Query 009294
Match_columns 538
No_of_seqs 252 out of 1599
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 23:15:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009294.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009294hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lnu_A Topoisomerase IV subuni 100.0 6E-111 2E-115 885.5 39.6 386 75-476 22-408 (408)
2 1ei1_A DNA gyrase B, GYRB; ATP 100.0 2E-107 7E-112 860.4 41.8 387 75-472 2-390 (391)
3 4gfh_A DNA topoisomerase 2; to 100.0 6E-110 2E-114 972.8 24.8 435 75-538 5-484 (1177)
4 1s16_A Topoisomerase IV subuni 100.0 3E-104 9E-109 837.0 43.6 383 75-471 3-387 (390)
5 1kij_A DNA gyrase subunit B; t 100.0 9.1E-98 3E-102 788.0 39.1 386 76-472 2-389 (390)
6 1pvg_A DNA topoisomerase II; G 100.0 9.1E-96 3E-100 775.3 30.9 362 74-467 9-416 (418)
7 1zxm_A TOPO IIA ATPase, DNA to 100.0 5.2E-96 2E-100 773.9 27.8 361 79-463 3-394 (400)
8 3cwv_A DNA gyrase, B subunit, 100.0 2E-89 6.9E-94 718.2 31.4 344 84-460 8-362 (369)
9 4duh_A DNA gyrase subunit B; s 100.0 3.7E-67 1.3E-71 512.9 20.1 216 76-301 4-220 (220)
10 4emv_A DNA topoisomerase IV, B 100.0 3.3E-65 1.1E-69 500.4 17.9 217 75-301 9-226 (226)
11 3ttz_A DNA gyrase subunit B; p 100.0 7.4E-57 2.5E-61 433.9 16.5 197 77-303 2-198 (198)
12 3fv5_A DNA topoisomerase 4 sub 100.0 3.6E-56 1.2E-60 430.5 20.4 201 87-299 1-201 (201)
13 2q2e_B Type 2 DNA topoisomeras 100.0 5.8E-41 2E-45 370.8 4.8 303 81-443 12-334 (621)
14 3na3_A DNA mismatch repair pro 100.0 9.1E-29 3.1E-33 256.5 22.4 282 79-414 6-305 (348)
15 3h4l_A DNA mismatch repair pro 100.0 3.2E-28 1.1E-32 254.4 25.1 283 81-414 5-328 (367)
16 1b63_A MUTL; DNA mismatch repa 100.0 1.4E-27 4.9E-32 247.4 21.1 279 81-414 4-302 (333)
17 2zbk_B Type 2 DNA topoisomeras 99.9 1.2E-28 3.9E-33 269.1 3.9 280 80-412 5-310 (530)
18 1h7s_A PMS1 protein homolog 2; 99.9 3.3E-26 1.1E-30 239.6 20.2 284 80-414 13-333 (365)
19 3k9f_C DNA topoisomerase 4 sub 99.9 1.3E-27 4.4E-32 233.5 2.3 66 472-538 21-86 (268)
20 3nuh_B DNA gyrase subunit B; t 99.9 3.2E-27 1.1E-31 243.8 1.3 70 468-538 3-72 (420)
21 2xkj_E Topoisomerase IV; type 99.9 6E-26 2.1E-30 252.3 1.5 82 453-538 1-82 (767)
22 1mu5_A Type II DNA topoisomera 99.9 4.5E-20 1.5E-24 199.1 24.4 183 80-285 6-209 (471)
23 3qx3_A DNA topoisomerase 2-bet 99.7 8.9E-19 3.1E-23 193.5 2.8 53 482-538 34-94 (803)
24 3l4j_A DNA topoisomerase 2; to 99.6 1.2E-16 4.3E-21 176.2 -0.0 47 491-538 15-64 (757)
25 2xcs_B DNA gyrase subunit B, D 99.5 6.4E-15 2.2E-19 162.4 1.3 45 481-525 3-47 (692)
26 3t0h_A Heat shock protein HSP 99.3 4.5E-12 1.5E-16 124.2 11.4 158 107-285 33-215 (228)
27 3o0i_A HSP90AA1 protein; HSP90 99.3 8.1E-12 2.8E-16 124.0 11.5 160 108-285 62-243 (256)
28 1y4s_A Chaperone protein HTPG; 99.3 4.5E-11 1.5E-15 130.8 17.8 154 107-280 28-210 (559)
29 2ior_A Chaperone protein HTPG; 99.3 1.1E-11 3.7E-16 122.2 11.3 151 107-276 48-227 (235)
30 2ioq_A Chaperone protein HTPG; 99.2 1.4E-10 4.8E-15 128.4 18.3 154 107-280 28-210 (624)
31 2wer_A ATP-dependent molecular 99.1 2.2E-10 7.5E-15 111.6 12.7 160 108-286 28-211 (220)
32 1yc1_A HSP 86, heat shock prot 99.1 2E-10 6.8E-15 114.9 11.1 161 106-286 68-252 (264)
33 2gqp_A Endoplasmin; GRP94, HSP 99.1 4.9E-10 1.7E-14 110.3 13.1 164 107-286 33-221 (236)
34 2o1u_A Endoplasmin; GRP94, HSP 99.0 2E-09 6.8E-14 119.7 15.9 155 108-280 47-230 (666)
35 3peh_A Endoplasmin homolog; st 98.9 2.5E-08 8.5E-13 100.0 14.0 161 108-285 48-231 (281)
36 1qy5_A Endoplasmin; GRP94, NEC 98.8 8E-09 2.8E-13 103.4 10.0 163 108-286 30-217 (269)
37 2cg9_A ATP-dependent molecular 98.8 2.7E-08 9.1E-13 110.8 14.9 156 108-282 28-207 (677)
38 3nmq_A Heat shock protein HSP 98.8 1.9E-08 6.4E-13 98.8 10.7 159 108-286 41-223 (239)
39 3ied_A Heat shock protein; HSP 98.4 8.7E-07 3E-11 87.4 11.1 129 129-272 120-260 (272)
40 1th8_A Anti-sigma F factor; SP 98.2 8.8E-06 3E-10 72.4 10.4 84 105-208 38-125 (145)
41 3a0y_A Sensor protein; ATP-LID 98.0 2.2E-05 7.5E-10 69.5 9.0 76 104-201 45-123 (152)
42 1id0_A PHOQ histidine kinase; 97.9 5.2E-05 1.8E-09 67.3 10.3 78 103-202 41-121 (152)
43 3sl2_A Sensor histidine kinase 97.8 3.2E-05 1.1E-09 71.0 8.0 83 104-202 41-128 (177)
44 1ysr_A Sensor-type histidine k 97.8 4.7E-05 1.6E-09 67.7 8.5 79 104-202 44-125 (150)
45 3ehg_A Sensor kinase (YOCF pro 97.8 6.9E-05 2.4E-09 65.3 9.2 46 105-153 39-87 (128)
46 2e0a_A Pyruvate dehydrogenase 97.8 4.5E-05 1.5E-09 79.8 9.3 92 104-203 228-327 (394)
47 3zxo_A Redox sensor histidine 97.8 3.7E-05 1.3E-09 66.5 7.3 45 105-152 42-88 (129)
48 2q8g_A [pyruvate dehydrogenase 97.8 4.7E-05 1.6E-09 80.1 8.8 91 105-203 242-340 (407)
49 1bxd_A ENVZ(290-450), protein 97.7 3.7E-05 1.3E-09 69.3 6.3 81 103-203 44-127 (161)
50 1r62_A Nitrogen regulation pro 97.7 4.6E-05 1.6E-09 67.9 6.4 78 104-202 46-136 (160)
51 1gkz_A [3-methyl-2-oxobutanoat 97.7 8E-05 2.7E-09 77.7 8.7 92 104-203 236-350 (388)
52 2btz_A Pyruvate dehydrogenase 97.7 6E-05 2E-09 78.8 7.7 91 104-203 229-327 (394)
53 1y8o_A [pyruvate dehydrogenase 97.7 4E-05 1.4E-09 81.0 6.1 92 104-203 251-351 (419)
54 2c2a_A Sensor histidine kinase 97.6 9E-05 3.1E-09 72.0 7.9 85 103-201 135-223 (258)
55 3zxq_A Hypoxia sensor histidin 97.6 8.3E-05 2.8E-09 63.9 6.8 46 105-153 38-85 (124)
56 4ew8_A Sensor protein DIVL; si 97.6 0.00012 4.2E-09 71.1 8.0 76 105-202 154-232 (268)
57 3ehh_A Sensor kinase (YOCF pro 97.5 0.00014 4.9E-09 68.4 6.5 45 106-153 130-177 (218)
58 1i58_A Chemotaxis protein CHEA 97.4 0.00016 5.6E-09 66.9 6.2 48 106-153 47-107 (189)
59 3jz3_A Sensor protein QSEC; he 97.4 0.00013 4.4E-09 68.5 5.6 77 105-201 116-192 (222)
60 3a0r_A Sensor protein; four he 97.4 0.00012 4.2E-09 73.6 5.4 74 105-200 243-319 (349)
61 1b3q_A Protein (chemotaxis pro 97.4 0.00018 6.1E-09 75.1 6.3 48 106-153 106-166 (379)
62 3d36_A Sporulation kinase B; G 97.3 0.00039 1.3E-08 66.2 7.1 78 104-202 121-201 (244)
63 3ke6_A Protein RV1364C/MT1410; 96.9 0.0022 7.6E-08 67.2 9.4 83 106-219 297-384 (399)
64 4fpp_A Phosphotransferase; fou 96.6 0.0025 8.6E-08 62.0 6.0 75 106-200 146-223 (247)
65 1ixm_A SPO0B, protein (sporula 86.0 0.77 2.6E-05 43.1 5.0 41 113-153 115-161 (192)
66 2zbk_B Type 2 DNA topoisomeras 85.7 5.1 0.00018 43.4 12.0 99 330-444 350-457 (530)
67 2q2e_B Type 2 DNA topoisomeras 53.9 39 0.0013 37.2 9.2 102 330-443 353-464 (621)
68 3hqc_A Tensin-like C1 domain-c 35.0 30 0.001 31.3 3.7 48 97-147 19-70 (157)
69 1wvh_A Tensin, tensin1; beta s 31.0 46 0.0016 29.2 4.2 50 97-149 7-60 (134)
No 1
>3lnu_A Topoisomerase IV subunit B; PARE, ATP-binding, nucleotide-BI topoisomerase; 2.20A {Xanthomonas oryzae PV} PDB: 3lps_A*
Probab=100.00 E-value=6.3e-111 Score=885.47 Aligned_cols=386 Identities=34% Similarity=0.594 Sum_probs=320.3
Q ss_pred CCCCcccceeccchhhhhhCCCeeeccCCCCchhHHHHHHHHhhHhhhccCCCCeEEEEEecCCeEEEEECCCCccCCcc
Q 009294 75 KTYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLADNSVSVADNGRGIPIDLH 154 (538)
Q Consensus 75 ~~y~~~~i~~L~~lE~VrkRP~mYIGs~~~~gL~~lv~EivdNAiDe~~~g~~~~I~V~i~~dg~isV~DnGrGIP~~~h 154 (538)
++|++++||+|+|||||||||||||||+++ ||+|||||||||||+++|+|+.|+|+|+.||+|+|+|||||||+++|
T Consensus 22 ~~Y~a~~I~vL~glE~VRkRPgMYiGst~~---~hlv~EivdNsiDea~ag~~~~I~V~i~~dgsI~V~DnGrGIPv~~h 98 (408)
T 3lnu_A 22 TRYNAADIEVLSGLDPVKRRPGMYTDTARP---NHLAQEVIDNSVDEALAGHAKQIEVTLYKDGSCEVSDDGRGMPVDIH 98 (408)
T ss_dssp ------------CCHHHHHCGGGTSCTTST---HHHHHHHHHHHHHHHHTTSCCEEEEEECTTSCEEEEECSSCCCCSBC
T ss_pred CCcCHhHceeccccHHHhcCCccEECCCCc---chhhHHHHHHHHHHhhcCCCceEEEEEeCCCeEEEEEcCCCCCcccc
Confidence 469999999999999999999999999976 99999999999999999999999999999999999999999999999
Q ss_pred CCCCcchHHHhhhhcccCCCCCCCCCCeeeccccccchhhHHHhhcCeEEEEEEeCCEEEEEEEeCCcccccceeeecCC
Q 009294 155 PATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPV 234 (538)
Q Consensus 155 ~~~g~~~~e~v~t~lhagskf~~~~~~yk~sgG~~GvGls~vnalS~~~~V~t~~~g~~y~q~f~~G~~~~~~~~~~~~~ 234 (538)
|++|+|++|+|||+|||||||+++ .|++||||||||+++|||||++|+|+++|+|+.|+|+|++|+++.++..+. .
T Consensus 99 ~~~~~~~~e~i~t~lhaggKfd~~--~ykvSgGlhGvG~svVNALS~~l~v~v~rdGk~~~q~f~~G~~~~~l~~ig--~ 174 (408)
T 3lnu_A 99 PEEKIPGVELILTRLHAGGKFNNR--NYTFSGGLHGVGVSVVNALSTKVELFIKREGSEHRMEFRDGNAASKLEVVG--T 174 (408)
T ss_dssp TTTCSBHHHHHHHCC----------------------CHHHHHHTEEEEEEEEEETTEEEEEEEETTEECSCCEEEE--E
T ss_pred cccCCcchheEEEecccCCCcCCC--ceeecCCccccccceehhccCeEEEEEEECCEEEEEEECCCEECCCceEec--c
Confidence 999999999999999999999987 999999999999999999999999999999999999999999988775431 1
Q ss_pred CCCCCCCcEEEEEeCccccccccccCHHHHHHHHHHHHhhCCCcEEEEeeCCCCCCCCceeEEeecccHHHHHHHHcCCC
Q 009294 235 DSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDK 314 (538)
Q Consensus 235 ~~~~~~GT~V~F~PD~~~F~~~~~~~~~~i~~rl~elA~lnpgl~i~l~d~~~~~~~~~~~~f~~~~Gl~~yv~~l~~~~ 314 (538)
....++||+|+|+||+++|.+ ..|+++.|.+||+++|++||||+|+|+|++.+ ..+.|+|++||++||++++.++
T Consensus 175 ~~~~~~GT~V~F~PD~~iF~~-~~f~~~~l~~rlrelA~Ln~Gv~I~l~der~~----~~~~f~yegGi~~yv~~l~~~k 249 (408)
T 3lnu_A 175 VGKKNTGTRLRFWADPKYFDT-PKFNVRALRHLLRAKAVLCPGLTVKLHDEATG----EQDSWYFENGLRDYLKGEMAEH 249 (408)
T ss_dssp CCTTCCEEEEEEEECGGGSSC-SCCCHHHHHHHHHHHHHHSTTCEEEEEETTTC----CEEEEECSSSHHHHHHHHTTTS
T ss_pred CcCCCCCcEEEEEECHHHhCC-CCcCHHHHHHHHHHHHhhcCCCEEEEEeccCC----ceeEEEcCchHHHHHHHHhcCC
Confidence 212579999999999999964 57999999999999999999999999999864 3579999999999999999988
Q ss_pred CCCCCeeEEEEecce-eEEEEEEEeccCCCCceEEEeeCceeccCCccchHHHHHHHHHHHHHHHHhcCCCCCcCCCCCH
Q 009294 315 KPLHDVVGFRKDVDG-ITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSG 393 (538)
Q Consensus 315 ~~~~~~i~~~~~~~~-i~veval~~s~~~~~~~~~SFVN~I~T~~GGTHv~g~~~al~k~in~~~kk~~~~k~~~~~l~~ 393 (538)
+++++.+.+..+.++ +.+|||+||+ ++|+++++||||+|+|++||||++||++||+++||+|+++.+++|++ .++++
T Consensus 250 ~~~~~~~~~~~~~~~~~~ve~Al~~~-~~~~e~~~SFvN~I~T~~GGTH~~gfr~altr~in~y~~~~~l~kk~-~~l~~ 327 (408)
T 3lnu_A 250 EMLPADLFVGSLKKDTEIVDWAAGWV-PEGELVQESYVNLIPTAQHGTHVNGLRSGLTDALREFCDFRNLLPRG-VKLAP 327 (408)
T ss_dssp CCEEEEEEEEEEECSSCEEEEEEEEC-SSSCCCEEEEETTEECTTCBHHHHHHHHHHHHHHHHHHHHTTCCCTT-CCCCH
T ss_pred CcCCCCCeEeeEecCceeEEEEEEEc-CCCCeEEEEEeCCcCCCCCCcHHHHHHHHHHHHHHHHHHHhCcccCC-CCCCH
Confidence 777755555555567 8999999999 67999999999999999999999999999999999999998888865 89999
Q ss_pred HhHhccceEEEEEeecCCCCCCccccccCChhhhhhhhhHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009294 394 EHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLV 473 (538)
Q Consensus 394 ~dIregL~~~vsvki~nP~FegQTKekL~n~ev~~~v~~~v~~~l~~~l~~n~~~~~~I~~~~~~~~ka~~aakkar~~~ 473 (538)
+||||||++||||+++||+|+||||+||+|++++.+|++++.+.|..||++||++++.|++|++.+++||+ |||||++
T Consensus 328 ~DiregL~aviSvkv~~PqFegQTK~kL~n~ev~~~V~~~v~~~l~~~l~enp~~ak~i~~k~i~aa~aR~--rkare~~ 405 (408)
T 3lnu_A 328 EDVWDRVTFVLSLKMTDPQFSGQTKERLSSRQAAGFIEGAAHDAFSLYLNQNVEIGEKIAQIAIDRASARL--KTEKQIV 405 (408)
T ss_dssp HHHHTTEEEEEEEECSSCCEESTTSCEECCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTC----------
T ss_pred HHHhhCeEEEEEEEcCCCcccCcccccccCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH--HHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999996 8999999
Q ss_pred hhc
Q 009294 474 RQK 476 (538)
Q Consensus 474 ~~k 476 (538)
|||
T Consensus 406 rrK 408 (408)
T 3lnu_A 406 RKK 408 (408)
T ss_dssp ---
T ss_pred ccC
Confidence 876
No 2
>1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=100.00 E-value=2.1e-107 Score=860.39 Aligned_cols=387 Identities=44% Similarity=0.794 Sum_probs=364.5
Q ss_pred CCCCcccceeccchhhhhhCCCeeeccCCCC-chhHHHHHHHHhhHhhhccCCCCeEEEEEecCCeEEEEECCCCccCCc
Q 009294 75 KTYGSEQIQVLEGLEAVRKRPAMYIGSTGPR-GLHHLVYEILDNAVDEAQAGYASNIEVALLADNSVSVADNGRGIPIDL 153 (538)
Q Consensus 75 ~~y~~~~i~~L~~lE~VrkRP~mYIGs~~~~-gL~~lv~EivdNAiDe~~~g~~~~I~V~i~~dg~isV~DnGrGIP~~~ 153 (538)
.+|++++||+|+++|||||||||||||++.. ||+|+|+|||||||||+++|+|+.|.|+|+.||+|+|+|||||||++.
T Consensus 2 ~~y~~~~i~~L~gle~vrkRPgmYiGst~~~~gl~~lv~ElvdNsiDea~~g~a~~I~V~i~~~g~I~V~DnG~GIp~~~ 81 (391)
T 1ei1_A 2 NSSDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIHADNSVSVQDDGRGIPTGI 81 (391)
T ss_dssp CCCSGGGCEECCTTHHHHHCTHHHHCCSSSSHHHHHHHHHHHHHHHHHHHTTCCCEEEEEECTTSCEEEEECSSCCCCSB
T ss_pred CCCCHHHCEECchhHHHHcCCCeEECCCCCCcCHHHHHHHHHHhHHHHHhcCCCCEEEEEEeCCCEEEEEECCCCcccCc
Confidence 3699999999999999999999999999998 999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcchHHHhhhhcccCCCCCCCCCCeeeccccccchhhHHHhhcCeEEEEEEeCCEEEEEEEeCCcccccceeeecC
Q 009294 154 HPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLP 233 (538)
Q Consensus 154 h~~~g~~~~e~v~t~lhagskf~~~~~~yk~sgG~~GvGls~vnalS~~~~V~t~~~g~~y~q~f~~G~~~~~~~~~~~~ 233 (538)
||++|+|++|++|+++||||||+++ .|++||||||+|+++|||||++|+|+++++|+.|+|+|++|++..++..+
T Consensus 82 ~~~~~~~~~elv~~~lhagsKf~~~--~~~vSgGl~GvGls~vnalS~~l~v~~~r~g~~~~~~~~~G~~~~~l~~~--- 156 (391)
T 1ei1_A 82 HPEEGVSAAEVIMTVLHAGGKFDDN--SYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVT--- 156 (391)
T ss_dssp CTTTSSBHHHHHHHSTTEESCSSSS--SCSSCSCCSSCHHHHHHHTEEEEEEEEEETTEEEEEEEETTEESSCCEEE---
T ss_pred ccccCcchHHHhheeccccCCcCCC--cccccCCccccchHHHHHhcCeEEEEEEeCCcEEEEEEcCCcccccceec---
Confidence 9999999999999999999999986 99999999999999999999999999999999999999999988655432
Q ss_pred CCCCCCCCcEEEEEeCccccccccccCHHHHHHHHHHHHhhCCCcEEEEeeCCCCCCCCceeEEeecccHHHHHHHHcCC
Q 009294 234 VDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTD 313 (538)
Q Consensus 234 ~~~~~~~GT~V~F~PD~~~F~~~~~~~~~~i~~rl~elA~lnpgl~i~l~d~~~~~~~~~~~~f~~~~Gl~~yv~~l~~~ 313 (538)
+...++||+|+|+||+++|.+...++++.|.+||+++|++||||+|+|+|++.+ .++.|+|++||.+||.+++.+
T Consensus 157 -~~~~~~GT~V~f~Pd~~~F~~~~~~e~~~l~~rlr~lA~lnpgv~i~l~d~~~~----~~~~f~~~gGl~~~v~~l~~~ 231 (391)
T 1ei1_A 157 -GETEKTGTMVRFWPSLETFTNVTEFEYEILAKRLRELSFLDSGVSIRLRDKRDG----KEDHFHYEGGIKAFVEYLNKN 231 (391)
T ss_dssp -EECSCCEEEEEEEECTTTCCSCCSCCHHHHHHHHHHHHHHSTTCEEEEEETTTC----CEEEECCCSHHHHHHHHHHHT
T ss_pred -cCcCCCccEEEEEEChhhhCCccccCHHHHHHHHHHhcccCCCcEEEEEcCCCc----ceEEEEcCchHHHHHHHHcCC
Confidence 123579999999999999954157999999999999999999999999999843 357899999999999999988
Q ss_pred CCCCC-CeeEEEEecceeEEEEEEEeccCCCCceEEEeeCceeccCCccchHHHHHHHHHHHHHHHHhcCCCCCcCCCCC
Q 009294 314 KKPLH-DVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 392 (538)
Q Consensus 314 ~~~~~-~~i~~~~~~~~i~veval~~s~~~~~~~~~SFVN~I~T~~GGTHv~g~~~al~k~in~~~kk~~~~k~~~~~l~ 392 (538)
+++++ +++++..+.+++.|++|++|+ ++|.+.++||||+|+|++||||++||+++|+++||+|+++.+++|+++.+++
T Consensus 232 ~~~~~~~~i~~~~~~~~i~veva~~~~-~~~~e~~~sFvN~i~t~~GGTH~~gfr~alt~~i~~~~~~~~l~k~~~~~~~ 310 (391)
T 1ei1_A 232 KTPIHPNIFYFSTEKDGIGVEVALQWN-DGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSAT 310 (391)
T ss_dssp SCBSSSCCEEEEEEETTEEEEEEEEEB-SSCCEEEEEEETTEECTTCBHHHHHHHHHHHHHHHHHHHHTTHHHHHCCCCC
T ss_pred CcccccccEEEEEecCCEEEEEEEEcc-CCCCeeEEEEEcceecCCCCcHHHHHHHHHHHHHHHHHHHhCcccccCCccC
Confidence 77777 678888888899999999998 8898999999999999999999999999999999999999888777678899
Q ss_pred HHhHhccceEEEEEeecCCCCCCccccccCChhhhhhhhhHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009294 393 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDL 472 (538)
Q Consensus 393 ~~dIregL~~~vsvki~nP~FegQTKekL~n~ev~~~v~~~v~~~l~~~l~~n~~~~~~I~~~~~~~~ka~~aakkar~~ 472 (538)
++||||||++||||+++||+|+||||+||+|++++.+|++++.+.|..||++||++++.|++|++.+++||+|||||||+
T Consensus 311 ~~dvregl~avisvki~~P~FegQTK~kL~~~e~~~~v~~~v~~~l~~~l~~np~~a~~i~~k~~~aa~ar~aa~kare~ 390 (391)
T 1ei1_A 311 GDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREM 390 (391)
T ss_dssp HHHHTTTEEEEEEEECSSCCBSSTTCCSBCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhhccEEEEEEecCCCCcCCcccccccCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999985
No 3
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.1e-110 Score=972.82 Aligned_cols=435 Identities=23% Similarity=0.337 Sum_probs=348.9
Q ss_pred CCCCcccceeccchhhhhhCCCeeeccCCCC-----------------------chhHHHHHHHHhhHhhhccCC-CCeE
Q 009294 75 KTYGSEQIQVLEGLEAVRKRPAMYIGSTGPR-----------------------GLHHLVYEILDNAVDEAQAGY-ASNI 130 (538)
Q Consensus 75 ~~y~~~~i~~L~~lE~VrkRP~mYIGs~~~~-----------------------gL~~lv~EivdNAiDe~~~g~-~~~I 130 (538)
.+|.+++||+|+||||||||||||||||+.. |||||||||||||+||+++|+ |+.|
T Consensus 5 ~~~~~~~yq~L~~LE~VrkRPgMYIGst~~~~~~~~v~~~~~~~~~~~~vt~v~GL~hl~~EildNsiDea~ag~~~~~I 84 (1177)
T 4gfh_A 5 PVSASDKYQKISQLEHILKRPDTYIGSVETQEQLQWIYDEETDCMIEKNVTIVPGLFKIFDEILVNAADNKVRDPSMKRI 84 (1177)
T ss_dssp --CHHHHSEECCHHHHHHHCGGGTTCCCSCEEEEEEEEETTTTEEEEEEEEECHHHHHHHHHHHHHHHHHHHHCTTCCEE
T ss_pred CCchhhcccccccchhhhcCCCCccccCCCCCcceeeeeccccccccccccccceeeeEeeEEEEChHhHHhhCCCCCeE
Confidence 4578889999999999999999999999865 999999999999999999997 6899
Q ss_pred EEEEe-cCCeEEEEECCCCccCCccCCCCcchHHHhhhhcccCCCCCCCCCCeeeccccccchhhHHHhhcCeEEEEEE-
Q 009294 131 EVALL-ADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVW- 208 (538)
Q Consensus 131 ~V~i~-~dg~isV~DnGrGIP~~~h~~~g~~~~e~v~t~lhagskf~~~~~~yk~sgG~~GvGls~vnalS~~~~V~t~- 208 (538)
+|+|+ +||+|+|+|||||||++.||++|+|++|+|||+|||||||+++ .|++|||+||||+|||||||++|.|+|+
T Consensus 85 ~V~i~~~d~sisV~DnGRGIPvd~h~~~~~~~~Evv~t~LhAGgKFd~~--~ykvSGGLHGVG~svVNALS~~~~vev~~ 162 (1177)
T 4gfh_A 85 DVNIHAEEHTIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTSSNYDDD--EKKVTGGRNGYGAKLCNIFSTEFILETAD 162 (1177)
T ss_dssp EEEEETTTTEEEEEECSSCCCCSBCTTTCSBHHHHHHHSSSEESCCCCS--SCCCCSCCSSCHHHHHHHTEEEEEEEEEE
T ss_pred EEEEECCCCEEEEEecCCcccccccCCCCCEeeeeeccccccccCcCCC--CCeEeccCCChhhhHHhhcCCceEEEEEE
Confidence 99999 5999999999999999999999999999999999999999988 9999999999999999999999999885
Q ss_pred -eCCEEEEEEEeCCcccccceeeecCCCCCCCCCcEEEEEeCccccccccccCHHHHHHHHHHHHhhC---CCcEEEEee
Q 009294 209 -RDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLN---PKLTIALRK 284 (538)
Q Consensus 209 -~~g~~y~q~f~~G~~~~~~~~~~~~~~~~~~~GT~V~F~PD~~~F~~~~~~~~~~i~~rl~elA~ln---pgl~i~l~d 284 (538)
|+|+.|.|+|++|+++.++..+ .....+++||+|+|+||+++|.+. .|+++.+..|++++|++| +++.+.+++
T Consensus 163 ~r~Gk~y~q~f~~g~~~~~~~~i--~~~~~~~tGT~V~F~PD~~iF~~~-~~~~d~l~~~~r~~~~l~~~~~~~~~~~~g 239 (1177)
T 4gfh_A 163 LNVGQKYVQKWENNMSICHPPKI--TSYKKGPSYTKVTFKPDLTRFGMK-ELDNDILGVMRRRVYDINGSVRDINVYLNG 239 (1177)
T ss_dssp TTTTEEEEEEEETTTTEECCCEE--EECCSSCCCEEEEEEECHHHHTCS-SCCHHHHHHHHHHHHHHHHHSSSCEEEESS
T ss_pred EcCCEEEEEEEECCcccCCCCee--ecCCCCCCceEEEEEeCHHhcCCc-EeCHHHHHHHHHHHHHhcCCCceEEEEecC
Confidence 7899999999999998765433 223445789999999999999864 699999988888888876 557788888
Q ss_pred CCCCCCCCceeEEeecccHHHHHHHHcCCCCCCC--------CeeEEEEecceeEEEEEEEeccCCCCceEEEeeCceec
Q 009294 285 EDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH--------DVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRT 356 (538)
Q Consensus 285 ~~~~~~~~~~~~f~~~~Gl~~yv~~l~~~~~~~~--------~~i~~~~~~~~i~veval~~s~~~~~~~~~SFVN~I~T 356 (538)
++. ..++|++|+.+|+..++..+...+ +...+..+..+.+||||++|+ +++ .+++||||+|+|
T Consensus 240 ~~~-------~~~~f~~gi~~y~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~eva~~~~-d~~-~~~~SFvN~I~T 310 (1177)
T 4gfh_A 240 KSL-------KIRNFKNYVELYLKSLEKKRQLDNGEDGAAKSDIPTILYERINNRWEVAFAVS-DIS-FQQISFVNSIAT 310 (1177)
T ss_dssp CBC-------CCCSHHHHHGGGTTTC-----------------CCSCEEEEEETTEEEEEEEC-SSS-CEEEEEESSCEE
T ss_pred Cee-------EEeeccchhhhhhhhhccceeccccccccccCCCceEEEEeccceEEEeeccc-CCc-ceeeeeeeeeec
Confidence 763 467788899999887766443222 112233455677899999998 554 457899999999
Q ss_pred cCCccchHHHHHHHHHHHHHHHHhcCCCCCcCCCCCHHhHhccceEEEEEeecCCCCCCccccccCChhhhhhhhhHHH-
Q 009294 357 IDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQ- 435 (538)
Q Consensus 357 ~~GGTHv~g~~~al~k~in~~~kk~~~~k~~~~~l~~~dIregL~~~vsvki~nP~FegQTKekL~n~ev~~~v~~~v~- 435 (538)
++||||++||+++|+++||+|+++++. .+++++|||+||++||||+++||+|+||||++|+|+.........+.
T Consensus 311 ~~GGTHv~gfr~altr~in~~~~k~~~-----~~~~~~DIregl~avISvki~~PqFegQTK~kL~s~~~~~~~~~~~~~ 385 (1177)
T 4gfh_A 311 TMGGTHVNYITDQIVKKISEILKKKKK-----KSVKSFQIKNNMFIFINCLIENPAFTSQTKEQLTTRVKDFGSRCEIPL 385 (1177)
T ss_dssp TTEEHHHHHHHHHHHHHHHHHHHHHSS-----SCCCHHHHHTTEEEEEEECCSSCCBSSTTCCEECCCGGGSSSCCCCCH
T ss_pred CCCchHHHHHHHHHHHHHHHHhhhhcc-----ccCCHHHHhCCceEEEEeeeccCccccchhhhhcCchhcceeeccchH
Confidence 999999999999999999999877543 46999999999999999999999999999999999865544332222
Q ss_pred HHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCCCCC---CCCCCceEEEEEeCCCCccc
Q 009294 436 EYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCS---STTPEESEIFIVEGDSAGGS 512 (538)
Q Consensus 436 ~~l~~~l~~n~~~~~~I~~~~~~~~ka~~aakkar~~~~~k~~~~~~~lpgKL~Dc~---~~~~~~~eL~lvEGDSA~Gs 512 (538)
+.+..++ +.. |+++++.+++++++++++++..++|+.+ ..+| ||+||+ ++|+++||||||||||||||
T Consensus 386 ~~~~~~~--~~~----i~~~~~~~a~~~~~~~~~k~~~~~k~~~--~~~~-KL~d~~~~~skd~~~~ELfiVEGDSAgGs 456 (1177)
T 4gfh_A 386 EYINKIM--KTD----LATRMFEIADANEENALKKSDGTRKSRI--TNYP-KLEDANKAGTKEGYKCTLVLTEGDSALSL 456 (1177)
T ss_dssp HHHHHHT--TSH----HHHHHHHHHTTCC------------CCC--CSCT-TCBCCTTTTTTTTTTCEEEEEEHHHHHHH
T ss_pred HHhhhhh--hHH----HHHHHHHHHHHHHHHHHHhhhhhcchhh--cccc-ccccccccCCCCccceEEEEecCCchhhh
Confidence 2222222 223 4444444445444444444444444433 2344 999987 68999999999999999999
Q ss_pred ccccC---CCCceEeeccCccccccccCC
Q 009294 513 AKQGR---DRRFQVIINPLQESIFAFASA 538 (538)
Q Consensus 513 ak~gR---dr~~qail~PLrGKiLNv~ka 538 (538)
||+|| +|+||||| |||||||||+||
T Consensus 457 Ak~Grak~~Rd~QAIl-PLRGKiLNv~ka 484 (1177)
T 4gfh_A 457 AVAGLAVVGRDYYGCY-PLRGKMLNVREA 484 (1177)
T ss_dssp HHHHHHHHCSTTEEEE-EECSSCCCCTTC
T ss_pred HhhcccccCcccEEec-ccCceechhhhh
Confidence 99998 88899999 999999999997
No 4
>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=100.00 E-value=2.7e-104 Score=836.95 Aligned_cols=383 Identities=34% Similarity=0.576 Sum_probs=354.8
Q ss_pred CCCCcccceeccchhhhhhCCCeeeccCCCCchhHHHHHHHHhhHhhhccCCCCeEEEEEecCCeEEEEECCCCccCCcc
Q 009294 75 KTYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLADNSVSVADNGRGIPIDLH 154 (538)
Q Consensus 75 ~~y~~~~i~~L~~lE~VrkRP~mYIGs~~~~gL~~lv~EivdNAiDe~~~g~~~~I~V~i~~dg~isV~DnGrGIP~~~h 154 (538)
++|++++||+|+++|||||||||||||++. ||+|+|||||||||+++|+|+.|.|+|+.+|+|+|+|||+|||++.|
T Consensus 3 ~~y~~~~i~~L~gle~vr~RPgmYiGs~~~---~~lv~ElvdNsiD~a~~g~a~~I~V~i~~~g~I~V~DnG~GIp~~~~ 79 (390)
T 1s16_A 3 QTYNADAIEVLTGLEPVRRRPGMYTDTTRP---NHLGQEVIDNSVDEALAGHAKRVDVILHADQSLEVIDDGRGMPVDIH 79 (390)
T ss_dssp -CCSGGGCEECCTTHHHHHCGGGTSCTTST---HHHHHHHHHHHHHHHHTTCCSEEEEEECTTSCEEEEECSSCCCCSBC
T ss_pred CCCCHHHcEEcchhHHHhhCCceeecCCcH---HHHHHHHHHHHHHHHhcCCCCEEEEEEecCCEEEEEECCCCcCcccc
Confidence 469999999999999999999999999998 99999999999999999999999999999999999999999999999
Q ss_pred CCCCcchHHHhhhhcccCCCCCCCCCCeeeccccccchhhHHHhhcCeEEEEEEeCCEEEEEEEeCCcccccceeeecCC
Q 009294 155 PATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPV 234 (538)
Q Consensus 155 ~~~g~~~~e~v~t~lhagskf~~~~~~yk~sgG~~GvGls~vnalS~~~~V~t~~~g~~y~q~f~~G~~~~~~~~~~~~~ 234 (538)
|++|+|++|++|+++||||||+++ .|++||||||+|+++|||||++|+|+++++|+.|+|+|++|+++.++.++. .
T Consensus 80 ~~~~~~~~e~v~~~lhagsKf~~~--~~~~sgGl~GvGls~vnalS~~l~v~~~r~g~~~~~~~~~G~~~~~~~~~g--~ 155 (390)
T 1s16_A 80 PEEGVPAVELILCRLHAGGKFSNK--NYQFSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVG--T 155 (390)
T ss_dssp TTTCSBHHHHHHHCTTEESCSSSS--SCSSCSCCSSCHHHHHHHTEEEEEEEEEETTEEEEEEEETTEEEEEEEEEE--E
T ss_pred cccCcchhhheeeeecccCCcCCC--cccccCCccccchHHHHHhhcccEEEEEECCcEEEEEEeCCcccccceecc--c
Confidence 999999999999999999999986 999999999999999999999999999999999999999999876554331 0
Q ss_pred CCCCCCCcEEEEEeCccccccccccCHHHHHHHHHHHHhhCCCcEEEEeeCCCCCCCCceeEEeecccHHHHHHHHcCCC
Q 009294 235 DSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDK 314 (538)
Q Consensus 235 ~~~~~~GT~V~F~PD~~~F~~~~~~~~~~i~~rl~elA~lnpgl~i~l~d~~~~~~~~~~~~f~~~~Gl~~yv~~l~~~~ 314 (538)
....++||+|+|+||+++|. +..++++.|.+||+++|++||||+|+|++++.+ .++.|+|++||.+||.+++.++
T Consensus 156 ~~~~~~GT~V~f~Pd~~~F~-~~~~e~~~l~~rl~~lA~lnpgv~i~l~d~~~~----~~~~f~~~gGl~~~v~~l~~~~ 230 (390)
T 1s16_A 156 CGKRNTGTSVHFWPDETFFD-SPRFSVSRLTHVLKAKAVLCPGVEITFKDEINN----TEQRWCYQDGLNDYLAEAVNGL 230 (390)
T ss_dssp CCTTCCEEEEEEEECGGGSS-CCSCCHHHHHHHHHHHHHHSTTCEEEEEETTTT----EEEEECCSSCHHHHHHHHHTTS
T ss_pred ccCCCCceEEEEEECccccC-cccccHHHHHHHHHHHHhcCCCcEEEEEeCCCc----eeEEEEcCCcHHHHHHHHhCCC
Confidence 11136899999999999995 457999999999999999999999999999843 3578999999999999999877
Q ss_pred CCCC-CeeEEEEecceeEEEEEEEe-ccCCCCceEEEeeCceeccCCccchHHHHHHHHHHHHHHHHhcCCCCCcCCCCC
Q 009294 315 KPLH-DVVGFRKDVDGITIDLALQW-CSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 392 (538)
Q Consensus 315 ~~~~-~~i~~~~~~~~i~veval~~-s~~~~~~~~~SFVN~I~T~~GGTHv~g~~~al~k~in~~~kk~~~~k~~~~~l~ 392 (538)
++++ +++++..+.+++.|++|++| + ++|.+.++||||+|+|++||||++||+++|+++||+|+++++++| ++.+++
T Consensus 231 ~~~~~~~i~~~~~~~~~~ve~a~~~~~-~~~~~~~~sFvN~i~t~~GGTH~~gfr~alt~~i~~~~~~~~~~k-~~~~l~ 308 (390)
T 1s16_A 231 PTLPEKPFIGNFAGDTEAVDWALLWLP-EGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILP-RGVKLS 308 (390)
T ss_dssp CCEEEEEEEEEEECSSEEEEEEEEECT-TCCCCCEEEEETTEECTTCBHHHHHHHHHHHHHHHHHHHHTTCSC-TTCCCC
T ss_pred cccCCCcEEEEEeeCCEEEEEEEEecc-CCCCceEEEEECCEecCCCCCHHHHHHHHHHHHHHHHHHHhCcCc-cCCccC
Confidence 7666 57888888889999999999 6 788899999999999999999999999999999999999999888 678899
Q ss_pred HHhHhccceEEEEEeecCCCCCCccccccCChhhhhhhhhHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009294 393 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARD 471 (538)
Q Consensus 393 ~~dIregL~~~vsvki~nP~FegQTKekL~n~ev~~~v~~~v~~~l~~~l~~n~~~~~~I~~~~~~~~ka~~aakkar~ 471 (538)
++||||||++||||+++||+|+||||++|+|++++.+|++++.+.|..||++||++++.|++|++.+++||+||||||+
T Consensus 309 ~~dvregl~avisvki~~P~FegQTK~kL~~~e~~~~v~~~v~~~l~~~l~~np~~a~~i~~k~~~aa~aR~aa~kare 387 (390)
T 1s16_A 309 AEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVV 387 (390)
T ss_dssp HHHHHTTEEEEEEEEESSCCBSSTTCCCBCCTHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHhhccEEEEEeecCCCCccccccchhcChhHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999998
No 5
>1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex, isomerase; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2
Probab=100.00 E-value=9.1e-98 Score=788.02 Aligned_cols=386 Identities=43% Similarity=0.688 Sum_probs=358.6
Q ss_pred CCCcccceeccchhhhhhCCCeeeccCCCCchhHHHHHHHHhhHhhhccCCCCeEEEEEecCCeEEEEECCCCccCCccC
Q 009294 76 TYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLADNSVSVADNGRGIPIDLHP 155 (538)
Q Consensus 76 ~y~~~~i~~L~~lE~VrkRP~mYIGs~~~~gL~~lv~EivdNAiDe~~~g~~~~I~V~i~~dg~isV~DnGrGIP~~~h~ 155 (538)
+|++++||+|+++||||+||+|||||++.+|++++|+|+|+||+||+++++++.|.|+|+.+|.|+|+|||+|||++.|+
T Consensus 2 ~y~~~~i~~l~~le~vr~rpgmyiGs~~~~g~~~~v~Elv~N~iD~a~~~~~~~I~V~i~~~~~i~V~DnG~GIp~~~~~ 81 (390)
T 1kij_A 2 SYDASAIRVLKGLEGVRHRPAMYIGGTGVEGYHHLFKEILDNAVDEALAGYATEILVRLNEDGSLTVEDNGRGIPVDLMP 81 (390)
T ss_dssp -----CCEECCTTHHHHHCTHHHHSCSSHHHHHHHHHHHHHHHHHHHHTTSCCEEEEEECTTSCEEEEECSSCCCCSEET
T ss_pred CCCHHHCEEcchhHHHhcCCCcEEccCCcchHHHHHHHHHHHHHHHhhhCCCCEEEEEEEcCCEEEEEEcCCCCCHHHhh
Confidence 69999999999999999999999999999999999999999999999999999999999988999999999999999999
Q ss_pred CCCcchHHHhhhhcccCCCCCCCCCCeeeccccccchhhHHHhhcCeEEEEEEeCCEEEEEEEeCCcccccceeeecCCC
Q 009294 156 ATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVD 235 (538)
Q Consensus 156 ~~g~~~~e~v~t~lhagskf~~~~~~yk~sgG~~GvGls~vnalS~~~~V~t~~~g~~y~q~f~~G~~~~~~~~~~~~~~ 235 (538)
.+|+|++|++|+++|+|+||+++ .|++++|+||+|+++||++|++++|+++++|+.|.|+|++|++..++.++. .
T Consensus 82 ~~~~~~~e~if~~~~~~~kf~~~--~~~~s~G~~G~Gls~v~als~~~~v~t~~~g~~~~~~~~~G~~~~~~~~~~---~ 156 (390)
T 1kij_A 82 EEGKPAVEVIYNTLHSGGKFEQG--AYKVSGGLHGVGASVVNALSEWTVVEVFREGKHHRIAFSRGEVTEPLRVVG---E 156 (390)
T ss_dssp TTTEEHHHHHHHSSCEESGGGGS--SCCCCSCSSTTSHHHHHHTEEEEEEEEEETTEEEEEEEETTEEEEEEEEEE---E
T ss_pred hccccchhhheeeeeecccccCc--cccccCCCCCcceeeecccccceEEEEecCCcEEEEEEcCCcccccceeec---c
Confidence 99999999999999999999876 889999999999999999999999999999999999999999876554331 1
Q ss_pred CC-CCCCcEEEEEeCccccccccccCHHHHHHHHHHHHhhCCCcEEEEeeCCCCCCCCceeEEeecccHHHHHHHHcCCC
Q 009294 236 SK-DRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDK 314 (538)
Q Consensus 236 ~~-~~~GT~V~F~PD~~~F~~~~~~~~~~i~~rl~elA~lnpgl~i~l~d~~~~~~~~~~~~f~~~~Gl~~yv~~l~~~~ 314 (538)
.. .++||+|+|+||+++|. +..++++.|.+||+++|++||+++|+|++++.+ .++.|+|++||.+||.+++.++
T Consensus 157 ~~~~~~GT~V~f~Pd~~~F~-~~~~~~~~l~~rl~~~A~lnpgv~i~l~d~~~~----~~~~f~~~~Gl~~~v~~l~~~~ 231 (390)
T 1kij_A 157 APRGKTGTRVTFKPDPEIFG-NLRFDPSKIRARLREVAYLVAGLKLVFQDRQHG----KEEVFLDKGGVASFAKALAEGE 231 (390)
T ss_dssp CGGGCCEEEEEEEECHHHHT-TCCCCHHHHHHHHHHHHHHTTTCEEEEEEGGGT----EEEEECCTTHHHHHHHHHTTTS
T ss_pred ccCCCCCcEEEEEEChHHhC-CccccHHHHHHHHHHhcCcCCCcEEEEEeCCCc----ceEEEEcCCcHHHHHHHHhCCC
Confidence 22 57999999999999995 457999999999999999999999999999842 3578999999999999999887
Q ss_pred CCCC-CeeEEEEecceeEEEEEEEeccCCCCceEEEeeCceeccCCccchHHHHHHHHHHHHHHHHhcCCCCCcCCCCCH
Q 009294 315 KPLH-DVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSG 393 (538)
Q Consensus 315 ~~~~-~~i~~~~~~~~i~veval~~s~~~~~~~~~SFVN~I~T~~GGTHv~g~~~al~k~in~~~kk~~~~k~~~~~l~~ 393 (538)
++++ +++++..+.+++.|+++++|+ ++|.++++||||+|+|++||||++||+++|++++|+|++++++.|+++.++++
T Consensus 232 ~~~~~~~i~~~~~~~~i~ve~a~~~~-~~~~~~~~sFvN~i~t~~GGTH~~g~~~alt~~i~~~~~~~~l~k~~~~~l~~ 310 (390)
T 1kij_A 232 DLLYEKPFLIRGTHGEVEVEVGFLHT-QGYNAEILTYANMIPTRDGGTHLTAFKSAYSRALNQYAKKAGLNKEKGPQPTG 310 (390)
T ss_dssp CBSCSSCEEEEEEETTEEEEEEEEEB-SSSCCEEEEEETTEECTTCBHHHHHHHHHHHHHHHHHHHHTTCCCSSSCCCCT
T ss_pred CcCCCCcEEEEeecCCeEEEEEEEec-CCCCceEEEEEcCeeeCCCCchhHHHHHHHHHHHHHHHHHhCccccccCCcCH
Confidence 7777 678888888899999999998 78889999999999999999999999999999999999999988887789999
Q ss_pred HhHhccceEEEEEeecCCCCCCccccccCChhhhhhhhhHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009294 394 EHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDL 472 (538)
Q Consensus 394 ~dIregL~~~vsvki~nP~FegQTKekL~n~ev~~~v~~~v~~~l~~~l~~n~~~~~~I~~~~~~~~ka~~aakkar~~ 472 (538)
+|||+||++||||+++||+|+||||++|+|++++.+|++++.+.|..||++||++++.|++|++.+++||+||||||++
T Consensus 311 ~dvregl~avisvki~~P~FegQTK~kL~~~e~~~~v~~~v~~~l~~~l~~np~~a~~i~~k~~~~~~aR~aa~kare~ 389 (390)
T 1kij_A 311 DDLLEGLYAVVSVKLPNPQFEGQTKGKLLNPEAGTAVGQVVYERLLEILEENPRIAKAVYEKALRAAQAREAARKAREL 389 (390)
T ss_dssp TTTTTTEEEEEEEECSSCCBCSTTCCSBCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhcEEEEEeecCCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999986
No 6
>1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A*
Probab=100.00 E-value=9.1e-96 Score=775.29 Aligned_cols=362 Identities=22% Similarity=0.322 Sum_probs=302.3
Q ss_pred CCCCCcccceeccchhhhhhCCCeeeccCCC-----------------------CchhHHHHHHHHhhHhhhc-cCCCCe
Q 009294 74 SKTYGSEQIQVLEGLEAVRKRPAMYIGSTGP-----------------------RGLHHLVYEILDNAVDEAQ-AGYASN 129 (538)
Q Consensus 74 ~~~y~~~~i~~L~~lE~VrkRP~mYIGs~~~-----------------------~gL~~lv~EivdNAiDe~~-~g~~~~ 129 (538)
..+..+++||+|++||||||||||||||++. +||||+||||||||+||++ +|+|+.
T Consensus 9 ~~~~~e~~~~~L~glE~VrkRPgMYIGst~~~~~~~~v~e~~~~~~~~~~v~~~~GL~~lv~EivdNaiDe~~~~g~~~~ 88 (418)
T 1pvg_A 9 EPVSASDKYQKISQLEHILKRPDTYIGSVETQEQLQWIYDEETDCMIEKNVTIVPGLFKIFDEILVNAADNKVRDPSMKR 88 (418)
T ss_dssp ---CHHHHSEECCHHHHHHHCCHHHHCCSSCEEEEEEEEETTTTEEEEEEEEECHHHHHHHHHHHHHHHHHHHHCTTCCE
T ss_pred cccchhhheeecchhHHHhhCCCceEcccCCCcceeeeeeccccccccccccccchHHHHHHHHHhCHHHHHHhcCCCCE
Confidence 4456778999999999999999999999998 8999999999999999996 599999
Q ss_pred EEEEEecC-CeEEEEECCCCccCCccCCCCcchHHHhhhhcccCCCCCCCCCCeeeccccccchhhHHHhhcCeEEEEEE
Q 009294 130 IEVALLAD-NSVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVW 208 (538)
Q Consensus 130 I~V~i~~d-g~isV~DnGrGIP~~~h~~~g~~~~e~v~t~lhagskf~~~~~~yk~sgG~~GvGls~vnalS~~~~V~t~ 208 (538)
|.|+|+.| |+|+|+|||||||++.||++|+|++|+|||+|||||||+++ .|++|||+||||+|+|||||+||+|+++
T Consensus 89 I~V~i~~d~~sI~V~DnGrGIPv~~h~~~g~~~~E~v~t~LhaGgKfd~~--~ykvSGGLhGVG~SvVNALS~~l~V~v~ 166 (418)
T 1pvg_A 89 IDVNIHAEEHTIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTSSNYDDD--EKKVTGGRNGYGAKLCNIFSTEFILETA 166 (418)
T ss_dssp EEEEEETTTTEEEEEEESSCCCCSBCTTTCSBHHHHHHHSSSEESCCCTT--SCCCCSCCSSCHHHHHHHTEEEEEEEEE
T ss_pred EEEEEECCCCEEEEEECCCcccCcccccCCcccceEEEEEEecccccCCC--ceeccCCccceeeeeeeeccceEEEEEE
Confidence 99999988 59999999999999999999999999999999999999987 9999999999999999999999999999
Q ss_pred --eCCEEEEEEEeCCc--ccccceeeecCCCCCCCCCcEEEEEeCccccccccccCHHH---HHHHHHHHHhhCCCcEEE
Q 009294 209 --RDGMEYHQKYSRGK--PVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNT---IAGRIRELAFLNPKLTIA 281 (538)
Q Consensus 209 --~~g~~y~q~f~~G~--~~~~~~~~~~~~~~~~~~GT~V~F~PD~~~F~~~~~~~~~~---i~~rl~elA~lnpgl~i~ 281 (538)
|+|+.|+|+|++|+ +..+ . + ......++||+|+||||+++|.+ ..|+++. |.+||+++|+|||||+|+
T Consensus 167 r~rdGk~y~q~f~~G~~~~~~p-~-i--~~~~~~~tGT~V~F~PD~~iF~~-~~f~~d~l~~l~~RlrelA~Ln~Gl~I~ 241 (418)
T 1pvg_A 167 DLNVGQKYVQKWENNMSICHPP-K-I--TSYKKGPSYTKVTFKPDLTRFGM-KELDNDILGVMRRRVYDINGSVRDINVY 241 (418)
T ss_dssp ETTTTEEEEEEEETTTTEECCC-E-E--EECCSSCCEEEEEEEECGGGGTC-SSCCHHHHHHHHHHHHHHHHHSTTCEEE
T ss_pred ECCCCcEEEEEEEcCCCccCCC-e-e--cccCCCCCceEEEEEEChHHcCC-cccCHHHHHHHHHHHHHHHhcCCCCEEE
Confidence 48999999999985 5443 1 2 11122469999999999999975 4699998 689999999999999999
Q ss_pred EeeCCCCCCCCceeEEeecccHHHHHHH----HcCCCC---------CCC-CeeEEEEecceeEEEEEEEeccCCCCceE
Q 009294 282 LRKEDSDPEKNQYNEYFFAGGLEEYVQW----LNTDKK---------PLH-DVVGFRKDVDGITIDLALQWCSDAYSDTM 347 (538)
Q Consensus 282 l~d~~~~~~~~~~~~f~~~~Gl~~yv~~----l~~~~~---------~~~-~~i~~~~~~~~i~veval~~s~~~~~~~~ 347 (538)
|+|++.+ .+|+.+|+++ ++.+++ +++ +++++..+. .+||||++|+ +++ +++
T Consensus 242 l~der~~-----------~~g~~~~v~~y~~~l~~~k~~~~~~~~~~~~~~~~i~~~~~~--~~vevA~~~~-~~~-~~~ 306 (418)
T 1pvg_A 242 LNGKSLK-----------IRNFKNYVELYLKSLEKKRQLDNGEDGAAKSDIPTILYERIN--NRWEVAFAVS-DIS-FQQ 306 (418)
T ss_dssp ETTEECC-----------CCSHHHHHHTTTTTC-----------------CCSCEEEEEE--TTEEEEEEEC-SSS-CEE
T ss_pred Eeccccc-----------cccHHHHHHHHHHhhhcccccccccccccCCCCCCEEEEEec--ceEEEEEEEc-CCC-ceE
Confidence 9998842 1478888875 344444 455 567776653 3689999998 565 679
Q ss_pred EEeeCceeccCCccchHHHHHHHHHHHHHHHHhcCCCCCcCCCCCHHhHhccceEEEEEeecCCCCCCccccccCChhhh
Q 009294 348 LGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVR 427 (538)
Q Consensus 348 ~SFVN~I~T~~GGTHv~g~~~al~k~in~~~kk~~~~k~~~~~l~~~dIregL~~~vsvki~nP~FegQTKekL~n~ev~ 427 (538)
+||||+|+|++||||++||+++|++++++|++|++ +.+++++||||||++||||+++||+|+||||+||+|++..
T Consensus 307 ~SFvN~I~T~~GGTH~~g~~~al~~~i~~~~~k~~-----~~~l~g~Dvregl~aviSvkv~~PqFegQTK~kL~~~~~~ 381 (418)
T 1pvg_A 307 ISFVNSIATTMGGTHVNYITDQIVKKISEILKKKK-----KKSVKSFQIKNNMFIFINCLIENPAFTSQTKEQLTTRVKD 381 (418)
T ss_dssp EEEETTEECTTCBHHHHHHHHHHHHHHHHHHCC----------CCHHHHHTTEEEEEEECCSSCCBSSTTCCSBCCCGGG
T ss_pred EEEeCceeCCCCCcHHHHHHHHHHHHHHHHHHhcc-----cCCCCHHHHhhCeEEEEEEecCCCcccCccchhhcCcccc
Confidence 99999999999999999999999999999987632 3579999999999999999999999999999999998775
Q ss_pred hhhhhHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Q 009294 428 KVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAK 467 (538)
Q Consensus 428 ~~v~~~v~~~l~~~l~~n~~~~~~I~~~~~~~~ka~~aak 467 (538)
.+.++++.++|..||++ +.|+++++.+++||+||+
T Consensus 382 ~v~~~~v~e~l~~~l~~-----~~iv~ki~~~a~ar~aa~ 416 (418)
T 1pvg_A 382 FGSRCEIPLEYINKIMK-----TDLATRMFEIADANEENA 416 (418)
T ss_dssp SSSCCCCCHHHHHHHTT-----SHHHHHHHHHHHC-----
T ss_pred cccccchhHHHHHHHhh-----hHHHHHHHHHHHHHHHhh
Confidence 54457999999999985 556666666677776653
No 7
>1zxm_A TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; GHKL nucleotide-binding fold; HET: DNA ANP; 1.87A {Homo sapiens} PDB: 1zxn_A*
Probab=100.00 E-value=5.2e-96 Score=773.86 Aligned_cols=361 Identities=21% Similarity=0.284 Sum_probs=306.0
Q ss_pred cccceeccchhhhhhCCCeeeccCC----------------------CCchhHHHHHHHHhhHhhhc-cCCCCeEEEEEe
Q 009294 79 SEQIQVLEGLEAVRKRPAMYIGSTG----------------------PRGLHHLVYEILDNAVDEAQ-AGYASNIEVALL 135 (538)
Q Consensus 79 ~~~i~~L~~lE~VrkRP~mYIGs~~----------------------~~gL~~lv~EivdNAiDe~~-~g~~~~I~V~i~ 135 (538)
+++||+|++||||||||||||||++ .+||||+|||||||||||++ +|+|+.|.|+|+
T Consensus 3 ~~~~~~L~glE~VrkRPgmYiGst~~~~~~~~v~~~~~~~~~~~~~~~~GL~~lv~EivdNsiDe~~~~g~~~~I~V~i~ 82 (400)
T 1zxm_A 3 ERIYQKKTQLEHILLRPDTYIGSVELVTQQMWVYDEDVGINYREVTFVPGLYKIFDEILVNAADNKQRDPKMSCIRVTID 82 (400)
T ss_dssp HHHSEECCHHHHHHHCCHHHHCCCSCEEEEEEEEETTTEEEEEEEEECHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEE
T ss_pred hHhheecchHHHHHhCCCcEEccCCccccceeeeccccccccccccccchHHHHHHHHHhhHHhHHhhcCCCceEEEEEE
Confidence 4689999999999999999999999 68999999999999999996 699999999999
Q ss_pred cC-CeEEEEECCCCccCCccCCCCcchHHHhhhhcccCCCCCCCCCCeeeccccccchhhHHHhhcCeEEEEEEe--CCE
Q 009294 136 AD-NSVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWR--DGM 212 (538)
Q Consensus 136 ~d-g~isV~DnGrGIP~~~h~~~g~~~~e~v~t~lhagskf~~~~~~yk~sgG~~GvGls~vnalS~~~~V~t~~--~g~ 212 (538)
.| |+|+|+|||||||++.||++|+|++|++|+++||||||+++ .|++||||||+|+++|||||++|+|++++ +++
T Consensus 83 ~~~~~I~V~DnGrGIPv~~h~~~~~~~~e~v~t~lhagsKf~~~--~ykvSgGlhGvGlsvVnAlS~~l~v~v~~~~~g~ 160 (400)
T 1zxm_A 83 PENNLISIWNNGKGIPVVEHKVEKMYVPALIFGQLLTSSNYDDD--EKKVTGGRNGYGAKLCNIFSTKFTVETASREYKK 160 (400)
T ss_dssp TTTTEEEEEEESSCCCCSEETTTTEEHHHHHHHSSSEESCCCGG--GCCCCSCCSSCHHHHHHHTEEEEEEEEEETTTTE
T ss_pred CCCCEEEEEECCCcccCccccccCccchhheeeeecccCCCCCC--cccccCCccccceeeeEEeccceEEEEecCCCCc
Confidence 86 89999999999999999999999999999999999999986 99999999999999999999999999997 589
Q ss_pred EEEEEEeCCcccccceeeecCCCCCCCCCcEEEEEeCccccccccccCHHH---HHHHHHHHHhhCCCcEEEEeeCCCCC
Q 009294 213 EYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNT---IAGRIRELAFLNPKLTIALRKEDSDP 289 (538)
Q Consensus 213 ~y~q~f~~G~~~~~~~~~~~~~~~~~~~GT~V~F~PD~~~F~~~~~~~~~~---i~~rl~elA~lnpgl~i~l~d~~~~~ 289 (538)
.|+|+|++|++..++..+ . ....++||+|+|+||+++|. ...|+++. |.+|++++|++||||+|+|+|++.+
T Consensus 161 ~~~~~~~~G~~~~~~~~i--g-~~~~~~GT~V~F~Pd~~iF~-~~ef~~~~~~~l~~rlrelA~lnpgv~i~l~der~~- 235 (400)
T 1zxm_A 161 MFKQTWMDNMGRAGEMEL--K-PFNGEDYTCITFQPDLSKFK-MQSLDKDIVALMVRRAYDIAGSTKDVKVFLNGNKLP- 235 (400)
T ss_dssp EEEEEEETTTTEECCCEE--E-ECCSCCEEEEEEEECGGGGT-CSSCCHHHHHHHHHHHHHHHHHSSSCEEEETTEECC-
T ss_pred EEEEEEccCccccCccee--c-cCCCCCccEEEEEEChHHhC-ceeecHHHHHHHHHHHHHHHhhCCCcEEEEecCCCC-
Confidence 999999999877655433 1 12346899999999999996 45789988 8899999999999999999998732
Q ss_pred CCCceeEEeecccHHHHHHHHcCCCCCCCC-eeEEEEecceeEEEEEEEeccCCCCceEEEeeCceeccCCccchHHHHH
Q 009294 290 EKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKA 368 (538)
Q Consensus 290 ~~~~~~~f~~~~Gl~~yv~~l~~~~~~~~~-~i~~~~~~~~i~veval~~s~~~~~~~~~SFVN~I~T~~GGTHv~g~~~ 368 (538)
.+||++||++++.++.++++ ++.+..+.++++||+|++|++++| +++||||+|+|++||||++||++
T Consensus 236 ----------~~Gi~~yv~~l~~~~~~~~~~~~~~~~~~~~~~~eva~~~~~~~~--~~~sfvN~I~T~~GGTH~~gfr~ 303 (400)
T 1zxm_A 236 ----------VKGFRSYVDMYLKDKLDETGNSLKVIHEQVNHRWEVCLTMSEKGF--QQISFVNSIATSKGGRHVDYVAD 303 (400)
T ss_dssp ----------CCSHHHHHHHHHTTCBCSSSSBCCCEEEEEETTEEEEEEECSSSC--EEEEEETTEECTTEEHHHHHHHH
T ss_pred ----------CCCHHHHHHHHhcCCCccCCCCcceEEeecCcEEEEEEEEcCCCc--eEEEEeCCccCCCCCcHHHHHHH
Confidence 37999999999988776663 333333556788999999984467 38999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCcCCCCCHHhHhccceEEEEEeecCCCCCCccccccCChhhhhhhhh-HHHHHHHHHHHhChH
Q 009294 369 SLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQ-SVQEYLTEYLELHPD 447 (538)
Q Consensus 369 al~k~in~~~kk~~~~k~~~~~l~~~dIregL~~~vsvki~nP~FegQTKekL~n~ev~~~v~~-~v~~~l~~~l~~n~~ 447 (538)
||+++||+|+++++ +++.+++++||||||++||||+++||+|+||||+||+|+++ .++.. .+.+.|..|| .||.
T Consensus 304 altr~i~~y~~k~~---k~~~~l~~~Dvregl~avisvkv~~PqFegQTK~kL~~~~~-~~v~~~~~~~~~~~~l-~~~~ 378 (400)
T 1zxm_A 304 QIVTKLVDVVKKKN---KGGVAVKAHQVKNHMWIFVNALIENPTFDSQTKENMTLQPK-SFGSTCQLSEKFIKAA-IGCG 378 (400)
T ss_dssp HHHHHHHHHHTTCC-------CCCHHHHHTTEEEEEEECCSSCCBSSTTCCEECCCGG-GSSSCCCCCHHHHHHH-TTC-
T ss_pred HHHHHHHHHHHHhc---ccCCCcCHHHHhhCeEEEEEEecCCCCcCcccchhhcCccc-ccccccchhHHHHHHH-cChH
Confidence 99999999998762 34568999999999999999999999999999999999987 77777 8999999999 7999
Q ss_pred HHHHHHHHHHHHHHHH
Q 009294 448 VLDSILSKSLSALKAA 463 (538)
Q Consensus 448 ~~~~I~~~~~~~~ka~ 463 (538)
+++.|+++++.+++++
T Consensus 379 ~~~~i~~~a~~~~~~~ 394 (400)
T 1zxm_A 379 IVESILNWVKFKAQVQ 394 (400)
T ss_dssp ----------------
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999997666543
No 8
>3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, B-subunit binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus}
Probab=100.00 E-value=2e-89 Score=718.25 Aligned_cols=344 Identities=30% Similarity=0.530 Sum_probs=311.5
Q ss_pred eccchhhhhhCCCeeeccCCCCchhHHHHHHHHhhHhhhccCCCCeEEEEEecCCeEEEEECCCCccCCccCCCCcchHH
Q 009294 84 VLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLADNSVSVADNGRGIPIDLHPATNKSALE 163 (538)
Q Consensus 84 ~L~~lE~VrkRP~mYIGs~~~~gL~~lv~EivdNAiDe~~~g~~~~I~V~i~~dg~isV~DnGrGIP~~~h~~~g~~~~e 163 (538)
.++.||||||||||||||++.+||+|+|||||||||||+++|+|++|+|+|++||+|+|+|||||||+ |
T Consensus 8 ~~~~lE~vrkRPgmYiGs~~~~gl~~~v~ElvdNsiDe~~~g~a~~I~V~i~~~g~I~V~DnGrGIp~-----------e 76 (369)
T 3cwv_A 8 PGGIVENVRKRPGMYCGDVGEYGLHHLVYFLLDVAYEEARRGECRDVVLEVGGDGSIALFCTSRTVTA-----------E 76 (369)
T ss_dssp -CCHHHHHHHSTHHHHSCSSHHHHHHHHHHHHHHHHHHHHTTCCSEEEEEECTTSCEEEEEEESSCCH-----------H
T ss_pred CccHhHHHHhCCceEEcCCCCchHHHHHHHHHhhhHhHHhhCCCCEEEEEEeCCCEEEEEECCCCcCH-----------h
Confidence 45679999999999999999999999999999999999999999999999999999999999999997 7
Q ss_pred HhhhhcccCCCCCCCC--CCeeeccccccchhhHHHhhcCeEEEEEEeCCEEEEEEEeCCcc------cccceeeecCCC
Q 009294 164 TVLTVLHAGGKFGGSS--SGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRGKP------VTTLTCHVLPVD 235 (538)
Q Consensus 164 ~v~t~lhagskf~~~~--~~yk~sgG~~GvGls~vnalS~~~~V~t~~~g~~y~q~f~~G~~------~~~~~~~~~~~~ 235 (538)
++| ++||||||++.+ +.|+++| |+++|||||++|+|+++++|+.|+|+|++|++ +.++.++ +
T Consensus 77 ~v~-~lhagsKf~~~~~~~~y~vsG-----Gls~vnalSs~l~v~t~r~g~~~~~~~~~G~~~~~~~~~~~l~~~----g 146 (369)
T 3cwv_A 77 NLV-RVATGAGFLGRPPGDGWGWDS-----MLVVSLALSSRYQVDIWADGRQWRVMGEHGHPQGEGAAVTPMEPM----P 146 (369)
T ss_dssp HHH-HHHTTTTGGGSSCCCSTTTTS-----SHHHHHHTEEEEEEEEEETTEEEEEEEETTEECTTCEEESSCCCC----S
T ss_pred Hee-eeecCCCcCCCcccccccccC-----HHHHHHHhhceEEEEEEECCCEEEEEEeCCcccccccccCCceEe----c
Confidence 899 999999999833 4899884 79999999999999999999999999999998 5544322 3
Q ss_pred CCCCCCcEEEEEeCccccccccccCHHHHHHHHHHHHhhCCCcEEEEeeCCCCCCCCceeEEeecccHHHHHHHHcCCCC
Q 009294 236 SKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKK 315 (538)
Q Consensus 236 ~~~~~GT~V~F~PD~~~F~~~~~~~~~~i~~rl~elA~lnpgl~i~l~d~~~~~~~~~~~~f~~~~Gl~~yv~~l~~~~~ 315 (538)
...++||+|+|+||+++|. +..++++.|.+||+++|++||+|+|+|++++.+ .++.|+|++||.+||.+++++++
T Consensus 147 ~~~~~GT~V~f~Pd~~~F~-~~~~e~~~l~~rl~~lA~lnpgv~i~l~d~~~~----~~~~f~~~gGl~~~v~~l~~~~~ 221 (369)
T 3cwv_A 147 VSAERGVRVHFVPDATIFE-VLAFDRARLSRRCNELAALAPGLRVSFADLQRG----ERTLWHLPGGVAQWAHVLTEARP 221 (369)
T ss_dssp SCCSEEEEEEEEECTTTCS-CCCCCHHHHHHHHHHHHHHSTTCEEEEEETTTT----EEEEEECTTHHHHHHHHHHTTSC
T ss_pred ccCCCCCEEEEEECHHHhC-CccccHHHHHHHHHHHcCcCCCcEEEEEeCCCC----eeEEEEeCchHHHHHHHHhcCCc
Confidence 3357999999999999994 467999999999999999999999999999843 35789999999999999998777
Q ss_pred CCC-CeeEEEEecceeEEEEEEEeccCCCCceEEEeeCceeccCCccchHHHHHHHHHHHHHHHHhcCCCCCcCCCCCHH
Q 009294 316 PLH-DVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGE 394 (538)
Q Consensus 316 ~~~-~~i~~~~~~~~i~veval~~s~~~~~~~~~SFVN~I~T~~GGTHv~g~~~al~k~in~~~kk~~~~k~~~~~l~~~ 394 (538)
+++ +++++..+.+++.|+++++|+ ++|++.++||||+|+|++||||++||++||++++++|++ +++.+++++
T Consensus 222 ~~~~~~i~~~~~~~~i~ve~a~~~~-~~~~~~~~sFVN~i~t~~GGTH~~g~~~al~~a~~~~~k------~~~~~l~~~ 294 (369)
T 3cwv_A 222 QLHPEPVVFDFTWDGLRVQCALQWC-EDEDSTLLSFANAVRTVRHGAHVKGVTQALRGALAKLSG------ETRGAFPWA 294 (369)
T ss_dssp BSSSSCEEEEEEETTEEEEEEEEEB-SSSCCEEEEEETTEECTTCBHHHHHHHHHHHHHHHHHHT------CCGGGSCHH
T ss_pred ccCCCcEEEEEecCCEEEEEEEEec-CCCCeeEEEEECCEEeCCCCCHHHHHHHHHHHHHHHHHh------hcCCCcCHH
Confidence 776 678888888899999999998 789999999999999999999999999999999999992 224579999
Q ss_pred hHhccceEEEEEeecCCC--CCCccccccCChhhhhhhhhHHHHHHHHHHHhChHHHHHHHHHHHHHH
Q 009294 395 HVREGLTCIISVRVPNPE--FEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSAL 460 (538)
Q Consensus 395 dIregL~~~vsvki~nP~--FegQTKekL~n~ev~~~v~~~v~~~l~~~l~~n~~~~~~I~~~~~~~~ 460 (538)
||||||++||||+++||+ |+||||++|+|++++.+|++++.+.|..||++||++++.|++|++.++
T Consensus 295 dvregl~avisvk~~~P~~~FegQTK~kL~~~e~~~~v~~~v~~~l~~~l~~np~~a~~i~~k~~~~~ 362 (369)
T 3cwv_A 295 RVAQGLTAIVAVSGPRRQMAFAGPTKELLAIPGLEEAIRKQLQPLFIELLREHPVTPALLARRTSGSE 362 (369)
T ss_dssp HHTTTEEEEEEEECCGGGCCBSSTTCCSBCCTTHHHHHHHHHHHHHHHHHHTCTTHHHHHTTC-----
T ss_pred HHhhccEEEEEeccCCcchhccccccchhcCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHhc
Confidence 999999999999999999 999999999999999999999999999999999999999999998664
No 9
>4duh_A DNA gyrase subunit B; structure-based drug design, antibacterial, DNA gyrase B, GY isomerase-isomerase inhibitor complex; HET: DNA RLI; 1.50A {Escherichia coli} PDB: 1aj6_A* 1kzn_A* 3g7e_A*
Probab=100.00 E-value=3.7e-67 Score=512.92 Aligned_cols=216 Identities=50% Similarity=0.871 Sum_probs=182.7
Q ss_pred CCCcccceeccchhhhhhCCCeeeccCCC-CchhHHHHHHHHhhHhhhccCCCCeEEEEEecCCeEEEEECCCCccCCcc
Q 009294 76 TYGSEQIQVLEGLEAVRKRPAMYIGSTGP-RGLHHLVYEILDNAVDEAQAGYASNIEVALLADNSVSVADNGRGIPIDLH 154 (538)
Q Consensus 76 ~y~~~~i~~L~~lE~VrkRP~mYIGs~~~-~gL~~lv~EivdNAiDe~~~g~~~~I~V~i~~dg~isV~DnGrGIP~~~h 154 (538)
+|++++||+|+++|||||||||||||++. +||+|+|+||||||+||+++|+|+.|.|+|+.||+|+|+|||||||++.|
T Consensus 4 ~y~~~~i~~l~~le~vr~rPgmYiG~~~~~~gl~~lv~ElvdNsiDea~~g~~~~I~V~i~~~g~i~V~DnGrGIp~~~~ 83 (220)
T 4duh_A 4 SYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIHADNSVSVQDDGRGIPTGIH 83 (220)
T ss_dssp -----------CHHHHHHSTHHHHCCSSSSHHHHHHHHHHHHHHHHHHHHSCCCEEEEEECTTSCEEEEECSSCCCCSEE
T ss_pred ccChhHcEEechhHHHHhCCceEECCCCCcccHHHHHHHHHHHHHHHHhcCCCCEEEEEEeCCCcEEEEECCcCcccccc
Confidence 69999999999999999999999999998 89999999999999999999999999999999999999999999999999
Q ss_pred CCCCcchHHHhhhhcccCCCCCCCCCCeeeccccccchhhHHHhhcCeEEEEEEeCCEEEEEEEeCCcccccceeeecCC
Q 009294 155 PATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPV 234 (538)
Q Consensus 155 ~~~g~~~~e~v~t~lhagskf~~~~~~yk~sgG~~GvGls~vnalS~~~~V~t~~~g~~y~q~f~~G~~~~~~~~~~~~~ 234 (538)
|++|+|++|++|++|||||||+++ .|++||||||+|+++|||||++|+|+++|+|+.|+|+|++|+++.++..+
T Consensus 84 ~~~~~~~~e~i~t~lhag~Kfd~~--~yk~SgGlhGvG~svvNAlS~~l~v~v~r~g~~~~~~f~~G~~~~~l~~~---- 157 (220)
T 4duh_A 84 PEEGVSAAEVIMTVLHAGGKFDDN--SYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVT---- 157 (220)
T ss_dssp TTTTEEHHHHHHHSTTCSSCCCTT--C--------CCCHHHHHHTEEEEEEEEEETTEEEEEEEETTEESSSCEEE----
T ss_pred cccCcchhhheeeecccCCCcCCC--ccccccCccceecchhcccccceEEEEEECCEEEEEEecCCcCcCCceec----
Confidence 999999999999999999999987 89999999999999999999999999999999999999999998776543
Q ss_pred CCCCCCCcEEEEEeCccccccccccCHHHHHHHHHHHHhhCCCcEEEEeeCCCCCCCCceeEEeecc
Q 009294 235 DSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAG 301 (538)
Q Consensus 235 ~~~~~~GT~V~F~PD~~~F~~~~~~~~~~i~~rl~elA~lnpgl~i~l~d~~~~~~~~~~~~f~~~~ 301 (538)
+...++||+|+|+||+++|.++..++++.|.+||+++|++||||+|+|+|++.+ +.+.|+|++
T Consensus 158 g~~~~~GT~V~F~Pd~~~F~~~~~~~~~~l~~rlrelA~ln~gv~i~l~der~~----~~~~~~y~g 220 (220)
T 4duh_A 158 GETEKTGTMVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDG----KEDHFHYEG 220 (220)
T ss_dssp EECSCCEEEEEEEECTTTCCSSCSCCHHHHHHHHHHHHHHCTTSEEEEEETTTC----CEEEEC---
T ss_pred cccCCCCcEEEEEECHHHhCCcccCCHHHHHHHHHHHHhcCCCCEEEEEccCCC----cEEEEEcCC
Confidence 334679999999999999986547999999999999999999999999999953 467899975
No 10
>4emv_A DNA topoisomerase IV, B subunit; protein-inhibitor complex, ATP binding, structure-based drug antimicrobial, virtual screen; HET: DNA 0R9; 1.70A {Streptococcus pneumoniae GA47373} PDB: 4em7_A*
Probab=100.00 E-value=3.3e-65 Score=500.42 Aligned_cols=217 Identities=51% Similarity=0.854 Sum_probs=180.7
Q ss_pred CCCCcccceeccchhhhhhCCCeeeccCCCCchhHHHHHHHHhhHhhhccCCCCeEEEEEecCCeEEEEECCCCccCCcc
Q 009294 75 KTYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLADNSVSVADNGRGIPIDLH 154 (538)
Q Consensus 75 ~~y~~~~i~~L~~lE~VrkRP~mYIGs~~~~gL~~lv~EivdNAiDe~~~g~~~~I~V~i~~dg~isV~DnGrGIP~~~h 154 (538)
++|++++||+|+++|||||||||||||++.+||+|+|+|||+||+||+++|+|+.|.|+|+.+|+|+|+|||+|||++.|
T Consensus 9 ~~y~~~~i~~l~~le~vr~RPgmYiGs~~~~gl~~~v~Eiv~NaiD~~~~g~~~~I~V~i~~~g~i~V~DnG~GIp~~~h 88 (226)
T 4emv_A 9 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSGFGDRIDVTINKDGSLTVQDHGRGMPTGMH 88 (226)
T ss_dssp --------CCCBCTHHHHHCHHHHHSCSSHHHHHHHHHHHHHHHHHHHHTTCCSEEEEEECTTSCEEEEECSSCCCCSBC
T ss_pred hcCChhhcEEcchhHHHhhCCceEEcCCCcccHHHHHHHHHHHHHHHHhcCCCcEEEEEEeCCCeEEEEEcCCCcccccc
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcchHHHhhhhcccCCCCCCCCCCeeeccccccchhhHHHhhcCeEEEEEEeCCEEEEEEEeCC-cccccceeeecC
Q 009294 155 PATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRG-KPVTTLTCHVLP 233 (538)
Q Consensus 155 ~~~g~~~~e~v~t~lhagskf~~~~~~yk~sgG~~GvGls~vnalS~~~~V~t~~~g~~y~q~f~~G-~~~~~~~~~~~~ 233 (538)
++|+|++|++|++|||||||+++ .|++||||||+|+++|||||++|+|+++|+|+.|+|+|++| +++.+++.+.
T Consensus 89 -~~~~~~~e~v~t~lhag~Kfd~~--~yk~SgGlhGvG~svvNALS~~l~v~v~r~g~~~~q~f~~Gg~~~~~l~~ig-- 163 (226)
T 4emv_A 89 -AMGIPTVEVIFTILHAGGKFGQG--GYKTSGGLHGVGSSVVNALSSWLEVEITRDGAVYKQRFENGGKPVTTLKKIG-- 163 (226)
T ss_dssp -GGGCBHHHHHHHCBC----------------CGGGCCHHHHHHTEEEEEEEEEETTEEEEEEEETTTEESSCSEEEE--
T ss_pred -ccCceehheeEEeecccCccCcc--ceEeccccccccchhhhhcccceEEEEEeCCcEEEEEECCCCEEcCCceEec--
Confidence 89999999999999999999987 89999999999999999999999999999999999999999 8887765431
Q ss_pred CCCCCCCCcEEEEEeCccccccccccCHHHHHHHHHHHHhhCCCcEEEEeeCCCCCCCCceeEEeecc
Q 009294 234 VDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAG 301 (538)
Q Consensus 234 ~~~~~~~GT~V~F~PD~~~F~~~~~~~~~~i~~rl~elA~lnpgl~i~l~d~~~~~~~~~~~~f~~~~ 301 (538)
.....++||+|+|+||+++|.. ..|+++.|.+||+++|++||||+|+|+|++.+ ..+.|+|++
T Consensus 164 ~~~~~~~GT~V~F~PD~~iF~~-~~~~~~~l~~rlrelA~ln~gv~i~l~der~~----~~~~f~y~g 226 (226)
T 4emv_A 164 TALKSKTGTKVTFMPDATIFST-TDFKYNTISERLNESAFLLKNVTLSLTDKRTD----EAIEFHYEN 226 (226)
T ss_dssp ECCTTCCEEEEEEEECTTTCSC-CCCCHHHHHHHHHHHHHHHCSCEEEEEETTTC----CEEEECCCC
T ss_pred ccCCCCCCeEEEEEECHHHcCC-CCcCHHHHHHHHHHHhhcCCCCEEEEEecCCC----cEEEEEcCC
Confidence 1112679999999999999965 57999999999999999999999999999954 357899975
No 11
>3ttz_A DNA gyrase subunit B; protein-inhibitor complex, ATP-binding, structure-based drug antimicrobial, isomerase-isomerase inhibitor complex; HET: DNA 07N; 1.63A {Staphylococcus aureus} PDB: 3u2d_A* 3u2k_A* 3g75_A* 3g7b_A*
Probab=100.00 E-value=7.4e-57 Score=433.86 Aligned_cols=197 Identities=53% Similarity=0.845 Sum_probs=179.3
Q ss_pred CCcccceeccchhhhhhCCCeeeccCCCCchhHHHHHHHHhhHhhhccCCCCeEEEEEecCCeEEEEECCCCccCCccCC
Q 009294 77 YGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLADNSVSVADNGRGIPIDLHPA 156 (538)
Q Consensus 77 y~~~~i~~L~~lE~VrkRP~mYIGs~~~~gL~~lv~EivdNAiDe~~~g~~~~I~V~i~~dg~isV~DnGrGIP~~~h~~ 156 (538)
|++++||+|+++|||||||||||||++.+||+|+|+|||+||+||+++|+|+.|.|+|+.+|+|+|+|||+|||++.|++
T Consensus 2 y~~~~i~~l~~le~vr~RPgmYiGs~~~~gl~~~v~Elv~NsiD~~~ag~~~~I~V~i~~~g~i~V~DnG~Gip~~~h~~ 81 (198)
T 3ttz_A 2 YGAGQIQVLEGLEAVRKRPGMYIGSTSERGLHHLVWEIVDNSIDEALAGYANQIEVVIEKDNWIKVTDNGRGIPVDIQEK 81 (198)
T ss_dssp CCHHHHHHHHHHHHHHHSHHHHHSCSSHHHHHHHHHHHHHHHHHHHHTTSCCEEEEEEEGGGEEEEEECSSCCCCSBCTT
T ss_pred CChhHeEEecchHHHhcCCCcEECCCCCcchHHHHHHHHHHHHhHHhcCCCcEEEEEEeCCCeEEEEECCCCccccccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcchHHHhhhhcccCCCCCCCCCCeeeccccccchhhHHHhhcCeEEEEEEeCCEEEEEEEeCCcccccceeeecCCCC
Q 009294 157 TNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDS 236 (538)
Q Consensus 157 ~g~~~~e~v~t~lhagskf~~~~~~yk~sgG~~GvGls~vnalS~~~~V~t~~~g~~y~q~f~~G~~~~~~~~~~~~~~~ 236 (538)
+|++.+|++|+ +|+|||||++|+|+++++|+.|+|+|++|+++.++..+ +.
T Consensus 82 ~~~~~~e~i~t-------------------------~SvVNALS~~l~v~v~r~g~~~~~~f~~G~~~~~l~~i----~~ 132 (198)
T 3ttz_A 82 MGRPAVEVILT-------------------------SSVVNALSQDLEVYVHRNETIYHQAYKKGVPQFDLKEV----GT 132 (198)
T ss_dssp TSSBHHHHHHH-------------------------TCHHHHTEEEEEEEEEETTEEEEEEEETTEESSCCEEE----EE
T ss_pred CCCccccccce-------------------------eEehhhhcCeEEEEEEECCcEEEEEEeCCEECCCceec----cC
Confidence 99999999987 89999999999999999999999999999998776543 23
Q ss_pred CCCCCcEEEEEeCccccccccccCHHHHHHHHHHHHhhCCCcEEEEeeCCCCCCCCceeEEeecccH
Q 009294 237 KDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGL 303 (538)
Q Consensus 237 ~~~~GT~V~F~PD~~~F~~~~~~~~~~i~~rl~elA~lnpgl~i~l~d~~~~~~~~~~~~f~~~~Gl 303 (538)
..++||+|+|+||+++|..+..++++.|.+||+++|++||||+|+|+|++.+.+ .+.+.|+|++||
T Consensus 133 ~~~~GT~V~F~Pd~~iF~~~~~~~~~~l~~rlrelA~ln~gv~i~l~der~~~~-~~~~~f~~~gGi 198 (198)
T 3ttz_A 133 TDKTGTVIRFKADGEIFTETTVYNYETLQQRIRELAFLNKGIQITLRDERDEEN-VREDSYHYEGGI 198 (198)
T ss_dssp CSCCEEEEEEEECTTTCCSCCCCCHHHHHHHHHHHHHHSTTCEEEEEECSSTTS-CEEEEECCC---
T ss_pred CCCCCcEEEEEECHHHhccCCccCHHHHHHHHHHHhhcCCCCEEEEEeecCCCC-cceEEEEcCCCC
Confidence 457999999999999994456799999999999999999999999999985311 135789999986
No 12
>3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A*
Probab=100.00 E-value=3.6e-56 Score=430.47 Aligned_cols=201 Identities=43% Similarity=0.756 Sum_probs=163.6
Q ss_pred chhhhhhCCCeeeccCCCCchhHHHHHHHHhhHhhhccCCCCeEEEEEecCCeEEEEECCCCccCCccCCCCcchHHHhh
Q 009294 87 GLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLADNSVSVADNGRGIPIDLHPATNKSALETVL 166 (538)
Q Consensus 87 ~lE~VrkRP~mYIGs~~~~gL~~lv~EivdNAiDe~~~g~~~~I~V~i~~dg~isV~DnGrGIP~~~h~~~g~~~~e~v~ 166 (538)
|||||||||||||||+++ +|+|+|||+||+||+++|+|+.|.|+|+.+|+|+|+|||+|||++.||++|+|++|++|
T Consensus 1 gle~vr~rpgmyig~~~~---~~~v~Elv~NsiDa~~~g~a~~I~V~i~~~g~i~V~DnG~GIp~~~~~~~~~~~~e~i~ 77 (201)
T 3fv5_A 1 GLEPVRRRPGMYTDTTRP---NHLGQEVIDNSVDEALAGHAKRVDVILHADQSLEVIDDGRGMPVDIHPEEGVPAVELIL 77 (201)
T ss_dssp CCHHHHHCGGGTSCTTST---HHHHHHHHHHHHHHHHTTCCSEEEEEECTTSCEEEEECSSCCCCSBCTTCSSBHHHHHH
T ss_pred CchhhccCCccEECCCCh---hhhhHHHHHHHHHHHhcCCCcEEEEEEeCCCEEEEEECCCCcCcccccccCcchhheee
Confidence 699999999999999876 99999999999999999999999999998999999999999999999999999999999
Q ss_pred hhcccCCCCCCCCCCeeeccccccchhhHHHhhcCeEEEEEEeCCEEEEEEEeCCcccccceeeecCCCCCCCCCcEEEE
Q 009294 167 TVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRF 246 (538)
Q Consensus 167 t~lhagskf~~~~~~yk~sgG~~GvGls~vnalS~~~~V~t~~~g~~y~q~f~~G~~~~~~~~~~~~~~~~~~~GT~V~F 246 (538)
+++||||||+++ .|++|+||||+|++++||||++|+|+++++|+.|+|+|++|+++.+++.+.. ....++||+|+|
T Consensus 78 ~~~hatsK~~~~--~~~~s~GfrGeglssinalS~~l~v~t~~~g~~~~~~~~~G~~~~~~~~~g~--~~~~~~GT~V~f 153 (201)
T 3fv5_A 78 CRLHAGGKFSNK--NYQFSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGT--CGKRNTGTSVHF 153 (201)
T ss_dssp HCC-----------------------CHHHHHTEEEEEEEEEETTEEEEEEEETTEEEEEEEEEEE--CCTTCCEEEEEE
T ss_pred eeeccccCcCCC--cccccCcccceecchhhcccceEEEEEEecCceEEEEEeCCEEcccceeccc--CCCCCCCeEEEE
Confidence 999999999986 8999999999999999999999999999999999999999998766543310 112579999999
Q ss_pred EeCccccccccccCHHHHHHHHHHHHhhCCCcEEEEeeCCCCCCCCceeEEee
Q 009294 247 WPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFF 299 (538)
Q Consensus 247 ~PD~~~F~~~~~~~~~~i~~rl~elA~lnpgl~i~l~d~~~~~~~~~~~~f~~ 299 (538)
+||+++|. +..++++.|.+||+++|++||+|+|+|++++.+ +.+.|+|
T Consensus 154 ~Pdr~~F~-~~~~e~~~i~~~l~~lA~l~pgv~~~l~~~r~~----~~~~~~y 201 (201)
T 3fv5_A 154 WPDETFFD-SPRFSVSRLTHVLKAKAVLCPGVEITFKDEINN----TEQRWCY 201 (201)
T ss_dssp EECGGGSS-CCCCCHHHHHHHHHHHHHHSTTCEEEEEETTTT----EEEEECC
T ss_pred EECHHHcC-CCccCHHHHHHHHHHHHHhCCCCEEEEEecCCC----cEEEEEC
Confidence 99999995 567999999999999999999999999999854 3567776
No 13
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei}
Probab=100.00 E-value=5.8e-41 Score=370.77 Aligned_cols=303 Identities=19% Similarity=0.202 Sum_probs=235.4
Q ss_pred cceeccchhhhhhCCCeeeccCCCCchhHHHHHHHHhhHhhhc-cCCCCeEEEEEecCC----eEEEEECCCCccCCccC
Q 009294 81 QIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQ-AGYASNIEVALLADN----SVSVADNGRGIPIDLHP 155 (538)
Q Consensus 81 ~i~~L~~lE~VrkRP~mYIGs~~~~gL~~lv~EivdNAiDe~~-~g~~~~I~V~i~~dg----~isV~DnGrGIP~~~h~ 155 (538)
+++.++-.++++++|+||....+..+|+++++|||+||+|+.. +|++..|.|+++.++ .|+|+|||+|||.+.
T Consensus 12 ~~k~isi~~~~~~~~~~~~~~~D~~~L~~Vl~ELV~NAIDa~~~~g~~~~I~V~i~~~~~~~~~I~V~DnG~GIp~e~-- 89 (621)
T 2q2e_B 12 KQKSISVAEFFEKNRQILGFDSAPRSLITTVKEAVDNALDACEEAGILPDILVQVERTGPDYVTVIIEDNGPGIVREQ-- 89 (621)
T ss_dssp CCCCSCSHHHHHHSTTTSSCSSHHHHHHHHHHHHHHHHHHHHTTTSCSCEEEECCEEETTTEEEEEEECCSCCCCGGG--
T ss_pred HhhcCceEEEecCCCceeEEecCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEEEEECCCcEEEEEEEECCCCCCHHH--
Confidence 4556777899999999997777889999999999999999998 577889999998655 699999999999987
Q ss_pred CCCcchHHHhhhhcccCCCCCCCCCCeeeccccccchhhHHHhhcCeE-----EEEEEeCC--EEEEEEE----eCCccc
Q 009294 156 ATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESL-----EVTVWRDG--MEYHQKY----SRGKPV 224 (538)
Q Consensus 156 ~~g~~~~e~v~t~lhagskf~~~~~~yk~sgG~~GvGls~vnalS~~~-----~V~t~~~g--~~y~q~f----~~G~~~ 224 (538)
++.+|+.+|+|++|.. ++.++|+||+|+++++++|+++ +|++.+++ ..|.++| ++|.+.
T Consensus 90 ------l~~iF~~~~atskf~~----~~~s~Gg~GlGLsiv~~ls~~~gG~~I~V~S~~~gg~~g~~~~~~lp~~~g~~~ 159 (621)
T 2q2e_B 90 ------IPKVFAKLLYGSRFHA----LKQSRGQQGIGISAAVLYAQMTAGRHTKILSKTSPTAPAHYYELMINTSTNEPD 159 (621)
T ss_dssp ------HHHHHSCCCCC--CCC----CC-CCSSSSHHHHHHHHHHHHHTCCCCEEEEECSSSSCEEEEECCCCSSSCSCC
T ss_pred ------HHHHhhhhccCCcccc----ccccCCCceechhhhhHHHHHhCCCceeEEeeccCCccceEEEEecchhccccc
Confidence 4568999999999974 4678899999999999999985 99998876 7899999 677665
Q ss_pred ccceeeecCCCCCCCCCcEEEEEeCccccccccccCH---HHHHHHHHHHHhhCCCcEEEEeeCCCCCCCCceeEEeecc
Q 009294 225 TTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDH---NTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAG 301 (538)
Q Consensus 225 ~~~~~~~~~~~~~~~~GT~V~F~PD~~~F~~~~~~~~---~~i~~rl~elA~lnpgl~i~l~d~~~~~~~~~~~~f~~~~ 301 (538)
...... .+...++||+|+|+ |.. .++. +.|.++|+++|++||+++|+|.+++ .+.|+|++
T Consensus 160 ~~~~~~---~~~~~~~GT~V~~~-----f~~--~~~~~~~~~I~~~L~~lAllnpgv~I~L~d~~-------~~~~~~~g 222 (621)
T 2q2e_B 160 ILVDEV---RDWFRPHGTQIELE-----MRA--AYVKGRRQSIYEYLKATAIVNPHARITLIDPD-------GNEEVFER 222 (621)
T ss_dssp CCCEEE---CCCSCSSCCCEEEE-----CSC--CCCCCSSSSSHHHHHHHHHHCCSCEEEECCTT-------SCCEEEEC
T ss_pred cccccc---ccCCCCCCCEEEEE-----ecC--ccchHHHHHHHHHHHHHHhhCCCCEEEEEECC-------ceEEEeCC
Confidence 421111 13456799999999 532 2343 7899999999999999999999987 26799999
Q ss_pred cHHHHHHHHcCCCCCCCCeeEEEEecceeEEEEEEEeccCCCCceEEEeeCceeccCCccchHHHHHHHHHHHHHHHHhc
Q 009294 302 GLEEYVQWLNTDKKPLHDVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKS 381 (538)
Q Consensus 302 Gl~~yv~~l~~~~~~~~~~i~~~~~~~~i~veval~~s~~~~~~~~~SFVN~I~T~~GGTHv~g~~~al~k~in~~~kk~ 381 (538)
|+ .+++....++++.+ .+...+ .++++++|+ ++| ++.||||+++|++|| +++|+|+++.
T Consensus 223 g~----~~L~~~~~~i~p~~--~G~~~~-~~eval~~~-~~~--~i~sFvN~i~T~~GG-----------r~in~~~~~~ 281 (621)
T 2q2e_B 223 AT----DKMPEPAEEILPHP--EGIELG-TLMKMLHYT-ERQ--KLAPFLRYSFCKIGL-----------LTAEEICKAA 281 (621)
T ss_dssp CC----CCCCCCCCCCCCCS--TTCCHH-HHHHHHHHC-C-------CTTSSSSCC--C-----------HHHHHHHHTT
T ss_pred cc----cchhcccccccCCc--eeeccC-eEEEEEeeC-CCe--EEEEEeCCcccCCCH-----------HHHHHHHHHh
Confidence 86 33444444444222 111112 456777887 677 599999999999999 6788999988
Q ss_pred CCCCC-cCCCCCHHhHhccceEEEEEeecCCCCCCccccccCChhhhhhhhhHHHHHHHHHHH
Q 009294 382 KTVKD-KDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLE 443 (538)
Q Consensus 382 ~~~k~-~~~~l~~~dIregL~~~vsvki~nP~FegQTKekL~n~ev~~~v~~~v~~~l~~~l~ 443 (538)
++.|+ ++.+++++|||+||++|+||+++||+|+ +++.+++..+.+.|.+||.
T Consensus 282 ~l~k~~~~~~lt~dDiregL~avisvki~~Pqtk----------~l~pige~~i~~~l~~~~~ 334 (621)
T 2q2e_B 282 GLDPEIDPHALGRHEARKLIEAFEKVKIMAPPTD----------CLSPIGEDLIYRGLEKETT 334 (621)
T ss_dssp TCCTTSCSSSCCSSSSTTTTHHHHTSCCSCCCST----------TCCCCCHHHHHHHHHHHSC
T ss_pred CccccccCCCCCHHHHHhhcEEEEEEECCCCCcc----------ccChhHHHHHHHHHHHhcC
Confidence 88776 5678999999999999999999999754 6777888888888888874
No 14
>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens}
Probab=99.96 E-value=9.1e-29 Score=256.53 Aligned_cols=282 Identities=13% Similarity=0.170 Sum_probs=199.8
Q ss_pred cccceeccchhhhhhCCCeeeccCCCCchhHHHHHHHHhhHhhhccCCCCeEEEEEecCC--eEEEEECCCCccCCccCC
Q 009294 79 SEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLADN--SVSVADNGRGIPIDLHPA 156 (538)
Q Consensus 79 ~~~i~~L~~lE~VrkRP~mYIGs~~~~gL~~lv~EivdNAiDe~~~g~~~~I~V~i~~dg--~isV~DnGrGIP~~~h~~ 156 (538)
+..|+.|+.-..-+.++|++|. .|.++++|||+||+|+. ++.|.|.++.+| .|+|.|||+|||.+..+
T Consensus 6 ~~~I~~L~~~~~~~Iaagevi~-----~~~~vv~eLv~NAidA~----a~~I~I~i~~~~~~~I~V~DnG~GI~~~~l~- 75 (348)
T 3na3_A 6 AGVIRRLDETVVNRIAAGEVIQ-----RPANAIKEMIENCLDAK----STSIQVIVKEGGLKLIQIQDNGTGIRKEDLD- 75 (348)
T ss_dssp CCCCCCCCHHHHHHHHHHHHCC-----SHHHHHHHHHHHHHHTT----CSEEEEEEEGGGTSEEEEEECSCCCCGGGGG-
T ss_pred ccccccCCHHHHHhhcccCccc-----CHHHHHHHHHHHHHHcC----CCEEEEEEEeCCEEEEEEEECCcCcChHHhh-
Confidence 3459999999999999999964 56899999999999995 899999999766 49999999999998743
Q ss_pred CCcchHHHhhhhcccCCCCCCCCCCee-eccccccchhhHHHhhcCeEEEEEEeCC--EEEEEEEeCCcccccceeeecC
Q 009294 157 TNKSALETVLTVLHAGGKFGGSSSGYS-VSGGLHGVGLSVVNALSESLEVTVWRDG--MEYHQKYSRGKPVTTLTCHVLP 233 (538)
Q Consensus 157 ~g~~~~e~v~t~lhagskf~~~~~~yk-~sgG~~GvGls~vnalS~~~~V~t~~~g--~~y~q~f~~G~~~~~~~~~~~~ 233 (538)
.+| ..|+++|+++.++.+. .|+||||+|+++++++| +++|+|++++ ..|+++|++|.+..++.+
T Consensus 76 -------~~~-~~~~tsK~~~~~dl~~i~s~GfrGeaL~Si~avs-~l~v~sr~~~~~~~~~~~~~~G~~~~~~~~---- 142 (348)
T 3na3_A 76 -------IVC-ERFTTSKLQSFEDLASISTYGFRGEALASISHVA-HVTITTKTADGKCAYRASYSDGKLKAPPKP---- 142 (348)
T ss_dssp -------TTT-STTCCSSCCCC---------CCTTCHHHHHHHSS-EEEEEEECTTCSSEEEEEEETTEESSCCEE----
T ss_pred -------hhh-ccccccccCcchhhhccccCCcCChHHHHhhccc-EEEEEEEECCCCceEEEEEeCCEEeeeeeE----
Confidence 355 4599999987555664 79999999999999998 8999999877 489999999988654432
Q ss_pred CCCCCCCCcEEEE------EeCccccccccccCHHHHHHHHHHHHhhCCCcEEEEeeCCCCCCCCceeEEeec--ccHHH
Q 009294 234 VDSKDRQGTRIRF------WPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFA--GGLEE 305 (538)
Q Consensus 234 ~~~~~~~GT~V~F------~PD~~~F~~~~~~~~~~i~~rl~elA~lnpgl~i~l~d~~~~~~~~~~~~f~~~--~Gl~~ 305 (538)
...++||+|+| +|++.+|.++..++++.|.++++++|++||+++|.|.++... ...|... +.+.+
T Consensus 143 --~~~~~GTtV~v~~LF~n~P~R~k~lk~~~~e~~~i~~~l~~~Al~~p~v~f~l~~~g~~-----~~~~~~~~~~~~~~ 215 (348)
T 3na3_A 143 --CAGNQGTQITVEDLFYNIATRRKALKNPSEEYGKILEVVGRYSVHNAGISFSVKKQGET-----VADVRTLPNASTVD 215 (348)
T ss_dssp --ECCCSEEEEEEESTTTTCHHHHHTSCCHHHHHHHHHHHHHHHHHHCTTCEEEEEETTCS-----SCSEECCTTCCHHH
T ss_pred --ecCCCCcEEEECcccccCchhhhhccccHHHHHHHHHHHHHHHhhCCCeEEEEEECCEE-----EEEeecCCCCCHHH
Confidence 24579999999 599999976667788999999999999999999999997521 1124433 35888
Q ss_pred HHHHHcCCCCCCCCeeEEEEecc--eeEEEEEE---EeccCCCCceEEEeeCceeccCCccchHHHHHHHHHHHHHHHHh
Q 009294 306 YVQWLNTDKKPLHDVVGFRKDVD--GITIDLAL---QWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKK 380 (538)
Q Consensus 306 yv~~l~~~~~~~~~~i~~~~~~~--~i~veval---~~s~~~~~~~~~SFVN~I~T~~GGTHv~g~~~al~k~in~~~kk 380 (538)
.+..+.+.. ...+.+.+..+.+ ++.++--+ .++ .....|+-|||+++..+- .|.++|++..+.
T Consensus 216 ~i~~i~G~~-~~~~l~~v~~~~~~~~~~i~G~is~p~~~--~~~~~q~~fVNgR~v~~~---------~l~~ai~~~y~~ 283 (348)
T 3na3_A 216 NIRSIFGNA-VSRELIEIGCEDKTLAFKMNGYISNANYS--VKKCIFLLFINHRLVEST---------SLRKAIETVYAA 283 (348)
T ss_dssp HHHHHHCHH-HHTTEEEEEEEEGGGTEEEEEEEECSSCC--BSSCEEEEEETTEECCCT---------THHHHHHHHHHT
T ss_pred HHHHHhChH-hHhhcEEEEeecCCccEEEEEEEeCCccC--CCcccEEEEECCeEecCH---------HHHHHHHHHHHH
Confidence 888776521 1123444544433 35555212 222 113468999999998774 455555544333
Q ss_pred cCCCCCcCCCCCHHhHhccceEEEEEeecCCCCC
Q 009294 381 SKTVKDKDISLSGEHVREGLTCIISVRVPNPEFE 414 (538)
Q Consensus 381 ~~~~k~~~~~l~~~dIregL~~~vsvki~nP~Fe 414 (538)
. +.+ ...=.+++++.++.-..|
T Consensus 284 ~--l~~----------~~~P~~~L~l~~~p~~vD 305 (348)
T 3na3_A 284 Y--LPK----------NTHPFLYLSLEISPQNVD 305 (348)
T ss_dssp T--SCT----------TCBCEEEEEEECC-----
T ss_pred h--CcC----------CCceEEEEEEEeChhhee
Confidence 1 111 023378888888755555
No 15
>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae}
Probab=99.96 E-value=3.2e-28 Score=254.42 Aligned_cols=283 Identities=16% Similarity=0.198 Sum_probs=194.5
Q ss_pred cceeccchhhhhhCCCeeeccCCCCchhHHHHHHHHhhHhhhccCCCCeEEEEEecCC--eEEEEECCCCccCCccCCCC
Q 009294 81 QIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLADN--SVSVADNGRGIPIDLHPATN 158 (538)
Q Consensus 81 ~i~~L~~lE~VrkRP~mYIGs~~~~gL~~lv~EivdNAiDe~~~g~~~~I~V~i~~dg--~isV~DnGrGIP~~~h~~~g 158 (538)
.|+.|+.--.-+.++|++|. .|.++|+|||+||+|+. ++.|.|.++.+| .|+|.|||+|||.+.++
T Consensus 5 ~I~~L~~~~~~~I~agevi~-----~~~~vv~eLv~NaiDA~----a~~I~I~i~~~~~~~i~V~DnG~Gi~~~~l~--- 72 (367)
T 3h4l_A 5 QIHQINDIDVHRITSGQVIT-----DLTTAVKELVDNSIDAN----ANQIEIIFKDYGLESIECSDNGDGIDPSNYE--- 72 (367)
T ss_dssp --------CTHHHHHHHHCC-----SHHHHHHHHHHHHHHTT----CSEEEEEEETTTTSEEEEEECSCCCCGGGTT---
T ss_pred cceeCCHHHHHHhcCCCccc-----CHHHHHHHHHHHHHHCC----CCEEEEEEEeCCEEEEEEEECCCCcChhHhc---
Confidence 58889888888888898864 57899999999999985 899999998766 79999999999999865
Q ss_pred cchHHHhhhhcccCCCCCCCCCCee-eccccccchhhHHHhhcCeEEEEEEeCC-EEEEEEEe-CCcccccceeeecCCC
Q 009294 159 KSALETVLTVLHAGGKFGGSSSGYS-VSGGLHGVGLSVVNALSESLEVTVWRDG-MEYHQKYS-RGKPVTTLTCHVLPVD 235 (538)
Q Consensus 159 ~~~~e~v~t~lhagskf~~~~~~yk-~sgG~~GvGls~vnalS~~~~V~t~~~g-~~y~q~f~-~G~~~~~~~~~~~~~~ 235 (538)
.+| ..|+++|+.+.++.+. .|+||||+|+++++++| +++|+|++++ ..|.++|. +|.+.... +
T Consensus 73 -----~~~-~~~~tsK~~~~~Dl~~i~t~GfrGeaL~Si~avS-~l~V~sr~~~~~~~~~~~~~~G~~~~~~-------~ 138 (367)
T 3h4l_A 73 -----FLA-LKHYTSKIAKFQDVAKVQTLGFRGEALSSLCGIA-KLSVITTTSPPKADKLEYDMVGHITSKT-------T 138 (367)
T ss_dssp -----TTT-CCEEC---------CCCCEEEETTHHHHHHHHSS-EEEEEEESSTTCEEEEEECTTCCEEEEE-------E
T ss_pred -----cce-eccccCcCCchhhhhhhhccCccchHHHHhhccC-EEEEEEEECCCCEEEEEEcCCCcEEeec-------c
Confidence 244 4599999876544554 79999999999999998 7999999887 78999997 67765422 2
Q ss_pred CCCCCCcEEEE------EeCccc-cccccccCHHHHHHHHHHHHhhCCCcEEEEeeCCCCCCCCceeEEeec--ccHHHH
Q 009294 236 SKDRQGTRIRF------WPDKQV-FTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFA--GGLEEY 306 (538)
Q Consensus 236 ~~~~~GT~V~F------~PD~~~-F~~~~~~~~~~i~~rl~elA~lnpgl~i~l~d~~~~~~~~~~~~f~~~--~Gl~~y 306 (538)
...++||+|+| +|++.+ |.++..+++..|.++++++|+++|+++|+|.+..... .....|... +.+.+.
T Consensus 139 ~~~~~GTtV~v~~LF~n~P~R~k~flk~~~~e~~~i~~~l~~~Al~~p~v~~~l~~~~~~~--~~~~~~~t~~~~~~~~~ 216 (367)
T 3h4l_A 139 TSRNKGTTVLVSQLFHNLPVRQKEFSKTFKRQFTKCLTVIQGYAIINAAIKFSVWNITPKG--KKNLILSTMRNSSMRKN 216 (367)
T ss_dssp ECCSSEEEEEEESTTTTCHHHHHHHHTTHHHHHHHHHHHHHHHHHHCTTCEEEEEEECTTS--CEEEEEECCSSCCHHHH
T ss_pred ccCCCCeEEEEchhhccCchhhhhhccchHHHHHHHHHHHHHHHhhCCCeEEEEEEcCCCC--cceEEEECCCCCCHHHH
Confidence 24579999999 599999 9766677889999999999999999999998743210 123445444 358888
Q ss_pred HHHHcCCCCCCCCeeEEEE-----------------------ecceeEEEEEEE---e-ccCCCCceEEEeeCceeccCC
Q 009294 307 VQWLNTDKKPLHDVVGFRK-----------------------DVDGITIDLALQ---W-CSDAYSDTMLGYANSIRTIDG 359 (538)
Q Consensus 307 v~~l~~~~~~~~~~i~~~~-----------------------~~~~i~veval~---~-s~~~~~~~~~SFVN~I~T~~G 359 (538)
+..+.+.. ...+.+.+.. +..++.++--+. + ..++..+.|+-|||+++...
T Consensus 217 i~~i~G~~-~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~is~p~~~~~r~~~~~q~~fVNgR~v~~- 294 (367)
T 3h4l_A 217 ISSVFGAG-GMRGLEEVDLVLDLNPFKNRMLGKYTDDPDFLDLDYKIRVKGYISQNSFGCGRNSKDRQFIYVNKRPVEY- 294 (367)
T ss_dssp HHHHHCTT-TTTTEEEEEEEEECGGGCCCCC------------CCEEEEEEEEECCSTTCSBSSSSSEEEEETTEEECC-
T ss_pred HHHHhCHH-HHhccEEEecccccccccccccccccccccccccCCcEEEEEEEeCCcccccCCCCCcEEEEECCCEecC-
Confidence 88887643 2223333333 234455552221 1 11233467999999999876
Q ss_pred ccchHHHHHHHHHHHHHHHHhcCCCCCcCCCCCHHhHhccceEEEEEeecCCCCC
Q 009294 360 GTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFE 414 (538)
Q Consensus 360 GTHv~g~~~al~k~in~~~kk~~~~k~~~~~l~~~dIregL~~~vsvki~nP~Fe 414 (538)
..|.++|++..+... + ...=.+++++.++.-.+|
T Consensus 295 --------~~l~~ai~~~y~~~~--~-----------~~~P~~~L~l~~~p~~vD 328 (367)
T 3h4l_A 295 --------STLLKCCNEVYKTFN--N-----------VQFPAVFLNLELPMSLID 328 (367)
T ss_dssp --------HHHHHHHHHHHHTTC--S-----------SCBCCEEEEEECCGGGEE
T ss_pred --------HHHHHHHHHHHHhcC--C-----------CCCcEEEEEEEcChHHcc
Confidence 356777766554421 1 123378888888755555
No 16
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A*
Probab=99.95 E-value=1.4e-27 Score=247.35 Aligned_cols=279 Identities=18% Similarity=0.235 Sum_probs=206.2
Q ss_pred cceeccchhhhhhCCCeeeccCCCCchhHHHHHHHHhhHhhhccCCCCeEEEEEecCC--eEEEEECCCCccCCccCCCC
Q 009294 81 QIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLADN--SVSVADNGRGIPIDLHPATN 158 (538)
Q Consensus 81 ~i~~L~~lE~VrkRP~mYIGs~~~~gL~~lv~EivdNAiDe~~~g~~~~I~V~i~~dg--~isV~DnGrGIP~~~h~~~g 158 (538)
.|+.|+.-..-+-.+|..| ..+.++++|||+||+|+. ++.|.|.++.+| .|+|.|||+|||.+.
T Consensus 4 ~I~~L~~~~~~~I~agevi-----~~~~~~v~ELi~NaidA~----a~~I~I~i~~~~~~~i~V~DnG~Gi~~~~----- 69 (333)
T 1b63_A 4 PIQVLPPQLANQIAAGEVV-----ERPASVVKELVENSLDAG----ATRIDIDIERGGAKLIRIRDNGCGIKKDE----- 69 (333)
T ss_dssp CCCCCCHHHHHHHHHHHHC-----SSHHHHHHHHHHHHHHTT----CSEEEEEEEGGGTSEEEEEECSCCCCGGG-----
T ss_pred cceECCHHHHHHHhcCCch-----hCHHHHHHHHHHHHHHCC----CCeEEEEEEeCCceEEEEEEcCCCcCHHH-----
Confidence 3888888888888888886 478999999999999986 889999999766 799999999999987
Q ss_pred cchHHHhhhhcccCCCCCCCCCCee-eccccccchhhHHHhhcCeEEEEEEeCC--EEEEEEEeCCcc-cccceeeecCC
Q 009294 159 KSALETVLTVLHAGGKFGGSSSGYS-VSGGLHGVGLSVVNALSESLEVTVWRDG--MEYHQKYSRGKP-VTTLTCHVLPV 234 (538)
Q Consensus 159 ~~~~e~v~t~lhagskf~~~~~~yk-~sgG~~GvGls~vnalS~~~~V~t~~~g--~~y~q~f~~G~~-~~~~~~~~~~~ 234 (538)
++.+|.+ |+++|+.+.++.+. .+.|++|+|+++++++| +++|+|++++ ..|.+ +.+|.. ..+..
T Consensus 70 ---l~~~~~~-~~tsK~~~~~d~~~~~~~G~~G~gl~si~~vs-~l~v~s~~~~~~~~~~~-~~~g~~~~~~~~------ 137 (333)
T 1b63_A 70 ---LALALAR-HATSKIASLDDLEAIISLGFRGEALASISSVS-RLTLTSRTAEQQEAWQA-YAEGRDMNVTVK------ 137 (333)
T ss_dssp ---HHHHHST-TCCSSCCSHHHHHTCCSSCCSSCHHHHHHTTS-EEEEEEECTTCSSEEEE-EEETTTTEEEEE------
T ss_pred ---HHHhhhc-ccccCccccchhhhccccCccccchhhhhcCC-cEEEEEecCCCceEEEE-EEcCCcceEeee------
Confidence 5667776 78889864222343 58899999999999998 8999999876 35666 555543 22222
Q ss_pred CCCCCCCcEEEEE------eCccccccccccCHHHHHHHHHHHHhhCCCcEEEEeeCCCCCCCCceeEEeecc-----cH
Q 009294 235 DSKDRQGTRIRFW------PDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAG-----GL 303 (538)
Q Consensus 235 ~~~~~~GT~V~F~------PD~~~F~~~~~~~~~~i~~rl~elA~lnpgl~i~l~d~~~~~~~~~~~~f~~~~-----Gl 303 (538)
+...++||+|+|+ |++.+|.++...+++.|.++++++|+++|+++|.|.+.. +..+.+++ ++
T Consensus 138 ~~~~~~GT~V~v~~Lf~n~P~r~kflk~~~~e~~~i~~~~~~~al~~p~v~~~l~~ng-------~~~~~~~~~~~~~~~ 210 (333)
T 1b63_A 138 PAAHPVGTTLEVLDLFYNTPARRKFLRTEKTEFNHIDEIIRRIALARFDVTINLSHNG-------KIVRQYRAVPEGGQK 210 (333)
T ss_dssp EECCCSEEEEEEESTTTTCHHHHHTCCCHHHHHHHHHHHHHHHHHHCTTCEEEEEETT-------EEEEEECCCCTTCCT
T ss_pred cccCCCCCEEEEecccccchhhhhhhccHHHHHHHHHHHHHHHhccCCCcEEEEEECC-------EEEEecCCCCCCchH
Confidence 1235799999999 999999765567788999999999999999999999864 35666654 68
Q ss_pred HHHHHHHcCCCCCCCCeeEEEEecceeEEEEEEEecc--CCC-CceEEEeeCceeccCCccchHHHHHHHHHHHHHHHHh
Q 009294 304 EEYVQWLNTDKKPLHDVVGFRKDVDGITIDLALQWCS--DAY-SDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKK 380 (538)
Q Consensus 304 ~~yv~~l~~~~~~~~~~i~~~~~~~~i~veval~~s~--~~~-~~~~~SFVN~I~T~~GGTHv~g~~~al~k~in~~~kk 380 (538)
.+++..+.+. ....+.+.+..+.+++.++..+.+.. .++ .+.|+.|||++++.+ ..|.++|++..+.
T Consensus 211 ~~~i~~i~G~-~~~~~li~i~~~~~~~~v~G~i~~p~~~~~~~~~~~~~fvNgR~V~~---------~~l~~ai~~~y~~ 280 (333)
T 1b63_A 211 ERRLGAICGT-AFLEQALAIEWQHGDLTLRGWVADPNHTTPALAEIQYCYVNGRMMRD---------RLINHAIRQACED 280 (333)
T ss_dssp HHHHHHHHCH-HHHHHEEEEEEEETTEEEEEEEECGGGCCTTGGGCEEEEETTEECCC---------HHHHHHHHHHHHH
T ss_pred HHHHHHHhCh-hhHhheEEEEecCCCEEEEEEEEcCccccCCCCCcEEEEECCEEecC---------HHHHHHHHHHHHh
Confidence 8888887752 22224567777777888886666652 244 578999999999976 3455555544332
Q ss_pred cCCCCCcCCCCCHHhHhccceEEEEEeecCCCCC
Q 009294 381 SKTVKDKDISLSGEHVREGLTCIISVRVPNPEFE 414 (538)
Q Consensus 381 ~~~~k~~~~~l~~~dIregL~~~vsvki~nP~Fe 414 (538)
. +.+. ..=.+++++.++.-..|
T Consensus 281 ~-l~~~-----------~~P~~~l~l~~~p~~vD 302 (333)
T 1b63_A 281 K-LGAD-----------QQPAFVLYLEIDPHQVD 302 (333)
T ss_dssp H-SSSC-----------CCCCEEEEEECCGGGEE
T ss_pred h-ccCC-----------CCcEEEEEEEeCchhcc
Confidence 2 1111 12257788888644444
No 17
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}
Probab=99.94 E-value=1.2e-28 Score=269.09 Aligned_cols=280 Identities=15% Similarity=0.170 Sum_probs=201.4
Q ss_pred ccceeccchhhhhhCCCeeeccCCCCchhHHHHHHHHhhHhhhccCC-CCeEEEEEecCC------eEEEEECCCCccCC
Q 009294 80 EQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGY-ASNIEVALLADN------SVSVADNGRGIPID 152 (538)
Q Consensus 80 ~~i~~L~~lE~VrkRP~mYIGs~~~~gL~~lv~EivdNAiDe~~~g~-~~~I~V~i~~dg------~isV~DnGrGIP~~ 152 (538)
++++.++..|+++++|+||+.+.+...|++++.|||+||+|+...|. ...|.|.+..++ .|+|.|||+|||.+
T Consensus 5 ~~~k~isi~eff~~~~~l~i~~~d~~~L~qvl~NLV~NAida~~~gg~~p~I~I~i~~~~~~~~~~~I~V~DnG~GI~~e 84 (530)
T 2zbk_B 5 EKFTSLSPAEFFKRNPELAGFPNPARALYQTVRELIENSLDATDVHGILPNIKITIDLIDDARQIYKVNVVDNGIGIPPQ 84 (530)
T ss_dssp ---------CGGGTCCGGGTCSSHHHHHHHHHHHHHHHHHTTTTTTTCCCCCEEEEEEEETTTTEEEEEEECCSCCCCGG
T ss_pred HHhhhcChhheeecCCCceEEcCcHHHHHHHHHHHHHHHHHHHhccCCCeEEEEEEEECCCcCceEEEEEEECCCCCCHH
Confidence 45677788899999999999887778999999999999999986541 237899888644 79999999999988
Q ss_pred ccCCCCcchHHHhhhhcccCCCCCCCCCCeeeccccccchhhHHHhhcC-----eEEEEEEeCCE--EEEEEE--e----
Q 009294 153 LHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSE-----SLEVTVWRDGM--EYHQKY--S---- 219 (538)
Q Consensus 153 ~h~~~g~~~~e~v~t~lhagskf~~~~~~yk~sgG~~GvGls~vnalS~-----~~~V~t~~~g~--~y~q~f--~---- 219 (538)
. ++.+|..+++++|+.. ..+.|.+|+|+++++.+++ +++|++..++. .+.+.+ .
T Consensus 85 ~--------l~~iF~~f~~tsk~~~-----~~~~gg~GLGLsiv~~l~~~~gG~~I~V~S~~~~g~~~~~~~Lpl~~~~~ 151 (530)
T 2zbk_B 85 E--------VPNAFGRVLYSSKYVN-----RQTRGMYGLGVKAAVLYSQMHQDKPIEIETSPVNSKRIYTFKLKIDINKN 151 (530)
T ss_dssp G--------SHHHHTSCCCSCCCCC-----SCCSCSSSSHHHHHHHHHHHHCCCCEEEEEECTTCSEEEEEEEEEETTTT
T ss_pred H--------HHHHhccccccCCccc-----ccCCCCccchHHHHHHHHHHhCCCceEEEEecCCCeEEEEEEEEeccccc
Confidence 7 4568999889998742 3577889999999999998 68998887642 444433 2
Q ss_pred CCcccccceeeecCCCCCCCCCcEEEEEeCccccccccccCH-HHHHHHHHHHHhhCCCcEEEEeeCCCCCCCCceeEEe
Q 009294 220 RGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDH-NTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYF 298 (538)
Q Consensus 220 ~G~~~~~~~~~~~~~~~~~~~GT~V~F~PD~~~F~~~~~~~~-~~i~~rl~elA~lnpgl~i~l~d~~~~~~~~~~~~f~ 298 (538)
.|.. .+.... . .....+||+|+|+ |..+ .++. ..|.++++++|++||+++|.|.+++ .+.|.
T Consensus 152 ~g~~-~~~~~~--~-~~~~~~GT~V~v~-----l~~~-~~e~~~~i~~~l~~~Al~~p~v~~~l~~~~-------~~~~~ 214 (530)
T 2zbk_B 152 EPII-VERGSV--E-NTRGFHGTSVAIS-----IPGD-WPKAKSRIYEYIKRTYIITPYAEFIFKDPE-------GNVTY 214 (530)
T ss_dssp EEEE-EEEEEE--E-CCSSCCEEEEEEE-----EECC-HHHHHHHHHHHHHHHHHHCTTCCEEEECTT-------SCEEE
T ss_pred CCcc-cccccc--C-CCCCCCCcEEEEE-----eccc-hhhHHHHHHHHHHHHHHHCCCcEEEEEECC-------CeEEE
Confidence 2222 122211 0 1235789999998 5332 3455 7899999999999999999999875 35677
Q ss_pred ecccHHHHHHHHcCCCCCCCC-eeEEEEecceeEEEEEEE-eccCCCCc-eEEEeeCceeccCCccchHHHHHHHHHHHH
Q 009294 299 FAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITIDLALQ-WCSDAYSD-TMLGYANSIRTIDGGTHIEGVKASLTRTLN 375 (538)
Q Consensus 299 ~~~Gl~~yv~~l~~~~~~~~~-~i~~~~~~~~i~veval~-~s~~~~~~-~~~SFVN~I~T~~GGTHv~g~~~al~k~in 375 (538)
+++.. ..+++ +.....+..|+.++.+++ |. .++.. ++.+|+|+++|..||+|+++|.+++
T Consensus 215 ~~~~~-----------~~lp~~~~~~~~~~~Gi~~~~~l~~~~-~~~~~~~l~~fl~~~ft~~g~~~a~~~~~~~----- 277 (530)
T 2zbk_B 215 YPRLT-----------NKIPKPPQEVKPHPYGVDREEIKILIN-NLKRDYTIKEFLVNEFQSIGDTTADKILELA----- 277 (530)
T ss_dssp ECCCC-----------CCCCCCCCCCCCCGGGCCHHHHHHHHT-TCSSCCBHHHHHHTTSTTCCHHHHHHHHHHT-----
T ss_pred ecCcc-----------ccccCCcceeccCCCChhHHHHHHHHh-ccCCCceeHhhhcCccccccHHHHHHHHHhh-----
Confidence 77621 11111 122234556777766665 54 55666 7899999999999999999999864
Q ss_pred HHHHhcCCCCCc-CCCCCHHhHhccceEEEEEe-ecCCC
Q 009294 376 SLGKKSKTVKDK-DISLSGEHVREGLTCIISVR-VPNPE 412 (538)
Q Consensus 376 ~~~kk~~~~k~~-~~~l~~~dIregL~~~vsvk-i~nP~ 412 (538)
++.++. +.+++++|++++|.++++++ +++|.
T Consensus 278 ------gl~~~~~~~~l~~~~~~~ll~a~~~~k~~~~P~ 310 (530)
T 2zbk_B 278 ------GLKPNKKVKNLTEEEITRLVETFKKDEDFRSPS 310 (530)
T ss_dssp ------TCCSSCBSSCCCHHHHHHHHHHHHHCCCCCCCC
T ss_pred ------CCCCCCCcccCCHHHHHHHHHHHHhccCCCCCC
Confidence 444443 45899999999999999998 66664
No 18
>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A*
Probab=99.94 E-value=3.3e-26 Score=239.65 Aligned_cols=284 Identities=16% Similarity=0.216 Sum_probs=181.5
Q ss_pred ccceeccchhhhhhCCCeeeccCCCCchhHHHHHHHHhhHhhhccCCCCeEEEEEecCC--eEEEEECCCCccCCccCCC
Q 009294 80 EQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLADN--SVSVADNGRGIPIDLHPAT 157 (538)
Q Consensus 80 ~~i~~L~~lE~VrkRP~mYIGs~~~~gL~~lv~EivdNAiDe~~~g~~~~I~V~i~~dg--~isV~DnGrGIP~~~h~~~ 157 (538)
..|+.|+....-+.++|++| ..+.++++|||+||+|+. ++.|.|.+..+| .|+|.|||+|||.+..+
T Consensus 13 ~~I~~L~~~~~~~i~agevi-----~~~~~vl~eLv~NAiDA~----a~~I~I~i~~~~~~~I~V~DnG~Gi~~~~l~-- 81 (365)
T 1h7s_A 13 KAIKPIDRKSVHQICSGQVV-----LSLSTAVKELVENSLDAG----ATNIDLKLKDYGVDLIEVSDNGCGVEEENFE-- 81 (365)
T ss_dssp ----------------CEEE-----CCHHHHHHHHHHHHHHTT----CSEEEEEEEGGGTSEEEEEECSCCCCGGGSG--
T ss_pred hhhccCCHHHHHHhcCCCch-----hhHHHHHHHHHHHHHHCC----CCEEEEEEEeCCcEEEEEEECCCCcCHHHHH--
Confidence 35999999999999999996 457999999999999986 789999998655 79999999999998754
Q ss_pred CcchHHHhhhhcccCCCCCCCCCCee-eccccccchhhHHHhhcCeEEEEEEeCCE--EEEEEEe-CCcccccceeeecC
Q 009294 158 NKSALETVLTVLHAGGKFGGSSSGYS-VSGGLHGVGLSVVNALSESLEVTVWRDGM--EYHQKYS-RGKPVTTLTCHVLP 233 (538)
Q Consensus 158 g~~~~e~v~t~lhagskf~~~~~~yk-~sgG~~GvGls~vnalS~~~~V~t~~~g~--~y~q~f~-~G~~~~~~~~~~~~ 233 (538)
.+|.. |+++|+.+.++.|. .++|+||+|+++++++| +++|+|++++. .|.++|. +|..... .
T Consensus 82 ------~~f~~-~~tsK~~~~~dl~~i~s~G~rG~gl~si~~vs-~v~v~t~~~~~~~~~~~~~~~~G~~~~~-~----- 147 (365)
T 1h7s_A 82 ------GLTLK-HHTSKIQEFADLTQVETFGFRGEALSSLCALS-DVTISTCHASAKVGTRLMFDHNGKIIQK-T----- 147 (365)
T ss_dssp ------GGGC-----------CCTTCSEEESSSSSHHHHHHHHS-EEEEEEECTTCSSCEEEEECTTSCEEEE-E-----
T ss_pred ------HHhhh-ccccccccccchhcccccCCCCchhhhhhhhc-cEEEEEccCCCcceEEEEEcCCCceEee-c-----
Confidence 35665 78889876444666 68999999999999999 99999998765 7999997 5765431 1
Q ss_pred CCCCCCCCcEEEEE------eCccc-cccccccCHHHHHHHHHHHHhhCCCcEEEEeeCCCCCCCCceeEEeecc--cHH
Q 009294 234 VDSKDRQGTRIRFW------PDKQV-FTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAG--GLE 304 (538)
Q Consensus 234 ~~~~~~~GT~V~F~------PD~~~-F~~~~~~~~~~i~~rl~elA~lnpgl~i~l~d~~~~~~~~~~~~f~~~~--Gl~ 304 (538)
+...++||+|+|+ |.+.+ |.++...+++.|.++++++|+++|+++|.|.+++... .....|..++ ++.
T Consensus 148 -~~~~~~GT~V~v~~LF~n~P~R~k~flk~~~~e~~~i~~~v~~~al~~p~v~f~l~~~~~~~--~~~~~~~~~~~~~~~ 224 (365)
T 1h7s_A 148 -PYPRPRGTTVSVQQLFSTLPVRHKEFQRNIKKEYAKMVQVLHAYCIISAGIRVSCTNQLGQG--KRQPVVCTGGSPSIK 224 (365)
T ss_dssp -ECCCCSEEEEEEESTTTTSHHHHHHHHHTHHHHHHHHHHHHHHHHHHCTTCEEEEEEECTTS--CEEEEEECCCCSSHH
T ss_pred -ccCCCCCcEEEEeecccccchhhhhhccchHHHHHHHHHhhhhhhhcCCceEEEEEecCCCC--cEEEEEEcCCCchHH
Confidence 2345789999998 43333 6444456788999999999999999999999876321 1245677764 699
Q ss_pred HHHHHHcCCCCCCCCeeEEEEe------------------cceeEEEEEEEecc----CCCCceEEEeeCceeccCCccc
Q 009294 305 EYVQWLNTDKKPLHDVVGFRKD------------------VDGITIDLALQWCS----DAYSDTMLGYANSIRTIDGGTH 362 (538)
Q Consensus 305 ~yv~~l~~~~~~~~~~i~~~~~------------------~~~i~veval~~s~----~~~~~~~~SFVN~I~T~~GGTH 362 (538)
+++..+.+.. ...+.+.+... ..++.++--+.-.. ++....|+-|||+++...
T Consensus 225 ~~i~~i~G~~-~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~G~i~~p~~~~~r~~~~~q~~fvNgR~v~~---- 299 (365)
T 1h7s_A 225 ENIGSVFGQK-QLQSLIPFVQLPPSDSVCEEYGLSCSDALHNLFYISGFISQCTHGVGRSSTDRQFFFINRRPCDP---- 299 (365)
T ss_dssp HHHHHHHCHH-HHHTEEECCCCCCCHHHHHHHTCCTTTTTSCCCEEEEEEECCSTTTSBSSSTTEEEEETTEEECC----
T ss_pred HHHHHhcChH-hHhceEEEeccCCcccccccccccccccccccEEEEEEEeCcccccccCCCcceEEEECCeEecC----
Confidence 9988876531 11112222111 13455552221111 223467899999999875
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCCCcCCCCCHHhHhccceEEEEEeecCCCCC
Q 009294 363 IEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFE 414 (538)
Q Consensus 363 v~g~~~al~k~in~~~kk~~~~k~~~~~l~~~dIregL~~~vsvki~nP~Fe 414 (538)
..|.++|++..+... .. ..=.+++++.++.-.+|
T Consensus 300 -----~~l~~ai~~~y~~~~--~~-----------~~P~~~L~l~~~p~~vD 333 (365)
T 1h7s_A 300 -----AKVCRLVNEVYHMYN--RH-----------QYPFVVLNISVDSECVD 333 (365)
T ss_dssp -----HHHHHHHHHHHHTTC--TT-----------CBCCEEEEEECCGGGEE
T ss_pred -----HHHHHHHHHHHHhhC--cc-----------CCcEEEEEEEeChHHcc
Confidence 346666766544321 10 34478888888744444
No 19
>3k9f_C DNA topoisomerase 4 subunit B; quinolone, topoisomerase, protein-DNA cleavage complex; HET: DNA LFX; 2.90A {Streptococcus pneumoniae} PDB: 3fof_C* 3foe_C* 3ksa_C* 3ksb_C* 3ltn_C* 3rad_C* 3rae_C* 3raf_C*
Probab=99.93 E-value=1.3e-27 Score=233.47 Aligned_cols=66 Identities=47% Similarity=0.724 Sum_probs=50.5
Q ss_pred HHhhccccccCCCCCCCCCCCCCCCCceEEEEEeCCCCcccccccCCCCceEeeccCccccccccCC
Q 009294 472 LVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQVIINPLQESIFAFASA 538 (538)
Q Consensus 472 ~~~~k~~~~~~~lpgKL~Dc~~~~~~~~eL~lvEGDSA~Gsak~gRdr~~qail~PLrGKiLNv~ka 538 (538)
..|||+.++...|||||+||+++||++|||||||||||||||||||||+||||| |||||||||++|
T Consensus 21 ~~rrk~~~~~~~lpgKLaDc~~kd~~~~eLflvEGDSAgGsakqgRdr~~Qail-PLRGKiLNv~ka 86 (268)
T 3k9f_C 21 DKHMKNKKDKGLLSGKLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAIL-PLRGKVINTAKA 86 (268)
T ss_dssp ---------------CCBCCSSCCTTSCEEEEEECHHHHHHHHHSSCTTTEEEE-EECSSCCCTTSS
T ss_pred hhhhhhccccCCCCccccCcccCCCCceeEEEeeeecccccccccCcccccccc-ccCCcchhhhcC
Confidence 456788888899999999999999999999999999999999999999999999 999999999997
No 20
>3nuh_B DNA gyrase subunit B; topoisomerase, supercoiling, specialization, isomera; HET: DNA; 3.10A {Escherichia coli}
Probab=99.92 E-value=3.2e-27 Score=243.76 Aligned_cols=70 Identities=53% Similarity=0.881 Sum_probs=46.8
Q ss_pred HHHHHHhhccccccCCCCCCCCCCCCCCCCceEEEEEeCCCCcccccccCCCCceEeeccCccccccccCC
Q 009294 468 RARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQVIINPLQESIFAFASA 538 (538)
Q Consensus 468 kar~~~~~k~~~~~~~lpgKL~Dc~~~~~~~~eL~lvEGDSA~Gsak~gRdr~~qail~PLrGKiLNv~ka 538 (538)
+||+++|||+.+....|||||+||+++||++|||||||||||||||||||||+||||| |||||||||+||
T Consensus 3 ~are~~rrk~~~~~~~lpgKLaDc~~kd~~~~eLflvEGDSAgGsak~gRdr~~qail-PLrGKiLNv~ka 72 (420)
T 3nuh_B 3 AAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAIL-PLKGKILNVEKA 72 (420)
T ss_dssp ---------------CCBTTBBCCSCCSTTSCEEEEEEHHHHHHHHHHHSCTTTEEEE-EECC--------
T ss_pred HHHHHHHhhcccccCCCCccccccccCCccceeEEEEecccccccccccccccccccc-ccCCcchhHhhc
Confidence 5788999999888899999999999999999999999999999999999999999999 999999999986
No 21
>2xkj_E Topoisomerase IV; type IIA topoisomerase; 2.20A {Acinetobacter baumannii} PDB: 2xkk_A*
Probab=99.91 E-value=6e-26 Score=252.27 Aligned_cols=82 Identities=48% Similarity=0.756 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCCCCCCCCCCceEEEEEeCCCCcccccccCCCCceEeeccCcccc
Q 009294 453 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQVIINPLQESI 532 (538)
Q Consensus 453 ~~~~~~~~ka~~aakkar~~~~~k~~~~~~~lpgKL~Dc~~~~~~~~eL~lvEGDSA~Gsak~gRdr~~qail~PLrGKi 532 (538)
+++++.+++||++++++ .+||+.+....|||||+||+++|+++|||||||||||||||||||||+||||| ||||||
T Consensus 1 ~~k~~~~~~ar~~~~~~---~~rk~~~~~~~lpgKL~dc~~~~~~~~eL~lvEGDSAgGsak~gRdr~~qail-PLRGKi 76 (767)
T 2xkj_E 1 MEMAISKAGRRLKAAKK---VERKKIVSGPALPGKLADCVGQTREESELFIVEGDSAGGSAKQARDKNFQAIM-PIRGKI 76 (767)
T ss_dssp ---------------------CCCCCSSSCSSTTTCBCCCC-CGGGCEEEEEEHHHHHHHHHHHSCTTTEEEE-EESSCC
T ss_pred ChHHHHHHHHHHHHHHH---hhhccccccccCcHhhHhcccCCCcceEEEEeeCCCCcchhhhcCCccccccc-ccccch
Confidence 35778888888755443 34677888889999999999999999999999999999999999999999999 999999
Q ss_pred ccccCC
Q 009294 533 FAFASA 538 (538)
Q Consensus 533 LNv~ka 538 (538)
|||+||
T Consensus 77 LNv~ka 82 (767)
T 2xkj_E 77 LNTWEV 82 (767)
T ss_dssp CCCTTS
T ss_pred hhhhcC
Confidence 999997
No 22
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Probab=99.85 E-value=4.5e-20 Score=199.09 Aligned_cols=183 Identities=19% Similarity=0.246 Sum_probs=135.9
Q ss_pred ccceeccchhhhhhCCCeeeccCCCCchhHHHHHHHHhhHhhhccC-CCCeEEEEEecCC------eEEEEECCCCccCC
Q 009294 80 EQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAG-YASNIEVALLADN------SVSVADNGRGIPID 152 (538)
Q Consensus 80 ~~i~~L~~lE~VrkRP~mYIGs~~~~gL~~lv~EivdNAiDe~~~g-~~~~I~V~i~~dg------~isV~DnGrGIP~~ 152 (538)
++++.++..|.++++|+||+.+.+...|++++.|||+||+|+...| ....|.|.+..++ .|+|+|||+|||.+
T Consensus 6 ~~~k~is~~eff~~~~~~~~~~~d~~~L~qvl~nLv~NAida~~~gg~~p~I~I~i~~~~~~~~~~~I~V~DnG~GI~~e 85 (471)
T 1mu5_A 6 EKFTSLSPAEFFKRNPELAGFPNPARALYQTVRELIENSLDATDVHGILPNIKITIDLIDDARQIYKVNVVDNGIGIPPQ 85 (471)
T ss_dssp -----CCHHHHHHHCGGGTTCSSHHHHHHHHHHHHHHHHHHTTGGGTCCCEEEEEEEEEETTTTEEEEEEECCSCCCCGG
T ss_pred HHHhhcCHHHhhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHhhcCCCceEEEEEEEECCCcCcEEEEEEEECCCCCCHH
Confidence 4677788899999999999999988999999999999999998654 2337999988643 69999999999988
Q ss_pred ccCCCCcchHHHhhhhcccCCCCCCCCCCeeeccccccchhhHHHhhcCe-----EEEEEEeCCE--EEEEEEe------
Q 009294 153 LHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSES-----LEVTVWRDGM--EYHQKYS------ 219 (538)
Q Consensus 153 ~h~~~g~~~~e~v~t~lhagskf~~~~~~yk~sgG~~GvGls~vnalS~~-----~~V~t~~~g~--~y~q~f~------ 219 (538)
. ++.+|..+++++|+.. + .+.|.+|+|+++++.+++. ++|++..++. .+.+++.
T Consensus 86 ~--------l~~iF~~f~~tsk~~~----~-~~~gg~GLGL~iv~~l~~~~gG~~i~v~S~~~~g~~~~~~~Lpl~~~~~ 152 (471)
T 1mu5_A 86 E--------VPNAFGRVLYSSKYVN----R-QTRGMYGLGVKAAVLYSQMHQDKPIEIETSPVNSKRIYTFKLKIDINKN 152 (471)
T ss_dssp G--------HHHHHHCCCCC-CCCC----S-CCSCSCTTTHHHHHHHHHHHCCCCEEEEEECTTCSEEEEEEEEECTTTC
T ss_pred H--------HHHHhccccccccccc----c-cCCCCceeeHHHHHHHHHHhCCCceeEEEecCCCceEEEEEEecccccc
Confidence 7 5678999889988742 1 2445699999999999987 8998887642 4444432
Q ss_pred CCcccccceeeecCCCCCCCCCcEEEEEeCccccccccccCH-HHHHHHHHHHHhhCCCcEEEEeeC
Q 009294 220 RGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDH-NTIAGRIRELAFLNPKLTIALRKE 285 (538)
Q Consensus 220 ~G~~~~~~~~~~~~~~~~~~~GT~V~F~PD~~~F~~~~~~~~-~~i~~rl~elA~lnpgl~i~l~d~ 285 (538)
.|..... .+. + .....+||+|+|+ |..+ ..+. +.|.++++++|+++|+++|.|.++
T Consensus 153 ~g~~~~~-~~~--~-~~~~~~GT~V~v~-----l~~~-~~e~~~~I~~~l~~~al~~p~v~i~l~~~ 209 (471)
T 1mu5_A 153 EPIIVER-GSV--E-NTRGFHGTSVAIS-----IPGD-WPKAKSRIYEYIKRTYIITPYAEFIFKDP 209 (471)
T ss_dssp CEEEEEE-EEE--E-CCTTCCEEEEEEE-----EECC-HHHHHHHHHHHHHHHHHHCTTCEEEEECT
T ss_pred CCccccc-ccc--c-CCCCCCCEEEEEE-----EcCC-cchHHHHHHHHHHHHHhHCCCeEEEEEEC
Confidence 2333221 111 0 1245789999998 5332 2344 689999999999999999999986
No 23
>3qx3_A DNA topoisomerase 2-beta; toprim domain, winged-helix domain, coiled-coil domain, DNA and cleavage, nucleus; HET: DNA EVP; 2.16A {Homo sapiens} PDB: 4fm9_A*
Probab=99.72 E-value=8.9e-19 Score=193.48 Aligned_cols=53 Identities=36% Similarity=0.574 Sum_probs=49.9
Q ss_pred CCCCCCCCCC---CCCCCCceEEEEEeCCCCc-----ccccccCCCCceEeeccCccccccccCC
Q 009294 482 SSLPGKLADC---SSTTPEESEIFIVEGDSAG-----GSAKQGRDRRFQVIINPLQESIFAFASA 538 (538)
Q Consensus 482 ~~lpgKL~Dc---~~~~~~~~eL~lvEGDSA~-----Gsak~gRdr~~qail~PLrGKiLNv~ka 538 (538)
.+|| ||+|| +++||++|||||||||||| ||||||||| |||| |||||||||++|
T Consensus 34 ~~lp-KL~Dan~a~~kd~~~~eLflvEGDSAg~~a~sGsak~gRdr--~ail-PLRGKiLNv~ka 94 (803)
T 3qx3_A 34 KGIP-KLDDANDAGGKHSLECTLILTEGDSAKSLAVSGLGVIGRDR--YGVF-PLRGKILNVREA 94 (803)
T ss_dssp CCCT-TCBCCTTTTSTTGGGCEEEEEEHHHHHHHHHTTSTTGGGTT--EEEE-EECSSCCCCTTC
T ss_pred CCCC-ccccccccccCChhheEEEEecCCcchhhhhcccceecccc--cccc-cccCcchhhhhc
Confidence 4688 99999 5899999999999999999 999999998 8999 999999999997
No 24
>3l4j_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, covalently linked comple supercoiling; HET: DNA PTR TSP; 2.48A {Saccharomyces cerevisiae} SCOP: e.11.1.1 PDB: 3l4k_A* 1bjt_A 1bgw_A 2rgr_A*
Probab=99.58 E-value=1.2e-16 Score=176.21 Aligned_cols=47 Identities=23% Similarity=0.316 Sum_probs=43.7
Q ss_pred CCCCCCCceEEEEEeCCCCcccccccCC---CCceEeeccCccccccccCC
Q 009294 491 CSSTTPEESEIFIVEGDSAGGSAKQGRD---RRFQVIINPLQESIFAFASA 538 (538)
Q Consensus 491 c~~~~~~~~eL~lvEGDSA~Gsak~gRd---r~~qail~PLrGKiLNv~ka 538 (538)
++++||++|||||||||||||||+|||+ |+||||| |||||||||++|
T Consensus 15 a~~k~~~~~el~lvEGDSAggsak~gr~~~gR~~qail-PLrGKiLNv~ka 64 (757)
T 3l4j_A 15 AGTKEGYKCTLVLTEGDSALSLAVAGLAVVGRDYYGCY-PLRGKMLNVREA 64 (757)
T ss_dssp SSSTTTTTCEEEEEEHHHHHHHHHHHHHHHCSTTEEEE-EECSSCCCCTTC
T ss_pred ccCCCccceEEEEeecccchhhHhhcccccCccccccc-ccCCcccchhhc
Confidence 3589999999999999999999998884 8899999 999999999997
No 25
>2xcs_B DNA gyrase subunit B, DNA gyrase subunit A; isomerase, type IIA topoisomerase; HET: DNA 5UA RXV; 2.10A {Staphylococcus aureus} PDB: 2xct_B* 2xcr_B* 2xcq_A* 2xco_A*
Probab=99.46 E-value=6.4e-15 Score=162.40 Aligned_cols=45 Identities=73% Similarity=1.145 Sum_probs=38.6
Q ss_pred cCCCCCCCCCCCCCCCCceEEEEEeCCCCcccccccCCCCceEee
Q 009294 481 SSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQVII 525 (538)
Q Consensus 481 ~~~lpgKL~Dc~~~~~~~~eL~lvEGDSA~Gsak~gRdr~~qail 525 (538)
...|||||+||+++|+++|||||||||||||||||||||+|||||
T Consensus 3 ~~~lpgkl~dc~~~~~~~~eL~lvEGDSA~Gsak~gRd~~~qai~ 47 (692)
T 2xcs_B 3 VASLPGKLADCSSKSPEECEIFLVEGDSAGGSTKSGRDSRTQAIL 47 (692)
T ss_dssp ------CCBCCSCCCTTTCEEEEESSHHHHHHHHHHSCTTTEEEE
T ss_pred CCCCCchhhcCCCCCcccceEEEecCCcccCcccccccccccccc
Confidence 357999999999999999999999999999999999999999997
No 26
>3t0h_A Heat shock protein HSP 90-alpha; chaperone, ATPase; 1.20A {Homo sapiens} SCOP: d.122.1.1 PDB: 3r4m_A 3t0z_A* 3t10_A* 3t1k_A* 3t2s_A* 1uyl_A 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A* 1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A* 2vci_A* ...
Probab=99.33 E-value=4.5e-12 Score=124.17 Aligned_cols=158 Identities=18% Similarity=0.228 Sum_probs=104.4
Q ss_pred hhHHHHHHHHhhHhhhcc-------C-------CCCeEEEEEec-CCeEEEEECCCCccCCccCCCCcchHHHhhhhccc
Q 009294 107 LHHLVYEILDNAVDEAQA-------G-------YASNIEVALLA-DNSVSVADNGRGIPIDLHPATNKSALETVLTVLHA 171 (538)
Q Consensus 107 L~~lv~EivdNAiDe~~~-------g-------~~~~I~V~i~~-dg~isV~DnGrGIP~~~h~~~g~~~~e~v~t~lha 171 (538)
-...++|||.||+|+... + ..-.|.|.++. ...|+|.|||.||+.+. ++..|++ |+
T Consensus 33 ~~~~lrELi~NA~DA~~k~r~~~~~~~~~~~~~~~i~I~I~~d~~~~~i~V~DnG~GMs~ed--------l~~~l~~-ia 103 (228)
T 3t0h_A 33 KEIFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMTKAD--------LINNLGT-IA 103 (228)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHTTCGGGGTTCCCCCEEEEEETTTTEEEEEECSCCCCHHH--------HHTGGGS-CH
T ss_pred cHHHHHHHHHCHHHHHHHHHhhhccCcccccCCCceEEEEEEeCCeeEEEEEeCCCCCCHHH--------HHHHHHh-hc
Confidence 367899999999999742 1 12245565554 34899999999999876 3334554 33
Q ss_pred CCC---CCCC--CCCeeeccccccchhhHHHhhcCeEEEEEEeCC-EEEEEEEeCCcccccceeeecCCCCCCCCCcEEE
Q 009294 172 GGK---FGGS--SSGYSVSGGLHGVGLSVVNALSESLEVTVWRDG-MEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIR 245 (538)
Q Consensus 172 gsk---f~~~--~~~yk~sgG~~GvGls~vnalS~~~~V~t~~~g-~~y~q~f~~G~~~~~~~~~~~~~~~~~~~GT~V~ 245 (538)
.|+ |.+. +..-..+.|++|+|+.++-++|.+++|.|+..+ ..|.+++..|... .+.+. + ....++||+|+
T Consensus 104 ~S~~~~f~~~l~~~~~~~~iG~fG~G~~S~~~vad~v~V~Sr~~~~~~~~w~~~g~~~~-~v~~~--~-~~~~~~GT~I~ 179 (228)
T 3t0h_A 104 KSGTKAFMEALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSF-TVRTD--T-GEPMGRGTKVI 179 (228)
T ss_dssp HHHHHHHHHHHHTTCCGGGGGGGTCGGGGGGGTEEEEEEEEECTTSCEEEEEECSTTEE-EEEEC--C-SSCCSSEEEEE
T ss_pred cccchhhhhhhcccCCcccCCCCChhHHHHhccCCEEEEEEecCCCCcEEEEEcCCceE-EEeec--C-CCCCCCCcEEE
Confidence 332 2110 001145889999999999999999999998754 5688887776532 12211 1 23457999999
Q ss_pred EEeCccccccc--cccCHHHHHHHHHHHH--hhCCCcEEEEeeC
Q 009294 246 FWPDKQVFTTA--IQFDHNTIAGRIRELA--FLNPKLTIALRKE 285 (538)
Q Consensus 246 F~PD~~~F~~~--~~~~~~~i~~rl~elA--~lnpgl~i~l~d~ 285 (538)
+. .... .-++...|.+.++++| +.+| |++..+
T Consensus 180 v~-----Lk~~~~E~~e~~~i~~iv~~~a~~l~~P---i~~~~~ 215 (228)
T 3t0h_A 180 LH-----LKEDQTEYLEERRIKEIVKKHSQFIGYP---ITLFVE 215 (228)
T ss_dssp EE-----ECGGGGGGGSHHHHHHHHHHHSTTCSSC---EEECCC
T ss_pred EE-----ECCchhhhhhHHHHHHHHHHHHhhCCCC---eEEeec
Confidence 98 2211 1134578999999999 6666 555443
No 27
>3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A* 2fwy_A* 2h55_A*
Probab=99.30 E-value=8.1e-12 Score=123.95 Aligned_cols=160 Identities=19% Similarity=0.247 Sum_probs=106.2
Q ss_pred hHHHHHHHHhhHhhhcc--------------CCCCeEEEEEec-CCeEEEEECCCCccCCccCCCCcchHHHhhhhcccC
Q 009294 108 HHLVYEILDNAVDEAQA--------------GYASNIEVALLA-DNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAG 172 (538)
Q Consensus 108 ~~lv~EivdNAiDe~~~--------------g~~~~I~V~i~~-dg~isV~DnGrGIP~~~h~~~g~~~~e~v~t~lhag 172 (538)
...++|||.||+|+... +..-.|.|.++. ...|+|.|||.||+.+. ++..|+++-++
T Consensus 62 ~iflRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~I~I~DnG~GMt~ed--------l~~~l~~ia~S 133 (256)
T 3o0i_A 62 EIFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMTKAD--------LINNLGTIAKS 133 (256)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHCGGGGTTCCCCCEEEEEETTTTEEEEEECSCCCCHHH--------HHTHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHhccCchhccCCCceEEEEEEcCCceEEEEecCCCCcCHHH--------HHHHHHhhccc
Confidence 57899999999999742 112256666664 34899999999999876 33345542222
Q ss_pred CC--CCCC--CCCeeeccccccchhhHHHhhcCeEEEEEEeCC-EEEEEEEeCCcccccceeeecCCCCCCCCCcEEEEE
Q 009294 173 GK--FGGS--SSGYSVSGGLHGVGLSVVNALSESLEVTVWRDG-MEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFW 247 (538)
Q Consensus 173 sk--f~~~--~~~yk~sgG~~GvGls~vnalS~~~~V~t~~~g-~~y~q~f~~G~~~~~~~~~~~~~~~~~~~GT~V~F~ 247 (538)
++ |.+. ...-..+.|++|+|+.++-++|.+++|.|+.++ ..|..+...|... .+.+. + +...++||+|++.
T Consensus 134 ~~~~f~~~L~~~~~~~~iG~fG~Gf~S~f~Vadkv~V~Sr~~~~~g~~w~s~gg~~~-~v~~~--~-~~~~~~GT~I~l~ 209 (256)
T 3o0i_A 134 GTKAFMEALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSF-TVRTD--T-GEPMGRGTKVILH 209 (256)
T ss_dssp HHHHHHHHHHTTCCGGGGGGGTCGGGGGGGTEEEEEEEEECTTSCEEEEEECSTTEE-EEEEC--C-SSCCSSEEEEEEE
T ss_pred cccchhhhhcccCCccccCCCcchHHHhhccCCeEEEEEcCCCCceEEEEEeccceE-EEeeC--C-CCCCCCCcEEEEE
Confidence 22 2110 001246899999999999999999999998654 5687777766532 12211 1 2345799999998
Q ss_pred eCccccccccccCHHHHHHHHHHHH--hhCCCcEEEEeeC
Q 009294 248 PDKQVFTTAIQFDHNTIAGRIRELA--FLNPKLTIALRKE 285 (538)
Q Consensus 248 PD~~~F~~~~~~~~~~i~~rl~elA--~lnpgl~i~l~d~ 285 (538)
.++....-++...|.+.++++| +.+| |++..+
T Consensus 210 ---LK~~~~e~~e~~~I~~iv~k~s~~l~~P---I~~~~~ 243 (256)
T 3o0i_A 210 ---LKEDQTEYLEERRIKEIVKKHSQFIGYP---ITLFVE 243 (256)
T ss_dssp ---ECGGGGGGGCHHHHHHHHHHHCTTCSSC---EEECCC
T ss_pred ---EcCcchhhccHHHHHHHHHHHHhhCCCC---eEEeee
Confidence 3343332346678999999999 6676 455443
No 28
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A
Probab=99.29 E-value=4.5e-11 Score=130.84 Aligned_cols=154 Identities=21% Similarity=0.303 Sum_probs=104.1
Q ss_pred hhHHHHHHHHhhHhhhcc--------------CCCCeEEEEEecC-CeEEEEECCCCccCCccCCCCcchHHHhhhhccc
Q 009294 107 LHHLVYEILDNAVDEAQA--------------GYASNIEVALLAD-NSVSVADNGRGIPIDLHPATNKSALETVLTVLHA 171 (538)
Q Consensus 107 L~~lv~EivdNAiDe~~~--------------g~~~~I~V~i~~d-g~isV~DnGrGIP~~~h~~~g~~~~e~v~t~lha 171 (538)
....++|||.||+||... .....|.|.++.+ +.|+|.|||.||+.+. +...|+++-+
T Consensus 28 ~~ifLrELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~I~I~DnGiGMt~ed--------l~~~l~tiA~ 99 (559)
T 1y4s_A 28 KEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDKRTLTISDNGVGMTRDE--------VIDHLGTIAK 99 (559)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHCGGGGCSCCCCCEEEEEETTTTEEEEEECSSCCCHHH--------HHHHHSCCSC
T ss_pred hHHHHHHHHHHHHHHhHhHHHhhccCchhccCCCccEEEEEEeCCCcEEEEEECCCCCCHHH--------HHHHHhhhcc
Confidence 357899999999999821 2235788888865 4899999999999876 4445665333
Q ss_pred CCC--C----CCCCCCeeeccccccchhhHHHhhcCeEEEEEEeCC----EEEEEEEeCCcccccceeeecCCCCCCCCC
Q 009294 172 GGK--F----GGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDG----MEYHQKYSRGKPVTTLTCHVLPVDSKDRQG 241 (538)
Q Consensus 172 gsk--f----~~~~~~yk~sgG~~GvGls~vnalS~~~~V~t~~~g----~~y~q~f~~G~~~~~~~~~~~~~~~~~~~G 241 (538)
+++ | .+.........|++|+|..++-+++++++|.|+..+ ..|..+...|... .+.+. ....+|
T Consensus 100 Sg~~~f~e~l~~~~~~~~~~iG~fGvGfyS~f~VadkV~V~Sr~~~~~~~~~~~w~s~g~~~~-~i~~~-----~~~~~G 173 (559)
T 1y4s_A 100 SGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGEKPENGVFWESAGEGEY-TVADI-----TKEDRG 173 (559)
T ss_dssp CCCCCTTCC--------CCCCSSCCCSGGGHHHHEEEEEEEEECSSSCGGGEEEEEECSSSEE-EEEEE-----CCCSCE
T ss_pred cccHHHHHHhhccccccccccCCCCcchhhhhhccCeEEEEEcCCCCCCCeeEEEEEeCCCee-EEeEC-----CCCCCC
Confidence 332 3 110001235789999999999999999999998755 3566666554332 22211 234689
Q ss_pred cEEEEEe--CccccccccccCHHHHHHHHHHHH--hhCCCcEE
Q 009294 242 TRIRFWP--DKQVFTTAIQFDHNTIAGRIRELA--FLNPKLTI 280 (538)
Q Consensus 242 T~V~F~P--D~~~F~~~~~~~~~~i~~rl~elA--~lnpgl~i 280 (538)
|+|++.. |..-| ++...|.+.++.+| ..+| +.+
T Consensus 174 T~I~L~Lk~d~~Ef-----le~~~I~~iv~kys~fi~~P-I~~ 210 (559)
T 1y4s_A 174 TEITLHLREGEDEF-----LDDWRVRSIISKYSDHIALP-VEI 210 (559)
T ss_dssp EEEEEEECTTCGGG-----SCHHHHHHHHHHHHTTCSSC-EEE
T ss_pred eEEEEEEcchhhhc-----chHHHHHHHHHHHhccCCCc-eEE
Confidence 9999872 22222 35678999999999 7788 666
No 29
>2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A {Escherichia coli}
Probab=99.29 E-value=1.1e-11 Score=122.18 Aligned_cols=151 Identities=21% Similarity=0.274 Sum_probs=101.2
Q ss_pred hhHHHHHHHHhhHhhhcc--------------CCCCeEEEEEecC-CeEEEEECCCCccCCccCCCCcchHHHhhhhccc
Q 009294 107 LHHLVYEILDNAVDEAQA--------------GYASNIEVALLAD-NSVSVADNGRGIPIDLHPATNKSALETVLTVLHA 171 (538)
Q Consensus 107 L~~lv~EivdNAiDe~~~--------------g~~~~I~V~i~~d-g~isV~DnGrGIP~~~h~~~g~~~~e~v~t~lha 171 (538)
...+|+|||+||+|+... .....|.|.++.+ ..|+|.|||.||+.+. ++.+|+.+.+
T Consensus 48 ~~~~lrELI~NA~DA~~~~r~~~~~~~~~~~~~~~~~I~i~~~~~~~~i~I~DnG~GMs~ed--------l~~~~~~ia~ 119 (235)
T 2ior_A 48 KEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDKRTLTISDNGVGMTRDE--------VIDHLGTIAK 119 (235)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHTSCGGGGTTCCCCCEEEEEETTTTEEEEEECSSCCCHHH--------HHHHHTTCCC
T ss_pred HHHHHHHHHhCHHHHHHHHHhhhccCccccCCCceEEEEEEEcCCceEEEEEECCCCCCHHH--------HHHHHHHHcc
Confidence 457999999999999731 1224577777754 4799999999999876 4456666333
Q ss_pred CCC--CCC----CCCCeeeccccccchhhHHHhhcCeEEEEEEeCCE----EEEEEEeCCcccccceeeecCCCCCCCCC
Q 009294 172 GGK--FGG----SSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGM----EYHQKYSRGKPVTTLTCHVLPVDSKDRQG 241 (538)
Q Consensus 172 gsk--f~~----~~~~yk~sgG~~GvGls~vnalS~~~~V~t~~~g~----~y~q~f~~G~~~~~~~~~~~~~~~~~~~G 241 (538)
+++ |.+ +........|+.|+|+.++-++++.++|.|+..+. .|..++..+... .+.+. ....+|
T Consensus 120 S~~~~f~~~l~~~~~~~~~~iG~fGiG~~S~~~~~~~v~V~Sr~~~~~~~~~~~w~~~~~~~~-~i~~~-----~~~~~G 193 (235)
T 2ior_A 120 SGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGEKPENGVFWESAGEGEY-TVADI-----TKEDRG 193 (235)
T ss_dssp TTHHHHHHHCCSCHHHHHHHHTTCCCCGGGGGGTEEEEEEEEECTTSCGGGEEEEEECSSSEE-EEEEE-----CCCSCE
T ss_pred ccccchhhhhccccccccccCCCCChhHHHHHhCcCeEEEEEecCCCCCceeEEEEecCCCcE-EEeeC-----CCCCCC
Confidence 332 211 00011346799999999888888999999987643 677776654332 12111 244689
Q ss_pred cEEEEE--eCccccccccccCHHHHHHHHHHHH--hhCC
Q 009294 242 TRIRFW--PDKQVFTTAIQFDHNTIAGRIRELA--FLNP 276 (538)
Q Consensus 242 T~V~F~--PD~~~F~~~~~~~~~~i~~rl~elA--~lnp 276 (538)
|+|++. |+...| ++...|.+.++++| +.+|
T Consensus 194 T~V~v~Lk~~~~~~-----~e~~~i~~lv~~ya~~l~~P 227 (235)
T 2ior_A 194 TEITLHLREGEDEF-----LDDWRVRSIISKYSDHIALP 227 (235)
T ss_dssp EEEEEEECTTCGGG-----GCHHHHHHHHHHHTTSCCSC
T ss_pred EEEEEEEcCchhhh-----CCHHHHHHHHHHHhccCCCC
Confidence 999976 333333 46788999999999 5555
No 30
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A
Probab=99.24 E-value=1.4e-10 Score=128.39 Aligned_cols=154 Identities=21% Similarity=0.303 Sum_probs=102.5
Q ss_pred hhHHHHHHHHhhHhhhcc--------------CCCCeEEEEEecC-CeEEEEECCCCccCCccCCCCcchHHHhhhhccc
Q 009294 107 LHHLVYEILDNAVDEAQA--------------GYASNIEVALLAD-NSVSVADNGRGIPIDLHPATNKSALETVLTVLHA 171 (538)
Q Consensus 107 L~~lv~EivdNAiDe~~~--------------g~~~~I~V~i~~d-g~isV~DnGrGIP~~~h~~~g~~~~e~v~t~lha 171 (538)
....++|||.||+||... .....|.|.++.+ +.|+|.|||.||+.+. +...|+++-+
T Consensus 28 ~~ifLrELIsNA~DA~~k~r~~~l~~~~~~~~a~~~~I~I~~d~~~~~I~I~DnGiGMt~ed--------l~~~l~tiA~ 99 (624)
T 2ioq_A 28 KEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDKRTLTISDNGVGMTRDE--------VIDHLGTIAK 99 (624)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHTSTTTTTTCCCCCEEEEEETTTTEEEEEECSCCCCHHH--------HHHHHHHHCC
T ss_pred hHHHHHHHHHHHHHhhhhhHHhhccCcccccCCCCcEEEEEEeCCCcEEEEEECCCCCCHHH--------HHHHHHhhcc
Confidence 357899999999999721 1224788888865 4899999999999876 4445666333
Q ss_pred CCC--C----CCCCCCeeeccccccchhhHHHhhcCeEEEEEEeCC----EEEEEEEeCCcccccceeeecCCCCCCCCC
Q 009294 172 GGK--F----GGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDG----MEYHQKYSRGKPVTTLTCHVLPVDSKDRQG 241 (538)
Q Consensus 172 gsk--f----~~~~~~yk~sgG~~GvGls~vnalS~~~~V~t~~~g----~~y~q~f~~G~~~~~~~~~~~~~~~~~~~G 241 (538)
+++ | .+.........|++|+|..++-++|.+++|.|+..+ ..|..+...|... .+.+. ....+|
T Consensus 100 Sg~~~f~~~l~~~~~~~~~~iG~fGvGfyS~f~VadkV~V~Sr~~~~~~~~~~~w~s~g~~~~-~i~~~-----~~~~~G 173 (624)
T 2ioq_A 100 SGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGEKPENGVFWESAGEGEY-TVADI-----TKEDRG 173 (624)
T ss_dssp ---------------CCTTHHHHHHHHHHHHHHHEEEEEEEEECTTSCGGGEEEEEECSSSCC-EEEEE-----CCSSSE
T ss_pred cccHHHHHHhcccccccccccCCCCccHHHHHhcCCeEEEEECCCCCCCCeeEEEEEeCCCeE-EEEEC-----CCCCCC
Confidence 332 3 111001234789999999999999999999998755 3566666554322 22211 134689
Q ss_pred cEEEEEe--CccccccccccCHHHHHHHHHHHH--hhCCCcEE
Q 009294 242 TRIRFWP--DKQVFTTAIQFDHNTIAGRIRELA--FLNPKLTI 280 (538)
Q Consensus 242 T~V~F~P--D~~~F~~~~~~~~~~i~~rl~elA--~lnpgl~i 280 (538)
|+|++.. |..-| ++...|.+.++.+| ..+| +.+
T Consensus 174 T~I~L~Lk~d~~Ef-----l~~~~i~~ivkkys~fi~~P-I~~ 210 (624)
T 2ioq_A 174 TEITLHLREGEDEF-----LDDWRVRSIISKYSDHIALP-VEI 210 (624)
T ss_dssp EEEEEEECTTCGGG-----GCHHHHHHHHHHHHTTCSSC-EEE
T ss_pred eEEEEEEcchhhhc-----chHHHHHHHHHHHhccCCCc-eEE
Confidence 9999872 22222 34678999999999 7788 666
No 31
>2wer_A ATP-dependent molecular chaperone HSP82; ATPase, ATP-binding, phosphoprotein, stress respo nucleotide-binding; HET: RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A* 2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2yge_A* 2ygf_A* 2akp_A
Probab=99.15 E-value=2.2e-10 Score=111.63 Aligned_cols=160 Identities=19% Similarity=0.267 Sum_probs=102.4
Q ss_pred hHHHHHHHHhhHhhhcc------------CCCC--eEEEEEecC-CeEEEEECCCCccCCccCCCCcchHHHhhhhcccC
Q 009294 108 HHLVYEILDNAVDEAQA------------GYAS--NIEVALLAD-NSVSVADNGRGIPIDLHPATNKSALETVLTVLHAG 172 (538)
Q Consensus 108 ~~lv~EivdNAiDe~~~------------g~~~--~I~V~i~~d-g~isV~DnGrGIP~~~h~~~g~~~~e~v~t~lhag 172 (538)
..+|+|||+||+|+... +..+ .|.|.++.+ ..|+|.|||.||+.+. +...|+.+-++
T Consensus 28 ~~~lrELI~NA~DA~a~~~~~~~~~~~~~~~~~~i~I~i~~~~~~~~i~I~DnG~GMs~ed--------l~~~l~~ia~S 99 (220)
T 2wer_A 28 EIFLREIVSNASDALDKIRYKSLSDPKQLETEPDLFIRITPKPEQKVLEIRDSGIGMTKAE--------LINNLGTIAKS 99 (220)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHTTCGGGGGGCCCCCEEEEEEGGGTEEEEEECSCCCCHHH--------HHHHTTTSCCT
T ss_pred hHHHHHHHHhHHHHHHHHHhhcccCchhccCCCcEEEEEEECCCCCEEEEEEcCCCCCHHH--------HHHHHHhHhcc
Confidence 57999999999999752 1123 466666543 4799999999999876 33455553333
Q ss_pred CC------CCCCCCCeeeccccccchhhHHHhhcCeEEEEEEeCC-EEEEEEEeCCcccccceeeecCCCCCCCCCcEEE
Q 009294 173 GK------FGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDG-MEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIR 245 (538)
Q Consensus 173 sk------f~~~~~~yk~sgG~~GvGls~vnalS~~~~V~t~~~g-~~y~q~f~~G~~~~~~~~~~~~~~~~~~~GT~V~ 245 (538)
++ +... ......|+.|+|+.++-+++++++|.++..+ ..|..++..|... ...+. .......+||+|+
T Consensus 100 ~~~~f~~k~~~~--~~~~~iG~fGiG~~s~~~~~~~v~v~S~~~~~~~~~~~~~~~~~~-~i~~~--~~~~~~~~GT~I~ 174 (220)
T 2wer_A 100 GTKAFMEALSAG--ADVSMIGQFGVGFYSLFLVADRVQVISKSNDDEQYIWESNAGGSF-TVTLD--EVNERIGRGTILR 174 (220)
T ss_dssp THHHHHHHHTTT--CCGGGGGGGTCGGGGGGGTEEEEEEEEECTTSCCEEEEECSSSEE-EEEEC--SSSCCCSSEEEEE
T ss_pred cchhHHHHhhcc--CCcccCCccchhHHHhhhcCCeeEEEEecCCCceeEEEeCCCCce-Eeecc--cCCCCCCCCeEEE
Confidence 21 2211 1234679999999999999999999998654 4566666654322 11111 1012457899999
Q ss_pred EEe--CccccccccccCHHHHHHHHHHHHhhCCCcEEEEeeCC
Q 009294 246 FWP--DKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKED 286 (538)
Q Consensus 246 F~P--D~~~F~~~~~~~~~~i~~rl~elA~lnpgl~i~l~d~~ 286 (538)
+.. +...| ++...|.+.++.+|... ..-|+++.++
T Consensus 175 l~Lk~~~~~~-----~e~~~i~~~v~~~a~~l-~~PI~~~~~~ 211 (220)
T 2wer_A 175 LFLKDDQLEY-----LEEKRIKEVIKRHSEFV-AYPIQLVVTK 211 (220)
T ss_dssp EEECTTCGGG-----GCHHHHHHHHHHHCTTC-CSCEEECCCC
T ss_pred EEECcchHHh-----CCHHHHHHHHHHHHhcC-CCceEEEecc
Confidence 872 22222 46778999999998433 2346666654
No 32
>1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A*
Probab=99.12 E-value=2e-10 Score=114.87 Aligned_cols=161 Identities=18% Similarity=0.273 Sum_probs=103.9
Q ss_pred chhHHHHHHHHhhHhhhcc------------CCCCeEEEEE--ec-CCeEEEEECCCCccCCccCCCCcchHHHhhhhcc
Q 009294 106 GLHHLVYEILDNAVDEAQA------------GYASNIEVAL--LA-DNSVSVADNGRGIPIDLHPATNKSALETVLTVLH 170 (538)
Q Consensus 106 gL~~lv~EivdNAiDe~~~------------g~~~~I~V~i--~~-dg~isV~DnGrGIP~~~h~~~g~~~~e~v~t~lh 170 (538)
....+|+|||.||+|+... +..+.|.|.| +. ...|+|.|||.||+.+. +...|+++-
T Consensus 68 ~~~~~lrELI~NA~DA~ak~r~~~l~~~~~~~~~~~i~I~i~~d~~~~~I~I~DnG~GMs~ed--------L~~~l~~ia 139 (264)
T 1yc1_A 68 NKEIFLRELISNSSDALDKIRYETLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMTKAD--------LINNLGTIA 139 (264)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGGGCCCCCEEEEEETTTTEEEEEECSCCCCHHH--------HHHHHHSCT
T ss_pred CHHHHHHHHHHHHHHHhhhhhhhhccCccccCCCCeEEEEEEECCCeeEEEEEECCcCCCHHH--------HHHHHHhhc
Confidence 3457999999999999741 0125555555 43 34899999999999876 344555532
Q ss_pred cCCC--C----CCCCCCeeeccccccchhhHHHhhcCeEEEEEEeCC-EEEEEEEeCCcccccceeeecCCCCCCCCCcE
Q 009294 171 AGGK--F----GGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDG-MEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTR 243 (538)
Q Consensus 171 agsk--f----~~~~~~yk~sgG~~GvGls~vnalS~~~~V~t~~~g-~~y~q~f~~G~~~~~~~~~~~~~~~~~~~GT~ 243 (538)
++++ | ... ......|+.|+|..++-+++.+++|.|+..+ ..|..+...+... .+.+. + .....+||+
T Consensus 140 ~S~~~~f~~~l~~~--~d~~~iG~fGiGf~S~f~va~~v~V~Sr~~~~~~~~w~~~~~~~~-~i~~~--~-~~~~~~GT~ 213 (264)
T 1yc1_A 140 KSGTKAFMEALQAG--ADISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSF-TVRTD--T-GEPMGRGTK 213 (264)
T ss_dssp TSCHHHHHHHHHTT--CCGGGGGGGTCGGGGHHHHEEEEEEEEECTTSCCEEEEECSTTEE-EEEEC--C-SSCCSSEEE
T ss_pred cccchhhhhhhccc--cchhhcCCCCCCccccccCCCEEEEEEecCCCceEEEEEcCCceE-EEeec--C-CCCCCCCeE
Confidence 2322 1 001 1134679999999999999999999998754 4466666554332 12211 1 124578999
Q ss_pred EEEEe--CccccccccccCHHHHHHHHHHHHhhCCCcEEEEeeCC
Q 009294 244 IRFWP--DKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKED 286 (538)
Q Consensus 244 V~F~P--D~~~F~~~~~~~~~~i~~rl~elA~lnpgl~i~l~d~~ 286 (538)
|++.. |...| ++...|.+.++.+|-..| .-|++++++
T Consensus 214 I~l~Lk~~~~e~-----~e~~~i~~lv~k~s~fi~-~PI~~~~~~ 252 (264)
T 1yc1_A 214 VILHLKEDQTEY-----LEERRIKEIVKKHSQFIG-YPITLFVEK 252 (264)
T ss_dssp EEEEECGGGGGG-----GSHHHHHHHHHHHTTTCS-SCEEECCCC
T ss_pred EEEEECCchhhh-----hhHHHHHHHHHHHHhhCC-CCEEEeecc
Confidence 99882 22222 567889999999984432 447777665
No 33
>2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A*
Probab=99.11 E-value=4.9e-10 Score=110.34 Aligned_cols=164 Identities=16% Similarity=0.194 Sum_probs=101.8
Q ss_pred hhHHHHHHHHhhHhhhcc--------------CCCCeEEEEEecCC-eEEEEECCCCccCCccCCCCcchHHHhhhhccc
Q 009294 107 LHHLVYEILDNAVDEAQA--------------GYASNIEVALLADN-SVSVADNGRGIPIDLHPATNKSALETVLTVLHA 171 (538)
Q Consensus 107 L~~lv~EivdNAiDe~~~--------------g~~~~I~V~i~~dg-~isV~DnGrGIP~~~h~~~g~~~~e~v~t~lha 171 (538)
...+++|||.||+|+... +....|.|.++.++ .|+|.|||.||+.+. +...|+++-.
T Consensus 33 ~~~~lrELI~NA~DA~ak~~~~~~~~~~~~~~~~~~~I~i~~d~~~~~i~I~DnG~GMt~ed--------l~~~l~~ia~ 104 (236)
T 2gqp_A 33 KEIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEKNLLHVTDTGVGMTREE--------LVKNLGTIAK 104 (236)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHCTTTTTTCCCCCEEEEEETTTTEEEEEECSCCCCHHH--------HHHHHHCC--
T ss_pred chHHHHHHHHhHHHhhhhhhhhcccCcccccCCCceEEEEEEcCCCCEEEEEECCcCCCHHH--------HHHHHhhhcc
Confidence 467999999999999741 12246777777544 799999999999876 3345555333
Q ss_pred CCC--C----CCCC---CCeeeccccccchhhHHHhhcCeEEEEEEeCC-EEEEEEEeCCcccccceeeecCCCCCCCCC
Q 009294 172 GGK--F----GGSS---SGYSVSGGLHGVGLSVVNALSESLEVTVWRDG-MEYHQKYSRGKPVTTLTCHVLPVDSKDRQG 241 (538)
Q Consensus 172 gsk--f----~~~~---~~yk~sgG~~GvGls~vnalS~~~~V~t~~~g-~~y~q~f~~G~~~~~~~~~~~~~~~~~~~G 241 (538)
+++ | .... ......-|..|+|..++-.++..++|.|+..+ ..|..+...|.. ...+ ........+|
T Consensus 105 Sg~~~f~~kl~~~~~~~~~d~~~iG~fGiG~~S~f~va~~v~V~Sr~~~~~~~~w~~~gg~~--~i~~--~~~~~~~~~G 180 (236)
T 2gqp_A 105 SGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDSNEF--SVIA--DPRGNTLGRG 180 (236)
T ss_dssp -------------------CHHHHHHTTCGGGGGGGTEEEEEEEEECTTSCCEEEEESSSCE--EEEE--CTTCSCSSSE
T ss_pred cccHhHHHHhhccccccccchhhcCCCCcchhhHhhcCCEEEEEEeCCCCceEEEEEeCCEE--EEEe--ccCCCCCCCC
Confidence 332 2 1100 01124568999999999999999999998753 345555544332 1211 1111235689
Q ss_pred cEEEEEeCccccccccccCHHHHHHHHHHHHhhCCCcEEEEeeCC
Q 009294 242 TRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKED 286 (538)
Q Consensus 242 T~V~F~PD~~~F~~~~~~~~~~i~~rl~elA~lnpgl~i~l~d~~ 286 (538)
|+|++...... ..-++...|.+.++.+|-..| .-|.+++++
T Consensus 181 T~I~l~Lk~~~---~~~le~~~i~~lv~~~s~~i~-~pI~~~~~~ 221 (236)
T 2gqp_A 181 TTITLVLKEEA---SDYLELDTIKNLVKKYSQFIN-FPIYVWSSK 221 (236)
T ss_dssp EEEEEEECGGG---GGGGCHHHHHHHHHHHHTTCS-SCEEEEEEC
T ss_pred eEEEEEECCcc---hhhChHHHHHHHHHHHhhhCC-CceEEeeee
Confidence 99998732211 111367889999999984433 457777665
No 34
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A
Probab=99.04 E-value=2e-09 Score=119.73 Aligned_cols=155 Identities=17% Similarity=0.231 Sum_probs=91.2
Q ss_pred hHHHHHHHHhhHhhhcc------------CCC--CeEEEEEecCC-eEEEEECCCCccCCccCCCCcchHHHhhhhcccC
Q 009294 108 HHLVYEILDNAVDEAQA------------GYA--SNIEVALLADN-SVSVADNGRGIPIDLHPATNKSALETVLTVLHAG 172 (538)
Q Consensus 108 ~~lv~EivdNAiDe~~~------------g~~--~~I~V~i~~dg-~isV~DnGrGIP~~~h~~~g~~~~e~v~t~lhag 172 (538)
...++|||.||+|+... +.+ ..|.|.++.++ .|+|.|||.||+.+. +...|+++-.+
T Consensus 47 eifLRELIsNA~DA~dk~r~~~l~~~~~~~~a~~~~I~I~~d~~~~~I~I~DnGiGMt~ed--------l~~~l~tIA~S 118 (666)
T 2o1u_A 47 EIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEKNLLHVTDTGVGMTREE--------LVKNLGTIAKS 118 (666)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHTTSCTTSSSSCCCCCEEEEEETTTTEEEEEECSCCCCHHH--------HHHHTTC----
T ss_pred hHHHHHHHhhHHHHHHHHHHHhccCchhccCCCccEEEEEEeCCCCEEEEEECCCCCCHHH--------HHHHHhhhccc
Confidence 46899999999999721 113 46888887654 899999999999876 33445553222
Q ss_pred CC--C----CCCC---CCeeeccccccchhhHHHhhcCeEEEEEEeCC-EEEEEEEeCCcccccceeeecCCCCCCCCCc
Q 009294 173 GK--F----GGSS---SGYSVSGGLHGVGLSVVNALSESLEVTVWRDG-MEYHQKYSRGKPVTTLTCHVLPVDSKDRQGT 242 (538)
Q Consensus 173 sk--f----~~~~---~~yk~sgG~~GvGls~vnalS~~~~V~t~~~g-~~y~q~f~~G~~~~~~~~~~~~~~~~~~~GT 242 (538)
|+ | .+.. .......|+.|+|..++-+++++++|.|+..+ ..|..+...|.. .+.+ ........+||
T Consensus 119 Gtk~f~~kl~~~~~~~~~d~~~IGqFGvGfySaf~vAdkV~V~Sr~~~~~~~~W~s~gg~~--ti~~--~~~~~~~~~GT 194 (666)
T 2o1u_A 119 GTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDSNEF--SVIA--DPRGNTLGRGT 194 (666)
T ss_dssp ---------------------------CTTGGGGGTEEEEEEEEECTTSCCEEEEESSSCC--EEEE--CTTCCSSSSEE
T ss_pred ccHHHHHHhhhcccccccchhhccCCCcHHHhHHHhcCEEEEEEeeCCCceEEEEEeCCeE--EEEe--cccCCCCCCCe
Confidence 22 2 2110 01124569999999999999999999998754 345555444433 1221 11112357899
Q ss_pred EEEEEe--CccccccccccCHHHHHHHHHHHH--hhCCCcEE
Q 009294 243 RIRFWP--DKQVFTTAIQFDHNTIAGRIRELA--FLNPKLTI 280 (538)
Q Consensus 243 ~V~F~P--D~~~F~~~~~~~~~~i~~rl~elA--~lnpgl~i 280 (538)
+|++.. |..-| ++...|.+.++.+| +.+| +.+
T Consensus 195 ~I~L~Lk~d~~Ef-----le~~~I~~ivkkys~fi~~P-I~~ 230 (666)
T 2o1u_A 195 TITLVLKEEASDY-----LELDTIKNLVKKYSQFINFP-IYV 230 (666)
T ss_dssp EEEEEECTTTTTS-----SSTTHHHHHHHHHSTTCCSC-EEE
T ss_pred EEEEEEccchhhh-----ccHHHHHHHHHHHHhhCCCc-eEE
Confidence 999872 22222 34678999999999 6677 444
No 35
>3peh_A Endoplasmin homolog; structural genomics, structural genomics consortium, SGC, HE protein, chaperone, ATP binding; HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A*
Probab=98.85 E-value=2.5e-08 Score=100.00 Aligned_cols=161 Identities=19% Similarity=0.242 Sum_probs=100.7
Q ss_pred hHHHHHHHHhhHhhhcc--------------CCCCeEEEEEecC-CeEEEEECCCCccCCccCCCCcchHHHhhhhcccC
Q 009294 108 HHLVYEILDNAVDEAQA--------------GYASNIEVALLAD-NSVSVADNGRGIPIDLHPATNKSALETVLTVLHAG 172 (538)
Q Consensus 108 ~~lv~EivdNAiDe~~~--------------g~~~~I~V~i~~d-g~isV~DnGrGIP~~~h~~~g~~~~e~v~t~lhag 172 (538)
...++|||.||.||... +..-.|.|.++.+ ..|+|.|||.||+.+. +...|+.+-.+
T Consensus 48 ~ifLRELIsNA~DA~~k~r~~~l~d~~~~~~~~~l~I~I~~d~~~~tLtI~DNGiGMt~ed--------L~~~LgtIa~S 119 (281)
T 3peh_A 48 EVFLRELISNAADALEKIRFLSLSDESVLGEEKKLEIRISANKEKNILSITDTGIGMTKVD--------LINNLGTIAKS 119 (281)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHTTCGGGGTTCCCCCEEEEEETTTTEEEEEECSCCCCHHH--------HHHHHHHHHHS
T ss_pred HHHHHHHHhChHHHHHHHHHHhcCCchhccCCCceEEEEEEcCCCcEEEEEeCCCCCCHHH--------HHHHHHHHHhH
Confidence 56889999999999741 1234677777754 5899999999999876 22334443333
Q ss_pred CC--C----CC-CCCCeeeccccccchhhHHHhhcCeEEEEEEeCC-EEEEEEEeCCcccccceeeecCCCCCCCCCcEE
Q 009294 173 GK--F----GG-SSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDG-MEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRI 244 (538)
Q Consensus 173 sk--f----~~-~~~~yk~sgG~~GvGls~vnalS~~~~V~t~~~g-~~y~q~f~~G~~~~~~~~~~~~~~~~~~~GT~V 244 (538)
|+ | .. . .-....|+.|+|..++-+++..++|.|+.++ ..|..+...|... .+.. .+.+....+||+|
T Consensus 120 gtk~f~e~l~~~~--~d~~~IGqFGVGFySaf~vadkV~V~Sk~~~~~~~~Wes~g~g~f-ti~~--~~~~~~~~~GT~I 194 (281)
T 3peh_A 120 GTSNFLEAISKSG--GDMSLIGQFGVGFYSAFLVADKVIVYTKNNDDEQYIWESTADAKF-TIYK--DPRGATLKRGTRI 194 (281)
T ss_dssp CHHHHHHHHHHTT--CCSTTTTTTTCGGGGGGGTEEEEEEEEECTTSCCEEEEEETTSCE-EEEE--CTTCSTTSSEEEE
T ss_pred hhhhHHHhhhccc--cccccccccCccchhhccccCEEEEEEecCCCCEEEEEECCCccE-EEEE--cCCCCCCCCCeEE
Confidence 31 1 00 0 1123679999999999999999999998754 4566665554322 1111 1112345789999
Q ss_pred EEEeCccccccccccCHHHHHHHHHHHHhhCCCcEEEEeeC
Q 009294 245 RFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKE 285 (538)
Q Consensus 245 ~F~PD~~~F~~~~~~~~~~i~~rl~elA~lnpgl~i~l~d~ 285 (538)
+......- ..-++...|.+.++..+-.-| .-|.|..+
T Consensus 195 ~L~Lked~---~e~le~~~ik~ivkkys~fi~-~pI~l~~~ 231 (281)
T 3peh_A 195 SLHLKEDA---TNLLNDKKLMDLISKYSQFIQ-FPIYLLHE 231 (281)
T ss_dssp EEEECGGG---GGGGSHHHHHHHHHHHTTTCC-SCEEEEEE
T ss_pred EEEECCch---hhhcCHHHHHHHHHHhhccCC-cceEEeee
Confidence 98833211 012456778888888773322 33555443
No 36
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A*
Probab=98.84 E-value=8e-09 Score=103.44 Aligned_cols=163 Identities=16% Similarity=0.185 Sum_probs=96.9
Q ss_pred hHHHHHHHHhhHhhhcc--------------CCCCeEEEEEecC-CeEEEEECCCCccCCccCCCCcchHHHhhhhcccC
Q 009294 108 HHLVYEILDNAVDEAQA--------------GYASNIEVALLAD-NSVSVADNGRGIPIDLHPATNKSALETVLTVLHAG 172 (538)
Q Consensus 108 ~~lv~EivdNAiDe~~~--------------g~~~~I~V~i~~d-g~isV~DnGrGIP~~~h~~~g~~~~e~v~t~lhag 172 (538)
...++|||.||+||... +..-.|.|.++.+ ..|+|.|||.||+.+. +...|+++-.+
T Consensus 30 eifLrELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~i~~d~~~~~l~I~DnGiGMt~ed--------l~~~l~tia~S 101 (269)
T 1qy5_A 30 EIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEKNLLHVTDTGVGMTREE--------LVKNLGTIAKS 101 (269)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHCTTTTTTCCCCCEEEEEETTTTEEEEEECSCCCCHHH--------HHHHHHSCCSH
T ss_pred hHHHHHHHHHHHHHHHhhhhhhccCchhccCCCceEEEEEEcCCceEEEEEECCCCCCHHH--------HHHHhhhhccc
Confidence 35899999999999741 1224577777654 4899999999999876 33344443222
Q ss_pred -CC-C----CCC---CCCeeeccccccchhhHHHhhcCeEEEEEEeCC-EEEEEEEeCCcccccceeeecCCCCCCCCCc
Q 009294 173 -GK-F----GGS---SSGYSVSGGLHGVGLSVVNALSESLEVTVWRDG-MEYHQKYSRGKPVTTLTCHVLPVDSKDRQGT 242 (538)
Q Consensus 173 -sk-f----~~~---~~~yk~sgG~~GvGls~vnalS~~~~V~t~~~g-~~y~q~f~~G~~~~~~~~~~~~~~~~~~~GT 242 (538)
.+ | ... ........|+.|+|..++-.++..++|.|+..+ ..|..+...|... +.. ........+||
T Consensus 102 gtk~F~~kl~~~~~~~~~d~~~IG~fGvGfySaf~va~~v~V~Sk~~~~~~~~w~s~gg~~~--i~~--~~~~~~~~~GT 177 (269)
T 1qy5_A 102 GTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDSNEFS--VIA--DPRGNTLGRGT 177 (269)
T ss_dssp HHHHHHHHHHHHHHHTCCCHHHHHHTTCGGGGGGGTEEEEEEEEECTTSCCEEEEECSSCEE--EEE--CTTCSCSSSEE
T ss_pred ccHHHHHhhhhcccccccchhhcCCccccHHHHhhccceEEEEEEecCCcEEEEEEeCCEEE--EEe--ccCCCcCCCCe
Confidence 21 2 000 000123458999999999999999999998753 3455444443321 111 11112346899
Q ss_pred EEEEEeCccccccccccCHHHHHHHHHHHHhhCCCcEEEEeeCC
Q 009294 243 RIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKED 286 (538)
Q Consensus 243 ~V~F~PD~~~F~~~~~~~~~~i~~rl~elA~lnpgl~i~l~d~~ 286 (538)
+|++...... ..-++...|.+.++..+-.-| .-|+|..++
T Consensus 178 ~I~L~Lk~d~---~e~le~~~i~~lvkkys~fi~-~PI~l~~~k 217 (269)
T 1qy5_A 178 TITLVLKEEA---SDYLELDTIKNLVKKYSQFIN-FPIYVWSSK 217 (269)
T ss_dssp EEEEEECGGG---GGGGSHHHHHHHHHTTCTTCS-SCEEEEEEC
T ss_pred EEEEEEcccc---hhhhhHHHHHHHHHhhhcccc-eeeEEeeee
Confidence 9998722110 111355677777777773322 335665543
No 37
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae}
Probab=98.83 E-value=2.7e-08 Score=110.83 Aligned_cols=156 Identities=19% Similarity=0.261 Sum_probs=100.1
Q ss_pred hHHHHHHHHhhHhhhcc--------------CCCCeEEEEEecC-CeEEEEECCCCccCCccCCCCcchHHHhhhhcccC
Q 009294 108 HHLVYEILDNAVDEAQA--------------GYASNIEVALLAD-NSVSVADNGRGIPIDLHPATNKSALETVLTVLHAG 172 (538)
Q Consensus 108 ~~lv~EivdNAiDe~~~--------------g~~~~I~V~i~~d-g~isV~DnGrGIP~~~h~~~g~~~~e~v~t~lhag 172 (538)
...++|||.||+|+... +....|.|.++.+ ..|+|.|||.||+.+. +...|+++-.+
T Consensus 28 eifLRELIsNA~DA~~k~r~~~ltd~~~~~~~~~~~I~I~~d~~~~~I~I~DnGiGMt~ed--------l~~~l~tIA~S 99 (677)
T 2cg9_A 28 EIFLRELISNASDALDKIRYKSLSDPKQLETEPDLFIRITPKPEQKVLEIRDSGIGMTKAE--------LINNLGTIAKS 99 (677)
T ss_dssp THHHHHHHHHHHHHHHHHHHHTSSCTTTTTTCCCCCEEEEEEGGGTEEEEEECSCCCCHHH--------HHGGGSSSSSC
T ss_pred hHHHHHHhhCHHHHHHHHHHHhccChhhccCCCCcEEEEEEeCCCCEEEEEECCCCCCHHH--------HHHHHHhHhcc
Confidence 45899999999999831 1234688888854 4899999999999876 33345542222
Q ss_pred C------CCCCCCCCeeeccccccchhhHHHhhcCeEEEEEEeCC-EEEEEEEeCCcccccceeeecCCCCCCCCCcEEE
Q 009294 173 G------KFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDG-MEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIR 245 (538)
Q Consensus 173 s------kf~~~~~~yk~sgG~~GvGls~vnalS~~~~V~t~~~g-~~y~q~f~~G~~~~~~~~~~~~~~~~~~~GT~V~ 245 (538)
| ++.+. ......|+.|+|..++=+++.+++|.|+..+ ..|..+...|... .+.. .+.+....+||+|+
T Consensus 100 gt~~f~~kl~~~--~d~~~IGqFGvGFySaf~vadkV~V~Sk~~~~~~~~W~s~g~~~~-ti~~--~~~~~~~~~GT~I~ 174 (677)
T 2cg9_A 100 GTKAFMEALSAG--ADVSMIGQFGVGFYSLFLVADRVQVISKSNDDEQYIWESNAGGSF-TVTL--DEVNERIGRGTILR 174 (677)
T ss_dssp TTHHHHSCCCSS--CCCCCCCCTTCTTGGGGGTEEEEEEEEECTTSCEEEEEECSSSEE-EEEE--CCSSCCCSSEEEEE
T ss_pred ccHHHHHhhhcc--cchhhcCCCCchhHHHhhcCcEEEEEEccCCCceEEEEEcCCceE-EEee--cCCCCCCCCCeEEE
Confidence 2 23221 1124679999999999899999999998755 4566665554322 1211 11123457899999
Q ss_pred EEe--CccccccccccCHHHHHHHHHHHHhhCCCcEEEE
Q 009294 246 FWP--DKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIAL 282 (538)
Q Consensus 246 F~P--D~~~F~~~~~~~~~~i~~rl~elA~lnpgl~i~l 282 (538)
... |..-| ++...|.+.++.+|-.- +.-|++
T Consensus 175 L~Lk~d~~e~-----l~~~~i~~lvkkys~fi-~~PI~l 207 (677)
T 2cg9_A 175 LFLKDDQLEY-----LEEKRIKEVIKRHSEFV-AYPIQL 207 (677)
T ss_dssp EEECTTGGGG-----GCHHHHHHHHHHHSTTC-SSCEEE
T ss_pred EEEcchhhcc-----ccHHHHHHHHHHHHhhC-CCCeEE
Confidence 882 22222 35677888888887432 233454
No 38
>3nmq_A Heat shock protein HSP 90-beta; ATPase, chaperone-chaperone inhibitor complex; HET: 7PP; 2.20A {Homo sapiens} SCOP: d.122.1.1
Probab=98.79 E-value=1.9e-08 Score=98.83 Aligned_cols=159 Identities=18% Similarity=0.264 Sum_probs=99.1
Q ss_pred hHHHHHHHHhhHhhhcc--------------CCCCeEEEEEecC-CeEEEEECCCCccCCccCCCCcchHHHhhhhcccC
Q 009294 108 HHLVYEILDNAVDEAQA--------------GYASNIEVALLAD-NSVSVADNGRGIPIDLHPATNKSALETVLTVLHAG 172 (538)
Q Consensus 108 ~~lv~EivdNAiDe~~~--------------g~~~~I~V~i~~d-g~isV~DnGrGIP~~~h~~~g~~~~e~v~t~lhag 172 (538)
...++|||.||.||... +..-.|.|.++.+ ..|+|.|||.||+.+... -.|+.+-.+
T Consensus 41 ~ifLRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~L~I~DnGiGMt~edL~--------~~LgtIA~S 112 (239)
T 3nmq_A 41 EIFLRELISNASDALDKIRYESLTDPSKLDSGKELKIDIIPNPQERTLTLVDTGIGMTKADLI--------NNLGTIAKS 112 (239)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHCGGGGTTCCCCCEEEEEETTTTEEEEEECSCCCCHHHHH--------THHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHhccCchhccCCCceEEEEEEeCCccEEEEEeCCCCCCHHHHH--------HHHHHHhcc
Confidence 57899999999999742 1123577777754 489999999999987632 123332222
Q ss_pred C-C-C----CCCCCCeeeccccccchhhHHHhhcCeEEEEEEeCC-EEEEEEEeCCcccccceeeecCCCCCCCCCcEEE
Q 009294 173 G-K-F----GGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDG-MEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIR 245 (538)
Q Consensus 173 s-k-f----~~~~~~yk~sgG~~GvGls~vnalS~~~~V~t~~~g-~~y~q~f~~G~~~~~~~~~~~~~~~~~~~GT~V~ 245 (538)
+ + | ..+ .-....|+.|+|..++-.++..++|.++.++ ..|..+...+... .+... + +....+||+|+
T Consensus 113 gtk~f~e~~~~~--~d~~~IGqFGvGfySaf~vadkv~V~Sk~~~~~~~~W~s~~~g~f-ti~~~--~-~~~~~~GT~I~ 186 (239)
T 3nmq_A 113 GTKAFMEALQAG--ADISMIGQFGVGFYSAYLVAEKVVVITKHNDDEQYAWESSAGGSF-TVRAD--H-GEPIGRGTKVI 186 (239)
T ss_dssp HHHHHHHHHHTT--CCGGGGGGGTCGGGGGGGTEEEEEEEEECTTSCCEEEEECSTTEE-EEEEC--C-SSCCSSEEEEE
T ss_pred cchhhhhhhccc--CCcccccccCcccccccccCCEEEEEEeeCCCceeEEEECCCCcE-EEEec--C-CCcCCCCCEEE
Confidence 1 1 1 111 1134689999999999999999999998753 4565554443221 12111 1 23347999999
Q ss_pred EEe--CccccccccccCHHHHHHHHHHHHhhCCCcEEEEeeCC
Q 009294 246 FWP--DKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKED 286 (538)
Q Consensus 246 F~P--D~~~F~~~~~~~~~~i~~rl~elA~lnpgl~i~l~d~~ 286 (538)
... |..-| ++...|++.++..+-.- ..-|++..++
T Consensus 187 L~lk~d~~e~-----l~~~~i~~lv~kys~fi-~~pI~~~~~~ 223 (239)
T 3nmq_A 187 LHLKEDQTEY-----LEERRVKEVVKKHSQFI-GYPITLYLEK 223 (239)
T ss_dssp EEECGGGGGG-----GSHHHHHHHHHHHCTTC-SSCEEECCCS
T ss_pred EEECCChHHh-----cCHHHHHHHHHHHHhcc-CCceEEeeee
Confidence 883 33223 45567888888777332 2346665544
No 39
>3ied_A Heat shock protein; HSP90, chaperone, structural genomics, structura genomics consortium, SGC, stress response; HET: AN2; 2.01A {Plasmodium falciparum}
Probab=98.44 E-value=8.7e-07 Score=87.43 Aligned_cols=129 Identities=17% Similarity=0.198 Sum_probs=78.7
Q ss_pred eEEEEEecC-CeEEEEECCCCccCCccCCCCcchHHHhhhhcccCC-C-CC----CCCCCeeeccccccchhhHHHhhcC
Q 009294 129 NIEVALLAD-NSVSVADNGRGIPIDLHPATNKSALETVLTVLHAGG-K-FG----GSSSGYSVSGGLHGVGLSVVNALSE 201 (538)
Q Consensus 129 ~I~V~i~~d-g~isV~DnGrGIP~~~h~~~g~~~~e~v~t~lhags-k-f~----~~~~~yk~sgG~~GvGls~vnalS~ 201 (538)
.|.|.++.+ ..|+|+|||.||+.+.. .-.|+.+-.+| + |- .. .....-.|+.|+|..++=.++.
T Consensus 120 ~I~I~~Dk~~~tLtI~DNGiGMTkeeL--------~~~LgtIA~SGtk~Fle~l~~~-~~d~~~IGqFGVGFySaFmVAd 190 (272)
T 3ied_A 120 IIKIKPDKEKKTLTITDNGIGMDKSEL--------INNLGTIAQSGTAKFLKQIEEG-KADSNLIGQFGVGFYSSFLVSN 190 (272)
T ss_dssp CEEEEEETTTTEEEEEECSCCCCHHHH--------HHHTTCSCCHHHHHHHHHHHTT-SSCTTCGGGSCCGGGGGGGTEE
T ss_pred EEEEEEeCCCCEEEEEeCCCCCCHHHH--------HHHHHHHhhcchhhHHHHhhcc-cccccccCcccceeheeeccCC
Confidence 588888854 58999999999998762 22333322222 1 20 00 0012356999999999999999
Q ss_pred eEEEEEEeCCEEEEEEEeCCcccccceeeec---CCCCCCCCCcEEEEEe--CccccccccccCHHHHHHHHHHHH
Q 009294 202 SLEVTVWRDGMEYHQKYSRGKPVTTLTCHVL---PVDSKDRQGTRIRFWP--DKQVFTTAIQFDHNTIAGRIRELA 272 (538)
Q Consensus 202 ~~~V~t~~~g~~y~q~f~~G~~~~~~~~~~~---~~~~~~~~GT~V~F~P--D~~~F~~~~~~~~~~i~~rl~elA 272 (538)
.++|.|+.++..|..+...+..- .+..... ..+....+||+|.... |..-| ++...|++.++..+
T Consensus 191 kV~V~Sk~dd~~~~WeS~g~gsf-ti~~~~~~~~~~g~~~~~GT~I~L~Lked~~e~-----le~~~ik~likkys 260 (272)
T 3ied_A 191 RVEVYTKKEDQIYRWSSDLKGSF-SVNEIKKYDQEYDDIKGSGTKIILHLKEECDEY-----LEDYKLKELIKKYS 260 (272)
T ss_dssp EEEEEEESSSCEEEEEECSSSEE-EEEECTTCTTCC--CCSSEEEEEEEECGGGGGG-----GSHHHHHHHHHHHC
T ss_pred EEEEEEcCCCceEEEEECCCCCE-EEEECcccccccCCCCCCCcEEEEEECCChHHh-----cCHHHHHHHHHHHH
Confidence 99999996567777766543321 1211110 0122457899999873 33333 34556777777766
No 40
>1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3 PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A*
Probab=98.17 E-value=8.8e-06 Score=72.44 Aligned_cols=84 Identities=20% Similarity=0.340 Sum_probs=56.5
Q ss_pred CchhHHHHHHHHhhHhhhccC-CCCeEEEEEec-CC--eEEEEECCCCccCCccCCCCcchHHHhhhhcccCCCCCCCCC
Q 009294 105 RGLHHLVYEILDNAVDEAQAG-YASNIEVALLA-DN--SVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSS 180 (538)
Q Consensus 105 ~gL~~lv~EivdNAiDe~~~g-~~~~I~V~i~~-dg--~isV~DnGrGIP~~~h~~~g~~~~e~v~t~lhagskf~~~~~ 180 (538)
.-+..++.|+|+||+.++..+ ....|.|.+.. ++ .|+|+|||.||| + .+.+|.....+..
T Consensus 38 ~~l~~il~~l~~Nai~h~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~g~~-~---------~~~~~~~~~~~~~------ 101 (145)
T 1th8_A 38 TEIKTVVSEAVTNAIIHGYNNDPNGIVSISVIIEDGVVHLTVRDEGVGIP-D---------IEEARQPLFTTKP------ 101 (145)
T ss_dssp HHHHHHHHHHHHHHHHTTSTTCTTSEEEEEEEEETTEEEEEEEECSSCCS-C---------HHHHTCCC-----------
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEEEeCCEEEEEEEECCCCcC-h---------HHHhhcccccCCC------
Confidence 457889999999999987643 24678888774 33 599999999999 3 3344443221111
Q ss_pred CeeeccccccchhhHHHhhcCeEEEEEE
Q 009294 181 GYSVSGGLHGVGLSVVNALSESLEVTVW 208 (538)
Q Consensus 181 ~yk~sgG~~GvGls~vnalS~~~~V~t~ 208 (538)
..+-.|+|+.++..+.+.+.++..
T Consensus 102 ----~~~~~GlGL~iv~~~~~~i~~~~~ 125 (145)
T 1th8_A 102 ----ELERSGMGFTIMENFMDEVIVESE 125 (145)
T ss_dssp ------CCCSCHHHHHHHHSSEEEEEEE
T ss_pred ----CCCCCcchHHHHHHHHheEEEEeC
Confidence 113379999999999885555543
No 41
>3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A
Probab=97.97 E-value=2.2e-05 Score=69.54 Aligned_cols=76 Identities=20% Similarity=0.357 Sum_probs=53.1
Q ss_pred CCchhHHHHHHHHhhHhhhccCCCCeEEEEEecCC---eEEEEECCCCccCCccCCCCcchHHHhhhhcccCCCCCCCCC
Q 009294 104 PRGLHHLVYEILDNAVDEAQAGYASNIEVALLADN---SVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSS 180 (538)
Q Consensus 104 ~~gL~~lv~EivdNAiDe~~~g~~~~I~V~i~~dg---~isV~DnGrGIP~~~h~~~g~~~~e~v~t~lhagskf~~~~~ 180 (538)
..-|..++.++|+||+.+... ...|.|.+..++ .|+|.|||.|||.+..+ -+|.....
T Consensus 45 ~~~l~~il~nll~NAi~~~~~--~~~I~i~~~~~~~~~~i~i~D~G~g~~~~~~~--------~~f~~~~~--------- 105 (152)
T 3a0y_A 45 RTRIKQVLINLVQNAIEATGE--NGKIKITSEDMYTKVRVSVWNSGPPIPEELKE--------KIFSPFFT--------- 105 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHCT--TCEEEEEEEECSSEEEEEEEEESCCCCGGGTT--------GGGSTTCC---------
T ss_pred HHHHHHHHHHHHHHHHHhcCC--CCEEEEEEEecCCEEEEEEEeCCCCcCHHHHH--------hHhhhhcc---------
Confidence 356889999999999998732 357888887543 59999999999987632 24433211
Q ss_pred CeeeccccccchhhHHHhhcC
Q 009294 181 GYSVSGGLHGVGLSVVNALSE 201 (538)
Q Consensus 181 ~yk~sgG~~GvGls~vnalS~ 201 (538)
...+-+|+|++++..+.+
T Consensus 106 ---~~~~g~GlGL~i~~~~~~ 123 (152)
T 3a0y_A 106 ---TKTQGTGLGLSICRKIIE 123 (152)
T ss_dssp ---CC--CCCCSHHHHHHHHH
T ss_pred ---CCCCCCCcCHHHHHHHHH
Confidence 112237999999987753
No 42
>1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A
Probab=97.91 E-value=5.2e-05 Score=67.30 Aligned_cols=78 Identities=22% Similarity=0.339 Sum_probs=54.7
Q ss_pred CCCchhHHHHHHHHhhHhhhccCCCCeEEEEEecCC---eEEEEECCCCccCCccCCCCcchHHHhhhhcccCCCCCCCC
Q 009294 103 GPRGLHHLVYEILDNAVDEAQAGYASNIEVALLADN---SVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSS 179 (538)
Q Consensus 103 ~~~gL~~lv~EivdNAiDe~~~g~~~~I~V~i~~dg---~isV~DnGrGIP~~~h~~~g~~~~e~v~t~lhagskf~~~~ 179 (538)
+..-|..++.++|+||+.+.. ..|.|.+..++ .|+|.|||.|||.+..+ .+|.....+.
T Consensus 41 d~~~l~~il~nLl~NAi~~~~----~~i~i~~~~~~~~~~i~i~D~G~gi~~~~~~--------~~f~~~~~~~------ 102 (152)
T 1id0_A 41 EQNDFVEVMGNVLDNACKYCL----EFVEISARQTDEHLYIVVEDDGPGIPLSKRE--------VIFDRGQRVD------ 102 (152)
T ss_dssp CHHHHHHHHHHHHHHHHHHCS----SEEEEEEEECSSCEEEEEEESSSCCCGGGTT--------GGGSCCCCTT------
T ss_pred CHHHHHHHHHHHHHHHHHhCc----CeEEEEEEecCCEEEEEEEeCCCCcCHHHHH--------HHhccceecc------
Confidence 455689999999999999863 37888887543 59999999999987632 2444322111
Q ss_pred CCeeeccccccchhhHHHhhcCe
Q 009294 180 SGYSVSGGLHGVGLSVVNALSES 202 (538)
Q Consensus 180 ~~yk~sgG~~GvGls~vnalS~~ 202 (538)
...+-+|+|++++..+.+.
T Consensus 103 ----~~~~g~GlGL~i~~~~~~~ 121 (152)
T 1id0_A 103 ----TLRPGQGVGLAVAREITEQ 121 (152)
T ss_dssp ----CCCTTCCSCHHHHHHHHHH
T ss_pred ----CCCCCcccCHHHHHHHHHH
Confidence 1123489999999888543
No 43
>3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat fold, TR; HET: ATP; 1.61A {Bacillus subtilis}
Probab=97.85 E-value=3.2e-05 Score=70.97 Aligned_cols=83 Identities=20% Similarity=0.351 Sum_probs=53.5
Q ss_pred CCchhHHHHHHHHhhHhhhccCCCCeEEEEE--ecC-C--eEEEEECCCCccCCccCCCCcchHHHhhhhcccCCCCCCC
Q 009294 104 PRGLHHLVYEILDNAVDEAQAGYASNIEVAL--LAD-N--SVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGS 178 (538)
Q Consensus 104 ~~gL~~lv~EivdNAiDe~~~g~~~~I~V~i--~~d-g--~isV~DnGrGIP~~~h~~~g~~~~e~v~t~lhagskf~~~ 178 (538)
..-|..++.++|+||+++...+ ..|.|.+ ..+ + .|+|+|||.|||.+..+ -+|.....+..
T Consensus 41 ~~~l~~il~nLl~NAi~~~~~~--~~i~I~i~~~~~~~~~~i~V~D~G~gi~~~~~~--------~lf~~~~~~~~---- 106 (177)
T 3sl2_A 41 QDKITQVLDNIISNALKYSPEG--GHVTFSIDVNEEEELLYISVKDEGIGIPKKDVE--------KVFDRFYRVDK---- 106 (177)
T ss_dssp HHHHHHHHHHHHHHHHHTCCTT--CCEEEEEEEETTTTEEEEEEECCSSCCCTTTTT--------TTTSTTCCCC-----
T ss_pred HHHHHHHHHHHHHHHHHhCCCC--CeEEEEEEEccCCCEEEEEEEECCCCCCHHHHH--------HHHhhhccCCC----
Confidence 4568999999999999987543 3455555 543 3 59999999999987632 24444332211
Q ss_pred CCCeeeccccccchhhHHHhhcCe
Q 009294 179 SSGYSVSGGLHGVGLSVVNALSES 202 (538)
Q Consensus 179 ~~~yk~sgG~~GvGls~vnalS~~ 202 (538)
......+-+|+|++++..+.+.
T Consensus 107 --~~~~~~~g~GlGL~iv~~~~~~ 128 (177)
T 3sl2_A 107 --ARTRKLGGTGLGLAIAKEMVQA 128 (177)
T ss_dssp -------CCCCCCHHHHHHHHHHH
T ss_pred --CCCCCCCCCCcCHHHHHHHHHH
Confidence 1112233589999999887643
No 44
>1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A
Probab=97.83 E-value=4.7e-05 Score=67.67 Aligned_cols=79 Identities=25% Similarity=0.431 Sum_probs=52.3
Q ss_pred CCchhHHHHHHHHhhHhhhccCCCCeEEEEEecC-C--eEEEEECCCCccCCccCCCCcchHHHhhhhcccCCCCCCCCC
Q 009294 104 PRGLHHLVYEILDNAVDEAQAGYASNIEVALLAD-N--SVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSS 180 (538)
Q Consensus 104 ~~gL~~lv~EivdNAiDe~~~g~~~~I~V~i~~d-g--~isV~DnGrGIP~~~h~~~g~~~~e~v~t~lhagskf~~~~~ 180 (538)
..-|..++.++|+||+.+...| .|.|.+..+ + .|+|.|||.|||.+. .+-+|.....+..
T Consensus 44 ~~~l~~il~nLl~NA~~~~~~~---~I~i~~~~~~~~~~i~v~D~G~gi~~~~--------~~~if~~f~~~~~------ 106 (150)
T 1ysr_A 44 PAGLRLAVDNAIANAVKHGGAT---LVQLSAVSSRAGVEIAIDDNGSGVPEGE--------RQVVFERFSRGST------ 106 (150)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCS---EEEEEEEEETTEEEEEEEESSSCCCGGG--------HHHHHTSCC----------
T ss_pred HHHHHHHHHHHHHHHHhcCCCc---EEEEEEEecCCEEEEEEEECCCCCCHHH--------HHHHhcccccCCC------
Confidence 4568899999999999986433 788887743 3 599999999999876 4456654332211
Q ss_pred CeeeccccccchhhHHHhhcCe
Q 009294 181 GYSVSGGLHGVGLSVVNALSES 202 (538)
Q Consensus 181 ~yk~sgG~~GvGls~vnalS~~ 202 (538)
...+-+|+|++++..+.+.
T Consensus 107 ---~~~~g~GlGL~i~~~~~~~ 125 (150)
T 1ysr_A 107 ---ASHSGSGLGLALVAQQAQL 125 (150)
T ss_dssp ----------CCCHHHHHHHHH
T ss_pred ---CCCCCCCcCHHHHHHHHHH
Confidence 0122379999999988653
No 45
>3ehg_A Sensor kinase (YOCF protein); GHL ATPase domain, transferase; HET: ATP; 1.74A {Bacillus subtilis}
Probab=97.82 E-value=6.9e-05 Score=65.27 Aligned_cols=46 Identities=20% Similarity=0.157 Sum_probs=36.9
Q ss_pred CchhHHHHHHHHhhHhhhccCCCCeEEEEEecC-C--eEEEEECCCCccCCc
Q 009294 105 RGLHHLVYEILDNAVDEAQAGYASNIEVALLAD-N--SVSVADNGRGIPIDL 153 (538)
Q Consensus 105 ~gL~~lv~EivdNAiDe~~~g~~~~I~V~i~~d-g--~isV~DnGrGIP~~~ 153 (538)
.-|..++.|+|+||+.++ .++.|.|.+..+ + .|+|.|||.|||.+.
T Consensus 39 ~~l~~il~nll~Na~k~~---~~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~ 87 (128)
T 3ehg_A 39 NILSMCLKEAVTNVVKHS---QAKTCRVDIQQLWKEVVITVSDDGTFKGEEN 87 (128)
T ss_dssp HHHHHHHHHHHHHHHHHT---CCSEEEEEEEEETTEEEEEEEESSCCCSCSS
T ss_pred HHHHHHHHHHHHHHHhcC---CCcEEEEEEEEeCCEEEEEEEECCcCcCccc
Confidence 456778999999999986 346888888743 3 699999999999775
No 46
>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A*
Probab=97.81 E-value=4.5e-05 Score=79.84 Aligned_cols=92 Identities=18% Similarity=0.398 Sum_probs=62.4
Q ss_pred CCchhHHHHHHHHhhHhhhccCC-----CCeEEEEEecCC---eEEEEECCCCccCCccCCCCcchHHHhhhhcccCCCC
Q 009294 104 PRGLHHLVYEILDNAVDEAQAGY-----ASNIEVALLADN---SVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKF 175 (538)
Q Consensus 104 ~~gL~~lv~EivdNAiDe~~~g~-----~~~I~V~i~~dg---~isV~DnGrGIP~~~h~~~g~~~~e~v~t~lhagskf 175 (538)
..-|.+++.+||+||+.+...+. ...|.|.+..++ .|+|.|||.|||.+. .+-+|.....+.+-
T Consensus 228 ~~~L~~il~NLl~NAik~~~~~~~~~~~~~~I~I~~~~~~~~v~i~V~D~G~GI~~~~--------~~~if~~f~~~~~~ 299 (394)
T 2e0a_A 228 PSHLHHMLFELFKNAMRATVEHQENQPSLTPIEVIVVLGKEDLTIKISDRGGGVPLRI--------IDRLFSYTYSTAPT 299 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTSSSCCCEEEEEEECSSEEEEEEEECSCCCCGGG--------HHHHTSTTCCSSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccCCCCCEEEEEEeCCCEEEEEEEeCCCCcCHHH--------HHHHhCcCccCCCC
Confidence 34689999999999999987654 457999988543 699999999999886 45577765444321
Q ss_pred CCCCCCeeeccccccchhhHHHhhcCeE
Q 009294 176 GGSSSGYSVSGGLHGVGLSVVNALSESL 203 (538)
Q Consensus 176 ~~~~~~yk~sgG~~GvGls~vnalS~~~ 203 (538)
...++......+-.|+||+++..+.+.+
T Consensus 300 ~~~~~~~~~~~~G~GLGL~i~~~i~~~~ 327 (394)
T 2e0a_A 300 PVMDNSRNAPLAGFGYGLPISRLYAKYF 327 (394)
T ss_dssp C------CCCSSCSSCHHHHHHHHHHHT
T ss_pred CCcCcCCCCCCCCcccCHHHHHHHHHHh
Confidence 0000001112233799999999887543
No 47
>3zxo_A Redox sensor histidine kinase response regulator; transferase; HET: MSE; 1.90A {Mycobacterium tuberculosis}
Probab=97.80 E-value=3.7e-05 Score=66.49 Aligned_cols=45 Identities=38% Similarity=0.561 Sum_probs=36.3
Q ss_pred CchhHHHHHHHHhhHhhhccCCCCeEEEEEecCC--eEEEEECCCCccCC
Q 009294 105 RGLHHLVYEILDNAVDEAQAGYASNIEVALLADN--SVSVADNGRGIPID 152 (538)
Q Consensus 105 ~gL~~lv~EivdNAiDe~~~g~~~~I~V~i~~dg--~isV~DnGrGIP~~ 152 (538)
.-|..++.|+|+||+.++ ....|.|.+..++ .|+|.|||.|||.+
T Consensus 42 ~~l~~il~nll~NA~k~~---~~~~i~i~~~~~~~~~i~v~D~G~gi~~~ 88 (129)
T 3zxo_A 42 DQAEAVVREAVSNAVRHA---AASTLTVRVKVDDDLCIEVTDNGRGMPDE 88 (129)
T ss_dssp HHHHHHHHHHHHHCCCCS---SCCEEEEEEEESSEEEEEEEECCCCCTTT
T ss_pred HHHHHHHHHHHHHHHHhC---CCceEEEEEEEcCCEEEEEecCCCCCCcc
Confidence 457788899999999886 3468999888554 58999999999865
No 48
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A
Probab=97.77 E-value=4.7e-05 Score=80.06 Aligned_cols=91 Identities=20% Similarity=0.347 Sum_probs=61.0
Q ss_pred CchhHHHHHHHHhhHhhhccCC-----CCeEEEEEecCC---eEEEEECCCCccCCccCCCCcchHHHhhhhcccCCCCC
Q 009294 105 RGLHHLVYEILDNAVDEAQAGY-----ASNIEVALLADN---SVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFG 176 (538)
Q Consensus 105 ~gL~~lv~EivdNAiDe~~~g~-----~~~I~V~i~~dg---~isV~DnGrGIP~~~h~~~g~~~~e~v~t~lhagskf~ 176 (538)
.-|.+++.+||+||+.+...|. ...|.|.+..++ .|+|.|||.|||.+. ++-+|.....+.+-.
T Consensus 242 ~~L~~il~NLl~NAik~t~~~~~~~~~~~~I~I~~~~~~~~v~i~V~D~G~GI~~e~--------~~~if~~f~~~~~~~ 313 (407)
T 2q8g_A 242 SHLYHMVFELFKNAMRATMEHHANRGVYPPIQVHVTLGNEDLTVKMSDRGGGVPLRK--------IDRLFNYMYSTAPRP 313 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTTCCCCCEEEEEEECSSEEEEEEEECSCCCCHHH--------HGGGGCTTTTCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHhhccccCCCCCCEEEEEEeCCCEEEEEEEecCCCCCHHH--------HHHHhCccccCCCCC
Confidence 4689999999999999987543 347999888543 599999999999876 344666654443311
Q ss_pred CCCCCeeeccccccchhhHHHhhcCeE
Q 009294 177 GSSSGYSVSGGLHGVGLSVVNALSESL 203 (538)
Q Consensus 177 ~~~~~yk~sgG~~GvGls~vnalS~~~ 203 (538)
..++......+-.|+||+++..+.+.+
T Consensus 314 ~~~~~~~~~~~G~GLGL~Ivr~i~~~~ 340 (407)
T 2q8g_A 314 RVETSRAVPLAGFGYGLPISRLYAQYF 340 (407)
T ss_dssp CSSCCSCCCSSCTTCHHHHHHHHHHHT
T ss_pred CccccCCCCCCCcCCCHHHHHHHHHHh
Confidence 000000111233799999999887543
No 49
>1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3
Probab=97.73 E-value=3.7e-05 Score=69.28 Aligned_cols=81 Identities=21% Similarity=0.309 Sum_probs=55.2
Q ss_pred CCCchhHHHHHHHHhhHhhhccCCCCeEEEEEecC-C--eEEEEECCCCccCCccCCCCcchHHHhhhhcccCCCCCCCC
Q 009294 103 GPRGLHHLVYEILDNAVDEAQAGYASNIEVALLAD-N--SVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSS 179 (538)
Q Consensus 103 ~~~gL~~lv~EivdNAiDe~~~g~~~~I~V~i~~d-g--~isV~DnGrGIP~~~h~~~g~~~~e~v~t~lhagskf~~~~ 179 (538)
+..-|..++.++|+||+.+. ...|.|.+..+ + .|+|.|||.|||.+..+ -+|.....+.+
T Consensus 44 d~~~l~~il~nll~NAik~~----~~~I~i~~~~~~~~~~i~i~D~G~gi~~~~~~--------~~f~~f~~~~~----- 106 (161)
T 1bxd_A 44 HPLSIKRAVANMVVNAARYG----NGWIKVSSGTEPNRAWFQVEDDGPGIAPEQRK--------HLFQPFVRGDS----- 106 (161)
T ss_dssp CHHHHHHHHHHHHHHHHTTC----CSCEEEEEEEETTEEEEEEEEESSCSCTTGGG--------CSSCCCCCCSC-----
T ss_pred CHHHHHHHHHHHHHHHHhhc----CCeEEEEEEEcCCEEEEEEEeCCCCCCHHHHH--------HhCCCceeCCC-----
Confidence 34568899999999999986 56788888743 3 59999999999988632 24443322211
Q ss_pred CCeeeccccccchhhHHHhhcCeE
Q 009294 180 SGYSVSGGLHGVGLSVVNALSESL 203 (538)
Q Consensus 180 ~~yk~sgG~~GvGls~vnalS~~~ 203 (538)
. . ..+-+|+|++++..+.+.+
T Consensus 107 -~-~-~~~g~GlGL~i~~~~~~~~ 127 (161)
T 1bxd_A 107 -A-R-TISGTGLGLAIVQRIVDNH 127 (161)
T ss_dssp -C-C-CCCCCSCCCCTTHHHHHHH
T ss_pred -C-C-CCCCcccCHHHHHHHHHHc
Confidence 0 1 1133799999888776543
No 50
>1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transfera; 1.60A {Escherichia coli} SCOP: d.122.1.3
Probab=97.71 E-value=4.6e-05 Score=67.92 Aligned_cols=78 Identities=27% Similarity=0.478 Sum_probs=45.9
Q ss_pred CCchhHHHHHHHHhhHhhhccCCCCeEEEEEecC-C------------eEEEEECCCCccCCccCCCCcchHHHhhhhcc
Q 009294 104 PRGLHHLVYEILDNAVDEAQAGYASNIEVALLAD-N------------SVSVADNGRGIPIDLHPATNKSALETVLTVLH 170 (538)
Q Consensus 104 ~~gL~~lv~EivdNAiDe~~~g~~~~I~V~i~~d-g------------~isV~DnGrGIP~~~h~~~g~~~~e~v~t~lh 170 (538)
..-|..++.++|+||+.+...+ ...|.|.+..+ + .|+|.|||.|||.+..+ -+|....
T Consensus 46 ~~~l~~il~nLl~NAik~~~~~-~~~I~i~~~~~~~~~~~~~~~~~~~~i~v~D~G~gi~~~~~~--------~lf~~~~ 116 (160)
T 1r62_A 46 PDQIEQVLLNIVRNALQALGPE-GGEIILRTRTAFQLTLHGERYRLAARIDVEDNGPGIPPHLQD--------TLFYPMV 116 (160)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGG-CEEEEEEEEEEEEEEETTEEEEEEEEEEEEEECTTC---------------------
T ss_pred HHHHHHHHHHHHHHHHHHhhcc-CCeEEEEEeccccccccccccccEEEEEEEeCCCCCCHHHHH--------HhhCccc
Confidence 4568999999999999987532 45787777632 1 48999999999987632 2443321
Q ss_pred cCCCCCCCCCCeeeccccccchhhHHHhhcCe
Q 009294 171 AGGKFGGSSSGYSVSGGLHGVGLSVVNALSES 202 (538)
Q Consensus 171 agskf~~~~~~yk~sgG~~GvGls~vnalS~~ 202 (538)
.+ ..+-+|+|++++..+.+.
T Consensus 117 ~~------------~~~g~GlGL~i~~~~~~~ 136 (160)
T 1r62_A 117 SG------------REGGTGLGLSIARNLIDQ 136 (160)
T ss_dssp -------------------CHHHHHHHHHHHH
T ss_pred cC------------CCCCCccCHHHHHHHHHH
Confidence 11 112379999999988654
No 51
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A*
Probab=97.67 E-value=8e-05 Score=77.65 Aligned_cols=92 Identities=24% Similarity=0.337 Sum_probs=60.1
Q ss_pred CCchhHHHHHHHHhhHhhhccCCC------CeEEEEEecCC---eEEEEECCCCccCCccCCCCcchHHHhhhhcccCCC
Q 009294 104 PRGLHHLVYEILDNAVDEAQAGYA------SNIEVALLADN---SVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGK 174 (538)
Q Consensus 104 ~~gL~~lv~EivdNAiDe~~~g~~------~~I~V~i~~dg---~isV~DnGrGIP~~~h~~~g~~~~e~v~t~lhagsk 174 (538)
+.-|.+++.+||+||+.+...|.. ..|.|.+..++ .|+|+|||.|||.+..+ -+|....++.+
T Consensus 236 ~~~L~~il~NLl~NAik~~~~~~~~~~~~~~~I~I~~~~~~~~v~i~V~D~G~GI~~~~~~--------~iF~~f~~~~~ 307 (388)
T 1gkz_A 236 PMPLDYILPELLKNAMRATMESHLDTPYNVPDVVITIANNDVDLIIRISDRGGGIAHKDLD--------RVMDYHFTTAE 307 (388)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTCTTCTTSCCCEEEEEEECSSEEEEEEECCSCCCCTTTTT--------TTTSTTCCCC-
T ss_pred HHHHHHHHHHHHHHHHHHhhccccCCCCCCCCEEEEEEeCCCEEEEEEEEeCCCcCHHHHH--------HhcCcccccCC
Confidence 456899999999999999876531 37999988543 59999999999988643 25555443332
Q ss_pred -----------CCCC---CCCeeeccccccchhhHHHhhcCeE
Q 009294 175 -----------FGGS---SSGYSVSGGLHGVGLSVVNALSESL 203 (538)
Q Consensus 175 -----------f~~~---~~~yk~sgG~~GvGls~vnalS~~~ 203 (538)
|+.- ........+-.|+||+++..+.+.+
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~GLGL~i~r~i~~~~ 350 (388)
T 1gkz_A 308 ASTQDPRISPLFGHLDMHSGGQSGPMHGFGFGLPTSRAYAEYL 350 (388)
T ss_dssp ------------------------CCSCSSCHHHHHHHHHHHT
T ss_pred CcccccccccchhhcccccccCCCCcCCccCCHHHHHHHHHHh
Confidence 1100 0000111123799999999987654
No 52
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A*
Probab=97.67 E-value=6e-05 Score=78.84 Aligned_cols=91 Identities=19% Similarity=0.347 Sum_probs=59.5
Q ss_pred CCchhHHHHHHHHhhHhhhccCC-----CCeEEEEEecCC---eEEEEECCCCccCCccCCCCcchHHHhhhhcccCCCC
Q 009294 104 PRGLHHLVYEILDNAVDEAQAGY-----ASNIEVALLADN---SVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKF 175 (538)
Q Consensus 104 ~~gL~~lv~EivdNAiDe~~~g~-----~~~I~V~i~~dg---~isV~DnGrGIP~~~h~~~g~~~~e~v~t~lhagskf 175 (538)
..-|.+++.+||+||+.+...|. ...|.|.+..++ .|+|.|||.|||.+. .+-+|.....+.+-
T Consensus 229 ~~~L~~il~NLl~NAik~~~~~~~~~~~~~~I~I~~~~~~~~v~i~V~D~G~GI~~~~--------~~~iF~~f~~~~~~ 300 (394)
T 2btz_A 229 PSHLYHMLFELFKNAMRATVESHESSLILPPIKVMVALGEEDLSIKMSDRGGGVPLRK--------IERLFSYMYSTAPT 300 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTTCSCCCCEEEEEEECSSEEEEEEEECSCCCCHHH--------HHHHTCTTTTCCC-
T ss_pred HHHHHHHHHHHHHHHHHHhhhccccCCCCCCEEEEEEeCCCEEEEEEEeCCCCCCHHH--------HHHHhcccccCCCC
Confidence 35689999999999999987664 246999888543 599999999999876 45577665443321
Q ss_pred CCCCCCeeeccccccchhhHHHhhcCeE
Q 009294 176 GGSSSGYSVSGGLHGVGLSVVNALSESL 203 (538)
Q Consensus 176 ~~~~~~yk~sgG~~GvGls~vnalS~~~ 203 (538)
...+ ......+=.|+||+++..+.+.+
T Consensus 301 ~~~~-~~~~~~~G~GLGL~i~~~i~~~~ 327 (394)
T 2btz_A 301 PQPG-TGGTPLAGFGYGLPISRLYAKYF 327 (394)
T ss_dssp --------------CCHHHHHHHHHHHT
T ss_pred CCcc-cCCCCCCCccCCHHHHHHHHHHh
Confidence 0000 00111223799999999887643
No 53
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A*
Probab=97.65 E-value=4e-05 Score=80.97 Aligned_cols=92 Identities=15% Similarity=0.334 Sum_probs=59.0
Q ss_pred CCchhHHHHHHHHhhHhhhccCC------CCeEEEEEecCC---eEEEEECCCCccCCccCCCCcchHHHhhhhcccCCC
Q 009294 104 PRGLHHLVYEILDNAVDEAQAGY------ASNIEVALLADN---SVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGK 174 (538)
Q Consensus 104 ~~gL~~lv~EivdNAiDe~~~g~------~~~I~V~i~~dg---~isV~DnGrGIP~~~h~~~g~~~~e~v~t~lhagsk 174 (538)
+.-|..++.+||+||+.+...|. ...|.|.+..++ .|+|.|||.|||.+. ++-+|.....+.+
T Consensus 251 ~~~L~~vl~NLl~NAik~~~~~~~~~~~~~~~I~I~~~~~~~~v~I~V~D~G~GI~~e~--------l~~iF~~f~~~~~ 322 (419)
T 1y8o_A 251 PSHLFHMLFELFKNSMRATVELYEDRKEGYPAVKTLVTLGKEDLSIKISDLGGGVPLRK--------IDRLFNYMYSTAP 322 (419)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCSSCCCCEEEEEEECSSEEEEEEEECSCCCCHHH--------HGGGGCTTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccCCCCCCEEEEEEeCCCEEEEEEEECCCCCCHHH--------HHHHhCcccccCC
Confidence 34689999999999999987653 447999988543 699999999999876 3446665444332
Q ss_pred CCCCCCCeeeccccccchhhHHHhhcCeE
Q 009294 175 FGGSSSGYSVSGGLHGVGLSVVNALSESL 203 (538)
Q Consensus 175 f~~~~~~yk~sgG~~GvGls~vnalS~~~ 203 (538)
-...++......+=.|+||+++..+.+.+
T Consensus 323 ~~~~~~~~~~~~~G~GLGL~I~k~iv~~~ 351 (419)
T 1y8o_A 323 RPSLEPTRAAPLAGFGYGLPISRLYARYF 351 (419)
T ss_dssp ----------CC--CTTHHHHHHHHHHHT
T ss_pred CCCccccCCCCcCCeecCHHHHHHHHHHh
Confidence 10000001111223799999999886543
No 54
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A*
Probab=97.64 E-value=9e-05 Score=71.96 Aligned_cols=85 Identities=22% Similarity=0.347 Sum_probs=55.5
Q ss_pred CCCchhHHHHHHHHhhHhhhccC-CCCeEEEEEec-CC--eEEEEECCCCccCCccCCCCcchHHHhhhhcccCCCCCCC
Q 009294 103 GPRGLHHLVYEILDNAVDEAQAG-YASNIEVALLA-DN--SVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGS 178 (538)
Q Consensus 103 ~~~gL~~lv~EivdNAiDe~~~g-~~~~I~V~i~~-dg--~isV~DnGrGIP~~~h~~~g~~~~e~v~t~lhagskf~~~ 178 (538)
+..-|..++..||+||+++...+ ....|.|.+.. ++ .|+|.|||.|||.+..+ -+|.....+..-
T Consensus 135 d~~~l~~il~NLl~NAik~~~~~~~~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~--------~if~~f~~~~~~--- 203 (258)
T 2c2a_A 135 DPTRIRQVLLNLLNNGVKYSKKDAPDKYVKVILDEKDGGVLIIVEDNGIGIPDHAKD--------RIFEQFYRVDSS--- 203 (258)
T ss_dssp CHHHHHHHHHHHHHHHHHTCCTTCTTCEEEEEEEEETTEEEEEEEECSSCCCGGGTT--------GGGSTTCCCC-----
T ss_pred CHHHHHHHHHHHHHHHHhcCcCCCCceeEEEEEecCCCeEEEEEEecCCCCCHHHHH--------hhccccccCCCC---
Confidence 44668999999999999987544 23568887774 33 59999999999988632 356543322110
Q ss_pred CCCeeeccccccchhhHHHhhcC
Q 009294 179 SSGYSVSGGLHGVGLSVVNALSE 201 (538)
Q Consensus 179 ~~~yk~sgG~~GvGls~vnalS~ 201 (538)
......| .|+||++|..+.+
T Consensus 204 --~~~~~~G-~GLGL~i~~~iv~ 223 (258)
T 2c2a_A 204 --LTYEVPG-TGLGLAITKEIVE 223 (258)
T ss_dssp ----------CCCTHHHHHHHHH
T ss_pred --CCCCCCC-cchHHHHHHHHHH
Confidence 0011223 7999999988754
No 55
>3zxq_A Hypoxia sensor histidine kinase response regulato; transferase; 1.90A {Mycobacterium tuberculosis}
Probab=97.64 E-value=8.3e-05 Score=63.91 Aligned_cols=46 Identities=28% Similarity=0.468 Sum_probs=36.1
Q ss_pred CchhHHHHHHHHhhHhhhccCCCCeEEEEEecCC--eEEEEECCCCccCCc
Q 009294 105 RGLHHLVYEILDNAVDEAQAGYASNIEVALLADN--SVSVADNGRGIPIDL 153 (538)
Q Consensus 105 ~gL~~lv~EivdNAiDe~~~g~~~~I~V~i~~dg--~isV~DnGrGIP~~~ 153 (538)
.-|..++.|+|+||+.++. .+.|.|.+..++ .|+|+|||.|||.+.
T Consensus 38 ~~l~~il~nll~Na~k~~~---~~~i~i~~~~~~~~~i~v~D~G~gi~~~~ 85 (124)
T 3zxq_A 38 NHAEAVLREAVSNAVRHAN---ATSLAINVSVEDDVRVEVVDDGVGISGDI 85 (124)
T ss_dssp HHHHHHHHHHHHHHHTCTT---CCEEEEEEEEEEEEEEEEEECCCSSCGGG
T ss_pred HHHHHHHHHHHHHHHHhCC---CCEEEEEEEeCCCEEEEEEECCCCCCccc
Confidence 4577888999999988863 457888887443 689999999999663
No 56
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus}
Probab=97.58 E-value=0.00012 Score=71.13 Aligned_cols=76 Identities=25% Similarity=0.499 Sum_probs=53.4
Q ss_pred CchhHHHHHHHHhhHhhhccCCCCeEEEEEecCC---eEEEEECCCCccCCccCCCCcchHHHhhhhcccCCCCCCCCCC
Q 009294 105 RGLHHLVYEILDNAVDEAQAGYASNIEVALLADN---SVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSG 181 (538)
Q Consensus 105 ~gL~~lv~EivdNAiDe~~~g~~~~I~V~i~~dg---~isV~DnGrGIP~~~h~~~g~~~~e~v~t~lhagskf~~~~~~ 181 (538)
.-|..++.++|+||+++...+ ..|.|.+..++ .|+|.|||.|||.+..+ -+|.... .
T Consensus 154 ~~l~~il~nLl~NA~~~~~~~--~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~--------~if~~~~------~---- 213 (268)
T 4ew8_A 154 KRLAQTLDHLVENALRQTPPG--GRVTLSARRALGEVRLDVSDTGRGVPFHVQA--------HIFDRFV------G---- 213 (268)
T ss_dssp HHHHHHHHHHHHHHHHHSCTT--CEEEEEEEECSSEEEEEEEESSCCCCHHHHT--------TTTSTTC------C----
T ss_pred HHHHHHHHHHHHHHHHhCCCC--CEEEEEEEecCCEEEEEEEcCCCCCCHHHHH--------HHHHHHh------c----
Confidence 458899999999999987443 57888888543 69999999999977522 2343321 1
Q ss_pred eeeccccccchhhHHHhhcCe
Q 009294 182 YSVSGGLHGVGLSVVNALSES 202 (538)
Q Consensus 182 yk~sgG~~GvGls~vnalS~~ 202 (538)
...+-.|+|+.++..+.+.
T Consensus 214 --~~~~g~GlGL~i~~~~~~~ 232 (268)
T 4ew8_A 214 --RDRGGPGLGLALVKALVEL 232 (268)
T ss_dssp --CSSCCCTTHHHHHHHHHHH
T ss_pred --CCCCCCcccHHHHHHHHHH
Confidence 1112379999998887643
No 57
>3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A*
Probab=97.46 E-value=0.00014 Score=68.42 Aligned_cols=45 Identities=20% Similarity=0.158 Sum_probs=34.2
Q ss_pred chhHHHHHHHHhhHhhhccCCCCeEEEEEecC-C--eEEEEECCCCccCCc
Q 009294 106 GLHHLVYEILDNAVDEAQAGYASNIEVALLAD-N--SVSVADNGRGIPIDL 153 (538)
Q Consensus 106 gL~~lv~EivdNAiDe~~~g~~~~I~V~i~~d-g--~isV~DnGrGIP~~~ 153 (538)
.|..++.|+|+||+.++ .++.|.|.+..+ + .|+|.|||.|||.+.
T Consensus 130 ~l~~il~nll~Na~k~~---~~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~ 177 (218)
T 3ehh_A 130 ILSMCLKEAVTNVVKHS---QAKTCRVDIQQLWKEVVITVSDDGTFKGEEN 177 (218)
T ss_dssp HHHHHHHHHHHHHHHHT---CCSEEEEEEEEETTEEEEEEEESSCCCC---
T ss_pred HHHHHHHHHHHHHHHhC---CCCEEEEEEEEeCCEEEEEEEECCcCCCCCC
Confidence 46778999999999886 345888888743 3 699999999999764
No 58
>1i58_A Chemotaxis protein CHEA; beta-alpha sandwich, signaling protein, transferase; HET: ACP ADP; 1.60A {Thermotoga maritima} SCOP: d.122.1.3 PDB: 1i59_A* 1i5a_A* 1i5b_A* 1i5c_A* 1i5d_A*
Probab=97.42 E-value=0.00016 Score=66.87 Aligned_cols=48 Identities=23% Similarity=0.372 Sum_probs=37.2
Q ss_pred chhHHHHHHHHhhHhhhcc----------CCCCeEEEEEecC-C--eEEEEECCCCccCCc
Q 009294 106 GLHHLVYEILDNAVDEAQA----------GYASNIEVALLAD-N--SVSVADNGRGIPIDL 153 (538)
Q Consensus 106 gL~~lv~EivdNAiDe~~~----------g~~~~I~V~i~~d-g--~isV~DnGrGIP~~~ 153 (538)
-+..++.++|+||+.++.. .....|.|.+..+ + .|+|.|||.|||.+.
T Consensus 47 ~l~~il~nLl~NAik~~~~~~~~~~~~~~~~~~~I~I~~~~~~~~~~i~V~D~G~Gi~~~~ 107 (189)
T 1i58_A 47 EIGEPLLHLLRNAIDHGIEPKEERIAKGKPPIGTLILSARHEGNNVVIEVEDDGRGIDKEK 107 (189)
T ss_dssp HHHHHHHHHHHHHHHHTSCCHHHHHHHTSCSSEEEEEEEEEETTEEEEEEEECSSCCCHHH
T ss_pred HHHHHHHHHHHHHHHhhhccccccccccCCCCCeEEEEEEecCCEEEEEEEeCCCCcCHHH
Confidence 4555699999999999742 2456888888743 3 599999999999774
No 59
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli}
Probab=97.42 E-value=0.00013 Score=68.51 Aligned_cols=77 Identities=31% Similarity=0.366 Sum_probs=41.5
Q ss_pred CchhHHHHHHHHhhHhhhccCCCCeEEEEEecCCeEEEEECCCCccCCccCCCCcchHHHhhhhcccCCCCCCCCCCeee
Q 009294 105 RGLHHLVYEILDNAVDEAQAGYASNIEVALLADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSV 184 (538)
Q Consensus 105 ~gL~~lv~EivdNAiDe~~~g~~~~I~V~i~~dg~isV~DnGrGIP~~~h~~~g~~~~e~v~t~lhagskf~~~~~~yk~ 184 (538)
.-|..++.++|+||+.+... ...|.|.+..++ |+|+|||.|||.+..+ -+|.....+.+ .
T Consensus 116 ~~l~~il~nLl~NAi~~~~~--~~~i~i~~~~~~-i~V~D~G~Gi~~~~~~--------~if~~f~~~~~---------~ 175 (222)
T 3jz3_A 116 LLLSLLVRNLLDNAVRYSPQ--GSVVDVTLNADN-FIVRDNGPGVTPEALA--------RIGERFYRPPG---------Q 175 (222)
T ss_dssp HHHHHHHHHHHHHHHHTCCT--TCEEEEEECSSE-EEEECSCC-------------------------------------
T ss_pred HHHHHHHHHHHHHHHHcCCC--CCeEEEEEccCe-EEEEECCCCCCHHHHH--------HHHhhhccCCC---------C
Confidence 35888999999999998633 346888887665 9999999999988633 34544322111 1
Q ss_pred ccccccchhhHHHhhcC
Q 009294 185 SGGLHGVGLSVVNALSE 201 (538)
Q Consensus 185 sgG~~GvGls~vnalS~ 201 (538)
..+-.|+|++++..+.+
T Consensus 176 ~~~g~GlGL~i~~~i~~ 192 (222)
T 3jz3_A 176 TATGSGLGLSIVQRIAK 192 (222)
T ss_dssp ------CTHHHHHHHHH
T ss_pred CCCcccccHHHHHHHHH
Confidence 11237999999988854
No 60
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=97.39 E-value=0.00012 Score=73.64 Aligned_cols=74 Identities=20% Similarity=0.360 Sum_probs=49.3
Q ss_pred CchhHHHHHHHHhhHhhhccCCCCeEEEEEecC-C--eEEEEECCCCccCCccCCCCcchHHHhhhhcccCCCCCCCCCC
Q 009294 105 RGLHHLVYEILDNAVDEAQAGYASNIEVALLAD-N--SVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSG 181 (538)
Q Consensus 105 ~gL~~lv~EivdNAiDe~~~g~~~~I~V~i~~d-g--~isV~DnGrGIP~~~h~~~g~~~~e~v~t~lhagskf~~~~~~ 181 (538)
.-|..++.++|+||+++.. ....|.|.+..+ + .|+|.|||.|||.+..+ -+|....+ ++
T Consensus 243 ~~l~~vl~nLl~NA~k~~~--~~~~i~i~~~~~~~~~~i~v~D~G~Gi~~~~~~--------~if~~f~~-~~------- 304 (349)
T 3a0r_A 243 TRIKQVLINLVQNAIEATG--ENGKIKITSEDMYTKVRVSVWNSGPPIPEELKE--------KIFSPFFT-TK------- 304 (349)
T ss_dssp HHHHHHHHHHHTHHHHTTC--TTCCEEEEEEEETTEEEEEEEEESCCCCGGGGT--------TTSSSCCC-C--------
T ss_pred HHHHHHHHHHHHHHHHhcc--CCCEEEEEEEecCCEEEEEEEECCCCCChHHHh--------hcCCCCcc-CC-------
Confidence 4578899999999999863 245788888743 3 69999999999988643 24443211 11
Q ss_pred eeeccccccchhhHHHhhc
Q 009294 182 YSVSGGLHGVGLSVVNALS 200 (538)
Q Consensus 182 yk~sgG~~GvGls~vnalS 200 (538)
.+-.|+|++++.-+.
T Consensus 305 ----~~g~GlGL~i~~~~v 319 (349)
T 3a0r_A 305 ----TQGTGLGLSICRKII 319 (349)
T ss_dssp ---------CCCTHHHHHH
T ss_pred ----CCCccchHHHHHHHH
Confidence 122799999988764
No 61
>1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal transduction, multi-domai protein, transferase; 2.60A {Thermotoga maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3 PDB: 2ch4_A* 3ur1_A
Probab=97.36 E-value=0.00018 Score=75.10 Aligned_cols=48 Identities=23% Similarity=0.372 Sum_probs=36.7
Q ss_pred chhHHHHHHHHhhHhhhcc----------CCCCeEEEEEecC-C--eEEEEECCCCccCCc
Q 009294 106 GLHHLVYEILDNAVDEAQA----------GYASNIEVALLAD-N--SVSVADNGRGIPIDL 153 (538)
Q Consensus 106 gL~~lv~EivdNAiDe~~~----------g~~~~I~V~i~~d-g--~isV~DnGrGIP~~~ 153 (538)
-+..++.++|.||+|++.. .....|.|.+..+ + .|+|+|||+|||.+.
T Consensus 106 ~l~~~l~nLl~NAi~h~~e~~~~r~~~gk~~~g~I~i~~~~~~~~v~i~V~D~G~Gi~~~~ 166 (379)
T 1b3q_A 106 EIGEPLLHLLRNAIDHGIEPKEERIAKGKPPIGTLILSARHEGNNVVIEVEDDGRGIDKEK 166 (379)
T ss_dssp HHHHHHHHHHHHHHHHTSCCHHHHHHTTCCSSEEEEEEEEEETTEEEEEEEECSCCCCHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHhcCCCCCcEEEEEEEEeCCEEEEEEEECCCCCCHHH
Confidence 3445599999999999742 2356788888743 3 599999999999875
No 62
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus}
Probab=97.28 E-value=0.00039 Score=66.16 Aligned_cols=78 Identities=19% Similarity=0.317 Sum_probs=53.1
Q ss_pred CCchhHHHHHHHHhhHhhhccCCCCeEEEEEec-CC--eEEEEECCCCccCCccCCCCcchHHHhhhhcccCCCCCCCCC
Q 009294 104 PRGLHHLVYEILDNAVDEAQAGYASNIEVALLA-DN--SVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSS 180 (538)
Q Consensus 104 ~~gL~~lv~EivdNAiDe~~~g~~~~I~V~i~~-dg--~isV~DnGrGIP~~~h~~~g~~~~e~v~t~lhagskf~~~~~ 180 (538)
..-|..++.++|+||+.+... ...|.|.+.. ++ .|+|.|||.|||.+. .+-+|.....+
T Consensus 121 ~~~l~~il~nLl~NA~~~~~~--~~~i~i~~~~~~~~~~i~i~D~G~gi~~~~--------~~~if~~~~~~-------- 182 (244)
T 3d36_A 121 REKFRQCLLNVMKNAIEAMPN--GGTLQVYVSIDNGRVLIRIADTGVGMTKEQ--------LERLGEPYFTT-------- 182 (244)
T ss_dssp HHHHHHHHHHHHHHHHHTCTT--CEEEEEEEEEETTEEEEEEEECSSCCCHHH--------HHHTTSTTCCS--------
T ss_pred HHHHHHHHHHHHHHHHHhccC--CCeEEEEEEEeCCEEEEEEEecCCCCCHHH--------HHHHhcccccC--------
Confidence 456889999999999998632 4578887774 33 699999999999765 33344432111
Q ss_pred CeeeccccccchhhHHHhhcCe
Q 009294 181 GYSVSGGLHGVGLSVVNALSES 202 (538)
Q Consensus 181 ~yk~sgG~~GvGls~vnalS~~ 202 (538)
+.. +-+|+|++++..+.+.
T Consensus 183 --~~~-~g~GlGL~i~~~i~~~ 201 (244)
T 3d36_A 183 --KGV-KGTGLGMMVVYRIIES 201 (244)
T ss_dssp --SGG-GCCSCHHHHHHHHHHH
T ss_pred --CCC-CCcchhHHHHHHHHHH
Confidence 011 2379999998887653
No 63
>3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor antagonist, phosphatase serine kinase, ATPase, unknown function; 2.60A {Mycobacterium tuberculosis}
Probab=96.93 E-value=0.0022 Score=67.25 Aligned_cols=83 Identities=25% Similarity=0.262 Sum_probs=55.3
Q ss_pred chhHHHHHHHHhhHhhhccC-CCCeEEEEEec--CC--eEEEEECCCCccCCccCCCCcchHHHhhhhcccCCCCCCCCC
Q 009294 106 GLHHLVYEILDNAVDEAQAG-YASNIEVALLA--DN--SVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSS 180 (538)
Q Consensus 106 gL~~lv~EivdNAiDe~~~g-~~~~I~V~i~~--dg--~isV~DnGrGIP~~~h~~~g~~~~e~v~t~lhagskf~~~~~ 180 (538)
-+.-++.|++.||+.++... ....|.|.+.. ++ .|+|+|+|+|+|... +
T Consensus 297 ~~~l~v~El~~Nav~Ha~~~~~~g~i~v~~~~~~~~~l~i~V~D~G~g~~~~~-----------------------~--- 350 (399)
T 3ke6_A 297 DIVHAISEFVENAVEHGYATDVSKGIVVAAALAGDGNVRASVIDRGQWKDHRD-----------------------G--- 350 (399)
T ss_dssp HHHHHHHHHHHHHHHHBCCSCCTTCEEEEEEECTTSEEEEEEEESCBC--------------------------------
T ss_pred HHHHHHHHHHHHHHHhcccCCCCceEEEEEEEcCCCEEEEEEEECCCCCCCCC-----------------------C---
Confidence 35568999999999998643 35678888773 34 699999999998540 0
Q ss_pred CeeeccccccchhhHHHhhcCeEEEEEEeCCEEEEEEEe
Q 009294 181 GYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQKYS 219 (538)
Q Consensus 181 ~yk~sgG~~GvGls~vnalS~~~~V~t~~~g~~y~q~f~ 219 (538)
.+-+|.|+.++..++..+.+....+|+...++|.
T Consensus 351 -----~~~~G~GL~lv~~l~~~~~~~~~~~G~~v~~~~~ 384 (399)
T 3ke6_A 351 -----ARGRGRGLAMAEALVSEARIMHGAGGTTATLTHR 384 (399)
T ss_dssp -----------CHHHHHTTSSEEEEEEETTEEEEEEEEE
T ss_pred -----CCCCCcHHHHHHHHHHheeeEECCCcEEEEEEEE
Confidence 0236899999999999888765555666666664
No 64
>4fpp_A Phosphotransferase; four helix bundle, bergerat fold, CCKA, CTRA, CPDR, bacterial cytoplasme; 2.20A {Caulobacter crescentus} PDB: 4fmt_A
Probab=96.56 E-value=0.0025 Score=62.00 Aligned_cols=75 Identities=23% Similarity=0.156 Sum_probs=49.2
Q ss_pred chhHHHHHHHHhhHhhhccCCCCeEEEEEec-CC--eEEEEECCCCccCCccCCCCcchHHHhhhhcccCCCCCCCCCCe
Q 009294 106 GLHHLVYEILDNAVDEAQAGYASNIEVALLA-DN--SVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSGY 182 (538)
Q Consensus 106 gL~~lv~EivdNAiDe~~~g~~~~I~V~i~~-dg--~isV~DnGrGIP~~~h~~~g~~~~e~v~t~lhagskf~~~~~~y 182 (538)
-+..++.-+|.||+++...| ..|.|.+.. ++ .|+|.|+|.||+++.+ ..+-+|.. |...
T Consensus 146 ~~~qvl~NLl~NA~~a~~~g--g~I~v~~~~~~~~~~i~V~D~G~Gi~i~~~------~~~~~f~~------~~~~---- 207 (247)
T 4fpp_A 146 PSSRAVLNIAQIAASALPAG--GVATVKGVAADGRFSIIADAKGPRARLRPE------VLAGLKGE------PLAE---- 207 (247)
T ss_dssp HHHHHHHHHHHHHHTTCTTC--CEEEEEEEEETTEEEEEEEEESTTCCCCHH------HHHHHTTC------CCCS----
T ss_pred HHHHHHHHHHHHHHHhcCCC--CeEEEEEEEECCEEEEEEEEcCCCCCCCHH------HHHHhcCC------CCCC----
Confidence 46678888888988876443 478888874 33 6999999999987632 23333322 2111
Q ss_pred eeccccccchhhHHHhhc
Q 009294 183 SVSGGLHGVGLSVVNALS 200 (538)
Q Consensus 183 k~sgG~~GvGls~vnalS 200 (538)
+ ..| +|+||++|-.+-
T Consensus 208 ~-~~G-~GLGLai~~~iv 223 (247)
T 4fpp_A 208 G-LGG-PWVQAAYLNALV 223 (247)
T ss_dssp S-CHH-HHHHHHHHHHHH
T ss_pred C-CCC-ccHHHHHHHHHH
Confidence 1 224 699999987764
No 65
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=85.96 E-value=0.77 Score=43.10 Aligned_cols=41 Identities=17% Similarity=0.125 Sum_probs=28.1
Q ss_pred HHHHhhHhhhcc-CCCCeEEEEEecC--C---eEEEEECCCCccCCc
Q 009294 113 EILDNAVDEAQA-GYASNIEVALLAD--N---SVSVADNGRGIPIDL 153 (538)
Q Consensus 113 EivdNAiDe~~~-g~~~~I~V~i~~d--g---~isV~DnGrGIP~~~ 153 (538)
+.+.||++++.. .....|.|.|..+ + .|.|.|+|++||.+.
T Consensus 115 ~na~~Ai~~~~~~~~~~~I~i~i~~~~~~~~l~i~V~d~G~~i~~e~ 161 (192)
T 1ixm_A 115 RKLFHLFDQAVSRESENHLTVSLQTDHPDRQLILYLDFHGAFADPSA 161 (192)
T ss_dssp HHHHHHHHHHBCTTSCCEEEEEEECCCSSSSCEEEEEEESCBSCGGG
T ss_pred HHHHHHHHhhhccCCCCeEEEEEEEecCCCEEEEEEEeCCCCCCHHH
Confidence 333444444322 3467899998865 3 699999999999875
No 66
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}
Probab=85.67 E-value=5.1 Score=43.37 Aligned_cols=99 Identities=14% Similarity=0.262 Sum_probs=65.4
Q ss_pred eEEEEEEEeccCC---CCceEEEeeCceecc-CCccchHHHHHHHHHHHHHHH-HhcCCCCCcCCCCCHHhHhccceEEE
Q 009294 330 ITIDLALQWCSDA---YSDTMLGYANSIRTI-DGGTHIEGVKASLTRTLNSLG-KKSKTVKDKDISLSGEHVREGLTCII 404 (538)
Q Consensus 330 i~veval~~s~~~---~~~~~~SFVN~I~T~-~GGTHv~g~~~al~k~in~~~-kk~~~~k~~~~~l~~~dIregL~~~v 404 (538)
..||+|+.|--+. -.-.++-|+|-+|.. +.| ..++++++...- +..++ ++ =...+.++|
T Consensus 350 f~vE~~~a~gg~~~~~~~~~i~r~aNrvpl~~~~~------~~~~~~~~~~~~w~~y~~------~~----~~~~~~~~v 413 (530)
T 2zbk_B 350 FIVEAGVAFGGSIPVGEEPIVLRYANKIPLIYDEK------SDVIWKVVEELDWKRYGI------ES----DQYQMVVMV 413 (530)
T ss_dssp EEEEEEEEESTTSCCBSSCEEEEEETTEEECTTGG------GCHHHHHHHHSCTTSSSC------CC----SSBCEEEEE
T ss_pred EEEEEEeeccCCCCCCCCceEEEEecCCceeecCC------cchhhhhhccCChhhcCc------CC----CCCCEEEEE
Confidence 5688999886211 123799999999986 444 356677664321 11222 11 013678999
Q ss_pred EEeecCCCCCCccccccCC-hhhhhhhhhHHH---HHHHHHHHh
Q 009294 405 SVRVPNPEFEGQTKTRLGN-PEVRKVVDQSVQ---EYLTEYLEL 444 (538)
Q Consensus 405 svki~nP~FegQTKekL~n-~ev~~~v~~~v~---~~l~~~l~~ 444 (538)
++--++-.|.|-.||.+.+ +|+...+...+. .+|..||.+
T Consensus 414 ~i~st~vp~~~~~Ke~i~~~~ei~~ei~~a~~~~~r~l~~~~~~ 457 (530)
T 2zbk_B 414 HLCSTKIPYKSAGKESIAEVENIEKEIKNALMEVARKLKQYLSE 457 (530)
T ss_dssp EEEESSCCBSSSSCSCBCCCHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred EeccCCCCcCCCCccccCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999886 666655555543 466667754
No 67
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei}
Probab=53.91 E-value=39 Score=37.19 Aligned_cols=102 Identities=16% Similarity=0.350 Sum_probs=61.2
Q ss_pred eEEEEEEEeccC---CCCceEEEeeCceec-cCCccchHHHHHHHHHHHHHHH-HhcCCCCCcCCCCCHHhHh-ccceEE
Q 009294 330 ITIDLALQWCSD---AYSDTMLGYANSIRT-IDGGTHIEGVKASLTRTLNSLG-KKSKTVKDKDISLSGEHVR-EGLTCI 403 (538)
Q Consensus 330 i~veval~~s~~---~~~~~~~SFVN~I~T-~~GGTHv~g~~~al~k~in~~~-kk~~~~k~~~~~l~~~dIr-egL~~~ 403 (538)
..||+|+.|--+ ...-.++=|+|-||- -+.|. .++++++...- +..++.. .+..+- .-+.+|
T Consensus 353 fivE~~ia~gg~~~~~~~~~~~rfanrvpll~~~g~------~~~t~~~~~~~w~~y~~~~------~~~~~p~~~~~~~ 420 (621)
T 2q2e_B 353 FVVEVGMAYGGNLPKEEKISIMRFANRVPLLYQQGG------CVTTHAVEDIKWKQYGLNQ------PGGGIPVGPVILL 420 (621)
T ss_dssp EEEEEEEEESSSSCSSSCCCEEEEETTBCCCSCCTT------CHHHHHHHHSCCTTTTCCC------CSSSSCCSSCCEE
T ss_pred eEEEEeeecCCCCCCCCceeEEEEccCCceeecCCc------cHHHHHHHhCChhhcCcCC------CCCCCCCCCEEEE
Confidence 568889888621 112479999999983 34444 45677665432 1222210 000111 246899
Q ss_pred EEEeecCCCCCCccccccCC-hhhhhhhhhHHH---HHHHHHHH
Q 009294 404 ISVRVPNPEFEGQTKTRLGN-PEVRKVVDQSVQ---EYLTEYLE 443 (538)
Q Consensus 404 vsvki~nP~FegQTKekL~n-~ev~~~v~~~v~---~~l~~~l~ 443 (538)
|++--.+-.|.|--||.+.+ ||+..-+...+. .+|..||.
T Consensus 421 v~~~st~vp~~~~~ke~ia~~~ei~~ei~~a~~~~~r~l~~~l~ 464 (621)
T 2q2e_B 421 IHVASINVPFTSESKDAIADIPVIKEEIDLAIKEVARKLKHYLS 464 (621)
T ss_dssp EEEECSSCCBSSSSSSSBCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeecCCCcCCcchhhhcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999985 455544444332 34555543
No 68
>3hqc_A Tensin-like C1 domain-containing phosphatase; TENC1, phosphotyrosine binding domain, PTB, TNS2, KIAA1075, struct genomics, PSI-2; 1.80A {Homo sapiens} SCOP: b.55.1.2 PDB: 2loz_A 2dkq_A
Probab=35.03 E-value=30 Score=31.31 Aligned_cols=48 Identities=19% Similarity=0.296 Sum_probs=28.1
Q ss_pred eeeccCCCCchhHHHHHHHHhhHhhhcc---C-CCCeEEEEEecCCeEEEEECCC
Q 009294 97 MYIGSTGPRGLHHLVYEILDNAVDEAQA---G-YASNIEVALLADNSVSVADNGR 147 (538)
Q Consensus 97 mYIGs~~~~gL~~lv~EivdNAiDe~~~---g-~~~~I~V~i~~dg~isV~DnGr 147 (538)
+|+||++...|.- .|+|..|++..+. + ..+.|...|..+| |++.||-|
T Consensus 19 ~yLgSvevesltG--~~av~kAv~~~l~~~~~~~~t~V~fkVS~qG-ItLtD~~r 70 (157)
T 3hqc_A 19 LYLTSVETESLTG--PQAVARASSAALSCSPRPTPAVVHFKVSAQG-ITLTDNQR 70 (157)
T ss_dssp EEEEEEECTTCCH--HHHHHHHHHHHHHCC---CCEEEEEEEETTE-EEEEEEET
T ss_pred EEeceEecCCCCC--hHHHHHHHHHHHhcCCCCCCeEEEEEEeCCC-ceEEeccc
Confidence 7999998654321 1344444443332 1 2445666666654 99999876
No 69
>1wvh_A Tensin, tensin1; beta sandwich, cell adhesion; 1.50A {Gallus gallus} SCOP: b.55.1.2 PDB: 2gjy_A
Probab=30.97 E-value=46 Score=29.21 Aligned_cols=50 Identities=22% Similarity=0.332 Sum_probs=27.9
Q ss_pred eeeccCCCCchhHHHHHHHHhhHhhhcc----CCCCeEEEEEecCCeEEEEECCCCc
Q 009294 97 MYIGSTGPRGLHHLVYEILDNAVDEAQA----GYASNIEVALLADNSVSVADNGRGI 149 (538)
Q Consensus 97 mYIGs~~~~gL~~lv~EivdNAiDe~~~----g~~~~I~V~i~~dg~isV~DnGrGI 149 (538)
+|+||++...|.- .|+|--|+...+. -..+.+...|..+ .|++.||.|-.
T Consensus 7 ~yLgSvevesltG--~~av~~Ai~~~l~~~~~~~~t~vh~kVS~q-GItLtD~~rk~ 60 (134)
T 1wvh_A 7 LFINSVEMESLTG--PQAISKAVAETLVADPTPTATIVHFKVSAQ-GITLTDNQRKL 60 (134)
T ss_dssp EEEEEEEEETCCH--HHHHHHHHHHHHTCSSCCCCEEEEEEEETT-EEEEEESSSCS
T ss_pred EEEEEEEecCCcC--HHHHHHHHHHHHhcCCCCCCeEEEEEEEcC-CCeEEccCcce
Confidence 6999998543322 1333333333331 1244555666655 49999997644
Done!