BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009294
(538 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5YLB4|GYRB_NICBE DNA gyrase subunit B, chloroplastic/mitochondrial OS=Nicotiana
benthamiana GN=GYRB PE=2 SV=1
Length = 731
Score = 815 bits (2104), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 426/545 (78%), Positives = 471/545 (86%), Gaps = 17/545 (3%)
Query: 4 LLLKAPYLHIRVLMASRCFC---------SFSS------SLFFKPRTNFAIRGVSSQVLT 48
LL P H MASR SFSS S+ PR +R +S +L
Sbjct: 3 LLKPFPLQHSLRCMASRFLLHSHYHTHTLSFSSISLSRPSIVLNPRVINKLRRLSDAILI 62
Query: 49 RSNVVLPRAFLSSSIATEAFKENPVSKTYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLH 108
R N+V RAF+SSS TEAF+EN SK YGSEQIQVLEGL+ VRKRP MYIGSTGPRGLH
Sbjct: 63 R-NMVSLRAFMSSSTTTEAFQENTKSKGYGSEQIQVLEGLDPVRKRPGMYIGSTGPRGLH 121
Query: 109 HLVYEILDNAVDEAQAGYASNIEVALLADNSVSVADNGRGIPIDLHPATNKSALETVLTV 168
HLVYEILDNAVDEAQAG+A+ I+V L ADNSVS+ADNGRGIP +LHP T KS+LETVLTV
Sbjct: 122 HLVYEILDNAVDEAQAGFATKIDVVLHADNSVSIADNGRGIPTELHPVTKKSSLETVLTV 181
Query: 169 LHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLT 228
LHAGGKFGGSSSGY+VSGGLHGVGLSVVNALS++LEVT+WRDG EY QKYSRGKP+TTL
Sbjct: 182 LHAGGKFGGSSSGYNVSGGLHGVGLSVVNALSQALEVTIWRDGKEYQQKYSRGKPITTLI 241
Query: 229 CHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSD 288
CH LPV+ +DRQGT IRFWPDK+VFTT +QFD+NTIAGRIRELAFLNP+LTIAL+KED D
Sbjct: 242 CHDLPVEMRDRQGTAIRFWPDKEVFTTEMQFDYNTIAGRIRELAFLNPELTIALKKEDID 301
Query: 289 PEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITIDLALQWCSDAYSDTML 348
PEK Q NEYF+AGGL EYV+WLN DKKPLHDV+GFRK+ DGITID+ALQWCSDAYSDTML
Sbjct: 302 PEKIQCNEYFYAGGLVEYVKWLNADKKPLHDVLGFRKEADGITIDMALQWCSDAYSDTML 361
Query: 349 GYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRV 408
GYANSIRTIDGGTHI+GVKA+LTR LN+LGKKSKT+K+KDISLSGEHVREGLTC+ISV+V
Sbjct: 362 GYANSIRTIDGGTHIDGVKAALTRILNNLGKKSKTIKEKDISLSGEHVREGLTCVISVKV 421
Query: 409 PNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKR 468
PNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSL+ALKAALAAKR
Sbjct: 422 PNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLNALKAALAAKR 481
Query: 469 ARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQVIINPL 528
AR+LVRQKSVL+SSSLPGKLADCS+T PEE+EIFIVEGDSAGGSAKQGRDRRFQ I+ PL
Sbjct: 482 ARELVRQKSVLKSSSLPGKLADCSATNPEEAEIFIVEGDSAGGSAKQGRDRRFQAIL-PL 540
Query: 529 QESIF 533
+ I
Sbjct: 541 RGKIL 545
>sp|Q94BZ7|GYRBM_ARATH DNA gyrase subunit B, mitochondrial OS=Arabidopsis thaliana
GN=GYRBM PE=2 SV=1
Length = 732
Score = 784 bits (2025), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 399/500 (79%), Positives = 444/500 (88%), Gaps = 6/500 (1%)
Query: 34 RTNFAIRGVSSQVLTRSNVVLPRAFLSSSIATEAFKENPVSKTYGSEQIQVLEGLEAVRK 93
R F + V SQ L + N + R FLS TEA +E SK Y SEQIQVLEGL+ VRK
Sbjct: 53 RLKFQLTSVLSQRLIQRNAISSR-FLS----TEASQETTTSKGYSSEQIQVLEGLDPVRK 107
Query: 94 RPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLADNSVSVADNGRGIPIDL 153
RP MYIGSTG RGLHHLVYEILDNA+DEAQAGYAS ++V L AD SVSV DNGRGIP DL
Sbjct: 108 RPGMYIGSTGSRGLHHLVYEILDNAIDEAQAGYASKVDVVLHADGSVSVVDNGRGIPTDL 167
Query: 154 HPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGME 213
HPAT KS+LETVLTVLHAGGKFGG+SSGYSVSGGLHGVGLSVVNALSE+LEV+VWRDGME
Sbjct: 168 HPATKKSSLETVLTVLHAGGKFGGTSSGYSVSGGLHGVGLSVVNALSEALEVSVWRDGME 227
Query: 214 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 273
+ Q YSRGKP+TTLTC VLP++SK +GT IRFWPDK+VFTTAI+FDHNTIAGRIRELAF
Sbjct: 228 HKQNYSRGKPITTLTCRVLPLESKGTKGTSIRFWPDKEVFTTAIEFDHNTIAGRIRELAF 287
Query: 274 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITID 333
LNPK+TI+L+KED DPEK QY+EY FAGGL EYV WLNTDK P+HDV+GFR++++G T+D
Sbjct: 288 LNPKVTISLKKEDDDPEKTQYSEYSFAGGLTEYVSWLNTDKNPIHDVLGFRREINGATVD 347
Query: 334 LALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSG 393
+ALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLN+L KKSKTVK+KDISLSG
Sbjct: 348 VALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNTLAKKSKTVKEKDISLSG 407
Query: 394 EHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSIL 453
EHVREGLTCI+SV+VPNPEFEGQTKTRLGNPEVRK+VDQSVQEYLTE+LELHPD+L+SI+
Sbjct: 408 EHVREGLTCIVSVKVPNPEFEGQTKTRLGNPEVRKIVDQSVQEYLTEFLELHPDILESII 467
Query: 454 SKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSA 513
SKSL+A KAALAAKRAR+LVR KSVL+SSSLPGKLADCSST PE SEIFIVEGDSAGGSA
Sbjct: 468 SKSLNAYKAALAAKRARELVRSKSVLKSSSLPGKLADCSSTDPEVSEIFIVEGDSAGGSA 527
Query: 514 KQGRDRRFQVIINPLQESIF 533
KQGRDRRFQ I+ PL+ I
Sbjct: 528 KQGRDRRFQAIL-PLRGKIL 546
>sp|Q9SS38|GYRBP_ARATH DNA gyrase subunit B, chloroplastic OS=Arabidopsis thaliana
GN=GYRBC PE=2 SV=3
Length = 730
Score = 769 bits (1985), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 399/501 (79%), Positives = 449/501 (89%), Gaps = 3/501 (0%)
Query: 33 PRTNFAIRGVSSQVLTRSNVVLPRAFLSSSIATEAFKENPVSKTYGSEQIQVLEGLEAVR 92
PR F + V SQ L + N V P++F+SS++ E+ +E+ SK Y SE IQVLEGL+ VR
Sbjct: 47 PRIKFQLANVFSQRLVQRNAVSPKSFMSSTM--ESLQESSTSKDYSSEHIQVLEGLDPVR 104
Query: 93 KRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLADNSVSVADNGRGIPID 152
KRP MYIGSTG RGLHHLVYEILDNA+DEAQAG+AS I+V L +D+SVS++DNGRGIP D
Sbjct: 105 KRPGMYIGSTGSRGLHHLVYEILDNAIDEAQAGFASKIDVVLHSDDSVSISDNGRGIPTD 164
Query: 153 LHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGM 212
LHPAT KS+LETVLTVLHAGGKFGG SSGYSVSGGLHGVGLSVVNALSE+LEV V RDGM
Sbjct: 165 LHPATGKSSLETVLTVLHAGGKFGGKSSGYSVSGGLHGVGLSVVNALSEALEVIVRRDGM 224
Query: 213 EYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELA 272
E+ QKYSRGKPVTTLTCHVLP +S+ QGT IRFWPDK+VFTTAIQFDHNTIAGRIRELA
Sbjct: 225 EFQQKYSRGKPVTTLTCHVLPPESRGTQGTCIRFWPDKEVFTTAIQFDHNTIAGRIRELA 284
Query: 273 FLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITI 332
FLNPK+TI+L+KED DPE++ Y+EYF+AGGL EYV WLNTDKKPLHDV+GFRK+++G T+
Sbjct: 285 FLNPKVTISLKKEDDDPERDVYSEYFYAGGLTEYVSWLNTDKKPLHDVLGFRKEINGSTV 344
Query: 333 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 392
D++LQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSL KK K +K+KDISLS
Sbjct: 345 DVSLQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLAKKLKVIKEKDISLS 404
Query: 393 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 452
GEHVREGLTCI+SV+VPNPEFEGQTKTRLGNPEVRK+VDQSVQEYLTEYLELHPDVL+SI
Sbjct: 405 GEHVREGLTCIVSVKVPNPEFEGQTKTRLGNPEVRKIVDQSVQEYLTEYLELHPDVLESI 464
Query: 453 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 512
+SKSL+A KAALAAKRAR+LVR KSVL+SSSLPGKLADCSST P ESEIFIVEGDSAGGS
Sbjct: 465 ISKSLNAYKAALAAKRARELVRSKSVLKSSSLPGKLADCSSTDPAESEIFIVEGDSAGGS 524
Query: 513 AKQGRDRRFQVIINPLQESIF 533
AKQGRDRRFQ I+ PL+ I
Sbjct: 525 AKQGRDRRFQAIL-PLRGKIL 544
>sp|Q5NBJ3|GYRB_ORYSJ DNA gyrase subunit B, chloroplastic/mitochondrial OS=Oryza sativa
subsp. japonica GN=GYRB PE=2 SV=1
Length = 729
Score = 713 bits (1841), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/483 (75%), Positives = 419/483 (86%), Gaps = 2/483 (0%)
Query: 51 NVVLPRAFLSSSIATEAFKENPVSKTYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHL 110
N V RAF++S+ A+EA +E V+ Y + +QVLE L+ VR RP MYIGSTG RGLHHL
Sbjct: 63 NGVAVRAFMASTAASEAMQEKRVAGEYTAANVQVLEALDGVRTRPGMYIGSTGSRGLHHL 122
Query: 111 VYEILDNAVDEAQAGYASNIEVALLADNSVSVADNGRGIPIDLHPATNKSALETVLTVLH 170
VYEILDNAVDEAQAGYA+ ++V L DNSVSV DNGRGIP D+HP T KS +ETVLT++H
Sbjct: 123 VYEILDNAVDEAQAGYATKVDVILHGDNSVSVTDNGRGIPTDIHPQTKKSCVETVLTLMH 182
Query: 171 AGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCH 230
AGGKFGGS SGY+VSGGLHGVGLSVVNALSE+LEVTVWRDG EY Q YSRGK +T LT
Sbjct: 183 AGGKFGGSKSGYTVSGGLHGVGLSVVNALSEALEVTVWRDGKEYRQNYSRGKAITMLTSR 242
Query: 231 VLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPE 290
L +S RQGTRIRFWPDK +FTT + FD NTIAGRIRELAFLNP+LTIAL KE+ D +
Sbjct: 243 TLSDESSSRQGTRIRFWPDKHIFTTTMDFDFNTIAGRIRELAFLNPELTIALTKEEDDLQ 302
Query: 291 KNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITIDLALQWCSDAYSDTMLGY 350
Q+NEY +AGGL EYV+WLNTDKK LHD + FRK++DGIT+D++LQWCSD+YSDT+LGY
Sbjct: 303 V-QHNEYCYAGGLVEYVKWLNTDKKSLHDPIAFRKEMDGITVDVSLQWCSDSYSDTVLGY 361
Query: 351 ANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPN 410
ANSIRTIDGGTHI+G+K SLTRT+N+ KKSKT+KDKDISLSGEHVREG+TCII+V+VPN
Sbjct: 362 ANSIRTIDGGTHIDGLKTSLTRTINNFAKKSKTLKDKDISLSGEHVREGMTCIIAVKVPN 421
Query: 411 PEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRAR 470
PEFEGQTKTRLGNPEVR++V+QSVQE LTEYLELHPDVLDSILSKSL+ALKAALAAKRAR
Sbjct: 422 PEFEGQTKTRLGNPEVRRIVEQSVQENLTEYLELHPDVLDSILSKSLNALKAALAAKRAR 481
Query: 471 DLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQVIINPLQE 530
+LVR KSVL+SSSLPGKLADC+S+ PEESEIFIVEGDSAGGSAKQGRDR+FQ I+ PL+
Sbjct: 482 ELVRTKSVLKSSSLPGKLADCASSDPEESEIFIVEGDSAGGSAKQGRDRKFQAIL-PLRG 540
Query: 531 SIF 533
I
Sbjct: 541 KIL 543
>sp|P77966|GYRB_SYNY3 DNA gyrase subunit B OS=Synechocystis sp. (strain PCC 6803 /
Kazusa) GN=gyrB PE=3 SV=1
Length = 1078
Score = 501 bits (1291), Expect = e-141, Method: Compositional matrix adjust.
Identities = 265/442 (59%), Positives = 342/442 (77%), Gaps = 12/442 (2%)
Query: 73 VSKTYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEV 132
+ YG++QIQVLEGLE VRKRP MYIGSTGP+GLHHLVYE++DNA+DEA AGY ++IE+
Sbjct: 4 TTTNYGADQIQVLEGLEPVRKRPGMYIGSTGPKGLHHLVYEVVDNAIDEALAGYCTHIEI 63
Query: 133 ALLADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVG 192
+ AD SV+V DNGRGIP D+HP T +SALETVLTVLHAGGKFGG VSGGLHGVG
Sbjct: 64 DINADGSVTVVDNGRGIPTDIHPTTGRSALETVLTVLHAGGKFGGGGY--KVSGGLHGVG 121
Query: 193 LSVVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQV 252
+SVVNALSE +EV VWR G E+ Q++ RG P+ TL + GT++ F PD Q+
Sbjct: 122 VSVVNALSEWVEVKVWRQGKEHFQRFERGNPIGTLEA---TPNEGHSTGTQVSFLPDTQI 178
Query: 253 FTTAIQFDHNTIAGRIRELAFLNP--KLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWL 310
F I+FD++T+A R++ELA+LN ++T R+ DS E+ ++++ GG+ EYV ++
Sbjct: 179 FKDGIEFDYHTLASRLKELAYLNAGVRITFGDRRADSLKEE----QFYYEGGIREYVTYM 234
Query: 311 NTDKKPLHDVVGFRK-DVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKAS 369
TDK PLH+ + + + + + +++ALQWC DAYSDT+LG+AN+IRTIDGGTH+EG+KA
Sbjct: 235 TTDKTPLHEEIIYTSGEKNDVQVEVALQWCVDAYSDTLLGFANNIRTIDGGTHLEGLKAV 294
Query: 370 LTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKV 429
LTRTLNS+ +K +KD D +L GE++REGLT +ISV+VP+PEFEGQTKT+LGN EVR +
Sbjct: 295 LTRTLNSVARKRNKLKDGDSNLGGENIREGLTGVISVKVPDPEFEGQTKTKLGNTEVRGI 354
Query: 430 VDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLA 489
VD V E LTE+LE +P V D+I+ K++ A KAA AA+RAR+LVR+KSVL SS+LPGKLA
Sbjct: 355 VDTLVGEALTEFLEFNPGVADAIIEKAVQAFKAAEAARRARELVRRKSVLESSTLPGKLA 414
Query: 490 DCSSTTPEESEIFIVEGDSAGG 511
DCSS P ESEIFIVEGDSAGG
Sbjct: 415 DCSSKDPSESEIFIVEGDSAGG 436
>sp|P77993|GYRB_THEMA DNA gyrase subunit B OS=Thermotoga maritima (strain ATCC 43589 /
MSB8 / DSM 3109 / JCM 10099) GN=gyrB PE=3 SV=2
Length = 636
Score = 473 bits (1218), Expect = e-132, Method: Compositional matrix adjust.
Identities = 245/465 (52%), Positives = 328/465 (70%), Gaps = 22/465 (4%)
Query: 77 YGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLA 136
Y +E I+VL+GLE VR RP MYIGSTG RGLHHLVYE++DN+VDEA AGY I V L
Sbjct: 4 YSAESIKVLKGLEPVRMRPGMYIGSTGKRGLHHLVYEVVDNSVDEALAGYCDWIRVTLHE 63
Query: 137 DNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVV 196
D SV V DNGRGIP+D+HP +SALE V TVLHAGGKF S Y +SGGLHGVG+SVV
Sbjct: 64 DGSVEVEDNGRGIPVDIHPEEGRSALEVVFTVLHAGGKF--SKDSYKISGGLHGVGVSVV 121
Query: 197 NALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTA 256
NALSE LEV V RDG Y Q+Y RGKPVT + + D+ GT +RF PD +F+
Sbjct: 122 NALSEWLEVRVHRDGKIYRQRYERGKPVTPVEV----IGETDKHGTIVRFKPDPLIFSET 177
Query: 257 IQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKP 316
+FD + + R+RE+AFL P L I E D + + F GG+ EYV++LN KK
Sbjct: 178 -EFDPDILEHRLREIAFLVPGLKI----EFEDRINGEKKTFKFDGGIVEYVKYLNRGKKA 232
Query: 317 LHDVVGFRKDV--------DGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKA 368
LHDV+ ++ D + +++A Q+ +D+YS+ ++ +AN+I+T+DGGTH+ K+
Sbjct: 233 LHDVIHIKRTEKVKTKNGEDEVIVEIAFQY-TDSYSEDIVSFANTIKTVDGGTHVTAFKS 291
Query: 369 SLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRK 428
+LTR +N GKK +K KD S GE VREGLT +ISV V NPEFEGQTK++LGN EV++
Sbjct: 292 TLTRLMNEYGKKHNFLK-KDDSFQGEDVREGLTAVISVYVKNPEFEGQTKSKLGNEEVKE 350
Query: 429 VVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKL 488
V ++++E L + + +P+++ +ILSK +S +A AAKRAR++VR+K+VL++++LPGKL
Sbjct: 351 AVTKAMREELKKIFDANPELVKTILSKIMSTKQAREAAKRAREMVRRKNVLQNTTLPGKL 410
Query: 489 ADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQVIINPLQESIF 533
ADCSST E++E+FIVEGDSAGGSAKQ RDR FQ ++ P++ I
Sbjct: 411 ADCSSTHREKTELFIVEGDSAGGSAKQARDREFQAVL-PIRGKIL 454
>sp|P94604|GYRB_CLOAB DNA gyrase subunit B OS=Clostridium acetobutylicum (strain ATCC 824
/ DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) GN=gyrB
PE=3 SV=2
Length = 637
Score = 456 bits (1174), Expect = e-127, Method: Compositional matrix adjust.
Identities = 237/463 (51%), Positives = 325/463 (70%), Gaps = 17/463 (3%)
Query: 74 SKTYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVA 133
++ Y QIQVLEGLEAVRKRP MYIGSTG RGLHHLVYEI+DN++DEA AGY S+I+V
Sbjct: 5 NEIYDESQIQVLEGLEAVRKRPGMYIGSTGTRGLHHLVYEIVDNSIDEALAGYCSHIKVF 64
Query: 134 LLADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGL 193
+ DNSV+V+D+GRG+PI +H K +E ++T+LHAGGKFGG + Y VSGGLHGVG
Sbjct: 65 IHKDNSVTVSDDGRGMPIGIHHKMKKPTVEVIMTILHAGGKFGGGA--YRVSGGLHGVGA 122
Query: 194 SVVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVF 253
SVVNALSE+ EV V +G + Q Y RGK + + D GT+I F PD ++F
Sbjct: 123 SVVNALSETCEVEVKTEGHIWKQTYHRGKVASPFE----KIGDSDEHGTKIYFKPDPEIF 178
Query: 254 TTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYF-FAGGLEEYVQWLNT 312
++D++T++ R+RELAFLN + I L E D NE F + GGL+ +V +LN
Sbjct: 179 EDT-EYDYDTLSQRLRELAFLNKGIKIELTDERHDK-----NEIFHYEGGLKSFVSYLNR 232
Query: 313 DKKPL-HDVVGFRKDVD-GITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASL 370
+K+ + + + +D ++++ALQ+ +D Y++ + +AN+I TI+GGTH+ G K +L
Sbjct: 233 NKEVVFKEPIYVEGSIDSNYSVEIALQY-NDGYNENIFSFANNIHTIEGGTHLAGFKTAL 291
Query: 371 TRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVV 430
TR +N KK +K+ D +LSGE +REGLT ++SV++ P+FEGQTKT+LGN EVR +V
Sbjct: 292 TRVINDYAKKFGYLKENDKNLSGEDIREGLTAVVSVKLTEPQFEGQTKTKLGNTEVRGIV 351
Query: 431 DQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLAD 490
D + E ++ YLE +P + ++ K+L A +A AAK+AR++ R+KSVL S+SLPGKLAD
Sbjct: 352 DSIISERVSTYLEENPQIGKLVIDKALVASRAREAAKKAREITRRKSVLESTSLPGKLAD 411
Query: 491 CSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQVIINPLQESIF 533
CSS EE EI+IVEGDSAGGSAKQGR+RRFQ I+ PL+ I
Sbjct: 412 CSSKDAEECEIYIVEGDSAGGSAKQGRNRRFQAIL-PLRGKIM 453
>sp|D4GZ01|GYRB_HALVD DNA gyrase subunit B OS=Haloferax volcanii (strain ATCC 29605 / DSM
3757 / JCM 8879 / NBRC 14742 / NCIMB 2012 / VKM B-1768 /
DS2) GN=gyrB PE=1 SV=1
Length = 639
Score = 452 bits (1162), Expect = e-126, Method: Compositional matrix adjust.
Identities = 241/459 (52%), Positives = 317/459 (69%), Gaps = 11/459 (2%)
Query: 77 YGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLA 136
YG+ QIQVLEGLEAVRKRPAMYIGST RGLHHLVYE++DN++DEA AG+ IEVAL
Sbjct: 7 YGAGQIQVLEGLEAVRKRPAMYIGSTDSRGLHHLVYEVVDNSIDEALAGHCDAIEVALHE 66
Query: 137 DNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVV 196
D SVSV DNGRGIP+D H ++ ALE ++TVLHAGGKF S Y VSGGLHGVG+SVV
Sbjct: 67 DGSVSVTDNGRGIPVDTHEQYDRPALEVIMTVLHAGGKFDNKS--YQVSGGLHGVGVSVV 124
Query: 197 NALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTA 256
NALS LEV V RDG + ++ G+P V ++ + GT IRFWPD +F T
Sbjct: 125 NALSSELEVEVKRDGAVWTHRFEVGEPQVEEFERVRDLEPGEDTGTTIRFWPDDGIFETT 184
Query: 257 IQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKP 316
+FD T+ R+RELAFLN + I+L SD ++ + + F GG+ E+V++LN K
Sbjct: 185 -EFDFKTLENRLRELAFLNSGVEISL----SDERTDESSTFLFEGGIREFVEYLNETKTA 239
Query: 317 LHD-VVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLN 375
LHD V+ + + +GI +++A+Q +D ++ +AN+I T +GGTH+ G K +LTR +N
Sbjct: 240 LHDDVIYYDDESEGIEVEIAMQ-ATDELQGSIHAFANNINTREGGTHLTGFKTALTRVVN 298
Query: 376 SLGKKSKTVKDKD-ISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSV 434
+ D D +L GE VREGLT +IS++ P+P+FEGQTKT+LGN EVR +V+
Sbjct: 299 DYANTHDMLDDLDGDNLRGEDVREGLTAVISIKHPDPQFEGQTKTKLGNSEVRGIVESVT 358
Query: 435 QEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSST 494
+ L + E +PD +I+SK++ A +A AAK+A +L R+KS L S+SLPGKLADC S
Sbjct: 359 HQQLGTFFEENPDTATAIISKAVEAARARKAAKQAEELTRRKSALESTSLPGKLADCQSR 418
Query: 495 TPEESEIFIVEGDSAGGSAKQGRDRRFQVIINPLQESIF 533
P ESE+FIVEGDSAGGSAKQGRDR+FQ I+ PL+ I
Sbjct: 419 DPAESELFIVEGDSAGGSAKQGRDRKFQAIL-PLKGKIL 456
>sp|P05652|GYRB_BACSU DNA gyrase subunit B OS=Bacillus subtilis (strain 168) GN=gyrB PE=3
SV=1
Length = 638
Score = 448 bits (1153), Expect = e-125, Method: Compositional matrix adjust.
Identities = 234/464 (50%), Positives = 316/464 (68%), Gaps = 11/464 (2%)
Query: 76 TYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALL 135
+Y QIQVLEGLEAVRKRP MYIGST +GLHHLV+EI+DN++DEA AGY ++I + +
Sbjct: 7 SYDENQIQVLEGLEAVRKRPGMYIGSTNSKGLHHLVWEIVDNSIDEALAGYCTDINIQIE 66
Query: 136 ADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSV 195
DNS++V DNGRGIP+ +H + A+E ++TVLHAGGKF GS GY VSGGLHGVG SV
Sbjct: 67 KDNSITVVDNGRGIPVGIHEKMGRPAVEVIMTVLHAGGKFDGS--GYKVSGGLHGVGASV 124
Query: 196 VNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTT 255
VNALS L+VTV RDG + Q Y RG PVT L + D GT F PD ++F+
Sbjct: 125 VNALSTELDVTVHRDGKIHRQTYKRGVPVTDLEI----IGETDHTGTTTHFVPDPEIFSE 180
Query: 256 AIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKK 315
++D++ +A R+RELAFL + I + ED + + NEY + GG++ YV++LN K+
Sbjct: 181 TTEYDYDLLANRVRELAFLTKGVNITI--EDKREGQERKNEYHYEGGIKSYVEYLNRSKE 238
Query: 316 PLHDV-VGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTL 374
+H+ + + DGIT+++ALQ+ +D+Y+ + + N+I T +GGTH G K LTR +
Sbjct: 239 VVHEEPIYIEGEKDGITVEVALQY-NDSYTSNIYSFTNNINTYEGGTHEAGFKTGLTRVI 297
Query: 375 NSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSV 434
N +K +K+ D +LSG+ VREGLT IIS++ P+P+FEGQTKT+LGN E R + D
Sbjct: 298 NDYARKKGLIKENDPNLSGDDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDTLF 357
Query: 435 QEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSST 494
+ ++ +PD I+ K L A +A +AAK+AR+L R+KS L S+LPGKLADCSS
Sbjct: 358 STAMETFMLENPDAAKKIVDKGLMAARARMAAKKARELTRRKSALEISNLPGKLADCSSK 417
Query: 495 TPEESEIFIVEGDSAGGSAKQGRDRRFQVIINPLQESIFAFASA 538
P SE++IVEGDSAGGSAKQGRDR FQ I+ PL+ I A
Sbjct: 418 DPSISELYIVEGDSAGGSAKQGRDRHFQAIL-PLRGKILNVEKA 460
>sp|P21558|GYRB_HALL2 DNA gyrase subunit B OS=Haloferax lucentense (strain DSM 14919 /
JCM 9276 / NCIMB 13854 / Aa 2.2) GN=gyrB PE=3 SV=1
Length = 639
Score = 446 bits (1147), Expect = e-124, Method: Compositional matrix adjust.
Identities = 239/459 (52%), Positives = 315/459 (68%), Gaps = 11/459 (2%)
Query: 77 YGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLA 136
YG+ QIQVLEGLEAVRKRPAMYIGST RGLHHLVYE++DN++DEA AG+ IEVAL
Sbjct: 7 YGAGQIQVLEGLEAVRKRPAMYIGSTDSRGLHHLVYEVVDNSIDEALAGHCDAIEVALHE 66
Query: 137 DNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVV 196
D SVSV DNGRGIP+ H ++ ALE ++TVLHAGGKF S Y VSGGLHGVG++VV
Sbjct: 67 DGSVSVTDNGRGIPVGTHEQYDRPALEVIMTVLHAGGKFDNKS--YQVSGGLHGVGVTVV 124
Query: 197 NALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTA 256
NALS LEV V DG + ++ G+P V ++ + GT IRFWPD +F T
Sbjct: 125 NALSSELEVEVKHDGAVWTHRFEVGEPQVEEFERVRDLEPGEDTGTTIRFWPDDGIFETT 184
Query: 257 IQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKP 316
+FD T+ R+RELAFLN + I+L SD ++ + + F GG+ E+V++LN K
Sbjct: 185 -EFDFKTLENRLRELAFLNSGVEISL----SDERTDESSTFLFEGGIREFVEYLNETKTA 239
Query: 317 LHD-VVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLN 375
LHD V+ + + +GI +++A+Q +D ++ +AN+I T +GGTH+ G K +LTR +N
Sbjct: 240 LHDDVIYYDDESEGIEVEIAMQ-ATDELQGSIHAFANNINTREGGTHLTGFKTALTRVVN 298
Query: 376 SLGKKSKTVKDKD-ISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSV 434
+ D D +L GE VREGLT +ISV+ P+P+FEGQTKT+LGN EVR +V+
Sbjct: 299 DYANSHDMLDDLDGDNLRGEDVREGLTAVISVKHPDPQFEGQTKTKLGNSEVRGIVESVT 358
Query: 435 QEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSST 494
+ L + E +PD +I+SK++ A +A AAK+A +L R+KS L S+SLPGKLADC S
Sbjct: 359 HQQLGTFFEENPDTATAIISKAVEAARARKAAKQAEELTRRKSALESTSLPGKLADCQSR 418
Query: 495 TPEESEIFIVEGDSAGGSAKQGRDRRFQVIINPLQESIF 533
P ESE+FIVEGDSAGGSAKQGRDR+FQ I+ PL+ I
Sbjct: 419 DPSESELFIVEGDSAGGSAKQGRDRKFQAIL-PLKGKIL 456
>sp|P0DG05|GYRB_STRPQ DNA gyrase subunit B OS=Streptococcus pyogenes serotype M3 (strain
SSI-1) GN=gyrB PE=3 SV=1
Length = 650
Score = 444 bits (1143), Expect = e-124, Method: Compositional matrix adjust.
Identities = 231/465 (49%), Positives = 328/465 (70%), Gaps = 11/465 (2%)
Query: 75 KTYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVAL 134
+ Y + QIQVLEGLEAVR RP MYIGST GLHHLV+EI+DN++DEA AG+AS+I+V +
Sbjct: 13 QEYDASQIQVLEGLEAVRMRPGMYIGSTAKEGLHHLVWEIVDNSIDEALAGFASHIKVFI 72
Query: 135 LADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLS 194
ADNS++V D+GRGIP+D+ T + A+ETV TVLHAGGKFGG S Y VSGGLHGVG S
Sbjct: 73 EADNSITVVDDGRGIPVDIQVKTGRPAVETVFTVLHAGGKFGGGS--YKVSGGLHGVGSS 130
Query: 195 VVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFT 254
VVNALS L+V V+++G ++Q++ RG V L + + D GT + F PD ++FT
Sbjct: 131 VVNALSTQLDVRVYKNGQIHYQEFKRGAVVADLEV----IGTTDVTGTTVHFTPDPEIFT 186
Query: 255 TAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDK 314
QFD++ +A RI+ELAFLN L I++ + S E+ ++ + + GG+ YV++LN K
Sbjct: 187 ETTQFDYSVLAKRIQELAFLNRGLKISITDKRSGMEQEEH--FHYEGGIGSYVEFLNDKK 244
Query: 315 KPLHDVVGFRK-DVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRT 373
+ + + +++GI +++A+Q+ + +Y +T++ +AN+I T +GGTH +G +A+LTR
Sbjct: 245 DVIFETPIYTDGELEGIAVEVAMQYTT-SYQETVMSFANNIHTHEGGTHEQGFRAALTRV 303
Query: 374 LNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQS 433
+N KK+K +K+ + +L+GE VREGLT +ISV+ PNP+FEGQTKT+LGN EV K+ ++
Sbjct: 304 INDYAKKNKILKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNRL 363
Query: 434 VQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSS 493
E +L +P V I+ K + A KA +AAKRAR++ R+KS L S+LPGKLADCSS
Sbjct: 364 FSEAFQRFLLENPQVARKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADCSS 423
Query: 494 TTPEESEIFIVEGDSAGGSAKQGRDRRFQVIINPLQESIFAFASA 538
++E+FIVEGDSAGGSAK GR+R FQ I+ P++ I A
Sbjct: 424 NDANQNELFIVEGDSAGGSAKSGRNREFQAIL-PIRGKILNVEKA 467
>sp|P0DG04|GYRB_STRP3 DNA gyrase subunit B OS=Streptococcus pyogenes serotype M3 (strain
ATCC BAA-595 / MGAS315) GN=gyrB PE=3 SV=1
Length = 650
Score = 444 bits (1143), Expect = e-124, Method: Compositional matrix adjust.
Identities = 231/465 (49%), Positives = 328/465 (70%), Gaps = 11/465 (2%)
Query: 75 KTYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVAL 134
+ Y + QIQVLEGLEAVR RP MYIGST GLHHLV+EI+DN++DEA AG+AS+I+V +
Sbjct: 13 QEYDASQIQVLEGLEAVRMRPGMYIGSTAKEGLHHLVWEIVDNSIDEALAGFASHIKVFI 72
Query: 135 LADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLS 194
ADNS++V D+GRGIP+D+ T + A+ETV TVLHAGGKFGG S Y VSGGLHGVG S
Sbjct: 73 EADNSITVVDDGRGIPVDIQVKTGRPAVETVFTVLHAGGKFGGGS--YKVSGGLHGVGSS 130
Query: 195 VVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFT 254
VVNALS L+V V+++G ++Q++ RG V L + + D GT + F PD ++FT
Sbjct: 131 VVNALSTQLDVRVYKNGQIHYQEFKRGAVVADLEV----IGTTDVTGTTVHFTPDPEIFT 186
Query: 255 TAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDK 314
QFD++ +A RI+ELAFLN L I++ + S E+ ++ + + GG+ YV++LN K
Sbjct: 187 ETTQFDYSVLAKRIQELAFLNRGLKISITDKRSGMEQEEH--FHYEGGIGSYVEFLNDKK 244
Query: 315 KPLHDVVGFRK-DVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRT 373
+ + + +++GI +++A+Q+ + +Y +T++ +AN+I T +GGTH +G +A+LTR
Sbjct: 245 DVIFETPIYTDGELEGIAVEVAMQYTT-SYQETVMSFANNIHTHEGGTHEQGFRAALTRV 303
Query: 374 LNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQS 433
+N KK+K +K+ + +L+GE VREGLT +ISV+ PNP+FEGQTKT+LGN EV K+ ++
Sbjct: 304 INDYAKKNKILKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNRL 363
Query: 434 VQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSS 493
E +L +P V I+ K + A KA +AAKRAR++ R+KS L S+LPGKLADCSS
Sbjct: 364 FSEAFQRFLLENPQVARKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADCSS 423
Query: 494 TTPEESEIFIVEGDSAGGSAKQGRDRRFQVIINPLQESIFAFASA 538
++E+FIVEGDSAGGSAK GR+R FQ I+ P++ I A
Sbjct: 424 NDANQNELFIVEGDSAGGSAKSGRNREFQAIL-PIRGKILNVEKA 467
>sp|Q8CQK4|GYRB_STAES DNA gyrase subunit B OS=Staphylococcus epidermidis (strain ATCC
12228) GN=gyrB PE=3 SV=1
Length = 643
Score = 439 bits (1128), Expect = e-122, Method: Compositional matrix adjust.
Identities = 246/466 (52%), Positives = 318/466 (68%), Gaps = 11/466 (2%)
Query: 74 SKTYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVA 133
+ YG+ QIQVLEGLEAVRKRP MYIGST RGLHHLV+EI+DN++DEA AGYAS+IEV
Sbjct: 11 TDNYGAGQIQVLEGLEAVRKRPGMYIGSTSERGLHHLVWEIVDNSIDEALAGYASHIEVV 70
Query: 134 LLADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGL 193
+ DN + V DNGRGIP+D+ + A+E +LTVLHAGGKFGG VSGGLHGVG
Sbjct: 71 IEKDNWIKVTDNGRGIPVDIQEKMGRPAVEVILTVLHAGGKFGGGGY--KVSGGLHGVGS 128
Query: 194 SVVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVF 253
SVVNALS+ LEV V R+G YHQ Y +G P L + D+ GT IRF DK++F
Sbjct: 129 SVVNALSQDLEVYVHRNGTIYHQAYKQGVPQFDLK----EIGDTDKTGTAIRFKADKEIF 184
Query: 254 TTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTD 313
T +++ T+ RIRELAFLN + I L+ E + + Y + GG++ YV LN +
Sbjct: 185 TETTVYNYETLQKRIRELAFLNKGIQITLKDEREEEVRED--SYHYEGGIKSYVDLLNEN 242
Query: 314 KKPLHDV-VGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTR 372
K+PLHD + + D I +++ALQ+ S Y+ +L YAN+I T +GGTH +G K +LTR
Sbjct: 243 KEPLHDEPIYIHQSKDDIEVEIALQYNS-GYATNLLTYANNIHTYEGGTHEDGFKRALTR 301
Query: 373 TLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQ 432
LNS G +SK +K+ LSGE REGLT ++S++ +P+FEGQTKT+LGN EVR+VVD+
Sbjct: 302 VLNSYGTQSKIIKEDKDRLSGEDTREGLTAVVSIKHGDPQFEGQTKTKLGNSEVRQVVDR 361
Query: 433 SVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCS 492
E+ +L +P V I+ K + A +A +AAK+AR++ R+KS L SSLPGKLADCS
Sbjct: 362 LFSEHFERFLYENPSVGRIIVEKGIMASRARVAAKKAREVTRRKSALDVSSLPGKLADCS 421
Query: 493 STTPEESEIFIVEGDSAGGSAKQGRDRRFQVIINPLQESIFAFASA 538
S PEESEIF+VEGDSAGGS K GRD R Q I+ PL+ I A
Sbjct: 422 SKNPEESEIFLVEGDSAGGSTKSGRDSRTQAIL-PLRGKILNVEKA 466
>sp|Q5HK03|GYRB_STAEQ DNA gyrase subunit B OS=Staphylococcus epidermidis (strain ATCC
35984 / RP62A) GN=gyrB PE=3 SV=1
Length = 643
Score = 439 bits (1128), Expect = e-122, Method: Compositional matrix adjust.
Identities = 246/466 (52%), Positives = 318/466 (68%), Gaps = 11/466 (2%)
Query: 74 SKTYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVA 133
+ YG+ QIQVLEGLEAVRKRP MYIGST RGLHHLV+EI+DN++DEA AGYAS+IEV
Sbjct: 11 TDNYGAGQIQVLEGLEAVRKRPGMYIGSTSERGLHHLVWEIVDNSIDEALAGYASHIEVV 70
Query: 134 LLADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGL 193
+ DN + V DNGRGIP+D+ + A+E +LTVLHAGGKFGG VSGGLHGVG
Sbjct: 71 IEKDNWIKVTDNGRGIPVDIQEKMGRPAVEVILTVLHAGGKFGGGGY--KVSGGLHGVGS 128
Query: 194 SVVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVF 253
SVVNALS+ LEV V R+G YHQ Y +G P L + D+ GT IRF DK++F
Sbjct: 129 SVVNALSQDLEVYVHRNGTIYHQAYKQGVPQFDLK----EIGDTDKTGTAIRFKADKEIF 184
Query: 254 TTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTD 313
T +++ T+ RIRELAFLN + I L+ E + + Y + GG++ YV LN +
Sbjct: 185 TETTVYNYETLQKRIRELAFLNKGIQITLKDEREEEVRED--SYHYEGGIKSYVDLLNEN 242
Query: 314 KKPLHDV-VGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTR 372
K+PLHD + + D I +++ALQ+ S Y+ +L YAN+I T +GGTH +G K +LTR
Sbjct: 243 KEPLHDEPIYIHQSKDDIEVEIALQYNS-GYATNLLTYANNIHTYEGGTHEDGFKRALTR 301
Query: 373 TLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQ 432
LNS G +SK +K+ LSGE REGLT ++S++ +P+FEGQTKT+LGN EVR+VVD+
Sbjct: 302 VLNSYGTQSKIIKEDKDRLSGEDTREGLTAVVSIKHGDPQFEGQTKTKLGNSEVRQVVDR 361
Query: 433 SVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCS 492
E+ +L +P V I+ K + A +A +AAK+AR++ R+KS L SSLPGKLADCS
Sbjct: 362 LFSEHFERFLYENPSVGRIIVEKGIMASRARVAAKKAREVTRRKSALDVSSLPGKLADCS 421
Query: 493 STTPEESEIFIVEGDSAGGSAKQGRDRRFQVIINPLQESIFAFASA 538
S PEESEIF+VEGDSAGGS K GRD R Q I+ PL+ I A
Sbjct: 422 SKNPEESEIFLVEGDSAGGSTKSGRDSRTQAIL-PLRGKILNVEKA 466
>sp|Q9Z8R3|GYRB_CHLPN DNA gyrase subunit B OS=Chlamydia pneumoniae GN=gyrB PE=3 SV=1
Length = 805
Score = 437 bits (1125), Expect = e-122, Method: Compositional matrix adjust.
Identities = 238/479 (49%), Positives = 312/479 (65%), Gaps = 22/479 (4%)
Query: 71 NPVSKTYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNI 130
+P K Y + I VLEGL+AVR+RP MYIG TG GLHHLVYE++DN++DEA AGY S I
Sbjct: 2 DPKEKNYDASAITVLEGLQAVRERPGMYIGDTGITGLHHLVYEVVDNSIDEAMAGYCSRI 61
Query: 131 EVALLADNSVSVADNGRGIPIDLHPATNK------SALETVLTVLHAGGKFGGSSSGYSV 184
+V +L D + + DNGRGIPI++H + SALE VLTVLHAGGKF S Y V
Sbjct: 62 DVRILEDGGIVIVDNGRGIPIEVHERESAKQGREVSALEVVLTVLHAGGKFDKDS--YKV 119
Query: 185 SGGLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRI 244
SGGLHGVG+S VNALSE L TV++D Y ++SRG PVT L V DRQGT I
Sbjct: 120 SGGLHGVGVSCVNALSEKLVATVFKDKKCYQMEFSRGIPVTPLQY----VSVSDRQGTEI 175
Query: 245 RFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLE 304
F+PD ++F+T FD + + R+RELAFLN +TI ++D D ++ +F+ GG++
Sbjct: 176 VFYPDPKIFSTC-TFDRSILMKRLRELAFLNRGITIVF-EDDRDVSFDKVT-FFYEGGIQ 232
Query: 305 EYVQWLNTDKKPLHD----VVGFRKDVDG-ITIDLALQWCSDAYSDTMLGYANSIRTIDG 359
+V +LN +K+ L + G R DG I + ALQW S YS+ + YAN+I T G
Sbjct: 233 SFVSYLNQNKESLFSEPIYICGTRVGDDGEIEFEAALQWNS-GYSELVYSYANNIPTRQG 291
Query: 360 GTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKT 419
GTH+ G +LTR +N+ K K+ ++L+GE +REGLT +ISV+VPNP+FEGQTK
Sbjct: 292 GTHLTGFSTALTRVINTYIKAHNLAKNNKLALTGEDIREGLTAVISVKVPNPQFEGQTKQ 351
Query: 420 RLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVL 479
+LGN +V V Q V E LT + E +P + I+ K A +A AAK+AR+L +KS L
Sbjct: 352 KLGNSDVSSVAQQVVGEALTIFFEENPQIARMIVDKVFVAAQAREAAKKARELTLRKSAL 411
Query: 480 RSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQVIINPLQESIFAFASA 538
S+ LPGKL DC PE+ E++IVEGDSAGGSAKQGRDRRFQ I+ P++ I A
Sbjct: 412 DSARLPGKLIDCLEKDPEKCEMYIVEGDSAGGSAKQGRDRRFQAIL-PIRGKILNVEKA 469
>sp|O67137|GYRB_AQUAE DNA gyrase subunit B OS=Aquifex aeolicus (strain VF5) GN=gyrB PE=3
SV=1
Length = 792
Score = 436 bits (1121), Expect = e-121, Method: Compositional matrix adjust.
Identities = 228/472 (48%), Positives = 318/472 (67%), Gaps = 16/472 (3%)
Query: 69 KENPVSKTYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYAS 128
+++ + Y +E I+ + GLE VR RPAMYIG G RGLHHL++EILDNAVDEA AGYA
Sbjct: 4 RQSQTPQEYTAEAIKAVSGLEHVRLRPAMYIGDIGERGLHHLIWEILDNAVDEAVAGYAR 63
Query: 129 NIEVALLADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGL 188
NI V + DNSV+V D+GRGIP+D+HP T K A+E V T+L AGGKF Y+ SGGL
Sbjct: 64 NISVTIHRDNSVTVEDDGRGIPVDIHPETGKPAVEMVFTMLGAGGKF--EKKVYTYSGGL 121
Query: 189 HGVGLSVVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWP 248
HGVG SVVNALSE L V V+RDG Y + RG+ V L HV V ++GT++ F P
Sbjct: 122 HGVGASVVNALSEWLIVEVYRDGKIYRMAFKRGEVVEPL--HV--VGETKKRGTKVSFKP 177
Query: 249 DKQVF-TTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYV 307
D ++F TT I+FD + R+RELA+LNP++ L +D ++ Y F G+EE V
Sbjct: 178 DPEIFETTEIKFD--IVEKRVRELAYLNPEVKFEL----TDERLGKHLIYKFDRGIEELV 231
Query: 308 QWLNTDKKPL-HDVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGV 366
++LN K+PL D++ + + +G+ +D+A Q+ D Y + + + N+I+T++GGTH+ G
Sbjct: 232 KYLNEGKEPLFKDIIRIQGEKEGVIVDIAFQYVKD-YKERIESFVNNIKTVEGGTHVTGF 290
Query: 367 KASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEV 426
++ L++ + + + K K+ S +GE VREGLT +++ +VPNP+FEGQTKT+LGN V
Sbjct: 291 RSGLSKAVIRMAQGLKLAKELKKSFTGEDVREGLTAVVACKVPNPQFEGQTKTKLGNQNV 350
Query: 427 RKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPG 486
+++V+ ++LT Y E DVL +I+ K++ A A AAK+A++LVR+KS L LPG
Sbjct: 351 KQIVESITYDFLTSYFEKKRDVLKAIVEKAIEAALAREAAKKAKELVRRKSPLEEGVLPG 410
Query: 487 KLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQVIINPLQESIFAFASA 538
KLADCS T P + EIF+VEGDSAGGSAKQ RDRR+Q I+ PL+ I A
Sbjct: 411 KLADCSETDPSKCEIFLVEGDSAGGSAKQARDRRYQAIL-PLRGKIINVEKA 461
>sp|O87667|GYRB_CAMJE DNA gyrase subunit B OS=Campylobacter jejuni subsp. jejuni serotype
O:2 (strain NCTC 11168) GN=gyrB PE=3 SV=2
Length = 769
Score = 432 bits (1111), Expect = e-120, Method: Compositional matrix adjust.
Identities = 219/466 (46%), Positives = 310/466 (66%), Gaps = 14/466 (3%)
Query: 73 VSKTYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEV 132
+ + YG+ I+VL+GLEAVRKRP MYIG T GLHH++YE++DN++DEA AG+ I+V
Sbjct: 1 MQENYGASNIKVLKGLEAVRKRPGMYIGDTNIGGLHHMIYEVVDNSIDEAMAGHCDTIDV 60
Query: 133 ALLADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVG 192
+ + S V+DNGRGIP+D+HP N L VLTVLHAGGKF + Y VSGGLHGVG
Sbjct: 61 EITTEGSCIVSDNGRGIPVDMHPTENMPTLTVVLTVLHAGGKFDKDT--YKVSGGLHGVG 118
Query: 193 LSVVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQV 252
+SVVNALS+ L TV R+G Y Q++S GK ++ + + GT I FWPD Q+
Sbjct: 119 VSVVNALSKKLVATVERNGEIYRQEFSEGKVISEFGV----IGKSKKTGTTIEFWPDDQI 174
Query: 253 FTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNT 312
F +FD+ +A R RELA+LNPK+TI + D ++ + F GG+ ++V LN
Sbjct: 175 FEVT-EFDYEILAKRFRELAYLNPKITINFK----DNRVGKHESFHFEGGISQFVTDLNK 229
Query: 313 DKKPLHDVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTR 372
K+ L + F D + + +++AL + +D YS+ +L + N+I+T DGGTH G + LTR
Sbjct: 230 -KEALTKAIFFSVDEEDVNVEVALLY-NDTYSENLLSFVNNIKTPDGGTHEAGFRMGLTR 287
Query: 373 TLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQ 432
+++ + + + ++KD ++G+ VREGL I+SV+VP P+FEGQTK +LG+ VR +V +
Sbjct: 288 VISNYIEANASAREKDNKITGDDVREGLIAIVSVKVPEPQFEGQTKGKLGSTYVRPIVSK 347
Query: 433 SVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCS 492
+ EYLT+Y E +P +I++K+L A + AAK+AR+L R+K L +LPGKLADC
Sbjct: 348 ASFEYLTKYFEENPIEAKAIMNKALMAARGREAAKKARELTRKKESLSVGTLPGKLADCQ 407
Query: 493 STTPEESEIFIVEGDSAGGSAKQGRDRRFQVIINPLQESIFAFASA 538
S P ESEI++VEGDSAGGSAKQGR+R FQ I+ PL+ I A
Sbjct: 408 SKDPSESEIYLVEGDSAGGSAKQGRERSFQAIL-PLRGKILNVEKA 452
>sp|Q9L7L3|GYRB_MYCPA DNA gyrase subunit B OS=Mycobacterium paratuberculosis (strain ATCC
BAA-968 / K-10) GN=gyrB PE=3 SV=1
Length = 677
Score = 429 bits (1102), Expect = e-119, Method: Compositional matrix adjust.
Identities = 234/501 (46%), Positives = 321/501 (64%), Gaps = 38/501 (7%)
Query: 67 AFKENPVSKTYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGY 126
A ++ YG+ I VLEGLEAVRKRP MYIGSTG RGLHHL++E++DN+VDEA AGY
Sbjct: 2 AAQKKKAQDEYGASAITVLEGLEAVRKRPGMYIGSTGERGLHHLIWEVVDNSVDEAMAGY 61
Query: 127 ASNIEVALLADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSG 186
A ++V +L D SV VADNGRGIP+ +H AT ++ V+T LHAGGKFGG +SGY+VSG
Sbjct: 62 ADRVDVRILDDGSVEVADNGRGIPVAMH-ATGAPTVDVVMTQLHAGGKFGGENSGYNVSG 120
Query: 187 GLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRF 246
GLHGVG+SVVNALS LEV + RDG E+ Q Y P T ++ R GT IRF
Sbjct: 121 GLHGVGVSVVNALSTRLEVNIARDGYEWSQYYDHAVPGTLKQG-----EATKRTGTTIRF 175
Query: 247 WPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRK---------------------- 284
W D +F T ++D T+A R++E+AFLN LTI L
Sbjct: 176 WADPDIFETT-EYDFETVARRLQEMAFLNKGLTINLTDERVTNEEVVDEVVSDTADAPKS 234
Query: 285 ------EDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITIDLALQ 337
E + P K ++ + + GGL ++V+ +N K P+H ++ F G +++A+Q
Sbjct: 235 AQEKAAESAAPHKVKHRTFHYPGGLVDFVKHINRTKNPIHQSIIDFGGKGPGHEVEIAMQ 294
Query: 338 WCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVR 397
W + YS+++ +AN+I T +GGTH EG +++LT +N K K +KDKD +L+G+ +R
Sbjct: 295 W-NGGYSESVHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDKKLLKDKDPNLTGDDIR 353
Query: 398 EGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSL 457
EGL +ISV+V P+FEGQTKT+LGN EV+ V + E LT + E +P I++K++
Sbjct: 354 EGLAAVISVKVSEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPADAKVIVNKAV 413
Query: 458 SALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGR 517
S+ +A +AA++AR+LVR+KS LPGKLADC ST P +SE+++VEGDSAGGSAK GR
Sbjct: 414 SSAQARIAARKARELVRRKSATDLGGLPGKLADCRSTDPRKSELYVVEGDSAGGSAKSGR 473
Query: 518 DRRFQVIINPLQESIFAFASA 538
D FQ I+ PL+ I A
Sbjct: 474 DSMFQAIL-PLRGKIINVEKA 493
>sp|Q9PKK3|GYRB_CHLMU DNA gyrase subunit B OS=Chlamydia muridarum (strain MoPn / Nigg)
GN=gyrB PE=3 SV=1
Length = 804
Score = 427 bits (1098), Expect = e-118, Method: Compositional matrix adjust.
Identities = 231/475 (48%), Positives = 308/475 (64%), Gaps = 22/475 (4%)
Query: 75 KTYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVAL 134
K Y + I VLEGL+AVR+RP MYIG TG GLHHLVYE++DN++DEA AG+ + + V +
Sbjct: 6 KKYDASAITVLEGLQAVRERPGMYIGDTGVTGLHHLVYEVVDNSIDEAMAGFCTEVVVRI 65
Query: 135 LADNSVSVADNGRGIPIDLHPATNK------SALETVLTVLHAGGKFGGSSSGYSVSGGL 188
L D +SV+DNGRGIP+ +H + SALE VLTVLHAGGKF S Y VSGGL
Sbjct: 66 LEDGGISVSDNGRGIPVQIHEKESAKQGREISALEVVLTVLHAGGKFDKDS--YKVSGGL 123
Query: 189 HGVGLSVVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWP 248
HGVG+S VNALSE V++DG Y ++S+G P+T L + S D++GT I F+P
Sbjct: 124 HGVGVSCVNALSEKFIANVFKDGQAYSMEFSKGAPLTALQV----LGSTDKRGTEILFYP 179
Query: 249 DKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQ 308
D VF+T + FD + R+RELAFLN +TI ++D D ++ +F+ GG++ +V
Sbjct: 180 DPTVFSTCV-FDRAILMKRLRELAFLNRGITIIF-EDDRDAGFDKVT-FFYEGGIQSFVS 236
Query: 309 WLNTDKKPLHD----VVGFRKDVDG-ITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHI 363
+LN +K+ L + G ++ DG I + ALQW S YS+ + YAN+I T GGTH+
Sbjct: 237 YLNQNKESLFPTPIYIQGSKRGDDGDIEFEAALQWNS-GYSELIYSYANNIPTRQGGTHL 295
Query: 364 EGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGN 423
G +LTR +NS K K +SL+GE +REGL I+SV+VPNP+FEGQTK +LGN
Sbjct: 296 TGFSTALTRAVNSYIKSHNLAKSDKLSLTGEDIREGLVAIVSVKVPNPQFEGQTKQKLGN 355
Query: 424 PEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSS 483
+V V Q E LT + E +P + +I+ K A +A AAKRAR+L +KS L S+
Sbjct: 356 SDVGSVAQQISGEVLTTFFEENPQIAKTIVDKVFVAAQAREAAKRARELTIRKSALDSAR 415
Query: 484 LPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQVIINPLQESIFAFASA 538
LPGKL DC PE+ E++IVEGDSAGGSAKQGRDRRFQ I+ P++ I A
Sbjct: 416 LPGKLVDCLEKDPEKCEMYIVEGDSAGGSAKQGRDRRFQAIL-PIRGKILNVEKA 469
>sp|O50627|GYRB_BACHD DNA gyrase subunit B OS=Bacillus halodurans (strain ATCC BAA-125 /
DSM 18197 / FERM 7344 / JCM 9153 / C-125) GN=gyrB PE=3
SV=1
Length = 637
Score = 425 bits (1092), Expect = e-118, Method: Compositional matrix adjust.
Identities = 229/465 (49%), Positives = 307/465 (66%), Gaps = 12/465 (2%)
Query: 75 KTYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVAL 134
+ Y QIQVLEGLEAVRKRP MYIGST RGLHHLV+EI+DN++DEA AG+ I V +
Sbjct: 6 QAYDESQIQVLEGLEAVRKRPGMYIGSTSSRGLHHLVWEIVDNSIDEAMAGFCDEIGVVI 65
Query: 135 LADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLS 194
DNS++V DNGRGIP+ +H + A+E ++TVLHAGGKFGG S LHGVG S
Sbjct: 66 EEDNSITVTDNGRGIPVGIHEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGG--LHGVGAS 123
Query: 195 VVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFT 254
VVNALS LEV V R+G ++QK+ RG P L + + DR GT+I F PD +FT
Sbjct: 124 VVNALSTMLEVEVHREGKVHYQKFHRGVPAADLEV----IGTTDRTGTKIHFKPDGDIFT 179
Query: 255 TAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDK 314
F+++T+A R+RELAFLN L I + E+ + +E+ + GG+ +V+ LN +
Sbjct: 180 ETTVFEYDTLASRLRELAFLNKGLRIKITDM---REEEKSDEFHYEGGIASFVEHLNRTR 236
Query: 315 KPLHDV-VGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRT 373
+ LH+ + + G+ +++A+Q+ +D ++ + +AN+I T +GGTH G K LTR
Sbjct: 237 ETLHETPIHIEGEKQGVYVEIAVQY-NDGFTSNIYSFANNINTHEGGTHESGFKTGLTRV 295
Query: 374 LNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQS 433
+N +K K+ D +L+GE VREGLT IISV++P+P+FEGQTKT+LGN E R + D
Sbjct: 296 INDYARKHNLFKESDPNLTGEDVREGLTAIISVKIPDPQFEGQTKTKLGNSEARTITDSL 355
Query: 434 VQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSS 493
E+ + +L HP V ++ K L A +A AAK+AR+L R+KS L SSLPGKLADCSS
Sbjct: 356 FTEHFSRFLIEHPQVARKLVDKGLMASRAREAAKKARELTRRKSALEVSSLPGKLADCSS 415
Query: 494 TTPEESEIFIVEGDSAGGSAKQGRDRRFQVIINPLQESIFAFASA 538
SEI+IVEGDSAGGSAKQGRDR FQ I+ PL+ I A
Sbjct: 416 RDASISEIYIVEGDSAGGSAKQGRDRHFQAIL-PLRGKILNVEKA 459
>sp|P0A0K7|GYRB_STAAW DNA gyrase subunit B OS=Staphylococcus aureus (strain MW2) GN=gyrB
PE=3 SV=2
Length = 644
Score = 423 bits (1088), Expect = e-117, Method: Compositional matrix adjust.
Identities = 243/466 (52%), Positives = 320/466 (68%), Gaps = 10/466 (2%)
Query: 74 SKTYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVA 133
+ YG+ QIQVLEGLEAVRKRP MYIGST RGLHHLV+EI+DN++DEA AGYA+ IEV
Sbjct: 11 TDNYGAGQIQVLEGLEAVRKRPGMYIGSTSERGLHHLVWEIVDNSIDEALAGYANQIEVV 70
Query: 134 LLADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGL 193
+ DN + V DNGRGIP+D+ + A+E +LTVLHAGGKFGG VSGGLHGVG
Sbjct: 71 IEKDNWIKVTDNGRGIPVDIQEKMGRPAVEVILTVLHAGGKFGGGGY--KVSGGLHGVGS 128
Query: 194 SVVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVF 253
SVVNALS+ LEV V R+ YHQ Y +G P L V + D+ GT IRF D ++F
Sbjct: 129 SVVNALSQDLEVYVHRNETIYHQAYKKGVPQFDLK----EVGTTDKTGTVIRFKADGEIF 184
Query: 254 TTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTD 313
T +++ T+ RIRELAFLN + I LR E D E + + Y + GG++ YV+ LN +
Sbjct: 185 TETTVYNYETLQQRIRELAFLNKGIQITLRDE-RDEENVREDSYHYEGGIKSYVELLNEN 243
Query: 314 KKPLHDV-VGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTR 372
K+P+HD + + D I +++A+Q+ S Y+ +L YAN+I T +GGTH +G K +LTR
Sbjct: 244 KEPIHDEPIYIHQSKDDIEVEIAIQYNS-GYATNLLTYANNIHTYEGGTHEDGFKRALTR 302
Query: 373 TLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQ 432
LNS G SK +K++ LSGE REG+T IIS++ +P+FEGQTKT+LGN EVR+VVD+
Sbjct: 303 VLNSYGLSSKIMKEEKDRLSGEDTREGMTAIISIKHGDPQFEGQTKTKLGNSEVRQVVDK 362
Query: 433 SVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCS 492
E+ +L +P V +++ K + A +A +AAK+AR++ R+KS L +SLPGKLADCS
Sbjct: 363 LFSEHFERFLYENPQVARTVVEKGIMAARARVAAKKAREVTRRKSALDVASLPGKLADCS 422
Query: 493 STTPEESEIFIVEGDSAGGSAKQGRDRRFQVIINPLQESIFAFASA 538
S +PEE EIF+VEGDSAGGS K GRD R Q I+ PL+ I A
Sbjct: 423 SKSPEECEIFLVEGDSAGGSTKSGRDSRTQAIL-PLRGKILNVEKA 467
>sp|P0A0K8|GYRB_STAAU DNA gyrase subunit B OS=Staphylococcus aureus GN=gyrB PE=1 SV=2
Length = 644
Score = 423 bits (1088), Expect = e-117, Method: Compositional matrix adjust.
Identities = 243/466 (52%), Positives = 320/466 (68%), Gaps = 10/466 (2%)
Query: 74 SKTYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVA 133
+ YG+ QIQVLEGLEAVRKRP MYIGST RGLHHLV+EI+DN++DEA AGYA+ IEV
Sbjct: 11 TDNYGAGQIQVLEGLEAVRKRPGMYIGSTSERGLHHLVWEIVDNSIDEALAGYANQIEVV 70
Query: 134 LLADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGL 193
+ DN + V DNGRGIP+D+ + A+E +LTVLHAGGKFGG VSGGLHGVG
Sbjct: 71 IEKDNWIKVTDNGRGIPVDIQEKMGRPAVEVILTVLHAGGKFGGGGY--KVSGGLHGVGS 128
Query: 194 SVVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVF 253
SVVNALS+ LEV V R+ YHQ Y +G P L V + D+ GT IRF D ++F
Sbjct: 129 SVVNALSQDLEVYVHRNETIYHQAYKKGVPQFDLK----EVGTTDKTGTVIRFKADGEIF 184
Query: 254 TTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTD 313
T +++ T+ RIRELAFLN + I LR E D E + + Y + GG++ YV+ LN +
Sbjct: 185 TETTVYNYETLQQRIRELAFLNKGIQITLRDE-RDEENVREDSYHYEGGIKSYVELLNEN 243
Query: 314 KKPLHDV-VGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTR 372
K+P+HD + + D I +++A+Q+ S Y+ +L YAN+I T +GGTH +G K +LTR
Sbjct: 244 KEPIHDEPIYIHQSKDDIEVEIAIQYNS-GYATNLLTYANNIHTYEGGTHEDGFKRALTR 302
Query: 373 TLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQ 432
LNS G SK +K++ LSGE REG+T IIS++ +P+FEGQTKT+LGN EVR+VVD+
Sbjct: 303 VLNSYGLSSKIMKEEKDRLSGEDTREGMTAIISIKHGDPQFEGQTKTKLGNSEVRQVVDK 362
Query: 433 SVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCS 492
E+ +L +P V +++ K + A +A +AAK+AR++ R+KS L +SLPGKLADCS
Sbjct: 363 LFSEHFERFLYENPQVARTVVEKGIMAARARVAAKKAREVTRRKSALDVASLPGKLADCS 422
Query: 493 STTPEESEIFIVEGDSAGGSAKQGRDRRFQVIINPLQESIFAFASA 538
S +PEE EIF+VEGDSAGGS K GRD R Q I+ PL+ I A
Sbjct: 423 SKSPEECEIFLVEGDSAGGSTKSGRDSRTQAIL-PLRGKILNVEKA 467
>sp|Q6GD85|GYRB_STAAS DNA gyrase subunit B OS=Staphylococcus aureus (strain MSSA476)
GN=gyrB PE=3 SV=3
Length = 644
Score = 423 bits (1088), Expect = e-117, Method: Compositional matrix adjust.
Identities = 243/466 (52%), Positives = 320/466 (68%), Gaps = 10/466 (2%)
Query: 74 SKTYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVA 133
+ YG+ QIQVLEGLEAVRKRP MYIGST RGLHHLV+EI+DN++DEA AGYA+ IEV
Sbjct: 11 TDNYGAGQIQVLEGLEAVRKRPGMYIGSTSERGLHHLVWEIVDNSIDEALAGYANQIEVV 70
Query: 134 LLADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGL 193
+ DN + V DNGRGIP+D+ + A+E +LTVLHAGGKFGG VSGGLHGVG
Sbjct: 71 IEKDNWIKVTDNGRGIPVDIQEKMGRPAVEVILTVLHAGGKFGGGGY--KVSGGLHGVGS 128
Query: 194 SVVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVF 253
SVVNALS+ LEV V R+ YHQ Y +G P L V + D+ GT IRF D ++F
Sbjct: 129 SVVNALSQDLEVYVHRNETIYHQAYKKGVPQFDLK----EVGTTDKTGTVIRFKADGEIF 184
Query: 254 TTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTD 313
T +++ T+ RIRELAFLN + I LR E D E + + Y + GG++ YV+ LN +
Sbjct: 185 TETTVYNYETLQQRIRELAFLNKGIQITLRDE-RDEENVREDSYHYEGGIKSYVELLNEN 243
Query: 314 KKPLHDV-VGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTR 372
K+P+HD + + D I +++A+Q+ S Y+ +L YAN+I T +GGTH +G K +LTR
Sbjct: 244 KEPIHDEPIYIHQSKDDIEVEIAIQYNS-GYATNLLTYANNIHTYEGGTHEDGFKRALTR 302
Query: 373 TLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQ 432
LNS G SK +K++ LSGE REG+T IIS++ +P+FEGQTKT+LGN EVR+VVD+
Sbjct: 303 VLNSYGLSSKIMKEEKDRLSGEDTREGMTAIISIKHGDPQFEGQTKTKLGNSEVRQVVDK 362
Query: 433 SVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCS 492
E+ +L +P V +++ K + A +A +AAK+AR++ R+KS L +SLPGKLADCS
Sbjct: 363 LFSEHFERFLYENPQVARTVVEKGIMAARARVAAKKAREVTRRKSALDVASLPGKLADCS 422
Query: 493 STTPEESEIFIVEGDSAGGSAKQGRDRRFQVIINPLQESIFAFASA 538
S +PEE EIF+VEGDSAGGS K GRD R Q I+ PL+ I A
Sbjct: 423 SKSPEECEIFLVEGDSAGGSTKSGRDSRTQAIL-PLRGKILNVEKA 467
>sp|Q2FKQ1|GYRB_STAA3 DNA gyrase subunit B OS=Staphylococcus aureus (strain USA300)
GN=gyrB PE=3 SV=3
Length = 644
Score = 423 bits (1088), Expect = e-117, Method: Compositional matrix adjust.
Identities = 243/466 (52%), Positives = 320/466 (68%), Gaps = 10/466 (2%)
Query: 74 SKTYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVA 133
+ YG+ QIQVLEGLEAVRKRP MYIGST RGLHHLV+EI+DN++DEA AGYA+ IEV
Sbjct: 11 TDNYGAGQIQVLEGLEAVRKRPGMYIGSTSERGLHHLVWEIVDNSIDEALAGYANQIEVV 70
Query: 134 LLADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGL 193
+ DN + V DNGRGIP+D+ + A+E +LTVLHAGGKFGG VSGGLHGVG
Sbjct: 71 IEKDNWIKVTDNGRGIPVDIQEKMGRPAVEVILTVLHAGGKFGGGGY--KVSGGLHGVGS 128
Query: 194 SVVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVF 253
SVVNALS+ LEV V R+ YHQ Y +G P L V + D+ GT IRF D ++F
Sbjct: 129 SVVNALSQDLEVYVHRNETIYHQAYKKGVPQFDLK----EVGTTDKTGTVIRFKADGEIF 184
Query: 254 TTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTD 313
T +++ T+ RIRELAFLN + I LR E D E + + Y + GG++ YV+ LN +
Sbjct: 185 TETTVYNYETLQQRIRELAFLNKGIQITLRDE-RDEENVREDSYHYEGGIKSYVELLNEN 243
Query: 314 KKPLHDV-VGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTR 372
K+P+HD + + D I +++A+Q+ S Y+ +L YAN+I T +GGTH +G K +LTR
Sbjct: 244 KEPIHDEPIYIHQSKDDIEVEIAIQYNS-GYATNLLTYANNIHTYEGGTHEDGFKRALTR 302
Query: 373 TLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQ 432
LNS G SK +K++ LSGE REG+T IIS++ +P+FEGQTKT+LGN EVR+VVD+
Sbjct: 303 VLNSYGLSSKIMKEEKDRLSGEDTREGMTAIISIKHGDPQFEGQTKTKLGNSEVRQVVDK 362
Query: 433 SVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCS 492
E+ +L +P V +++ K + A +A +AAK+AR++ R+KS L +SLPGKLADCS
Sbjct: 363 LFSEHFERFLYENPQVARTVVEKGIMAARARVAAKKAREVTRRKSALDVASLPGKLADCS 422
Query: 493 STTPEESEIFIVEGDSAGGSAKQGRDRRFQVIINPLQESIFAFASA 538
S +PEE EIF+VEGDSAGGS K GRD R Q I+ PL+ I A
Sbjct: 423 SKSPEECEIFLVEGDSAGGSTKSGRDSRTQAIL-PLRGKILNVEKA 467
>sp|P66937|GYRB_STAAN DNA gyrase subunit B OS=Staphylococcus aureus (strain N315) GN=gyrB
PE=1 SV=2
Length = 644
Score = 423 bits (1088), Expect = e-117, Method: Compositional matrix adjust.
Identities = 243/466 (52%), Positives = 320/466 (68%), Gaps = 10/466 (2%)
Query: 74 SKTYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVA 133
+ YG+ QIQVLEGLEAVRKRP MYIGST RGLHHLV+EI+DN++DEA AGYA+ IEV
Sbjct: 11 TDNYGAGQIQVLEGLEAVRKRPGMYIGSTSERGLHHLVWEIVDNSIDEALAGYANKIEVV 70
Query: 134 LLADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGL 193
+ DN + V DNGRGIP+D+ + A+E +LTVLHAGGKFGG VSGGLHGVG
Sbjct: 71 IEKDNWIKVTDNGRGIPVDIQEKMGRPAVEVILTVLHAGGKFGGGGY--KVSGGLHGVGS 128
Query: 194 SVVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVF 253
SVVNALS+ LEV V R+ YHQ Y +G P L V + D+ GT IRF D ++F
Sbjct: 129 SVVNALSQDLEVYVHRNETIYHQAYKKGVPQFDLK----EVGTTDKTGTVIRFKADGEIF 184
Query: 254 TTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTD 313
T +++ T+ RIRELAFLN + I LR E D E + + Y + GG++ YV+ LN +
Sbjct: 185 TETTVYNYETLQQRIRELAFLNKGIQITLRDE-RDEENVREDSYHYEGGIKSYVELLNEN 243
Query: 314 KKPLHDV-VGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTR 372
K+P+HD + + D I +++A+Q+ S Y+ +L YAN+I T +GGTH +G K +LTR
Sbjct: 244 KEPIHDEPIYIHQSKDDIEVEIAIQYNS-GYATNLLTYANNIHTYEGGTHEDGFKRALTR 302
Query: 373 TLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQ 432
LNS G SK +K++ LSGE REG+T IIS++ +P+FEGQTKT+LGN EVR+VVD+
Sbjct: 303 VLNSYGLSSKIMKEEKDRLSGEDTREGMTAIISIKHGDPQFEGQTKTKLGNSEVRQVVDK 362
Query: 433 SVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCS 492
E+ +L +P V +++ K + A +A +AAK+AR++ R+KS L +SLPGKLADCS
Sbjct: 363 LFSEHFERFLYENPQVARTVVEKGIMAARARVAAKKAREVTRRKSALDVASLPGKLADCS 422
Query: 493 STTPEESEIFIVEGDSAGGSAKQGRDRRFQVIINPLQESIFAFASA 538
S +PEE EIF+VEGDSAGGS K GRD R Q I+ PL+ I A
Sbjct: 423 SKSPEECEIFLVEGDSAGGSTKSGRDSRTQAIL-PLRGKILNVEKA 467
>sp|P66936|GYRB_STAAM DNA gyrase subunit B OS=Staphylococcus aureus (strain Mu50 / ATCC
700699) GN=gyrB PE=1 SV=2
Length = 644
Score = 423 bits (1088), Expect = e-117, Method: Compositional matrix adjust.
Identities = 243/466 (52%), Positives = 320/466 (68%), Gaps = 10/466 (2%)
Query: 74 SKTYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVA 133
+ YG+ QIQVLEGLEAVRKRP MYIGST RGLHHLV+EI+DN++DEA AGYA+ IEV
Sbjct: 11 TDNYGAGQIQVLEGLEAVRKRPGMYIGSTSERGLHHLVWEIVDNSIDEALAGYANKIEVV 70
Query: 134 LLADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGL 193
+ DN + V DNGRGIP+D+ + A+E +LTVLHAGGKFGG VSGGLHGVG
Sbjct: 71 IEKDNWIKVTDNGRGIPVDIQEKMGRPAVEVILTVLHAGGKFGGGGY--KVSGGLHGVGS 128
Query: 194 SVVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVF 253
SVVNALS+ LEV V R+ YHQ Y +G P L V + D+ GT IRF D ++F
Sbjct: 129 SVVNALSQDLEVYVHRNETIYHQAYKKGVPQFDLK----EVGTTDKTGTVIRFKADGEIF 184
Query: 254 TTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTD 313
T +++ T+ RIRELAFLN + I LR E D E + + Y + GG++ YV+ LN +
Sbjct: 185 TETTVYNYETLQQRIRELAFLNKGIQITLRDE-RDEENVREDSYHYEGGIKSYVELLNEN 243
Query: 314 KKPLHDV-VGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTR 372
K+P+HD + + D I +++A+Q+ S Y+ +L YAN+I T +GGTH +G K +LTR
Sbjct: 244 KEPIHDEPIYIHQSKDDIEVEIAIQYNS-GYATNLLTYANNIHTYEGGTHEDGFKRALTR 302
Query: 373 TLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQ 432
LNS G SK +K++ LSGE REG+T IIS++ +P+FEGQTKT+LGN EVR+VVD+
Sbjct: 303 VLNSYGLSSKIMKEEKDRLSGEDTREGMTAIISIKHGDPQFEGQTKTKLGNSEVRQVVDK 362
Query: 433 SVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCS 492
E+ +L +P V +++ K + A +A +AAK+AR++ R+KS L +SLPGKLADCS
Sbjct: 363 LFSEHFERFLYENPQVARTVVEKGIMAARARVAAKKAREVTRRKSALDVASLPGKLADCS 422
Query: 493 STTPEESEIFIVEGDSAGGSAKQGRDRRFQVIINPLQESIFAFASA 538
S +PEE EIF+VEGDSAGGS K GRD R Q I+ PL+ I A
Sbjct: 423 SKSPEECEIFLVEGDSAGGSTKSGRDSRTQAIL-PLRGKILNVEKA 467
>sp|Q6GKU0|GYRB_STAAR DNA gyrase subunit B OS=Staphylococcus aureus (strain MRSA252)
GN=gyrB PE=3 SV=3
Length = 644
Score = 423 bits (1087), Expect = e-117, Method: Compositional matrix adjust.
Identities = 243/466 (52%), Positives = 319/466 (68%), Gaps = 10/466 (2%)
Query: 74 SKTYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVA 133
+ YG+ QIQVLEGLEAVRKRP MYIGST RGLHHLV+EI+DN++DEA AGYA+ IEV
Sbjct: 11 TDNYGAGQIQVLEGLEAVRKRPGMYIGSTSERGLHHLVWEIVDNSIDEALAGYANQIEVV 70
Query: 134 LLADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGL 193
+ DN + V DNGRGIP+D+ + A+E +LTVLHAGGKFGG VSGGLHGVG
Sbjct: 71 IEKDNWIKVTDNGRGIPVDIQEKMGRPAVEVILTVLHAGGKFGGGGY--KVSGGLHGVGS 128
Query: 194 SVVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVF 253
SVVNALS+ LEV V R+ YHQ Y +G P L V + D+ GT IRF D ++F
Sbjct: 129 SVVNALSQDLEVYVHRNETIYHQAYKKGVPQFDLK----EVGTTDKTGTVIRFKADGEIF 184
Query: 254 TTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTD 313
T +++ T+ RIRELAFLN + I LR E D E + + Y + GG++ YV+ LN +
Sbjct: 185 TETTVYNYETLQQRIRELAFLNKGIQITLRDE-RDEENVREDSYHYEGGIKSYVELLNEN 243
Query: 314 KKPLHDV-VGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTR 372
K+P+HD + + D I +++A+Q+ S Y+ +L YAN+I T +GGTH +G K +LTR
Sbjct: 244 KEPIHDEPIYIHQSKDDIEVEIAIQYNS-GYATNLLTYANNIHTYEGGTHEDGFKRALTR 302
Query: 373 TLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQ 432
LNS G SK +K+ LSGE REG+T IIS++ +P+FEGQTKT+LGN EVR+VVD+
Sbjct: 303 VLNSYGLSSKIMKEDKDRLSGEDTREGMTAIISIKHGDPQFEGQTKTKLGNSEVRQVVDK 362
Query: 433 SVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCS 492
E+ +L +P V +++ K + A +A +AAK+AR++ R+KS L +SLPGKLADCS
Sbjct: 363 LFSEHFERFLYENPQVARTVVEKGIMAARARVAAKKAREVTRRKSALDVASLPGKLADCS 422
Query: 493 STTPEESEIFIVEGDSAGGSAKQGRDRRFQVIINPLQESIFAFASA 538
S +PEE EIF+VEGDSAGGS K GRD R Q I+ PL+ I A
Sbjct: 423 SKSPEECEIFLVEGDSAGGSTKSGRDSRTQAIL-PLRGKILNVEKA 467
>sp|Q5HJZ1|GYRB_STAAC DNA gyrase subunit B OS=Staphylococcus aureus (strain COL) GN=gyrB
PE=3 SV=3
Length = 644
Score = 422 bits (1084), Expect = e-117, Method: Compositional matrix adjust.
Identities = 242/466 (51%), Positives = 319/466 (68%), Gaps = 10/466 (2%)
Query: 74 SKTYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVA 133
+ YG+ QIQVLEGLEA RKRP MYIGST RGLHHLV+EI+DN++DEA AGYA+ IEV
Sbjct: 11 TDNYGAGQIQVLEGLEAARKRPGMYIGSTSERGLHHLVWEIVDNSIDEALAGYANQIEVV 70
Query: 134 LLADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGL 193
+ DN + V DNGRGIP+D+ + A+E +LTVLHAGGKFGG VSGGLHGVG
Sbjct: 71 IEKDNWIKVTDNGRGIPVDIQEKMGRPAVEVILTVLHAGGKFGGGGY--KVSGGLHGVGS 128
Query: 194 SVVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVF 253
SVVNALS+ LEV V R+ YHQ Y +G P L V + D+ GT IRF D ++F
Sbjct: 129 SVVNALSQDLEVYVHRNETIYHQAYKKGVPQFDLK----EVGTTDKTGTVIRFKADGEIF 184
Query: 254 TTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTD 313
T +++ T+ RIRELAFLN + I LR E D E + + Y + GG++ YV+ LN +
Sbjct: 185 TETTVYNYETLQQRIRELAFLNKGIQITLRDE-RDEENVREDSYHYEGGIKSYVELLNEN 243
Query: 314 KKPLHDV-VGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTR 372
K+P+HD + + D I +++A+Q+ S Y+ +L YAN+I T +GGTH +G K +LTR
Sbjct: 244 KEPIHDEPIYIHQSKDDIEVEIAIQYNS-GYATNLLTYANNIHTYEGGTHEDGFKRALTR 302
Query: 373 TLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQ 432
LNS G SK +K++ LSGE REG+T IIS++ +P+FEGQTKT+LGN EVR+VVD+
Sbjct: 303 VLNSYGLSSKIMKEEKDRLSGEDTREGMTAIISIKHGDPQFEGQTKTKLGNSEVRQVVDK 362
Query: 433 SVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCS 492
E+ +L +P V +++ K + A +A +AAK+AR++ R+KS L +SLPGKLADCS
Sbjct: 363 LFSEHFERFLYENPQVARTVVEKGIMAARARVAAKKAREVTRRKSALDVASLPGKLADCS 422
Query: 493 STTPEESEIFIVEGDSAGGSAKQGRDRRFQVIINPLQESIFAFASA 538
S +PEE EIF+VEGDSAGGS K GRD R Q I+ PL+ I A
Sbjct: 423 SKSPEECEIFLVEGDSAGGSTKSGRDSRTQAIL-PLRGKILNVEKA 467
>sp|O84193|GYRB_CHLTR DNA gyrase subunit B OS=Chlamydia trachomatis (strain D/UW-3/Cx)
GN=gyrB PE=3 SV=1
Length = 804
Score = 421 bits (1083), Expect = e-117, Method: Compositional matrix adjust.
Identities = 230/476 (48%), Positives = 309/476 (64%), Gaps = 24/476 (5%)
Query: 75 KTYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVAL 134
K Y + I VLEGL+AVR+RP MYIG TG GLHHLVYE++DN++DEA AG+ + + V +
Sbjct: 6 KKYDASAITVLEGLQAVRERPGMYIGDTGVTGLHHLVYEVVDNSIDEAMAGFCTEVVVRI 65
Query: 135 LADNSVSVADNGRGIPIDLHPATNK------SALETVLTVLHAGGKFGGSSSGYSVSGGL 188
L D +S++DNGRGIPI +H + SALE VLTVLHAGGKF S Y VSGGL
Sbjct: 66 LEDGGISISDNGRGIPIQIHEKESAKQGREISALEVVLTVLHAGGKFDKDS--YKVSGGL 123
Query: 189 HGVGLSVVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWP 248
HGVG+S VNALSE V++DG Y ++SRG P+TTL + D++GT + F+P
Sbjct: 124 HGVGVSCVNALSEKFIAKVFKDGQAYSMEFSRGAPLTTLQV----LGPTDKRGTEVLFYP 179
Query: 249 DKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQ 308
D +F+T + FD + R+RELAFLN +TI ++D D ++ +F+ GG++ +V
Sbjct: 180 DPAIFSTCV-FDRAILMKRLRELAFLNRGVTIVF-EDDRDTGFDKVV-FFYEGGIQSFVS 236
Query: 309 WLNTDKK-----PLHDVVGFRKDVDG-ITIDLALQWCSDAYSDTMLGYANSIRTIDGGTH 362
+LN +K+ P++ + G R DG I + ALQW S YS+ + YAN+I T GGTH
Sbjct: 237 YLNQNKEILFPNPIY-MQGSRPGDDGDIEFEAALQWNS-GYSELIYSYANNIPTRQGGTH 294
Query: 363 IEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLG 422
+ G +LTR +NS K K +SL+GE ++EGL I+SV+VPNP+FEGQTK +LG
Sbjct: 295 LTGFSTALTRAVNSYIKAHNLSKSDKLSLTGEDIKEGLVAIVSVKVPNPQFEGQTKQKLG 354
Query: 423 NPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSS 482
N +V V Q E LT + E +P + +I+ K A +A AAKRAR+L +KS L S+
Sbjct: 355 NSDVGSVSQQISGEVLTTFFEENPQIAKTIVDKVFVAAQAREAAKRARELTLRKSALDSA 414
Query: 483 SLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQVIINPLQESIFAFASA 538
LPGKL DC PE+ E++IVEGDSAGGSAKQGRDRRFQ I+ P++ I A
Sbjct: 415 RLPGKLIDCLEKDPEKCEMYIVEGDSAGGSAKQGRDRRFQAIL-PIRGKILNVEKA 469
>sp|P0C5C5|GYRB_MYCTU DNA gyrase subunit B OS=Mycobacterium tuberculosis GN=gyrB PE=1
SV=1
Length = 675
Score = 418 bits (1075), Expect = e-116, Method: Compositional matrix adjust.
Identities = 225/501 (44%), Positives = 314/501 (62%), Gaps = 40/501 (7%)
Query: 67 AFKENPVSKTYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGY 126
A ++ YG+ I +LEGLEAVRKRP MYIGSTG RGLHHL++E++DNAVDEA AGY
Sbjct: 2 AAQKKKAQDEYGAASITILEGLEAVRKRPGMYIGSTGERGLHHLIWEVVDNAVDEAMAGY 61
Query: 127 ASNIEVALLADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSG 186
A+ + V LL D V VAD+GRGIP+ H A+ ++ V+T LHAGGKF S Y++SG
Sbjct: 62 ATTVNVVLLEDGGVEVADDGRGIPVATH-ASGIPTVDVVMTQLHAGGKF--DSDAYAISG 118
Query: 187 GLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRF 246
GLHGVG+SVVNALS LEV + RDG E+ Q Y + +P+ P + G+ +RF
Sbjct: 119 GLHGVGVSVVNALSTRLEVEIKRDGYEWSQVYEKSEPLGLKQG--APTK---KTGSTVRF 173
Query: 247 WPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKE--------------------- 285
W D VF T ++D T+A R++E+AFLN LTI L E
Sbjct: 174 WADPAVFETT-EYDFETVARRLQEMAFLNKGLTINLTDERVTQDEVVDEVVSDVAEAPKS 232
Query: 286 -------DSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITIDLALQ 337
+ P K + + + GGL ++V+ +N K +H +V F G +++A+Q
Sbjct: 233 ASERAAESTAPHKVKSRTFHYPGGLVDFVKHINRTKNAIHSSIVDFSGKGTGHEVEIAMQ 292
Query: 338 WCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVR 397
W + YS+++ +AN+I T +GGTH EG +++LT +N K K +KDKD +L+G+ +R
Sbjct: 293 WNA-GYSESVHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDRKLLKDKDPNLTGDDIR 351
Query: 398 EGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSL 457
EGL +ISV+V P+FEGQTKT+LGN EV+ V + E LT + E +P +++K++
Sbjct: 352 EGLAAVISVKVSEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPTDAKVVVNKAV 411
Query: 458 SALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGR 517
S+ +A +AA++AR+LVR+KS LPGKLADC ST P +SE+++VEGDSAGGSAK GR
Sbjct: 412 SSAQARIAARKARELVRRKSATDIGGLPGKLADCRSTDPRKSELYVVEGDSAGGSAKSGR 471
Query: 518 DRRFQVIINPLQESIFAFASA 538
D FQ I+ PL+ I A
Sbjct: 472 DSMFQAIL-PLRGKIINVEKA 491
>sp|A5TY73|GYRB_MYCTA DNA gyrase subunit B OS=Mycobacterium tuberculosis (strain ATCC
25177 / H37Ra) GN=gyrB PE=3 SV=2
Length = 675
Score = 418 bits (1075), Expect = e-116, Method: Compositional matrix adjust.
Identities = 225/501 (44%), Positives = 314/501 (62%), Gaps = 40/501 (7%)
Query: 67 AFKENPVSKTYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGY 126
A ++ YG+ I +LEGLEAVRKRP MYIGSTG RGLHHL++E++DNAVDEA AGY
Sbjct: 2 AAQKKKAQDEYGAASITILEGLEAVRKRPGMYIGSTGERGLHHLIWEVVDNAVDEAMAGY 61
Query: 127 ASNIEVALLADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSG 186
A+ + V LL D V VAD+GRGIP+ H A+ ++ V+T LHAGGKF S Y++SG
Sbjct: 62 ATTVNVVLLEDGGVEVADDGRGIPVATH-ASGIPTVDVVMTQLHAGGKF--DSDAYAISG 118
Query: 187 GLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRF 246
GLHGVG+SVVNALS LEV + RDG E+ Q Y + +P+ P + G+ +RF
Sbjct: 119 GLHGVGVSVVNALSTRLEVEIKRDGYEWSQVYEKSEPLGLKQG--APTK---KTGSTVRF 173
Query: 247 WPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKE--------------------- 285
W D VF T ++D T+A R++E+AFLN LTI L E
Sbjct: 174 WADPAVFETT-EYDFETVARRLQEMAFLNKGLTINLTDERVTQDEVVDEVVSDVAEAPKS 232
Query: 286 -------DSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITIDLALQ 337
+ P K + + + GGL ++V+ +N K +H +V F G +++A+Q
Sbjct: 233 ASERAAESTAPHKVKSRTFHYPGGLVDFVKHINRTKNAIHSSIVDFSGKGTGHEVEIAMQ 292
Query: 338 WCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVR 397
W + YS+++ +AN+I T +GGTH EG +++LT +N K K +KDKD +L+G+ +R
Sbjct: 293 WNA-GYSESVHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDRKLLKDKDPNLTGDDIR 351
Query: 398 EGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSL 457
EGL +ISV+V P+FEGQTKT+LGN EV+ V + E LT + E +P +++K++
Sbjct: 352 EGLAAVISVKVSEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPTDAKVVVNKAV 411
Query: 458 SALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGR 517
S+ +A +AA++AR+LVR+KS LPGKLADC ST P +SE+++VEGDSAGGSAK GR
Sbjct: 412 SSAQARIAARKARELVRRKSATDIGGLPGKLADCRSTDPRKSELYVVEGDSAGGSAKSGR 471
Query: 518 DRRFQVIINPLQESIFAFASA 538
D FQ I+ PL+ I A
Sbjct: 472 DSMFQAIL-PLRGKIINVEKA 491
>sp|Q59533|GYRB_MYCLE DNA gyrase subunit B OS=Mycobacterium leprae (strain TN) GN=gyrB
PE=3 SV=2
Length = 678
Score = 414 bits (1065), Expect = e-115, Method: Compositional matrix adjust.
Identities = 227/493 (46%), Positives = 315/493 (63%), Gaps = 40/493 (8%)
Query: 77 YGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLA 136
YG+ I +LEGLEAVRKRP MY+GSTG RGLHHL++E++DN+VDEA AGYA+ ++V L
Sbjct: 11 YGAASITILEGLEAVRKRPGMYVGSTGERGLHHLIWEVVDNSVDEAMAGYATQVDVRLFD 70
Query: 137 DNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVV 196
D SV VADNGRGIP+ +H AT ++ V+T LHAGGKFGG SGY+VSGGLHGVG+SVV
Sbjct: 71 DGSVEVADNGRGIPVAVH-ATGVPTVDVVMTQLHAGGKFGGKDSGYNVSGGLHGVGVSVV 129
Query: 197 NALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTA 256
NALS +EV + RDG E+ Q Y + P ++ + GT IRFW D +F T
Sbjct: 130 NALSTRVEVDIKRDGYEWSQFYDKAVPGILKQG-----EATEATGTTIRFWADPDIFETT 184
Query: 257 IQFDHNTIAGRIRELAFLNPKLTIAL------------------------------RKED 286
++D T+A RI+E+AFLN LTI L E
Sbjct: 185 -KYDFGTVARRIQEVAFLNKGLTINLVDERVKQDEVVDDVVSDTAEAPVAMTVEEKSTES 243
Query: 287 SDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITIDLALQWCSDAYSD 345
S P K ++ + + GGL ++V+ +N K P+ ++ F G +++A+QW + YS+
Sbjct: 244 SAPHKVRHRTFHYPGGLVDFVKHINRTKTPIQQSIIDFDGKGAGHEVEVAMQW-NGGYSE 302
Query: 346 TMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIIS 405
++ +AN+I T +GGTH EG +++LT +N K K +KDKD +L+G+ +REGL +IS
Sbjct: 303 SVHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDKKLLKDKDPNLTGDDIREGLAAVIS 362
Query: 406 VRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALA 465
V+V P+FEGQTKT+LGN EV+ V + E L + E +P ++++K++S+ +A +A
Sbjct: 363 VKVSEPQFEGQTKTKLGNTEVKSFVQRVCNEQLIHWFEANPVDAKAVVNKAISSAQARIA 422
Query: 466 AKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQVII 525
A++AR+LVR+KS LPGKLADC ST P SE+++VEGDSAGGSAK GRD FQ I+
Sbjct: 423 ARKARELVRRKSATDLGGLPGKLADCRSTDPRSSELYVVEGDSAGGSAKSGRDSMFQAIL 482
Query: 526 NPLQESIFAFASA 538
PL+ I A
Sbjct: 483 -PLRGKIINVEKA 494
>sp|Q9A0L0|GYRB_STRP1 DNA gyrase subunit B OS=Streptococcus pyogenes serotype M1 GN=gyrB
PE=3 SV=1
Length = 650
Score = 414 bits (1064), Expect = e-115, Method: Compositional matrix adjust.
Identities = 228/465 (49%), Positives = 325/465 (69%), Gaps = 11/465 (2%)
Query: 75 KTYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVAL 134
+ Y + QIQVLEGLEAVR RP MYIGST GLHHLV+EI+DN++DEA AG+AS+I+V +
Sbjct: 13 QEYDASQIQVLEGLEAVRMRPGMYIGSTAKEGLHHLVWEIVDNSIDEALAGFASHIKVFI 72
Query: 135 LADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLS 194
ADNS++V D+GRGIP+D+ T + A+ETV TVLHAGGK GY VSGGLHGVG S
Sbjct: 73 EADNSITVVDDGRGIPVDIQAKTGRPAVETVFTVLHAGGK--FGGGGYKVSGGLHGVGSS 130
Query: 195 VVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFT 254
VVNALS L+V V+++G ++Q++ RG V L + + D GT + F PD ++FT
Sbjct: 131 VVNALSTQLDVRVYKNGQIHYQEFKRGAVVADLEV----IGTTDVTGTTVHFTPDPEIFT 186
Query: 255 TAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDK 314
QFD++ +A RI+ELAFLN L I++ + S E+ ++ + + GG+ YV++LN K
Sbjct: 187 ETTQFDYSVLAKRIQELAFLNRGLKISITDKRSGMEQEEH--FLYEGGIGSYVEFLNDKK 244
Query: 315 KPLHDVVGFRK-DVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRT 373
+ + + +++GI +++A+Q+ + +Y +T++ +AN+I T +GGTH +G +A+LTR
Sbjct: 245 DVIFETPIYTDGELEGIAVEVAMQYTT-SYQETVMSFANNIHTHEGGTHEQGFRAALTRV 303
Query: 374 LNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQS 433
+N KK+K +K+ + +L+GE VREGLT +ISV+ PNP+FEGQTKT+LGN EV K+ ++
Sbjct: 304 INDYAKKNKILKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNRL 363
Query: 434 VQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSS 493
E +L +P V I+ K + A KA +AAKRAR++ R+KS L S+LPGKLADCSS
Sbjct: 364 FSEAFQRFLLENPQVARKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADCSS 423
Query: 494 TTPEESEIFIVEGDSAGGSAKQGRDRRFQVIINPLQESIFAFASA 538
++E+FIVEGDSAGGSAK GR+R FQ I+ P++ I A
Sbjct: 424 NDANQNELFIVEGDSAGGSAKSGRNREFQAIL-PIRGKILNVEKA 467
>sp|P0C559|GYRB_MYCSM DNA gyrase subunit B OS=Mycobacterium smegmatis GN=gyrB PE=3 SV=1
Length = 675
Score = 413 bits (1062), Expect = e-114, Method: Compositional matrix adjust.
Identities = 228/501 (45%), Positives = 319/501 (63%), Gaps = 40/501 (7%)
Query: 67 AFKENPVSKTYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGY 126
A ++N K YG++ I +LEGLEAVRKRP MYIGSTG RGLHHL++E++DNAVDEA AG+
Sbjct: 2 AAQKNNAPKEYGADSITILEGLEAVRKRPGMYIGSTGERGLHHLIWEVVDNAVDEAMAGF 61
Query: 127 ASNIEVALLADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSG 186
A+ ++V + AD SV V D+GRGIP+++H AT ++ V+T LHAGGKF G + Y+VSG
Sbjct: 62 ATRVDVKIHADGSVEVRDDGRGIPVEMH-ATGMPTIDVVMTQLHAGGKFDGET--YAVSG 118
Query: 187 GLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRF 246
GLHGVG+SVVNALS LE TV RDG E+ Q Y R P + GT IRF
Sbjct: 119 GLHGVGVSVVNALSTRLEATVLRDGYEWFQYYDRSVP-----GKLKQGGETKETGTTIRF 173
Query: 247 WPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKED-------------------- 286
W D ++F T ++ T+A R++E+AFLN LTI L E
Sbjct: 174 WADPEIFETT-DYNFETVARRLQEMAFLNKGLTIELTDERVTAEEVVDDVVKDTAEAPKT 232
Query: 287 --------SDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITIDLALQ 337
+ P K ++ + + GGL +YV+ +N K P+ ++ F G +++A+Q
Sbjct: 233 ADEKAAEATGPSKVKHRVFHYPGGLVDYVKHINRTKTPIQQSIIDFDGKGPGHEVEIAMQ 292
Query: 338 WCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVR 397
W + YS+++ +AN+I T +GGTH EG +A+LT +N K K +KDKD +L+G+ +R
Sbjct: 293 WNA-GYSESVHTFANTINTHEGGTHEEGFRAALTSVVNRYAKDKKLLKDKDPNLTGDDIR 351
Query: 398 EGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSL 457
EGL +ISV+V P+FEGQTKT+LGN EV+ V + E L + E +P ++++K++
Sbjct: 352 EGLAAVISVKVAEPQFEGQTKTKLGNTEVKSFVQKICNEQLQHWFEANPAEAKTVVNKAV 411
Query: 458 SALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGR 517
S+ +A +AA++AR+LVR+KS LPGKLADC ST P +SE+++VEGDSAGGSAK GR
Sbjct: 412 SSAQARIAARKARELVRRKSATDIGGLPGKLADCRSTDPSKSELYVVEGDSAGGSAKSGR 471
Query: 518 DRRFQVIINPLQESIFAFASA 538
D FQ I+ PL+ I A
Sbjct: 472 DSMFQAIL-PLRGKIINVEKA 491
>sp|A0QNE0|GYRB_MYCS2 DNA gyrase subunit B OS=Mycobacterium smegmatis (strain ATCC 700084
/ mc(2)155) GN=gyrB PE=1 SV=1
Length = 675
Score = 413 bits (1062), Expect = e-114, Method: Compositional matrix adjust.
Identities = 228/501 (45%), Positives = 319/501 (63%), Gaps = 40/501 (7%)
Query: 67 AFKENPVSKTYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGY 126
A ++N K YG++ I +LEGLEAVRKRP MYIGSTG RGLHHL++E++DNAVDEA AG+
Sbjct: 2 AAQKNNAPKEYGADSITILEGLEAVRKRPGMYIGSTGERGLHHLIWEVVDNAVDEAMAGF 61
Query: 127 ASNIEVALLADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSG 186
A+ ++V + AD SV V D+GRGIP+++H AT ++ V+T LHAGGKF G + Y+VSG
Sbjct: 62 ATRVDVKIHADGSVEVRDDGRGIPVEMH-ATGMPTIDVVMTQLHAGGKFDGET--YAVSG 118
Query: 187 GLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRF 246
GLHGVG+SVVNALS LE TV RDG E+ Q Y R P + GT IRF
Sbjct: 119 GLHGVGVSVVNALSTRLEATVLRDGYEWFQYYDRSVP-----GKLKQGGETKETGTTIRF 173
Query: 247 WPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKED-------------------- 286
W D ++F T ++ T+A R++E+AFLN LTI L E
Sbjct: 174 WADPEIFETT-DYNFETVARRLQEMAFLNKGLTIELTDERVTAEEVVDDVVKDTAEAPKT 232
Query: 287 --------SDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITIDLALQ 337
+ P K ++ + + GGL +YV+ +N K P+ ++ F G +++A+Q
Sbjct: 233 ADEKAAEATGPSKVKHRVFHYPGGLVDYVKHINRTKTPIQQSIIDFDGKGPGHEVEIAMQ 292
Query: 338 WCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVR 397
W + YS+++ +AN+I T +GGTH EG +A+LT +N K K +KDKD +L+G+ +R
Sbjct: 293 WNA-GYSESVHTFANTINTHEGGTHEEGFRAALTSVVNRYAKDKKLLKDKDPNLTGDDIR 351
Query: 398 EGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSL 457
EGL +ISV+V P+FEGQTKT+LGN EV+ V + E L + E +P ++++K++
Sbjct: 352 EGLAAVISVKVAEPQFEGQTKTKLGNTEVKSFVQKICNEQLQHWFEANPAEAKTVVNKAV 411
Query: 458 SALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGR 517
S+ +A +AA++AR+LVR+KS LPGKLADC ST P +SE+++VEGDSAGGSAK GR
Sbjct: 412 SSAQARIAARKARELVRRKSATDIGGLPGKLADCRSTDPSKSELYVVEGDSAGGSAKSGR 471
Query: 518 DRRFQVIINPLQESIFAFASA 538
D FQ I+ PL+ I A
Sbjct: 472 DSMFQAIL-PLRGKIINVEKA 491
>sp|Q8P1M4|GYRB_STRP8 DNA gyrase subunit B OS=Streptococcus pyogenes serotype M18 (strain
MGAS8232) GN=gyrB PE=3 SV=1
Length = 650
Score = 413 bits (1061), Expect = e-114, Method: Compositional matrix adjust.
Identities = 228/465 (49%), Positives = 325/465 (69%), Gaps = 11/465 (2%)
Query: 75 KTYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVAL 134
+ Y + QIQVLEGLEAVR RP MYIGST GLHHLV+EI+DN++DEA AG+AS+I+V +
Sbjct: 13 QEYDASQIQVLEGLEAVRMRPGMYIGSTAKEGLHHLVWEIVDNSIDEALAGFASHIKVFI 72
Query: 135 LADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLS 194
ADNS++V D+GRGIP+D+ T + A+ETV TVLHAGGK GY VSGGLHGVG S
Sbjct: 73 EADNSITVVDDGRGIPVDIQAKTGRPAVETVFTVLHAGGK--FGGGGYKVSGGLHGVGSS 130
Query: 195 VVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFT 254
VVNALS L+V V+++G ++Q++ RG V L + + D GT + F PD ++FT
Sbjct: 131 VVNALSTQLDVRVYKNGQIHYQEFKRGAVVADLEI----IGTTDVTGTTVHFTPDPEIFT 186
Query: 255 TAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDK 314
QFD++ +A RI+ELAFLN L I++ + S E+ ++ + + GG+ YV++LN K
Sbjct: 187 ETTQFDYSVLAKRIQELAFLNRGLKISITDKRSGMEQEEH--FHYEGGIGSYVEFLNDKK 244
Query: 315 KPLHDVVGFRK-DVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRT 373
+ + + +++GI +++A+Q+ + +Y +T++ +AN+I T +GGTH +G +A+LTR
Sbjct: 245 DVIFETPIYTDGELEGIAVEVAMQYTT-SYQETVMSFANNIHTHEGGTHEQGFRAALTRV 303
Query: 374 LNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQS 433
+N KK+K +K+ + +L+GE VREGLT +ISV+ PNP+FEGQTKT+LGN EV K+ ++
Sbjct: 304 INDYAKKNKILKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNRL 363
Query: 434 VQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSS 493
E +L +P V I+ K + A KA +AAKRAR++ R+KS L S+LPGKLADCSS
Sbjct: 364 FSEAFQRFLLENPQVARKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADCSS 423
Query: 494 TTPEESEIFIVEGDSAGGSAKQGRDRRFQVIINPLQESIFAFASA 538
++E+FIVEGDSAGGSAK GR+R FQ I+ P++ I A
Sbjct: 424 NDANQNELFIVEGDSAGGSAKSGRNREFQAIL-PIRGKILNVEKA 467
>sp|Q5XD05|GYRB_STRP6 DNA gyrase subunit B OS=Streptococcus pyogenes serotype M6 (strain
ATCC BAA-946 / MGAS10394) GN=gyrB PE=3 SV=1
Length = 650
Score = 413 bits (1061), Expect = e-114, Method: Compositional matrix adjust.
Identities = 228/465 (49%), Positives = 325/465 (69%), Gaps = 11/465 (2%)
Query: 75 KTYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVAL 134
+ Y + QIQVLEGLEAVR RP MYIGST GLHHLV+EI+DN++DEA AG+AS+I+V +
Sbjct: 13 QEYDASQIQVLEGLEAVRMRPGMYIGSTAKEGLHHLVWEIVDNSIDEALAGFASHIKVFI 72
Query: 135 LADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLS 194
ADNS++V D+GRGIP+D+ T + A+ETV TVLHAGGK GY VSGGLHGVG S
Sbjct: 73 EADNSITVVDDGRGIPVDIQAKTGRPAVETVFTVLHAGGK--FGGGGYKVSGGLHGVGSS 130
Query: 195 VVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFT 254
VVNALS L+V V+++G ++Q++ RG V L + + D GT + F PD ++FT
Sbjct: 131 VVNALSTQLDVRVYKNGQIHYQEFKRGAVVADLEI----IGTTDVTGTTVHFTPDPEIFT 186
Query: 255 TAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDK 314
QFD++ +A RI+ELAFLN L I++ + S E+ ++ + + GG+ YV++LN K
Sbjct: 187 ETTQFDYSVLAKRIQELAFLNRGLKISITDKRSGMEQEEH--FHYEGGIGSYVEFLNDKK 244
Query: 315 KPLHDVVGFRK-DVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRT 373
+ + + +++GI +++A+Q+ + +Y +T++ +AN+I T +GGTH +G +A+LTR
Sbjct: 245 DVIFETPIYTDGELEGIAVEVAMQYTT-SYQETVMSFANNIHTHEGGTHEQGFRAALTRV 303
Query: 374 LNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQS 433
+N KK+K +K+ + +L+GE VREGLT +ISV+ PNP+FEGQTKT+LGN EV K+ ++
Sbjct: 304 INDYAKKNKILKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNRL 363
Query: 434 VQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSS 493
E +L +P V I+ K + A KA +AAKRAR++ R+KS L S+LPGKLADCSS
Sbjct: 364 FSEAFQRFLLENPQVARKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADCSS 423
Query: 494 TTPEESEIFIVEGDSAGGSAKQGRDRRFQVIINPLQESIFAFASA 538
++E+FIVEGDSAGGSAK GR+R FQ I+ P++ I A
Sbjct: 424 NDANQNELFIVEGDSAGGSAKSGRNREFQAIL-PIRGKILNVEKA 467
>sp|Q9X3Y6|GYRB_BACAN DNA gyrase subunit B OS=Bacillus anthracis GN=gyrB PE=3 SV=2
Length = 640
Score = 410 bits (1055), Expect = e-113, Method: Compositional matrix adjust.
Identities = 234/466 (50%), Positives = 311/466 (66%), Gaps = 16/466 (3%)
Query: 76 TYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALL 135
+Y QIQVLEGLEAVRKRP MYIGST +GLHHLV+EI+DN++DEA AGY I V++
Sbjct: 10 SYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCDEINVSIE 69
Query: 136 ADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSV 195
DNS+ V DNGRGIP+ + + A+E ++TVLHAGGKFGG S LHGVG SV
Sbjct: 70 EDNSIRVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGG--LHGVGASV 127
Query: 196 VNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTT 255
VNALS LEV V R+G ++QKY RG PV L + D+ GT RF PD ++F
Sbjct: 128 VNALSTELEVFVHREGKIHYQKYERGIPVADLKV----IGDTDQTGTITRFKPDPEIFQE 183
Query: 256 AIQFDHNTIAGRIRELAFLNP--KLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTD 313
++ +T+A R+RELAFLN KLTI ++E Q E+ + GG++ YV+ LN
Sbjct: 184 TTVYEFDTLATRMRELAFLNRNIKLTIEDKRE-----HKQKKEFHYEGGIKSYVEHLNRS 238
Query: 314 KKPLHDV-VGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTR 372
K+P+H+ V DGI ++++LQ+ ++ Y++ + + N+I T +GGTH G K +LTR
Sbjct: 239 KQPIHEEPVYVEGSKDGIQVEVSLQY-NEGYTNNIYSFTNNIHTYEGGTHEVGFKTALTR 297
Query: 373 TLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQ 432
+N G+K+ +KD D +L+GE VREGLT I+S++ PNP+FEGQTKT+LGN E R + +
Sbjct: 298 VINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITES 357
Query: 433 SVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCS 492
E ++L +P+V I+ K A +A +AAK+AR+L R+KS L SSLPGKLADCS
Sbjct: 358 VFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCS 417
Query: 493 STTPEESEIFIVEGDSAGGSAKQGRDRRFQVIINPLQESIFAFASA 538
S P SEI+IVEGDSAGGSAKQGRDR FQ I+ PL+ I A
Sbjct: 418 SKDPAISEIYIVEGDSAGGSAKQGRDRHFQAIL-PLKGKIINVEKA 462
>sp|O08399|GYRB_TREPA DNA gyrase subunit B OS=Treponema pallidum (strain Nichols) GN=gyrB
PE=1 SV=1
Length = 637
Score = 410 bits (1053), Expect = e-113, Method: Compositional matrix adjust.
Identities = 237/463 (51%), Positives = 307/463 (66%), Gaps = 28/463 (6%)
Query: 77 YGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLA 136
Y + I VLEGLEAVRKRP MYIGSTGP GLHHLVYE++DN +DEA AGY I V L
Sbjct: 5 YSASSITVLEGLEAVRKRPGMYIGSTGPNGLHHLVYEVVDNCIDEAMAGYCDRITVVLEQ 64
Query: 137 DNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVV 196
N V V DNGRGIP+D+HP SALE VLT LHAGGKF S Y VSGGLHGVG+SVV
Sbjct: 65 GNVVRVEDNGRGIPVDVHPHEGVSALEVVLTKLHAGGKFDKKS--YKVSGGLHGVGVSVV 122
Query: 197 NALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSK---DRQGTRIRFWPDKQVF 253
NALS +EVTV+RDG EY+QK++ G P+ PV+ + +++GT IR+ D +F
Sbjct: 123 NALSLWVEVTVYRDGAEYYQKFNVGMPLA-------PVEKRGVSEKRGTIIRWQADPSIF 175
Query: 254 TTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTD 313
+ +D + + R+RELAFLN + I LR E K E+ F GG+ +V +LN
Sbjct: 176 KETVAYDFDVLLTRLRELAFLNSTVVIQLRDERLATAKQV--EFAFEGGIRHFVSYLNRG 233
Query: 314 K-----KPLHDVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKA 368
K +PL+ + G + DV +++ALQ+ D Y++ + + N I T +GGTH+EG K+
Sbjct: 234 KSVVPERPLY-IEGSKSDV---LVEVALQY-HDGYTENVQSFVNDINTREGGTHLEGFKS 288
Query: 369 SLTRTLNSLGKKSKTVKDK---DISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPE 425
+LTR N KKS + K + L GE VR GLT ++SV++P P+FEGQTKT+LGN E
Sbjct: 289 ALTRVANDFLKKSPKLAKKIEREEKLVGEDVRAGLTVVLSVKIPEPQFEGQTKTKLGNSE 348
Query: 426 VRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLP 485
VR +VD V E LT Y E +P VL IL KS++ +A LAA+RA++ R+KS + S LP
Sbjct: 349 VRGIVDSLVGERLTLYFEQNPGVLTKILEKSIAEAQARLAARRAKEAARRKSGMDSFGLP 408
Query: 486 GKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQVIINPL 528
GKLADCS P + E++IVEGDSAGGSAK+GRD + Q I+ PL
Sbjct: 409 GKLADCSLKDPAKCEVYIVEGDSAGGSAKKGRDSKTQAIL-PL 450
>sp|O33367|GYRB_MYXXA DNA gyrase subunit B OS=Myxococcus xanthus GN=gyrB PE=3 SV=1
Length = 815
Score = 409 bits (1050), Expect = e-113, Method: Compositional matrix adjust.
Identities = 229/464 (49%), Positives = 310/464 (66%), Gaps = 15/464 (3%)
Query: 72 PVSKTYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIE 131
P YG++ I LEG EAVRKRP MYIG T GLH LVYE++DNAVDE+ AG+ ++IE
Sbjct: 13 PPPVEYGTDSITKLEGREAVRKRPGMYIGDTMAYGLHKLVYEVVDNAVDESLAGHCTDIE 72
Query: 132 VALLADNSVSVADNGRGIPIDLHPA-TNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHG 190
V + D S+SV DNGRGIP+ HP K LE VLT LHAG KFG + Y VSGGLHG
Sbjct: 73 VVIHVDGSLSVQDNGRGIPVGPHPKFPGKDTLEVVLTELHAGSKFG--NGAYKVSGGLHG 130
Query: 191 VGLSVVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDK 250
VG++ VN LSE +V V R+G+ Y Q Y++G P T V + D++GT I F PD
Sbjct: 131 VGVTCVNFLSEWFKVRVHRNGIVYEQAYAQGVPDTPPR----EVGTTDKRGTHIAFKPDA 186
Query: 251 QVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWL 310
V ++F+ T++ R+RELAFLN L I +R E + N+ +++ F GG+ +V++L
Sbjct: 187 TVMEL-VEFNFETLSQRLRELAFLNAGLHIVVRDERT----NKEHDFKFDGGISSFVEYL 241
Query: 311 NTDKKPLHDV-VGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKAS 369
N K+ LHD + F + +G+ +D+A+QW +D Y + + +AN+I T +GG+H+ G KA+
Sbjct: 242 NKSKQTLHDKPISFSTEREGVMLDIAMQW-NDGYDERIYTFANNINTHEGGSHLSGFKAA 300
Query: 370 LTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKV 429
LTRTLNS +K KD + +GE REGL+ +ISV++ NP+FEGQTKT+LGN EV+ +
Sbjct: 301 LTRTLNSYAEKGSLWKDLKETPTGEDAREGLSAVISVKLTNPQFEGQTKTKLGNSEVKGL 360
Query: 430 VDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLA 489
V+Q V + L +LE P V +++K A +A LAA++AR+ VR+K VL LPGKLA
Sbjct: 361 VEQMVNDQLGSFLEETPMVAKKVVAKIGDACRARLAARKARETVRRKGVLDGGGLPGKLA 420
Query: 490 DCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQVIINPLQESIF 533
DC P ESE++IVEGDSAGGSAKQGRDRR Q I+ PL+ I
Sbjct: 421 DCQIRDPNESELYIVEGDSAGGSAKQGRDRRNQAIL-PLRGKIL 463
>sp|P29435|GYRB_BUCAP DNA gyrase subunit B OS=Buchnera aphidicola subsp. Schizaphis
graminum (strain Sg) GN=gyrB PE=3 SV=3
Length = 803
Score = 408 bits (1048), Expect = e-113, Method: Compositional matrix adjust.
Identities = 206/466 (44%), Positives = 311/466 (66%), Gaps = 26/466 (5%)
Query: 76 TYGSEQIQVLEGLEAVRKRPAMYIGSTGP-RGLHHLVYEILDNAVDEAQAGYASNIEVAL 134
TY S +I++L GL+AVRKRP MYIG T GLHH+V+EI+DN++DEA AG+ I+V +
Sbjct: 4 TYDSSKIKILRGLDAVRKRPGMYIGDTDDGSGLHHMVFEIVDNSIDEALAGFCKEIKVVI 63
Query: 135 LADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLS 194
+DNSVS+ D+GRGIP D+HP SA E ++TVLH+GGKF +S Y +SGGLHGVG+S
Sbjct: 64 HSDNSVSIKDDGRGIPTDIHPEEKISAAEVIMTVLHSGGKFDNAS--YKISGGLHGVGIS 121
Query: 195 VVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFT 254
VVNALSE LE+ ++++ +Y Q+Y G P + L + + + GT IRFWP ++FT
Sbjct: 122 VVNALSEKLELIIYKNKKKYRQQYKNGNPESPLCI----IGATEITGTYIRFWPSYKIFT 177
Query: 255 TAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDK 314
QF + ++ R+REL+FLN + I L+ D N +Y + GG++ ++++LN +K
Sbjct: 178 NKTQFQYEILSKRLRELSFLNSNILIHLK----DNRTNLEEKYHYKGGIKAFIKFLNKNK 233
Query: 315 KPLH-DVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRT 373
P++ ++ FR + I +++A+QW ++++ + +L + N+I DGGTH+ G +A +TRT
Sbjct: 234 FPINLNIFYFRCIKNQIELEIAIQW-NNSHQENILCFTNNIPQKDGGTHLSGFRAGITRT 292
Query: 374 LN------SLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVR 427
LN KK+KT+ ++GE REGLT IIS+++P+P+F QTK +L + EV+
Sbjct: 293 LNLHIEREGYNKKNKTI------ITGEDTREGLTAIISIKIPDPKFSSQTKDKLVSSEVK 346
Query: 428 KVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGK 487
V++ + E L EYL +P I+ K +++ K AA+RAR++ ++K L +LPGK
Sbjct: 347 SVIESLINENLIEYLLENPIDAKFIIQKIINSAKIREAARRAREINKKKGTLDLGTLPGK 406
Query: 488 LADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQVIINPLQESIF 533
L+DC P+ SEI++VEGDSAGGSAKQGR+R+ Q I+ PL+ I
Sbjct: 407 LSDCQENDPKLSEIYLVEGDSAGGSAKQGRNRKNQAIL-PLKGKIL 451
>sp|O29720|GYRB_ARCFU DNA gyrase subunit B OS=Archaeoglobus fulgidus (strain ATCC 49558 /
VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=gyrB PE=3
SV=2
Length = 632
Score = 407 bits (1046), Expect = e-112, Method: Compositional matrix adjust.
Identities = 224/462 (48%), Positives = 308/462 (66%), Gaps = 14/462 (3%)
Query: 77 YGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLA 136
Y ++ I+VL+ LEAVRKRP MYIG G RGLHHL++E++DNAVDEA AGY I+V+L
Sbjct: 10 YTAKDIEVLDDLEAVRKRPGMYIGGVGVRGLHHLLWEVVDNAVDEALAGYCDTIKVSLHK 69
Query: 137 DNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVV 196
D S SV DNGRGIP ++H KSALE V+T LHAGGKF S Y VSGGLHGVG+SVV
Sbjct: 70 DGSASVEDNGRGIPTEMHE-LGKSALEIVMTKLHAGGKF--SKKVYRVSGGLHGVGVSVV 126
Query: 197 NALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTA 256
NALSE LEV V R+G Y+QKY RG + GT +RF PD+++F T
Sbjct: 127 NALSEWLEVWVKRNGKIYYQKYQRGSRSPEAGHRTEVLGETKEHGTTVRFKPDREIFETT 186
Query: 257 IQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKP 316
+F + +A R++ELA+LN L I L E E+ + F G+ V+ LN ++KP
Sbjct: 187 -EFKYEIVAQRLKELAYLNRGLKIILFDEREGKEET----FHFEDGIIGLVRSLNRNRKP 241
Query: 317 LHDVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNS 376
LH+ + DG+++++A+Q+ +D+ + + +AN+I T +GG+H+ G +A LTR +N
Sbjct: 242 LHEPIYIETTKDGVSVEVAIQF-TDSDVENIQAFANNINTSEGGSHVVGFRAGLTRAVNE 300
Query: 377 LGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQE 436
GKK K ++G +REGLT +ISV+VP P+FEGQTKT+L N +V+ VV+ +V
Sbjct: 301 YGKKHLK---KFEPVTGVDIREGLTAVISVKVPEPQFEGQTKTKLTNSDVKTVVESAVYS 357
Query: 437 YLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTP 496
+ +LE +P +++L+K + KA AAKRA++LV++K+ L ++LPGKLADCSS P
Sbjct: 358 GVLRWLEENPAQAETLLNKFILNKKAREAAKRAKELVKRKNEL-ITTLPGKLADCSSKNP 416
Query: 497 EESEIFIVEGDSAGGSAKQGRDRRFQVIINPLQESIFAFASA 538
EE E+FIVEG+SAGGSAKQ RDRRFQ I+ P++ I A
Sbjct: 417 EERELFIVEGESAGGSAKQARDRRFQAIL-PIKGKIINVEKA 457
>sp|P33769|GYRB_BORBU DNA gyrase subunit B OS=Borrelia burgdorferi (strain ATCC 35210 /
B31 / CIP 102532 / DSM 4680) GN=gyrB PE=3 SV=4
Length = 634
Score = 405 bits (1041), Expect = e-112, Method: Compositional matrix adjust.
Identities = 222/458 (48%), Positives = 311/458 (67%), Gaps = 20/458 (4%)
Query: 76 TYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALL 135
Y + IQVL+GLEAVRKRP MYIGS GLHHLVYE++DN++DEA AG+ I+V +
Sbjct: 2 NYVASNIQVLKGLEAVRKRPGMYIGSVSINGLHHLVYEVVDNSIDEALAGFCDRIDVIIN 61
Query: 136 ADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSV 195
DN+++V DNGRGIP D+H SALE VLT LH+GGKF + Y VSGGLHGVG+SV
Sbjct: 62 LDNTITVIDNGRGIPTDIHEEEGISALELVLTKLHSGGKFNKGT--YKVSGGLHGVGISV 119
Query: 196 VNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTT 255
VNALS LEV V RDG + Q +S+G P T V V GT++ F D ++F T
Sbjct: 120 VNALSSFLEVYVNRDGKIFRQTFSKGIP----TSKVEVVGESSVTGTKVTFLADSEIFET 175
Query: 256 AIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKK 315
+ ++ + + R++ELAFLN K+ I++ ED K + ++++F GG++ +V +L D K
Sbjct: 176 -LDYNFDVLEKRLKELAFLNDKIYISI--EDKRIGKEKSSKFYFEGGIKSFVDYLTNDSK 232
Query: 316 PLHD----VVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLT 371
+ GF DV +++ L+W +++YSD +L + N+I T +GGTH+ G ++ LT
Sbjct: 233 AFQSEPYYIDGFINDV---IVNVGLKW-TESYSDNILSFVNNINTREGGTHVMGFRSGLT 288
Query: 372 RTLNSLGKKSKTVKDKDI-SLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVV 430
+ +N K SK K KDI +L+G+ +EGLT +ISV+VP P+FEGQTK++LGN E+RK+V
Sbjct: 289 KAMNEAFKNSKISK-KDIPNLTGDDFKEGLTAVISVKVPEPQFEGQTKSKLGNSEIRKIV 347
Query: 431 DQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLAD 490
+ V E+L E + L+P +D+IL K++ A +A AA++AR+ R+K+ S +LPGKLAD
Sbjct: 348 EVVVYEHLLEIINLNPLEIDTILGKAIKAARAREAARKARESERKKNAFESLALPGKLAD 407
Query: 491 CSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQVIINPL 528
C+S P E EI+IVEGDSAGGSAK GR+R FQ I+ PL
Sbjct: 408 CTSKNPLEREIYIVEGDSAGGSAKMGRNRFFQAIL-PL 444
>sp|P57126|GYRB_BUCAI DNA gyrase subunit B OS=Buchnera aphidicola subsp. Acyrthosiphon
pisum (strain APS) GN=gyrB PE=3 SV=1
Length = 803
Score = 404 bits (1038), Expect = e-112, Method: Compositional matrix adjust.
Identities = 211/459 (45%), Positives = 304/459 (66%), Gaps = 14/459 (3%)
Query: 77 YGSEQIQVLEGLEAVRKRPAMYIGSTGP-RGLHHLVYEILDNAVDEAQAGYASNIEVALL 135
Y S I++L GL+AVRKRP MYIG T GLHH+V+EI+DN++DEA +GY I V +
Sbjct: 5 YDSSNIKILRGLDAVRKRPGMYIGDTDDGSGLHHMVFEIVDNSIDEALSGYCKEIIVTIH 64
Query: 136 ADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSV 195
+DNSVSV D+GRGIP D+HP N SA E +LTVLH+GGKF +S Y +SGGLHGVG+SV
Sbjct: 65 SDNSVSVKDDGRGIPTDIHPEENISAAEVILTVLHSGGKFDNAS--YQISGGLHGVGISV 122
Query: 196 VNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTT 255
VNALSE LE+ + ++ +Y Q Y GKP L+ + + D GT IRFWP + FT
Sbjct: 123 VNALSEKLELIIDKNKKKYQQIYRHGKPENPLSI----IGTTDTTGTYIRFWPSYKTFTN 178
Query: 256 AIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKK 315
I+F + ++ R+REL+FLN + I L D + N Y + GG++ ++++LN K
Sbjct: 179 NIKFQYEILSKRLRELSFLNSNIAIYL----EDNRTSIKNCYHYKGGIKAFIKFLNAKKT 234
Query: 316 PLH-DVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTL 374
P+H + FR D I +++A+QW ++++ + +L + N+I DGGTH+ G ++ +TRTL
Sbjct: 235 PIHTHIFYFRSTKDQIELEIAMQW-NNSHQENILCFTNNIPQKDGGTHLAGFRSGMTRTL 293
Query: 375 NSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSV 434
N ++ K ++ GE VREGLT IIS+++P+P+F QTK +L + E R V++ +
Sbjct: 294 NLHIEREGYNKKNKTTIIGEDVREGLTAIISIKIPDPKFSSQTKDKLVSSEARSVIESLI 353
Query: 435 QEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSST 494
E L EYL +P I+ K ++A K AA+RAR++ ++KS+L +LPGKL+DC
Sbjct: 354 NENLIEYLLENPSDSKFIIQKIINAAKVREAARRAREINKKKSILDLGALPGKLSDCQEN 413
Query: 495 TPEESEIFIVEGDSAGGSAKQGRDRRFQVIINPLQESIF 533
P+ SEI++VEGDSAGGSAKQGR+R+ Q I+ PL+ I
Sbjct: 414 DPKFSEIYLVEGDSAGGSAKQGRNRKNQAIL-PLKGKIL 451
>sp|O87545|GYRB_TREDE DNA gyrase subunit B OS=Treponema denticola (strain ATCC 35405 /
CIP 103919 / DSM 14222) GN=gyrB PE=3 SV=1
Length = 638
Score = 403 bits (1036), Expect = e-111, Method: Compositional matrix adjust.
Identities = 225/458 (49%), Positives = 306/458 (66%), Gaps = 16/458 (3%)
Query: 76 TYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALL 135
Y + I VL+GLEAVRKRP MYIGSTGP GLHHLVYE++DN +DEA AG+ I V L
Sbjct: 5 NYSANNITVLKGLEAVRKRPGMYIGSTGPDGLHHLVYEVVDNCIDEAMAGFCDKILVVLE 64
Query: 136 ADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSV 195
++ V V DNGRGIP+D+HP SALE VLT LHAGGKF S Y VSGGLHGVG+SV
Sbjct: 65 PNDIVRVEDNGRGIPVDIHPTEKISALELVLTRLHAGGKFDKGS--YKVSGGLHGVGVSV 122
Query: 196 VNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTT 255
VNALS +E V++DG E++ K+ +G ++ V + ++ GT IR+ D +FT
Sbjct: 123 VNALSVWMEAKVYKDGFEHYAKFEKG----SILEPVKKIGETEKSGTVIRWAVDPSIFTE 178
Query: 256 AIQFDHNTIAGRIRELAFLNPKLTIALRKED-SDPEKNQYNEYFFAGGLEEYVQWLNTDK 314
++ +A R+RELAFLN K++I +R E S P++ + F GG+ ++V +LN K
Sbjct: 179 TTVYNFEVLATRLRELAFLNSKISITMRDERLSTPKEVTFA---FEGGISQFVSYLNESK 235
Query: 315 KPL-HDVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRT 373
+ V + + I ++A+Q+ +D Y++ +L + N I T +GGTH+EG K +LTR
Sbjct: 236 QVFPKSPVFIEGEKNDILCEVAIQY-NDGYNENLLSFVNDINTREGGTHLEGFKTALTRV 294
Query: 374 LNSLGKK-SKTVK--DKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVV 430
+N KK K VK DK+ L+GE VR GLT I+SV+VP P+FEGQTKT+LGN +VR +V
Sbjct: 295 MNDFLKKYPKLVKKMDKEEKLTGEDVRAGLTAIVSVKVPEPQFEGQTKTKLGNSDVRGIV 354
Query: 431 DQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLAD 490
D V E LT + E +P+ ++ +L K ++ A +AA+RA++ R+KS L S LPGKLAD
Sbjct: 355 DSFVNEKLTLFFEQNPNEVEKVLEKCVAEAAARIAARRAKEATRRKSGLDSFGLPGKLAD 414
Query: 491 CSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQVIINPL 528
CS PE E++IVEGDSAGGSAK+GRD + Q I+ PL
Sbjct: 415 CSLKDPESCEVYIVEGDSAGGSAKKGRDSKTQAIL-PL 451
>sp|P0A2I3|GYRB_SALTY DNA gyrase subunit B OS=Salmonella typhimurium (strain LT2 /
SGSC1412 / ATCC 700720) GN=gyrB PE=3 SV=2
Length = 804
Score = 402 bits (1032), Expect = e-111, Method: Compositional matrix adjust.
Identities = 214/468 (45%), Positives = 307/468 (65%), Gaps = 14/468 (2%)
Query: 73 VSKTYGSEQIQVLEGLEAVRKRPAMYIGSTGP-RGLHHLVYEILDNAVDEAQAGYASNIE 131
+S +Y S I+VL+GL+AVRKRP MYIG T GLHH+V+E++DNA+DEA AG+ +I
Sbjct: 1 MSNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKDIV 60
Query: 132 VALLADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGV 191
V + ADNSVSV D+GRGIP +HP SA E ++TVLHAGGKF +S Y VSGGLHGV
Sbjct: 61 VTIHADNSVSVTDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNS--YKVSGGLHGV 118
Query: 192 GLSVVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQ 251
G+SVVNALS+ LE+ + RDG + Q Y G P L D+ GT +RFWP +
Sbjct: 119 GVSVVNALSQKLELVIQRDGKIHRQIYEHGVPQAPLAV----TGDTDKTGTMVRFWPSHE 174
Query: 252 VFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLN 311
FT +F++ +A R+REL+FLN ++I LR D + + + + GG++ +V++LN
Sbjct: 175 TFTNVTEFEYEILAKRLRELSFLNSGVSIRLR----DKRDGKEDHFHYEGGIKAFVEYLN 230
Query: 312 TDKKPLH-DVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASL 370
+K P+H ++ F + DGI +++ALQW +D + + + + N+I DGGTH+ G +A++
Sbjct: 231 KNKTPIHPNIFYFSTEKDGIGVEVALQW-NDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289
Query: 371 TRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVV 430
TRTLN+ K K +S +G+ REGL ++SV+VP+P+F QTK +L + EV+ V
Sbjct: 290 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349
Query: 431 DQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLAD 490
+Q + E L+EYL +P ++ K + A +A AA+RAR++ R+K L + LPGKLAD
Sbjct: 350 EQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLAD 409
Query: 491 CSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQVIINPLQESIFAFASA 538
C P SE+++VEGDSAGGSAKQGR+R+ Q I+ PL+ I A
Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAIL-PLKGKILNVEKA 456
>sp|P0A2I4|GYRB_SALTI DNA gyrase subunit B OS=Salmonella typhi GN=gyrB PE=3 SV=2
Length = 804
Score = 402 bits (1032), Expect = e-111, Method: Compositional matrix adjust.
Identities = 214/468 (45%), Positives = 307/468 (65%), Gaps = 14/468 (2%)
Query: 73 VSKTYGSEQIQVLEGLEAVRKRPAMYIGSTGP-RGLHHLVYEILDNAVDEAQAGYASNIE 131
+S +Y S I+VL+GL+AVRKRP MYIG T GLHH+V+E++DNA+DEA AG+ +I
Sbjct: 1 MSNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKDIV 60
Query: 132 VALLADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGV 191
V + ADNSVSV D+GRGIP +HP SA E ++TVLHAGGKF +S Y VSGGLHGV
Sbjct: 61 VTIHADNSVSVTDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNS--YKVSGGLHGV 118
Query: 192 GLSVVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQ 251
G+SVVNALS+ LE+ + RDG + Q Y G P L D+ GT +RFWP +
Sbjct: 119 GVSVVNALSQKLELVIQRDGKIHRQIYEHGVPQAPLAV----TGDTDKTGTMVRFWPSHE 174
Query: 252 VFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLN 311
FT +F++ +A R+REL+FLN ++I LR D + + + + GG++ +V++LN
Sbjct: 175 TFTNVTEFEYEILAKRLRELSFLNSGVSIRLR----DKRDGKEDHFHYEGGIKAFVEYLN 230
Query: 312 TDKKPLH-DVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASL 370
+K P+H ++ F + DGI +++ALQW +D + + + + N+I DGGTH+ G +A++
Sbjct: 231 KNKTPIHPNIFYFSTEKDGIGVEVALQW-NDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289
Query: 371 TRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVV 430
TRTLN+ K K +S +G+ REGL ++SV+VP+P+F QTK +L + EV+ V
Sbjct: 290 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349
Query: 431 DQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLAD 490
+Q + E L+EYL +P ++ K + A +A AA+RAR++ R+K L + LPGKLAD
Sbjct: 350 EQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLAD 409
Query: 491 CSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQVIINPLQESIFAFASA 538
C P SE+++VEGDSAGGSAKQGR+R+ Q I+ PL+ I A
Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAIL-PLKGKILNVEKA 456
>sp|P0A4M0|GYRB_STRR6 DNA gyrase subunit B OS=Streptococcus pneumoniae (strain ATCC
BAA-255 / R6) GN=gyrB PE=3 SV=1
Length = 648
Score = 400 bits (1029), Expect = e-110, Method: Compositional matrix adjust.
Identities = 228/475 (48%), Positives = 323/475 (68%), Gaps = 12/475 (2%)
Query: 65 TEAFKENPVSKTYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQA 124
TE K N ++ Y + QIQVLEGLEAVR RP MYIGST GLHHLV+EI+DN++DEA A
Sbjct: 2 TEEIK-NLQAQDYDASQIQVLEGLEAVRMRPGMYIGSTSKEGLHHLVWEIVDNSIDEALA 60
Query: 125 GYASNIEVALLADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSV 184
G+AS+I+V + D+S++V D+GRGIP+D+ T + A+ETV TVLHAGGKFGG S
Sbjct: 61 GFASHIQVFIEPDDSITVVDDGRGIPVDIQEKTGRPAVETVFTVLHAGGKFGGGGYKVSG 120
Query: 185 SGGLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRI 244
LHGVG SVVNALS L+V V ++G ++Q+Y RG V L V D+ GT +
Sbjct: 121 G--LHGVGSSVVNALSTQLDVHVHKNGKIHYQEYRRGHVVADLEI----VGDTDKTGTTV 174
Query: 245 RFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLE 304
F PD ++FT FD + + RI+ELAFLN L I++ + E+ ++ Y + GG+
Sbjct: 175 HFTPDPKIFTETTIFDFDKLNKRIQELAFLNRGLQISITDKRQGLEQTKH--YHYEGGIA 232
Query: 305 EYVQWLNTDKKPLHDVVGFRK-DVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHI 363
YV+++N +K + D + ++D IT+++A+Q+ + Y + ++ +AN+I T +GGTH
Sbjct: 233 SYVEYINENKDVIFDTPIYTDGEMDDITVEVAMQYTT-GYHENVMSFANNIHTHEGGTHE 291
Query: 364 EGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGN 423
+G + +LTR +N +K+K +KD + +L+GE VREGLT +ISV+ PNP+FEGQTKT+LGN
Sbjct: 292 QGFRTALTRVINDYARKNKLLKDNEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGN 351
Query: 424 PEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSS 483
EV K+ ++ E +++L +P + I+ K + A KA +AAKRAR++ R+KS L S+
Sbjct: 352 SEVVKITNRLFSEAFSDFLMENPQIAKRIVEKGILAAKARVAAKRAREVTRKKSGLEISN 411
Query: 484 LPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQVIINPLQESIFAFASA 538
LPGKLADCSS P E+E+FIVEGDSAGGSAK GR+R FQ I+ P++ I A
Sbjct: 412 LPGKLADCSSNNPAETELFIVEGDSAGGSAKSGRNREFQAIL-PIRGKILNVEKA 465
>sp|P0A4L9|GYRB_STRPN DNA gyrase subunit B OS=Streptococcus pneumoniae serotype 4 (strain
ATCC BAA-334 / TIGR4) GN=gyrB PE=3 SV=1
Length = 648
Score = 400 bits (1029), Expect = e-110, Method: Compositional matrix adjust.
Identities = 228/475 (48%), Positives = 323/475 (68%), Gaps = 12/475 (2%)
Query: 65 TEAFKENPVSKTYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQA 124
TE K N ++ Y + QIQVLEGLEAVR RP MYIGST GLHHLV+EI+DN++DEA A
Sbjct: 2 TEEIK-NLQAQDYDASQIQVLEGLEAVRMRPGMYIGSTSKEGLHHLVWEIVDNSIDEALA 60
Query: 125 GYASNIEVALLADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSV 184
G+AS+I+V + D+S++V D+GRGIP+D+ T + A+ETV TVLHAGGKFGG S
Sbjct: 61 GFASHIQVFIEPDDSITVVDDGRGIPVDIQEKTGRPAVETVFTVLHAGGKFGGGGYKVSG 120
Query: 185 SGGLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRI 244
LHGVG SVVNALS L+V V ++G ++Q+Y RG V L V D+ GT +
Sbjct: 121 G--LHGVGSSVVNALSTQLDVHVHKNGKIHYQEYRRGHVVADLEI----VGDTDKTGTTV 174
Query: 245 RFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLE 304
F PD ++FT FD + + RI+ELAFLN L I++ + E+ ++ Y + GG+
Sbjct: 175 HFTPDPKIFTETTIFDFDKLNKRIQELAFLNRGLQISITDKRQGLEQTKH--YHYEGGIA 232
Query: 305 EYVQWLNTDKKPLHDVVGFRK-DVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHI 363
YV+++N +K + D + ++D IT+++A+Q+ + Y + ++ +AN+I T +GGTH
Sbjct: 233 SYVEYINENKDVIFDTPIYTDGEMDDITVEVAMQYTT-GYHENVMSFANNIHTHEGGTHE 291
Query: 364 EGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGN 423
+G + +LTR +N +K+K +KD + +L+GE VREGLT +ISV+ PNP+FEGQTKT+LGN
Sbjct: 292 QGFRTALTRVINDYARKNKLLKDNEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGN 351
Query: 424 PEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSS 483
EV K+ ++ E +++L +P + I+ K + A KA +AAKRAR++ R+KS L S+
Sbjct: 352 SEVVKITNRLFSEAFSDFLMENPQIAKRIVEKGILAAKARVAAKRAREVTRKKSGLEISN 411
Query: 484 LPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQVIINPLQESIFAFASA 538
LPGKLADCSS P E+E+FIVEGDSAGGSAK GR+R FQ I+ P++ I A
Sbjct: 412 LPGKLADCSSNNPAETELFIVEGDSAGGSAKSGRNREFQAIL-PIRGKILNVEKA 465
>sp|P50074|GYRBR_STRSH DNA gyrase subunit B, novobiocin-resistant OS=Streptomyces
spheroides GN=gyrBR PE=2 SV=1
Length = 677
Score = 397 bits (1021), Expect = e-110, Method: Compositional matrix adjust.
Identities = 227/482 (47%), Positives = 307/482 (63%), Gaps = 27/482 (5%)
Query: 74 SKTYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVA 133
+ +Y + I VL+GL+AVRKRP MYIGSTG RGLHHLV E++DN+VDEA AG A I+V
Sbjct: 23 TASYDANAITVLDGLDAVRKRPGMYIGSTGERGLHHLVQELVDNSVDEALAGVADRIDVT 82
Query: 134 LLADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGL 193
+LAD V V DNGRGIP+ +HP + A+E VLTVLHAGGKFGG G S LHGVGL
Sbjct: 83 VLADGGVRVVDNGRGIPVGMHPVEKRPAVEVVLTVLHAGGKFGGGGYGVSGG--LHGVGL 140
Query: 194 SVVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVF 253
SVVNALS L +W DG + Q Y G P L H ++ R GT + FW D +F
Sbjct: 141 SVVNALSTRLSAEIWTDGHRWTQDYRDGAPTAPLARH----EATSRTGTSLTFWADGDIF 196
Query: 254 TTAIQFDHNTIAGRIRELAFLNPKLTIALRKE-------------DSDPEKNQYNEYFFA 300
T ++ T+A R +E+AFLN LT+ L E DSDP + Y +
Sbjct: 197 ETT-EYSFETLARRHQEMAFLNGGLTLTLTDERSSARATAAVDEADSDPTAKTVS-YRYD 254
Query: 301 GGLEEYVQWLNTDK-KPLHDVVGFRKDVDG---ITIDLALQWCSDAYSDTMLGYANSIRT 356
GG+ ++V LN K +P H V D ++ ++ALQW Y+D++ YAN+I T
Sbjct: 255 GGITDFVVHLNARKGEPAHPSVITIAAEDTERLLSAEIALQWNGQ-YTDSVYSYANAIHT 313
Query: 357 IDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQ 416
+GGTH EG + +LT +N ++ + ++DKD +LSGE +REGLT IISV V P+FEGQ
Sbjct: 314 HEGGTHEEGFRTALTTVVNRYAREKRLLRDKDANLSGEDIREGLTAIISVNVGEPQFEGQ 373
Query: 417 TKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQK 476
TKT+LGN EVR ++ + V E+L ++ + +P+ I+ K++ A A +AA++ARDL R+K
Sbjct: 374 TKTKLGNTEVRTLLQKIVHEHLADWFDRNPNEAVDIVRKAVQAATARVAARKARDLTRRK 433
Query: 477 SVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQVIINPLQESIFAFA 536
+L +++LPGKL+DC S P SEIFIVEGDSAGGSAK GR+ ++Q I+ P++ I
Sbjct: 434 GLLETAALPGKLSDCQSNDPATSEIFIVEGDSAGGSAKAGRNPQYQAIL-PIRGKILNVE 492
Query: 537 SA 538
A
Sbjct: 493 KA 494
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.133 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 192,756,731
Number of Sequences: 539616
Number of extensions: 8113780
Number of successful extensions: 24917
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 50
Number of HSP's that attempted gapping in prelim test: 24023
Number of HSP's gapped (non-prelim): 220
length of query: 538
length of database: 191,569,459
effective HSP length: 122
effective length of query: 416
effective length of database: 125,736,307
effective search space: 52306303712
effective search space used: 52306303712
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)