Query 009296
Match_columns 538
No_of_seqs 124 out of 752
Neff 6.3
Searched_HMMs 13730
Date Mon Mar 25 23:17:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009296.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/009296hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2axtl1 f.23.31.1 (L:1-37) Pho 6.0 1.6E+02 0.012 18.3 2.3 14 447-460 19-32 (37)
2 d1zcea1 b.122.1.8 (A:2-147) Hy 4.8 97 0.0071 25.5 0.8 15 507-521 34-48 (146)
3 d2evea1 b.122.1.8 (A:2-149) Hy 4.7 1.1E+02 0.0082 25.2 1.1 15 507-521 31-45 (148)
4 d2gbsa1 b.122.1.8 (A:2-137) Hy 4.6 1.1E+02 0.0083 24.8 1.1 15 507-521 33-47 (136)
5 d1zava1 d.58.62.1 (A:1-177) Ri 3.6 1.5E+02 0.011 24.7 0.9 20 518-537 128-147 (177)
6 d1gvda_ a.4.1.3 (A:) c-Myb, DN 3.2 2.3E+02 0.017 18.5 1.6 16 109-124 1-16 (52)
7 d2axtt1 f.23.34.1 (T:1-30) Pho 2.6 5.7E+02 0.042 14.7 3.3 20 364-383 4-23 (30)
8 d1x3ha2 g.39.1.3 (A:43-74) Leu 2.6 2.7E+02 0.02 16.9 1.2 16 318-333 7-22 (32)
9 d2ivxa1 a.74.1.1 (A:7-149) Cyc 2.5 3.5E+02 0.025 20.7 2.2 26 508-535 33-58 (143)
10 d1lghb_ f.3.1.1 (B:) Light-har 2.5 5.9E+02 0.043 16.3 2.8 14 374-387 28-41 (43)
No 1
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=6.05 E-value=1.6e+02 Score=18.30 Aligned_cols=14 Identities=36% Similarity=0.657 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHh
Q 009296 447 WGVLLACGIAVFFT 460 (538)
Q Consensus 447 w~~~lai~l~~v~~ 460 (538)
||+++-.+++++|+
T Consensus 19 ~GlLlifvl~vLFs 32 (37)
T d2axtl1 19 LGLLLILVLALLFS 32 (37)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 55555555555543
No 2
>d1zcea1 b.122.1.8 (A:2-147) Hypothetical protein Atu2648 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=4.82 E-value=97 Score=25.53 Aligned_cols=15 Identities=20% Similarity=0.255 Sum_probs=13.6
Q ss_pred HHHHHHhhhhhhhhh
Q 009296 507 NQGLTFLADFKLGHY 521 (538)
Q Consensus 507 ~qa~~~~~DlKlGhY 521 (538)
.||.++++|+|.|..
T Consensus 34 yqArn~lr~Mk~GD~ 48 (146)
T d1zcea1 34 YQARNNMRAMKIGDK 48 (146)
T ss_dssp HHHHHHHHTCCTTCE
T ss_pred HHHHHHHHhccCCCE
Confidence 799999999999975
No 3
>d2evea1 b.122.1.8 (A:2-149) Hypothetical protein PSPTO5229 {Pseudomonas syringae [TaxId: 317]}
Probab=4.66 E-value=1.1e+02 Score=25.24 Aligned_cols=15 Identities=27% Similarity=0.295 Sum_probs=13.3
Q ss_pred HHHHHHhhhhhhhhh
Q 009296 507 NQGLTFLADFKLGHY 521 (538)
Q Consensus 507 ~qa~~~~~DlKlGhY 521 (538)
.||.++++|||.|-.
T Consensus 31 yqArn~lr~M~~GD~ 45 (148)
T d2evea1 31 YQARNFLRTMAEGDE 45 (148)
T ss_dssp HHHHHHHHHCCTTCE
T ss_pred HHHHHHHHhcccCCE
Confidence 799999999999953
No 4
>d2gbsa1 b.122.1.8 (A:2-137) Hypothetical protein RPA0253 {Rhodopseudomonas palustris [TaxId: 1076]}
Probab=4.63 E-value=1.1e+02 Score=24.78 Aligned_cols=15 Identities=7% Similarity=0.186 Sum_probs=13.3
Q ss_pred HHHHHHhhhhhhhhh
Q 009296 507 NQGLTFLADFKLGHY 521 (538)
Q Consensus 507 ~qa~~~~~DlKlGhY 521 (538)
.||.++++|+|.|..
T Consensus 33 yqArn~mr~M~~GD~ 47 (136)
T d2gbsa1 33 HSAKLHMVAMRRGDR 47 (136)
T ss_dssp HHHHHHHHHCCTTCE
T ss_pred HHHHHHHHHhccCCE
Confidence 799999999999964
No 5
>d1zava1 d.58.62.1 (A:1-177) Ribosomal protein L10 {Thermotoga maritima [TaxId: 2336]}
Probab=3.57 E-value=1.5e+02 Score=24.66 Aligned_cols=20 Identities=15% Similarity=0.283 Sum_probs=17.8
Q ss_pred hhhhcCCChHHHHHHhhhhc
Q 009296 518 LGHYMKIPPRAMFMVRLWEH 537 (538)
Q Consensus 518 lGhY~kiPPR~~F~~Qi~g~ 537 (538)
+-.+.++|.|..-++|++|.
T Consensus 128 i~~la~LPs~eel~a~l~~~ 147 (177)
T d1zava1 128 VENIAKLPSKEELYAMLVGR 147 (177)
T ss_dssp HHHHHTCCCHHHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHH
Confidence 45789999999999999985
No 6
>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=3.18 E-value=2.3e+02 Score=18.51 Aligned_cols=16 Identities=25% Similarity=0.399 Sum_probs=11.1
Q ss_pred cCCCCCCchhHHHHHH
Q 009296 109 LNSGPFNIKEHVLITI 124 (538)
Q Consensus 109 lNPGpF~~KEh~li~i 124 (538)
|+-||||+-|-....-
T Consensus 1 l~rg~WT~eED~~L~~ 16 (52)
T d1gvda_ 1 LIKGPWTKEEDQRLIK 16 (52)
T ss_dssp CCCCSCCHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHH
Confidence 4578888888766543
No 7
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=2.64 E-value=5.7e+02 Score=14.66 Aligned_cols=20 Identities=30% Similarity=0.487 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 009296 364 MTYGLGFATLSATLVHIFLF 383 (538)
Q Consensus 364 ~~~~~~fa~~~a~i~~~~l~ 383 (538)
+.|..-|||+-+.+.+++.+
T Consensus 4 i~yv~ifac~i~lfffaiff 23 (30)
T d2axtt1 4 ITYVFIFACIIALFFFAIFF 23 (30)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred eehHHHHHHHHHHHHHHHHh
Confidence 46777888888877776555
No 8
>d1x3ha2 g.39.1.3 (A:43-74) Leupaxin {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.62 E-value=2.7e+02 Score=16.91 Aligned_cols=16 Identities=13% Similarity=0.416 Sum_probs=12.2
Q ss_pred CCCCcccccccCCcee
Q 009296 318 FPIYSKDLFKSNGEDY 333 (538)
Q Consensus 318 ~P~~S~~~fd~~G~~Y 333 (538)
-||.+.+-|.-+|++|
T Consensus 7 ~PF~~~~Fy~~~g~Py 22 (32)
T d1x3ha2 7 TSFSTGSFFELDGRPF 22 (32)
T ss_dssp CBSCSSCCEESSSCEE
T ss_pred CcCCCCCeEeECCccc
Confidence 4777777788888776
No 9
>d2ivxa1 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.53 E-value=3.5e+02 Score=20.74 Aligned_cols=26 Identities=8% Similarity=0.339 Sum_probs=19.8
Q ss_pred HHHHHhhhhhhhhhcCCChHHHHHHhhh
Q 009296 508 QGLTFLADFKLGHYMKIPPRAMFMVRLW 535 (538)
Q Consensus 508 qa~~~~~DlKlGhY~kiPPR~~F~~Qi~ 535 (538)
++.+++.| +|..+|+|++....|+.+
T Consensus 33 ~~~~~i~~--~~~~l~l~~~t~~~A~~l 58 (143)
T d2ivxa1 33 QAANLIQE--MGQRLNVSQLTINTAIVY 58 (143)
T ss_dssp HHHHHHHH--HHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHH--HHHHcCCCHHHHHHHHHH
Confidence 45566655 789999999998888754
No 10
>d1lghb_ f.3.1.1 (B:) Light-harvesting complex subunits {Rhodospirillum molischianum [TaxId: 1083]}
Probab=2.46 E-value=5.9e+02 Score=16.28 Aligned_cols=14 Identities=14% Similarity=0.389 Sum_probs=10.7
Q ss_pred HHHHHHHHHhhchh
Q 009296 374 SATLVHIFLFSGRD 387 (538)
Q Consensus 374 ~a~i~~~~l~~~~~ 387 (538)
.|++.|++.|-||.
T Consensus 28 iAvvAHiLvw~wrP 41 (43)
T d1lghb_ 28 LAAVAHVLVWVWKP 41 (43)
T ss_dssp HHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHhcC
Confidence 46788999887764
Done!