELAYLNPEVKFEL----TDERLGKHLIYKFDRGIEELV 231
Query: 308 QWLNTDKKPLH-DVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGV 366
++LN K+PL D++ + + +G+ +D+A Q+ D Y + + + N+I+T++GGTH+ G
Sbjct: 232 KYLNEGKEPLFKDIIRIQGEKEGVIVDIAFQYVKD-YKERIESFVNNIKTVEGGTHVTGF 290
Query: 367 KASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEV 426
++ L++ + + + K K+ S +GE VREGLT +++ +VPNP+FEGQTKT+LGN V
Sbjct: 291 RSGLSKAVIRMAQGLKLAKELKKSFTGEDVREGLTAVVACKVPNPQFEGQTKTKLGNQNV 350
Query: 427 RKVVDQSVQEYLTEYLELHPDVXXXXXXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPG 486
+++V+ ++LT Y E DV VR+KS L LPG
Sbjct: 351 KQIVESITYDFLTSYFEKKRDVLKAIVEKAIEAALAREAAKKAKELVRRKSPLEEGVLPG 410
Query: 487 KLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQVIINPLQESI 532
KLADCS T P + EIF+VEGDSAGGSAKQ RDRR+Q I+ PL+ I
Sbjct: 411 KLADCSETDPSKCEIFLVEGDSAGGSAKQARDRRYQAIL-PLRGKI 455
>UNIPROTKB|Q8FA30 [details] [associations]
symbol:gyrB "DNA gyrase subunit B" species:189518
"Leptospira interrogans serovar Lai str. 56601" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IBA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IBA]
[GO:0006265 "DNA topological change" evidence=IBA] [GO:0007059
"chromosome segregation" evidence=IBA] [GO:0009295 "nucleoid"
evidence=IBA] HAMAP:MF_01898 InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
GO:GO:0007059 GO:GO:0006261 Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 GO:GO:0009295 GO:GO:0006265 GO:GO:0003918
SUPFAM:SSF56719 HOGENOM:HOG000075155 KO:K02470 Gene3D:3.40.50.670
TIGRFAMs:TIGR01059 OMA:IFETTEF ProtClustDB:PRK05644 EMBL:AE010300
GenomeReviews:AE010300_GR HSSP:P06982 RefSeq:NP_710186.1
ProteinModelPortal:Q8FA30 GeneID:1149348 KEGG:lil:LA_0005
PATRIC:22380849 BioCyc:LINT189518:GJBB-5-MONOMER Uniprot:Q8FA30
Length = 639
Score = 929 (332.1 bits), Expect = 2.7e-93, P = 2.7e-93
Identities = 192/458 (41%), Positives = 276/458 (60%)
Query: 76 TYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALL 135
+Y + QI++LEGLEAVRKRP MYIG+ GLH +VYE++DN+VDEA AG+ + I++++L
Sbjct: 7 SYSAGQIKILEGLEAVRKRPGMYIGTQDETGLHKMVYEVVDNSVDEAMAGHCTEIKISIL 66
Query: 136 ADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAXXXXXXXXXXXXXXXXXXXXXXXX 195
DN V V DNGRGIP+D+HP S +E V+T+LHA
Sbjct: 67 PDNIVEVKDNGRGIPVDIHPDKKISTIEVVMTILHAGGKFENDAYKVSGGLHGVGVSVV- 125
Query: 196 XNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTT 255
NALSE LEV V + G Y QKY +G PV+++ + DS +R GT +RF PD +FTT
Sbjct: 126 -NALSEYLEVEVHQKGKVYTQKYEKGVPVSSVQ---IQGDSSER-GTIVRFKPDATIFTT 180
Query: 256 AIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKK 315
+ F + ++ R RELAFLN L + + E NE+ F+GG+ +V+ +N +K
Sbjct: 181 -VDFQFDVLSARFRELAFLNKGLVLVVEDHRRGKENILRNEFQFSGGIVSFVEHINENKH 239
Query: 316 PLHDVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLN 375
P+H V+ F ++ D + ++++Q+ S+ Y++ + + N+I GGTH+EG +A+LTRTLN
Sbjct: 240 PMHKVIHFERNKDDVLAEISIQY-SETYTENIFCFTNNINNNLGGTHLEGFRAALTRTLN 298
Query: 376 SLGKKSKTVKDKD-ISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSV 434
KK T+ K LSGE V+EGLT +IS+++P P+F QTK +L N E++ ++
Sbjct: 299 DFLKKDSTLSKKHPTGLSGEDVKEGLTAVISIKIPQPQFNSQTKEKLVNAEIKGIMQTLS 358
Query: 435 QEYLTEYLELHPDVXXXXXXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGKLADCSST 494
E LT + E +P++ R+K+VL LPGKLADCS
Sbjct: 359 SEGLTLFFEENPNITKKILEKCILSAKAREAARKARDLTRRKTVLEGGGLPGKLADCSEK 418
Query: 495 TPEESEIFIVEGDSAGGSAKQGRDRRFQVIINPLQESI 532
P SE+++VEGDSAGGSAKQGRDR Q I+ PL+ I
Sbjct: 419 DPAHSELYLVEGDSAGGSAKQGRDRNTQAIL-PLKGKI 455
>UNIPROTKB|P0C5C5 [details] [associations]
symbol:gyrB "DNA gyrase subunit B" species:1773
"Mycobacterium tuberculosis" [GO:0000287 "magnesium ion binding"
evidence=IDA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IDA] [GO:0005524 "ATP binding"
evidence=IDA] [GO:0005618 "cell wall" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0040007 "growth" evidence=IMP]
[GO:0046982 "protein heterodimerization activity" evidence=IPI]
HAMAP:MF_01898 InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005886 GO:GO:0005524 GO:GO:0005737
GO:GO:0040007 GO:GO:0005618 GO:GO:0005694 EMBL:AE000516
GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR GO:GO:0000287
EMBL:BX842572 Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0006265
GO:GO:0003918 SUPFAM:SSF56719 EMBL:L27512 eggNOG:COG0187 KO:K02470
Gene3D:3.40.50.670 TIGRFAMs:TIGR01059 PROSITE:PS50880 OMA:IFETTEF
ProtClustDB:PRK05644 PIR:S44198 RefSeq:NP_214519.1
RefSeq:NP_334414.1 RefSeq:YP_006513317.1 PDB:2ZJT PDB:3IG0 PDB:3M4I
PDBsum:2ZJT PDBsum:3IG0 PDBsum:3M4I ProteinModelPortal:P0C5C5
SMR:P0C5C5 PRIDE:P0C5C5 EnsemblBacteria:EBMYCT00000001058
EnsemblBacteria:EBMYCT00000070955 GeneID:13315978 GeneID:887081
GeneID:922435 KEGG:mtc:MT0005 KEGG:mtu:Rv0005 KEGG:mtv:RVBD_0005
PATRIC:18121734 TubercuList:Rv0005 HOGENOM:HOG000075154
BindingDB:P0C5C5 ChEMBL:CHEMBL3489 EvolutionaryTrace:P0C5C5
Uniprot:P0C5C5
Length = 675
Score = 506 (183.2 bits), Expect = 1.3e-92, Sum P(2) = 1.3e-92
Identities = 105/258 (40%), Positives = 150/258 (58%)
Query: 276 PKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITIDL 334
PK E + P K + + + GGL ++V+ +N K +H +V F G +++
Sbjct: 230 PKSASERAAESTAPHKVKSRTFHYPGGLVDFVKHINRTKNAIHSSIVDFSGKGTGHEVEI 289
Query: 335 ALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGE 394
A+QW + YS+++ +AN+I T +GGTH EG +++LT +N K K +KDKD +L+G+
Sbjct: 290 AMQW-NAGYSESVHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDRKLLKDKDPNLTGD 348
Query: 395 HVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVXXXXXX 454
+REGL +ISV+V P+FEGQTKT+LGN EV+ V + E LT + E +P
Sbjct: 349 DIREGLAAVISVKVSEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPTDAKVVVN 408
Query: 455 XXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAK 514
VR+KS LPGKLADC ST P +SE+++VEGDSAGGSAK
Sbjct: 409 KAVSSAQARIAARKARELVRRKSATDIGGLPGKLADCRSTDPRKSELYVVEGDSAGGSAK 468
Query: 515 QGRDRRFQVIINPLQESI 532
GRD FQ I+ PL+ I
Sbjct: 469 SGRDSMFQAIL-PLRGKI 485
Score = 436 (158.5 bits), Expect = 1.3e-92, Sum P(2) = 1.3e-92
Identities = 97/219 (44%), Positives = 128/219 (58%)
Query: 67 AFKENPVSKTYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGY 126
A ++ YG+ I +LEGLEAVRKRP MYIGSTG RGLHHL++E++DNAVDEA AGY
Sbjct: 2 AAQKKKAQDEYGAASITILEGLEAVRKRPGMYIGSTGERGLHHLIWEVVDNAVDEAMAGY 61
Query: 127 ASNIEVALLADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAXXXXXXXXXXXXXXX 186
A+ + V LL D V VAD+GRGIP+ H A+ ++ V+T LHA
Sbjct: 62 ATTVNVVLLEDGGVEVADDGRGIPVATH-ASGIPTVDVVMTQLHAGGKFDSDAYAISGGL 120
Query: 187 XXXXXXXXXXNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRF 246
NALS LEV + RDG E+ Q Y + +P+ +K + G+ +RF
Sbjct: 121 HGVGVSVV--NALSTRLEVEIKRDGYEWSQVYEKSEPLGLKQ----GAPTK-KTGSTVRF 173
Query: 247 WPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKE 285
W D VF T ++D T+A R++E+AFLN LTI L E
Sbjct: 174 WADPAVFETT-EYDFETVARRLQEMAFLNKGLTINLTDE 211
>UNIPROTKB|O08399 [details] [associations]
symbol:gyrB "DNA gyrase subunit B" species:243276
"Treponema pallidum subsp. pallidum str. Nichols" [GO:0005515
"protein binding" evidence=IPI] HAMAP:MF_01898 InterPro:IPR001241
InterPro:IPR002288 InterPro:IPR003594 InterPro:IPR011557
InterPro:IPR013506 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986 Pfam:PF02518
PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387 SMART:SM00433
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737
GO:GO:0005694 Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 EMBL:AE000520
GenomeReviews:AE000520_GR GO:GO:0006265 GO:GO:0003918
SUPFAM:SSF56719 eggNOG:COG0187 KO:K02470 Gene3D:3.40.50.670
TIGRFAMs:TIGR01059 PROSITE:PS50880 OMA:IFETTEF ProtClustDB:PRK05644
EMBL:U78094 PIR:H71254 RefSeq:NP_219443.1 ProteinModelPortal:O08399
IntAct:O08399 GeneID:2610807 KEGG:tpa:TP1006 PATRIC:20532137
Uniprot:O08399
Length = 637
Score = 922 (329.6 bits), Expect = 1.5e-92, P = 1.5e-92
Identities = 209/463 (45%), Positives = 273/463 (58%)
Query: 77 YGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLA 136
Y + I VLEGLEAVRKRP MYIGSTGP GLHHLVYE++DN +DEA AGY I V L
Sbjct: 5 YSASSITVLEGLEAVRKRPGMYIGSTGPNGLHHLVYEVVDNCIDEAMAGYCDRITVVLEQ 64
Query: 137 DNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAXXXXXXXXXXXXXXXXXXXXXXXXX 196
N V V DNGRGIP+D+HP SALE VLT LHA
Sbjct: 65 GNVVRVEDNGRGIPVDVHPHEGVSALEVVLTKLHAGGKFDKKSYKVSGGLHGVGVSVV-- 122
Query: 197 NALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSK---DRQGTRIRFWPDKQVF 253
NALS +EVTV+RDG EY+QK++ G P+ PV+ + +++GT IR+ D +F
Sbjct: 123 NALSLWVEVTVYRDGAEYYQKFNVGMPLA-------PVEKRGVSEKRGTIIRWQADPSIF 175
Query: 254 TTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTD 313
+ +D + + R+RELAFLN + I LR E K E+ F GG+ +V +LN
Sbjct: 176 KETVAYDFDVLLTRLRELAFLNSTVVIQLRDERLATAKQV--EFAFEGGIRHFVSYLNRG 233
Query: 314 K-----KPLHDVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKA 368
K +PL+ + G + DV +++ALQ+ D Y++ + + N I T +GGTH+EG K+
Sbjct: 234 KSVVPERPLY-IEGSKSDV---LVEVALQY-HDGYTENVQSFVNDINTREGGTHLEGFKS 288
Query: 369 SLTRTLNSLGKKS-KTVK--DKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPE 425
+LTR N KKS K K +++ L GE VR GLT ++SV++P P+FEGQTKT+LGN E
Sbjct: 289 ALTRVANDFLKKSPKLAKKIEREEKLVGEDVRAGLTVVLSVKIPEPQFEGQTKTKLGNSE 348
Query: 426 VRKVVDQSVQEYLTEYLELHPDVXXXXXXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLP 485
VR +VD V E LT Y E +P V R+KS + S LP
Sbjct: 349 VRGIVDSLVGERLTLYFEQNPGVLTKILEKSIAEAQARLAARRAKEAARRKSGMDSFGLP 408
Query: 486 GKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQVIINPL 528
GKLADCS P + E++IVEGDSAGGSAK+GRD + Q I+ PL
Sbjct: 409 GKLADCSLKDPAKCEVYIVEGDSAGGSAKKGRDSKTQAIL-PL 450
>TIGR_CMR|CJE_0003 [details] [associations]
symbol:CJE_0003 "DNA gyrase, B subunit" species:195099
"Campylobacter jejuni RM1221" [GO:0003918 "DNA topoisomerase type
II (ATP-hydrolyzing) activity" evidence=ISS] [GO:0006265 "DNA
topological change" evidence=ISS] [GO:0009330 "DNA topoisomerase
complex (ATP-hydrolyzing)" evidence=ISS] HAMAP:MF_01898
InterPro:IPR001241 InterPro:IPR002288 InterPro:IPR003594
InterPro:IPR011557 InterPro:IPR013506 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986
Pfam:PF02518 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0005737 GO:GO:0005694 GO:GO:0006261 EMBL:CP000025
GenomeReviews:CP000025_GR Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719
eggNOG:COG0187 HOGENOM:HOG000075155 KO:K02470 Gene3D:3.40.50.670
TIGRFAMs:TIGR01059 OMA:IFETTEF ProtClustDB:PRK14939
RefSeq:YP_178032.1 ProteinModelPortal:Q5HXF3 STRING:Q5HXF3
GeneID:3230659 KEGG:cjr:CJE0003 PATRIC:20041695
BioCyc:CJEJ195099:GJC0-3-MONOMER Uniprot:Q5HXF3
Length = 769
Score = 919 (328.6 bits), Expect = 3.0e-92, P = 3.0e-92
Identities = 191/460 (41%), Positives = 273/460 (59%)
Query: 73 VSKTYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEV 132
+ + YG+ I+VL+GLEAVRKRP MYIG T GLHH++YE++DN++DEA AG+ I+V
Sbjct: 1 MQENYGASNIKVLKGLEAVRKRPGMYIGDTNIGGLHHMIYEVVDNSIDEAMAGHCDTIDV 60
Query: 133 ALLADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAXXXXXXXXXXXXXXXXXXXXX 192
+ + S V+DNGRGIP+D+HP N L VLTVLHA
Sbjct: 61 EITTEGSCIVSDNGRGIPVDMHPTENMPTLTVVLTVLHAGGKFDKDTYKVSGGLHGVGVS 120
Query: 193 XXXXNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQV 252
NALS+ L TV R+G Y Q++S GK ++ + + GT I FWPD Q+
Sbjct: 121 VV--NALSKKLVATVERNGEIYRQEFSEGKVISEFGV----IGKSKKTGTTIEFWPDDQI 174
Query: 253 FTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNT 312
F +FD+ +A R RELA+LNPK+TI + D ++ + F GG+ ++V LN
Sbjct: 175 FEVT-EFDYEILAKRFRELAYLNPKITINFK----DNRVGKHESFHFEGGISQFVIDLNK 229
Query: 313 DKKPLHDVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTR 372
K+ L + F D + + +++AL + +D YS+ +L + N+I+T DGGTH G + LTR
Sbjct: 230 -KEALTKAIFFSVDEEDVNVEVALLY-NDTYSENLLSFVNNIKTPDGGTHEAGFRMGLTR 287
Query: 373 TLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQ 432
+++ + + + ++KD ++GE VREGL ++SV+VP P+FEGQTK +LG+ VR +V +
Sbjct: 288 VISNYIEANASAREKDNKITGEDVREGLIAVVSVKVPEPQFEGQTKGKLGSTYVRPIVSK 347
Query: 433 SVQEYLTEYLELHPDVXXXXXXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGKLADCS 492
+ EYLT+Y E +P R+K L +LPGKLADC
Sbjct: 348 ASFEYLTKYFEENPIEAKAIMNKVLMAARGREAAKKARELTRKKESLSVGTLPGKLADCQ 407
Query: 493 STTPEESEIFIVEGDSAGGSAKQGRDRRFQVIINPLQESI 532
S P ESEI++VEGDSAGGSAKQGR+R FQ I+ PL+ I
Sbjct: 408 SKDPSESEIYLVEGDSAGGSAKQGRERSFQAIL-PLRGKI 446
>UNIPROTKB|Q3KMH2 [details] [associations]
symbol:gyrB_1 "DNA gyrase subunit B" species:315277
"Chlamydia trachomatis A/HAR-13" [GO:0003918 "DNA topoisomerase
type II (ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
HAMAP:MF_01898 InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
GO:GO:0007059 GO:GO:0006261 Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 GO:GO:0009295 EMBL:CP000051
GenomeReviews:CP000051_GR GO:GO:0006265 GO:GO:0003918
SUPFAM:SSF56719 eggNOG:COG0187 HOGENOM:HOG000075155 KO:K02470
Gene3D:3.40.50.670 TIGRFAMs:TIGR01059 OMA:IFETTEF
ProtClustDB:PRK14939 RefSeq:YP_327998.1 ProteinModelPortal:Q3KMH2
STRING:Q3KMH2 GeneID:3687234 KEGG:cta:CTA_0208 PATRIC:32022282
BioCyc:CTRA315277:GI4C-250-MONOMER Uniprot:Q3KMH2
Length = 804
Score = 906 (324.0 bits), Expect = 7.3e-91, P = 7.3e-91
Identities = 203/470 (43%), Positives = 276/470 (58%)
Query: 75 KTYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVAL 134
K Y + I VLEGL+AVR+RP MYIG TG GLHHLVYE++DN++DEA AG+ + + V +
Sbjct: 6 KKYDASAITVLEGLQAVRERPGMYIGDTGVTGLHHLVYEVVDNSIDEAMAGFCTEVVVRI 65
Query: 135 LADNSVSVADNGRGIPIDLHPATNK------SALETVLTVLHAXXXXXXXXXXXXXXXXX 188
L D +S++DNGRGIPI +H + SALE VLTVLHA
Sbjct: 66 LEDGGISISDNGRGIPIQIHEKESAKQGREISALEVVLTVLHAGGKFDKDSYKVSGGLHG 125
Query: 189 XXXXXXXXNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWP 248
NALSE V++DG Y ++SRG P+TTL VL D++GT + F+P
Sbjct: 126 VGVSCV--NALSEKFIAKVFKDGQAYSMEFSRGAPLTTL--QVL--GPTDKRGTEVLFYP 179
Query: 249 DKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQ 308
D +F+T + FD + R+RELAFLN +TI ++D D ++ +F+ GG++ +V
Sbjct: 180 DPAIFSTCV-FDRAILMKRLRELAFLNRGVTIVF-EDDRDTGFDKV-VFFYEGGIQSFVS 236
Query: 309 WLNTDKK-----PLHDVVGFRKDVDG-ITIDLALQWCSDAYSDTMLGYANSIRTIDGGTH 362
+LN +K+ P++ + G R DG I + ALQW S YS+ + YAN+I T GGTH
Sbjct: 237 YLNQNKEILFPNPIY-MQGSRPGDDGDIEFEAALQWNS-GYSELIYSYANNIPTRQGGTH 294
Query: 363 IEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLG 422
+ G +LTR +NS K K +SL+GE ++EGL I+SV+VPNP+FEGQTK +LG
Sbjct: 295 LTGFSTALTRAVNSYIKAHNLSKSDKLSLTGEDIKEGLVAIVSVKVPNPQFEGQTKQKLG 354
Query: 423 NPEVRKVVDQSVQEYLTEYLELHPDVXXXXXXXXXXXXXXXXXXXXXXXXVRQKSVLRSS 482
N +V V Q E LT + E +P + +KS L S+
Sbjct: 355 NSDVGSVSQQISGEVLTTFFEENPQIAKTIVDKVFVAAQAREAAKRARELTLRKSALDSA 414
Query: 483 SLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQVIINPLQESI 532
LPGKL DC PE+ E++IVEGDSAGGSAKQGRDRRFQ I+ P++ I
Sbjct: 415 RLPGKLIDCLEKDPEKCEMYIVEGDSAGGSAKQGRDRRFQAIL-PIRGKI 463
>UNIPROTKB|P0AES6 [details] [associations]
symbol:gyrB species:83333 "Escherichia coli K-12"
[GO:0008094 "DNA-dependent ATPase activity" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IDA;IMP] [GO:0009330 "DNA
topoisomerase complex (ATP-hydrolyzing)" evidence=IDA] [GO:0006265
"DNA topological change" evidence=IEA;IMP] [GO:0005524 "ATP
binding" evidence=IEA;IDA] [GO:0042493 "response to drug"
evidence=IDA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IEA;IDA] [GO:0006351
"transcription, DNA-dependent" evidence=IMP] [GO:0005737
"cytoplasm" evidence=IEA;IDA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0009295 "nucleoid" evidence=IBA] [GO:0007059
"chromosome segregation" evidence=IBA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0046677 "response to antibiotic"
evidence=IEA] HAMAP:MF_01898 InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
GO:GO:0007059 GO:GO:0042493 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0046677
GO:GO:0006351 EMBL:L10328 Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 GO:GO:0009330 GO:GO:0009295 EMBL:X04341
GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719 PDB:3NUH PDBsum:3NUH
eggNOG:COG0187 HOGENOM:HOG000075155 KO:K02470 Gene3D:3.40.50.670
TIGRFAMs:TIGR01059 PROSITE:PS50880 OMA:IFETTEF ProtClustDB:PRK14939
EMBL:D87842 EMBL:M15548 PIR:D65172 RefSeq:YP_026241.1
RefSeq:YP_491736.1 PDB:1AJ6 PDB:1EI1 PDB:1KZN PDB:3G7E PDB:4DUH
PDBsum:1AJ6 PDBsum:1EI1 PDBsum:1KZN PDBsum:3G7E PDBsum:4DUH
ProteinModelPortal:P0AES6 SMR:P0AES6 DIP:DIP-48005N IntAct:P0AES6
PaxDb:P0AES6 PRIDE:P0AES6 EnsemblBacteria:EBESCT00000002623
EnsemblBacteria:EBESCT00000017095 GeneID:12930543 GeneID:948211
KEGG:ecj:Y75_p3474 KEGG:eco:b3699 PATRIC:32122895 EchoBASE:EB0419
EcoGene:EG10424 BioCyc:EcoCyc:EG10424-MONOMER
BioCyc:ECOL316407:JW5625-MONOMER BioCyc:MetaCyc:EG10424-MONOMER
BindingDB:P0AES6 ChEMBL:CHEMBL1826 DrugBank:DB00817
EvolutionaryTrace:P0AES6 Genevestigator:P0AES6 Uniprot:P0AES6
Length = 804
Score = 880 (314.8 bits), Expect = 4.1e-88, P = 4.1e-88
Identities = 185/462 (40%), Positives = 269/462 (58%)
Query: 73 VSKTYGSEQIQVLEGLEAVRKRPAMYIGSTGP-RGLHHLVYEILDNAVDEAQAGYASNIE 131
+S +Y S I+VL+GL+AVRKRP MYIG T GLHH+V+E++DNA+DEA AG+ I
Sbjct: 1 MSNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEII 60
Query: 132 VALLADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAXXXXXXXXXXXXXXXXXXXX 191
V + ADNSVSV D+GRGIP +HP SA E ++TVLHA
Sbjct: 61 VTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120
Query: 192 XXXXXNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQ 251
NALS+ LE+ + R+G + Q Y G P L ++ GT +RFWP +
Sbjct: 121 SVV--NALSQKLELVIQREGKIHRQIYEHGVPQAPLAV----TGETEKTGTMVRFWPSLE 174
Query: 252 VFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLN 311
FT +F++ +A R+REL+FLN ++I LR D + + + + GG++ +V++LN
Sbjct: 175 TFTNVTEFEYEILAKRLRELSFLNSGVSIRLR----DKRDGKEDHFHYEGGIKAFVEYLN 230
Query: 312 TDKKPLH-DVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASL 370
+K P+H ++ F + DGI +++ALQW +D + + + + N+I DGGTH+ G +A++
Sbjct: 231 KNKTPIHPNIFYFSTEKDGIGVEVALQW-NDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289
Query: 371 TRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVV 430
TRTLN+ K K +S +G+ REGL ++SV+VP+P+F QTK +L + EV+ V
Sbjct: 290 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349
Query: 431 DQSVQEYLTEYLELHPDVXXXXXXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGKLAD 490
+Q + E L EYL +P R+K L + LPGKLAD
Sbjct: 350 EQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLAD 409
Query: 491 CSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQVIINPLQESI 532
C P SE+++VEGDSAGGSAKQGR+R+ Q I+ PL+ I
Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAIL-PLKGKI 450
>UNIPROTKB|Q9KVX3 [details] [associations]
symbol:gyrB "DNA gyrase subunit B" species:243277 "Vibrio
cholerae O1 biovar El Tor str. N16961" [GO:0003916 "DNA
topoisomerase activity" evidence=ISS] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=ISS]
[GO:0006265 "DNA topological change" evidence=ISS] [GO:0009330 "DNA
topoisomerase complex (ATP-hydrolyzing)" evidence=ISS]
HAMAP:MF_01898 InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
EMBL:AE003852 GenomeReviews:AE003852_GR Gene3D:3.30.565.10
SUPFAM:SSF55874 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0009330 GO:GO:0006265
GO:GO:0003918 SUPFAM:SSF56719 eggNOG:COG0187 KO:K02470
Gene3D:3.40.50.670 TIGRFAMs:TIGR01059 PROSITE:PS50880 OMA:IFETTEF
ProtClustDB:PRK14939 PIR:H82376 RefSeq:NP_062599.1
ProteinModelPortal:Q9KVX3 SMR:Q9KVX3 PRIDE:Q9KVX3 DNASU:2615137
GeneID:2615137 KEGG:vch:VC0015 PATRIC:20079078 Uniprot:Q9KVX3
Length = 805
Score = 876 (313.4 bits), Expect = 1.1e-87, P = 1.1e-87
Identities = 187/463 (40%), Positives = 272/463 (58%)
Query: 73 VSKTYGSEQIQVLEGLEAVRKRPAMYIGSTGP-RGLHHLVYEILDNAVDEAQAGYASNIE 131
+S Y S I+VL+GL+AVRKRP MYIG T GLHH+V+E++DN++DEA AGY +I
Sbjct: 1 MSNNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCKDIV 60
Query: 132 VALLADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAXXXXXXXXXXXXXXXXXXXX 191
V + DNSVSV+D+GRGIP ++HP SA E ++TVLHA
Sbjct: 61 VTIHEDNSVSVSDDGRGIPTEMHPEEKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120
Query: 192 XXXXXNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQ 251
NALSE + +T++R G + Q Y G P L V +R GT +RFWP Q
Sbjct: 121 SVV--NALSEKVLLTIYRGGKIHSQTYHHGVPQAPLAV----VGETERTGTTVRFWPSAQ 174
Query: 252 VFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLN 311
FT I+F ++ +A R+REL+FLN ++I L E + +K+ + + GG++ +V LN
Sbjct: 175 TFTN-IEFHYDILAKRLRELSFLNSGVSIKLTDEREEDKKDHF---MYEGGIQAFVTHLN 230
Query: 312 TDKKPLHD-VVGFRKD-VDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKAS 369
+K P+H+ V F ++ DGI++++A+QW +D + + + + N+I DGGTH+ G + +
Sbjct: 231 RNKTPIHEKVFHFNQEREDGISVEVAMQW-NDGFQENIYCFTNNIPQRDGGTHLAGFRGA 289
Query: 370 LTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKV 429
LTRTLN+ K K + SG+ REGLT ++SV+VP+P+F QTK +L + EV+
Sbjct: 290 LTRTLNNYMDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSA 349
Query: 430 VDQSVQEYLTEYLELHPDVXXXXXXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGKLA 489
V+ ++ E L ++L +P R+K L + LPGKLA
Sbjct: 350 VESAMNEKLADFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLA 409
Query: 490 DCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQVIINPLQESI 532
DC P SE++IVEGDSAGGSAKQGR+R+ Q I+ PL+ I
Sbjct: 410 DCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAIL-PLKGKI 451
>TIGR_CMR|VC_0015 [details] [associations]
symbol:VC_0015 "DNA gyrase, subunit B" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0003916 "DNA topoisomerase activity"
evidence=ISS] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=ISS] [GO:0006265 "DNA
topological change" evidence=ISS] [GO:0009330 "DNA topoisomerase
complex (ATP-hydrolyzing)" evidence=ISS] HAMAP:MF_01898
InterPro:IPR001241 InterPro:IPR002288 InterPro:IPR003594
InterPro:IPR011557 InterPro:IPR013506 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986
Pfam:PF02518 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0005737 GO:GO:0005694 EMBL:AE003852 GenomeReviews:AE003852_GR
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0009330
GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719 eggNOG:COG0187
KO:K02470 Gene3D:3.40.50.670 TIGRFAMs:TIGR01059 PROSITE:PS50880
OMA:IFETTEF ProtClustDB:PRK14939 PIR:H82376 RefSeq:NP_062599.1
ProteinModelPortal:Q9KVX3 SMR:Q9KVX3 PRIDE:Q9KVX3 DNASU:2615137
GeneID:2615137 KEGG:vch:VC0015 PATRIC:20079078 Uniprot:Q9KVX3
Length = 805
Score = 876 (313.4 bits), Expect = 1.1e-87, P = 1.1e-87
Identities = 187/463 (40%), Positives = 272/463 (58%)
Query: 73 VSKTYGSEQIQVLEGLEAVRKRPAMYIGSTGP-RGLHHLVYEILDNAVDEAQAGYASNIE 131
+S Y S I+VL+GL+AVRKRP MYIG T GLHH+V+E++DN++DEA AGY +I
Sbjct: 1 MSNNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCKDIV 60
Query: 132 VALLADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAXXXXXXXXXXXXXXXXXXXX 191
V + DNSVSV+D+GRGIP ++HP SA E ++TVLHA
Sbjct: 61 VTIHEDNSVSVSDDGRGIPTEMHPEEKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120
Query: 192 XXXXXNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQ 251
NALSE + +T++R G + Q Y G P L V +R GT +RFWP Q
Sbjct: 121 SVV--NALSEKVLLTIYRGGKIHSQTYHHGVPQAPLAV----VGETERTGTTVRFWPSAQ 174
Query: 252 VFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLN 311
FT I+F ++ +A R+REL+FLN ++I L E + +K+ + + GG++ +V LN
Sbjct: 175 TFTN-IEFHYDILAKRLRELSFLNSGVSIKLTDEREEDKKDHF---MYEGGIQAFVTHLN 230
Query: 312 TDKKPLHD-VVGFRKD-VDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKAS 369
+K P+H+ V F ++ DGI++++A+QW +D + + + + N+I DGGTH+ G + +
Sbjct: 231 RNKTPIHEKVFHFNQEREDGISVEVAMQW-NDGFQENIYCFTNNIPQRDGGTHLAGFRGA 289
Query: 370 LTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKV 429
LTRTLN+ K K + SG+ REGLT ++SV+VP+P+F QTK +L + EV+
Sbjct: 290 LTRTLNNYMDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSA 349
Query: 430 VDQSVQEYLTEYLELHPDVXXXXXXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGKLA 489
V+ ++ E L ++L +P R+K L + LPGKLA
Sbjct: 350 VESAMNEKLADFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLA 409
Query: 490 DCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQVIINPLQESI 532
DC P SE++IVEGDSAGGSAKQGR+R+ Q I+ PL+ I
Sbjct: 410 DCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAIL-PLKGKI 451
>TIGR_CMR|SPO_0155 [details] [associations]
symbol:SPO_0155 "DNA gyrase, B subunit" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0003916 "DNA topoisomerase activity"
evidence=ISS] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=ISS] [GO:0006265 "DNA
topological change" evidence=ISS] [GO:0009330 "DNA topoisomerase
complex (ATP-hydrolyzing)" evidence=ISS] HAMAP:MF_01898
InterPro:IPR001241 InterPro:IPR002288 InterPro:IPR003594
InterPro:IPR011557 InterPro:IPR013506 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986
Pfam:PF02518 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0005737 GO:GO:0005694 EMBL:CP000031 GenomeReviews:CP000031_GR
GO:GO:0006261 Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0006265
GO:GO:0003918 SUPFAM:SSF56719 HOGENOM:HOG000075155 KO:K02470
Gene3D:3.40.50.670 TIGRFAMs:TIGR01059 OMA:IFETTEF
ProtClustDB:PRK14939 RefSeq:YP_165427.1 ProteinModelPortal:Q5LWU8
SMR:Q5LWU8 GeneID:3194940 KEGG:sil:SPO0155 PATRIC:23373557
Uniprot:Q5LWU8
Length = 805
Score = 873 (312.4 bits), Expect = 2.3e-87, P = 2.3e-87
Identities = 188/465 (40%), Positives = 276/465 (59%)
Query: 70 ENPVSKTYGSEQIQVLEGLEAVRKRPAMYIGSTGP-RGLHHLVYEILDNAVDEAQAGYAS 128
E P ++ YG++ I+VL+GLEAVRKRP MYIG T GLHH+VYE++DN +DEA AG+A
Sbjct: 5 EQPGNE-YGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAGHAD 63
Query: 129 NIEVALLADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAXXXXXXXXXXXXXXXXX 188
++ V + AD+SVSVADNGRGIP+D+H SA E ++T LHA
Sbjct: 64 HVTVKIHADSSVSVADNGRGIPVDIHAEEGVSAAEVIMTQLHAGGKFDSNSYKVSGGLHG 123
Query: 189 XXXXXXXXNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWP 248
NALS+ LE+ +WR G E+ ++ RG V L V+ + DR GT +RF
Sbjct: 124 VGVSVV--NALSDWLELRIWRHGKEHVARFERGDTVEHL--RVVG-ECGDRTGTEVRFLA 178
Query: 249 DKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQ 308
F+ + + T+ R+RELAFLN + I L D P + E F+ GG+ E+V+
Sbjct: 179 STTTFSN-LDYVFETLEKRLRELAFLNSGVRIILI--DERPAERIETELFYEGGVREFVK 235
Query: 309 WLNTDKKPLHDV-VGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVK 367
+L+ K P+ + F+ + D I +++A+ W +D+Y +T+L + N+I DGGTH+ G +
Sbjct: 236 YLDRSKSPVMPAPIYFKGERDDIGVEIAMWW-NDSYHETVLPFTNNIPQRDGGTHVAGFR 294
Query: 368 ASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVR 427
+LTRT+N+ + S K + I+ +G+ REGLTC++SV+VP+P+F QTK +L + EVR
Sbjct: 295 GALTRTINNYAQSSGIAKREKINFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVR 354
Query: 428 KVVDQSVQEYLTEYLELHPDVXXXXXXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGK 487
V+ V E L E+ E +P+V R+K+ + + L GK
Sbjct: 355 PAVENLVNEKLAEWFEENPNVAKQIVGKIIEAALAREAARKARELTRRKTAMDVNYLAGK 414
Query: 488 LADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQVIINPLQESI 532
L DCS P ++E+F+VEGDSAGGSA+ GRDRR Q ++ PL+ I
Sbjct: 415 LKDCSEKDPSKTEVFLVEGDSAGGSAQTGRDRRTQAVL-PLRGKI 458
>TIGR_CMR|BA_3657 [details] [associations]
symbol:BA_3657 "DNA topoisomerase IV, B subunit"
species:198094 "Bacillus anthracis str. Ames" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=ISS]
[GO:0006260 "DNA replication" evidence=ISS] [GO:0006265 "DNA
topological change" evidence=ISS] [GO:0009340 "DNA topoisomerase IV
complex" evidence=ISS] InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR005740 InterPro:IPR011557
InterPro:IPR013506 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986 Pfam:PF02518
PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387 SMART:SM00433
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524 GO:GO:0005694
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0006265
GO:GO:0003918 SUPFAM:SSF56719 Gene3D:3.40.50.670 TIGRFAMs:TIGR01059
HOGENOM:HOG000075154 KO:K02622 OMA:TDGTGLH ProtClustDB:PRK05559
TIGRFAMs:TIGR01058 HSSP:P06982 RefSeq:NP_845922.1
RefSeq:YP_020292.2 RefSeq:YP_029649.1 ProteinModelPortal:Q81Y98
IntAct:Q81Y98 DNASU:1085976 EnsemblBacteria:EBBACT00000013021
EnsemblBacteria:EBBACT00000015630 EnsemblBacteria:EBBACT00000022573
GeneID:1085976 GeneID:2818281 GeneID:2850873 KEGG:ban:BA_3657
KEGG:bar:GBAA_3657 KEGG:bat:BAS3392
BioCyc:BANT260799:GJAJ-3454-MONOMER
BioCyc:BANT261594:GJ7F-3563-MONOMER Uniprot:Q81Y98
Length = 654
Score = 868 (310.6 bits), Expect = 7.7e-87, P = 7.7e-87
Identities = 193/461 (41%), Positives = 264/461 (57%)
Query: 77 YGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLA 136
Y + IQVLEGLEAVRKRP MYIGST RGLHHLVYEI+DN+VDEA AG+ I V +
Sbjct: 8 YNEDAIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNSVDEALAGFGDEISVVIHK 67
Query: 137 DNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAXXXXXXXXXXXXXXXXXXXXXXXXX 196
DNS+SV D GRG+P +H K E +LTVLHA
Sbjct: 68 DNSISVIDKGRGMPTGMHKL-GKPTPEVILTVLHAGGKFGQGGYKTSGGLHGVGASVV-- 124
Query: 197 NALSESLEVTVWRDGMEYHQKYSRGK-PVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTT 255
NALSE L VT+ RDG Y Q++ G PVTTL + GT + F PD +F+T
Sbjct: 125 NALSEWLVVTIKRDGNIYEQRFENGGVPVTTLE----KIGKTKESGTTMHFKPDTTIFST 180
Query: 256 AIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKK 315
+++ T+ R+RE AFL + I+++ E +D E + + + G+E +V +LN +K
Sbjct: 181 T-NYNYETLCERLRESAFLLKGMKISIKDERNDLE----DVFHYETGIEAFVSYLNEEKD 235
Query: 316 PLHDVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLN 375
+H VV F + +GI +LA Q+ +D YS+ +L + N++RT DGGTH G K ++TR N
Sbjct: 236 SIHPVVYFTGEQNGIEAELAFQF-NDGYSENILSFVNNVRTKDGGTHEAGFKTAMTRVFN 294
Query: 376 SLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNP--EFEGQTKTRLGNPEVRKVVDQS 433
+K +K+KD +L G +REG+ I+SVRVP +FEGQTK +LG E R +D
Sbjct: 295 EYARKVALLKEKDKNLEGTDIREGVAAIVSVRVPEEVLQFEGQTKGKLGTSEARSSIDAI 354
Query: 434 VQEYLTEYLELHPDVXXXXXXXXXXXXXXXXXXXXXXXXVR--QKSVLRSSSLPGKLADC 491
V E+L +LE +PDV R +K +L GKL
Sbjct: 355 VSEHLAYFLEENPDVATLLVRKAIKAAQAREAARKAREEARTGKKKKKSEGTLSGKLTPA 414
Query: 492 SSTTPEESEIFIVEGDSAGGSAKQGRDRRFQVIINPLQESI 532
S P+++E+++VEGDSAGGSAKQGRDRRFQ ++ PL+ +
Sbjct: 415 QSRNPQKNELYLVEGDSAGGSAKQGRDRRFQAVL-PLRGKV 454
>UNIPROTKB|Q89W70 [details] [associations]
symbol:gyrB "DNA gyrase subunit B" species:224911
"Bradyrhizobium japonicum USDA 110" [GO:0003918 "DNA topoisomerase
type II (ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
HAMAP:MF_01898 InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
GO:GO:0007059 GO:GO:0006261 Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 GO:GO:0009295 GO:GO:0006265 EMBL:BA000040
GenomeReviews:BA000040_GR GO:GO:0003918 SUPFAM:SSF56719
HOGENOM:HOG000075155 KO:K02470 Gene3D:3.40.50.670
TIGRFAMs:TIGR01059 OMA:IFETTEF ProtClustDB:PRK14939 HSSP:P06982
RefSeq:NP_767463.1 ProteinModelPortal:Q89W70 SMR:Q89W70
GeneID:1047796 KEGG:bja:bll0823 PATRIC:21185152
BioCyc:BJAP224911:GJEJ-831-MONOMER Uniprot:Q89W70
Length = 811
Score = 867 (310.3 bits), Expect = 9.9e-87, P = 9.9e-87
Identities = 194/470 (41%), Positives = 274/470 (58%)
Query: 65 TEAFKENPVSKTYGSEQIQVLEGLEAVRKRPAMYIGSTGP-RGLHHLVYEILDNAVDEAQ 123
T A E YG+E I+VL+GL+AVRKRP MYIG T GLHH+VYE++DNA+DEA
Sbjct: 8 TPAENEPSNPSDYGAESIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEAL 67
Query: 124 AGYASNIEVALLADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAXXXXXXXXXXXX 183
AG+A+ ++V L ADNSV+V D+GRGIP+D+H SA E ++T LHA
Sbjct: 68 AGHATRVDVVLNADNSVTVRDDGRGIPVDIHKGEGISAAEVIMTQLHAGGKFDQNSYKVS 127
Query: 184 XXXXXXXXXXXXXNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTR 243
NALS L + +WRD E++ +++ G V L V+ D+ ++GT
Sbjct: 128 GGLHGVGVSVV--NALSSKLGLRIWRDNKEHYIEFAHGDAVAPL---VVVGDAPGKRGTE 182
Query: 244 IRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGL 303
+ F F I++D T+ R+RELAFLN + IAL EK + E ++GG+
Sbjct: 183 VTFLASPDTFKN-IEYDFATLEHRLRELAFLNSGVNIALSDMRHAVEKRE--EMHYSGGV 239
Query: 304 EEYVQWLNTDKKPLHDV-VGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTH 362
EE+V++L+ +KK + + R + +GI ++ AL W +D+Y + +L + N+I DGGTH
Sbjct: 240 EEFVKYLDRNKKAIVPAPIMVRAEANGIGVEAALWW-NDSYHENVLCFTNNIPQRDGGTH 298
Query: 363 IEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLG 422
+ G + +LTR +N G K + I+L+G+ REGLT ++SV+VP+P+F QTK +L
Sbjct: 299 LAGFRGALTRQVN--GYAEANAKKEKIALTGDDCREGLTAVLSVKVPDPKFSSQTKDKLV 356
Query: 423 NPEVRKVVDQSVQEYLTEYLELHPDVXXXXXXXXXXXXXXXXXXXXXXXXVRQKSVLRSS 482
+ EVR VV+ + E L + E HP R KS L S
Sbjct: 357 SSEVRPVVENVLNEALQAWFEEHPSEAKMIVGKVIQAAAAREAARKARELTR-KSPLSVS 415
Query: 483 SLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQVIINPLQESI 532
SLPGKLADC P +SE+FIVEGDSAGGSAKQGR+R FQ ++ PL+ I
Sbjct: 416 SLPGKLADCQEKDPAKSELFIVEGDSAGGSAKQGRNREFQAVL-PLRGKI 464
>TIGR_CMR|CBU_0004 [details] [associations]
symbol:CBU_0004 "DNA gyrase, B subunit" species:227377
"Coxiella burnetii RSA 493" [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] [GO:0009330 "DNA topoisomerase complex
(ATP-hydrolyzing)" evidence=ISS] HAMAP:MF_01898 InterPro:IPR001241
InterPro:IPR002288 InterPro:IPR003594 InterPro:IPR011557
InterPro:IPR013506 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986 Pfam:PF02518
PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387 SMART:SM00433
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737
GO:GO:0005694 GO:GO:0006261 EMBL:AE016828 GenomeReviews:AE016828_GR
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0006265
GO:GO:0003918 SUPFAM:SSF56719 HOGENOM:HOG000075155 KO:K02470
Gene3D:3.40.50.670 TIGRFAMs:TIGR01059 OMA:IFETTEF
ProtClustDB:PRK14939 RefSeq:NP_819060.2 ProteinModelPortal:Q83FD5
PRIDE:Q83FD5 GeneID:1207924 KEGG:cbu:CBU_0004 PATRIC:17928685
BioCyc:CBUR227377:GJ7S-5-MONOMER Uniprot:Q83FD5
Length = 810
Score = 867 (310.3 bits), Expect = 9.9e-87, P = 9.9e-87
Identities = 188/458 (41%), Positives = 269/458 (58%)
Query: 77 YGSEQIQVLEGLEAVRKRPAMYIGSTGP-RGLHHLVYEILDNAVDEAQAGYASNIEVALL 135
Y S I+VL+GL+AVRKRP MYIG T GLHH+V+E++DN++DEA AG+ S+I V +
Sbjct: 11 YDSSTIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGFCSHIWVTIH 70
Query: 136 ADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAXXXXXXXXXXXXXXXXXXXXXXXX 195
AD SVSV DNGRGIP D+HP +SA E ++TVLHA
Sbjct: 71 ADGSVSVRDNGRGIPTDIHPEEGRSAAEVIMTVLHAGGKFDKNAYKVSGGLHGVGISVV- 129
Query: 196 XNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTT 255
NALSE L +T+ ++G Y Q Y G P L D+ GT IRF P +F+
Sbjct: 130 -NALSEELYMTIRQNGNVYTQTYKMGVPQAPLAV----TGKSDKTGTEIRFKPSNAIFSN 184
Query: 256 AIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKK 315
+F ++ +A R+RELAFLN + +R E +D + + + + GG++ +V+ LN K
Sbjct: 185 T-EFHYDILAKRLRELAFLN----LGVRIELTDERSGRGDIFEYEGGIKAFVEHLNKKKT 239
Query: 316 PLH-DVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTL 374
P+H DV F + + I +++A+QW +D + +T+ + N+I DGGTH+ G +A+LTRTL
Sbjct: 240 PIHSDVFHFSTEKNDIVVEVAMQW-NDGFQETIFCFTNNIPQNDGGTHLAGFRAALTRTL 298
Query: 375 NSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSV 434
N+ + K +++SG+ REGLT ++SV+VP+P+F QTK +L + EV+ VV+ +V
Sbjct: 299 NNYIEGEALAKKSKVTISGDDTREGLTVVLSVKVPDPKFSSQTKDKLVSSEVKPVVESTV 358
Query: 435 QEYLTEYLELHPDVXXXXXXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGKLADCSST 494
+ L +YL +P R+K+VL LPGKLADC
Sbjct: 359 AKQLHDYLLENPKQARIIAMKVIDAARAREAARKARDMTRRKNVLDLGGLPGKLADCQEK 418
Query: 495 TPEESEIFIVEGDSAGGSAKQGRDRRFQVIINPLQESI 532
P E+F+VEGDSAGGSAKQ RDRR+Q I+ PL+ I
Sbjct: 419 DPALCELFLVEGDSAGGSAKQARDRRYQAIL-PLKGKI 455
>UNIPROTKB|Q59192 [details] [associations]
symbol:parE "DNA topoisomerase 4 subunit B" species:224308
"Bacillus subtilis subsp. subtilis str. 168" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IBA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IBA]
[GO:0006265 "DNA topological change" evidence=IBA] [GO:0007059
"chromosome segregation" evidence=IBA] [GO:0009295 "nucleoid"
evidence=IBA] InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR005740 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005694 GO:GO:0007059
GO:GO:0006261 EMBL:AL009126 GenomeReviews:AL009126_GR
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0009295
GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719 eggNOG:COG0187
Gene3D:3.40.50.670 PROSITE:PS50880 HOGENOM:HOG000075154 EMBL:Z73234
EMBL:AF024713 PIR:C69637 RefSeq:NP_389691.2
ProteinModelPortal:Q59192 SMR:Q59192
EnsemblBacteria:EBBACT00000000468 GeneID:936151 KEGG:bsu:BSU18090
PATRIC:18975449 GenoList:BSU18090 KO:K02622 OMA:TDGTGLH
ProtClustDB:PRK05559 BioCyc:BSUB:BSU18090-MONOMER BindingDB:Q59192
ChEMBL:CHEMBL3485 HAMAP:MF_00939 TIGRFAMs:TIGR01058 Uniprot:Q59192
Length = 655
Score = 846 (302.9 bits), Expect = 1.7e-84, P = 1.7e-84
Identities = 193/461 (41%), Positives = 259/461 (56%)
Query: 77 YGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLA 136
Y + IQVLEGLEAVRKRP MYIGST RGLHHLVYEI+DN+VDE AG+ +I V +
Sbjct: 9 YNEDAIQVLEGLEAVRKRPGMYIGSTDARGLHHLVYEIVDNSVDEVLAGHGDHIIVKIHK 68
Query: 137 DNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAXXXXXXXXXXXXXXXXXXXXXXXXX 196
DNS+SV D GRG+P +H K E +LTVLHA
Sbjct: 69 DNSISVQDRGRGMPTGMHKL-GKPTPEVILTVLHAGGKFGQGGYKTSGGLHGVGASVV-- 125
Query: 197 NALSESLEVTVWRDGMEYHQKYSRG-KPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTT 255
NALSE L VT+ RDG Y Q++ G KPVT+L + + GT F PD +F+T
Sbjct: 126 NALSEWLTVTIERDGFVYQQRFENGGKPVTSLE----KIGKTKKTGTLTHFKPDPTMFST 181
Query: 256 AIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKK 315
++ T++ R+RE AFL L I L E +D Q +++ G+E +V +LN +K
Sbjct: 182 TT-YNFETLSERLRESAFLLKGLKIELIDERND----QREVFYYENGIEAFVAYLNEEKD 236
Query: 316 PLHDVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLN 375
L +VV F + I +D A Q+ +D YS+ +L + N++RT DGGTH G K ++TR N
Sbjct: 237 VLSEVVSFEGEHHSIEVDFAFQF-NDGYSENILSFVNNVRTKDGGTHESGAKTAMTRAFN 295
Query: 376 SLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNP--EFEGQTKTRLGNPEVRKVVDQS 433
+K +K+KD +L G +REGL+ IISVR+P +FEGQTK +LG E R VD
Sbjct: 296 EYARKVALLKEKDKNLEGTDIREGLSAIISVRIPEELLQFEGQTKGKLGTSEARSAVDAI 355
Query: 434 VQEYLTEYLELHPDVXXXXXXXXXXXXXXXXXXXXXXXXVR--QKSVLRSSSLPGKLADC 491
V E L +LE + D R +K ++L GKL
Sbjct: 356 VSEQLAYFLEENRDTATLLVKKAIKASQAREAARKAREEARSGKKRKKSEATLSGKLTPA 415
Query: 492 SSTTPEESEIFIVEGDSAGGSAKQGRDRRFQVIINPLQESI 532
S P ++E+++VEGDSAGGSAKQGRDRRFQ ++ PL+ +
Sbjct: 416 GSRNPAKNELYLVEGDSAGGSAKQGRDRRFQAVL-PLRGKV 455
>TIGR_CMR|SO_0011 [details] [associations]
symbol:SO_0011 "DNA gyrase, B subunit" species:211586
"Shewanella oneidensis MR-1" [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] [GO:0009330 "DNA topoisomerase complex
(ATP-hydrolyzing)" evidence=ISS] HAMAP:MF_01898 InterPro:IPR001241
InterPro:IPR002288 InterPro:IPR003594 InterPro:IPR011557
InterPro:IPR013506 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986 Pfam:PF02518
PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387 SMART:SM00433
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737
GO:GO:0005694 GO:GO:0006261 EMBL:AE014299 GenomeReviews:AE014299_GR
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0006265
GO:GO:0003918 SUPFAM:SSF56719 HOGENOM:HOG000075155 KO:K02470
Gene3D:3.40.50.670 TIGRFAMs:TIGR01059 OMA:IFETTEF
ProtClustDB:PRK14939 HSSP:P06982 RefSeq:NP_715653.1
ProteinModelPortal:Q8EKS9 SMR:Q8EKS9 GeneID:1167909
KEGG:son:SO_0011 PATRIC:23519713 Uniprot:Q8EKS9
Length = 805
Score = 841 (301.1 bits), Expect = 5.6e-84, P = 5.6e-84
Identities = 183/460 (39%), Positives = 268/460 (58%)
Query: 76 TYGSEQIQVLEGLEAVRKRPAMYIGSTGP-RGLHHLVYEILDNAVDEAQAGYASNIEVAL 134
+Y S I+VL+GL+AVRKRP MYIG T GLHH+V+E++DN++DEA AG+ ++I + +
Sbjct: 5 SYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCTDITITI 64
Query: 135 LADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAXXXXXXXXXXXXXXXXXXXXXXX 194
D SVSV D+GRGIP+ +H SA E ++TVLHA
Sbjct: 65 HVDGSVSVKDDGRGIPVSIHEEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVV 124
Query: 195 XXNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFT 254
NALS+ L++T+ RDG + Q Y+ G P + + + GT IRFWP +Q F+
Sbjct: 125 --NALSKKLQLTIRRDGKVHEQFYTHGVP----DAPIKEIGDATKTGTEIRFWPSEQTFS 178
Query: 255 TAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDK 314
++F +A R+REL+FLN + +R D KN++ +Y GG+ +V +LN +K
Sbjct: 179 N-VEFHFEILAKRVRELSFLNSG--VGIRLVDERDNKNEFFKY--EGGISAFVDYLNRNK 233
Query: 315 KPLH-DVVGFRKDVD-GITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTR 372
P++ DV F ++ D GIT+++A+QW +D Y + + + N+I DGGTH+ G +++LTR
Sbjct: 234 TPVNKDVFHFMQERDDGITVEVAMQW-NDGYQENIFCFTNNIPQRDGGTHLAGFRSALTR 292
Query: 373 TLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQ 432
LN+ + K + +G+ REGLT +ISV+VP+P+F QTK +L + EV+ V+Q
Sbjct: 293 NLNNYMENEGYNKKGKTNATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKAAVEQ 352
Query: 433 SVQEYLTEYLELHPDVXXXXXXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGKLADCS 492
++ E L +YL +P R+K L LPGKLADC
Sbjct: 353 TMGEKLNDYLLENPADAKLIVGKIVDAARAREAARKAREMTRRKGALDLGGLPGKLADCQ 412
Query: 493 STTPEESEIFIVEGDSAGGSAKQGRDRRFQVIINPLQESI 532
P SEI+IVEGDSAGGSAKQGR+R+ Q I+ PL+ I
Sbjct: 413 EKDPGLSEIYIVEGDSAGGSAKQGRNRKNQAIL-PLKGKI 451
>UNIPROTKB|A6UX65 [details] [associations]
symbol:gyrB "DNA gyrase subunit B" species:381754
"Pseudomonas aeruginosa PA7" [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
HAMAP:MF_01898 InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
GO:GO:0007059 GO:GO:0006261 EMBL:CP000744 GenomeReviews:CP000744_GR
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0009295
GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719 eggNOG:COG0187
HOGENOM:HOG000075155 KO:K02470 Gene3D:3.40.50.670
TIGRFAMs:TIGR01059 OMA:IFETTEF ProtClustDB:PRK14939
RefSeq:YP_001345400.1 ProteinModelPortal:A6UX65 SMR:A6UX65
STRING:A6UX65 GeneID:5358744 KEGG:pap:PSPA7_0004 PATRIC:19821910
BioCyc:PAER381754:GHMY-79-MONOMER Uniprot:A6UX65
Length = 806
Score = 838 (300.0 bits), Expect = 1.2e-83, P = 1.2e-83
Identities = 186/463 (40%), Positives = 267/463 (57%)
Query: 74 SKTYGSEQIQVLEGLEAVRKRPAMYIGSTGP-RGLHHLVYEILDNAVDEAQAGYASNIEV 132
+ TY S I+VL+GL+AVRKRP MYIG T GLHH+V+E++DN++DEA AGY S I +
Sbjct: 4 NNTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCSEISI 63
Query: 133 ALLADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAXXXXXXXXXXXXXXXXXXXXX 192
+ D S++V DNGRGIP+D+H SA E ++TVLHA
Sbjct: 64 TIHTDESITVRDNGRGIPVDIHKEEGVSAAEVIMTVLHAGGKFDDNTYKVSGGLHGVGVS 123
Query: 193 XXXXNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQV 252
NALS L +T+ R + Q Y G P L V D GT + F P +
Sbjct: 124 VV--NALSHELRLTIRRHNKVWEQVYHHGVPQFPLR----EVGETDGSGTEVHFKPSPET 177
Query: 253 FTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYF-FAGGLEEYVQWLN 311
F+ I F + +A RIREL+FLN + I LR E + E E F + GGL+ +V++LN
Sbjct: 178 FSN-IHFSWDILAKRIRELSFLNSGVGILLRDERTGKE-----ELFKYEGGLKAFVEYLN 231
Query: 312 TDKKPLHDVVGF--RKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKAS 369
T+K ++ V F +++ DG+ +++ALQW +D++++ +L + N+I DGGTH+ G +++
Sbjct: 232 TNKSAVNQVFHFNVQREEDGVGVEVALQW-NDSFNENILCFTNNIPQRDGGTHLAGFRSA 290
Query: 370 LTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKV 429
LTR LN+ + K I+ +G+ REGLT IISV+VP+P+F QTK +L + EV+
Sbjct: 291 LTRNLNNYIEAEGLAKKFKIATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTA 350
Query: 430 VDQSVQEYLTEYLELHPDVXXXXXXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGKLA 489
V+Q + +Y ++L +P+ R+K L + LPGKLA
Sbjct: 351 VEQEMGKYFADFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLA 410
Query: 490 DCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQVIINPLQESI 532
DC P SE++IVEGDSAGGSAKQGR+RR Q I+ PL+ I
Sbjct: 411 DCQEKDPALSELYIVEGDSAGGSAKQGRNRRTQAIL-PLKGKI 452
>TIGR_CMR|NSE_0721 [details] [associations]
symbol:NSE_0721 "DNA gyrase, B subunit" species:222891
"Neorickettsia sennetsu str. Miyayama" [GO:0003916 "DNA
topoisomerase activity" evidence=ISS] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=ISS]
[GO:0006265 "DNA topological change" evidence=ISS] [GO:0009330 "DNA
topoisomerase complex (ATP-hydrolyzing)" evidence=ISS]
HAMAP:MF_01898 InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
GO:GO:0006261 Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 EMBL:CP000237
GenomeReviews:CP000237_GR GO:GO:0006265 GO:GO:0003918
SUPFAM:SSF56719 eggNOG:COG0187 HOGENOM:HOG000075155 KO:K02470
Gene3D:3.40.50.670 TIGRFAMs:TIGR01059 OMA:IFETTEF
ProtClustDB:PRK14939 RefSeq:YP_506597.1 ProteinModelPortal:Q2GD49
SMR:Q2GD49 STRING:Q2GD49 GeneID:3932056 KEGG:nse:NSE_0721
PATRIC:22681457 BioCyc:NSEN222891:GHFU-733-MONOMER Uniprot:Q2GD49
Length = 783
Score = 832 (297.9 bits), Expect = 5.0e-83, P = 5.0e-83
Identities = 179/463 (38%), Positives = 272/463 (58%)
Query: 73 VSKT-YGSEQIQVLEGLEAVRKRPAMYIGSTGP-RGLHHLVYEILDNAVDEAQAGYASNI 130
+S T Y ++ I+VL+GLEAVRKRP MYIG T GLH +VYE++DN+VDE+ AGY + I
Sbjct: 1 MSNTDYTADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHQMVYEVVDNSVDESLAGYCTAI 60
Query: 131 EVALLADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAXXXXXXXXXXXXXXXXXXX 190
EV + D S+SV DNGRG+P D+H SA E ++T LHA
Sbjct: 61 EVVIDVDGSISVEDNGRGMPTDMH-GEGVSAAEVIMTQLHAGGKFDQSSYKVSGGLHGVG 119
Query: 191 XXXXXXNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDK 250
NALS+ L++T++RDG + ++ G+ V +L+ + + D+ GT + F P +
Sbjct: 120 VSVV--NALSDWLKLTIYRDGKVHFAEFENGETVRSLS---VTGECGDKTGTLVHFLPSR 174
Query: 251 QVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWL 310
F + +T+ R REL+FLNP L I+L + +F +GG EE+V +L
Sbjct: 175 STFKNTTEVSFSTLENRFRELSFLNPGLRISLLDMRKGSSTGKV-VFFSSGGTEEFVAYL 233
Query: 311 NTDKKPLHDV-VGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKAS 369
+ K+P+H + VD I ID+++QW +D+Y + +L + N+I+ DGGTH+ ++++
Sbjct: 234 DRSKQPIHSTPIRVVGGVDSIAIDVSMQW-NDSYYENVLCFTNNIKQKDGGTHLAALRSA 292
Query: 370 LTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKV 429
+TR +++ K +K + +SGE VREGL+ I+SV++P+P+F QTK +L + EV+ V
Sbjct: 293 MTRVMHNYIVKENLIKKDKVVVSGEDVREGLSAILSVKLPDPKFSSQTKEKLISSEVKPV 352
Query: 430 VDQSVQEYLTEYLELHPDVXXXXXXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGKLA 489
+++ V + L +LE +P R+K L ++LPGKLA
Sbjct: 353 IEKIVSDALASWLEENPSSARVIARKVVESALAREAAKKARDLTRRKGGLEITTLPGKLA 412
Query: 490 DCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQVIINPLQESI 532
DC +PE SE+ IVEGDSAGGSAKQGRDR+ Q ++ PL+ I
Sbjct: 413 DCQEKSPELSELLIVEGDSAGGSAKQGRDRKTQAVL-PLRGKI 454
>UNIPROTKB|P35886 [details] [associations]
symbol:gyrB "DNA gyrase subunit B" species:100226
"Streptomyces coelicolor A3(2)" [GO:0003918 "DNA topoisomerase type
II (ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
HAMAP:MF_01898 InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
GO:GO:0007059 GO:GO:0006261 GenomeReviews:AL645882_GR
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0009295
GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719 EMBL:L27063
EMBL:AL939118 eggNOG:COG0187 KO:K02470 Gene3D:3.40.50.670
TIGRFAMs:TIGR01059 PROSITE:PS50880 OMA:IFETTEF ProtClustDB:PRK05644
HOGENOM:HOG000075154 RefSeq:NP_628061.1 ProteinModelPortal:P35886
GeneID:1099310 KEGG:sco:SCO3874 PATRIC:23737532 Uniprot:P35886
Length = 686
Score = 831 (297.6 bits), Expect = 6.4e-83, P = 6.4e-83
Identities = 188/476 (39%), Positives = 274/476 (57%)
Query: 74 SKTYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVA 133
S +Y + I VLEGL+AVRKRP MYIGSTG RGLHHLV E++DN+VDEA AG+A I+V
Sbjct: 30 SASYDASAITVLEGLDAVRKRPGMYIGSTGERGLHHLVQEVVDNSVDEALAGHADTIDVT 89
Query: 134 LLADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAXXXXXXXXXXXXXXXXXXXXXX 193
+L D V V DNGRGIP+ + P+ K A+E VLTVLHA
Sbjct: 90 ILPDGGVRVVDNGRGIPVGIVPSEGKPAVEVVLTVLHAGGKFGGGGYAVSGGLHGVGVSV 149
Query: 194 XXXNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVF 253
NALS + V V DG + Q+Y G P +L H ++ + GT + FW D +F
Sbjct: 150 V--NALSTRVAVEVKTDGYRWTQEYKLGVPTASLARH----EATEETGTTVTFWADGDIF 203
Query: 254 -TTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDS----------DPEKNQYNE--YFFA 300
TT F+ + + K+ + +E + + EK++ Y +
Sbjct: 204 ETTDYSFETLSRRFQEMAFLNKGLKINLTDERESAKATAGADEAGEDEKHEVKSVSYHYE 263
Query: 301 GGLEEYVQWLNTDKKPL-HD-VVGFR-KDVD-GITIDLALQWCSDAYSDTMLGYANSIRT 356
GG+ ++V +LN+ K L H V+ +D D +++++A+QW + Y++ + +AN I T
Sbjct: 264 GGIVDFVTYLNSRKGELVHPTVIDLEAEDKDKSLSLEVAMQW-NGGYTEGVYSFANIIHT 322
Query: 357 IDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQ 416
+GGTH EG +A+LT +N + K +++KD +L+G+ +REGLT IISV++ P+FEGQ
Sbjct: 323 HEGGTHEEGFRAALTSLINKYARDKKLLREKDDNLTGDDIREGLTAIISVKLAEPQFEGQ 382
Query: 417 TKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVXXXXXXXXXXXXXXXXXXXXXXXXVRQK 476
TKT+LGN EV+ V + V E+LT++L+ +P+ R+K
Sbjct: 383 TKTKLGNTEVKTFVQKVVYEHLTDWLDRNPNEAADIIRKGIQAAHARVAARKARDLTRRK 442
Query: 477 SVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQVIINPLQESI 532
+L S+SLPGKL+DC S P + EIFIVEGDSAGGSAK GR+ ++Q I+ P++ I
Sbjct: 443 GLLESASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRNPQYQAIL-PIRGKI 497
>UNIPROTKB|A9WGP2 [details] [associations]
symbol:gyrB "DNA gyrase subunit B" species:324602
"Chloroflexus aurantiacus J-10-fl" [GO:0003918 "DNA topoisomerase
type II (ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
HAMAP:MF_01898 InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
GO:GO:0007059 GO:GO:0006261 Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 EMBL:CP000909 GenomeReviews:CP000909_GR
GO:GO:0009295 GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719
eggNOG:COG0187 KO:K02470 Gene3D:3.40.50.670 TIGRFAMs:TIGR01059
OMA:IFETTEF ProtClustDB:PRK05644 HOGENOM:HOG000075154
RefSeq:YP_001636597.1 ProteinModelPortal:A9WGP2 STRING:A9WGP2
GeneID:5827483 KEGG:cau:Caur_3009 PATRIC:21417339
BioCyc:CAUR324602:GIXU-3058-MONOMER Uniprot:A9WGP2
Length = 636
Score = 824 (295.1 bits), Expect = 3.6e-82, P = 3.6e-82
Identities = 181/464 (39%), Positives = 261/464 (56%)
Query: 70 ENPVSKTYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASN 129
E P TY QIQVLEG+EAVRKRP MYIG T GLH +V E++DN+VDE AG A++
Sbjct: 4 ETPT--TYDESQIQVLEGMEAVRKRPGMYIGPTDINGLHTMVREVVDNSVDEVMAGRATS 61
Query: 130 IEVALLADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAXXXXXXXXXXXXXXXXXX 189
+ V + D SV+V+D+G GIP+ +HP S L V+T LHA
Sbjct: 62 VSVTIHRDGSVTVSDDGSGIPVGIHPKEGISTLTLVMTRLHAGGKFGSGGYKVSSGLHGV 121
Query: 190 XXXXXXXNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPD 249
NALS + V V+R+G Y+Q+Y G PVT V+ ++ DR GT RF PD
Sbjct: 122 GVSAV--NALSAYMRVDVYRNGRHYYQEYRAGVPVTD----VIDLEPTDRHGTTTRFLPD 175
Query: 250 KQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQW 309
+ T + ++ +T+A R RE+++LN L E ++ E N ++F GG+ YV+
Sbjct: 176 TSIIQT-LDYNFDTLAQRFREMSYLNKGLRFKFVDERTNRELN----FYFEGGIVSYVRH 230
Query: 310 LNTDKKPLHDVVGF-RKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKA 368
LN +K LH + + VD + +++ALQ+ +D + +AN+I DGG+H+ G +
Sbjct: 231 LNKEKTVLHRQPFYVERIVDDVMVEVALQYTDSFDTDNVYTFANNINNADGGSHLSGFRT 290
Query: 369 SLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRK 428
+LTR +N+ + +KD + +L+G+ VREGLT +ISV++ +P+F QTK +L +PE
Sbjct: 291 ALTRVINNYARAKGLLKDNESNLTGDDVREGLTAVISVKLKDPQFSSQTKEKLVSPEAAS 350
Query: 429 VVDQSVQEYLTEYLELHPDVXXXXXXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGKL 488
V + + +L+ +P R KS + SLPGKL
Sbjct: 351 AVATVFSDAFSAWLDENPTEARRIIEKAISAARTRLAVQKVRETAR-KSAMEGFSLPGKL 409
Query: 489 ADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQVIINPLQESI 532
ADCS P E++IVEGDSAGG+AKQGRDRRFQ I+ PL+ I
Sbjct: 410 ADCSDPNPARCELYIVEGDSAGGTAKQGRDRRFQAIL-PLRGKI 452
>TIGR_CMR|APH_0716 [details] [associations]
symbol:APH_0716 "DNA gyrase, B subunit" species:212042
"Anaplasma phagocytophilum HZ" [GO:0003916 "DNA topoisomerase
activity" evidence=ISS] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=ISS] [GO:0006265 "DNA
topological change" evidence=ISS] [GO:0009330 "DNA topoisomerase
complex (ATP-hydrolyzing)" evidence=ISS] HAMAP:MF_01898
InterPro:IPR001241 InterPro:IPR002288 InterPro:IPR003594
InterPro:IPR011557 InterPro:IPR013506 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986
Pfam:PF02518 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0005737 GO:GO:0005694 GO:GO:0006261 EMBL:CP000235
GenomeReviews:CP000235_GR Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719
eggNOG:COG0187 HOGENOM:HOG000075155 KO:K02470 Gene3D:3.40.50.670
TIGRFAMs:TIGR01059 OMA:IFETTEF ProtClustDB:PRK14939
RefSeq:YP_505297.1 ProteinModelPortal:Q2GK04 SMR:Q2GK04
STRING:Q2GK04 GeneID:3930586 KEGG:aph:APH_0716 PATRIC:20950116
BioCyc:APHA212042:GHPM-734-MONOMER Uniprot:Q2GK04
Length = 793
Score = 824 (295.1 bits), Expect = 3.6e-82, P = 3.6e-82
Identities = 174/456 (38%), Positives = 263/456 (57%)
Query: 76 TYGSEQIQVLEGLEAVRKRPAMYIGSTGP-RGLHHLVYEILDNAVDEAQAGYASNIEVAL 134
+Y + I VL GL+AV+KRP MYIG T GLHH+ YE++DNA+DEA AG+ + I++ +
Sbjct: 3 SYNASSITVLRGLDAVKKRPGMYIGDTDDGSGLHHMAYEVIDNAIDEALAGFCNKIDIVI 62
Query: 135 LADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAXXXXXXXXXXXXXXXXXXXXXXX 194
AD S+SV DNGRGIPID+H SA E ++T LHA
Sbjct: 63 AADGSISVTDNGRGIPIDIHEEEGISAAEVIMTQLHAGGKFDHNSYKVSGGLHGVGVSVV 122
Query: 195 XXNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFT 254
NALS LE+ ++++G EY ++ GK V L + + +++GT +RF P VF+
Sbjct: 123 --NALSSWLELVIYKEGREYFMRFEEGKAVAPLK---MVGECGNKKGTCVRFMPSSDVFS 177
Query: 255 TAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDP--EKNQYNEYFFAG-GLEEYVQWLN 311
F ++T+ RIREL+FLN ++I+L+ P E N N A G+ +V++L+
Sbjct: 178 FT-DFSYSTLENRIRELSFLNSNVSISLKDLRESPVLESNFGNVSDAATKGVSLFVEYLD 236
Query: 312 TDKKPLHDVVGFRKDVDGITIDLALQWC-SDAYSDTMLGYANSIRTIDGGTHIEGVKASL 370
+K P+ V+ + G I + + C +D+Y + ML + N+IR +GGTH+ G +++L
Sbjct: 237 RNKTPVTPVITLSGIMSGYEISVEVSMCWNDSYYENMLCFTNNIRQREGGTHLAGFRSAL 296
Query: 371 TRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVV 430
TR +N+ +K +S+ GE VREGLTC++S+++P+P F QTK +L + E R VV
Sbjct: 297 TRCVNNYATNEGYLKKAKVSIIGEDVREGLTCVLSIKMPDPRFSSQTKDKLVSSEARLVV 356
Query: 431 DQSVQEYLTEYLELHPDVXXXXXXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGKLAD 490
+ + E L+ E +P + ++ + L +S+PGKLAD
Sbjct: 357 ESIMFEKLSSIFETNPKLAMSVVERVIRSAKGREAARKAREVIKSRGTLDFTSIPGKLAD 416
Query: 491 CSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQVIIN 526
C +PE SE+FIVEG+SAGGSAKQGRDRR Q +++
Sbjct: 417 CQEKSPELSELFIVEGNSAGGSAKQGRDRRCQAVLS 452
>TIGR_CMR|ECH_0620 [details] [associations]
symbol:ECH_0620 "DNA gyrase, B subunit" species:205920
"Ehrlichia chaffeensis str. Arkansas" [GO:0003916 "DNA
topoisomerase activity" evidence=ISS] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=ISS]
[GO:0006265 "DNA topological change" evidence=ISS] [GO:0009330 "DNA
topoisomerase complex (ATP-hydrolyzing)" evidence=ISS]
HAMAP:MF_01898 InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0006261
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0006265
GO:GO:0003918 SUPFAM:SSF56719 eggNOG:COG0187 HOGENOM:HOG000075155
KO:K02470 Gene3D:3.40.50.670 TIGRFAMs:TIGR01059 OMA:IFETTEF
ProtClustDB:PRK14939 RefSeq:YP_507430.1 ProteinModelPortal:Q2GGK3
STRING:Q2GGK3 GeneID:3927738 KEGG:ech:ECH_0620 PATRIC:20576692
BioCyc:ECHA205920:GJNR-622-MONOMER Uniprot:Q2GGK3
Length = 798
Score = 813 (291.2 bits), Expect = 5.2e-81, P = 5.2e-81
Identities = 174/462 (37%), Positives = 270/462 (58%)
Query: 77 YGSEQIQVLEGLEAVRKRPAMYIGSTGP-RGLHHLVYEILDNAVDEAQAGYASNIEVALL 135
Y + I VL+GL+AVRKRP MYIG T GLHH+VYE++DN++DEA AG+ + I++ +
Sbjct: 4 YNASSITVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVIDNSIDEALAGFCNKIDIVIQ 63
Query: 136 ADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAXXXXXXXXXXXXXXXXXXXXXXXX 195
+D SVSV DNGRGIP+D+H SA E ++T LHA
Sbjct: 64 SDGSVSVVDNGRGIPVDMHEDEGMSAAEVIMTQLHAGGKFDHNSYKVSGGLHGVGISVV- 122
Query: 196 XNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTT 255
NALS LE+T+WR+G EY ++ G V +L+ + ++ ++GT+I F P K +F++
Sbjct: 123 -NALSSWLELTIWRNGKEYFMRFEDGITVKSLS---VVGENTTKKGTKITFLPSKNIFSS 178
Query: 256 AIQFDHNTIAGRIRELAFLNPKLTIALRKE------DSD---PEKNQYNEYFFAGGLEEY 306
I F ++T+ RIREL+FLN + + L+ +S + ++ N+ G +
Sbjct: 179 -INFSYSTLENRIRELSFLNSNINMNLKDLRGAQILNSSFGLKDNSKVND-IEDRGTAAF 236
Query: 307 VQWLNTDKKPLHDVVGFRKDV--DGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIE 364
V++L+ +K + VV V GI+++L++ W +D+Y + ML + N+IR DGGTH+
Sbjct: 237 VKYLDRNKTAVTKVVHIEGIVLEHGISLELSMHW-NDSYYENMLCFTNNIRQKDGGTHLA 295
Query: 365 GVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNP 424
G ++++TR +N+ +K +++ GE VREGLTC++++++P+P+F QTK +L +
Sbjct: 296 GFRSAMTRCINNYATNEGFLKKAKVNILGEDVREGLTCVLAIKLPDPKFSSQTKDKLVSS 355
Query: 425 EVRKVVDQSVQEYLTEYLELHPDVXXXXXXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSL 484
E R V+ V E LT E +P + ++ K+ + L
Sbjct: 356 EARTAVENIVYEKLTNIFETNPKLATSIIERIIRSAKGREAARRARDLIKSKNGFDFTIL 415
Query: 485 PGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQVIIN 526
PGKLADC +PE SE+FIVEG+SAGGSAKQGRDRR Q +++
Sbjct: 416 PGKLADCQEKSPELSELFIVEGNSAGGSAKQGRDRRSQAVLS 457
>UNIPROTKB|Q7RHG3 [details] [associations]
symbol:PY04024 "DNA topoisomerase II, putative"
species:73239 "Plasmodium yoelii yoelii" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IBA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IBA]
[GO:0006265 "DNA topological change" evidence=IBA] [GO:0007059
"chromosome segregation" evidence=IBA] [GO:0009295 "nucleoid"
evidence=IBA] InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR013506 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986
Pfam:PF02518 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0005694 GO:GO:0007059 GO:GO:0006261 Gene3D:3.30.565.10
SUPFAM:SSF55874 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0009295 GO:GO:0006265
GO:GO:0003918 SUPFAM:SSF56719 eggNOG:COG0187 KO:K02470
Gene3D:3.40.50.670 HSSP:P06982 EMBL:AABL01001206 RefSeq:XP_724272.1
ProteinModelPortal:Q7RHG3 STRING:Q7RHG3 GeneID:3789597
KEGG:pyo:PY04024 EuPathDB:PlasmoDB:PY04024 Uniprot:Q7RHG3
Length = 930
Score = 430 (156.4 bits), Expect = 2.3e-79, Sum P(3) = 2.3e-79
Identities = 89/237 (37%), Positives = 146/237 (61%)
Query: 301 GGLEEYVQWLNTDK----KPLHDVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRT 356
GGL+EY++ L +K K + V+ I +DL L+W ++ Y++ +L + N++ T
Sbjct: 407 GGLDEYMEKLTKNKTNIFKTNNKVISISCFQKNIHVDLKLKWVTNQYNENILSFVNNVNT 466
Query: 357 IDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQ 416
IDGGTH++ +K +++R++N KK++T+K+ +++ GE++REGLT I+S+++ NPEFEGQ
Sbjct: 467 IDGGTHVDAMKYAISRSINYNVKKNETIKNF-VNIPGEYIREGLTAILSIKMNNPEFEGQ 525
Query: 417 TKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVXXXXXXXXXXXXXXXXXXXXXXXXVRQK 476
TKT+LG+ ++ +++ + E L+E + P++ +R K
Sbjct: 526 TKTKLGSYYLKPILESIIFEKLSEIFDFEPNLLNTIYLKALQAKKSDEEAKAARDLIRSK 585
Query: 477 S-VLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQVIINPLQESI 532
+ S+ LPGKL DC S ++EIFIVEGDSA GSAKQ R+R Q I+ PL+ I
Sbjct: 586 NNQYYSTILPGKLVDCISDDISKNEIFIVEGDSAAGSAKQARNREIQAIL-PLKGKI 641
Score = 289 (106.8 bits), Expect = 2.3e-79, Sum P(3) = 2.3e-79
Identities = 55/95 (57%), Positives = 72/95 (75%)
Query: 77 YGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLA 136
Y ++ I +LEGLEAVRKRP MYIG+T +GLH +++EI+DNAVDE + I+V +
Sbjct: 113 YDAKDIVILEGLEAVRKRPGMYIGNTDSKGLHQILFEIVDNAVDEYNNHECNQIKVIIHN 172
Query: 137 DNSVSVADNGRGIPIDLHPATNKSALETVLTVLHA 171
D S+++ DNGRGIP D+H T KSALETVLTVLH+
Sbjct: 173 DESITIEDNGRGIPCDIHEKTKKSALETVLTVLHS 207
Score = 139 (54.0 bits), Expect = 2.3e-79, Sum P(3) = 2.3e-79
Identities = 33/96 (34%), Positives = 52/96 (54%)
Query: 197 NALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTA 256
NALS ++V V+RD Y+ + +GK V L P+ ++GT+I + PD +F T
Sbjct: 287 NALSTFMKVNVFRDNKIYNIELEKGKVVKELNVQDCPIK---KRGTQIHYKPDNTIFKTN 343
Query: 257 IQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKN 292
I+ + I R+ +LA+LN KLT E + + N
Sbjct: 344 IKHNSEFIKNRLHQLAYLNDKLTFYFYDERNSNKGN 379
>GENEDB_PFALCIPARUM|PFL1915w [details] [associations]
symbol:PFL1915w "dna gyrase subunit b, putative"
species:5833 "Plasmodium falciparum" [GO:0020011 "apicoplast"
evidence=IDA] InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR013506 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986
Pfam:PF02518 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0005694 EMBL:AE014188 Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 GO:GO:0020011 GO:GO:0006265 GO:GO:0003918
SUPFAM:SSF56719 KO:K02470 Gene3D:3.40.50.670 HOGENOM:HOG000075156
GenomeReviews:AE014188_GR HSSP:P06982 RefSeq:XP_001350789.1
ProteinModelPortal:Q8I528 IntAct:Q8I528 MINT:MINT-1670662
PRIDE:Q8I528 EnsemblProtists:PFL1915w:mRNA GeneID:811435
KEGG:pfa:PFL1915w EuPathDB:PlasmoDB:PF3D7_1239500 OMA:YDERSEN
ProtClustDB:PTZ00109 Uniprot:Q8I528
Length = 1006
Score = 409 (149.0 bits), Expect = 1.3e-76, Sum P(3) = 1.3e-76
Identities = 87/236 (36%), Positives = 141/236 (59%)
Query: 302 GLEEYVQWLNTDKKPL---HD-VVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTI 357
GL EY+ + +K L +D ++ I IDL ++W S+ Y++ ++ + N++ T
Sbjct: 465 GLNEYITNITKNKTNLFKDNDKIISISCYHKNIYIDLRMKWLSNQYNENIISFVNNVNTT 524
Query: 358 DGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQT 417
DGGTH++ +K +++R +N KK++ +K+ +++ GE++REGLT I+SV++ NPEFEGQT
Sbjct: 525 DGGTHVDALKYAVSRCVNYNIKKNEMIKNF-VNIPGEYIREGLTAILSVKMNNPEFEGQT 583
Query: 418 KTRLGNPEVRKVVDQSVQEYLTEYLELHPDVXXXXXXXXXXXXXXXXXXXXXXXXVRQKS 477
KT+LG+ ++ +++ + E L+E + P++ +R K+
Sbjct: 584 KTKLGSHHLKSILESVIFEKLSEIFDFEPNLLSSIYFKALQAKLSDEEAKAARDLIRSKN 643
Query: 478 VLRSSS-LPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQVIINPLQESI 532
SS+ LPGKL DC S +EIFIVEGDSA GSAKQ R+R Q I+ PL+ I
Sbjct: 644 NQYSSTILPGKLVDCISDDISRNEIFIVEGDSAAGSAKQARNREIQAIL-PLKGKI 698
Score = 288 (106.4 bits), Expect = 1.3e-76, Sum P(3) = 1.3e-76
Identities = 55/95 (57%), Positives = 73/95 (76%)
Query: 77 YGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLA 136
Y ++ I +LEGLEAVRKRP MYIG+T +GLH +++EI+DN+VDE + I+V +
Sbjct: 123 YDAKDIVILEGLEAVRKRPGMYIGNTDVKGLHQILFEIIDNSVDEYNNFECNTIKVVIHK 182
Query: 137 DNSVSVADNGRGIPIDLHPATNKSALETVLTVLHA 171
D+SV++ DNGRGIP D+H T KSALETVLTVLH+
Sbjct: 183 DDSVTIEDNGRGIPCDVHEKTKKSALETVLTVLHS 217
Score = 138 (53.6 bits), Expect = 1.3e-76, Sum P(3) = 1.3e-76
Identities = 32/98 (32%), Positives = 55/98 (56%)
Query: 197 NALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTA 256
NALS ++V V+R+ Y + +GK LT P++ ++GT+I + PD +F ++
Sbjct: 290 NALSSFMKVKVFRNNKIYSIELEKGKVTKELTITNCPIN---KRGTQIHYKPDSSIFKSS 346
Query: 257 IQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQY 294
+ + + I RI +LA+LN KLT E S+ + + Y
Sbjct: 347 TKHNSDLIKNRIHQLAYLNEKLTFYFYDERSENKNSIY 384
>UNIPROTKB|Q8I528 [details] [associations]
symbol:GyrB "Term=DNA gyrase subunit B;evidence=inferred
from direct assay" species:36329 "Plasmodium falciparum 3D7"
[GO:0020011 "apicoplast" evidence=IDA] InterPro:IPR001241
InterPro:IPR002288 InterPro:IPR003594 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005694 EMBL:AE014188
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0020011
GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719 KO:K02470
Gene3D:3.40.50.670 HOGENOM:HOG000075156 GenomeReviews:AE014188_GR
HSSP:P06982 RefSeq:XP_001350789.1 ProteinModelPortal:Q8I528
IntAct:Q8I528 MINT:MINT-1670662 PRIDE:Q8I528
EnsemblProtists:PFL1915w:mRNA GeneID:811435 KEGG:pfa:PFL1915w
EuPathDB:PlasmoDB:PF3D7_1239500 OMA:YDERSEN ProtClustDB:PTZ00109
Uniprot:Q8I528
Length = 1006
Score = 409 (149.0 bits), Expect = 1.3e-76, Sum P(3) = 1.3e-76
Identities = 87/236 (36%), Positives = 141/236 (59%)
Query: 302 GLEEYVQWLNTDKKPL---HD-VVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTI 357
GL EY+ + +K L +D ++ I IDL ++W S+ Y++ ++ + N++ T
Sbjct: 465 GLNEYITNITKNKTNLFKDNDKIISISCYHKNIYIDLRMKWLSNQYNENIISFVNNVNTT 524
Query: 358 DGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQT 417
DGGTH++ +K +++R +N KK++ +K+ +++ GE++REGLT I+SV++ NPEFEGQT
Sbjct: 525 DGGTHVDALKYAVSRCVNYNIKKNEMIKNF-VNIPGEYIREGLTAILSVKMNNPEFEGQT 583
Query: 418 KTRLGNPEVRKVVDQSVQEYLTEYLELHPDVXXXXXXXXXXXXXXXXXXXXXXXXVRQKS 477
KT+LG+ ++ +++ + E L+E + P++ +R K+
Sbjct: 584 KTKLGSHHLKSILESVIFEKLSEIFDFEPNLLSSIYFKALQAKLSDEEAKAARDLIRSKN 643
Query: 478 VLRSSS-LPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQVIINPLQESI 532
SS+ LPGKL DC S +EIFIVEGDSA GSAKQ R+R Q I+ PL+ I
Sbjct: 644 NQYSSTILPGKLVDCISDDISRNEIFIVEGDSAAGSAKQARNREIQAIL-PLKGKI 698
Score = 288 (106.4 bits), Expect = 1.3e-76, Sum P(3) = 1.3e-76
Identities = 55/95 (57%), Positives = 73/95 (76%)
Query: 77 YGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLA 136
Y ++ I +LEGLEAVRKRP MYIG+T +GLH +++EI+DN+VDE + I+V +
Sbjct: 123 YDAKDIVILEGLEAVRKRPGMYIGNTDVKGLHQILFEIIDNSVDEYNNFECNTIKVVIHK 182
Query: 137 DNSVSVADNGRGIPIDLHPATNKSALETVLTVLHA 171
D+SV++ DNGRGIP D+H T KSALETVLTVLH+
Sbjct: 183 DDSVTIEDNGRGIPCDVHEKTKKSALETVLTVLHS 217
Score = 138 (53.6 bits), Expect = 1.3e-76, Sum P(3) = 1.3e-76
Identities = 32/98 (32%), Positives = 55/98 (56%)
Query: 197 NALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTA 256
NALS ++V V+R+ Y + +GK LT P++ ++GT+I + PD +F ++
Sbjct: 290 NALSSFMKVKVFRNNKIYSIELEKGKVTKELTITNCPIN---KRGTQIHYKPDSSIFKSS 346
Query: 257 IQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQY 294
+ + + I RI +LA+LN KLT E S+ + + Y
Sbjct: 347 TKHNSDLIKNRIHQLAYLNEKLTFYFYDERSENKNSIY 384
>UNIPROTKB|Q9RVW5 [details] [associations]
symbol:DR_0906 "DNA gyrase, subunit B" species:243230
"Deinococcus radiodurans R1" [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
InterPro:IPR001241 InterPro:IPR002288 InterPro:IPR003594
InterPro:IPR013506 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986 Pfam:PF02518
PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387 SMART:SM00433
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524 GO:GO:0005694
GO:GO:0007059 GO:GO:0006261 Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 GO:GO:0009295 EMBL:AE000513
GenomeReviews:AE000513_GR GO:GO:0006265 GO:GO:0003918
SUPFAM:SSF56719 KO:K02470 Gene3D:3.40.50.670 OMA:IFETTEF
ProtClustDB:PRK05644 HOGENOM:HOG000075154 HSSP:P06982 PIR:A75461
RefSeq:NP_294630.1 ProteinModelPortal:Q9RVW5 SMR:Q9RVW5
GeneID:1799432 KEGG:dra:DR_0906 PATRIC:21629376
BioCyc:DRAD243230:GH46-1277-MONOMER Uniprot:Q9RVW5
Length = 663
Score = 744 (267.0 bits), Expect = 1.1e-73, P = 1.1e-73
Identities = 179/463 (38%), Positives = 252/463 (54%)
Query: 77 YGSEQIQVLEGLEAVRKRPAMYI-GSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALL 135
Y ++QI VLEG++AVRKRP MY+ G TG G H L+ EI+DN +DE AG+A I++ L
Sbjct: 13 YNADQISVLEGMDAVRKRPGMYVQGGTGIDGYHQLLTEIIDNGIDEGLAGFAGEIQIVLH 72
Query: 136 ADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAXXXXXXXXXXXXXXXXXXXXXXXX 195
AD S +V D+GRGIP+D+ + + A+E + + LHA
Sbjct: 73 ADGSATVTDDGRGIPVDIMKSKGRPAIEVIFSELHAGGKFGQGAYKVSGGLHGVGSTVV- 131
Query: 196 XNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKD-RQGTRIRFWPDKQVFT 254
NALS L+VTV + +H ++ RG V L VL KD + T++ F PD +F
Sbjct: 132 -NALSTYLDVTVNKHKQLHHIRFERGVLVQPL--EVLGATPKDVKWSTKVSFHPDPTIFK 188
Query: 255 TAI-QFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFF--AGGLEEYVQWLN 311
QFD+ I R+RELA+L L I +R E ++ + E F GG+ + + L
Sbjct: 189 EFDNQFDYLRIRNRLRELAYLTG-LKIVIRDERTELHGGEIKEEVFHEKGGIANFARALV 247
Query: 312 TDK-KPLHDV-VGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKAS 369
TD K L+D V R + +++A + SD +L YAN IRT DGGT + G K +
Sbjct: 248 TDDTKLLYDQPVVMRGTHAEVEVEVAFIHANTYASDNILTYANMIRTRDGGTPLTGFKTA 307
Query: 370 LTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKV 429
TR LN K +K + SG+ + EG+ C++SV+V +P+FE Q K +L N E +
Sbjct: 308 YTRVLNKYAKDKNLIKAGNPVPSGDDLLEGIYCVVSVKVGDPQFESQAKVKLLNSEAQTA 367
Query: 430 VDQSVQEYLTEYLELHPDVXXXXXXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGKLA 489
V+ V E ++LE +P + VR+ + L + LPGKLA
Sbjct: 368 VNAIVGEKFAQFLEENPKIGKTIVEKAAEAARARDAARKARDIVRRSNPLENDDLPGKLA 427
Query: 490 DCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQVIINPLQESI 532
DCSS P ESE+FIVEG+SAGGSAK GR+RRFQ I+ PL+ I
Sbjct: 428 DCSSQDPAESELFIVEGNSAGGSAKGGRERRFQAIL-PLRGKI 469
>UNIPROTKB|O69998 [details] [associations]
symbol:O69998 "Putative DNA gyrase subunit B"
species:100226 "Streptomyces coelicolor A3(2)" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IBA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IBA]
[GO:0006265 "DNA topological change" evidence=IBA] [GO:0007059
"chromosome segregation" evidence=IBA] [GO:0009295 "nucleoid"
evidence=IBA] InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR013506 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986
Pfam:PF02518 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0005694 GO:GO:0007059 GO:GO:0006261 GenomeReviews:AL645882_GR
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0009295
GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719 KO:K02470
Gene3D:3.40.50.670 HOGENOM:HOG000075154 ProtClustDB:PRK05559
HSSP:P06982 EMBL:AL939125 PIR:T35196 RefSeq:NP_629945.1
ProteinModelPortal:O69998 GeneID:1101264 KEGG:sco:SCO5822
PATRIC:23741544 OMA:DSEMIIS Uniprot:O69998
Length = 707
Score = 403 (146.9 bits), Expect = 1.1e-66, Sum P(2) = 1.1e-66
Identities = 102/261 (39%), Positives = 136/261 (52%)
Query: 77 YGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLA 136
Y + + VLEGLEAVRKRP MYIGST RGL H ++EI+DN+VDEA GY +IEV L
Sbjct: 23 YTARHLLVLEGLEAVRKRPGMYIGSTDSRGLMHCLWEIIDNSVDEALGGYCDHIEVILHD 82
Query: 137 DNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAXXXXXXXXXXXXXXXXXXXXXXXXX 196
D SV V DNGRGIP+D+ P T S +E V+T LHA
Sbjct: 83 DASVEVRDNGRGIPVDVEPKTGLSGVEVVMTKLHAGGKFGGGAYAASGGLHGVGASVV-- 140
Query: 197 NALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCH----------VLPVDS--KDRQGTRI 244
NALS L++ V G + + RG P T + V K R+GTR+
Sbjct: 141 NALSARLDIEVDLGGHTHAISFRRGVPGTFAKAGPDAKFEAGSGLRKVKKVPKSRRGTRV 200
Query: 245 RFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDS--DPEKNQYNEYFFAGG 302
R+W D+Q+F + + + R R+ AFL P LTI +R E D + F GG
Sbjct: 201 RYWADRQIFLKDAKLSLDNLHQRARQTAFLVPGLTIVVRDEFGLGDGGSKGEESFRFDGG 260
Query: 303 LEEYVQWLNTDKKPLHDVVGF 323
+ E+ ++L D+ P+ DV+ F
Sbjct: 261 ISEFCEFLAGDR-PVCDVLRF 280
Score = 306 (112.8 bits), Expect = 1.1e-66, Sum P(2) = 1.1e-66
Identities = 69/205 (33%), Positives = 107/205 (52%)
Query: 332 IDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISL 391
+D+AL+W Y T+ + N I T GGTH+ G + ++ +T+N + + K ++ + +
Sbjct: 310 VDVALRW-GTGYDTTVRSFVNIIATPKGGTHVAGFEQAVAKTMNEVLRTKKMLRVAEDDI 368
Query: 392 SGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYL-ELHPDVXX 450
+ EGLT +++VR+ P+FEGQTK LG R++V+ + L +L D
Sbjct: 369 VKDDALEGLTAVVTVRLAEPQFEGQTKEVLGTSAARRIVNNVISRELKAFLTSTKRDAAQ 428
Query: 451 XXXXXXXXXXXXXXXXXXXXX---XVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGD 507
R+K+ L SSSLP KLADC S + SE+FIVEGD
Sbjct: 429 QARVVMEKAVAAARTRIAARQHKDAQRRKTALESSSLPAKLADCRSDDVDRSELFIVEGD 488
Query: 508 SAGGSAKQGRDRRFQVIINPLQESI 532
SA G+AK R+ FQ ++ P++ I
Sbjct: 489 SALGTAKLARNSEFQALL-PIRGKI 512
>TAIR|locus:2146658 [details] [associations]
symbol:GYRB3 "DNA GYRASE B3" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0003918
"DNA topoisomerase type II (ATP-hydrolyzing) activity"
evidence=IEA;ISS;IBA] [GO:0005524 "ATP binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0005694 "chromosome"
evidence=IEA] [GO:0006200 "ATP catabolic process" evidence=IBA]
[GO:0006259 "DNA metabolic process" evidence=ISS] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IEA;ISS;IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0009330 "DNA topoisomerase complex
(ATP-hydrolyzing)" evidence=IBA] [GO:0003916 "DNA topoisomerase
activity" evidence=IGI] InterPro:IPR001005 InterPro:IPR001241
InterPro:IPR013506 Pfam:PF00204 SMART:SM00433 SMART:SM00717
GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0005694
GO:GO:0007059 GO:GO:0003682 GO:GO:0006261 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0009330
GO:GO:0006265 GO:GO:0003918 eggNOG:COG0187 KO:K02470 EMBL:AY074291
EMBL:AY091322 EMBL:AY519549 IPI:IPI00536772 RefSeq:NP_196031.2
UniGene:At.33174 ProteinModelPortal:Q8VY11 SMR:Q8VY11
EnsemblPlants:AT5G04110.1 GeneID:830289 KEGG:ath:AT5G04110
TAIR:At5g04110 InParanoid:Q8VY11 Genevestigator:Q8VY11
Uniprot:Q8VY11
Length = 546
Score = 656 (236.0 bits), Expect = 2.3e-64, P = 2.3e-64
Identities = 138/252 (54%), Positives = 170/252 (67%)
Query: 274 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITID 333
L ++T++L ED+DP K EY +A GL E+V WLN DKKPLHDV+GFRK+++G TI+
Sbjct: 17 LRVQITVSLEMEDNDPNK----EYLYAKGLSEFVTWLNADKKPLHDVLGFRKEINGTTIN 72
Query: 334 LALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSG 393
+ALQWC D YS+ +LGYAN IRT+DGGT+I+GVKAS+TRTLNSL +KSK V+DKDI +
Sbjct: 73 IALQWCVDGYSNKILGYANGIRTMDGGTYIDGVKASITRTLNSLVEKSKLVEDKDIIFTE 132
Query: 394 EHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVXXXXX 453
EHV EGLTCI+SV VP PEFEGQT+ RLGNP VR++VDQSVQE L E ELHPDV
Sbjct: 133 EHVMEGLTCIVSVIVPKPEFEGQTQ-RLGNPNVREIVDQSVQECLMESFELHPDVFESIM 191
Query: 454 XXXXXXXXXXXXXXXXXXXVRQKSVLRS---SSLPGKLADCSSTTPEESEIFIVEGDSAG 510
+SV S+P KL + SS T SE FI G S+G
Sbjct: 192 SKSYNAYKTDLAVKRARDVYSSESVAMVCAIESIPMKLTNSSSET---SETFIGRGVSSG 248
Query: 511 GSAKQGRDRRFQ 522
G+AK DR F+
Sbjct: 249 GAAKHDSDRCFK 260
>UNIPROTKB|Q89M38 [details] [associations]
symbol:gyrB "DNA gyrase subunit B" species:224911
"Bradyrhizobium japonicum USDA 110" [GO:0003918 "DNA topoisomerase
type II (ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
InterPro:IPR001241 InterPro:IPR002288 InterPro:IPR003594
InterPro:IPR005737 InterPro:IPR013506 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986
Pfam:PF02518 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0005694 GO:GO:0007059 GO:GO:0006261 Gene3D:3.30.565.10
SUPFAM:SSF55874 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0009295 GO:GO:0006265
EMBL:BA000040 GenomeReviews:BA000040_GR GO:GO:0003918
SUPFAM:SSF56719 Gene3D:3.40.50.670 HOGENOM:HOG000075154 KO:K02622
ProtClustDB:PRK05559 OMA:GFIQSYC TIGRFAMs:TIGR01055 HSSP:P06982
RefSeq:NP_770995.1 ProteinModelPortal:Q89M38 GeneID:1052126
KEGG:bja:bll4355 PATRIC:21192268
BioCyc:BJAP224911:GJEJ-4381-MONOMER Uniprot:Q89M38
Length = 681
Score = 639 (230.0 bits), Expect = 1.4e-62, P = 1.4e-62
Identities = 171/474 (36%), Positives = 244/474 (51%)
Query: 77 YGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLA 136
Y + I+VLEGLE VR+RP MYIG T + LHHL E++DN++DEA AG+A+ I V L A
Sbjct: 38 YTAADIEVLEGLEPVRRRPGMYIGGTDEKALHHLFAEVIDNSMDEALAGHATFIGVELSA 97
Query: 137 DNSVSVADNGRGIPIDLHPA-TNKSALETVLTVLHAXXXXXXXXXXXXXXXXXXXXXXXX 195
D ++V DNGRGIPID HP KSALE ++ LH+
Sbjct: 98 DGFLTVTDNGRGIPIDPHPKFPKKSALEVIMCTLHSGGKFDSKVYETSGGLHGVGISVV- 156
Query: 196 XNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTT 255
NALS LEV V R Y + RG P L + +++ R+GTR+RF PD +F
Sbjct: 157 -NALSSLLEVEVARSQKLYRMTFERGHPKGKLE-DLGKINN--RRGTRVRFKPDTDIFGA 212
Query: 256 AIQFDHNTIAGRIRELAFLNPKLTIA-------LRKEDSDPEKNQYNEYFFAGGLEEYVQ 308
F + R A+L + I L+ D P + ++ F GGL++Y+
Sbjct: 213 KAAFKPQRLFKMTRSKAYLFGGVEIRWNCAPELLKGIDDVPAEATFH---FPGGLKDYLA 269
Query: 309 W-LNTDKKPLHDVVGFRKDVDGI--TIDLALQWCSDAYSDTMLG-YANSIRTIDGGTHIE 364
++ D D+ + +G + A+ W +DA D L Y N++ T DGGTH
Sbjct: 270 AAIHADTLVHPDIFSGKSGRNGAHGACEWAVAWTADA--DGFLSSYTNTVPTPDGGTHES 327
Query: 365 GVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNP 424
G++++L R L ++ K + S++ E V G ++SV V PEF+GQTK RL
Sbjct: 328 GLRSALLRGLKDHAERVGQGK-RASSITSEDVMVGAAVMLSVFVREPEFQGQTKDRLATA 386
Query: 425 EVRKVVDQSVQEYLTEYLELHPDVXXXXXXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSL 484
E +++V+Q++++ +L +P+ R K+ + L
Sbjct: 387 EAQRIVEQAMKDPFDHWLSGNPNQANKLLDFVIDRAEERLRRRQEKETAR-KTAGKKLRL 445
Query: 485 PGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQVIINPLQESIFAFASA 538
PGKLADCS E SE+FIVEGDSAGGSAKQ RDR+ Q ++ PL+ I ASA
Sbjct: 446 PGKLADCSDAGTEGSELFIVEGDSAGGSAKQARDRKTQAVL-PLRGKILNVASA 498
>TIGR_CMR|SPO_1253 [details] [associations]
symbol:SPO_1253 "DNA topoisomerase IV, B subunit"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=ISS]
[GO:0006265 "DNA topological change" evidence=ISS] [GO:0009340 "DNA
topoisomerase IV complex" evidence=ISS] InterPro:IPR001241
InterPro:IPR002288 InterPro:IPR003594 InterPro:IPR005737
InterPro:IPR013506 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986 Pfam:PF02518
PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387 SMART:SM00433
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524 GO:GO:0005694
EMBL:CP000031 GenomeReviews:CP000031_GR Gene3D:3.30.565.10
SUPFAM:SSF55874 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0006265 GO:GO:0003918
SUPFAM:SSF56719 Gene3D:3.40.50.670 HOGENOM:HOG000075154 KO:K02622
ProtClustDB:PRK05559 OMA:GFIQSYC TIGRFAMs:TIGR01055
RefSeq:YP_166498.1 ProteinModelPortal:Q5LU07 GeneID:3192730
KEGG:sil:SPO1253 PATRIC:23375809 Uniprot:Q5LU07
Length = 652
Score = 621 (223.7 bits), Expect = 1.2e-60, P = 1.2e-60
Identities = 160/466 (34%), Positives = 243/466 (52%)
Query: 76 TYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALL 135
TY + I+VLEGLE VRKRP MYIG T R LHH+V E+LDN++DEA AG+A+ IEV L
Sbjct: 13 TYDASSIEVLEGLEPVRKRPGMYIGGTDERALHHMVAEVLDNSMDEAVAGFANRIEVELH 72
Query: 136 ADNSVSVADNGRGIPIDLHPA-TNKSALETVLTVLHAXXXXXXXXXXXXXXXXXXXXXXX 194
AD +++V DNGRGIP+D HP KSALE +L LHA
Sbjct: 73 ADYALTVRDNGRGIPVDPHPKFPGKSALEVILCTLHAGGKFSGKAYQTSGGLHGVGASVV 132
Query: 195 XXNALSESLEVTVWRDGMEYHQKYSRGKPVTTLT-CHVLPVDSKDRQGTRIRFWPDKQVF 253
NALS+S+ V V RD + Y Q++SRG P+ + P +R+GT + F D+++F
Sbjct: 133 --NALSDSMVVQVARDKLLYEQRFSRGLPLGPIQQIGAAP----NRRGTTVTFHADEEIF 186
Query: 254 TTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWL--- 310
+F + IR A+L + I + D E + F GGL +Y++
Sbjct: 187 GHH-RFKPARLFKSIRSKAYLFSGVEIRWKSAIDDGETPTEATFHFPGGLADYLKETLGK 245
Query: 311 -NT-DKKPLHDVVGFRK--DVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGV 366
+T ++P V F + + G ++ A+ W + + + Y N++ T +GGTH G
Sbjct: 246 ASTYAEQPFAGTVDFTEKFNTPG-KVEWAINW-TPSRDGFIQSYCNTVPTPEGGTHEAGF 303
Query: 367 KASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEV 426
+++ + + + G+ K I+ + + G ++S + PEF GQTK RL E
Sbjct: 304 WSAILKGIRAYGELISNKKAAQITR--DDLLTGGCALVSCFIREPEFVGQTKDRLATVEA 361
Query: 427 RKVVDQSVQEYLTEYLELHPDVXXXXXXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPG 486
+++V+ +V+++ +L ++K+ + LPG
Sbjct: 362 QRLVEGAVRDHFDNWLAADTK-SAGAILDFLVLRAEERIRRRQEKETQRKTATKKLRLPG 420
Query: 487 KLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQVIINPLQESI 532
KL DCS+T+ E +E+FIVEGDSAGGSAK RDR+ Q ++ PL+ I
Sbjct: 421 KLVDCSATSREGTELFIVEGDSAGGSAKMARDRKTQALL-PLRGKI 465
>UNIPROTKB|A6VD80 [details] [associations]
symbol:parE "DNA topoisomerase IV, B subunit"
species:381754 "Pseudomonas aeruginosa PA7" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IBA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IBA]
[GO:0006265 "DNA topological change" evidence=IBA] [GO:0007059
"chromosome segregation" evidence=IBA] [GO:0009295 "nucleoid"
evidence=IBA] InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR005737 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005694 GO:GO:0007059
GO:GO:0006261 EMBL:CP000744 GenomeReviews:CP000744_GR
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0009295
GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719 eggNOG:COG0187
Gene3D:3.40.50.670 HOGENOM:HOG000075154 KO:K02622
ProtClustDB:PRK05559 TIGRFAMs:TIGR01055 RefSeq:YP_001351015.1
ProteinModelPortal:A6VD80 SMR:A6VD80 STRING:A6VD80 GeneID:5355906
KEGG:pap:PSPA7_5696 PATRIC:19832877 OMA:QARDKEF
BioCyc:PAER381754:GHMY-5702-MONOMER Uniprot:A6VD80
Length = 629
Score = 610 (219.8 bits), Expect = 1.7e-59, P = 1.7e-59
Identities = 150/459 (32%), Positives = 229/459 (49%)
Query: 76 TYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALL 135
TY ++ I+VL GL+ VRKRP MY +T P +HL E++DN+VDEA AG+A +++V L
Sbjct: 3 TYNADAIEVLSGLDPVRKRPGMYTDTTRP---NHLAQEVIDNSVDEALAGHAKSVQVILH 59
Query: 136 ADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAXXXXXXXXXXXXXXXXXXXXXXXX 195
DNS+ V D+GRG+P+D+HP +E +LT LHA
Sbjct: 60 QDNSLEVIDDGRGMPVDIHPEEGVPGVELILTKLHAGGKFSNKNYQFSGGLHGVGISVV- 118
Query: 196 XNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTT 255
NALS +EV V RD EY ++ G T L V+ + GT + FWPD + F +
Sbjct: 119 -NALSTRVEVRVKRDANEYRMTFADGFKDTDL--EVIGTVGRRNTGTSVHFWPDPKYFDS 175
Query: 256 AIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKK 315
A +F + + ++ A L P L++ D + E+ F GL Y+ +
Sbjct: 176 A-KFSVSRLKHVLKAKAVLCPGLSVVFE----DKNTGERVEWHFEDGLRSYLTDAVAELP 230
Query: 316 PLHDVVGFRKDVDGI--TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRT 373
L D F +++G + AL W + Y N I T GGTH+ G++ L
Sbjct: 231 RLPDEP-FCGNLEGSKEAVSWALLWLPEGGESVQESYVNLIPTAQGGTHVNGLRQGLLDA 289
Query: 374 LNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQS 433
+ + + + + + L+ E V E + ++S+++ P+F GQTK RL + E V
Sbjct: 290 MREFCE-FRNLLPRGVKLAPEDVWERIAFVLSMKMQEPQFSGQTKERLSSREAAAFVSGV 348
Query: 434 VQEYLTEYLELHPDVXXXXXXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGKLADCSS 493
V++ + +L H ++ V +K + + +LPGKLADC+
Sbjct: 349 VKDAFSLWLNEHAEIGLQLAELAISNAGRRLKAGKK---VERKKITQGPALPGKLADCAG 405
Query: 494 TTPEESEIFIVEGDSAGGSAKQGRDRRFQVIINPLQESI 532
P +E+F+VEGDSAGGSAKQ RD+ FQ I+ PL+ I
Sbjct: 406 QEPMRAELFLVEGDSAGGSAKQARDKEFQAIM-PLRGKI 443
>TIGR_CMR|CBU_0064 [details] [associations]
symbol:CBU_0064 "DNA topoisomerase IV, B subunit"
species:227377 "Coxiella burnetii RSA 493" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=ISS]
[GO:0006265 "DNA topological change" evidence=ISS] [GO:0009340 "DNA
topoisomerase IV complex" evidence=ISS] InterPro:IPR001241
InterPro:IPR002288 InterPro:IPR003594 InterPro:IPR005737
InterPro:IPR013506 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986 Pfam:PF02518
PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387 SMART:SM00433
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524 GO:GO:0005694
EMBL:AE016828 GenomeReviews:AE016828_GR Gene3D:3.30.565.10
SUPFAM:SSF55874 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0006265 GO:GO:0003918
SUPFAM:SSF56719 Gene3D:3.40.50.670 HOGENOM:HOG000075154 KO:K02622
ProtClustDB:PRK05559 TIGRFAMs:TIGR01055 RefSeq:NP_819117.2
ProteinModelPortal:Q83F84 PRIDE:Q83F84 GeneID:1207934
KEGG:cbu:CBU_0064 PATRIC:17928803 OMA:GNVCVAR
BioCyc:CBUR227377:GJ7S-66-MONOMER Uniprot:Q83F84
Length = 641
Score = 604 (217.7 bits), Expect = 7.3e-59, P = 7.3e-59
Identities = 155/463 (33%), Positives = 236/463 (50%)
Query: 75 KTYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVAL 134
K Y +E I+VL GLE V++RP MY ++ P +HL +E +DN+VDEA AG+A N+EV L
Sbjct: 14 KGYTAEAIEVLSGLEPVKRRPGMYTDTSRP---NHLAHEAIDNSVDEAIAGFAQNVEVIL 70
Query: 135 LADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAXXXXXXXXXXXXXXXXXXXXXXX 194
D S+ V D+GRG+PID+HP + +E +LT LHA
Sbjct: 71 YKDGSLEVIDDGRGMPIDVHPEHKLTGVELILTRLHAGAKFSTKTYEYSGGLHGVGISVV 130
Query: 195 XXNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDS--KDRQGTRIRFWPDKQV 252
NALS+ L V V +DG Y ++ G+ + L PV S K GT I FWPD
Sbjct: 131 --NALSKKLTVQVKKDGKIYQMDFAHGEKTSKLR----PVGSCNKSESGTSIHFWPDSHY 184
Query: 253 FTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNT 312
F + ++F + + +R A L P LT+ E++ Q ++++A GL+ Y+
Sbjct: 185 FDS-VKFGVSALKHTMRAKAVLCPGLTVHFIDENT----GQRLQWYYAEGLKTYLADSLR 239
Query: 313 DKKPLHDV--VG-FRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKAS 369
D++ L + VG F + + D AL W + Y N I T GGTH+ G++
Sbjct: 240 DRERLPEEPWVGSFSGETE--KADWALAWLPEDDEGIRESYVNLIPTPQGGTHVNGLRTG 297
Query: 370 LTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKV 429
L + + K + +++ L+ E + E ++SV++ P+F GQTK RL + +
Sbjct: 298 LLEAMREFCEIHKLLP-RNLKLASEDIWEQCHYVLSVKMQEPQFSGQTKERLTSRQSAVF 356
Query: 430 VDQSVQEYLTEYLELHPDVXXXXXXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGKLA 489
V V++ + +L + ++ + +K V +LPGKLA
Sbjct: 357 VSGVVKDAFSLWLNHNVEIGKTLAELVIANAQKRLRMSKK---IERKKVTTGPALPGKLA 413
Query: 490 DCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQVIINPLQESI 532
DC + P + E+F+VEGDSAGGSAKQ RD+ FQ I+ PL+ I
Sbjct: 414 DCILSDPMQCELFLVEGDSAGGSAKQARDKNFQAIM-PLRGKI 455
>TIGR_CMR|SO_3899 [details] [associations]
symbol:SO_3899 "DNA topoisomerase IV, B subunit"
species:211586 "Shewanella oneidensis MR-1" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=ISS]
[GO:0006265 "DNA topological change" evidence=ISS] [GO:0009340 "DNA
topoisomerase IV complex" evidence=ISS] InterPro:IPR001241
InterPro:IPR002288 InterPro:IPR003594 InterPro:IPR005737
InterPro:IPR013506 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986 Pfam:PF02518
PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387 SMART:SM00433
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524 GO:GO:0005694
EMBL:AE014299 GenomeReviews:AE014299_GR Gene3D:3.30.565.10
SUPFAM:SSF55874 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0006265 GO:GO:0003918
SUPFAM:SSF56719 Gene3D:3.40.50.670 HOGENOM:HOG000075154 KO:K02622
ProtClustDB:PRK05559 TIGRFAMs:TIGR01055 HSSP:P06982 OMA:QARDKEF
RefSeq:NP_719430.1 ProteinModelPortal:Q8EAK3 SMR:Q8EAK3
GeneID:1171539 KEGG:son:SO_3899 PATRIC:23527480 Uniprot:Q8EAK3
Length = 628
Score = 602 (217.0 bits), Expect = 1.2e-58, P = 1.2e-58
Identities = 153/463 (33%), Positives = 229/463 (49%)
Query: 73 VSKTYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEV 132
++ Y S+ I+VL GL+ V++RP MY +T P +HL E++DN+VDEA AG+A+ IEV
Sbjct: 1 MTNQYTSDAIEVLNGLDPVKRRPGMYTDTTRP---NHLGQEVIDNSVDEALAGHATKIEV 57
Query: 133 ALLADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAXXXXXXXXXXXXXXXXXXXXX 192
L DNS+ V D+GRG+P+D+HP +E +LT LHA
Sbjct: 58 VLHTDNSLEVTDDGRGMPVDIHPEEGIPGVELILTKLHAGGKFSNKNYQFSGGLHGVGIS 117
Query: 193 XXXXNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQV 252
NALS +EVTV RDG Y + G V L V + GTR+ FWPD
Sbjct: 118 VV--NALSRRVEVTVRRDGQVYDIAFENGFKVEELK--VTGTCGRRNTGTRVHFWPDTSY 173
Query: 253 FTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNT 312
F + F ++ + +R A L P L I + + N+ +E+++ GL +Y++
Sbjct: 174 FDSP-NFSNSKLIYLLRAKAVLCPGLRIKFTNKHT----NEVHEWYYESGLTDYLKAAVG 228
Query: 313 DK--KPLHDVVG-FRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKAS 369
D P +G F+ ++ D A+ W + Y N I T GGTH+ G +
Sbjct: 229 DNIMLPEEPFIGSFKGQIEAA--DWAITWLPEGGESINESYVNLIPTPLGGTHVNGFRQG 286
Query: 370 LTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKV 429
L ++ + + + I LS E + + I+SV++ +P+F GQTK +L + +
Sbjct: 287 LLESMREFCEFRNLIP-RGIKLSPEDIWDRAAFILSVKMQDPQFAGQTKEKLSSRQSSAF 345
Query: 430 VDQSVQEYLTEYLELHPDVXXXXXXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGKLA 489
V V++ + +L + ++ V +K V +LPGKL
Sbjct: 346 VSGIVRDAFSLWLNSNTELAESLAEMCINNAQKRLKAAKK---VARKKVTSGPALPGKLT 402
Query: 490 DCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQVIINPLQESI 532
DCS P E+F+VEGDSAGGSAKQ RDR FQ I+ PL+ I
Sbjct: 403 DCSGQDPMRGELFLVEGDSAGGSAKQARDREFQAIM-PLRGKI 444
>UNIPROTKB|P20083 [details] [associations]
symbol:parE species:83333 "Escherichia coli K-12"
[GO:0030541 "plasmid partitioning" evidence=IDA] [GO:0051276
"chromosome organization" evidence=IMP] [GO:0007062 "sister
chromatid cohesion" evidence=IMP] [GO:0005694 "chromosome"
evidence=IEA] [GO:0009295 "nucleoid" evidence=IBA] [GO:0046677
"response to antibiotic" evidence=IEA] [GO:0016853 "isomerase
activity" evidence=IEA] [GO:0006265 "DNA topological change"
evidence=IEA;IBA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003918 "DNA topoisomerase type II (ATP-hydrolyzing) activity"
evidence=IEA;IBA] [GO:0003916 "DNA topoisomerase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IBA]
InterPro:IPR001241 InterPro:IPR002288 InterPro:IPR003594
InterPro:IPR005737 InterPro:IPR013506 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986
Pfam:PF02518 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0005694 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0046677 GO:GO:0006261 EMBL:U28377
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0009295
GO:GO:0007062 GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719
eggNOG:COG0187 Gene3D:3.40.50.670 PROSITE:PS50880
HOGENOM:HOG000075154 GO:GO:0030541 KO:K02622 ProtClustDB:PRK05559
EMBL:M58409 EMBL:L22026 PIR:D65090 RefSeq:NP_417502.1
RefSeq:YP_491222.1 PDB:1S14 PDB:1S16 PDB:3FV5 PDBsum:1S14
PDBsum:1S16 PDBsum:3FV5 ProteinModelPortal:P20083 SMR:P20083
DIP:DIP-10441N IntAct:P20083 MINT:MINT-1223307 PRIDE:P20083
EnsemblBacteria:EBESCT00000001166 EnsemblBacteria:EBESCT00000016957
GeneID:12933399 GeneID:947501 KEGG:ecj:Y75_p2956 KEGG:eco:b3030
PATRIC:32121470 EchoBASE:EB0681 EcoGene:EG10687 OMA:GFIQSYC
BioCyc:EcoCyc:EG10687-MONOMER BioCyc:ECOL316407:JW2998-MONOMER
BindingDB:P20083 EvolutionaryTrace:P20083 Genevestigator:P20083
HAMAP:MF_00938 TIGRFAMs:TIGR01055 Uniprot:P20083
Length = 630
Score = 597 (215.2 bits), Expect = 4.0e-58, P = 4.0e-58
Identities = 152/461 (32%), Positives = 234/461 (50%)
Query: 73 VSKTYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEV 132
+++TY ++ I+VL GLE VR+RP MY +T P +HL E++DN+VDEA AG+A ++V
Sbjct: 1 MTQTYNADAIEVLTGLEPVRRRPGMYTDTTRP---NHLGQEVIDNSVDEALAGHAKRVDV 57
Query: 133 ALLADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAXXXXXXXXXXXXXXXXXXXXX 192
L AD S+ V D+GRG+P+D+HP A+E +L LHA
Sbjct: 58 ILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117
Query: 193 XXXXNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQV 252
NALS+ +EV V RDG Y+ + G+ V L V+ K GT + FWPD+
Sbjct: 118 VV--NALSKRVEVNVRRDGQVYNIAFENGEKVQDL--QVVGTCGKRNTGTSVHFWPDETF 173
Query: 253 FTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNT 312
F + +F + + ++ A L P + I + E ++ E+ + L E V L T
Sbjct: 174 FDSP-RFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPT 232
Query: 313 -DKKPLHDVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLT 371
+KP + F D + + D AL W + Y N I T+ GGTH+ G++ L
Sbjct: 233 LPEKPF--IGNFAGDTEAV--DWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLL 288
Query: 372 RTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVD 431
+ + + + + + LS E + + ++SV++ +P+F GQTK RL + + V
Sbjct: 289 DAMREFCEY-RNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVS 347
Query: 432 QSVQEYLTEYLELHPDVXXXXXXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGKLADC 491
V++ L L+ +V VR+K + +LPGKLADC
Sbjct: 348 GVVKDAFI--LWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKK-LTSGPALPGKLADC 404
Query: 492 SSTTPEESEIFIVEGDSAGGSAKQGRDRRFQVIINPLQESI 532
++ +E+F+VEGDSAGGSAKQ RDR +Q I+ PL+ I
Sbjct: 405 TAQDLNRTELFLVEGDSAGGSAKQARDREYQAIM-PLKGKI 444
>UNIPROTKB|Q9KPD9 [details] [associations]
symbol:VC_2431 "Topoisomerase IV, subunit B" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=ISS]
[GO:0006260 "DNA replication" evidence=ISS] [GO:0006265 "DNA
topological change" evidence=ISS] [GO:0007059 "chromosome
segregation" evidence=ISS] [GO:0009340 "DNA topoisomerase IV
complex" evidence=ISS] InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR005737 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005694 GO:GO:0007059
GO:GO:0006260 EMBL:AE003852 GenomeReviews:AE003852_GR
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0006265
GO:GO:0003918 SUPFAM:SSF56719 Gene3D:3.40.50.670 KO:K02622
ProtClustDB:PRK05559 TIGRFAMs:TIGR01055 HSSP:P06982 OMA:GNVCVAR
PIR:G82078 RefSeq:NP_232061.1 ProteinModelPortal:Q9KPD9 SMR:Q9KPD9
DNASU:2612973 GeneID:2612973 KEGG:vch:VC2431 PATRIC:20083881
GO:GO:0009340 Uniprot:Q9KPD9
Length = 626
Score = 582 (209.9 bits), Expect = 1.6e-56, P = 1.6e-56
Identities = 151/463 (32%), Positives = 225/463 (48%)
Query: 73 VSKTYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEV 132
+++ Y + I+VL GLE VR+RP MY +T P +HL E++DN+VDEA AGYAS I+V
Sbjct: 1 MTEQYNAGAIEVLNGLEPVRRRPGMYTDTTRP---NHLGQEVIDNSVDEALAGYASKIQV 57
Query: 133 ALLADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAXXXXXXXXXXXXXXXXXXXXX 192
L AD S+ V D+GRG+P+D+HP S +E +L LHA
Sbjct: 58 ILHADQSLEVIDDGRGMPVDIHPEEKVSGVELILCKLHAGGKFSNKNYQFSGGLHGVGIS 117
Query: 193 XXXXNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQV 252
NALS+ +EV V RDG Y + G VT LT V + GT + FWPD +
Sbjct: 118 VV--NALSKRVEVAVRRDGQVYEIAFEHGDKVTELT--VTGTCGRRNTGTSVHFWPDTKY 173
Query: 253 FTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQW--L 310
F + F + + +R A L P L I +D N + + + GL++Y+
Sbjct: 174 FDSP-NFSVSRLINNLRAKAVLCPGLEIIF----TDKVNNNEHRWLYEDGLKDYLAEGVK 228
Query: 311 NTDKKPLHDVVG-FRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKAS 369
P G F + T A+ W + Y N I T GGTH+ G++
Sbjct: 229 GYTLLPEEPFTGEFTAQTEAAT--WAVIWLPEGGELITESYVNLIPTAQGGTHVNGLRQG 286
Query: 370 LTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKV 429
L + + + + + + L+GE V + ++S+++ +P+F GQTK RL + +
Sbjct: 287 LLDAMREFCE-FRNLLPRGVKLTGEDVFDRCAYVLSIKMQDPQFAGQTKERLSSRQSAAF 345
Query: 430 VDQSVQEYLTEYLELHPDVXXXXXXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGKLA 489
V V++ + +L P + VR+K + +LPGKL
Sbjct: 346 VSGVVKDAFSLWLNEKPQLAEQLAEVCIANAHSRMRASKKV--VRKK-IASGPALPGKLT 402
Query: 490 DCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQVIINPLQESI 532
DC+ +E+F+VEGDSAGGSAKQ RDR FQ ++ PL+ I
Sbjct: 403 DCTVQDLNRTELFLVEGDSAGGSAKQARDREFQAVM-PLRGKI 444
>TIGR_CMR|VC_2431 [details] [associations]
symbol:VC_2431 "topoisomerase IV, subunit B" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0003918 "DNA topoisomerase
type II (ATP-hydrolyzing) activity" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] [GO:0006265 "DNA topological change"
evidence=ISS] [GO:0007059 "chromosome segregation" evidence=ISS]
[GO:0009340 "DNA topoisomerase IV complex" evidence=ISS]
InterPro:IPR001241 InterPro:IPR002288 InterPro:IPR003594
InterPro:IPR005737 InterPro:IPR013506 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986
Pfam:PF02518 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0005694 GO:GO:0007059 GO:GO:0006260 EMBL:AE003852
GenomeReviews:AE003852_GR Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719
Gene3D:3.40.50.670 KO:K02622 ProtClustDB:PRK05559
TIGRFAMs:TIGR01055 HSSP:P06982 OMA:GNVCVAR PIR:G82078
RefSeq:NP_232061.1 ProteinModelPortal:Q9KPD9 SMR:Q9KPD9
DNASU:2612973 GeneID:2612973 KEGG:vch:VC2431 PATRIC:20083881
GO:GO:0009340 Uniprot:Q9KPD9
Length = 626
Score = 582 (209.9 bits), Expect = 1.6e-56, P = 1.6e-56
Identities = 151/463 (32%), Positives = 225/463 (48%)
Query: 73 VSKTYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEV 132
+++ Y + I+VL GLE VR+RP MY +T P +HL E++DN+VDEA AGYAS I+V
Sbjct: 1 MTEQYNAGAIEVLNGLEPVRRRPGMYTDTTRP---NHLGQEVIDNSVDEALAGYASKIQV 57
Query: 133 ALLADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAXXXXXXXXXXXXXXXXXXXXX 192
L AD S+ V D+GRG+P+D+HP S +E +L LHA
Sbjct: 58 ILHADQSLEVIDDGRGMPVDIHPEEKVSGVELILCKLHAGGKFSNKNYQFSGGLHGVGIS 117
Query: 193 XXXXNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQV 252
NALS+ +EV V RDG Y + G VT LT V + GT + FWPD +
Sbjct: 118 VV--NALSKRVEVAVRRDGQVYEIAFEHGDKVTELT--VTGTCGRRNTGTSVHFWPDTKY 173
Query: 253 FTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQW--L 310
F + F + + +R A L P L I +D N + + + GL++Y+
Sbjct: 174 FDSP-NFSVSRLINNLRAKAVLCPGLEIIF----TDKVNNNEHRWLYEDGLKDYLAEGVK 228
Query: 311 NTDKKPLHDVVG-FRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKAS 369
P G F + T A+ W + Y N I T GGTH+ G++
Sbjct: 229 GYTLLPEEPFTGEFTAQTEAAT--WAVIWLPEGGELITESYVNLIPTAQGGTHVNGLRQG 286
Query: 370 LTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKV 429
L + + + + + + L+GE V + ++S+++ +P+F GQTK RL + +
Sbjct: 287 LLDAMREFCE-FRNLLPRGVKLTGEDVFDRCAYVLSIKMQDPQFAGQTKERLSSRQSAAF 345
Query: 430 VDQSVQEYLTEYLELHPDVXXXXXXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGKLA 489
V V++ + +L P + VR+K + +LPGKL
Sbjct: 346 VSGVVKDAFSLWLNEKPQLAEQLAEVCIANAHSRMRASKKV--VRKK-IASGPALPGKLT 402
Query: 490 DCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQVIINPLQESI 532
DC+ +E+F+VEGDSAGGSAKQ RDR FQ ++ PL+ I
Sbjct: 403 DCTVQDLNRTELFLVEGDSAGGSAKQARDREFQAVM-PLRGKI 444
>UNIPROTKB|Q8A3C1 [details] [associations]
symbol:BT_3033 "DNA topoisomerase IV subunit B"
species:226186 "Bacteroides thetaiotaomicron VPI-5482" [GO:0003918
"DNA topoisomerase type II (ATP-hydrolyzing) activity"
evidence=IBA] [GO:0006261 "DNA-dependent DNA replication"
evidence=IBA] [GO:0006265 "DNA topological change" evidence=IBA]
[GO:0007059 "chromosome segregation" evidence=IBA] [GO:0009295
"nucleoid" evidence=IBA] InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR013506 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986
Pfam:PF02518 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0005694 GO:GO:0007059 GO:GO:0006261 Gene3D:3.30.565.10
SUPFAM:SSF55874 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 EMBL:AE015928
GenomeReviews:AE015928_GR GO:GO:0009295 GO:GO:0006265 GO:GO:0003918
SUPFAM:SSF56719 Gene3D:3.40.50.670 HOGENOM:HOG000075156 KO:K02622
ProtClustDB:PRK05559 HSSP:P06982 OMA:VFESQTK RefSeq:NP_811945.1
ProteinModelPortal:Q8A3C1 GeneID:1074020 KEGG:bth:BT_3033
PATRIC:21061047 BioCyc:BTHE226186:GJXV-3097-MONOMER Uniprot:Q8A3C1
Length = 625
Score = 178 (67.7 bits), Expect = 7.3e-22, Sum P(2) = 7.3e-22
Identities = 63/216 (29%), Positives = 93/216 (43%)
Query: 70 ENPVSKTYGSEQIQVLEGLEAVRKRPAMYIGSTGPR-----GLHHLVYEILDNAVDEAQA 124
+N + Y + I+ L +E VR RP MYIG G G++ L+ E++DN++DE +
Sbjct: 10 DNNNAVEYTDDNIRHLSDMEHVRTRPGMYIGRLGDGAHAEDGIYVLLKEVIDNSIDEFKM 69
Query: 125 GYASNIEVALLADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAXXXXXXXXXXXXX 184
IE+ + + VSV D GRGIP + L ++VL+
Sbjct: 70 QAGKKIEITVEENLRVSVRDYGRGIP--------QGKLVEAVSVLNTGGKYDSKAFKKSV 121
Query: 185 XXXXXXXXXXXXNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRI 244
NALS EV +RDG +S+G T +T D+++ GT I
Sbjct: 122 GLNGVGVKAV--NALSSRFEVRSYRDGKVRIATFSKGNLQTDVT-----QDTEEDNGTFI 174
Query: 245 RFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTI 280
F PD +F F I +R +LN L I
Sbjct: 175 FFEPDNTLFVNYC-FKPEFIETMLRNYTYLNTGLAI 209
Score = 156 (60.0 bits), Expect = 7.3e-22, Sum P(2) = 7.3e-22
Identities = 58/214 (27%), Positives = 84/214 (39%)
Query: 329 GITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKD 388
G I++A Y + + N T GGTH K + RT+ K+ D
Sbjct: 243 GEDIEIAFTHTGQ-YGEEYYSFVNGQHTTQGGTHQSAFKEHIARTIKEFFNKNMDYTD-- 299
Query: 389 ISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPE-------VRKVVDQSVQEYLTEY 441
+R GL I+V V P FE QTKT+LG+ V K V ++ + +
Sbjct: 300 -------IRNGLVAAIAVNVEEPIFESQTKTKLGSTNMTPGGVTVNKYVGDFIKLEVDNF 352
Query: 442 LELHPDVXXXXXXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPG-KLADCSS--TTP-- 496
L + DV R+++ + ++L KL DC P
Sbjct: 353 LHKNADVAEVMQQKIQESEKERKAIAGVTKLARERA--KKANLHNRKLRDCRIHLNDPKG 410
Query: 497 ----EESEIFIVEGDSAGGSAKQGRDRRFQVIIN 526
E+S IFI EGDSA GS + RD Q + +
Sbjct: 411 KGMEEDSCIFITEGDSASGSITKSRDVNTQAVFS 444
>UNIPROTKB|Q3KL33 [details] [associations]
symbol:gyrB_2 "DNA gyrase subunit B" species:315277
"Chlamydia trachomatis A/HAR-13" [GO:0003918 "DNA topoisomerase
type II (ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
InterPro:IPR001241 InterPro:IPR002288 InterPro:IPR003594
InterPro:IPR013506 InterPro:IPR013759 InterPro:IPR013760
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418 SMART:SM00387
SMART:SM00433 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0005694 GO:GO:0007059 GO:GO:0006261 Gene3D:3.30.565.10
SUPFAM:SSF55874 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0009295 EMBL:CP000051
GenomeReviews:CP000051_GR GO:GO:0006265 GO:GO:0003918
SUPFAM:SSF56719 eggNOG:COG0187 KO:K02470 Gene3D:3.40.50.670
HOGENOM:HOG000075156 ProtClustDB:PRK05559 RefSeq:YP_328487.1
ProteinModelPortal:Q3KL33 STRING:Q3KL33 GeneID:3687725
KEGG:cta:CTA_0718 PATRIC:32023360 OMA:VFESQTK
BioCyc:CTRA315277:GI4C-739-MONOMER Uniprot:Q3KL33
Length = 605
Score = 173 (66.0 bits), Expect = 2.4e-21, Sum P(2) = 2.4e-21
Identities = 55/209 (26%), Positives = 90/209 (43%)
Query: 333 DLALQWC-SDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISL 391
DLA + ++ S+ + N T DGGTH+ K + + +N K+
Sbjct: 234 DLAFLFSHTETSSEQYFSFVNGQETTDGGTHLVAFKEGIVKGVNEFFGKN---------F 284
Query: 392 SGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVXXX 451
S + +REGL I++++ +P FE QTK +LGN +R + + V+E + L+ +P
Sbjct: 285 SSQDIREGLAGCIAIKIASPIFESQTKNKLGNTNIRAELAKRVKEAVLSSLKKNPSSAER 344
Query: 452 XXXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGKLADC------SSTTPEESEIFIVE 505
++ K +P KL DC +S + S IFI E
Sbjct: 345 IQEKIKLNEKTRKNAQFLKQELKDKQKKLHYKIP-KLRDCKFHLTDNSLYGKNSSIFITE 403
Query: 506 GDSAGGSAKQGRDRRFQVIINPLQESIFA 534
G+SA S R NPL +++F+
Sbjct: 404 GESASASILASR--------NPLTQAVFS 424
Score = 156 (60.0 bits), Expect = 2.4e-21, Sum P(2) = 2.4e-21
Identities = 58/217 (26%), Positives = 88/217 (40%)
Query: 75 KT-YGSEQIQVLEGLEAVRKRPAMYIGSTGPR-----GLHHLVYEILDNAVDEAQAGYAS 128
KT Y I L L+ +R R MYIG G G++ L E++DNA+DE GY
Sbjct: 4 KTAYSESSIISLASLDHIRLRAGMYIGRLGDGSQAEDGIYTLFKEVVDNAIDEFVMGYGH 63
Query: 129 NIEVALLADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAXXXXXXXXXXXXXXXXX 188
I + A + +S+ D GRGIP+ ++ V +
Sbjct: 64 TIHITGDA-HELSIRDEGRGIPLG-------KVIDCVSKI---NTGAKYTQDVFHFSVGL 112
Query: 189 XXXXXXXXNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWP 248
NALS+ V R+ +S+G + H ++D GT + F P
Sbjct: 113 NGVGLKAVNALSQHFSVRSVRNKKFLKASFSKG-----ILLHTEQGATQDPDGTEVVFSP 167
Query: 249 DKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKE 285
D ++F F + +IR+ +L+P LTI E
Sbjct: 168 DHELFEN-FSFQVEFLKKKIRQYTYLHPGLTIIYNGE 203
>DICTYBASE|DDB_G0279737 [details] [associations]
symbol:top2mt "DNA topoisomerase II" species:44689
"Dictyostelium discoideum" [GO:0006265 "DNA topological change"
evidence=IEA;IC;IBA] [GO:0005524 "ATP binding" evidence=IEA;ISS]
[GO:0003918 "DNA topoisomerase type II (ATP-hydrolyzing) activity"
evidence=IEA;ISS;IBA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0006259 "DNA metabolic process" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] [GO:0009295 "nucleoid" evidence=IBA]
[GO:0044774 "mitotic DNA integrity checkpoint" evidence=IBA]
[GO:0007059 "chromosome segregation" evidence=IBA] [GO:0006312
"mitotic recombination" evidence=IBA] [GO:0006261 "DNA-dependent
DNA replication" evidence=IBA] [GO:0000819 "sister chromatid
segregation" evidence=IBA] [GO:0000795 "synaptonemal complex"
evidence=IBA] [GO:0000712 "resolution of meiotic recombination
intermediates" evidence=IBA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0016853 "isomerase activity" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0003916 "DNA
topoisomerase activity" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR001241 InterPro:IPR002205
InterPro:IPR003594 InterPro:IPR013506 InterPro:IPR013757
InterPro:IPR013758 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521 Pfam:PF02518
PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387 SMART:SM00433
SMART:SM00434 dictyBase:DDB_G0279737 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005739 GO:GO:0005524
GenomeReviews:CM000152_GR GO:GO:0006261 Gene3D:3.30.565.10
SUPFAM:SSF55874 EMBL:AAFI02000032 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0000819 GO:GO:0006312
GO:GO:0070683 GO:GO:0000712 GO:GO:0000795 GO:GO:0006265
GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
eggNOG:COG0187 Gene3D:3.40.50.670 PROSITE:PS50880 KO:K03164
EMBL:D82024 PIR:T30577 RefSeq:XP_641531.1 ProteinModelPortal:P90520
STRING:P90520 EnsemblProtists:DDB0214907 GeneID:8622204
KEGG:ddi:DDB_G0279737 OMA:MQDRRER ProtClustDB:PTZ00108
Uniprot:P90520
Length = 1284
Score = 201 (75.8 bits), Expect = 2.3e-12, P = 2.3e-12
Identities = 83/347 (23%), Positives = 150/347 (43%)
Query: 93 KRPAMYIG---STGPRGLHHLVYEILDNAVDEAQA-GYASNIEVALLA-DNSVSVADNGR 147
K+P YI +T GL + EIL NA D + S I+V + +NS+S+ ++G+
Sbjct: 156 KKPLTYIHPIKATYIPGLLKIYDEILVNAADNKKRDSKMSFIKVEINPNENSISIMNDGK 215
Query: 148 GIPIDLHPATNKSALETVLTVLHAXXXXXXXXXXXXXXXXXXXXXXXXXNALSESLEVTV 207
GIP+ +H N +E V+ L + + ++E
Sbjct: 216 GIPVVMHQTENCYVVEMVMGNLMSGSNFNDSELKVVGGRNGFGAKLTNIFSKEFTVETVD 275
Query: 208 WRDGMEYHQKYS-----RGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHN 262
G +Y Q++S R +P+ T P+ + T+I F PD + F +D N
Sbjct: 276 KSSGKKYFQRWSNNMGDRSEPIIT------PIGEGESDYTKITFKPDLEKFKIKSLWDDN 329
Query: 263 TIA---GRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD 319
+ R+ ++A N +L + L + ++ YN F ++ Y LN K +
Sbjct: 330 ILQLMERRLYDIAGCNTELMVTL-----NGKRLNYN---FQSYVKLYEHHLNNSTKREDN 381
Query: 320 VVGFRKDVDGITIDLALQW-----CSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTL 374
+R++ +++ +W S+ T + + NSI T+ GGTH+ + + R +
Sbjct: 382 EEQYREESFEFG-EISPRWKIGIGLSETGQFTQVSFVNSINTVKGGTHVNFLADQIVRYV 440
Query: 375 NSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRL 421
G+K K K D+ + +++ L ++ V NP F+ Q+K L
Sbjct: 441 ---GEKLKK-KHSDLEIRPMNIKHHLALFVNCLVDNPSFDSQSKETL 483
>CGD|CAL0005199 [details] [associations]
symbol:TOP2 species:5476 "Candida albicans" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IGI;ISS]
[GO:0036244 "cellular response to neutral pH" evidence=IMP]
[GO:0009267 "cellular response to starvation" evidence=IMP]
[GO:0030447 "filamentous growth" evidence=IMP] [GO:0097047 "DNA
replication termination region" evidence=IEA] [GO:0000795
"synaptonemal complex" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0036170 "filamentous growth of a population of
unicellular organisms in response to starvation" evidence=IMP]
[GO:0036178 "filamentous growth of a population of unicellular
organisms in response to neutral pH" evidence=IMP] [GO:0006406
"mRNA export from nucleus" evidence=IEA] [GO:0006333 "chromatin
assembly or disassembly" evidence=IEA] [GO:0044774 "mitotic DNA
integrity checkpoint" evidence=IEA] [GO:0000712 "resolution of
meiotic recombination intermediates" evidence=IEA] [GO:0097046
"replication fork progression beyond termination site"
evidence=IEA] [GO:0031055 "chromatin remodeling at centromere"
evidence=IEA] [GO:0006271 "DNA strand elongation involved in DNA
replication" evidence=IEA] [GO:0007076 "mitotic chromosome
condensation" evidence=IEA] [GO:0000019 "regulation of mitotic
recombination" evidence=IEA] [GO:0042790 "transcription of nuclear
large rRNA transcript from RNA polymerase I promoter" evidence=IEA]
[GO:0006265 "DNA topological change" evidence=IEA]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 Pfam:PF00204 Pfam:PF00521
Pfam:PF02518 PRINTS:PR00418 SMART:SM00387 SMART:SM00433
SMART:SM00434 CGD:CAL0005199 Pfam:PF01751 InterPro:IPR006171
GO:GO:0005524 GO:GO:0005694 GO:GO:0036244 GO:GO:0036178
GO:GO:0009267 Gene3D:3.30.565.10 SUPFAM:SSF55874 GO:GO:0036170
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 Gene3D:3.30.1360.40 InterPro:IPR024946
GO:GO:0006265 EMBL:AACQ01000084 EMBL:AACQ01000083 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
Gene3D:3.40.50.670 KO:K03164 RefSeq:XP_715530.1 RefSeq:XP_715586.1
ProteinModelPortal:Q5A1E7 SMR:Q5A1E7 STRING:Q5A1E7 GeneID:3642722
GeneID:3642777 KEGG:cal:CaO19.10391 KEGG:cal:CaO19.2873
Uniprot:Q5A1E7
Length = 1461
Score = 157 (60.3 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 78/324 (24%), Positives = 129/324 (39%)
Query: 106 GLHHLVYEILDNAVD-EAQAGYASNIEVALLADNSV-SVADNGRGIPIDLHPATNKSALE 163
GL+ + EIL NA D + + NI V + A+N++ V ++G+GIPI++H N E
Sbjct: 109 GLYKIFDEILVNAADNKIRDPSMKNIRVKIDAENNIIEVMNDGKGIPIEMHTKENMYIPE 168
Query: 164 TVLTVLHAXXXXXXXXXXXXXXXXXXXXXXXXXNALSESLEVTVWRDGMEYHQKYSRGKP 223
+ L N S EV M K S
Sbjct: 169 LIFGNL--LTSSNYDDDQKKVTGGRNGFGAKLCNIFSTQFEVETADLNMGKLYKQSWTNN 226
Query: 224 VTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALR 283
++ ++ + ++ T+I F PD F D N + +R + L ++
Sbjct: 227 MSNVSKPKITTLRPKKEYTKITFRPDLSKFDMDC-LD-NDLLSVLRRRVY---DLCGTVK 281
Query: 284 KEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITIDLAL-QW-CSD 341
+ + N F G +E YV+ + G K+ I ++ +W +
Sbjct: 282 NCNIYLNDKRLNISSFKGYVEMYVKAIKERSPEPEPQDGTIKNFTTIVHEVFNDRWEVAF 341
Query: 342 AYSD---TMLGYANSIRTIDGGTHIEGVKASLTRTL-NSLGKKSKTVKDKDISLSGEHVR 397
A SD + + NSI T GGTH++ V + L +L KK K K + + + VR
Sbjct: 342 AVSDGSFNQVSFVNSIATTSGGTHVKYVSDQIINKLVETLSKKEKG--KKKLMIKPQEVR 399
Query: 398 EGLTCIISVRVPNPEFEGQTKTRL 421
+ + I+ + NP F QTK +L
Sbjct: 400 DNMFLFINCLIENPAFTSQTKEQL 423
Score = 60 (26.2 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 17/47 (36%), Positives = 22/47 (46%)
Query: 55 PRAFLSSSIATEAFKENPVSKTYGSEQIQVLEGLEAVRKRPAMYIGS 101
P ++S + + P T SE Q L LE + KRP YIGS
Sbjct: 36 PLGDATNSTVSSSRSSTP-KPTNASETYQKLSQLEHILKRPDTYIGS 81
>UNIPROTKB|Q5A1E7 [details] [associations]
symbol:TOP2 "DNA topoisomerase 2" species:237561 "Candida
albicans SC5314" [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IGI] [GO:0009267 "cellular
response to starvation" evidence=IMP] [GO:0030447 "filamentous
growth" evidence=IMP] [GO:0036170 "filamentous growth of a
population of unicellular organisms in response to starvation"
evidence=IMP] [GO:0036178 "filamentous growth of a population of
unicellular organisms in response to neutral pH" evidence=IMP]
[GO:0036244 "cellular response to neutral pH" evidence=IMP]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 Pfam:PF00204 Pfam:PF00521
Pfam:PF02518 PRINTS:PR00418 SMART:SM00387 SMART:SM00433
SMART:SM00434 CGD:CAL0005199 Pfam:PF01751 InterPro:IPR006171
GO:GO:0005524 GO:GO:0005694 GO:GO:0036244 GO:GO:0036178
GO:GO:0009267 Gene3D:3.30.565.10 SUPFAM:SSF55874 GO:GO:0036170
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 Gene3D:3.30.1360.40 InterPro:IPR024946
GO:GO:0006265 EMBL:AACQ01000084 EMBL:AACQ01000083 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
Gene3D:3.40.50.670 KO:K03164 RefSeq:XP_715530.1 RefSeq:XP_715586.1
ProteinModelPortal:Q5A1E7 SMR:Q5A1E7 STRING:Q5A1E7 GeneID:3642722
GeneID:3642777 KEGG:cal:CaO19.10391 KEGG:cal:CaO19.2873
Uniprot:Q5A1E7
Length = 1461
Score = 157 (60.3 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 78/324 (24%), Positives = 129/324 (39%)
Query: 106 GLHHLVYEILDNAVD-EAQAGYASNIEVALLADNSV-SVADNGRGIPIDLHPATNKSALE 163
GL+ + EIL NA D + + NI V + A+N++ V ++G+GIPI++H N E
Sbjct: 109 GLYKIFDEILVNAADNKIRDPSMKNIRVKIDAENNIIEVMNDGKGIPIEMHTKENMYIPE 168
Query: 164 TVLTVLHAXXXXXXXXXXXXXXXXXXXXXXXXXNALSESLEVTVWRDGMEYHQKYSRGKP 223
+ L N S EV M K S
Sbjct: 169 LIFGNL--LTSSNYDDDQKKVTGGRNGFGAKLCNIFSTQFEVETADLNMGKLYKQSWTNN 226
Query: 224 VTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALR 283
++ ++ + ++ T+I F PD F D N + +R + L ++
Sbjct: 227 MSNVSKPKITTLRPKKEYTKITFRPDLSKFDMDC-LD-NDLLSVLRRRVY---DLCGTVK 281
Query: 284 KEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITIDLAL-QW-CSD 341
+ + N F G +E YV+ + G K+ I ++ +W +
Sbjct: 282 NCNIYLNDKRLNISSFKGYVEMYVKAIKERSPEPEPQDGTIKNFTTIVHEVFNDRWEVAF 341
Query: 342 AYSD---TMLGYANSIRTIDGGTHIEGVKASLTRTL-NSLGKKSKTVKDKDISLSGEHVR 397
A SD + + NSI T GGTH++ V + L +L KK K K + + + VR
Sbjct: 342 AVSDGSFNQVSFVNSIATTSGGTHVKYVSDQIINKLVETLSKKEKG--KKKLMIKPQEVR 399
Query: 398 EGLTCIISVRVPNPEFEGQTKTRL 421
+ + I+ + NP F QTK +L
Sbjct: 400 DNMFLFINCLIENPAFTSQTKEQL 423
Score = 60 (26.2 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 17/47 (36%), Positives = 22/47 (46%)
Query: 55 PRAFLSSSIATEAFKENPVSKTYGSEQIQVLEGLEAVRKRPAMYIGS 101
P ++S + + P T SE Q L LE + KRP YIGS
Sbjct: 36 PLGDATNSTVSSSRSSTP-KPTNASETYQKLSQLEHILKRPDTYIGS 81
>UNIPROTKB|Q0DYE1 [details] [associations]
symbol:Os02g0699700 "DNA topoisomerase 2" species:39947
"Oryza sativa Japonica Group" [GO:0000712 "resolution of meiotic
recombination intermediates" evidence=IBA] [GO:0000795
"synaptonemal complex" evidence=IBA] [GO:0000819 "sister chromatid
segregation" evidence=IBA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0006312 "mitotic
recombination" evidence=IBA] [GO:0007059 "chromosome segregation"
evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR013506 InterPro:IPR013758 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521
Pfam:PF02518 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 SMART:SM00434 Pfam:PF01751 InterPro:IPR006171
GO:GO:0005524 GO:GO:0006261 Gene3D:3.30.565.10 SUPFAM:SSF55874
EMBL:AP008208 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 Gene3D:3.30.1360.40
InterPro:IPR024946 GO:GO:0000819 GO:GO:0006312 GO:GO:0070683
GO:GO:0000712 GO:GO:0000795 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:3.40.50.670 KO:K03164
RefSeq:NP_001047833.1 UniGene:Os.34202 ProteinModelPortal:Q0DYE1
STRING:Q0DYE1 PRIDE:Q0DYE1 GeneID:4330426 KEGG:osa:4330426
Gramene:Q0DYE1 Uniprot:Q0DYE1
Length = 956
Score = 158 (60.7 bits), Expect = 7.8e-08, P = 7.8e-08
Identities = 71/327 (21%), Positives = 135/327 (41%)
Query: 106 GLHHLVYEILDNAVDEAQAGYA-SNIEVALLADNS-VSVADNGRGIPIDLHPATNKSALE 163
GL+ + EIL NA D Q + ++ V + AD +SV +NG GIP+++H E
Sbjct: 77 GLYKIFDEILVNAADNKQRDPSMDSLRVEIDADEGRISVYNNGDGIPVEIHQEEGVYVPE 136
Query: 164 TVLTVLHAXXXXXXXXXXXXXXXXXXXXXXXXXNALSES--LEVTVWRDGMEYHQKYSRG 221
+ H N S +E R +Y Q +S
Sbjct: 137 MIFG--HLLTSSNYDDNVKKTTGGRNGYGAKLTNIFSTEFVIETADGRRQKKYKQVFSEN 194
Query: 222 KPVTTLTCHVLPVDSKDRQG---TRIRFWPDKQVFTTAIQFDHNTIA---GRIRELAFLN 275
+ P +K +QG TR+ F PD F +++ +A R+ ++A
Sbjct: 195 MGKKSE-----PQITKCKQGENWTRVTFKPDLAKFNMT-HLENDVVALMRKRVVDMAGTL 248
Query: 276 PKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITIDLA 335
K T+ + + + +++Y ++ Y++ + D+ ++++ + V+ ++
Sbjct: 249 GK-TVKVELDHQKVPVHSFSDY-----VKLYIKSASKDRDDVNELPSISQKVND-RWEVC 301
Query: 336 LQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASL-TRTLNSLGKKSKTVKDKDISLSGE 394
+ + + + N I TI GGTH++ V + T +N + K++K K
Sbjct: 302 VSLSEGQFQQ--VSFVNRIATIKGGTHVDYVTNQIATHVMNIVNKRNKNAHMK-----AH 354
Query: 395 HVREGLTCIISVRVPNPEFEGQTKTRL 421
+V+ L ++ + NP F+ QTK L
Sbjct: 355 NVKSHLWVFVNALIDNPAFDSQTKETL 381
>TAIR|locus:2076201 [details] [associations]
symbol:TOPII "AT3G23890" species:3702 "Arabidopsis
thaliana" [GO:0000712 "resolution of meiotic recombination
intermediates" evidence=IBA] [GO:0000795 "synaptonemal complex"
evidence=IBA] [GO:0000819 "sister chromatid segregation"
evidence=IBA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0003918 "DNA topoisomerase type II (ATP-hydrolyzing) activity"
evidence=IEA;ISS;IBA] [GO:0005524 "ATP binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0006200 "ATP catabolic process" evidence=IBA]
[GO:0006259 "DNA metabolic process" evidence=IEA;ISS] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IEA;ISS;IBA] [GO:0006312 "mitotic
recombination" evidence=IBA] [GO:0007059 "chromosome segregation"
evidence=ISS] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS;IBA] [GO:0009330 "DNA topoisomerase complex
(ATP-hydrolyzing)" evidence=ISS;IBA] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0044774 "mitotic DNA integrity checkpoint"
evidence=IBA] [GO:0003916 "DNA topoisomerase activity"
evidence=ISS] [GO:0000226 "microtubule cytoskeleton organization"
evidence=RCA] [GO:0000911 "cytokinesis by cell plate formation"
evidence=RCA] [GO:0006260 "DNA replication" evidence=RCA]
[GO:0006270 "DNA replication initiation" evidence=RCA] [GO:0006275
"regulation of DNA replication" evidence=RCA] [GO:0006306 "DNA
methylation" evidence=RCA] [GO:0006342 "chromatin silencing"
evidence=RCA] [GO:0008283 "cell proliferation" evidence=RCA]
[GO:0009909 "regulation of flower development" evidence=RCA]
[GO:0009957 "epidermal cell fate specification" evidence=RCA]
[GO:0010583 "response to cyclopentenone" evidence=RCA] [GO:0016458
"gene silencing" evidence=RCA] [GO:0016572 "histone
phosphorylation" evidence=RCA] [GO:0034968 "histone lysine
methylation" evidence=RCA] [GO:0051225 "spindle assembly"
evidence=RCA] [GO:0051567 "histone H3-K9 methylation" evidence=RCA]
[GO:0051726 "regulation of cell cycle" evidence=RCA]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00521 PRINTS:PR00418 PROSITE:PS00177
SMART:SM00387 SMART:SM00433 SMART:SM00434 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0006261 Gene3D:3.30.565.10
SUPFAM:SSF55874 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 Gene3D:3.30.1360.40
InterPro:IPR024946 GO:GO:0000819 GO:GO:0006312 EMBL:AP001297
GO:GO:0009330 GO:GO:0070683 GO:GO:0000712 GO:GO:0000795
GO:GO:0006265 GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719
Gene3D:1.10.268.10 eggNOG:COG0187 Gene3D:3.40.50.670
PROSITE:PS50880 KO:K03164 HOGENOM:HOG000216693 OMA:AKEYFQD
EMBL:L21015 EMBL:U12284 EMBL:U12285 EMBL:M84654 IPI:IPI00527804
PIR:S53598 RefSeq:NP_189031.1 UniGene:At.22343
ProteinModelPortal:P30182 SMR:P30182 STRING:P30182 PaxDb:P30182
PRIDE:P30182 EnsemblPlants:AT3G23890.1 GeneID:821972
KEGG:ath:AT3G23890 GeneFarm:2656 TAIR:At3g23890 InParanoid:P30182
PhylomeDB:P30182 ProtClustDB:PLN03237 Genevestigator:P30182
GermOnline:AT3G23890 Uniprot:P30182
Length = 1473
Score = 157 (60.3 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 84/358 (23%), Positives = 149/358 (41%)
Query: 79 SEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQA-GYASNIEVAL-LA 136
++ + V E E V+ RP Y+ P GL+ + EIL NA D Q +++V + +
Sbjct: 59 TQTLWVYEKDEMVQ-RPVTYV----P-GLYKIFDEILVNAADNKQRDAKMDSVQVVIDVE 112
Query: 137 DNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAXXXXXXXXXXXXXXXXXXXXXXXXX 196
N +SV ++G G+P+++H E + H
Sbjct: 113 QNLISVCNSGAGVPVEIHQEEGIYVPEMIFG--HLLTSSNYDDNVKKTTGGRNGYGAKLT 170
Query: 197 NALSESLEVTVWRDGM---EYHQKYSR--GK---PVTTLTCHVLPVDSKDRQGTRIRFWP 248
N S + DG +Y Q + GK PV T C+ K T++ F P
Sbjct: 171 NIFSTEFIIET-ADGKRLKKYKQVFENNMGKKSEPVIT-KCN------KSENWTKVTFKP 222
Query: 249 DKQVFT-TAIQFDHNTIAG-RIRELA-FLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEE 305
D + F T ++ D + R+ ++A L + + L + P K+ + +Y ++
Sbjct: 223 DLKKFNMTELEDDVVALMSKRVFDIAGCLGKSVKVELNGKQI-PVKS-FTDY-----VDL 275
Query: 306 YVQWLNTDKK--PLHDVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHI 363
Y+ N + PL + D + + L S+ + + NSI TI GGTH+
Sbjct: 276 YLSAANKSRTEDPLPRLTEKVNDRWEVCVSL-----SEGQFQ-QVSFVNSIATIKGGTHV 329
Query: 364 EGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRL 421
+ V + +T + + K K+K+ ++ +V+ L ++ + NP F+ QTK L
Sbjct: 330 DYVTSQITNHIVAAVNK----KNKNANVKAHNVKNHLWVFVNALIDNPAFDSQTKETL 383
>SGD|S000005032 [details] [associations]
symbol:TOP2 "Topoisomerase II, relieves torsional strain in
DNA by cleaving and re" species:4932 "Saccharomyces cerevisiae"
[GO:0044774 "mitotic DNA integrity checkpoint" evidence=IMP]
[GO:0016853 "isomerase activity" evidence=IEA] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IEA;IDA]
[GO:0006333 "chromatin assembly or disassembly" evidence=IMP]
[GO:0006265 "DNA topological change" evidence=IEA;IDA] [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0006271 "DNA strand elongation involved in DNA
replication" evidence=IMP] [GO:0007131 "reciprocal meiotic
recombination" evidence=IMP] [GO:0000795 "synaptonemal complex"
evidence=IDA] [GO:0000019 "regulation of mitotic recombination"
evidence=IMP] [GO:0000819 "sister chromatid segregation"
evidence=IBA] [GO:0009330 "DNA topoisomerase complex
(ATP-hydrolyzing)" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0000712 "resolution of meiotic
recombination intermediates" evidence=IBA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003916 "DNA topoisomerase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0005694 "chromosome" evidence=IEA] [GO:0006259
"DNA metabolic process" evidence=IEA] [GO:0031055 "chromatin
remodeling at centromere" evidence=IMP] [GO:0097046 "replication
fork progression beyond termination site" evidence=IMP] [GO:0097047
"DNA replication termination region" evidence=IPI]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00521 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 SMART:SM00434
SGD:S000005032 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005739
GO:GO:0005524 EMBL:BK006947 GO:GO:0006333 Gene3D:3.30.565.10
SUPFAM:SSF55874 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 Gene3D:3.30.1360.40
InterPro:IPR024946 GO:GO:0000819 GO:GO:0009330 GO:GO:0070683
GO:GO:0006271 GO:GO:0000712 EMBL:X89016 GO:GO:0000795 EMBL:AF458969
EMBL:AF458971 EMBL:AF458972 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
eggNOG:COG0187 Gene3D:3.40.50.670 PROSITE:PS50880 GO:GO:0031055
GO:GO:0000019 KO:K02952 GO:GO:0097046 RefSeq:NP_014311.3
GeneID:855636 KEGG:sce:YNL088W KO:K03164 RefSeq:NP_014318.3
GeneID:855643 KEGG:sce:YNL081C HOGENOM:HOG000216693
GeneTree:ENSGT00390000016222 OMA:AKEYFQD OrthoDB:EOG4XPTPZ
EMBL:M13814 EMBL:Z71364 PIR:S57534 PDB:1BGW PDB:1BJT PDB:1PVG
PDB:1QZR PDB:2RGR PDB:3L4J PDB:3L4K PDB:4GFH PDBsum:1BGW
PDBsum:1BJT PDBsum:1PVG PDBsum:1QZR PDBsum:2RGR PDBsum:3L4J
PDBsum:3L4K PDBsum:4GFH DisProt:DP00076 ProteinModelPortal:P06786
SMR:P06786 DIP:DIP-2300N IntAct:P06786 MINT:MINT-495862
STRING:P06786 PaxDb:P06786 PeptideAtlas:P06786 EnsemblFungi:YNL088W
CYGD:YNL088w ChEMBL:CHEMBL5290 EvolutionaryTrace:P06786
NextBio:979854 ArrayExpress:P06786 Genevestigator:P06786
GermOnline:YNL088W GO:GO:0097047 Uniprot:P06786
Length = 1428
Score = 148 (57.2 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 77/330 (23%), Positives = 132/330 (40%)
Query: 106 GLHHLVYEILDNAVD-EAQAGYASNIEVALLAD-NSVSVADNGRGIPIDLHPATNKSALE 163
GL + EIL NA D + + I+V + A+ +++ V ++G+GIPI++H N E
Sbjct: 59 GLFKIFDEILVNAADNKVRDPSMKRIDVNIHAEEHTIEVKNDGKGIPIEIHNKENIYIPE 118
Query: 164 TVLTVLHAXXXXXXXXXXXXXXXXXXXXXXXXXNALSES--LEVTVWRDGMEYHQKYSRG 221
+ H N S LE G +Y QK+
Sbjct: 119 MIFG--HLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTEFILETADLNVGQKYVQKWENN 176
Query: 222 KPVTTLTCHVLPVDS--KDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF-LNPKL 278
+ CH + S K T++ F PD F + D N I G +R + +N +
Sbjct: 177 MSI----CHPPKITSYKKGPSYTKVTFKPDLTRFGMK-ELD-NDILGVMRRRVYDINGSV 230
Query: 279 T-IALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRK-DVDGITID-LA 335
I + + + Y +E Y++ L ++ + G K D+ I + +
Sbjct: 231 RDINVYLNGKSLKIRNFKNY-----VELYLKSLEKKRQLDNGEDGAAKSDIPTILYERIN 285
Query: 336 LQW-CSDAYSDT---MLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISL 391
+W + A SD + + NSI T GGTH+ + + + ++ + KK K K
Sbjct: 286 NRWEVAFAVSDISFQQISFVNSIATTMGGTHVNYITDQIVKKISEILKKKKKKSVKSFQ- 344
Query: 392 SGEHVREGLTCIISVRVPNPEFEGQTKTRL 421
++ + I+ + NP F QTK +L
Sbjct: 345 ----IKNNMFIFINCLIENPAFTSQTKEQL 370
>UNIPROTKB|Q755V8 [details] [associations]
symbol:AER410W "DNA topoisomerase 2" species:284811 "Ashbya
gossypii ATCC 10895" [GO:0000712 "resolution of meiotic
recombination intermediates" evidence=IBA] [GO:0000795
"synaptonemal complex" evidence=IBA] [GO:0000819 "sister chromatid
segregation" evidence=IBA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0006312 "mitotic
recombination" evidence=IBA] [GO:0007059 "chromosome segregation"
evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00521 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 SMART:SM00434
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524 GO:GO:0006261
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0000819 GO:GO:0006312
EMBL:AE016818 GenomeReviews:AE016818_GR GO:GO:0070683 GO:GO:0000712
GO:GO:0000795 GO:GO:0006265 GO:GO:0003918 Gene3D:3.90.199.10
SUPFAM:SSF56719 Gene3D:1.10.268.10 Gene3D:3.40.50.670 KO:K03164
HOGENOM:HOG000216693 OMA:AKEYFQD OrthoDB:EOG4XPTPZ
RefSeq:NP_985265.1 ProteinModelPortal:Q755V8 SMR:Q755V8
STRING:Q755V8 EnsemblFungi:AAS53089 GeneID:4621483
KEGG:ago:AGOS_AER410W PhylomeDB:Q755V8 Uniprot:Q755V8
Length = 1427
Score = 147 (56.8 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 86/335 (25%), Positives = 131/335 (39%)
Query: 106 GLHHLVYEILDNAVD-EAQAGYASNIEVAL-LADNSVSVADNGRGIPIDLHPATNKSALE 163
GL + EI+ NA D + + IEV + +N + V ++G GIPI++H E
Sbjct: 62 GLFKIFDEIIVNAADNKVRDPSMKKIEVVINREENYIEVKNDGNGIPIEVHAKEGIYIPE 121
Query: 164 TVLTVLHAXXXXXXXXXXXXXXXXXXXXXXXXXNALSES--LEVTVWRDGMEYHQKYSRG 221
+ H N S LE + + G +Y QK+
Sbjct: 122 LIFG--HLLTSSNYDDNEKKVTGGRNGYGAKLCNIFSTEFILETSDPKSGQKYVQKWESN 179
Query: 222 KPVTTLTCHVLPVDS--KDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLT 279
V CH + S K T+I F PD Q F + D I G +R + +
Sbjct: 180 MNV----CHPPKITSYKKGPSYTKITFKPDLQRFGMEVLDDD--ILGVMRRRVY---DIN 230
Query: 280 IALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKD-----VDGITI-- 332
++R + F +E Y++ L +KK L D G + V+ TI
Sbjct: 231 GSVRDVNVSLNGKSLKIRNFKSYMELYMRSL--EKKRLIDS-GMAPESASEKVNAPTILY 287
Query: 333 -DLALQW-CSDAYSDT---MLGYANSIRTIDGGTHIEGVKASLTRTLNSL-GKKSKTVKD 386
+ +W A SD + + NSI T GGTH+ + + + ++ L KK KTVK
Sbjct: 288 EKVNDRWELGFAVSDISFQQISFVNSIATTSGGTHVNYLTDQIVKKVSELLSKKKKTVKP 347
Query: 387 KDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRL 421
I R + I+ + NP F QTK +L
Sbjct: 348 FQI-------RNNIFIFINCLIENPAFTSQTKEQL 375
>DICTYBASE|DDB_G0270418 [details] [associations]
symbol:top2 "DNA topoisomerase II" species:44689
"Dictyostelium discoideum" [GO:0006265 "DNA topological change"
evidence=IEA;ISS;IBA] [GO:0006259 "DNA metabolic process"
evidence=IEA] [GO:0005694 "chromosome" evidence=IEA;ISS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity"
evidence=IEA;ISS;IBA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0009295 "nucleoid"
evidence=IBA] [GO:0044774 "mitotic DNA integrity checkpoint"
evidence=IBA] [GO:0007059 "chromosome segregation" evidence=IBA]
[GO:0006312 "mitotic recombination" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0000819 "sister
chromatid segregation" evidence=IBA] [GO:0000795 "synaptonemal
complex" evidence=IBA] [GO:0000712 "resolution of meiotic
recombination intermediates" evidence=IBA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0016853 "isomerase activity"
evidence=IEA] [GO:0003916 "DNA topoisomerase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR001241
InterPro:IPR002205 InterPro:IPR003594 InterPro:IPR013506
InterPro:IPR013757 InterPro:IPR013758 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521
Pfam:PF02518 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 SMART:SM00434 dictyBase:DDB_G0270418 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 EMBL:AAFI02000005
GenomeReviews:CM000150_GR GO:GO:0006261 Gene3D:3.30.565.10
SUPFAM:SSF55874 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 Gene3D:3.30.1360.40
InterPro:IPR024946 GO:GO:0000819 GO:GO:0006312 GO:GO:0070683
GO:GO:0000712 GO:GO:0000795 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
eggNOG:COG0187 Gene3D:3.40.50.670 PROSITE:PS50880 KO:K03164
ProtClustDB:PTZ00108 OMA:ADNKQND RefSeq:XP_646786.1 HSSP:P11388
ProteinModelPortal:Q55BP5 SMR:Q55BP5 STRING:Q55BP5 PRIDE:Q55BP5
EnsemblProtists:DDB0231510 GeneID:8617759 KEGG:ddi:DDB_G0270418
Uniprot:Q55BP5
Length = 1521
Score = 121 (47.7 bits), Expect = 3.8e-06, Sum P(2) = 3.8e-06
Identities = 63/285 (22%), Positives = 116/285 (40%)
Query: 242 TRIRFWPDKQVFTTAIQFDHNTIA---GRIRELAFLNPKLTIALRKEDSDPEK-NQYNEY 297
T+I F+P+ F ++FD + +A R+ ++A NP L ++L E+ +Y
Sbjct: 288 TKITFYPELDRFGM-VEFDDDLVALLSKRVYDIAGCNPTLKVSLNDEELGIRSFEKYINL 346
Query: 298 FFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTI 357
+F EE N K ++ V R ++ +T+ Q+ + + NSI T+
Sbjct: 347 YFPD--EE-----NAPKV-YYEKVSDRWEL-AVTLSKESQF-------NQVSFVNSICTV 390
Query: 358 DGGTHIEGVKASLTRTLNS-LGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQ 416
GGTH+ +++ + + KK+K D + H+ + C+I NP F+ Q
Sbjct: 391 KGGTHVTHALSNIVTAIQEQVNKKNKGSADIKPAFIKNHLSVFVNCLIE----NPHFDSQ 446
Query: 417 TKTRLGNPEVRKVVD--QSVQEYLTEYLELHPDVXXXXXXXXXXXXXXXXXXXXXXXXVR 474
TK L + ++ + ++++ L+ + +
Sbjct: 447 TKETLTS-KISSFGSRCEPSEKFIKRVLDSKSGIVASILEFAQFKDQSALKRSTSSGGKK 505
Query: 475 QKSVLRSSSLPGKLADCS---STTPEESEIFIVEGDSAGGSAKQG 516
K S+P KL D + T E+ + + EGDSA A G
Sbjct: 506 GKV-----SIP-KLDDANLAGGTKSEDCTLILTEGDSAKSLATAG 544
Score = 74 (31.1 bits), Expect = 3.8e-06, Sum P(2) = 3.8e-06
Identities = 19/51 (37%), Positives = 29/51 (56%)
Query: 106 GLHHLVYEILDNAVDEAQA-GYASNIEVALLADNS-VSVADNGRGIPIDLH 154
G++ + EIL NA D Q G I+V + + +SV ++G GIPI +H
Sbjct: 152 GIYKIFDEILVNAADNKQREGNMKFIKVVIDREKGFISVTNDGAGIPIQVH 202
Score = 52 (23.4 bits), Expect = 0.00067, Sum P(2) = 0.00067
Identities = 27/89 (30%), Positives = 38/89 (42%)
Query: 60 SSSIATEAFKENPVSKTYGS--EQI-QVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILD 116
SSS FK S G E+I Q E L+ + RP YIGST + V+E D
Sbjct: 82 SSSDNENVFKNIASSAKKGKSIEEIYQKKELLDQILLRPDTYIGSTERQEEELWVWE--D 139
Query: 117 NAVDEAQAGYASNIEVALLADNSVSVADN 145
+ + + I + + V+ ADN
Sbjct: 140 KRMVHRKVSFVPGI-YKIFDEILVNAADN 167
>FB|FBgn0003732 [details] [associations]
symbol:Top2 "Topoisomerase 2" species:7227 "Drosophila
melanogaster" [GO:0006265 "DNA topological change" evidence=IDA]
[GO:0005634 "nucleus" evidence=NAS;IDA] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=NAS;IDA]
[GO:0000400 "four-way junction DNA binding" evidence=IDA]
[GO:0016590 "ACF complex" evidence=IDA] [GO:0008623 "CHRAC"
evidence=IDA] [GO:0007067 "mitosis" evidence=IMP;TAS] [GO:0007126
"meiosis" evidence=TAS] [GO:0003729 "mRNA binding" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0005694 "chromosome"
evidence=IDA] [GO:0051310 "metaphase plate congression"
evidence=IDA] [GO:0000819 "sister chromatid segregation"
evidence=IDA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000182
"rDNA binding" evidence=IDA] [GO:0003696 "satellite DNA binding"
evidence=IDA] [GO:0006342 "chromatin silencing" evidence=IDA]
[GO:0007076 "mitotic chromosome condensation" evidence=IMP]
[GO:0007052 "mitotic spindle organization" evidence=IMP]
[GO:0007095 "mitotic G2 DNA damage checkpoint" evidence=IGI]
[GO:0009295 "nucleoid" evidence=IBA] [GO:0006261 "DNA-dependent DNA
replication" evidence=IBA] [GO:0044774 "mitotic DNA integrity
checkpoint" evidence=IBA] [GO:0000712 "resolution of meiotic
recombination intermediates" evidence=IBA] [GO:0006312 "mitotic
recombination" evidence=IBA] [GO:0000795 "synaptonemal complex"
evidence=IBA] InterPro:IPR001241 InterPro:IPR002205
InterPro:IPR003594 InterPro:IPR013506 InterPro:IPR013757
InterPro:IPR013758 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521 Pfam:PF02518
PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387 SMART:SM00433
SMART:SM00434 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0007095 GO:GO:0007052 EMBL:AE014134 GO:GO:0003729
GO:GO:0006261 GO:GO:0006342 Gene3D:3.30.565.10 SUPFAM:SSF55874
GO:GO:0007076 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 Gene3D:3.30.1360.40
InterPro:IPR024946 GO:GO:0006312 GO:GO:0008623 GO:GO:0070683
GO:GO:0000712 GO:GO:0003696 GO:GO:0051310 GO:GO:0000182
GO:GO:0000795 GO:GO:0006265 GO:GO:0003918 Gene3D:3.90.199.10
SUPFAM:SSF56719 Gene3D:1.10.268.10 eggNOG:COG0187
Gene3D:3.40.50.670 PROSITE:PS50880 GO:GO:0000400 KO:K03164
GeneTree:ENSGT00390000016222 ChiTaRS:TOP2A OMA:AKEYFQD EMBL:X61209
PIR:S02160 RefSeq:NP_476760.1 UniGene:Dm.22886
ProteinModelPortal:P15348 SMR:P15348 STRING:P15348 PaxDb:P15348
PRIDE:P15348 EnsemblMetazoa:FBtr0081287 EnsemblMetazoa:FBtr0332320
GeneID:35225 KEGG:dme:Dmel_CG10223 CTD:35225 FlyBase:FBgn0003732
InParanoid:P15348 OrthoDB:EOG4HQC04 PhylomeDB:P15348
BindingDB:P15348 ChEMBL:CHEMBL2671 GenomeRNAi:35225 NextBio:792468
Bgee:P15348 GermOnline:CG10223 Uniprot:P15348
Length = 1447
Score = 136 (52.9 bits), Expect = 3.2e-05, P = 3.2e-05
Identities = 84/332 (25%), Positives = 137/332 (41%)
Query: 106 GLHHLVYEILDNAVDEAQAGYASN-IEVALLAD-NSVSVADNGRGIPIDLHPATNKSALE 163
GL+ + EIL NA D Q + N I++ + + N VSV +NG+GIP+ +H K +
Sbjct: 61 GLYKIFDEILVNAADNKQRDKSMNTIKIDIDPERNMVSVWNNGQGIPVTMHKE-QKMYVP 119
Query: 164 TVLTVLHAXXXXXXXXXXXXXXXXXXXXXXXXXNALSESLEV-TVWRDGMEYHQKYSR-- 220
T++ H N S S V T R EY + + +
Sbjct: 120 TMIFG-HLLTSSNYNDDEKKVTGGRNGYGAKLCNIFSTSFTVETATR---EYKKSFKQTW 175
Query: 221 GKPVTTLTCHVLPVDSKDRQGT---RIRFWPDKQVFTTAIQFDHNTIA---GRIRELAFL 274
G + + V KD GT RI F PD F + D + +A R ++A
Sbjct: 176 GNNMGKAS----DVQIKDFNGTDYTRITFSPDLAKFKMD-RLDEDIVALMSRRAYDVAAS 230
Query: 275 NPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKP----LHDVVGFRKDVDGI 330
+ +++ L +N + +Y ++ +++ + D P +H+V R +V
Sbjct: 231 SKGVSVFLNGNKLGV-RN-FKDY-----IDLHIKNTDDDSGPPIKIVHEVANERWEVACC 283
Query: 331 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTL-NSLGKKSKTVKDKDI 389
D Q S + NSI T GG H++ V +L + L L KK+K I
Sbjct: 284 PSDRGFQQVS---------FVNSIATYKGGRHVDHVVDNLIKQLLEVLKKKNKG----GI 330
Query: 390 SLSGEHVREGLTCIISVRVPNPEFEGQTKTRL 421
++ VR L ++ + NP F+ QTK +
Sbjct: 331 NIKPFQVRNHLWVFVNCLIENPTFDSQTKENM 362
>POMBASE|SPBC1A4.03c [details] [associations]
symbol:top2 "DNA topoisomerase II" species:4896
"Schizosaccharomyces pombe" [GO:0000228 "nuclear chromosome"
evidence=NAS] [GO:0000712 "resolution of meiotic recombination
intermediates" evidence=IMP] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IGI;IDA;IMP] [GO:0005524 "ATP
binding" evidence=IC] [GO:0005634 "nucleus" evidence=IDA]
[GO:0006265 "DNA topological change" evidence=IGI;IDA;IMP]
[GO:0006271 "DNA strand elongation involved in DNA replication"
evidence=ISO] [GO:0006325 "chromatin organization" evidence=IGI]
[GO:0006406 "mRNA export from nucleus" evidence=IMP] [GO:0007076
"mitotic chromosome condensation" evidence=IMP] [GO:0042790
"transcription of nuclear large rRNA transcript from RNA polymerase
I promoter" evidence=IGI] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001241 InterPro:IPR002205
InterPro:IPR003594 InterPro:IPR013506 InterPro:IPR013757
InterPro:IPR013758 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521 Pfam:PF02518
PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387 SMART:SM00433
SMART:SM00434 PomBase:SPBC1A4.03c Pfam:PF01751 InterPro:IPR006171
GO:GO:0005524 EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0006406
Gene3D:3.30.565.10 SUPFAM:SSF55874 GO:GO:0007076 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0006325 GO:GO:0000228
GO:GO:0006271 GO:GO:0000712 GO:GO:0042790 GO:GO:0006265
GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
eggNOG:COG0187 Gene3D:3.40.50.670 PROSITE:PS50880 KO:K03164
HOGENOM:HOG000216693 OMA:AKEYFQD EMBL:X04326 PIR:T39851
RefSeq:NP_595805.1 ProteinModelPortal:P08096 SMR:P08096
STRING:P08096 EnsemblFungi:SPBC1A4.03c.1 GeneID:2540541
KEGG:spo:SPBC1A4.03c OrthoDB:EOG4XPTPZ NextBio:20801667
Uniprot:P08096
Length = 1485
Score = 102 (41.0 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 32/128 (25%), Positives = 59/128 (46%)
Query: 295 NEYFFAGGLEEYVQ-WLNTDKKPLHDVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANS 353
NE G ++YV+ +L +D KP + + D+A SD + + N+
Sbjct: 305 NERISISGFKKYVEMYLASDTKPDEEPPRVIYEHVNDRWDVAFA-VSDGQFK-QVSFVNN 362
Query: 354 IRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEF 413
I TI GGTH+ V + ++ + KK ++K + ++ + ++ ++ NP F
Sbjct: 363 ISTIRGGTHVNYVANKIVDAIDEVVKK----ENKKAPVKAFQIKNYVQVFVNCQIENPSF 418
Query: 414 EGQTKTRL 421
+ QTK L
Sbjct: 419 DSQTKETL 426
Score = 79 (32.9 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 18/51 (35%), Positives = 33/51 (64%)
Query: 106 GLHHLVYEILDNAVD-EAQAGYASNIEVALLAD-NSVSVADNGRGIPIDLH 154
GL+ + EI+ NA D + + + ++V L + N +S+ +NG+GIPI++H
Sbjct: 125 GLYKIFDEIIVNAADNKVRDPNMNTLKVTLDPEANVISIYNNGKGIPIEIH 175
>WB|WBGene00019884 [details] [associations]
symbol:R05D3.12 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0006265 "DNA topological change" evidence=IEA]
[GO:0000003 "reproduction" evidence=IMP] [GO:0007276 "gamete
generation" evidence=IMP] InterPro:IPR001241 InterPro:IPR002205
InterPro:IPR003594 InterPro:IPR013506 InterPro:IPR013757
InterPro:IPR013758 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521 Pfam:PF02518
PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387 SMART:SM00433
SMART:SM00434 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005739
GO:GO:0005524 GO:GO:0006261 Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 Gene3D:3.30.1360.40 InterPro:IPR024946
GO:GO:0000819 GO:GO:0006312 EMBL:FO081667 GO:GO:0007276
GO:GO:0070683 GO:GO:0000712 GO:GO:0000795 GO:GO:0006265
GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
eggNOG:COG0187 Gene3D:3.40.50.670 PROSITE:PS50880
HOGENOM:HOG000216693 GeneTree:ENSGT00390000016222
RefSeq:NP_001129839.2 RefSeq:NP_001254958.1 RefSeq:NP_741252.2
ProteinModelPortal:P34534 SMR:P34534 PaxDb:P34534
EnsemblMetazoa:R05D3.12a GeneID:259522 KEGG:cel:CELE_R05D3.12
UCSC:R05D3.1 CTD:259522 WormBase:R05D3.12a WormBase:R05D3.12b
WormBase:R05D3.12c InParanoid:P34534 OMA:KLEDAEW NextBio:891486
Uniprot:P34534
Length = 1170
Score = 137 (53.3 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 81/328 (24%), Positives = 131/328 (39%)
Query: 102 TGPRGLHHLVYEILDNAVD-EAQAGYASNIEVALLADNS-VSVADNGRGIPIDLHPATNK 159
T P GL + EIL NA D +A+ + +EV L + + +SV +NG G+P+++HP T
Sbjct: 91 TYPPGLLKIFDEILVNAADNKARDSSMNRLEVWLDRETARISVWNNGSGLPVEIHP-TEG 149
Query: 160 SALETVLTVLHAXXXXXXXXXXXXXXXXXXXXXXXXXNALSESLEV-TV-WRDGMEYHQK 217
+ T L + N S+ V TV R + QK
Sbjct: 150 IYVPT-LVFGNLFTSSNYDDSEIKTVGGRNGYGAKLCNIFSKEFIVETVDTRIKRRFRQK 208
Query: 218 -YSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDH--NTIAGRIRELAFL 274
Y K V +D + T++ F PD + F D + I R+ E+A
Sbjct: 209 WYDNMKKCNEAEV-VEILDETVKDYTKVEFVPDLERFQIDKLSDDVIDLIGRRVFEVAAT 267
Query: 275 NPK-LTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITID 333
P+ + + L + D + G E+YV+ N L R V G+
Sbjct: 268 LPRDVDVYLNGQKCDVD-----------GFEDYVKMFNDSSSLLFLHPTPRWHV-GVAKR 315
Query: 334 LALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSG 393
S ++ + N+I T GG+H++ V + + + SK + D S+
Sbjct: 316 NNFFGESHVVLPKIVSFVNNINTEKGGSHVDYVMDKIVNIIKPI-VDSK-LGDPTKSVKP 373
Query: 394 EHVREGLTCIISVRVPNPEFEGQTKTRL 421
++ L+ I+ + NP FE QTK L
Sbjct: 374 AVIKNNLSIFINCLIENPSFESQTKETL 401
Score = 40 (19.1 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 495 TPEESEIFIVEGDSAGGSAKQG 516
T E+ + + EGDSA A G
Sbjct: 471 TAEKCTLILTEGDSAKALALAG 492
>UNIPROTKB|P34534 [details] [associations]
symbol:R05D3.12 "Putative DNA topoisomerase 2,
mitochondrial" species:6239 "Caenorhabditis elegans" [GO:0009295
"nucleoid" evidence=IBA] [GO:0007059 "chromosome segregation"
evidence=IBA] [GO:0006312 "mitotic recombination" evidence=IBA]
[GO:0006265 "DNA topological change" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IBA]
[GO:0000819 "sister chromatid segregation" evidence=IBA]
[GO:0000795 "synaptonemal complex" evidence=IBA] [GO:0000712
"resolution of meiotic recombination intermediates" evidence=IBA]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00521 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 SMART:SM00434
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005739 GO:GO:0005524
GO:GO:0006261 Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0000819 GO:GO:0006312
EMBL:FO081667 GO:GO:0007276 GO:GO:0070683 GO:GO:0000712
GO:GO:0000795 GO:GO:0006265 GO:GO:0003918 Gene3D:3.90.199.10
SUPFAM:SSF56719 Gene3D:1.10.268.10 eggNOG:COG0187
Gene3D:3.40.50.670 PROSITE:PS50880 HOGENOM:HOG000216693
GeneTree:ENSGT00390000016222 RefSeq:NP_001129839.2
RefSeq:NP_001254958.1 RefSeq:NP_741252.2 ProteinModelPortal:P34534
SMR:P34534 PaxDb:P34534 EnsemblMetazoa:R05D3.12a GeneID:259522
KEGG:cel:CELE_R05D3.12 UCSC:R05D3.1 CTD:259522 WormBase:R05D3.12a
WormBase:R05D3.12b WormBase:R05D3.12c InParanoid:P34534 OMA:KLEDAEW
NextBio:891486 Uniprot:P34534
Length = 1170
Score = 137 (53.3 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 81/328 (24%), Positives = 131/328 (39%)
Query: 102 TGPRGLHHLVYEILDNAVD-EAQAGYASNIEVALLADNS-VSVADNGRGIPIDLHPATNK 159
T P GL + EIL NA D +A+ + +EV L + + +SV +NG G+P+++HP T
Sbjct: 91 TYPPGLLKIFDEILVNAADNKARDSSMNRLEVWLDRETARISVWNNGSGLPVEIHP-TEG 149
Query: 160 SALETVLTVLHAXXXXXXXXXXXXXXXXXXXXXXXXXNALSESLEV-TV-WRDGMEYHQK 217
+ T L + N S+ V TV R + QK
Sbjct: 150 IYVPT-LVFGNLFTSSNYDDSEIKTVGGRNGYGAKLCNIFSKEFIVETVDTRIKRRFRQK 208
Query: 218 -YSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDH--NTIAGRIRELAFL 274
Y K V +D + T++ F PD + F D + I R+ E+A
Sbjct: 209 WYDNMKKCNEAEV-VEILDETVKDYTKVEFVPDLERFQIDKLSDDVIDLIGRRVFEVAAT 267
Query: 275 NPK-LTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITID 333
P+ + + L + D + G E+YV+ N L R V G+
Sbjct: 268 LPRDVDVYLNGQKCDVD-----------GFEDYVKMFNDSSSLLFLHPTPRWHV-GVAKR 315
Query: 334 LALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSG 393
S ++ + N+I T GG+H++ V + + + SK + D S+
Sbjct: 316 NNFFGESHVVLPKIVSFVNNINTEKGGSHVDYVMDKIVNIIKPI-VDSK-LGDPTKSVKP 373
Query: 394 EHVREGLTCIISVRVPNPEFEGQTKTRL 421
++ L+ I+ + NP FE QTK L
Sbjct: 374 AVIKNNLSIFINCLIENPSFESQTKETL 401
Score = 40 (19.1 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 495 TPEESEIFIVEGDSAGGSAKQG 516
T E+ + + EGDSA A G
Sbjct: 471 TAEKCTLILTEGDSAKALALAG 492
>UNIPROTKB|Q7RJ69 [details] [associations]
symbol:PY03394 "DNA topoisomerase 2" species:73239
"Plasmodium yoelii yoelii" [GO:0000712 "resolution of meiotic
recombination intermediates" evidence=IBA] [GO:0000795
"synaptonemal complex" evidence=IBA] [GO:0000819 "sister chromatid
segregation" evidence=IBA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0006312 "mitotic
recombination" evidence=IBA] [GO:0007059 "chromosome segregation"
evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00521 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 SMART:SM00434
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524 GO:GO:0006261
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0000819 GO:GO:0006312
GO:GO:0070683 GO:GO:0000712 GO:GO:0000795 GO:GO:0006265
GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
eggNOG:COG0187 Gene3D:3.40.50.670 KO:K03164 EMBL:AABL01000973
RefSeq:XP_731396.1 HSSP:P06786 ProteinModelPortal:Q7RJ69
STRING:Q7RJ69 GeneID:3830618 KEGG:pyo:PY03394
EuPathDB:PlasmoDB:PY03394 Uniprot:Q7RJ69
Length = 1489
Score = 113 (44.8 bits), Expect = 0.00021, Sum P(4) = 0.00021
Identities = 26/88 (29%), Positives = 41/88 (46%)
Query: 340 SDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREG 399
+D + + NSI T GGTH+ + L LNSL KK+ + + H+R
Sbjct: 344 TDGSQFQQVSFVNSICTTKGGTHVSYIVDQL---LNSLSKKANAKNKGGMEIKAGHIRNH 400
Query: 400 LTCIISVRVPNPEFEGQTKTRLGNPEVR 427
L ++ + NP F+ QTK L + +
Sbjct: 401 LWVFVNCLIVNPTFDSQTKETLTTKQAK 428
Score = 65 (27.9 bits), Expect = 0.00021, Sum P(4) = 0.00021
Identities = 19/60 (31%), Positives = 33/60 (55%)
Query: 106 GLHHLVYEILDNAVD-EAQAGYASN-----IEVALLADNS-VSVADNGRGIPIDLHPATN 158
GL+ + EI+ NA D +A+ S I++ + + +SV ++G GIP+D+H N
Sbjct: 58 GLYKIFDEIIVNAADVKAREKEKSENPMTCIKIEINREQKKISVYNDGEGIPVDIHKEMN 117
Score = 45 (20.9 bits), Expect = 0.00021, Sum P(4) = 0.00021
Identities = 13/35 (37%), Positives = 17/35 (48%)
Query: 490 DCSSTTPEESEIFIVEGDSA-----GGSAKQGRDR 519
D S +E + + EGDSA G + GRDR
Sbjct: 490 DAGSKYSQECTLILTEGDSAKTSCLAGLSIVGRDR 524
Score = 39 (18.8 bits), Expect = 0.00021, Sum P(4) = 0.00021
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 74 SKTYGSEQIQVLEGLEAVRKRPAMYIGS 101
+KT E+ Q +E + RP YIGS
Sbjct: 4 NKTI-EERYQKKSQIEHILLRPDTYIGS 30
>UNIPROTKB|A8JD08 [details] [associations]
symbol:TOP2 "DNA topoisomerase 2" species:3055
"Chlamydomonas reinhardtii" [GO:0000712 "resolution of meiotic
recombination intermediates" evidence=IBA] [GO:0000795
"synaptonemal complex" evidence=IBA] [GO:0000819 "sister chromatid
segregation" evidence=IBA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0006312 "mitotic
recombination" evidence=IBA] [GO:0007059 "chromosome segregation"
evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00521 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 SMART:SM00434
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524 GO:GO:0006261
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0000819 GO:GO:0006312
GO:GO:0070683 GO:GO:0000712 GO:GO:0000795 GO:GO:0006265
GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
eggNOG:COG0187 Gene3D:3.40.50.670 KO:K03164 EMBL:DS496159
RefSeq:XP_001700298.1 ProteinModelPortal:A8JD08 STRING:A8JD08
EnsemblPlants:EDO98265 GeneID:5725848 KEGG:cre:CHLREDRAFT_38019
ProtClustDB:PLN03128 BioCyc:CHLAMY:CHLREDRAFT_38019-MONOMER
Uniprot:A8JD08
Length = 1167
Score = 93 (37.8 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 22/53 (41%), Positives = 33/53 (62%)
Query: 104 PRGLHHLVYEILDNAVD-EAQAGYASNIEVAL-LADNSVSVADNGRGIPIDLH 154
P GL+ + EIL NA D + + I+V + A NS+ V +NG+GIP+D+H
Sbjct: 66 PPGLYKIFDEILVNAADNKVRDATMDTIKVDIDAATNSIRVWNNGKGIPVDVH 118
Score = 82 (33.9 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 22/74 (29%), Positives = 37/74 (50%)
Query: 348 LGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVR 407
+ + NSI T GGTH++ + + + ++ K SK K ++ V+ L ++
Sbjct: 311 VSFVNSISTQKGGTHVDYIVNQVVK--HATEKLSKKTT-KTAAIKPAMVKNHLWVFLNCY 367
Query: 408 VPNPEFEGQTKTRL 421
V NP F+ QTK L
Sbjct: 368 VENPAFDSQTKETL 381
>UNIPROTKB|Q8EYL9 [details] [associations]
symbol:LA_4194 "DNA gyrase subunit B" species:189518
"Leptospira interrogans serovar Lai str. 56601" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IBA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IBA]
[GO:0006265 "DNA topological change" evidence=IBA] [GO:0007059
"chromosome segregation" evidence=IBA] [GO:0009295 "nucleoid"
evidence=IBA] InterPro:IPR001241 InterPro:IPR003594
InterPro:IPR013506 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005694 GO:GO:0007059
GO:GO:0006261 Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0009295
GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719 KO:K02470
Gene3D:3.40.50.670 EMBL:AE010300 GenomeReviews:AE010300_GR
HSSP:P06786 RefSeq:NP_714374.1 ProteinModelPortal:Q8EYL9
GeneID:1153536 KEGG:lil:LA_4194 PATRIC:22389227
HOGENOM:HOG000040411 OMA:EATIESK ProtClustDB:CLSK575166
BioCyc:LINT189518:GJBB-3320-MONOMER Uniprot:Q8EYL9
Length = 711
Score = 110 (43.8 bits), Expect = 0.00043, Sum P(2) = 0.00043
Identities = 52/212 (24%), Positives = 93/212 (43%)
Query: 236 SKDRQGTRIRFWPDKQVFTTA-IQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQY 294
SK+ GT + F + + F I F+ + + ++++A NP L + K +
Sbjct: 246 SKEDHGTSVEFELNPKYFNNLDISFNVDLMKQYLQDIAMTNPGLEVQF------VFKGKK 299
Query: 295 NEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKD--VDGITIDLALQWCSDAYSDTMLGYAN 352
+Y F GL+E D+V ++ D G L L+ + L + N
Sbjct: 300 EKYKFKKGLDEIFSH--------SDLVYYKMDYVAPGSASQLHLETYLVIGQNKNLTWVN 351
Query: 353 SIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVK-DKDISLSGEH--VREGLTCIISVRVP 409
SI GG+ IE ++ R + + KKS+ V +K + S VR ++ R+
Sbjct: 352 SIFAPQGGSAIEYLE---NRICDEVRKKSQIVALEKKLKTSSTRNDVRNCFHMYVNARLL 408
Query: 410 NPEFEGQTKTRLGNP---EVRKVVDQSVQEYL 438
NP F+ Q K+ L N ++R VD+ + +++
Sbjct: 409 NPRFKSQDKSYLINDLNEDIRNAVDKHLDKFI 440
Score = 58 (25.5 bits), Expect = 0.00043, Sum P(2) = 0.00043
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 128 SNIEVALLADNS-VSVADNGRGIP 150
S + V L +D V++ADNGRGIP
Sbjct: 100 SKLIVQLSSDRKCVTIADNGRGIP 123
>WB|WBGene00010785 [details] [associations]
symbol:top-2 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0006265 "DNA topological change" evidence=IEA]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0051301 "cell division" evidence=IMP] [GO:0000910
"cytokinesis" evidence=IMP] InterPro:IPR001241 InterPro:IPR002205
InterPro:IPR003594 InterPro:IPR013506 InterPro:IPR013757
InterPro:IPR013758 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521 Pfam:PF02518
PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387 SMART:SM00433
SMART:SM00434 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0009792 GO:GO:0006261 GO:GO:0000910 Gene3D:3.30.565.10
SUPFAM:SSF55874 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 Gene3D:3.30.1360.40
InterPro:IPR024946 GO:GO:0000819 GO:GO:0006312 GO:GO:0070683
GO:GO:0000712 GO:GO:0000795 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
eggNOG:COG0187 Gene3D:3.40.50.670 PROSITE:PS50880 KO:K03164
HOGENOM:HOG000216693 GeneTree:ENSGT00390000016222 EMBL:Z49069
EMBL:Z70213 PIR:T23620 RefSeq:NP_496536.1 ProteinModelPortal:Q23670
SMR:Q23670 DIP:DIP-27416N IntAct:Q23670 MINT:MINT-227249
STRING:Q23670 PaxDb:Q23670 EnsemblMetazoa:K12D12.1 GeneID:174825
KEGG:cel:CELE_K12D12.1 CTD:174825 WormBase:K12D12.1
InParanoid:Q23670 OMA:ADNKQND NextBio:885666 Uniprot:Q23670
Length = 1520
Score = 92 (37.4 bits), Expect = 0.00057, Sum P(3) = 0.00057
Identities = 43/189 (22%), Positives = 84/189 (44%)
Query: 234 VDSKDRQGTRIRFWPDKQVFTTAIQFDH--NTIAGRIRELAFLNPKLTIALRKEDSDPEK 291
V S D T+I F PD F D + +A R ++A + + + L + P K
Sbjct: 242 VKSTDEDFTKITFSPDLAKFKMKELDDDICHLMARRAYDVAGSSKGVAVFLNGKRI-PIK 300
Query: 292 NQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITIDLALQWCSDAYSDTMLGYA 351
+ +Y ++ Y N + +PL + + + D + LAL + + +
Sbjct: 301 G-FEDY-----VQMYTSQFNNEGEPLK--IAYEQVGDRWQVALALS--EKGFQQ--VSFV 348
Query: 352 NSIRTIDGGTHIEGVKASLT-RTLNSLGKK-SKTVKDKDISLSGEHVREGLTCIISVRVP 409
NSI T GG H++ V + + ++S+ +K +KT +++ ++ + ++ +
Sbjct: 349 NSIATTKGGRHVDYVADQMVAKFIDSIKRKLTKT----SMNIKPFQIKNHMWVFVNCLIE 404
Query: 410 NPEFEGQTK 418
NP F+ QTK
Sbjct: 405 NPTFDSQTK 413
Score = 83 (34.3 bits), Expect = 0.00057, Sum P(3) = 0.00057
Identities = 20/51 (39%), Positives = 30/51 (58%)
Query: 106 GLHHLVYEILDNAVDEAQAGYASN-IEVALLAD-NSVSVADNGRGIPIDLH 154
GL+ + EIL NA D Q N I++ + + N +SV +NG+GIP+ H
Sbjct: 115 GLYKIYDEILVNAADNKQRDPKMNTIKITINKEKNEISVYNNGKGIPVTQH 165
Score = 44 (20.5 bits), Expect = 0.00057, Sum P(3) = 0.00057
Identities = 17/53 (32%), Positives = 26/53 (49%)
Query: 477 SVLRSSSLPG--KLADCSSTTPEESE---IFIVEGDSA-----GGSAKQGRDR 519
S ++S L G KL D + + S+ + + EGDSA G + GRD+
Sbjct: 463 SKTKTSKLKGIPKLEDANDAGTKNSQQCTLILTEGDSAKTLAVSGLSVVGRDK 515
>UNIPROTKB|Q23670 [details] [associations]
symbol:K12D12.1 "Probable DNA topoisomerase 2" species:6239
"Caenorhabditis elegans" [GO:0009295 "nucleoid" evidence=IBA]
[GO:0007059 "chromosome segregation" evidence=IBA] [GO:0006312
"mitotic recombination" evidence=IBA] [GO:0006265 "DNA topological
change" evidence=IBA] [GO:0006261 "DNA-dependent DNA replication"
evidence=IBA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IBA] [GO:0000819 "sister
chromatid segregation" evidence=IBA] [GO:0000795 "synaptonemal
complex" evidence=IBA] [GO:0000712 "resolution of meiotic
recombination intermediates" evidence=IBA] InterPro:IPR001241
InterPro:IPR002205 InterPro:IPR003594 InterPro:IPR013506
InterPro:IPR013757 InterPro:IPR013758 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521
Pfam:PF02518 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 SMART:SM00434 Pfam:PF01751 InterPro:IPR006171
GO:GO:0005524 GO:GO:0009792 GO:GO:0006261 GO:GO:0000910
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0000819 GO:GO:0006312
GO:GO:0070683 GO:GO:0000712 GO:GO:0000795 GO:GO:0006265
GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
eggNOG:COG0187 Gene3D:3.40.50.670 PROSITE:PS50880 KO:K03164
HOGENOM:HOG000216693 GeneTree:ENSGT00390000016222 EMBL:Z49069
EMBL:Z70213 PIR:T23620 RefSeq:NP_496536.1 ProteinModelPortal:Q23670
SMR:Q23670 DIP:DIP-27416N IntAct:Q23670 MINT:MINT-227249
STRING:Q23670 PaxDb:Q23670 EnsemblMetazoa:K12D12.1 GeneID:174825
KEGG:cel:CELE_K12D12.1 CTD:174825 WormBase:K12D12.1
InParanoid:Q23670 OMA:ADNKQND NextBio:885666 Uniprot:Q23670
Length = 1520
Score = 92 (37.4 bits), Expect = 0.00057, Sum P(3) = 0.00057
Identities = 43/189 (22%), Positives = 84/189 (44%)
Query: 234 VDSKDRQGTRIRFWPDKQVFTTAIQFDH--NTIAGRIRELAFLNPKLTIALRKEDSDPEK 291
V S D T+I F PD F D + +A R ++A + + + L + P K
Sbjct: 242 VKSTDEDFTKITFSPDLAKFKMKELDDDICHLMARRAYDVAGSSKGVAVFLNGKRI-PIK 300
Query: 292 NQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITIDLALQWCSDAYSDTMLGYA 351
+ +Y ++ Y N + +PL + + + D + LAL + + +
Sbjct: 301 G-FEDY-----VQMYTSQFNNEGEPLK--IAYEQVGDRWQVALALS--EKGFQQ--VSFV 348
Query: 352 NSIRTIDGGTHIEGVKASLT-RTLNSLGKK-SKTVKDKDISLSGEHVREGLTCIISVRVP 409
NSI T GG H++ V + + ++S+ +K +KT +++ ++ + ++ +
Sbjct: 349 NSIATTKGGRHVDYVADQMVAKFIDSIKRKLTKT----SMNIKPFQIKNHMWVFVNCLIE 404
Query: 410 NPEFEGQTK 418
NP F+ QTK
Sbjct: 405 NPTFDSQTK 413
Score = 83 (34.3 bits), Expect = 0.00057, Sum P(3) = 0.00057
Identities = 20/51 (39%), Positives = 30/51 (58%)
Query: 106 GLHHLVYEILDNAVDEAQAGYASN-IEVALLAD-NSVSVADNGRGIPIDLH 154
GL+ + EIL NA D Q N I++ + + N +SV +NG+GIP+ H
Sbjct: 115 GLYKIYDEILVNAADNKQRDPKMNTIKITINKEKNEISVYNNGKGIPVTQH 165
Score = 44 (20.5 bits), Expect = 0.00057, Sum P(3) = 0.00057
Identities = 17/53 (32%), Positives = 26/53 (49%)
Query: 477 SVLRSSSLPG--KLADCSSTTPEESE---IFIVEGDSA-----GGSAKQGRDR 519
S ++S L G KL D + + S+ + + EGDSA G + GRD+
Sbjct: 463 SKTKTSKLKGIPKLEDANDAGTKNSQQCTLILTEGDSAKTLAVSGLSVVGRDK 515
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.316 0.133 0.379 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 538 478 0.00079 119 3 11 22 0.42 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 67
No. of states in DFA: 613 (65 KB)
Total size of DFA: 261 KB (2139 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 37.14u 0.13s 37.27t Elapsed: 00:00:02
Total cpu time: 37.16u 0.13s 37.29t Elapsed: 00:00:02
Start: Mon May 20 18:27:05 2013 End: Mon May 20 18:27:07 2013