RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 009294
(538 letters)
>d1ei1a2 d.122.1.2 (A:2-220) DNA gyrase B {Escherichia coli [TaxId:
562]}
Length = 219
Score = 239 bits (610), Expect = 1e-76
Identities = 109/229 (47%), Positives = 147/229 (64%), Gaps = 11/229 (4%)
Query: 74 SKTYGSEQIQVLEGLEAVRKRPAMYIGSTGP-RGLHHLVYEILDNAVDEAQAGYASNIEV 132
S + S I+VL+GL+AVRKRP MYIG T GLHH+V+E++DNA+DEA AG+ I V
Sbjct: 1 SNSSDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 60
Query: 133 ALLADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVG 192
+ ADNSVSV D+GRGIP +HP SA E ++TVLHAGGKF +S Y VSGGLHGVG
Sbjct: 61 TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNS--YKVSGGLHGVG 118
Query: 193 LSVVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQV 252
+SVVNALS+ LE+ + R+G + Q Y G P L ++ GT +RFWP +
Sbjct: 119 VSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLA----VTGETEKTGTMVRFWPSLET 174
Query: 253 FTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAG 301
FT +F++ +A R+REL+FL+ ++I LR + E + + G
Sbjct: 175 FTNVTEFEYEILAKRLRELSFLDSGVSIRLRDKRDGKED----HFHYEG 219
>d1kija2 d.122.1.2 (A:9-220) DNA gyrase B {Thermus thermophilus
[TaxId: 274]}
Length = 212
Score = 219 bits (559), Expect = 3e-69
Identities = 103/215 (47%), Positives = 134/215 (62%), Gaps = 5/215 (2%)
Query: 82 IQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLADNSVS 141
I+VL+GLE VR RPAMYIG TG G HHL EILDNAVDEA AGYA+ I V L D S++
Sbjct: 2 IRVLKGLEGVRHRPAMYIGGTGVEGYHHLFKEILDNAVDEALAGYATEILVRLNEDGSLT 61
Query: 142 VADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSE 201
V DNGRGIP+DL P K A+E + LH+GGKF + Y VSGGLHGVG SVVNALSE
Sbjct: 62 VEDNGRGIPVDLMPEEGKPAVEVIYNTLHSGGKFEQGA--YKVSGGLHGVGASVVNALSE 119
Query: 202 SLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDH 261
V V+R+G + +SRG+ L + + GTR+ F PD ++F ++FD
Sbjct: 120 WTVVEVFREGKHHRIAFSRGEVTEPLRVV--GEAPRGKTGTRVTFKPDPEIFGN-LRFDP 176
Query: 262 NTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNE 296
+ I R+RE+A+L L + + E+ ++
Sbjct: 177 SKIRARLREVAYLVAGLKLVFQDRQHGKEEVFLDK 211
>d1s14a_ d.122.1.2 (A:) Topoisomerase IV subunit B {Escherichia coli
[TaxId: 562]}
Length = 168
Score = 186 bits (473), Expect = 4e-57
Identities = 62/195 (31%), Positives = 96/195 (49%), Gaps = 28/195 (14%)
Query: 102 TGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLADNSVSVADNGRGIPIDLHPATNKSA 161
T +HL E++DN+VDEA AG+A ++V L AD S+ V D+GRG+P+D+HP A
Sbjct: 1 TDTTRPNHLGQEVIDNSVDEALAGHAKRVDVILHADQSLEVIDDGRGMPVDIHPEEGVPA 60
Query: 162 LETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRG 221
+E +L + SVVNALS+ +EV V RDG Y+ + G
Sbjct: 61 VELILCI-------------------------SVVNALSKRVEVNVRRDGQVYNIAFENG 95
Query: 222 KPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIA 281
+ V L K GT + FWPD+ F + +F + + ++ A L P + I
Sbjct: 96 EKVQDLQVV--GTCGKRNTGTSVHFWPDETFFDS-PRFSVSRLTHVLKAKAVLCPGVEIT 152
Query: 282 LRKEDSDPEKNQYNE 296
+ E ++ E+ +
Sbjct: 153 FKDEINNTEQRWCYQ 167
>d1ei1a1 d.14.1.3 (A:221-392) DNA gyrase B {Escherichia coli [TaxId:
562]}
Length = 172
Score = 151 bits (383), Expect = 5e-44
Identities = 66/172 (38%), Positives = 110/172 (63%), Gaps = 2/172 (1%)
Query: 302 GLEEYVQWLNTDKKPLH-DVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGG 360
G++ +V++LN +K P+H ++ F + DGI +++ALQW D + + + + N+I DGG
Sbjct: 1 GIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWN-DGFQENIYCFTNNIPQRDGG 59
Query: 361 THIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTR 420
TH+ G +A++TRTLN+ K K +S +G+ REGL ++SV+VP+P+F QTK +
Sbjct: 60 THLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDK 119
Query: 421 LGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDL 472
L + EV+ V+Q + E L EYL +P ++ K + A +A AA+RAR++
Sbjct: 120 LVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREM 171
>d1kija1 d.14.1.3 (A:221-392) DNA gyrase B {Thermus thermophilus
[TaxId: 274]}
Length = 172
Score = 150 bits (379), Expect = 2e-43
Identities = 62/173 (35%), Positives = 98/173 (56%), Gaps = 2/173 (1%)
Query: 302 GLEEYVQWLNTDKKPLHD-VVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGG 360
G+ + + L + L++ R + +++ Y+ +L YAN I T DGG
Sbjct: 1 GVASFAKALAEGEDLLYEKPFLIRGTHGEVEVEVGFLHT-QGYNAEILTYANMIPTRDGG 59
Query: 361 THIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTR 420
TH+ K++ +R LN KK+ K+K +G+ + EGL ++SV++PNP+FEGQTK +
Sbjct: 60 THLTAFKSAYSRALNQYAKKAGLNKEKGPQPTGDDLLEGLYAVVSVKLPNPQFEGQTKGK 119
Query: 421 LGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLV 473
L NPE V Q V E L E LE +P + ++ K+L A +A AA++AR+LV
Sbjct: 120 LLNPEAGTAVGQVVYERLLEILEENPRIAKAVYEKALRAAQAREAARKARELV 172
>d1s16a1 d.14.1.3 (A:1217-1383) Topoisomerase IV subunit B
{Escherichia coli [TaxId: 562]}
Length = 167
Score = 145 bits (367), Expect = 7e-42
Identities = 37/166 (22%), Positives = 72/166 (43%), Gaps = 2/166 (1%)
Query: 302 GLEEYVQWLNTDKKPLHD-VVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGG 360
GL +Y+ L + D +D AL W + Y N I T+ GG
Sbjct: 2 GLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGG 61
Query: 361 THIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTR 420
TH+ G++ L + + + + + LS E + + ++SV++ +P+F GQTK R
Sbjct: 62 THVNGLRQGLLDAMREFCEYRNILP-RGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKER 120
Query: 421 LGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAA 466
L + + V V++ +L + + + ++S+ + + A
Sbjct: 121 LSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRA 166
>d1pvga2 d.122.1.2 (A:7-245) DNA topoisomerase II {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 239
Score = 146 bits (370), Expect = 2e-41
Identities = 53/237 (22%), Positives = 91/237 (38%), Gaps = 35/237 (14%)
Query: 79 SEQIQVLEGLEAVRKRPAMYIGSTGPR-----------------------GLHHLVYEIL 115
S++ Q + LE + KRP YIGS + GL + EIL
Sbjct: 3 SDKYQKISQLEHILKRPDTYIGSVETQEQLQWIYDEETDCMIEKNVTIVPGLFKIFDEIL 62
Query: 116 DNAVDEAQAGYA-SNIEVALLA-DNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAGG 173
NA D + I+V + A ++++ V ++G+GIPI++H N E + L
Sbjct: 63 VNAADNKVRDPSMKRIDVNIHAEEHTIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTSS 122
Query: 174 KFGGSSSGYSVSGGLHGVGLSVVNALSESLEV--TVWRDGMEYHQKYSRGKPVTTLTCHV 231
+ V+GG +G G + N S + G +Y QK+ +
Sbjct: 123 NY--DDDEKKVTGGRNGYGAKLCNIFSTEFILETADLNVGQKYVQKWENNMSICHPPKI- 179
Query: 232 LPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLN---PKLTIALRKE 285
K T++ F PD F + D++ + R + +N + + L +
Sbjct: 180 -TSYKKGPSYTKVTFKPDLTRFGM-KELDNDILGVMRRRVYDINGSVRDINVYLNGK 234
>d1pvga1 d.14.1.3 (A:246-406) DNA topoisomerase II {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 161
Score = 87.5 bits (216), Expect = 6e-21
Identities = 28/164 (17%), Positives = 60/164 (36%), Gaps = 16/164 (9%)
Query: 299 FAGGLEEYVQWLNTDKKPLHDVVGFRK--------DVDGITIDLALQWCSDAYSDTMLGY 350
F +E Y++ L ++ + G K + ++A ++ + +
Sbjct: 2 FKNYVELYLKSLEKKRQLDNGEDGAAKSDIPTILYERINNRWEVAFAVSDISF--QQISF 59
Query: 351 ANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPN 410
NSI T GGTH+ + + + ++ + KK K S+ ++ + I+ + N
Sbjct: 60 VNSIATTMGGTHVNYITDQIVKKISEILKK-----KKKKSVKSFQIKNNMFIFINCLIEN 114
Query: 411 PEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILS 454
P F QTK +L + + + D+ +
Sbjct: 115 PAFTSQTKEQLTTRVKDFGSRCEIPLEYINKI-MKTDLATRMFE 157
>d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment
(residues 410-1202) {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 760
Score = 63.3 bits (153), Expect = 3e-11
Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 13/59 (22%)
Query: 480 RSSSLPG--KLADCS---STTPEESEIFIVEGDSA-----GGSAKQGRDRRFQVIINPL 528
R S + KL D + + + + + EGDSA G A GRD + PL
Sbjct: 1 RKSRITNYPKLEDANKAGTKEGYKCTLVLTEGDSALSLAVAGLAVVGRD--YYGCY-PL 56
>d1h7sa2 d.122.1.2 (A:29-231) DNA mismatch repair protein PMS2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 203
Score = 49.1 bits (116), Expect = 3e-07
Identities = 28/190 (14%), Positives = 67/190 (35%), Gaps = 18/190 (9%)
Query: 107 LHHLVYEILDNAVDEAQAGYASNIEVALLAD--NSVSVADNGRGIPIDLHPATNKSALET 164
L V E+++N++D AG A+NI++ L + + V+DNG G+ +
Sbjct: 7 LSTAVKELVENSLD---AG-ATNIDLKLKDYGVDLIEVSDNGCGVEEENFE--------G 54
Query: 165 VLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRGKPV 224
+ H + + G G LS + ALS+ + ++ + +
Sbjct: 55 LTLKHHTSKIQEFADLTQVETFGFRGEALSSLCALSD-VTISTCHASAKVGTRLMFDHNG 113
Query: 225 TTLTCHVLPVDSKDRQGTRIRFWPD---KQVFTTAIQFDHNTIAGRIRELAFLNPKLTIA 281
+ P + F + F I+ ++ + + ++ + ++
Sbjct: 114 KIIQKTPYPRPRGTTVSVQQLFSTLPVRHKEFQRNIKKEYAKMVQVLHAYCIISAGIRVS 173
Query: 282 LRKEDSDPEK 291
+ ++
Sbjct: 174 CTNQLGQGKR 183
>d2hkja3 d.122.1.2 (A:10-228) Topoisomerase VI-B subunit {Archaeon
Sulfolobus shibatae [TaxId: 2286]}
Length = 219
Score = 42.5 bits (99), Expect = 5e-05
Identities = 33/216 (15%), Positives = 69/216 (31%), Gaps = 24/216 (11%)
Query: 89 EAVRKRPAMYIGSTGPRGLHHLVYEILDNAVD-EAQAGYASNIEVALLADN------SVS 141
E ++ P + R L+ V E+++N++D G NI++ + + V+
Sbjct: 5 EFFKRNPELAGFPNPARALYQTVRELIENSLDATDVHGILPNIKITIDLIDDARQIYKVN 64
Query: 142 VADNGRGIPIDLHPATNK--SALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNAL 199
V DNG GIP P + G G + S + + +
Sbjct: 65 VVDNGIGIPPQEVPNAFGRVLYSSKYVNRQTRGMYGLGVKAAVLYSQMHQDKPIEIETSP 124
Query: 200 SESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQF 259
S + ++ ++ ++ ++ +++ GT +
Sbjct: 125 VNSKRIYTFKLKIDINKNEPIIVERGSVE------NTRGFHGTSVAISIPGDWPKAK--- 175
Query: 260 DHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYN 295
+ I I+ + P + DPE N
Sbjct: 176 --SRIYEYIKRTYIITPYAEFIFK----DPEGNVTY 205
>d2c2aa2 d.122.1.3 (A:321-481) Sensor histidine kinase TM0853
{Thermotoga maritima [TaxId: 2336]}
Length = 161
Score = 36.8 bits (85), Expect = 0.002
Identities = 24/148 (16%), Positives = 45/148 (30%), Gaps = 43/148 (29%)
Query: 104 PRGLHHLVYEILDNAVDEAQAGYASNIEVALLADNS----VSVADNGRGIPIDLHPATNK 159
P + ++ +L+N V ++ +L + + V DNG GIP
Sbjct: 47 PTRIRQVLLNLLNNGVKYSKKDAPDKYVKVILDEKDGGVLIIVEDNGIGIPDHAKD---- 102
Query: 160 SALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQKYS 219
+F S + G+GL++ + E +W
Sbjct: 103 ----------RIFEQFYRVDSSLTYEVPGTGLGLAITKEIVELHGGRIW----------- 141
Query: 220 RGKPVTTLTCHVLPVDSKDRQGTRIRFW 247
V+S+ +G+R W
Sbjct: 142 --------------VESEVGKGSRFFVW 155
>d1bxda_ d.122.1.3 (A:) Histidine kinase domain of the osmosensor
EnvZ {Escherichia coli [TaxId: 562]}
Length = 161
Score = 33.3 bits (76), Expect = 0.033
Identities = 23/147 (15%), Positives = 44/147 (29%), Gaps = 48/147 (32%)
Query: 104 PRGLHHLVYEILDNAVDEAQAGYASNIEVALLADNS---VSVADNGRGIPIDLHPATNKS 160
P + V ++ NA I+V+ + + V D+G GI +
Sbjct: 45 PLSIKRAVANMVVNAARYGNGW----IKVSSGTEPNRAWFQVEDDGPGIAPEQRK----- 95
Query: 161 ALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSR 220
H F S + + G+GL++V + ++ +
Sbjct: 96 ---------HLFQPFVRGDS--ARTISGTGLGLAIVQRIVDNHNGMLE------------ 132
Query: 221 GKPVTTLTCHVLPVDSKDRQGTRIRFW 247
+ + +R G IR W
Sbjct: 133 -------------LGTSERGGLSIRAW 146
>d1ysra1 d.122.1.3 (A:299-446) Sensor-type histidine kinase PrrB
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 148
Score = 32.9 bits (75), Expect = 0.042
Identities = 25/147 (17%), Positives = 49/147 (33%), Gaps = 48/147 (32%)
Query: 104 PRGLHHLVYEILDNAVDEAQAGYASNIEVALLADNS---VSVADNGRGIPIDLHPATNKS 160
P GL V + NAV A ++++ ++ + +++ DNG G+P +
Sbjct: 42 PAGLRLAVDNAIANAVKHGGAT---LVQLSAVSSRAGVEIAIDDNGSGVP--------EG 90
Query: 161 ALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSR 220
+ V F S G + S G+GL++V ++ T
Sbjct: 91 ERQVV---------FERFSRGSTASHSGSGLGLALVAQQAQLHGGTAS------------ 129
Query: 221 GKPVTTLTCHVLPVDSKDRQGTRIRFW 247
+++ G R+
Sbjct: 130 -------------LENSPLGGARLVLR 143
>d1jm6a2 d.122.1.4 (A:1177-1366) Pyruvate dehydrogenase kinase {Rat
(Rattus norvegicus), isozyme 2 [TaxId: 10116]}
Length = 190
Score = 30.4 bits (68), Expect = 0.36
Identities = 16/113 (14%), Positives = 41/113 (36%), Gaps = 17/113 (15%)
Query: 104 PRGLHHLVYEILDNAVDEAQAGY-----ASNIEVALLADN---SVSVADNGRGIPIDLHP 155
P L+H+++E+ NA+ + I++ + S+ ++D G G+P
Sbjct: 58 PSHLYHMLFELFKNAMRATVESHESSLTLPPIKIMVALGEEDLSIKMSDRGGGVP----- 112
Query: 156 ATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVW 208
+E + + +++ G GL + ++ + +
Sbjct: 113 ---LRKIERLFSYMYSTAP-TPQPGTGGTPLAGFGYGLPISRLYAKYFQGDLQ 161
>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation
inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 297
Score = 28.6 bits (62), Expect = 1.7
Identities = 14/217 (6%), Positives = 51/217 (23%), Gaps = 3/217 (1%)
Query: 167 TVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDG---MEYHQKYSRGKP 223
+ +GG ++ ++S + ++ + RD + + G+
Sbjct: 32 LHIDKQDHYGGEAASVTLSQLYEKFKQNPISKEERESKFGKDRDWNVDLIPKFLMANGEL 91
Query: 224 VTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALR 283
L + +Q + + +++ + + K +
Sbjct: 92 TNILIHTDVTRYVDFKQVSGSYVFKQGKIYKVPANEIEAISSPLMGIFEKRRMKKFLEWI 151
Query: 284 KEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITIDLALQWCSDAY 343
+ + + + + V + + +G + L
Sbjct: 152 SSYKEDDLSTHQGLDLDKNTMDEVYYKFGLGNSTKEFIGHAMALWTNDDYLQQPARPSFE 211
Query: 344 SDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKK 380
+ + + + L + L
Sbjct: 212 RILLYCQSVARYGKSPYLYPMYGLGELPQGFARLSAI 248
>d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB
{Escherichia coli [TaxId: 562]}
Length = 450
Score = 28.7 bits (63), Expect = 2.0
Identities = 13/83 (15%), Positives = 24/83 (28%), Gaps = 9/83 (10%)
Query: 152 DLHPATNK---SALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVW 208
+ +P + + V + HA G + G + G L + W
Sbjct: 86 EEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWR------W 139
Query: 209 RDGMEYHQKYSRGKPVTTLTCHV 231
R ME K + + +
Sbjct: 140 RKRMEAAGKPTDKPNLVCGPVQI 162
>d1d5ta1 c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide
dissociation inhibitor, GDI {Cow (Bos taurus) [TaxId:
9913]}
Length = 336
Score = 27.5 bits (59), Expect = 4.2
Identities = 9/96 (9%), Positives = 23/96 (23%)
Query: 167 TVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRGKPVTT 226
+ +GG SS + L+ + W + + G+ V
Sbjct: 33 LHMDRNPYYGGESSSITPLEELYKRFQLLEGPPETMGRGRDWNVDLIPKFLMANGQLVKM 92
Query: 227 LTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHN 262
L + + + +++
Sbjct: 93 LLYTEVTRYLDFKVVEGSFVYKGGKIYKVPSTETEA 128
>d1gg3a2 b.55.1.5 (A:188-279) Erythroid membrane protein 4.1R {Human
(Homo sapiens) [TaxId: 9606]}
Length = 92
Score = 25.6 bits (56), Expect = 5.6
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 151 IDLHPATNKSALETVLTVLHAG 172
+DLH A + ++ +L V +G
Sbjct: 2 VDLHKAKDLEGVDIILGVCSSG 23
>d2j01y1 b.34.5.1 (Y:2-102) Ribosomal proteins L24 (L24p) {Thermus
thermophilus [TaxId: 274]}
Length = 101
Score = 25.1 bits (55), Expect = 8.9
Identities = 7/43 (16%), Positives = 13/43 (30%), Gaps = 8/43 (18%)
Query: 212 MEYHQKYSRGKPVTTL--------TCHVLPVDSKDRQGTRIRF 246
++ + S P V P+ + TR+R
Sbjct: 44 VKKAVRVSPKYPQGGFIEKEAPLHASKVRPICPACGKPTRVRK 86
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.133 0.379
Gapped
Lambda K H
0.267 0.0678 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,899,858
Number of extensions: 87051
Number of successful extensions: 247
Number of sequences better than 10.0: 1
Number of HSP's gapped: 224
Number of HSP's successfully gapped: 21
Length of query: 538
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 448
Effective length of database: 1,171,896
Effective search space: 525009408
Effective search space used: 525009408
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.1 bits)