Query 009296
Match_columns 538
No_of_seqs 124 out of 752
Neff 6.3
Searched_HMMs 46136
Date Thu Mar 28 22:49:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009296.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009296hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2262 Sexual differentiation 100.0 6E-164 1E-168 1305.3 33.7 520 17-538 45-564 (761)
2 TIGR00727 ISP4_OPT small oligo 100.0 7E-156 2E-160 1293.2 43.6 512 20-538 1-515 (681)
3 TIGR00728 OPT_sfam oligopeptid 100.0 2E-107 4E-112 916.3 41.2 486 26-538 1-499 (654)
4 PF03169 OPT: OPT oligopeptide 100.0 2E-101 4E-106 863.7 31.8 469 42-538 1-479 (624)
5 TIGR00733 putative oligopeptid 100.0 1.2E-40 2.6E-45 368.3 30.9 407 43-538 2-439 (591)
6 COG1297 Predicted membrane pro 99.9 6.8E-25 1.5E-29 235.0 24.1 418 39-538 11-463 (624)
7 PF03169 OPT: OPT oligopeptide 87.9 23 0.0005 40.5 17.5 214 43-301 354-589 (624)
8 COG0628 yhhT Predicted permeas 64.7 46 0.00099 35.1 10.0 148 375-537 165-315 (355)
9 PF13829 DUF4191: Domain of un 51.5 33 0.00072 34.3 5.8 58 385-460 10-67 (224)
10 PRK10983 putative inner membra 45.9 1.7E+02 0.0038 31.3 10.7 47 490-537 273-319 (368)
11 TIGR02872 spore_ytvI sporulati 45.2 2E+02 0.0044 29.5 10.9 103 422-537 211-314 (341)
12 PRK12287 tqsA pheromone autoin 43.7 2.7E+02 0.0058 29.4 11.6 143 378-537 158-303 (344)
13 PF01594 UPF0118: Domain of un 36.9 2.4E+02 0.0052 28.9 9.9 151 373-537 149-301 (327)
14 TIGR02106 cyd_oper_ybgT cyd op 36.7 35 0.00075 23.4 2.3 18 47-64 5-22 (30)
15 PRK14749 hypothetical protein; 35.0 39 0.00084 23.1 2.3 18 47-64 5-22 (30)
16 PF08173 YbgT_YccB: Membrane b 34.5 40 0.00087 22.8 2.3 18 47-64 5-22 (28)
17 PF03606 DcuC: C4-dicarboxylat 33.4 1.7E+02 0.0036 32.5 8.4 19 415-433 251-269 (465)
18 PF11292 DUF3093: Protein of u 31.2 88 0.0019 29.2 4.8 30 415-447 9-38 (143)
19 COG5336 Uncharacterized protei 23.4 1.5E+02 0.0033 26.5 4.6 38 420-461 52-89 (116)
20 PF06645 SPC12: Microsomal sig 21.6 91 0.002 25.8 2.8 45 418-463 11-55 (76)
No 1
>KOG2262 consensus Sexual differentiation process protein ISP4 [Signal transduction mechanisms]
Probab=100.00 E-value=5.7e-164 Score=1305.28 Aligned_cols=520 Identities=62% Similarity=1.152 Sum_probs=509.8
Q ss_pred cccccCChhhhhhcccCCCCCCCCCccchhhhhHHHHHHHHHHHhhhhhcccccccchhHHHHHHHHHhhhhhhccccCc
Q 009296 17 VVVDEECVIKQVDLTVPKTDDPTMPCVTFRMWVLGVVSCVVLSFVNQFFWYRTQPLAVTSISAQIAVVPLGHLMARTLPH 96 (538)
Q Consensus 17 ~~~~~~spy~evr~~v~~~DDp~~p~~TfRa~~lG~~~~~~~~~~N~~f~~r~~~i~i~~~~~qll~~plG~~~a~~lP~ 96 (538)
++|+|||||||||++||++|||++|++|||+|++|++.+.+++++||||++|+++++++.+++|+++||+||+|||++|+
T Consensus 45 ~ed~~~spv~EVrl~Vp~tDDptlPv~TfRmW~Lg~~~~iv~a~vNqFF~~R~~~lsis~i~aQi~~~PlGklma~~lP~ 124 (761)
T KOG2262|consen 45 LEDEEDSPVPEVRLTVPPTDDPTLPVLTFRMWFLGLISCIVLAFVNQFFSYRYPPLSISAIVAQIATYPLGKLMAKTLPT 124 (761)
T ss_pred ccccccCcchhheeecCCCCCCCchhHhHHHHHHHHHHHHHHHHHhhhhcccCCCeehHHHHHHHHHHhHHHHHHHhCCc
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeecCccceeecCCCCCCchhHHHHHHHhhcccchhhHhhHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhhhhccce
Q 009296 97 RIFFKDTMFEFDLNSGPFNIKEHVLITIFANSGAGTVYATHILSAVKLLYKRKLGFLPAFLVMLTTQVLGFGWAGLFRKY 176 (538)
Q Consensus 97 ~~~~~~~~~~~~lNPGpF~~KEh~li~imAs~a~~~~~a~~vi~~~~~fy~~~~~~~~~il~~lstq~~G~g~AGllR~~ 176 (538)
|++.-+++|+|+|||||||.|||++|+|+||+++|.+|+++++.+|++||+++.+++++++++++||++|||+||++||+
T Consensus 125 ~~~~~~~~~~fslNPGPFn~KEHvlitIfan~~sg~aYat~Ii~~~k~fY~~~l~f~~~~ll~lttQ~lGyGwAGl~Rk~ 204 (761)
T KOG2262|consen 125 WKFGLGGRWSFSLNPGPFNVKEHVLITIFANIGSGTAYATHIITAQKAFYKRNLSFGYAFLLVLTTQLLGYGWAGLFRKY 204 (761)
T ss_pred eeeecCcceEEEeCCCCCcchheeeeehhhhccCcchhhhHHHHHHHHHHhccccHHHHHHHHHHHHHhcccHhhhhHhh
Confidence 99822789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccCCCcCCchhHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHhhhhhHHHhhhhhhhhhhhcCCCcceeecc
Q 009296 177 LVEPGEMWWPSNLVQVSLFRALHEKEKRPKGGMTRNQFFLIVLLTSFAYYVLPGYLFALLTTISWVCWISPKSVLVHQLG 256 (538)
Q Consensus 177 lV~p~~~iwP~~L~t~al~~~LH~~~~~~~~~~sr~kfF~~~f~~~f~~~~~P~y~fp~L~~~~~~cwi~p~n~~~~~if 256 (538)
+|+|++|.||++|++++|||+||+++++.+++|+|+|||.++|++||+|||+|+|+||.|+++||+||+.|+|.+++|||
T Consensus 205 lV~Pa~m~WPsnLvqvsLFraLHeke~~~~g~msR~rFF~ivfv~SFiyY~fPgylF~~Ls~~swvcW~~P~s~~~~qi~ 284 (761)
T KOG2262|consen 205 LVYPASMWWPSNLVQVSLFRALHEKENKSKGNMSRYRFFLIVFVASFIYYWFPGYLFPILSSFSWVCWIWPSSITANQIG 284 (761)
T ss_pred ccCcHhhcCcchhHHHHHHHHHHhhhhhcccCccchhhhhHHHHHHHHHHHhhHHHHHHHhhhheeeEeccccHHHHHhc
Confidence 99999999999999999999999999888778999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccceecccccccccCCcccccHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCcccccccCCceeece
Q 009296 257 SGMNGLGIGSIGIDWSTISSYLGSPLASPWFATANVAVGFFLVMYVMVPLCYWLNFYKAKNFPIYSKDLFKSNGEDYDIL 336 (538)
Q Consensus 257 G~~~GlGl~~~tfDW~~i~~~~g~pl~~P~~a~~n~~~G~vl~~~il~p~lyy~n~~~~~~~P~~S~~~fd~~G~~Yn~s 336 (538)
||.+|||++|+||||++|++|.||||.+|||+.+|+++|++++.||+.|++||+|.|+++|+|+.|+++||++|++||++
T Consensus 285 sg~~GLGi~~~tlDW~~IssylgSPLasP~~a~~n~~~gfvl~~~IV~Pi~Y~~n~~~a~~fPI~Ss~lf~~tG~sYnvt 364 (761)
T KOG2262|consen 285 SGLTGLGIGPFTLDWSQISSYLGSPLASPFFAIANVFLGFVLFIYIVLPILYWTNTYDAKYFPIFSSSLFDHTGNSYNVT 364 (761)
T ss_pred ccccccccccccccHHHHHHHcCCcchhhHHHHHHHhhhhhhhhhhhhhhHhhccceecceeceecCcceecCCcEecee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCcccCHHHHhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHhhcCCCCCCcchhhhhcCCCCC
Q 009296 337 SIVNANFRLDRAAYAKNGPVNLSTLFAMTYGLGFATLSATLVHIFLFSGRDLWEQTRRAFGGHKKVDIHTKLMQKYKSVP 416 (538)
Q Consensus 337 ~il~~~~~ld~~~y~~ysp~~~s~~~~~~~~~~fa~~~a~i~~~~l~~~~~i~~~~~~~~~~~~~~D~h~~lm~~Y~evP 416 (538)
+|+|+|+++|.+||++|||+|+|+.|+++|+++||+++|+++|++|+|+||||+++|.. .++++|+|.|+||||||||
T Consensus 365 ~Il~~~f~ld~~~Y~~ysp~yls~~falsygl~faa~~a~i~Hv~Lf~gkdiw~~~~~~--~~k~~DiHtrlMkkYKeVP 442 (761)
T KOG2262|consen 365 KILDSKFELDLDKYQEYSPLYLSTFFALSYGLGFAALSATIVHVALFNGKDIWQQTKKA--FNKKMDIHTRLMKKYKEVP 442 (761)
T ss_pred eeecCccccchHHHhhcCCcceeHHHHHHHHHHHHHHHHHhhhheeeccHHHHHHHHhc--cccCCCHHHHHHHHhccCc
Confidence 99999999999999999999999999999999999999999999999999999999988 5778899999999999999
Q ss_pred chHHHHHHHHHHHHHHhhhhhccCCcCCchHHHHHHHHHHHHHhhcceeeEeeccCCCchhhHHhhhhhhccCCCcchhh
Q 009296 417 MWWFWVILVVNIALIIFACQYYNESLQLPWWGVLLACGIAVFFTLPIGIINATTNQQPGLNIITEYVIGYLYPERPVANM 496 (538)
Q Consensus 417 ~Wwy~~~~v~s~~~~i~~~~~~~~~~~lP~w~~~lai~l~~v~~ip~g~i~a~T~~~~~l~~isqli~G~~~pG~p~anm 496 (538)
+|||+++++++++++++.|++|+++.|+|||++++|+++++++++|+|+++|+||+++++|+++|+|.||++||||+|||
T Consensus 443 ~WWf~~ili~s~~l~~~~~~~~~~~~q~PwWg~~va~~ia~vf~iPigii~AtTNq~~GLNiitE~i~Gy~~PgrPiAn~ 522 (761)
T KOG2262|consen 443 DWWFLAILIVSLGLGLAACEGYKTQVQLPWWGLLVACAIAFVFTIPIGIIQATTNQTPGLNIITEYIIGYIYPGRPIANL 522 (761)
T ss_pred HHHHHHHHHHHHHHHhhheeeecccccCchHHHHHHHHHHHHHhccHHHhhhhccCCccHHHHHHHHHHhhcCCchHHHH
Confidence 99999999999999999999996556999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhHhHHHHHHHhhhhhhhhhcCCChHHHHHHhhhhcC
Q 009296 497 CFKVYGYISMNQGLTFLADFKLGHYMKIPPRAMFMVRLWEHL 538 (538)
Q Consensus 497 ~f~~~~~~~~~qa~~~~~DlKlGhY~kiPPR~~F~~Qi~g~~ 538 (538)
.||+|||+++.||++|++|+|+|||||||||.||.+|++|++
T Consensus 523 ~FK~yGyism~Qal~f~~DlKlghYMKIPPR~mF~~Q~v~ti 564 (761)
T KOG2262|consen 523 CFKTYGYISMTQALTFLQDLKLGHYMKIPPRSMFAVQLVGTI 564 (761)
T ss_pred HHHHhchhhHHHHHHHHhhccceeeecCChHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999975
No 2
>TIGR00727 ISP4_OPT small oligopeptide transporter, OPT family. This model represents a family of transporters of small oligopeptides, demonstrated experimentally in three different species of yeast. A set of related proteins from the plant Arabidopsis thaliana forms an outgroup to the yeast set by neighbor joining analysis but is remarkably well conserved and is predicted here to have equivalent function.
Probab=100.00 E-value=7.4e-156 Score=1293.24 Aligned_cols=512 Identities=34% Similarity=0.689 Sum_probs=498.4
Q ss_pred ccCChhhhhhcccCCCCCCCCCccchhhhhHHHHHHHHHHHhhhhhcccccccchhHHHHHHHHHhhhhhhccccCceee
Q 009296 20 DEECVIKQVDLTVPKTDDPTMPCVTFRMWVLGVVSCVVLSFVNQFFWYRTQPLAVTSISAQIAVVPLGHLMARTLPHRIF 99 (538)
Q Consensus 20 ~~~spy~evr~~v~~~DDp~~p~~TfRa~~lG~~~~~~~~~~N~~f~~r~~~i~i~~~~~qll~~plG~~~a~~lP~~~~ 99 (538)
||||||||||++||++|||++|++|||+|++|++++++++++||+|++|+|+++++++++||++||+||+|+|++|++++
T Consensus 1 ~~~spypeVr~~v~~~DDp~~p~~TfRa~~lG~~l~~i~s~in~~f~lR~p~i~is~~~~qll~yp~Gk~~a~~lP~~~~ 80 (681)
T TIGR00727 1 EFDSPYPEVRAAVPPTDDPTIPVNTIRAWFIGLIWSTVGSGFNMFFSHRVPSISLNTPIIQMLAYPCGKAWAKIIPDWTI 80 (681)
T ss_pred CCCCcchhhhhcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHHhccCCCCceeHHHHHHHHHHHHHHHHHHHHcCcccc
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred ecCccceeecCCCCCCchhHHHHHHHhhcccchhhHhhHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhhhhccceeec
Q 009296 100 FKDTMFEFDLNSGPFNIKEHVLITIFANSGAGTVYATHILSAVKLLYKRKLGFLPAFLVMLTTQVLGFGWAGLFRKYLVE 179 (538)
Q Consensus 100 ~~~~~~~~~lNPGpF~~KEh~li~imAs~a~~~~~a~~vi~~~~~fy~~~~~~~~~il~~lstq~~G~g~AGllR~~lV~ 179 (538)
+.+|++|+|||||||+|||++||||||++++.+|+++++.+|++||+++.++++++++++|+|++|||+||++||++||
T Consensus 81 -~~~g~~~~lNPGPF~~KEh~liti~a~~~~~~~y~~~~i~~~~~fy~~~~~~g~~il~~lstq~~G~g~Ag~lRr~lV~ 159 (681)
T TIGR00727 81 -TIRGRKYNIIPGPFNVKEHMFITLMYAVSFGAAYTTDIILAQKLFYKSAFGFGYQFLLSLSTQFIGFGFAGILRRFVVY 159 (681)
T ss_pred -ccccceeccCCCCCChhcceeeeeeeehhccHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHhhceEec
Confidence 6677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcCCchhHHHHHHHHhhcCCCCC--CCCcchHHHHHHHHHHHHHHHhhhhhHHHhhhhhhhhhhhcCCCcceeeccc
Q 009296 180 PGEMWWPSNLVQVSLFRALHEKEKRP--KGGMTRNQFFLIVLLTSFAYYVLPGYLFALLTTISWVCWISPKSVLVHQLGS 257 (538)
Q Consensus 180 p~~~iwP~~L~t~al~~~LH~~~~~~--~~~~sr~kfF~~~f~~~f~~~~~P~y~fp~L~~~~~~cwi~p~n~~~~~ifG 257 (538)
|++|+||++|++++|+|+||+++++. .|++||+|+|+++|+++|+|+|+|+|+||+|+.|||+|||+|||+++|++||
T Consensus 160 p~~~iwPs~L~t~aL~~aLH~~~~~~~~gw~~sr~kfF~~~f~~sfvw~w~P~ylf~~Ls~f~w~cwi~P~n~~~~~i~g 239 (681)
T TIGR00727 160 PARALWPTNLVTITINKALHGKENHEANGWKISRYKFFFLVFFASFIWNWFPTYIFQALSTFNWMTWIKPNNINLNQIFG 239 (681)
T ss_pred cccCcCCCccHHHHHHHHHhccCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhccCcchhhhhhhc
Confidence 99999999999999999999865432 4679999999999999999999999999999999999999999999999999
Q ss_pred ccccccccc-ceecccccccccCCcccccHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCcccccccCCceeece
Q 009296 258 GMNGLGIGS-IGIDWSTISSYLGSPLASPWFATANVAVGFFLVMYVMVPLCYWLNFYKAKNFPIYSKDLFKSNGEDYDIL 336 (538)
Q Consensus 258 ~~~GlGl~~-~tfDW~~i~~~~g~pl~~P~~a~~n~~~G~vl~~~il~p~lyy~n~~~~~~~P~~S~~~fd~~G~~Yn~s 336 (538)
|.+|||++| +|||||+|+++.|+||++|+|+++|+++|+++++|++.|++||+|.|+++|+|++|+++|||+|++||+|
T Consensus 240 ~~~GlGl~p~~tfDW~~I~~~~~spL~~P~~a~~n~~~G~~l~~~ii~P~lyy~N~w~~~~lPi~s~~~fd~~G~~Y~vs 319 (681)
T TIGR00727 240 GSTGLGINPISSFDWNQISGYINSPLVYPAWSYLTIYLGCILAFWIVIPAVYYSNTWYCQYLPISSNGLYDNFGHSYNVT 319 (681)
T ss_pred cccCCCcCCcCcccHHHHHhhcCCcccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccCCccchhhhcCCCccccc
Confidence 999999999 8999999987789999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCcccCHHHHhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHhhcCCCCCCcchhhhhcCCCCC
Q 009296 337 SIVNANFRLDRAAYAKNGPVNLSTLFAMTYGLGFATLSATLVHIFLFSGRDLWEQTRRAFGGHKKVDIHTKLMQKYKSVP 416 (538)
Q Consensus 337 ~il~~~~~ld~~~y~~ysp~~~s~~~~~~~~~~fa~~~a~i~~~~l~~~~~i~~~~~~~~~~~~~~D~h~~lm~~Y~evP 416 (538)
||+|+|+++|++|||||||+|++++++++|+.+||+++|+++|++|+|||||++++|. ++++|+|.|+||||||||
T Consensus 320 ~il~~~~~ld~~~y~~ysp~~l~~~~al~yg~~fA~~~a~i~h~~l~~~~~i~~~~~~----~~~~D~h~rlM~~Y~evP 395 (681)
T TIGR00727 320 EILDKDNKFDVKKYQSYSPPFYSTTNAVSYGLSFASIPLMITHSIIVHGKLLFNALKD----DDYPDPHSNLMKAYKEVP 395 (681)
T ss_pred eeeCCCCcCCHHHHHHhCCccccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhc----CCCCChhHHHhhcCCCCc
Confidence 9999999999999999999999999999999999999999999999999999999863 456899999999999999
Q ss_pred chHHHHHHHHHHHHHHhhhhhccCCcCCchHHHHHHHHHHHHHhhcceeeEeeccCCCchhhHHhhhhhhccCCCcchhh
Q 009296 417 MWWFWVILVVNIALIIFACQYYNESLQLPWWGVLLACGIAVFFTLPIGIINATTNQQPGLNIITEYVIGYLYPERPVANM 496 (538)
Q Consensus 417 ~Wwy~~~~v~s~~~~i~~~~~~~~~~~lP~w~~~lai~l~~v~~ip~g~i~a~T~~~~~l~~isqli~G~~~pG~p~anm 496 (538)
+|||++++++++++++++++.| ++++|||++++|+++++++++|+|+++|+||+++++|+++|+|+||+.||||+|||
T Consensus 396 ~WWy~~~l~is~~~~~~~v~~~--~t~lP~W~~~lal~l~~i~~iP~~~i~a~t~~~~~ln~l~eli~Gy~~PG~p~a~~ 473 (681)
T TIGR00727 396 DWWYLAVFLGFFGMGIATVEHW--PTETPVWGLFVCLIFNFVFLIPTTILQATTNISFGLNVLTEFIVGYALPGRPLAMM 473 (681)
T ss_pred HHHHHHHHHHHHHHHHHHHhhC--CCCCCHHHHHHHHHHHHHHHHhhhheEeecCCccchhHHHHHHhhhccCCCchHHH
Confidence 9999999999999999999999 89999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhHhHHHHHHHhhhhhhhhhcCCChHHHHHHhhhhcC
Q 009296 497 CFKVYGYISMNQGLTFLADFKLGHYMKIPPRAMFMVRLWEHL 538 (538)
Q Consensus 497 ~f~~~~~~~~~qa~~~~~DlKlGhY~kiPPR~~F~~Qi~g~~ 538 (538)
+||+||+++.+||+++++|||+|||||+|||+||++|++|++
T Consensus 474 ~fk~~g~~~~~qa~~~~~DlKlGhY~kiPPR~~F~~Q~~gtl 515 (681)
T TIGR00727 474 IFKTFGYITDGQADNFVSDLKIGHYMKIPPRALFRGQCVATI 515 (681)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHhcCCCcHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999974
No 3
>TIGR00728 OPT_sfam oligopeptide transporters, OPT superfamily. Homology between the two branches of the superfamily is seen most easily at the ends of the protein. The central regions are poorly conserved within each branch and may not be homologous between branches.
Probab=100.00 E-value=1.7e-107 Score=916.27 Aligned_cols=486 Identities=40% Similarity=0.690 Sum_probs=454.2
Q ss_pred hhhhcccCCCCCCCCCccchhhhhHHHHHHHHHHHhhhhhcccccccchhHHHHHHHHHhhhhhhccccCceeeecCccc
Q 009296 26 KQVDLTVPKTDDPTMPCVTFRMWVLGVVSCVVLSFVNQFFWYRTQPLAVTSISAQIAVVPLGHLMARTLPHRIFFKDTMF 105 (538)
Q Consensus 26 ~evr~~v~~~DDp~~p~~TfRa~~lG~~~~~~~~~~N~~f~~r~~~i~i~~~~~qll~~plG~~~a~~lP~~~~~~~~~~ 105 (538)
||||+ ||++|||++|++|+|+|++|++++++++++||||++|+|+++++++++|+++||+||+|+|++|+|+ ++
T Consensus 1 ~~vra-v~~~ddp~~~~~T~Ra~~lG~i~~~v~~~~n~~~~lr~g~~~~~si~~~ll~~~~g~~~~~~lP~~~-----~~ 74 (654)
T TIGR00728 1 QEVRA-VPPTDDPSLPVITFRAWFLGILIGVVFAGVNQFFGLRTGSVSISSIVAALLAYPLGKLWALIIPDWE-----GW 74 (654)
T ss_pred Ccccc-CCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHhccCCCceeeHHHHHHHHHHHHHHHHHHhcCCcc-----cc
Confidence 59999 9999999999999999999999999999999999999999999999999999999999999999985 57
Q ss_pred eeecCCCCCCchhHHHHHHHhhcccchhhHhhHHHHHHHHhcCCCChHHHHHHHHHHHH--hhhhhhhhccceeeccCCC
Q 009296 106 EFDLNSGPFNIKEHVLITIFANSGAGTVYATHILSAVKLLYKRKLGFLPAFLVMLTTQV--LGFGWAGLFRKYLVEPGEM 183 (538)
Q Consensus 106 ~~~lNPGpF~~KEh~li~imAs~a~~~~~a~~vi~~~~~fy~~~~~~~~~il~~lstq~--~G~g~AGllR~~lV~p~~~ 183 (538)
||+|||||||+|||+++|+|||++++.+++++++.+|++||+++.++++++++++++|+ +|+++||++||++|+|++|
T Consensus 75 ~~~lnpgpft~kE~~~iq~~asa~~~~~~~~~~i~a~~~~~~~~~~~~~~~l~~~~~~~~~lG~~~a~~lRr~lV~~~~l 154 (654)
T TIGR00728 75 KFSLNPGPFNVKENNLIQTAASACGGLAYAIFILPAQKMFYTSNFSWGYQILLVWSTQLGFLGFGFAGLLRRALVVPAKL 154 (654)
T ss_pred ceecCCCCCChhhheeEEeeeeccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHhHHhhHHHhhhheeCcccc
Confidence 89999999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred cCCchhHHHHHHHHhhcCCCCCC-CCcchHHHHHHHHHHHHHHHhhhhhHHHhhhhhhhhhhhcCCCcceeecccccccc
Q 009296 184 WWPSNLVQVSLFRALHEKEKRPK-GGMTRNQFFLIVLLTSFAYYVLPGYLFALLTTISWVCWISPKSVLVHQLGSGMNGL 262 (538)
Q Consensus 184 iwP~~L~t~al~~~LH~~~~~~~-~~~sr~kfF~~~f~~~f~~~~~P~y~fp~L~~~~~~cwi~p~n~~~~~ifG~~~Gl 262 (538)
+||+++|+++++|+||++.+..+ ++++| +.+.+ |.++|+.++.++|+||+.|+++.++ +|| |+
T Consensus 155 ~~P~~la~a~l~~al~~~~~~~~g~~~~r---~l~~~---------~~~~f~~~~~~~~~~~~~p~~~~~~-~fg---gl 218 (654)
T TIGR00728 155 PWPSGLATAELFKALHGKFHTANGDTIAK---NLLRV---------LLKYFSSSFLWSFVSWFFPGFTAFQ-TFG---GL 218 (654)
T ss_pred cCCcccHHHHHHHHhhhccCccCCCccch---hHHHh---------HHHHHHHHHHHHHHHHHhcCCcccc-ccc---cc
Confidence 99999999999999987644332 34455 22221 7888999999999999999988875 555 79
Q ss_pred ccccceecccccccccCCcccccHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCcccccccCCceeec-eeeecC
Q 009296 263 GIGSIGIDWSTISSYLGSPLASPWFATANVAVGFFLVMYVMVPLCYWLNFYKAKNFPIYSKDLFKSNGEDYDI-LSIVNA 341 (538)
Q Consensus 263 Gl~~~tfDW~~i~~~~g~pl~~P~~a~~n~~~G~vl~~~il~p~lyy~n~~~~~~~P~~S~~~fd~~G~~Yn~-s~il~~ 341 (538)
|+++++|||+++++++|+|+++|+++++|+++|.+++|+++.|++||+|+|.++++|++|++.||++|.+||. ++++++
T Consensus 219 g~~~~~f~w~~s~~~~g~gli~p~~~~~~~~~G~vl~~~ii~P~l~~~n~~~~~~~p~~s~~~~~~~~~~y~~~~~il~~ 298 (654)
T TIGR00728 219 GSGSIGFGWQQSSAYIGSGLITPFTVGLNMLLGVILAFGIVLPILYYKNTWPADADPIDSSSTIDSTGVRYNSVGLIVVD 298 (654)
T ss_pred cccccceecHHhHhhcCCCccCCHHHHHHHHHHHHHHHHHHHHHHHhcCccccccCCCcchhhhcCCCceeeeeeEEEeC
Confidence 9999999999997788999999999999999999999999999999999999999999999999999999998 999998
Q ss_pred C-cccCHHHHhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHhhcCCCCCCcchhhhhcC--------
Q 009296 342 N-FRLDRAAYAKNGPVNLSTLFAMTYGLGFATLSATLVHIFLFSGRDLWEQTRRAFGGHKKVDIHTKLMQKY-------- 412 (538)
Q Consensus 342 ~-~~ld~~~y~~ysp~~~s~~~~~~~~~~fa~~~a~i~~~~l~~~~~i~~~~~~~~~~~~~~D~h~~lm~~Y-------- 412 (538)
+ .++|+++|++|||+|+++++ |+.+|+.++++++|++++|+|++++++|+. .++.+|.|.|+||+|
T Consensus 299 ~~~~l~~~~~~~~s~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~d~~~~~~ 373 (654)
T TIGR00728 299 GLWTLVKPLYPIYSPLVLSIDF---YALLFNAFSDTIYSFALAHGRDIISARRDH--YKLGRDDHVRLLSRDEDLKVKNY 373 (654)
T ss_pred CCceecHHHHHHhCcceeeHHH---HHHHHHHHHHHHHHHHHHhhHHHHHHHHHh--hhccCCCChHHHhhccccccccc
Confidence 8 79999999999999999999 999999999999999999999999998876 344567777776666
Q ss_pred CCCCchHHHHHHHHHHHHHHhhhhhccCCcCCchHHHHHHHHHHHHHhhcceeeEeeccCCCchhhHHhhhhhhccCCCc
Q 009296 413 KSVPMWWFWVILVVNIALIIFACQYYNESLQLPWWGVLLACGIAVFFTLPIGIINATTNQQPGLNIITEYVIGYLYPERP 492 (538)
Q Consensus 413 ~evP~Wwy~~~~v~s~~~~i~~~~~~~~~~~lP~w~~~lai~l~~v~~ip~g~i~a~T~~~~~l~~isqli~G~~~pG~p 492 (538)
||||+|||++++++++++++++++.+++.+++|||++++|+++++++++|.++++|+||...++|+++|+++|++.||||
T Consensus 374 ~~vP~ww~~~~~~~~~~~~~~~~~~~~~~~~~p~w~~ilal~l~~i~~~~~~~~~g~tnp~~~l~~~~~li~g~~~pg~~ 453 (654)
T TIGR00728 374 KEVPAWWYLSLLLVSFGLGIVVVEYYFGITQLPWWGVIVALIIAFVLAIPIGILAGITNPVSGLNIITELIIGYILPGRP 453 (654)
T ss_pred CcCcHHHHHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHHhhhheEEeecccchhhHHHHHhheeecCCcc
Confidence 99999999999999999999999998655899999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHhhHhHHHHHHHhhhhhhhhhcCCChHHHHHHhhhhcC
Q 009296 493 VANMCFKVYGYISMNQGLTFLADFKLGHYMKIPPRAMFMVRLWEHL 538 (538)
Q Consensus 493 ~anm~f~~~~~~~~~qa~~~~~DlKlGhY~kiPPR~~F~~Qi~g~~ 538 (538)
++||+++++++++++||.|++||||+|||+|+|||+||.+|++|++
T Consensus 454 ~a~l~~~~~~~~~~~qA~~~~qDlK~G~y~~~pPR~~f~~Qiig~~ 499 (654)
T TIGR00728 454 LANLAFKAYGFITAQQAGDFMQDLKTGHYMKAPPRAQFAAQLIGTI 499 (654)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999974
No 4
>PF03169 OPT: OPT oligopeptide transporter protein; InterPro: IPR004813 The transporter OPT family are transporters of small oligopeptides, demonstrated experimentally in three different species of yeast. OPT1 is not a member of the ABC or PTR membrane transport families [].; GO: 0055085 transmembrane transport
Probab=100.00 E-value=2.1e-101 Score=863.69 Aligned_cols=469 Identities=36% Similarity=0.699 Sum_probs=443.8
Q ss_pred ccchhhhhHHHHHHHHHHHhhhhhcccccccchhHHHHHHHHHhhhhhhccccCceeeecCccceeecCCCCCCchhHHH
Q 009296 42 CVTFRMWVLGVVSCVVLSFVNQFFWYRTQPLAVTSISAQIAVVPLGHLMARTLPHRIFFKDTMFEFDLNSGPFNIKEHVL 121 (538)
Q Consensus 42 ~~TfRa~~lG~~~~~~~~~~N~~f~~r~~~i~i~~~~~qll~~plG~~~a~~lP~~~~~~~~~~~~~lNPGpF~~KEh~l 121 (538)
|+|+|++++|++++++++++||||++|++++..+++++|+++|++||.++|. ++++++||||||+|||++
T Consensus 1 ~lT~Ra~~lG~~~~~l~a~~n~y~~lk~g~~~~~si~~~il~~~~~~~~~~~----------~~~~~ln~gp~~~kE~~~ 70 (624)
T PF03169_consen 1 QLTFRAVLLGILLGILGAAINQYFGLKTGWISIASIFAAILSFPIGRLLARI----------GWRFSLNPGPFTIKENNL 70 (624)
T ss_pred CeeHHHHHHHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHhh----------ccccccCCCCCCHHHHHH
Confidence 6899999999999999999999999999999999999999999999999982 245679999999999999
Q ss_pred HHHHhhcccchhhHhhHHHH--HHHHhcCCCChHHHHHHHHHHHHhhhhhhhhccceeeccCCCcCCchhHHHHHHHHhh
Q 009296 122 ITIFANSGAGTVYATHILSA--VKLLYKRKLGFLPAFLVMLTTQVLGFGWAGLFRKYLVEPGEMWWPSNLVQVSLFRALH 199 (538)
Q Consensus 122 i~imAs~a~~~~~a~~vi~~--~~~fy~~~~~~~~~il~~lstq~~G~g~AGllR~~lV~p~~~iwP~~L~t~al~~~LH 199 (538)
+|+|||++++++++++++++ ++.||+++.++++++++++++|++|+++||++||++|+|++|+||+++|+++++++||
T Consensus 71 vq~~asa~~~~~~a~~~i~~ipa~~~~~~~~~~~~~~l~~~~~~~lG~~~a~~lR~~lV~~~~l~fP~~~a~a~~i~alh 150 (624)
T PF03169_consen 71 VQTMASAAGGMAYAAGFIAAIPALLFLGQPFSFGYLILWTLSTQLLGYGFAGPLRRFLVYPEKLPFPSGLATAELINALH 150 (624)
T ss_pred HHHHHHHhhhhhhhhhHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhhheeccccEEecccccCcchhHHHHHHHHhc
Confidence 99999999999999999999 5679999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCcchHHHHHHHHHHHHHHHhhhhhHHHhhhhhhhhhhhcCCCcceeeccccccccccccceecccccccccC
Q 009296 200 EKEKRPKGGMTRNQFFLIVLLTSFAYYVLPGYLFALLTTISWVCWISPKSVLVHQLGSGMNGLGIGSIGIDWSTISSYLG 279 (538)
Q Consensus 200 ~~~~~~~~~~sr~kfF~~~f~~~f~~~~~P~y~fp~L~~~~~~cwi~p~n~~~~~ifG~~~GlGl~~~tfDW~~i~~~~g 279 (538)
+++ +.+.+++|+|+|.++|+++++|+|+|+|+||+|+.++|+||++|+|++.++++|+.. ++||||++. +|
T Consensus 151 ~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~w~~~~~~~~~~~~~~~~------~~~dws~~~--~g 221 (624)
T PF03169_consen 151 SGG-GWREAKSRAKFFGIAFLGSFIYYWLPQYIFPALSSFSWPCWIAPNNPWLNNLFGGWS------FSFDWSPIL--IG 221 (624)
T ss_pred cCc-cchhhhhhHhHHHHHHHHHHHHHHHHHHHHhhhcccccceeeccccchHhhhcccce------eeEeecHHh--cC
Confidence 987 222346999999999999999999999999999999999999999999999998753 999999984 79
Q ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHHHHh-ccccccCCCCCcccccccCCceeeceeeecCCcccCHHHHhccCCcch
Q 009296 280 SPLASPWFATANVAVGFFLVMYVMVPLCYWL-NFYKAKNFPIYSKDLFKSNGEDYDILSIVNANFRLDRAAYAKNGPVNL 358 (538)
Q Consensus 280 ~pl~~P~~a~~n~~~G~vl~~~il~p~lyy~-n~~~~~~~P~~S~~~fd~~G~~Yn~s~il~~~~~ld~~~y~~ysp~~~ 358 (538)
+|+++|+++++|+++|.+++|+++.|++||+ |.|+++++|++|+++||++|+ +|+++|.++|++||+++.
T Consensus 222 ~g~i~p~~~~ls~~~G~v~~w~ii~P~l~~~~~~~~~~~~p~~s~~~~~~~~~---------~~~~~~~~~~~~~g~~~~ 292 (624)
T PF03169_consen 222 SGLIVPLWAQLSMFLGAVLAWGIIIPILYYSGNAWGGAYLPFNSNSLFDNNGS---------SDGTLNWTKYIGYGPMYG 292 (624)
T ss_pred CCeeccHHHHHHHHHHHHHHHHhcCCeeeeeccccCCccccccchhhhhhcCc---------cccccCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999 999999999999999999997 778999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHhh-----cCCCCCCcchhhhhcCCCCCchHHHHHHHHHHHHHHh
Q 009296 359 STLFAMTYGLGFATLSATLVHIFLFSGRDLWEQTRRAF-----GGHKKVDIHTKLMQKYKSVPMWWFWVILVVNIALIIF 433 (538)
Q Consensus 359 s~~~~~~~~~~fa~~~a~i~~~~l~~~~~i~~~~~~~~-----~~~~~~D~h~~lm~~Y~evP~Wwy~~~~v~s~~~~i~ 433 (538)
++.+.++|+..|+.++++++|.+++|+|++++++|... .+++++|+|++.|++|||||+|||+.+++++++++++
T Consensus 293 ~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~vP~ww~~~~~~~~~v~~~~ 372 (624)
T PF03169_consen 293 SGLFALSYGWSFAALTASIVHAILWHWKAIWQAFKQSKSSQRSSKSSEDDPHYRLMRTYKEVPMWWYLAGLVVSFVLAII 372 (624)
T ss_pred hHHHHHhhcccchhhHHHHHHHHHHHHHHHHhhhhhhcccccccccccCCchhhhhhhcCCcchHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998875431 1456789999999999999999999999999999999
Q ss_pred hhhhccCCcCCchHHHHHHHHHHHHHhhcceeeEeeccC--CCchhhHHhhhhhhccCCCcchhhHHHHHhhHhHHHHHH
Q 009296 434 ACQYYNESLQLPWWGVLLACGIAVFFTLPIGIINATTNQ--QPGLNIITEYVIGYLYPERPVANMCFKVYGYISMNQGLT 511 (538)
Q Consensus 434 ~~~~~~~~~~lP~w~~~lai~l~~v~~ip~g~i~a~T~~--~~~l~~isqli~G~~~pG~p~anm~f~~~~~~~~~qa~~ 511 (538)
+++.+++++++|+|++++++++++++++|.+++.|+||+ ..++|+++|+++|++.||+|++||+++++++++++||.|
T Consensus 373 ~~~~~~~~~~~p~~~~ilai~la~v~~~~~~~~~g~t~~~P~~~~~~~sqli~g~~~pg~~~a~l~~~~~~~~~~~qa~~ 452 (624)
T PF03169_consen 373 VVEAWFGQTQMPWWGLILAILLAFVFSIPSGRITGETGINPVSGLNILSQLIFGLLLPGNPIANLLFGGYGYAAASQAGD 452 (624)
T ss_pred HHhhhhcccCCchhhhHHHHHHHHHHHHHHHHHhhhcCCCcchhhhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 999996558999999999999999999999999999999 558999999999999999999999999999999999999
Q ss_pred HhhhhhhhhhcCCChHHHHHHhhhhcC
Q 009296 512 FLADFKLGHYMKIPPRAMFMVRLWEHL 538 (538)
Q Consensus 512 ~~~DlKlGhY~kiPPR~~F~~Qi~g~~ 538 (538)
++||||+|||+|+|||+||.+|++|++
T Consensus 453 ~~~DlK~G~~l~~~Pr~~f~~Q~iG~~ 479 (624)
T PF03169_consen 453 LMQDLKTGHYLGIPPRAQFYAQIIGTI 479 (624)
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 999999999999999999999999974
No 5
>TIGR00733 putative oligopeptide transporter, OPT family. This protein represents a small family of integral membrane proteins from Gram-negative bacteria, a Gram-positive bacteria, and an archaeal species. Members of this family contain 15 to 18 GES predicted transmembrane regions, and this family has extensive homology to a family of yeast tetrapeptide transporters, including isp4 (Schizosaccharomyces pombe) and Opt1 (Candida albicans). EspB, an apparent equivalog from Myxococcus xanthus, shares an operon with a two component system regulatory protein, and is required for the normal timing of sporulation after the aggregation of cells. This is consistent with a role in transporting oligopeptides as signals across the membrane.
Probab=100.00 E-value=1.2e-40 Score=368.30 Aligned_cols=407 Identities=13% Similarity=0.109 Sum_probs=298.8
Q ss_pred cchhhhhHHHHHHHHHHHhhhhhcccccccchhHHHHHHHHHhhhhhhccccCceeeecCccceeecCCCCCCchhHHHH
Q 009296 43 VTFRMWVLGVVSCVVLSFVNQFFWYRTQPLAVTSISAQIAVVPLGHLMARTLPHRIFFKDTMFEFDLNSGPFNIKEHVLI 122 (538)
Q Consensus 43 ~TfRa~~lG~~~~~~~~~~N~~f~~r~~~i~i~~~~~qll~~plG~~~a~~lP~~~~~~~~~~~~~lNPGpF~~KEh~li 122 (538)
+|+|+.++|++++++.++.|.|+++|.+.+.-.++.+.++++.+-|.+.| +|++||+++
T Consensus 2 lT~Ravi~G~~lg~l~~asn~YlgLk~G~t~~~sI~aAil~~~ilr~~~~---------------------~t~~Enniv 60 (591)
T TIGR00733 2 YTVRGFILGALITIIFTAANVYLGLYVGMTFAASIPAAVISMAVLMAFRD---------------------RSILENNMV 60 (591)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHhcc---------------------CChhHHHHH
Confidence 79999999999999999999999999999999999999999999997642 699999999
Q ss_pred HHHhhcccchhhHhhHHHHHHHHhc----CCCChHHHHHHHHHHHHhhhhhhhhccceeeccCCCcCCchhHHHHHHHHh
Q 009296 123 TIFANSGAGTVYATHILSAVKLLYK----RKLGFLPAFLVMLTTQVLGFGWAGLFRKYLVEPGEMWWPSNLVQVSLFRAL 198 (538)
Q Consensus 123 ~imAs~a~~~~~a~~vi~~~~~fy~----~~~~~~~~il~~lstq~~G~g~AGllR~~lV~p~~~iwP~~L~t~al~~~L 198 (538)
|++|+++++.+ +++...+.++- ++.+++..++++++..++|..|+.|+||.+|.++++.||++.|++.++++-
T Consensus 61 QT~asA~~~~a---g~~~~lPAl~~lg~~~~~~~~~~~~~~~~gg~lGvlf~iPLRr~~I~~~~L~fP~G~A~Ae~l~~g 137 (591)
T TIGR00733 61 QTAASAAGTLS---SVIFVLPALLMLGYWTEFPYWITTVICALGGSLGVLFTIPLRRAFVVESKLPYPEGVACAEVLKAG 137 (591)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHhcCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHcc
Confidence 99999987653 46667776542 357899999999999999999999999999999999999999999999963
Q ss_pred hcCCCCCCCCcchHHHHHHHHHHHHHHHhhhhhHHHhhhhhhhhhhhcCCCcceeeccccccccccccceeccccccccc
Q 009296 199 HEKEKRPKGGMTRNQFFLIVLLTSFAYYVLPGYLFALLTTISWVCWISPKSVLVHQLGSGMNGLGIGSIGIDWSTISSYL 278 (538)
Q Consensus 199 H~~~~~~~~~~sr~kfF~~~f~~~f~~~~~P~y~fp~L~~~~~~cwi~p~n~~~~~ifG~~~GlGl~~~tfDW~~i~~~~ 278 (538)
.+ + + +.+|.|.+...++.+++|.++++ +.... ...-.|.. . |.+..-+.+|||+ +++
T Consensus 138 ~~---g-~-~~~~~~~l~~g~~~s~~~~~~~~--~~~~~-~~~~~~~~---------~----g~~~~~~~~~~Sp--alv 194 (591)
T TIGR00733 138 DK---A-R-NGTGAKPIAYGGILASIYAFLGS--LRVWS-GTLSAAKL---------V----GRRALYFGSDLSL--ALI 194 (591)
T ss_pred cc---c-c-chhhHHHHHHHHHHHHHHHHHHH--hccCC-chHHHHHh---------c----CCcceEEEecccH--HHH
Confidence 22 1 1 23678899999999999998843 11111 11111211 1 1111225689998 479
Q ss_pred CCcccccHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCcccccccCCceeeceeeecCCcccCHHHHhccCCcch
Q 009296 279 GSPLASPWFATANVAVGFFLVMYVMVPLCYWLNFYKAKNFPIYSKDLFKSNGEDYDILSIVNANFRLDRAAYAKNGPVNL 358 (538)
Q Consensus 279 g~pl~~P~~a~~n~~~G~vl~~~il~p~lyy~n~~~~~~~P~~S~~~fd~~G~~Yn~s~il~~~~~ld~~~y~~ysp~~~ 358 (538)
|.++++|..+.+++++|.+++|+++.|.+..+.+. ....|. . . ....+-.++++|.
T Consensus 195 G~G~ivG~~v~~s~~~G~vlaWgvl~P~l~~~~~~-~~~~~~--------------------~--~-~~~~vw~~~vR~i 250 (591)
T TIGR00733 195 GVGYLVGLNIGFAMFLGGAIAWGVAIPIYTAKMGS-PGDLSA--------------------L--D-LAWTIWSTKVRYI 250 (591)
T ss_pred cCceeeChHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCccH--------------------H--H-HHHHHHhcccchh
Confidence 99999999999999999999999999998865322 100000 0 0 0011112334443
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHhhc--CCCCCCcchhhhhcCCCCCchHHHHHHHHHHHHHHhhhh
Q 009296 359 STLFAMTYGLGFATLSATLVHIFLFSGRDLWEQTRRAFG--GHKKVDIHTKLMQKYKSVPMWWFWVILVVNIALIIFACQ 436 (538)
Q Consensus 359 s~~~~~~~~~~fa~~~a~i~~~~l~~~~~i~~~~~~~~~--~~~~~D~h~~lm~~Y~evP~Wwy~~~~v~s~~~~i~~~~ 436 (538)
.. -+++++.+.. ++...|.+++.+|+..+ ++++ +.+ ..-|..+|+|.||-..++++ +++. +..
T Consensus 251 Gv---------g~m~~~gl~~-l~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~r~~~dip~~~v~~~~~~-~~~~--~~~ 315 (591)
T TIGR00733 251 GV---------GAIVVAALWT-LLKLRGPIARGIKAGLEAARRRQ-AGE-AVLRTEEDLPINIVLTLVAL-FVIP--LAD 315 (591)
T ss_pred hH---------HHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcccc-ccc-ccccccccccHHHHHHHHHH-HHHH--HHH
Confidence 32 2333444444 66667777766654321 1111 111 12455678998864333222 2221 221
Q ss_pred hccCCcCCch---------HHHHHHHHHHHHHhhcceeeEee--ccCCC--chhhHHhhhhhhcc------------CCC
Q 009296 437 YYNESLQLPW---------WGVLLACGIAVFFTLPIGIINAT--TNQQP--GLNIITEYVIGYLY------------PER 491 (538)
Q Consensus 437 ~~~~~~~lP~---------w~~~lai~l~~v~~ip~g~i~a~--T~~~~--~l~~isqli~G~~~------------pG~ 491 (538)
+ .++.|. .+.+++++++++++...|.+.++ |+.+| ++++++|++.+.+. |+.
T Consensus 316 ~---~~~~~~~~~~~~~~~~~~~la~vl~f~~a~v~g~~~G~iGts~nPvsg~~~~t~l~~a~~~~~~g~~~~~~~~~~~ 392 (591)
T TIGR00733 316 F---LLYAPILHNIGMAIAVMAVLMLIIGFFVAAIAGYMAGLVGSSNSPISGIGIMSVLFTALILKGLGLSGTGSQIPEL 392 (591)
T ss_pred H---hcCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHHHHhcCcccCccccchh
Confidence 2 344443 57788889999999888988889 66677 79999999999998 455
Q ss_pred cchhhHHHHHhhHhHHHHHHHhhhhhhhhhcCCChHHHHHHhhhhcC
Q 009296 492 PVANMCFKVYGYISMNQGLTFLADFKLGHYMKIPPRAMFMVRLWEHL 538 (538)
Q Consensus 492 p~anm~f~~~~~~~~~qa~~~~~DlKlGhY~kiPPR~~F~~Qi~g~~ 538 (538)
..+|++.+.....+++||.|++||||+||+++.+||+||.+|++|++
T Consensus 393 v~~~L~~g~vv~~aa~~AgD~mqDlKtG~LlGatPr~Q~~aq~iG~~ 439 (591)
T TIGR00733 393 MAATIFTAAVVCTAAAISNDNLQDLKTGYLVGATPWRQQVALIIGTF 439 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhHhhhhcCCCHHHHHHHHHHHHH
Confidence 67799999999999999999999999999999999999999999973
No 6
>COG1297 Predicted membrane protein [Function unknown]
Probab=99.93 E-value=6.8e-25 Score=235.01 Aligned_cols=418 Identities=14% Similarity=0.166 Sum_probs=269.6
Q ss_pred CCCccchhhhhHHHHHHHHHHHhhhhhcccccccchhHHHHHHHHHhhhhhhccccCceeeecCccceeecCCCCCCchh
Q 009296 39 TMPCVTFRMWVLGVVSCVVLSFVNQFFWYRTQPLAVTSISAQIAVVPLGHLMARTLPHRIFFKDTMFEFDLNSGPFNIKE 118 (538)
Q Consensus 39 ~~p~~TfRa~~lG~~~~~~~~~~N~~f~~r~~~i~i~~~~~qll~~plG~~~a~~lP~~~~~~~~~~~~~lNPGpF~~KE 118 (538)
++|.+|+|..++|++++.+..+.|.|+++|.+....+++-+.++|..+-|.+. ++|+.|
T Consensus 11 ~l~elTlr~vIlGilitvi~~aaN~yLGL~vGlT~a~SIPAAVISmavlk~~~---------------------~~silE 69 (624)
T COG1297 11 FLPELTLRGVILGILITVIFLAANVYLGLKVGLTFASSIPAAVISMAVLKAFK---------------------GSSILE 69 (624)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHhhhheecceehhhhHHHHHHHHHHHHhC---------------------ccchhh
Confidence 68999999999999999999999999999999999999999999988877663 369999
Q ss_pred HHHHHHHhhcccchhh-HhhHHHHHHH-HhcCCCChHHHHHHHHHHHHhhhhhhhhccceeeccCCCcCCchhHHHHHHH
Q 009296 119 HVLITIFANSGAGTVY-ATHILSAVKL-LYKRKLGFLPAFLVMLTTQVLGFGWAGLFRKYLVEPGEMWWPSNLVQVSLFR 196 (538)
Q Consensus 119 h~li~imAs~a~~~~~-a~~vi~~~~~-fy~~~~~~~~~il~~lstq~~G~g~AGllR~~lV~p~~~iwP~~L~t~al~~ 196 (538)
|+++|++||++++.+. ...++..... -|.++.++.--...+..-.++|..|..++||.+|.++++.||++.|++.+++
T Consensus 70 NNmVQT~ASAagtlsa~vIFviPgl~m~g~w~~fpf~~t~~i~~lggiLGvlftiPLRra~Iv~skLPyPeGvAaAEvL~ 149 (624)
T COG1297 70 NNMVQTQASAAGTLSAGVIFVLPGLLMLGYWSGFPFWQTAIICALGGILGVLFTIPLRRAMIVESKLPYPEGVAAAEVLK 149 (624)
T ss_pred hHHHHHHHhhhccccccEEEechhHHhhccccCCcHHHHHHHHHHHhhcceEEEEEeeeeeeccCCCCCCCchhHHHHHH
Confidence 9999999999876533 2234444443 3557788887777777778999999999999999999999999999999999
Q ss_pred HhhcCCCCCCCCcchHHHHHHHHHHHHHHHhhhhhHHHhhhhhhhhhhhcCCCcceeeccccccccccccceeccccccc
Q 009296 197 ALHEKEKRPKGGMTRNQFFLIVLLTSFAYYVLPGYLFALLTTISWVCWISPKSVLVHQLGSGMNGLGIGSIGIDWSTISS 276 (538)
Q Consensus 197 ~LH~~~~~~~~~~sr~kfF~~~f~~~f~~~~~P~y~fp~L~~~~~~cwi~p~n~~~~~ifG~~~GlGl~~~tfDW~~i~~ 276 (538)
+..+++... |..|-..+......+|-++-+=+--+-+ ++-+|.. .++ +..-+..|.+. +
T Consensus 150 ~g~~~~gd~----~g~~~i~~g~~~~~~~~~l~~g~~~~~~--~~~~~~~----------~~~---~~~~lg~~~S~--A 208 (624)
T COG1297 150 AGNQREGDA----SGIKLIALGGALAALYSLLASGLRVIAS--SLSAAFS----------VGR---AAFALGLGLSL--A 208 (624)
T ss_pred hcCCCCCCc----ccchhhhhhhHHHHHHHHHhccceeehh--hHHHHHH----------hcc---hhhhhcccccH--H
Confidence 997433221 4556666777777777766552111111 1222332 111 01112233334 4
Q ss_pred ccCCcccccHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCcccccccCCceeeceeeecCCcccCHHHHhccC--
Q 009296 277 YLGSPLASPWFATANVAVGFFLVMYVMVPLCYWLNFYKAKNFPIYSKDLFKSNGEDYDILSIVNANFRLDRAAYAKNG-- 354 (538)
Q Consensus 277 ~~g~pl~~P~~a~~n~~~G~vl~~~il~p~lyy~n~~~~~~~P~~S~~~fd~~G~~Yn~s~il~~~~~ld~~~y~~ys-- 354 (538)
++|.+-++++.+.+-++.|.+++|.+..|++-+.. |.. + |.++-.++.+-+|
T Consensus 209 liG~GylvGl~~~iaml~G~~iaWgvavP~~~~~~-~~p------~-------------------~~~~~~~a~~vW~s~ 262 (624)
T COG1297 209 LIGAGYLVGLPAGIAMLIGIFIAWGVAVPLLTLIV-PGP------S-------------------DQEAGVQAWKVWSSK 262 (624)
T ss_pred HhCceEEecchHHHHHHHHHHHHHHHHHHHHHhcc-cCC------C-------------------chhHHHHHHHHhhhe
Confidence 68999999999999999999999999999765432 211 1 1111111111111
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHhhchhhHH----HHHHhhcCCCCCCcchhhhhcCCCCCchHHHHHHHHHHHH
Q 009296 355 PVNLSTLFAMTYGLGFATLSATLVHIFLFSGRDLWE----QTRRAFGGHKKVDIHTKLMQKYKSVPMWWFWVILVVNIAL 430 (538)
Q Consensus 355 p~~~s~~~~~~~~~~fa~~~a~i~~~~l~~~~~i~~----~~~~~~~~~~~~D~h~~lm~~Y~evP~Wwy~~~~v~s~~~ 430 (538)
-+|+.+ +-..+.+ .++++...|.+.| .+++.+.+++ .-.| -|..+|+|.-|-...++...+-
T Consensus 263 VrfIGa--------G~i~i~~--~wtl~~l~~pi~~gi~~~f~~~r~~~~-~~~~---~rte~Dl~~~~~~~~~~~~~v~ 328 (624)
T COG1297 263 VRFIGA--------GAIAIAA--IWTLISLLGPILRGIKATFESARGRRR-AGAV---SRTERDLPPKLVLLVLLATVVA 328 (624)
T ss_pred eEEeeh--------hHHHHHH--HHHHHHHHhHHHHHHHHHHHHhhcccc-cccc---cchhhcCChhhHHHHHHHHHHH
Confidence 233332 2222222 2334444455444 4443321111 1111 1345677776654444433332
Q ss_pred HHhhhhhccCCc---CCc----hHHHHHHHHHHHHHhhcceeeEee----ccCCCchhhHHhhhh------------hhc
Q 009296 431 IIFACQYYNESL---QLP----WWGVLLACGIAVFFTLPIGIINAT----TNQQPGLNIITEYVI------------GYL 487 (538)
Q Consensus 431 ~i~~~~~~~~~~---~lP----~w~~~lai~l~~v~~ip~g~i~a~----T~~~~~l~~isqli~------------G~~ 487 (538)
.++.....-+++ ..- .-+.++++++++.+.-..|.+.++ ++--.++..++.++. +..
T Consensus 329 l~~~~~~~l~~~~~~~~~~~~~~~~~~i~~v~GflvaAv~gymagLVgSssspiSGi~i~~v~~~~l~~l~~G~~~~~~~ 408 (624)
T COG1297 329 LGLLLAHFLRGTPLSSCRWLLVVVMVLIAVVIGFLVAAVCGYMAGLVGSSSSPISGIGILSVTLLSLLILILGQSGGLFI 408 (624)
T ss_pred HHHHHHhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchHHHHHHHHHHHHHHHhcccccccc
Confidence 222222211011 112 334455555566665555555554 222235665555443 333
Q ss_pred cCCCc----chhhHHHHHhhHhHHHHHHHhhhhhhhhhcCCChHHHHHHhhhhcC
Q 009296 488 YPERP----VANMCFKVYGYISMNQGLTFLADFKLGHYMKIPPRAMFMVRLWEHL 538 (538)
Q Consensus 488 ~pG~p----~anm~f~~~~~~~~~qa~~~~~DlKlGhY~kiPPR~~F~~Qi~g~~ 538 (538)
-|... ..+++..+....++.++.|.+||||+||+.+..||+|+.+|++|.+
T Consensus 409 ~~~~~~~~~~~~~~t~~vv~a~A~is~DnlQDLKTG~LvgATPwkQqvaliiG~~ 463 (624)
T COG1297 409 DPLMRKFLVAATLFTASVVAAVAAISNDNLQDLKTGYLVGATPWKQQVALIIGCF 463 (624)
T ss_pred CcccchhHHHHHHHHHHHHHHHHHhhccchhhhhhCeeecCChHHHHHHHHHhHH
Confidence 45333 5688889999999999999999999999999999999999999963
No 7
>PF03169 OPT: OPT oligopeptide transporter protein; InterPro: IPR004813 The transporter OPT family are transporters of small oligopeptides, demonstrated experimentally in three different species of yeast. OPT1 is not a member of the ABC or PTR membrane transport families [].; GO: 0055085 transmembrane transport
Probab=87.94 E-value=23 Score=40.53 Aligned_cols=214 Identities=14% Similarity=0.132 Sum_probs=104.7
Q ss_pred cchhhhhHHHHHHHHHHHhhhhhcc---cccc--cchhHHHHHHHHHhhhhhhccccCceee-ec-----CccceeecCC
Q 009296 43 VTFRMWVLGVVSCVVLSFVNQFFWY---RTQP--LAVTSISAQIAVVPLGHLMARTLPHRIF-FK-----DTMFEFDLNS 111 (538)
Q Consensus 43 ~TfRa~~lG~~~~~~~~~~N~~f~~---r~~~--i~i~~~~~qll~~plG~~~a~~lP~~~~-~~-----~~~~~~~lNP 111 (538)
..-+.++.+++.+.+.+..-....+ +.|. ..++-.+.-+++.+.++..+..==++.. .. ..+. +-|
T Consensus 354 vP~ww~~~~~~~~~v~~~~~~~~~~~~~~~p~~~~ilai~la~v~~~~~~~~~g~t~~~P~~~~~~~sqli~g~---~~p 430 (624)
T PF03169_consen 354 VPMWWYLAGLVVSFVLAIIVVEAWFGQTQMPWWGLILAILLAFVFSIPSGRITGETGINPVSGLNILSQLIFGL---LLP 430 (624)
T ss_pred cchHHHHHHHHHHHHHHHHHHhhhhcccCCchhhhHHHHHHHHHHHHHHHHHhhhcCCCcchhhhHHHHHHHHH---HHh
Confidence 4556777777766666655554444 5555 5566667777777777776643100000 00 0000 123
Q ss_pred CCCCchhHHHHHHHhhcccchhhHhhHHHHHHH-HhcCCCChHHHHHHHHHHHHhhhhhhhhccceeecc----------
Q 009296 112 GPFNIKEHVLITIFANSGAGTVYATHILSAVKL-LYKRKLGFLPAFLVMLTTQVLGFGWAGLFRKYLVEP---------- 180 (538)
Q Consensus 112 GpF~~KEh~li~imAs~a~~~~~a~~vi~~~~~-fy~~~~~~~~~il~~lstq~~G~g~AGllR~~lV~p---------- 180 (538)
|+ +.=+++....+.++ .+-+.+...-+|. +|- +.++-.+...-+...++|...+...-+.+-.+
T Consensus 431 g~--~~a~l~~~~~~~~~--~~qa~~~~~DlK~G~~l-~~~Pr~~f~~Q~iG~~ig~~v~~~v~~l~~~~~~~~~~~~~~ 505 (624)
T PF03169_consen 431 GN--PIANLLFGGYGYAA--ASQAGDLMQDLKTGHYL-GIPPRAQFYAQIIGTIIGAFVAVAVMRLLNQAYPCGPDQGDS 505 (624)
T ss_pred cc--HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH-CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccc
Confidence 33 11111111111111 1223344444443 332 23444444444444455555555443333222
Q ss_pred CCCcCCchhHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHhhhhhHHHhhhhhhhhhhhcCCCcceeecccccc
Q 009296 181 GEMWWPSNLVQVSLFRALHEKEKRPKGGMTRNQFFLIVLLTSFAYYVLPGYLFALLTTISWVCWISPKSVLVHQLGSGMN 260 (538)
Q Consensus 181 ~~~iwP~~L~t~al~~~LH~~~~~~~~~~sr~kfF~~~f~~~f~~~~~P~y~fp~L~~~~~~cwi~p~n~~~~~ifG~~~ 260 (538)
..+.=|+....+++.+.+-+..+ . .+++.+.+++++.++-.+ +.++. -...|+. ..+|+..
T Consensus 506 ~~~~ap~a~~~aav~~g~~~~~~--~---~~~~~~~~~~~~G~~~~i-~~~l~---------~~~~P~~----~~~~~~~ 566 (624)
T PF03169_consen 506 FSCPAPQAFAWAAVAWGLIGPQR--G---LPYSALPWGFLIGAVLPI-LFWLL---------QRKFPSP----LAFGGAS 566 (624)
T ss_pred CcCcchHHHHHHHHHHHhcCCcc--c---chHHHHHHHHHHHHHHHH-HHHHH---------HhhCChh----heeeecc
Confidence 33444566666777777766533 1 677788888777666654 33332 1112322 2334321
Q ss_pred ccccccceecccccccccCCcccccHHHHHHHHHHHHHHHH
Q 009296 261 GLGIGSIGIDWSTISSYLGSPLASPWFATANVAVGFFLVMY 301 (538)
Q Consensus 261 GlGl~~~tfDW~~i~~~~g~pl~~P~~a~~n~~~G~vl~~~ 301 (538)
.-|+++|......+++|.++.++
T Consensus 567 ------------------~~~~~~~~~~~~~~~iG~~~~~~ 589 (624)
T PF03169_consen 567 ------------------SIGFYLPSNYTSAIFIGGLFQFY 589 (624)
T ss_pred ------------------cccccchhHHHHHHHHHHHHHHH
Confidence 14567787777888888877644
No 8
>COG0628 yhhT Predicted permease, member of the PurR regulon [General function prediction only]
Probab=64.73 E-value=46 Score=35.15 Aligned_cols=148 Identities=15% Similarity=0.198 Sum_probs=85.2
Q ss_pred HHHHHHHHhhchhhHHHHHHhhcCCCCCCcchhhhhc-CCCCCchHHHHHHHHHHHHHHhhhhhccCCcCCchHHHHHHH
Q 009296 375 ATLVHIFLFSGRDLWEQTRRAFGGHKKVDIHTKLMQK-YKSVPMWWFWVILVVNIALIIFACQYYNESLQLPWWGVLLAC 453 (538)
Q Consensus 375 a~i~~~~l~~~~~i~~~~~~~~~~~~~~D~h~~lm~~-Y~evP~Wwy~~~~v~s~~~~i~~~~~~~~~~~lP~w~~~lai 453 (538)
-.++..++.+++++++.+++.. .++..+...+..++ .+.+-.|..+ -.+++++.++.+.-.+. -.|+|- ++++++
T Consensus 165 ~~~~ff~L~d~~~~~~~~~~~~-p~~~~~~~~~~l~~~~~~~~~y~~g-q~i~al~~gi~~~igl~-ilgvp~-alllgi 240 (355)
T COG0628 165 LVLLFFLLLDGERLRRKLIKLL-PRKLRKRARRILSEVNATLSGYLRG-QVLVALIVGILTGIGLL-ILGVPY-ALLLGL 240 (355)
T ss_pred HHHHHHHHcCHHHHHHHHHHhC-CHHHHhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-HHcccH-HHHHHH
Confidence 3445567788889988876653 12212222222222 3444444443 33344444444222210 356754 667888
Q ss_pred HHHHHHhhc-ceeeEeeccCCCchhhHHhhhhhhccCCCcchhhHHHHHhhHhHHHHHH-HhhhhhhhhhcCCChHHHHH
Q 009296 454 GIAVFFTLP-IGIINATTNQQPGLNIITEYVIGYLYPERPVANMCFKVYGYISMNQGLT-FLADFKLGHYMKIPPRAMFM 531 (538)
Q Consensus 454 ~l~~v~~ip-~g~i~a~T~~~~~l~~isqli~G~~~pG~p~anm~f~~~~~~~~~qa~~-~~~DlKlGhY~kiPPR~~F~ 531 (538)
+.++.-.+| .|- .+..+-=.+.++..-| ..-...-.+++...+|-.+ +++-.=+|.-+|++|=.++.
T Consensus 241 l~g~~~lIP~iG~---------~i~~ip~~i~al~~~~--~~~~l~~~~~~~vi~~i~~n~l~P~l~g~~~~l~p~~ili 309 (355)
T COG0628 241 LAGLLSLIPYIGP---------VIGLIPAVIIALLQGG--PWGALLVLIVFLVIQQIEGNILRPKLMGKRLGLHPLVILL 309 (355)
T ss_pred HHHHHHhhccccc---------HHHHHHHHHHHHHhcc--hHHHHHHHHHHHHHHHHhcceeccccccccCCCCHHHHHH
Confidence 877777777 442 3334444555555555 3334445555666665554 57788889999999999999
Q ss_pred Hhhhhc
Q 009296 532 VRLWEH 537 (538)
Q Consensus 532 ~Qi~g~ 537 (538)
+.+.|.
T Consensus 310 sll~g~ 315 (355)
T COG0628 310 SLLGGG 315 (355)
T ss_pred HHHHHH
Confidence 988763
No 9
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=51.49 E-value=33 Score=34.34 Aligned_cols=58 Identities=9% Similarity=0.273 Sum_probs=34.2
Q ss_pred chhhHHHHHHhhcCCCCCCcchhhhhcCCCCCchHHHHHHHHHHHHHHhhhhhccCCcCCchHHHHHHHHHHHHHh
Q 009296 385 GRDLWEQTRRAFGGHKKVDIHTKLMQKYKSVPMWWFWVILVVNIALIIFACQYYNESLQLPWWGVLLACGIAVFFT 460 (538)
Q Consensus 385 ~~~i~~~~~~~~~~~~~~D~h~~lm~~Y~evP~Wwy~~~~v~s~~~~i~~~~~~~~~~~lP~w~~~lai~l~~v~~ 460 (538)
.++||+.++-.. +.+|.+++|..++ +++.+++++++... ++-+|+.+++++.++++..
T Consensus 10 ~~Qi~q~y~~tr-------------k~dp~l~~~ml~a-~l~~~~v~v~ig~l----~~~~~~~~i~gi~~g~l~a 67 (224)
T PF13829_consen 10 RKQIWQAYKMTR-------------KEDPKLPWLMLGA-FLGPIAVFVLIGLL----FGSWWYWLIIGILLGLLAA 67 (224)
T ss_pred HHHHHHHHHHHH-------------HHCcchHHHHHHH-HHHHHHHHHHHHHH----HccHHHHHHHHHHHHHHHH
Confidence 356677665541 3356676555444 44445555555444 3466778888888777655
No 10
>PRK10983 putative inner membrane protein; Provisional
Probab=45.87 E-value=1.7e+02 Score=31.28 Aligned_cols=47 Identities=4% Similarity=-0.063 Sum_probs=30.8
Q ss_pred CCcchhhHHHHHhhHhHHHHHHHhhhhhhhhhcCCChHHHHHHhhhhc
Q 009296 490 ERPVANMCFKVYGYISMNQGLTFLADFKLGHYMKIPPRAMFMVRLWEH 537 (538)
Q Consensus 490 G~p~anm~f~~~~~~~~~qa~~~~~DlKlGhY~kiPPR~~F~~Qi~g~ 537 (538)
|++..-.....++ ....+..+.++=.=+|.-.++||=.++.+.+.|.
T Consensus 273 g~~~~~~~~~~~~-~vv~~idnil~P~l~g~~~~l~~~~il~~~~~G~ 319 (368)
T PRK10983 273 GDTTWGTVLLVWS-CVVGTLDNVIRPMLIRMGADLPMILILSGVIGGL 319 (368)
T ss_pred CChHHHHHHHHHH-HHHHHhhheeeeeeecCCCCCCHHHHHHHHHHHH
Confidence 4433333333333 2344555677777788999999999999888774
No 11
>TIGR02872 spore_ytvI sporulation integral membrane protein YtvI. Three lines of evidence show this protein to be involved in sporulation. First, it is under control of a sporulation-specific sigma factor, sigma-E. Second, mutation leads to a sporulation defect. Third, it if found in exactly those genomes whose bacteria are capable of sporulation, except for being absent in Clostridium acetobutylicum ATCC824. This protein has extensive hydrophobic regions and is likely an integral membrane protein.
Probab=45.20 E-value=2e+02 Score=29.53 Aligned_cols=103 Identities=11% Similarity=0.081 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHhhhhhccCCcCCchHHHHHHHHHHHHHhhc-ceeeEeeccCCCchhhHHhhhhhhccCCCcchhhHHHH
Q 009296 422 VILVVNIALIIFACQYYNESLQLPWWGVLLACGIAVFFTLP-IGIINATTNQQPGLNIITEYVIGYLYPERPVANMCFKV 500 (538)
Q Consensus 422 ~~~v~s~~~~i~~~~~~~~~~~lP~w~~~lai~l~~v~~ip-~g~i~a~T~~~~~l~~isqli~G~~~pG~p~anm~f~~ 500 (538)
.-++++++.++++.... .-.|+| .+++++++.++.-.+| +|.. +..+-=.+..+.. |++..-+....
T Consensus 211 ~~~~~~~i~g~~~~i~~-~~~gvp-~a~~~~~l~~~~~~IP~vG~~---------i~~ip~~~~~~~~-~~~~~~~~~~~ 278 (341)
T TIGR02872 211 AQLILVLITFVIVLIGL-LIIGVD-YALTLALIIGIVDILPILGPG---------AVLVPWALYLFIT-GNYAMGIGLLI 278 (341)
T ss_pred HHHHHHHHHHHHHHHHH-HHHcCc-hHHHHHHHHHHHHhhhhcCcH---------HHHHHHHHHHHHc-CCHHHHHHHHH
Confidence 33444444444332222 035787 4677888877777788 4531 1111112222222 33322222111
Q ss_pred HhhHhHHHHHHHhhhhhhhhhcCCChHHHHHHhhhhc
Q 009296 501 YGYISMNQGLTFLADFKLGHYMKIPPRAMFMVRLWEH 537 (538)
Q Consensus 501 ~~~~~~~qa~~~~~DlKlGhY~kiPPR~~F~~Qi~g~ 537 (538)
.+.....-.++++-.=+|.-+++||=.++.+.+.|.
T Consensus 279 -~~~~i~~~~~~l~P~i~g~~~~l~p~~vl~~~l~g~ 314 (341)
T TIGR02872 279 -LYLVVLILRQILEPKVVSSSIGLHPLATLISMYIGL 314 (341)
T ss_pred -HHHHHHHHHHhHhhHHhhccCCCCHHHHHHHHHHHH
Confidence 122222234567777799999999999999988763
No 12
>PRK12287 tqsA pheromone autoinducer 2 transporter; Reviewed
Probab=43.73 E-value=2.7e+02 Score=29.36 Aligned_cols=143 Identities=13% Similarity=0.169 Sum_probs=75.6
Q ss_pred HHHHHhhchhhHHHHHHhhcCCCCCCcchhhhhc-CCCCCchHHHHHHHHHHHHHHhhhhhccCCcCCchHHHHHHHHHH
Q 009296 378 VHIFLFSGRDLWEQTRRAFGGHKKVDIHTKLMQK-YKSVPMWWFWVILVVNIALIIFACQYYNESLQLPWWGVLLACGIA 456 (538)
Q Consensus 378 ~~~~l~~~~~i~~~~~~~~~~~~~~D~h~~lm~~-Y~evP~Wwy~~~~v~s~~~~i~~~~~~~~~~~lP~w~~~lai~l~ 456 (538)
+..++..++.+.+.+++.. .+++ + +.+.+++ .+.+-.|...- ++++++.++.+.-.. .-.|+|. +++++++.+
T Consensus 158 ~ff~l~d~~~~~~~~~~~~-p~~~-~-~~~~l~~~~~~~~~Y~~g~-~i~~~i~gv~~~i~l-~ilgv~~-alllgil~g 231 (344)
T PRK12287 158 VVFMLLEVPQLPGKFQQMM-ARPV-E-GMAAIQRALDSVSHYLVLK-TAISIITGLVAWAML-AALDVRF-AFVWGLLAF 231 (344)
T ss_pred HHHHHHccHHHHHHHHHHc-CCch-h-HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH-HHhCCCh-HHHHHHHHH
Confidence 3445666777777776553 2111 1 2222322 33443433333 334554444432221 0356665 566777777
Q ss_pred HHHhhcc-eeeEeeccCCCchhhHHhhhhhhccCCCcchhhHHHHHhhHhHHHH-HHHhhhhhhhhhcCCChHHHHHHhh
Q 009296 457 VFFTLPI-GIINATTNQQPGLNIITEYVIGYLYPERPVANMCFKVYGYISMNQG-LTFLADFKLGHYMKIPPRAMFMVRL 534 (538)
Q Consensus 457 ~v~~ip~-g~i~a~T~~~~~l~~isqli~G~~~pG~p~anm~f~~~~~~~~~qa-~~~~~DlKlGhY~kiPPR~~F~~Qi 534 (538)
+.-.+|. |-. +..+-=.+.++...| +.. ...-...+...+|. .++++=.=+|+-++++|=.++.+.+
T Consensus 232 lln~IPyiG~~---------i~~ip~~l~~~~~~~-~~~-al~v~i~~~iiq~i~~nvi~P~i~g~~v~l~P~~vllsil 300 (344)
T PRK12287 232 ALNYIPNIGSV---------LAAIPPIIQVLVFNG-FYD-ALLVLAGYLLINLVFGNILEPRIMGRGLGLSTLVVFLSLI 300 (344)
T ss_pred HHHhhcchhHH---------HHHHHHHHHHHHhcC-chH-HHHHHHHHHHHHHHHhcchhhhhhhccCCCCHHHHHHHHH
Confidence 7777773 421 222222223333333 221 22223455555555 5678888899999999999999988
Q ss_pred hhc
Q 009296 535 WEH 537 (538)
Q Consensus 535 ~g~ 537 (538)
+|.
T Consensus 301 ~gg 303 (344)
T PRK12287 301 FWG 303 (344)
T ss_pred HHH
Confidence 763
No 13
>PF01594 UPF0118: Domain of unknown function DUF20; InterPro: IPR002549 This is a family of hypothetical proteins. A number of the sequence records state they are transmembrane proteins or putative permeases. It is not clear what source suggested that these proteins might be permeases and this information should be treated with caution.
Probab=36.92 E-value=2.4e+02 Score=28.90 Aligned_cols=151 Identities=14% Similarity=0.196 Sum_probs=73.3
Q ss_pred HHHHHHHHHHhhchhhHHHHHHhhcCCCCCCcchhhhhc-CCCCCchHHHHHHHHHHHHHHhhhhhccCCcCCchHHHHH
Q 009296 373 LSATLVHIFLFSGRDLWEQTRRAFGGHKKVDIHTKLMQK-YKSVPMWWFWVILVVNIALIIFACQYYNESLQLPWWGVLL 451 (538)
Q Consensus 373 ~~a~i~~~~l~~~~~i~~~~~~~~~~~~~~D~h~~lm~~-Y~evP~Wwy~~~~v~s~~~~i~~~~~~~~~~~lP~w~~~l 451 (538)
++-.+++.++.+++.+.+..++...++.+++. .+..++ .+.+-.+.. +-+..++..++.+.... .-.|+|- ++++
T Consensus 149 i~l~~~~~~l~~~~~~~~~~~~~~p~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~i~~-~~~gi~~-~~l~ 224 (327)
T PF01594_consen 149 IFLIFLFFFLLDGEKLRRFLIRLLPPRNRERF-EEILRKIDQSLSAYLK-GQLILALIQGVLTFIGF-SIFGIPY-ALLL 224 (327)
T ss_pred HHHHHHHHHHhhHHHHHHHHHhcccchhhHHH-HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-HHHHHhH-HHHH
Confidence 44445666788888888777554311111111 122332 222333333 33333344433322221 0245554 4445
Q ss_pred HHHHHHHHhhcceeeEeeccCCCchhhHHhhhhhhccCCCcchhhHHHHHhhHhHHHHH-HHhhhhhhhhhcCCChHHHH
Q 009296 452 ACGIAVFFTLPIGIINATTNQQPGLNIITEYVIGYLYPERPVANMCFKVYGYISMNQGL-TFLADFKLGHYMKIPPRAMF 530 (538)
Q Consensus 452 ai~l~~v~~ip~g~i~a~T~~~~~l~~isqli~G~~~pG~p~anm~f~~~~~~~~~qa~-~~~~DlKlGhY~kiPPR~~F 530 (538)
+++.++.-.+|..= +.+..+-=.+..+...+ ........+.....+|-. ++++=.=.|.-+|+||=.++
T Consensus 225 ~~l~~i~~~IP~iG--------~~i~~ip~~i~~~~~~~--~~~~~~~~~~~~~i~~~~~~il~P~i~g~~~~i~p~~~l 294 (327)
T PF01594_consen 225 GVLAFILSFIPYIG--------PIIVLIPAAIYALLQGG--PWAALIVLIVFIVIQQLEDNILRPKIMGRSLGIHPLLIL 294 (327)
T ss_pred HHHHHHHhcccccc--------cHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHhcccccchhhhcccCCCHHHHH
Confidence 55555544455431 11111111222333322 334444555555666655 44555667888999999999
Q ss_pred HHhhhhc
Q 009296 531 MVRLWEH 537 (538)
Q Consensus 531 ~~Qi~g~ 537 (538)
.+.+.|.
T Consensus 295 ~~~~~g~ 301 (327)
T PF01594_consen 295 LAVIIGG 301 (327)
T ss_pred HHHHHHH
Confidence 9988763
No 14
>TIGR02106 cyd_oper_ybgT cyd operon protein YbgT. This model describes a very small (as short as 33 amino acids) protein of unknown function, essentially always found in an operon with CydAB, subunits of the cytochrome d terminal oxidase. It begins with an aromatic motif MWYFXW and appears to contain a membrane-spanning helix. This protein appears to be restricted to the Proteobacteria and exist in a single copy only. We suggest it may be a membrane subunit of the terminal oxidase. The family is named after the E. coli member YbgT. This model excludes the apparently related protein YccB.
Probab=36.67 E-value=35 Score=23.45 Aligned_cols=18 Identities=22% Similarity=0.685 Sum_probs=16.2
Q ss_pred hhhHHHHHHHHHHHhhhh
Q 009296 47 MWVLGVVSCVVLSFVNQF 64 (538)
Q Consensus 47 a~~lG~~~~~~~~~~N~~ 64 (538)
+|++|+.+.+..+.+|..
T Consensus 5 aWilG~~lA~~~~v~~a~ 22 (30)
T TIGR02106 5 AWILGTLLACAFGVLNAM 22 (30)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 799999999999999864
No 15
>PRK14749 hypothetical protein; Provisional
Probab=34.98 E-value=39 Score=23.09 Aligned_cols=18 Identities=22% Similarity=0.528 Sum_probs=16.2
Q ss_pred hhhHHHHHHHHHHHhhhh
Q 009296 47 MWVLGVVSCVVLSFVNQF 64 (538)
Q Consensus 47 a~~lG~~~~~~~~~~N~~ 64 (538)
+|++|+.+.|..+.+|..
T Consensus 5 aWiLG~~lAc~f~ilna~ 22 (30)
T PRK14749 5 LWFVGILLMCSLSTLVLV 22 (30)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 799999999999999864
No 16
>PF08173 YbgT_YccB: Membrane bound YbgT-like protein; InterPro: IPR012994 This family contains a set of membrane proteins, typically 33 amino acids long. The family has no known function, but the protein is found in the operon CydAB in Escherichia coli. Members have a consensus motif (MWYFXW), which is rich in aromatic residues. The protein forms a single membrane-spanning helix. This family seems to be restricted to proteobacteria [].
Probab=34.48 E-value=40 Score=22.79 Aligned_cols=18 Identities=28% Similarity=0.765 Sum_probs=16.0
Q ss_pred hhhHHHHHHHHHHHhhhh
Q 009296 47 MWVLGVVSCVVLSFVNQF 64 (538)
Q Consensus 47 a~~lG~~~~~~~~~~N~~ 64 (538)
+|++|+++++..+.+|..
T Consensus 5 aWilG~~lA~~~~i~~a~ 22 (28)
T PF08173_consen 5 AWILGVLLACAFGILNAM 22 (28)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 799999999999998864
No 17
>PF03606 DcuC: C4-dicarboxylate anaerobic carrier; InterPro: IPR018385 Escherichia coli contains four different secondary carriers (DcuA, DcuB, DcuC, and DctA) for C4-dicarboxylates [, , , ] DcuA is used for aerobic growth on C4-dicarboxylates [, ], whereas the Dcu carriers (encoded by the dcuA, dcuB, and dcuC genes) are used under anaerobic conditions and form a distinct family of carriers [, , , , , ]. Each of the Dcu carriers is able to catalyze the uptake, antiport, and possibly also efflux of C4-dicarboxylates. DcuB is the major C4-dicarboxylate carrier for fumarate respiration with high fumarate-succinate exchange activity. It is synthesized only in the absence of oxygen and nitrate and in the presence of C4-dicarboxylates [, , , ]. DcuA is expressed constitutively in aerobic and anaerobic growth and can substitute for DcuB [, ]. These proteins are members of the C4-dicarboxylate Uptake C (DcuC) family. DcuC has 12 GES predicted transmembrane regions, is induced only under anaerobic conditions, and is not repressed by glucose. DcuC may therefore function as a succinate efflux system during anaerobic glucose fermentation. However, when overexpressed, it can replace either DcuA or DcuB in catalyzing fumarate-succinate exchange and fumarate uptake [, ]. DcuC shows the same transport modes as DcuA and DcuB (exchange, uptake, and presumably efflux of C4-dicarboxylates) [].; GO: 0016021 integral to membrane
Probab=33.41 E-value=1.7e+02 Score=32.45 Aligned_cols=19 Identities=16% Similarity=0.331 Sum_probs=15.2
Q ss_pred CCchHHHHHHHHHHHHHHh
Q 009296 415 VPMWWFWVILVVNIALIIF 433 (538)
Q Consensus 415 vP~Wwy~~~~v~s~~~~i~ 433 (538)
-++++|+.++++.+++-+.
T Consensus 251 ~~~~~~~~~~~l~~~~li~ 269 (465)
T PF03606_consen 251 KRPKLYLLLPVLPFVLLIY 269 (465)
T ss_pred cccceeehHHHHHHHHHHh
Confidence 5688899999998887654
No 18
>PF11292 DUF3093: Protein of unknown function (DUF3093); InterPro: IPR021443 This family of proteins with unknown function appears to be restricted to Actinobacteria. Some members are annotated as alanine rich membrane proteins however this cannot be confirmed.
Probab=31.15 E-value=88 Score=29.24 Aligned_cols=30 Identities=27% Similarity=0.462 Sum_probs=18.1
Q ss_pred CCchHHHHHHHHHHHHHHhhhhhccCCcCCchH
Q 009296 415 VPMWWFWVILVVNIALIIFACQYYNESLQLPWW 447 (538)
Q Consensus 415 vP~Wwy~~~~v~s~~~~i~~~~~~~~~~~lP~w 447 (538)
+|.|||+...+++..++..+... ...++.|
T Consensus 9 ~p~~wW~~~~~~~~~~~~~v~~~---~~~~~~~ 38 (143)
T PF11292_consen 9 VPWWWWLAAAAVAALLAAEVVLG---PPSLWAW 38 (143)
T ss_pred CCHHHHHHHHHHHHHHHHhhhcC---cchHHHH
Confidence 89999988887744444333222 3456555
No 19
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.37 E-value=1.5e+02 Score=26.47 Aligned_cols=38 Identities=11% Similarity=0.142 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHhhhhhccCCcCCchHHHHHHHHHHHHHhh
Q 009296 420 FWVILVVNIALIIFACQYYNESLQLPWWGVLLACGIAVFFTL 461 (538)
Q Consensus 420 y~~~~v~s~~~~i~~~~~~~~~~~lP~w~~~lai~l~~v~~i 461 (538)
+++..++..+++.++=++ .+...|++++-++|+++.-+
T Consensus 52 fIsGilVGa~iG~llD~~----agTsPwglIv~lllGf~AG~ 89 (116)
T COG5336 52 FISGILVGAGIGWLLDKF----AGTSPWGLIVFLLLGFGAGV 89 (116)
T ss_pred HHHHHHHHHHHHHHHHHh----cCCCcHHHHHHHHHHHHHHH
Confidence 577777777787776665 46788899999888876443
No 20
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=21.65 E-value=91 Score=25.81 Aligned_cols=45 Identities=9% Similarity=0.135 Sum_probs=31.4
Q ss_pred hHHHHHHHHHHHHHHhhhhhccCCcCCchHHHHHHHHHHHHHhhcc
Q 009296 418 WWFWVILVVNIALIIFACQYYNESLQLPWWGVLLACGIAVFFTLPI 463 (538)
Q Consensus 418 Wwy~~~~v~s~~~~i~~~~~~~~~~~lP~w~~~lai~l~~v~~ip~ 463 (538)
..+-.+++++.++++++.+.. .+..+..+....+++++++.++|-
T Consensus 11 ~l~~~il~~~~iisfi~Gy~~-q~~~~~~~~~~~g~~~~~lv~vP~ 55 (76)
T PF06645_consen 11 KLMQYILIISAIISFIVGYIT-QSFSYTFYIYGAGVVLTLLVVVPP 55 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhheeCC
Confidence 334456666666776666554 256788888888888888888763
Done!