Query 009297
Match_columns 538
No_of_seqs 312 out of 2334
Neff 8.1
Searched_HMMs 46136
Date Thu Mar 28 22:50:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009297.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009297hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02441 cytokinin dehydrogena 100.0 5.7E-39 1.2E-43 341.6 41.8 188 71-262 56-254 (525)
2 TIGR01678 FAD_lactone_ox sugar 100.0 1.2E-32 2.6E-37 291.2 34.8 195 72-277 7-204 (438)
3 TIGR01676 GLDHase galactonolac 100.0 2.1E-32 4.6E-37 290.9 22.7 237 10-277 12-251 (541)
4 PLN02805 D-lactate dehydrogena 100.0 3E-32 6.4E-37 294.5 23.1 191 78-271 132-329 (555)
5 COG0277 GlcD FAD/FMN-containin 100.0 4.1E-31 8.9E-36 284.3 27.8 185 76-262 28-219 (459)
6 PRK11230 glycolate oxidase sub 100.0 3.9E-31 8.5E-36 284.3 23.2 195 76-271 52-252 (499)
7 TIGR01677 pln_FAD_oxido plant- 100.0 7.8E-31 1.7E-35 282.8 23.0 179 72-252 24-214 (557)
8 TIGR01679 bact_FAD_ox FAD-link 100.0 7.7E-31 1.7E-35 277.2 21.4 172 72-252 4-178 (419)
9 PRK11282 glcE glycolate oxidas 100.0 1.8E-29 3.9E-34 258.2 20.1 170 88-261 3-181 (352)
10 TIGR00387 glcD glycolate oxida 100.0 1.9E-29 4.1E-34 266.9 19.7 189 83-272 1-196 (413)
11 KOG1231 Proteins containing th 100.0 6.5E-28 1.4E-32 242.4 27.8 174 76-251 60-240 (505)
12 PLN02465 L-galactono-1,4-lacto 100.0 3.1E-28 6.8E-33 261.2 24.9 176 71-252 88-266 (573)
13 PF01565 FAD_binding_4: FAD bi 99.9 2.5E-26 5.4E-31 206.8 13.8 136 80-217 1-137 (139)
14 PRK13905 murB UDP-N-acetylenol 99.9 4E-24 8.6E-29 216.2 13.5 161 78-250 29-193 (298)
15 PRK11183 D-lactate dehydrogena 99.9 1.7E-22 3.6E-27 212.2 18.6 194 77-273 36-289 (564)
16 PRK12436 UDP-N-acetylenolpyruv 99.9 1.3E-21 2.7E-26 197.7 13.5 161 77-249 34-197 (305)
17 PRK14652 UDP-N-acetylenolpyruv 99.9 1.9E-21 4.2E-26 195.9 14.0 161 77-250 33-196 (302)
18 TIGR00179 murB UDP-N-acetyleno 99.9 2.5E-21 5.3E-26 194.0 13.7 160 78-248 11-174 (284)
19 PRK13906 murB UDP-N-acetylenol 99.8 6.7E-21 1.4E-25 192.5 13.8 160 78-249 35-197 (307)
20 KOG4730 D-arabinono-1, 4-lacto 99.8 1.6E-20 3.5E-25 189.3 16.1 182 72-258 42-226 (518)
21 PRK13903 murB UDP-N-acetylenol 99.8 2.4E-20 5.2E-25 191.2 15.4 162 78-250 31-197 (363)
22 PRK14649 UDP-N-acetylenolpyruv 99.8 6.7E-19 1.4E-23 177.1 17.3 163 78-249 19-192 (295)
23 KOG1232 Proteins containing th 99.8 1.5E-19 3.2E-24 178.0 11.0 185 68-253 78-269 (511)
24 KOG1233 Alkyl-dihydroxyacetone 99.8 9.2E-19 2E-23 172.7 16.2 190 72-261 153-351 (613)
25 PRK14653 UDP-N-acetylenolpyruv 99.7 2.4E-17 5.1E-22 165.3 13.7 159 78-250 32-194 (297)
26 COG0812 MurB UDP-N-acetylmuram 99.7 3.3E-16 7.1E-21 154.1 14.0 162 78-249 19-183 (291)
27 PRK14650 UDP-N-acetylenolpyruv 99.7 4.2E-16 9.1E-21 155.8 13.2 161 78-250 31-195 (302)
28 PRK00046 murB UDP-N-acetylenol 99.7 7.2E-16 1.6E-20 156.4 12.8 160 78-249 19-188 (334)
29 PF08031 BBE: Berberine and be 99.6 9.9E-17 2.1E-21 115.3 2.7 47 471-529 1-47 (47)
30 PRK14648 UDP-N-acetylenolpyruv 99.6 3.5E-15 7.5E-20 151.1 13.7 165 78-250 28-237 (354)
31 PRK14651 UDP-N-acetylenolpyruv 99.5 3.4E-13 7.3E-18 133.1 12.2 148 79-249 20-170 (273)
32 KOG1262 FAD-binding protein DI 99.5 9.9E-14 2.1E-18 137.7 7.3 124 129-253 106-232 (543)
33 PRK13904 murB UDP-N-acetylenol 99.2 7E-11 1.5E-15 115.6 10.2 141 79-250 18-160 (257)
34 PF00941 FAD_binding_5: FAD bi 95.6 0.0073 1.6E-07 56.1 2.4 77 80-160 2-80 (171)
35 PRK09799 putative oxidoreducta 93.7 0.2 4.3E-06 49.8 7.2 139 82-245 4-155 (258)
36 TIGR03312 Se_sel_red_FAD proba 92.1 0.46 9.9E-06 47.2 7.3 139 83-245 4-154 (257)
37 PRK09971 xanthine dehydrogenas 91.7 0.35 7.7E-06 48.9 6.1 151 82-248 6-175 (291)
38 PF09265 Cytokin-bind: Cytokin 91.6 0.061 1.3E-06 53.6 0.5 33 495-528 248-280 (281)
39 TIGR02963 xanthine_xdhA xanthi 90.5 0.63 1.4E-05 50.4 6.9 150 80-245 192-357 (467)
40 PLN00107 FAD-dependent oxidore 88.2 1.7 3.7E-05 42.7 7.3 22 504-525 176-197 (257)
41 TIGR03195 4hydrxCoA_B 4-hydrox 87.8 0.76 1.6E-05 47.1 4.9 99 82-186 6-116 (321)
42 TIGR03199 pucC xanthine dehydr 86.0 0.98 2.1E-05 45.0 4.5 98 86-187 1-109 (264)
43 COG4630 XdhA Xanthine dehydrog 78.6 5.4 0.00012 41.1 6.4 140 80-231 203-353 (493)
44 PLN00192 aldehyde oxidase 78.1 5.2 0.00011 49.1 7.4 84 80-164 233-317 (1344)
45 PF04030 ALO: D-arabinono-1,4- 77.5 2.8 6E-05 41.5 4.1 22 504-525 233-254 (259)
46 PLN02906 xanthine dehydrogenas 77.5 3.5 7.6E-05 50.5 5.7 79 81-163 229-309 (1319)
47 PF02913 FAD-oxidase_C: FAD li 77.3 3.1 6.6E-05 40.2 4.4 28 497-524 217-245 (248)
48 TIGR02969 mam_aldehyde_ox alde 74.1 7.5 0.00016 47.7 7.3 78 81-162 237-316 (1330)
49 TIGR01677 pln_FAD_oxido plant- 66.9 9.4 0.0002 42.3 5.5 22 504-525 482-503 (557)
50 COG1319 CoxM Aerobic-type carb 64.2 20 0.00043 36.1 6.7 75 80-158 3-80 (284)
51 TIGR00387 glcD glycolate oxida 62.9 7.6 0.00016 41.4 3.8 28 497-524 383-411 (413)
52 TIGR01679 bact_FAD_ox FAD-link 57.8 5.3 0.00012 42.6 1.5 25 501-526 389-413 (419)
53 PLN02805 D-lactate dehydrogena 57.0 19 0.00041 39.9 5.6 33 496-528 516-549 (555)
54 COG4981 Enoyl reductase domain 52.6 29 0.00062 37.7 5.8 106 32-155 112-225 (717)
55 KOG4730 D-arabinono-1, 4-lacto 50.7 7.9 0.00017 41.0 1.3 20 504-523 485-504 (518)
56 PRK11230 glycolate oxidase sub 50.2 20 0.00044 39.2 4.5 33 497-529 440-473 (499)
57 PF02601 Exonuc_VII_L: Exonucl 36.9 51 0.0011 33.6 4.8 58 49-113 18-87 (319)
58 PRK11282 glcE glycolate oxidas 36.7 21 0.00045 37.2 1.9 22 503-524 323-345 (352)
59 COG4359 Uncharacterized conser 30.1 56 0.0012 30.7 3.3 25 92-116 78-102 (220)
60 PRK00286 xseA exodeoxyribonucl 26.9 78 0.0017 33.9 4.3 57 49-112 139-203 (438)
61 COG1519 KdtA 3-deoxy-D-manno-o 24.7 3.5E+02 0.0076 28.8 8.4 34 79-112 260-293 (419)
62 cd07033 TPP_PYR_DXS_TK_like Py 24.2 1.1E+02 0.0024 27.6 4.2 30 81-110 125-154 (156)
63 PF02779 Transket_pyr: Transke 21.2 1.4E+02 0.003 27.5 4.4 32 81-112 139-172 (178)
64 COG0351 ThiD Hydroxymethylpyri 20.5 3.2E+02 0.007 27.2 6.9 92 48-166 132-226 (263)
65 PF01113 DapB_N: Dihydrodipico 20.3 1.3E+02 0.0027 26.0 3.6 36 79-114 67-102 (124)
No 1
>PLN02441 cytokinin dehydrogenase
Probab=100.00 E-value=5.7e-39 Score=341.58 Aligned_cols=188 Identities=21% Similarity=0.301 Sum_probs=167.1
Q ss_pred ccCCCCCCCccEEEEcCCHHHHHHHHHHHH--hCCCcEEEEecCcCCCCCccccCCCeEEEEecCccc------E-EEcC
Q 009297 71 RFNTSSTPKPVLIVAAMHESHVQAAIICAK--KHNLQMKIRSGGHDYEGLSYVSNVPFFILDMFNLRS------I-DVDI 141 (538)
Q Consensus 71 r~~~~~~~~p~~vv~p~s~~dv~~~v~~a~--~~~~~~~~~ggGh~~~g~s~~~~~~g~vIdl~~l~~------i-~~d~ 141 (538)
.|+......|.+|++|+|++||+++|++|+ +++++|.+||+|||+.|.+.. .+|++|||++||+ + ++|.
T Consensus 56 d~g~~~~~~P~aVv~P~S~eDVa~iVr~A~~~~~~~~V~~rGgGHS~~G~a~~--~~GivIdms~Ln~i~~~~~ii~vd~ 133 (525)
T PLN02441 56 DFGNLVHSLPAAVLYPSSVEDIASLVRAAYGSSSPLTVAARGHGHSLNGQAQA--PGGVVVDMRSLRGGVRGPPVIVVSG 133 (525)
T ss_pred CcccccCCCCCEEEeCCCHHHHHHHHHHHhhccCCceEEEECCCcCCCCCccC--CCeEEEECCCCCCcCccCceEEEcC
Confidence 477777789999999999999999999997 679999999999999988643 3689999999999 3 7888
Q ss_pred CCCeEEEeCCccHHHHHHHHHHhCCccccC-CCCCCccccccccccCCcCCCccccCccccceeEEEEEecCCeEE-ecc
Q 009297 142 ESETAWVQAGAILGEVFYRIAEKSKTHGFP-AGVCPTVGVGGHFSAGGYGNMMRKYGLSVDNIVDAKLVDVNGRIL-DRN 219 (538)
Q Consensus 142 ~~~~v~v~~G~~~~~l~~~l~~~g~~l~~~-~G~~~~vgigG~~~gGg~g~~~~~~G~~~D~v~~~~vV~a~G~~~-~~~ 219 (538)
+..+|+|++|++|.++++++.++| ++.+ .+....+++||.+++||+|..+.+||..+|+|+++|||++||+++ ++.
T Consensus 134 ~~~~VtV~aG~~~~dv~~~l~~~G--laP~~~~d~~~~TVGG~ist~G~gg~s~ryG~~~d~Vl~leVVtadGevv~~s~ 211 (525)
T PLN02441 134 DGPYVDVSGGELWIDVLKATLKHG--LAPRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLELDVVTGKGEVVTCSP 211 (525)
T ss_pred CCCEEEEcCCCCHHHHHHHHHHCC--CccCCccccCceEEeEEcCCCCccccccccCcHHHhEEEEEEEeCCceEEEeCC
Confidence 999999999999999999999998 4433 356678899999999999999999999999999999999999999 456
Q ss_pred CCCchhhhhhhhccCccEEEEEEEEEEeecCceEEEEEEecCh
Q 009297 220 SMGEDLFWAIRGGGASFGVVLAYKINLVPVPETVTVFKVEKTL 262 (538)
Q Consensus 220 ~~~~dLf~a~rG~~g~~Givt~~~~~~~p~~~~~~~~~~~~~~ 262 (538)
.+|+|||||+|||+|+|||||++|+|++|.|+.+.+..+.+..
T Consensus 212 ~~n~DLF~Av~GglG~fGIIT~atlrL~Pap~~v~~~~~~y~~ 254 (525)
T PLN02441 212 TQNSDLFFAVLGGLGQFGIITRARIALEPAPKRVRWIRVLYSD 254 (525)
T ss_pred CCChhHHHhhccCCCCcEEEEEEEEEEEecCCceEEEEEEcCC
Confidence 6799999999998899999999999999999866665665654
No 2
>TIGR01678 FAD_lactone_ox sugar 1,4-lactone oxidases. This model represents a family of at least two different sugar 1,4 lactone oxidases, both involved in synthesizing ascorbic acid or a derivative. These include L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae. Members are proposed to have the cofactor FAD covalently bound at a site specified by Prosite motif PS00862; OX2_COVAL_FAD; 1.
Probab=100.00 E-value=1.2e-32 Score=291.16 Aligned_cols=195 Identities=19% Similarity=0.334 Sum_probs=169.6
Q ss_pred cCCCCCCCccEEEEcCCHHHHHHHHHHHHhCCCcEEEEecCcCCCCCccccCCCeEEEEecCcccE-EEcCCCCeEEEeC
Q 009297 72 FNTSSTPKPVLIVAAMHESHVQAAIICAKKHNLQMKIRSGGHDYEGLSYVSNVPFFILDMFNLRSI-DVDIESETAWVQA 150 (538)
Q Consensus 72 ~~~~~~~~p~~vv~p~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~s~~~~~~g~vIdl~~l~~i-~~d~~~~~v~v~~ 150 (538)
|+.+....|.+|+.|+|++||+++|++|+++++++.++|+|||+.+.+. .+|++|||++||+| ++|+++++|+|+|
T Consensus 7 W~~~~~~~p~~v~~P~s~eev~~iv~~A~~~~~~v~v~G~GhS~s~~~~---~~gvvIdl~~l~~i~~id~~~~~vtV~a 83 (438)
T TIGR01678 7 WAKTYSASPEVYYQPTSVEEVREVLALAREQKKKVKVVGGGHSPSDIAC---TDGFLIHLDKMNKVLQFDKEKKQITVEA 83 (438)
T ss_pred CCCcccCCCCEEEecCCHHHHHHHHHHHHHCCCeEEEECCCCCCCCCcc---CCeEEEEhhhcCCceEEcCCCCEEEEcC
Confidence 8887888999999999999999999999999999999999999987642 25799999999998 9999999999999
Q ss_pred CccHHHHHHHHHHhCCccccC-CCCCCccccccccccCCcCCCccccCccccceeEEEEEecCCeEEe-ccCCCchhhhh
Q 009297 151 GAILGEVFYRIAEKSKTHGFP-AGVCPTVGVGGHFSAGGYGNMMRKYGLSVDNIVDAKLVDVNGRILD-RNSMGEDLFWA 228 (538)
Q Consensus 151 G~~~~~l~~~l~~~g~~l~~~-~G~~~~vgigG~~~gGg~g~~~~~~G~~~D~v~~~~vV~a~G~~~~-~~~~~~dLf~a 228 (538)
|+++.+|.+.|.++| +.++ .|.++.++|||.+++|+||. +.+||..+|+|++++||++||++++ +..+++|||||
T Consensus 84 G~~l~~L~~~L~~~G--l~l~~~g~~~~~TvGG~iatg~hG~-~~~~G~~~d~V~~l~vV~~~G~i~~~s~~~~~dlf~a 160 (438)
T TIGR01678 84 GIRLYQLHEQLDEHG--YSMSNLGSISEVSVAGIISTGTHGS-SIKHGILATQVVALTIMTADGEVLECSEERNADVFQA 160 (438)
T ss_pred CCCHHHHHHHHHHcC--CEecCCCCCCCceeeehhcCCCCCC-ccccCcHHhhEEEEEEEcCCCcEEEeCCCCChhHHHH
Confidence 999999999999999 5555 58889999999999999996 7899999999999999999999994 55678999999
Q ss_pred hhhccCccEEEEEEEEEEeecCceEEEEEEecChhhHHHHHHHHHHHhh
Q 009297 229 IRGGGASFGVVLAYKINLVPVPETVTVFKVEKTLEQDATDAVDKWQHVA 277 (538)
Q Consensus 229 ~rG~~g~~Givt~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (538)
.+|+.|+|||||++|||++|........ .. ....++++.|++..
T Consensus 161 ~~~~~G~lGIIt~vtl~l~p~~~l~~~~--~~---~~~~~~~~~~~~~~ 204 (438)
T TIGR01678 161 ARVSLGCLGIIVTVTIQVVPQFHLQETS--FV---STLKELLDNWDSHW 204 (438)
T ss_pred HhcCCCceEeeEEEEEEEEeccceEEEE--ec---CCHHHHHHHHHHHh
Confidence 9988899999999999999987543322 11 12356666676644
No 3
>TIGR01676 GLDHase galactonolactone dehydrogenase. This model represents L-Galactono-gamma-lactone dehydrogenase (EC 1.3.2.3). This enzyme catalyzes the final step in ascorbic acid biosynthesis in higher plants. This protein is homologous to ascorbic acid biosynthesis enzymes of other species: L-gulono-gamma-lactone oxidase in rat and L-galactono-gamma-lactone oxidase in yeast. All three covalently bind the cofactor FAD.
Probab=100.00 E-value=2.1e-32 Score=290.93 Aligned_cols=237 Identities=15% Similarity=0.187 Sum_probs=190.0
Q ss_pred HHHHHHHHHHhhhhcccCCCcchHHhhhccCCCCCCCCcceEeCCCCCCcHHHHHhhhhccccCCCCCCCccEEEEcCCH
Q 009297 10 VISLVSVLVLYISWSWRVNSHESFHQCLLNNSPPSHPIFQAIHTPQNSSYSSVLQSYIRNLRFNTSSTPKPVLIVAAMHE 89 (538)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~cl~~~~~~~~~~~~~v~~p~~~~y~~~~~~~~~n~r~~~~~~~~p~~vv~p~s~ 89 (538)
+|.|-+-.+-|++++-.......-.+|..... +|+++ . .|. +|+.+....|..+++|+|+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~---~----~w~--NWsg~~~~~p~~~~~P~s~ 71 (541)
T TIGR01676 12 ALLIFCGAATYYSFPFPENAKHKKAQIFRYAP-----------LPDDL---H----TVS--NWSGTHEVLTRTFHQPEAI 71 (541)
T ss_pred HHHhccchheeEeccCCccccccccccccccc-----------ccccc---c----ccc--ccCCccccCcceEECCCCH
Confidence 34444455667777766666555556655532 34322 0 122 4999889999999999999
Q ss_pred HHHHHHHHHHHhCCCcEEEEecCcCCCCCccccCCCeEEEEecCcccE-EEcCCCCeEEEeCCccHHHHHHHHHHhCCcc
Q 009297 90 SHVQAAIICAKKHNLQMKIRSGGHDYEGLSYVSNVPFFILDMFNLRSI-DVDIESETAWVQAGAILGEVFYRIAEKSKTH 168 (538)
Q Consensus 90 ~dv~~~v~~a~~~~~~~~~~ggGh~~~g~s~~~~~~g~vIdl~~l~~i-~~d~~~~~v~v~~G~~~~~l~~~l~~~g~~l 168 (538)
+||+++|++|++++++|+++|+|||+.+.+.. .+.+|||++||+| ++|+++++|+|+||+++.+|.+.|.++| +
T Consensus 72 eEV~~iV~~A~~~g~~Vr~~GsGhS~sg~a~t---~g~lldL~~ln~Vl~vD~~~~tVtV~AG~~l~~L~~~L~~~G--l 146 (541)
T TIGR01676 72 EELEGIVKQANEKKARIRPVGSGLSPNGIGLS---RAGMVNLALMDKVLEVDEEKKRVRVQAGIRVQQLVDAIKEYG--I 146 (541)
T ss_pred HHHHHHHHHHHHcCCcEEEECCCcCCCCcccC---CCeEEEhhhCCCCEEEcCCCCEEEEcCCCCHHHHHHHHHHcC--C
Confidence 99999999999999999999999999987542 3458999999997 9999999999999999999999999999 5
Q ss_pred ccC-CCCCCccccccccccCCcCCCccccCccccceeEEEEEecCCeEE-eccCCCchhhhhhhhccCccEEEEEEEEEE
Q 009297 169 GFP-AGVCPTVGVGGHFSAGGYGNMMRKYGLSVDNIVDAKLVDVNGRIL-DRNSMGEDLFWAIRGGGASFGVVLAYKINL 246 (538)
Q Consensus 169 ~~~-~G~~~~vgigG~~~gGg~g~~~~~~G~~~D~v~~~~vV~a~G~~~-~~~~~~~dLf~a~rG~~g~~Givt~~~~~~ 246 (538)
+++ .|.+..++|||.+++|+||.. .+||..+|+|++++||++||+++ .+..+++|||||.|||.|+|||||++|||+
T Consensus 147 al~n~gsi~~~TIGGaiatgtHGtg-~~~G~l~d~V~~l~lVta~G~vv~~s~~~~pdLF~AargslG~LGVItevTLr~ 225 (541)
T TIGR01676 147 TLQNFASIREQQIGGIIQVGAHGTG-AKLPPIDEQVIAMKLVTPAKGTIEISKDKDPELFFLARCGLGGLGVVAEVTLQC 225 (541)
T ss_pred EeccCCCCCCceEccccccCCcCCC-CCCCCHHHhEEEEEEEECCCCEEEECCCCCHHHHHHHhcCCCceEeEEEEEEEE
Confidence 554 478889999999999999985 57999999999999999999999 455678999999998889999999999999
Q ss_pred eecCceEEEEEEecChhhHHHHHHHHHHHhh
Q 009297 247 VPVPETVTVFKVEKTLEQDATDAVDKWQHVA 277 (538)
Q Consensus 247 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (538)
+|.+.... .....+ ..++++.+.++.
T Consensus 226 ~Pa~~l~~-~~~~~~----~~e~l~~~~~~~ 251 (541)
T TIGR01676 226 VERQELVE-HTFISN----MKDIKKNHKKFL 251 (541)
T ss_pred EeccceeE-EEEecC----HHHHHHHHHHHH
Confidence 99986432 222223 345566666644
No 4
>PLN02805 D-lactate dehydrogenase [cytochrome]
Probab=100.00 E-value=3e-32 Score=294.50 Aligned_cols=191 Identities=21% Similarity=0.288 Sum_probs=167.4
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHhCCCcEEEEecCcCCCCCccccCCCeEEEEecCcccE-EEcCCCCeEEEeCCccHHH
Q 009297 78 PKPVLIVAAMHESHVQAAIICAKKHNLQMKIRSGGHDYEGLSYVSNVPFFILDMFNLRSI-DVDIESETAWVQAGAILGE 156 (538)
Q Consensus 78 ~~p~~vv~p~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~s~~~~~~g~vIdl~~l~~i-~~d~~~~~v~v~~G~~~~~ 156 (538)
..|.+|++|+|++||+++|++|+++++|+++||||||+.|.+.. ..+|++|||++||+| ++|+++.+++||||+++.+
T Consensus 132 ~~P~~Vv~P~s~eeV~~ivk~a~~~~ipv~prGgGts~~G~~~~-~~ggivIdl~~mn~I~~id~~~~~vtVeaGv~~~~ 210 (555)
T PLN02805 132 NIPDVVVFPRSEEEVSKIVKSCNKYKVPIVPYGGATSIEGHTLA-PHGGVCIDMSLMKSVKALHVEDMDVVVEPGIGWLE 210 (555)
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHCCCcEEEECCCCCCCCCccC-CCCEEEEEccCCCCeEEEeCCCCEEEEeCCcCHHH
Confidence 46999999999999999999999999999999999999988643 346899999999998 7999999999999999999
Q ss_pred HHHHHHHhCCccccCCCCCCccccccccccCCcCCCccccCccccceeEEEEEecCCeEEec------cCCCchhhhhhh
Q 009297 157 VFYRIAEKSKTHGFPAGVCPTVGVGGHFSAGGYGNMMRKYGLSVDNIVDAKLVDVNGRILDR------NSMGEDLFWAIR 230 (538)
Q Consensus 157 l~~~l~~~g~~l~~~~G~~~~vgigG~~~gGg~g~~~~~~G~~~D~v~~~~vV~a~G~~~~~------~~~~~dLf~a~r 230 (538)
|+++|.++| +.+|...++.++|||.++++++|..+.+||.++|+|+++|||++||+++.. ...++||||+++
T Consensus 211 L~~~L~~~G--l~~p~~p~~~~TIGG~ia~n~~G~~s~~yG~~~d~V~~levVl~dG~iv~~~~~~~k~~~g~dL~~l~~ 288 (555)
T PLN02805 211 LNEYLEPYG--LFFPLDPGPGATIGGMCATRCSGSLAVRYGTMRDNVISLKVVLPNGDVVKTASRARKSAAGYDLTRLVI 288 (555)
T ss_pred HHHHHHHcC--CEeCCCCccccChhhHhhCCCcccccCccccHHHhEEEEEEEcCCceEEEecCccccCCCCccHHHHhc
Confidence 999999999 566666667789999999999999999999999999999999999999942 124689999999
Q ss_pred hccCccEEEEEEEEEEeecCceEEEEEEecChhhHHHHHHH
Q 009297 231 GGGASFGVVLAYKINLVPVPETVTVFKVEKTLEQDATDAVD 271 (538)
Q Consensus 231 G~~g~~Givt~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 271 (538)
|+.|+|||||+++||++|.|+......+.|+..+.+.+++.
T Consensus 289 GseGtLGIIT~~tlrl~p~P~~~~~~~~~f~~~~~a~~av~ 329 (555)
T PLN02805 289 GSEGTLGVITEVTLRLQKIPQHSVVAMCNFPTIKDAADVAI 329 (555)
T ss_pred cCCCceEEEEEEEEEeecCCcceEEEEEEcCCHHHHHHHHH
Confidence 88899999999999999999866666666664444444443
No 5
>COG0277 GlcD FAD/FMN-containing dehydrogenases [Energy production and conversion]
Probab=100.00 E-value=4.1e-31 Score=284.33 Aligned_cols=185 Identities=25% Similarity=0.348 Sum_probs=161.5
Q ss_pred CCCCccEEEEcCCHHHHHHHHHHHHhCCCcEEEEecCcCCCCCccccCCCeEEEEecCcccE-EEcCCCCeEEEeCCccH
Q 009297 76 STPKPVLIVAAMHESHVQAAIICAKKHNLQMKIRSGGHDYEGLSYVSNVPFFILDMFNLRSI-DVDIESETAWVQAGAIL 154 (538)
Q Consensus 76 ~~~~p~~vv~p~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~s~~~~~~g~vIdl~~l~~i-~~d~~~~~v~v~~G~~~ 154 (538)
....|.+|+.|+|++||+++|++|.++++||++||+|||+.|.+.. . +|++|||++||+| ++|+++++++|+||+++
T Consensus 28 ~~~~p~~v~~p~s~~eV~~iv~~a~~~~~~v~prG~gts~~g~~~~-~-~gvvl~l~~mn~i~~id~~~~~~~v~aGv~l 105 (459)
T COG0277 28 YRGLPLAVVFPKSEEEVAAILRLANENGIPVVPRGGGTSLSGGAVP-D-GGVVLDLSRLNRILEIDPEDGTATVQAGVTL 105 (459)
T ss_pred hcCCCCEEEccCCHHHHHHHHHHHHHcCCeEEEECCCCCccccccC-C-CcEEEEchhhcchhccCcCCCEEEEcCCccH
Confidence 3468899999999999999999999999999999999999988743 3 4899999999999 79999999999999999
Q ss_pred HHHHHHHHHhCCccccCCCCCCccccccccccCCcCCCccccCccccceeEEEEEecCCeEEec------cCCCchhhhh
Q 009297 155 GEVFYRIAEKSKTHGFPAGVCPTVGVGGHFSAGGYGNMMRKYGLSVDNIVDAKLVDVNGRILDR------NSMGEDLFWA 228 (538)
Q Consensus 155 ~~l~~~l~~~g~~l~~~~G~~~~vgigG~~~gGg~g~~~~~~G~~~D~v~~~~vV~a~G~~~~~------~~~~~dLf~a 228 (538)
.+|.++|.++|+.+.+.+++...++|||.++++++|..+.+||...|+|+++++|++||++++. +..+.||+++
T Consensus 106 ~~l~~~l~~~G~~~p~~p~s~~~~tIGG~ia~~~~G~~~~~yG~~~d~v~~l~vV~~dG~i~~~~~~~~k~~~g~dl~~l 185 (459)
T COG0277 106 EDLEKALAPHGLFLPVDPSSSGTATIGGNIATNAGGLRSLRYGLTRDNVLGLRVVLPDGEILRLGRKLRKDNAGYDLTAL 185 (459)
T ss_pred HHHHHHHHHcCCccCCCccccccceEccchhcCCCCccceecccHHHheeEEEEEcCCceehhhcCcccCCCCCCCHHHh
Confidence 9999999999955444445545899999999999999999999999999999999999999931 2345899999
Q ss_pred hhhccCccEEEEEEEEEEeecCceEEEEEEecCh
Q 009297 229 IRGGGASFGVVLAYKINLVPVPETVTVFKVEKTL 262 (538)
Q Consensus 229 ~rG~~g~~Givt~~~~~~~p~~~~~~~~~~~~~~ 262 (538)
..|+.|+|||||++|+|++|.|+........+..
T Consensus 186 ~iGs~GtlGiit~~tl~l~p~~~~~~~~~~~~~~ 219 (459)
T COG0277 186 FVGSEGTLGIITEATLKLLPLPETKATAVAGFPS 219 (459)
T ss_pred cccCCccceEEEEEEEEeccCCchheEEEEeCCC
Confidence 9987799999999999999998765444444443
No 6
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=99.98 E-value=3.9e-31 Score=284.30 Aligned_cols=195 Identities=23% Similarity=0.285 Sum_probs=167.0
Q ss_pred CCCCccEEEEcCCHHHHHHHHHHHHhCCCcEEEEecCcCCCCCccccCCCeEEEEecCcccE-EEcCCCCeEEEeCCccH
Q 009297 76 STPKPVLIVAAMHESHVQAAIICAKKHNLQMKIRSGGHDYEGLSYVSNVPFFILDMFNLRSI-DVDIESETAWVQAGAIL 154 (538)
Q Consensus 76 ~~~~p~~vv~p~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~s~~~~~~g~vIdl~~l~~i-~~d~~~~~v~v~~G~~~ 154 (538)
....|.+|++|+|++||+++|++|+++++|+++||+||++.|.+. ...+|++|||++||+| ++|+++++|+||||+++
T Consensus 52 ~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~rG~Gt~~~gg~~-~~~~gividl~~ln~I~~id~~~~~v~VeaGv~~ 130 (499)
T PRK11230 52 YRTRPLLVVLPKQMEQVQALLAVCHRLRVPVVARGAGTGLSGGAL-PLEKGVLLVMARFNRILDINPVGRRARVQPGVRN 130 (499)
T ss_pred cCCCCCEEEeeCCHHHHHHHHHHHHHcCCeEEEECCCcCcCCCcc-cCCCcEEEEcccCCCceEEcCCCCEEEEcCCccH
Confidence 456899999999999999999999999999999999999987653 3346899999999998 99999999999999999
Q ss_pred HHHHHHHHHhCCccccCCCCCCccccccccccCCcCCCccccCccccceeEEEEEecCCeEEecc-----CCCchhhhhh
Q 009297 155 GEVFYRIAEKSKTHGFPAGVCPTVGVGGHFSAGGYGNMMRKYGLSVDNIVDAKLVDVNGRILDRN-----SMGEDLFWAI 229 (538)
Q Consensus 155 ~~l~~~l~~~g~~l~~~~G~~~~vgigG~~~gGg~g~~~~~~G~~~D~v~~~~vV~a~G~~~~~~-----~~~~dLf~a~ 229 (538)
.+|.++|.++|+.+...+++...++|||.+++++.|+.+.+||...|+|+++|||++||++++.. ..++||+|++
T Consensus 131 ~~L~~~l~~~Gl~~~~~p~s~~~~tvGG~ia~nagG~~~~~yG~~~d~v~~levVl~~G~i~~~~~~~~~~~g~dl~~l~ 210 (499)
T PRK11230 131 LAISQAAAPHGLYYAPDPSSQIACSIGGNVAENAGGVHCLKYGLTVHNLLKVEILTLDGEALTLGSDALDSPGFDLLALF 210 (499)
T ss_pred HHHHHHHHHcCCeeCCCCCccccceEcceeccCCCCccceeeCChhhheeEEEEEcCCCcEEEeCCccCCCCccchHhhh
Confidence 99999999999543333455567889999999999999999999999999999999999999532 3478999999
Q ss_pred hhccCccEEEEEEEEEEeecCceEEEEEEecChhhHHHHHHH
Q 009297 230 RGGGASFGVVLAYKINLVPVPETVTVFKVEKTLEQDATDAVD 271 (538)
Q Consensus 230 rG~~g~~Givt~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 271 (538)
+|+.|+|||||++|||++|.|+....+.+.++..+.+.+++.
T Consensus 211 ~Gs~GtlGIIt~atlkl~p~p~~~~~~~~~f~~~~~a~~~~~ 252 (499)
T PRK11230 211 TGSEGMLGVVTEVTVKLLPKPPVARVLLASFDSVEKAGLAVG 252 (499)
T ss_pred ccCCCccEEEEEEEEEEEcCCcceEEEEEECCCHHHHHHHHH
Confidence 988899999999999999999866555565654333444433
No 7
>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase. This model represents an uncharacterized plant-specific family of FAD-dependent oxidoreductases. At least seven distinct members are found in Arabidopsis thaliana. The family shows considerable sequence similarity to three different enzymes of ascorbic acid biosynthesis: L-galactono-1,4-lactone dehydrogenase (EC 1.3.2.3) from higher plants, D-arabinono-1,4-lactone oxidase (EC 1.1.3.37 from Saccharomyces cerevisiae, and L-gulonolactone oxidase (EC 1.1.3.8) from mouse, as well as to a bacterial sorbitol oxidase. The class of compound acted on by members of this family is unknown.
Probab=99.97 E-value=7.8e-31 Score=282.84 Aligned_cols=179 Identities=19% Similarity=0.221 Sum_probs=158.1
Q ss_pred cCCCCCCCccEEEEcCCHHHHHHHHHHHHhCCCcEEEEe-cCcCCCCCccccC-CCeEEEEecCccc-EEEcCCCCeEEE
Q 009297 72 FNTSSTPKPVLIVAAMHESHVQAAIICAKKHNLQMKIRS-GGHDYEGLSYVSN-VPFFILDMFNLRS-IDVDIESETAWV 148 (538)
Q Consensus 72 ~~~~~~~~p~~vv~p~s~~dv~~~v~~a~~~~~~~~~~g-gGh~~~g~s~~~~-~~g~vIdl~~l~~-i~~d~~~~~v~v 148 (538)
|+.+....|.+|++|+|++||+++|++|+++++||.++| +||++.+.+.... .+|++|||++||+ +++|.++++|+|
T Consensus 24 Wag~~~~~p~~vv~P~s~eeV~~iV~~A~~~g~~v~v~GG~gHs~~~~a~t~~~~ggvvIdL~~Ln~il~iD~~~~tVtV 103 (557)
T TIGR01677 24 FPDRSTCRAANVAYPKTEAELVSVVAAATAAGRKMKVVTRYSHSIPKLACPDGSDGALLISTKRLNHVVAVDATAMTVTV 103 (557)
T ss_pred cCCcccCCCCEEEecCCHHHHHHHHHHHHHCCCeEEEEeCCCCCcCcccccCCCCCEEEEEcccCCCCEEEeCCCCEEEE
Confidence 999999999999999999999999999999999999996 6999887643322 2369999999999 599999999999
Q ss_pred eCCccHHHHHHHHHHhCCccccCC-CCCCccccccccccCCcCCCc-cccCccccceeEEEEEecCC------eEE-ecc
Q 009297 149 QAGAILGEVFYRIAEKSKTHGFPA-GVCPTVGVGGHFSAGGYGNMM-RKYGLSVDNIVDAKLVDVNG------RIL-DRN 219 (538)
Q Consensus 149 ~~G~~~~~l~~~l~~~g~~l~~~~-G~~~~vgigG~~~gGg~g~~~-~~~G~~~D~v~~~~vV~a~G------~~~-~~~ 219 (538)
+||+++.+|.+.|.++| ++++. +.+..++|||.+++|+||... +.||..+|+|++++||++|| +++ .+.
T Consensus 104 ~AG~~l~~L~~~L~~~G--lal~~~~~~~~~TVGGaiatGthGs~~~~~~G~l~d~V~~l~vV~a~G~a~G~~~v~~~s~ 181 (557)
T TIGR01677 104 ESGMSLRELIVEAEKAG--LALPYAPYWWGLTVGGMMGTGAHGSSLWGKGSAVHDYVVGIRLVVPASAAEGFAKVRILSE 181 (557)
T ss_pred CCCCcHHHHHHHHHHcC--CEeccCCCCCCeEeeEhhhCCCCCccccccccchhheEEEEEEEeCCCcccCcceEEEeCC
Confidence 99999999999999999 55554 455678999999999999765 68999999999999999998 777 455
Q ss_pred CCCchhhhhhhhccCccEEEEEEEEEEeecCce
Q 009297 220 SMGEDLFWAIRGGGASFGVVLAYKINLVPVPET 252 (538)
Q Consensus 220 ~~~~dLf~a~rG~~g~~Givt~~~~~~~p~~~~ 252 (538)
.+|+|||||+|||.|+|||||++|||++|.+..
T Consensus 182 ~~~~dLf~a~rgslG~lGVVtevTL~~~P~~~~ 214 (557)
T TIGR01677 182 GDTPNEFNAAKVSLGVLGVISQVTLALQPMFKR 214 (557)
T ss_pred CCCHHHHHhhccCCCccEeeeEEEEEEEccccc
Confidence 578999999998889999999999999998763
No 8
>TIGR01679 bact_FAD_ox FAD-linked oxidoreductase. This model represents a family of bacterial oxidoreductases with covalently linked FAD, closely related to two different eukaryotic oxidases, L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae.
Probab=99.97 E-value=7.7e-31 Score=277.17 Aligned_cols=172 Identities=23% Similarity=0.366 Sum_probs=153.9
Q ss_pred cCCCCCCCccEEEEcCCHHHHHHHHHHHHhCCCcEEEEecCcCCCCCccccCCCeEEEEecCcccE-EEcCCCCeEEEeC
Q 009297 72 FNTSSTPKPVLIVAAMHESHVQAAIICAKKHNLQMKIRSGGHDYEGLSYVSNVPFFILDMFNLRSI-DVDIESETAWVQA 150 (538)
Q Consensus 72 ~~~~~~~~p~~vv~p~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~s~~~~~~g~vIdl~~l~~i-~~d~~~~~v~v~~ 150 (538)
|+......|.+|++|+|++||+++|++|++ ++.++|+|||+.+.+. .+|++|||++||+| ++|+++++|+|||
T Consensus 4 W~~~~~~~p~~v~~P~s~~ev~~~v~~a~~---~v~~~G~Ghs~~~~~~---~~g~~idl~~l~~i~~~d~~~~~v~v~a 77 (419)
T TIGR01679 4 WSGEQVAAPSAIVRPTDEGELADVIAQAAK---PVRAVGSGHSFTDLAC---TDGTMISLTGLQGVVDVDQPTGLATVEA 77 (419)
T ss_pred CCCCccCCCCeEECCCCHHHHHHHHHHhCC---CEEEEeCCCCCCCccc---CCCEEEEhhHcCCceeecCCCCEEEEcC
Confidence 888778899999999999999999999974 7999999999987642 24799999999998 9999999999999
Q ss_pred CccHHHHHHHHHHhCCccccC-CCCCCccccccccccCCcCCCccccCccccceeEEEEEecCCeEEe-ccCCCchhhhh
Q 009297 151 GAILGEVFYRIAEKSKTHGFP-AGVCPTVGVGGHFSAGGYGNMMRKYGLSVDNIVDAKLVDVNGRILD-RNSMGEDLFWA 228 (538)
Q Consensus 151 G~~~~~l~~~l~~~g~~l~~~-~G~~~~vgigG~~~gGg~g~~~~~~G~~~D~v~~~~vV~a~G~~~~-~~~~~~dLf~a 228 (538)
|+++.+|.+.|.++|+ .+| .|.+..++|||.+++|+||. +..||..+|+|++++||++||++++ +..+|+|||||
T Consensus 78 G~~l~~l~~~L~~~G~--~l~~~~~~~~~tvGG~ia~~~hG~-g~~~G~~~d~V~~l~vV~a~G~v~~~~~~~~~dLf~a 154 (419)
T TIGR01679 78 GTRLGALGPQLAQRGL--GLENQGDIDPQSIGGALGTATHGT-GVRFQALHARIVSLRLVTAGGKVLDLSEGDDQDMYLA 154 (419)
T ss_pred CCCHHHHHHHHHHcCC--ccccCCCCCCceeccceecCCCCC-CccCCchhhhEEEEEEEcCCCCEEEEcCCCCHHHHHH
Confidence 9999999999999995 444 25556788999999999997 4689999999999999999999994 55678999999
Q ss_pred hhhccCccEEEEEEEEEEeecCce
Q 009297 229 IRGGGASFGVVLAYKINLVPVPET 252 (538)
Q Consensus 229 ~rG~~g~~Givt~~~~~~~p~~~~ 252 (538)
+|||+|+|||||++|||++|..+.
T Consensus 155 ~~g~~G~lGVIt~vtl~~~p~~~~ 178 (419)
T TIGR01679 155 ARVSLGALGVISQVTLQTVALFRL 178 (419)
T ss_pred HHhCCCceEEEEEEEEEeecceEe
Confidence 999889999999999999998753
No 9
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional
Probab=99.97 E-value=1.8e-29 Score=258.19 Aligned_cols=170 Identities=23% Similarity=0.303 Sum_probs=147.3
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEecCc-CCCCCccccCCCeEEEEecCcccE-EEcCCCCeEEEeCCccHHHHHHHHHHhC
Q 009297 88 HESHVQAAIICAKKHNLQMKIRSGGH-DYEGLSYVSNVPFFILDMFNLRSI-DVDIESETAWVQAGAILGEVFYRIAEKS 165 (538)
Q Consensus 88 s~~dv~~~v~~a~~~~~~~~~~ggGh-~~~g~s~~~~~~g~vIdl~~l~~i-~~d~~~~~v~v~~G~~~~~l~~~l~~~g 165 (538)
.++||+++|++|+++++|+.++|||| ++.|.+ . .+++|||++||+| ++|+++.+|+|++|+++.||.++|.++|
T Consensus 3 ~~~ev~~~v~~A~~~~~~v~~~GgGt~~~~g~~--~--~~~vldl~~ln~Ile~d~~~~~vtV~AG~~l~el~~~L~~~G 78 (352)
T PRK11282 3 ISAALLERVRQAAADGTPLRIRGGGSKDFYGRA--L--AGEVLDTRAHRGIVSYDPTELVITARAGTPLAELEAALAEAG 78 (352)
T ss_pred hHHHHHHHHHHHHHCCCeEEEECCCCCCCCCCC--C--CCeEEEcccCCCcEEEcCCCCEEEECCCCCHHHHHHHHHHcC
Confidence 47899999999999999999999997 466653 1 3579999999998 9999999999999999999999999999
Q ss_pred CccccCC-CCCCccccccccccCCcCCCccccCccccceeEEEEEecCCeEEe------ccCCCchhhhhhhhccCccEE
Q 009297 166 KTHGFPA-GVCPTVGVGGHFSAGGYGNMMRKYGLSVDNIVDAKLVDVNGRILD------RNSMGEDLFWAIRGGGASFGV 238 (538)
Q Consensus 166 ~~l~~~~-G~~~~vgigG~~~gGg~g~~~~~~G~~~D~v~~~~vV~a~G~~~~------~~~~~~dLf~a~rG~~g~~Gi 238 (538)
+.+.+.+ ..+...+|||++++|++|+.+.+||..+|+|+++++|++||++++ ++..++||||+++|+.|+|||
T Consensus 79 ~~lp~~p~~~~~~~TIGG~iatg~~G~~~~~yG~~~D~Vlg~~vV~~~Gei~~~gg~v~kn~~G~DL~~l~~Gs~GtLGV 158 (352)
T PRK11282 79 QMLPFEPPHFGGGATLGGMVAAGLSGPRRPWAGAVRDFVLGTRLINGRGEHLRFGGQVMKNVAGYDVSRLMAGSLGTLGV 158 (352)
T ss_pred CeeCCCCCCcCCCcEehhHHhcCCCCccccccCCHHHhEeeEEEEcCCceEEEeCCcccCCCCCchHHHHHhhCCchhhh
Confidence 6555534 345568999999999999999999999999999999999999994 233578999999988899999
Q ss_pred EEEEEEEEeecCceEEEEEEecC
Q 009297 239 VLAYKINLVPVPETVTVFKVEKT 261 (538)
Q Consensus 239 vt~~~~~~~p~~~~~~~~~~~~~ 261 (538)
||++|||++|.|+....+.+.++
T Consensus 159 itevtlkl~P~p~~~~t~~~~~~ 181 (352)
T PRK11282 159 LLEVSLKVLPRPRAELTLRLEMD 181 (352)
T ss_pred heEEEEEEEecCceEEEEEEecC
Confidence 99999999999986555444443
No 10
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=99.97 E-value=1.9e-29 Score=266.85 Aligned_cols=189 Identities=22% Similarity=0.270 Sum_probs=160.8
Q ss_pred EEEcCCHHHHHHHHHHHHhCCCcEEEEecCcCCCCCccccCCCeEEEEecCcccE-EEcCCCCeEEEeCCccHHHHHHHH
Q 009297 83 IVAAMHESHVQAAIICAKKHNLQMKIRSGGHDYEGLSYVSNVPFFILDMFNLRSI-DVDIESETAWVQAGAILGEVFYRI 161 (538)
Q Consensus 83 vv~p~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~s~~~~~~g~vIdl~~l~~i-~~d~~~~~v~v~~G~~~~~l~~~l 161 (538)
|++|+|++||+++|++|+++++|+.++|+|||+.|.+.. ..++++|||++||+| ++|+++.+++||||+++.+|.++|
T Consensus 1 Vv~P~s~eev~~iv~~a~~~~i~v~~~G~Gt~~~g~~~~-~~~~vvidl~~mn~i~~id~~~~~v~veaGv~~~~l~~~l 79 (413)
T TIGR00387 1 VVFPKNTEQVARILKLCHEHRIPIVPRGAGTGLSGGALP-EEGGLVLVFKHMNKILEIDVVNLTAVVQPGVRNLELEQAV 79 (413)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCcEEEECCCCCCCCCccC-CCCeEEEEhHHcCceeEEcCCCCEEEEcCCccHHHHHHHH
Confidence 578999999999999999999999999999999876543 346899999999998 999999999999999999999999
Q ss_pred HHhCCccccCCCCCCccccccccccCCcCCCccccCccccceeEEEEEecCCeEEec------cCCCchhhhhhhhccCc
Q 009297 162 AEKSKTHGFPAGVCPTVGVGGHFSAGGYGNMMRKYGLSVDNIVDAKLVDVNGRILDR------NSMGEDLFWAIRGGGAS 235 (538)
Q Consensus 162 ~~~g~~l~~~~G~~~~vgigG~~~gGg~g~~~~~~G~~~D~v~~~~vV~a~G~~~~~------~~~~~dLf~a~rG~~g~ 235 (538)
.++|+.+.+.+++...++|||.+++++.|..+.+||...|+|++++||++||++++. ...++||+|.+.|+.|+
T Consensus 80 ~~~gl~~~~~p~s~~~~tiGG~ia~na~G~~~~~yG~~~d~v~~l~vV~~~G~~~~~~~~~~~~~~g~dl~~l~~Gs~Gt 159 (413)
T TIGR00387 80 EEHNLFYPPDPSSQISSTIGGNIAENAGGMRGLKYGTTVDYVLGLEVVTADGEILRIGGKTAKDVAGYDLTGLFVGSEGT 159 (413)
T ss_pred HHcCCeeCCCCcccccceehhhhhcCCCCCcceeeccHHhheeeEEEEeCCCCEEEeCCcccCCCCCCChhhhcccCCcc
Confidence 999954333345556678999999999999999999999999999999999999942 33468999999988899
Q ss_pred cEEEEEEEEEEeecCceEEEEEEecChhhHHHHHHHH
Q 009297 236 FGVVLAYKINLVPVPETVTVFKVEKTLEQDATDAVDK 272 (538)
Q Consensus 236 ~Givt~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 272 (538)
|||||+++||++|.|+......+.+...+.+.+++..
T Consensus 160 lGiit~~~lkl~p~p~~~~~~~~~f~~~~~~~~~~~~ 196 (413)
T TIGR00387 160 LGIVTEATLKLLPKPENIVVALAFFDSIEKAMQAVYD 196 (413)
T ss_pred ceEEEEEEEEeecCCCccEEEEEECCCHHHHHHHHHH
Confidence 9999999999999998665555556544444444433
No 11
>KOG1231 consensus Proteins containing the FAD binding domain [Energy production and conversion]
Probab=99.96 E-value=6.5e-28 Score=242.36 Aligned_cols=174 Identities=21% Similarity=0.340 Sum_probs=150.0
Q ss_pred CCCCccEEEEcCCHHHHHHHHHHHHhC--CCcEEEEecCcCCCCCccccCCCeEEEEec---CcccE-EEcCCCCeEEEe
Q 009297 76 STPKPVLIVAAMHESHVQAAIICAKKH--NLQMKIRSGGHDYEGLSYVSNVPFFILDMF---NLRSI-DVDIESETAWVQ 149 (538)
Q Consensus 76 ~~~~p~~vv~p~s~~dv~~~v~~a~~~--~~~~~~~ggGh~~~g~s~~~~~~g~vIdl~---~l~~i-~~d~~~~~v~v~ 149 (538)
.+..|.+|..|+|++||++++|.|... ++||++||+|||..|++.. ..+|++|.|+ .|+++ .+..++..|.|.
T Consensus 60 ~~~~P~aVL~P~S~edVs~ilk~~~~~~s~~pVaarG~GhSl~Gqa~a-~~~GvvV~m~~~~~~~~~~~~~~~~~yvdV~ 138 (505)
T KOG1231|consen 60 TQLPPLAVLFPSSVEDVSKILKHCNDYGSNFPVAARGGGHSLEGQALA-TRGGVVVCMDSSLLMKDVPVLVVDDLYVDVS 138 (505)
T ss_pred CCCCCeeEEcCCCHHHHHHHHHHHhccCCcceeeccCCcccccCcccc-CCCCeEEEEehhhccCCCceeecccceEEee
Confidence 447999999999999999999999999 8999999999999999754 3467776554 45665 566677999999
Q ss_pred CCccHHHHHHHHHHhCCccccCCCCCCccccccccccCCcCCCccccCccccceeEEEEEecCCeEE-eccCCCchhhhh
Q 009297 150 AGAILGEVFYRIAEKSKTHGFPAGVCPTVGVGGHFSAGGYGNMMRKYGLSVDNIVDAKLVDVNGRIL-DRNSMGEDLFWA 228 (538)
Q Consensus 150 ~G~~~~~l~~~l~~~g~~l~~~~G~~~~vgigG~~~gGg~g~~~~~~G~~~D~v~~~~vV~a~G~~~-~~~~~~~dLf~a 228 (538)
||..|-+|.+++.++|..-..+.-. ...+|||+++.+|+|.++.+||...+||++++||+++|+++ ++...|++||.+
T Consensus 139 ~g~~Widll~~t~e~GL~p~swtDy-l~ltVGGtlsnagiggqafRyGpqi~NV~~LdVVtgkGeiv~cs~r~n~~lf~~ 217 (505)
T KOG1231|consen 139 AGTLWIDLLDYTLEYGLSPFSWTDY-LPLTVGGTLSNAGIGGQAFRYGPQISNVIELDVVTGKGEIVTCSKRANSNLFFL 217 (505)
T ss_pred CChhHHHHHHHHHHcCCCccCcCCc-cceeecceeccCccccceeeccchhhceEEEEEEcCCCcEEecccccCceeeee
Confidence 9999999999999999410122222 23789999999999999999999999999999999999999 567789999999
Q ss_pred hhhccCccEEEEEEEEEEeecCc
Q 009297 229 IRGGGASFGVVLAYKINLVPVPE 251 (538)
Q Consensus 229 ~rG~~g~~Givt~~~~~~~p~~~ 251 (538)
+.||-|+|||||+++++++|+|+
T Consensus 218 vlGglGqfGIITrArI~le~aP~ 240 (505)
T KOG1231|consen 218 VLGGLGQFGIITRARIKLEPAPK 240 (505)
T ss_pred eeccCcceeeEEEEEEEeccCCc
Confidence 99888999999999999999994
No 12
>PLN02465 L-galactono-1,4-lactone dehydrogenase
Probab=99.96 E-value=3.1e-28 Score=261.18 Aligned_cols=176 Identities=17% Similarity=0.215 Sum_probs=157.5
Q ss_pred ccCCCCCCCccEEEEcCCHHHHHHHHHHHHhCCCcEEEEecCcCCCCCccccCCCeEEEEecCcccE-EEcCCCCeEEEe
Q 009297 71 RFNTSSTPKPVLIVAAMHESHVQAAIICAKKHNLQMKIRSGGHDYEGLSYVSNVPFFILDMFNLRSI-DVDIESETAWVQ 149 (538)
Q Consensus 71 r~~~~~~~~p~~vv~p~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~s~~~~~~g~vIdl~~l~~i-~~d~~~~~v~v~ 149 (538)
+|+.+..+.|.+++.|+|++||+++|++|+++++||.++|+|||+.+.+.. ++.+|||++||+| ++|.++++|+|+
T Consensus 88 NWsg~~~~~p~~vv~P~S~eEV~~iV~~A~~~g~~VrvvGsGhS~~~l~~t---d~glIdL~~l~~Il~vD~e~~~VtV~ 164 (573)
T PLN02465 88 NWSGTHEVQTRRYHQPESLEELEDIVKEAHEKGRRIRPVGSGLSPNGLAFS---REGMVNLALMDKVLEVDKEKKRVTVQ 164 (573)
T ss_pred ccccccCCCCCEEEEeCCHHHHHHHHHHHHHcCCcEEEEcCCcCCCCeeeC---CCEEEECcCCCCcEEEeCCCCEEEEc
Confidence 498889999999999999999999999999999999999999999877532 3457999999997 999999999999
Q ss_pred CCccHHHHHHHHHHhCCccccCC-CCCCccccccccccCCcCCCccccCccccceeEEEEEecCCeEE-eccCCCchhhh
Q 009297 150 AGAILGEVFYRIAEKSKTHGFPA-GVCPTVGVGGHFSAGGYGNMMRKYGLSVDNIVDAKLVDVNGRIL-DRNSMGEDLFW 227 (538)
Q Consensus 150 ~G~~~~~l~~~l~~~g~~l~~~~-G~~~~vgigG~~~gGg~g~~~~~~G~~~D~v~~~~vV~a~G~~~-~~~~~~~dLf~ 227 (538)
||+++.+|.+.|.++| ++++. |.....+|||.+++|+||... .+|..+|+|++++||+++|+++ .+..+++||||
T Consensus 165 AG~~l~~L~~~L~~~G--Lal~n~g~I~~~TIGGaIstGtHGtG~-~~g~i~d~V~~l~lVta~G~vv~~s~~~~pdLF~ 241 (573)
T PLN02465 165 AGARVQQVVEALRPHG--LTLQNYASIREQQIGGFIQVGAHGTGA-RIPPIDEQVVSMKLVTPAKGTIELSKEDDPELFR 241 (573)
T ss_pred cCCCHHHHHHHHHHcC--CEeccCCCCCCeeecchhhCCCCCcCC-CcCcHhheEEEEEEEECCCCEEEECCCCCHHHHh
Confidence 9999999999999999 55553 566678999999999999854 6899999999999999999988 45556899999
Q ss_pred hhhhccCccEEEEEEEEEEeecCce
Q 009297 228 AIRGGGASFGVVLAYKINLVPVPET 252 (538)
Q Consensus 228 a~rG~~g~~Givt~~~~~~~p~~~~ 252 (538)
+.|++.|.|||||++|||++|..+.
T Consensus 242 aar~glG~lGVIteVTLql~P~~~L 266 (573)
T PLN02465 242 LARCGLGGLGVVAEVTLQCVPAHRL 266 (573)
T ss_pred HhhccCCCCcEEEEEEEEEEecCce
Confidence 9998889999999999999999864
No 13
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. One of the enzymes Vanillyl-alcohol oxidase (VAO, 1.1.3.38 from EC) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110 []. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyses the oxidation of a wide variety of substrates, ranging from aromatic amines to 4-alkylphenols. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZR6_A 3HSU_A 2AXR_A 3D2J_A 3D2H_A 3FW9_A 3FW8_A 3FW7_A 3GSY_A 3FWA_A ....
Probab=99.94 E-value=2.5e-26 Score=206.80 Aligned_cols=136 Identities=27% Similarity=0.471 Sum_probs=124.6
Q ss_pred ccEEEEcCCHHHHHHHHHHHHhCCCcEEEEecCcCCCCCccccCCCeEEEEecCccc-EEEcCCCCeEEEeCCccHHHHH
Q 009297 80 PVLIVAAMHESHVQAAIICAKKHNLQMKIRSGGHDYEGLSYVSNVPFFILDMFNLRS-IDVDIESETAWVQAGAILGEVF 158 (538)
Q Consensus 80 p~~vv~p~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~s~~~~~~g~vIdl~~l~~-i~~d~~~~~v~v~~G~~~~~l~ 158 (538)
|.+|++|++++||+++|++|+++++|+.++|+||++.+.+. ..++++|||++||+ +++|+++++++|++|++|.||+
T Consensus 1 P~~vv~P~s~~ev~~~v~~a~~~~~~v~~~g~G~~~~~~~~--~~~~ivi~~~~l~~i~~id~~~~~v~v~aG~~~~~l~ 78 (139)
T PF01565_consen 1 PAAVVRPKSVEEVQAIVKFANENGVPVRVRGGGHSWTGQSS--DEGGIVIDMSRLNKIIEIDPENGTVTVGAGVTWGDLY 78 (139)
T ss_dssp ESEEEEESSHHHHHHHHHHHHHTTSEEEEESSSTTSSSTTS--STTEEEEECTTCGCEEEEETTTTEEEEETTSBHHHHH
T ss_pred CcEEEEeCCHHHHHHHHHHHHHcCCcEEEEcCCCCcccccc--cCCcEEEeeccccccccccccceeEEEeccccchhcc
Confidence 78999999999999999999999999999999999997753 34689999999999 5999999999999999999999
Q ss_pred HHHHHhCCccccCCCCCCccccccccccCCcCCCccccCccccceeEEEEEecCCeEEe
Q 009297 159 YRIAEKSKTHGFPAGVCPTVGVGGHFSAGGYGNMMRKYGLSVDNIVDAKLVDVNGRILD 217 (538)
Q Consensus 159 ~~l~~~g~~l~~~~G~~~~vgigG~~~gGg~g~~~~~~G~~~D~v~~~~vV~a~G~~~~ 217 (538)
++|.++|..+.+.++.+..+++||++++|++|..++.||..+|+|+++++|++||++++
T Consensus 79 ~~l~~~g~~~~~~~~~~~~~tvGG~i~~~~~g~~~~~~G~~~d~v~~~~~V~~~G~v~~ 137 (139)
T PF01565_consen 79 EALAPRGLMLPVEPGSGIPGTVGGAIAGNGHGSGSRRYGTAADNVLSVEVVLADGEVVR 137 (139)
T ss_dssp HHHHHHTEEESSGGGSTTTSBHHHHHHTT-EETTHHHHCBGGGGEEEEEEEETTSSEEE
T ss_pred cccccccccccccccccccceEchhhcCCCccccccccccHHHeEEEEEEEcCCCcEEE
Confidence 99999995444447888889999999999999999999999999999999999999984
No 14
>PRK13905 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.91 E-value=4e-24 Score=216.19 Aligned_cols=161 Identities=20% Similarity=0.213 Sum_probs=140.6
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHhCCCcEEEEecCcCCCCCccccCCCeEEEEecC-cccEEEcCCCCeEEEeCCccHHH
Q 009297 78 PKPVLIVAAMHESHVQAAIICAKKHNLQMKIRSGGHDYEGLSYVSNVPFFILDMFN-LRSIDVDIESETAWVQAGAILGE 156 (538)
Q Consensus 78 ~~p~~vv~p~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~s~~~~~~g~vIdl~~-l~~i~~d~~~~~v~v~~G~~~~~ 156 (538)
..|.+++.|+|++||++++++|+++++|+.++|+|||.... ....+|++|||++ |+.|++ ++.+++|+||+.|.+
T Consensus 29 g~a~~vv~P~s~edv~~~v~~a~~~~~p~~v~GgGsnll~~--d~g~~gvvI~l~~~l~~i~~--~~~~v~v~aG~~~~~ 104 (298)
T PRK13905 29 GPADYLVEPADIEDLQEFLKLLKENNIPVTVLGNGSNLLVR--DGGIRGVVIRLGKGLNEIEV--EGNRITAGAGAPLIK 104 (298)
T ss_pred ceEeEEEeCCCHHHHHHHHHHHHHcCCCEEEEeCCceEEec--CCCcceEEEEecCCcceEEe--cCCEEEEECCCcHHH
Confidence 57899999999999999999999999999999999997643 1223489999998 999855 457899999999999
Q ss_pred HHHHHHHhCCccccCCCCCCccccccccccCCcCCCccccC-ccccceeEEEEEecCCeEEeccCCCchhhhhhhhcc-C
Q 009297 157 VFYRIAEKSKTHGFPAGVCPTVGVGGHFSAGGYGNMMRKYG-LSVDNIVDAKLVDVNGRILDRNSMGEDLFWAIRGGG-A 234 (538)
Q Consensus 157 l~~~l~~~g~~l~~~~G~~~~vgigG~~~gGg~g~~~~~~G-~~~D~v~~~~vV~a~G~~~~~~~~~~dLf~a~rG~~-g 234 (538)
|.++|.++| + .|.+..+|++|. .||+++++++.|| ..+|+|+++++|++||++++.. +.|++|++|++. +
T Consensus 105 L~~~l~~~G--l---~gle~~~gipGT-VGGai~~NaG~~G~~~~d~v~~v~vv~~~G~~~~~~--~~e~~~~yR~s~~~ 176 (298)
T PRK13905 105 LARFAAEAG--L---SGLEFAAGIPGT-VGGAVFMNAGAYGGETADVLESVEVLDRDGEIKTLS--NEELGFGYRHSALQ 176 (298)
T ss_pred HHHHHHHcC--C---CcchhccCCCcc-hhHHHHHcCCcCceEhheeEEEEEEEeCCCCEEEEE--HHHcCCcCccccCC
Confidence 999999998 4 588888999995 4899999999998 6899999999999999999643 369999999887 3
Q ss_pred -ccEEEEEEEEEEeecC
Q 009297 235 -SFGVVLAYKINLVPVP 250 (538)
Q Consensus 235 -~~Givt~~~~~~~p~~ 250 (538)
.+||||+++||++|..
T Consensus 177 ~~~gII~~~~l~l~~~~ 193 (298)
T PRK13905 177 EEGLIVLSATFQLEPGD 193 (298)
T ss_pred CCCEEEEEEEEEEcCCC
Confidence 4899999999999873
No 15
>PRK11183 D-lactate dehydrogenase; Provisional
Probab=99.89 E-value=1.7e-22 Score=212.16 Aligned_cols=194 Identities=12% Similarity=0.142 Sum_probs=157.7
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHHhCCCcEEEEecCcCCCCCccccCC----CeEEEEecCcccE-EEcCCCCeEEEeCC
Q 009297 77 TPKPVLIVAAMHESHVQAAIICAKKHNLQMKIRSGGHDYEGLSYVSNV----PFFILDMFNLRSI-DVDIESETAWVQAG 151 (538)
Q Consensus 77 ~~~p~~vv~p~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~s~~~~~----~g~vIdl~~l~~i-~~d~~~~~v~v~~G 151 (538)
...|.+||.|.|++||+++|++|+++++||++||||+++.|.+..... ++|+|||++||+| ++| ++.+++|+||
T Consensus 36 ~g~P~AVV~P~SteEVa~IVklC~e~~vPVIPRGgGTGLtGGAvP~~~~~dR~gVVIsl~RMNrIleID-~~~~VvVePG 114 (564)
T PRK11183 36 QGDALAVVFPGTLLELWRVLQACVAADKIIIMQAANTGLTGGSTPNGNDYDRDIVIISTLRLDKIQLLN-NGKQVLALPG 114 (564)
T ss_pred CCCCCEEEecCCHHHHHHHHHHHHHcCCeEEEeCCCcccccCcccCCCCCcCCEEEEEhhHcCCcEEEC-CCCeEEEeCC
Confidence 457999999999999999999999999999999999999988754322 3799999999999 788 5678999999
Q ss_pred ccHHHHHHHHHHhCCccccCCCC-CCccccccccccCCcCCCccccCccccceeEEEEEecCCeE-------Ee----c-
Q 009297 152 AILGEVFYRIAEKSKTHGFPAGV-CPTVGVGGHFSAGGYGNMMRKYGLSVDNIVDAKLVDVNGRI-------LD----R- 218 (538)
Q Consensus 152 ~~~~~l~~~l~~~g~~l~~~~G~-~~~vgigG~~~gGg~g~~~~~~G~~~D~v~~~~vV~a~G~~-------~~----~- 218 (538)
+++.+|.++|.++|.......|+ |-.++|||.++.+.-|....+||...++++. ++|++||++ +. .
T Consensus 115 Vtl~~LeeaLk~~Gl~p~sd~GSS~IGasIGGnIAtNAGG~~vlRgga~te~vL~-~~V~~dGel~lVn~lgi~lG~~~e 193 (564)
T PRK11183 115 TTLYQLEKALKPLGREPHSVIGSSCIGASVIGGICNNSGGALVQRGPAYTEMALY-AQIDEDGKLELVNHLGIDLGETPE 193 (564)
T ss_pred CcHHHHHHHHHHhCCCCCCcccccccCCCCccceEECCcchhheEcchhhhhhhh-hEECCCCcEEEeeccCcccCCCHH
Confidence 99999999999999532221233 3345788999999999999999999999999 999999999 31 0
Q ss_pred ------cCCCc----------------------------------hhhhhh--hhccCccEEEEEEEEEEeecCceEEEE
Q 009297 219 ------NSMGE----------------------------------DLFWAI--RGGGASFGVVLAYKINLVPVPETVTVF 256 (538)
Q Consensus 219 ------~~~~~----------------------------------dLf~a~--rG~~g~~Givt~~~~~~~p~~~~~~~~ 256 (538)
+..+. |+...+ .|+.|++||+ +++++++|.|+...+|
T Consensus 194 ~il~~l~~~gy~~~~~~~~~~~~~d~~y~~~vr~v~~~~parfnaDl~~LfeasGseGkLgV~-avrLdtfp~p~~~~vf 272 (564)
T PRK11183 194 EILTRLEDGRFDDEDVRHDGRHASDHEYAERVRDVDADTPARFNADPRRLFEASGCAGKLAVF-AVRLDTFPAEKNTQVF 272 (564)
T ss_pred HHHHhhhcCCCCccccCCccccCchhhHHHhhhccCCCCcccccCCHHHHhhccCCCceEEEE-EEEeccccCCCcceEE
Confidence 11233 776666 6666999999 9999999999987788
Q ss_pred EEecChhhHHHHHHHHH
Q 009297 257 KVEKTLEQDATDAVDKW 273 (538)
Q Consensus 257 ~~~~~~~~~~~~~~~~~ 273 (538)
.+.++..+.+.++.+..
T Consensus 273 ~ig~n~~~~~~~~rr~i 289 (564)
T PRK11183 273 YIGTNDPAVLTEIRRHI 289 (564)
T ss_pred EEeCCCHHHHHHHHHHH
Confidence 88777655555555443
No 16
>PRK12436 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.86 E-value=1.3e-21 Score=197.71 Aligned_cols=161 Identities=17% Similarity=0.178 Sum_probs=137.7
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHHhCCCcEEEEecCcCCCCCccccCCCeEEEEecCcccEEEcCCCCeEEEeCCccHHH
Q 009297 77 TPKPVLIVAAMHESHVQAAIICAKKHNLQMKIRSGGHDYEGLSYVSNVPFFILDMFNLRSIDVDIESETAWVQAGAILGE 156 (538)
Q Consensus 77 ~~~p~~vv~p~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~s~~~~~~g~vIdl~~l~~i~~d~~~~~v~v~~G~~~~~ 156 (538)
...|.+++.|+|++||++++++|+++++|+.++|+|||+... +...+|++|+|++|++|+++ +.+++|++|+.|.+
T Consensus 34 gg~a~~vv~p~~~edv~~~l~~a~~~~ip~~v~GgGSNll~~--d~g~~GvvI~l~~l~~i~~~--~~~v~v~aG~~~~~ 109 (305)
T PRK12436 34 GGKADVFVAPTNYDEIQEVIKYANKYNIPVTFLGNGSNVIIK--DGGIRGITVSLIHITGVTVT--GTTIVAQCGAAIID 109 (305)
T ss_pred CceEEEEEecCCHHHHHHHHHHHHHcCCCEEEEcCCeEEEEe--CCCeeEEEEEeCCcCcEEEe--CCEEEEEeCCcHHH
Confidence 356999999999999999999999999999999999998733 12224899999889999876 46899999999999
Q ss_pred HHHHHHHhCCccccCCCCCCccccccccccCCcCCCccccCc-cccceeEEEEEecCCeEEeccCCCchhhhhhhhcc--
Q 009297 157 VFYRIAEKSKTHGFPAGVCPTVGVGGHFSAGGYGNMMRKYGL-SVDNIVDAKLVDVNGRILDRNSMGEDLFWAIRGGG-- 233 (538)
Q Consensus 157 l~~~l~~~g~~l~~~~G~~~~vgigG~~~gGg~g~~~~~~G~-~~D~v~~~~vV~a~G~~~~~~~~~~dLf~a~rG~~-- 233 (538)
|.+++.++| | .|.+..+|++|.+ ||+.+++++.||. ..|.+.+++|+++||++++.+ +.|+.|+||.+.
T Consensus 110 L~~~~~~~g--l---~Gle~~~giPGtV-GGav~~NAGayG~~~~dvl~~v~vv~~~G~v~~~~--~~e~~f~YR~s~~~ 181 (305)
T PRK12436 110 VSRIALDHN--L---TGLEFACGIPGSV-GGALYMNAGAYGGEISFVLTEAVVMTGDGELRTLT--KEAFEFGYRKSVFA 181 (305)
T ss_pred HHHHHHHcC--C---ccchhhcCCccch-hHHHHhcCccchhehheeeeEEEEEeCCCCEEEEE--HHHhcCcCCCCcCC
Confidence 999999998 4 5777778888887 7888888899994 568888999999999999644 379999999886
Q ss_pred CccEEEEEEEEEEeec
Q 009297 234 ASFGVVLAYKINLVPV 249 (538)
Q Consensus 234 g~~Givt~~~~~~~p~ 249 (538)
.+..||++++||+.+.
T Consensus 182 ~~~~iil~a~~~l~~~ 197 (305)
T PRK12436 182 NNHYIILEARFELEEG 197 (305)
T ss_pred CCCEEEEEEEEEEcCC
Confidence 3468999999999865
No 17
>PRK14652 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.86 E-value=1.9e-21 Score=195.89 Aligned_cols=161 Identities=17% Similarity=0.165 Sum_probs=135.2
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHHhCCCcEEEEecCcCCCCCccccCCCeEEEEecC-cccEEEcCCCCeEEEeCCccHH
Q 009297 77 TPKPVLIVAAMHESHVQAAIICAKKHNLQMKIRSGGHDYEGLSYVSNVPFFILDMFN-LRSIDVDIESETAWVQAGAILG 155 (538)
Q Consensus 77 ~~~p~~vv~p~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~s~~~~~~g~vIdl~~-l~~i~~d~~~~~v~v~~G~~~~ 155 (538)
...|.+++.|+|++||++++++|+++++|+.++|||||.... +....|++|++++ ++.+.++ +.+++||||+.|.
T Consensus 33 gg~a~~~v~p~~~edl~~~v~~a~~~~ip~~vlGgGSNllv~--d~g~~gvVI~l~~~~~~i~~~--~~~v~v~AG~~~~ 108 (302)
T PRK14652 33 GGPADLLVRPADPDALSALLRAVRELGVPLSILGGGANTLVA--DAGVRGVVLRLPQDFPGESTD--GGRLVLGAGAPIS 108 (302)
T ss_pred CCcceEEEEcCCHHHHHHHHHHHHHCCCcEEEEcCCcceeec--CCCEeeEEEEecCCcceEEec--CCEEEEECCCcHH
Confidence 358899999999999999999999999999999999998633 1222389999976 5556543 4699999999999
Q ss_pred HHHHHHHHhCCccccCCCCCCccccccccccCCcCCCcc-ccCccccceeEEEEEecCCeEEeccCCCchhhhhhhhcc-
Q 009297 156 EVFYRIAEKSKTHGFPAGVCPTVGVGGHFSAGGYGNMMR-KYGLSVDNIVDAKLVDVNGRILDRNSMGEDLFWAIRGGG- 233 (538)
Q Consensus 156 ~l~~~l~~~g~~l~~~~G~~~~vgigG~~~gGg~g~~~~-~~G~~~D~v~~~~vV~a~G~~~~~~~~~~dLf~a~rG~~- 233 (538)
+|.+++.++| | .|.++.+||+|.+ ||+..++++ +||.++|+|+++++|++|| +.... ..|+.|+||++.
T Consensus 109 ~L~~~~~~~G--L---~GlE~l~gIPGTv-GGav~mNaGa~ggei~d~v~~v~vv~~~G-~~~~~--~~e~~f~YR~s~~ 179 (302)
T PRK14652 109 RLPARAHAHG--L---VGMEFLAGIPGTL-GGAVAMNAGTKLGEMKDVVTAVELATADG-AGFVP--AAALGYAYRTCRL 179 (302)
T ss_pred HHHHHHHHcC--C---cccccccCCCcch-hHHHHHcCCCCceEhhheEEEEEEECCCC-cEEee--hhhcCcccceecc
Confidence 9999999999 5 5999999999955 888888876 6677899999999999999 44322 379999999876
Q ss_pred CccEEEEEEEEEEeecC
Q 009297 234 ASFGVVLAYKINLVPVP 250 (538)
Q Consensus 234 g~~Givt~~~~~~~p~~ 250 (538)
+..||||+++||++|..
T Consensus 180 ~~~~II~~a~~~L~~~~ 196 (302)
T PRK14652 180 PPGAVITRVEVRLRPGD 196 (302)
T ss_pred CCCeEEEEEEEEEecCC
Confidence 54589999999999854
No 18
>TIGR00179 murB UDP-N-acetylenolpyruvoylglucosamine reductase. This model describes MurB, UDP-N-acetylenolpyruvoylglucosamine reductase, which is also called UDP-N-acetylmuramate dehydrogenase. It is part of the pathway for the biosynthesis of the UDP-N-acetylmuramoyl-pentapeptide that is a precursor of bacterial peptidoglycan.
Probab=99.86 E-value=2.5e-21 Score=193.99 Aligned_cols=160 Identities=18% Similarity=0.167 Sum_probs=140.6
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHhCCCcEEEEecCcCCCCCccccCCCeEEEEecCcccEEEcCCCCeEEEeCCccHHHH
Q 009297 78 PKPVLIVAAMHESHVQAAIICAKKHNLQMKIRSGGHDYEGLSYVSNVPFFILDMFNLRSIDVDIESETAWVQAGAILGEV 157 (538)
Q Consensus 78 ~~p~~vv~p~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~s~~~~~~g~vIdl~~l~~i~~d~~~~~v~v~~G~~~~~l 157 (538)
..|.+++.|+|++||++++++|+++++|+.++|||||+.... ...+|++|++++|+.+.+++ +.+++|+||+.|.+|
T Consensus 11 g~a~~~v~p~s~edl~~~l~~a~~~~~p~~vlGgGSNll~~d--~~~~gvvi~l~~~~~~~~~~-~~~v~v~aG~~~~~l 87 (284)
T TIGR00179 11 GNARHIVCPESIEQLVNVLDNAKEEDQPLLILGEGSNLLILD--DGRGGVIINLGKGIDIEDDE-GEYVHVGGGENWHKL 87 (284)
T ss_pred ceeeEEEEeCCHHHHHHHHHHHHHcCCCEEEEecceEEEEcc--CCcCeEEEECCCCceEEEec-CCEEEEEcCCcHHHH
Confidence 578899999999999999999999999999999999988663 33468999999999887766 579999999999999
Q ss_pred HHHHHHhCCccccCCCCCCccccccccccCCcCCCccccCcccc-ceeEEEEEecCCeEEeccCCCchhhhhhhhcc--C
Q 009297 158 FYRIAEKSKTHGFPAGVCPTVGVGGHFSAGGYGNMMRKYGLSVD-NIVDAKLVDVNGRILDRNSMGEDLFWAIRGGG--A 234 (538)
Q Consensus 158 ~~~l~~~g~~l~~~~G~~~~vgigG~~~gGg~g~~~~~~G~~~D-~v~~~~vV~a~G~~~~~~~~~~dLf~a~rG~~--g 234 (538)
.+++.++| | .|.+..+|++|. .||+++++++.||..++ .|+++++|++||++++.. +.|+.|+||.+. .
T Consensus 88 ~~~~~~~G--l---~GlE~l~giPGt-vGGai~mNAGayG~~i~d~l~~v~vv~~~G~~~~~~--~~~~~f~YR~S~f~~ 159 (284)
T TIGR00179 88 VKYALKNG--L---SGLEFLAGIPGT-VGGAVIMNAGAYGVEISEVLVYATILLATGKTEWLT--NEQLGFGYRTSIFQH 159 (284)
T ss_pred HHHHHHCC--C---cccccCCCCCch-HHHHHHHhcccchhehhheEEEEEEEeCCCCEEEEE--HHHccccCCccccCC
Confidence 99999998 5 699999999996 59999999999999875 689999999999998544 379999999876 3
Q ss_pred cc-EEEEEEEEEEee
Q 009297 235 SF-GVVLAYKINLVP 248 (538)
Q Consensus 235 ~~-Givt~~~~~~~p 248 (538)
.. .||++++|++.+
T Consensus 160 ~~~~iil~a~~~l~~ 174 (284)
T TIGR00179 160 KYVGLVLKAEFQLTL 174 (284)
T ss_pred CCcEEEEEEEEEecc
Confidence 33 699999999843
No 19
>PRK13906 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.85 E-value=6.7e-21 Score=192.46 Aligned_cols=160 Identities=18% Similarity=0.196 Sum_probs=138.8
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHhCCCcEEEEecCcCCCCCccccCCCeEEEEecCcccEEEcCCCCeEEEeCCccHHHH
Q 009297 78 PKPVLIVAAMHESHVQAAIICAKKHNLQMKIRSGGHDYEGLSYVSNVPFFILDMFNLRSIDVDIESETAWVQAGAILGEV 157 (538)
Q Consensus 78 ~~p~~vv~p~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~s~~~~~~g~vIdl~~l~~i~~d~~~~~v~v~~G~~~~~l 157 (538)
..+.+++.|+|++||++++++|+++++|+.++|+|||.... ....+|++|++++|++|+++. .+++||||+.|.+|
T Consensus 35 G~A~~~v~p~~~edv~~~v~~a~~~~ip~~vlGgGSNll~~--d~g~~GvvI~l~~l~~i~~~~--~~v~v~aG~~~~~l 110 (307)
T PRK13906 35 GNADFYITPTKNEEVQAVVKYAYQNEIPVTYLGNGSNIIIR--EGGIRGIVISLLSLDHIEVSD--DAIIAGSGAAIIDV 110 (307)
T ss_pred ceeEEEEEcCCHHHHHHHHHHHHHcCCCEEEEcCceeEeec--CCCcceEEEEecCccceEEeC--CEEEEECCCcHHHH
Confidence 46889999999999999999999999999999999998743 222358999998899998763 58999999999999
Q ss_pred HHHHHHhCCccccCCCCCCccccccccccCCcCCCccccC-ccccceeEEEEEecCCeEEeccCCCchhhhhhhhcc-C-
Q 009297 158 FYRIAEKSKTHGFPAGVCPTVGVGGHFSAGGYGNMMRKYG-LSVDNIVDAKLVDVNGRILDRNSMGEDLFWAIRGGG-A- 234 (538)
Q Consensus 158 ~~~l~~~g~~l~~~~G~~~~vgigG~~~gGg~g~~~~~~G-~~~D~v~~~~vV~a~G~~~~~~~~~~dLf~a~rG~~-g- 234 (538)
.+++.++| | .|.+..+||+|. .||+..++++.|| .++|+|+++++|++||++++.. ..|+.|+||.+. -
T Consensus 111 ~~~~~~~G--l---~GlE~~~gIPGt-VGGav~mNaGayGg~i~D~l~~v~vv~~~G~~~~~~--~~e~~f~YR~S~~~~ 182 (307)
T PRK13906 111 SRVARDYA--L---TGLEFACGIPGS-IGGAVYMNAGAYGGEVKDCIDYALCVNEQGSLIKLT--TKELELDYRNSIIQK 182 (307)
T ss_pred HHHHHHcC--C---ccchhhcCCCcc-HhHHHHhhCCcchhhhhhheeEEEEEeCCCCEEEEE--HHHccCcCCcccCCC
Confidence 99999998 4 688888999995 5999999999996 7899999999999999999643 378999999776 3
Q ss_pred ccEEEEEEEEEEeec
Q 009297 235 SFGVVLAYKINLVPV 249 (538)
Q Consensus 235 ~~Givt~~~~~~~p~ 249 (538)
.--||++++|++.|.
T Consensus 183 ~~~ii~~~~~~l~~~ 197 (307)
T PRK13906 183 EHLVVLEAAFTLAPG 197 (307)
T ss_pred CCEEEEEEEEEECCC
Confidence 345999999999863
No 20
>KOG4730 consensus D-arabinono-1, 4-lactone oxidase [Defense mechanisms]
Probab=99.85 E-value=1.6e-20 Score=189.30 Aligned_cols=182 Identities=20% Similarity=0.270 Sum_probs=155.4
Q ss_pred cCCCCCCCccEEEEcCCHHHHHHHHHHHHhCCCcEEEEecCcCCCCCccccCCCeEEEEecCcccE-EEcCCCCeEEEeC
Q 009297 72 FNTSSTPKPVLIVAAMHESHVQAAIICAKKHNLQMKIRSGGHDYEGLSYVSNVPFFILDMFNLRSI-DVDIESETAWVQA 150 (538)
Q Consensus 72 ~~~~~~~~p~~vv~p~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~s~~~~~~g~vIdl~~l~~i-~~d~~~~~v~v~~ 150 (538)
|.....++.+-|-+|+|++|+.++|+.|++++.++++.|.|||..+..+. +|.+|+++.||++ ++|++..++||++
T Consensus 42 fPdr~~c~aanv~yP~teaeL~~lVa~A~~a~~kirvVg~gHSp~~l~ct---dg~lisl~~lnkVv~~dpe~~tvTV~a 118 (518)
T KOG4730|consen 42 FPDRSTCKAANVNYPKTEAELVELVAAATEAGKKIRVVGSGHSPSKLVCT---DGLLISLDKLNKVVEFDPELKTVTVQA 118 (518)
T ss_pred cCchhhhhhcccCCCCCHHHHHHHHHHHHHcCceEEEecccCCCCcceec---cccEEEhhhhccceeeCchhceEEecc
Confidence 33444466777888999999999999999999999999999999887543 4589999999998 8999999999999
Q ss_pred CccHHHHHHHHHHhCCccccC-CCCCCccccccccccCCcCCCccccCccccceeEEEEEecCCeEE-eccCCCchhhhh
Q 009297 151 GAILGEVFYRIAEKSKTHGFP-AGVCPTVGVGGHFSAGGYGNMMRKYGLSVDNIVDAKLVDVNGRIL-DRNSMGEDLFWA 228 (538)
Q Consensus 151 G~~~~~l~~~l~~~g~~l~~~-~G~~~~vgigG~~~gGg~g~~~~~~G~~~D~v~~~~vV~a~G~~~-~~~~~~~dLf~a 228 (538)
|+++.+|.+++.+.| +++| .+.....+|||++..|.||..-.-|+......+...++.+||.++ .++..+||+|.|
T Consensus 119 GirlrQLie~~~~~G--lsL~~~~si~e~sVgGii~TGaHGSS~~vH~~v~~i~~v~~~~~~~G~v~~Ls~e~dpe~F~A 196 (518)
T KOG4730|consen 119 GIRLRQLIEELAKLG--LSLPNAPSISEQSVGGIISTGAHGSSLWVHDYVSEIISVSPITPADGFVVVLSEEKDPELFNA 196 (518)
T ss_pred CcCHHHHHHHHHhcC--ccccCCCceecceeeeEEecccCCCccccCcccceeEEEeeeccCCceEEEecccCCHHHHhh
Confidence 999999999999988 6666 477788899999999999987776777777777777778899766 456668999999
Q ss_pred hhhccCccEEEEEEEEEEeecCceEEEEEE
Q 009297 229 IRGGGASFGVVLAYKINLVPVPETVTVFKV 258 (538)
Q Consensus 229 ~rG~~g~~Givt~~~~~~~p~~~~~~~~~~ 258 (538)
.+-+-|.+|||.++||++.|.-+....+.+
T Consensus 197 AkvSLG~LGVIs~VTl~~vp~Fk~s~t~~v 226 (518)
T KOG4730|consen 197 AKVSLGVLGVISQVTLSVVPAFKRSLTYVV 226 (518)
T ss_pred hhhcccceeEEEEEEEEEEecceeeeEEEE
Confidence 997779999999999999998776555444
No 21
>PRK13903 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.84 E-value=2.4e-20 Score=191.16 Aligned_cols=162 Identities=20% Similarity=0.210 Sum_probs=140.7
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHhCCCcEEEEecCcCCCCCccccCCCeEEEEecCcccEEEcCCCCeEEEeCCccHHHH
Q 009297 78 PKPVLIVAAMHESHVQAAIICAKKHNLQMKIRSGGHDYEGLSYVSNVPFFILDMFNLRSIDVDIESETAWVQAGAILGEV 157 (538)
Q Consensus 78 ~~p~~vv~p~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~s~~~~~~g~vIdl~~l~~i~~d~~~~~v~v~~G~~~~~l 157 (538)
..+.+++.|+|++||++++++|+++++|+.++|+|||..-. +....|+||+++ +++++++.+..+++|++|+.|.+|
T Consensus 31 g~A~~~~~p~s~edl~~~l~~a~~~~~p~~vlGgGSNlLv~--D~g~~GvVI~l~-~~~i~i~~~~~~v~vgAG~~~~~l 107 (363)
T PRK13903 31 GPARRLVTCTSTEELVAAVRELDAAGEPLLVLGGGSNLVIA--DDGFDGTVVRVA-TRGVTVDCGGGLVRAEAGAVWDDV 107 (363)
T ss_pred ccceEEEEeCCHHHHHHHHHHHHHCCCCEEEEeCCeeEeEC--CCCccEEEEEeC-CCcEEEeCCCCEEEEEcCCCHHHH
Confidence 57889999999999999999999999999999999998733 222458999997 588988766679999999999999
Q ss_pred HHHHHHhCCccccCCCCCCccccccccccCCcCCCccccCcc-ccceeEEEEEecC-CeEEeccCCCchhhhhhhhcc--
Q 009297 158 FYRIAEKSKTHGFPAGVCPTVGVGGHFSAGGYGNMMRKYGLS-VDNIVDAKLVDVN-GRILDRNSMGEDLFWAIRGGG-- 233 (538)
Q Consensus 158 ~~~l~~~g~~l~~~~G~~~~vgigG~~~gGg~g~~~~~~G~~-~D~v~~~~vV~a~-G~~~~~~~~~~dLf~a~rG~~-- 233 (538)
.+++.++| | .|.+..+||+|.+ ||+.-++.+.||.. +|.|.++++++.+ |++++.. +.|++|+||++.
T Consensus 108 ~~~a~~~G--L---~GlE~laGIPGTV-GGAv~mNaGayG~ei~D~l~sV~vvd~~~G~~~~~~--~~el~f~YR~S~f~ 179 (363)
T PRK13903 108 VARTVEAG--L---GGLECLSGIPGSA-GATPVQNVGAYGQEVSDTITRVRLLDRRTGEVRWVP--AADLGFGYRTSVLK 179 (363)
T ss_pred HHHHHHcC--C---ccccccCCCCcch-hhHhhcCCChhHHHHhhhEeEEEEEECCCCEEEEEE--HHHcceeccccccC
Confidence 99999999 5 7999999999999 77777888889875 7999999999965 9988644 489999999874
Q ss_pred -CccEEEEEEEEEEeecC
Q 009297 234 -ASFGVVLAYKINLVPVP 250 (538)
Q Consensus 234 -g~~Givt~~~~~~~p~~ 250 (538)
++++|||+++||++|..
T Consensus 180 ~~~~~IIl~a~f~L~~~~ 197 (363)
T PRK13903 180 HSDRAVVLEVEFQLDPSG 197 (363)
T ss_pred CCCCEEEEEEEEEEEcCC
Confidence 34899999999999863
No 22
>PRK14649 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.81 E-value=6.7e-19 Score=177.12 Aligned_cols=163 Identities=19% Similarity=0.190 Sum_probs=135.1
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHhCCCcEEEEecCcCCCCCccccCCCeEEEEecCcc-cEEEcCCCCeEEEeCCccHHH
Q 009297 78 PKPVLIVAAMHESHVQAAIICAKKHNLQMKIRSGGHDYEGLSYVSNVPFFILDMFNLR-SIDVDIESETAWVQAGAILGE 156 (538)
Q Consensus 78 ~~p~~vv~p~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~s~~~~~~g~vIdl~~l~-~i~~d~~~~~v~v~~G~~~~~ 156 (538)
....+++.|+|++|+++++++|+++++|+.++|+|||+.... ...+|++|+++.++ .+..+.+..+++|+||+.|.+
T Consensus 19 g~a~~~v~p~~~~dl~~~l~~~~~~~ip~~vlG~GSNlL~~d--~g~~GvVI~l~~~~~~i~~~~~~~~v~v~AG~~~~~ 96 (295)
T PRK14649 19 GPARYFVEPTTPDEAIAAAAWAEQRQLPLFWLGGGSNLLVRD--EGFDGLVARYRGQRWELHEHGDTAEVWVEAGAPMAG 96 (295)
T ss_pred ceeeEEEEcCCHHHHHHHHHHHHHCCCCEEEEecceeEEEeC--CCcCeEEEEecCCCcEEEEeCCcEEEEEEcCCcHHH
Confidence 466789999999999999999999999999999999988662 33468999998754 666665555899999999999
Q ss_pred HHHHHHHhCCccccCCCCCCccccccccccCCcCCCccccCccccceeEEEEEecCCeEEeccCCCchhhhhhhhcc-Cc
Q 009297 157 VFYRIAEKSKTHGFPAGVCPTVGVGGHFSAGGYGNMMRKYGLSVDNIVDAKLVDVNGRILDRNSMGEDLFWAIRGGG-AS 235 (538)
Q Consensus 157 l~~~l~~~g~~l~~~~G~~~~vgigG~~~gGg~g~~~~~~G~~~D~v~~~~vV~a~G~~~~~~~~~~dLf~a~rG~~-g~ 235 (538)
|.+++.++| | .|.++.+||+|++.|..+++.+..++..+|.|.++++++.+|++++.. +.|++|+||.+. -.
T Consensus 97 l~~~~~~~G--L---~GlE~l~GIPGTvGGa~~mNaGayg~ei~d~l~~V~~~~~~g~~~~~~--~~el~f~YR~S~~~~ 169 (295)
T PRK14649 97 TARRLAAQG--W---AGLEWAEGLPGTIGGAIYGNAGCYGGDTATVLIRAWLLLNGSECVEWS--VHDFAYGYRTSVLKQ 169 (295)
T ss_pred HHHHHHHcC--C---ccccccCCCCcchhHHHHhhccccceEhheeEEEEEEEeCCCCEEEEe--HHHcCcccceeeccc
Confidence 999999999 5 788999999996644466655555567789999999999999988543 369999999775 32
Q ss_pred ---------cEEEEEEEEEEeec
Q 009297 236 ---------FGVVLAYKINLVPV 249 (538)
Q Consensus 236 ---------~Givt~~~~~~~p~ 249 (538)
--||++++|++.+.
T Consensus 170 ~~~~~~~~~~~ii~~~~~~l~~~ 192 (295)
T PRK14649 170 LRADGITWRPPLVLAARFRLHRD 192 (295)
T ss_pred ccccccccCCeEEEEEEEEECCC
Confidence 23999999999865
No 23
>KOG1232 consensus Proteins containing the FAD binding domain [Energy production and conversion]
Probab=99.80 E-value=1.5e-19 Score=178.05 Aligned_cols=185 Identities=23% Similarity=0.278 Sum_probs=163.6
Q ss_pred hccccCCCCCCCccEEEEcCCHHHHHHHHHHHHhCCCcEEEEecCcCCCCCccccCCCeEEEEecCcccE-EEcCCCCeE
Q 009297 68 RNLRFNTSSTPKPVLIVAAMHESHVQAAIICAKKHNLQMKIRSGGHDYEGLSYVSNVPFFILDMFNLRSI-DVDIESETA 146 (538)
Q Consensus 68 ~n~r~~~~~~~~p~~vv~p~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~s~~~~~~g~vIdl~~l~~i-~~d~~~~~v 146 (538)
+|.-|....+..-..|..|+|+++|++++++|+++++-|++.||-++..|.|. +..+.+||+|.+||+| ++|+-.+++
T Consensus 78 ~n~dwm~kyrG~sklvL~Pkst~eVS~ILkYCn~~kLAVVPQGGNTgLVGgSV-PvfDEiVlsl~~mNKi~sfDevsGil 156 (511)
T KOG1232|consen 78 FNTDWMKKYRGQSKLVLKPKSTEEVSAILKYCNDRKLAVVPQGGNTGLVGGSV-PVFDEIVLSLGLMNKILSFDEVSGIL 156 (511)
T ss_pred hhhHHHHhccCCceEEecCCCHHHHHHHHHhhccccEEEecCCCCcccccCcc-cchHHHhhhhhhhccccccccccceE
Confidence 35567666667888999999999999999999999999999999999888774 5556799999999999 899999999
Q ss_pred EEeCCccHHHHHHHHHHhCCccccCCCCCCccccccccccCCcCCCccccCccccceeEEEEEecCCeEEe------ccC
Q 009297 147 WVQAGAILGEVFYRIAEKSKTHGFPAGVCPTVGVGGHFSAGGYGNMMRKYGLSVDNIVDAKLVDVNGRILD------RNS 220 (538)
Q Consensus 147 ~v~~G~~~~~l~~~l~~~g~~l~~~~G~~~~vgigG~~~gGg~g~~~~~~G~~~D~v~~~~vV~a~G~~~~------~~~ 220 (538)
++.+|+.+.++..+|+++|+.+.+.-|.-.++-|||.++..+-|..--+||...-+|+++|+|+|+|+++. ++.
T Consensus 157 ~cdaG~ILen~d~~l~e~g~m~PlDLgAKgsCqiGG~vsTnAGGlrllRYGsLHgsvLGle~Vlp~G~vl~~~~slRKDN 236 (511)
T KOG1232|consen 157 KCDAGVILENADNFLAEKGYMFPLDLGAKGSCQIGGNVSTNAGGLRLLRYGSLHGSVLGLEVVLPNGTVLDLLSSLRKDN 236 (511)
T ss_pred EeccceEehhhHHHHHhcCceeeecCCCcccceecceeeccCCceEEEEecccccceeeeEEEcCCCchhhhhhhhcccC
Confidence 99999999999999999996555556777778899999999999989999999999999999999999993 345
Q ss_pred CCchhhhhhhhccCccEEEEEEEEEEeecCceE
Q 009297 221 MGEDLFWAIRGGGASFGVVLAYKINLVPVPETV 253 (538)
Q Consensus 221 ~~~dLf~a~rG~~g~~Givt~~~~~~~p~~~~~ 253 (538)
.+.|+-....|+.|++||||++++-+.|.|+.+
T Consensus 237 TgydlkhLFIGSEGtlGVvT~vSil~~~kpksv 269 (511)
T KOG1232|consen 237 TGYDLKHLFIGSEGTLGVVTKVSILAPPKPKSV 269 (511)
T ss_pred ccccchhheecCCceeeEEeeEEEeecCCCcce
Confidence 678888888987799999999999999988754
No 24
>KOG1233 consensus Alkyl-dihydroxyacetonephosphate synthase [General function prediction only]
Probab=99.80 E-value=9.2e-19 Score=172.68 Aligned_cols=190 Identities=24% Similarity=0.257 Sum_probs=158.3
Q ss_pred cCCCCCCCccEEEEcCCHHHHHHHHHHHHhCCCcEEEEecCcCCCCCccccCCC--eEE-EEecCcccE-EEcCCCCeEE
Q 009297 72 FNTSSTPKPVLIVAAMHESHVQAAIICAKKHNLQMKIRSGGHDYEGLSYVSNVP--FFI-LDMFNLRSI-DVDIESETAW 147 (538)
Q Consensus 72 ~~~~~~~~p~~vv~p~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~s~~~~~~--g~v-Idl~~l~~i-~~d~~~~~v~ 147 (538)
|-......|+.|+-|+..+||.++|+.|.+||+-+.+.|||+|..+.-.++... .++ +|++.||+| -+|.++-+++
T Consensus 153 regkf~RiPDiVvWP~chdevVkiv~lA~khN~~iiPiGGGTSVs~al~cP~~E~R~iislDtsqmnriLWidreNLT~~ 232 (613)
T KOG1233|consen 153 REGKFPRIPDIVVWPKCHDEVVKIVELAMKHNCAIIPIGGGTSVSNALDCPETEKRAIISLDTSQMNRILWIDRENLTCR 232 (613)
T ss_pred hcCccCCCCceEecccchHHHHHHHHHHhhcCeEEEEeCCcccccccccCCcccceeEEEecHHhhhheeEeccccceEE
Confidence 445567899999999999999999999999999999999999977554333221 333 899999998 7999999999
Q ss_pred EeCCccHHHHHHHHHHhCCccccCCCCCCccccccccccCCcCCCccccCccccceeEEEEEecCCeEEe-----ccCCC
Q 009297 148 VQAGAILGEVFYRIAEKSKTHGFPAGVCPTVGVGGHFSAGGYGNMMRKYGLSVDNIVDAKLVDVNGRILD-----RNSMG 222 (538)
Q Consensus 148 v~~G~~~~~l~~~l~~~g~~l~~~~G~~~~vgigG~~~gGg~g~~~~~~G~~~D~v~~~~vV~a~G~~~~-----~~~~~ 222 (538)
+++|+.-.+|.+.|.+.|+..+-.+.+..-.++||+++..+.|+--..||.+-|-|+-+++|++.|.+.. .-+.+
T Consensus 233 ~eaGIvGQ~LERqL~~~G~t~GHEPDS~EFSTlGGWVsTRASGMKKN~YGNIEDLVVh~~mVtP~Giiek~Cq~PRmS~G 312 (613)
T KOG1233|consen 233 AEAGIVGQSLERQLNKKGFTCGHEPDSIEFSTLGGWVSTRASGMKKNKYGNIEDLVVHLNMVTPKGIIEKQCQVPRMSSG 312 (613)
T ss_pred EecCcchHHHHHHHhhcCcccCCCCCceeeecccceeeeccccccccccCChhHheEEEEeecCcchhhhhhcCCcccCC
Confidence 9999999999999999984322222333345899999999999999999999999999999999998872 12458
Q ss_pred chhhhhhhhccCccEEEEEEEEEEeecCceEEEEEEecC
Q 009297 223 EDLFWAIRGGGASFGVVLAYKINLVPVPETVTVFKVEKT 261 (538)
Q Consensus 223 ~dLf~a~rG~~g~~Givt~~~~~~~p~~~~~~~~~~~~~ 261 (538)
||+-.-+.|+.|++||||++++|+.|+|+....-.+.|+
T Consensus 313 PDihh~IlGSEGTLGVitEvtiKirPiPe~~ryGS~aFP 351 (613)
T KOG1233|consen 313 PDIHHIILGSEGTLGVITEVTIKIRPIPEVKRYGSFAFP 351 (613)
T ss_pred CCcceEEeccCcceeEEEEEEEEEeechhhhhcCccccC
Confidence 999999997779999999999999999986555455554
No 25
>PRK14653 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.73 E-value=2.4e-17 Score=165.28 Aligned_cols=159 Identities=18% Similarity=0.204 Sum_probs=137.6
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHhCCCcEEEEecCcCCCCCccccCCCeEEEEecCcccEEEcCCCCeEEEeCCccHHHH
Q 009297 78 PKPVLIVAAMHESHVQAAIICAKKHNLQMKIRSGGHDYEGLSYVSNVPFFILDMFNLRSIDVDIESETAWVQAGAILGEV 157 (538)
Q Consensus 78 ~~p~~vv~p~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~s~~~~~~g~vIdl~~l~~i~~d~~~~~v~v~~G~~~~~l 157 (538)
....+++.|+|.+|+++++++|++ ++|+.+.|+|+|.... +....|++|.+++|+.|+++. ..++|+||+.|.+|
T Consensus 32 G~A~~~v~p~s~eel~~~~~~~~~-~~p~~vlG~GSNlLv~--d~g~~gvVI~l~~~~~i~i~~--~~v~v~AG~~l~~L 106 (297)
T PRK14653 32 GPVPLFAIPNSTNGFIETINLLKE-GIEVKILGNGTNVLPK--DEPMDFVVVSTERLDDIFVDN--DKIICESGLSLKKL 106 (297)
T ss_pred cEEEEEEecCCHHHHHHHHHHHhc-CCCEEEEcCCeeEEEe--cCCccEEEEEeCCcCceEEeC--CEEEEeCCCcHHHH
Confidence 355689999999999999999999 9999999999998866 233458999997799998863 58999999999999
Q ss_pred HHHHHHhCCccccCCCCCCccccccccccCCcCCCccccCc-cccceeEEEEEecCCeEEeccCCCchhhhhhhhcc-Cc
Q 009297 158 FYRIAEKSKTHGFPAGVCPTVGVGGHFSAGGYGNMMRKYGL-SVDNIVDAKLVDVNGRILDRNSMGEDLFWAIRGGG-AS 235 (538)
Q Consensus 158 ~~~l~~~g~~l~~~~G~~~~vgigG~~~gGg~g~~~~~~G~-~~D~v~~~~vV~a~G~~~~~~~~~~dLf~a~rG~~-g~ 235 (538)
.+++.++| | .|.+..+||+|.+ ||+.-++++.||. ..|.|.++++++ +|++++.. ..|+-|.||.+. +.
T Consensus 107 ~~~~~~~G--L---~GlE~l~gIPGTV-GGAv~mNAGayG~ei~d~l~~V~~~d-~g~v~~~~--~~e~~f~YR~S~~~~ 177 (297)
T PRK14653 107 CLVAAKNG--L---SGFENAYGIPGSV-GGAVYMNAGAYGWETAENIVEVVAYD-GKKIIRLG--KNEIKFSYRNSIFKE 177 (297)
T ss_pred HHHHHHCC--C---cchhhhcCCchhH-HHHHHHhCccCchhhheeEEEEEEEC-CCEEEEEc--hhhccccCccccCCC
Confidence 99999999 5 8999999999997 8999999999999 789999999999 78877543 369999999776 42
Q ss_pred --cEEEEEEEEEEeecC
Q 009297 236 --FGVVLAYKINLVPVP 250 (538)
Q Consensus 236 --~Givt~~~~~~~p~~ 250 (538)
--|||+++||+.|..
T Consensus 178 ~~~~iI~~a~f~L~~~~ 194 (297)
T PRK14653 178 EKDLIILRVTFKLKKGN 194 (297)
T ss_pred CCcEEEEEEEEEEecCC
Confidence 239999999998753
No 26
>COG0812 MurB UDP-N-acetylmuramate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.68 E-value=3.3e-16 Score=154.05 Aligned_cols=162 Identities=20% Similarity=0.236 Sum_probs=143.9
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHhCCCcEEEEecCcCCCCCccccCCCeEEEEecCcccEEEcCCCCeEEEeCCccHHHH
Q 009297 78 PKPVLIVAAMHESHVQAAIICAKKHNLQMKIRSGGHDYEGLSYVSNVPFFILDMFNLRSIDVDIESETAWVQAGAILGEV 157 (538)
Q Consensus 78 ~~p~~vv~p~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~s~~~~~~g~vIdl~~l~~i~~d~~~~~v~v~~G~~~~~l 157 (538)
.....++.|++.+|+.++++++.+.++|+.+.|+|+|..-. +...+|++|.+..++.++++.+...+++++|+.|.+|
T Consensus 19 g~A~~~~~~~~~e~l~~~~~~~~~~~~p~~ilG~GSNlLv~--d~g~~gvvi~~~~~~~~~~~~~~~~i~a~aG~~~~~l 96 (291)
T COG0812 19 GPAEVLVEPRDIEELKAALKYAKAEDLPVLILGGGSNLLVR--DGGIGGVVIKLGKLNFIEIEGDDGLIEAGAGAPWHDL 96 (291)
T ss_pred cceeEEEecCCHHHHHHHHHhhhhcCCCEEEEecCceEEEe--cCCCceEEEEcccccceeeeccCCeEEEccCCcHHHH
Confidence 46679999999999999999999999999999999997754 3445689999999999888877779999999999999
Q ss_pred HHHHHHhCCccccCCCCCCccccccccccCCcCCCccccCcc-ccceeEEEEEecCCeEEeccCCCchhhhhhhhcc--C
Q 009297 158 FYRIAEKSKTHGFPAGVCPTVGVGGHFSAGGYGNMMRKYGLS-VDNIVDAKLVDVNGRILDRNSMGEDLFWAIRGGG--A 234 (538)
Q Consensus 158 ~~~l~~~g~~l~~~~G~~~~vgigG~~~gGg~g~~~~~~G~~-~D~v~~~~vV~a~G~~~~~~~~~~dLf~a~rG~~--g 234 (538)
.+++.++| + .|.+..+||+|.+ ||+.-++.+.||.- .|.+.++++++.+|++.... +.||-|+||-+. .
T Consensus 97 ~~~~~~~g--l---~GlE~l~gIPGsv-Ggav~mNaGAyG~Ei~d~~~~v~~ld~~G~~~~l~--~~el~f~YR~S~f~~ 168 (291)
T COG0812 97 VRFALENG--L---SGLEFLAGIPGSV-GGAVIMNAGAYGVEISDVLVSVEVLDRDGEVRWLS--AEELGFGYRTSPFKK 168 (291)
T ss_pred HHHHHHcC--C---cchhhhcCCCccc-chhhhccCcccccchheeEEEEEEEcCCCCEEEEE--HHHhCcccccCcCCC
Confidence 99999999 5 8999999999999 88888999999985 79999999999999999644 379999999887 3
Q ss_pred ccEEEEEEEEEEeec
Q 009297 235 SFGVVLAYKINLVPV 249 (538)
Q Consensus 235 ~~Givt~~~~~~~p~ 249 (538)
...||++++|++.|-
T Consensus 169 ~~~vvl~v~f~L~~~ 183 (291)
T COG0812 169 EYLVVLSVEFKLTKG 183 (291)
T ss_pred CCEEEEEEEEEeCCC
Confidence 449999999999875
No 27
>PRK14650 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.67 E-value=4.2e-16 Score=155.79 Aligned_cols=161 Identities=13% Similarity=0.137 Sum_probs=138.2
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHhCCCcEEEEecCcCCCCCccccC-CCeEEEEecCcccEEEcCCCCeEEEeCCccHHH
Q 009297 78 PKPVLIVAAMHESHVQAAIICAKKHNLQMKIRSGGHDYEGLSYVSN-VPFFILDMFNLRSIDVDIESETAWVQAGAILGE 156 (538)
Q Consensus 78 ~~p~~vv~p~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~s~~~~-~~g~vIdl~~l~~i~~d~~~~~v~v~~G~~~~~ 156 (538)
....+++.|+|.+|+++++++++++++|+.+.|+|+|.... +.. .+|++|.+.+|+.++++. ..++|+||+.|.+
T Consensus 31 G~A~~~~~p~~~~eL~~~l~~~~~~~~p~~vlG~GSNlLv~--D~g~~~g~vi~~~~~~~i~~~~--~~v~a~AG~~~~~ 106 (302)
T PRK14650 31 GISKLFLTPKTIKDAEHIFKAAIEEKIKIFILGGGSNILIN--DEEEIDFPIIYTGHLNKIEIHD--NQIVAECGTNFED 106 (302)
T ss_pred cEEEEEEecCCHHHHHHHHHHHHHcCCCEEEEeceeEEEEE--CCCccceEEEEECCcCcEEEeC--CEEEEEeCCcHHH
Confidence 35578999999999999999999999999999999998754 222 357889886799998764 4799999999999
Q ss_pred HHHHHHHhCCccccCCCCCCccccccccccCCcCCCccccCcc-ccceeEEEEEecCCeEEeccCCCchhhhhhhhcc-C
Q 009297 157 VFYRIAEKSKTHGFPAGVCPTVGVGGHFSAGGYGNMMRKYGLS-VDNIVDAKLVDVNGRILDRNSMGEDLFWAIRGGG-A 234 (538)
Q Consensus 157 l~~~l~~~g~~l~~~~G~~~~vgigG~~~gGg~g~~~~~~G~~-~D~v~~~~vV~a~G~~~~~~~~~~dLf~a~rG~~-g 234 (538)
|.+++.++| | .|.+..+||+|++ ||+.-++.+.||.. .|.|.++++++.+|++++.. ..|+.|+||.+. -
T Consensus 107 l~~~~~~~g--l---~GlE~l~gIPGTV-GGAv~mNAGayG~ei~d~l~sV~~~d~~g~~~~~~--~~e~~f~YR~S~f~ 178 (302)
T PRK14650 107 LCKFALQNE--L---SGLEFIYGLPGTL-GGAIWMNARCFGNEISEILDKITFIDEKGKTICKK--FKKEEFKYKISPFQ 178 (302)
T ss_pred HHHHHHHcC--C---chhhhhcCCCcch-hHHHHhhCCccccchheeEEEEEEEECCCCEEEEE--HHHcCcccccccCC
Confidence 999999999 5 8999999999999 88888899999975 79999999999999988543 379999999876 3
Q ss_pred -ccEEEEEEEEEEeecC
Q 009297 235 -SFGVVLAYKINLVPVP 250 (538)
Q Consensus 235 -~~Givt~~~~~~~p~~ 250 (538)
.-.||++++|++.|..
T Consensus 179 ~~~~iIl~a~f~L~~~~ 195 (302)
T PRK14650 179 NKNTFILKATLNLKKGN 195 (302)
T ss_pred CCCEEEEEEEEEEcCCC
Confidence 2359999999998754
No 28
>PRK00046 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.65 E-value=7.2e-16 Score=156.39 Aligned_cols=160 Identities=15% Similarity=0.124 Sum_probs=136.9
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHhCCCcEEEEecCcCCCCCccccCCCeEEEEecCcccEEEc--CCC-CeEEEeCCccH
Q 009297 78 PKPVLIVAAMHESHVQAAIICAKKHNLQMKIRSGGHDYEGLSYVSNVPFFILDMFNLRSIDVD--IES-ETAWVQAGAIL 154 (538)
Q Consensus 78 ~~p~~vv~p~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~s~~~~~~g~vIdl~~l~~i~~d--~~~-~~v~v~~G~~~ 154 (538)
-...+++.|+|++|+++++++|+++++|+.+.|+|+|.... + ...|++|.+ ++++++++ .++ ..++++||+.|
T Consensus 19 G~A~~~~~p~~~~el~~~~~~~~~~~~p~~vlG~GSNlLv~--D-~~~g~vI~~-~~~~~~~~~~~~~~~~v~a~AG~~~ 94 (334)
T PRK00046 19 ARARHLVEAESEEQLLEALADARAAGLPVLVLGGGSNVLFT--E-DFDGTVLLN-RIKGIEVLSEDDDAWYLHVGAGENW 94 (334)
T ss_pred cEEeEEEeeCCHHHHHHHHHHHHHcCCCEEEEeceEEEEEC--C-CCCEEEEEe-cCCceEEEecCCCeEEEEEEcCCcH
Confidence 35678999999999999999999999999999999998765 2 356899987 49999873 222 37999999999
Q ss_pred HHHHHHHHHhCCccccCCCCCCccccccccccCCcCCCccccCcc-ccceeEEEEEecC-CeEEeccCCCchhhhhhhhc
Q 009297 155 GEVFYRIAEKSKTHGFPAGVCPTVGVGGHFSAGGYGNMMRKYGLS-VDNIVDAKLVDVN-GRILDRNSMGEDLFWAIRGG 232 (538)
Q Consensus 155 ~~l~~~l~~~g~~l~~~~G~~~~vgigG~~~gGg~g~~~~~~G~~-~D~v~~~~vV~a~-G~~~~~~~~~~dLf~a~rG~ 232 (538)
.+|.+++.++| | .|.+..+||+|++ ||+.-++.+.||.. .|.|.++++++.+ |++++.. +.|+.|+||-+
T Consensus 95 ~~l~~~~~~~g--l---~GlE~l~gIPGTV-GGAv~mNaGayG~ei~d~l~~V~v~d~~~g~~~~~~--~~e~~f~YR~S 166 (334)
T PRK00046 95 HDLVLWTLQQG--M---PGLENLALIPGTV-GAAPIQNIGAYGVELKDVCDYVEALDLATGEFVRLS--AAECRFGYRDS 166 (334)
T ss_pred HHHHHHHHHcC--c---hhhHHhcCCCcch-hHHHHhcCCcCcccHheeEEEEEEEECCCCcEEEEE--HHHcCcccccc
Confidence 99999999999 5 8999999999999 88888899999975 6999999999987 9988543 38999999987
Q ss_pred c-C-c---cEEEEEEEEEEeec
Q 009297 233 G-A-S---FGVVLAYKINLVPV 249 (538)
Q Consensus 233 ~-g-~---~Givt~~~~~~~p~ 249 (538)
. . . --||++++|++.|-
T Consensus 167 ~f~~~~~~~~iVl~a~f~L~~~ 188 (334)
T PRK00046 167 IFKHEYPDRYAITAVGFRLPKQ 188 (334)
T ss_pred cCCCCCcCCEEEEEEEEEecCC
Confidence 6 3 2 34999999999885
No 29
>PF08031 BBE: Berberine and berberine like ; InterPro: IPR012951 This domain is found in the berberine bridge and berberine bridge-like enzymes, which are involved in the biosynthesis of numerous isoquinoline alkaloids. They catalyse the transformation of the N-methyl group of (S)-reticuline into the C-8 berberine bridge carbon of (S)-scoulerine [].; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 2IPI_A 2Y3S_A 2Y3R_D 2Y08_B 2Y4G_A 3D2H_A 3FW9_A 3FW8_A 3FWA_A 3D2J_A ....
Probab=99.63 E-value=9.9e-17 Score=115.32 Aligned_cols=47 Identities=51% Similarity=0.831 Sum_probs=34.3
Q ss_pred cccccCCcccCCCCCCCcCCcccccchhhhhccccHHHHHHhhcccCCCCCCCCCCCCC
Q 009297 471 SFLAYRDLDLGTNNHKFETGYSEGRAYGINYFLENFDRLVEIKTKVDPDNFFRNEQSIP 529 (538)
Q Consensus 471 ~Y~Nyad~~~~~~~~~~~~~~~~~~~~~~~yyg~n~~RL~~IK~kYDP~~vF~~~q~I~ 529 (538)
+|+||+|.+++ ...|.+.|||+||+||++||++|||+|||+++|+||
T Consensus 1 aY~Ny~d~~~~------------~~~~~~~yyg~n~~rL~~iK~~yDP~n~F~~~q~I~ 47 (47)
T PF08031_consen 1 AYVNYPDPDLP------------GDDWQEAYYGENYDRLRAIKRKYDPDNVFRFPQSIP 47 (47)
T ss_dssp --TTS--GGGG------------SSHHHHHHHGGGHHHHHHHHHHH-TT-TS-STTS--
T ss_pred CcccCCCCccc------------hhHHHHHHhchhHHHHHHHHHHhCccceeCCCCCcC
Confidence 59999998754 125999999999999999999999999999999996
No 30
>PRK14648 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.62 E-value=3.5e-15 Score=151.14 Aligned_cols=165 Identities=19% Similarity=0.228 Sum_probs=135.3
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHhCCCcEEEEecCcCCCCCccccCCCeEEEEecCcccEEEc---CCCCeEEEeCCccH
Q 009297 78 PKPVLIVAAMHESHVQAAIICAKKHNLQMKIRSGGHDYEGLSYVSNVPFFILDMFNLRSIDVD---IESETAWVQAGAIL 154 (538)
Q Consensus 78 ~~p~~vv~p~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~s~~~~~~g~vIdl~~l~~i~~d---~~~~~v~v~~G~~~ 154 (538)
....+++.|+|.+|+++++++++++++|+.+.|+|+|.... +....|+||.+++|+++++. .+...++|++|+.|
T Consensus 28 G~A~~~~~p~s~~el~~~l~~~~~~~~p~~iLG~GSNlL~~--D~g~~G~VI~l~~~~~i~i~~~~~~~~~v~agAG~~~ 105 (354)
T PRK14648 28 GAAQFWAEPRSCTQLRALIEEAQRARIPLSLIGGGSNVLIA--DEGVPGLMLSLRRFRSLHTQTQRDGSVLVHAGAGLPV 105 (354)
T ss_pred cEEEEEEeeCCHHHHHHHHHHHHHcCCCEEEEeceeEEEEe--CCCccEEEEEeCCcCceEEeeccCCcEEEEEEeCCcH
Confidence 45678999999999999999999999999999999998755 23346899999779988752 22247999999999
Q ss_pred HHHHHHHHHhCCccccCCCCCCccccccccccCCcCCCccccCcc-ccceeEEEEE--------------------ecCC
Q 009297 155 GEVFYRIAEKSKTHGFPAGVCPTVGVGGHFSAGGYGNMMRKYGLS-VDNIVDAKLV--------------------DVNG 213 (538)
Q Consensus 155 ~~l~~~l~~~g~~l~~~~G~~~~vgigG~~~gGg~g~~~~~~G~~-~D~v~~~~vV--------------------~a~G 213 (538)
.+|.+++.++| | .|.+..+||+|.+ ||+.-++.+.||.. .|.|.+++++ +.+|
T Consensus 106 ~~Lv~~~~~~g--l---~GlE~laGIPGTV-GGAv~mNAGAyG~ei~d~l~~V~v~d~~~~~~~~~~~~~~~~~~~~~~g 179 (354)
T PRK14648 106 AALLAFCAHHA--L---RGLETFAGLPGSV-GGAAYMNARCYGRAIADCFHSARTLVLHPVRSRAKELPEVRKNAQDKRG 179 (354)
T ss_pred HHHHHHHHHcC--C---cchhhhcCCCcch-hhHhhhcCCccceEhhheEEEEEEEeccCcccccccccccccccccCCC
Confidence 99999999999 5 8999999999999 88888899999975 6999999999 4567
Q ss_pred eEE--------e---ccCCCchhhhhhhhcc-Cc---------cEEEEEEEEEEeecC
Q 009297 214 RIL--------D---RNSMGEDLFWAIRGGG-AS---------FGVVLAYKINLVPVP 250 (538)
Q Consensus 214 ~~~--------~---~~~~~~dLf~a~rG~~-g~---------~Givt~~~~~~~p~~ 250 (538)
++. + ..-.+.|+.|+||-+. -. --||++++|++.|..
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~e~~f~YR~S~f~~~~~~~~~~~~~iIl~v~f~L~~~~ 237 (354)
T PRK14648 180 ECLGLDGGPFTCSSFQTVFARAGDWGYKRSPFQSPHGVELHAGRRLILSLCVRLTPGN 237 (354)
T ss_pred ceecccccccccccceEecHHHcCccCCcccCCCCccccccCCCEEEEEEEEEEcCCC
Confidence 762 0 0123479999999876 32 239999999998753
No 31
>PRK14651 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.47 E-value=3.4e-13 Score=133.10 Aligned_cols=148 Identities=19% Similarity=0.241 Sum_probs=122.5
Q ss_pred CccEEEEcCCHHHHHHHHHHHHhCCCcEEEEecCcCCCCCccccCCCeEEEEecC-cccEEEcCCCCeEEEeCCccHHHH
Q 009297 79 KPVLIVAAMHESHVQAAIICAKKHNLQMKIRSGGHDYEGLSYVSNVPFFILDMFN-LRSIDVDIESETAWVQAGAILGEV 157 (538)
Q Consensus 79 ~p~~vv~p~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~s~~~~~~g~vIdl~~-l~~i~~d~~~~~v~v~~G~~~~~l 157 (538)
...+++ |.|.+|+++++ ++|+.+.|+|+|..-. +....|++|.+++ ++.++++. ++++|+.|.+|
T Consensus 20 ~A~~~~-p~~~~~l~~~~------~~p~~vlG~GSNlL~~--D~g~~g~vI~l~~~~~~~~~~~-----~a~AG~~~~~l 85 (273)
T PRK14651 20 PAELWT-VETHEQLAEAT------EAPYRVLGGGSNLLVS--DAGVPERVIRLGGEFAEWDLDG-----WVGGGVPLPGL 85 (273)
T ss_pred eEEEEe-cCCHHHHHHHH------CCCeEEEeceeEEEEc--CCCcceEEEEECCcceeEeECC-----EEECCCcHHHH
Confidence 334566 99999999988 5899999999998754 2334689998865 66665532 69999999999
Q ss_pred HHHHHHhCCccccCCCCCCccccccccccCCcCCCccccCcc-ccceeEEEEEecCCeEEeccCCCchhhhhhhhcc-Cc
Q 009297 158 FYRIAEKSKTHGFPAGVCPTVGVGGHFSAGGYGNMMRKYGLS-VDNIVDAKLVDVNGRILDRNSMGEDLFWAIRGGG-AS 235 (538)
Q Consensus 158 ~~~l~~~g~~l~~~~G~~~~vgigG~~~gGg~g~~~~~~G~~-~D~v~~~~vV~a~G~~~~~~~~~~dLf~a~rG~~-g~ 235 (538)
.+++.++| | .|.+..+||+|++ ||+.-++.+.||.. .|.|.++++++ +|++++.. +.|+.|+||.+. ..
T Consensus 86 ~~~~~~~g--l---~GlE~l~gIPGTV-GGAv~mNaGayG~ei~d~l~~V~~~~-~g~~~~~~--~~e~~f~YR~S~~~~ 156 (273)
T PRK14651 86 VRRAARLG--L---SGLEGLVGIPAQV-GGAVKMNAGTRFGEMADALHTVEIVH-DGGFHQYS--PDELGFGYRHSGLPP 156 (273)
T ss_pred HHHHHHCC--C---cchhhhcCCCcch-hhHHHhhCCccccChheeEEEEEEEE-CCCEEEEE--HHHccccccccCCCC
Confidence 99999999 5 7999999999999 88888899999975 69999999997 89988544 389999999876 43
Q ss_pred cEEEEEEEEEEeec
Q 009297 236 FGVVLAYKINLVPV 249 (538)
Q Consensus 236 ~Givt~~~~~~~p~ 249 (538)
--||++++|++.|-
T Consensus 157 ~~iIl~a~f~l~~~ 170 (273)
T PRK14651 157 GHVVTRVRLKLRPS 170 (273)
T ss_pred CEEEEEEEEEECCC
Confidence 35999999999875
No 32
>KOG1262 consensus FAD-binding protein DIMINUTO [General function prediction only]
Probab=99.45 E-value=9.9e-14 Score=137.69 Aligned_cols=124 Identities=23% Similarity=0.319 Sum_probs=108.7
Q ss_pred EEecCcccE-EEcCCCCeEEEeCCccHHHHHHHHHHhCCccccCCCCCCccccccccccCCcCCCccccCccccceeEEE
Q 009297 129 LDMFNLRSI-DVDIESETAWVQAGAILGEVFYRIAEKSKTHGFPAGVCPTVGVGGHFSAGGYGNMMRKYGLSVDNIVDAK 207 (538)
Q Consensus 129 Idl~~l~~i-~~d~~~~~v~v~~G~~~~~l~~~l~~~g~~l~~~~G~~~~vgigG~~~gGg~g~~~~~~G~~~D~v~~~~ 207 (538)
|++..|.+| ++|.++.+|+|+|+++++++.++|.+.|+.|++.+ .-...++||++.|-|+-..|.+||+..+.+.+.|
T Consensus 106 v~id~l~dILeld~ekmtvrvEP~Vtmgqis~~lip~g~tLaV~~-EldDlTvGGLinG~Gies~ShkyGlfq~~~~aYE 184 (543)
T KOG1262|consen 106 VPIDELHDILELDEEKMTVRVEPLVTMGQISKFLIPKGYTLAVLP-ELDDLTVGGLINGVGIESSSHKYGLFQHICTAYE 184 (543)
T ss_pred CCHHHHhHHHhcchhcceEEecCCccHHHHHHHhccCCceeeeec-ccccceecceeeecccccccchhhhHHhhhheeE
Confidence 455545555 88999999999999999999999999997766543 3467889999999999999999999999999999
Q ss_pred EEecCCeEEe--ccCCCchhhhhhhhccCccEEEEEEEEEEeecCceE
Q 009297 208 LVDVNGRILD--RNSMGEDLFWAIRGGGASFGVVLAYKINLVPVPETV 253 (538)
Q Consensus 208 vV~a~G~~~~--~~~~~~dLf~a~rG~~g~~Givt~~~~~~~p~~~~~ 253 (538)
||+|||++++ .+++++|||+|+--+.|++|..+.+|+|+.|..+.+
T Consensus 185 vVladGelv~~t~dne~sdLfyaiPWSqGTlgfLVaatiriIkvK~Yv 232 (543)
T KOG1262|consen 185 VVLADGELVRVTPDNEHSDLFYAIPWSQGTLGFLVAATIRIIKVKKYV 232 (543)
T ss_pred EEecCCeEEEecCCcccCceEEEcccccCchheeeeeEEEEEeccceE
Confidence 9999999994 355889999999988899999999999999998754
No 33
>PRK13904 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.20 E-value=7e-11 Score=115.61 Aligned_cols=141 Identities=15% Similarity=0.095 Sum_probs=114.0
Q ss_pred CccEEEEcCCHHHHHHHHHHHHhCCCcEEEEecCcCCCCCccccCCCeEEEEecCcccEEEcCCCCeEEEeCCccHHHHH
Q 009297 79 KPVLIVAAMHESHVQAAIICAKKHNLQMKIRSGGHDYEGLSYVSNVPFFILDMFNLRSIDVDIESETAWVQAGAILGEVF 158 (538)
Q Consensus 79 ~p~~vv~p~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~s~~~~~~g~vIdl~~l~~i~~d~~~~~v~v~~G~~~~~l~ 158 (538)
...+.+.|++.+ + ++|+.+.|+|+|..-. +... +.+|-+++++.++++. ..+++++|+.|.+|.
T Consensus 18 ~A~~~~~~~~~~-l----------~~p~~vlG~GSNlLv~--D~g~-~~vv~~~~~~~~~~~~--~~v~~~AG~~l~~l~ 81 (257)
T PRK13904 18 PLEVLVLEEIDD-F----------SQDGQIIGGANNLLIS--PNPK-NLAILGKNFDYIKIDG--ECLEIGGATKSGKIF 81 (257)
T ss_pred eEEEEEEechhh-h----------CCCeEEEeceeEEEEe--cCCc-cEEEEccCcCeEEEeC--CEEEEEcCCcHHHHH
Confidence 445677788777 5 8999999999997754 2222 3444346788888754 479999999999999
Q ss_pred HHHHHhCCccccCCCCCCccccccccccCCcCCCccccCcc-ccceeEEEEEecCCeEEeccCCCchhhhhhhhcc-Ccc
Q 009297 159 YRIAEKSKTHGFPAGVCPTVGVGGHFSAGGYGNMMRKYGLS-VDNIVDAKLVDVNGRILDRNSMGEDLFWAIRGGG-ASF 236 (538)
Q Consensus 159 ~~l~~~g~~l~~~~G~~~~vgigG~~~gGg~g~~~~~~G~~-~D~v~~~~vV~a~G~~~~~~~~~~dLf~a~rG~~-g~~ 236 (538)
+++.++| | .|.+..+||+|.+ ||+.-++.+.||.. +|.|.++++++ |+ + ...|+.|+||.+. .
T Consensus 82 ~~~~~~g--l---~GlE~l~gIPGtV-GGAv~mNaGa~g~ei~d~l~~V~~~~--~~-~----~~~e~~f~YR~S~~~-- 146 (257)
T PRK13904 82 NYAKKNN--L---GGFEFLGKLPGTL-GGLVKMNAGLKEYEISNNLESICTNG--GW-I----EKEDIGFGYRSSGIN-- 146 (257)
T ss_pred HHHHHCC--C---chhhhhcCCCccH-HHHHHhcCCcCccchheeEEEEEEEe--eE-E----eHHHCcccccCcCCC--
Confidence 9999999 5 8999999999999 88888889999975 69999999998 42 2 3479999999765 3
Q ss_pred EEEEEEEEEEeecC
Q 009297 237 GVVLAYKINLVPVP 250 (538)
Q Consensus 237 Givt~~~~~~~p~~ 250 (538)
.||++++||+.|..
T Consensus 147 ~iIl~a~f~l~~~~ 160 (257)
T PRK13904 147 GVILEARFKKTHGF 160 (257)
T ss_pred cEEEEEEEEECCCC
Confidence 49999999998854
No 34
>PF00941 FAD_binding_5: FAD binding domain in molybdopterin dehydrogenase; InterPro: IPR002346 Oxidoreductases, that also bind molybdopterin, have essentially no similarity outside this common domain. They include aldehyde oxidase (1.2.3.1 from EC), that converts an aldehyde and water to an acid and hydrogen peroxide, and xanthine dehydrogenase (1.1.1.204 from EC), that converts xanthine to urate. These enzymes require molybdopterin and FAD as cofactors and have and two 2FE-2S clusters. Another enzyme that contains this domain is the Pseudomonas thermocarboxydovorans carbon monoxide oxygenase.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2E1Q_C 2CKJ_A 3EUB_K 3NS1_K 3NVV_B 1FO4_B 3AM9_A 3AX7_B 3BDJ_A 3ETR_B ....
Probab=95.60 E-value=0.0073 Score=56.15 Aligned_cols=77 Identities=13% Similarity=0.145 Sum_probs=51.1
Q ss_pred ccEEEEcCCHHHHHHHHHHHHhCCCcEEEEecCcCCCCCcccc-CCCeEEEEecCcccE-EEcCCCCeEEEeCCccHHHH
Q 009297 80 PVLIVAAMHESHVQAAIICAKKHNLQMKIRSGGHDYEGLSYVS-NVPFFILDMFNLRSI-DVDIESETAWVQAGAILGEV 157 (538)
Q Consensus 80 p~~vv~p~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~s~~~-~~~g~vIdl~~l~~i-~~d~~~~~v~v~~G~~~~~l 157 (538)
+..+++|+|.+|+.++++ .+-...+.+||++....-... .....+||++++... .|..+++.+++|++++..++
T Consensus 2 ~~~~~~P~sl~ea~~ll~----~~~~a~~vaGgT~l~~~~~~~~~~~~~lIdl~~i~eL~~I~~~~~~l~IGA~vtl~~l 77 (171)
T PF00941_consen 2 PFEYFRPKSLEEALELLA----KGPDARIVAGGTDLGVQMREGILSPDVLIDLSRIPELNGISEDDGGLRIGAAVTLSEL 77 (171)
T ss_dssp S-EEEE-SSHHHHHHHHH----HGTTEEEESS-TTHHHHHHTTS---SEEEEGTTSGGGG-EEEETSEEEEETTSBHHHH
T ss_pred CeEEEccCCHHHHHHHHh----cCCCCEEEeCCCccchhcccCccccceEEEeEEecccccEEEeccEEEECCCccHHHH
Confidence 345899999999999887 233678899999854221000 123589999876543 33334689999999999999
Q ss_pred HHH
Q 009297 158 FYR 160 (538)
Q Consensus 158 ~~~ 160 (538)
.+.
T Consensus 78 ~~~ 80 (171)
T PF00941_consen 78 EES 80 (171)
T ss_dssp HHH
T ss_pred hhc
Confidence 876
No 35
>PRK09799 putative oxidoreductase; Provisional
Probab=93.66 E-value=0.2 Score=49.80 Aligned_cols=139 Identities=14% Similarity=0.040 Sum_probs=83.1
Q ss_pred EEEEcCCHHHHHHHHHHHHhCCCcEEEEecCcCCCCCccccCCCeEEEEecCcccE-EEcCCCCeEEEeCCccHHHHHHH
Q 009297 82 LIVAAMHESHVQAAIICAKKHNLQMKIRSGGHDYEGLSYVSNVPFFILDMFNLRSI-DVDIESETAWVQAGAILGEVFYR 160 (538)
Q Consensus 82 ~vv~p~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~s~~~~~~g~vIdl~~l~~i-~~d~~~~~v~v~~G~~~~~l~~~ 160 (538)
-+..|+|.+|..++++ +++-...+.+||++....- .......+||++++ .. .+..+++.+++|+++++.++.+.
T Consensus 4 ~y~~P~sl~Ea~~ll~---~~~~~a~ilAGGT~L~~~~-~~~~~~~lIdi~~i-eL~~I~~~~~~l~IGA~vT~~~l~~~ 78 (258)
T PRK09799 4 QFFRPDSVEQALELKR---RYQDEAVWFAGGSKLNATP-TRTDKKIAISLQDL-ELDWIEWDNGALRIGAMSRLQPLRDA 78 (258)
T ss_pred cEeCCCCHHHHHHHHH---hCCCCCEEEecCCChHhhh-CCCCCCEEEEcCCC-CCCeEEecCCEEEEccCCcHHHHHhC
Confidence 4689999999887765 3433467899999974221 12234688999975 44 34456689999999999999864
Q ss_pred H------HHhCCccccC-CCCCCccccccccccCCcCCCccccCccccc-----eeEEEEEecCCeEEeccCCCchhhhh
Q 009297 161 I------AEKSKTHGFP-AGVCPTVGVGGHFSAGGYGNMMRKYGLSVDN-----IVDAKLVDVNGRILDRNSMGEDLFWA 228 (538)
Q Consensus 161 l------~~~g~~l~~~-~G~~~~vgigG~~~gGg~g~~~~~~G~~~D~-----v~~~~vV~a~G~~~~~~~~~~dLf~a 228 (538)
. .+.-. .+. +..-+..++||.+..+-- .+|. .+..+|+..+++.+.. .|+|
T Consensus 79 ~~~~~~L~~a~~--~vas~qIRN~aTiGGNl~~a~p---------~sD~~p~LlAldA~v~l~~~r~vpl----~~f~-- 141 (258)
T PRK09799 79 RFIPAALREALG--FVYSRHLRNQSTIGGEIAARQE---------ESVLLPVLLALDAELVFGNGETLSI----EDYL-- 141 (258)
T ss_pred cccHHHHHHHHH--HhCCHHHhccchhHHHhhcCCc---------cHHHHHHHHHcCCEEEEecCcEEeH----HHhc--
Confidence 2 11110 011 123355578888753321 1343 2566777777754422 3433
Q ss_pred hhhccCccEEEEEEEEE
Q 009297 229 IRGGGASFGVVLAYKIN 245 (538)
Q Consensus 229 ~rG~~g~~Givt~~~~~ 245 (538)
.|. .-.|||++.+.
T Consensus 142 -~g~--~~Eil~~I~iP 155 (258)
T PRK09799 142 -ACP--CDRLLTEIIIP 155 (258)
T ss_pred -CCC--CCcEEEEEEcC
Confidence 222 22588888764
No 36
>TIGR03312 Se_sel_red_FAD probable selenate reductase, FAD-binding subunit. This protein is suggested by Bebien, et al., to be the FAD-binding subunit of a molydbopterin-containing selenate reductase. Our comparative genomics suggests it to be a subunit of a selenium-dependent molybdenum hydroxylase for an unknown substrate.
Probab=92.12 E-value=0.46 Score=47.19 Aligned_cols=139 Identities=12% Similarity=0.114 Sum_probs=80.1
Q ss_pred EEEcCCHHHHHHHHHHHHhCCCcEEEEecCcCCCCCccccCCCeEEEEecCcccE-EEcCCCCeEEEeCCccHHHHHHH-
Q 009297 83 IVAAMHESHVQAAIICAKKHNLQMKIRSGGHDYEGLSYVSNVPFFILDMFNLRSI-DVDIESETAWVQAGAILGEVFYR- 160 (538)
Q Consensus 83 vv~p~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~s~~~~~~g~vIdl~~l~~i-~~d~~~~~v~v~~G~~~~~l~~~- 160 (538)
++.|+|.+|..++++ +++-.-.+.+||+++.-.- .......+||++++ .. .+..+++.+++|++++..++.+.
T Consensus 4 y~~P~sl~Ea~~ll~---~~~~~a~~lAGGTdL~~~~-~~~~~~~lIdl~~i-eL~~I~~~~~~l~IGA~~t~~~l~~~~ 78 (257)
T TIGR03312 4 FFRPESTIQALELKK---RHTGVAVWFAGGSKLNATP-TRTDKKVAISLDKL-ALDKIELQGGALHIGAMCHLQSLIDNE 78 (257)
T ss_pred eECCCCHHHHHHHHH---hCCCCCEEEecCcchhhhh-cccCCCEEEEcCCC-CCCcEEecCCEEEEEeCCcHHHHHhCc
Confidence 678999999887654 3432356789999975221 11223578999875 43 34445579999999999998752
Q ss_pred -----HHHhCCccccCCCCCCccccccccccCCcCCCccccCccccc-----eeEEEEEecCCeEEeccCCCchhhhhhh
Q 009297 161 -----IAEKSKTHGFPAGVCPTVGVGGHFSAGGYGNMMRKYGLSVDN-----IVDAKLVDVNGRILDRNSMGEDLFWAIR 230 (538)
Q Consensus 161 -----l~~~g~~l~~~~G~~~~vgigG~~~gGg~g~~~~~~G~~~D~-----v~~~~vV~a~G~~~~~~~~~~dLf~a~r 230 (538)
|.+.-... -.+..-+..++||.+..+-- ..|. .+..+|+..+++.+.. .|+|-+
T Consensus 79 ~~~~~L~~aa~~v-a~~qIRN~gTlGGNl~~a~p---------~~D~~~~LlaldA~v~l~~~r~vp~----~dF~~g-- 142 (257)
T TIGR03312 79 LTPAALKEALGFV-YSRHIRNQATIGGEIAAFQS---------ESLLLPVLLALKATVVLANASQMDI----EDYLAS-- 142 (257)
T ss_pred chHHHHHHHHHHh-CCHHHhccccHHHHhhcCCC---------chHHHHHHHHcCCEEEEecCcEEeH----HHhcCC--
Confidence 22211001 11233455678888854321 1232 3556666666544422 343322
Q ss_pred hccCccEEEEEEEEE
Q 009297 231 GGGASFGVVLAYKIN 245 (538)
Q Consensus 231 G~~g~~Givt~~~~~ 245 (538)
..+ -+||++.+.
T Consensus 143 -~~~--Ell~~V~iP 154 (257)
T TIGR03312 143 -EQR--ELIVEVIIP 154 (257)
T ss_pred -CCC--cEEEEEEcC
Confidence 112 488888764
No 37
>PRK09971 xanthine dehydrogenase subunit XdhB; Provisional
Probab=91.66 E-value=0.35 Score=48.94 Aligned_cols=151 Identities=15% Similarity=0.170 Sum_probs=83.1
Q ss_pred EEEEcCCHHHHHHHHHHHHhCCCcEEEEecCcCCCCC-ccccCCCeEEEEecCcccE-EEc-CCCCeEEEeCCccHHHHH
Q 009297 82 LIVAAMHESHVQAAIICAKKHNLQMKIRSGGHDYEGL-SYVSNVPFFILDMFNLRSI-DVD-IESETAWVQAGAILGEVF 158 (538)
Q Consensus 82 ~vv~p~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~-s~~~~~~g~vIdl~~l~~i-~~d-~~~~~v~v~~G~~~~~l~ 158 (538)
-++.|+|.+|..++++. +. ...+.+||+++... .........+||+++++.. .|. .+++.+++|+++++.++.
T Consensus 6 ~~~~P~sl~Ea~~ll~~---~~-~a~ivaGGTdl~~~~~~~~~~p~~lIdl~~i~eL~~I~~~~~~~l~IGA~vt~~~l~ 81 (291)
T PRK09971 6 EYHEAATLEEAIELLAD---NP-QAKLIAGGTDVLIQLHHHNDRYRHLVSIHNIAELRGITLAEDGSIRIGAATTFTQII 81 (291)
T ss_pred ceeCCCCHHHHHHHHHh---CC-CCEEEeccchHHHHHhCCCCCCCeEEEcCCChhhhCeEecCCCEEEEEeCCcHHHHh
Confidence 57899999998887753 22 35789999996311 1111223688999976544 233 234679999999999987
Q ss_pred H--HHHHhCCccc-----c-CCCCCCccccccccccCCcCCCccccCccccce-----eEE--EEEecCCeEEeccCCCc
Q 009297 159 Y--RIAEKSKTHG-----F-PAGVCPTVGVGGHFSAGGYGNMMRKYGLSVDNI-----VDA--KLVDVNGRILDRNSMGE 223 (538)
Q Consensus 159 ~--~l~~~g~~l~-----~-~~G~~~~vgigG~~~gGg~g~~~~~~G~~~D~v-----~~~--~vV~a~G~~~~~~~~~~ 223 (538)
+ .+.++-..|. + .+..-+..++||.+..+.. ..|.+ +.. ++..++|+.. ..- .
T Consensus 82 ~~~~i~~~~p~L~~a~~~ia~~qIRN~aTiGGNi~~a~p---------~sD~~~~Llal~A~v~i~~~~g~R~-vp~--~ 149 (291)
T PRK09971 82 EDPIIQKHLPALAEAAVSIGGPQIRNVATIGGNICNGAT---------SADSAPPLFALDAKLEIHSPNGVRF-VPI--N 149 (291)
T ss_pred cChHHHHHhHHHHHHHHHhCCHHHhcceecccccccCCc---------chhHHHHHHHcCCEEEEEcCCCcEE-EEH--H
Confidence 5 1211100000 1 1233456678888864321 13433 333 4444566322 111 3
Q ss_pred hhhhhhhhcc-CccEEEEEEEEEEee
Q 009297 224 DLFWAIRGGG-ASFGVVLAYKINLVP 248 (538)
Q Consensus 224 dLf~a~rG~~-g~~Givt~~~~~~~p 248 (538)
|+|-+.+--- ..--+||++.+...+
T Consensus 150 df~~g~~~t~l~~~Eil~~I~iP~~~ 175 (291)
T PRK09971 150 GFYTGPGKVSLEHDEILVAFIIPPEP 175 (291)
T ss_pred HhcCCccccccCCCceEEEEEeCCCC
Confidence 5453322111 222489998876433
No 38
>PF09265 Cytokin-bind: Cytokinin dehydrogenase 1, FAD and cytokinin binding; InterPro: IPR015345 This domain adopts an alpha+beta sandwich structure with an antiparallel beta-sheet, in a ferredoxin-like fold. It is predominantly found in plant cytokinin dehydrogenase 1, where it is capable of binding both FAD and cytokinin substrates. The substrate displays a 'plug-into-socket' binding mode that seals the catalytic site and precisely positions the carbon atom undergoing oxidation in close contact with the reactive locus of the flavin []. ; GO: 0019139 cytokinin dehydrogenase activity, 0050660 flavin adenine dinucleotide binding, 0009690 cytokinin metabolic process, 0055114 oxidation-reduction process; PDB: 2EXR_A 2Q4W_A 3S1E_A 1W1Q_A 2QPM_A 3C0P_A 3BW7_A 3S1C_A 1W1S_A 2QKN_A ....
Probab=91.63 E-value=0.061 Score=53.60 Aligned_cols=33 Identities=27% Similarity=0.473 Sum_probs=24.6
Q ss_pred cchhhhhccccHHHHHHhhcccCCCCCCCCCCCC
Q 009297 495 RAYGINYFLENFDRLVEIKTKVDPDNFFRNEQSI 528 (538)
Q Consensus 495 ~~~~~~yyg~n~~RL~~IK~kYDP~~vF~~~q~I 528 (538)
+.|. .-||+.++|+++.|++|||.+++.-.|.|
T Consensus 248 ~dW~-~HFG~~W~~f~~~K~~yDP~~IL~PGq~I 280 (281)
T PF09265_consen 248 EDWR-RHFGPKWERFVERKRRYDPKAILAPGQGI 280 (281)
T ss_dssp HHHH-HHHGHHHHHHHHHHHHH-TT--B-GGG-S
T ss_pred HHHH-HHhchHHHHHHHHHHhCCchhhcCCCCCC
Confidence 3585 57899999999999999999999988877
No 39
>TIGR02963 xanthine_xdhA xanthine dehydrogenase, small subunit. Members of this protein family are the small subunit (or, in eukaryotes, the N-terminal domain) of xanthine dehydrogenase, an enzyme of purine catabolism via urate. The small subunit contains both an FAD and a 2Fe-2S cofactor. Aldehyde oxidase (retinal oxidase) appears to have arisen as a neofunctionalization among xanthine dehydrogenases in eukaryotes and
Probab=90.50 E-value=0.63 Score=50.36 Aligned_cols=150 Identities=15% Similarity=0.134 Sum_probs=87.0
Q ss_pred ccEEEEcCCHHHHHHHHHHHHhCCCcEEEEecCcCCCCC-ccccCCCeEEEEecCcccE-EEcCCCCeEEEeCCccHHHH
Q 009297 80 PVLIVAAMHESHVQAAIICAKKHNLQMKIRSGGHDYEGL-SYVSNVPFFILDMFNLRSI-DVDIESETAWVQAGAILGEV 157 (538)
Q Consensus 80 p~~vv~p~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~-s~~~~~~g~vIdl~~l~~i-~~d~~~~~v~v~~G~~~~~l 157 (538)
..-++.|+|.+|+.++++- +. ...+.+||++..-. .........+||++++... .+..+++.+++|+++++.|+
T Consensus 192 ~~~~~~P~sl~Ea~~ll~~---~~-~a~lvAGGTdl~~~~~~~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vT~~el 267 (467)
T TIGR02963 192 GERFIAPTTLDDLAALKAA---HP-DARIVAGSTDVGLWVTKQMRDLPDVIYVGQVAELKRIEETDDGIEIGAAVTLTDA 267 (467)
T ss_pred CceEECCCCHHHHHHHHhh---CC-CCEEEecCcchHHHHhcCCCCCCeEEECCCChhhccEEEcCCEEEEecCCcHHHH
Confidence 3468999999999887753 32 35778999996321 0011223588999986544 34445678999999999999
Q ss_pred HHHHHHhCCccc-----cC-CCCCCccccccccccCCcCCCccccCccccce-----eE--EEEEecCCeEEeccCCCch
Q 009297 158 FYRIAEKSKTHG-----FP-AGVCPTVGVGGHFSAGGYGNMMRKYGLSVDNI-----VD--AKLVDVNGRILDRNSMGED 224 (538)
Q Consensus 158 ~~~l~~~g~~l~-----~~-~G~~~~vgigG~~~gGg~g~~~~~~G~~~D~v-----~~--~~vV~a~G~~~~~~~~~~d 224 (538)
.+.+.++-..|. +. +..-+..+|||.+..+.- .+|.. +. +++...+|+... .- .|
T Consensus 268 ~~~l~~~~p~L~~a~~~ias~qIRN~aTiGGNI~~asP---------~sD~~p~LlALdA~v~l~~~~G~R~v-pl--~d 335 (467)
T TIGR02963 268 YAALAKRYPELGELLRRFASLQIRNAGTLGGNIANGSP---------IGDSPPALIALGARLTLRKGEGRRTL-PL--ED 335 (467)
T ss_pred HHHHHHHhHHHHHHHHHhCCHHHcCceecccccccCCC---------chHHHHHHHHcCCEEEEEcCCCcEEE-eH--HH
Confidence 876654311011 11 123455678888854321 23432 33 344455663221 11 45
Q ss_pred hhhhhhhcc-CccEEEEEEEEE
Q 009297 225 LFWAIRGGG-ASFGVVLAYKIN 245 (538)
Q Consensus 225 Lf~a~rG~~-g~~Givt~~~~~ 245 (538)
.|-+++--. ..--||+++.+.
T Consensus 336 F~~g~~kt~L~~~EiI~~I~iP 357 (467)
T TIGR02963 336 FFIDYGKTDRQPGEFVEALHVP 357 (467)
T ss_pred hhcccccccCCCCceEEEEEec
Confidence 554443222 233599998875
No 40
>PLN00107 FAD-dependent oxidoreductase; Provisional
Probab=88.18 E-value=1.7 Score=42.68 Aligned_cols=22 Identities=23% Similarity=0.676 Sum_probs=20.1
Q ss_pred ccHHHHHHhhcccCCCCCCCCC
Q 009297 504 ENFDRLVEIKTKVDPDNFFRNE 525 (538)
Q Consensus 504 ~n~~RL~~IK~kYDP~~vF~~~ 525 (538)
.++++-++||+++||+++|.+.
T Consensus 176 Pr~~dFlavR~~lDP~G~F~N~ 197 (257)
T PLN00107 176 KKAGEFLKVKERLDPEGLFSSE 197 (257)
T ss_pred cCHHHHHHHHHHhCCCCccCCH
Confidence 5888999999999999999875
No 41
>TIGR03195 4hydrxCoA_B 4-hydroxybenzoyl-CoA reductase, beta subunit. This model represents the second largest chain, beta, of the enzyme 4-hydroxybenzoyl-CoA reductase. In species capable of degrading various aromatic compounds by way of benzoyl-CoA, this enzyme can convert 4-hydroxybenzoyl-CoA to benzoyl-CoA.
Probab=87.84 E-value=0.76 Score=47.10 Aligned_cols=99 Identities=15% Similarity=0.194 Sum_probs=60.7
Q ss_pred EEEEcCCHHHHHHHHHHHHhCCCcEEEEecCcCCCCCcc-ccCCCeEEEEecCcccE-EEcCCCCeEEEeCCccHHHHHH
Q 009297 82 LIVAAMHESHVQAAIICAKKHNLQMKIRSGGHDYEGLSY-VSNVPFFILDMFNLRSI-DVDIESETAWVQAGAILGEVFY 159 (538)
Q Consensus 82 ~vv~p~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~s~-~~~~~g~vIdl~~l~~i-~~d~~~~~v~v~~G~~~~~l~~ 159 (538)
-++.|+|.+|..++++- ++ .-.+.+||++...... .......+||++++..+ .|..+++.+++|+++++.++.+
T Consensus 6 ~~~~P~sl~eA~~ll~~---~~-~a~ivaGGTdl~~~~~~~~~~p~~lIdi~~I~eL~~I~~~~~~l~IGA~vT~~~l~~ 81 (321)
T TIGR03195 6 RTLRPASLADAVAALAA---HP-AARPLAGGTDLLPNLRRGLGQPETLVDLTGIDEIAQLSTLADGLRIGAGVTLAALAE 81 (321)
T ss_pred eEECCCCHHHHHHHHhh---CC-CCEEEEccchHHHHHhcccCCCCeEEECCCChhhccEEecCCEEEEeccCcHHHHhh
Confidence 47899999998877653 32 3467999998532110 11223688999976443 2334557899999999999854
Q ss_pred H---------HHHhCCccccC-CCCCCcccccccccc
Q 009297 160 R---------IAEKSKTHGFP-AGVCPTVGVGGHFSA 186 (538)
Q Consensus 160 ~---------l~~~g~~l~~~-~G~~~~vgigG~~~g 186 (538)
. |.+.-. . +. +..-+..++||.+..
T Consensus 82 ~~~i~~~~p~L~~a~~-~-ias~qIRN~aTiGGNi~~ 116 (321)
T TIGR03195 82 DALVRTRWPALAQAAR-A-VAGPTHRAAATLGGNLCL 116 (321)
T ss_pred ChhhHhHhHHHHHHHH-H-hCCHHHhCceecHHhhhc
Confidence 2 211110 0 11 123355678999874
No 42
>TIGR03199 pucC xanthine dehydrogenase C subunit. This gene has been characterized in B. subtilis as the FAD binding-subunit of xanthine dehydrogenase (pucC), acting in conjunction with pucD, the molybdopterin-binding subunit and pucE, the FeS-binding subunit.
Probab=86.04 E-value=0.98 Score=45.03 Aligned_cols=98 Identities=11% Similarity=0.084 Sum_probs=59.6
Q ss_pred cCCHHHHHHHHHHHHhCCCcEEEEecCcCCCCCcccc--CCCeEEEEecCcccE-EEcCCCCeEEEeCCccHHHHHHH--
Q 009297 86 AMHESHVQAAIICAKKHNLQMKIRSGGHDYEGLSYVS--NVPFFILDMFNLRSI-DVDIESETAWVQAGAILGEVFYR-- 160 (538)
Q Consensus 86 p~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~s~~~--~~~g~vIdl~~l~~i-~~d~~~~~v~v~~G~~~~~l~~~-- 160 (538)
|+|.+|+.++++- +. ...+.+||+++.-.-... .....+||++++... .++.+++.+++|+++++.++.+.
T Consensus 1 P~sl~ea~~ll~~---~~-~a~ivaGgT~l~~~~~~~~~~~~~~lIdi~~i~eL~~I~~~~~~l~IGA~vt~~~l~~~~~ 76 (264)
T TIGR03199 1 PAALDEAWSLLEK---AP-DSTFVSGSTLLQLQWEKGTLPMKQHLVSLEGIDELKGISTSDTHVSIGALTTLNECRKNPL 76 (264)
T ss_pred CCCHHHHHHHHHh---CC-CCEEEEccChHHHHHhcCcCCCCCeEEEcCCChhhCcEEecCCEEEEecCCcHHHHhhChH
Confidence 7788888777764 22 357899999863211011 124688999987655 45556789999999999998642
Q ss_pred HHHhCCccc-----cC-CCCCCccccccccccC
Q 009297 161 IAEKSKTHG-----FP-AGVCPTVGVGGHFSAG 187 (538)
Q Consensus 161 l~~~g~~l~-----~~-~G~~~~vgigG~~~gG 187 (538)
+.++-..|. +- +..-+..++||.+..+
T Consensus 77 i~~~~p~L~~a~~~ia~~qIRN~aTlGGNl~~~ 109 (264)
T TIGR03199 77 IKRALPCFVDAASAIAAPGVRNRATIGGNIASG 109 (264)
T ss_pred hHhHhHHHHHHHHHhcCHHHhcceecHHhccCc
Confidence 111000010 11 1233566789988654
No 43
>COG4630 XdhA Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A [Nucleotide transport and metabolism]
Probab=78.56 E-value=5.4 Score=41.11 Aligned_cols=140 Identities=14% Similarity=0.098 Sum_probs=81.4
Q ss_pred ccEEEEcCCHHHHHHHHHHHHhCCCcEEEEecCcCCCCCccccC-CCeEEEEecCcccE-EEcCCCCeEEEeCCccHHHH
Q 009297 80 PVLIVAAMHESHVQAAIICAKKHNLQMKIRSGGHDYEGLSYVSN-VPFFILDMFNLRSI-DVDIESETAWVQAGAILGEV 157 (538)
Q Consensus 80 p~~vv~p~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~s~~~~-~~g~vIdl~~l~~i-~~d~~~~~v~v~~G~~~~~l 157 (538)
-..++.|.+.+|+..++.. +-..++..|++++.-..+-.. +-..+|-..++..+ +++...+.+++|+|++..+.
T Consensus 203 ~~r~~~P~~l~D~a~l~aa----~P~AtivAGsTDvgLwVtk~mr~l~~vi~v~~l~eL~~i~~~~~~l~iGAgvt~t~a 278 (493)
T COG4630 203 DDRFIVPATLADFADLLAA----HPGATIVAGSTDVGLWVTKQMRDLNPVIFVGHLAELRRIEVSTGGLEIGAGVTYTQA 278 (493)
T ss_pred CceeEeeccHHHHHHHHhh----CCCCEEEecCcchhhHHHHHHhhcCCeEEecchhhhheeeecCCcEEEccCccHHHH
Confidence 3468899999999887633 334667778887542211111 11345555555554 45567789999999999999
Q ss_pred HHHHHHhCCccc--cC-CCC---CCccccccccccCCcCCCccccCcccc--ceeEEEEEecCCeEEe-ccCCCchhhhh
Q 009297 158 FYRIAEKSKTHG--FP-AGV---CPTVGVGGHFSAGGYGNMMRKYGLSVD--NIVDAKLVDVNGRILD-RNSMGEDLFWA 228 (538)
Q Consensus 158 ~~~l~~~g~~l~--~~-~G~---~~~vgigG~~~gGg~g~~~~~~G~~~D--~v~~~~vV~a~G~~~~-~~~~~~dLf~a 228 (538)
++.|..+-..|+ ++ -|+ -+.-++||.+..| |.. |-+.- -.+..++++-.|+-.+ ..- .|+|-+
T Consensus 279 ~~~la~~~P~l~~L~~r~gg~qvRN~gTlGGNIang-----SPI-GDtPPaLIALgA~ltLr~g~~~RtlPL--e~~Fi~ 350 (493)
T COG4630 279 YRALAGRYPALGELWDRFGGEQVRNMGTLGGNIANG-----SPI-GDTPPALIALGATLTLRSGDGRRTLPL--EDYFIA 350 (493)
T ss_pred HHHHHhhCchHHHHHHHhcchhhhccccccccccCC-----CcC-CCCCchhhhcCcEEEEEecCCcccccH--HHHHHH
Confidence 999986532221 11 122 1333466666433 222 22221 2377788877665442 222 577888
Q ss_pred hhh
Q 009297 229 IRG 231 (538)
Q Consensus 229 ~rG 231 (538)
|+-
T Consensus 351 Y~k 353 (493)
T COG4630 351 YGK 353 (493)
T ss_pred hhh
Confidence 863
No 44
>PLN00192 aldehyde oxidase
Probab=78.10 E-value=5.2 Score=49.05 Aligned_cols=84 Identities=7% Similarity=0.041 Sum_probs=56.3
Q ss_pred ccEEEEcCCHHHHHHHHHHHHhCCCcEEEEecCcCCCCCccccCCCeEEEEecCcccE-EEcCCCCeEEEeCCccHHHHH
Q 009297 80 PVLIVAAMHESHVQAAIICAKKHNLQMKIRSGGHDYEGLSYVSNVPFFILDMFNLRSI-DVDIESETAWVQAGAILGEVF 158 (538)
Q Consensus 80 p~~vv~p~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~s~~~~~~g~vIdl~~l~~i-~~d~~~~~v~v~~G~~~~~l~ 158 (538)
..-++.|+|.+|+.++++-....+-...+..||+++.-.- .......+||++++..+ .+..+++.+++||++++.++.
T Consensus 233 ~~~~~~P~sl~ea~~ll~~~~~~~~~a~lvAGgTdl~~~k-~~~~p~~lIdi~~I~EL~~I~~~~~~l~IGA~vTl~el~ 311 (1344)
T PLN00192 233 RYRWYTPVSVEELQSLLESNNFDGVSVKLVVGNTGTGYYK-DEELYDKYIDIRHIPELSMIRRDEKGIEIGAVVTISKAI 311 (1344)
T ss_pred CceEECcCCHHHHHHHHHhCCCCCCCeEEEEeCCcceeee-ccCCCCeEEEcCCChhhhcEEecCCEEEEeecCcHHHHH
Confidence 3468999999999887653210012366788999964221 12223688999976554 344456799999999999998
Q ss_pred HHHHHh
Q 009297 159 YRIAEK 164 (538)
Q Consensus 159 ~~l~~~ 164 (538)
+.+.++
T Consensus 312 ~~l~~~ 317 (1344)
T PLN00192 312 EALREE 317 (1344)
T ss_pred HHHHhh
Confidence 766543
No 45
>PF04030 ALO: D-arabinono-1,4-lactone oxidase ; InterPro: IPR007173 This domain is specific to D-arabinono-1,4-lactone oxidase 1.1.3.37 from EC, which is involved in the final step of the D-erythroascorbic acid biosynthesis pathway [].; GO: 0003885 D-arabinono-1,4-lactone oxidase activity, 0055114 oxidation-reduction process, 0016020 membrane; PDB: 2VFU_A 2VFV_A 2VFT_A 2VFS_A 2VFR_A.
Probab=77.55 E-value=2.8 Score=41.53 Aligned_cols=22 Identities=27% Similarity=0.696 Sum_probs=16.9
Q ss_pred ccHHHHHHhhcccCCCCCCCCC
Q 009297 504 ENFDRLVEIKTKVDPDNFFRNE 525 (538)
Q Consensus 504 ~n~~RL~~IK~kYDP~~vF~~~ 525 (538)
.++++..++|+++||+|+|.+.
T Consensus 233 p~~~~F~~~r~~~DP~g~F~n~ 254 (259)
T PF04030_consen 233 PRLDDFLAVRKKLDPQGVFLND 254 (259)
T ss_dssp TTHHHHHHHHHHH-TT-TT--H
T ss_pred cCHHHHHHHHHHhCCCCCCCCH
Confidence 7999999999999999999763
No 46
>PLN02906 xanthine dehydrogenase
Probab=77.54 E-value=3.5 Score=50.47 Aligned_cols=79 Identities=8% Similarity=0.029 Sum_probs=54.7
Q ss_pred cEEEEcCCHHHHHHHHHHHHhCCCcEEEEecCcCCCCCc-cccCCCeEEEEecCcccE-EEcCCCCeEEEeCCccHHHHH
Q 009297 81 VLIVAAMHESHVQAAIICAKKHNLQMKIRSGGHDYEGLS-YVSNVPFFILDMFNLRSI-DVDIESETAWVQAGAILGEVF 158 (538)
Q Consensus 81 ~~vv~p~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~s-~~~~~~g~vIdl~~l~~i-~~d~~~~~v~v~~G~~~~~l~ 158 (538)
.-++.|+|.+|+.++++- +. .-.+.+||+++.-.- ........+||++++..+ .|..++..+++|+++++.++.
T Consensus 229 ~~~~~P~tl~ea~~ll~~---~~-~a~ivAGGTdl~~~~~~~~~~~~~lIdi~~I~eL~~I~~~~~~l~IGA~vT~~el~ 304 (1319)
T PLN02906 229 LTWYRPTSLQHLLELKAE---YP-DAKLVVGNTEVGIEMRFKNAQYPVLISPTHVPELNAIKVKDDGLEIGAAVRLSELQ 304 (1319)
T ss_pred ceEECcCCHHHHHHHHHh---CC-CCEEEEcCchhHHHhhhccCCCCeEEECCCChhhhcEEecCCEEEEecCCcHHHHH
Confidence 358999999999887653 22 246788999973210 011223688999976554 344456789999999999999
Q ss_pred HHHHH
Q 009297 159 YRIAE 163 (538)
Q Consensus 159 ~~l~~ 163 (538)
+.|.+
T Consensus 305 ~~l~~ 309 (1319)
T PLN02906 305 NLFRK 309 (1319)
T ss_pred HHHHH
Confidence 86544
No 47
>PF02913 FAD-oxidase_C: FAD linked oxidases, C-terminal domain; InterPro: IPR004113 Some oxygen-dependent oxidoreductases are flavoproteins that contain a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. The region around the histidine that binds the FAD group is conserved in these enzymes (see IPR006093 from INTERPRO).; GO: 0003824 catalytic activity, 0050660 flavin adenine dinucleotide binding; PDB: 1WVE_B 1DII_B 1WVF_A 1DIQ_A 2UUU_B 2UUV_A 1W1M_A 1E8H_B 1E0Y_B 1DZN_B ....
Probab=77.34 E-value=3.1 Score=40.22 Aligned_cols=28 Identities=18% Similarity=0.279 Sum_probs=19.9
Q ss_pred hhhhhccc-cHHHHHHhhcccCCCCCCCC
Q 009297 497 YGINYFLE-NFDRLVEIKTKVDPDNFFRN 524 (538)
Q Consensus 497 ~~~~yyg~-n~~RL~~IK~kYDP~~vF~~ 524 (538)
|-..++|+ .+.-+++||+.+||+|+++-
T Consensus 217 ~~~~~~~~~~~~~~~~iK~~~DP~~ilNP 245 (248)
T PF02913_consen 217 YLEEEYGPAALRLMRAIKQAFDPNGILNP 245 (248)
T ss_dssp HHCHHCHHHHHHHHHHHHHHH-TTS-BST
T ss_pred HHHHhcchHHHHHHHHhhhccCCccCCCC
Confidence 33344555 69999999999999999863
No 48
>TIGR02969 mam_aldehyde_ox aldehyde oxidase. Members of this family are mammalian aldehyde oxidase (EC 1.2.3.1) isozymes, closely related to xanthine dehydrogenase/oxidase.
Probab=74.11 E-value=7.5 Score=47.70 Aligned_cols=78 Identities=13% Similarity=0.076 Sum_probs=54.5
Q ss_pred cEEEEcCCHHHHHHHHHHHHhCCCcEEEEecCcCCCCCc-cccCCCeEEEEecCcccE-EEcCCCCeEEEeCCccHHHHH
Q 009297 81 VLIVAAMHESHVQAAIICAKKHNLQMKIRSGGHDYEGLS-YVSNVPFFILDMFNLRSI-DVDIESETAWVQAGAILGEVF 158 (538)
Q Consensus 81 ~~vv~p~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~s-~~~~~~g~vIdl~~l~~i-~~d~~~~~v~v~~G~~~~~l~ 158 (538)
.-++.|+|.+|+.++++- +. .-.+..||+++.-.- ........+||++++..+ .+..+++.+++|+++++.++.
T Consensus 237 ~~~~~P~tl~ea~~ll~~---~~-~a~lvAGGTdl~~~~k~~~~~~~~lIdi~~I~EL~~i~~~~~~l~IGA~vT~~el~ 312 (1330)
T TIGR02969 237 MMWISPVTLKELLEAKFK---YP-QAPVVMGNTSVGPEVKFKGVFHPVIISPDRIEELSVVNHTGDGLTLGAGLSLAQVK 312 (1330)
T ss_pred ceEECCCCHHHHHHHHHh---CC-CCEEEecCcchHHHhhhccCCCCeEEECCCChhhhcEEEcCCEEEEeccccHHHHH
Confidence 358999999999887653 22 356788999974211 011122478999976655 344456799999999999998
Q ss_pred HHHH
Q 009297 159 YRIA 162 (538)
Q Consensus 159 ~~l~ 162 (538)
+.|.
T Consensus 313 ~~l~ 316 (1330)
T TIGR02969 313 DILA 316 (1330)
T ss_pred HHHH
Confidence 8654
No 49
>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase. This model represents an uncharacterized plant-specific family of FAD-dependent oxidoreductases. At least seven distinct members are found in Arabidopsis thaliana. The family shows considerable sequence similarity to three different enzymes of ascorbic acid biosynthesis: L-galactono-1,4-lactone dehydrogenase (EC 1.3.2.3) from higher plants, D-arabinono-1,4-lactone oxidase (EC 1.1.3.37 from Saccharomyces cerevisiae, and L-gulonolactone oxidase (EC 1.1.3.8) from mouse, as well as to a bacterial sorbitol oxidase. The class of compound acted on by members of this family is unknown.
Probab=66.92 E-value=9.4 Score=42.29 Aligned_cols=22 Identities=32% Similarity=0.685 Sum_probs=20.2
Q ss_pred ccHHHHHHhhcccCCCCCCCCC
Q 009297 504 ENFDRLVEIKTKVDPDNFFRNE 525 (538)
Q Consensus 504 ~n~~RL~~IK~kYDP~~vF~~~ 525 (538)
.++++.++|++++||+++|.++
T Consensus 482 P~~~dF~alR~~~DP~g~F~N~ 503 (557)
T TIGR01677 482 PNADKFLKVKDSYDPKGLFSSE 503 (557)
T ss_pred CCHHHHHHHHHhcCCCCccCCH
Confidence 4899999999999999999876
No 50
>COG1319 CoxM Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion]
Probab=64.21 E-value=20 Score=36.13 Aligned_cols=75 Identities=17% Similarity=0.138 Sum_probs=51.3
Q ss_pred ccEEEEcCCHHHHHHHHHHHHhCCCcEEEEecCcCCCCCccc-cCCCeEEEEecCcc-cE-EEcCCCCeEEEeCCccHHH
Q 009297 80 PVLIVAAMHESHVQAAIICAKKHNLQMKIRSGGHDYEGLSYV-SNVPFFILDMFNLR-SI-DVDIESETAWVQAGAILGE 156 (538)
Q Consensus 80 p~~vv~p~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~s~~-~~~~g~vIdl~~l~-~i-~~d~~~~~v~v~~G~~~~~ 156 (538)
+..+.+|.|.+|...+++ +++ --.+.+|||++...--. -....-+||++++. .. .+..+++.+++|+-+++.|
T Consensus 3 ~f~y~rp~Sv~eA~~ll~---~~~-~a~~laGGt~L~~~~k~~~~~p~~lVdI~~l~~~~~~~~~~g~~l~IGA~vt~~e 78 (284)
T COG1319 3 NFEYYRPASVEEALNLLA---RAP-DAKYLAGGTDLLPLMKLGIERPDHLVDINGLDELLGIVTTEGGSLRIGALVTLTE 78 (284)
T ss_pred ceEEECCCCHHHHHHHHH---hCC-CcEEeeCcchHHHHhhcccCCcceEEEecCChhhhceEeecCCEEEEeecccHHH
Confidence 456789999888766554 455 67888999997632100 11235779998874 22 2334567799999999999
Q ss_pred HH
Q 009297 157 VF 158 (538)
Q Consensus 157 l~ 158 (538)
+.
T Consensus 79 i~ 80 (284)
T COG1319 79 IA 80 (284)
T ss_pred HH
Confidence 86
No 51
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=62.93 E-value=7.6 Score=41.37 Aligned_cols=28 Identities=25% Similarity=0.443 Sum_probs=23.0
Q ss_pred hhhhhcc-ccHHHHHHhhcccCCCCCCCC
Q 009297 497 YGINYFL-ENFDRLVEIKTKVDPDNFFRN 524 (538)
Q Consensus 497 ~~~~yyg-~n~~RL~~IK~kYDP~~vF~~ 524 (538)
|-...|+ ..++-|++||+.+||+|+++-
T Consensus 383 ~~~~~~~~~~~~~~~~iK~~fDP~~ilNP 411 (413)
T TIGR00387 383 FMPYKFNEKELETMRAIKKAFDPDNILNP 411 (413)
T ss_pred HHHHhcCHHHHHHHHHHHHHcCcCcCCCC
Confidence 5555566 479999999999999999863
No 52
>TIGR01679 bact_FAD_ox FAD-linked oxidoreductase. This model represents a family of bacterial oxidoreductases with covalently linked FAD, closely related to two different eukaryotic oxidases, L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae.
Probab=57.79 E-value=5.3 Score=42.65 Aligned_cols=25 Identities=24% Similarity=0.534 Sum_probs=21.4
Q ss_pred hccccHHHHHHhhcccCCCCCCCCCC
Q 009297 501 YFLENFDRLVEIKTKVDPDNFFRNEQ 526 (538)
Q Consensus 501 yyg~n~~RL~~IK~kYDP~~vF~~~q 526 (538)
.|+ ++++..++|++|||+++|.+.+
T Consensus 389 ~YP-~~~~F~~~r~~~DP~g~F~n~~ 413 (419)
T TIGR01679 389 RYP-RWDDFAAVRDDLDPDRRFLNPY 413 (419)
T ss_pred HCc-CHHHHHHHHHHhCCCCccCCHH
Confidence 344 7999999999999999998764
No 53
>PLN02805 D-lactate dehydrogenase [cytochrome]
Probab=56.98 E-value=19 Score=39.94 Aligned_cols=33 Identities=24% Similarity=0.356 Sum_probs=26.8
Q ss_pred chhhhhcc-ccHHHHHHhhcccCCCCCCCCCCCC
Q 009297 496 AYGINYFL-ENFDRLVEIKTKVDPDNFFRNEQSI 528 (538)
Q Consensus 496 ~~~~~yyg-~n~~RL~~IK~kYDP~~vF~~~q~I 528 (538)
.|-..+|| +.++-+++||+.+||+|+++-..=+
T Consensus 516 ~~l~~~~g~~~~~lm~~IK~a~DP~gILNPGKi~ 549 (555)
T PLN02805 516 KYLEKELGIEALQTMKRIKKALDPNNIMNPGKLI 549 (555)
T ss_pred HHHHHhcCHHHHHHHHHHHHHhCcCcCCCCCcee
Confidence 47777777 4799999999999999999765544
No 54
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=52.62 E-value=29 Score=37.72 Aligned_cols=106 Identities=21% Similarity=0.255 Sum_probs=65.2
Q ss_pred hHHhhhccCCCCCCCCcceEeCCCCCCcHHHHHhhhhccccCCCCCCCccEEEEcCCHHHHHHHHHHHHhC-CCcEEE--
Q 009297 32 SFHQCLLNNSPPSHPIFQAIHTPQNSSYSSVLQSYIRNLRFNTSSTPKPVLIVAAMHESHVQAAIICAKKH-NLQMKI-- 108 (538)
Q Consensus 32 ~~~~cl~~~~~~~~~~~~~v~~p~~~~y~~~~~~~~~n~r~~~~~~~~p~~vv~p~s~~dv~~~v~~a~~~-~~~~~~-- 108 (538)
.|.+-+.+.+ -+|.+.++.-+-|+-+.+.. +...+ .....|-..+.|.|.++|..+|+.|+++ ..|+.+
T Consensus 112 rLv~kara~G---~~I~gvvIsAGIP~le~A~E-lI~~L----~~~G~~yv~fKPGtIeqI~svi~IAka~P~~pIilq~ 183 (717)
T COG4981 112 RLVQKARASG---APIDGVVISAGIPSLEEAVE-LIEEL----GDDGFPYVAFKPGTIEQIRSVIRIAKANPTFPIILQW 183 (717)
T ss_pred HHHHHHHhcC---CCcceEEEecCCCcHHHHHH-HHHHH----hhcCceeEEecCCcHHHHHHHHHHHhcCCCCceEEEE
Confidence 3555555543 34688899888888887743 33221 1235788999999999999999999997 456655
Q ss_pred ---EecCcC-CCCCccccCCCeEEEEe-cCcccEEEcCCCCeEEEeCCccHH
Q 009297 109 ---RSGGHD-YEGLSYVSNVPFFILDM-FNLRSIDVDIESETAWVQAGAILG 155 (538)
Q Consensus 109 ---~ggGh~-~~g~s~~~~~~g~vIdl-~~l~~i~~d~~~~~v~v~~G~~~~ 155 (538)
|+|||. |... +..+|-+ +.+++. ++=++.+|+|.-..
T Consensus 184 egGraGGHHSweDl------d~llL~tYs~lR~~----~NIvl~vGgGiGtp 225 (717)
T COG4981 184 EGGRAGGHHSWEDL------DDLLLATYSELRSR----DNIVLCVGGGIGTP 225 (717)
T ss_pred ecCccCCccchhhc------ccHHHHHHHHHhcC----CCEEEEecCCcCCh
Confidence 345554 5533 1133222 233321 23356778887553
No 55
>KOG4730 consensus D-arabinono-1, 4-lactone oxidase [Defense mechanisms]
Probab=50.70 E-value=7.9 Score=40.96 Aligned_cols=20 Identities=25% Similarity=0.838 Sum_probs=18.9
Q ss_pred ccHHHHHHhhcccCCCCCCC
Q 009297 504 ENFDRLVEIKTKVDPDNFFR 523 (538)
Q Consensus 504 ~n~~RL~~IK~kYDP~~vF~ 523 (538)
.|+++-.++|+++||+++|.
T Consensus 485 ~n~~~flkvr~~lDP~~lFs 504 (518)
T KOG4730|consen 485 KNLDKFLKVRKELDPKGLFS 504 (518)
T ss_pred cChHHHHHHHHhcCccchhh
Confidence 69999999999999999994
No 56
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=50.24 E-value=20 Score=39.21 Aligned_cols=33 Identities=21% Similarity=0.392 Sum_probs=25.5
Q ss_pred hhhhhcc-ccHHHHHHhhcccCCCCCCCCCCCCC
Q 009297 497 YGINYFL-ENFDRLVEIKTKVDPDNFFRNEQSIP 529 (538)
Q Consensus 497 ~~~~yyg-~n~~RL~~IK~kYDP~~vF~~~q~I~ 529 (538)
|-...|| +.++-+++||+.+||+|+++-..-++
T Consensus 440 ~l~~~~g~~~~~~m~~IK~~fDP~~iLNPGk~~~ 473 (499)
T PRK11230 440 QMCAQFNSDEITLFHAVKAAFDPDGLLNPGKNIP 473 (499)
T ss_pred HHHHhcCHHHHHHHHHHHHHcCCCcCCCCCeEeC
Confidence 4344556 57999999999999999998665554
No 57
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=36.91 E-value=51 Score=33.63 Aligned_cols=58 Identities=19% Similarity=0.296 Sum_probs=39.7
Q ss_pred ceEeCCCCCCcHHHHHhhhhccccCCCCCCCccEEEEcCC------HHHHHHHHHHHHhCC------CcEEEEecCc
Q 009297 49 QAIHTPQNSSYSSVLQSYIRNLRFNTSSTPKPVLIVAAMH------ESHVQAAIICAKKHN------LQMKIRSGGH 113 (538)
Q Consensus 49 ~~v~~p~~~~y~~~~~~~~~n~r~~~~~~~~p~~vv~p~s------~~dv~~~v~~a~~~~------~~~~~~ggGh 113 (538)
+.|.-|....|.+.+... +.||. ....+++|.. +++|.++++.+.+.+ +=+.+||||+
T Consensus 18 ~vITs~~gAa~~D~~~~~--~~r~~-----~~~~~~~p~~vQG~~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs 87 (319)
T PF02601_consen 18 AVITSPTGAAIQDFLRTL--KRRNP-----IVEIILYPASVQGEGAAASIVSALRKANEMGQADDFDVIIIIRGGGS 87 (319)
T ss_pred EEEeCCchHHHHHHHHHH--HHhCC-----CcEEEEEeccccccchHHHHHHHHHHHHhccccccccEEEEecCCCC
Confidence 444457777788876532 33663 4556777765 689999999998654 6678888884
No 58
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional
Probab=36.66 E-value=21 Score=37.21 Aligned_cols=22 Identities=18% Similarity=0.276 Sum_probs=18.4
Q ss_pred ccc-HHHHHHhhcccCCCCCCCC
Q 009297 503 LEN-FDRLVEIKTKVDPDNFFRN 524 (538)
Q Consensus 503 g~n-~~RL~~IK~kYDP~~vF~~ 524 (538)
..+ .+-.++||+++||.++|+-
T Consensus 323 ~~~~~~l~~~lK~~fDP~~ilnp 345 (352)
T PRK11282 323 PAPLLRIHRRLKQAFDPAGIFNP 345 (352)
T ss_pred CHHHHHHHHHHHHhcCcccCCCC
Confidence 345 6888999999999999974
No 59
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=30.07 E-value=56 Score=30.65 Aligned_cols=25 Identities=20% Similarity=0.259 Sum_probs=21.9
Q ss_pred HHHHHHHHHhCCCcEEEEecCcCCC
Q 009297 92 VQAAIICAKKHNLQMKIRSGGHDYE 116 (538)
Q Consensus 92 v~~~v~~a~~~~~~~~~~ggGh~~~ 116 (538)
....++|++++++||.|.++|.++.
T Consensus 78 fKef~e~ike~di~fiVvSsGm~~f 102 (220)
T COG4359 78 FKEFVEWIKEHDIPFIVVSSGMDPF 102 (220)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCchH
Confidence 4567889999999999999999965
No 60
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=26.90 E-value=78 Score=33.95 Aligned_cols=57 Identities=23% Similarity=0.318 Sum_probs=39.6
Q ss_pred ceEeCCCCCCcHHHHHhhhhccccCCCCCCCccEEEEcCCH------HHHHHHHHHHHhC--CCcEEEEecC
Q 009297 49 QAIHTPQNSSYSSVLQSYIRNLRFNTSSTPKPVLIVAAMHE------SHVQAAIICAKKH--NLQMKIRSGG 112 (538)
Q Consensus 49 ~~v~~p~~~~y~~~~~~~~~n~r~~~~~~~~p~~vv~p~s~------~dv~~~v~~a~~~--~~~~~~~ggG 112 (538)
+.|.-|....+.+.+.. -+.||. .-...++|..+ .+|.++++.+.+. ++=+.+||||
T Consensus 139 ~viTs~~gAa~~D~~~~--~~~r~p-----~~~~~~~~~~vQG~~A~~~i~~al~~~~~~~~Dviii~RGGG 203 (438)
T PRK00286 139 GVITSPTGAAIRDILTV--LRRRFP-----LVEVIIYPTLVQGEGAAASIVAAIERANARGEDVLIVARGGG 203 (438)
T ss_pred EEEeCCccHHHHHHHHH--HHhcCC-----CCeEEEecCcCcCccHHHHHHHHHHHhcCCCCCEEEEecCCC
Confidence 44445677778877653 245664 34567777765 7999999888874 6678888888
No 61
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=24.67 E-value=3.5e+02 Score=28.80 Aligned_cols=34 Identities=26% Similarity=0.334 Sum_probs=32.1
Q ss_pred CccEEEEcCCHHHHHHHHHHHHhCCCcEEEEecC
Q 009297 79 KPVLIVAAMHESHVQAAIICAKKHNLQMKIRSGG 112 (538)
Q Consensus 79 ~p~~vv~p~s~~dv~~~v~~a~~~~~~~~~~ggG 112 (538)
....|+.|+..|-...+.+.++++|+++.-|+.|
T Consensus 260 ~~llIlVPRHpERf~~v~~l~~~~gl~~~~rS~~ 293 (419)
T COG1519 260 NLLLILVPRHPERFKAVENLLKRKGLSVTRRSQG 293 (419)
T ss_pred CceEEEecCChhhHHHHHHHHHHcCCeEEeecCC
Confidence 5678999999999999999999999999999998
No 62
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included
Probab=24.17 E-value=1.1e+02 Score=27.55 Aligned_cols=30 Identities=17% Similarity=0.159 Sum_probs=26.4
Q ss_pred cEEEEcCCHHHHHHHHHHHHhCCCcEEEEe
Q 009297 81 VLIVAAMHESHVQAAIICAKKHNLQMKIRS 110 (538)
Q Consensus 81 ~~vv~p~s~~dv~~~v~~a~~~~~~~~~~g 110 (538)
..|+.|.+.+|+..+++.|-+.+-|+.+|=
T Consensus 125 ~~v~~Ps~~~~~~~ll~~a~~~~~P~~irl 154 (156)
T cd07033 125 MTVLRPADANETAAALEAALEYDGPVYIRL 154 (156)
T ss_pred CEEEecCCHHHHHHHHHHHHhCCCCEEEEe
Confidence 368999999999999999998887888873
No 63
>PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 2BFF_B 2BEV_B 1OLS_B 1V16_B 2BFD_B 1V1M_B 2BFC_B 1X80_B 1X7W_B 1OLX_B ....
Probab=21.20 E-value=1.4e+02 Score=27.48 Aligned_cols=32 Identities=13% Similarity=0.152 Sum_probs=26.7
Q ss_pred cEEEEcCCHHHHHHHHHHHHh--CCCcEEEEecC
Q 009297 81 VLIVAAMHESHVQAAIICAKK--HNLQMKIRSGG 112 (538)
Q Consensus 81 ~~vv~p~s~~dv~~~v~~a~~--~~~~~~~~ggG 112 (538)
..|+.|.+.+|+..+++.+-+ .+-|+.+|-.-
T Consensus 139 ~~v~~Psd~~e~~~~l~~a~~~~~~~P~~ir~~r 172 (178)
T PF02779_consen 139 MKVVVPSDPAEAKGLLRAAIRRESDGPVYIREPR 172 (178)
T ss_dssp EEEEE-SSHHHHHHHHHHHHHSSSSSEEEEEEES
T ss_pred cccccCCCHHHHHHHHHHHHHhCCCCeEEEEeeH
Confidence 469999999999999999999 56898888643
No 64
>COG0351 ThiD Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [Coenzyme metabolism]
Probab=20.54 E-value=3.2e+02 Score=27.17 Aligned_cols=92 Identities=12% Similarity=0.057 Sum_probs=58.6
Q ss_pred cceEeCCCCCCcHHHHHhhhhccccCCCCCCCccEEEEcCCHHHHHHHHHHHHhCCCcEEEEecCcCCCCCccccCCCeE
Q 009297 48 FQAIHTPQNSSYSSVLQSYIRNLRFNTSSTPKPVLIVAAMHESHVQAAIICAKKHNLQMKIRSGGHDYEGLSYVSNVPFF 127 (538)
Q Consensus 48 ~~~v~~p~~~~y~~~~~~~~~n~r~~~~~~~~p~~vv~p~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~s~~~~~~g~ 127 (538)
...|++|+-++.+.... . ...++.+|+.++-+...+.|.+-++.=|||... .+ ..+
T Consensus 132 ~a~vvTPNl~EA~~L~g--------------~----~~i~~~~d~~~a~~~i~~~g~~~VliKGGH~~~-~~-----~D~ 187 (263)
T COG0351 132 LATVVTPNLPEAEALSG--------------L----PKIKTEEDMKEAAKLLHELGAKAVLIKGGHLEG-EA-----VDV 187 (263)
T ss_pred cCeEecCCHHHHHHHcC--------------C----CccCCHHHHHHHHHHHHHhCCCEEEEcCCCCCC-Cc-----eeE
Confidence 36788998887765421 1 378899999999999999999888888889865 21 124
Q ss_pred EEEecCcccE---EEcCCCCeEEEeCCccHHHHHHHHHHhCC
Q 009297 128 ILDMFNLRSI---DVDIESETAWVQAGAILGEVFYRIAEKSK 166 (538)
Q Consensus 128 vIdl~~l~~i---~~d~~~~~v~v~~G~~~~~l~~~l~~~g~ 166 (538)
+.|-..+..+ .++.. =+=|.|+++.-....-..+|.
T Consensus 188 l~~~~~~~~f~~~ri~t~---~tHGTGCTlSaAIaa~LA~G~ 226 (263)
T COG0351 188 LYDGGSFYTFEAPRIPTK---NTHGTGCTLSAAIAANLAKGL 226 (263)
T ss_pred EEcCCceEEEeccccCCC---CCCCccHHHHHHHHHHHHcCC
Confidence 4443312111 12111 246889998766655545554
No 65
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=20.32 E-value=1.3e+02 Score=26.02 Aligned_cols=36 Identities=17% Similarity=0.256 Sum_probs=28.9
Q ss_pred CccEEEEcCCHHHHHHHHHHHHhCCCcEEEEecCcC
Q 009297 79 KPVLIVAAMHESHVQAAIICAKKHNLQMKIRSGGHD 114 (538)
Q Consensus 79 ~p~~vv~p~s~~dv~~~v~~a~~~~~~~~~~ggGh~ 114 (538)
.+++++.-++.+.+...+++|.++++|+.+--+|.+
T Consensus 67 ~~DVvIDfT~p~~~~~~~~~~~~~g~~~ViGTTG~~ 102 (124)
T PF01113_consen 67 EADVVIDFTNPDAVYDNLEYALKHGVPLVIGTTGFS 102 (124)
T ss_dssp H-SEEEEES-HHHHHHHHHHHHHHT-EEEEE-SSSH
T ss_pred cCCEEEEcCChHHhHHHHHHHHhCCCCEEEECCCCC
Confidence 388999999999999999999999999999777764
Done!