Query 009296
Match_columns 538
No_of_seqs 124 out of 752
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 23:17:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009296.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009296hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4hkr_A Calcium release-activat 26.2 61 0.0021 30.7 4.3 22 401-424 101-122 (214)
2 3iyz_A Aquaporin-4; water tran 19.9 5.1E+02 0.017 26.2 10.1 15 524-538 171-185 (340)
3 2k1a_A Integrin alpha-IIB; sin 18.4 92 0.0032 22.0 2.9 21 441-461 5-25 (42)
4 2l8s_A Integrin alpha-1; trans 18.2 88 0.003 23.3 2.9 21 441-461 4-24 (54)
5 2l8s_A Integrin alpha-1; trans 15.5 3E+02 0.01 20.5 5.2 38 279-317 2-40 (54)
6 2knc_A Integrin alpha-IIB; tra 7.7 6.8E+02 0.023 18.5 4.9 39 282-321 8-47 (54)
7 3s0x_A Peptidase A24B, FLAK do 6.3 4.2E+02 0.014 25.4 4.1 23 412-434 28-50 (237)
8 4h9n_C Death domain-associated 5.8 1.4E+02 0.0048 28.4 0.4 25 4-28 24-48 (212)
9 2fnf_X Putative RAS effector N 5.2 1.9E+02 0.0064 22.4 0.7 18 26-43 2-19 (72)
10 3arc_L Photosystem II reaction 5.1 4.2E+02 0.014 18.0 2.3 14 447-460 19-32 (37)
No 1
>4hkr_A Calcium release-activated calcium channel protein; ORAI1, eukaryotic membrane protein, membran protein, ION channel, STIM, membrane; 3.35A {Drosophila melanogaster} PDB: 4hks_A
Probab=26.20 E-value=61 Score=30.73 Aligned_cols=22 Identities=23% Similarity=0.486 Sum_probs=13.8
Q ss_pred CCCcchhhhhcCCCCCchHHHHHH
Q 009296 401 KVDIHTKLMQKYKSVPMWWFWVIL 424 (538)
Q Consensus 401 ~~D~h~~lm~~Y~evP~Wwy~~~~ 424 (538)
.++||.| |+.|-|+ .|-|-.++
T Consensus 101 ~esPH~r-~~~yIE~-AW~fST~l 122 (214)
T 4hkr_A 101 HESPHER-LHWYIET-AWAFSTLL 122 (214)
T ss_dssp ---CHHH-HHHHHHH-HHHHHHHH
T ss_pred CCChHHH-HHHHHHH-HHHHHHHH
Confidence 4689999 7889886 56664433
No 2
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus}
Probab=19.89 E-value=5.1e+02 Score=26.23 Aligned_cols=15 Identities=13% Similarity=0.173 Sum_probs=10.5
Q ss_pred CChHHHHHHhhhhcC
Q 009296 524 IPPRAMFMVRLWEHL 538 (538)
Q Consensus 524 iPPR~~F~~Qi~g~~ 538 (538)
++.-..|..|+++|+
T Consensus 171 ~s~~~~f~~E~i~Tf 185 (340)
T 3iyz_A 171 LTAGHGLLVELIITF 185 (340)
T ss_pred cCHHHHHHHHHHHHH
Confidence 455567888888763
No 3
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=18.41 E-value=92 Score=21.99 Aligned_cols=21 Identities=19% Similarity=0.336 Sum_probs=13.1
Q ss_pred CcCCchHHHHHHHHHHHHHhh
Q 009296 441 SLQLPWWGVLLACGIAVFFTL 461 (538)
Q Consensus 441 ~~~lP~w~~~lai~l~~v~~i 461 (538)
+.+.|+|.+++|++.+.++..
T Consensus 5 ~~~vp~wiIi~s~l~GLllL~ 25 (42)
T 2k1a_A 5 ERAIPIWWVLVGVLGGLLLLT 25 (42)
T ss_dssp CCCCCHHHHHHHHHHHHHHHH
T ss_pred cCCcchHHHHHHHHHHHHHHH
Confidence 345677777777666655543
No 4
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=18.21 E-value=88 Score=23.34 Aligned_cols=21 Identities=19% Similarity=0.502 Sum_probs=13.9
Q ss_pred CcCCchHHHHHHHHHHHHHhh
Q 009296 441 SLQLPWWGVLLACGIAVFFTL 461 (538)
Q Consensus 441 ~~~lP~w~~~lai~l~~v~~i 461 (538)
+.++|+|.+++|++.+.++..
T Consensus 4 ~~~vp~WiIi~svl~GLLLL~ 24 (54)
T 2l8s_A 4 PGRVPLWVILLSAFAGLLLLM 24 (54)
T ss_dssp CCCCCTHHHHHHHHHHHHHHH
T ss_pred CccCchHHHHHHHHHHHHHHH
Confidence 456777777777776665544
No 5
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=15.45 E-value=3e+02 Score=20.45 Aligned_cols=38 Identities=18% Similarity=0.426 Sum_probs=24.3
Q ss_pred CCcccccHHHHH-HHHHHHHHHHHHHHHHHHHhccccccC
Q 009296 279 GSPLASPWFATA-NVAVGFFLVMYVMVPLCYWLNFYKAKN 317 (538)
Q Consensus 279 g~pl~~P~~a~~-n~~~G~vl~~~il~p~lyy~n~~~~~~ 317 (538)
|.|--+|+|..+ +..+|.++ ..++.-++|--+.+.-++
T Consensus 2 ~~~~~vp~WiIi~svl~GLLL-L~Lii~~LwK~GFFKR~~ 40 (54)
T 2l8s_A 2 GLPGRVPLWVILLSAFAGLLL-LMLLILALWKIGFFKRPL 40 (54)
T ss_dssp CCCCCCCTHHHHHHHHHHHHH-HHHHHHHHHHHHHTTSCC
T ss_pred CCCccCchHHHHHHHHHHHHH-HHHHHHHHHHcCcccCCC
Confidence 456668988755 55556555 455555788777665544
No 6
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=7.69 E-value=6.8e+02 Score=18.47 Aligned_cols=39 Identities=23% Similarity=0.387 Sum_probs=24.7
Q ss_pred ccccHHHHH-HHHHHHHHHHHHHHHHHHHhccccccCCCCC
Q 009296 282 LASPWFATA-NVAVGFFLVMYVMVPLCYWLNFYKAKNFPIY 321 (538)
Q Consensus 282 l~~P~~a~~-n~~~G~vl~~~il~p~lyy~n~~~~~~~P~~ 321 (538)
--+|+|..+ +..+|.++ ..++.-++|--+.+.-++-|.+
T Consensus 8 ~~vp~wiIi~svl~GLll-L~li~~~LwK~GFFkR~~~~~~ 47 (54)
T 2knc_A 8 RAIPIWWVLVGVLGGLLL-LTILVLAMWKVGFFKRNRPPLE 47 (54)
T ss_dssp TTCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHTTTTCCSCC
T ss_pred CCcchHHHHHHHHHHHHH-HHHHHHHHHHcCcccCCCCCcc
Confidence 347888755 55566555 4555557888887766665543
No 7
>3s0x_A Peptidase A24B, FLAK domain protein; preflagellin peptidase, GXGD protease, aspartyl protease, intramembrane proteolysis; 3.60A {Methanococcus maripaludis}
Probab=6.33 E-value=4.2e+02 Score=25.38 Aligned_cols=23 Identities=9% Similarity=0.343 Sum_probs=17.3
Q ss_pred CCCCCchHHHHHHHHHHHHHHhh
Q 009296 412 YKSVPMWWFWVILVVNIALIIFA 434 (538)
Q Consensus 412 Y~evP~Wwy~~~~v~s~~~~i~~ 434 (538)
++++|.|-+..++++++.+++..
T Consensus 28 ~R~IpN~l~~~ll~~gi~l~~~~ 50 (237)
T 3s0x_A 28 SREIEDYIWIFLAVFGVLFAIYS 50 (237)
T ss_dssp --CTHHHHHHHHHHHHHHHHHHH
T ss_pred hcEeCchhHHHHHHHHHHHHHHH
Confidence 46899999999988888776543
No 8
>4h9n_C Death domain-associated protein 6; histone chaperone, DNA binding protein-apoptosis complex; 1.95A {Homo sapiens} PDB: 4h9o_C
Probab=5.79 E-value=1.4e+02 Score=28.36 Aligned_cols=25 Identities=20% Similarity=0.223 Sum_probs=18.0
Q ss_pred cccchhhhccCcccccccCChhhhh
Q 009296 4 EISEVEAREDGVVVVVDEECVIKQV 28 (538)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~spy~ev 28 (538)
||-.-|.+|.|.++.+++||+|-.+
T Consensus 24 ~Ik~LEe~Evd~d~ld~~dS~Yi~~ 48 (212)
T 4h9n_C 24 EIRRLQEKELDLSELDDPDSAYLQE 48 (212)
T ss_dssp HHHHHHTCEECTTGGGCTTSHHHHH
T ss_pred HHHHHHHhhcCcccccCCCCHHHHH
Confidence 4445566667777777889999876
No 9
>2fnf_X Putative RAS effector NORE1; zinc, signal transduction, apoptosis, cysteine rich domain; NMR {Mus musculus}
Probab=5.18 E-value=1.9e+02 Score=22.37 Aligned_cols=18 Identities=17% Similarity=0.300 Sum_probs=3.9
Q ss_pred hhhhcccCCCCCCCCCcc
Q 009296 26 KQVDLTVPKTDDPTMPCV 43 (538)
Q Consensus 26 ~evr~~v~~~DDp~~p~~ 43 (538)
+|||++....+||+++..
T Consensus 2 ~~~~~~~~~~~dp~~~~~ 19 (72)
T 2fnf_X 2 RDVRSIFEQPQDPRVLAE 19 (72)
T ss_dssp ------------CCCCGG
T ss_pred cchhhhccCCCCcccccc
Confidence 578998888888887643
No 10
>3arc_L Photosystem II reaction center protein L; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz1_L* 3bz2_L* 3kzi_L* 3prq_L* 3prr_L*
Probab=5.14 E-value=4.2e+02 Score=18.00 Aligned_cols=14 Identities=36% Similarity=0.657 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHh
Q 009296 447 WGVLLACGIAVFFT 460 (538)
Q Consensus 447 w~~~lai~l~~v~~ 460 (538)
||+++-.++++.|+
T Consensus 19 ~GLLlifvlavlFs 32 (37)
T 3arc_L 19 LGLLLILVLALLFS 32 (37)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh
Confidence 55555555555443
Done!