Your job contains 1 sequence.
>009298
MRFELLSARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAA
SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN
GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH
STADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKE
GLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQ
FNEDKVRAPSDPTQKTLTNFMTSGHASKKIVGDQNSLGSDINDDCLIDDKETSVSLDVSE
TNNYEFGDPVCDNSLPDLNDENCSFSNKISEVEKIHENEVSQLLEGNSLVLRQEEGSCCD
GVEEVDKDITPDNKVGTSSNQKDQFIWLDDYKCSLCGTEMPPSFIEERQEHSDFHLAERL
QKEESGSDLRILTHRERCVRTQRDHIASHRKRKKQKLFEKEGTHIPIDMFFAKRNRNF
The BLAST search returned 5 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 009298
(538 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2031050 - symbol:AT1G49980 species:3702 "Arabi... 1476 2.9e-151 1
ZFIN|ZDB-GENE-060526-137 - symbol:polk "polymerase (DNA d... 458 9.4e-69 3
UNIPROTKB|J9P5L3 - symbol:POLK "Uncharacterized protein" ... 476 6.4e-68 3
UNIPROTKB|E2RAS5 - symbol:POLK "Uncharacterized protein" ... 474 1.2e-67 3
UNIPROTKB|Q5Q9G8 - symbol:POLK "Polymerase kappa isoform ... 475 2.6e-66 2
UNIPROTKB|G3V8W7 - symbol:Polk "Protein Polk" species:101... 471 6.3e-66 2
UNIPROTKB|Q9UBT6 - symbol:POLK "DNA polymerase kappa" spe... 475 7.2e-66 2
MGI|MGI:1349767 - symbol:Polk "polymerase (DNA directed),... 464 3.8e-65 2
UNIPROTKB|F1S2I2 - symbol:POLK "Uncharacterized protein" ... 468 4.5e-65 2
UNIPROTKB|Q8AWW1 - symbol:DINB1 "Uncharacterized protein"... 440 2.2e-64 3
UNIPROTKB|A6QNV6 - symbol:POLK "Uncharacterized protein" ... 459 7.1e-64 2
UNIPROTKB|F1NCT8 - symbol:POLK "Uncharacterized protein" ... 433 1.3e-63 3
UNIPROTKB|E9PST4 - symbol:Polk "Protein Polk" species:101... 633 6.2e-62 1
UNIPROTKB|F1NCT7 - symbol:POLK "Uncharacterized protein" ... 416 6.1e-60 2
UNIPROTKB|D6RAE5 - symbol:POLK "DNA polymerase kappa" spe... 378 2.6e-57 2
UNIPROTKB|Q5Q9G5 - symbol:POLK "DNA polymerase kappa" spe... 378 2.6e-57 2
UNIPROTKB|Q5Q9G7 - symbol:POLK "DNA polymerase kappa" spe... 378 2.6e-57 2
WB|WBGene00017696 - symbol:polk-1 species:6239 "Caenorhab... 422 1.1e-56 2
UNIPROTKB|D6R9M8 - symbol:POLK "DNA polymerase kappa" spe... 340 9.5e-53 2
UNIPROTKB|F1MAB3 - symbol:Polk "Protein Polk" species:101... 471 1.2e-52 2
ASPGD|ASPL0000039840 - symbol:AN3373 species:162425 "Emer... 526 1.3e-50 1
POMBASE|SPCC553.07c - symbol:kpa1 "DinB translesion DNA r... 479 1.3e-45 1
UNIPROTKB|E9PST3 - symbol:Polk "Protein Polk" species:101... 397 4.8e-36 1
UNIPROTKB|Q47155 - symbol:dinB species:83333 "Escherichia... 360 5.8e-33 1
UNIPROTKB|Q8EHU9 - symbol:dinB "DNA polymerase IV" specie... 359 7.6e-33 1
TIGR_CMR|SO_1114 - symbol:SO_1114 "DNA-damage-inducible p... 359 7.6e-33 1
UNIPROTKB|Q71Y46 - symbol:dinB "DNA polymerase IV" specie... 355 2.3e-32 1
UNIPROTKB|Q83EN5 - symbol:dinP "DNA polymerase IV" specie... 348 1.6e-31 1
TIGR_CMR|CBU_0280 - symbol:CBU_0280 "DNA-damage-inducible... 348 1.6e-31 1
TIGR_CMR|CPS_1040 - symbol:CPS_1040 "DNA polymerase IV" s... 323 9.5e-31 2
UNIPROTKB|Q74CQ6 - symbol:dinB "DNA polymerase IV" specie... 331 1.4e-29 1
TIGR_CMR|GSU_1616 - symbol:GSU_1616 "ImpB/MucB/SamB famil... 331 1.4e-29 1
UNIPROTKB|Q3ZAI3 - symbol:dinB "DNA polymerase IV" specie... 325 6.8e-29 1
TIGR_CMR|DET_0011 - symbol:DET_0011 "DNA polymerase IV, p... 325 6.8e-29 1
DICTYBASE|DDB_G0287149 - symbol:DDB_G0287149 "UMUC-like D... 336 2.3e-28 1
TIGR_CMR|CHY_1651 - symbol:CHY_1651 "DNA polymerase IV - ... 315 9.0e-28 1
UNIPROTKB|Q9KPS5 - symbol:dinB "DNA polymerase IV" specie... 307 7.0e-27 1
TIGR_CMR|VC_2287 - symbol:VC_2287 "DNA-damage-inducible p... 307 7.0e-27 1
UNIPROTKB|Q81M86 - symbol:dinB "DNA polymerase IV" specie... 297 8.2e-25 1
TIGR_CMR|BA_4366 - symbol:BA_4366 "DNA-damage-inducible p... 297 8.2e-25 1
UNIPROTKB|Q74H50 - symbol:dinB "DNA polymerase IV" specie... 295 2.0e-24 1
TIGR_CMR|GSU_0043 - symbol:GSU_0043 "ImpB/MucB/SamB famil... 295 2.0e-24 1
UNIPROTKB|Q0BZW2 - symbol:dinB "DNA polymerase IV" specie... 290 1.6e-23 1
FB|FBgn0035150 - symbol:Rev1 "Rev1" species:7227 "Drosoph... 252 5.2e-18 1
ZFIN|ZDB-GENE-081105-180 - symbol:si:dkey-57a22.7 "si:dke... 250 1.2e-17 1
UNIPROTKB|P63987 - symbol:dinB2 "DNA polymerase IV 2" spe... 235 1.5e-17 1
UNIPROTKB|E2RC81 - symbol:POLH "Uncharacterized protein" ... 151 8.1e-17 3
UNIPROTKB|D4A662 - symbol:Polk "Protein Polk" species:101... 233 1.1e-16 1
UNIPROTKB|Q9Y253 - symbol:POLH "DNA polymerase eta" speci... 159 2.2e-16 3
TIGR_CMR|SPO_3280 - symbol:SPO_3280 "DNA polymerase IV, p... 226 6.1e-16 1
UNIPROTKB|E2RPL9 - symbol:REV1 "Uncharacterized protein" ... 231 1.5e-15 1
UNIPROTKB|F1P5H4 - symbol:REV1 "DNA repair protein REV1" ... 230 1.9e-15 1
UNIPROTKB|Q4KWZ7 - symbol:REV1 "DNA repair protein REV1" ... 230 1.9e-15 1
TAIR|locus:2156319 - symbol:REV1 species:3702 "Arabidopsi... 227 3.4e-15 1
UNIPROTKB|F1N787 - symbol:REV1 "Uncharacterized protein" ... 223 1.0e-14 1
UNIPROTKB|B4DG64 - symbol:POLH "DNA polymerase eta" speci... 159 1.0e-14 3
MGI|MGI:1891457 - symbol:Polh "polymerase (DNA directed),... 149 2.1e-14 3
UNIPROTKB|Q9UBZ9 - symbol:REV1 "DNA repair protein REV1" ... 220 2.3e-14 1
UNIPROTKB|F1STE9 - symbol:REV1 "Uncharacterized protein" ... 220 2.3e-14 1
RGD|1309893 - symbol:Polh "polymerase (DNA directed), eta... 149 5.3e-14 3
UNIPROTKB|J3KTN3 - symbol:POLI "DNA polymerase iota" spec... 148 5.7e-14 2
MGI|MGI:1929074 - symbol:Rev1 "REV1 homolog (S. cerevisia... 213 1.3e-13 1
TAIR|locus:2156309 - symbol:POLH "Y-family DNA polymerase... 182 2.6e-13 2
RGD|1306715 - symbol:Rev1 "REV1, polymerase (DNA directed... 209 3.2e-13 1
ZFIN|ZDB-GENE-060421-4949 - symbol:polh "polymerase (DNA ... 147 7.2e-13 4
UNIPROTKB|F1MZ79 - symbol:POLH "Uncharacterized protein" ... 134 1.3e-12 3
MGI|MGI:1347081 - symbol:Poli "polymerase (DNA directed),... 157 3.6e-12 3
UNIPROTKB|F1PDA5 - symbol:POLI "Uncharacterized protein" ... 156 3.7e-12 2
FB|FBgn0037141 - symbol:DNApol-eta "DNApol-eta" species:7... 177 4.2e-12 2
UNIPROTKB|P63985 - symbol:dinB1 "DNA polymerase IV 1" spe... 193 4.2e-12 1
CGD|CAL0001748 - symbol:orf19.4412 species:5476 "Candida ... 195 1.1e-11 1
UNIPROTKB|Q9UNA4 - symbol:POLI "DNA polymerase iota" spec... 152 1.2e-11 2
ASPGD|ASPL0000012133 - symbol:AN3909 species:162425 "Emer... 202 1.5e-11 2
ZFIN|ZDB-GENE-050417-376 - symbol:poli "polymerase (DNA d... 153 2.1e-11 2
RGD|1305212 - symbol:Poli "polymerase (DNA directed), iot... 146 1.1e-10 2
UNIPROTKB|J3KSW2 - symbol:POLI "DNA polymerase iota" spec... 152 2.7e-10 2
FB|FBgn0037554 - symbol:DNApol-iota "DNApol-iota" species... 144 3.4e-09 3
POMBASE|SPBC1347.01c - symbol:rev1 "deoxycytidyl transfer... 168 7.3e-09 1
WB|WBGene00014066 - symbol:rev-1 species:6239 "Caenorhabd... 168 8.3e-09 1
UNIPROTKB|F1RRJ6 - symbol:POLH "Uncharacterized protein" ... 133 1.4e-08 3
ASPGD|ASPL0000072145 - symbol:AN4678 species:162425 "Emer... 153 1.8e-08 2
UNIPROTKB|J3QR36 - symbol:POLI "DNA polymerase iota" spec... 100 5.5e-08 2
UNIPROTKB|G5EH81 - symbol:MGCH7_ch7g688 "Sister chromatid... 132 1.2e-07 3
UNIPROTKB|F1MHR0 - symbol:POLI "Uncharacterized protein" ... 160 2.5e-07 2
WB|WBGene00018721 - symbol:polh-1 species:6239 "Caenorhab... 112 3.3e-07 3
UNIPROTKB|J3KRG0 - symbol:POLI "DNA polymerase iota" spec... 124 5.7e-07 1
UNIPROTKB|F1NCM3 - symbol:POLH "Uncharacterized protein" ... 144 8.3e-07 2
UNIPROTKB|F1NAG6 - symbol:POLH "Uncharacterized protein" ... 144 9.4e-07 2
POMBASE|SPBC16A3.11 - symbol:eso1 "sister chromatid cohes... 130 1.0e-06 3
UNIPROTKB|Q81NC2 - symbol:BAS3053 "ImpB/mucB/samB family ... 125 0.00011 1
TIGR_CMR|BA_3288 - symbol:BA_3288 "impB/mucB/samB family ... 125 0.00011 1
UNIPROTKB|P04152 - symbol:umuC species:83333 "Escherichia... 125 0.00011 1
UNIPROTKB|I3LUT8 - symbol:LOC100737500 "Uncharacterized p... 114 0.00024 1
UNIPROTKB|Q8E897 - symbol:rulB "SO_S mutagenesis protein ... 118 0.00065 1
TIGR_CMR|SO_A0012 - symbol:SO_A0012 "SO_S mutagenesis pro... 118 0.00065 1
CGD|CAL0002818 - symbol:RAD32 species:5476 "Candida albic... 121 0.00090 3
>TAIR|locus:2031050 [details] [associations]
symbol:AT1G49980 species:3702 "Arabidopsis thaliana"
[GO:0003684 "damaged DNA binding" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0006281 "DNA repair"
evidence=IEA;ISS] [GO:0016020 "membrane" evidence=IDA]
HAMAP:MF_01113 InterPro:IPR001126 InterPro:IPR017961
InterPro:IPR017963 InterPro:IPR022880 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 EMBL:CP002684 GO:GO:0016020 GO:GO:0003684
GO:GO:0006281 GO:GO:0003887 Gene3D:3.30.1490.100 SUPFAM:SSF100879
KO:K03511 OMA:VHVDCDA HOGENOM:HOG000082709 EMBL:AY508701
IPI:IPI00540157 RefSeq:NP_175420.3 UniGene:At.43723 HSSP:Q97W02
ProteinModelPortal:Q6JDV7 SMR:Q6JDV7 EnsemblPlants:AT1G49980.1
GeneID:841422 KEGG:ath:AT1G49980 TAIR:At1g49980 InParanoid:Q6JDV7
PhylomeDB:Q6JDV7 ProtClustDB:CLSN2681525 Genevestigator:Q6JDV7
Uniprot:Q6JDV7
Length = 671
Score = 1476 (524.6 bits), Expect = 2.9e-151, P = 2.9e-151
Identities = 312/534 (58%), Positives = 382/534 (71%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVRAAMPGFIARKLCP+LIFVP DFTKYT+YSDLTRKVF YDP+F+A SLDEAYL
Sbjct: 145 ARKFGVRAAMPGFIARKLCPDLIFVPVDFTKYTHYSDLTRKVFRNYDPHFIAGSLDEAYL 204
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
DITEVCRERG+SG EIAEELR+SVY E GLTCSAGVA NRLLAKVCSDINKPNGQFVL N
Sbjct: 205 DITEVCRERGLSGGEIAEELRSSVYSETGLTCSAGVAANRLLAKVCSDINKPNGQFVLQN 264
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
DR VMTF+S LP+RKIGGIGKVTEHIL+D GI TCEEM+QKGSLL A+FS S+ADFFL
Sbjct: 265 DRSTVMTFVSFLPVRKIGGIGKVTEHILKDALGIKTCEEMVQKGSLLYALFSQSSADFFL 324
Query: 188 SVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEXXXXXXX 247
SVGLGLG TNTPQ R RKSISSERTF+ T D+ LLY KL E+AEMLS DM+KE
Sbjct: 325 SVGLGLGGTNTPQVRSRKSISSERTFAATGDERLLYSKLDELAEMLSHDMKKEGLTARTL 384
Query: 248 XXXXXXASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQFNEDKVR 307
ASFE+R+RAV+LQ+Y SS+DILKHA+ LLKAELPVS+RLIGLR++QF E+ +R
Sbjct: 385 TLKLKTASFEIRSRAVSLQRYTCSSDDILKHATKLLKAELPVSVRLIGLRMSQFVEE-IR 443
Query: 308 APSDPTQKTLTNFMTSGHASKKI--VGDQNSLGSDINDDCLIDDKETSVSLDVSETNNYE 365
SDP+Q T+T F+ +S++ + D +S D N +CL +D+ +VS ET++
Sbjct: 444 N-SDPSQGTITKFIVQKDSSRQAQDLDDNDSFDLDANKNCLSNDESGNVSFGSHETSSAH 502
Query: 366 FGDPVCDNSLPDLNDENCSFSNK-ISEVEKIHENEVSQLLEGNSLVLRQEEGSCCDGVEE 424
D V + + + S K I E + + E Q+LEG+SL+ + +E C
Sbjct: 503 LKDVV------EYEERSQIDSGKVIPNQECMKKEERLQILEGDSLLKKYKE--CKPDTSH 554
Query: 425 VDKDITPDNKVGTSSNQKDQFIWLDDYKCSLCGTEMPPSFIEERQEHSDFHLAERLQKEE 484
D + + + Q + W+D YKC LCG E+PPSF+EERQEHSDFHLA+RLQ EE
Sbjct: 555 SMNDNSNATEAVSVFPQTEPLYWIDGYKCVLCGIELPPSFVEERQEHSDFHLAQRLQNEE 614
Query: 485 SGSDLRILTHRERCVRTQRDHIASHRKRKKQKLFEKEGT-HIPIDMFFAKRNRN 537
+GS + R + ++ + K KKQK +K+ + HIPI FF K N+N
Sbjct: 615 TGSSSSTTPSKRRILGKEK----VNSKPKKQKPDQKDSSKHIPIHAFFTKSNQN 664
>ZFIN|ZDB-GENE-060526-137 [details] [associations]
symbol:polk "polymerase (DNA directed) kappa"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003684 "damaged DNA binding" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0006281
"DNA repair" evidence=IEA] HAMAP:MF_01113 InterPro:IPR001126
InterPro:IPR006642 InterPro:IPR017961 InterPro:IPR017963
InterPro:IPR022880 Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173
SMART:SM00734 ZFIN:ZDB-GENE-060526-137 GO:GO:0003684 GO:GO:0006281
GO:GO:0003887 eggNOG:COG0389 Gene3D:3.30.1490.100 SUPFAM:SSF100879
GeneTree:ENSGT00530000062942 HOVERGEN:HBG101212 OrthoDB:EOG4Z8XVV
EMBL:BX294131 IPI:IPI00806343 UniGene:Dr.86433 SMR:B0S5R3
Ensembl:ENSDART00000141039 OMA:FISTEDK Uniprot:B0S5R3
Length = 875
Score = 458 (166.3 bits), Expect = 9.4e-69, Sum P(3) = 9.4e-69
Identities = 105/256 (41%), Positives = 147/256 (57%)
Query: 77 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 136
G S E E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +P +R VM F+
Sbjct: 238 GTSAEEAVREMRFRIEQKTSLTASAGIAPNMMLAKVCSDKNKPNGQYRIPPERQVVMDFM 297
Query: 137 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 196
LP+RK+ G+GKVTE +L GI TC ++ Q+ +LL +FS ++ FL + LGLGST
Sbjct: 298 KDLPVRKVSGVGKVTEKMLA-ALGIVTCSQLGQQMALLSLLFSETSWHHFLHISLGLGST 356
Query: 197 NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEXXXXXXXXXXXXXASF 256
+ RKS+S+ERTF D Y E+ L+ D+Q+E F
Sbjct: 357 YMERDSERKSMSTERTFGEMSDAGEQYSLCKELCHDLAQDLQREGLKGKTVTLKLKNVKF 416
Query: 257 EVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQF--NEDKVRA 308
EV+T+A TLQ + + E+I A LLK E+ P+ LRL+G+RV+ F EDK
Sbjct: 417 EVKTKAFTLQYAVCTEEEIFAAAKDLLKVEIDSVSPQPLKLRLMGVRVSGFISTEDK--- 473
Query: 309 PSDPTQKTLTNFMTSG 324
P QK++ F+ G
Sbjct: 474 --KPLQKSIMGFLQKG 487
Score = 248 (92.4 bits), Expect = 9.4e-69, Sum P(3) = 9.4e-69
Identities = 47/69 (68%), Positives = 55/69 (79%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFGVRAAMPGFIA+KLCP+L+ VPT+F KY S R++F +YDPNFM SLDEAYL
Sbjct: 143 ARRFGVRAAMPGFIAKKLCPDLVIVPTNFDKYRAVSAQVREIFSEYDPNFMPMSLDEAYL 202
Query: 68 DITEVCRER 76
DITE +R
Sbjct: 203 DITEHLEQR 211
Score = 47 (21.6 bits), Expect = 9.4e-69, Sum P(3) = 9.4e-69
Identities = 15/36 (41%), Positives = 19/36 (52%)
Query: 467 ERQEHSDFHLAERLQKEESG--SDL--RILTHRERC 498
+ EH+D AER Q+E SG S L + L H C
Sbjct: 643 DSNEHTDLSAAER-QEELSGEPSSLESKTLVHYSSC 677
Score = 42 (19.8 bits), Expect = 3.1e-68, Sum P(3) = 3.1e-68
Identities = 17/50 (34%), Positives = 24/50 (48%)
Query: 369 PVCDNSLPDLNDENCSFSNKISEVEK---IHENEVSQLLEGNSLVLRQEE 415
PVC+ + D+N +F+ I E K + NE + L S RQEE
Sbjct: 615 PVCNKEMKDVN--LTAFNQHIDECLKGSAMDSNEHTDL----SAAERQEE 658
>UNIPROTKB|J9P5L3 [details] [associations]
symbol:POLK "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006281 "DNA repair" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0003684 "damaged DNA binding" evidence=IEA] HAMAP:MF_01113
InterPro:IPR001126 InterPro:IPR006642 InterPro:IPR017961
InterPro:IPR017963 InterPro:IPR022880 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 SMART:SM00734 GO:GO:0003684 GO:GO:0006281
GO:GO:0003887 Gene3D:3.30.1490.100 InterPro:IPR024728 Pfam:PF11798
SUPFAM:SSF100879 GeneTree:ENSGT00530000062942 KO:K03511 CTD:51426
EMBL:AAEX03002157 RefSeq:XP_536321.2 Ensembl:ENSCAFT00000046862
GeneID:479180 KEGG:cfa:479180 Uniprot:J9P5L3
Length = 861
Score = 476 (172.6 bits), Expect = 6.4e-68, Sum P(3) = 6.4e-68
Identities = 112/264 (42%), Positives = 159/264 (60%)
Query: 77 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 135
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ VLPN R AVM F
Sbjct: 287 GTSAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQVLPN-RQAVMDF 345
Query: 136 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 195
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ FL + LGLGS
Sbjct: 346 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHHFLHISLGLGS 404
Query: 196 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEXXXXXXXXXXXXXAS 255
T+ + RKS+S ERTFS Y E+ L+ D+QKE +
Sbjct: 405 THLARDGERKSMSVERTFSEISKAEEQYNLCQELCSELAQDLQKEGLKGRTVTIKLKNVN 464
Query: 256 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQF-NEDKVRA 308
FEV+TRA T+ +S++E+I A LL+ E+ P+ LRL+G+R++ F NE+ R
Sbjct: 465 FEVKTRASTVSSVVSTTEEIFAIAKELLRTEIDADFPHPLRLRLMGVRLSSFPNEEDKRH 524
Query: 309 PSDPTQKTLTNFMTSGHASKKIVG 332
Q+++ F+ +G+ S+ G
Sbjct: 525 Q----QRSIIGFLQAGNQSQSAPG 544
Score = 227 (85.0 bits), Expect = 6.4e-68, Sum P(3) = 6.4e-68
Identities = 43/69 (62%), Positives = 54/69 (78%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFGVRAAMPGFIA++LCP+LI VP +F KY S +++ YDPNF+A SLDEAYL
Sbjct: 143 ARRFGVRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSTEVKEILADYDPNFLAMSLDEAYL 202
Query: 68 DITEVCRER 76
+IT+ +ER
Sbjct: 203 NITKHLQER 211
Score = 55 (24.4 bits), Expect = 3.3e-16, Sum P(2) = 3.3e-16
Identities = 20/56 (35%), Positives = 28/56 (50%)
Query: 391 EVEKI--HENEVSQLLEGNSLVLRQEEGSCCDG-VEEVDKDITPDNKV--GTSSNQ 441
EV K+ HE +S LL +S Q +G+ G EE D T N + GTS+ +
Sbjct: 237 EVNKLREHERSISPLLFDDSPPDLQSQGNPLQGNSEEEDNPQTLQNSIVFGTSAEE 292
Score = 40 (19.1 bits), Expect = 6.4e-68, Sum P(3) = 6.4e-68
Identities = 28/141 (19%), Positives = 53/141 (37%)
Query: 347 IDDKETSV-SLDVSETNNYEFGDPVCD-N--SLPDLNDENCSFSNKISEVEKIHENEVSQ 402
++ KE S SE +YE + N LP+ D N + + + + H E
Sbjct: 669 VNKKENVYPSFSQSEKQDYETHQRNSEINFIELPETED-NPAKAESVDALSDKHSKEECA 727
Query: 403 LLEGNSLVLRQEEGSCCDGVEEVDKDITPDNKVGTSSNQKDQFIWLDDYKCSLCGTEMPP 462
L + + CC + ++ ++ + + S Q+ +L C +C E
Sbjct: 728 SLPSKPFNIEK----CC---QNSSSTVSLED-IASLSRQESSQPYLQALVCPVCNLEQKT 779
Query: 463 SFIEERQEHSDFHLAERLQKE 483
S + H D L + + +E
Sbjct: 780 SDLTLFNVHVDVCLNKGIIQE 800
>UNIPROTKB|E2RAS5 [details] [associations]
symbol:POLK "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006297 "nucleotide-excision repair, DNA gap
filling" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0003684 "damaged DNA binding" evidence=IEA] HAMAP:MF_01113
InterPro:IPR001126 InterPro:IPR006642 InterPro:IPR017961
InterPro:IPR017963 InterPro:IPR022880 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 SMART:SM00734 GO:GO:0005634 GO:GO:0003684
GO:GO:0003887 GO:GO:0006297 Gene3D:3.30.1490.100 InterPro:IPR024728
Pfam:PF11798 SUPFAM:SSF100879 GeneTree:ENSGT00530000062942
OMA:TCTELYQ EMBL:AAEX03002157 Ensembl:ENSCAFT00000014935
Uniprot:E2RAS5
Length = 871
Score = 474 (171.9 bits), Expect = 1.2e-67, Sum P(3) = 1.2e-67
Identities = 113/266 (42%), Positives = 160/266 (60%)
Query: 77 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 135
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ VLPN R AVM F
Sbjct: 295 GTSAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQVLPN-RQAVMDF 353
Query: 136 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 195
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ FL + LGLGS
Sbjct: 354 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHHFLHISLGLGS 412
Query: 196 TNTPQARF--RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEXXXXXXXXXXXXX 253
T+ +R RKS+S ERTFS Y E+ L+ D+QKE
Sbjct: 413 THLASSRDGERKSMSVERTFSEISKAEEQYNLCQELCSELAQDLQKEGLKGRTVTIKLKN 472
Query: 254 ASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQF-NEDKV 306
+FEV+TRA T+ +S++E+I A LL+ E+ P+ LRL+G+R++ F NE+
Sbjct: 473 VNFEVKTRASTVSSVVSTTEEIFAIAKELLRTEIDADFPHPLRLRLMGVRLSSFPNEEDK 532
Query: 307 RAPSDPTQKTLTNFMTSGHASKKIVG 332
R Q+++ F+ +G+ S+ G
Sbjct: 533 RHQ----QRSIIGFLQAGNQSQSAPG 554
Score = 227 (85.0 bits), Expect = 1.2e-67, Sum P(3) = 1.2e-67
Identities = 43/69 (62%), Positives = 54/69 (78%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFGVRAAMPGFIA++LCP+LI VP +F KY S +++ YDPNF+A SLDEAYL
Sbjct: 151 ARRFGVRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSTEVKEILADYDPNFLAMSLDEAYL 210
Query: 68 DITEVCRER 76
+IT+ +ER
Sbjct: 211 NITKHLQER 219
Score = 55 (24.4 bits), Expect = 3.4e-16, Sum P(2) = 3.4e-16
Identities = 20/56 (35%), Positives = 28/56 (50%)
Query: 391 EVEKI--HENEVSQLLEGNSLVLRQEEGSCCDG-VEEVDKDITPDNKV--GTSSNQ 441
EV K+ HE +S LL +S Q +G+ G EE D T N + GTS+ +
Sbjct: 245 EVNKLREHERSISPLLFDDSPPDLQSQGNPLQGNSEEEDNPQTLQNSIVFGTSAEE 300
Score = 40 (19.1 bits), Expect = 1.2e-67, Sum P(3) = 1.2e-67
Identities = 28/141 (19%), Positives = 53/141 (37%)
Query: 347 IDDKETSV-SLDVSETNNYEFGDPVCD-N--SLPDLNDENCSFSNKISEVEKIHENEVSQ 402
++ KE S SE +YE + N LP+ D N + + + + H E
Sbjct: 679 VNKKENVYPSFSQSEKQDYETHQRNSEINFIELPETED-NPAKAESVDALSDKHSKEECA 737
Query: 403 LLEGNSLVLRQEEGSCCDGVEEVDKDITPDNKVGTSSNQKDQFIWLDDYKCSLCGTEMPP 462
L + + CC + ++ ++ + + S Q+ +L C +C E
Sbjct: 738 SLPSKPFNIEK----CC---QNSSSTVSLED-IASLSRQESSQPYLQALVCPVCNLEQKT 789
Query: 463 SFIEERQEHSDFHLAERLQKE 483
S + H D L + + +E
Sbjct: 790 SDLTLFNVHVDVCLNKGIIQE 810
>UNIPROTKB|Q5Q9G8 [details] [associations]
symbol:POLK "Polymerase kappa isoform 1" species:9606 "Homo
sapiens" [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] HAMAP:MF_01113 InterPro:IPR001126 InterPro:IPR006642
InterPro:IPR017961 InterPro:IPR017963 InterPro:IPR022880
Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173 SMART:SM00734
GO:GO:0005634 GO:GO:0003684 GO:GO:0006281 EMBL:AC010245
EMBL:AC116341 GO:GO:0003887 Gene3D:3.30.1490.100 InterPro:IPR024728
Pfam:PF11798 SUPFAM:SSF100879 UniGene:Hs.732105 HGNC:HGNC:9183
HOVERGEN:HBG101212 EMBL:AC026424 EMBL:AY769929 IPI:IPI01013677
SMR:Q5Q9G8 STRING:Q5Q9G8 Ensembl:ENST00000380481 Uniprot:Q5Q9G8
Length = 780
Score = 475 (172.3 bits), Expect = 2.6e-66, Sum P(2) = 2.6e-66
Identities = 108/256 (42%), Positives = 156/256 (60%)
Query: 77 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 135
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 197 GTSAQEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 255
Query: 136 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 195
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 256 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGS 314
Query: 196 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEXXXXXXXXXXXXXAS 255
T+ + RKS+S ERTFS Y E+ L+ D+QKE +
Sbjct: 315 THLTRDGERKSMSVERTFSEINKAEEQYSLCQELCSELAQDLQKERLKGRTVTIKLKNVN 374
Query: 256 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVRAP 309
FEV+TRA T+ +S++E+I A LLK E+ P+ LRL+G+R++ F ++ R
Sbjct: 375 FEVKTRASTVSSVVSTAEEIFAIAKELLKTEIDADFPHPLRLRLMGVRISSFPNEEDRKH 434
Query: 310 SDPTQKTLTNFMTSGH 325
Q+++ F+ +G+
Sbjct: 435 Q---QRSIIGFLQAGN 447
Score = 229 (85.7 bits), Expect = 2.6e-66, Sum P(2) = 2.6e-66
Identities = 44/69 (63%), Positives = 53/69 (76%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFGVRAAMPGFIA++LCP+LI VP +F KY S +++ YDPNFMA SLDEAYL
Sbjct: 53 ARRFGVRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYL 112
Query: 68 DITEVCRER 76
+IT+ ER
Sbjct: 113 NITKHLEER 121
>UNIPROTKB|G3V8W7 [details] [associations]
symbol:Polk "Protein Polk" species:10116 "Rattus
norvegicus" [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=IEA]
HAMAP:MF_01113 InterPro:IPR001126 InterPro:IPR006642
InterPro:IPR017961 InterPro:IPR017963 InterPro:IPR022880
Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173 SMART:SM00734 RGD:620058
GO:GO:0003684 GO:GO:0006281 GO:GO:0003887 EMBL:CH473955
Gene3D:3.30.1490.100 SUPFAM:SSF100879 GeneTree:ENSGT00530000062942
OMA:TCTELYQ UniGene:Rn.92419 Ensembl:ENSRNOT00000033952
Uniprot:G3V8W7
Length = 851
Score = 471 (170.9 bits), Expect = 6.3e-66, Sum P(2) = 6.3e-66
Identities = 128/349 (36%), Positives = 183/349 (52%)
Query: 77 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 136
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ + R AVM FI
Sbjct: 286 GTSAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQIVPSRSAVMDFI 345
Query: 137 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 196
LPIRK+ GIGKVTE +L GI TC E+ Q+ +LL +FS S+ +FL V LGLGST
Sbjct: 346 KDLPIRKVSGIGKVTEKMLL-ALGIVTCTELYQQRALLSLLFSESSWHYFLHVALGLGST 404
Query: 197 NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEXXXXXXXXXXXXXASF 256
+ + RKS+S ERTFS Y E+ L+ D+QKE F
Sbjct: 405 DLARDGERKSMSVERTFSEINKTEEQYSLCQELCTELAHDLQKEGLKGRTVTIKLKNVDF 464
Query: 257 EVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVRAPS 310
EV+TRA T+ IS++EDI A LL+ E+ P+ LRL+G+R++ F+ D R
Sbjct: 465 EVKTRASTVPSAISTAEDIFAVAKELLRTEVTAGSPQPLRLRLMGVRMSTFSNDDDRKHQ 524
Query: 311 DPTQKTLTNFMTSGHASKKIVGDQNSLGSDINDDCLIDDKETSVSLDVSETNNYE-FGDP 369
Q+++ F+ +G+ G C D + + + ET+ + F D
Sbjct: 525 ---QRSIIGFLQAGNQGLSPTG------------CTADRTDKTELVKPLETSRKKSFFDK 569
Query: 370 VCDNSLPDLNDE-NCSFSNKISEVEKIHENEVSQLLEGNSLVLRQEEGS 417
+P+ D C KI+ + + +E SQ L+ S + E S
Sbjct: 570 KRSERIPNCQDPPRC----KIAGEQALQASEPSQALKKMSESFKTSENS 614
Score = 233 (87.1 bits), Expect = 6.3e-66, Sum P(2) = 6.3e-66
Identities = 44/69 (63%), Positives = 55/69 (79%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFGVRAAMPGFIA++LCP+LI VP +F KY S +++ +YDPNFMA SLDEAYL
Sbjct: 142 ARRFGVRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILAEYDPNFMAMSLDEAYL 201
Query: 68 DITEVCRER 76
+IT+ +ER
Sbjct: 202 NITQHLQER 210
Score = 40 (19.1 bits), Expect = 2.5e-15, Sum P(2) = 2.5e-15
Identities = 13/48 (27%), Positives = 19/48 (39%)
Query: 288 PVSLR-LIGLRVTQFNEDKVRAPSDPTQKTLTNFMTSGHASKKIVGDQ 334
PV R G+ + FNE P+ + + HAS +G Q
Sbjct: 623 PVCFREQEGISLEAFNEHVDACLDGPSTSENSEMPSYSHASSADIGQQ 670
>UNIPROTKB|Q9UBT6 [details] [associations]
symbol:POLK "DNA polymerase kappa" species:9606 "Homo
sapiens" [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006281 "DNA repair" evidence=TAS] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=IMP]
InterPro:IPR001126 InterPro:IPR006642 InterPro:IPR017961
InterPro:IPR017963 InterPro:IPR022880 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 SMART:SM00734 GO:GO:0005634 GO:GO:0046872
GO:GO:0003684 GO:GO:0006260 EMBL:CH471084 EMBL:AB036934
GO:GO:0003887 GO:GO:0006297 eggNOG:COG0389 Gene3D:3.30.1490.100
InterPro:IPR024728 Pfam:PF11798 SUPFAM:SSF100879 KO:K03511
EMBL:AB027564 EMBL:AF163570 EMBL:AF194973 EMBL:AF315602
EMBL:AF318313 EMBL:AK091659 EMBL:AK314610 EMBL:AY273797
EMBL:BC014955 EMBL:BC050718 EMBL:AB036935 IPI:IPI00033151
IPI:IPI00218100 IPI:IPI00552440 IPI:IPI00552703 RefSeq:NP_057302.1
UniGene:Hs.732105 PDB:1T94 PDB:2OH2 PDB:2W7O PDB:2W7P PDB:3IN5
PDB:3PZP PDBsum:1T94 PDBsum:2OH2 PDBsum:2W7O PDBsum:2W7P
PDBsum:3IN5 PDBsum:3PZP ProteinModelPortal:Q9UBT6 SMR:Q9UBT6
IntAct:Q9UBT6 STRING:Q9UBT6 PhosphoSite:Q9UBT6 DMDM:59798438
PaxDb:Q9UBT6 PRIDE:Q9UBT6 Ensembl:ENST00000241436
Ensembl:ENST00000352007 Ensembl:ENST00000508526
Ensembl:ENST00000510815 Ensembl:ENST00000515295 GeneID:51426
KEGG:hsa:51426 UCSC:uc003kdw.3 UCSC:uc003keb.3 UCSC:uc010izq.3
CTD:51426 GeneCards:GC05P074843 HGNC:HGNC:9183 MIM:605650
neXtProt:NX_Q9UBT6 PharmGKB:PA33503 HOVERGEN:HBG101212
InParanoid:Q9UBT6 OMA:TCTELYQ OrthoDB:EOG4Z8XVV BindingDB:Q9UBT6
ChEMBL:CHEMBL5365 EvolutionaryTrace:Q9UBT6 GenomeRNAi:51426
NextBio:54977 ArrayExpress:Q9UBT6 Bgee:Q9UBT6 Genevestigator:Q9UBT6
Uniprot:Q9UBT6
Length = 870
Score = 475 (172.3 bits), Expect = 7.2e-66, Sum P(2) = 7.2e-66
Identities = 108/256 (42%), Positives = 156/256 (60%)
Query: 77 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 135
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 287 GTSAQEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 345
Query: 136 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 195
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 346 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGS 404
Query: 196 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEXXXXXXXXXXXXXAS 255
T+ + RKS+S ERTFS Y E+ L+ D+QKE +
Sbjct: 405 THLTRDGERKSMSVERTFSEINKAEEQYSLCQELCSELAQDLQKERLKGRTVTIKLKNVN 464
Query: 256 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVRAP 309
FEV+TRA T+ +S++E+I A LLK E+ P+ LRL+G+R++ F ++ R
Sbjct: 465 FEVKTRASTVSSVVSTAEEIFAIAKELLKTEIDADFPHPLRLRLMGVRISSFPNEEDRKH 524
Query: 310 SDPTQKTLTNFMTSGH 325
Q+++ F+ +G+
Sbjct: 525 Q---QRSIIGFLQAGN 537
Score = 229 (85.7 bits), Expect = 7.2e-66, Sum P(2) = 7.2e-66
Identities = 44/69 (63%), Positives = 53/69 (76%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFGVRAAMPGFIA++LCP+LI VP +F KY S +++ YDPNFMA SLDEAYL
Sbjct: 143 ARRFGVRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYL 202
Query: 68 DITEVCRER 76
+IT+ ER
Sbjct: 203 NITKHLEER 211
>MGI|MGI:1349767 [details] [associations]
symbol:Polk "polymerase (DNA directed), kappa" species:10090
"Mus musculus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003684
"damaged DNA binding" evidence=IEA] [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006260
"DNA replication" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IMP] [GO:0006297 "nucleotide-excision repair, DNA gap
filling" evidence=ISO] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA] [GO:0008152 "metabolic process"
evidence=TAS] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0016779 "nucleotidyltransferase activity" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR001126
InterPro:IPR006642 InterPro:IPR017961 InterPro:IPR017963
InterPro:IPR022880 Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173
SMART:SM00734 MGI:MGI:1349767 GO:GO:0005634 GO:GO:0046872
GO:GO:0003684 GO:GO:0006260 GO:GO:0006281 GO:GO:0003887
GO:GO:0006297 eggNOG:COG0389 Gene3D:3.30.1490.100 SUPFAM:SSF100879
CleanEx:MM_POLK PDB:4FJO PDBsum:4FJO GeneTree:ENSGT00530000062942
HOGENOM:HOG000082711 KO:K03511 CTD:51426 HOVERGEN:HBG101212
OMA:TCTELYQ OrthoDB:EOG4Z8XVV EMBL:AB027563 EMBL:AF163571
EMBL:AB040765 EMBL:BC052820 IPI:IPI00131620 IPI:IPI00462547
RefSeq:NP_036178.1 UniGene:Mm.89926 PDB:2LSJ PDBsum:2LSJ
ProteinModelPortal:Q9QUG2 SMR:Q9QUG2 IntAct:Q9QUG2 STRING:Q9QUG2
PhosphoSite:Q9QUG2 PRIDE:Q9QUG2 Ensembl:ENSMUST00000022172
GeneID:27015 KEGG:mmu:27015 UCSC:uc007rne.1 InParanoid:Q9QUG2
NextBio:304949 Bgee:Q9QUG2 Genevestigator:Q9QUG2
GermOnline:ENSMUSG00000021668 Uniprot:Q9QUG2
Length = 852
Score = 464 (168.4 bits), Expect = 3.8e-65, Sum P(2) = 3.8e-65
Identities = 109/264 (41%), Positives = 158/264 (59%)
Query: 77 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 135
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LP+ R AVM F
Sbjct: 286 GTSAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPS-RSAVMDF 344
Query: 136 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 195
I LPIRK+ GIGKVTE +L GI TC E+ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 345 IKDLPIRKVSGIGKVTEKMLM-ALGIVTCTELYQQRALLSLLFSETSWHYFLHIALGLGS 403
Query: 196 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEXXXXXXXXXXXXXAS 255
T+ + RKS+S ERTFS Y E+ L+ D+QKE +
Sbjct: 404 TDLARDGERKSMSVERTFSEISKTEEQYSLCQELCAELAHDLQKEGLKGRTVTIKLKNVN 463
Query: 256 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVRAP 309
FEV+TRA T+ IS++E+I A LL+ E+ P+ LRL+G+R++ F+ + R
Sbjct: 464 FEVKTRASTVPAAISTAEEIFAIAKELLRTEVNVGSPHPLRLRLMGVRMSTFSSEDDRKH 523
Query: 310 SDPTQKTLTNFMTSGHASKKIVGD 333
Q+++ F+ +G+ + GD
Sbjct: 524 Q---QRSIIGFLQAGNQALSSTGD 544
Score = 233 (87.1 bits), Expect = 3.8e-65, Sum P(2) = 3.8e-65
Identities = 44/69 (63%), Positives = 55/69 (79%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFGVRAAMPGFIA++LCP+LI VP +F KY S +++ +YDPNFMA SLDEAYL
Sbjct: 142 ARRFGVRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILAEYDPNFMAMSLDEAYL 201
Query: 68 DITEVCRER 76
+IT+ +ER
Sbjct: 202 NITQHLQER 210
Score = 37 (18.1 bits), Expect = 5.1e-15, Sum P(2) = 5.1e-15
Identities = 13/55 (23%), Positives = 20/55 (36%)
Query: 288 PVSLR-LIGLRVTQFNEDKVRAPSDPTQKTLTNFMTSGHASKKIVGDQNSLGSDI 341
PV R G+ + FNE P+ + HAS +G + + I
Sbjct: 623 PVCFREQEGVSLEAFNEHVDECLDGPSTSENSKISCYSHASSADIGQKEDVHPSI 677
>UNIPROTKB|F1S2I2 [details] [associations]
symbol:POLK "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006297 "nucleotide-excision repair, DNA gap filling"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0003684
"damaged DNA binding" evidence=IEA] HAMAP:MF_01113
InterPro:IPR001126 InterPro:IPR006642 InterPro:IPR017961
InterPro:IPR017963 InterPro:IPR022880 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 SMART:SM00734 GO:GO:0005634 GO:GO:0003684
GO:GO:0003887 GO:GO:0006297 Gene3D:3.30.1490.100 InterPro:IPR024728
Pfam:PF11798 SUPFAM:SSF100879 GeneTree:ENSGT00530000062942
KO:K03511 CTD:51426 OMA:TCTELYQ EMBL:CU466449 RefSeq:XP_003123756.1
Ensembl:ENSSSCT00000015383 GeneID:100518650 KEGG:ssc:100518650
Uniprot:F1S2I2
Length = 878
Score = 468 (169.8 bits), Expect = 4.5e-65, Sum P(2) = 4.5e-65
Identities = 128/370 (34%), Positives = 193/370 (52%)
Query: 77 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 135
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R VM F
Sbjct: 294 GTSAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQVVMDF 352
Query: 136 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 195
I LPIRK+ GIGKVTE +L+ GI TC ++ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 353 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTDLYQQRALLSLLFSETSWHYFLHISLGLGS 411
Query: 196 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEXXXXXXXXXXXXXAS 255
T P+ RKS+S ERTFS Y E+ L+ D+QKE
Sbjct: 412 TCLPRDGERKSMSVERTFSEINKAEEQYSLCQELCSELAQDLQKEGLKGRTVTLKLKNVD 471
Query: 256 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQF-NEDKVRA 308
FEV+TRA T+ IS++E+I A LL+ E+ P+ LRL+G+R++ F NE++ +
Sbjct: 472 FEVKTRASTVLSVISTAEEIFAIAKELLRTEIDADFPHPLRLRLMGVRLSSFPNEEEKKH 531
Query: 309 PSDPTQKTLTNFMTSGHASKKIVG------DQNSLGSDI---NDDCLIDDKETSVSLDVS 359
Q+++ F+ G+ + G D++ + + D K + L
Sbjct: 532 Q----QRSIIGFLQPGNQTLSATGCMLEKTDKDQFPKPLEMSHKKSFFDKKRSERKLSHQ 587
Query: 360 ETNNYEFGDPVCDNSLPDLNDENCSFSNKISEVEKIHENEVSQLLEGNSLVLRQEEGSCC 419
+T E D SLP + +E + ++ Q+ V +E+GS
Sbjct: 588 DTFKSEIVDR---QSLPTSQSFQVLKKKRSENLETLENSDNGQVF--TCPVCFREQGSI- 641
Query: 420 DGVEEVDKDI 429
G+E +K +
Sbjct: 642 -GLEAFNKHV 650
Score = 229 (85.7 bits), Expect = 4.5e-65, Sum P(2) = 4.5e-65
Identities = 43/69 (62%), Positives = 53/69 (76%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR AMPGFIA++LCP+LI VP +F KY S +++F YDPNFMA SLDEAYL
Sbjct: 150 ARKFGVRGAMPGFIAKRLCPQLIIVPPNFDKYRAVSSEVKEIFADYDPNFMALSLDEAYL 209
Query: 68 DITEVCRER 76
+IT+ ER
Sbjct: 210 NITKHLEER 218
>UNIPROTKB|Q8AWW1 [details] [associations]
symbol:DINB1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003684 "damaged DNA binding" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006281 "DNA repair"
evidence=TAS] [GO:0019985 "translesion synthesis" evidence=TAS]
HAMAP:MF_01113 InterPro:IPR001126 InterPro:IPR006642
InterPro:IPR017961 InterPro:IPR017963 InterPro:IPR022880
Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173 SMART:SM00734
GO:GO:0005654 GO:GO:0003684 Reactome:REACT_115612 GO:GO:0003887
GO:GO:0006297 GO:GO:0019985 eggNOG:COG0389 Gene3D:3.30.1490.100
InterPro:IPR024728 Pfam:PF11798 SUPFAM:SSF100879 HSSP:P96022
GeneTree:ENSGT00530000062942 HOGENOM:HOG000082711 KO:K03511
CTD:51426 HOVERGEN:HBG101212 OMA:TCTELYQ EMBL:AADN02067159
EMBL:AADN02067160 EMBL:AADN02067161 EMBL:AY118271 IPI:IPI00586140
RefSeq:NP_989514.1 UniGene:Gga.42393 SMR:Q8AWW1 STRING:Q8AWW1
Ensembl:ENSGALT00000024123 GeneID:374003 KEGG:gga:374003
InParanoid:Q8AWW1 NextBio:20813531 Uniprot:Q8AWW1
Length = 867
Score = 440 (159.9 bits), Expect = 2.2e-64, Sum P(3) = 2.2e-64
Identities = 102/254 (40%), Positives = 151/254 (59%)
Query: 77 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 136
G S E +E+R + ++ LT SAG+APN +LAK+CSD NKPNGQ + +R AV+ FI
Sbjct: 280 GTSAEEAVKEIRFRIEQKTQLTASAGIAPNTMLAKMCSDRNKPNGQCRISPERQAVLDFI 339
Query: 137 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 196
LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ FL + LGLGST
Sbjct: 340 KDLPIRKVPGIGKVTEKMLK-ALGIVTCSELYQQRALLSLLFSEASWRSFLDISLGLGST 398
Query: 197 NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEXXXXXXXXXXXXXASF 256
+ + RKS+S+ERTFS Y E+ L+ D+QKE +F
Sbjct: 399 HLEKDGERKSMSTERTFSEISKAEDQYSLCQELCRELAQDLQKEGLKGKTVTLKLKNVNF 458
Query: 257 EVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVRAPS 310
EV+TRA T+ +S+ ++I A +LL E+ P+ +RL+G+RV+ F ++ +
Sbjct: 459 EVKTRASTVLSSVSTEDEIFAVAKMLLGTEIDSVAPHPLRIRLMGVRVSGFLSEEEKKYQ 518
Query: 311 DPTQKTLTNFMTSG 324
QK++ +F+ SG
Sbjct: 519 ---QKSIKSFLKSG 529
Score = 216 (81.1 bits), Expect = 2.2e-64, Sum P(3) = 2.2e-64
Identities = 41/69 (59%), Positives = 50/69 (72%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFGVRAAMPGFIA+KLCP L VP +F KY S +++ +YDP+FM LDEAYL
Sbjct: 144 ARRFGVRAAMPGFIAKKLCPHLTIVPLNFEKYRKVSKEVKEILAEYDPHFMPMGLDEAYL 203
Query: 68 DITEVCRER 76
++TE ER
Sbjct: 204 NVTEHLEER 212
Score = 56 (24.8 bits), Expect = 2.2e-64, Sum P(3) = 2.2e-64
Identities = 26/107 (24%), Positives = 45/107 (42%)
Query: 379 NDENCSFSNKISEVEKIHENE-VSQLLEGNSLVLRQEEGSC-CDGVEEVDKDITPDNKVG 436
N EN + +++ S + + ++ L N+L + G GV+ + NKV
Sbjct: 543 NQENLTKNSEASSRGSFFDKKRAARQLNSNNLFPNESVGKQHFHGVKSSANFVEEANKV- 601
Query: 437 TSSNQKDQFIWLDDYKCSLCGTEMPPSFIEERQEHSDFHLAERLQKE 483
+ QK + + C +C E S +EE H D LA L ++
Sbjct: 602 -TDLQKSNVCEI--FTCPVCFEEQSSSNLEEINRHVDECLAGSLVED 645
>UNIPROTKB|A6QNV6 [details] [associations]
symbol:POLK "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0006297 "nucleotide-excision repair, DNA gap filling"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0003684
"damaged DNA binding" evidence=IEA] HAMAP:MF_01113
InterPro:IPR001126 InterPro:IPR006642 InterPro:IPR017961
InterPro:IPR017963 InterPro:IPR022880 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 SMART:SM00734 GO:GO:0005634 GO:GO:0003684
GO:GO:0003887 GO:GO:0006297 eggNOG:COG0389 Gene3D:3.30.1490.100
InterPro:IPR024728 Pfam:PF11798 SUPFAM:SSF100879
GeneTree:ENSGT00530000062942 HOGENOM:HOG000082711 KO:K03511
CTD:51426 HOVERGEN:HBG101212 OMA:TCTELYQ OrthoDB:EOG4Z8XVV
EMBL:DAAA02027742 EMBL:DAAA02027743 EMBL:BC149024 IPI:IPI00867010
RefSeq:NP_001095728.1 UniGene:Bt.38144 SMR:A6QNV6 STRING:A6QNV6
Ensembl:ENSBTAT00000005265 GeneID:541218 KEGG:bta:541218
InParanoid:A6QNV6 NextBio:20879073 Uniprot:A6QNV6
Length = 877
Score = 459 (166.6 bits), Expect = 7.1e-64, Sum P(2) = 7.1e-64
Identities = 108/264 (40%), Positives = 158/264 (59%)
Query: 77 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 135
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 294 GTSAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 352
Query: 136 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 195
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ FL + LGLGS
Sbjct: 353 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHHFLHISLGLGS 411
Query: 196 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEXXXXXXXXXXXXXAS 255
T+ + RKS+S ERTFS Y E+ L+ D+QK+ +
Sbjct: 412 THLARDGERKSMSVERTFSEISKAEEQYSLCQELCSELAQDLQKKGLKGRTVTIKLKNVN 471
Query: 256 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQF-NEDKVRA 308
FEV+TRA T+ +S++E+I A LL+ E+ P+ LRL+G+R++ F NE++ +
Sbjct: 472 FEVKTRASTVSTVVSTAEEIFVIAKELLRTEIDADFPQPLRLRLMGVRLSGFPNEEEKKH 531
Query: 309 PSDPTQKTLTNFMTSGHASKKIVG 332
Q+++ F+ G+ + G
Sbjct: 532 Q----QRSIIGFLQPGNQALSATG 551
Score = 227 (85.0 bits), Expect = 7.1e-64, Sum P(2) = 7.1e-64
Identities = 44/69 (63%), Positives = 53/69 (76%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFGVRAAMPGFIA++LCP+LI VP +F KY S +++ YDPNFMA SLDEAYL
Sbjct: 150 ARRFGVRAAMPGFIAKRLCPQLIIVPPNFDKYQAVSREVKEILTDYDPNFMAMSLDEAYL 209
Query: 68 DITEVCRER 76
+IT+ ER
Sbjct: 210 NITKHLEER 218
>UNIPROTKB|F1NCT8 [details] [associations]
symbol:POLK "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003684 "damaged DNA binding" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0006281
"DNA repair" evidence=IEA] HAMAP:MF_01113 InterPro:IPR001126
InterPro:IPR006642 InterPro:IPR017961 InterPro:IPR017963
InterPro:IPR022880 Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173
SMART:SM00734 GO:GO:0003684 GO:GO:0006281 GO:GO:0003887
Gene3D:3.30.1490.100 InterPro:IPR024728 Pfam:PF11798
SUPFAM:SSF100879 GeneTree:ENSGT00530000062942 EMBL:AADN02067159
EMBL:AADN02067160 EMBL:AADN02067161 IPI:IPI00680917
Ensembl:ENSGALT00000032847 ArrayExpress:F1NCT8 Uniprot:F1NCT8
Length = 862
Score = 433 (157.5 bits), Expect = 1.3e-63, Sum P(3) = 1.3e-63
Identities = 102/255 (40%), Positives = 151/255 (59%)
Query: 77 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 136
G S E +E+R + ++ LT SAG+APN +LAK+CSD NKPNGQ + +R AV+ FI
Sbjct: 276 GTSAEEAVKEIRFRIEQKTQLTASAGIAPNTMLAKMCSDRNKPNGQCRISPERQAVLDFI 335
Query: 137 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 196
LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ FL + LGLGST
Sbjct: 336 KDLPIRKVPGIGKVTEKMLK-ALGIVTCSELYQQRALLSLLFSEASWRSFLDISLGLGST 394
Query: 197 NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEXXXXXXXXXXXXXASF 256
+ + RKS+S+ERTFS Y E+ L+ D+QKE +F
Sbjct: 395 HLEKDGERKSMSTERTFSEISKAEDQYSLCQELCRELAQDLQKEGLKGKTVTLKLKNVNF 454
Query: 257 EVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRL-IGLRVTQFNEDKVRAP 309
EV+TRA T+ +S+ ++I A +LL E+ P+ +RL +G+RV+ F ++ +
Sbjct: 455 EVKTRASTVLSSVSTEDEIFAVAKMLLGTEIDSVAPHPLRIRLMVGVRVSGFLSEEEKKY 514
Query: 310 SDPTQKTLTNFMTSG 324
QK++ +F+ SG
Sbjct: 515 Q---QKSIKSFLKSG 526
Score = 216 (81.1 bits), Expect = 1.3e-63, Sum P(3) = 1.3e-63
Identities = 41/69 (59%), Positives = 50/69 (72%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFGVRAAMPGFIA+KLCP L VP +F KY S +++ +YDP+FM LDEAYL
Sbjct: 143 ARRFGVRAAMPGFIAKKLCPHLTIVPLNFEKYRKVSKEVKEILAEYDPHFMPMGLDEAYL 202
Query: 68 DITEVCRER 76
++TE ER
Sbjct: 203 NVTEHLEER 211
Score = 56 (24.8 bits), Expect = 1.3e-63, Sum P(3) = 1.3e-63
Identities = 26/107 (24%), Positives = 45/107 (42%)
Query: 379 NDENCSFSNKISEVEKIHENE-VSQLLEGNSLVLRQEEGSC-CDGVEEVDKDITPDNKVG 436
N EN + +++ S + + ++ L N+L + G GV+ + NKV
Sbjct: 540 NQENLTKNSEASSRGSFFDKKRAARQLNSNNLFPNESVGKQHFHGVKSSANFVEEANKV- 598
Query: 437 TSSNQKDQFIWLDDYKCSLCGTEMPPSFIEERQEHSDFHLAERLQKE 483
+ QK + + C +C E S +EE H D LA L ++
Sbjct: 599 -TDLQKSNVCEI--FTCPVCFEEQSSSNLEEINRHVDECLAGSLVED 642
>UNIPROTKB|E9PST4 [details] [associations]
symbol:Polk "Protein Polk" species:10116 "Rattus
norvegicus" [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] HAMAP:MF_01113
InterPro:IPR001126 InterPro:IPR006642 InterPro:IPR017961
InterPro:IPR017963 InterPro:IPR022880 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 SMART:SM00734 RGD:620058 GO:GO:0005737
GO:GO:0046872 GO:GO:0003684 GO:GO:0006260 GO:GO:0006281
GO:GO:0003887 Gene3D:3.30.1490.100 SUPFAM:SSF100879 IPI:IPI00777177
Ensembl:ENSRNOT00000061462 ArrayExpress:E9PST4 Uniprot:E9PST4
Length = 771
Score = 633 (227.9 bits), Expect = 6.2e-62, P = 6.2e-62
Identities = 148/324 (45%), Positives = 198/324 (61%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFGVRAAMPGFIA++LCP+LI VP +F KY S +++ +YDPNFMA SLDEAYL
Sbjct: 142 ARRFGVRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILAEYDPNFMAMSLDEAYL 201
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
+IT+ +ER G E+ R + + G G+APN +LAKVCSD NKPNGQ+ +
Sbjct: 202 NITQHLQER--QGWP--EDKRR-YFIKMGNCRKIGIAPNTMLAKVCSDKNKPNGQYQIVP 256
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
R AVM FI LPIRK+ GIGKVTE +L GI TC E+ Q+ +LL +FS S+ +FL
Sbjct: 257 SRSAVMDFIKDLPIRKVSGIGKVTEKMLL-ALGIVTCTELYQQRALLSLLFSESSWHYFL 315
Query: 188 SVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEXXXXXXX 247
V LGLGST+ + RKS+S ERTFS Y E+ L+ D+QKE
Sbjct: 316 HVALGLGSTDLARDGERKSMSVERTFSEINKTEEQYSLCQELCTELAHDLQKEGLKGRTV 375
Query: 248 XXXXXXASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQF 301
FEV+TRA T+ IS++EDI A LL+ E+ P+ LRL+G+R++ F
Sbjct: 376 TIKLKNVDFEVKTRASTVPSAISTAEDIFAVAKELLRTEVTAGSPQPLRLRLMGVRMSTF 435
Query: 302 NEDKVRAPSDPTQKTLTNFMTSGH 325
+ D R Q+++ F+ +G+
Sbjct: 436 SNDDDRKHQ---QRSIIGFLQAGN 456
>UNIPROTKB|F1NCT7 [details] [associations]
symbol:POLK "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003684 "damaged DNA binding" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0006281
"DNA repair" evidence=IEA] HAMAP:MF_01113 InterPro:IPR001126
InterPro:IPR017961 InterPro:IPR017963 InterPro:IPR022880
Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173 GO:GO:0003684
GO:GO:0006281 GO:GO:0003887 Gene3D:3.30.1490.100 InterPro:IPR024728
Pfam:PF11798 SUPFAM:SSF100879 GeneTree:ENSGT00530000062942
EMBL:AADN02067159 EMBL:AADN02067160 EMBL:AADN02067161
IPI:IPI00680100 Ensembl:ENSGALT00000032848 ArrayExpress:F1NCT7
Uniprot:F1NCT7
Length = 543
Score = 416 (151.5 bits), Expect = 6.1e-60, Sum P(2) = 6.1e-60
Identities = 102/253 (40%), Positives = 144/253 (56%)
Query: 77 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 136
G S E +E+R + ++ LT SAG+APN +LAK+CSD NKPNGQ + +R AV+ FI
Sbjct: 281 GTSAEEAVKEIRFRIEQKTQLTASAGIAPNTMLAKMCSDRNKPNGQCRISPERQAVLDFI 340
Query: 137 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 196
LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ FL + LGLGST
Sbjct: 341 KDLPIRKVPGIGKVTEKMLK-ALGIVTCSELYQQRALLSLLFSEASWRSFLDISLGLGST 399
Query: 197 NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEXXXXXXXXXXXXXASF 256
+ + RKS+S+ERTFS Y E+ L+ D+QKE +F
Sbjct: 400 HLEKDGERKSMSTERTFSEISKAEDQYSLCQELCRELAQDLQKEGLKGKTVTLKLKNVNF 459
Query: 257 EVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQFNEDKVRAPSDPTQKT 316
EV+TRA T+ +S+ ++I A +LL E+ S+ LR+ D +R S +
Sbjct: 460 EVKTRASTVLSSVSTEDEIFAVAKMLLGTEID-SVAPHPLRIRLM--DSLRKTSQ-RKAA 515
Query: 317 LTNFMTSGHASKK 329
+ TS ASKK
Sbjct: 516 WSGLTTSQSASKK 528
Score = 216 (81.1 bits), Expect = 6.1e-60, Sum P(2) = 6.1e-60
Identities = 41/69 (59%), Positives = 50/69 (72%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFGVRAAMPGFIA+KLCP L VP +F KY S +++ +YDP+FM LDEAYL
Sbjct: 143 ARRFGVRAAMPGFIAKKLCPHLTIVPLNFEKYRKVSKEVKEILAEYDPHFMPMGLDEAYL 202
Query: 68 DITEVCRER 76
++TE ER
Sbjct: 203 NVTEHLEER 211
>UNIPROTKB|D6RAE5 [details] [associations]
symbol:POLK "DNA polymerase kappa" species:9606 "Homo
sapiens" [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] InterPro:IPR001126
InterPro:IPR017961 InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 GO:GO:0003684 GO:GO:0006281 EMBL:CH471084
EMBL:AC010245 EMBL:AC116341 GO:GO:0003887 Gene3D:3.30.1490.100
InterPro:IPR024728 Pfam:PF11798 SUPFAM:SSF100879
HOGENOM:HOG000082711 UniGene:Hs.732105 HGNC:HGNC:9183 EMBL:AC026424
IPI:IPI00966124 SMR:D6RAE5 Ensembl:ENST00000503479 Uniprot:D6RAE5
Length = 396
Score = 378 (138.1 bits), Expect = 2.6e-57, Sum P(2) = 2.6e-57
Identities = 82/165 (49%), Positives = 109/165 (66%)
Query: 77 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 135
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 221 GTSAQEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 279
Query: 136 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 195
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 280 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGS 338
Query: 196 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKE 240
T+ + RKS+S ERTFS Y E+ L+ D+QKE
Sbjct: 339 THLTRDGERKSMSVERTFSEINKAEEQYSLCQELCSELAQDLQKE 383
Score = 229 (85.7 bits), Expect = 2.6e-57, Sum P(2) = 2.6e-57
Identities = 44/69 (63%), Positives = 53/69 (76%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFGVRAAMPGFIA++LCP+LI VP +F KY S +++ YDPNFMA SLDEAYL
Sbjct: 77 ARRFGVRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYL 136
Query: 68 DITEVCRER 76
+IT+ ER
Sbjct: 137 NITKHLEER 145
>UNIPROTKB|Q5Q9G5 [details] [associations]
symbol:POLK "DNA polymerase kappa" species:9606 "Homo
sapiens" [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] InterPro:IPR001126
InterPro:IPR017961 InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 GO:GO:0003684 GO:GO:0006281 EMBL:AC010245
EMBL:AC116341 GO:GO:0003887 Gene3D:3.30.1490.100 InterPro:IPR024728
Pfam:PF11798 SUPFAM:SSF100879 HOGENOM:HOG000082711
UniGene:Hs.732105 HGNC:HGNC:9183 EMBL:AC026424 EMBL:AY769932
IPI:IPI00967663 SMR:Q5Q9G5 STRING:Q5Q9G5 Ensembl:ENST00000504026
UCSC:uc003kee.3 HOVERGEN:HBG056846 Uniprot:Q5Q9G5
Length = 461
Score = 378 (138.1 bits), Expect = 2.6e-57, Sum P(2) = 2.6e-57
Identities = 82/165 (49%), Positives = 109/165 (66%)
Query: 77 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 135
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 287 GTSAQEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 345
Query: 136 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 195
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 346 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGS 404
Query: 196 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKE 240
T+ + RKS+S ERTFS Y E+ L+ D+QKE
Sbjct: 405 THLTRDGERKSMSVERTFSEINKAEEQYSLCQELCSELAQDLQKE 449
Score = 229 (85.7 bits), Expect = 2.6e-57, Sum P(2) = 2.6e-57
Identities = 44/69 (63%), Positives = 53/69 (76%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFGVRAAMPGFIA++LCP+LI VP +F KY S +++ YDPNFMA SLDEAYL
Sbjct: 143 ARRFGVRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYL 202
Query: 68 DITEVCRER 76
+IT+ ER
Sbjct: 203 NITKHLEER 211
>UNIPROTKB|Q5Q9G7 [details] [associations]
symbol:POLK "DNA polymerase kappa" species:9606 "Homo
sapiens" [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] InterPro:IPR001126
InterPro:IPR017961 InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 GO:GO:0003684 GO:GO:0006281 EMBL:AC010245
EMBL:AC116341 GO:GO:0003887 Gene3D:3.30.1490.100 InterPro:IPR024728
Pfam:PF11798 SUPFAM:SSF100879 HOGENOM:HOG000082711
UniGene:Hs.732105 HGNC:HGNC:9183 EMBL:AC026424 HOVERGEN:HBG056846
EMBL:AY769930 IPI:IPI00965083 SMR:Q5Q9G7 STRING:Q5Q9G7
Ensembl:ENST00000509126 Uniprot:Q5Q9G7
Length = 489
Score = 378 (138.1 bits), Expect = 2.6e-57, Sum P(2) = 2.6e-57
Identities = 82/165 (49%), Positives = 109/165 (66%)
Query: 77 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 135
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 287 GTSAQEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 345
Query: 136 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 195
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 346 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGS 404
Query: 196 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKE 240
T+ + RKS+S ERTFS Y E+ L+ D+QKE
Sbjct: 405 THLTRDGERKSMSVERTFSEINKAEEQYSLCQELCSELAQDLQKE 449
Score = 229 (85.7 bits), Expect = 2.6e-57, Sum P(2) = 2.6e-57
Identities = 44/69 (63%), Positives = 53/69 (76%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFGVRAAMPGFIA++LCP+LI VP +F KY S +++ YDPNFMA SLDEAYL
Sbjct: 143 ARRFGVRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYL 202
Query: 68 DITEVCRER 76
+IT+ ER
Sbjct: 203 NITKHLEER 211
>WB|WBGene00017696 [details] [associations]
symbol:polk-1 species:6239 "Caenorhabditis elegans"
[GO:0003684 "damaged DNA binding" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0006281
"DNA repair" evidence=IEA] InterPro:IPR001126 InterPro:IPR017961
InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173
GO:GO:0005634 GO:GO:0046872 GO:GO:0003684 GO:GO:0006260
GO:GO:0006281 GO:GO:0003887 EMBL:FO080222 eggNOG:COG0389
Gene3D:3.30.1490.100 InterPro:IPR024728 Pfam:PF11798
SUPFAM:SSF100879 EMBL:FO080380 GeneTree:ENSGT00530000062942
PIR:S44637 RefSeq:NP_001122692.1 RefSeq:NP_001122693.1
UniGene:Cel.10581 ProteinModelPortal:P34409 SMR:P34409
STRING:P34409 EnsemblMetazoa:F22B7.6a GeneID:176209
KEGG:cel:CELE_F22B7.6 UCSC:F22B7.6b.2 CTD:176209 WormBase:F22B7.6a
WormBase:F22B7.6b HOGENOM:HOG000082711 InParanoid:P34409 KO:K03511
OMA:FMLAKIC NextBio:891590 Uniprot:P34409
Length = 596
Score = 422 (153.6 bits), Expect = 1.1e-56, Sum P(2) = 1.1e-56
Identities = 113/278 (40%), Positives = 156/278 (56%)
Query: 75 ERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMT 134
E G E E+R V + GLTCSAG+A N +LAK+CSD+NKPNGQ+VL ND+ A+M
Sbjct: 247 EFGTGREEAVREIRFRVEQLTGLTCSAGIASNFMLAKICSDLNKPNGQYVLENDKNAIME 306
Query: 135 FISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGL- 193
F+ LPIRK+GGIG+V E L+ I T +M K +L F+ + + FL LGL
Sbjct: 307 FLKDLPIRKVGGIGRVCEAQLK-AMDIQTVGDMNLKKNLYPLCFTPLSQESFLRTALGLP 365
Query: 194 GSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEXXXXXXXXXXXXX 253
G + R RKSIS ERTFS T D +L + EI ML D++K
Sbjct: 366 GRPSESDPR-RKSISVERTFSPTSDFNILLEEHQEICRMLEEDVRKSGIVGGKTVTLKLK 424
Query: 254 -ASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQ--FNEDKVRAPS 310
+SF+V TR++T + S EDI K + LL+ E +RL+G+R++Q F ED+ +
Sbjct: 425 LSSFDVLTRSLTPSDVVKSLEDIQKFSLELLEKEKGKEIRLLGVRLSQLIFEEDEKKR-- 482
Query: 311 DPTQKTLTNFMTSGHASKKIVGDQNSLGSD-INDDCLI 347
KT+T F KK+ QN GS+ ++DD +I
Sbjct: 483 ---SKTITEFWNE----KKLQ-IQNLQGSENVDDDDVI 512
Score = 179 (68.1 bits), Expect = 1.1e-56, Sum P(2) = 1.1e-56
Identities = 34/64 (53%), Positives = 45/64 (70%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFGVRA MPGFI+ KLCP L VP ++ KYT S ++F +YD + SLDEA++
Sbjct: 125 ARRFGVRAGMPGFISNKLCPSLTIVPGNYPKYTKVSRQFSQIFMEYDSDVGMMSLDEAFI 184
Query: 68 DITE 71
D+T+
Sbjct: 185 DLTD 188
Score = 108 (43.1 bits), Expect = 7.0e-17, Sum P(2) = 7.0e-17
Identities = 55/237 (23%), Positives = 101/237 (42%)
Query: 310 SDPTQKTLTNFMTSGHASK-KIVGDQNS-----LGSDINDDCLIDDKETSVSLDVSE--- 360
SDP +K+++ T S I+ +++ L D+ ++ K ++ L +S
Sbjct: 371 SDPRRKSISVERTFSPTSDFNILLEEHQEICRMLEEDVRKSGIVGGKTVTLKLKLSSFDV 430
Query: 361 -TNNYEFGDPVCDNSLPDLNDENCSFSNKISEVEKIHENEVSQL-LEGNSLVLRQEEGSC 418
T + D V SL D+ FS ++ E EK E+ L + + L+ ++E
Sbjct: 431 LTRSLTPSDVV--KSLEDIQ----KFSLELLEKEK--GKEIRLLGVRLSQLIFEEDEKKR 482
Query: 419 CDGVEEV--DKDITPDNKVGTSSNQKDQFIWLDDYKCSLCGTEMPPSFIEERQEHSDFHL 476
+ E +K + N G+ + D I +D C +CGT+ +E R + + H+
Sbjct: 483 SKTITEFWNEKKLQIQNLQGSENVDDDDVIMMDTRPCPICGTD-----VENRLDVMNCHV 537
Query: 477 AERLQKEESGSDLRILTHRERCVRTQRDHIASHRKRKKQKLFEKEGTHIPIDMFFAK 533
E + K ++ ++ TQ+ S +KRK Q+ K + ID F+ K
Sbjct: 538 DECILKVQNDDGPELICVSVENKSTQKPERPSTKKRKLQEKRPKAKKMVTIDSFWKK 594
>UNIPROTKB|D6R9M8 [details] [associations]
symbol:POLK "DNA polymerase kappa" species:9606 "Homo
sapiens" [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] InterPro:IPR001126
InterPro:IPR017963 Pfam:PF00817 PROSITE:PS50173 GO:GO:0003684
GO:GO:0006281 EMBL:AC010245 EMBL:AC116341 GO:GO:0003887
InterPro:IPR024728 Pfam:PF11798 HOGENOM:HOG000082711 HGNC:HGNC:9183
EMBL:AC026424 IPI:IPI00967979 ProteinModelPortal:D6R9M8 SMR:D6R9M8
Ensembl:ENST00000514141 UCSC:uc003kea.3 ArrayExpress:D6R9M8
Bgee:D6R9M8 Uniprot:D6R9M8
Length = 427
Score = 340 (124.7 bits), Expect = 9.5e-53, Sum P(2) = 9.5e-53
Identities = 72/136 (52%), Positives = 96/136 (70%)
Query: 77 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 135
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 287 GTSAQEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 345
Query: 136 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 195
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 346 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGS 404
Query: 196 TNTPQARFRKSISSER 211
T+ + RKS+S ER
Sbjct: 405 THLTRDGERKSMSVER 420
Score = 229 (85.7 bits), Expect = 9.5e-53, Sum P(2) = 9.5e-53
Identities = 44/69 (63%), Positives = 53/69 (76%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFGVRAAMPGFIA++LCP+LI VP +F KY S +++ YDPNFMA SLDEAYL
Sbjct: 143 ARRFGVRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYL 202
Query: 68 DITEVCRER 76
+IT+ ER
Sbjct: 203 NITKHLEER 211
>UNIPROTKB|F1MAB3 [details] [associations]
symbol:Polk "Protein Polk" species:10116 "Rattus
norvegicus" [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] InterPro:IPR001126
InterPro:IPR006642 InterPro:IPR017961 InterPro:IPR017963
Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173 SMART:SM00734 RGD:620058
GO:GO:0003684 GO:GO:0006281 GO:GO:0003887 Gene3D:3.30.1490.100
SUPFAM:SSF100879 IPI:IPI00372895 Ensembl:ENSRNOT00000040799
ArrayExpress:F1MAB3 Uniprot:F1MAB3
Length = 711
Score = 471 (170.9 bits), Expect = 1.2e-52, Sum P(2) = 1.2e-52
Identities = 128/349 (36%), Positives = 183/349 (52%)
Query: 77 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 136
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ + R AVM FI
Sbjct: 150 GTSAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQIVPSRSAVMDFI 209
Query: 137 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 196
LPIRK+ GIGKVTE +L GI TC E+ Q+ +LL +FS S+ +FL V LGLGST
Sbjct: 210 KDLPIRKVSGIGKVTEKMLL-ALGIVTCTELYQQRALLSLLFSESSWHYFLHVALGLGST 268
Query: 197 NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEXXXXXXXXXXXXXASF 256
+ + RKS+S ERTFS Y E+ L+ D+QKE F
Sbjct: 269 DLARDGERKSMSVERTFSEINKTEEQYSLCQELCTELAHDLQKEGLKGRTVTIKLKNVDF 328
Query: 257 EVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVRAPS 310
EV+TRA T+ IS++EDI A LL+ E+ P+ LRL+G+R++ F+ D R
Sbjct: 329 EVKTRASTVPSAISTAEDIFAVAKELLRTEVTAGSPQPLRLRLMGVRMSTFSNDDDRKHQ 388
Query: 311 DPTQKTLTNFMTSGHASKKIVGDQNSLGSDINDDCLIDDKETSVSLDVSETNNYE-FGDP 369
Q+++ F+ +G+ G C D + + + ET+ + F D
Sbjct: 389 ---QRSIIGFLQAGNQGLSPTG------------CTADRTDKTELVKPLETSRKKSFFDK 433
Query: 370 VCDNSLPDLNDE-NCSFSNKISEVEKIHENEVSQLLEGNSLVLRQEEGS 417
+P+ D C KI+ + + +E SQ L+ S + E S
Sbjct: 434 KRSERIPNCQDPPRC----KIAGEQALQASEPSQALKKMSESFKTSENS 478
Score = 98 (39.6 bits), Expect = 1.2e-52, Sum P(2) = 1.2e-52
Identities = 19/27 (70%), Positives = 23/27 (85%)
Query: 50 FCKYDPNFMAASLDEAYLDITEVCRER 76
F +YDPNFMA SLDEAYL+IT+ +ER
Sbjct: 48 FYEYDPNFMAMSLDEAYLNITQHLQER 74
>ASPGD|ASPL0000039840 [details] [associations]
symbol:AN3373 species:162425 "Emericella nidulans"
[GO:0000077 "DNA damage checkpoint" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0003684 "damaged DNA binding"
evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0000790
"nuclear chromatin" evidence=IEA] HAMAP:MF_01113 InterPro:IPR001126
InterPro:IPR017961 InterPro:IPR017963 InterPro:IPR022880
Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173 GO:GO:0003684
GO:GO:0006281 EMBL:BN001306 GO:GO:0003887 Gene3D:3.30.1490.100
SUPFAM:SSF100879 OMA:VHVDCDA EnsemblFungi:CADANIAT00009669
HOGENOM:HOG000082709 Uniprot:C8VHQ1
Length = 612
Score = 526 (190.2 bits), Expect = 1.3e-50, P = 1.3e-50
Identities = 113/304 (37%), Positives = 171/304 (56%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG R+ M F+A+KLCP+LI +P ++ KYT + R + +YDP F +AS+DEAYL
Sbjct: 154 ARKFGCRSGMASFVAKKLCPQLICLPQNYEKYTAKAQEIRAILAQYDPQFESASIDEAYL 213
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
+IT CRE+ + E +R + E+ ++ SAG+A N +AK+CS+ NKPNGQF +PN
Sbjct: 214 NITAYCREKQLDPDEAVSRMRAEILEKTKISVSAGIAANAKIAKICSNRNKPNGQFRVPN 273
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
++ A+M F+ LP+RKI G+G+V E L D GI TC ++ + + L +F F
Sbjct: 274 EKNAIMEFMRDLPMRKINGVGRVFEREL-DSIGIKTCGDIFPQRAYLAKLFGEKALHFLA 332
Query: 188 SVGLGLGSTNTPQARF--RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEXXXXX 245
LG+G T A RKS+ +ERTF + KL A+ L D+ +
Sbjct: 333 QCYLGVGRTKIQPAESYERKSVGTERTFHEISKREEFREKLWSCAQELEKDLSRTQFMGR 392
Query: 246 XXXXXXXXASFEVRTRAVTLQKYISSSEDILKHASVLLKA---ELP-VSLRLIGLRVTQF 301
A+FEV TR + +S+++D+ A +L+ E+P + LRL+G+R T
Sbjct: 393 TLVLKVKLATFEVLTRQYQPARAVSTAKDLFTSALPMLEKLEKEIPNMKLRLLGIRCTNL 452
Query: 302 NEDK 305
K
Sbjct: 453 VSTK 456
>POMBASE|SPCC553.07c [details] [associations]
symbol:kpa1 "DinB translesion DNA repair polymerase, pol
kappa" species:4896 "Schizosaccharomyces pombe" [GO:0000077 "DNA
damage checkpoint" evidence=IMP] [GO:0000790 "nuclear chromatin"
evidence=IDA] [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=ISM]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0006281 "DNA repair" evidence=ISM]
[GO:0006974 "response to DNA damage stimulus" evidence=IMP]
[GO:0019985 "translesion synthesis" evidence=TAS] [GO:0046872
"metal ion binding" evidence=IEA] InterPro:IPR001126
InterPro:IPR017961 InterPro:IPR017963 InterPro:IPR022880
Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173 PomBase:SPCC553.07c
GO:GO:0005829 GO:GO:0007126 GO:GO:0000077 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0046872 GO:GO:0003684 GO:GO:0006260
GO:GO:0000790 GO:GO:0003887 GO:GO:0019985 eggNOG:COG0389
Gene3D:3.30.1490.100 SUPFAM:SSF100879 HSSP:Q9UHC5 KO:K03511
PIR:T41397 RefSeq:NP_587767.2 ProteinModelPortal:O74944
STRING:O74944 EnsemblFungi:SPCC553.07c.1 GeneID:2539547
KEGG:spo:SPCC553.07c OMA:VHVDCDA OrthoDB:EOG441TMM NextBio:20800707
Uniprot:O74944
Length = 547
Score = 479 (173.7 bits), Expect = 1.3e-45, P = 1.3e-45
Identities = 119/365 (32%), Positives = 196/365 (53%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR+AMP FIARK+CP+L+ +P + ++Y S + V +YD N AS+DE Y+
Sbjct: 171 ARKFGVRSAMPEFIARKICPDLVVIPLNLSEYAIKSKEIQNVLAQYDSNLCPASIDEFYM 230
Query: 68 DITEVCRERGIS-GIE----IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQ 122
++T R + ++ +E + E++R V+EE G+T S G+A N+LLAK+ S+ KPN Q
Sbjct: 231 NLTSHLRLQELAFTVENITMVVEKIRKQVHEETGVTVSCGIAANKLLAKIASNKRKPNNQ 290
Query: 123 FVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHST 182
F +P D + + F++ LP+R++ GIG+V E L + I TC ++ + +L +F +
Sbjct: 291 FFIPFDEIGISKFMNDLPVREVSGIGRVLEQQLLGL-EIKTCGDIQRNLVILSYIFLPKS 349
Query: 183 ADFFLSVGLGLGSTNTPQ--ARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQK 239
L G G+T + RK+I SE TFS +++ KL + + +S ++QK
Sbjct: 350 FQNLLRCSYGFGTTILDEYGESKRKTIGSEATFSSNLSSPSIIEYKLRLLVQNVSENLQK 409
Query: 240 EXXXXXXXXXXXXXASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVT 299
+ F+V T+ ++ ++I S D+LK A LL+ P+++RL+G+R T
Sbjct: 410 RGLVTNSIAIKYKTSEFQVHTKQKSIGQFIHSESDLLKPALQLLRQSYPMTIRLLGVRAT 469
Query: 300 QFNEDKVRAPSDPTQKTLTNFMTSGHASKKIVGDQNSLGSDINDDCLIDDKETSVSL-DV 358
+ K R + + N + K I + L + D CL + ET SL +
Sbjct: 470 KL-VSKSRCLAMQLKFQSQNTVPCPVCQKNIENELGILNQHV-DLCL--NVETVKSLINT 525
Query: 359 SETNN 363
T N
Sbjct: 526 DHTAN 530
>UNIPROTKB|E9PST3 [details] [associations]
symbol:Polk "Protein Polk" species:10116 "Rattus
norvegicus" [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] InterPro:IPR001126
InterPro:IPR006642 InterPro:IPR017961 InterPro:IPR017963
Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173 SMART:SM00734 RGD:620058
GO:GO:0003684 GO:GO:0006281 GO:GO:0003887 Gene3D:3.30.1490.100
SUPFAM:SSF100879 IPI:IPI00777918 Ensembl:ENSRNOT00000061463
ArrayExpress:E9PST3 Uniprot:E9PST3
Length = 793
Score = 397 (144.8 bits), Expect = 4.8e-36, P = 4.8e-36
Identities = 137/429 (31%), Positives = 201/429 (46%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFGVRAAMPGFIA++LCP+LI VP +F KY S +++ +YDPNFMA SLDEAYL
Sbjct: 142 ARRFGVRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILAEYDPNFMAMSLDEAYL 201
Query: 68 DITEVCRER-GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDIN--KPNGQFV 124
+IT+ +ER G + ++ + G+ A N L ++ PN
Sbjct: 202 NITQHLQERQGWPEDKRRYFIKMGNCRKIGILTLAMTTGNFHLLRLAQPQGCIAPNTMLA 261
Query: 125 L-------PNDRMAVMTFISS-LPIRKIGGIGKVTE--HILRDVF---GINTCEEMLQKG 171
PN + ++ S+ + K I KV+ + + GI TC E+ Q+
Sbjct: 262 KVCSDKNKPNGQYQIVPSRSAVMDFIKDLPIRKVSGIGKVTEKMLLALGIVTCTELYQQR 321
Query: 172 SLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAE 231
+LL +FS S+ +FL V LGLGST+ + RKS+S ERTFS Y E+
Sbjct: 322 ALLSLLFSESSWHYFLHVALGLGSTDLARDGERKSMSVERTFSEINKTEEQYSLCQELCT 381
Query: 232 MLSADMQKEXXXXXXXXXXXXXASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSL 291
L+ D+QKE FEV+TRA T+ IS++EDI A LL+ E+
Sbjct: 382 ELAHDLQKEGLKGRTVTIKLKNVDFEVKTRASTVPSAISTAEDIFAVAKELLRTEVTAGS 441
Query: 292 RLIGLRVTQFNEDKVRAPSDPTQKTLTNFMTSGHASKKIVGDQNSLGSDINDD-CLIDDK 350
LR+ VR T +N H + I+G + ++ C D
Sbjct: 442 PQ-PLRLRLMG---VR------MSTFSNDDDRKHQQRSIIGFLQAGNQGLSPTGCTADRT 491
Query: 351 ETSVSLDVSETNNYE-FGDPVCDNSLPDLNDE-NCSFSNKISEVEKIHENEVSQLLEGNS 408
+ + + ET+ + F D +P+ D C KI+ + + +E SQ L+ S
Sbjct: 492 DKTELVKPLETSRKKSFFDKKRSERIPNCQDPPRC----KIAGEQALQASEPSQALKKMS 547
Query: 409 LVLRQEEGS 417
+ E S
Sbjct: 548 ESFKTSENS 556
>UNIPROTKB|Q47155 [details] [associations]
symbol:dinB species:83333 "Escherichia coli K-12"
[GO:0006974 "response to DNA damage stimulus" evidence=IEP]
[GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA;IDA] [GO:0000731 "DNA synthesis involved in DNA
repair" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IEA;IDA]
[GO:0003684 "damaged DNA binding" evidence=IEA] [GO:0019985
"translesion synthesis" evidence=IDA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0009432 "SOS response"
evidence=IEP;IDA] HAMAP:MF_01113 InterPro:IPR001126
InterPro:IPR017961 InterPro:IPR017963 InterPro:IPR022880
Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173 GO:GO:0005737 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0046872 GO:GO:0003684 GO:GO:0006260 EMBL:U70214 GO:GO:0000731
GO:GO:0009432 GO:GO:0003887 EMBL:D38582 GO:GO:0019985 PDB:1OK7
PDB:1UNN PDBsum:1OK7 PDBsum:1UNN KO:K02346 Gene3D:3.30.1490.100
InterPro:IPR024728 Pfam:PF11798 SUPFAM:SSF100879 EMBL:AF483080
EMBL:AF483081 EMBL:AF483082 EMBL:AF483083 EMBL:AF483084
EMBL:AF483085 EMBL:AF483086 EMBL:AF483087 EMBL:AF483088
EMBL:AF483089 EMBL:AF483090 EMBL:AF483091 EMBL:AF483092
EMBL:AF483093 EMBL:AF483094 EMBL:AF483095 EMBL:AF483096
EMBL:AF483097 EMBL:AF483098 EMBL:AF483099 EMBL:AF483100
EMBL:AF483101 EMBL:AF483102 EMBL:AF483103 EMBL:AF483104
EMBL:AF483105 PIR:H64747 RefSeq:NP_414766.1 RefSeq:YP_488526.1
ProteinModelPortal:Q47155 SMR:Q47155 IntAct:Q47155
EnsemblBacteria:EBESCT00000002588 EnsemblBacteria:EBESCT00000014477
GeneID:12932684 GeneID:944922 KEGG:ecj:Y75_p0222 KEGG:eco:b0231
PATRIC:32115577 EchoBASE:EB2935 EcoGene:EG13141 OMA:MNILNEY
ProtClustDB:PRK02406 BioCyc:EcoCyc:G6115-MONOMER
BioCyc:ECOL316407:JW0221-MONOMER BioCyc:MetaCyc:G6115-MONOMER
EvolutionaryTrace:Q47155 Genevestigator:Q47155 Uniprot:Q47155
Length = 351
Score = 360 (131.8 bits), Expect = 5.8e-33, P = 5.8e-33
Identities = 91/234 (38%), Positives = 132/234 (56%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR+AMP +A KLCP L +P F Y S+ R++F +Y SLDEAYL
Sbjct: 48 ARKFGVRSAMPTGMALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYL 107
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-P 126
D+T+ G S IA+E+R +++ E LT SAGVAP + LAK+ SD+NKPNGQFV+ P
Sbjct: 108 DVTDSVHCHG-SATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITP 166
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFF 186
+ V F+ +LP+ KI G+GKV+ L + G+ TC ++ QK L+ +
Sbjct: 167 AE---VPAFLQTLPLAKIPGVGKVSAAKL-EAMGLRTCGDV-QKCDLVMLLKRFGKFGRI 221
Query: 187 L-SVGLGLGSTNTPQARFRKSISSERTFSV-----TEDKALLYRKLAEIAEMLS 234
L G+ + R RKS+ ERT + +E +A++ R E+ L+
Sbjct: 222 LWERSQGIDERDVNSERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLA 275
>UNIPROTKB|Q8EHU9 [details] [associations]
symbol:dinB "DNA polymerase IV" species:211586 "Shewanella
oneidensis MR-1" [GO:0003674 "molecular_function" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] HAMAP:MF_01113
InterPro:IPR001126 InterPro:IPR017961 InterPro:IPR017963
InterPro:IPR022880 Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173
GO:GO:0005737 GO:GO:0046872 GO:GO:0003684 GO:GO:0006260
GO:GO:0006281 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0003887
eggNOG:COG0389 HOGENOM:HOG000082707 KO:K02346 Gene3D:3.30.1490.100
InterPro:IPR024728 Pfam:PF11798 SUPFAM:SSF100879 OMA:MNILNEY
ProtClustDB:PRK02406 RefSeq:NP_716739.1 HSSP:Q9UHC5
ProteinModelPortal:Q8EHU9 GeneID:1168948 KEGG:son:SO_1114
PATRIC:23521872 Uniprot:Q8EHU9
Length = 357
Score = 359 (131.4 bits), Expect = 7.6e-33, P = 7.6e-33
Identities = 89/209 (42%), Positives = 119/209 (56%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFGVR+AM A+KLCP+LI VP Y S R +F +Y SLDEAYL
Sbjct: 48 ARRFGVRSAMATAYAQKLCPDLILVPGRMQVYKDVSSQIRAIFSRYTELIEPLSLDEAYL 107
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+++ +G S IAE +R + E GLT SAGVAP + LAKV SD+NKPNGQ+V+P
Sbjct: 108 DVSDCKLHKG-SATLIAEAIRRDILAETGLTASAGVAPVKFLAKVASDLNKPNGQYVIPP 166
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADF 185
D+ V FI +L +R+I G+GKVT L + G+NTC ++ K L+ F A
Sbjct: 167 DK--VPEFIRTLSLRQIPGVGKVTAEKLSSL-GLNTCGDVQTYPKQELITR-FGKFGA-V 221
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFS 214
+ G+ +R RKS+ E T +
Sbjct: 222 LIERAQGIDDRGLSVSRERKSVGVETTLA 250
>TIGR_CMR|SO_1114 [details] [associations]
symbol:SO_1114 "DNA-damage-inducible protein P"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] HAMAP:MF_01113 InterPro:IPR001126 InterPro:IPR017961
InterPro:IPR017963 InterPro:IPR022880 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 GO:GO:0005737 GO:GO:0046872 GO:GO:0003684
GO:GO:0006260 GO:GO:0006281 EMBL:AE014299 GenomeReviews:AE014299_GR
GO:GO:0003887 eggNOG:COG0389 HOGENOM:HOG000082707 KO:K02346
Gene3D:3.30.1490.100 InterPro:IPR024728 Pfam:PF11798
SUPFAM:SSF100879 OMA:MNILNEY ProtClustDB:PRK02406
RefSeq:NP_716739.1 HSSP:Q9UHC5 ProteinModelPortal:Q8EHU9
GeneID:1168948 KEGG:son:SO_1114 PATRIC:23521872 Uniprot:Q8EHU9
Length = 357
Score = 359 (131.4 bits), Expect = 7.6e-33, P = 7.6e-33
Identities = 89/209 (42%), Positives = 119/209 (56%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFGVR+AM A+KLCP+LI VP Y S R +F +Y SLDEAYL
Sbjct: 48 ARRFGVRSAMATAYAQKLCPDLILVPGRMQVYKDVSSQIRAIFSRYTELIEPLSLDEAYL 107
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+++ +G S IAE +R + E GLT SAGVAP + LAKV SD+NKPNGQ+V+P
Sbjct: 108 DVSDCKLHKG-SATLIAEAIRRDILAETGLTASAGVAPVKFLAKVASDLNKPNGQYVIPP 166
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADF 185
D+ V FI +L +R+I G+GKVT L + G+NTC ++ K L+ F A
Sbjct: 167 DK--VPEFIRTLSLRQIPGVGKVTAEKLSSL-GLNTCGDVQTYPKQELITR-FGKFGA-V 221
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFS 214
+ G+ +R RKS+ E T +
Sbjct: 222 LIERAQGIDDRGLSVSRERKSVGVETTLA 250
>UNIPROTKB|Q71Y46 [details] [associations]
symbol:dinB "DNA polymerase IV" species:265669 "Listeria
monocytogenes serotype 4b str. F2365" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] HAMAP:MF_01113 InterPro:IPR001126 InterPro:IPR017961
InterPro:IPR017963 InterPro:IPR022880 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 GO:GO:0005737 GO:GO:0046872 GO:GO:0003684
GO:GO:0006260 GO:GO:0006281 EMBL:AE017262 GenomeReviews:AE017262_GR
GO:GO:0003887 eggNOG:COG0389 HOGENOM:HOG000082707 KO:K02346
Gene3D:3.30.1490.100 InterPro:IPR024728 Pfam:PF11798
SUPFAM:SSF100879 OMA:MNILNEY ProtClustDB:PRK02406
RefSeq:YP_014591.1 ProteinModelPortal:Q71Y46 STRING:Q71Y46
GeneID:2798339 KEGG:lmf:LMOf2365_1998 PATRIC:20325291
Uniprot:Q71Y46
Length = 356
Score = 355 (130.0 bits), Expect = 2.3e-32, P = 2.3e-32
Identities = 103/300 (34%), Positives = 154/300 (51%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGV +AMP A KLCP IF+ + Y S+ R++F +Y SLDEAYL
Sbjct: 51 ARKFGVHSAMPTRQAAKLCPNGIFIHGNMAHYVEVSNQIREIFSRYTDIIEPLSLDEAYL 110
Query: 68 DITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVL 125
D+TE ++G+ S +A E++ ++Y+E GLT SAGV+ N+ +AK+ SD KP G V
Sbjct: 111 DVTE--NKKGMKSATMVAREIQQTIYQELGLTASAGVSFNKFIAKIASDFKKPAGITVVT 168
Query: 126 PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGS---LLCAVFSHST 182
P + A F+ +P+ K G+GKVT L + GI T + L+K S L+ + H
Sbjct: 169 PEEAEA---FLEQIPVTKFYGVGKVTAEKLHRL-GIETGAD-LKKWSEWDLIRELHKHGY 223
Query: 183 ADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTE-DKALLYRKLAEIAEMLSADMQKEX 241
+ G N P R RKS+ E TF D +L + L + A+ + + K
Sbjct: 224 HLYRHVRGRSNNIVN-PH-RDRKSVGKETTFEFNVLDSRVLEQSLMQFAKKVEERLIKLQ 281
Query: 242 XXXXXXXXXXXXASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVT 299
+ F T+ +TL +Y + + I + A++LL+ S+RLIGL VT
Sbjct: 282 KHGKTVVLKLRYSDFTTITKRLTLNEYTNDTSQIYQAAALLLRESYTGQDSIRLIGLTVT 341
>UNIPROTKB|Q83EN5 [details] [associations]
symbol:dinP "DNA polymerase IV" species:227377 "Coxiella
burnetii RSA 493" [GO:0003674 "molecular_function" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] HAMAP:MF_01113
InterPro:IPR001126 InterPro:IPR017961 InterPro:IPR017963
InterPro:IPR022880 Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173
GO:GO:0005737 GO:GO:0000287 GO:GO:0003684 GO:GO:0006281
GO:GO:0006261 EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0003887
HOGENOM:HOG000082707 KO:K02346 Gene3D:3.30.1490.100
InterPro:IPR024728 Pfam:PF11798 SUPFAM:SSF100879 OMA:MNILNEY
RefSeq:NP_819324.2 GeneID:1208161 KEGG:cbu:CBU_0280 PATRIC:17929253
ProtClustDB:CLSK913950 BioCyc:CBUR227377:GJ7S-285-MONOMER
Uniprot:Q83EN5
Length = 372
Score = 348 (127.6 bits), Expect = 1.6e-31, P = 1.6e-31
Identities = 103/304 (33%), Positives = 158/304 (51%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR +GV++A+ A+KLCP LI +P + KY R +F +Y SLDEAYL
Sbjct: 71 ARGYGVQSAISSSYAKKLCPSLIILPVNMEKYRAIGHQIRGLFQEYTHLVEPLSLDEAYL 130
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLP 126
D+++ C+ S IA+E+R + + LT SAGVA N+LLAKV S NKPNG + +LP
Sbjct: 131 DVSD-CKIHQGSATRIAQEIREQIVKRHSLTASAGVASNKLLAKVASAWNKPNGIKVILP 189
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTAD 184
+ F+ +LPI KI G+GK+T ++ I+TC ++ L + +L + S
Sbjct: 190 SK---ADDFVKTLPIEKIHGVGKITAQKMK-AMNIHTCSDLQALSREALSKSFGSFGVTL 245
Query: 185 FFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEXXXX 244
+ L G+ S P R RKS+S E TFS +D A L E+A + + D+++
Sbjct: 246 YELCRGIDPRSVE-PN-RIRKSVSVEHTFS--QDIATLSECEIELANLFN-DLKQRLLKH 300
Query: 245 XXXXXXXXXASFEVRTRAVTLQKYISS--SEDILKHA--SVLLKAELPVSLRLIGLRVTQ 300
+ +T + I+ S D+ KH + + + PV RL+G+ V+
Sbjct: 301 TDRCIRKQFVKIKFNDFKITKAETITQTISLDLFKHLLYQIFERQQKPV--RLLGVGVS- 357
Query: 301 FNED 304
F+ED
Sbjct: 358 FSED 361
>TIGR_CMR|CBU_0280 [details] [associations]
symbol:CBU_0280 "DNA-damage-inducible protein P"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] HAMAP:MF_01113 InterPro:IPR001126 InterPro:IPR017961
InterPro:IPR017963 InterPro:IPR022880 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 GO:GO:0005737 GO:GO:0000287 GO:GO:0003684
GO:GO:0006281 GO:GO:0006261 EMBL:AE016828 GenomeReviews:AE016828_GR
GO:GO:0003887 HOGENOM:HOG000082707 KO:K02346 Gene3D:3.30.1490.100
InterPro:IPR024728 Pfam:PF11798 SUPFAM:SSF100879 OMA:MNILNEY
RefSeq:NP_819324.2 GeneID:1208161 KEGG:cbu:CBU_0280 PATRIC:17929253
ProtClustDB:CLSK913950 BioCyc:CBUR227377:GJ7S-285-MONOMER
Uniprot:Q83EN5
Length = 372
Score = 348 (127.6 bits), Expect = 1.6e-31, P = 1.6e-31
Identities = 103/304 (33%), Positives = 158/304 (51%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR +GV++A+ A+KLCP LI +P + KY R +F +Y SLDEAYL
Sbjct: 71 ARGYGVQSAISSSYAKKLCPSLIILPVNMEKYRAIGHQIRGLFQEYTHLVEPLSLDEAYL 130
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLP 126
D+++ C+ S IA+E+R + + LT SAGVA N+LLAKV S NKPNG + +LP
Sbjct: 131 DVSD-CKIHQGSATRIAQEIREQIVKRHSLTASAGVASNKLLAKVASAWNKPNGIKVILP 189
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTAD 184
+ F+ +LPI KI G+GK+T ++ I+TC ++ L + +L + S
Sbjct: 190 SK---ADDFVKTLPIEKIHGVGKITAQKMK-AMNIHTCSDLQALSREALSKSFGSFGVTL 245
Query: 185 FFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEXXXX 244
+ L G+ S P R RKS+S E TFS +D A L E+A + + D+++
Sbjct: 246 YELCRGIDPRSVE-PN-RIRKSVSVEHTFS--QDIATLSECEIELANLFN-DLKQRLLKH 300
Query: 245 XXXXXXXXXASFEVRTRAVTLQKYISS--SEDILKHA--SVLLKAELPVSLRLIGLRVTQ 300
+ +T + I+ S D+ KH + + + PV RL+G+ V+
Sbjct: 301 TDRCIRKQFVKIKFNDFKITKAETITQTISLDLFKHLLYQIFERQQKPV--RLLGVGVS- 357
Query: 301 FNED 304
F+ED
Sbjct: 358 FSED 361
>TIGR_CMR|CPS_1040 [details] [associations]
symbol:CPS_1040 "DNA polymerase IV" species:167879
"Colwellia psychrerythraea 34H" [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=ISS] [GO:0006260 "DNA replication"
evidence=ISS] HAMAP:MF_01113 InterPro:IPR001126 InterPro:IPR003583
InterPro:IPR017961 InterPro:IPR017963 InterPro:IPR022880
Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173 SMART:SM00278
GO:GO:0005737 GO:GO:0046872 GO:GO:0003684 GO:GO:0006260
GO:GO:0006281 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0003887
eggNOG:COG0389 HOGENOM:HOG000082707 KO:K02346 Gene3D:3.30.1490.100
InterPro:IPR024728 Pfam:PF11798 SUPFAM:SSF100879 RefSeq:YP_267789.1
HSSP:Q9UNA4 ProteinModelPortal:Q487H6 STRING:Q487H6 GeneID:3521759
KEGG:cps:CPS_1040 PATRIC:21465357 OMA:QSLGMRT
BioCyc:CPSY167879:GI48-1126-MONOMER Uniprot:Q487H6
Length = 352
Score = 323 (118.8 bits), Expect = 9.5e-31, Sum P(2) = 9.5e-31
Identities = 84/220 (38%), Positives = 120/220 (54%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR+AMP A++LCP L V Y S R++F +Y SLDEAYL
Sbjct: 50 ARQFGVRSAMPAIKAKQLCPHLKIVHGRMDVYKETSKNIREIFSRYTDLIEPLSLDEAYL 109
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T+ +G S IAE +R ++ E LT SAG+APN+ LAK+ SD NKPNGQ V+
Sbjct: 110 DVTDATMCQG-SATLIAERIRADIFNELNLTASAGIAPNKFLAKIASDENKPNGQCVITP 168
Query: 128 DRMAVMTFISSLPIRKIGGIG-KVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADF 185
D++A F+ L ++KI GIG K E + R G TC ++ Q L +
Sbjct: 169 DKVA--NFVEQLSLKKIPGIGPKTFEKLNRH--GYVTCADVRQSNIRALQNIVGKFANSL 224
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFS---VTEDKALL 222
+L G+ + + +R RKS++ E T + T+D+ L
Sbjct: 225 YLK-SHGVDNRDLEVSRQRKSLAIETTLAHDISTQDECKL 263
Score = 39 (18.8 bits), Expect = 9.5e-31, Sum P(2) = 9.5e-31
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 294 IGLRVTQFNEDKVRAPSDPTQKTL 317
+ L+ T FN+ V S+ Q+ L
Sbjct: 289 VKLKFTDFNQTTVETQSNECQQAL 312
>UNIPROTKB|Q74CQ6 [details] [associations]
symbol:dinB "DNA polymerase IV" species:243231 "Geobacter
sulfurreducens PCA" [GO:0003674 "molecular_function" evidence=ND]
HAMAP:MF_01113 InterPro:IPR001126 InterPro:IPR017961
InterPro:IPR017963 InterPro:IPR022880 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 GO:GO:0005737 GO:GO:0000287 GO:GO:0003684
GO:GO:0006281 GO:GO:0006261 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0003887 KO:K02346 Gene3D:3.30.1490.100 InterPro:IPR024728
Pfam:PF11798 SUPFAM:SSF100879 HOGENOM:HOG000082710
InterPro:IPR025188 Pfam:PF13438 HSSP:Q97W02 RefSeq:NP_952667.1
ProteinModelPortal:Q74CQ6 GeneID:2687433 KEGG:gsu:GSU1616
PATRIC:22026081 OMA:FETHTRA ProtClustDB:CLSK827609
BioCyc:GSUL243231:GH27-1576-MONOMER Uniprot:Q74CQ6
Length = 409
Score = 331 (121.6 bits), Expect = 1.4e-29, P = 1.4e-29
Identities = 93/316 (29%), Positives = 156/316 (49%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR GV M A++LCPELI V + +YT S L ++ ++ P S+DEA+L
Sbjct: 50 ARAHGVGTGMTTHEAKRLCPELILVIGNNREYTRISKLIFEMLGQFTPLVEVFSIDEAFL 109
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T R G + + IA E++ + + GLTCS G+APN+LLAK+ SD+ KP+G ++P
Sbjct: 110 DLTGSLRLFGRADV-IAREIKARIRDRFGLTCSIGIAPNKLLAKLASDMQKPDGLTIIPP 168
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
+ +A + + + PIR + GIG TE L+ GI+TC ++ S + +
Sbjct: 169 ENVA--SLMKTTPIRSLCGIGPSTEQRLK-YLGISTCNDLGHFSSKILTRHFGAMGARLK 225
Query: 188 SVGLGLGSTN---TPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEXXX 243
+G G+ + T KS+S T +K +++ L ++EM+ ++
Sbjct: 226 QMGQGIDDSPVIPTTTEEEVKSVSHSTTLDHDLTNKDDIHKYLLMLSEMVGRRARRYKTK 285
Query: 244 XXXXXXXXXXASFEVRTRAVTLQKYISSSEDILKHASVLLKA-ELPVSLRLIGLRVTQFN 302
A F +R TL ++ S DI + + LL +L +RL+G+ ++
Sbjct: 286 GKTVTLTIRYADFTTFSRQETLPSPLNRSGDIYRAVTALLDTLQLTQPIRLLGVAISNLV 345
Query: 303 EDKVRAPSDPTQKTLT 318
+ P P ++ LT
Sbjct: 346 HASEQLPLFPEERRLT 361
>TIGR_CMR|GSU_1616 [details] [associations]
symbol:GSU_1616 "ImpB/MucB/SamB family protein"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003674
"molecular_function" evidence=ND] [GO:0009650 "UV protection"
evidence=ISS] HAMAP:MF_01113 InterPro:IPR001126 InterPro:IPR017961
InterPro:IPR017963 InterPro:IPR022880 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 GO:GO:0005737 GO:GO:0000287 GO:GO:0003684
GO:GO:0006281 GO:GO:0006261 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0003887 KO:K02346 Gene3D:3.30.1490.100 InterPro:IPR024728
Pfam:PF11798 SUPFAM:SSF100879 HOGENOM:HOG000082710
InterPro:IPR025188 Pfam:PF13438 HSSP:Q97W02 RefSeq:NP_952667.1
ProteinModelPortal:Q74CQ6 GeneID:2687433 KEGG:gsu:GSU1616
PATRIC:22026081 OMA:FETHTRA ProtClustDB:CLSK827609
BioCyc:GSUL243231:GH27-1576-MONOMER Uniprot:Q74CQ6
Length = 409
Score = 331 (121.6 bits), Expect = 1.4e-29, P = 1.4e-29
Identities = 93/316 (29%), Positives = 156/316 (49%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR GV M A++LCPELI V + +YT S L ++ ++ P S+DEA+L
Sbjct: 50 ARAHGVGTGMTTHEAKRLCPELILVIGNNREYTRISKLIFEMLGQFTPLVEVFSIDEAFL 109
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T R G + + IA E++ + + GLTCS G+APN+LLAK+ SD+ KP+G ++P
Sbjct: 110 DLTGSLRLFGRADV-IAREIKARIRDRFGLTCSIGIAPNKLLAKLASDMQKPDGLTIIPP 168
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
+ +A + + + PIR + GIG TE L+ GI+TC ++ S + +
Sbjct: 169 ENVA--SLMKTTPIRSLCGIGPSTEQRLK-YLGISTCNDLGHFSSKILTRHFGAMGARLK 225
Query: 188 SVGLGLGSTN---TPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEXXX 243
+G G+ + T KS+S T +K +++ L ++EM+ ++
Sbjct: 226 QMGQGIDDSPVIPTTTEEEVKSVSHSTTLDHDLTNKDDIHKYLLMLSEMVGRRARRYKTK 285
Query: 244 XXXXXXXXXXASFEVRTRAVTLQKYISSSEDILKHASVLLKA-ELPVSLRLIGLRVTQFN 302
A F +R TL ++ S DI + + LL +L +RL+G+ ++
Sbjct: 286 GKTVTLTIRYADFTTFSRQETLPSPLNRSGDIYRAVTALLDTLQLTQPIRLLGVAISNLV 345
Query: 303 EDKVRAPSDPTQKTLT 318
+ P P ++ LT
Sbjct: 346 HASEQLPLFPEERRLT 361
>UNIPROTKB|Q3ZAI3 [details] [associations]
symbol:dinB "DNA polymerase IV" species:243164
"Dehalococcoides ethenogenes 195" [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=ISS] [GO:0006281 "DNA repair"
evidence=ISS] HAMAP:MF_01113 InterPro:IPR001126 InterPro:IPR017961
InterPro:IPR017963 InterPro:IPR022880 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 GO:GO:0005737 GO:GO:0046872 GO:GO:0003684
GO:GO:0006260 GO:GO:0006281 EMBL:CP000027 GenomeReviews:CP000027_GR
GO:GO:0003887 eggNOG:COG0389 HOGENOM:HOG000082707 KO:K02346
Gene3D:3.30.1490.100 InterPro:IPR024728 Pfam:PF11798
SUPFAM:SSF100879 HSSP:P96022 RefSeq:YP_180766.1
ProteinModelPortal:Q3ZAI3 STRING:Q3ZAI3 GeneID:3229123
KEGG:det:DET0011 PATRIC:21607125 OMA:PDGITIL ProtClustDB:CLSK836830
BioCyc:DETH243164:GJNF-11-MONOMER Uniprot:Q3ZAI3
Length = 390
Score = 325 (119.5 bits), Expect = 6.8e-29, P = 6.8e-29
Identities = 89/314 (28%), Positives = 151/314 (48%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG+ + MP A+ LCP+ +F+ + Y YS+ ++ + P LDEAYL
Sbjct: 50 ARKFGIHSGMPLLSAKHLCPQAVFIEGNHRLYREYSEKFMQILSDFSPFLEPMGLDEAYL 109
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
++T G G E+A ++R + E + S G+A ++++AK+ ++ KPNGQ +P
Sbjct: 110 EVTGFESLHGSIG-EMALKIRRRITAELSINASIGIANSKVVAKIATERAKPNGQCEVPA 168
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
A F++ L I + GIGK TE+ L+ + GINT + + + + A + L
Sbjct: 169 GEEAA--FLAPLDISIMPGIGKKTEYHLKSL-GINTLGRLAGIPATFLKIHLGTYAPYLL 225
Query: 188 SVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEXXXXXX 246
+ G+ + KSIS E TF T + L KL ++E ++A ++K
Sbjct: 226 NAAAGIDNRPVEMPAEAKSISRETTFETDTRNHTFLEAKLGYLSEKIAATLRKRGKQARV 285
Query: 247 XXXXXXXASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV---SLRLIGLRVTQFNE 303
A F TR L S +++I + A L+ L S+RL+G+ ++ F
Sbjct: 286 VQIKIRFADFTTLTRQKHLNHPCSGNQEIFQTALKLMNGILDSDRRSVRLLGVGISDFCG 345
Query: 304 DKVRAPSDPTQKTL 317
+ + DP + L
Sbjct: 346 PEKQLEIDPARARL 359
>TIGR_CMR|DET_0011 [details] [associations]
symbol:DET_0011 "DNA polymerase IV, putative"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006281
"DNA repair" evidence=ISS] HAMAP:MF_01113 InterPro:IPR001126
InterPro:IPR017961 InterPro:IPR017963 InterPro:IPR022880
Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173 GO:GO:0005737
GO:GO:0046872 GO:GO:0003684 GO:GO:0006260 GO:GO:0006281
EMBL:CP000027 GenomeReviews:CP000027_GR GO:GO:0003887
eggNOG:COG0389 HOGENOM:HOG000082707 KO:K02346 Gene3D:3.30.1490.100
InterPro:IPR024728 Pfam:PF11798 SUPFAM:SSF100879 HSSP:P96022
RefSeq:YP_180766.1 ProteinModelPortal:Q3ZAI3 STRING:Q3ZAI3
GeneID:3229123 KEGG:det:DET0011 PATRIC:21607125 OMA:PDGITIL
ProtClustDB:CLSK836830 BioCyc:DETH243164:GJNF-11-MONOMER
Uniprot:Q3ZAI3
Length = 390
Score = 325 (119.5 bits), Expect = 6.8e-29, P = 6.8e-29
Identities = 89/314 (28%), Positives = 151/314 (48%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG+ + MP A+ LCP+ +F+ + Y YS+ ++ + P LDEAYL
Sbjct: 50 ARKFGIHSGMPLLSAKHLCPQAVFIEGNHRLYREYSEKFMQILSDFSPFLEPMGLDEAYL 109
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
++T G G E+A ++R + E + S G+A ++++AK+ ++ KPNGQ +P
Sbjct: 110 EVTGFESLHGSIG-EMALKIRRRITAELSINASIGIANSKVVAKIATERAKPNGQCEVPA 168
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
A F++ L I + GIGK TE+ L+ + GINT + + + + A + L
Sbjct: 169 GEEAA--FLAPLDISIMPGIGKKTEYHLKSL-GINTLGRLAGIPATFLKIHLGTYAPYLL 225
Query: 188 SVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEXXXXXX 246
+ G+ + KSIS E TF T + L KL ++E ++A ++K
Sbjct: 226 NAAAGIDNRPVEMPAEAKSISRETTFETDTRNHTFLEAKLGYLSEKIAATLRKRGKQARV 285
Query: 247 XXXXXXXASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV---SLRLIGLRVTQFNE 303
A F TR L S +++I + A L+ L S+RL+G+ ++ F
Sbjct: 286 VQIKIRFADFTTLTRQKHLNHPCSGNQEIFQTALKLMNGILDSDRRSVRLLGVGISDFCG 345
Query: 304 DKVRAPSDPTQKTL 317
+ + DP + L
Sbjct: 346 PEKQLEIDPARARL 359
>DICTYBASE|DDB_G0287149 [details] [associations]
symbol:DDB_G0287149 "UMUC-like DNA-repair protein"
species:44689 "Dictyostelium discoideum" [GO:0006281 "DNA repair"
evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA] [GO:0003684 "damaged DNA binding" evidence=IEA]
InterPro:IPR001126 InterPro:IPR017961 InterPro:IPR017963
Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173 dictyBase:DDB_G0287149
GO:GO:0003684 GO:GO:0006281 GO:GO:0003887 eggNOG:COG0389
EMBL:AAFI02000098 KO:K03511 RefSeq:XP_637357.1
ProteinModelPortal:Q54KS3 EnsemblProtists:DDB0304434 GeneID:8625979
KEGG:ddi:DDB_G0287149 InParanoid:Q54KS3 OMA:YANVEEM Uniprot:Q54KS3
Length = 517
Score = 336 (123.3 bits), Expect = 2.3e-28, P = 2.3e-28
Identities = 63/164 (38%), Positives = 109/164 (66%)
Query: 7 SARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAY 66
+AR +GVR+ +PG +A KLCP LI +P+ +Y S + R + K+D N+++ SLDE
Sbjct: 122 AARAYGVRSGLPGLLAMKLCPHLIILPSRMDRYREVSLIIRNILYKFDKNYVSPSLDEGC 181
Query: 67 LDITEVCRER-GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL 125
+DITE ++ ++GI++A +L+ ++E+ LTCS G++ + LL+K+ S+INKPNG F L
Sbjct: 182 IDITEYLKDNENLTGIDVANQLQNDIFEKTTLTCSMGISCSPLLSKISSEINKPNGYFYL 241
Query: 126 PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQ 169
D+ FI ++ I+K+ GIGKV + +L+ + G+ ++++
Sbjct: 242 --DKQYSQEFIKTIQIKKLPGIGKVRQELLKTL-GLEFVSDIIE 282
>TIGR_CMR|CHY_1651 [details] [associations]
symbol:CHY_1651 "DNA polymerase IV - AMBIGUITY"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=ISS]
[GO:0006260 "DNA replication" evidence=ISS] [GO:0006281 "DNA
repair" evidence=ISS] HAMAP:MF_01113 InterPro:IPR001126
InterPro:IPR017961 InterPro:IPR017963 InterPro:IPR022880
Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173 GO:GO:0005737
GO:GO:0046872 EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003684
GO:GO:0006260 GO:GO:0006281 GO:GO:0003887 eggNOG:COG0389 KO:K02346
Gene3D:3.30.1490.100 InterPro:IPR024728 Pfam:PF11798
SUPFAM:SSF100879 HOGENOM:HOG000082710 RefSeq:YP_360472.1
HSSP:P96022 ProteinModelPortal:Q3ABL2 STRING:Q3ABL2 GeneID:3726655
KEGG:chy:CHY_1651 PATRIC:21276423 OMA:GNREIFQ
ProtClustDB:CLSK2464724 BioCyc:CHYD246194:GJCN-1650-MONOMER
Uniprot:Q3ABL2
Length = 391
Score = 315 (115.9 bits), Expect = 9.0e-28, P = 9.0e-28
Identities = 94/299 (31%), Positives = 149/299 (49%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR+AM + A +LCP IF+P + KY S+ ++F +Y P SLDEAYL
Sbjct: 50 ARKFGVRSAMSLWEAARLCPHGIFIPGNHKKYQEVSEKIFRIFREYTPLVEPVSLDEAYL 109
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T + G G EI ++++ ++EE LT S GVAPN+ LAK+ S++NKP+G +
Sbjct: 110 DVTGSQKLFG-PGAEIGKKIKKRIFEETELTASVGVAPNKFLAKLASEVNKPDGFCEVRE 168
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTAD-F 185
D V+ F++ LP+ + G+G+ + L D+ GI T ++ + L F + +
Sbjct: 169 DN--VLDFLAPLPVEMLWGVGEKMKERLNDM-GIKTVQDFWELPEFFLRKKFGVLGQNLY 225
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEXXXX 244
+LS G+ P+ R KS+ E T + D L KL + + +++E
Sbjct: 226 YLSRGIDFREV-IPE-RVPKSLGKEITLQKDSSDVDYLLGKLLGLTMAVGRGLRREGFYA 283
Query: 245 XXXXXXXXXASFEVRTRAVTLQKYISSSEDILKHASVLL----KAELPVSLRLIGLRVT 299
+SF TR + + + + A L ELPV RL+G+ T
Sbjct: 284 GGISVKIRLSSFITYTRHSRFFEPTWMDDVLYREAKRLFLENYHGELPV--RLVGVTAT 340
>UNIPROTKB|Q9KPS5 [details] [associations]
symbol:dinB "DNA polymerase IV" species:243277 "Vibrio
cholerae O1 biovar El Tor str. N16961" [GO:0008150
"biological_process" evidence=ND] HAMAP:MF_01113 InterPro:IPR001126
InterPro:IPR017961 InterPro:IPR017963 InterPro:IPR022880
Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173 GO:GO:0005737
GO:GO:0046872 GO:GO:0003684 GO:GO:0006260 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0006281 GO:GO:0003887
eggNOG:COG0389 KO:K02346 Gene3D:3.30.1490.100 InterPro:IPR024728
Pfam:PF11798 SUPFAM:SSF100879 OMA:QSLGMRT ProtClustDB:PRK02406
PIR:G82093 RefSeq:NP_231918.1 ProteinModelPortal:Q9KPS5
DNASU:2613209 GeneID:2613209 KEGG:vch:VC2287 PATRIC:20083613
Uniprot:Q9KPS5
Length = 360
Score = 307 (113.1 bits), Expect = 7.0e-27, P = 7.0e-27
Identities = 80/208 (38%), Positives = 112/208 (53%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR+AMP A KLCP+L VP + Y S + +F +Y SLDEAYL
Sbjct: 52 ARKFGVRSAMPTAQALKLCPQLHVVPGRMSVYKSVSQQIQTIFQRYTSLIEPLSLDEAYL 111
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D++E +G S IA+ +R +++E LT SAGVAP + LAKV SD+NKP+G +V+
Sbjct: 112 DVSESTAYQG-SATLIAQAIRRDIWQELNLTASAGVAPIKFLAKVASDLNKPDGLYVVTP 170
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFF 186
D++ M + SLP+ KI G+GKV L G+ ++ + L F A +
Sbjct: 171 DKVQEM--VDSLPLEKIPGVGKVALEKLHQA-GLYVGADVRRADYRKLLHQFGRLGASLW 227
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFS 214
G+ R RKS+ E TFS
Sbjct: 228 KK-SHGIDEREVVTERERKSVGVEYTFS 254
>TIGR_CMR|VC_2287 [details] [associations]
symbol:VC_2287 "DNA-damage-inducible protein P" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0008150 "biological_process"
evidence=ND] HAMAP:MF_01113 InterPro:IPR001126 InterPro:IPR017961
InterPro:IPR017963 InterPro:IPR022880 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 GO:GO:0005737 GO:GO:0046872 GO:GO:0003684
GO:GO:0006260 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0006281
GO:GO:0003887 eggNOG:COG0389 KO:K02346 Gene3D:3.30.1490.100
InterPro:IPR024728 Pfam:PF11798 SUPFAM:SSF100879 OMA:QSLGMRT
ProtClustDB:PRK02406 PIR:G82093 RefSeq:NP_231918.1
ProteinModelPortal:Q9KPS5 DNASU:2613209 GeneID:2613209
KEGG:vch:VC2287 PATRIC:20083613 Uniprot:Q9KPS5
Length = 360
Score = 307 (113.1 bits), Expect = 7.0e-27, P = 7.0e-27
Identities = 80/208 (38%), Positives = 112/208 (53%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR+AMP A KLCP+L VP + Y S + +F +Y SLDEAYL
Sbjct: 52 ARKFGVRSAMPTAQALKLCPQLHVVPGRMSVYKSVSQQIQTIFQRYTSLIEPLSLDEAYL 111
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D++E +G S IA+ +R +++E LT SAGVAP + LAKV SD+NKP+G +V+
Sbjct: 112 DVSESTAYQG-SATLIAQAIRRDIWQELNLTASAGVAPIKFLAKVASDLNKPDGLYVVTP 170
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFF 186
D++ M + SLP+ KI G+GKV L G+ ++ + L F A +
Sbjct: 171 DKVQEM--VDSLPLEKIPGVGKVALEKLHQA-GLYVGADVRRADYRKLLHQFGRLGASLW 227
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFS 214
G+ R RKS+ E TFS
Sbjct: 228 KK-SHGIDEREVVTERERKSVGVEYTFS 254
>UNIPROTKB|Q81M86 [details] [associations]
symbol:dinB "DNA polymerase IV" species:1392 "Bacillus
anthracis" [GO:0003674 "molecular_function" evidence=ND]
HAMAP:MF_01113 InterPro:IPR001126 InterPro:IPR017961
InterPro:IPR017963 InterPro:IPR022880 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 GO:GO:0005737 GO:GO:0046872 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003684
GO:GO:0006260 GO:GO:0006281 GO:GO:0003887 eggNOG:COG0389 KO:K02346
Gene3D:3.30.1490.100 InterPro:IPR024728 Pfam:PF11798
SUPFAM:SSF100879 RefSeq:NP_846596.1 RefSeq:YP_021011.1
RefSeq:YP_030301.1 ProteinModelPortal:Q81M86
EnsemblBacteria:EBBACT00000012953 EnsemblBacteria:EBBACT00000016454
EnsemblBacteria:EBBACT00000021276 GeneID:1087598 GeneID:2818956
GeneID:2848139 KEGG:ban:BA_4366 KEGG:bar:GBAA_4366 KEGG:bat:BAS4051
HOGENOM:HOG000082710 OMA:GDQIRRI ProtClustDB:PRK01810
BioCyc:BANT260799:GJAJ-4108-MONOMER
BioCyc:BANT261594:GJ7F-4248-MONOMER InterPro:IPR025188 Pfam:PF13438
Uniprot:Q81M86
Length = 412
Score = 297 (109.6 bits), Expect = 8.2e-25, P = 8.2e-25
Identities = 96/299 (32%), Positives = 144/299 (48%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR +G+R MP + A++LCP+LI +FT Y S ++ ++ S+DE YL
Sbjct: 57 AREYGIRTTMPLWEAKRLCPQLIVRRPNFTLYREASFQMFQILSRFTEKIQPVSIDEGYL 116
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
DIT+ C G S +EIA+ ++ ++ E L CS G+APN LAK SD+ KP G VL
Sbjct: 117 DITD-CYALG-SPLEIAKMIQQALLTELQLPCSIGIAPNLFLAKTASDMKKPLGITVLRK 174
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGS--LLCAVFSHSTADF 185
+ M I LP+ + GIG+ T L D+ I T E+ L KG+ ++ A D
Sbjct: 175 RDIPEM--IWPLPVGAMHGIGEKTAEKLNDIH-IQTIEQ-LAKGNEHIIRAKIGKHGVDL 230
Query: 186 FLSV-GLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEXX 242
G+ + Q KS+ + TFS + E+K LL L +++ +S +QK
Sbjct: 231 QRRAKGMDDREVDPSQMGQHKSVGNSMTFSKDMDEEKELL-DMLQRLSKSVSKRLQKRTL 289
Query: 243 XXXXXXXXXXXASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV-SLRLIGLRVTQ 300
TR+ L+ I DI + AS L K S+RL+G+ T+
Sbjct: 290 VSYNIQIMIKYHDRRTVTRSKQLKNAIWEERDIFQAASRLWKQHWDGDSVRLLGVTATE 348
>TIGR_CMR|BA_4366 [details] [associations]
symbol:BA_4366 "DNA-damage-inducible protein P, putative"
species:198094 "Bacillus anthracis str. Ames" [GO:0003674
"molecular_function" evidence=ND] [GO:0009650 "UV protection"
evidence=ISS] HAMAP:MF_01113 InterPro:IPR001126 InterPro:IPR017961
InterPro:IPR017963 InterPro:IPR022880 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 GO:GO:0005737 GO:GO:0046872 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003684
GO:GO:0006260 GO:GO:0006281 GO:GO:0003887 eggNOG:COG0389 KO:K02346
Gene3D:3.30.1490.100 InterPro:IPR024728 Pfam:PF11798
SUPFAM:SSF100879 RefSeq:NP_846596.1 RefSeq:YP_021011.1
RefSeq:YP_030301.1 ProteinModelPortal:Q81M86
EnsemblBacteria:EBBACT00000012953 EnsemblBacteria:EBBACT00000016454
EnsemblBacteria:EBBACT00000021276 GeneID:1087598 GeneID:2818956
GeneID:2848139 KEGG:ban:BA_4366 KEGG:bar:GBAA_4366 KEGG:bat:BAS4051
HOGENOM:HOG000082710 OMA:GDQIRRI ProtClustDB:PRK01810
BioCyc:BANT260799:GJAJ-4108-MONOMER
BioCyc:BANT261594:GJ7F-4248-MONOMER InterPro:IPR025188 Pfam:PF13438
Uniprot:Q81M86
Length = 412
Score = 297 (109.6 bits), Expect = 8.2e-25, P = 8.2e-25
Identities = 96/299 (32%), Positives = 144/299 (48%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR +G+R MP + A++LCP+LI +FT Y S ++ ++ S+DE YL
Sbjct: 57 AREYGIRTTMPLWEAKRLCPQLIVRRPNFTLYREASFQMFQILSRFTEKIQPVSIDEGYL 116
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
DIT+ C G S +EIA+ ++ ++ E L CS G+APN LAK SD+ KP G VL
Sbjct: 117 DITD-CYALG-SPLEIAKMIQQALLTELQLPCSIGIAPNLFLAKTASDMKKPLGITVLRK 174
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGS--LLCAVFSHSTADF 185
+ M I LP+ + GIG+ T L D+ I T E+ L KG+ ++ A D
Sbjct: 175 RDIPEM--IWPLPVGAMHGIGEKTAEKLNDIH-IQTIEQ-LAKGNEHIIRAKIGKHGVDL 230
Query: 186 FLSV-GLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEXX 242
G+ + Q KS+ + TFS + E+K LL L +++ +S +QK
Sbjct: 231 QRRAKGMDDREVDPSQMGQHKSVGNSMTFSKDMDEEKELL-DMLQRLSKSVSKRLQKRTL 289
Query: 243 XXXXXXXXXXXASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV-SLRLIGLRVTQ 300
TR+ L+ I DI + AS L K S+RL+G+ T+
Sbjct: 290 VSYNIQIMIKYHDRRTVTRSKQLKNAIWEERDIFQAASRLWKQHWDGDSVRLLGVTATE 348
>UNIPROTKB|Q74H50 [details] [associations]
symbol:dinB "DNA polymerase IV" species:243231 "Geobacter
sulfurreducens PCA" [GO:0003674 "molecular_function" evidence=ND]
HAMAP:MF_01113 InterPro:IPR001126 InterPro:IPR017961
InterPro:IPR017963 InterPro:IPR022880 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 GO:GO:0005737 GO:GO:0000287 GO:GO:0003684
GO:GO:0006281 GO:GO:0006261 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0003887 KO:K02346 Gene3D:3.30.1490.100 SUPFAM:SSF100879
HOGENOM:HOG000082710 HSSP:P96022 ProtClustDB:CLSK827609
RefSeq:NP_951105.1 ProteinModelPortal:Q74H50 GeneID:2688550
KEGG:gsu:GSU0043 PATRIC:22022827 OMA:ANRIILH
BioCyc:GSUL243231:GH27-86-MONOMER Uniprot:Q74H50
Length = 413
Score = 295 (108.9 bits), Expect = 2.0e-24, P = 2.0e-24
Identities = 95/310 (30%), Positives = 149/310 (48%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FGV+ M + A + CP LI V D KYT+ S ++F + P S+DEA+L
Sbjct: 53 ARAFGVKTGMNKWEALQACPHLILVVGDNRKYTHTSTQINRIFRDFTPEVETFSIDEAFL 112
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-P 126
D+T G S IA ++ + GLTCS G+APN+LLAK+ SD+ KP+G ++ P
Sbjct: 113 DVTGSLALFG-SAETIACRIKALIRHRFGLTCSIGIAPNKLLAKLASDMKKPDGLTIIRP 171
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHSTADF 185
+ +M I PI+ + GIG T L + GI TC E+ + +L F D
Sbjct: 172 EEVTRLMEII---PIQDLCGIGVKTRKQLNSL-GIQTCGELGRFPVEILRRTFG-VIGDR 226
Query: 186 FLSVGLGLG-STNTP--QARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKE 240
+G G+ S P +A KS+ T +T + +L + L +++EM+ ++
Sbjct: 227 LHLMGKGIDDSPVVPVEEAEEVKSVGHSMTLDRDLTARRDIL-KYLLQLSEMVGRRARRY 285
Query: 241 XXXXXXXXXXXXXASFEVRTRAVTLQKYISSSEDILKHASVLLKA-ELPVSLRLIGLRVT 299
A F + T + +S+E+I A +L EL +RL+G+R+T
Sbjct: 286 GVAGKTVHLTIRYADFTTVGKQQTRNQATNSTEEIYAEAVKILDTFELLQPVRLLGVRIT 345
Query: 300 QFNEDKVRAP 309
+ + P
Sbjct: 346 NLCYQREQLP 355
>TIGR_CMR|GSU_0043 [details] [associations]
symbol:GSU_0043 "ImpB/MucB/SamB family protein"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003674
"molecular_function" evidence=ND] [GO:0009650 "UV protection"
evidence=ISS] HAMAP:MF_01113 InterPro:IPR001126 InterPro:IPR017961
InterPro:IPR017963 InterPro:IPR022880 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 GO:GO:0005737 GO:GO:0000287 GO:GO:0003684
GO:GO:0006281 GO:GO:0006261 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0003887 KO:K02346 Gene3D:3.30.1490.100 SUPFAM:SSF100879
HOGENOM:HOG000082710 HSSP:P96022 ProtClustDB:CLSK827609
RefSeq:NP_951105.1 ProteinModelPortal:Q74H50 GeneID:2688550
KEGG:gsu:GSU0043 PATRIC:22022827 OMA:ANRIILH
BioCyc:GSUL243231:GH27-86-MONOMER Uniprot:Q74H50
Length = 413
Score = 295 (108.9 bits), Expect = 2.0e-24, P = 2.0e-24
Identities = 95/310 (30%), Positives = 149/310 (48%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FGV+ M + A + CP LI V D KYT+ S ++F + P S+DEA+L
Sbjct: 53 ARAFGVKTGMNKWEALQACPHLILVVGDNRKYTHTSTQINRIFRDFTPEVETFSIDEAFL 112
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-P 126
D+T G S IA ++ + GLTCS G+APN+LLAK+ SD+ KP+G ++ P
Sbjct: 113 DVTGSLALFG-SAETIACRIKALIRHRFGLTCSIGIAPNKLLAKLASDMKKPDGLTIIRP 171
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHSTADF 185
+ +M I PI+ + GIG T L + GI TC E+ + +L F D
Sbjct: 172 EEVTRLMEII---PIQDLCGIGVKTRKQLNSL-GIQTCGELGRFPVEILRRTFG-VIGDR 226
Query: 186 FLSVGLGLG-STNTP--QARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKE 240
+G G+ S P +A KS+ T +T + +L + L +++EM+ ++
Sbjct: 227 LHLMGKGIDDSPVVPVEEAEEVKSVGHSMTLDRDLTARRDIL-KYLLQLSEMVGRRARRY 285
Query: 241 XXXXXXXXXXXXXASFEVRTRAVTLQKYISSSEDILKHASVLLKA-ELPVSLRLIGLRVT 299
A F + T + +S+E+I A +L EL +RL+G+R+T
Sbjct: 286 GVAGKTVHLTIRYADFTTVGKQQTRNQATNSTEEIYAEAVKILDTFELLQPVRLLGVRIT 345
Query: 300 QFNEDKVRAP 309
+ + P
Sbjct: 346 NLCYQREQLP 355
>UNIPROTKB|Q0BZW2 [details] [associations]
symbol:dinB "DNA polymerase IV" species:228405 "Hyphomonas
neptunium ATCC 15444" [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
[GO:0006281 "DNA repair" evidence=ISS] HAMAP:MF_01113
InterPro:IPR001126 InterPro:IPR017961 InterPro:IPR017963
InterPro:IPR022880 Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173
GO:GO:0005737 GO:GO:0000287 GO:GO:0003684 GO:GO:0006260
GO:GO:0006281 GO:GO:0006261 EMBL:CP000158 GenomeReviews:CP000158_GR
GO:GO:0003887 eggNOG:COG0389 HOGENOM:HOG000082707 KO:K02346
Gene3D:3.30.1490.100 InterPro:IPR024728 Pfam:PF11798
SUPFAM:SSF100879 RefSeq:YP_760981.1 ProteinModelPortal:Q0BZW2
STRING:Q0BZW2 GeneID:4289730 KEGG:hne:HNE_2286 PATRIC:32217415
OMA:PALCRDC ProtClustDB:PRK02794
BioCyc:HNEP228405:GI69-2308-MONOMER Uniprot:Q0BZW2
Length = 424
Score = 290 (107.1 bits), Expect = 1.6e-23, P = 1.6e-23
Identities = 91/303 (30%), Positives = 142/303 (46%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR +GVR+AMP F A K CP+ + VP DF KY + R P S+DEAYL
Sbjct: 80 ARLYGVRSAMPMFKALKACPDAVVVPPDFRKYREAAKAIRAEMDHLTPLVQQVSIDEAYL 139
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLP 126
D++ R G L +V E G+T S G++ N+ LAK S+++KP G + P
Sbjct: 140 DLSGTDRLHGAPPAASLARLAKNVEREVGVTVSVGLSSNKFLAKTASELDKPRGFAIIAP 199
Query: 127 NDRMAVMTFISSLPIRKIGGIG-KVTEHILRDVFGINTCEEMLQKGSLLCAVFSHS-TAD 184
+ A F++ P+ + G+G K E + +D G T E+ +QK L + + T D
Sbjct: 200 EEAEA---FLAPHPVGFLHGVGPKFAESLNKD--GFYTIED-IQKADLKSLIRRYGETGD 253
Query: 185 FFLSVGLGLGSTNTPQARFRKSISSERTF-SVTEDKALLYRKLAEIAEMLSADMQK-EXX 242
+ G + RKS+SSE TF T D +L L ++ + +AD K E
Sbjct: 254 WLKRCAHGRDNRKVNPHEDRKSVSSETTFFEDTADIGILEDHLWRLS-VKTADRAKAEGV 312
Query: 243 XXXXXXXXXXXASFEVRTRAVTLQKYISSSEDILKHASVLLKAELP--VSLRLIGLRVTQ 300
+ F TR ++L + ++ + + + LL E V RLIG+ ++
Sbjct: 313 SGRVVTLKLKTSDFHPLTRRLSLTEPTQLAQVVFRASRPLLLKEATGRVKYRLIGVGLSD 372
Query: 301 FNE 303
++
Sbjct: 373 LSD 375
>FB|FBgn0035150 [details] [associations]
symbol:Rev1 "Rev1" species:7227 "Drosophila melanogaster"
[GO:0006281 "DNA repair" evidence=ISS] [GO:0017125 "deoxycytidyl
transferase activity" evidence=ISS;NAS] [GO:0019985 "translesion
synthesis" evidence=NAS] [GO:0000287 "magnesium ion binding"
evidence=IEA] [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0010569 "regulation of double-strand break repair via
homologous recombination" evidence=IMP] InterPro:IPR001126
InterPro:IPR012112 InterPro:IPR017961 InterPro:IPR017963
Pfam:PF00817 Pfam:PF11799 PIRSF:PIRSF036573 PROSITE:PS50173
InterPro:IPR001357 Pfam:PF00533 EMBL:AE014296 GO:GO:0000287
GO:GO:0003684 SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172
GO:GO:0010569 GO:GO:0003887 GO:GO:0019985 Gene3D:3.30.1490.100
SUPFAM:SSF100879 GO:GO:0017125 GeneTree:ENSGT00530000062942
KO:K03515 OMA:TIPYDFD CTD:51455 FlyBase:FBgn0035150 EMBL:AB049435
RefSeq:NP_612047.1 UniGene:Dm.2203 SMR:Q9W0P2 IntAct:Q9W0P2
STRING:Q9W0P2 EnsemblMetazoa:FBtr0072557 GeneID:38079
KEGG:dme:Dmel_CG12189 UCSC:CG12189-RA InParanoid:Q9W0P2
GenomeRNAi:38079 NextBio:806885 Uniprot:Q9W0P2
Length = 995
Score = 252 (93.8 bits), Expect = 5.2e-18, P = 5.2e-18
Identities = 62/210 (29%), Positives = 102/210 (48%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR G+R M A KLCPEL +P DF Y + +Y N A S DE ++
Sbjct: 366 AREKGIRNGMFVGQALKLCPELKTIPYDFEGYKEVAFTLYDTVAQYTLNIEAVSCDEMFV 425
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
++T++ E + + LR VY + G CSAGVA N+LLA++ + KPNGQF+L +
Sbjct: 426 ELTDLAHELNVDVMAFVSHLRQEVYSKTGCPCSAGVAGNKLLARMATKEAKPNGQFLLDS 485
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL--LCAVFSHSTADF 185
++ +++ + + + G+G H L+ G+N C ++ Q +L + V
Sbjct: 486 SN-DILAYMAPMSLDLLPGVGSSISHKLKQA-GLNNCGDV-QNTTLEKMEKVLGKKLGQN 542
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSV 215
G+ + RK++S+E F +
Sbjct: 543 LFQNCRGIDDRPLAYEQIRKTVSAEMNFGI 572
>ZFIN|ZDB-GENE-081105-180 [details] [associations]
symbol:si:dkey-57a22.7 "si:dkey-57a22.7"
species:7955 "Danio rerio" [GO:0016779 "nucleotidyltransferase
activity" evidence=IEA] [GO:0003684 "damaged DNA binding"
evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0000287
"magnesium ion binding" evidence=IEA] InterPro:IPR001126
InterPro:IPR012112 InterPro:IPR017961 InterPro:IPR017963
Pfam:PF00817 Pfam:PF11799 PIRSF:PIRSF036573 PROSITE:PS50173
InterPro:IPR001357 Pfam:PF00533 ZFIN:ZDB-GENE-081105-180
GO:GO:0000287 GO:GO:0003684 GO:GO:0006281 SMART:SM00292
SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0003887 eggNOG:COG0389
Gene3D:3.30.1490.100 InterPro:IPR024728 Pfam:PF11798
SUPFAM:SSF100879 GeneTree:ENSGT00530000062942 KO:K03515
HOGENOM:HOG000154094 HOVERGEN:HBG054140 EMBL:CR392332 EMBL:CR536604
IPI:IPI00862463 RefSeq:NP_001116772.1 UniGene:Dr.61598 SMR:B0UY97
Ensembl:ENSDART00000134915 GeneID:570043 KEGG:dre:570043
NextBio:20889959 Uniprot:B0UY97
Length = 1268
Score = 250 (93.1 bits), Expect = 1.2e-17, P = 1.2e-17
Identities = 66/209 (31%), Positives = 104/209 (49%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+ GVR M A++LCP+L VP DF Y + ++ Y N A S DEA +
Sbjct: 554 ARQAGVRNGMFFGRAKQLCPDLQSVPYDFHAYKEVALAMYEILASYTHNIEALSCDEALV 613
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D T + E G+S E+A +R + E+ G S G++ N LLA++ + KP GQ++L +
Sbjct: 614 DATALLVELGVSPDELARSIREDIKEKTGCCASVGMSSNILLARMATRKAKPKGQYLLRS 673
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFF 186
+ V FI P+ + G+G+ L + G++TC ++ Q S L F T
Sbjct: 674 EE--VDDFIRDQPVSSLPGVGRSMSSKLTSL-GVSTCGDLQQLSLSQLQREFGPRTGQTL 730
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFSV 215
GL + RKS+S+E +++
Sbjct: 731 FRFCRGLDDRPVRSEKERKSVSAEMNYNI 759
>UNIPROTKB|P63987 [details] [associations]
symbol:dinB2 "DNA polymerase IV 2" species:1773
"Mycobacterium tuberculosis" [GO:0005829 "cytosol" evidence=IDA]
[GO:0005886 "plasma membrane" evidence=IDA] HAMAP:MF_01113
InterPro:IPR001126 InterPro:IPR017961 InterPro:IPR017963
InterPro:IPR022880 Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173
GO:GO:0005829 GO:GO:0005886 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0046872 GO:GO:0003684 GO:GO:0006260
GO:GO:0006281 EMBL:BX842581 GO:GO:0003887 eggNOG:COG0389
HOGENOM:HOG000082707 KO:K02346 Gene3D:3.30.1490.100
SUPFAM:SSF100879 PIR:A70649 RefSeq:NP_217572.1 RefSeq:NP_337660.1
RefSeq:YP_006516517.1 ProteinModelPortal:P63987 SMR:P63987
EnsemblBacteria:EBMYCT00000003933 EnsemblBacteria:EBMYCT00000069414
GeneID:13317860 GeneID:887519 GeneID:923303 KEGG:mtc:MT3142
KEGG:mtu:Rv3056 KEGG:mtv:RVBD_3056 PATRIC:18128668
TubercuList:Rv3056 OMA:IIAHIDI ProtClustDB:PRK03352 Uniprot:P63987
Length = 346
Score = 235 (87.8 bits), Expect = 1.5e-17, P = 1.5e-17
Identities = 86/299 (28%), Positives = 141/299 (47%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR +GVRA MP A + CPE F+P++ Y S+ + DEAYL
Sbjct: 56 ARAYGVRAGMPLRTAARRCPEATFLPSNPAAYNAASEEVVALLRDLGYPVEVWGWDEAYL 115
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
+ + IE+AEE+R + + GL+CS G++ N+ AK+ + + KP G + L +
Sbjct: 116 AVAPGTPD---DPIEVAEEIRKVILSQTGLSCSIGISDNKQRAKIATGLAKPAGIYQLTD 172
Query: 128 DR-MAVMTFISSLPIRKIGGIG-KVTEHILRDVFGINTCEEMLQKGS-LLCAVFSHSTAD 184
MA+M + + G+G K T+ + + GINT ++ S LL + F TA
Sbjct: 173 ANWMAIM---GDRTVEALWGVGPKTTKRLAK--LGINTVYQLAHTDSGLLMSTFGPRTA- 226
Query: 185 FFLSVGLGLGSTN-TPQARFRKSISSERTF--SVTEDKALLYRKLAEIAEMLSADMQKEX 241
+L + G G T + QA +S S TF +T ++ + + E+A+ ++
Sbjct: 227 LWLLLAKGGGDTEVSAQAWVPRSRSHAVTFPRDLT-CRSEMESAVTELAQRTLNEVVASS 285
Query: 242 XXXXXXXXXXXXASFEVRTRAVTLQKYISSSEDILKHAS--VLLKAELPVSLRLIGLRV 298
A+F RT+ LQ S+ D++ A+ VL EL +RL+G+R+
Sbjct: 286 RTVTRVAVTVRTATFYTRTKIRKLQAP-STDPDVITAAARHVLDLFELDRPVRLLGVRL 343
>UNIPROTKB|E2RC81 [details] [associations]
symbol:POLH "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0010225 "response to UV-C" evidence=IEA]
[GO:0006301 "postreplication repair" evidence=IEA] [GO:0006290
"pyrimidine dimer repair" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0000731
"DNA synthesis involved in DNA repair" evidence=IEA] [GO:0003684
"damaged DNA binding" evidence=IEA] InterPro:IPR001126
InterPro:IPR017961 InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 GO:GO:0005634 GO:GO:0005737 GO:GO:0003684
GO:GO:0010225 GO:GO:0000731 GO:GO:0006301 GO:GO:0003887
GO:GO:0006290 Gene3D:3.30.1490.100 SUPFAM:SSF100879 KO:K03509
CTD:5429 OMA:SPPLTML InterPro:IPR017061 PIRSF:PIRSF036603
GeneTree:ENSGT00530000062942 EMBL:AAEX03008345 RefSeq:XP_532150.2
Ensembl:ENSCAFT00000003028 GeneID:474915 KEGG:cfa:474915
NextBio:20850851 Uniprot:E2RC81
Length = 712
Score = 151 (58.2 bits), Expect = 8.1e-17, Sum P(3) = 8.1e-17
Identities = 71/298 (23%), Positives = 131/298 (43%)
Query: 80 GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSL 139
G I EE+R ++ E G CSAG++ N++LAK+ +NKPN Q ++ + +V S +
Sbjct: 193 GAVIVEEMRAAIERETGFQCSAGISHNKVLAKLACGLNKPNRQTLVSHG--SVPQLFSQM 250
Query: 140 PIRKIGGIG-KVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHSTADFFLSVGLGLGSTN 197
PI KI +G K+ ++ ++ G+ E+ Q S L + F + ++ G+
Sbjct: 251 PISKIRSLGGKLGASVI-EILGVEYMGELTQFTESQLQSHFGEKNGSWLYAMCRGIEHDP 309
Query: 198 TPQARFRKSISSERTFS-----VTEDKALLYR-KLA-EIAEMLSADMQKEXXXXXXXXXX 250
+ K+I + F T ++ + +LA E+ E L+ D + +
Sbjct: 310 VKPRQLPKTIGCSKNFPGKTALTTREQVQWWLLQLAQELEERLTKD-RNDNDRVATQLAV 368
Query: 251 XXXASFEVRT----RAVTLQKYISS--SED---ILKHASVL-LKAELPVSLRLIGLRVTQ 300
+ R R L +Y + S D ++K+ + +K + L ++ L T+
Sbjct: 369 SIRVQGDKRLSSLRRCCALTRYDAHKMSHDAFAVIKNCNTSGIKTDWSPPLTMLFLCATK 428
Query: 301 FNEDKVRAPSDPTQKTLTNFMTSGHASKKIVGDQNSLGSDINDDCLID-DKETSVSLD 357
F+ APS T +T F++S +S V +S D + K+ + SL+
Sbjct: 429 FSAP---APSSCTD--ITTFLSSDPSSVTNVPVSSSEAKTQGCDLAVTATKKATTSLE 481
Score = 102 (41.0 bits), Expect = 8.1e-17, Sum P(3) = 8.1e-17
Identities = 33/99 (33%), Positives = 49/99 (49%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPT-------DFTKYTYYSDLTRKVFCKYDPNFMAA 60
AR FGV +M A+KLCP+L+ + TKY S + ++ A
Sbjct: 54 ARAFGVTRSMWADDAKKLCPDLLLAQVRESRGKANLTKYREASVEVMGILSRFAV-IERA 112
Query: 61 SLDEAYLDITEVCRER--GISGIEIAEELRTSVYEEAGL 97
S+DEAY+D+T +ER + G I+ +L + Y E GL
Sbjct: 113 SIDEAYIDLTSAVQERLQNLQGQPISADLLPTTYIE-GL 150
Score = 80 (33.2 bits), Expect = 8.1e-17, Sum P(3) = 8.1e-17
Identities = 20/69 (28%), Positives = 34/69 (49%)
Query: 449 DDYKCSLCGTEMPPSFIEERQEHSDFHLAERLQK---EESGSDLRILTHRERCVRTQRDH 505
D C CG+ +P + E EH+D+H A LQK + S ++++ + R +
Sbjct: 631 DQVPCEKCGSLVP---VWEMPEHTDYHFALELQKSFLQPHSSTMQVVPASSQSKRNPKSP 687
Query: 506 IASHRKRKK 514
AS+ KR +
Sbjct: 688 SASNSKRTR 696
>UNIPROTKB|D4A662 [details] [associations]
symbol:Polk "Protein Polk" species:10116 "Rattus
norvegicus" [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] InterPro:IPR001126
InterPro:IPR006642 InterPro:IPR017963 Pfam:PF00817 PROSITE:PS50173
SMART:SM00734 RGD:620058 GO:GO:0003684 GO:GO:0006281 GO:GO:0003887
IPI:IPI00951859 Ensembl:ENSRNOT00000065248 ArrayExpress:D4A662
Uniprot:D4A662
Length = 434
Score = 233 (87.1 bits), Expect = 1.1e-16, P = 1.1e-16
Identities = 44/69 (63%), Positives = 55/69 (79%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFGVRAAMPGFIA++LCP+LI VP +F KY S +++ +YDPNFMA SLDEAYL
Sbjct: 142 ARRFGVRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILAEYDPNFMAMSLDEAYL 201
Query: 68 DITEVCRER 76
+IT+ +ER
Sbjct: 202 NITQHLQER 210
>UNIPROTKB|Q9Y253 [details] [associations]
symbol:POLH "DNA polymerase eta" species:9606 "Homo
sapiens" [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0006290 "pyrimidine dimer repair"
evidence=IEA] [GO:0006301 "postreplication repair" evidence=IEA]
[GO:0000731 "DNA synthesis involved in DNA repair" evidence=IDA]
[GO:0010225 "response to UV-C" evidence=IDA] [GO:0006282
"regulation of DNA repair" evidence=TAS] [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006281 "DNA repair" evidence=TAS] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] Reactome:REACT_216
InterPro:IPR001126 InterPro:IPR017961 InterPro:IPR017963
Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173 GO:GO:0005737
GO:GO:0005654 GO:GO:0046872 GO:GO:0003684 GO:GO:0006260
GO:GO:0010225 GO:GO:0000731 GO:GO:0006301 GO:GO:0006282
GO:GO:0003887 GO:GO:0006290 eggNOG:COG0389 Gene3D:3.30.1490.100
SUPFAM:SSF100879 CleanEx:HS_POLH KO:K03509 EMBL:AL353602
EMBL:AB024313 EMBL:AF158185 EMBL:AB038008 EMBL:AY388614
EMBL:AL355802 EMBL:BC015742 IPI:IPI00008011 IPI:IPI00552037
RefSeq:NP_006493.1 UniGene:Hs.655467 PDB:2I5O PDB:2LSK PDB:3MR2
PDB:3MR3 PDB:3MR5 PDB:3MR6 PDB:3SI8 PDB:3TQ1 PDB:4DL2 PDB:4DL3
PDB:4DL4 PDB:4DL5 PDB:4DL6 PDB:4DL7 PDB:4ECQ PDB:4ECR PDB:4ECS
PDB:4ECT PDB:4ECU PDB:4ECV PDB:4ECW PDB:4ECX PDB:4ECY PDB:4ECZ
PDB:4ED0 PDB:4ED1 PDB:4ED2 PDB:4ED3 PDB:4ED6 PDB:4ED7 PDB:4ED8
PDB:4EEY PDBsum:2I5O PDBsum:2LSK PDBsum:3MR2 PDBsum:3MR3
PDBsum:3MR5 PDBsum:3MR6 PDBsum:3SI8 PDBsum:3TQ1 PDBsum:4DL2
PDBsum:4DL3 PDBsum:4DL4 PDBsum:4DL5 PDBsum:4DL6 PDBsum:4DL7
PDBsum:4ECQ PDBsum:4ECR PDBsum:4ECS PDBsum:4ECT PDBsum:4ECU
PDBsum:4ECV PDBsum:4ECW PDBsum:4ECX PDBsum:4ECY PDBsum:4ECZ
PDBsum:4ED0 PDBsum:4ED1 PDBsum:4ED2 PDBsum:4ED3 PDBsum:4ED6
PDBsum:4ED7 PDBsum:4ED8 PDBsum:4EEY ProteinModelPortal:Q9Y253
SMR:Q9Y253 IntAct:Q9Y253 MINT:MINT-2789553 STRING:Q9Y253
PhosphoSite:Q9Y253 DMDM:59798441 PRIDE:Q9Y253
Ensembl:ENST00000372226 Ensembl:ENST00000372236 GeneID:5429
KEGG:hsa:5429 UCSC:uc003ovq.4 CTD:5429 GeneCards:GC06P043543
HGNC:HGNC:9181 HPA:HPA006721 HPA:HPA026762 MIM:278750 MIM:603968
neXtProt:NX_Q9Y253 Orphanet:90342 PharmGKB:PA279
HOGENOM:HOG000115605 HOVERGEN:HBG053633 InParanoid:Q9Y253
OMA:SPPLTML OrthoDB:EOG4RBQJ8 PhylomeDB:Q9Y253 SABIO-RK:Q9Y253
BindingDB:Q9Y253 ChEMBL:CHEMBL5542 EvolutionaryTrace:Q9Y253
GenomeRNAi:5429 NextBio:21005 ArrayExpress:Q9Y253 Bgee:Q9Y253
Genevestigator:Q9Y253 GermOnline:ENSG00000170734 InterPro:IPR017061
PIRSF:PIRSF036603 Uniprot:Q9Y253
Length = 713
Score = 159 (61.0 bits), Expect = 2.2e-16, Sum P(3) = 2.2e-16
Identities = 67/267 (25%), Positives = 122/267 (45%)
Query: 80 GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSL 139
G I EE+R ++ E G CSAG++ N++LAK+ +NKPN Q ++ + +V S +
Sbjct: 193 GAVIVEEMRAAIERETGFQCSAGISHNKVLAKLACGLNKPNRQTLVSHG--SVPQLFSQM 250
Query: 140 PIRKIGGIG-KVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHSTADFFLSVGLGLGSTN 197
PIRKI +G K+ ++ ++ GI E+ Q S L + F + ++ G+
Sbjct: 251 PIRKIRSLGGKLGASVI-EILGIEYMGELTQFTESQLQSHFGEKNGSWLYAMCRGIEHDP 309
Query: 198 TPQARFRKSISSERTFS-----VTEDKALLYR-KLA-EIAEMLSADMQKEXXXXXXXXXX 250
+ K+I + F T ++ + +LA E+ E L+ D + +
Sbjct: 310 VKPRQLPKTIGCSKNFPGKTALATREQVQWWLLQLAQELEERLTKD-RNDNDRVATQLVV 368
Query: 251 XXXASFEVRT----RAVTLQKYISS--SED---ILKHASVL-LKAELPVSLRLIGLRVTQ 300
+ R R L +Y + S D ++K+ + ++ E L ++ L T+
Sbjct: 369 SIRVQGDKRLSSLRRCCALTRYDAHKMSHDAFTVIKNCNTSGIQTEWSPPLTMLFLCATK 428
Query: 301 FNEDKVRAPSDPTQKTLTNFMTSGHAS 327
F+ APS T +T+F++S +S
Sbjct: 429 FSAS---APSSSTD--ITSFLSSDPSS 450
Score = 105 (42.0 bits), Expect = 2.2e-16, Sum P(3) = 2.2e-16
Identities = 34/99 (34%), Positives = 50/99 (50%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPT-------DFTKYTYYSDLTRKVFCKYDPNFMAA 60
AR FGV +M A+KLCP+L+ + TKY S ++ ++ A
Sbjct: 54 ARAFGVTRSMWADDAKKLCPDLLLAQVRESRGKANLTKYREASVEVMEIMSRFAV-IERA 112
Query: 61 SLDEAYLDITEVCRER--GISGIEIAEELRTSVYEEAGL 97
S+DEAY+D+T +ER + G I+ +L S Y E GL
Sbjct: 113 SIDEAYVDLTSAVQERLQKLQGQPISADLLPSTYIE-GL 150
Score = 64 (27.6 bits), Expect = 2.2e-16, Sum P(3) = 2.2e-16
Identities = 27/100 (27%), Positives = 41/100 (41%)
Query: 383 CSFSNKISEVEKIHENEVSQLLEGNSLVLRQEEGSCCDGVEEVDKDITPDNKVGTSSNQK 442
C +K+ E K E+ L NS + S V EV + TP+ + + +Q
Sbjct: 578 CEGVSKLEESSKATPAEMD--LAHNSQSMHASSAS--KSVLEVTQKATPNPSLLAAEDQ- 632
Query: 443 DQFIWLDDYKCSLCGTEMPPSFIEERQEHSDFHLAERLQK 482
C CG+ +P + + EH D+H A LQK
Sbjct: 633 --------VPCEKCGSLVP---VWDMPEHMDYHFALELQK 661
>TIGR_CMR|SPO_3280 [details] [associations]
symbol:SPO_3280 "DNA polymerase IV, putative"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] [GO:0006281 "DNA repair" evidence=ISS]
HAMAP:MF_01113 InterPro:IPR001126 InterPro:IPR017961
InterPro:IPR017963 InterPro:IPR022880 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 GO:GO:0005737 GO:GO:0000287 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003684 GO:GO:0006281 GO:GO:0006261
GO:GO:0003887 HOGENOM:HOG000082707 KO:K02346 Gene3D:3.30.1490.100
SUPFAM:SSF100879 OMA:PALCRDC ProtClustDB:PRK02794
RefSeq:YP_168477.1 ProteinModelPortal:Q5LND1 GeneID:3193147
KEGG:sil:SPO3280 PATRIC:23380003 Uniprot:Q5LND1
Length = 420
Score = 226 (84.6 bits), Expect = 6.1e-16, P = 6.1e-16
Identities = 80/277 (28%), Positives = 122/277 (44%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR GVR+AMP F A KLCPE + + + Y S R + + P SLDEA++
Sbjct: 82 ARIRGVRSAMPMFQALKLCPEAVVIKPRMSVYAEVSKQIRALMDELTPVVEPLSLDEAFM 141
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D++ R G + L + +E G+T S G++ N+ LAKV SD+ KP G V+
Sbjct: 142 DLSGTQRLHGHPPAVMLARLVKRMKDELGVTGSIGLSHNKFLAKVASDLEKPRGFSVI-- 199
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHSTADFF 186
R F+ P+R I GIG + L GI T ++L+ + L A F +
Sbjct: 200 GRAETAEFLRDKPVRLIWGIGPAAQESLERA-GIRTFTDLLRWEQEALVARFG-AMGQRL 257
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTF-SVTEDKALLYRKLAEIAEMLSADMQKEXXXXX 245
+ G KSIS+E TF T D +L + +AE ++ +
Sbjct: 258 WHLARGEDRRRVSAHDPIKSISNETTFFEDTGDADVLDGHIWRMAEKVADRAKARGLAGR 317
Query: 246 XXXXXXXXASFEVRTRAVTLQKYISSSEDILKHASVL 282
A+ V +R +L+ ++ I + A L
Sbjct: 318 VVTLKLKRANHRVLSRQQSLRDPTQMADRIYRTARAL 354
>UNIPROTKB|E2RPL9 [details] [associations]
symbol:REV1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0042276 "error-prone translesion synthesis"
evidence=IEA] [GO:0017125 "deoxycytidyl transferase activity"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0003684 "damaged DNA binding" evidence=IEA] [GO:0000287
"magnesium ion binding" evidence=IEA] InterPro:IPR001126
InterPro:IPR012112 InterPro:IPR017961 InterPro:IPR017963
Pfam:PF00817 Pfam:PF11799 PIRSF:PIRSF036573 PROSITE:PS50173
InterPro:IPR001357 Pfam:PF00533 GO:GO:0009411 GO:GO:0000287
GO:GO:0003684 SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172
GO:GO:0003887 GO:GO:0042276 Gene3D:3.30.1490.100 SUPFAM:SSF100879
GO:GO:0017125 GeneTree:ENSGT00530000062942 KO:K03515 CTD:51455
OMA:YRFCRGL EMBL:AAEX03007444 RefSeq:XP_538458.3
Ensembl:ENSCAFT00000003562 GeneID:481337 KEGG:cfa:481337
Uniprot:E2RPL9
Length = 1253
Score = 231 (86.4 bits), Expect = 1.5e-15, P = 1.5e-15
Identities = 92/337 (27%), Positives = 142/337 (42%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+ G++ M A++LCP L VP DF Y + + Y N A S DEA +
Sbjct: 515 ARQVGIKNGMFFGQAKQLCPNLQAVPYDFHAYKEVARTMYETLASYTHNIEAVSCDEALV 574
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
DITE+ E ++ E A +RT + ++ S G+ N LLA++ + KP+GQ+ L
Sbjct: 575 DITEILAETRLTPDEFANAVRTEIKDQTKCAASVGIGSNILLARMATRKAKPDGQYHLKP 634
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM-LQKGSLLCAVFSHSTADFF 186
+ V FI + + G+G+ E L + GI TC ++ + L F T
Sbjct: 635 EE--VDDFIRGQLVSNLPGVGRSMESKLNSL-GIKTCGDLQYMTMAKLQKEFGPKTGQML 691
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFSV--TEDK---ALLYRKLAEIAEMLSADMQKEX 241
GL + RKSIS+E + + T+ K A L EI L A K
Sbjct: 692 YRFCRGLDDRPVRTEKERKSISAEINYGIRFTQPKEAEAFLLNLSEEIQRRLEAAHVKGK 751
Query: 242 XXXXXXXXXXXXASFEVR-----------TRAVTLQKYISSSEDILKHA-SVLLKAELPV 289
A E TR VTL + S++ I K ++ +L +
Sbjct: 752 RLTLKVMVRKSGAPVETAKFGGHGICDNITRTVTLDQATDSAKIIGKATLNMFHTMKLNI 811
Query: 290 S-LRLIGLRVTQFNEDKVRAPSDPTQKTLTNFMTSGH 325
S +R +G+ V Q + P++ ++ SGH
Sbjct: 812 SDMRGVGIHVNQLVPTNPNPSACPSRPSVQ----SGH 844
>UNIPROTKB|F1P5H4 [details] [associations]
symbol:REV1 "DNA repair protein REV1" species:9031 "Gallus
gallus" [GO:0000287 "magnesium ion binding" evidence=IEA]
[GO:0003684 "damaged DNA binding" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0009411
"response to UV" evidence=IEA] [GO:0017125 "deoxycytidyl
transferase activity" evidence=IEA] [GO:0042276 "error-prone
translesion synthesis" evidence=IEA] InterPro:IPR001126
InterPro:IPR012112 InterPro:IPR017961 InterPro:IPR017963
Pfam:PF00817 Pfam:PF11799 PIRSF:PIRSF036573 PROSITE:PS50173
InterPro:IPR001357 Pfam:PF00533 GO:GO:0009411 GO:GO:0000287
GO:GO:0003684 SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172
GO:GO:0003887 GO:GO:0042276 Gene3D:3.30.1490.100 SUPFAM:SSF100879
GO:GO:0017125 GeneTree:ENSGT00530000062942 OMA:YRFCRGL
EMBL:AADN02017696 EMBL:AADN02017697 IPI:IPI01017381
Ensembl:ENSGALT00000027069 Uniprot:F1P5H4
Length = 1255
Score = 230 (86.0 bits), Expect = 1.9e-15, P = 1.9e-15
Identities = 73/235 (31%), Positives = 108/235 (45%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+ G++ M A+KLCP L V DF Y + ++ Y N A S DEA +
Sbjct: 526 ARQAGIKNGMFFGQAKKLCPNLQAVSYDFNAYKEVAQTVYEILASYTHNIEAVSCDEALV 585
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
DITE+ E ++ E+A +R + + T S G+ N LLA++ + KP+GQ+ L
Sbjct: 586 DITEILTETRLTPDELANAIRDEIKAQTKCTASVGMGSNILLARMATRKAKPDGQYHLKP 645
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL--LCAVFSHSTADF 185
+ V FI + + G+G+ E L + GI TC + LQ S+ L F T
Sbjct: 646 EE--VDDFIRGQLVTNLPGVGRSMESKLASL-GIRTCGD-LQCASMSKLQKEFGPKTGQM 701
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSV--TEDK---ALLYRKLAEIAEMLSA 235
GL + RKS+S+E + + T+ K A L EI L A
Sbjct: 702 LYRFCRGLDDRPVRTEKERKSVSAEINYGIRFTQPKEAEAFLLSLSEEIQRRLEA 756
>UNIPROTKB|Q4KWZ7 [details] [associations]
symbol:REV1 "DNA repair protein REV1" species:9031 "Gallus
gallus" [GO:0000287 "magnesium ion binding" evidence=IEA]
[GO:0003684 "damaged DNA binding" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0006260
"DNA replication" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006281 "DNA repair" evidence=TAS] [GO:0019985
"translesion synthesis" evidence=TAS] [GO:0006302 "double-strand
break repair" evidence=IMP] [GO:0002206 "gene conversion of
immunoglobulin genes" evidence=IMP] InterPro:IPR001126
InterPro:IPR012112 InterPro:IPR017961 InterPro:IPR017963
Pfam:PF00817 Pfam:PF11799 PIRSF:PIRSF036573 PROSITE:PS50173
InterPro:IPR001357 Pfam:PF00533 GO:GO:0005654 GO:GO:0000287
GO:GO:0003684 GO:GO:0006260 GO:GO:0006302 SMART:SM00292
SUPFAM:SSF52113 PROSITE:PS50172 Reactome:REACT_115612 GO:GO:0003887
GO:GO:0019985 eggNOG:COG0389 Gene3D:3.30.1490.100 SUPFAM:SSF100879
KO:K03515 EMBL:AY675169 IPI:IPI00571721 RefSeq:NP_001025982.2
UniGene:Gga.24037 ProteinModelPortal:Q4KWZ7 SMR:Q4KWZ7
STRING:Q4KWZ7 GeneID:418703 KEGG:gga:418703 CTD:51455
HOGENOM:HOG000154094 HOVERGEN:HBG054140 InParanoid:Q4KWZ7
OrthoDB:EOG4GF3DF NextBio:20821851 GO:GO:0002206 Uniprot:Q4KWZ7
Length = 1255
Score = 230 (86.0 bits), Expect = 1.9e-15, P = 1.9e-15
Identities = 73/235 (31%), Positives = 108/235 (45%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+ G++ M A+KLCP L V DF Y + ++ Y N A S DEA +
Sbjct: 526 ARQAGIKNGMFFGQAKKLCPNLQAVSYDFNAYKEVAQTVYEILASYTHNIEAVSCDEALV 585
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
DITE+ E ++ E+A +R + + T S G+ N LLA++ + KP+GQ+ L
Sbjct: 586 DITEILTETRLTPDELANAIRDEIKAQTKCTASVGMGSNILLARMATRKAKPDGQYHLKP 645
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL--LCAVFSHSTADF 185
+ V FI + + G+G+ E L + GI TC + LQ S+ L F T
Sbjct: 646 EE--VDDFIRGQLVTNLPGVGRSMESKLASL-GIRTCGD-LQCASMSKLQKEFGPKTGQM 701
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSV--TEDK---ALLYRKLAEIAEMLSA 235
GL + RKS+S+E + + T+ K A L EI L A
Sbjct: 702 LYRFCRGLDDRPVRTEKERKSVSAEINYGIRFTQPKEAEAFLLSLSEEIQRRLEA 756
>TAIR|locus:2156319 [details] [associations]
symbol:REV1 species:3702 "Arabidopsis thaliana"
[GO:0000287 "magnesium ion binding" evidence=IEA] [GO:0003684
"damaged DNA binding" evidence=IEA] [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=IEA;IDA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0006281 "DNA
repair" evidence=IEA;ISS] [GO:0016779 "nucleotidyltransferase
activity" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=IMP] [GO:0010224 "response to UV-B"
evidence=IMP] [GO:0007155 "cell adhesion" evidence=RCA] [GO:0010090
"trichome morphogenesis" evidence=RCA] [GO:0010228 "vegetative to
reproductive phase transition of meristem" evidence=RCA]
[GO:0016926 "protein desumoylation" evidence=RCA] [GO:0045010
"actin nucleation" evidence=RCA] [GO:0050665 "hydrogen peroxide
biosynthetic process" evidence=RCA] InterPro:IPR001126
InterPro:IPR012112 InterPro:IPR017961 InterPro:IPR017963
Pfam:PF00817 Pfam:PF11799 PIRSF:PIRSF036573 PROSITE:PS50173
InterPro:IPR001357 Pfam:PF00533 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000287 GO:GO:0003684 GO:GO:0006260
GO:GO:0006281 GO:GO:0006974 SMART:SM00292 SUPFAM:SSF52113
PROSITE:PS50172 GO:GO:0010224 GO:GO:0003887 eggNOG:COG0389
Gene3D:3.30.1490.100 SUPFAM:SSF100879 EMBL:AB016874 EMBL:AC002342
EMBL:AB187523 EMBL:EF016093 EMBL:EF016094 EMBL:EF016095
EMBL:EF016096 EMBL:EF016097 EMBL:EF016098 EMBL:AY080825
IPI:IPI00517369 IPI:IPI00554422 IPI:IPI00837466 IPI:IPI00891315
RefSeq:NP_001119373.1 RefSeq:NP_199288.4 UniGene:At.30056
ProteinModelPortal:A3EWL3 SMR:A3EWL3 STRING:A3EWL3 PRIDE:A3EWL3
EnsemblPlants:AT5G44750.2 GeneID:834504 KEGG:ath:AT5G44750
TAIR:At5g44750 HOGENOM:HOG000246421 KO:K03515 OMA:TIPYDFD
PhylomeDB:A3EWL3 ProtClustDB:CLSN2681660 Genevestigator:A3EWL3
Uniprot:A3EWL3
Length = 1105
Score = 227 (85.0 bits), Expect = 3.4e-15, P = 3.4e-15
Identities = 90/365 (24%), Positives = 165/365 (45%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR +GV+A M A+ LCP+L+ VP +F Y +D + ++ A S DEA+L
Sbjct: 421 ARAYGVKAGMFVRHAKDLCPQLVIVPYNFEAYEEVADQFYDILHRHCRKVQALSCDEAFL 480
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D++++ + +A +R + E G + SAG+ L+A++ + + KP GQ +
Sbjct: 481 DVSDLS---DVETEVLASTIRNEILETTGCSASAGIGGTMLMARLATRVAKPAGQLYISA 537
Query: 128 DRMAVMTFISSLPIRKIGGIGKVT-EHILRDVFGINTCEEM--LQKGSLLCAVFSHSTAD 184
++ V F+ LP+ + G+G V E +++ I TC ++ + K SL F T +
Sbjct: 538 EK--VEEFLDQLPVGTLPGVGSVLKEKLVKQ--NIQTCGQLRLISKDSLQ-KDFGVKTGE 592
Query: 185 FFLSVGLGLGSTNTPQARFRKSISSERTFSVT----EDKALLYRKLA-----EIA----- 230
S GL + + KSI +E + V +D +L + E++
Sbjct: 593 MLWSYSRGLDLRSVTAVQESKSIGAEVNWGVRFRDQQDVFILVQHFLQCLCKEVSLRLQG 652
Query: 231 -EML----SADMQKEXXXXXXXXXXXXXASFEVRTRAVTLQKYISSSEDILKHASVLLKA 285
EM+ + ++K + +R++T+ E +L+ S L
Sbjct: 653 CEMIGRTFTLKIKKRKKDAEEPTKYMGCGDCDNLSRSITVPAATDDIE-VLQRISKKLFG 711
Query: 286 E--LPVS-LRLIGLRVTQFNEDKVRAPSDPTQKTLTNFMTSGHASKKIVGDQNSLGSDI- 341
L V +R +GL+V++ + PS+ +TL ++++S A +I D N + +
Sbjct: 712 SFCLDVKEVRGVGLQVSKLDSAD---PSNKGSRTLKSWLSSAPAVVQIEQDDNVFAAKVR 768
Query: 342 -NDDC 345
N DC
Sbjct: 769 ENSDC 773
>UNIPROTKB|F1N787 [details] [associations]
symbol:REV1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0042276 "error-prone translesion synthesis"
evidence=IEA] [GO:0017125 "deoxycytidyl transferase activity"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0003684 "damaged DNA binding" evidence=IEA] [GO:0000287
"magnesium ion binding" evidence=IEA] InterPro:IPR001126
InterPro:IPR012112 InterPro:IPR017961 InterPro:IPR017963
Pfam:PF00817 Pfam:PF11799 PIRSF:PIRSF036573 PROSITE:PS50173
InterPro:IPR001357 GO:GO:0009411 GO:GO:0000287 GO:GO:0003684
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0003887
GO:GO:0042276 Gene3D:3.30.1490.100 SUPFAM:SSF100879 GO:GO:0017125
GeneTree:ENSGT00530000062942 OMA:YRFCRGL EMBL:DAAA02030163
EMBL:DAAA02030164 EMBL:DAAA02030165 EMBL:DAAA02030166
EMBL:DAAA02030167 EMBL:DAAA02030168 IPI:IPI00731687
Ensembl:ENSBTAT00000061518 Uniprot:F1N787
Length = 1202
Score = 223 (83.6 bits), Expect = 1.0e-14, P = 1.0e-14
Identities = 69/234 (29%), Positives = 104/234 (44%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+ G+R M A++LCP L VP DF Y + + Y + A S DEA +
Sbjct: 464 ARQVGIRNGMYFGYAKQLCPNLQAVPYDFHAYKEVAQTMYETLASYTHDIEAVSCDEALV 523
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
DITE+ E ++ E A +R + ++ S G+ N LLA++ + KP+GQ+ L
Sbjct: 524 DITEILAETRLTPDEFANAVRMEIKDQTKCAASVGIGSNILLARMATRKAKPDGQYHLKP 583
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM-LQKGSLLCAVFSHSTADFF 186
+ V FI + + G+G+ E L + GI TC ++ + L F T
Sbjct: 584 EE--VDDFIRGQLVTNLPGVGRSMESKLMSL-GIRTCGDLQYMTMAKLQKEFGSKTGQML 640
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFSVT-----EDKALLYRKLAEIAEMLSA 235
GL + RKSIS+E + + E +A L EI L A
Sbjct: 641 YRFCRGLDDRPVRTEKERKSISAEINYGIRFSQPKEAEAFLLSLSEEIQRRLEA 694
>UNIPROTKB|B4DG64 [details] [associations]
symbol:POLH "DNA polymerase eta" species:9606 "Homo
sapiens" [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0006290 "pyrimidine dimer repair" evidence=IEA] [GO:0006301
"postreplication repair" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR001126 InterPro:IPR017961
InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173
GO:GO:0005634 GO:GO:0005737 GO:GO:0003684 GO:GO:0006301
GO:GO:0003887 GO:GO:0006290 Gene3D:3.30.1490.100 SUPFAM:SSF100879
EMBL:AL353602 EMBL:AL355802 UniGene:Hs.655467 HGNC:HGNC:9181
HOVERGEN:HBG053633 InterPro:IPR017061 PIRSF:PIRSF036603
EMBL:AK294430 IPI:IPI00646080 SMR:B4DG64 STRING:B4DG64
Ensembl:ENST00000535400 Uniprot:B4DG64
Length = 651
Score = 159 (61.0 bits), Expect = 1.0e-14, Sum P(3) = 1.0e-14
Identities = 67/267 (25%), Positives = 122/267 (45%)
Query: 80 GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSL 139
G I EE+R ++ E G CSAG++ N++LAK+ +NKPN Q ++ + +V S +
Sbjct: 131 GAVIVEEMRAAIERETGFQCSAGISHNKVLAKLACGLNKPNRQTLVSHG--SVPQLFSQM 188
Query: 140 PIRKIGGIG-KVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHSTADFFLSVGLGLGSTN 197
PIRKI +G K+ ++ ++ GI E+ Q S L + F + ++ G+
Sbjct: 189 PIRKIRSLGGKLGASVI-EILGIEYMGELTQFTESQLQSHFGEKNGSWLYAMCRGIEHDP 247
Query: 198 TPQARFRKSISSERTFS-----VTEDKALLYR-KLA-EIAEMLSADMQKEXXXXXXXXXX 250
+ K+I + F T ++ + +LA E+ E L+ D + +
Sbjct: 248 VKPRQLPKTIGCSKNFPGKTALATREQVQWWLLQLAQELEERLTKD-RNDNDRVATQLVV 306
Query: 251 XXXASFEVRT----RAVTLQKYISS--SED---ILKHASVL-LKAELPVSLRLIGLRVTQ 300
+ R R L +Y + S D ++K+ + ++ E L ++ L T+
Sbjct: 307 SIRVQGDKRLSSLRRCCALTRYDAHKMSHDAFTVIKNCNTSGIQTEWSPPLTMLFLCATK 366
Query: 301 FNEDKVRAPSDPTQKTLTNFMTSGHAS 327
F+ APS T +T+F++S +S
Sbjct: 367 FSAS---APSSSTD--ITSFLSSDPSS 388
Score = 87 (35.7 bits), Expect = 1.0e-14, Sum P(3) = 1.0e-14
Identities = 28/85 (32%), Positives = 43/85 (50%)
Query: 22 ARKLCPELIFVPT-------DFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCR 74
A+KLCP+L+ + TKY S ++ ++ AS+DEAY+D+T +
Sbjct: 6 AKKLCPDLLLAQVRESRGKANLTKYREASVEVMEIMSRFAV-IERASIDEAYVDLTSAVQ 64
Query: 75 ER--GISGIEIAEELRTSVYEEAGL 97
ER + G I+ +L S Y E GL
Sbjct: 65 ERLQKLQGQPISADLLPSTYIE-GL 88
Score = 64 (27.6 bits), Expect = 1.0e-14, Sum P(3) = 1.0e-14
Identities = 27/100 (27%), Positives = 41/100 (41%)
Query: 383 CSFSNKISEVEKIHENEVSQLLEGNSLVLRQEEGSCCDGVEEVDKDITPDNKVGTSSNQK 442
C +K+ E K E+ L NS + S V EV + TP+ + + +Q
Sbjct: 516 CEGVSKLEESSKATPAEMD--LAHNSQSMHASSAS--KSVLEVTQKATPNPSLLAAEDQ- 570
Query: 443 DQFIWLDDYKCSLCGTEMPPSFIEERQEHSDFHLAERLQK 482
C CG+ +P + + EH D+H A LQK
Sbjct: 571 --------VPCEKCGSLVP---VWDMPEHMDYHFALELQK 599
>MGI|MGI:1891457 [details] [associations]
symbol:Polh "polymerase (DNA directed), eta (RAD 30
related)" species:10090 "Mus musculus" [GO:0000731 "DNA synthesis
involved in DNA repair" evidence=ISO] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IDA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006290
"pyrimidine dimer repair" evidence=IDA] [GO:0006301
"postreplication repair" evidence=IDA] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0010225 "response to UV-C"
evidence=ISO] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0016779 "nucleotidyltransferase activity" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR001126
InterPro:IPR017961 InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 MGI:MGI:1891457 GO:GO:0005634 GO:GO:0005737
GO:GO:0046872 GO:GO:0003684 GO:GO:0006260 GO:GO:0010225
GO:GO:0000731 GO:GO:0006301 GO:GO:0003887 GO:GO:0006290
eggNOG:COG0389 Gene3D:3.30.1490.100 SUPFAM:SSF100879 KO:K03509
CTD:5429 HOGENOM:HOG000115605 HOVERGEN:HBG053633 OMA:SPPLTML
OrthoDB:EOG4RBQJ8 InterPro:IPR017061 PIRSF:PIRSF036603
EMBL:AB027128 EMBL:AB037184 EMBL:AK036296 IPI:IPI00122040
RefSeq:NP_109640.1 UniGene:Mm.311585 ProteinModelPortal:Q9JJN0
SMR:Q9JJN0 IntAct:Q9JJN0 STRING:Q9JJN0 PhosphoSite:Q9JJN0
PRIDE:Q9JJN0 Ensembl:ENSMUST00000024749 GeneID:80905 KEGG:mmu:80905
UCSC:uc008crx.1 GeneTree:ENSGT00530000062942 InParanoid:Q9JJN0
NextBio:350254 Bgee:Q9JJN0 CleanEx:MM_POLH Genevestigator:Q9JJN0
GermOnline:ENSMUSG00000023953 Uniprot:Q9JJN0
Length = 694
Score = 149 (57.5 bits), Expect = 2.1e-14, Sum P(3) = 2.1e-14
Identities = 39/136 (28%), Positives = 69/136 (50%)
Query: 80 GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSL 139
G I EE+R ++ + G CSAG++ N++LAK+ +NKPN Q ++ + +V S +
Sbjct: 192 GAMIVEEMRAAIESKTGFQCSAGISHNKVLAKLACGLNKPNRQTLVSHG--SVPQLFSQM 249
Query: 140 PIRKIGGIG-KVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHSTADFFLSVGLGLGSTN 197
PIRKI +G K+ ++ +V GI ++ Q S L + F + ++ G+
Sbjct: 250 PIRKIRSLGGKLGASVI-EVLGIEYMGDLTQFTESQLQSHFGEKNGSWLYAMCRGIEHDP 308
Query: 198 TPQARFRKSISSERTF 213
+ K+I + F
Sbjct: 309 VKPRQLPKTIGCSKNF 324
Score = 103 (41.3 bits), Expect = 2.1e-14, Sum P(3) = 2.1e-14
Identities = 35/99 (35%), Positives = 48/99 (48%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPT-------DFTKYTYYSDLTRKVFCKYDPNFMAA 60
AR FGV M A+KLCP+L+ + TKY S ++ Y A
Sbjct: 54 ARAFGVTRNMWADDAKKLCPDLLLAQVRESRGKANLTKYREASVEVMEIM-SYFAVIERA 112
Query: 61 SLDEAYLDITEVCRER--GISGIEIAEELRTSVYEEAGL 97
S+DEAY+D+T +ER + G I+ +L S Y E GL
Sbjct: 113 SIDEAYIDLTSAVQERLQKLQGQPISADLLPSTYIE-GL 150
Score = 57 (25.1 bits), Expect = 2.1e-14, Sum P(3) = 2.1e-14
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 449 DDYKCSLCGTEMPPSFIEERQEHSDFHLAERLQK 482
D C C + +P + + EH+D+H A LQK
Sbjct: 612 DQVLCEKCDSLVP---VWDMPEHTDYHFALELQK 642
>UNIPROTKB|Q9UBZ9 [details] [associations]
symbol:REV1 "DNA repair protein REV1" species:9606 "Homo
sapiens" [GO:0000287 "magnesium ion binding" evidence=IEA]
[GO:0003684 "damaged DNA binding" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0017125 "deoxycytidyl transferase
activity" evidence=IEA] [GO:0042276 "error-prone translesion
synthesis" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0009411 "response to UV" evidence=IDA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006281 "DNA repair"
evidence=TAS] Reactome:REACT_216 InterPro:IPR001126
InterPro:IPR012112 InterPro:IPR017961 InterPro:IPR017963
Pfam:PF00817 Pfam:PF11799 PIRSF:PIRSF036573 PROSITE:PS50173
InterPro:IPR001357 Pfam:PF00533 GO:GO:0009411 GO:GO:0005654
GO:GO:0000287 GO:GO:0003684 GO:GO:0006260 EMBL:AC018690
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0003887
GO:GO:0042276 eggNOG:COG0389 Gene3D:3.30.1490.100 SUPFAM:SSF100879
PDB:3VU7 PDBsum:3VU7 GO:GO:0017125 PDB:2LSK PDBsum:2LSK KO:K03515
CTD:51455 HOGENOM:HOG000154094 HOVERGEN:HBG054140 OrthoDB:EOG4GF3DF
EMBL:AF151538 EMBL:AF206019 EMBL:AB047646 EMBL:AF357886
EMBL:AK002087 EMBL:AJ131720 IPI:IPI00008816 IPI:IPI00552928
IPI:IPI00552936 RefSeq:NP_001032961.1 RefSeq:NP_057400.1
UniGene:Hs.443077 PDB:2EBW PDB:2LSY PDB:3GQC PDBsum:2EBW
PDBsum:2LSY PDBsum:3GQC ProteinModelPortal:Q9UBZ9 SMR:Q9UBZ9
MINT:MINT-140323 STRING:Q9UBZ9 PhosphoSite:Q9UBZ9 DMDM:59798439
PaxDb:Q9UBZ9 PRIDE:Q9UBZ9 Ensembl:ENST00000258428
Ensembl:ENST00000393445 GeneID:51455 KEGG:hsa:51455 UCSC:uc002tac.3
UCSC:uc002tad.3 UCSC:uc002tae.1 GeneCards:GC02M100016
HGNC:HGNC:14060 HPA:HPA044534 HPA:HPA051036 MIM:606134
neXtProt:NX_Q9UBZ9 PharmGKB:PA162401120 InParanoid:Q9UBZ9
OMA:YRFCRGL PhylomeDB:Q9UBZ9 ChiTaRS:REV1 EvolutionaryTrace:Q9UBZ9
GenomeRNAi:51455 NextBio:55069 ArrayExpress:Q9UBZ9 Bgee:Q9UBZ9
CleanEx:HS_REV1 Genevestigator:Q9UBZ9 GermOnline:ENSG00000135945
Uniprot:Q9UBZ9
Length = 1251
Score = 220 (82.5 bits), Expect = 2.3e-14, P = 2.3e-14
Identities = 70/238 (29%), Positives = 105/238 (44%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+ G++ M A++LCP L VP DF Y + + Y N A S DEA +
Sbjct: 515 ARQLGIKNGMFFGHAKQLCPNLQAVPYDFHAYKEVAQTLYETLASYTHNIEAVSCDEALV 574
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
DITE+ E ++ E A +R + ++ S G+ N LLA++ + KP+GQ+ L
Sbjct: 575 DITEILAETKLTPDEFANAVRMEIKDQTKCAASVGIGSNILLARMATRKAKPDGQYHLKP 634
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM-LQKGSLLCAVFSHSTADFF 186
+ V FI + + G+G E L + GI TC ++ + L F T
Sbjct: 635 EE--VDDFIRGQLVTNLPGVGHSMESKLASL-GIKTCGDLQYMTMAKLQKEFGPKTGQML 691
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFSV--TEDK---ALLYRKLAEIAEMLSADMQK 239
GL + RKS+S+E + + T+ K A L EI L A K
Sbjct: 692 YRFCRGLDDRPVRTEKERKSVSAEINYGIRFTQPKEAEAFLLSLSEEIQRRLEATGMK 749
>UNIPROTKB|F1STE9 [details] [associations]
symbol:REV1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0042276 "error-prone translesion synthesis"
evidence=IEA] [GO:0017125 "deoxycytidyl transferase activity"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0003684 "damaged DNA binding" evidence=IEA] [GO:0000287
"magnesium ion binding" evidence=IEA] InterPro:IPR001126
InterPro:IPR012112 InterPro:IPR017961 InterPro:IPR017963
Pfam:PF00817 Pfam:PF11799 PIRSF:PIRSF036573 PROSITE:PS50173
InterPro:IPR001357 Pfam:PF00533 GO:GO:0009411 GO:GO:0000287
GO:GO:0003684 SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172
GO:GO:0003887 GO:GO:0042276 Gene3D:3.30.1490.100 SUPFAM:SSF100879
GO:GO:0017125 GeneTree:ENSGT00530000062942 OMA:YRFCRGL
EMBL:FP326722 EMBL:CU972417 EMBL:CU694748
Ensembl:ENSSSCT00000008958 Uniprot:F1STE9
Length = 1253
Score = 220 (82.5 bits), Expect = 2.3e-14, P = 2.3e-14
Identities = 62/209 (29%), Positives = 96/209 (45%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+ G+R M A++LCP L VP DF Y + + Y N A S DEA +
Sbjct: 514 ARQVGIRNGMYFGQAKQLCPSLQAVPYDFHAYKEVARTMYETLASYTHNIEAVSCDEALV 573
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
DITE+ E ++ E A +R + ++ S G+ N LLA++ + KP+GQ+ L
Sbjct: 574 DITEILAETRLTPDEFANAVRMEIKDQTKCAASVGIGSNILLARMATRKAKPDGQYHLKP 633
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM-LQKGSLLCAVFSHSTADFF 186
+ V FI + + G+G+ E L + GI TC ++ + L F T
Sbjct: 634 EE--VDDFIRGQLVTNLPGVGRSMESKLMSL-GIRTCGDLQYMTMAKLQKEFGPKTGQML 690
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFSV 215
GL + RKS+S+E + +
Sbjct: 691 YRFCRGLDDRPVRTEKERKSVSAEINYGI 719
>RGD|1309893 [details] [associations]
symbol:Polh "polymerase (DNA directed), eta" species:10116
"Rattus norvegicus" [GO:0000731 "DNA synthesis involved in DNA
repair" evidence=IEA;ISO] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA;ISO] [GO:0005575 "cellular_component" evidence=ND]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA;ISO] [GO:0006290 "pyrimidine dimer repair"
evidence=IEA;ISO] [GO:0006301 "postreplication repair"
evidence=IEA;ISO] [GO:0008150 "biological_process" evidence=ND]
[GO:0010225 "response to UV-C" evidence=IEA;ISO] [GO:0005730
"nucleolus" evidence=ISO] InterPro:IPR001126 InterPro:IPR017961
InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173
RGD:1309893 GO:GO:0005634 GO:GO:0005737 GO:GO:0003684 GO:GO:0010225
GO:GO:0000731 GO:GO:0006301 GO:GO:0003887 GO:GO:0006290
EMBL:CH473987 Gene3D:3.30.1490.100 SUPFAM:SSF100879 KO:K03509
CTD:5429 OMA:SPPLTML OrthoDB:EOG4RBQJ8 InterPro:IPR017061
PIRSF:PIRSF036603 GeneTree:ENSGT00530000062942 IPI:IPI00194322
RefSeq:NP_001101674.1 UniGene:Rn.53711 Ensembl:ENSRNOT00000026049
GeneID:316235 KEGG:rno:316235 UCSC:RGD:1309893 NextBio:670614
Uniprot:D4ADZ0
Length = 689
Score = 149 (57.5 bits), Expect = 5.3e-14, Sum P(3) = 5.3e-14
Identities = 38/136 (27%), Positives = 69/136 (50%)
Query: 80 GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSL 139
G I EE+R ++ + G CSAG++ N++LAK+ +NKPN Q ++ + +V S +
Sbjct: 192 GAVIVEEMRAAIERKTGFQCSAGISHNKVLAKLACGLNKPNRQTLVSHG--SVPQLFSQM 249
Query: 140 PIRKIGGIG-KVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHSTADFFLSVGLGLGSTN 197
PIRKI +G K+ ++ DV G+ ++ Q + L + F + ++ G+
Sbjct: 250 PIRKIRSLGGKLGASVI-DVLGVEYMGDLTQFTEAQLQSHFGEKNGSWLYAMCRGIEHEP 308
Query: 198 TPQARFRKSISSERTF 213
+ K+I + F
Sbjct: 309 VKPRQLPKTIGCSKNF 324
Score = 99 (39.9 bits), Expect = 5.3e-14, Sum P(3) = 5.3e-14
Identities = 33/99 (33%), Positives = 48/99 (48%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPT-------DFTKYTYYSDLTRKVFCKYDPNFMAA 60
AR FGV M A+KLCP+L+ + TKY S ++ + A
Sbjct: 54 ARAFGVTRNMWADDAKKLCPDLLLAQVRESRGKANLTKYREASVEVMEIMSHFAV-IERA 112
Query: 61 SLDEAYLDITEVCRER--GISGIEIAEELRTSVYEEAGL 97
S+DEAY+D+T +ER + G ++ +L S Y E GL
Sbjct: 113 SIDEAYIDLTNAVQERLEKLQGQPVSADLLPSTYIE-GL 150
Score = 57 (25.1 bits), Expect = 5.3e-14, Sum P(3) = 5.3e-14
Identities = 14/55 (25%), Positives = 26/55 (47%)
Query: 428 DITPDNKVGTSSNQKDQFIWLDDYKCSLCGTEMPPSFIEERQEHSDFHLAERLQK 482
++ ++ + +S + Q D C C + +P + + EH D+H A LQK
Sbjct: 587 NVAGNSSLAYNSQEMTQRAAEDQVLCEKCDSLVP---VWDMPEHLDYHFALELQK 638
>UNIPROTKB|J3KTN3 [details] [associations]
symbol:POLI "DNA polymerase iota" species:9606 "Homo
sapiens" [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=IEA] InterPro:IPR001126
InterPro:IPR017963 Pfam:PF00817 PROSITE:PS50173 GO:GO:0003684
GO:GO:0006281 GO:GO:0003887 EMBL:AC093462 HGNC:HGNC:9182
ChiTaRS:POLI Ensembl:ENST00000583136 Uniprot:J3KTN3
Length = 222
Score = 148 (57.2 bits), Expect = 5.7e-14, Sum P(2) = 5.7e-14
Identities = 40/102 (39%), Positives = 61/102 (59%)
Query: 67 LDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP 126
+++ +V R + G +IA E+R ++Y + GLT AGVA N+LLAK+ S + KPN Q VL
Sbjct: 120 INLLDVLHIRLLVGSQIAAEMREAMYNQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLL 179
Query: 127 NDRMAVMTFISSLP-IRKIGGIGKVTEHILRDVFGINTCEEM 167
+ + I SL I++I GIG T L + GIN+ ++
Sbjct: 180 PE--SCQHLIHSLNHIKEIPGIGYKTAKCL-EALGINSVRDL 218
Score = 89 (36.4 bits), Expect = 5.7e-14, Sum P(2) = 5.7e-14
Identities = 21/70 (30%), Positives = 37/70 (52%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVP-TDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAY 66
AR+ GV+ M A++ CP+L+ V D T+Y S ++ ++ P DE +
Sbjct: 27 ARKLGVKKLMNVRDAKEKCPQLVLVNGEDLTRYREMSYKVTELLEEFSPVVERLGFDENF 86
Query: 67 LDITEVCRER 76
+D+TE+ +R
Sbjct: 87 VDLTEMVEKR 96
>MGI|MGI:1929074 [details] [associations]
symbol:Rev1 "REV1 homolog (S. cerevisiae)" species:10090
"Mus musculus" [GO:0000287 "magnesium ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003684 "damaged DNA
binding" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0009411 "response to UV" evidence=ISO]
[GO:0016740 "transferase activity" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0017125
"deoxycytidyl transferase activity" evidence=IDA] [GO:0042276
"error-prone translesion synthesis" evidence=IDA] [GO:0046872
"metal ion binding" evidence=IEA] InterPro:IPR001126
InterPro:IPR012112 InterPro:IPR017961 InterPro:IPR017963
Pfam:PF00817 Pfam:PF11799 PIRSF:PIRSF036573 PROSITE:PS50173
InterPro:IPR001357 MGI:MGI:1929074 Pfam:PF00533 GO:GO:0005634
GO:GO:0009411 GO:GO:0000287 GO:GO:0003684 GO:GO:0006260
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0003887
GO:GO:0042276 eggNOG:COG0389 Gene3D:3.30.1490.100 SUPFAM:SSF100879
PDB:4FJO PDBsum:4FJO GO:GO:0017125 GeneTree:ENSGT00530000062942
PDB:2LSJ PDBsum:2LSJ KO:K03515 CTD:51455 HOGENOM:HOG000154094
HOVERGEN:HBG054140 OrthoDB:EOG4GF3DF OMA:YRFCRGL ChiTaRS:REV1
EMBL:AB057418 EMBL:AF179302 EMBL:BC058093 IPI:IPI00396706
RefSeq:NP_062516.2 UniGene:Mm.389103 PDB:2LSG PDBsum:2LSG
ProteinModelPortal:Q920Q2 SMR:Q920Q2 DIP:DIP-41772N IntAct:Q920Q2
STRING:Q920Q2 PhosphoSite:Q920Q2 PRIDE:Q920Q2
Ensembl:ENSMUST00000027251 GeneID:56210 KEGG:mmu:56210
UCSC:uc007asp.1 InParanoid:Q920Q2 NextBio:312050 Bgee:Q920Q2
CleanEx:MM_REV1 Genevestigator:Q920Q2 GermOnline:ENSMUSG00000026082
Uniprot:Q920Q2
Length = 1249
Score = 213 (80.0 bits), Expect = 1.3e-13, P = 1.3e-13
Identities = 68/234 (29%), Positives = 104/234 (44%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+ G++ M A++LCP L VP DF + + Y + A S DEA +
Sbjct: 513 ARQVGIKNGMFFGYAKQLCPNLQAVPYDFHACREVAQAMYETLASYTHSIEAVSCDEALI 572
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T++ E +S E A LR + ++ S G+ N LLA++ + KP+GQ+ L
Sbjct: 573 DVTDILAETKLSPEEFAAALRIEIKDKTKCAASVGIGSNILLARMATKKAKPDGQYHLQP 632
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM-LQKGSLLCAVFSHSTADFF 186
D V FI + + G+G+ E L + GI TC ++ + L F T
Sbjct: 633 DE--VDDFIRGQLVTNLPGVGRSMESKLASL-GIKTCGDLQCLTMAKLQKEFGPKTGQML 689
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFSV--TEDK---ALLYRKLAEIAEMLSA 235
GL + RKS+S+E + + T+ K A L EI L A
Sbjct: 690 YRFCRGLDDRPVRTEKERKSVSAEINYGIRFTQPKEAEAFLLSLSEEIQRRLEA 743
>TAIR|locus:2156309 [details] [associations]
symbol:POLH "Y-family DNA polymerase H" species:3702
"Arabidopsis thaliana" [GO:0003684 "damaged DNA binding"
evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA;IDA] [GO:0005634 "nucleus" evidence=ISM] [GO:0006281
"DNA repair" evidence=IEA;ISS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0010224 "response to UV-B" evidence=IMP]
[GO:0042276 "error-prone translesion synthesis" evidence=IDA]
[GO:0006261 "DNA-dependent DNA replication" evidence=RCA]
[GO:0042732 "D-xylose metabolic process" evidence=RCA]
InterPro:IPR001126 InterPro:IPR017961 InterPro:IPR017963
Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173 EMBL:CP002688
GO:GO:0003684 GO:GO:0010224 GO:GO:0003887 GO:GO:0042276
Gene3D:3.30.1490.100 SUPFAM:SSF100879 HSSP:P96022 KO:K03509
InterPro:IPR017061 PIRSF:PIRSF036603 EMBL:AJ416380 IPI:IPI00537089
RefSeq:NP_568638.2 UniGene:At.19023 SMR:Q8H2D5 IntAct:Q8H2D5
STRING:Q8H2D5 EnsemblPlants:AT5G44740.2 GeneID:834503
KEGG:ath:AT5G44740 TAIR:At5g44740 InParanoid:Q8H2D5 OMA:CPLRYGT
ProtClustDB:CLSN2680435 Genevestigator:Q8H2D5 Uniprot:Q8H2D5
Length = 672
Score = 182 (69.1 bits), Expect = 2.6e-13, Sum P(2) = 2.6e-13
Identities = 55/175 (31%), Positives = 92/175 (52%)
Query: 74 RERGIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAV 132
R++ +S GI I ELR V +E TCSAG+A N++LAK+ S +NKP Q V+P AV
Sbjct: 181 RDKLLSCGIIIVAELRKQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTVVPY--AAV 238
Query: 133 MTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHSTADFFLSVGL 191
+SSLPI+K+ +G L+ G++T ++LQ + L + +T + ++
Sbjct: 239 QELLSSLPIKKMKQLGGKLGTSLQTDLGVDTVGDLLQFSETKLQEHYGVNTGTWLWNIAR 298
Query: 192 GLGSTNTPQARFRKSISSERTF-------SVTEDKALLYRKLAEIAEMLSADMQK 239
G+ KS S +TF S++ + L + E++E L +D+++
Sbjct: 299 GISGEEVQGRLLPKSHGSGKTFPGPRALKSLSTVQHWLNQLSEELSERLGSDLEQ 353
Score = 72 (30.4 bits), Expect = 2.6e-13, Sum P(2) = 2.6e-13
Identities = 23/71 (32%), Positives = 33/71 (46%)
Query: 8 ARRFGVRAAMPGFIARKLCPE--LIFVPT-----DFTKYTYYSDLTRKVFCKYDPNFMAA 60
AR+ GV+ +M G A+ CP+ L+ VP D Y + K A
Sbjct: 59 ARKCGVKRSMRGDEAKAACPQIQLVQVPVARGKADLNLYRSAGSEVVSILAK-SGKCERA 117
Query: 61 SLDEAYLDITE 71
S+DE YLD+T+
Sbjct: 118 SIDEVYLDLTD 128
>RGD|1306715 [details] [associations]
symbol:Rev1 "REV1, polymerase (DNA directed)" species:10116
"Rattus norvegicus" [GO:0000287 "magnesium ion binding"
evidence=IEA] [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0009411 "response to UV" evidence=IEA;ISO] [GO:0017125
"deoxycytidyl transferase activity" evidence=IEA;ISO] [GO:0042276
"error-prone translesion synthesis" evidence=IEA;ISO]
InterPro:IPR001126 InterPro:IPR012112 InterPro:IPR017961
InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799 PIRSF:PIRSF036573
PROSITE:PS50173 InterPro:IPR001357 Pfam:PF00533 RGD:1306715
GO:GO:0000287 GO:GO:0003684 GO:GO:0006281 SMART:SM00292
SUPFAM:SSF52113 PROSITE:PS50172 EMBL:CH473965 GO:GO:0003887
Gene3D:3.30.1490.100 SUPFAM:SSF100879 GeneTree:ENSGT00530000062942
KO:K03515 CTD:51455 OrthoDB:EOG4GF3DF IPI:IPI00951348
RefSeq:NP_001101683.1 UniGene:Rn.94641 Ensembl:ENSRNOT00000067197
GeneID:316344 KEGG:rno:316344 UCSC:RGD:1306715 NextBio:670745
Uniprot:D3ZRU9
Length = 1119
Score = 209 (78.6 bits), Expect = 3.2e-13, P = 3.2e-13
Identities = 67/234 (28%), Positives = 102/234 (43%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+ G++ M A++LCP L VP DF + + Y + A S DEA +
Sbjct: 513 ARQVGIKNGMFFGHAKQLCPNLQAVPYDFHACREVAQALYETLASYTHSIEAVSCDEALI 572
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T++ E +S E A LR + + S G+ N LLA++ + KP+GQ+ L
Sbjct: 573 DVTDILAETKLSPEEFAAALRMEIKNKTQCAASVGIGSNILLARMATKKAKPDGQYHLQP 632
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM-LQKGSLLCAVFSHSTADFF 186
D V FI + + G+G+ E L + GI TC ++ + L F T
Sbjct: 633 DE--VDDFIRGQLVTSLPGVGRSMESKLASL-GIKTCGDLQCLTMAKLQKEFGPKTGQML 689
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFSVT-----EDKALLYRKLAEIAEMLSA 235
GL + RKS+S+E + + E +A L EI L A
Sbjct: 690 YRFCRGLDDRPVRTEKERKSVSAEINYGIRFTQPREAEAFLLSLSGEIQSRLEA 743
>ZFIN|ZDB-GENE-060421-4949 [details] [associations]
symbol:polh "polymerase (DNA directed), eta"
species:7955 "Danio rerio" [GO:0003684 "damaged DNA binding"
evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR001126
InterPro:IPR017961 InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 ZFIN:ZDB-GENE-060421-4949 GO:GO:0003684
GO:GO:0006281 GO:GO:0003887 Gene3D:3.30.1490.100 SUPFAM:SSF100879
InterPro:IPR017061 PIRSF:PIRSF036603 GeneTree:ENSGT00530000062942
EMBL:AL929536 IPI:IPI00758987 Ensembl:ENSDART00000139589
OMA:MKSLEKH ArrayExpress:F1Q7Z9 Bgee:F1Q7Z9 Uniprot:F1Q7Z9
Length = 749
Score = 147 (56.8 bits), Expect = 7.2e-13, Sum P(4) = 7.2e-13
Identities = 39/136 (28%), Positives = 64/136 (47%)
Query: 80 GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSL 139
G I E++R +V E G CSAG++ N++LAK+ +NKPN Q VLP +V S+L
Sbjct: 192 GALIVEQMRAAVEEHTGFRCSAGISHNKVLAKLACGLNKPNRQTVLPLS--SVPQLFSTL 249
Query: 140 PIRKIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHSTADFFLSVGLGLGSTNT 198
PI KI +G + + + ++ + + L F T + + G+
Sbjct: 250 PISKIRNLGGKLGSSITETLSVENMGDLTRFSRAQLEQHFGDKTGPWLYDLCRGIEFEPV 309
Query: 199 PQARFRKSISSERTFS 214
+ KSI + F+
Sbjct: 310 KPRQLPKSIGCSKNFA 325
Score = 80 (33.2 bits), Expect = 7.2e-13, Sum P(4) = 7.2e-13
Identities = 29/76 (38%), Positives = 39/76 (51%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIF--VPTDFTK--YTYYSDLTRKVFCKYDPNFMA---A 60
AR GV M ARKLCP+L VP K T+Y + + +V + F A
Sbjct: 54 ARAHGVGRNMFADDARKLCPDLQVARVPEAHGKADLTHYREASVEVI-EVMSRFAVIERA 112
Query: 61 SLDEAYLDITEVCRER 76
S+DEAY+D+T +ER
Sbjct: 113 SIDEAYMDLTASVQER 128
Score = 62 (26.9 bits), Expect = 7.2e-13, Sum P(4) = 7.2e-13
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 453 CSLCGTEMPPSFIEERQEHSDFHLAERLQKE-ESGSDLRILT 493
C CG ++ + E EH+D+H A LQK SGS ++ T
Sbjct: 686 CERCGMKV---LVWEFPEHADYHFALDLQKSFSSGSPSQMKT 724
Score = 45 (20.9 bits), Expect = 7.2e-13, Sum P(4) = 7.2e-13
Identities = 17/80 (21%), Positives = 34/80 (42%)
Query: 381 ENCSFSNKISEVEKIHENEV-SQLLEGNSLVLRQEEGSCCDGVEEVDKDITPDNKVGTSS 439
EN + + + + + + E+ + L G+ E +C D + I+ + +
Sbjct: 480 ENTTSISAFFQRKSLEKQEIQNSLCPGDQSTSASGEHACGDTAAQKTTAISTFLQRESLE 539
Query: 440 NQKDQFIWLDDYKCSLCGTE 459
Q+ Q + LDD S+C E
Sbjct: 540 KQEIQNVSLDDEDQSVCAPE 559
>UNIPROTKB|F1MZ79 [details] [associations]
symbol:POLH "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0010225 "response to UV-C" evidence=IEA] [GO:0006301
"postreplication repair" evidence=IEA] [GO:0006290 "pyrimidine
dimer repair" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=IEA] [GO:0000731 "DNA synthesis
involved in DNA repair" evidence=IEA] [GO:0003684 "damaged DNA
binding" evidence=IEA] InterPro:IPR001126 InterPro:IPR017961
InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173
GO:GO:0005634 GO:GO:0005737 GO:GO:0003684 GO:GO:0010225
GO:GO:0000731 GO:GO:0006301 GO:GO:0003887 GO:GO:0006290
Gene3D:3.30.1490.100 SUPFAM:SSF100879 OMA:SPPLTML
InterPro:IPR017061 PIRSF:PIRSF036603 GeneTree:ENSGT00530000062942
EMBL:DAAA02055099 IPI:IPI00691559 Ensembl:ENSBTAT00000007900
Uniprot:F1MZ79
Length = 710
Score = 134 (52.2 bits), Expect = 1.3e-12, Sum P(3) = 1.3e-12
Identities = 29/91 (31%), Positives = 53/91 (58%)
Query: 80 GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSL 139
G I EE+R ++ + G CSAG++ N++LAK+ +NKPN Q ++ + +V + +
Sbjct: 192 GAVIVEEMRAAIERQTGFQCSAGISHNKVLAKLACGLNKPNRQTLVSHG--SVPQLFNQV 249
Query: 140 PIRKIGGIG-KVTEHILRDVFGINTCEEMLQ 169
PI KI +G K+ ++ ++ G+ E+ Q
Sbjct: 250 PISKIRNLGGKLGASVI-EILGVEYMGELTQ 279
Score = 89 (36.4 bits), Expect = 1.3e-12, Sum P(3) = 1.3e-12
Identities = 27/76 (35%), Positives = 37/76 (48%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVP-------TDFTKYTYYSDLTRKVFCKYDPNFMAA 60
AR FGV M A+KLCP+L+ + TKY S +V ++
Sbjct: 53 ARAFGVTRNMWADDAKKLCPDLLLAQIRELHGKANLTKYRDASMEVMEVMSRFAV-MERG 111
Query: 61 SLDEAYLDITEVCRER 76
S+DEAYLD+T +ER
Sbjct: 112 SIDEAYLDLTSAVQER 127
Score = 70 (29.7 bits), Expect = 1.3e-12, Sum P(3) = 1.3e-12
Identities = 21/86 (24%), Positives = 40/86 (46%)
Query: 434 KVGTSSNQKDQFIWLDDY-KCSLCGTEMPPSFIEERQEHSDFHLAERLQK---EESGSDL 489
+V + F+ +D C CG+ +P + + EHSD+H A LQ + S+
Sbjct: 612 EVAQKATMTSSFLAAEDQVPCEKCGSLVP---VWDMPEHSDYHFALELQNSFLQPHSSNP 668
Query: 490 RIL-THRERCVRTQRDHIASHRKRKK 514
+++ + R + +AS+ KR +
Sbjct: 669 QVVPASSPQSKRNPKSPLASNNKRPR 694
Score = 41 (19.5 bits), Expect = 1.1e-09, Sum P(3) = 1.1e-09
Identities = 16/56 (28%), Positives = 26/56 (46%)
Query: 164 CEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDK 219
CE+ML+ GS A LS L ST+ + + +++S +F ED+
Sbjct: 576 CEKMLKLGSPKTTPTEMDLAQNSLSSLASLTSTSALEVAQKATMTS--SFLAAEDQ 629
>MGI|MGI:1347081 [details] [associations]
symbol:Poli "polymerase (DNA directed), iota" species:10090
"Mus musculus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003684
"damaged DNA binding" evidence=IEA] [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=IDA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0008152 "metabolic process"
evidence=IDA] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0016779 "nucleotidyltransferase activity" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR001126
InterPro:IPR017961 InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 MGI:MGI:1347081 GO:GO:0005634 GO:GO:0046872
GO:GO:0003684 GO:GO:0006260 GO:GO:0006281 GO:GO:0003887
eggNOG:COG0389 Gene3D:3.30.1490.100 InterPro:IPR024728 Pfam:PF11798
SUPFAM:SSF100879 GeneTree:ENSGT00530000062942 CTD:11201
HOGENOM:HOG000234325 HOVERGEN:HBG053634 KO:K03510 OrthoDB:EOG46T310
EMBL:AF151691 EMBL:AY515316 EMBL:AY515317 EMBL:BC082278
IPI:IPI00553425 IPI:IPI00985545 RefSeq:NP_001129562.1
UniGene:Mm.244352 PDB:2KWU PDB:2KWV PDB:3AI4 PDBsum:2KWU
PDBsum:2KWV PDBsum:3AI4 ProteinModelPortal:Q6R3M4 SMR:Q6R3M4
IntAct:Q6R3M4 STRING:Q6R3M4 PhosphoSite:Q6R3M4 PRIDE:Q6R3M4
Ensembl:ENSMUST00000043286 Ensembl:ENSMUST00000161542 GeneID:26447
KEGG:mmu:26447 UCSC:uc008foi.2 UCSC:uc008fok.2 InParanoid:Q6R3M4
BindingDB:Q6R3M4 ChEMBL:CHEMBL5159 NextBio:304545 Bgee:Q6R3M4
CleanEx:MM_POLI Genevestigator:Q6R3M4 GermOnline:ENSMUSG00000038425
Uniprot:Q6R3M4
Length = 717
Score = 157 (60.3 bits), Expect = 3.6e-12, Sum P(3) = 3.6e-12
Identities = 41/102 (40%), Positives = 62/102 (60%)
Query: 67 LDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP 126
+++ + R + G +IA E+R ++Y + GLT AGVAPN+LLAK+ S + KPN Q VL
Sbjct: 163 VNLHNIMHRRLVVGSQIAAEMREAMYNQLGLTGCAGVAPNKLLAKLVSGVFKPNQQTVLL 222
Query: 127 NDRMAVMTFISSLP-IRKIGGIGKVTEHILRDVFGINTCEEM 167
+ + I SL I++I GIG T L +V GIN+ ++
Sbjct: 223 PE--SCQHLIHSLNHIKEIPGIGYKTAKRL-EVLGINSVHDL 261
Score = 89 (36.4 bits), Expect = 3.6e-12, Sum P(3) = 3.6e-12
Identities = 21/70 (30%), Positives = 37/70 (52%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVP-TDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAY 66
AR+ GVR M A++ CP+L+ V D ++Y S ++ ++ P DE +
Sbjct: 70 ARKLGVRKLMNVRDAKEKCPQLVLVNGEDLSRYREMSYKVTELLEEFSPAVERLGFDENF 129
Query: 67 LDITEVCRER 76
+D+TE+ +R
Sbjct: 130 VDLTEMVEKR 139
Score = 41 (19.5 bits), Expect = 3.6e-12, Sum P(3) = 3.6e-12
Identities = 12/50 (24%), Positives = 21/50 (42%)
Query: 472 SDFHLAERLQKEESGSDLRILTHRERCVRTQRDHIASHRKRKKQKLFEKE 521
S FH LQ E+ S R + ++ + SH+ + ++L E
Sbjct: 627 SGFHSFPNLQTEQLFSTHRTVDSHKQTATASHQGLESHQGLESRELDSAE 676
>UNIPROTKB|F1PDA5 [details] [associations]
symbol:POLI "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0006281
"DNA repair" evidence=IEA] [GO:0003684 "damaged DNA binding"
evidence=IEA] InterPro:IPR001126 InterPro:IPR017961
InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173
GO:GO:0005634 GO:GO:0003684 GO:GO:0006281 GO:GO:0003887
Gene3D:3.30.1490.100 SUPFAM:SSF100879 GeneTree:ENSGT00530000062942
OMA:VFYELPE EMBL:AAEX03000145 Ensembl:ENSCAFT00000000242
Uniprot:F1PDA5
Length = 702
Score = 156 (60.0 bits), Expect = 3.7e-12, Sum P(2) = 3.7e-12
Identities = 51/172 (29%), Positives = 89/172 (51%)
Query: 66 YLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL 125
Y+++ ++ R + G +IA E+R ++Y + GLT AGVA N+LLAK+ S + KPN Q VL
Sbjct: 148 YINLHDILHIRLLVGSQIAAEMREAMYNQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVL 207
Query: 126 PNDRMAVMTFISSLP-IRKIGGIGKVTEHILRDVFGINTCEEMLQKGS-LLCAVFSHSTA 183
+ V+ I SL ++++ GIG T L + GI++ ++ S +L S A
Sbjct: 208 LPESSQVL--IQSLNHVKEMPGIGYKTAKRL-EALGISSVYDLQTFSSKILEKELGISVA 264
Query: 184 DFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEI-AEMLS 234
+ G ++ + +S S E +F + + K+ E+ A +L+
Sbjct: 265 QRIQKLSFGEDNSPVTPSGPPQSFSEEDSFKKCSSEVEVKNKIEELLASLLN 316
Score = 89 (36.4 bits), Expect = 3.7e-12, Sum P(2) = 3.7e-12
Identities = 21/70 (30%), Positives = 37/70 (52%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVP-TDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAY 66
AR+ GV+ M A++ CP+L+ V D T+Y S ++ ++ P DE +
Sbjct: 56 ARKLGVKKLMNVRDAKEKCPQLVLVNGEDLTRYREMSYKVTELLEEFSPVVERLGFDENF 115
Query: 67 LDITEVCRER 76
+D+TE+ +R
Sbjct: 116 VDLTEMVEKR 125
>FB|FBgn0037141 [details] [associations]
symbol:DNApol-eta "DNApol-eta" species:7227 "Drosophila
melanogaster" [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IMP;IDA;NAS] [GO:0019985 "translesion synthesis"
evidence=ISS;NAS;IDA] [GO:0003684 "damaged DNA binding"
evidence=IEA] [GO:0000724 "double-strand break repair via
homologous recombination" evidence=IMP] InterPro:IPR001126
InterPro:IPR017961 InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 GO:GO:0003684 GO:GO:0000724 GO:GO:0003887
GO:GO:0019985 eggNOG:COG0389 Gene3D:3.30.1490.100 SUPFAM:SSF100879
HSSP:P96022 InterPro:IPR017061 PIRSF:PIRSF036603 EMBL:AY058771
EMBL:AB049433 EMBL:AB036766 IntAct:Q9GNC0 STRING:Q9GNC0
FlyBase:FBgn0037141 InParanoid:Q9GNC0 OrthoDB:EOG4XPNX1
Uniprot:Q9GNC0
Length = 885
Score = 177 (67.4 bits), Expect = 4.2e-12, Sum P(2) = 4.2e-12
Identities = 56/207 (27%), Positives = 100/207 (48%)
Query: 41 YYSDLTRKVFCKY-DPNFMAASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTC 99
Y + +T + Y D S D+ L R + G +A E+R +V +E G C
Sbjct: 168 YVNKITNRFANPYMDDERYQMSYDQNDLPAVRQSDIRLLIGASVAGEVRAAVKKETGYEC 227
Query: 100 SAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVF 159
SAG+A N++LAK+ + +NKPN Q +LP A + SLP+ KI G+G ++ +
Sbjct: 228 SAGIAHNKILAKLAAGMNKPNKQTILPLTETA--SLFDSLPVGKIKGLGGKFGEVVCETL 285
Query: 160 GINTCEEMLQKGSL-LCAVFSHSTADFFLSVGLGLG-STNTPQARFRKSISSERTF---- 213
GI ++++ + L F + ++ G+ TP+ + KSI + F
Sbjct: 286 GIKFMGQVVKFSEVDLQRKFDEKNGTWLFNISRGIDLEAVTPRF-YSKSIGCCKKFPGRN 344
Query: 214 SVTEDKALLYRKLAEIAEMLSADMQKE 240
++T K L + L E++ ++ ++K+
Sbjct: 345 NITGLKTLQHW-LGELSSEINDRLEKD 370
Score = 69 (29.3 bits), Expect = 4.2e-12, Sum P(2) = 4.2e-12
Identities = 24/78 (30%), Positives = 38/78 (48%)
Query: 463 SFIE--ERQEHSDFHLAERLQKEESGSDLRILT---HRERCVRTQRDHIASHRKRKKQKL 517
+FI+ + EH D+H+A+ LQ+E + DLR T ++E+ Q S +K
Sbjct: 810 AFIKCVDMPEHLDYHVAKNLQRELNQQDLRTRTAALNKEKTSPVQPKK-QSQKKLNSTIS 868
Query: 518 FEKEGTHIPIDMFFAKRN 535
GT I FF++ N
Sbjct: 869 ASSSGTKT-IAQFFSQSN 885
Score = 67 (28.6 bits), Expect = 6.7e-12, Sum P(2) = 6.7e-12
Identities = 19/69 (27%), Positives = 28/69 (40%)
Query: 448 LDDYKCSLCGTEMPPSFIEERQEHSDFHLAERLQKEESGSDLRILTHRERCVRTQRDHIA 507
L KC CG +P ++ Q H D H A+ L + LR ER Q+ +
Sbjct: 703 LPTIKCDQCGANIPDE-VKSLQTHRDHHFAQELSRT-----LRSTEREERTQSRQKISLK 756
Query: 508 SHRKRKKQK 516
+K +K
Sbjct: 757 PTPPKKSKK 765
>UNIPROTKB|P63985 [details] [associations]
symbol:dinB1 "DNA polymerase IV 1" species:1773
"Mycobacterium tuberculosis" [GO:0005829 "cytosol" evidence=IDA]
[GO:0005886 "plasma membrane" evidence=IDA] HAMAP:MF_01113
InterPro:IPR001126 InterPro:IPR017961 InterPro:IPR017963
InterPro:IPR022880 Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173
GO:GO:0005829 GO:GO:0005886 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0046872 GO:GO:0003684 GO:GO:0006260
GO:GO:0006281 EMBL:BX842577 GO:GO:0003887 PIR:F70760
RefSeq:NP_216053.2 RefSeq:NP_336041.2 RefSeq:YP_006514925.1
ProteinModelPortal:P63985 SMR:P63985
EnsemblBacteria:EBMYCT00000000713 EnsemblBacteria:EBMYCT00000071148
GeneID:13320135 GeneID:886414 GeneID:924358 KEGG:mtc:MT1589
KEGG:mtu:Rv1537 KEGG:mtv:RVBD_1537 PATRIC:18125261
TubercuList:Rv1537 eggNOG:COG0389 HOGENOM:HOG000082707 KO:K02346
OMA:LKKADMS ProtClustDB:PRK03348 Gene3D:3.30.1490.100
InterPro:IPR024728 Pfam:PF11798 SUPFAM:SSF100879 Uniprot:P63985
Length = 468
Score = 193 (73.0 bits), Expect = 4.2e-12, P = 4.2e-12
Identities = 80/319 (25%), Positives = 135/319 (42%)
Query: 8 ARRFGVRAAMPGFIARKLCP-ELIFVPTDFTKYTYYSDLTRKVFCKYD---PNFMAASLD 63
AR +G R+AMP AR+L + +P + Y +R+VF P S D
Sbjct: 49 ARAYGARSAMPMHQARRLIGVTAVVLPP---RGVVYGIASRRVFDTVRGLVPVVEQLSFD 105
Query: 64 EAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF 123
EA+ + ++ E LR V +E GL S G + +AK+ S + KP+G
Sbjct: 106 EAFAEPPQLAGAVAEDVETFCERLRRRVRDETGLIASVGAGSGKQIAKIASGLAKPDGIR 165
Query: 124 VLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTA 183
V+ + + +S LP+R++ GIG V E L + GI T ++ A +T
Sbjct: 166 VVRHAEEQAL--LSGLPVRRLWGIGPVAEEKLHRL-GIETIGQLAALSDAEAANILGATI 222
Query: 184 DFFLS-VGLGLGSTNTPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEX 241
L + G+ + K IS+E TF+V L+ + IAE + ++
Sbjct: 223 GPALHRLARGIDDRPVVERAEAKQISAESTFAVDLTTMEQLHEAIDSIAEHAHQRLLRDG 282
Query: 242 XXXXXXXXXXXXASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS-LRLIGLR--- 297
+ TR+ T+ + + + A LL L + +RL+G+
Sbjct: 283 RGARTITVKLKKSDMSTLTRSATMPYPTTDAGALFTVARRLLPDPLQIGPIRLLGVGFSG 342
Query: 298 VTQFNEDKVRAPSDPTQKT 316
++ ++ + A SD TQ+T
Sbjct: 343 LSDIRQESLFADSDLTQET 361
>CGD|CAL0001748 [details] [associations]
symbol:orf19.4412 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0005819 "spindle" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0000790 "nuclear
chromatin" evidence=IEA] [GO:0005657 "replication fork"
evidence=IEA] [GO:0017125 "deoxycytidyl transferase activity"
evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA] [GO:0070987 "error-free translesion synthesis"
evidence=IEA] [GO:0042276 "error-prone translesion synthesis"
evidence=IEA] InterPro:IPR001126 InterPro:IPR012112
InterPro:IPR017961 InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799
PIRSF:PIRSF036573 PROSITE:PS50173 InterPro:IPR001357 CGD:CAL0001748
Pfam:PF00533 GO:GO:0000287 GO:GO:0003684 GO:GO:0006281
EMBL:AACQ01000179 EMBL:AACQ01000178 SMART:SM00292 SUPFAM:SSF52113
PROSITE:PS50172 GO:GO:0003887 eggNOG:COG0389 Gene3D:3.30.1490.100
SUPFAM:SSF100879 KO:K03515 RefSeq:XP_711860.1 RefSeq:XP_723600.1
ProteinModelPortal:Q59Q77 STRING:Q59Q77 GeneID:3646519
GeneID:3646539 KEGG:cal:CaO19.11890 KEGG:cal:CaO19.4412
Uniprot:Q59Q77
Length = 1113
Score = 195 (73.7 bits), Expect = 1.1e-11, P = 1.1e-11
Identities = 66/228 (28%), Positives = 107/228 (46%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSD--LTRKVFCKYDPNFMAASLDEA 65
AR++GV+ M A KLCP+LI +P +F Y +S + K+ + S+DE
Sbjct: 437 ARKYGVKNGMWLMQATKLCPDLILLPYEFESYEKFSSEFYNYLLTSKFFDSIFPVSIDEV 496
Query: 66 YLDITEVCRERGIS-GIEIAEELRTSVYEEA-GLT-C--SAGVAPNRLLAKVCSDINKPN 120
+D T C G+S + + EL T + ++ LT C S G + N LLAK+ KPN
Sbjct: 497 LVDATSYCHS-GVSDSVSLVNELATRIRKDVFKLTNCPVSVGASTNVLLAKLALRKAKPN 555
Query: 121 GQFVLPNDRMAVMTFISSLPIRKIGGIGK-VTEHILRDVFGINT-CEEMLQ-KGSLLCAV 177
GQF L +D + F+ S+ I+ + G G+ + E + ++ N ++++ L +
Sbjct: 556 GQFYLFDD---IEKFLESIYIKDLPGFGRGILEKLNSEIQSSNPQIKDVVTISKQRLVQL 612
Query: 178 FSHSTADFFLSVGLGLGST------NTPQARF-RKSISSERTFSVTED 218
T G+ T N P+A RKS+S + F + D
Sbjct: 613 LGEKTGTKLFEYARGMDETSIEIDTNNPEAVLGRKSVSVDVNFGIRFD 660
>UNIPROTKB|Q9UNA4 [details] [associations]
symbol:POLI "DNA polymerase iota" species:9606 "Homo
sapiens" [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005622 "intracellular"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0043231 "intracellular
membrane-bounded organelle" evidence=IDA] InterPro:IPR001126
InterPro:IPR017961 InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 GO:GO:0005654 GO:GO:0046872 GO:GO:0003684
GO:GO:0006260 GO:GO:0006281 GO:GO:0003887 eggNOG:COG0389
Gene3D:3.30.1490.100 SUPFAM:SSF100879 EMBL:AY094607 EMBL:AC093462
EMBL:AF140501 EMBL:AL136670 EMBL:BC032662 EMBL:AF245438
IPI:IPI00296840 RefSeq:NP_009126.2 UniGene:Hs.438533 PDB:1T3N
PDB:1ZET PDB:2ALZ PDB:2DPI PDB:2DPJ PDB:2FLL PDB:2FLN PDB:2FLP
PDB:2KHU PDB:2KHW PDB:2KTF PDB:2L0F PDB:2L0G PDB:3EPG PDB:3EPI
PDB:3G6V PDB:3G6X PDB:3G6Y PDB:3GV5 PDB:3GV7 PDB:3GV8 PDB:3H40
PDB:3H4B PDB:3H4D PDB:3NGD PDB:3OSN PDB:3Q8P PDB:3Q8Q PDB:3Q8R
PDB:3Q8S PDB:4EBC PDB:4EBD PDB:4EBE PDB:4EYH PDB:4EYI PDB:4FS1
PDB:4FS2 PDBsum:1T3N PDBsum:1ZET PDBsum:2ALZ PDBsum:2DPI
PDBsum:2DPJ PDBsum:2FLL PDBsum:2FLN PDBsum:2FLP PDBsum:2KHU
PDBsum:2KHW PDBsum:2KTF PDBsum:2L0F PDBsum:2L0G PDBsum:3EPG
PDBsum:3EPI PDBsum:3G6V PDBsum:3G6X PDBsum:3G6Y PDBsum:3GV5
PDBsum:3GV7 PDBsum:3GV8 PDBsum:3H40 PDBsum:3H4B PDBsum:3H4D
PDBsum:3NGD PDBsum:3OSN PDBsum:3Q8P PDBsum:3Q8Q PDBsum:3Q8R
PDBsum:3Q8S PDBsum:4EBC PDBsum:4EBD PDBsum:4EBE PDBsum:4EYH
PDBsum:4EYI PDBsum:4FS1 PDBsum:4FS2 ProteinModelPortal:Q9UNA4
SMR:Q9UNA4 IntAct:Q9UNA4 MINT:MINT-1189678 STRING:Q9UNA4
PhosphoSite:Q9UNA4 DMDM:59798440 PaxDb:Q9UNA4 PRIDE:Q9UNA4
DNASU:11201 Ensembl:ENST00000579534 GeneID:11201 KEGG:hsa:11201
UCSC:uc002lfj.4 CTD:11201 GeneCards:GC18P051731 H-InvDB:HIX0014457
HGNC:HGNC:9182 HPA:HPA012000 MIM:605252 neXtProt:NX_Q9UNA4
PharmGKB:PA33502 HOGENOM:HOG000234325 HOVERGEN:HBG053634
InParanoid:Q9UNA4 KO:K03510 OMA:VFYELPE OrthoDB:EOG46T310
ChEMBL:CHEMBL5391 ChiTaRS:POLI EvolutionaryTrace:Q9UNA4
GenomeRNAi:11201 NextBio:42637 Bgee:Q9UNA4 CleanEx:HS_POLI
Genevestigator:Q9UNA4 GermOnline:ENSG00000101751 Uniprot:Q9UNA4
Length = 740
Score = 152 (58.6 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
Identities = 58/174 (33%), Positives = 87/174 (50%)
Query: 67 LDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP 126
+++ +V R + G +IA E+R ++Y + GLT AGVA N+LLAK+ S + KPN Q VL
Sbjct: 188 INLLDVLHIRLLVGSQIAAEMREAMYNQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLL 247
Query: 127 NDRMAVMTFISSLP-IRKIGGIGKVTEHILRDVFGINTCEEMLQKGS--LLCAVFSHSTA 183
+ + I SL I++I GIG T L + GIN+ + LQ S +L S A
Sbjct: 248 PE--SCQHLIHSLNHIKEIPGIGYKTAKCL-EALGINSVRD-LQTFSPKILEKELGISVA 303
Query: 184 DFFLSVGLGLGSTNTPQARFR--KSISSERTFSVTEDKALLYRKLAEI-AEMLS 234
L G N+P +S S E +F + K+ E+ A +L+
Sbjct: 304 QRIQK--LSFGEDNSPVILSGPPQSFSEEDSFKKCSSEVEAKNKIEELLASLLN 355
Score = 89 (36.4 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
Identities = 21/70 (30%), Positives = 37/70 (52%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVP-TDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAY 66
AR+ GV+ M A++ CP+L+ V D T+Y S ++ ++ P DE +
Sbjct: 95 ARKLGVKKLMNVRDAKEKCPQLVLVNGEDLTRYREMSYKVTELLEEFSPVVERLGFDENF 154
Query: 67 LDITEVCRER 76
+D+TE+ +R
Sbjct: 155 VDLTEMVEKR 164
>ASPGD|ASPL0000012133 [details] [associations]
symbol:AN3909 species:162425 "Emericella nidulans"
[GO:0006281 "DNA repair" evidence=IEA] [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=IEA] [GO:0003684 "damaged DNA
binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005819 "spindle" evidence=IEA] InterPro:IPR001126
InterPro:IPR012112 InterPro:IPR017956 InterPro:IPR017961
InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799 PIRSF:PIRSF036573
PROSITE:PS50173 SMART:SM00384 InterPro:IPR001357 GO:GO:0000287
GO:GO:0003684 GO:GO:0006281 EMBL:BN001302 SMART:SM00292
SUPFAM:SSF52113 PROSITE:PS50172 EMBL:AACD01000064 GO:GO:0003887
eggNOG:COG0389 Gene3D:3.30.1490.100 InterPro:IPR024728 Pfam:PF11798
SUPFAM:SSF100879 InterPro:IPR025527 Pfam:PF14377 KO:K03515
OrthoDB:EOG49PF6V RefSeq:XP_661513.1 ProteinModelPortal:Q5B6C1
STRING:Q5B6C1 EnsemblFungi:CADANIAT00004788 GeneID:2873330
KEGG:ani:AN3909.2 HOGENOM:HOG000216225 OMA:SAEVNWG Uniprot:Q5B6C1
Length = 1139
Score = 202 (76.2 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 68/225 (30%), Positives = 99/225 (44%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR GV+ M A + CP+L +P DF Y S + D + S+DEA +
Sbjct: 386 ARASGVKNGMWMKGALQACPDLRVLPYDFPAYEEASRKFYRAILGIDGLVQSVSIDEALV 445
Query: 68 DITEVCRERGIS---GI-------------EIAEELRTSVYEEAGLTCSAGVAPNRLLAK 111
DIT +C E G S G+ E+AE+LR ++ E G S G+ N L AK
Sbjct: 446 DITTICLEAGGSEGKGVSEGSIYREQAKADEVAEQLRAAIKRETGCAVSVGIGGNILQAK 505
Query: 112 VCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG 171
V KP GQF L D AV+ FI LP++ + G+G L D+ G+ +++
Sbjct: 506 VALRKAKPAGQFQLKPD--AVLDFIGELPVQNLPGVGYSLSAKLEDL-GVKIVKDIRDLS 562
Query: 172 -SLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSV 215
L + T G+ T RKS+S+E + +
Sbjct: 563 REKLSSSLGPKTGAKLADYARGIDRTEVGNEVTRKSVSAEVNWGI 607
Score = 40 (19.1 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 393 EKIHENEVSQLLEGNSLVLR 412
E++H V L++G L L+
Sbjct: 624 EELHRRLVENLMKGQQLTLK 643
>ZFIN|ZDB-GENE-050417-376 [details] [associations]
symbol:poli "polymerase (DNA directed) iota"
species:7955 "Danio rerio" [GO:0003684 "damaged DNA binding"
evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
InterPro:IPR001126 InterPro:IPR017961 InterPro:IPR017963
Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173 ZFIN:ZDB-GENE-050417-376
GO:GO:0003684 GO:GO:0006281 GO:GO:0003887 Gene3D:3.30.1490.100
SUPFAM:SSF100879 CTD:11201 HOVERGEN:HBG053634 KO:K03510
EMBL:BC092781 IPI:IPI00481247 RefSeq:NP_001017834.1
UniGene:Dr.78857 ProteinModelPortal:Q568P0 SMR:Q568P0 GeneID:550532
KEGG:dre:550532 InParanoid:Q568P0 NextBio:20879773 Uniprot:Q568P0
Length = 710
Score = 153 (58.9 bits), Expect = 2.1e-11, Sum P(2) = 2.1e-11
Identities = 49/162 (30%), Positives = 79/162 (48%)
Query: 80 GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTFISS 138
G IA E+R +++ GLT AGVA N+LLAK+ S KPN Q +LP+ +M+ ++
Sbjct: 181 GSVIAAEMRQAIFSTLGLTGCAGVASNKLLAKLVSGSFKPNQQTTLLPHSNAELMSSLTG 240
Query: 139 LPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNT 198
L K+ GIG T L+ + +N + L S L F A ++ G+ +
Sbjct: 241 LI--KVPGIGYKTREKLKALGLVNVRDLQLYPLSDLVKEFGEMNAKRVQNLACGIDDSPV 298
Query: 199 PQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKE 240
A +S+S E +F + +K+ E+ L+ M K+
Sbjct: 299 TPAGPPQSLSDEDSFKKMSTLEEVLKKIEELLINLTERMHKD 340
Score = 85 (35.0 bits), Expect = 2.1e-11, Sum P(2) = 2.1e-11
Identities = 22/70 (31%), Positives = 32/70 (45%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVP-TDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAY 66
AR GV M A + CP+L+ V D T Y S ++ Y P DE +
Sbjct: 79 ARELGVNKLMSVTDAVEKCPQLVLVKGEDLTHYREMSYKVTELLMSYCPLVERLGFDENF 138
Query: 67 LDITEVCRER 76
+D+TE+ +R
Sbjct: 139 MDVTEMVEKR 148
>RGD|1305212 [details] [associations]
symbol:Poli "polymerase (DNA directed), iota" species:10116
"Rattus norvegicus" [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA;ISO] [GO:0005622 "intracellular" evidence=ISO]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0008152 "metabolic process" evidence=ISO]
[GO:0043231 "intracellular membrane-bounded organelle"
evidence=ISO] InterPro:IPR001126 InterPro:IPR017961
InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173
RGD:1305212 GO:GO:0005634 GO:GO:0003684 GO:GO:0006281 EMBL:CH473971
GO:GO:0003887 Gene3D:3.30.1490.100 InterPro:IPR024728 Pfam:PF11798
SUPFAM:SSF100879 GeneTree:ENSGT00530000062942 CTD:11201 KO:K03510
OrthoDB:EOG46T310 IPI:IPI00870858 RefSeq:NP_001099607.1
UniGene:Rn.136855 Ensembl:ENSRNOT00000016189 GeneID:291526
KEGG:rno:291526 NextBio:632673 Uniprot:D4A8I8
Length = 732
Score = 146 (56.5 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 52/157 (33%), Positives = 77/157 (49%)
Query: 80 GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSL 139
G +IA E+R +++ + GLT AGVAPN+LLAK+ S + KPN Q VL + + I SL
Sbjct: 196 GSQIAAEMREAMHNQLGLTGCAGVAPNKLLAKLVSGVFKPNQQTVLLPE--SCQHLIHSL 253
Query: 140 P-IRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL--LCAVFSHSTADFFLSVGLGLGST 196
I+++ GIG T L +V GIN+ + LQ + L S A + G +
Sbjct: 254 NHIKEMPGIGYKTAKRL-EVLGINSVHD-LQTFPIKTLEKELGISVAQRIRKLSFGEDKS 311
Query: 197 NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEML 233
+ +S S E TF + K+ E+ L
Sbjct: 312 PVTPSGPPQSFSEEDTFKKCSSEVEAKTKIEELLSSL 348
Score = 86 (35.3 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 20/70 (28%), Positives = 37/70 (52%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVP-TDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAY 66
AR+ GV+ M A++ CP+L+ V D ++Y S ++ ++ P DE +
Sbjct: 90 ARKLGVKKLMNVRDAKEKCPQLVLVNGEDLSRYREMSYKVTELLEEFSPAVERLGFDENF 149
Query: 67 LDITEVCRER 76
+D+TE+ +R
Sbjct: 150 VDLTEMVEKR 159
>UNIPROTKB|J3KSW2 [details] [associations]
symbol:POLI "DNA polymerase iota" species:9606 "Homo
sapiens" [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=IEA] InterPro:IPR001126
InterPro:IPR017961 InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 GO:GO:0003684 GO:GO:0006281 GO:GO:0003887
Gene3D:3.30.1490.100 SUPFAM:SSF100879 EMBL:AC093462 HGNC:HGNC:9182
ChiTaRS:POLI ProteinModelPortal:J3KSW2 Ensembl:ENST00000579434
Uniprot:J3KSW2
Length = 637
Score = 152 (58.6 bits), Expect = 2.7e-10, Sum P(2) = 2.7e-10
Identities = 58/174 (33%), Positives = 87/174 (50%)
Query: 67 LDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP 126
+++ +V R + G +IA E+R ++Y + GLT AGVA N+LLAK+ S + KPN Q VL
Sbjct: 85 INLLDVLHIRLLVGSQIAAEMREAMYNQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLL 144
Query: 127 NDRMAVMTFISSLP-IRKIGGIGKVTEHILRDVFGINTCEEMLQKGS--LLCAVFSHSTA 183
+ + I SL I++I GIG T L + GIN+ + LQ S +L S A
Sbjct: 145 PE--SCQHLIHSLNHIKEIPGIGYKTAKCL-EALGINSVRD-LQTFSPKILEKELGISVA 200
Query: 184 DFFLSVGLGLGSTNTPQARFR--KSISSERTFSVTEDKALLYRKLAEI-AEMLS 234
L G N+P +S S E +F + K+ E+ A +L+
Sbjct: 201 QRIQK--LSFGEDNSPVILSGPPQSFSEEDSFKKCSSEVEAKNKIEELLASLLN 252
Score = 74 (31.1 bits), Expect = 2.7e-10, Sum P(2) = 2.7e-10
Identities = 16/56 (28%), Positives = 30/56 (53%)
Query: 22 ARKLCPELIFVP-TDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 76
A++ CP+L+ V D T+Y S ++ ++ P DE ++D+TE+ +R
Sbjct: 6 AKEKCPQLVLVNGEDLTRYREMSYKVTELLEEFSPVVERLGFDENFVDLTEMVEKR 61
>FB|FBgn0037554 [details] [associations]
symbol:DNApol-iota "DNApol-iota" species:7227 "Drosophila
melanogaster" [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IMP;IDA;NAS] [GO:0019985 "translesion synthesis"
evidence=ISS;NAS;IDA] [GO:0003684 "damaged DNA binding"
evidence=IEA] InterPro:IPR001126 InterPro:IPR017961
InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173
EMBL:AE014297 GO:GO:0003684 GO:GO:0003887 GO:GO:0019985
eggNOG:COG0389 Gene3D:3.30.1490.100 SUPFAM:SSF100879 HSSP:P96022
GeneTree:ENSGT00530000062942 KO:K03510 EMBL:AY051762 EMBL:AB049434
RefSeq:NP_649772.1 RefSeq:NP_731214.1 UniGene:Dm.9926 SMR:Q9VHV1
IntAct:Q9VHV1 MINT:MINT-308720 EnsemblMetazoa:FBtr0081797
EnsemblMetazoa:FBtr0081798 GeneID:40965 KEGG:dme:Dmel_CG7602
UCSC:CG7602-RA CTD:40965 FlyBase:FBgn0037554 InParanoid:Q9VHV1
OMA:CCAGIAY OrthoDB:EOG42RBPH GenomeRNAi:40965 NextBio:821498
Uniprot:Q9VHV1
Length = 737
Score = 144 (55.7 bits), Expect = 3.4e-09, Sum P(3) = 3.4e-09
Identities = 47/170 (27%), Positives = 85/170 (50%)
Query: 73 CRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAV 132
C +R G IA+E+R + G+TC AG+A N+LLAK+ ++PN Q VL +
Sbjct: 157 CAQRLAIGTRIAQEIREELKLRLGITCCAGIAYNKLLAKLVGSSHEPNQQTVLVSTYAE- 215
Query: 133 MTFISSL-PIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVG 190
F+ L ++++ GIG+ T+ +L + G+++ E++ Q ++ F TA +
Sbjct: 216 -QFMRELGDLKRVTGIGQKTQCLLLEA-GMSSVEQLQQCDMDVMRKKFGFETATRLRDLA 273
Query: 191 LGLGSTNTPQARFRKSISSE---RTFSVTEDKALLYRKLAE-IAEMLSAD 236
G ++ + K+I E + SV D +R L + + E ++ D
Sbjct: 274 FGRDTSLVRPSGKPKTIGMEDACKPISVRTDVEERFRMLLKRLVEQVAED 323
Score = 71 (30.1 bits), Expect = 3.4e-09, Sum P(3) = 3.4e-09
Identities = 20/70 (28%), Positives = 30/70 (42%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVP-TDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAY 66
AR GV M A+++CP+L+ V D Y S + Y P DE +
Sbjct: 57 ARAKGVTKLMLIAEAQRICPDLVLVNGEDLAPYRQMSQRIFDLLLNYTPLVEKLGFDENF 116
Query: 67 LDITEVCRER 76
+D+T + R
Sbjct: 117 MDVTALVELR 126
Score = 44 (20.5 bits), Expect = 3.4e-09, Sum P(3) = 3.4e-09
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 288 PVSLRLIGLRVTQFNEDKVRAPS 310
P ++ L+GL ++F E KV + S
Sbjct: 399 PFNITLLGLAFSKFQERKVGSSS 421
>POMBASE|SPBC1347.01c [details] [associations]
symbol:rev1 "deoxycytidyl transferase Rev1 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000287 "magnesium ion
binding" evidence=IEA] [GO:0003684 "damaged DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005739 "mitochondrion" evidence=ISO]
[GO:0005819 "spindle" evidence=IDA] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0006281 "DNA repair" evidence=ISO] [GO:0017125
"deoxycytidyl transferase activity" evidence=ISO] [GO:0043504
"mitochondrial DNA repair" evidence=IC] [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=ISO] InterPro:IPR001126
InterPro:IPR012112 InterPro:IPR017961 InterPro:IPR017963
Pfam:PF00817 Pfam:PF11799 PIRSF:PIRSF036573 PROSITE:PS50173
InterPro:IPR001357 PomBase:SPBC1347.01c Pfam:PF00533 GO:GO:0005739
GO:GO:0005730 GO:GO:0005819 GO:GO:0000287 GO:GO:0003684
GO:GO:0006260 EMBL:CU329671 GenomeReviews:CU329671_GR SMART:SM00292
SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0003887 GO:GO:0043504
eggNOG:COG0389 Gene3D:3.30.1490.100 SUPFAM:SSF100879 GO:GO:0017125
KO:K03515 RefSeq:NP_596693.2 ProteinModelPortal:O94623
IntAct:O94623 STRING:O94623 EnsemblFungi:SPBC1347.01c.1
GeneID:2539723 KEGG:spo:SPBC1347.01c OMA:FHIDFDC OrthoDB:EOG49PF6V
NextBio:20800875 Uniprot:O94623
Length = 935
Score = 168 (64.2 bits), Expect = 7.3e-09, P = 7.3e-09
Identities = 57/211 (27%), Positives = 97/211 (45%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAA-SLDEAY 66
AR+FG++ M A+ LCP L V DF Y S + +++ S+DEA
Sbjct: 322 ARKFGIKNGMYVGTAKNLCPSLRVVDYDFGAYESVSREFYTILVNTLHDYIKVISIDEAL 381
Query: 67 LDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP 126
LDIT EIAE +R+ V E+ S G+ PN LLA++ KP+ + L
Sbjct: 382 LDITSSVSSFQ-DCFEIAESIRSQVREKTNCEVSVGIGPNVLLARLALRKAKPHNVYSLS 440
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTAD 184
+ V +S L ++ + G+G L +++G+ T ++ ++K +L F +
Sbjct: 441 IEN--VFDVLSPLSVQDLPGVGSSQAQKLFNLYGVRTIGQLQRIEKFNLQ-ETFGVNYGL 497
Query: 185 FFLSVGLGLGSTNTPQARFRKSISSERTFSV 215
++ G+ + R+SIS + + V
Sbjct: 498 HLYNISRGIDTDIINNETPRRSISVDVNWGV 528
>WB|WBGene00014066 [details] [associations]
symbol:rev-1 species:6239 "Caenorhabditis elegans"
[GO:0003684 "damaged DNA binding" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0006281
"DNA repair" evidence=IEA] [GO:0000287 "magnesium ion binding"
evidence=IEA] [GO:0016779 "nucleotidyltransferase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0006974 "response to DNA damage
stimulus" evidence=IMP] [GO:0006898 "receptor-mediated endocytosis"
evidence=IMP] InterPro:IPR001126 InterPro:IPR012112
InterPro:IPR017961 InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799
PIRSF:PIRSF036573 PROSITE:PS50173 InterPro:IPR001357 GO:GO:0009792
GO:GO:0006898 GO:GO:0040010 GO:GO:0000287 GO:GO:0003684
GO:GO:0006281 GO:GO:0006974 SMART:SM00292 SUPFAM:SSF52113
PROSITE:PS50172 GO:GO:0003887 eggNOG:COG0389 Gene3D:3.30.1490.100
SUPFAM:SSF100879 GeneTree:ENSGT00530000062942 EMBL:Z46812 KO:K03515
PIR:T27970 RefSeq:NP_495663.1 ProteinModelPortal:Q09615 SMR:Q09615
IntAct:Q09615 MINT:MINT-227346 STRING:Q09615 EnsemblMetazoa:ZK675.2
GeneID:174275 KEGG:cel:CELE_ZK675.2 UCSC:ZK675.2 CTD:174275
WormBase:ZK675.2 HOGENOM:HOG000016674 InParanoid:Q09615 OMA:DWITESI
NextBio:883331 Uniprot:Q09615
Length = 1027
Score = 168 (64.2 bits), Expect = 8.3e-09, P = 8.3e-09
Identities = 60/234 (25%), Positives = 100/234 (42%)
Query: 7 SARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAY 66
+AR GV+ M A + CP+L +P F Y S ++ Y A S DE Y
Sbjct: 487 AARDCGVKNGMLVRDALQKCPQLTLLPYQFEDYVQVSRKIYEILASYTLEVRAVSCDEMY 546
Query: 67 LDITEVCRERGISGIEI-AEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL 125
++++ C + I+ I AE +R + E+ S G+ LLA++ + KP+G F +
Sbjct: 547 INMSSFCEKYEINDPTILAEHIRKVIREKTQCPASVGIGSTSLLARLATRHAKPDGVFWV 606
Query: 126 PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFG-INTCEEM-LQKGSLLCAVFSHSTA 183
+ FIS ++ + G G + L FG I C E+ L+ L VF A
Sbjct: 607 NAHKKN--EFISEEKVKDLPGFGYEMMNRLTSFFGDITKCRELQLKTERELVPVFGPKLA 664
Query: 184 DFFLSVGLGLGSTNTP--QARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSA 235
L G+ RKS+S + + + + K E+ ++++A
Sbjct: 665 SKILRQCRGIEEDPDDFWATHVRKSVSCDINYGIR------FTKRGEVIQLMTA 712
>UNIPROTKB|F1RRJ6 [details] [associations]
symbol:POLH "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0010225 "response to UV-C" evidence=IEA] [GO:0006301
"postreplication repair" evidence=IEA] [GO:0006290 "pyrimidine
dimer repair" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=IEA] [GO:0000731 "DNA synthesis
involved in DNA repair" evidence=IEA] [GO:0003684 "damaged DNA
binding" evidence=IEA] InterPro:IPR001126 InterPro:IPR017961
InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173
GO:GO:0005634 GO:GO:0005737 GO:GO:0003684 GO:GO:0010225
GO:GO:0000731 GO:GO:0006301 GO:GO:0003887 GO:GO:0006290
Gene3D:3.30.1490.100 SUPFAM:SSF100879 KO:K03509 CTD:5429
OMA:SPPLTML InterPro:IPR017061 PIRSF:PIRSF036603
GeneTree:ENSGT00530000062942 EMBL:CR974460 RefSeq:XP_003356678.1
UniGene:Ssc.83954 Ensembl:ENSSSCT00000001879 GeneID:100153104
KEGG:ssc:100153104 Uniprot:F1RRJ6
Length = 698
Score = 133 (51.9 bits), Expect = 1.4e-08, Sum P(3) = 1.4e-08
Identities = 45/166 (27%), Positives = 82/166 (49%)
Query: 80 GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSL 139
G I EE+R ++ + GL CSAG++ N++LAK+ ++KPN Q ++ +V S +
Sbjct: 193 GAVIVEEMRAAIERQTGLQCSAGISHNKVLAKLACALHKPNRQTLVSLG--SVPQVFSQM 250
Query: 140 PIRKIGGIG-KVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHSTADFFLSVGLGLGSTN 197
PI K+ +G K+ I+ ++ GI E+ Q S L + F + ++ G+
Sbjct: 251 PISKVRHLGGKLGASII-EILGIEYMGELTQFTESQLQSHFGEKNGSWLYAMCRGIEHEP 309
Query: 198 TPQARFRKSISSERTFS-----VTEDKALLYR-KLA-EIAEMLSAD 236
+ K++ + F VT ++ + +LA E+ E L+ D
Sbjct: 310 VRPRQVTKTLGCGKNFPGKTALVTREQVQWWLLQLAQELEERLTKD 355
Score = 112 (44.5 bits), Expect = 2.5e-06, Sum P(3) = 2.5e-06
Identities = 36/116 (31%), Positives = 55/116 (47%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPT-------DFTKYTYYSDLTRKVFCKYDPNFMAA 60
AR FGV +M A+KLCP+L+ + TKY S +V ++ A
Sbjct: 54 ARAFGVTKSMWADDAKKLCPDLLLAQVLESRGKANLTKYREASAEVMEVMSRF-AMIERA 112
Query: 61 SLDEAYLDITEVCRER--GISGIEIAEELRTSVYEEA---GLTCSAGVAPNRLLAK 111
S+DEA++D+T RER + G ++ +L + Y E GLT + G + K
Sbjct: 113 SIDEAFVDLTSAVRERLQKLQGQPVSADLLPTTYIEGFPQGLTTAEGTVEKEEMRK 168
Score = 77 (32.2 bits), Expect = 1.4e-08, Sum P(3) = 1.4e-08
Identities = 21/70 (30%), Positives = 31/70 (44%)
Query: 449 DDYKCSLCGTEMPPSFIEERQEHSDFHLAERLQKE----ESGSDLRILTHRERCVRTQRD 504
D C CG+ +P + E EHSD+H A LQK S + + + R +
Sbjct: 616 DQVLCEKCGSLVP---VWETPEHSDYHFALELQKSFLQPHSSTSQAVPARSPQSKRNPKS 672
Query: 505 HIASHRKRKK 514
+AS KR +
Sbjct: 673 PLASSHKRPR 682
Score = 43 (20.2 bits), Expect = 1.4e-08, Sum P(3) = 1.4e-08
Identities = 16/69 (23%), Positives = 27/69 (39%)
Query: 310 SDPTQKTLTNFMTSGHASKKIVGDQNSL---GSDINDDCLIDDKETSVSLDVSETNNYEF 366
+ P++ +L F TS + Q +L +ND + + S Y
Sbjct: 509 NSPSKPSLP-FQTSSTTGSEPFFKQKTLLLKQKQLNDPSVFFPPQKPQSSPKELPTEYPD 567
Query: 367 GDPVCDNSL 375
G P C+N+L
Sbjct: 568 GGPACENAL 576
>ASPGD|ASPL0000072145 [details] [associations]
symbol:AN4678 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0003684 "damaged DNA
binding" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA] [GO:0019985 "translesion synthesis"
evidence=IEA] [GO:0034087 "establishment of mitotic sister
chromatid cohesion" evidence=IEA] InterPro:IPR001126
InterPro:IPR017961 InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 GO:GO:0003684 GO:GO:0006281 EMBL:BN001303
EMBL:AACD01000080 GO:GO:0003887 eggNOG:COG0389 Gene3D:3.30.1490.100
SUPFAM:SSF100879 KO:K03509 OrthoDB:EOG4M0J8V InterPro:IPR017061
PIRSF:PIRSF036603 RefSeq:XP_662282.1 ProteinModelPortal:Q5B452
STRING:Q5B452 EnsemblFungi:CADANIAT00005754 GeneID:2872476
KEGG:ani:AN4678.2 HOGENOM:HOG000173699 OMA:DDPDWDD Uniprot:Q5B452
Length = 674
Score = 153 (58.9 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 60/206 (29%), Positives = 98/206 (47%)
Query: 80 GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSL 139
G EI +RT+V+ TCSAG+A N+++AK+ S NKPN Q V+ N A+ F+S
Sbjct: 263 GAEIVRSVRTAVWNSLSYTCSAGIAKNKMMAKLGSATNKPNKQTVVRN--RAIQNFLSGF 320
Query: 140 PIRKIGGIG-KVTEHILRDVFGINTCEEMLQKGSL--LCAVFSHSTADFFLSVGLGLGST 196
KI +G K+ + + +FG E+L K SL A + TA + + G +
Sbjct: 321 KFTKIRMLGGKLGDQVTA-MFGTEQISELL-KVSLEQFRAKLNDDTAVWLYGIIRGEDKS 378
Query: 197 NT-PQARFRKSISSERTF--SV-TEDKA--LLYRKLAEIAEMLSADMQKEXXXXXXXXXX 250
P+ + KS+ S ++F S+ T D+A L+ A+I L + E
Sbjct: 379 EVNPRTQI-KSMLSAKSFRPSINTLDQADKWLHIFAADIYGRLVEEGVLEHKRRPKTIAL 437
Query: 251 XXXASFEVRTRAVTLQKYISSSEDIL 276
+V++R + + + ED+L
Sbjct: 438 HHRQGAQVKSRQLPIPGSATIDEDLL 463
Score = 56 (24.8 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 16/60 (26%), Positives = 29/60 (48%)
Query: 428 DITPDNKV---GTSSNQKDQFIWLDDYKCSLCGTEMPPSFIEERQEHSDFHLAERLQKEE 484
DI DN +S+ + + + ++C CG + E EH+D+H A+ L+ +E
Sbjct: 575 DINVDNAQLDDHVASDGEIEQVHSKSFRCPRCGRYINCG---EEDEHNDWHFAKDLETQE 631
>UNIPROTKB|J3QR36 [details] [associations]
symbol:POLI "DNA polymerase iota" species:9606 "Homo
sapiens" [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] InterPro:IPR001126
InterPro:IPR017963 Pfam:PF00817 PROSITE:PS50173 GO:GO:0003684
GO:GO:0006281 GO:GO:0003887 EMBL:AC093462 HGNC:HGNC:9182
ChiTaRS:POLI Ensembl:ENST00000577612 Uniprot:J3QR36
Length = 195
Score = 100 (40.3 bits), Expect = 5.5e-08, Sum P(2) = 5.5e-08
Identities = 21/50 (42%), Positives = 34/50 (68%)
Query: 67 LDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDI 116
+++ +V R + G +IA E+R ++Y + GLT AGVA N+LLAK+ S +
Sbjct: 145 INLLDVLHIRLLVGSQIAAEMREAMYNQLGLTGCAGVASNKLLAKLVSGV 194
Score = 89 (36.4 bits), Expect = 5.5e-08, Sum P(2) = 5.5e-08
Identities = 21/70 (30%), Positives = 37/70 (52%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVP-TDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAY 66
AR+ GV+ M A++ CP+L+ V D T+Y S ++ ++ P DE +
Sbjct: 52 ARKLGVKKLMNVRDAKEKCPQLVLVNGEDLTRYREMSYKVTELLEEFSPVVERLGFDENF 111
Query: 67 LDITEVCRER 76
+D+TE+ +R
Sbjct: 112 VDLTEMVEKR 121
>UNIPROTKB|G5EH81 [details] [associations]
symbol:MGCH7_ch7g688 "Sister chromatid cohesion protein
Eso1" species:242507 "Magnaporthe oryzae 70-15" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR001126 InterPro:IPR017961
InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173
GO:GO:0003684 GO:GO:0006281 EMBL:CM000230 EMBL:CM001237
GO:GO:0003887 Gene3D:3.30.1490.100 SUPFAM:SSF100879 KO:K03509
InterPro:IPR017061 PIRSF:PIRSF036603 RefSeq:XP_003720794.1
EnsemblFungi:MGG_02924T0 GeneID:2682477 KEGG:mgr:MGG_02924
Uniprot:G5EH81
Length = 668
Score = 132 (51.5 bits), Expect = 1.2e-07, Sum P(3) = 1.2e-07
Identities = 40/135 (29%), Positives = 68/135 (50%)
Query: 82 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 141
EI ++R +++ TCSAGVA N+LL+K+ S KPN Q V+ AV F+S
Sbjct: 248 EITRDIRQTIFTRLKYTCSAGVAGNKLLSKLGSAHKKPNQQTVIRG--RAVRKFLSDFKF 305
Query: 142 RKIGGIG-KVTEHILRDVFGINTCEEMLQK--GSLLCAVFSHSTADFFLSVGLGLGSTNT 198
KI +G K+ + ++ FG + ++L+ L + STA + + G+ ++
Sbjct: 306 TKIRNLGGKLGDQVVA-AFGTESVSDLLEVPLDQLKLRLGEESTALWVYNTIRGIDNSEV 364
Query: 199 PQARFRKSISSERTF 213
KS+ S ++F
Sbjct: 365 NSRTQIKSMLSAKSF 379
Score = 65 (27.9 bits), Expect = 1.2e-07, Sum P(3) = 1.2e-07
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 466 EERQEHSDFHLAERLQKEESGSDLRILTHRE 496
EE Q+H D+HLA+ LQ EE T R+
Sbjct: 603 EELQDHLDWHLAKDLQDEEERGASAFATRRQ 633
Score = 46 (21.3 bits), Expect = 1.2e-07, Sum P(3) = 1.2e-07
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 8 ARRFGVRAAMPGFIARKLCPEL 29
AR+FG+ A KLCPEL
Sbjct: 90 ARKFGISRHCAIDDALKLCPEL 111
>UNIPROTKB|F1MHR0 [details] [associations]
symbol:POLI "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0006281
"DNA repair" evidence=IEA] [GO:0003684 "damaged DNA binding"
evidence=IEA] InterPro:IPR001126 InterPro:IPR017961
InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173
GO:GO:0005634 GO:GO:0003684 GO:GO:0006281 GO:GO:0003887
Gene3D:3.30.1490.100 SUPFAM:SSF100879 GeneTree:ENSGT00530000062942
OMA:VFYELPE EMBL:DAAA02057088 IPI:IPI00687719
Ensembl:ENSBTAT00000012034 Uniprot:F1MHR0
Length = 701
Score = 160 (61.4 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 66/250 (26%), Positives = 118/250 (47%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVP-TDFTKY---TY-YSDLTRKVFCKYDPNFMAASL 62
AR+ GV+ M A++ CP+L+ V D T+Y +Y +++ K + + ++A
Sbjct: 82 ARKLGVKKLMSVRDAKEKCPQLVLVNGEDLTRYREMSYKVTEMVEKRLEQLQSDELSALT 141
Query: 63 DEAYLDITEVCRERG------ISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDI 116
++ + R + G +I E+R ++Y++ GLT AGVA N+LLAK+ S +
Sbjct: 142 VSGHVYNNQPVNPRDTLHIRLLVGSQIVAEMREAMYQQLGLTGCAGVASNKLLAKLVSGV 201
Query: 117 NKPNGQFVL-PNDRMAVMTFISSLPIRKIGGIG-KVTEHILRDVFGINTCEEMLQKGS-L 173
KPN Q VL P ++ ++ I+++ GIG K T+ + + GI++ ++ S +
Sbjct: 202 FKPNQQTVLLPESSQELIHSLNH--IKEMPGIGYKTTKRL--EALGISSVRDLQTFPSKV 257
Query: 174 LCAVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTF----SVTEDKALLYRKLAEI 229
L S A + G + + +S S E +F S E K + LA +
Sbjct: 258 LEKELGISVAQRIQKLSFGEDDSPVTPSGPPQSFSEEDSFKKCSSEVEAKTKIEELLASL 317
Query: 230 AEMLSADMQK 239
+ D +K
Sbjct: 318 LNRVCQDGRK 327
Score = 38 (18.4 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 14/49 (28%), Positives = 20/49 (40%)
Query: 472 SDFHLAERLQKEESGSDLRILTHRERCVRTQRDHIASHRKRKKQKLFEK 520
S FH LQ E+ S R ++ V T H R+++ EK
Sbjct: 616 SVFHSFPNLQSEQLLSKNRTTDSHKQPVATVSRHEGLKENREQESPDEK 664
>WB|WBGene00018721 [details] [associations]
symbol:polh-1 species:6239 "Caenorhabditis elegans"
[GO:0003684 "damaged DNA binding" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0006281
"DNA repair" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR001126 InterPro:IPR017961 InterPro:IPR017963
Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173 GO:GO:0005634
GO:GO:0003684 GO:GO:0006281 GO:GO:0003887 Gene3D:3.30.1490.100
SUPFAM:SSF100879 KO:K03509 InterPro:IPR017061 PIRSF:PIRSF036603
GeneTree:ENSGT00530000062942 EMBL:FO080224 EMBL:AB244413 PIR:A88395
RefSeq:NP_497480.2 UniGene:Cel.10441 ProteinModelPortal:G5EFY1
SMR:G5EFY1 EnsemblMetazoa:F53A3.2 GeneID:175337
KEGG:cel:CELE_F53A3.2 CTD:175337 WormBase:F53A3.2 OMA:GVGNNKM
NextBio:887718 Uniprot:G5EFY1
Length = 584
Score = 112 (44.5 bits), Expect = 3.3e-07, Sum P(3) = 3.3e-07
Identities = 46/182 (25%), Positives = 80/182 (43%)
Query: 66 YLDITEVCRERG---ISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQ 122
Y++ C E I+ + + E++R ++EE CSAGV N+++AK+ +KP Q
Sbjct: 176 YIENARNCTENLLLLIAAVTV-EQIRQQIHEETQFFCSAGVGNNKMMAKLVCARHKPRQQ 234
Query: 123 FVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHS 181
++P V + PI + G G + ++++ I E+L+ S L F +
Sbjct: 235 TLIP--WFYVREILRLTPIGDVRGFGGKMGNRIQEMLNITLMGELLEVDISQLIETFPNQ 292
Query: 182 TADFFLSVGLGLGSTNTPQARFRKSISSERTF-------SVTEDKALLYRKLAEIAEMLS 234
++ SV G + SI+ + F SV E K L E+A+ L+
Sbjct: 293 H-EYLRSVAEGHCDEPVRPRKESSSIAVSKNFPGKLSIRSVLELKKWLDGLTKELAKRLA 351
Query: 235 AD 236
D
Sbjct: 352 TD 353
Score = 71 (30.1 bits), Expect = 3.3e-07, Sum P(3) = 3.3e-07
Identities = 25/80 (31%), Positives = 38/80 (47%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIF--VP----TDFTKYTYYSDLTRKVFC---KYDPNFM 58
AR FGV+ M A+ CP++ VP D Y D + +VF YD +
Sbjct: 51 ARPFGVKRGMTVAEAKLKCPQISICHVPIGEYVDKADIQKYRDASAEVFRVLNNYDSQII 110
Query: 59 A--ASLDEAYLDITEVCRER 76
AS+DEA+LD++ ++
Sbjct: 111 IEKASVDEAFLDLSAYTNQK 130
Score = 55 (24.4 bits), Expect = 3.3e-07, Sum P(3) = 3.3e-07
Identities = 18/74 (24%), Positives = 32/74 (43%)
Query: 443 DQFIWLDDYKCS-LCGTEMPPSFIEERQEHSDFHLAERLQKEESGSDLRILTHRERCVRT 501
D +I++D K S + +PP + Q A L+ + GS R H + +
Sbjct: 510 DNWIFVDGKKFSKMAWRHLPPDIKKHYQHRIALEEARALKSKTGGSRKRAGAHTDNAQKP 569
Query: 502 QRDH-IASHRKRKK 514
++ + S K+KK
Sbjct: 570 KKPKSLESFFKKKK 583
>UNIPROTKB|J3KRG0 [details] [associations]
symbol:POLI "DNA polymerase iota" species:9606 "Homo
sapiens" [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=IEA] InterPro:IPR001126
InterPro:IPR017963 Pfam:PF00817 PROSITE:PS50173 GO:GO:0003684
GO:GO:0006281 GO:GO:0003887 EMBL:AC093462 HGNC:HGNC:9182
ChiTaRS:POLI Ensembl:ENST00000580880 Uniprot:J3KRG0
Length = 145
Score = 124 (48.7 bits), Expect = 5.7e-07, P = 5.7e-07
Identities = 27/59 (45%), Positives = 40/59 (67%)
Query: 67 LDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL 125
+++ +V R + G +IA E+R ++Y + GLT AGVA N+LLAK+ S + KPN Q VL
Sbjct: 85 INLLDVLHIRLLVGSQIAAEMREAMYNQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVL 143
>UNIPROTKB|F1NCM3 [details] [associations]
symbol:POLH "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003684 "damaged DNA binding" evidence=IEA] [GO:0000731
"DNA synthesis involved in DNA repair" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006290 "pyrimidine dimer repair" evidence=IEA] [GO:0006301
"postreplication repair" evidence=IEA] [GO:0010225 "response to
UV-C" evidence=IEA] InterPro:IPR001126 InterPro:IPR017961
InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173
GO:GO:0005634 GO:GO:0005737 GO:GO:0003684 GO:GO:0010225
GO:GO:0000731 GO:GO:0006301 GO:GO:0003887 GO:GO:0006290
Gene3D:3.30.1490.100 SUPFAM:SSF100879 InterPro:IPR017061
PIRSF:PIRSF036603 GeneTree:ENSGT00530000062942 EMBL:AADN02011866
EMBL:AADN02011865 IPI:IPI00818532 Ensembl:ENSGALT00000038044
ArrayExpress:F1NCM3 Uniprot:F1NCM3
Length = 657
Score = 144 (55.7 bits), Expect = 8.3e-07, Sum P(2) = 8.3e-07
Identities = 37/135 (27%), Positives = 61/135 (45%)
Query: 80 GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSL 139
G I EE+R +V + G CSAG++ N++LAK+ +NKPN Q L + R F S +
Sbjct: 184 GAVIVEEIRVAVEKATGFRCSAGISHNKMLAKLACGLNKPNRQ-TLVSSRSVPQLF-SQM 241
Query: 140 PIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFFLSVGLGLGSTNT 198
P+ I +G + D+ G+ E+ + + L F T + + G+
Sbjct: 242 PVSSIRNLGGKLGVAITDILGVEYIGEVTKFSEMELQTHFGDKTGSWLYDLCRGIDDEPV 301
Query: 199 PQARFRKSISSERTF 213
+SI + F
Sbjct: 302 KNRHLPQSIGCSKNF 316
Score = 49 (22.3 bits), Expect = 8.3e-07, Sum P(2) = 8.3e-07
Identities = 12/34 (35%), Positives = 15/34 (44%)
Query: 449 DDYKCSLCGTEMPPSFIEERQEHSDFHLAERLQK 482
D C CG + E EH D+H A LQ+
Sbjct: 596 DQQCCEKCGQYV---LAWELPEHMDYHFAVELQR 626
>UNIPROTKB|F1NAG6 [details] [associations]
symbol:POLH "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003684 "damaged DNA binding" evidence=IEA] [GO:0000731
"DNA synthesis involved in DNA repair" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006290 "pyrimidine dimer repair" evidence=IEA] [GO:0006301
"postreplication repair" evidence=IEA] [GO:0010225 "response to
UV-C" evidence=IEA] InterPro:IPR001126 InterPro:IPR017961
InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173
GO:GO:0005634 GO:GO:0005737 GO:GO:0003684 GO:GO:0010225
GO:GO:0000731 GO:GO:0006301 GO:GO:0003887 GO:GO:0006290
Gene3D:3.30.1490.100 SUPFAM:SSF100879 OMA:SPPLTML
InterPro:IPR017061 PIRSF:PIRSF036603 GeneTree:ENSGT00530000062942
EMBL:AADN02011866 EMBL:AADN02011865 IPI:IPI00596429
Ensembl:ENSGALT00000016798 ArrayExpress:F1NAG6 Uniprot:F1NAG6
Length = 686
Score = 144 (55.7 bits), Expect = 9.4e-07, Sum P(2) = 9.4e-07
Identities = 37/135 (27%), Positives = 61/135 (45%)
Query: 80 GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSL 139
G I EE+R +V + G CSAG++ N++LAK+ +NKPN Q L + R F S +
Sbjct: 184 GAVIVEEIRVAVEKATGFRCSAGISHNKMLAKLACGLNKPNRQ-TLVSSRSVPQLF-SQM 241
Query: 140 PIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFFLSVGLGLGSTNT 198
P+ I +G + D+ G+ E+ + + L F T + + G+
Sbjct: 242 PVSSIRNLGGKLGVAITDILGVEYIGEVTKFSEMELQTHFGDKTGSWLYDLCRGIDDEPV 301
Query: 199 PQARFRKSISSERTF 213
+SI + F
Sbjct: 302 KNRHLPQSIGCSKNF 316
Score = 49 (22.3 bits), Expect = 9.4e-07, Sum P(2) = 9.4e-07
Identities = 12/34 (35%), Positives = 15/34 (44%)
Query: 449 DDYKCSLCGTEMPPSFIEERQEHSDFHLAERLQK 482
D C CG + E EH D+H A LQ+
Sbjct: 596 DQQCCEKCGQYV---LAWELPEHMDYHFAVELQR 626
>POMBASE|SPBC16A3.11 [details] [associations]
symbol:eso1 "sister chromatid cohesion protein/DNA
polymerase eta Eso1 fusion protein" species:4896
"Schizosaccharomyces pombe" [GO:0000790 "nuclear chromatin"
evidence=IC] [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=ISO]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006281 "DNA repair" evidence=ISO] [GO:0006473
"protein acetylation" evidence=IC] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0016407 "acetyltransferase activity"
evidence=ISS] [GO:0019985 "translesion synthesis" evidence=IMP]
[GO:0034087 "establishment of mitotic sister chromatid cohesion"
evidence=IMP] [GO:0034182 "regulation of maintenance of mitotic
sister chromatid cohesion" evidence=TAS] [GO:0043596 "nuclear
replication fork" evidence=IC] InterPro:IPR001126
InterPro:IPR015880 InterPro:IPR017961 InterPro:IPR017963
Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173 SMART:SM00355
PomBase:SPBC16A3.11 GO:GO:0046872 GO:GO:0003684 EMBL:CU329671
GO:GO:0008270 GenomeReviews:CU329671_GR GO:GO:0000790 GO:GO:0043596
GO:GO:0016746 GO:GO:0034087 GO:GO:0006473 GO:GO:0003887
GO:GO:0019985 eggNOG:COG0389 Gene3D:3.30.1490.100 SUPFAM:SSF100879
KO:K03509 EMBL:AB039861 PIR:T39541 RefSeq:NP_596778.1
ProteinModelPortal:O42917 IntAct:O42917 STRING:O42917
EnsemblFungi:SPBC16A3.11.1 GeneID:2539666 KEGG:spo:SPBC16A3.11
OrthoDB:EOG4M0J8V NextBio:20800820 GO:GO:0034182 Uniprot:O42917
Length = 872
Score = 130 (50.8 bits), Expect = 1.0e-06, Sum P(3) = 1.0e-06
Identities = 41/142 (28%), Positives = 74/142 (52%)
Query: 82 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 141
+I +E+R +Y + TCSAGV+ N +L+K+ S NKPN Q +L + A+ ++ SL I
Sbjct: 221 KIVKEIRDDIYLQLKYTCSAGVSFNPMLSKLVSSRNKPNKQTILTKN--AIQDYLVSLKI 278
Query: 142 RKIGGIG-KVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLGSTN-T 198
I +G K E I+ ++ G ++ +++ L + ++ G+ +T T
Sbjct: 279 TDIRMLGGKFGEEII-NLLGTDSIKDVWNMSMDFLIDKLGQTNGPLVWNLCHGIDNTEIT 337
Query: 199 PQARFRKSISSERTFSVTEDKA 220
Q + KS+ S + FS + K+
Sbjct: 338 TQVQI-KSMLSAKNFSQQKVKS 358
Score = 63 (27.2 bits), Expect = 1.0e-06, Sum P(3) = 1.0e-06
Identities = 12/41 (29%), Positives = 23/41 (56%)
Query: 449 DDYKCSLCGTEMPPSFIEERQEHSDFHLAERLQKEESGSDL 489
+ Y C C ++ + ER EH D+H+A + ++E ++L
Sbjct: 536 ETYTCEECEQKIT---LSERNEHEDYHIALSISRKERYNNL 573
Score = 45 (20.9 bits), Expect = 1.0e-06, Sum P(3) = 1.0e-06
Identities = 11/44 (25%), Positives = 20/44 (45%)
Query: 27 PELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDIT 70
P + T Y + S + K+ P AS+DE ++++T
Sbjct: 111 PNPNYYKTCLDPYRHESVKILNIIKKHAPVVKKASIDECFIELT 154
Score = 39 (18.8 bits), Expect = 0.00025, Sum P(3) = 0.00025
Identities = 18/57 (31%), Positives = 24/57 (42%)
Query: 428 DITPDNKVGTS---SNQKDQF--IWLD----DYKCSLCGTEMPPSFIEERQEHSDFH 475
++TP+ K T SN D + LD CS C E + E+ HS FH
Sbjct: 621 NLTPNWKKQTPKAISNSSDNMTQLHLDLANSTVTCSECSMEYNSTSEEDILLHSRFH 677
Score = 37 (18.1 bits), Expect = 6.5e-06, Sum P(3) = 6.5e-06
Identities = 13/42 (30%), Positives = 17/42 (40%)
Query: 22 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLD 63
A+K CPEL T K + K +PN+ LD
Sbjct: 83 AKKKCPELC---TAHVKTWKAGESEAKYHENPNPNYYKTCLD 121
>UNIPROTKB|Q81NC2 [details] [associations]
symbol:BAS3053 "ImpB/mucB/samB family protein" species:1392
"Bacillus anthracis" [GO:0003674 "molecular_function" evidence=ND]
InterPro:IPR001126 InterPro:IPR017961 InterPro:IPR017963
Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003684
GO:GO:0006281 GO:GO:0003887 Gene3D:3.30.1490.100 InterPro:IPR024728
Pfam:PF11798 SUPFAM:SSF100879 HOGENOM:HOG000082710
InterPro:IPR025188 Pfam:PF13438 KO:K03502 OMA:LWFHANG
RefSeq:NP_845581.1 RefSeq:YP_019924.1 RefSeq:YP_029310.1
ProteinModelPortal:Q81NC2 IntAct:Q81NC2 DNASU:1085004
EnsemblBacteria:EBBACT00000009721 EnsemblBacteria:EBBACT00000013537
EnsemblBacteria:EBBACT00000022229 GeneID:1085004 GeneID:2820058
GeneID:2849965 KEGG:ban:BA_3288 KEGG:bar:GBAA_3288 KEGG:bat:BAS3053
ProtClustDB:CLSK2516929 BioCyc:BANT260799:GJAJ-3115-MONOMER
BioCyc:BANT261594:GJ7F-3218-MONOMER Uniprot:Q81NC2
Length = 421
Score = 125 (49.1 bits), Expect = 0.00011, P = 0.00011
Identities = 41/144 (28%), Positives = 69/144 (47%)
Query: 28 ELIFVPTDFTKYTYYSDLTRKVFCKYDP--NFMAASLDEAYLDITEVCRERGISGIEIAE 85
+++ V Y S+ K+ +Y P +F S+DE ++DIT+ + E A
Sbjct: 77 DILIVNPIMGTYIKCSNYITKLALQYVPIEDFHQYSIDEFFMDITDSIHLFARNPNEFAL 136
Query: 86 ELRTSVYEEAGLTCSAGVAPNRLLAKVCSDIN-KPNGQFVLPNDRMAVMTFISSL-PIRK 143
+ + +YE + C+ G+APN L++KV DI K N V + T + S+ P+ K
Sbjct: 137 QFKREIYEHTRIECTIGIAPNLLMSKVALDIEAKKNKDGVAYWTYEDIPTKLWSIRPLSK 196
Query: 144 IGGIGKVTEHILRDVFGINTCEEM 167
GI TE L GI++ ++
Sbjct: 197 FWGISHKTETKLNQK-GIHSIGDL 219
>TIGR_CMR|BA_3288 [details] [associations]
symbol:BA_3288 "impB/mucB/samB family protein"
species:198094 "Bacillus anthracis str. Ames" [GO:0003674
"molecular_function" evidence=ND] [GO:0009650 "UV protection"
evidence=ISS] InterPro:IPR001126 InterPro:IPR017961
InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003684
GO:GO:0006281 GO:GO:0003887 Gene3D:3.30.1490.100 InterPro:IPR024728
Pfam:PF11798 SUPFAM:SSF100879 HOGENOM:HOG000082710
InterPro:IPR025188 Pfam:PF13438 KO:K03502 OMA:LWFHANG
RefSeq:NP_845581.1 RefSeq:YP_019924.1 RefSeq:YP_029310.1
ProteinModelPortal:Q81NC2 IntAct:Q81NC2 DNASU:1085004
EnsemblBacteria:EBBACT00000009721 EnsemblBacteria:EBBACT00000013537
EnsemblBacteria:EBBACT00000022229 GeneID:1085004 GeneID:2820058
GeneID:2849965 KEGG:ban:BA_3288 KEGG:bar:GBAA_3288 KEGG:bat:BAS3053
ProtClustDB:CLSK2516929 BioCyc:BANT260799:GJAJ-3115-MONOMER
BioCyc:BANT261594:GJ7F-3218-MONOMER Uniprot:Q81NC2
Length = 421
Score = 125 (49.1 bits), Expect = 0.00011, P = 0.00011
Identities = 41/144 (28%), Positives = 69/144 (47%)
Query: 28 ELIFVPTDFTKYTYYSDLTRKVFCKYDP--NFMAASLDEAYLDITEVCRERGISGIEIAE 85
+++ V Y S+ K+ +Y P +F S+DE ++DIT+ + E A
Sbjct: 77 DILIVNPIMGTYIKCSNYITKLALQYVPIEDFHQYSIDEFFMDITDSIHLFARNPNEFAL 136
Query: 86 ELRTSVYEEAGLTCSAGVAPNRLLAKVCSDIN-KPNGQFVLPNDRMAVMTFISSL-PIRK 143
+ + +YE + C+ G+APN L++KV DI K N V + T + S+ P+ K
Sbjct: 137 QFKREIYEHTRIECTIGIAPNLLMSKVALDIEAKKNKDGVAYWTYEDIPTKLWSIRPLSK 196
Query: 144 IGGIGKVTEHILRDVFGINTCEEM 167
GI TE L GI++ ++
Sbjct: 197 FWGISHKTETKLNQK-GIHSIGDL 219
>UNIPROTKB|P04152 [details] [associations]
symbol:umuC species:83333 "Escherichia coli K-12"
[GO:0016021 "integral to membrane" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0006974 "response to DNA damage
stimulus" evidence=IEP] [GO:0003684 "damaged DNA binding"
evidence=IEA] [GO:0000012 "single strand break repair"
evidence=IMP] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA] [GO:0009432 "SOS response" evidence=IEA]
HAMAP:MF_01113 InterPro:IPR001126 InterPro:IPR017961
InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173
GO:GO:0016021 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0003684 GO:GO:0000012 GO:GO:0009432
GO:GO:0003887 eggNOG:COG0389 Gene3D:3.30.1490.100
InterPro:IPR024728 Pfam:PF11798 SUPFAM:SSF100879 InterPro:IPR025188
Pfam:PF13438 EMBL:M10107 EMBL:M13387 PIR:E64864 RefSeq:NP_415702.1
RefSeq:YP_489451.1 ProteinModelPortal:P04152 SMR:P04152
DIP:DIP-11090N IntAct:P04152 PRIDE:P04152
EnsemblBacteria:EBESCT00000002958 EnsemblBacteria:EBESCT00000014512
GeneID:12932822 GeneID:946359 KEGG:ecj:Y75_p1156 KEGG:eco:b1184
PATRIC:32117614 EchoBASE:EB1049 EcoGene:EG11056
HOGENOM:HOG000252172 KO:K03502 OMA:SPRYTTQ ProtClustDB:PRK03609
BioCyc:EcoCyc:EG11056-MONOMER BioCyc:ECOL316407:JW1173-MONOMER
BioCyc:MetaCyc:EG11056-MONOMER Genevestigator:P04152 Uniprot:P04152
Length = 422
Score = 125 (49.1 bits), Expect = 0.00011, P = 0.00011
Identities = 47/168 (27%), Positives = 77/168 (45%)
Query: 8 ARRFGVRAAMPGFIARKL---CPELIFVPTDFTKYTYYSDLTRKVFCKYD---PNFMAAS 61
A+ GV+ P F + L C + F + Y Y+D++ +V + P S
Sbjct: 44 AKALGVKMGDPWFKQKDLFRRCGVVCFS----SNYELYADMSNRVMSTLEELSPRVEIYS 99
Query: 62 LDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP-- 119
+DEA+ D+T V R ++ + E+R +V + LT G+A + LAK+ + K
Sbjct: 100 IDEAFCDLTGVRNCRDLT--DFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQ 157
Query: 120 ---NGQFVLPN-DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINT 163
G L N +R + +S+LP+ + GIG+ L D GI T
Sbjct: 158 RQTGGVVDLSNLERQRKL--MSALPVDDVWGIGRRISKKL-DAMGIKT 202
>UNIPROTKB|I3LUT8 [details] [associations]
symbol:LOC100737500 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0006281 "DNA repair" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0003684
"damaged DNA binding" evidence=IEA] InterPro:IPR001126
InterPro:IPR017963 Pfam:PF00817 PROSITE:PS50173 GO:GO:0003684
GO:GO:0006281 GO:GO:0003887 GeneTree:ENSGT00530000062942
EMBL:CU928880 Ensembl:ENSSSCT00000029503 OMA:FRRSEAK Uniprot:I3LUT8
Length = 191
Score = 114 (45.2 bits), Expect = 0.00024, P = 0.00024
Identities = 38/119 (31%), Positives = 57/119 (47%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPT-------DFTKYTYYSDLTRKVFCKYDPNFMAA 60
AR FGV +M A+KLCP+L+ + TKY S +V ++ A
Sbjct: 54 ARAFGVTKSMWADDAKKLCPDLLLAQVLESRGKANLTKYREASAEVMEVMSRF-AMIERA 112
Query: 61 SLDEAYLDITEVCRER--GISGIEIAEELRTSVYEEA---GLTCSAG-VAPNRLLAKVC 113
S+DEA++D+T RER + G ++ +L + Y E GLT + G V +A C
Sbjct: 113 SIDEAFVDLTNAVRERLQKLQGQPVSADLLPTTYIEGFPQGLTTAEGTVEKGTSIASYC 171
>UNIPROTKB|Q8E897 [details] [associations]
symbol:rulB "SO_S mutagenesis protein RulB" species:211586
"Shewanella oneidensis MR-1" [GO:0003674 "molecular_function"
evidence=ND] InterPro:IPR001126 InterPro:IPR017961
InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173
GO:GO:0003684 GO:GO:0006281 GO:GO:0003887 InterPro:IPR024728
Pfam:PF11798 InterPro:IPR025188 Pfam:PF13438 HOGENOM:HOG000252172
KO:K03502 EMBL:AE014300 GenomeReviews:AE014300_GR
RefSeq:NP_720351.1 ProteinModelPortal:Q8E897 DNASU:1172608
GeneID:1172608 KEGG:son:SO_A0012 PATRIC:23529210 OMA:AMMEVIG
ProtClustDB:CLSK2393936 Uniprot:Q8E897
Length = 418
Score = 118 (46.6 bits), Expect = 0.00065, P = 0.00065
Identities = 41/168 (24%), Positives = 79/168 (47%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRK---VFCKYDPNFMAASLDE 64
A+ G+ +P F R LC + + + Y Y+DL+ K + ++ P S+DE
Sbjct: 44 AKEAGIPKFVPYFQIRDLCQKKGVIALS-SNYELYADLSAKMMQIIGRFAPEQYVYSIDE 102
Query: 65 AYLDITEVCRERGISGIEI-AEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP---- 119
++L T C I+ ++ A+ +R +V++EA L G+ LAK+ + K
Sbjct: 103 SFLSFTR-CYP-AITCLKTQAQAIRRAVWKEARLPVCVGIGSTLTLAKIANHAAKKISGY 160
Query: 120 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM 167
G V+ ++ + + +P+ ++ GIG+ L + GI T ++
Sbjct: 161 AGVCVIESEPQR-LAILQQMPVGEVWGIGRRLSAKLT-LMGITTAAQL 206
>TIGR_CMR|SO_A0012 [details] [associations]
symbol:SO_A0012 "SO_S mutagenesis protein, RulB"
species:211586 "Shewanella oneidensis MR-1" [GO:0003674
"molecular_function" evidence=ND] [GO:0009432 "SOS response"
evidence=ISS] InterPro:IPR001126 InterPro:IPR017961
InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173
GO:GO:0003684 GO:GO:0006281 GO:GO:0003887 InterPro:IPR024728
Pfam:PF11798 InterPro:IPR025188 Pfam:PF13438 HOGENOM:HOG000252172
KO:K03502 EMBL:AE014300 GenomeReviews:AE014300_GR
RefSeq:NP_720351.1 ProteinModelPortal:Q8E897 DNASU:1172608
GeneID:1172608 KEGG:son:SO_A0012 PATRIC:23529210 OMA:AMMEVIG
ProtClustDB:CLSK2393936 Uniprot:Q8E897
Length = 418
Score = 118 (46.6 bits), Expect = 0.00065, P = 0.00065
Identities = 41/168 (24%), Positives = 79/168 (47%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRK---VFCKYDPNFMAASLDE 64
A+ G+ +P F R LC + + + Y Y+DL+ K + ++ P S+DE
Sbjct: 44 AKEAGIPKFVPYFQIRDLCQKKGVIALS-SNYELYADLSAKMMQIIGRFAPEQYVYSIDE 102
Query: 65 AYLDITEVCRERGISGIEI-AEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP---- 119
++L T C I+ ++ A+ +R +V++EA L G+ LAK+ + K
Sbjct: 103 SFLSFTR-CYP-AITCLKTQAQAIRRAVWKEARLPVCVGIGSTLTLAKIANHAAKKISGY 160
Query: 120 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM 167
G V+ ++ + + +P+ ++ GIG+ L + GI T ++
Sbjct: 161 AGVCVIESEPQR-LAILQQMPVGEVWGIGRRLSAKLT-LMGITTAAQL 206
>CGD|CAL0002818 [details] [associations]
symbol:RAD32 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005657 "replication fork"
evidence=IEA] [GO:0070987 "error-free translesion synthesis"
evidence=IEA] [GO:0042276 "error-prone translesion synthesis"
evidence=IEA] [GO:0034087 "establishment of mitotic sister
chromatid cohesion" evidence=IEA] [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=IEA] InterPro:IPR001126
InterPro:IPR017961 InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 CGD:CAL0002818 GO:GO:0003684 GO:GO:0006281
GO:GO:0003887 EMBL:AACQ01000019 eggNOG:COG0389 Gene3D:3.30.1490.100
SUPFAM:SSF100879 KO:K03509 HOGENOM:HOG000065930 RefSeq:XP_720989.1
ProteinModelPortal:Q5AHD1 STRING:Q5AHD1 GeneID:3637340
KEGG:cal:CaO19.866 Uniprot:Q5AHD1
Length = 640
Score = 121 (47.7 bits), Expect = 0.00090, Sum P(3) = 0.00090
Identities = 27/82 (32%), Positives = 49/82 (59%)
Query: 78 ISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFIS 137
I G +I E+R ++EE G T SAG+A + +AK+ + KP+ Q ++ N A+ +F++
Sbjct: 249 IIGSQILLEVRKDIFEELGYTTSAGLARTKQVAKLAAGFKKPDAQTIIRNS--AINSFLT 306
Query: 138 SLPIRKIGGIG-KVTEHILRDV 158
+ + + G+G K+ E I+ V
Sbjct: 307 NFELTDVTGMGGKLGESIINKV 328
Score = 46 (21.3 bits), Expect = 0.00090, Sum P(3) = 0.00090
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 452 KCSLCGTEMPPSFIEERQEHSDFHLAERLQKE 483
KCS C +++ EH+D+H+A L +
Sbjct: 610 KCSRCKLS-----VDDPVEHNDYHIAMDLSNK 636
Score = 37 (18.1 bits), Expect = 0.00090, Sum P(3) = 0.00090
Identities = 6/10 (60%), Positives = 9/10 (90%)
Query: 60 ASLDEAYLDI 69
AS+DE Y+D+
Sbjct: 165 ASVDECYIDL 174
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.134 0.383 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 538 525 0.00091 119 3 11 22 0.40 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 96
No. of states in DFA: 613 (65 KB)
Total size of DFA: 286 KB (2149 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 49.59u 0.16s 49.75t Elapsed: 00:00:02
Total cpu time: 49.61u 0.16s 49.77t Elapsed: 00:00:02
Start: Mon May 20 18:53:30 2013 End: Mon May 20 18:53:32 2013