BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009297
(538 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VTE|A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase
From Cannabis Sativa
Length = 518
Score = 457 bits (1175), Expect = e-129, Method: Compositional matrix adjust.
Identities = 239/519 (46%), Positives = 344/519 (66%), Gaps = 14/519 (2%)
Query: 28 NSHESFHQCLLNNSPPSHPIFQAIHTPQNSSYSSVLQSYIRNLRFNTSSTPKPVLIVAAM 87
N E+F +C + P + + ++T + Y S+L S I+NLRF + +TPKP++IV
Sbjct: 2 NPRENFLKCFSKHIPNNVANPKLVYTQHDQLYMSILNSTIQNLRFISDTTPKPLVIVTPS 61
Query: 88 HESHVQAAIICAKKHNLQMKIRSGGHDYEGLSYVSNVPFFILDMFNLRSIDVDIESETAW 147
+ SH+QA I+C+KK LQ++ RSGGHD EG+SY+S VPF ++D+ N+ SI +D+ S+TAW
Sbjct: 62 NNSHIQATILCSKKVGLQIRTRSGGHDAEGMSYISQVPFVVVDLRNMHSIKIDVHSQTAW 121
Query: 148 VQAGAILGEVFYRIAEKSKTHGFPAGVCPTVGVGGHFSAGGYGNMMRKYGLSVDNIVDAK 207
V+AGA LGEV+Y I EK++ FP G CPTVGVGGHFS GGYG +MR YGL+ DNI+DA
Sbjct: 122 VEAGATLGEVYYWINEKNENLSFPGGYCPTVGVGGHFSGGGYGALMRNYGLAADNIIDAH 181
Query: 208 LVDVNGRILDRNSMGEDLFWAIRGGGA-SFGVVLAYKINLVPVPETVTVFKVEKTLE-QD 265
LV+V+G++LDR SMGEDLFWAIRGGG +FG++ A+KI LV VP T+F V+K +E
Sbjct: 182 LVNVDGKVLDRKSMGEDLFWAIRGGGGENFGIIAAWKIKLVAVPSKSTIFSVKKNMEIHG 241
Query: 266 ATDAVDKWQHVAHKLDDGLFIRLVLDVVNSSTRTGER--TVRATFIALFLGGSERLLSIT 323
+KWQ++A+K D L + N + G+ TV F ++F GG + L+ +
Sbjct: 242 LVKLFNKWQNIAYKYDKDLVLMTHFITKNITDNHGKNKTTVHGYFSSIFHGGVDSLVDLM 301
Query: 324 DKGFPELGLTRSDCTELSWIDSVVYWGSF----PAGTPASVLLDRTPLTLSSLKRKSDYV 379
+K FPELG+ ++DC E SWID+ +++ A +LLDR+ ++ K DYV
Sbjct: 302 NKSFPELGIKKTDCKEFSWIDTTIFYSGVVNFNTANFKKEILLDRSAGKKTAFSIKLDYV 361
Query: 380 TEPIPREGLEGLWKKMIELERP---YMNFNPYGGKMHEIPATASPFPHRDGNLWKIQYVT 436
+PIP + + +K+ E + Y+ + PYGG M EI +A PFPHR G ++++ Y
Sbjct: 362 KKPIPETAMVKILEKLYEEDVGAGMYVLY-PYGGIMEEISESAIPFPHRAGIMYELWYTA 420
Query: 437 NWNEEGVDAANYYIDLTRQLYDYLTPFVSKNPRQSFLAYRDLDLGTNNHKFETGYSEGRA 496
+W ++ + +I+ R +Y++ TP+VS+NPR ++L YRDLDLG NH Y++ R
Sbjct: 421 SWEKQ--EDNEKHINWVRSVYNFTTPYVSQNPRLAYLNYRDLDLGKTNHASPNNYTQARI 478
Query: 497 YGINYFLENFDRLVEIKTKVDPDNFFRNEQSIPVLPPLH 535
+G YF +NF+RLV++KTKVDP+NFFRNEQSIP LPP H
Sbjct: 479 WGEKYFGKNFNRLVKVKTKVDPNNFFRNEQSIPPLPPHH 517
>pdb|4DNS|A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60
Provides Insight Into The Various Cross-Allergenicity Of
The Pollen Group 4 Allergens
pdb|4DNS|B Chain B, Crystal Structure Of Bermuda Grass Isoallergen Bg60
Provides Insight Into The Various Cross-Allergenicity Of
The Pollen Group 4 Allergens
Length = 497
Score = 427 bits (1099), Expect = e-120, Method: Compositional matrix adjust.
Identities = 230/506 (45%), Positives = 328/506 (64%), Gaps = 23/506 (4%)
Query: 30 HESFHQCLLNNSPPSHPIFQAIHTPQNSSYSSVLQSYIRNLRFNTSSTPKPVLIVAAMHE 89
F CL + PP ++ + +Y+SV S +RN++F + T KP+ I+ +
Sbjct: 10 ERDFLTCLTKDIPPRQ-----LYAKSSPAYASVWSSTVRNIKFLSDKTVKPLYIITPTNA 64
Query: 90 SHVQAAIICAKKHNLQMKIRSGGHDYEGLSYVSNVP--FFILDMFNLRSIDVDIESETAW 147
SH+QAA++C ++H +++++RSGGHDYEGLSY S P F ++DM +R++ +D ++ TAW
Sbjct: 65 SHIQAAVVCGRRHGMRIRVRSGGHDYEGLSYRSEKPEPFAVVDMNKMRAVSIDGKAATAW 124
Query: 148 VQAGAILGEVFYRIAEKSKTHGFPAGVCPTVGVGGHFSAGGYGNMMRKYGLSVDNIVDAK 207
V +GA LG+++Y IA+ S GFPAGVC T+GVGGHFS GG+G ++RKYG + DN++DAK
Sbjct: 125 VDSGAQLGDLYYGIAKASPKLGFPAGVCTTIGVGGHFSGGGFGMLLRKYGTAADNVIDAK 184
Query: 208 LVDVNGRILDRNSMGEDLFWAIRGGGA-SFGVVLAYKINLVPVPETVTVFKVEKTLEQDA 266
+VD GR+LDR +MGED FWAIRGGG SFG+V ++++ L+PVP VTVF+V K +++ A
Sbjct: 185 VVDAQGRLLDRKAMGEDHFWAIRGGGGESFGIVASWQVKLLPVPPKVTVFQVHKGIKEGA 244
Query: 267 TDAVDKWQHVAHKLDDGLFIRLVLDVVNSSTRTGERTVRATFIALFLGGSERLLSITDKG 326
D V KWQ VA L D L IR++ G+ A F AL+LG + L+ +
Sbjct: 245 IDLVTKWQTVAPALPDDLMIRIMA--------MGQ---GAMFEALYLGTCKDLVLLMTAR 293
Query: 327 FPELGLTRSDCTELSWIDSVVYWGSFPAGTPASVLLDRTPLTLSSLKRKSDYVTEPIPRE 386
FPELG+ + C E++WI+SV Y P GT LL+RT + K KSDYV EPIP+
Sbjct: 294 FPELGMNATHCKEMTWIESVPYIPMGPKGT-VRDLLNRTSNIKAFGKYKSDYVLEPIPKS 352
Query: 387 GLEGLWKKMIELERPYMNFNPYGGKMHEIPATASPFPHRDGNLWKIQYVTNWNEEGVDAA 446
E ++ +++ M +PYGG + +P +A+PFP R G L+ IQYV W EG AA
Sbjct: 353 DWEKIFTWLVKPGAGVMIMDPYGGGIASVPESATPFPRRSGVLFNIQYVVYWFGEG--AA 410
Query: 447 NYYIDLTRQLYDYLTPFVSKNPRQSFLAYRDLDLGTNNHKFE-TGYSEGRAYGINYFLEN 505
TR +YD++TP+VSKNPRQ+++ YRDLDLG N + Y+ G+ +G YF N
Sbjct: 411 ALPTQWTRDIYDFMTPYVSKNPRQAYVNYRDLDLGVNQVVGNVSTYASGKVWGEKYFKGN 470
Query: 506 FDRLVEIKTKVDPDNFFRNEQSIPVL 531
F+RL K K+DP+++FRNEQSIP L
Sbjct: 471 FERLARTKGKIDPEDYFRNEQSIPPL 496
>pdb|3TSH|A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With
Glucose Dehydrogenase Activity
pdb|3TSJ|A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With
Glucose Dehydrogenase Activity
pdb|3TSJ|B Chain B, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With
Glucose Dehydrogenase Activity
Length = 500
Score = 401 bits (1031), Expect = e-112, Method: Compositional matrix adjust.
Identities = 216/512 (42%), Positives = 326/512 (63%), Gaps = 31/512 (6%)
Query: 29 SHESFHQCLLNNSPPSHPIFQAIHTPQNSSYSSVLQSYIRNLRFNTSSTPKPVLIVAAMH 88
+ E F CL+ PP + ++ + +Y SVL IRN R+++ KP+ I+
Sbjct: 7 AKEDFLGCLVKEIPP-----RLLYAKSSPAYPSVLGQTIRNSRWSSPDNVKPLYIITPTQ 61
Query: 89 ESHVQAAIICAKKHNLQMKIRSGGHDYEGLSYVSNVP--FFILDMFNLRSIDVDIESETA 146
SH+Q+A++C ++H++++++RSGGHDYEGLSY S P F ++D+ +R++ VD ++ TA
Sbjct: 62 VSHIQSAVVCGRRHSVRIRVRSGGHDYEGLSYRSLQPETFAVVDLNKMRAVWVDGKARTA 121
Query: 147 WVQAGAILGEVFYRIAEKSKTHGFPAGVCPTVGVGGHFSAGGYGNMMRKYGLSVDNIVDA 206
WV +GA LGE++Y I + S T FPAGVCPT+GVGG+F+ GG+G ++RKYG++ +N++D
Sbjct: 122 WVDSGAQLGELYYAIYKASPTLAFPAGVCPTIGVGGNFAGGGFGMLLRKYGIAAENVIDV 181
Query: 207 KLVDVNGRILDRNSMGEDLFWAIRGGGA-SFGVVLAYKINLVPVPETVTVFKVEKTLEQD 265
KLVD NG++ D+ SMG+D FWA+RGGG SFG+V+A+++ L+PVP TVT+FK+ KT+ +
Sbjct: 182 KLVDANGKLHDKKSMGDDHFWAVRGGGGESFGIVVAWQVKLLPVPPTVTIFKISKTVSEG 241
Query: 266 ATDAVDKWQHVAHKLDDGLFIRLVLDVVNSSTRTGERTVRATFIALFLGGSERLLSITDK 325
A D ++KWQ VA +L L IR++ + +ATF A++LG + L +
Sbjct: 242 AVDIINKWQVVAPQLPADLMIRII-----------AQGPKATFEAMYLGTCKTLTPLMSS 290
Query: 326 GFPELGLTRSDCTELSWIDSVVYWGSFPAGTPASVLLDRTPLTLSSLKRKSDYVTEPIPR 385
FPELG+ S C E+SWI S+ + LL+R + KSDYV +P P+
Sbjct: 291 KFPELGMNPSHCNEMSWIQSIPFVHLGHRDALEDDLLNRQNSFKPFAEYKSDYVYQPFPK 350
Query: 386 EGLEGLWKKMIE--LERP---YMNFNPYGGKMHEIPATASPFPHRDGNLWKIQYVTNWNE 440
+W++++ L +P M F+PYG + P +A+PFPHR G L+ IQYV W
Sbjct: 351 T----VWEQILNTWLVKPGAGIMIFDPYGATISATPESATPFPHRKGVLFNIQYVNYWFA 406
Query: 441 EGVDAANYYIDLTRQLYDYLTPFVSKNPRQSFLAYRDLDLGTNNHKFE-TGYSEGRAYGI 499
G AA + ++ +Y+Y+ P+VSKNPRQ++ YRD+DLG N + + Y+ G+ +G
Sbjct: 407 PGAAAAP--LSWSKDIYNYMEPYVSKNPRQAYANYRDIDLGRNEVVNDVSTYASGKVWGQ 464
Query: 500 NYFLENFDRLVEIKTKVDPDNFFRNEQSIPVL 531
YF NF+RL K KVDP ++FRNEQSIP L
Sbjct: 465 KYFKGNFERLAITKGKVDPTDYFRNEQSIPPL 496
>pdb|3FW9|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With
(S)-Scoulerine
Length = 495
Score = 345 bits (886), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 202/502 (40%), Positives = 288/502 (57%), Gaps = 22/502 (4%)
Query: 36 CLLNNSPPSHPIFQAIHTPQNSSYSSVLQSYIRNLRFNTSSTPKPVLIVAAMHESHVQAA 95
CL N +H +F A +S ++ L I+N F S KP I+ + +
Sbjct: 5 CLTFNGVRNHTVFSA---DSDSDFNRFLHLSIQNPLFQNSLISKPSAIILPGSKEELSNT 61
Query: 96 IICAKKHNLQMKIRSGGHDYEGLSYVSNVPFFILDMFNLRSIDVDIESETAWVQAGAILG 155
I C +K + +++RSGGH YEGLSY S+ PF ++D+ NL + +D+ESETAWV++G+ LG
Sbjct: 62 IRCIRKGSWTIRLRSGGHSYEGLSYTSDTPFILIDLMNLNRVSIDLESETAWVESGSTLG 121
Query: 156 EVFYRIAEKSKTHGFPAGVCPTVGVGGHFSAGGYGNMMRKYGLSVDNIVDAKLVDVNGRI 215
E++Y I E S GF AG CPTVG GGH S GG+G M RKYGL+ DN+VDA L+D NG I
Sbjct: 122 ELYYAITESSSKLGFTAGWCPTVGTGGHISGGGFGMMSRKYGLAADNVVDAILIDANGAI 181
Query: 216 LDRNSMGEDLFWAIRGGGAS-FGVVLAYKINLVPVPETVTVFKVEKTLEQD-ATDAVDKW 273
LDR +MGED+FWAIRGGG +G + A+KI L+PVPE VTVF+V K + D AT + KW
Sbjct: 182 LDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEATSLLHKW 241
Query: 274 QHVAHKLDDGLFIRLVLDVVNSSTRTGERTVRATFIALFLGGSERLLSITDKGFPELGLT 333
Q VA +L++ L V+ + E+ V T + G S D FPELGL
Sbjct: 242 QFVAEELEED----FTLSVLGGAD---EKQVWLTMLGFHFGLKTVAKSTFDLLFPELGLV 294
Query: 334 RSDCTELSWIDSVVYWGSFPAGTPASVLLDRTPLTLS--SLKRKSDYVTEPIPREGLEGL 391
D E+SW +S Y AG L+ L + K K D EP+P + GL
Sbjct: 295 EEDYLEMSWGESFAY----LAGLETVSQLNNRFLKFDERAFKTKVDLTKEPLPSKAFYGL 350
Query: 392 WKKMIELERPYMNFNPYGGKMHEIPATASPFPHRDGNLWKIQYVTNWNEEGVDAANYYID 451
+++ + ++ N +GG+M +I + +PFPHR G ++Y+ WN+ ++D
Sbjct: 351 LERLSKEPNGFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQKKKTEFLD 410
Query: 452 LTRQLYDYLTPFVSKNPRQSFLAYRDLDLG----TNNHKFETGYSEGRAYGINYFLENFD 507
++Y+++ PFVSKNPR ++ + DLDLG N R++G +YFL N++
Sbjct: 411 WLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEISRSWGESYFLSNYE 470
Query: 508 RLVEIKTKVDPDNFFRNEQSIP 529
RL+ KT +DP+N F + QSIP
Sbjct: 471 RLIRAKTLIDPNNVFNHPQSIP 492
>pdb|3D2D|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With
(S)-Reticuline
pdb|3D2H|A Chain A, Structure Of Berberine Bridge Enzyme From Eschscholzia
Californica, Monoclinic Crystal Form
pdb|3D2J|A Chain A, Structure Of Berberine Bridge Enzyme From Eschscholzia
Californica, Tetragonal Crystal Form
Length = 538
Score = 345 bits (886), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 202/502 (40%), Positives = 288/502 (57%), Gaps = 22/502 (4%)
Query: 36 CLLNNSPPSHPIFQAIHTPQNSSYSSVLQSYIRNLRFNTSSTPKPVLIVAAMHESHVQAA 95
CL N +H +F A +S ++ L I+N F S KP I+ + +
Sbjct: 30 CLTFNGVRNHTVFSA---DSDSDFNRFLHLSIQNPLFQNSLISKPSAIILPGSKEELSNT 86
Query: 96 IICAKKHNLQMKIRSGGHDYEGLSYVSNVPFFILDMFNLRSIDVDIESETAWVQAGAILG 155
I C +K + +++RSGGH YEGLSY S+ PF ++D+ NL + +D+ESETAWV++G+ LG
Sbjct: 87 IRCIRKGSWTIRLRSGGHSYEGLSYTSDTPFILIDLMNLNRVSIDLESETAWVESGSTLG 146
Query: 156 EVFYRIAEKSKTHGFPAGVCPTVGVGGHFSAGGYGNMMRKYGLSVDNIVDAKLVDVNGRI 215
E++Y I E S GF AG CPTVG GGH S GG+G M RKYGL+ DN+VDA L+D NG I
Sbjct: 147 ELYYAITESSSKLGFTAGWCPTVGTGGHISGGGFGMMSRKYGLAADNVVDAILIDANGAI 206
Query: 216 LDRNSMGEDLFWAIRGGGAS-FGVVLAYKINLVPVPETVTVFKVEKTLEQD-ATDAVDKW 273
LDR +MGED+FWAIRGGG +G + A+KI L+PVPE VTVF+V K + D AT + KW
Sbjct: 207 LDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEATSLLHKW 266
Query: 274 QHVAHKLDDGLFIRLVLDVVNSSTRTGERTVRATFIALFLGGSERLLSITDKGFPELGLT 333
Q VA +L++ L V+ + E+ V T + G S D FPELGL
Sbjct: 267 QFVAEELEED----FTLSVLGGAD---EKQVWLTMLGFHFGLKTVAKSTFDLLFPELGLV 319
Query: 334 RSDCTELSWIDSVVYWGSFPAGTPASVLLDRTPLTLS--SLKRKSDYVTEPIPREGLEGL 391
D E+SW +S Y AG L+ L + K K D EP+P + GL
Sbjct: 320 EEDYLEMSWGESFAY----LAGLETVSQLNNRFLKFDERAFKTKVDLTKEPLPSKAFYGL 375
Query: 392 WKKMIELERPYMNFNPYGGKMHEIPATASPFPHRDGNLWKIQYVTNWNEEGVDAANYYID 451
+++ + ++ N +GG+M +I + +PFPHR G ++Y+ WN+ ++D
Sbjct: 376 LERLSKEPNGFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQKKKTEFLD 435
Query: 452 LTRQLYDYLTPFVSKNPRQSFLAYRDLDLG----TNNHKFETGYSEGRAYGINYFLENFD 507
++Y+++ PFVSKNPR ++ + DLDLG N R++G +YFL N++
Sbjct: 436 WLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEISRSWGESYFLSNYE 495
Query: 508 RLVEIKTKVDPDNFFRNEQSIP 529
RL+ KT +DP+N F + QSIP
Sbjct: 496 RLIRAKTLIDPNNVFNHPQSIP 517
>pdb|4EC3|A Chain A, Structure Of Berberine Bridge Enzyme, H174a Variant In
Complex With (S)-Reticuline
Length = 519
Score = 345 bits (885), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 201/502 (40%), Positives = 287/502 (57%), Gaps = 22/502 (4%)
Query: 36 CLLNNSPPSHPIFQAIHTPQNSSYSSVLQSYIRNLRFNTSSTPKPVLIVAAMHESHVQAA 95
CL N +H +F A +S ++ L I+N F S KP I+ + +
Sbjct: 11 CLTFNGVRNHTVFSA---DSDSDFNRFLHLSIQNPLFQNSLISKPSAIILPGSKEELSNT 67
Query: 96 IICAKKHNLQMKIRSGGHDYEGLSYVSNVPFFILDMFNLRSIDVDIESETAWVQAGAILG 155
I C +K + +++RSGGH YEGLSY S+ PF ++D+ NL + +D+ESETAWV++G+ LG
Sbjct: 68 IRCIRKGSWTIRLRSGGHSYEGLSYTSDTPFILIDLMNLNRVSIDLESETAWVESGSTLG 127
Query: 156 EVFYRIAEKSKTHGFPAGVCPTVGVGGHFSAGGYGNMMRKYGLSVDNIVDAKLVDVNGRI 215
E++Y I E S GF AG CPTVG GG S GG+G M RKYGL+ DN+VDA L+D NG I
Sbjct: 128 ELYYAITESSSKLGFTAGWCPTVGTGGAISGGGFGMMSRKYGLAADNVVDAILIDANGAI 187
Query: 216 LDRNSMGEDLFWAIRGGGAS-FGVVLAYKINLVPVPETVTVFKVEKTLEQD-ATDAVDKW 273
LDR +MGED+FWAIRGGG +G + A+KI L+PVPE VTVF+V K + D AT + KW
Sbjct: 188 LDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEATSLLHKW 247
Query: 274 QHVAHKLDDGLFIRLVLDVVNSSTRTGERTVRATFIALFLGGSERLLSITDKGFPELGLT 333
Q VA +L++ L V+ + E+ V T + G S D FPELGL
Sbjct: 248 QFVAEELEED----FTLSVLGGAD---EKQVWLTMLGFHFGLKTVAKSTFDLLFPELGLV 300
Query: 334 RSDCTELSWIDSVVYWGSFPAGTPASVLLDRTPLTLS--SLKRKSDYVTEPIPREGLEGL 391
D E+SW +S Y AG L+ L + K K D EP+P + GL
Sbjct: 301 EEDYLEMSWGESFAY----LAGLETVSQLNNRFLKFDERAFKTKVDLTKEPLPSKAFYGL 356
Query: 392 WKKMIELERPYMNFNPYGGKMHEIPATASPFPHRDGNLWKIQYVTNWNEEGVDAANYYID 451
+++ + ++ N +GG+M +I + +PFPHR G ++Y+ WN+ ++D
Sbjct: 357 LERLSKEPNGFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQKKKTEFLD 416
Query: 452 LTRQLYDYLTPFVSKNPRQSFLAYRDLDLG----TNNHKFETGYSEGRAYGINYFLENFD 507
++Y+++ PFVSKNPR ++ + DLDLG N R++G +YFL N++
Sbjct: 417 WLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEISRSWGESYFLSNYE 476
Query: 508 RLVEIKTKVDPDNFFRNEQSIP 529
RL+ KT +DP+N F + QSIP
Sbjct: 477 RLIRAKTLIDPNNVFNHPQSIP 498
>pdb|3GSY|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With
Dehydroscoulerine
Length = 519
Score = 345 bits (885), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 202/502 (40%), Positives = 288/502 (57%), Gaps = 22/502 (4%)
Query: 36 CLLNNSPPSHPIFQAIHTPQNSSYSSVLQSYIRNLRFNTSSTPKPVLIVAAMHESHVQAA 95
CL N +H +F A +S ++ L I+N F S KP I+ + +
Sbjct: 11 CLTFNGVRNHTVFSA---DSDSDFNRFLHLSIQNPLFQNSLISKPSAIILPGSKEELSNT 67
Query: 96 IICAKKHNLQMKIRSGGHDYEGLSYVSNVPFFILDMFNLRSIDVDIESETAWVQAGAILG 155
I C +K + +++RSGGH YEGLSY S+ PF ++D+ NL + +D+ESETAWV++G+ LG
Sbjct: 68 IRCIRKGSWTIRLRSGGHSYEGLSYTSDTPFILIDLMNLNRVSIDLESETAWVESGSTLG 127
Query: 156 EVFYRIAEKSKTHGFPAGVCPTVGVGGHFSAGGYGNMMRKYGLSVDNIVDAKLVDVNGRI 215
E++Y I E S GF AG CPTVG GGH S GG+G M RKYGL+ DN+VDA L+D NG I
Sbjct: 128 ELYYAITESSSKLGFTAGWCPTVGTGGHISGGGFGMMSRKYGLAADNVVDAILIDANGAI 187
Query: 216 LDRNSMGEDLFWAIRGGGAS-FGVVLAYKINLVPVPETVTVFKVEKTLEQD-ATDAVDKW 273
LDR +MGED+FWAIRGGG +G + A+KI L+PVPE VTVF+V K + D AT + KW
Sbjct: 188 LDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEATSLLHKW 247
Query: 274 QHVAHKLDDGLFIRLVLDVVNSSTRTGERTVRATFIALFLGGSERLLSITDKGFPELGLT 333
Q VA +L++ L V+ + E+ V T + G S D FPELGL
Sbjct: 248 QFVAEELEED----FTLSVLGGAD---EKQVWLTMLGFHFGLKTVAKSTFDLLFPELGLV 300
Query: 334 RSDCTELSWIDSVVYWGSFPAGTPASVLLDRTPLTLS--SLKRKSDYVTEPIPREGLEGL 391
D E+SW +S Y AG L+ L + K K D EP+P + GL
Sbjct: 301 EEDYLEMSWGESFAY----LAGLETVSQLNNRFLKFDERAFKTKVDLTKEPLPSKAFYGL 356
Query: 392 WKKMIELERPYMNFNPYGGKMHEIPATASPFPHRDGNLWKIQYVTNWNEEGVDAANYYID 451
+++ + ++ N +GG+M +I + +PFPHR G ++Y+ WN+ ++D
Sbjct: 357 LERLSKEPNGFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQKKKTEFLD 416
Query: 452 LTRQLYDYLTPFVSKNPRQSFLAYRDLDLG----TNNHKFETGYSEGRAYGINYFLENFD 507
++Y+++ PFVSKNPR ++ + DLDLG N R++G +YFL N++
Sbjct: 417 WLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEISRSWGESYFLSNYE 476
Query: 508 RLVEIKTKVDPDNFFRNEQSIP 529
RL+ KT +DP+N F + QSIP
Sbjct: 477 RLIRAKTLIDPNNVFNHPQSIP 498
>pdb|3FW7|A Chain A, Structure Of Berberine Bridge Enzyme, H104a Variant
Length = 498
Score = 342 bits (877), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 201/502 (40%), Positives = 287/502 (57%), Gaps = 22/502 (4%)
Query: 36 CLLNNSPPSHPIFQAIHTPQNSSYSSVLQSYIRNLRFNTSSTPKPVLIVAAMHESHVQAA 95
CL N +H +F A +S ++ L I+N F S KP I+ + +
Sbjct: 8 CLTFNGVRNHTVFSA---DSDSDFNRFLHLSIQNPLFQNSLISKPSAIILPGSKEELSNT 64
Query: 96 IICAKKHNLQMKIRSGGHDYEGLSYVSNVPFFILDMFNLRSIDVDIESETAWVQAGAILG 155
I C +K + +++RSGG YEGLSY S+ PF ++D+ NL + +D+ESETAWV++G+ LG
Sbjct: 65 IRCIRKGSWTIRLRSGGASYEGLSYTSDTPFILIDLMNLNRVSIDLESETAWVESGSTLG 124
Query: 156 EVFYRIAEKSKTHGFPAGVCPTVGVGGHFSAGGYGNMMRKYGLSVDNIVDAKLVDVNGRI 215
E++Y I E S GF AG CPTVG GGH S GG+G M RKYGL+ DN+VDA L+D NG I
Sbjct: 125 ELYYAITESSSKLGFTAGWCPTVGTGGHISGGGFGMMSRKYGLAADNVVDAILIDANGAI 184
Query: 216 LDRNSMGEDLFWAIRGGGAS-FGVVLAYKINLVPVPETVTVFKVEKTLEQD-ATDAVDKW 273
LDR +MGED+FWAIRGGG +G + A+KI L+PVPE VTVF+V K + D AT + KW
Sbjct: 185 LDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEATSLLHKW 244
Query: 274 QHVAHKLDDGLFIRLVLDVVNSSTRTGERTVRATFIALFLGGSERLLSITDKGFPELGLT 333
Q VA +L++ L V+ + E+ V T + G S D FPELGL
Sbjct: 245 QFVAEELEED----FTLSVLGGAD---EKQVWLTMLGFHFGLKTVAKSTFDLLFPELGLV 297
Query: 334 RSDCTELSWIDSVVYWGSFPAGTPASVLLDRTPLTLS--SLKRKSDYVTEPIPREGLEGL 391
D E+SW +S Y AG L+ L + K K D EP+P + GL
Sbjct: 298 EEDYLEMSWGESFAY----LAGLETVSQLNNRFLKFDERAFKTKVDLTKEPLPSKAFYGL 353
Query: 392 WKKMIELERPYMNFNPYGGKMHEIPATASPFPHRDGNLWKIQYVTNWNEEGVDAANYYID 451
+++ + ++ N +GG+M +I + +PFPHR G ++Y+ WN+ ++D
Sbjct: 354 LERLSKEPNGFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQKKKTEFLD 413
Query: 452 LTRQLYDYLTPFVSKNPRQSFLAYRDLDLG----TNNHKFETGYSEGRAYGINYFLENFD 507
++Y+++ PFVSKNPR ++ + DLDLG N R++G +YFL N++
Sbjct: 414 WLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEISRSWGESYFLSNYE 473
Query: 508 RLVEIKTKVDPDNFFRNEQSIP 529
RL+ KT +DP+N F + QSIP
Sbjct: 474 RLIRAKTLIDPNNVFNHPQSIP 495
>pdb|3FWA|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant In
Complex With (S)-Reticuline
Length = 497
Score = 342 bits (876), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 201/502 (40%), Positives = 287/502 (57%), Gaps = 22/502 (4%)
Query: 36 CLLNNSPPSHPIFQAIHTPQNSSYSSVLQSYIRNLRFNTSSTPKPVLIVAAMHESHVQAA 95
CL N +H +F A +S ++ L I+N F S KP I+ + +
Sbjct: 5 CLTFNGVRNHTVFSA---DSDSDFNRFLHLSIQNPLFQNSLISKPSAIILPGSKEELSNT 61
Query: 96 IICAKKHNLQMKIRSGGHDYEGLSYVSNVPFFILDMFNLRSIDVDIESETAWVQAGAILG 155
I C +K + +++RSGGH YEGLSY S+ PF ++D+ NL + +D+ESETAWV++G+ LG
Sbjct: 62 IRCIRKGSWTIRLRSGGHSYEGLSYTSDTPFILIDLMNLNRVSIDLESETAWVESGSTLG 121
Query: 156 EVFYRIAEKSKTHGFPAGVCPTVGVGGHFSAGGYGNMMRKYGLSVDNIVDAKLVDVNGRI 215
E++Y I E S GF AG PTVG GGH S GG+G M RKYGL+ DN+VDA L+D NG I
Sbjct: 122 ELYYAITESSSKLGFTAGWAPTVGTGGHISGGGFGMMSRKYGLAADNVVDAILIDANGAI 181
Query: 216 LDRNSMGEDLFWAIRGGGAS-FGVVLAYKINLVPVPETVTVFKVEKTLEQD-ATDAVDKW 273
LDR +MGED+FWAIRGGG +G + A+KI L+PVPE VTVF+V K + D AT + KW
Sbjct: 182 LDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEATSLLHKW 241
Query: 274 QHVAHKLDDGLFIRLVLDVVNSSTRTGERTVRATFIALFLGGSERLLSITDKGFPELGLT 333
Q VA +L++ L V+ + E+ V T + G S D FPELGL
Sbjct: 242 QFVAEELEED----FTLSVLGGAD---EKQVWLTMLGFHFGLKTVAKSTFDLLFPELGLV 294
Query: 334 RSDCTELSWIDSVVYWGSFPAGTPASVLLDRTPLTLS--SLKRKSDYVTEPIPREGLEGL 391
D E+SW +S Y AG L+ L + K K D EP+P + GL
Sbjct: 295 EEDYLEMSWGESFAY----LAGLETVSQLNNRFLKFDERAFKTKVDLTKEPLPSKAFYGL 350
Query: 392 WKKMIELERPYMNFNPYGGKMHEIPATASPFPHRDGNLWKIQYVTNWNEEGVDAANYYID 451
+++ + ++ N +GG+M +I + +PFPHR G ++Y+ WN+ ++D
Sbjct: 351 LERLSKEPNGFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQKKKTEFLD 410
Query: 452 LTRQLYDYLTPFVSKNPRQSFLAYRDLDLG----TNNHKFETGYSEGRAYGINYFLENFD 507
++Y+++ PFVSKNPR ++ + DLDLG N R++G +YFL N++
Sbjct: 411 WLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEISRSWGESYFLSNYE 470
Query: 508 RLVEIKTKVDPDNFFRNEQSIP 529
RL+ KT +DP+N F + QSIP
Sbjct: 471 RLIRAKTLIDPNNVFNHPQSIP 492
>pdb|3FW8|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant
Length = 495
Score = 342 bits (876), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 201/502 (40%), Positives = 287/502 (57%), Gaps = 22/502 (4%)
Query: 36 CLLNNSPPSHPIFQAIHTPQNSSYSSVLQSYIRNLRFNTSSTPKPVLIVAAMHESHVQAA 95
CL N +H +F A +S ++ L I+N F S KP I+ + +
Sbjct: 5 CLTFNGVRNHTVFSA---DSDSDFNRFLHLSIQNPLFQNSLISKPSAIILPGSKEELSNT 61
Query: 96 IICAKKHNLQMKIRSGGHDYEGLSYVSNVPFFILDMFNLRSIDVDIESETAWVQAGAILG 155
I C +K + +++RSGGH YEGLSY S+ PF ++D+ NL + +D+ESETAWV++G+ LG
Sbjct: 62 IRCIRKGSWTIRLRSGGHSYEGLSYTSDTPFILIDLMNLNRVSIDLESETAWVESGSTLG 121
Query: 156 EVFYRIAEKSKTHGFPAGVCPTVGVGGHFSAGGYGNMMRKYGLSVDNIVDAKLVDVNGRI 215
E++Y I E S GF AG PTVG GGH S GG+G M RKYGL+ DN+VDA L+D NG I
Sbjct: 122 ELYYAITESSSKLGFTAGWAPTVGTGGHISGGGFGMMSRKYGLAADNVVDAILIDANGAI 181
Query: 216 LDRNSMGEDLFWAIRGGGAS-FGVVLAYKINLVPVPETVTVFKVEKTLEQD-ATDAVDKW 273
LDR +MGED+FWAIRGGG +G + A+KI L+PVPE VTVF+V K + D AT + KW
Sbjct: 182 LDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEATSLLHKW 241
Query: 274 QHVAHKLDDGLFIRLVLDVVNSSTRTGERTVRATFIALFLGGSERLLSITDKGFPELGLT 333
Q VA +L++ L V+ + E+ V T + G S D FPELGL
Sbjct: 242 QFVAEELEED----FTLSVLGGAD---EKQVWLTMLGFHFGLKTVAKSTFDLLFPELGLV 294
Query: 334 RSDCTELSWIDSVVYWGSFPAGTPASVLLDRTPLTLS--SLKRKSDYVTEPIPREGLEGL 391
D E+SW +S Y AG L+ L + K K D EP+P + GL
Sbjct: 295 EEDYLEMSWGESFAY----LAGLETVSQLNNRFLKFDERAFKTKVDLTKEPLPSKAFYGL 350
Query: 392 WKKMIELERPYMNFNPYGGKMHEIPATASPFPHRDGNLWKIQYVTNWNEEGVDAANYYID 451
+++ + ++ N +GG+M +I + +PFPHR G ++Y+ WN+ ++D
Sbjct: 351 LERLSKEPNGFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQKKKTEFLD 410
Query: 452 LTRQLYDYLTPFVSKNPRQSFLAYRDLDLG----TNNHKFETGYSEGRAYGINYFLENFD 507
++Y+++ PFVSKNPR ++ + DLDLG N R++G +YFL N++
Sbjct: 411 WLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEISRSWGESYFLSNYE 470
Query: 508 RLVEIKTKVDPDNFFRNEQSIP 529
RL+ KT +DP+N F + QSIP
Sbjct: 471 RLIRAKTLIDPNNVFNHPQSIP 492
>pdb|3RJ8|A Chain A, Crystal Structure Of Carbohydrate Oxidase From
Microdochium Nivale
pdb|3RJA|A Chain A, Crystal Structure Of Carbohydrate Oxidase From
Microdochium Nivale In Complex With Substrate Analogue
Length = 473
Score = 114 bits (284), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 128/483 (26%), Positives = 213/483 (44%), Gaps = 68/483 (14%)
Query: 72 FNTSSTPKPVLIVAAMHESHVQAAIICAKKHNLQMKIRSGGHDYEGLSYVSNVPFFILDM 131
FN P I +H+Q+A+ CAKK NL++ +SGGH Y + ++ +
Sbjct: 29 FNIRLPYIPTAIAQTQTTAHIQSAVQCAKKLNLKVSAKSGGHSYASFGFGGENGHLMVQL 88
Query: 132 FNLRSIDV---DIESETAWVQAGAILGEVFYRIAEKSKTHGFPAGVCPTVGVGGHFSAGG 188
R IDV + ++ A V+ GA LG + + +K G CP VG+ GHF+ GG
Sbjct: 89 --DRMIDVISYNDKTGIAHVEPGARLGHLATVLNDKYG-RAISHGTCPGVGISGHFAHGG 145
Query: 189 YGNMMRKYGLSVDNIVDAKLVDVNGRILDRNSM-GEDLFWAIRGGGASFGVVLAYKINLV 247
+G +GL+VD++V +V +GRI++ ++ DLFW I+G G++FG+V +K+
Sbjct: 146 FGFSSHMHGLAVDSVVGVTVVLADGRIVEASATENADLFWGIKGAGSNFGIVAVWKLATF 205
Query: 248 PVPETVTVFKV-----EKTLEQDATDAVDKWQH-VAHKLDDGLFIRLVLDVVNSSTRTGE 301
P P+ +T F V KT +AV+ + VA + + R G+
Sbjct: 206 PAPKVLTRFGVTLNWKNKTSALKGIEAVEDYARWVAPR--------------EVNFRIGD 251
Query: 302 RTVRATFI-ALFLGGSERLLSITDKGFPEL--GLTRSDCTELSWIDSVVYWGSFPAG--- 355
I L+ G E+ + L G + T L+WI+SV+ + +F
Sbjct: 252 YGAGNPGIEGLYYGTPEQWRAAFQPLLDTLPAGYVVNPTTSLNWIESVLSYSNFDHVDFI 311
Query: 356 TPASVL-LDRTPLTLSSLKRKS-----DYVTEPIPREGLEGLWKKMIELERPYMNFNPYG 409
TP V LTL S+K + DY + + + + W + + +G
Sbjct: 312 TPQPVENFYAKSLTLKSIKGDAVKNFVDYYFD-VSNKVKDRFW---------FYQLDVHG 361
Query: 410 GKMHEIPATA---SPFPHRDGNLWKIQYVTNWNEEGVDAANYYIDLTRQLYDYLTPFVSK 466
GK ++ + +PHRD LW IQ+ + D Y + + + D V+K
Sbjct: 362 GKNSQVTKVTNAETAYPHRD-KLWLIQFYDRY-----DNNQTYPETSFKFLDGWVNSVTK 415
Query: 467 N-PRQSFLAYRDLDLGTNNHKFETGYSEGRAYGINYFLENFDRLVEIKTKVDPDNFFRNE 525
P+ + Y + + + + Y+ YG EN RL ++K K DP + F
Sbjct: 416 ALPKSDWGMY----INYADPRMDRDYATKVYYG-----ENLARLQKLKAKFDPTDRFYYP 466
Query: 526 QSI 528
Q++
Sbjct: 467 QAV 469
>pdb|2BVF|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 3 (P1)
pdb|2BVF|B Chain B, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 3 (P1)
pdb|2BVG|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVG|B Chain B, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVG|C Chain C, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVG|D Chain D, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVH|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
pdb|2BVH|B Chain B, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
pdb|2BVH|C Chain C, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
pdb|2BVH|D Chain D, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
Length = 459
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 116/466 (24%), Positives = 189/466 (40%), Gaps = 65/466 (13%)
Query: 79 KPVLIVAAMHESHVQAAIICAKKHNLQMKIRSGGHDYEGLSYVSNVPFFILDMFNLRSID 138
+P LI + V ++ A + L++ +RSGGH+ G Y +N +LD+ + SI
Sbjct: 38 RPSLIARCLSAGDVAKSVRYACDNGLEISVRSGGHNPNG--YATNDGGIVLDLRLMNSIH 95
Query: 139 VDIESETAWVQAGAILGEVFYRIAEKSKTHGFPA--GVCPTVGVGGHFSAGGYGNMMRKY 196
+D A + G I G+ + +++ G A G+ P VG G GG G + KY
Sbjct: 96 IDTAGSRARIGGGVISGD----LVKEAAKFGLAAVTGMHPKVGFCGLALNGGVGFLTPKY 151
Query: 197 GLSVDNIVDAKLVDVNGRIL-DRNSMGEDLFWAIRGGGASFGVVLAYKINLVPVPET--- 252
GL+ DNI+ A LV G ++ + +LFWA+RG G +FGVV ++ L +P
Sbjct: 152 GLASDNILGATLVTATGDVIYCSDDERPELFWAVRGAGPNFGVVTEVEVQLYELPRKMLA 211
Query: 253 --VTVFKVEKTLEQDATDAVDKWQHVAHKLDDGLFIRLVLDVVNSSTRTGERTVRATFIA 310
+T L T +D +A + +F+ + R T
Sbjct: 212 GFITWAPSVSELAGLLTSLLDALNEMADHIYPSVFVGV----------DENRAPSVTVCV 261
Query: 311 LFLGGSERLLSITDKGFPE---LGLTRSDCTELSWIDSVVYW----GSFPAGTPASVLLD 363
LGG L I ++ LG T SD + D VV GSF G +++ +D
Sbjct: 262 GHLGG----LDIAERDIARLRGLGRTVSDSIAVRSYDEVVALNAEVGSFEDGM-SNLWID 316
Query: 364 RTPLTLSSLKRKSDYVTEPIPREGLEGLWKKMIELERPYMNF-NPYGGKMHEIPATASPF 422
R ++ R ++ + + + E ++LE M F NP +P
Sbjct: 317 REIAMPNA--RFAEAIAGNLDKFVSEPASGGSVKLEIEGMPFGNP----------KRTPA 364
Query: 423 PHRDGNLWKIQYVTNWNEEGVDAANYYIDLTRQLYDYLTPFVSKNPRQSFLAYRDLDLGT 482
HRD + + W+ + Y +L R+L L ++ + L
Sbjct: 365 RHRDA--MGVLALAEWS-GAAPGSEKYPELARELDAALL--------RAGVTTSGFGLLN 413
Query: 483 NNHKFETGYSEGRAYGINYFLENFDRLVEIKTKVDPDNFFRNEQSI 528
NN + Y E + RL +K + DP+N FR+ +I
Sbjct: 414 NNSEVTA-----EMVAEVYKPEVYSRLAAVKREYDPENRFRHNYNI 454
>pdb|2IPI|A Chain A, Crystal Structure Of Aclacinomycin Oxidoreductase
pdb|2IPI|B Chain B, Crystal Structure Of Aclacinomycin Oxidoreductase
pdb|2IPI|C Chain C, Crystal Structure Of Aclacinomycin Oxidoreductase
pdb|2IPI|D Chain D, Crystal Structure Of Aclacinomycin Oxidoreductase
Length = 521
Score = 68.9 bits (167), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 127/500 (25%), Positives = 207/500 (41%), Gaps = 65/500 (13%)
Query: 72 FNTSSTPKPVLIVAAMHESHVQAAIICAKKHNLQMKIRSGGHDYEGLSYVSNVPFFILDM 131
FN +P ++ V A+ A ++ +RSGGH +EG V ++DM
Sbjct: 48 FNGRFRGRPDVVYVVHTADQVVDAVNQAMAAGQRIAVRSGGHCFEGFVDDPAVRA-VIDM 106
Query: 132 FNLRSIDVDIESETAWVQAGAILGEVFYRIAEKSKTHGFPAGVCPTVGVGGHFSAGGYGN 191
+R + D V+ GA LGE YR PAGVCP VGVGGH GGYG
Sbjct: 107 SQMRQVFYDSGKRAFAVEPGATLGET-YRALYLDWGVTIPAGVCPQVGVGGHVLGGGYGP 165
Query: 192 MMRKYGLSVDNI--VDAKLVDVNGRI--LDRNSMGED----LFWA-IRGGGASFGVVLAY 242
+ R+ G+ D++ V+ +VD +GR + S +D L+WA GGG +FG+V Y
Sbjct: 166 LSRRDGVVADHLYAVEVVVVDASGRARKVVATSAADDPNRELWWAHTGGGGGNFGIVTRY 225
Query: 243 KINLVPV----PETVTVFKVEKTLEQDATDAVDKWQHVAHKLDDGLFIRLV-----LDVV 293
P + TL T W A L + F R++
Sbjct: 226 WFRTPGATGTDPSQLLPKAPTSTLRHIVT-----WDWSA--LTEEAFTRIIDNHGAWHQS 278
Query: 294 NSSTRTGERTVRATFIALFLGGSERLLSITDKGFPELGLTRSDCTELSWIDSVVYWGSFP 353
NS+ T ++ + F + LL I G GL ++ ++ +V +
Sbjct: 279 NSAAGTPYASMHSVFYLNSRAAGQILLDIQIDG----GLDGAEALLNDFVAAV----NEG 330
Query: 354 AGTPASVLLDRTPLTLSSL------------KRKSDYVTEPIPREGLEGLWKKMIELERP 401
G +V P ++L K K Y+ +P L++ + +
Sbjct: 331 TGVEPAVQRSTEPWLRATLANKFDTGGFDRTKSKGAYLRKPWTAAQAATLYRHLSADSQV 390
Query: 402 Y--MNFNPYGGKMHEIPATASPFPHRDGNLWKIQYVTNWNEEGVDAANYYIDLTRQLYDY 459
+ ++ YGGK++ +P TA+ RD + K+ W + D AN + R++Y
Sbjct: 391 WGEVSLYSYGGKVNSVPETATATAQRDSII-KVWMSATWMDPAHDDAN--LAWIREIYRE 447
Query: 460 L------TPFVSKNPRQSFLAYRDLDLGTNNHKFETGYSEGRAYGINYFLENFDRLVEIK 513
+ P +F+ Y D+DL + ++ T G + Y+ N+ RL ++K
Sbjct: 448 IFATTGGVPVPDDRTEGTFINYPDVDL--VDERWNT---SGVPWYTLYYKGNYPRLQKVK 502
Query: 514 TKVDPDNFFRNEQSIPVLPP 533
+ DP + FR+ ++ V PP
Sbjct: 503 ARWDPRDVFRH--ALSVRPP 520
>pdb|1ZR6|A Chain A, The Crystal Structure Of An Acremonium Strictum
Glucooligosaccharide Oxidase Reveals A Novel
Flavinylation
pdb|2AXR|A Chain A, Crystal Structure Of Glucooligosaccharide Oxidase From
Acremonium Strictum: A Novel Flavinylation Of
6-S-Cysteinyl, 8alpha-N1-Histidyl Fad
Length = 503
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/207 (29%), Positives = 95/207 (45%), Gaps = 11/207 (5%)
Query: 72 FNTSSTPKPVLIVAAMHESHVQAAIICAKKHNLQMKIRSGGHDYEGLSYVSNVPFFILDM 131
FN P I + AA+ C +Q+ + GGH Y + +L++
Sbjct: 35 FNLRVDYDPAAIAIPRSTEDIAAAVQCGLDAGVQISAKGGGHSYGSYGFGGEDGHLMLEL 94
Query: 132 FNLRSIDVDIESETAWVQAGAILGEVFYRIAEKSKTHGFPAGVCPTVGVGGHFSAGGYGN 191
+ + VD ++ A +Q GA LG + ++ G CP VGVGGH GGYG
Sbjct: 95 DRMYRVSVD-DNNVATIQGGARLGYTALELLDQGN-RALSHGTCPAVGVGGHVLGGGYGF 152
Query: 192 MMRKYGLSVDNIVDAKLVDVNGRILD-RNSMGEDLFWAIRGGGASFGVVLAYKINLVPVP 250
+GL++D ++ A +V + I+ + DLFWA+RGGG F +V ++ N P
Sbjct: 153 ATHTHGLTLDWLIGATVVLADASIVHVSETENADLFWALRGGGGGFAIVSEFEFNTFEAP 212
Query: 251 ETVTVFKVEKTLEQDATDAVDKWQHVA 277
E +T ++V T + QHVA
Sbjct: 213 EIITTYQVTTTWNRK--------QHVA 231
>pdb|3HSU|A Chain A, Functional Roles Of The 6-S-Cysteinyl, 8 Alpha-N1-Histidyl
Fad In Glucooligosaccharide Oxidase From Acremonium
Strictum
Length = 503
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/207 (28%), Positives = 94/207 (45%), Gaps = 11/207 (5%)
Query: 72 FNTSSTPKPVLIVAAMHESHVQAAIICAKKHNLQMKIRSGGHDYEGLSYVSNVPFFILDM 131
FN P I + AA+ C +Q+ + GGH Y + +L++
Sbjct: 35 FNLRVDYDPAAIAIPRSTEDIAAAVQCGLDAGVQISAKGGGHSYGSYGFGGEDGHLMLEL 94
Query: 132 FNLRSIDVDIESETAWVQAGAILGEVFYRIAEKSKTHGFPAGVCPTVGVGGHFSAGGYGN 191
+ + VD ++ A +Q GA LG + ++ G P VGVGGH GGYG
Sbjct: 95 DRMYRVSVD-DNNVATIQGGARLGYTALELLDQGN-RALSHGTAPAVGVGGHVLGGGYGF 152
Query: 192 MMRKYGLSVDNIVDAKLVDVNGRILD-RNSMGEDLFWAIRGGGASFGVVLAYKINLVPVP 250
+GL++D ++ A +V + I+ + DLFWA+RGGG F +V ++ N P
Sbjct: 153 ATHTHGLTLDWLIGATVVLADASIVHVSETENADLFWALRGGGGGFAIVSEFEFNTFEAP 212
Query: 251 ETVTVFKVEKTLEQDATDAVDKWQHVA 277
E +T ++V T + QHVA
Sbjct: 213 EIITTYQVTTTWNRK--------QHVA 231
>pdb|2WDW|A Chain A, The Native Crystal Structure Of The Primary Hexose Oxidase
( Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDW|B Chain B, The Native Crystal Structure Of The Primary Hexose Oxidase
( Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDX|A Chain A, The Complexed Crystal Structure Of The Primary Hexose
Oxidase (Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDX|B Chain B, The Complexed Crystal Structure Of The Primary Hexose
Oxidase (Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDX|C Chain C, The Complexed Crystal Structure Of The Primary Hexose
Oxidase (Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDX|D Chain D, The Complexed Crystal Structure Of The Primary Hexose
Oxidase (Dbv29) In Antibiotic A40926 Biosynthesis
Length = 523
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 137/527 (25%), Positives = 229/527 (43%), Gaps = 63/527 (11%)
Query: 35 QCLLNNSPPSHPIFQAIHTPQNSSYSSVLQSYIRNLRFNTSSTPKPVLIVAAMHESHVQA 94
+CL PP+ P+ TP + Y + L+ N RFN P + +V + + V
Sbjct: 25 RCL----PPAGPVKV---TPDDPRYLN-LKLRGANSRFN--GEPDYIHLVGSTQQ--VAD 72
Query: 95 AIICAKKHNLQMKIRSGGHDYEGLSYVSNVPF-FILDMFNLRSIDVDIESETAWVQAGAI 153
A+ + ++ +RSGGH +E +V N I+DM L I D ++ G
Sbjct: 73 AVEETVRTGKRVAVRSGGHCFE--DFVDNPDVKVIIDMSLLTEIAYDPSMNAFLIEPGNT 130
Query: 154 LGEVFYRIAEKSKTHGFPAGVCPTVGVGGHFSAGGYGNMMRKYGLSVDNIVDAKLVDVN- 212
L EV+ ++ P GVC VGVGGH GGYG + R++G VD + ++V VN
Sbjct: 131 LSEVYEKLYLGWNVT-IPGGVCGGVGVGGHICGGGYGPLSRQFGSVVDYLYAVEVVVVNK 189
Query: 213 ---GRIL----DRNSMGEDLFWA-IRGGGASFGVVLAYKINLVPVPETVTVFKVEKTLEQ 264
R++ +R+ DL+WA GGG +FGVV Y + VPE V +
Sbjct: 190 QGKARVIVATRERDDPHHDLWWAHTGGGGGNFGVVTKYWMR---VPEDVGRNPERLLPKP 246
Query: 265 DATDAVDKWQHVAHKLDDGLFIRLVLDVVNSSTR-TGERTVRATFIALFLGGSERLLSIT 323
AT + + F RL+ + R +G + + + G+E + +
Sbjct: 247 PATLLTSTVTFDWAGMTEAAFSRLLRNHGEWYERNSGPDSPYTGLWSQLMIGNE-VPGMG 305
Query: 324 DKGFP---ELGLTRSDCTEL--SWIDSVVYWGSFPAGTPASV---LLDRTPLTLS---SL 372
+ GF ++ TR D L + I++V+ G PA P + L TP +
Sbjct: 306 ESGFMMPIQVDATRPDARRLLDAHIEAVID-GVPPAEVPEPIEQRWLASTPGRGGRGPAS 364
Query: 373 KRKSDYVTEPIPREGLEGLWKKMIELERPYMNFNP-----YGGKMHEIPATASPFPHRDG 427
K K+ Y+ + + ++ +++ M ++ +++ YGGK++ + A+ P RD
Sbjct: 365 KTKAGYLRKRLTDRQIQAVYENMTHMDG--IDYGAVWLIGYGGKVNTVDPAATALPQRDA 422
Query: 428 NLWKIQYVTNWNEEGVDAANYYIDLTRQLYDYL------TPFVSKNPRQSFLAYRDLDLG 481
L K+ Y+T W G +A ++ R+LY + P + +++ Y D DL
Sbjct: 423 IL-KVNYITGWANPGNEAK--HLTWVRKLYADVYAETGGVPVPNDVSDGAYINYPDSDLA 479
Query: 482 TNNHKFETGYSEGRAYGINYFLENFDRLVEIKTKVDPDNFFRNEQSI 528
+ G + Y+ N RL ++K DP N F + SI
Sbjct: 480 DPGLN-----TSGVPWHDLYYKGNHPRLRKVKAAYDPRNHFHHALSI 521
>pdb|3PM9|A Chain A, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|B Chain B, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|C Chain C, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|D Chain D, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|E Chain E, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|F Chain F, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
Length = 476
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 56/122 (45%), Gaps = 6/122 (4%)
Query: 138 DVDIESETAWVQAGAILGEVFYRIAEKSKTHGFPAGVCPTVGVGGHFSAGGYGNMMRKYG 197
++D S T V+AGAIL V + AE + G + +GG+ S G YG
Sbjct: 110 EIDTSSNTITVEAGAILQRVQEKAAEVDRLFPLSLGAQGSCTIGGNLSTNAGGTAALAYG 169
Query: 198 LSVDNIVDAKLVDVNGRI------LDRNSMGEDLFWAIRGGGASFGVVLAYKINLVPVPE 251
L+ D + ++V +GR+ L +++ G DL G + G++ A + L P P
Sbjct: 170 LARDXALGVEVVLADGRVXNLLSKLKKDNTGYDLRDLFIGAEGTLGIITAATLKLFPKPR 229
Query: 252 TV 253
V
Sbjct: 230 AV 231
>pdb|2Y08|A Chain A, Structure Of The Substrate-Free Fad-Dependent Tirandamycin
Oxidase Taml
pdb|2Y08|B Chain B, Structure Of The Substrate-Free Fad-Dependent Tirandamycin
Oxidase Taml
pdb|2Y3R|A Chain A, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P21 Space Group
pdb|2Y3R|B Chain B, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P21 Space Group
pdb|2Y3R|C Chain C, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P21 Space Group
pdb|2Y3R|D Chain D, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P21 Space Group
pdb|2Y3S|A Chain A, Structure Of The Tirandamycine-Bound Fad-Dependent
Tirandamycin Oxidase Taml In C2 Space Group
pdb|2Y3S|B Chain B, Structure Of The Tirandamycine-Bound Fad-Dependent
Tirandamycin Oxidase Taml In C2 Space Group
pdb|2Y4G|A Chain A, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P212121 Space Group
pdb|2Y4G|B Chain B, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P212121 Space Group
Length = 530
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 60/131 (45%), Gaps = 14/131 (10%)
Query: 408 YGGKMHEIPATASPFPHRDGNLWKIQYVTNWNEEGVDAANYYIDLTRQLYDYL------T 461
YGGK++ +PA + RD L KI YVT W + D ++ R+LY +
Sbjct: 407 YGGKVNAVPADRTAVAQRDSIL-KIVYVTTWEDPAQDPV--HVRWIRELYRDVYADTGGV 463
Query: 462 PFVSKNPRQSFLAYRDLDLGTNNHKFETGYSEGRAYGINYFLENFDRLVEIKTKVDPDNF 521
P +++ Y D+DL E + G + Y+ + + RL +K + DP N
Sbjct: 464 PVPGGAADGAYVNYPDVDLAD-----EEWNTSGVPWSELYYKDAYPRLQAVKARWDPRNV 518
Query: 522 FRNEQSIPVLP 532
FR+ S+ V P
Sbjct: 519 FRHALSVRVPP 529
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/168 (32%), Positives = 83/168 (49%), Gaps = 14/168 (8%)
Query: 69 NLRFNTSSTPKPVLIVAAMHESHVQAAIICAKKHNLQMKIRSGGHDYEGLSYVSNVPFFI 128
NLRF P+ + +V + E ++ + A + ++ +RSGGH YE S+V +
Sbjct: 52 NLRF--VGDPEEIHLVGSAAE--IEQVLSRAVRSGKRVAVRSGGHCYEDFVANSDV-RVV 106
Query: 129 LDMFNLRSIDVDIESETAWVQAGAILGEVFYRIAEKSKTHGFPAGVCPTVGVGGHFSAGG 188
+DM L ++ D E V+AGA LG V Y+ + P G CP VG GGH GG
Sbjct: 107 MDMSRLSAVGFDEERGAFAVEAGATLGAV-YKTLFRVWGVTLPGGACPDVGAGGHILGGG 165
Query: 189 YGNMMRKYGLSVD--NIVDAKLVDVNG------RILDRNSMGEDLFWA 228
YG + R +G VD + V+ +VD +G + + DL+WA
Sbjct: 166 YGPLSRMHGSIVDYLHAVEVVVVDASGDARTVIATREPSDPNHDLWWA 213
>pdb|3POP|A Chain A, The Crystal Structure Of Gilr, An Oxidoreductase That
Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis
pdb|3POP|B Chain B, The Crystal Structure Of Gilr, An Oxidoreductase That
Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis
pdb|3POP|C Chain C, The Crystal Structure Of Gilr, An Oxidoreductase That
Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis
pdb|3POP|D Chain D, The Crystal Structure Of Gilr, An Oxidoreductase That
Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis
pdb|3PQB|A Chain A, The Crystal Structure Of Pregilvocarcin In Complex With
Gilr, An Oxidoreductase That Catalyzes The Terminal Step
Of Gilvocarcin Biosynthesis
pdb|3PQB|B Chain B, The Crystal Structure Of Pregilvocarcin In Complex With
Gilr, An Oxidoreductase That Catalyzes The Terminal Step
Of Gilvocarcin Biosynthesis
pdb|3PQB|C Chain C, The Crystal Structure Of Pregilvocarcin In Complex With
Gilr, An Oxidoreductase That Catalyzes The Terminal Step
Of Gilvocarcin Biosynthesis
pdb|3PQB|D Chain D, The Crystal Structure Of Pregilvocarcin In Complex With
Gilr, An Oxidoreductase That Catalyzes The Terminal Step
Of Gilvocarcin Biosynthesis
Length = 501
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 123/492 (25%), Positives = 189/492 (38%), Gaps = 94/492 (19%)
Query: 92 VQAAIICAKKHNLQMKIRSGGH---DYEGLSYVSNVPFFILDMFNLRSIDVDIESETAWV 148
V A++ A + RSGGH D+ G +LD+ NL +I + V
Sbjct: 47 VVASLQKAVTEGRGVACRSGGHCGQDFVGTPRRD----LVLDLHNLHAIGPAADGAGVRV 102
Query: 149 QAGAILGEVFYRIAEKSKTHGFPAGVCPTVGVGGHFSAGGYGNMMRKYGLSVDNI--VDA 206
+GA + +V + + P G C VG+GG + GGYG + R+ GL VD++ V+
Sbjct: 103 GSGATVDQVQKALFRRWNA-ALPLGACSAVGMGGLVAGGGYGPLSRQLGLVVDHLHAVEV 161
Query: 207 KLVD-------VNGRILDRNSMGEDLFWA-IRGGGASFGVVLAYKINL--------VPVP 250
+VD V R D +GE LFWA GGG +FGVV AY+ V +P
Sbjct: 162 AVVDESRTVRLVTARADDTGDLGE-LFWAHTGGGGGNFGVVTAYEFRSPEHLATEPVGLP 220
Query: 251 ETVTVFKVEKTL----EQDATDAVD------KWQHVAHKL----DDGLFIRLVLDVVNSS 296
V+K + D T V +W H H + LF ++ V+S
Sbjct: 221 RAAGRLHVQKVVFPWAMIDETSFVTVMRRFFEW-HERHSEPGSPESSLFATFFVNHVSSG 279
Query: 297 TRT----------GERTVRATFIALFLGGSERLLSITDKGFPELGLTRSDCTELSWIDSV 346
E + A F+A G+ + G P G+ +SW+
Sbjct: 280 VLQLMVQQDADVDPEGEILARFVASLTEGTGVV------GIPRGGV-------MSWLTGT 326
Query: 347 VYWGSFPAGTPASVLLDRTPLTLSSLKRKSDYVTEPIPREGLEGLWKKMIELERP----Y 402
Y G V+ R+ KS Y E L L + + + P Y
Sbjct: 327 RYMSQADCG---DVMGARS-------ASKSAYHRAAPTDEQLSVL-HRHLHADHPGQASY 375
Query: 403 MNFNPYGGKMHEIPATASPFPHRDGNLWKIQYVTNWNEEGVDAANYYIDLTRQLYDYL-- 460
+ FN YGG+++ + + P RD ++ K + + W + +D ++ R LY+
Sbjct: 376 VMFNSYGGEINRRGPSDAAVPQRD-SVVKSSWFSAWQDAELD--ELHLGWLRGLYEEFFA 432
Query: 461 ----TPFVSKNPRQSFLAYRDLDLGTNNHKFETGYSEGRAYGINYFLENFDRLVEIKTKV 516
P ++ Y D DL G + Y+ +N+ RL K
Sbjct: 433 GTGGVPVTGGRTDGCYINYPDADLLDPARN-----RSGEPWHHLYYKDNYARLRSAKRAW 487
Query: 517 DPDNFFRNEQSI 528
DP N F + SI
Sbjct: 488 DPLNTFHHSMSI 499
>pdb|2EXR|A Chain A, X-Ray Structure Of Cytokinin OxidaseDEHYDROGENASE (CKX)
FROM Arabidopsis Thaliana At5g21482
pdb|2Q4W|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Cytokinin OxidaseDEHYDROGENASE (CKX) FROM ARABIDOPSIS
THALIANA AT5G21482
Length = 524
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/209 (22%), Positives = 84/209 (40%), Gaps = 17/209 (8%)
Query: 72 FNTSSTPKPVLIVAAMHESHVQAAIICA-KKHNLQMKIRSGGHDYEGLS-----YVSNVP 125
F + KP+ +V + + A+ A + L + R GH G + V +
Sbjct: 54 FGGXNCVKPLAVVRPVGPEDIAGAVKAALRSDKLTVAARGNGHSINGQAXAEGGLVVDXS 113
Query: 126 FFILDMFNLRSIDVDIESETAWVQAGAILGEVFYRIAEKSKTHGF-PAGVCPTVG--VGG 182
+ F + + + V GA+ +V R + +G P +G VGG
Sbjct: 114 TTAENHFEVGYLSGGDATAFVDVSGGALWEDVLKRCVSE---YGLAPRSWTDYLGLTVGG 170
Query: 183 HFSAGGYGNMMRKYGLSVDNIVDAKLVDVNGRILDRNSM-GEDLFWAIRGGGASFGVVLA 241
S G +YG N+ + +V NG ++ + + +LF+++ GG FG++
Sbjct: 171 TLSNAGVSGQAFRYGPQTSNVTELDVVTGNGDVVTCSEIENSELFFSVLGGLGQFGIITR 230
Query: 242 YKINLVPVPETVTVFKVEKT----LEQDA 266
++ L P P+ V +V T QDA
Sbjct: 231 ARVLLQPAPDXVRWIRVVYTEFDEFTQDA 259
>pdb|4FDN|A Chain A, Mycobacterium Tuberculosis Dpre1 In Complex With Ct325 -
Hexagonal Crystal Form
pdb|4FDO|A Chain A, Mycobacterium Tuberculosis Dpre1 In Complex With Ct319
pdb|4FDP|A Chain A, Mycobacterium Tuberculosis Dpre1 - Monoclinic Crystal Form
pdb|4FDP|B Chain B, Mycobacterium Tuberculosis Dpre1 - Monoclinic Crystal Form
pdb|4FEH|A Chain A, Mycobacterium Tuberculosis Dpre1 - Hexagonal Crystal Form
pdb|4FF6|A Chain A, Mycobacterium Tuberculosis Dpre1 In Complex With Ct325 -
Monoclinic Crystal Form
pdb|4FF6|B Chain B, Mycobacterium Tuberculosis Dpre1 In Complex With Ct325 -
Monoclinic Crystal Form
Length = 481
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 67/160 (41%), Gaps = 30/160 (18%)
Query: 127 FILDMFNLRSI-DVDIESETAWVQAGAILGEVFYRIAEKSKTHGFPAGVCP---TVGVGG 182
++DM L +I +D +++ + AG L ++ + + G V P V VGG
Sbjct: 90 LVIDMTPLNTIHSIDADTKLVDIDAGVNLDQLM----KAALPFGLWVPVLPGTRQVTVGG 145
Query: 183 ----------HFSAGGYGNMMRKYGLSVDNIVDAKLVDVNGRILDRNSMGED--LFWAIR 230
H SAG +GN +R S+D L+ +G I GED LFWA
Sbjct: 146 AIACDIHGKNHHSAGSFGNHVR----SMD------LLTADGEIRHLTPTGEDAELFWATV 195
Query: 231 GGGASFGVVLAYKINLVPVPETVTVFKVEKTLEQDATDAV 270
GG G+++ I + P + + T D T A+
Sbjct: 196 GGNGLTGIIMRATIEMTPTSTAYFIADGDVTASLDETIAL 235
>pdb|4G3T|A Chain A, Mycobacterium Smegmatis Dpre1 - Hexagonal Crystal Form
pdb|4G3U|A Chain A, Mycobacterium Smegmatis Dpre1 - Monoclinic Crystal Form
pdb|4G3U|B Chain B, Mycobacterium Smegmatis Dpre1 - Monoclinic Crystal Form
Length = 403
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 61/158 (38%), Gaps = 28/158 (17%)
Query: 127 FILDMFNLRSIDVDIESETAWVQAGAILGEVFYRIAEKSKTHGFPAGVCP---TVGVGG- 182
++DM L I I+S T V A G ++ + + HG V P V VGG
Sbjct: 12 LVIDMPALNRIH-SIDSGTRLVDVDA--GVSLDQLMKAALPHGLWVPVLPGTRQVTVGGA 68
Query: 183 ---------HFSAGGYGNMMRKYGLSVDNIVDAKLVDVNGRILDRNSMG--EDLFWAIRG 231
H SAG +GN +R +L+ NG + G DLFWA G
Sbjct: 69 IGCDIHGKNHHSAGSFGNHVRSM----------ELLTANGEVRHLTPAGPDSDLFWATVG 118
Query: 232 GGASFGVVLAYKINLVPVPETVTVFKVEKTLEQDATDA 269
G G++L I + P + + T D T A
Sbjct: 119 GNGLTGIILRATIEMTPTETAYFIADGDVTGSLDETIA 156
>pdb|4AUT|A Chain A, Crystal Structure Of The Tuberculosis Drug Target
Decaprenyl-Phosphoryl-Beta-D-Ribofuranose-2-
Oxidoreductase (Dpre1) From Mycobacterium Smegmatis
pdb|4F4Q|A Chain A, Crystal Structure Of M. Smegmatis Dpre1 In Complex With
Fad And Covalently Bound Btz043
Length = 468
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 73/196 (37%), Gaps = 30/196 (15%)
Query: 89 ESHVQAAIICAKKHNLQMKIRSGGHDYEGLSYVSNVPFFILDMFNLRSIDVDIESETAWV 148
E V+A A++ + R G Y N ++DM L I I+S T V
Sbjct: 41 EVIVRAVTRAAEEGGRGVIARGLGRSYG--DNAQNGGGLVIDMPALNRIH-SIDSGTRLV 97
Query: 149 QAGAILGEVFYRIAEKSKTHGFPAGVCP---TVGVGG----------HFSAGGYGNMMRK 195
A G ++ + + HG V P V VGG H SAG +GN +R
Sbjct: 98 DVDA--GVSLDQLMKAALPHGLWVPVLPGTRQVTVGGAIGCDIHGKNHHSAGSFGNHVRS 155
Query: 196 YGLSVDNIVDAKLVDVNGRILDRNSMG--EDLFWAIRGGGASFGVVLAYKINLVPVPETV 253
+L+ NG + G DLFWA GG G++L I + P
Sbjct: 156 M----------ELLTANGEVRHLTPAGPDSDLFWATVGGNGLTGIILRATIEMTPTETAY 205
Query: 254 TVFKVEKTLEQDATDA 269
+ + T D T A
Sbjct: 206 FIADGDVTGSLDETIA 221
>pdb|4BC7|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Arg419his Mutant
pdb|4BC7|B Chain B, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Arg419his Mutant
pdb|4BC7|C Chain C, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Arg419his Mutant
pdb|4BC7|D Chain D, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Arg419his Mutant
Length = 658
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 48/122 (39%), Gaps = 5/122 (4%)
Query: 135 RSIDVDIESETAWVQAGAILGEVFYRIAEKSKTHGFPAGVCPTVGVGGHFSAGGYGNMMR 194
R + VD + TA V+AG E+ ++ E G VGG S G
Sbjct: 265 RILWVDENNLTAHVEAGITGQELERQLKESGYCTGHEPDSLEFSTVGGWISTRASGMKKN 324
Query: 195 KYGLSVDNIVDAKLVDVNGRILD-----RNSMGEDLFWAIRGGGASFGVVLAYKINLVPV 249
YG D +V K+V G I R S G D+ I G + GV+ I + P
Sbjct: 325 IYGNIEDLVVHMKVVTPRGVIEKSCQGPRMSTGPDIHHFIMGSEGTLGVITEATIKIRPT 384
Query: 250 PE 251
PE
Sbjct: 385 PE 386
>pdb|4BCA|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Tyr578phe Mutant
pdb|4BCA|B Chain B, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Tyr578phe Mutant
pdb|4BCA|C Chain C, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Tyr578phe Mutant
pdb|4BCA|D Chain D, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Tyr578phe Mutant
Length = 658
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 48/122 (39%), Gaps = 5/122 (4%)
Query: 135 RSIDVDIESETAWVQAGAILGEVFYRIAEKSKTHGFPAGVCPTVGVGGHFSAGGYGNMMR 194
R + VD + TA V+AG E+ ++ E G VGG S G
Sbjct: 265 RILWVDENNLTAHVEAGITGQELERQLKESGYCTGHEPDSLEFSTVGGWISTRASGMKKN 324
Query: 195 KYGLSVDNIVDAKLVDVNGRILD-----RNSMGEDLFWAIRGGGASFGVVLAYKINLVPV 249
YG D +V K+V G I R S G D+ I G + GV+ I + P
Sbjct: 325 IYGNIEDLVVHMKVVTPRGVIEKSCQGPRMSTGPDIHHFIMGSEGTLGVITEATIKIRPT 384
Query: 250 PE 251
PE
Sbjct: 385 PE 386
>pdb|4BBY|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Wild-Type
pdb|4BBY|B Chain B, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Wild-Type
pdb|4BBY|C Chain C, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Wild-Type
pdb|4BBY|D Chain D, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Wild-Type
pdb|4BC9|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase: Wild-
Type, Adduct With Cyanoethyl
pdb|4BC9|B Chain B, Mammalian Alkyldihydroxyacetonephosphate Synthase: Wild-
Type, Adduct With Cyanoethyl
pdb|4BC9|C Chain C, Mammalian Alkyldihydroxyacetonephosphate Synthase: Wild-
Type, Adduct With Cyanoethyl
pdb|4BC9|D Chain D, Mammalian Alkyldihydroxyacetonephosphate Synthase: Wild-
Type, Adduct With Cyanoethyl
Length = 658
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 48/122 (39%), Gaps = 5/122 (4%)
Query: 135 RSIDVDIESETAWVQAGAILGEVFYRIAEKSKTHGFPAGVCPTVGVGGHFSAGGYGNMMR 194
R + VD + TA V+AG E+ ++ E G VGG S G
Sbjct: 265 RILWVDENNLTAHVEAGITGQELERQLKESGYCTGHEPDSLEFSTVGGWISTRASGMKKN 324
Query: 195 KYGLSVDNIVDAKLVDVNGRILD-----RNSMGEDLFWAIRGGGASFGVVLAYKINLVPV 249
YG D +V K+V G I R S G D+ I G + GV+ I + P
Sbjct: 325 IYGNIEDLVVHMKVVTPRGVIEKSCQGPRMSTGPDIHHFIMGSEGTLGVITEATIKIRPT 384
Query: 250 PE 251
PE
Sbjct: 385 PE 386
>pdb|3S1F|A Chain A, Asp169glu Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE
COMPLEXED With N6-Isopentenyladenine
Length = 516
Score = 37.0 bits (84), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 180 VGGHFSAGGYGNMMRKYGLSVDNIVDAKLVDVNGRILD-RNSMGEDLFWAIRGGGASFGV 238
VGG S G ++G + N+++ ++ +G ++ + DLF A+ GG FGV
Sbjct: 157 VGGTLSNAGISGQAFRHGPQISNVLEMDVITGHGEMVTCSKQLNADLFDAVLGGLGQFGV 216
Query: 239 VLAYKINLVPVP 250
+ +I + P P
Sbjct: 217 ITRARIAVEPAP 228
>pdb|2QPM|A Chain A, Leu492ala Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE
COMPLEXED With Benzylurea Inhibitor Cpbu
pdb|3KJM|A Chain A, Leu492ala Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE
COMPLEXED With Phenylurea Inhibitor Cppu
Length = 516
Score = 37.0 bits (84), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 180 VGGHFSAGGYGNMMRKYGLSVDNIVDAKLVDVNGRILD-RNSMGEDLFWAIRGGGASFGV 238
VGG S G ++G + N+++ ++ +G ++ + DLF A+ GG FGV
Sbjct: 157 VGGTLSNAGISGQAFRHGPQISNVLEMDVITGHGEMVTCSKQLNADLFDAVLGGLGQFGV 216
Query: 239 VLAYKINLVPVP 250
+ +I + P P
Sbjct: 217 ITRARIAVEPAP 228
>pdb|2QKN|A Chain A, Crystal Structure Of Maize Cytokinin OxidaseDEHYDROGENASE
COMPLEXED With Phenylurea Inhibitor Cppu
pdb|3BW7|A Chain A, Maize Cytokinin OxidaseDEHYDROGENASE COMPLEXED WITH THE
ALLENIC Cytokinin Analog Ha-1
pdb|3C0P|A Chain A, Maize Cytokinin OxidaseDEHYDROGENASE COMPLEXED WITH THE
ALLENIC Cytokinin Analog Ha-8
pdb|3DQ0|A Chain A, Maize Cytokinin OxidaseDEHYDROGENASE COMPLEXED WITH
N6-(3-Methoxy- Phenyl)adenine
pdb|3S1C|A Chain A, Maize Cytokinin OxidaseDEHYDROGENASE COMPLEXED WITH N6-
Isopentenyladenosine
Length = 516
Score = 37.0 bits (84), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 180 VGGHFSAGGYGNMMRKYGLSVDNIVDAKLVDVNGRILD-RNSMGEDLFWAIRGGGASFGV 238
VGG S G ++G + N+++ ++ +G ++ + DLF A+ GG FGV
Sbjct: 157 VGGTLSNAGISGQAFRHGPQISNVLEMDVITGHGEMVTCSKQLNADLFDAVLGGLGQFGV 216
Query: 239 VLAYKINLVPVP 250
+ +I + P P
Sbjct: 217 ITRARIAVEPAP 228
>pdb|1W1O|A Chain A, Native Cytokinin Dehydrogenase
pdb|1W1Q|A Chain A, Plant Cytokinin Dehydrogenase In Complex With
Isopentenyladenine
pdb|1W1R|A Chain A, Plant Cytokinin Dehydrogenase In Complex With Trans-zeatin
pdb|1W1S|A Chain A, Plant Cytokinin Dehydrogenase In Complex With
Benzylaminopurine
Length = 534
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 180 VGGHFSAGGYGNMMRKYGLSVDNIVDAKLVDVNGRILD-RNSMGEDLFWAIRGGGASFGV 238
VGG S G ++G + N+++ ++ +G ++ + DLF A+ GG FGV
Sbjct: 175 VGGTLSNAGISGQAFRHGPQISNVLEMDVITGHGEMVTCSKQLNADLFDAVLGGLGQFGV 234
Query: 239 VLAYKINLVPVP 250
+ +I + P P
Sbjct: 235 ITRARIAVEPAP 246
>pdb|3S1E|A Chain A, Pro427gln Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE
COMPLEXED With N6-Isopentenyladenine
Length = 516
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 180 VGGHFSAGGYGNMMRKYGLSVDNIVDAKLVDVNGRILD-RNSMGEDLFWAIRGGGASFGV 238
VGG S G ++G + N+++ ++ +G ++ + DLF A+ GG FGV
Sbjct: 157 VGGTLSNAGISGQAFRHGPQISNVLEMDVITGHGEMVTCSKQLNADLFDAVLGGLGQFGV 216
Query: 239 VLAYKINLVPVP 250
+ +I + P P
Sbjct: 217 ITRARIAVEPAP 228
>pdb|3S1D|A Chain A, Glu381ser Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE
COMPLEXED With N6-Isopentenyladenosine
Length = 516
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 180 VGGHFSAGGYGNMMRKYGLSVDNIVDAKLVDVNGRILD-RNSMGEDLFWAIRGGGASFGV 238
VGG S G ++G + N+++ ++ +G ++ + DLF A+ GG FGV
Sbjct: 157 VGGTLSNAGISGQAFRHGPQISNVLEMDVITGHGEMVTCSKQLNADLFDAVLGGLGQFGV 216
Query: 239 VLAYKINLVPVP 250
+ +I + P P
Sbjct: 217 ITRARIAVEPAP 228
>pdb|2UUU|A Chain A, Alkyldihydroxyacetonephosphate Synthase In P212121
pdb|2UUU|B Chain B, Alkyldihydroxyacetonephosphate Synthase In P212121
pdb|2UUU|C Chain C, Alkyldihydroxyacetonephosphate Synthase In P212121
pdb|2UUU|D Chain D, Alkyldihydroxyacetonephosphate Synthase In P212121
pdb|2UUV|A Chain A, Alkyldihydroxyacetonephosphate Synthase In P1
pdb|2UUV|B Chain B, Alkyldihydroxyacetonephosphate Synthase In P1
pdb|2UUV|C Chain C, Alkyldihydroxyacetonephosphate Synthase In P1
pdb|2UUV|D Chain D, Alkyldihydroxyacetonephosphate Synthase In P1
Length = 584
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 76/184 (41%), Gaps = 7/184 (3%)
Query: 80 PVLIVAAMHESHVQAAIICAKKHNLQMKIRSGGHDYEG-LSYVSNVPFFI-LDMFNLRSI 137
P LIV V+ + A K+N+ + GG + G + VSN F + +DM + +
Sbjct: 138 PDLIVLPHSHEEVERLVQLAHKYNVVIIPMGGGSNIVGAIEPVSNERFTVSIDMRRMNKV 197
Query: 138 D-VDIESETAWVQAGAILGEVFYRIAEKSKTHGFPAGVCPTVGVGGHFSAGGYGNMMRKY 196
VD TA +Q G + E+ ++ ++ + G +GG + G+ KY
Sbjct: 198 LWVDRREMTACIQVGIMGPELEKQLHKQGVSLGHDPDSFEFSTLGGWLATCSSGHQSDKY 257
Query: 197 GLSVDNIVDAKLVDVNGRILDRN----SMGEDLFWAIRGGGASFGVVLAYKINLVPVPET 252
G D V + V G + RN G + I G + G++ + + VP+
Sbjct: 258 GDIEDMAVSFRTVTPTGTLELRNGARSGAGINYKHIILGSEGTLGIITEAVMKVHAVPQA 317
Query: 253 VTVF 256
V +
Sbjct: 318 VEYY 321
>pdb|1JJF|A Chain A, Structural Basis For The Substrate Specificity Of The
Feruloyl Esterase Domain Of The Cellulosomal Xylanase Z
Of Clostridium Thermocellum
Length = 268
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 37/93 (39%), Gaps = 9/93 (9%)
Query: 437 NWNEEGVDAANYYIDLTRQLYDYLTPFVSKNPRQSFLAYRDLDLGTNNHKFETGYSEGRA 496
N N G A+ Y + T+ L + L P++ N + Y D + H+ G S G
Sbjct: 107 NTNAAGPGIADGYENFTKDLLNSLIPYIESN----YSVYTDRE-----HRAIAGLSMGGG 157
Query: 497 YGINYFLENFDRLVEIKTKVDPDNFFRNEQSIP 529
N L N D+ I N + NE+ P
Sbjct: 158 QSFNIGLTNLDKFAYIGPISAAPNTYPNERLFP 190
>pdb|1JT2|A Chain A, Structural Basis For The Substrate Specificity Of The
Ferul Domain Of The Cellulosomal Xylanase Z From C.
Thermocellum
Length = 268
Score = 32.0 bits (71), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 37/93 (39%), Gaps = 9/93 (9%)
Query: 437 NWNEEGVDAANYYIDLTRQLYDYLTPFVSKNPRQSFLAYRDLDLGTNNHKFETGYSEGRA 496
N N G A+ Y + T+ L + L P++ N + Y D + H+ G + G
Sbjct: 107 NTNAAGPGIADGYENFTKDLLNSLIPYIESN----YSVYTDRE-----HRAIAGLAMGGG 157
Query: 497 YGINYFLENFDRLVEIKTKVDPDNFFRNEQSIP 529
N L N D+ I N + NE+ P
Sbjct: 158 QSFNIGLTNLDKFAYIGPISAAPNTYPNERLFP 190
>pdb|3PE9|A Chain A, Structures Of Clostridium Thermocellum Cbha
Fibronectin(Iii)-Like Modules
pdb|3PE9|B Chain B, Structures Of Clostridium Thermocellum Cbha
Fibronectin(Iii)-Like Modules
pdb|3PE9|C Chain C, Structures Of Clostridium Thermocellum Cbha
Fibronectin(Iii)-Like Modules
pdb|3PE9|D Chain D, Structures Of Clostridium Thermocellum Cbha
Fibronectin(Iii)-Like Modules
Length = 98
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 37/88 (42%), Gaps = 11/88 (12%)
Query: 395 MIELERPYMNFNPYGGKMHEIPATASPFPHRDGNLWKIQYVTNWNEEGVDAANYYIDLTR 454
M++L P N YG + +I ATAS DG + ++ ++ + G D
Sbjct: 1 MVKLTAPKSNVVAYGNEFLKITATAS---DSDGKISRVDFLVDGEVIGSD--------RE 49
Query: 455 QLYDYLTPFVSKNPRQSFLAYRDLDLGT 482
Y+Y V N S +AY D D +
Sbjct: 50 APYEYEWKAVEGNHEISVIAYDDDDAAS 77
>pdb|3PDD|A Chain A, Structures Of Clostridium Thermocellum Cbha
Fibronectin(Iii)-Like Modules
Length = 190
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 11/93 (11%)
Query: 391 LWKKMIELERPYMNFNPYGGKMHEIPATASPFPHRDGNLWKIQYVTNWNEEGVDAANYYI 450
+ K ++L P N YG + +I ATAS DG + ++ ++ + G D
Sbjct: 89 IVKPTVKLTAPKSNVVAYGNEFLKITATAS---DSDGKISRVDFLVDGEVIGSD------ 139
Query: 451 DLTRQLYDYLTPFVSKNPRQSFLAYRDLDLGTN 483
Y+Y V N S +AY D D +
Sbjct: 140 --REAPYEYEWKAVEGNHEISVIAYDDDDAAST 170
>pdb|2VRK|A Chain A, Structure Of A Seleno-Methionyl Derivative Of Wild Type
Arabinofuranosidase From Thermobacillus Xylanilyticus
pdb|2VRK|B Chain B, Structure Of A Seleno-Methionyl Derivative Of Wild Type
Arabinofuranosidase From Thermobacillus Xylanilyticus
pdb|2VRK|C Chain C, Structure Of A Seleno-Methionyl Derivative Of Wild Type
Arabinofuranosidase From Thermobacillus Xylanilyticus
Length = 496
Score = 28.9 bits (63), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 4/38 (10%)
Query: 430 WKIQYV----TNWNEEGVDAANYYIDLTRQLYDYLTPF 463
W+I+Y NW G A YY DL RQ YL +
Sbjct: 166 WRIKYWGVGNENWGCGGNXRAEYYADLYRQFQTYLRNY 203
>pdb|4AM6|A Chain A, C-terminal Domain Of Actin-related Protein Arp8 From S.
Cerevisiae
pdb|4AM6|B Chain B, C-terminal Domain Of Actin-related Protein Arp8 From S.
Cerevisiae
pdb|4AM7|A Chain A, Adp-bound C-terminal Domain Of Actin-related Protein Arp8
From S. Cerevisiae
pdb|4AM7|B Chain B, Adp-bound C-terminal Domain Of Actin-related Protein Arp8
From S. Cerevisiae
Length = 655
Score = 28.5 bits (62), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Query: 314 GGSERLLSITDKGFPELGLTRSDCTELSWI--DSVVYWGSFPAGTPASVLLDRTPLTLSS 371
E+++S + PE+ ++D + + WI DS +Y+GS + R P S
Sbjct: 122 NAHEQVVSFNENSKPEIISEKNDPSPIEWIFDDSKLYYGSDALRCVDEKFVIRKPFRGGS 181
Query: 372 LKRKSDY 378
KS Y
Sbjct: 182 FNVKSPY 188
>pdb|2QGZ|A Chain A, Crystal Structure Of A Putative Primosome Component From
Streptococcus Pyogenes Serotype M3. Northeast Structural
Genomics Target Dr58
Length = 308
Score = 28.5 bits (62), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 7/55 (12%)
Query: 110 SGGHDYEGLSYVSNVPFFILDMFNLRSIDVDIESETAWVQAGAILGEVFYRIAEK 164
S G E + V NVP ILD D+ E T+WV+ + + YR+ E+
Sbjct: 201 SNGSVKEEIDAVKNVPVLILD-------DIGAEQATSWVRDEVLQVILQYRMLEE 248
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,805,536
Number of Sequences: 62578
Number of extensions: 759732
Number of successful extensions: 1709
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 1586
Number of HSP's gapped (non-prelim): 58
length of query: 538
length of database: 14,973,337
effective HSP length: 103
effective length of query: 435
effective length of database: 8,527,803
effective search space: 3709594305
effective search space used: 3709594305
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)