BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009298
(538 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|296083048|emb|CBI22452.3| unnamed protein product [Vitis vinifera]
Length = 704
Score = 681 bits (1756), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/565 (63%), Positives = 419/565 (74%), Gaps = 41/565 (7%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVRAAMPGFIARKLCPELIFVPTDF KYTYYSDLTRKVF KYDPNFMAASLDEAYL
Sbjct: 147 ARKFGVRAAMPGFIARKLCPELIFVPTDFKKYTYYSDLTRKVFQKYDPNFMAASLDEAYL 206
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
DITEVC ER ++ EIAEELRTSV+E GLTCSAGVAPNRLLAKVCSDINKPNGQFVLP+
Sbjct: 207 DITEVCNERDLTSGEIAEELRTSVHEVTGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPS 266
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
+RMAVMTFISSLPIRKIGGIGKVTEHIL VFGINTCEEMLQKG LCA+FS S+ADFFL
Sbjct: 267 NRMAVMTFISSLPIRKIGGIGKVTEHILSGVFGINTCEEMLQKGGFLCALFSRSSADFFL 326
Query: 188 SVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTL 247
SVGLGLG T+TPQ RFRKSIS+ERTFS T+D ALLY+KLAE++EMLS DMQKEGL GRTL
Sbjct: 327 SVGLGLGKTDTPQVRFRKSISNERTFSATDDTALLYQKLAELSEMLSIDMQKEGLSGRTL 386
Query: 248 TLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQFNEDKVR 307
TLKLKTASFEVR+RAVT+QKYI S EDIL HA LL AELP+SLRLIGLR++ FNEDK
Sbjct: 387 TLKLKTASFEVRSRAVTMQKYICSREDILNHALKLLNAELPLSLRLIGLRISHFNEDKDG 446
Query: 308 APSDPTQKTLTNFMTSGHASKKIVGDQNSLGSDINDDCLIDDKETSVSLDVSETNNY--- 364
SDPTQKTL NF+ SG AS K V + + LGSD +D + D E +S+D ET +Y
Sbjct: 447 HLSDPTQKTLANFIISGDASGKNVCEHSLLGSDTSDSHFMVDPENDLSIDNHETCHYVSE 506
Query: 365 --------------------EFGDPVCDNSLPDLNDE--NCSFSNKISEVEKIHENEVSQ 402
G +N LP LN + N + K H+ +VS
Sbjct: 507 DLLDSNLLSDLDHCNFNLSNNSGKIDNNNELP-LNGSVAKVNAPNVVGCAPKSHQIKVSH 565
Query: 403 LLEGNSLVLRQE-EGSCCDGVEEVDKDITPDNKVGTSSNQKDQFIWLDDYKCSLCGTEMP 461
L+E +S ++ E + D + D+ D+ V SSNQK+QF+W++DYKCSLCG E+P
Sbjct: 566 LVEADSFSFSEQCESNRPDRARRTNNDL--DDGV-PSSNQKEQFLWVNDYKCSLCGIELP 622
Query: 462 PSFIEERQEHSDFHLAERLQKEESGSDLRILTHRERCVRTQRDHIASHRKRKKQ------ 515
P+F+EERQEH DFHLAE+LQKEES + ++ ++ +QRDH AS R+ K+
Sbjct: 623 PNFVEERQEHFDFHLAEKLQKEESDNSRNLMLNQR---FSQRDHTASQRRHKRHKSSKKE 679
Query: 516 --KLFEKEGTHIPIDMFFAKRNRNF 538
K +KE H+PIDMFF K N+NF
Sbjct: 680 GSKSSQKESKHLPIDMFFVKSNQNF 704
>gi|225428993|ref|XP_002264518.1| PREDICTED: DNA polymerase kappa-like [Vitis vinifera]
Length = 661
Score = 662 bits (1707), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/539 (65%), Positives = 408/539 (75%), Gaps = 32/539 (5%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVRAAMPGFIARKLCPELIFVPTDF KYTYYSDLTRKVF KYDPNFMAASLDEAYL
Sbjct: 147 ARKFGVRAAMPGFIARKLCPELIFVPTDFKKYTYYSDLTRKVFQKYDPNFMAASLDEAYL 206
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
DITEVC ER ++ EIAEELRTSV+E GLTCSAGVAPNRLLAKVCSDINKPNGQFVLP+
Sbjct: 207 DITEVCNERDLTSGEIAEELRTSVHEVTGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPS 266
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
+RMAVMTFISSLPIRKIGGIGKVTEHIL VFGINTCEEMLQKG LCA+FS S+ADFFL
Sbjct: 267 NRMAVMTFISSLPIRKIGGIGKVTEHILSGVFGINTCEEMLQKGGFLCALFSRSSADFFL 326
Query: 188 SVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTL 247
SVGLGLG T+TPQ RFRKSIS+ERTFS T+D ALLY+KLAE++EMLS DMQKEGL GRTL
Sbjct: 327 SVGLGLGKTDTPQVRFRKSISNERTFSATDDTALLYQKLAELSEMLSIDMQKEGLSGRTL 386
Query: 248 TLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQFNEDKVR 307
TLKLKTASFEVR+RAVT+QKYI S EDIL HA LL AELP+SLRLIGLR++ FNEDK
Sbjct: 387 TLKLKTASFEVRSRAVTMQKYICSREDILNHALKLLNAELPLSLRLIGLRISHFNEDKDG 446
Query: 308 APSDPTQKTLTNFMTSGHASKKIVGDQNSLGSDINDDCLIDDKETSVSLDVSETNNYEFG 367
SDPTQKTL NF+ SG AS K V + + LGSD +D + D E +S+D ET +Y
Sbjct: 447 HLSDPTQKTLANFIISGDASGKNVCEHSLLGSDTSDSHFMVDPENDLSIDNHETCHYVSE 506
Query: 368 DPVCDNSLPDLNDENCSFSNKISEVEKIHENEVSQLLEGNSLVLRQEEGSCCDGVEEVDK 427
D + N L DL+ N + SN +++ +E L N V + E D +
Sbjct: 507 DLLDSNLLSDLDHCNFNLSNNSGKIDNNNE------LPLNGSVAKCESNR-PDRARRTNN 559
Query: 428 DITPDNKVGTSSNQKDQFIWLDDYKCSLCGTEMPPSFIEERQEHSDFHLAERLQKEESGS 487
D+ D+ V SSNQK+QF+W++DYKCSLCG E+PP+F+EERQEH DFHLAE+LQKEES +
Sbjct: 560 DL--DDGV-PSSNQKEQFLWVNDYKCSLCGIELPPNFVEERQEHFDFHLAEKLQKEESDN 616
Query: 488 DLRILTHRERCVRTQRDHIASHRKRKKQ--------KLFEKEGTHIPIDMFFAKRNRNF 538
R+ AS R+ K+ K +KE H+PIDMFF K N+NF
Sbjct: 617 --------------SRNLTASQRRHKRHKSSKKEGSKSSQKESKHLPIDMFFVKSNQNF 661
>gi|356539372|ref|XP_003538172.1| PREDICTED: DNA polymerase kappa-like [Glycine max]
Length = 663
Score = 660 bits (1702), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/536 (63%), Positives = 410/536 (76%), Gaps = 23/536 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVRAAMPGFIARKLCPELIFVPTDF KYTYYSDLTRKVF +YDPNF+A SLDEAYL
Sbjct: 142 ARKFGVRAAMPGFIARKLCPELIFVPTDFKKYTYYSDLTRKVFGRYDPNFIAGSLDEAYL 201
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
DITEVCRER + EIA+ELR VYEE GLTCSAGVAPNRLLAKVCSDINKPNGQ+VLPN
Sbjct: 202 DITEVCRERNVKSEEIAQELRAGVYEETGLTCSAGVAPNRLLAKVCSDINKPNGQYVLPN 261
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
DRMAVMTF+SSLPIRKIGGIGKVTEHIL+ VFGINTCE+ML+K S +CA FS STADFF
Sbjct: 262 DRMAVMTFVSSLPIRKIGGIGKVTEHILKGVFGINTCEQMLEKSSYICAFFSQSTADFFC 321
Query: 188 SVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTL 247
SVGLGLG T++PQ RFRKSISSERTFS T+D+ LL++KL E+AEMLSADMQKEGL GRTL
Sbjct: 322 SVGLGLGQTDSPQVRFRKSISSERTFSATKDEVLLHKKLEELAEMLSADMQKEGLSGRTL 381
Query: 248 TLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQFNEDKVR 307
TLKLKTASFEVRTRAVTLQKYISSSEDILKHA LL+AELP+S+RLIGLRV+QFN DK
Sbjct: 382 TLKLKTASFEVRTRAVTLQKYISSSEDILKHAKKLLQAELPISVRLIGLRVSQFNGDKCS 441
Query: 308 APSDPTQKTLTNFMTSGHASKKIVGDQNSLGSDINDDCLIDDKETSVSLDVSETNNYEFG 367
A SDPTQKT+TNF+TSG ++ S D+ D + + ET +S+D +T ++
Sbjct: 442 AKSDPTQKTITNFITSGDVNRNC-----SSFPDVADHDFVSNAETDMSIDSRQTGQLDWR 496
Query: 368 DPVCDNSLPDLNDENCSF--SNKISEVE-------KIHENEVSQLLEGNSLVLRQEEGSC 418
DP N L D++ ++C+ S+ + EV+ H + ++++L G++ L Q EG
Sbjct: 497 DPFDGNYLSDVDYQSCTVQKSDGVEEVQTSSNDATSSHYSGLTEVL-GSTSYLGQVEGIN 555
Query: 419 CDGVEEVDKDITPDNKVGTSSNQKDQFIWLDDYKCSLCGTEMPPSFIEERQEHSDFHLAE 478
+ +D D S Q+ +WL+DYKCSLCG E+PPSF+EER EHSDFHLAE
Sbjct: 556 VKNGSNLLEDERLD-----SCCQEKTMLWLNDYKCSLCGIELPPSFVEERLEHSDFHLAE 610
Query: 479 RLQKEESGSDLRILTHRERCVRTQRDHIASHRKRKKQKLFEKEGTHIPIDMFFAKR 534
+LQKEES + + + + Q+D + K KKQKL +KEG++ PID FF K+
Sbjct: 611 KLQKEESSIHQKSVPSQS---KGQKDGVTRQSKSKKQKLSQKEGSYTPIDYFFVKK 663
>gi|449438619|ref|XP_004137085.1| PREDICTED: DNA polymerase kappa-like [Cucumis sativus]
gi|449495765|ref|XP_004159938.1| PREDICTED: DNA polymerase kappa-like [Cucumis sativus]
Length = 693
Score = 655 bits (1689), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 331/555 (59%), Positives = 413/555 (74%), Gaps = 28/555 (5%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++GVRAAMPGFIAR+LCPELI VPT+F KY YYSDLTRKVF +YDPNF+AASLDEAYL
Sbjct: 143 ARKYGVRAAMPGFIARRLCPELILVPTNFDKYNYYSDLTRKVFHRYDPNFLAASLDEAYL 202
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
DITEVC+ERG++ EIA++LRTS++EE GLTCSAGVA NRLLAKVCSDINKPNGQF+LPN
Sbjct: 203 DITEVCKERGLTSEEIAKDLRTSIFEETGLTCSAGVAANRLLAKVCSDINKPNGQFILPN 262
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
DR A++TFISSLPIRKIGGIGKVTEHIL+D GINTCEEMLQKG LCA+FS S+ADFFL
Sbjct: 263 DRRAIVTFISSLPIRKIGGIGKVTEHILKDALGINTCEEMLQKGGHLCALFSQSSADFFL 322
Query: 188 SVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTL 247
SVGLGLGST+TPQ RFRKSIS+ERTF+ T D+ L+++KLA++AEMLS DM+KEGL GRTL
Sbjct: 323 SVGLGLGSTDTPQVRFRKSISNERTFAATTDERLIFQKLADLAEMLSMDMEKEGLTGRTL 382
Query: 248 TLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQFNEDKVR 307
TLKLKTASFEVRTRAVTLQKYI SS DIL+ AS LLKAELPVSLRLIGLR++QFNED
Sbjct: 383 TLKLKTASFEVRTRAVTLQKYICSSSDILQQASRLLKAELPVSLRLIGLRISQFNEDGAT 442
Query: 308 APSDPTQKTLTNFMTSGHASKKIVGDQNSLGSDINDDCLIDDKETSVSLDVSETN---NY 364
A DPTQ ++T F+TSG A++K GD SL +D N+ +DD E +D T+ ++
Sbjct: 443 AGLDPTQISITRFITSGDATRKSTGDCCSLNTDSNNHGFMDDTEIDTCIDGYGTDSETHH 502
Query: 365 EFGDPVCDNSLPDLNDENCSFSN---KISEVEKIHEN----------EVSQLLEGNSLVL 411
+ + DN +++D NC+ +N K E E + N + + + ++
Sbjct: 503 QVSNQRIDNKFSNMDDSNCTSTNDAEKSEEPENLLRNASADQANISTAIGSTSDSSDALI 562
Query: 412 RQEEGSCCDGVEEVDKDITPDNKVGT-------SSNQKDQFIWLDDYKCSLCGTEMPPSF 464
R+ + C ++ + P+N V S + Q W+D+YKC++CG E+P SF
Sbjct: 563 RRVSSTACSSSRNLEGN--PNNNVDGENQVEVRSPDNNGQIWWIDNYKCTICGAEVPASF 620
Query: 465 IEERQEHSDFHLAERLQKEESGSDLRILTHRERCVRTQRDHIASHRKRKKQK-LFEKEGT 523
++ERQEH DFH+AE+LQ+EESG +R TH R ++ ++S RK K+QK EKE
Sbjct: 621 VDERQEHIDFHIAEKLQEEESG--IRSRTHMPRQRTADKNLLSSPRKPKRQKSTPEKEVK 678
Query: 524 HIPIDMFFAKRNRNF 538
HIPID+FF K N+ F
Sbjct: 679 HIPIDLFFMKTNQKF 693
>gi|357480655|ref|XP_003610613.1| DNA polymerase IV [Medicago truncatula]
gi|355511948|gb|AES93571.1| DNA polymerase IV [Medicago truncatula]
Length = 706
Score = 606 bits (1563), Expect = e-171, Method: Compositional matrix adjust.
Identities = 317/516 (61%), Positives = 376/516 (72%), Gaps = 50/516 (9%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRK------------------- 48
AR+FGVR+AMPGFIARKLCPELIFVP DF KYT+YSDLTRK
Sbjct: 140 ARKFGVRSAMPGFIARKLCPELIFVPVDFKKYTHYSDLTRKGIIFCVTDFYIVVFPLITD 199
Query: 49 ---------VFCKYDPNFMAASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTC 99
VF +YDPNF+A SLDEAYLDITEVCRER + EIA+E+R V EE GLTC
Sbjct: 200 GSLKCTCSLVFQRYDPNFIAGSLDEAYLDITEVCRERNVKSEEIAQEIRVGVLEETGLTC 259
Query: 100 SAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVF 159
SAGVAPNRLLAKVCSDINKPNGQ+VLPNDR+AVMTFISSLPIRKIGGIGKVTE IL++VF
Sbjct: 260 SAGVAPNRLLAKVCSDINKPNGQYVLPNDRLAVMTFISSLPIRKIGGIGKVTERILKEVF 319
Query: 160 GINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDK 219
GI+TCE+ML KGS L A+FS STADFF SVGLGLG T++PQ RFRKSIS+ERTFS +ED+
Sbjct: 320 GISTCEQMLDKGSYLSALFSQSTADFFYSVGLGLGKTDSPQVRFRKSISNERTFSASEDE 379
Query: 220 ALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHA 279
ALL++KLAE+AEMLS DMQKEGL GRTLTLKLKTASFEVR RAVTLQ YI+SS+DILKHA
Sbjct: 380 ALLHKKLAELAEMLSTDMQKEGLHGRTLTLKLKTASFEVRNRAVTLQNYINSSDDILKHA 439
Query: 280 SVLLKAELPVSLRLIGLRVTQFNEDKVRAPSDPTQKTLTNFMTSGHASKKIVGDQNSLGS 339
S LLKAELPVS+RLIGLRV+QF+ K A DPTQKT+TNF+TSG A++K NS S
Sbjct: 440 SKLLKAELPVSVRLIGLRVSQFSGQKCGATPDPTQKTITNFITSGEANRK-----NSSFS 494
Query: 340 DINDDCLIDDKETSVSLDVSETNNYEFGDPVCDNSLPDLNDENCSFSNKISEVEKIHENE 399
D+ D + D ET +SLD T + DP + D+N ++ + K + EK+ ++
Sbjct: 495 DVTDHDFVTDTETDLSLDGRHTGQLDSRDPFDGDHSLDVNYQSSTL-RKTAGAEKVRTSD 553
Query: 400 ----------VSQLLEGNSLVLRQEEGSCCDGVEEVDKDITPDNKVGTSSNQKDQFIWLD 449
+++L G++ + EG + + +D P+ S Q+ +WLD
Sbjct: 554 NADASSNHSGCTKVLGGSTSFQGKFEGKNVNNGSNLLEDDRPN------SCQEMIMLWLD 607
Query: 450 DYKCSLCGTEMPPSFIEERQEHSDFHLAERLQKEES 485
DYKCSLCG E+PPSF+EER EHSDFH AE LQKEES
Sbjct: 608 DYKCSLCGAELPPSFVEERLEHSDFHFAELLQKEES 643
>gi|79362498|ref|NP_175420.3| DNA polymerase kappa subunit [Arabidopsis thaliana]
gi|46394839|gb|AAS91582.1| DNA-directed polymerase kappa [Arabidopsis thaliana]
gi|332194382|gb|AEE32503.1| DNA polymerase kappa subunit [Arabidopsis thaliana]
Length = 671
Score = 600 bits (1546), Expect = e-169, Method: Compositional matrix adjust.
Identities = 316/532 (59%), Positives = 387/532 (72%), Gaps = 14/532 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVRAAMPGFIARKLCP+LIFVP DFTKYT+YSDLTRKVF YDP+F+A SLDEAYL
Sbjct: 145 ARKFGVRAAMPGFIARKLCPDLIFVPVDFTKYTHYSDLTRKVFRNYDPHFIAGSLDEAYL 204
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
DITEVCRERG+SG EIAEELR+SVY E GLTCSAGVA NRLLAKVCSDINKPNGQFVL N
Sbjct: 205 DITEVCRERGLSGGEIAEELRSSVYSETGLTCSAGVAANRLLAKVCSDINKPNGQFVLQN 264
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
DR VMTF+S LP+RKIGGIGKVTEHIL+D GI TCEEM+QKGSLL A+FS S+ADFFL
Sbjct: 265 DRSTVMTFVSFLPVRKIGGIGKVTEHILKDALGIKTCEEMVQKGSLLYALFSQSSADFFL 324
Query: 188 SVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTL 247
SVGLGLG TNTPQ R RKSISSERTF+ T D+ LLY KL E+AEMLS DM+KEGL RTL
Sbjct: 325 SVGLGLGGTNTPQVRSRKSISSERTFAATGDERLLYSKLDELAEMLSHDMKKEGLTARTL 384
Query: 248 TLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQFNEDKVR 307
TLKLKTASFE+R+RAV+LQ+Y SS+DILKHA+ LLKAELPVS+RLIGLR++QF E+ +R
Sbjct: 385 TLKLKTASFEIRSRAVSLQRYTCSSDDILKHATKLLKAELPVSVRLIGLRMSQFVEE-IR 443
Query: 308 APSDPTQKTLTNFMTSGHASKKI--VGDQNSLGSDINDDCLIDDKETSVSLDVSETNNYE 365
SDP+Q T+T F+ +S++ + D +S D N +CL +D+ +VS ET++
Sbjct: 444 N-SDPSQGTITKFIVQKDSSRQAQDLDDNDSFDLDANKNCLSNDESGNVSFGSHETSSAH 502
Query: 366 FGDPVCDNSLPDLNDENCSFSNKISEVEKIHENEVSQLLEGNSLVLRQEEGSCCDGVEEV 425
D V ++ I E + + E Q+LEG+SL+ + +E C
Sbjct: 503 LKDVVEYEERSQIDSGKV-----IPNQECMKKEERLQILEGDSLLKKYKE--CKPDTSHS 555
Query: 426 DKDITPDNKVGTSSNQKDQFIWLDDYKCSLCGTEMPPSFIEERQEHSDFHLAERLQKEES 485
D + + + Q + W+D YKC LCG E+PPSF+EERQEHSDFHLA+RLQ EE+
Sbjct: 556 MNDNSNATEAVSVFPQTEPLYWIDGYKCVLCGIELPPSFVEERQEHSDFHLAQRLQNEET 615
Query: 486 GSDLRILTHRERCVRTQRDHIASHRKRKKQKLFEKEGTHIPIDMFFAKRNRN 537
GS + R + ++ + + +K++ + HIPI FF K N+N
Sbjct: 616 GSSSSTTPSKRRILGKEK---VNSKPKKQKPDQKDSSKHIPIHAFFTKSNQN 664
>gi|297847332|ref|XP_002891547.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297337389|gb|EFH67806.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 636
Score = 561 bits (1445), Expect = e-157, Method: Compositional matrix adjust.
Identities = 308/531 (58%), Positives = 368/531 (69%), Gaps = 47/531 (8%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVRAAMPGFIARKLCP+LIFVP DFTKYT+YSDLTRKVF YDP+F+A SLDEAYL
Sbjct: 145 ARKFGVRAAMPGFIARKLCPDLIFVPVDFTKYTHYSDLTRKVFRNYDPHFIAGSLDEAYL 204
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
DITEVCRERG+SG EIAEELR+SVY E GLTCSAGVA NRLLAKVCSDINKPNGQFVL N
Sbjct: 205 DITEVCRERGLSGGEIAEELRSSVYSETGLTCSAGVAANRLLAKVCSDINKPNGQFVLQN 264
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
DR VMTF+SSLP+RKIGGIGKVTEHIL+D GI TCEEM+QKG LL A+FS S+ADFFL
Sbjct: 265 DRSTVMTFVSSLPVRKIGGIGKVTEHILKDALGIKTCEEMVQKGPLLYALFSQSSADFFL 324
Query: 188 SVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTL 247
SVGLGLG T+TPQ R RKSISSERTF+ T D+ LLY KLAEIAEMLS DM+KEGL RTL
Sbjct: 325 SVGLGLGGTDTPQVRSRKSISSERTFAATGDERLLYSKLAEIAEMLSHDMKKEGLTARTL 384
Query: 248 TLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQFNEDKVR 307
TLKLKTASFE+R+RAV+LQ+Y SS+DILKHA+ LLKAELPVS+RLIGLR++QF ++R
Sbjct: 385 TLKLKTASFEIRSRAVSLQRYTCSSDDILKHATKLLKAELPVSVRLIGLRMSQF-VGEIR 443
Query: 308 APSDPTQKTLTNFMTSGHASKKIVGDQNSLGSDINDDCLIDDKETSVSLDVSETNNYEFG 367
SDP+Q T+T F+ +S++ + D +S D + +CL +D S+S ET+
Sbjct: 444 N-SDPSQGTITKFIVQKDSSRQDLDDNDSFDLDASKNCLSND--LSLSFGSHETSYAHLK 500
Query: 368 DPVCDNSLPDLNDENCSFSNKISEVEKIHENEVSQLLEGNSLVLRQEEGSCCDGVEEVDK 427
D V E E ++ ++ QE C K
Sbjct: 501 DVV--------------------------EYEERSQIDSEKVIPNQE---CV-------K 524
Query: 428 DITPDNKVGTSSNQKDQFIWLDDYKCSLCGTEMPPSFIEERQEHSDFHLAERLQKEESGS 487
N S+N W+D YKC LCG E+PPSF+EERQEH + R K ++
Sbjct: 525 KKKGRNSFSISAN--GPLYWVDGYKCVLCGIELPPSFVEERQEHLLIFILLRDFKTKN-L 581
Query: 488 DLRILTHRERCVRTQRDHIASHRKRKKQKLFEKEGT-HIPIDMFFAKRNRN 537
DL + H + + + KRKKQK +K+ + HIPI FF K N+N
Sbjct: 582 DLVLPQHLQNEGQLTE---KVNSKRKKQKPDQKDSSKHIPIHTFFTKSNQN 629
>gi|242038847|ref|XP_002466818.1| hypothetical protein SORBIDRAFT_01g014630 [Sorghum bicolor]
gi|241920672|gb|EER93816.1| hypothetical protein SORBIDRAFT_01g014630 [Sorghum bicolor]
Length = 668
Score = 543 bits (1400), Expect = e-152, Method: Compositional matrix adjust.
Identities = 295/543 (54%), Positives = 374/543 (68%), Gaps = 32/543 (5%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVRAAMPGFI KLCP L+FV +F +YT+YS+LTRKVF +YDPNF+A SLDEAYL
Sbjct: 146 ARKFGVRAAMPGFIGCKLCPGLVFVRPNFERYTHYSELTRKVFQRYDPNFIATSLDEAYL 205
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
+IT VC ERGI+G E+A ELR+++Y+E GLTCSAGVAPNR++AKVCSDINKPNGQF+LPN
Sbjct: 206 NITNVCIERGITGEEVATELRSAIYQETGLTCSAGVAPNRMIAKVCSDINKPNGQFILPN 265
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
DR AV+TF+S+LPIRKIGGIGKVTE +LR V GI+TC+EMLQK + LCA+FS +ADFFL
Sbjct: 266 DREAVLTFVSTLPIRKIGGIGKVTEQMLRQVLGISTCQEMLQKAAFLCALFSEGSADFFL 325
Query: 188 SVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTL 247
SVGLGLG T TP+ R RKSIS ERTF+ T D +LL+ KL +AE L+ D+QKEGL+G+TL
Sbjct: 326 SVGLGLGGTETPEQRQRKSISCERTFAATNDSSLLFEKLDSLAENLTDDLQKEGLKGKTL 385
Query: 248 TLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQFNEDKVR 307
TLKLKTA FEVRTRAVT + YI+S EDIL +A+ LLKAE+P+SLRL+GLR++Q +++K
Sbjct: 386 TLKLKTADFEVRTRAVTTRNYINSKEDILVYATKLLKAEMPLSLRLMGLRMSQLHDEK-D 444
Query: 308 APSDPTQKTLTNFM-------TSGHASKKIV---GDQNSLGSDINDDCLIDDKETSVSLD 357
PS TQKTL F ++I G N S + L+ D T VS
Sbjct: 445 DPSTSTQKTLDIFFRSSNGNSNVNGNVQRITNTSGQDNDSISLTTKEYLVPDAGTGVS-- 502
Query: 358 VSETNNYEFGDPVCDNSLPDLNDENCSFSNKISEVEKIHENEVSQLLEGNSL--VLRQEE 415
T+ +F L+DE+C + S +E +S+ L G L V +
Sbjct: 503 ---TDQQDFF----------LHDESCFIPEQRSFGNHSNEAVISKPLGGTKLDDVSSSAK 549
Query: 416 GSCCDGVEEVDKDITPDNKVGTSSNQKDQFIWLDDYKCSLCGTEMPPSFIEERQEHSDFH 475
+ + + E D I+P K SS++ DQ W+D Y CS+CG E+PP F EER EHSDFH
Sbjct: 550 VAPAEKLNEPDNLISP--KAVASSSKPDQQSWIDGYICSICGFELPPGFEEERLEHSDFH 607
Query: 476 LAERLQKEESGSDLRILTHRERCVRTQRDHIASHRKRKKQKLFEKEGTHIPIDMFFAKRN 535
LAE LQ+EE+ R +++ ER +R + +KK K KEG HIPID FF K N
Sbjct: 608 LAETLQQEEAVDGTRHISN-ERLADRERPCSTTPTPKKKLK-SSKEGKHIPIDAFFTKCN 665
Query: 536 RNF 538
+N
Sbjct: 666 KNL 668
>gi|293334565|ref|NP_001167938.1| uncharacterized protein LOC100381652 [Zea mays]
gi|223944997|gb|ACN26582.1| unknown [Zea mays]
Length = 535
Score = 539 bits (1389), Expect = e-150, Method: Compositional matrix adjust.
Identities = 289/549 (52%), Positives = 374/549 (68%), Gaps = 44/549 (8%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVRAAMPGFI KLCP+L+FVP +F +YT+YS+LTRKVF +YDPNF+A SLDEAYL
Sbjct: 11 ARKFGVRAAMPGFIGCKLCPDLVFVPPNFERYTHYSELTRKVFQRYDPNFIATSLDEAYL 70
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
+IT VC ERGI+G E+A ELR+++++E GLTCSAGVAPNR++AKVCSDINKPNGQF+LPN
Sbjct: 71 NITNVCIERGITGEEVAIELRSAIHQETGLTCSAGVAPNRMIAKVCSDINKPNGQFILPN 130
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
DR AV+TF+S+LPIRKIGGIGKVTE +L V GI+TC+EMLQK + LCA+FS S+ADFFL
Sbjct: 131 DREAVLTFVSTLPIRKIGGIGKVTEQMLHQVLGISTCQEMLQKAAFLCALFSESSADFFL 190
Query: 188 SVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTL 247
SVGLGLG T TP+ R RKSIS ERTF+ T D +LL++KLA +AE LS D+QKEG +G+TL
Sbjct: 191 SVGLGLGGTETPEQRQRKSISCERTFTATNDSSLLFKKLASLAENLSDDLQKEGFKGKTL 250
Query: 248 TLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQFNEDKVR 307
TLKLKTA FEVRTRAVT + YI S EDIL +A+ L+KAE+P+SLRL+GLR++Q +++K
Sbjct: 251 TLKLKTADFEVRTRAVTTRNYIDSKEDILVYATKLIKAEMPISLRLMGLRMSQLHDEK-D 309
Query: 308 APSDPTQKTLTNFM------------TSGHASKKIVGDQNSLGSDINDDCLIDDKETSVS 355
PS TQKTL F T + D +S+ ++ L D TSVS
Sbjct: 310 DPSTSTQKTLDIFFRSSNSNSNGNGTTVQRITNSPGQDNDSISLTTKEEYLAPDAGTSVS 369
Query: 356 LDVSETNNYEFGDPVCDNSLPDLNDENCSFSNKISEVEKIHENEVSQLLEGNSL------ 409
T +F L+DE C I E ++ +N+ + + + L
Sbjct: 370 -----TGQQDFF----------LHDEICF----IPEQQRSLDNDTKEAVLSDPLGGTKSD 410
Query: 410 -VLRQEEGSCCDGVEEVDKDITPDNKVGTSSNQKDQFIWLDDYKCSLCGTEMPPSFIEER 468
V + + ++E D I+P K +SS++ DQ W+D Y CS+CG E+PP F EER
Sbjct: 411 DVSSSAKVTPTKKLDEPDPLISP--KAVSSSSKPDQQSWIDGYICSICGFELPPGFEEER 468
Query: 469 QEHSDFHLAERLQKEESGSDLRILTHRERCVRTQRDHIASHRKRKKQKLFEKEGTHIPID 528
EHSDFHLAE LQ+EE+ R +++ R + +K+ K KEG HIPID
Sbjct: 469 LEHSDFHLAETLQQEEAVDGTRHISNESWVAERPRSTAPTPKKKLKSS---KEGKHIPID 525
Query: 529 MFFAKRNRN 537
FF K N++
Sbjct: 526 SFFTKCNKS 534
>gi|413933667|gb|AFW68218.1| hypothetical protein ZEAMMB73_188779 [Zea mays]
Length = 670
Score = 538 bits (1385), Expect = e-150, Method: Compositional matrix adjust.
Identities = 289/545 (53%), Positives = 373/545 (68%), Gaps = 36/545 (6%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVRAAMPGFI KLCP+L+FVP +F +YT+YS+LTRKVF +YDPNF+A SLDEAYL
Sbjct: 146 ARKFGVRAAMPGFIGCKLCPDLVFVPPNFERYTHYSELTRKVFQRYDPNFIATSLDEAYL 205
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
+IT VC ERGI+G E+A ELR+++++E GLTCSAGVAPNR++AKVCSDINKPNGQF+LPN
Sbjct: 206 NITNVCIERGITGEEVAIELRSAIHQETGLTCSAGVAPNRMIAKVCSDINKPNGQFILPN 265
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
D AV+TF+S+LPIRKIGGIGKVTE +L V GI+TC+EMLQK + LCA+FS S+ADFFL
Sbjct: 266 DWEAVLTFVSTLPIRKIGGIGKVTEQMLHQVLGISTCQEMLQKAAFLCALFSESSADFFL 325
Query: 188 SVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTL 247
SVGLGLG T TP+ R RKSIS ERTF+ T D +LL++KLA +AE LS D+QKEG +G+TL
Sbjct: 326 SVGLGLGGTETPEQRQRKSISCERTFTATNDSSLLFKKLASLAENLSDDLQKEGFKGKTL 385
Query: 248 TLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQFNEDKVR 307
TLKLKTA FEVRTRAVT + YI S EDIL +A+ L+KAE+P+SLRL+GLR++Q +++K
Sbjct: 386 TLKLKTADFEVRTRAVTTRNYIDSKEDILVYATKLIKAEMPISLRLMGLRMSQLHDEK-D 444
Query: 308 APSDPTQKTLTNFM-----TSGHASKKIVGDQNSLGSDINDDCLIDDKETSVSLDVS--- 359
PS TQKTL F S + NS G D ND + KE ++ D
Sbjct: 445 DPSTSTQKTLDIFFRSSNSNSNGNGTTVQRITNSPGQD-NDSISLTTKEEYLAPDAGTSV 503
Query: 360 ETNNYEFGDPVCDNSLPDLNDENCSFSNKISEVEKIHENEVSQLLEGNSL-------VLR 412
T +F L+DE C I E ++ +N+ + + + L V
Sbjct: 504 STGQQDFF----------LHDEICF----IPEQQRSLDNDTKEAVLSDPLGGTKSDDVSS 549
Query: 413 QEEGSCCDGVEEVDKDITPDNKVGTSSNQKDQFIWLDDYKCSLCGTEMPPSFIEERQEHS 472
+ + ++E D I+P K +SS++ DQ W+D Y CS+CG E+PP F EER EHS
Sbjct: 550 SAKVTPTKKLDEPDPLISP--KAVSSSSKPDQQSWIDGYICSICGFELPPGFEEERLEHS 607
Query: 473 DFHLAERLQKEESGSDLRILTHRERCVRTQRDHIASHRKRKKQKLFEKEGTHIPIDMFFA 532
DFHLAE LQ+EE+ R +++ R + +K+ K KEG HIPID FF
Sbjct: 608 DFHLAETLQQEEAVDGTRHISNESWVAERPRSTAPTPKKKLKSS---KEGKHIPIDSFFT 664
Query: 533 KRNRN 537
K N++
Sbjct: 665 KCNKS 669
>gi|326498699|dbj|BAK02335.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 655
Score = 531 bits (1369), Expect = e-148, Method: Compositional matrix adjust.
Identities = 288/543 (53%), Positives = 357/543 (65%), Gaps = 45/543 (8%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVRAAMPGFI KLCP L+FV +F +YT+YS L RKVF +YDPNF+A SLDEAYL
Sbjct: 146 ARKFGVRAAMPGFIGCKLCPNLVFVRPNFERYTHYSGLARKVFQRYDPNFLATSLDEAYL 205
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
DITEVC ERGI+G E+A ELR +V++E GLTCSAGVAPNR++AKVCSDINKPNGQF+LPN
Sbjct: 206 DITEVCSERGITGEEVASELRDAVHQETGLTCSAGVAPNRMIAKVCSDINKPNGQFILPN 265
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
DR AV TF+S+LPIRKIGGIGKVTE +L V GI TC+EMLQK + LCA+FS + DFFL
Sbjct: 266 DRDAVTTFVSTLPIRKIGGIGKVTEQMLHQVLGITTCQEMLQKAAFLCALFSEGSTDFFL 325
Query: 188 SVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTL 247
SVGLGLG T TP+ R RKS+S ERTFS T D LL+ KL +AE L+ DMQKE L+GRTL
Sbjct: 326 SVGLGLGGTETPEHRLRKSMSCERTFSATNDSRLLFEKLDNLAENLADDMQKECLKGRTL 385
Query: 248 TLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQFNEDKVR 307
TLKLKTA+FEVRTRA T Q YISS EDIL +A LLKAE+P+SLRL+GLR++ F+ +K
Sbjct: 386 TLKLKTAAFEVRTRAATAQNYISSKEDILIYAKKLLKAEMPLSLRLMGLRMSHFSGEKDD 445
Query: 308 APSDPTQKTLTNFM--------TSGHASKKIV----GDQNSLGSDINDDCLIDDKETSVS 355
+ S PTQKTL F T+G + GD + + + D+C I D E V
Sbjct: 446 STS-PTQKTLDRFFHSSDINSNTNGTNGASCIDVSGGDNDCNDATMKDECSIHDAEKDVP 504
Query: 356 LDVSETNNYEFGDPVCDNSLPDLNDENCSFSNKISEVEKIHENEVSQLLEGNSLVLRQEE 415
+D ++ P +S+ + ++E S S K++ +EK +E+ L + +
Sbjct: 505 VDQRPSHEENSSVPEGASSV-NYDNEVASSSWKVTRIEKF--DELGDLTSSKASASSSKH 561
Query: 416 GSCCDGVEEVDKDITPDNKVGTSSNQKDQFIWLDDYKCSLCGTEMPPSFIEERQEHSDFH 475
G Q W+D Y CS+CG E+PP F EERQEHSDFH
Sbjct: 562 G---------------------------QHFWVDGYICSMCGFELPPCFEEERQEHSDFH 594
Query: 476 LAERLQKEESGSDLRILTHRERCVRTQRDHIASHRKRKKQKLFEKEGTHIPIDMFFAKRN 535
LAE LQ+EE+ L+ +ER + +KK K KEG HIPID FF K N
Sbjct: 595 LAEMLQQEEAVDGTARLS-KERLAERPCSSATTPTPKKKLK-SSKEGKHIPIDSFFLKCN 652
Query: 536 RNF 538
+N
Sbjct: 653 KNL 655
>gi|222625365|gb|EEE59497.1| hypothetical protein OsJ_11733 [Oryza sativa Japonica Group]
Length = 662
Score = 527 bits (1357), Expect = e-147, Method: Compositional matrix adjust.
Identities = 291/547 (53%), Positives = 369/547 (67%), Gaps = 43/547 (7%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVRAAMPGFI KLCPEL+FV +F +YTYYS+LTRKVF +YDPNF+A SLDEAYL
Sbjct: 143 ARKFGVRAAMPGFIGCKLCPELVFVRPNFERYTYYSELTRKVFQRYDPNFVATSLDEAYL 202
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
+IT+VC +RGI+G E+A ELR ++++E GLTCSAGVAPNR++AKVCSDINKPNGQF+LPN
Sbjct: 203 NITKVCFDRGITGEEVATELRGAIHQETGLTCSAGVAPNRMIAKVCSDINKPNGQFILPN 262
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
D+ AV TF+S+LPIRKIGGIGKVTE +LR V GI+TC+EMLQK S LCA+FS S+ADFF+
Sbjct: 263 DQEAVTTFVSTLPIRKIGGIGKVTEQMLRQVLGISTCQEMLQKASFLCALFSESSADFFI 322
Query: 188 SVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTL 247
SVGLGLG T TP+ R RKSIS ERTF T+D ++L+ KL +A+ L+ DMQKE L+GRTL
Sbjct: 323 SVGLGLGGTETPEQRLRKSISCERTFRATDDCSMLFEKLDSLADNLADDMQKECLKGRTL 382
Query: 248 TLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQFNEDKVR 307
TLKLKTA+FEVRTRAVT Q YI+S EDIL +A LLKAELP+SLRL+GLR++Q ++K
Sbjct: 383 TLKLKTAAFEVRTRAVTTQNYINSKEDILIYARKLLKAELPLSLRLMGLRMSQLRDEKDD 442
Query: 308 APSDPTQKTLTNFMTSGHASKKIVGDQNSLGSDINDDCLIDDKETSVSLDVSETNNYEFG 367
+ S TQKTL F + S I + S+G+ D + T V +Y
Sbjct: 443 S-STQTQKTLDRFFRTPDNSNVIGANSPSIGNTTGGDNYCTNVMTKV--------DYLEH 493
Query: 368 DPVCDNSLPDLNDENCSFSNKISEVEKIHENEVSQLLEGNSLVLRQEEGSCCDGV--EEV 425
D + D +L L+++N S +N + N L+ CDGV +E+
Sbjct: 494 DSMDDQAL-FLHEKNLFVPEGRSS-----DNYNNDAASSNPLM--------CDGVGGKEL 539
Query: 426 DKDITPDNKVGT--------------SSNQKDQFIWLDDYKCSLCGTEMPPSFIEERQEH 471
D D + T SS++ DQ W++ Y CS+CG E+PP F EERQEH
Sbjct: 540 DDDSSSSKGTHTVKFDGQLTSSNATTSSSKPDQLFWINGYICSICGFELPPGFEEERQEH 599
Query: 472 SDFHLAERLQKEESGSDLRILTHRERCVRTQRDHIASHRKRKKQKLFEKEGTHIPIDMFF 531
SDFHLAE LQ+EE+ L+ +ER + +K+ K KEG HIPID FF
Sbjct: 600 SDFHLAEMLQQEEAVDSTGPLS-KERLAERPCSSTPTPKKKLKS---SKEGKHIPIDAFF 655
Query: 532 AKRNRNF 538
K N+N
Sbjct: 656 HKVNKNL 662
>gi|115454119|ref|NP_001050660.1| Os03g0616300 [Oryza sativa Japonica Group]
gi|113549131|dbj|BAF12574.1| Os03g0616300 [Oryza sativa Japonica Group]
Length = 617
Score = 527 bits (1357), Expect = e-147, Method: Compositional matrix adjust.
Identities = 291/547 (53%), Positives = 369/547 (67%), Gaps = 43/547 (7%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVRAAMPGFI KLCPEL+FV +F +YTYYS+LTRKVF +YDPNF+A SLDEAYL
Sbjct: 98 ARKFGVRAAMPGFIGCKLCPELVFVRPNFERYTYYSELTRKVFQRYDPNFVATSLDEAYL 157
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
+IT+VC +RGI+G E+A ELR ++++E GLTCSAGVAPNR++AKVCSDINKPNGQF+LPN
Sbjct: 158 NITKVCFDRGITGEEVATELRGAIHQETGLTCSAGVAPNRMIAKVCSDINKPNGQFILPN 217
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
D+ AV TF+S+LPIRKIGGIGKVTE +LR V GI+TC+EMLQK S LCA+FS S+ADFF+
Sbjct: 218 DQEAVTTFVSTLPIRKIGGIGKVTEQMLRQVLGISTCQEMLQKASFLCALFSESSADFFI 277
Query: 188 SVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTL 247
SVGLGLG T TP+ R RKSIS ERTF T+D ++L+ KL +A+ L+ DMQKE L+GRTL
Sbjct: 278 SVGLGLGGTETPEQRLRKSISCERTFRATDDCSMLFEKLDSLADNLADDMQKECLKGRTL 337
Query: 248 TLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQFNEDKVR 307
TLKLKTA+FEVRTRAVT Q YI+S EDIL +A LLKAELP+SLRL+GLR++Q ++K
Sbjct: 338 TLKLKTAAFEVRTRAVTTQNYINSKEDILIYARKLLKAELPLSLRLMGLRMSQLRDEKDD 397
Query: 308 APSDPTQKTLTNFMTSGHASKKIVGDQNSLGSDINDDCLIDDKETSVSLDVSETNNYEFG 367
+ S TQKTL F + S I + S+G+ D + T V +Y
Sbjct: 398 S-STQTQKTLDRFFRTPDNSNVIGANSPSIGNTTGGDNYCTNVMTKV--------DYLEH 448
Query: 368 DPVCDNSLPDLNDENCSFSNKISEVEKIHENEVSQLLEGNSLVLRQEEGSCCDGV--EEV 425
D + D +L L+++N S +N + N L+ CDGV +E+
Sbjct: 449 DSMDDQAL-FLHEKNLFVPEGRSS-----DNYNNDAASSNPLM--------CDGVGGKEL 494
Query: 426 DKDITPDNKVGT--------------SSNQKDQFIWLDDYKCSLCGTEMPPSFIEERQEH 471
D D + T SS++ DQ W++ Y CS+CG E+PP F EERQEH
Sbjct: 495 DDDSSSSKGTHTVKFDGQLTSSNATTSSSKPDQLFWINGYICSICGFELPPGFEEERQEH 554
Query: 472 SDFHLAERLQKEESGSDLRILTHRERCVRTQRDHIASHRKRKKQKLFEKEGTHIPIDMFF 531
SDFHLAE LQ+EE+ L+ +ER + +K+ K KEG HIPID FF
Sbjct: 555 SDFHLAEMLQQEEAVDSTGPLS-KERLAERPCSSTPTPKKKLKSS---KEGKHIPIDAFF 610
Query: 532 AKRNRNF 538
K N+N
Sbjct: 611 HKVNKNL 617
>gi|50838892|gb|AAT81653.1| putative DNA-directed polymerase, having alternative splicing
products [Oryza sativa Japonica Group]
gi|108709841|gb|ABF97636.1| DNA-directed polymerase kappa, putative, expressed [Oryza sativa
Japonica Group]
Length = 616
Score = 526 bits (1356), Expect = e-147, Method: Compositional matrix adjust.
Identities = 291/547 (53%), Positives = 369/547 (67%), Gaps = 43/547 (7%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVRAAMPGFI KLCPEL+FV +F +YTYYS+LTRKVF +YDPNF+A SLDEAYL
Sbjct: 97 ARKFGVRAAMPGFIGCKLCPELVFVRPNFERYTYYSELTRKVFQRYDPNFVATSLDEAYL 156
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
+IT+VC +RGI+G E+A ELR ++++E GLTCSAGVAPNR++AKVCSDINKPNGQF+LPN
Sbjct: 157 NITKVCFDRGITGEEVATELRGAIHQETGLTCSAGVAPNRMIAKVCSDINKPNGQFILPN 216
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
D+ AV TF+S+LPIRKIGGIGKVTE +LR V GI+TC+EMLQK S LCA+FS S+ADFF+
Sbjct: 217 DQEAVTTFVSTLPIRKIGGIGKVTEQMLRQVLGISTCQEMLQKASFLCALFSESSADFFI 276
Query: 188 SVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTL 247
SVGLGLG T TP+ R RKSIS ERTF T+D ++L+ KL +A+ L+ DMQKE L+GRTL
Sbjct: 277 SVGLGLGGTETPEQRLRKSISCERTFRATDDCSMLFEKLDSLADNLADDMQKECLKGRTL 336
Query: 248 TLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQFNEDKVR 307
TLKLKTA+FEVRTRAVT Q YI+S EDIL +A LLKAELP+SLRL+GLR++Q ++K
Sbjct: 337 TLKLKTAAFEVRTRAVTTQNYINSKEDILIYARKLLKAELPLSLRLMGLRMSQLRDEKDD 396
Query: 308 APSDPTQKTLTNFMTSGHASKKIVGDQNSLGSDINDDCLIDDKETSVSLDVSETNNYEFG 367
+ S TQKTL F + S I + S+G+ D + T V +Y
Sbjct: 397 S-STQTQKTLDRFFRTPDNSNVIGANSPSIGNTTGGDNYCTNVMTKV--------DYLEH 447
Query: 368 DPVCDNSLPDLNDENCSFSNKISEVEKIHENEVSQLLEGNSLVLRQEEGSCCDGV--EEV 425
D + D +L L+++N S +N + N L+ CDGV +E+
Sbjct: 448 DSMDDQAL-FLHEKNLFVPEGRSS-----DNYNNDAASSNPLM--------CDGVGGKEL 493
Query: 426 DKDITPDNKVGT--------------SSNQKDQFIWLDDYKCSLCGTEMPPSFIEERQEH 471
D D + T SS++ DQ W++ Y CS+CG E+PP F EERQEH
Sbjct: 494 DDDSSSSKGTHTVKFDGQLTSSNATTSSSKPDQLFWINGYICSICGFELPPGFEEERQEH 553
Query: 472 SDFHLAERLQKEESGSDLRILTHRERCVRTQRDHIASHRKRKKQKLFEKEGTHIPIDMFF 531
SDFHLAE LQ+EE+ L+ +ER + +K+ K KEG HIPID FF
Sbjct: 554 SDFHLAEMLQQEEAVDSTGPLS-KERLAERPCSSTPTPKKKLKSS---KEGKHIPIDAFF 609
Query: 532 AKRNRNF 538
K N+N
Sbjct: 610 HKVNKNL 616
>gi|125544869|gb|EAY91008.1| hypothetical protein OsI_12613 [Oryza sativa Indica Group]
Length = 1626
Score = 521 bits (1343), Expect = e-145, Method: Compositional matrix adjust.
Identities = 288/542 (53%), Positives = 366/542 (67%), Gaps = 43/542 (7%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVRAAMPGFI KLCPEL+FV +F +YTYYS+LTRKVF +YDPNF+A SLDEAYL
Sbjct: 143 ARKFGVRAAMPGFIGCKLCPELVFVRPNFERYTYYSELTRKVFQRYDPNFVATSLDEAYL 202
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
+IT+VC +RGI+G E+A ELR ++++E GLTCSAGVAPNR++AKVCSDINKPNGQF+LPN
Sbjct: 203 NITKVCFDRGITGEEVATELRGAIHQETGLTCSAGVAPNRMIAKVCSDINKPNGQFILPN 262
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
D+ AV TF+S+LPIRKIGGIGKVTE +LR V GI+TC+EMLQK S LCA+FS S+ADFF+
Sbjct: 263 DQEAVTTFVSTLPIRKIGGIGKVTEQMLRQVLGISTCQEMLQKASFLCALFSESSADFFI 322
Query: 188 SVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTL 247
SVGLGLG T TP+ R RKSIS ERTF T+D ++L+ KL +A+ L+ DMQKE L+GRTL
Sbjct: 323 SVGLGLGGTETPEQRLRKSISCERTFRATDDCSMLFEKLDSLADNLADDMQKECLKGRTL 382
Query: 248 TLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQFNEDKVR 307
TLKLKTA+FEVRTRAVT Q YI+S EDIL +A LLKAELP+SLRL+GLR++Q ++K
Sbjct: 383 TLKLKTAAFEVRTRAVTTQNYINSKEDILIYARKLLKAELPLSLRLMGLRMSQLRDEKDD 442
Query: 308 APSDPTQKTLTNFMTSGHASKKIVGDQNSLGSDINDDCLIDDKETSVSLDVSETNNYEFG 367
+ S TQKTL F + S I + S+G+ D + T V +Y
Sbjct: 443 S-STQTQKTLDRFFRTPDNSNVIGANSPSIGNTTGGDNYCTNVMTKV--------DYLEH 493
Query: 368 DPVCDNSLPDLNDENCSFSNKISEVEKIHENEVSQLLEGNSLVLRQEEGSCCDGV--EEV 425
D + D +L L+++N S +N + N L+ CDGV +E+
Sbjct: 494 DSMDDQAL-FLHEKNLFVPEGRSS-----DNYNNDAASSNPLM--------CDGVGGKEL 539
Query: 426 DKDITPDNKVGT--------------SSNQKDQFIWLDDYKCSLCGTEMPPSFIEERQEH 471
D D + T SS++ DQ W++ Y CS+CG E+PP F EERQEH
Sbjct: 540 DDDSSSSKGTHTVKFDGQLTSSNATTSSSKPDQLFWINGYICSICGFELPPGFEEERQEH 599
Query: 472 SDFHLAERLQKEESGSDLRILTHRERCVRTQRDHIASHRKRKKQKLFEKEGTHIPIDMFF 531
SD+HLAE LQ+EE+ L+ +ER + +K+ K KEG HIPID FF
Sbjct: 600 SDYHLAEMLQQEEAVDSTGPLS-KERLAERPCSSTPTPKKKLKS---SKEGKHIPIDAFF 655
Query: 532 AK 533
K
Sbjct: 656 HK 657
>gi|357115809|ref|XP_003559678.1| PREDICTED: DNA polymerase kappa-like [Brachypodium distachyon]
Length = 626
Score = 521 bits (1342), Expect = e-145, Method: Compositional matrix adjust.
Identities = 293/554 (52%), Positives = 359/554 (64%), Gaps = 50/554 (9%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVRAAMPGFI KLCP+L+FV +F +YT+YS+L RKVF +YDPNF A SLDEAYL
Sbjct: 100 ARKFGVRAAMPGFIGCKLCPDLVFVRPNFERYTHYSELARKVFQRYDPNFFATSLDEAYL 159
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
+ITEVC ERGI+G E+A ELR ++++E GLTCS GVAPNR++AKVCSDINKPNGQF+LPN
Sbjct: 160 NITEVCIERGITGEEVASELRGAIHQETGLTCSVGVAPNRMIAKVCSDINKPNGQFILPN 219
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
+R AV TF+S+LPIRKIGGIGKVTE +L V GI TC++MLQK + LCA+FS + DFFL
Sbjct: 220 ERDAVTTFVSTLPIRKIGGIGKVTEQMLHQVLGITTCQQMLQKAAFLCALFSEGSTDFFL 279
Query: 188 SVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTL 247
SVGLGLG T TP+ R RKS+S ERTFS T D +L + KL +AE L+ D+QKE L+GRTL
Sbjct: 280 SVGLGLGGTETPEHRLRKSMSCERTFSATNDYSLQFEKLDNLAENLADDLQKECLKGRTL 339
Query: 248 TLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQFNEDKVR 307
TLKLKTA+FEVRTRA T Q YISS EDIL A LLKAELP+SLRL+GLR++ +K
Sbjct: 340 TLKLKTAAFEVRTRAATAQSYISSKEDILICAKKLLKAELPLSLRLMGLRMSHLCGEK-D 398
Query: 308 APSDPTQKTLTNFM-----------TSGHASKKIV-GDQNSLGSDINDDCLIDDKETSVS 355
P+ PTQKTL F T+G +S GD ++G+ D+CLI D T +S
Sbjct: 399 DPTIPTQKTLDRFFRLSDNNSNVNRTNGASSNDASGGDDCNIGATTKDECLIHDAVTDIS 458
Query: 356 LDVSETNNYEFGDPVCDNSLPDLNDENCSFSNKISEVEKIHENEVSQLLEGNSLVLRQEE 415
D + F NDEN + S V ++NEV + N L
Sbjct: 459 SD-----QHTFFS----------NDENIFVPEERSSVN--YDNEV---VSSNLLTCDDLG 498
Query: 416 GSCCDGVEEVDKDITPDNKVGTSSN-----------QKDQFIWLDDYKCSLCGTEMPPSF 464
G+ DG K +T K S+ + +Q W+D Y CSLCG E+PP F
Sbjct: 499 GTKLDGNTSNSK-VTQSEKFDDLSHFTSCKASASSSKPNQQFWVDGYICSLCGFELPPCF 557
Query: 465 IEERQEHSDFHLAERLQKEESGSDLRILTHRERCVRTQRDHIASHRKRKKQKLFEKEGTH 524
EERQEHSDFHLAE LQ+EE+ LT +ER Q +K K KEG H
Sbjct: 558 EEERQEHSDFHLAELLQQEEALDSSGHLT-KERLAERQSTTPTPKKKLKSS----KEGKH 612
Query: 525 IPIDMFFAKRNRNF 538
IPID FF K N+
Sbjct: 613 IPIDSFFLKHNKKL 626
>gi|8569099|gb|AAF76444.1|AC015445_11 Contains similarity to DINP protein from Homo sapiens gb|AF194973
and contains an IMS PF|00817 domain [Arabidopsis
thaliana]
Length = 435
Score = 484 bits (1247), Expect = e-134, Method: Compositional matrix adjust.
Identities = 233/288 (80%), Positives = 257/288 (89%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVRAAMPGFIARKLCP+LIFVP DFTKYT+YSDLTRKVF YDP+F+A SLDEAYL
Sbjct: 145 ARKFGVRAAMPGFIARKLCPDLIFVPVDFTKYTHYSDLTRKVFRNYDPHFIAGSLDEAYL 204
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
DITEVCRERG+SG EIAEELR+SVY E GLTCSAGVA NRLLAKVCSDINKPNGQFVL N
Sbjct: 205 DITEVCRERGLSGGEIAEELRSSVYSETGLTCSAGVAANRLLAKVCSDINKPNGQFVLQN 264
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
DR VMTF+S LP+RKIGGIGKVTEHIL+D GI TCEEM+QKGSLL A+FS S+ADFFL
Sbjct: 265 DRSTVMTFVSFLPVRKIGGIGKVTEHILKDALGIKTCEEMVQKGSLLYALFSQSSADFFL 324
Query: 188 SVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTL 247
SVGLGLG TNTPQ R RKSISSERTF+ T D+ LLY KL E+AEMLS DM+KEGL RTL
Sbjct: 325 SVGLGLGGTNTPQVRSRKSISSERTFAATGDERLLYSKLDELAEMLSHDMKKEGLTARTL 384
Query: 248 TLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIG 295
TLKLKTASFE+R+RAV+LQ+Y SS+DILKHA+ LLKAELPVS+RLIG
Sbjct: 385 TLKLKTASFEIRSRAVSLQRYTCSSDDILKHATKLLKAELPVSVRLIG 432
>gi|302775514|ref|XP_002971174.1| hypothetical protein SELMODRAFT_441472 [Selaginella moellendorffii]
gi|300161156|gb|EFJ27772.1| hypothetical protein SELMODRAFT_441472 [Selaginella moellendorffii]
Length = 561
Score = 392 bits (1007), Expect = e-106, Method: Compositional matrix adjust.
Identities = 191/314 (60%), Positives = 243/314 (77%), Gaps = 6/314 (1%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVRAAMPGFIA KLCP+L+ + +F KYT+YS+LTR+VF YD NF+A SLDEAYL
Sbjct: 152 ARKFGVRAAMPGFIACKLCPDLVLIKPNFEKYTHYSELTRQVFRLYDKNFIARSLDEAYL 211
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
DITE CR I+ E+AE LR V+E+ LTCSAGVA NRLLAKVCSDINKPNGQFVL +
Sbjct: 212 DITEFCRTESIAPAEVAERLRKDVFEKTKLTCSAGVAANRLLAKVCSDINKPNGQFVLES 271
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
DR +M F+S LPIRK+ GIGKVTE +L+DV IN C ++++ L+ A+FS + DFFL
Sbjct: 272 DREKIMEFVSKLPIRKVSGIGKVTERLLKDVLSINMCSDLIENRYLISALFSTISTDFFL 331
Query: 188 SVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTL 247
SVGLG+G++ P RKSIS+ERTFS T D +L + L ++AE LS DM KE L+GRTL
Sbjct: 332 SVGLGIGASEAPHEEQRKSISNERTFSPTSDANILGKILGDLAESLSEDMIKENLQGRTL 391
Query: 248 TLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQFNEDKVR 307
TLKLKT++FEVR+RAV++Q +ISS ++I A LLKAELP+SLRL+G+RV+QF ED
Sbjct: 392 TLKLKTSTFEVRSRAVSVQHFISSKKEIESLAIKLLKAELPISLRLLGVRVSQFKED--- 448
Query: 308 APSDPTQKTLTNFM 321
DP+QK++ +F+
Sbjct: 449 ---DPSQKSIASFL 459
Score = 46.6 bits (109), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 28/45 (62%)
Query: 447 WLDDYKCSLCGTEMPPSFIEERQEHSDFHLAERLQKEESGSDLRI 491
W D +CSLCG + + RQEH DFH A ++Q+++S + L +
Sbjct: 499 WTQDDRCSLCGERISSEYPTLRQEHEDFHFALKIQQQDSVNQLEV 543
>gi|302756981|ref|XP_002961914.1| hypothetical protein SELMODRAFT_403334 [Selaginella moellendorffii]
gi|300170573|gb|EFJ37174.1| hypothetical protein SELMODRAFT_403334 [Selaginella moellendorffii]
Length = 561
Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust.
Identities = 191/314 (60%), Positives = 243/314 (77%), Gaps = 6/314 (1%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVRAAMPGFIA KLCP+L+ + +F KYT+YS+LTR+VF YD NF+A SLDEAYL
Sbjct: 152 ARKFGVRAAMPGFIACKLCPDLVLIKPNFEKYTHYSELTRQVFRLYDKNFIARSLDEAYL 211
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
DITE CR I+ E+AE LR V+E+ LTCSAGVA NRLLAKVCSDINKPNGQFVL +
Sbjct: 212 DITEFCRTESIAPAEVAERLRKDVFEKTKLTCSAGVAANRLLAKVCSDINKPNGQFVLES 271
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
DR +M F+S LPIRK+ GIGKVTE +L+DV IN C ++++ L+ A+FS + DFFL
Sbjct: 272 DREKIMEFVSKLPIRKVSGIGKVTERLLKDVLSINMCSDLIENRYLISALFSTISTDFFL 331
Query: 188 SVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTL 247
SVGLG+G++ P RKSIS+ERTFS T D +L + L ++AE LS DM KE L+GRTL
Sbjct: 332 SVGLGIGASEAPHEEQRKSISNERTFSPTSDANILGKILGDLAESLSEDMIKENLQGRTL 391
Query: 248 TLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQFNEDKVR 307
TLKLKT++FEVR+RAV++Q +ISS ++I A LLKAELP+SLRL+G+RV+QF ED
Sbjct: 392 TLKLKTSTFEVRSRAVSVQHFISSKKEIESLAIKLLKAELPISLRLLGVRVSQFKED--- 448
Query: 308 APSDPTQKTLTNFM 321
DP+QK++ +F+
Sbjct: 449 ---DPSQKSIASFL 459
Score = 46.6 bits (109), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 28/45 (62%)
Query: 447 WLDDYKCSLCGTEMPPSFIEERQEHSDFHLAERLQKEESGSDLRI 491
W D +CSLCG + + RQEH DFH A ++Q+++S + L +
Sbjct: 499 WTQDDRCSLCGERISSEYPTLRQEHEDFHFALKIQQQDSVNQLEV 543
>gi|224060812|ref|XP_002300273.1| predicted protein [Populus trichocarpa]
gi|222847531|gb|EEE85078.1| predicted protein [Populus trichocarpa]
Length = 323
Score = 385 bits (988), Expect = e-104, Method: Compositional matrix adjust.
Identities = 184/207 (88%), Positives = 193/207 (93%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFGVRAAMPGFIARKLCPELIFVPTDF KYT+YS+LTRKVF KYDPNFMAASLDEA+L
Sbjct: 117 ARRFGVRAAMPGFIARKLCPELIFVPTDFKKYTHYSELTRKVFEKYDPNFMAASLDEAHL 176
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
DITEVC+ERG+S EIAEELR V EE GLTCSAGVAPNRLLAKVCSDINKPNGQFVL N
Sbjct: 177 DITEVCKERGMSCGEIAEELRKCVNEETGLTCSAGVAPNRLLAKVCSDINKPNGQFVLTN 236
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
DRMAVMTFISSLPIRKIGGIGKVTEHILRD FGI+TCEEMLQKG LLCA+FSHSTADFFL
Sbjct: 237 DRMAVMTFISSLPIRKIGGIGKVTEHILRDAFGISTCEEMLQKGGLLCALFSHSTADFFL 296
Query: 188 SVGLGLGSTNTPQARFRKSISSERTFS 214
SVGLG+G T+TPQ R RKSISSERTFS
Sbjct: 297 SVGLGIGKTDTPQVRSRKSISSERTFS 323
>gi|62319917|dbj|BAD93992.1| hypothetical protein [Arabidopsis thaliana]
Length = 402
Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust.
Identities = 209/407 (51%), Positives = 273/407 (67%), Gaps = 14/407 (3%)
Query: 133 MTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLG 192
MTF+S LP+RKIGGIGKVTEHIL+D GI TCEEM+QKGSLL A+FS S+ADFFLSVGLG
Sbjct: 1 MTFVSFLPVRKIGGIGKVTEHILKDALGIKTCEEMVQKGSLLYALFSQSSADFFLSVGLG 60
Query: 193 LGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLK 252
LG TNTPQ R RKSISSERTF+ T D+ LLY KL E+AEMLS DM+KEGL RTLTLKLK
Sbjct: 61 LGGTNTPQVRSRKSISSERTFAATGDERLLYSKLDELAEMLSHDMKKEGLTARTLTLKLK 120
Query: 253 TASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQFNEDKVRAPSDP 312
TASFE+R+RAV+LQ+Y SS+DILKHA+ LLKAELPVS+RLIGLR++QF E+ +R SDP
Sbjct: 121 TASFEIRSRAVSLQRYTCSSDDILKHATKLLKAELPVSVRLIGLRMSQFVEE-IRN-SDP 178
Query: 313 TQKTLTNFMTSGHASKKI--VGDQNSLGSDINDDCLIDDKETSVSLDVSETNNYEFGDPV 370
+Q T+T F+ +S++ + D +S D N +CL +D+ +VS ET++ D V
Sbjct: 179 SQGTITKFIVQKDSSRQAQDLDDNDSFDLDANKNCLSNDESGNVSFGSHETSSAHLKDVV 238
Query: 371 CDNSLPDLNDENCSFSNKISEVEKIHENEVSQLLEGNSLVLRQEEGSCCDGVEEVDKDIT 430
++ I E + + E Q+LEG+SL+ + +E C D +
Sbjct: 239 EYEERSQIDSGKV-----IPNQECMKKEERLQILEGDSLLKKYKE--CKPDTSHSMNDNS 291
Query: 431 PDNKVGTSSNQKDQFIWLDDYKCSLCGTEMPPSFIEERQEHSDFHLAERLQKEESGSDLR 490
+ + Q + W+D YKC LCG E+PPSF+EERQEHSDFHLA+RLQ EE+GS
Sbjct: 292 NATEAVSVFPQTEPLYWIDGYKCVLCGIELPPSFVEERQEHSDFHLAQRLQNEETGSSSS 351
Query: 491 ILTHRERCVRTQRDHIASHRKRKKQKLFEKEGTHIPIDMFFAKRNRN 537
+ R + ++ + + +K++ + HIPI FF K N+N
Sbjct: 352 TTPSKRRILGKEK---VNSKPKKQKPDQKDSSKHIPIHAFFTKSNQN 395
>gi|384251631|gb|EIE25108.1| DNA polymerase kappa [Coccomyxa subellipsoidea C-169]
Length = 494
Score = 302 bits (773), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 161/300 (53%), Positives = 212/300 (70%), Gaps = 13/300 (4%)
Query: 7 SARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAY 66
+AR+FGVR+AMPGFI R+LCPEL+FV +F KYT + +R VFC +DP+F A SLDEAY
Sbjct: 160 AARKFGVRSAMPGFIGRRLCPELLFVKPNFQKYTKAAAASRAVFCLFDPDFEAGSLDEAY 219
Query: 67 LDITEVCRE-------RGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 119
LDIT+ CR + +G +AEE+R V EE LTCS G+ PNRLLAKV SD+ KP
Sbjct: 220 LDITDYCRAHETTGNGKHGAGEAVAEEIRRRVREETLLTCSCGIGPNRLLAKVASDMRKP 279
Query: 120 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFS 179
+GQ+ +P + A+ F+ LPIRK+ GIGKV+E +L+ G+ C ++L K LL A+FS
Sbjct: 280 DGQYAIPGEHSAISRFVDPLPIRKVPGIGKVSEQVLK-ALGVEVCADLLAKRGLLAALFS 338
Query: 180 HSTADFFLSVGLGLGST--NTP---QARFRKSISSERTFSVTEDKALLYRKLAEIAEMLS 234
+ADFF+ VGLG+G T + P A RK IS ERTF+ A L K AE+AE L+
Sbjct: 339 PISADFFMEVGLGVGRTQHSAPVEDGAVGRKGISVERTFAALSTPADLEAKCAELAEKLA 398
Query: 235 ADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLI 294
D+ EGL+GRT+TLKLKT +FEVRTRA TL ++IS+SEDIL+ A LL+AELP+++RL+
Sbjct: 399 EDVTGEGLKGRTITLKLKTTNFEVRTRAATLSRHISASEDILREALRLLRAELPITIRLM 458
>gi|326668001|ref|XP_691219.4| PREDICTED: DNA polymerase kappa [Danio rerio]
Length = 902
Score = 288 bits (737), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 163/383 (42%), Positives = 216/383 (56%), Gaps = 72/383 (18%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFGVRAAMPGFIA+KLCP+L+ VPT+F KY S R++F +YDPNFM SLDEAYL
Sbjct: 156 ARRFGVRAAMPGFIAKKLCPDLVIVPTNFDKYRAVSAQVREIFSEYDPNFMPMSLDEAYL 215
Query: 68 DIT-------------------------EVCR-----ER--------------------- 76
DIT + CR ER
Sbjct: 216 DITEHLEQRKHWPDTMRTHKICDAKTESDACRSTSESERDELSPVLFEDSPSSSPSLSGA 275
Query: 77 -------GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDR 129
G S E E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +P +R
Sbjct: 276 DGKAEVFGTSAEEAVREMRFRIEQKTSLTASAGIAPNMMLAKVCSDKNKPNGQYRIPPER 335
Query: 130 MAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSV 189
VM F+ LP+RK+ G+GKVTE +L GI TC ++ Q+ +LL +FS ++ FL +
Sbjct: 336 QVVMDFMKDLPVRKVSGVGKVTEKMLA-ALGIVTCSQLGQQMALLSLLFSETSWHHFLHI 394
Query: 190 GLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTL 249
LGLGST + RKS+S+ERTF D Y E+ L+ D+Q+EGL+G+T+TL
Sbjct: 395 SLGLGSTYMERDSERKSMSTERTFGEMSDAGEQYSLCKELCHDLAQDLQREGLKGKTVTL 454
Query: 250 KLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQF-- 301
KLK FEV+T+A TLQ + + E+I A LLK E+ P+ LRL+G+RV+ F
Sbjct: 455 KLKNVKFEVKTKAFTLQYAVCTEEEIFAAAKDLLKVEIDSVSPQPLKLRLMGVRVSGFIS 514
Query: 302 NEDKVRAPSDPTQKTLTNFMTSG 324
EDK P QK++ F+ G
Sbjct: 515 TEDK-----KPLQKSIMGFLQKG 532
>gi|159487333|ref|XP_001701677.1| DNA polymerase kappa [Chlamydomonas reinhardtii]
gi|158280896|gb|EDP06652.1| DNA polymerase kappa [Chlamydomonas reinhardtii]
Length = 429
Score = 285 bits (730), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 149/300 (49%), Positives = 197/300 (65%), Gaps = 9/300 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFGVR+AMPGFI ++LCP+L+FV DF KYT + + R F + DP+F + LDEAYL
Sbjct: 130 ARRFGVRSAMPGFIGKRLCPKLVFVKPDFAKYTEAAAVVRGAFKQLDPDFESGGLDEAYL 189
Query: 68 DITEVCRERGISGIEIAEELRTSVYE-EAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP 126
D+T C SG E A ELR V E GLTCS GVA N++LAK+CSDINKP+GQ+VLP
Sbjct: 190 DVTGYCTRTATSGEEAATELRRLVKEVSGGLTCSVGVACNKMLAKICSDINKPDGQYVLP 249
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGS--LLCAVFSHSTAD 184
R AVM+F+ +LP+RKI IGKVTE +L+ V G++TC ++L S L +FS + A
Sbjct: 250 ASRAAVMSFLDTLPVRKIPCIGKVTEQVLQGVLGVSTCGQLLAPASRCRLPLLFSEAAAG 309
Query: 185 FFLSVGLGLG------STNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQ 238
FFL LGL T+T RK +S ERTF A ++ E L ADM
Sbjct: 310 FFLEAALGLAPTRHGPKTDTSVDPGRKGLSHERTFRNMSAPAEQEAMAKQLVEALVADMA 369
Query: 239 KEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRV 298
+EG+ GR +TLKLK ++FEV TRA T+ +++ + DIL LL+AE+PV+LRL+G+R+
Sbjct: 370 EEGIEGRNITLKLKLSTFEVHTRAATMPRHVRTVSDILPAVLRLLRAEMPVTLRLMGVRM 429
>gi|56160410|gb|AAV80819.1| polymerase kappa isoform 3 [Mus musculus]
Length = 772
Score = 285 bits (729), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 153/332 (46%), Positives = 213/332 (64%), Gaps = 15/332 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFGVRAAMPGFIA++LCP+LI VP +F KY S +++ +YDPNFMA SLDEAYL
Sbjct: 142 ARRFGVRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILAEYDPNFMAMSLDEAYL 201
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
+IT+ +ER + E + + + G G+APN +LAKVCSD NKPNGQ+ +
Sbjct: 202 NITQHLQER-----QDWPEDKRRYFIKMGNYLKIGIAPNTMLAKVCSDKNKPNGQYQILP 256
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
R AVM FI LPIRK+ GIGKVTE +L GI TC E+ Q+ +LL +FS ++ +FL
Sbjct: 257 SRSAVMDFIKDLPIRKVSGIGKVTEKMLM-ALGIVTCTELYQQRALLSLLFSETSWHYFL 315
Query: 188 SVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTL 247
+ LGLGST+ + RKS+S ERTFS Y E+ L+ D+QKEGL+GRT+
Sbjct: 316 HIALGLGSTDLARDGERKSMSVERTFSEISKTEEQYSLCQELCAELAHDLQKEGLKGRTV 375
Query: 248 TLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQF 301
T+KLK +FEV+TRA T+ IS++E+I A LL+ E+ P+ LRL+G+R++ F
Sbjct: 376 TIKLKNVNFEVKTRASTVPAAISTAEEIFAIAKELLRTEVNVGSPHPLRLRLMGVRMSTF 435
Query: 302 NEDKVRAPSDPTQKTLTNFMTSGHASKKIVGD 333
+ + R Q+++ F+ +G+ + GD
Sbjct: 436 SSEDDRKHQ---QRSIIGFLQAGNQALSSTGD 464
>gi|410923427|ref|XP_003975183.1| PREDICTED: DNA polymerase kappa-like [Takifugu rubripes]
Length = 756
Score = 282 bits (722), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 161/378 (42%), Positives = 220/378 (58%), Gaps = 66/378 (17%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++GVRAAMPGFIA+KLCP L+ VPT+F KY S R++F YDPNFM SLDEAYL
Sbjct: 141 ARKYGVRAAMPGFIAKKLCPNLVIVPTNFDKYRAVSSEIREIFADYDPNFMPMSLDEAYL 200
Query: 68 DITE------------------------------------------VCRERGISGIEI-- 83
D TE +C E S EI
Sbjct: 201 DFTEHLEKRQSWPDSLRDENNELPQETTPDVTDLSPVLFDDSPSSSLCCEDAGSAFEIFG 260
Query: 84 ------AEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFIS 137
E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ LP+ R AVM F+
Sbjct: 261 TSVEEAVREMRFRIEQKTLLTASAGIAPNMMLAKVCSDKNKPNGQYRLPSTREAVMEFVC 320
Query: 138 SLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTN 197
+LP+RK+ GIGKV+E +L + GI++C + QK +LL +FS + FL V LGLGS
Sbjct: 321 NLPVRKVSGIGKVSEKLL-NALGISSCSHLGQKMALLSLLFSETAWHHFLQVSLGLGSAF 379
Query: 198 TPQARFRKSISSERTF---SVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 254
P+ RKS+S+ERTF S E++ L R E+ E L+ D++KEGL+G+T+TLKLK
Sbjct: 380 IPRHEERKSMSTERTFKEMSAAEEQLSLCR---ELCEDLANDLKKEGLKGKTVTLKLKNV 436
Query: 255 SFEVRTRAVTLQKYISSSEDILKHASVLLKAE------LPVSLRLIGLRVTQFNEDKVRA 308
+FEV+TRA+TL ++++++I A LLK E P+ LRL+G+R++ F +
Sbjct: 437 NFEVKTRALTLSYPVATADEIFAVAKDLLKTERDNESPQPLRLRLMGVRISAFVSSDEK- 495
Query: 309 PSDPTQKTLTNFMTSGHA 326
P QK++ F+ G A
Sbjct: 496 --QPLQKSIVGFLNPGKA 511
>gi|56160408|gb|AAV80818.1| polymerase kappa isoform 2 [Mus musculus]
Length = 793
Score = 277 bits (708), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 155/349 (44%), Positives = 216/349 (61%), Gaps = 28/349 (8%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFGVRAAMPGFIA++LCP+LI VP +F KY S +++ +YDPNFMA SLDEAYL
Sbjct: 142 ARRFGVRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILAEYDPNFMAMSLDEAYL 201
Query: 68 DITEVCRERGISG-------IEIAEELRTSVYEEAGLTCS----------AGVAPNRLLA 110
+IT+ +ER I++ L+ ++ L S G+APN +LA
Sbjct: 202 NITQHLQERQDWPEDKRRYFIKMGNYLKIAMMT-LDLAASNLNLLRPAKPPGIAPNTMLA 260
Query: 111 KVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQK 170
KVCSD NKPNGQ+ + R AVM FI LPIRK+ GIGKVTE +L GI TC E+ Q+
Sbjct: 261 KVCSDKNKPNGQYQILPSRSAVMDFIKDLPIRKVSGIGKVTEKMLM-ALGIVTCTELYQQ 319
Query: 171 GSLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIA 230
+LL +FS ++ +FL + LGLGST+ + RKS+S ERTFS Y E+
Sbjct: 320 RALLSLLFSETSWHYFLHIALGLGSTDLARDGERKSMSVERTFSEISKTEEQYSLCQELC 379
Query: 231 EMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL--- 287
L+ D+QKEGL+GRT+T+KLK +FEV+TRA T+ IS++E+I A LL+ E+
Sbjct: 380 AELAHDLQKEGLKGRTVTIKLKNVNFEVKTRASTVPAAISTAEEIFAIAKELLRTEVNVG 439
Query: 288 ---PVSLRLIGLRVTQFNEDKVRAPSDPTQKTLTNFMTSGHASKKIVGD 333
P+ LRL+G+R++ F+ + R Q+++ F+ +G+ + GD
Sbjct: 440 SPHPLRLRLMGVRMSTFSSEDDRKHQ---QRSIIGFLQAGNQALSSTGD 485
>gi|56160422|gb|AAV80825.1| polymerase kappa isoform 9 [Mus musculus]
Length = 467
Score = 270 bits (690), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 144/293 (49%), Positives = 192/293 (65%), Gaps = 12/293 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFGVRAAMPGFIA++LCP+LI VP +F KY S +++ +YDPNFMA SLDEAYL
Sbjct: 142 ARRFGVRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILAEYDPNFMAMSLDEAYL 201
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
+IT+ +ER + E + + + G G+APN +LAKVCSD NKPNGQ+ +
Sbjct: 202 NITQHLQER-----QDWPEDKRRYFIKMGNYLKIGIAPNTMLAKVCSDKNKPNGQYQILP 256
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
R AVM FI LPIRK+ GIGKVTE +L GI TC E+ Q+ +LL +FS ++ +FL
Sbjct: 257 SRSAVMDFIKDLPIRKVSGIGKVTEKMLM-ALGIVTCTELYQQRALLSLLFSETSWHYFL 315
Query: 188 SVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTL 247
+ LGLGST+ + RKS+S ERTFS Y E+ L+ D+QKEGL+GRT+
Sbjct: 316 HIALGLGSTDLARDGERKSMSVERTFSEISKTEEQYSLCQELCAELAHDLQKEGLKGRTV 375
Query: 248 TLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLI 294
T+KLK +FEV+TRA T+ IS++E+I A LL+ E+ P+ LRL+
Sbjct: 376 TIKLKNVNFEVKTRASTVPAAISTAEEIFAIAKELLRTEVNVGSPHPLRLRLM 428
>gi|56160412|gb|AAV80820.1| polymerase kappa isoform 4 [Mus musculus]
Length = 453
Score = 270 bits (689), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 142/283 (50%), Positives = 188/283 (66%), Gaps = 6/283 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFGVRAAMPGFIA++LCP+LI VP +F KY S +++ +YDPNFMA SLDEAYL
Sbjct: 142 ARRFGVRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILAEYDPNFMAMSLDEAYL 201
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
+IT+ +ER + E + + + G G+APN +LAKVCSD NKPNGQ+ +
Sbjct: 202 NITQHLQER-----QDWPEDKRRYFIKMGNYLKIGIAPNTMLAKVCSDKNKPNGQYQILP 256
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
R AVM FI LPIRK+ GIGKVTE +L GI TC E+ Q+ +LL +FS ++ +FL
Sbjct: 257 SRSAVMDFIKDLPIRKVSGIGKVTEKMLM-ALGIVTCTELYQQRALLSLLFSETSWHYFL 315
Query: 188 SVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTL 247
+ LGLGST+ + RKS+S ERTFS Y E+ L+ D+QKEGL+GRT+
Sbjct: 316 HIALGLGSTDLARDGERKSMSVERTFSEISKTEEQYSLCQELCAELAHDLQKEGLKGRTV 375
Query: 248 TLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS 290
T+KLK +FEV+TRA T+ IS++E+I A LL+ E+ VS
Sbjct: 376 TIKLKNVNFEVKTRASTVPAAISTAEEIFAIAKELLRTEVNVS 418
>gi|303283178|ref|XP_003060880.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226457231|gb|EEH54530.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 424
Score = 268 bits (686), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 146/296 (49%), Positives = 198/296 (66%), Gaps = 8/296 (2%)
Query: 7 SARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAY 66
+AR+FGVR+AMPGFIA+KLCP+L+FV +DF KY +Y+ LTR+VF +YDP F A SLDEAY
Sbjct: 130 AARKFGVRSAMPGFIAKKLCPQLVFVDSDFAKYKHYASLTREVFKEYDPQFDAGSLDEAY 189
Query: 67 LDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP 126
L+I+ C + ++ ++AE LR V E+ LTCSAGVAP R LAKVCSD NKP+GQ V+
Sbjct: 190 LEISAYCAGKSMTPADVAEALRREVREKTKLTCSAGVAPTRRLAKVCSDANKPDGQMVIE 249
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFF 186
R AV +SSLP+RKIGG+GKV + L FGI TC ++L++ +L+ A+FS +DF
Sbjct: 250 PTRDAVAALLSSLPVRKIGGVGKVLDRTL-AAFGIATCGDLLRERALVVALFSEVQSDFL 308
Query: 187 LSVGLGLGSTNTP-----QARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEG 241
L V +G+G P A RKS+S ERTF+ T D L K+A +AE ++A + +E
Sbjct: 309 LGVAIGVGGEARPARPPGWAPQRKSLSQERTFAPTADARALAAKIAALAEEVAAGLAREN 368
Query: 242 LRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIG 295
L RT+TLK+K A FEV R +L + + ++ I A L + E SLRL+G
Sbjct: 369 LLTRTVTLKMKRADFEVAQRQTSLPRPTNDAQTISDAALRLFRGEKNTHGSLRLLG 424
>gi|409080276|gb|EKM80636.1| hypothetical protein AGABI1DRAFT_55621 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 619
Score = 268 bits (684), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 142/326 (43%), Positives = 196/326 (60%), Gaps = 6/326 (1%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++GVR+ M GF+A+KLCP+LI +P FT Y SD +F +YDPN + A DE YL
Sbjct: 145 ARKYGVRSGMAGFVAKKLCPDLILIPEHFTTYMETSDQVMSIFKRYDPNMLIAGCDEGYL 204
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
+IT C E +S + +E+R V+EE LT SAG+APN++LAK+CSD NKPNGQF L
Sbjct: 205 NITLHCEEHSVSAADCVQEMRRIVFEETKLTVSAGIAPNKMLAKICSDRNKPNGQFQLIP 264
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
DR ++ F+ L +RK+ GIG+V E +L + GI TC ++ + + + + L
Sbjct: 265 DRKTILAFMRELSVRKVFGIGRVNERLLESI-GIKTCGDIFTHRATIALMDKQFGLHYLL 323
Query: 188 SVGLGLGSTNT--PQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
LG+ S PQ RKSI SERTFS +D +L +KL IA L DM + G G+
Sbjct: 324 KTYLGISSNEVRPPQREERKSIGSERTFSPLDDGEVLLQKLEHIASELETDMARNGWAGK 383
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQFNEDK 305
T+TLK K +++V TRA +L +Y+SS ED+ L AE + LRLIGLRVT+ +
Sbjct: 384 TITLKYKLDTYQVFTRAKSLDRYVSSKEDLFSIGRKLFLAEGHLKLRLIGLRVTKLKD-- 441
Query: 306 VRAPSDPTQKTLTNFMT-SGHASKKI 330
+RAPS K T S H +K+
Sbjct: 442 LRAPSPAGIKKFFEATTSSAHTRRKL 467
>gi|443686513|gb|ELT89764.1| hypothetical protein CAPTEDRAFT_151315 [Capitella teleta]
Length = 674
Score = 265 bits (677), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 158/414 (38%), Positives = 234/414 (56%), Gaps = 47/414 (11%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFGVRAAMPGFIA+KLCP+L+ VPT+F KY S +++ +YDPN SLDEAYL
Sbjct: 162 ARRFGVRAAMPGFIAKKLCPDLVIVPTNFDKYRQVSKDVKEILLQYDPNMCPMSLDEAYL 221
Query: 68 DITEVCRER--------------------GISGIEIAEELRTSVYEEAGLTCSAGVAPNR 107
DIT+ ER G+ ++ +E+R + + LT SAG+APN
Sbjct: 222 DITQHLAERKNFDAEQKTFRTADGEQRMFGVDAEDVVQEIRFRIEVKTQLTASAGIAPNM 281
Query: 108 LLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM 167
+LAKVCSD NKPNGQ+++P +R AVM F+ LP+RK+ GIG+V+ +L G+ TC ++
Sbjct: 282 MLAKVCSDFNKPNGQYLIPFNRQAVMDFVKDLPVRKVCGIGRVSCSML-GAMGVVTCSDL 340
Query: 168 LQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLA 227
+K LL ++S + ++FL V G+GST+ + RKS+S+ERTF+ A L+ K
Sbjct: 341 FRKRGLLLKLYSAISFNYFLRVSAGVGSTSVQRGDDRKSMSTERTFAEINRPAELFAKCY 400
Query: 228 EIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTL-------QKYISSSEDILKHAS 280
E+ E L D++KE L+G+T+TLK+KT + VRT+A +L Q S++ D+L+
Sbjct: 401 ELCEALVEDLKKENLKGKTITLKIKTIKYIVRTKAHSLLNATQDVQLLYSTARDLLRTEI 460
Query: 281 VLLKAELPVSLRLIGLRVTQFNEDKVRAPSDPTQKTLTNFMTSGHASKKIVGDQNSLGSD 340
L E P+ LRL+G+R++ + + S TQ T+ + +K+ G+D
Sbjct: 461 RLCSPE-PLRLRLMGVRMSNLSP---ASKSSDTQITIHQMLKKSRGEQKLPFGAVVSGAD 516
Query: 341 INDDCLIDDKETSVSLDV--------------SETNNYEFGDPVCDNSLPDLND 380
++ K+ V D+ +E +N EF PVCD D D
Sbjct: 517 -RFLSFMEQKDPYVDEDLPGANAFPDEVPHTSTEKDNTEFICPVCDEHPEDCVD 569
>gi|260821886|ref|XP_002606334.1| hypothetical protein BRAFLDRAFT_67577 [Branchiostoma floridae]
gi|229291675|gb|EEN62344.1| hypothetical protein BRAFLDRAFT_67577 [Branchiostoma floridae]
Length = 493
Score = 264 bits (675), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 144/344 (41%), Positives = 197/344 (57%), Gaps = 57/344 (16%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++GVRAAMPGFI +KLCP+L+ VPT+F KY S R V +YDPNF SLDEAY+
Sbjct: 128 ARKYGVRAAMPGFIGKKLCPDLVIVPTNFDKYCAVSRQVRDVLGQYDPNFAPMSLDEAYM 187
Query: 68 DITEVCRER--------------------------------------------------G 77
D+T+ + R G
Sbjct: 188 DLTDYLKLRESLPEEMRTFYAHVEGCVSKKDSSTENHDEDGMLGETQTNVKMSETSVVFG 247
Query: 78 ISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFIS 137
E+ E+R + + LT SAG+APN +LAKVCSD NKPNGQF +P+DR A+M FI
Sbjct: 248 CDAEEVVREIRFRIEQRTRLTASAGIAPNMMLAKVCSDQNKPNGQFCIPSDRQAIMDFIR 307
Query: 138 SLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTN 197
+LP+RK+ GIGKV L + GI+TC + ++ ++L +FS ++ L V LGLG+T
Sbjct: 308 NLPVRKVCGIGKVMAQQL-NALGISTCTHLYEQRAVLSLLFSPVSSSHLLRVALGLGATR 366
Query: 198 TPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFE 257
+ RKS+S ERTFS A LYRK E+ E L+ D+Q EGL+GRT+T+KLKT +F+
Sbjct: 367 IERESERKSMSVERTFSELSKPADLYRKCWELCEALAKDLQDEGLKGRTITIKLKTVNFD 426
Query: 258 VRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIG 295
V+ R T+ + +SS ++I A LLK E+ P+ LRL+G
Sbjct: 427 VKQRGQTVPRAVSSMKEIYDVAEELLKMEIQQCQPQPLRLRLMG 470
>gi|255075437|ref|XP_002501393.1| predicted protein [Micromonas sp. RCC299]
gi|226516657|gb|ACO62651.1| predicted protein [Micromonas sp. RCC299]
Length = 410
Score = 262 bits (670), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 138/290 (47%), Positives = 193/290 (66%), Gaps = 3/290 (1%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+ GVR+AMPGF+A KLCP L+FV DF Y Y+ + R+V+ YD F SLDEAYL
Sbjct: 123 ARKAGVRSAMPGFVAVKLCPALVFVRQDFELYQKYAAMLREVWRVYDKEFDCGSLDEAYL 182
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+TE G+ G E+A +LR+ V + LTCSAGVAP R LAK+CSD NKPNGQFVL
Sbjct: 183 DVTEFMSRTGMDGGEVAAKLRSDVETKTRLTCSAGVAPTRRLAKICSDWNKPNGQFVLER 242
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
R AV++F+S LP+RK+GG+GKV E L F I TC ++ Q +++ AVF+ +T DF
Sbjct: 243 SREAVISFLSDLPVRKVGGVGKVLEGKL-SAFQIRTCGQLRQSLNVIAAVFTPATIDFLF 301
Query: 188 SVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTL 247
SV LG G+ P RK + ERTF+ T D + KL +AE ++ ++QKE L+ +T+
Sbjct: 302 SVALGTGTEQRPPDAQRKGLGHERTFAPTSDPRFIEAKLHGLAEDVAKELQKENLKAQTV 361
Query: 248 TLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV-SLRLIGL 296
TLK+K ++FEV R +T+ ++++ I + A +LL+ E P +LRL+G+
Sbjct: 362 TLKIKKSNFEVMQRQLTVPSS-NAAKVIAEAAILLLRKERPYGALRLVGV 410
>gi|320164110|gb|EFW41009.1| polymerase [Capsaspora owczarzaki ATCC 30864]
Length = 974
Score = 261 bits (667), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 144/326 (44%), Positives = 197/326 (60%), Gaps = 33/326 (10%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR+AMPG+I KLCPEL+ V +F KY S R++ +YDP+F AASLDEAYL
Sbjct: 395 ARKFGVRSAMPGYIGLKLCPELVIVRPNFEKYAQVSTQVREILAQYDPHFTAASLDEAYL 454
Query: 68 DITEVCRE---RGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFV 124
D+T R+ G+S ++ E+R + LT SAG+APN +LAK+CSD+NKPNGQ+
Sbjct: 455 DLTRHMRQVVPDGVSSADVVREIRGKIQAATQLTASAGIAPNGMLAKICSDLNKPNGQYH 514
Query: 125 LPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTAD 184
LP D + +F++ LP+RK+ GIGKVTE +L + GI TCE+M L +FS + D
Sbjct: 515 LPGDLEQLKSFVAKLPVRKVSGIGKVTERML-NGLGIVTCEDMFAHRYDLFQLFSPISFD 573
Query: 185 FFLSVGLGLGSTN-----------TPQARF----------RKSISSERTFSVTEDKALLY 223
FFL V LG GS+ TP A F RKSIS ERTF L
Sbjct: 574 FFLRVSLGAGSSRYEEAVKADAVATPTAAFGFGFAVPDNDRKSISVERTFREINTPTALL 633
Query: 224 RKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL 283
K E+ L+AD+ LRGRT+T+KLK F + TRA + Q+YISS+ ++ + AS +L
Sbjct: 634 AKCEELCHKLAADVNSCKLRGRTVTVKLKMVDFRMFTRAASSQRYISSASEMFELASKIL 693
Query: 284 KAEL--------PVSLRLIGLRVTQF 301
+ E+ P+ LRL+G+R++
Sbjct: 694 QDEIQQSERAGGPLRLRLMGVRLSAL 719
>gi|321460481|gb|EFX71523.1| hypothetical protein DAPPUDRAFT_31218 [Daphnia pulex]
Length = 429
Score = 260 bits (665), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 146/288 (50%), Positives = 186/288 (64%), Gaps = 9/288 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFGVRAAMPGFIA+KLCPEL+ VPT+F KYT S +KVF YDP F AASLDEAYL
Sbjct: 141 ARRFGVRAAMPGFIAKKLCPELVIVPTNFPKYTEVSRQVQKVFADYDPEFSAASLDEAYL 200
Query: 68 DITEVCRERGISGIEI-----AEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQ 122
D+T+ R SG E+ EE+R + E LT SAG+APN +LAKVCSD NKPNGQ
Sbjct: 201 DLTDFLCARKESGAEMTASEAVEEMRAKILESTQLTASAGIAPNGMLAKVCSDKNKPNGQ 260
Query: 123 FVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHST 182
F+L N + AV FI LPIRKI GIG VTE +L + GI+TC ++ + LL +FS S+
Sbjct: 261 FILGNSKEAVDEFIKDLPIRKISGIGNVTEQLLGSL-GISTCRDLWNQRELLYLLFSESS 319
Query: 183 ADFFLSVGLGLGSTNTPQA---RFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQK 239
D+FL V LG+GS R RKS+S E TF T D+ L + +++ L+ D+++
Sbjct: 320 YDYFLRVALGIGSGGGGGDGSERERKSVSCETTFRSTSDRNELCDIIRQLSADLARDLER 379
Query: 240 EGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL 287
G GR++TLK KT F+V+TR L Y E + K A+ LL + L
Sbjct: 380 HGRLGRSVTLKYKTDKFDVKTRITQLTGYTGDGEVMAKAATSLLPSGL 427
>gi|405974456|gb|EKC39099.1| DNA polymerase kappa [Crassostrea gigas]
Length = 1422
Score = 259 bits (662), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 146/365 (40%), Positives = 211/365 (57%), Gaps = 37/365 (10%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVRAAMPGFI +KLCPEL+ VP F KYT S R++ +DPN+ SLDEAYL
Sbjct: 731 ARKFGVRAAMPGFIGKKLCPELVIVPPHFDKYTSVSKEVREILATFDPNYCTVSLDEAYL 790
Query: 68 DITE---------------VCR-----ERGISGIEIAEELRTSVYEEAGLTCS------A 101
D T+ +CR ++ ++ E L SV E L
Sbjct: 791 DFTDHMTKRSGLSEKERTVICRNCDSFDKSFCLCDLNETLGLSVCENGTLKVKDRPSDVC 850
Query: 102 GVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGI 161
G+APN +LAKVCSD+NKPNGQ+++P+ VM+FI LPIRKI GIGKV+E +L + +
Sbjct: 851 GIAPNMMLAKVCSDMNKPNGQYIIPSTVEDVMSFIRKLPIRKISGIGKVSERML-NAVEV 909
Query: 162 NTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL 221
TC+++ K LL ++S + ++F+ + LG+GST + RKS+S+ERTFS
Sbjct: 910 KTCQDLYDKRGLLYHLYSQISFNYFMRICLGIGSTTVERDGERKSMSTERTFSEMSAPTE 969
Query: 222 LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASV 281
LY K E+ L+ D+Q E L+G+T+++K+KT F+V+TRA +L Y + +E I A
Sbjct: 970 LYSKCLELCHSLAEDLQSEALKGKTVSIKIKTVKFDVKTRAFSLPDYTNDAEVIYIAAKD 1029
Query: 282 LLKAEL------PVSLRLIGLRVTQFNEDKVRAPSDPTQKTLTNFMTSGHASKKIVGDQN 335
LL E+ P+ LRL+G+R++ D+ + Q TL F+ G +KI ++
Sbjct: 1030 LLCKEMKNVHPHPLQLRLMGVRMSTLV-DQTLLSNKKQQNTLIQFVKKG---EKIGKNET 1085
Query: 336 SLGSD 340
G D
Sbjct: 1086 HQGKD 1090
>gi|308805837|ref|XP_003080230.1| DNA-directed polymerase kappa; AtPOLK (ISS) [Ostreococcus tauri]
gi|116058690|emb|CAL54397.1| DNA-directed polymerase kappa; AtPOLK (ISS) [Ostreococcus tauri]
Length = 605
Score = 259 bits (662), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 138/323 (42%), Positives = 205/323 (63%), Gaps = 14/323 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVRAAMPGFIA+KLCPEL+FV DFTKY S +R VF +Y+P+++A SLDEAY+
Sbjct: 207 ARKFGVRAAMPGFIAKKLCPELVFVKPDFTKYVKASKESRSVFAQYNPDYIAGSLDEAYI 266
Query: 68 DITEVCRERGISGIEIAEELRTSV-YEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP 126
++TE C+E + IA E+R V GLTCS G A +R LAKVCSD NKP+GQ++L
Sbjct: 267 EVTEYCKEHDTTMEAIAAEIREKVKAATGGLTCSVGGACSRRLAKVCSDFNKPDGQYILE 326
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFF 186
R A +TF+ LP+RK+ GIGK E +L + F I TC ++L K +L+ A+F+ + +
Sbjct: 327 PSREAALTFLRDLPVRKMYGIGKTLERVLNE-FDIETCGDLLDKRALMLALFTPKSFEHL 385
Query: 187 LSVGLGLGSTNTPQAR-----FRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEG 241
+ + LG+G+ P+ RK +S TF+ T DK L K+ E+A M++ + Q+
Sbjct: 386 IGIALGVGTERHPREEPDGIAPRKGVSKSETFAATSDKTFLDAKMTEMATMVALECQRLN 445
Query: 242 LRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAE----LPVSLRLIGLR 297
L+GR + +KLK ++F+V R TL + + I+ A L++ E + ++LRL+G R
Sbjct: 446 LKGRMVAVKLKRSTFDVIQRQTTLAGPTNDVKTIVNSALRLMRNENSIGVDMTLRLVGAR 505
Query: 298 VTQFNEDKVRAPSDPTQKTLTNF 320
V+QF+ ++ P D QK + +
Sbjct: 506 VSQFDHEEA-VPED--QKRIDTY 525
>gi|449683767|ref|XP_002159424.2| PREDICTED: DNA polymerase kappa-like [Hydra magnipapillata]
Length = 640
Score = 258 bits (660), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 140/331 (42%), Positives = 204/331 (61%), Gaps = 22/331 (6%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARR+GVRAAMPGFIA+KLCP+L VP F KY S +++F +YD N++ SLDEAYL
Sbjct: 174 ARRYGVRAAMPGFIAKKLCPQLTIVPLHFEKYQQVSLEIQEIFKEYDSNYLQLSLDEAYL 233
Query: 68 DITEVCRERG-ISGIE--------IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINK 118
D+T+ + +S + + EE+R+ V+E+ LTCSAG+APN +L+K+CSD NK
Sbjct: 234 DLTDYIKNNAPVSEFQTEKDFVEIVVEEIRSKVFEKTKLTCSAGIAPNTMLSKICSDFNK 293
Query: 119 PNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 178
PNGQF L +D + F+ +LPIRKI GIG VTE IL+ F I TC ++ +K ++L +F
Sbjct: 294 PNGQFYLKSDYQIISNFVKALPIRKIVGIGHVTEQILKS-FKILTCNDLYEKRNILYLLF 352
Query: 179 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQ 238
S ST F+ LG+ S Q+ RKS+S ERTF + L + ++AE L+ D+
Sbjct: 353 SESTFMSFMQTALGISSNRLEQSE-RKSMSVERTFQDMSNIEDLLKVCKDVAENLANDLS 411
Query: 239 KEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELP------VSLR 292
+E L GRT++LK K ++F + R+ T + IS++ED+ + LL E+ LR
Sbjct: 412 REKLGGRTISLKYKLSTFVTKQRSKTFSELISNAEDLFTISKELLLNEIKNHKNGGFVLR 471
Query: 293 LIGLRVTQFNEDKVRAPSDPTQKTLTNFMTS 323
L+G+RVT + K + QKT+ +F +
Sbjct: 472 LLGIRVTHLDNQK-----NFKQKTVDHFFNN 497
>gi|336384514|gb|EGO25662.1| hypothetical protein SERLADRAFT_437387 [Serpula lacrymans var.
lacrymans S7.9]
Length = 890
Score = 258 bits (659), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 131/308 (42%), Positives = 189/308 (61%), Gaps = 6/308 (1%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++GVR+ MPGFIA+KLCPELI V +FT+Y SD +F +YDPN +AA DE YL
Sbjct: 385 ARKYGVRSGMPGFIAKKLCPELILVNINFTRYQEMSDKVMDIFRRYDPNMLAAGCDEGYL 444
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
+IT C E + +E+R V++E LT SAG+APN++LAK+CSD NKPNGQF LP
Sbjct: 445 NITAYCEEHNLDPQACVQEMRAFVHKETNLTVSAGIAPNKMLAKICSDKNKPNGQFYLPF 504
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
DR ++ +F+ LPIR+I G+G+V E +L D GI TC ++ + L + F L
Sbjct: 505 DRESIKSFMQDLPIRRIPGVGRVNERLL-DAIGIKTCGDIYTHRATLSLMDKQFGLQFLL 563
Query: 188 SVGLGLGSTNT-PQARFRKSISSE----RTFSVTEDKALLYRKLAEIAEMLSADMQKEGL 242
+ LG+ S P R + I+S RTFS D+ + KL E+A L D ++ G
Sbjct: 564 RIHLGIASNVVEPGKREERKIASAKVHFRTFSTLSDRQQILNKLEEVAAELEDDTERNGW 623
Query: 243 RGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQFN 302
G+T+TLK K +++V TRA + ++IS+ +D L L P+S+RLIGLR+T+
Sbjct: 624 TGKTVTLKYKLNTYQVYTRAKSFDRWISTKKDDLLAIGKELLPSHPLSIRLIGLRITKLK 683
Query: 303 EDKVRAPS 310
+ + +P+
Sbjct: 684 DLRSSSPA 691
>gi|116200590|ref|XP_001226107.1| hypothetical protein CHGG_10840 [Chaetomium globosum CBS 148.51]
gi|88175554|gb|EAQ83022.1| hypothetical protein CHGG_10840 [Chaetomium globosum CBS 148.51]
Length = 632
Score = 256 bits (655), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 135/300 (45%), Positives = 191/300 (63%), Gaps = 7/300 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG R+ M GF+A+KLCPELI +P +F KY + R++ +YDP F +AS+DEAYL
Sbjct: 165 ARKFGCRSGMAGFVAKKLCPELILLPLNFDKYNAKAAEVREILAEYDPRFESASIDEAYL 224
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
+ITE C E + ++ +LR+ ++E+ +T SAG+A N LAK+CS++NKPNGQFVLP
Sbjct: 225 NITEYCAEHDMDPADVVSKLRSEIHEKTHITVSAGIAANARLAKICSNMNKPNGQFVLPR 284
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
DR+A+M+F+ L R++ GIG+V E L V GI TC ++ + L +F +F L
Sbjct: 285 DRVAIMSFMRDLSCRQVNGIGRVLERELASV-GIKTCGDIYAQRQYLDRLFGQKAYEFLL 343
Query: 188 SVGLGLGSTNTPQAR--FRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
LGLG TN A RKS+ +ERTF D ALL KL AE L +DM+K +GR
Sbjct: 344 HCHLGLGRTNIQPAEDYERKSVGTERTFRDLGDPALLREKLRRTAEELESDMRKAECKGR 403
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLRLIGLRVTQF 301
TL LK+K +FEV TR V K + ++D+ ++ + L+ E+P + LRL+GLR TQ
Sbjct: 404 TLCLKVKLHTFEVLTRQVVPPKAVHLADDLYNYSLPMLAKLEQEIPGMKLRLMGLRCTQL 463
>gi|393217821|gb|EJD03310.1| DNA/RNA polymerase [Fomitiporia mediterranea MF3/22]
Length = 600
Score = 255 bits (652), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 133/303 (43%), Positives = 188/303 (62%), Gaps = 7/303 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+ GVR+ M GF+A+KLCPELI +P +F KY+ S +F +YDP + A DE YL
Sbjct: 135 ARKHGVRSGMAGFVAKKLCPELIVIPVNFEKYSEMSRKVMSIFKEYDPTMIVAGCDEGYL 194
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
+IT+ C + GIS + +E+R V+EE LT SAG+A N K+CSD NKPNGQF LP+
Sbjct: 195 NITKYCAQHGISPEDCVKEMRQKVHEETKLTASAGIASN----KICSDKNKPNGQFALPS 250
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
+R A+ F+ L IRK+ G+G+V E +L D G+ TC ++ +++ + + + F
Sbjct: 251 ERDAITAFMRDLSIRKLPGVGRVHERLL-DSIGVKTCGDIYAHRAVIWLMDHYFSKIFLY 309
Query: 188 SVGLGLGSTNT-PQAR-FRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
S LG+ S P R RKSI +ERTF+ D L KL E+AE L DM+ G G+
Sbjct: 310 SAYLGIASNVVEPYQRDERKSIGAERTFTPISDHEKLLEKLEEVAEELENDMRDNGWAGK 369
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQFNEDK 305
T+TLK K +++V TRA + ++I+ ED+ LLK ELP+ LRLIGLRVT+ + +
Sbjct: 370 TVTLKYKLNTYQVYTRAKSFNRWITRKEDLFNTGKELLKPELPLCLRLIGLRVTKLKDLR 429
Query: 306 VRA 308
RA
Sbjct: 430 ARA 432
>gi|156046767|ref|XP_001589745.1| hypothetical protein SS1G_09467 [Sclerotinia sclerotiorum 1980]
gi|154693862|gb|EDN93600.1| hypothetical protein SS1G_09467 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 562
Score = 255 bits (651), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 141/336 (41%), Positives = 202/336 (60%), Gaps = 19/336 (5%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFGVR+AM GFIA+KLCP+LI VP +F KYT + R + YDP F +AS+DEAYL
Sbjct: 145 ARRFGVRSAMAGFIAKKLCPQLIQVPLNFDKYTAKAQEVRGILVDYDPRFESASIDEAYL 204
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
+ITE C++ I E+LR V+E+ +T SAG+A N +AK+CS+ NKPNGQ+ +PN
Sbjct: 205 NITEYCQKNDIDPEAAVEQLRREVHEKTKVTISAGIAANAKIAKICSNKNKPNGQYRVPN 264
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
DR+ +M F+ LP RK+ GIG+V E L G++TC ++ L +F T F +
Sbjct: 265 DRIEIMRFMRDLPTRKVNGIGRVFEREL-GAIGVDTCGDIYNVRQYLPKLFGDKTFIFLM 323
Query: 188 SVGLGLGSTNTPQAR--FRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
LGLG T+ A RKS+ +E TF +D L KL + AE L DMQ+ +GR
Sbjct: 324 QCYLGLGRTDVKPAEEYTRKSVGTESTFGDMDDPTELRAKLRQTAEELEKDMQRTQFKGR 383
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLRLIGLRVTQF 301
TL LK+K ++EV TR K + S++D+ ++ + L+AE+P +SLRL+GLR T
Sbjct: 384 TLVLKVKLKTYEVLTRQAAPSKAVCSADDLYTYSLPMLEKLEAEIPGMSLRLMGLRCT-- 441
Query: 302 NEDKVRAP----------SDPTQKTLTNFMTSGHAS 327
N ++ P DPT+ ++N+ + +S
Sbjct: 442 NLVSIKKPDTMAFFGFRKQDPTENGISNYESKSFSS 477
>gi|378725578|gb|EHY52037.1| DNA polymerase kappa subunit [Exophiala dermatitidis NIH/UT8656]
Length = 732
Score = 254 bits (648), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 134/300 (44%), Positives = 187/300 (62%), Gaps = 7/300 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG R+AM GF+A+KLCP+LI +P +F KYT + R + +YDP F +AS+DEAYL
Sbjct: 176 ARKFGCRSAMAGFVAKKLCPQLICLPLNFDKYTAKAKEVRAILAEYDPRFESASIDEAYL 235
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
+ITE C I E+LR V+E+ +T SAG+APN LAK+CS+ NKPNGQF LPN
Sbjct: 236 NITEYCHTHDIDPDAAVEQLRGEVHEKCQITISAGIAPNAKLAKICSNKNKPNGQFRLPN 295
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
DR AVM+FIS+LP+RK+ G+G+V E L D GI TC ++ + L +F F +
Sbjct: 296 DRAAVMSFISTLPVRKVNGVGRVFEREL-DAIGIKTCGDIYPHRAYLNRLFGEKAFQFLM 354
Query: 188 SVGLGLGSTNT-PQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
+GLG T P + RKS+ +E TF K L KL AE L DM++ G++GR
Sbjct: 355 QTYMGLGRTVVQPAEEYERKSVGTESTFREMSGKQELREKLRHTAEELEKDMERVGVKGR 414
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLRLIGLRVTQF 301
TL LK+K ++EV TR V + + +ED+ ++ + L+ ++P LRL+GLR T
Sbjct: 415 TLVLKVKLHTYEVFTRQVAPPRAVHRAEDLYTYSLPMLAKLEKDIPDFRLRLMGLRCTHL 474
>gi|380492100|emb|CCF34847.1| impB/mucB/samB family protein [Colletotrichum higginsianum]
Length = 639
Score = 253 bits (647), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 137/331 (41%), Positives = 200/331 (60%), Gaps = 12/331 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++G R+ M GF+A+KLCPEL+ + +F KYT + R+V +YDP F +AS+DEAYL
Sbjct: 154 ARKYGCRSGMAGFVAKKLCPELVMLKLNFEKYTAKAHEVREVLVEYDPRFESASIDEAYL 213
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
+ITE C E+GI E E++R ++E+ +T SAG+A N LAK+CS++NKPNGQF+LPN
Sbjct: 214 NITEYCTEKGIGPAEAVEQMRREIHEKTKITVSAGIAANAKLAKICSNMNKPNGQFILPN 273
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
DR ++ F++ LP RK+ GIG+V E L ++ GINTC ++ + L +F +F L
Sbjct: 274 DRSEILRFMAKLPPRKVNGIGRVLERQLAEI-GINTCADLYPQRQFLRPLFGDKAYEFLL 332
Query: 188 SVGLGLGSTN-TPQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
+V LGLG T P + RKS+ +E TF D L KL A+ L DM++ ++GR
Sbjct: 333 NVYLGLGRTRIQPAEEYERKSVGTESTFRDMSDPQQLREKLRWTADELEKDMKRAEVKGR 392
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL---KAELP-VSLRLIGLRVTQF 301
TL LK+K ++EV TR V L + I ++D+ + +L + E+P ++LRL+GLR T
Sbjct: 393 TLVLKVKLHTYEVFTRQVVLPRAICLADDLYHFSLPILSKIEEEMPGMTLRLMGLRCTHL 452
Query: 302 NEDKVRAPSDPTQKTLTNFMTSGHASKKIVG 332
K P F + G S G
Sbjct: 453 VSTK-----KPDTMAFFGFRSRGSGSAASPG 478
>gi|310795414|gb|EFQ30875.1| impB/mucB/samB family protein [Glomerella graminicola M1.001]
Length = 635
Score = 253 bits (647), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 142/349 (40%), Positives = 207/349 (59%), Gaps = 18/349 (5%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++G R+ M GF+A+KLCPEL+ + +F KYT + R+VF +YDP F +AS+DEAYL
Sbjct: 154 ARKYGCRSGMAGFVAKKLCPELVMLKLNFEKYTAKAHEVREVFVEYDPRFESASIDEAYL 213
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
+ITE C ++GI E E++R +YE+ +T SAG+A N LAK+CS++NKPNGQF+LPN
Sbjct: 214 NITEYCTDKGIGPAEAVEQMRREIYEKTKITVSAGIAANAKLAKICSNMNKPNGQFILPN 273
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
DR ++ F++ LP RK+ G+G+V E L ++ GI TC ++ + L +F +F +
Sbjct: 274 DRSEILRFMAKLPPRKVNGVGRVLERQLAEI-GIKTCADLYPQRQFLRPLFGEKAYEFLI 332
Query: 188 SVGLGLGSTNT-PQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
+V LGLG T P + RKS+ +E TF D L KL A L DM++ ++GR
Sbjct: 333 NVYLGLGRTRIQPAEEYERKSVGTESTFRDMSDPQQLREKLKWTAGELEKDMKRAEVKGR 392
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLRLIGLRVTQF 301
TL LK K ++EV TR V L + I ++D+ A + L+ E+P ++LRL+GLR T
Sbjct: 393 TLVLKAKLHTYEVLTRQVVLPRAIFLADDLYHFALPILAKLQEEMPGMTLRLMGLRCTHL 452
Query: 302 NEDKVRAPSDPTQKTLTNFMT----SGHASKKIVGDQNSLGSD--INDD 344
K P F + SG + K D + G D +NDD
Sbjct: 453 VSTK-----KPDTMAFFGFRSRRSESGTSPVKPSKDNVNAGVDSGLNDD 496
>gi|146182193|ref|XP_001470638.1| DNA polymerase IV / kappa [Tetrahymena thermophila]
gi|146143895|gb|EDK31392.1| DNA polymerase IV / kappa [Tetrahymena thermophila SB210]
Length = 950
Score = 252 bits (644), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 128/300 (42%), Positives = 184/300 (61%), Gaps = 7/300 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR+AMPGFIA+KLCP+LI +P +F KY SD +KV +YDPN + LDEA L
Sbjct: 146 ARKFGVRSAMPGFIAKKLCPQLILIPCNFEKYRKASDQFKKVLYQYDPNLESMGLDEANL 205
Query: 68 DITEVCRERGISG----IEIAEELRTSVYEE-AGLTCSAGVAPNRLLAKVCSDINKPNGQ 122
DIT+ ++ I+ ++ +R V+E GLTCS G+ PN++LAK+CSD+NKPNGQ
Sbjct: 206 DITDYLQQNNINSDAQIYDLCHSIRNQVFESTGGLTCSCGIGPNKMLAKICSDMNKPNGQ 265
Query: 123 FVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHST 182
F L ND + F+ LPIRKI GIG VTE IL+ + GI C ++L++ + F +
Sbjct: 266 FQLINDEEKIKDFMKDLPIRKIPGIGNVTEQILKGI-GIEKCSQILERVIDIKICFKDLS 324
Query: 183 ADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGL 242
D +S LG+G + + +KS+S RTF + K+ +I+++L+ D + E
Sbjct: 325 FDHLVSSALGIGRSWHEEETEKKSLSVSRTFQAISTIEEINEKIHQISQLLAEDAKAEQK 384
Query: 243 RGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS-LRLIGLRVTQF 301
G+ L + K F++R++ L KYI SE I K A L+K LP LRLIG+R++Q
Sbjct: 385 IGKHLAVSFKNVKFQMRSKNRMLDKYIQDSEQIEKVAKELVKELLPTEPLRLIGIRLSQL 444
>gi|451997376|gb|EMD89841.1| hypothetical protein COCHEDRAFT_1177859 [Cochliobolus
heterostrophus C5]
Length = 606
Score = 251 bits (641), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 131/300 (43%), Positives = 187/300 (62%), Gaps = 7/300 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG R+ M GF+A KLCP+LI VP +F KYT ++ R+V YDPNF +AS DEAYL
Sbjct: 165 ARKFGCRSGMAGFVAMKLCPQLICVPMNFQKYTAKAEEVRQVLALYDPNFESASCDEAYL 224
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
++TE C E ++ E ++R VYE+A +T SAG+A N LAK+CS+INKPNGQF+LP+
Sbjct: 225 NLTEYCNEHRMTAEEAVRQMRADVYEKAKITVSAGIAANAKLAKICSNINKPNGQFLLPS 284
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
DR +M F+ +LP RK+ GIG+V E L D G+ TC ++ + L +F F +
Sbjct: 285 DRQTIMDFMRTLPTRKVNGIGRVFEREL-DAIGVKTCGDIYAHRAYLAKLFGQKAFQFLM 343
Query: 188 SVGLGLGSTNTPQAR--FRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
LGLG T +A RKS+ +E TF + L KL +AE L D+++ +GR
Sbjct: 344 QCYLGLGRTVIKRAEDYERKSVGTETTFKELQSPDALREKLRFVAEELEGDLKRTEYKGR 403
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK---AELP-VSLRLIGLRVTQF 301
TL +K+K ++EV TR T + +ED+ K++ +L+ E+P + LRL+GLRVT
Sbjct: 404 TLCIKIKLHTYEVHTRQTTPPFAVHKAEDLYKYSLPMLEKLMKEIPNMRLRLMGLRVTHI 463
>gi|452989492|gb|EME89247.1| hypothetical protein MYCFIDRAFT_213583 [Pseudocercospora fijiensis
CIRAD86]
Length = 663
Score = 251 bits (641), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 134/310 (43%), Positives = 191/310 (61%), Gaps = 8/310 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG R+ M GF+A KLCP+LI +P +F KYT + R V +YDP F +AS+DEAYL
Sbjct: 176 ARKFGCRSGMAGFVADKLCPQLIHIPLNFEKYTAKAKEVRAVLEQYDPRFESASIDEAYL 235
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
+IT C E IS + ++R V+EE +T SAG+A N LAK+CS+ NKPNGQF L +
Sbjct: 236 NITNYCEEHNISPEDAVSQMRAQVFEETMITISAGIAANAKLAKICSNKNKPNGQFKLAS 295
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
+R A+M F+ LP RK+ GIG+V E L D G+ TC ++ ++ L A+F T +F +
Sbjct: 296 ERTAIMNFMRDLPTRKVNGIGRVLEREL-DAIGVKTCGDIYEQRHYLNALFGDKTFEFLI 354
Query: 188 SVGLGLGSTNT-PQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
V LGLG T+ P A + RKS+ +E TF D L KL + AE L D+Q+ +GR
Sbjct: 355 GVHLGLGKTDVRPAAEYERKSVGTESTFHDMSDPKELRDKLRKTAEELEKDLQRTEFKGR 414
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK---AELP-VSLRLIGLRVTQF 301
TL LK+K ++EV TR + K + +++D+ + +L+ E P + LRL+GLR T
Sbjct: 415 TLCLKIKLHTYEVFTRQIQPPKAVHTADDLYHYGLAMLQKLEKEFPGMKLRLMGLRCTHL 474
Query: 302 NEDKVRAPSD 311
K + P+D
Sbjct: 475 VSMK-KGPTD 483
>gi|393217454|gb|EJD02943.1| DNA/RNA polymerase [Fomitiporia mediterranea MF3/22]
Length = 718
Score = 251 bits (640), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 129/306 (42%), Positives = 183/306 (59%), Gaps = 5/306 (1%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVRA P +IA++LCP+LI VP D+ + S+ V +YDPN A DEAYL
Sbjct: 148 ARKFGVRAGQPEYIAKRLCPDLILVPVDYKRVAVVSEKVMDVCKRYDPNMYIAGCDEAYL 207
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
+IT+ + +S E EELR+ + EE LT SAG+APN +LAK+CSD NKPNGQF +P
Sbjct: 208 NITKHLEDHKLSAAECVEELRSKICEETNLTASAGIAPNMMLAKICSDRNKPNGQFQMPF 267
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
R AVM F+ LP+RK+ GIG+V E +L + G+ TC ++ +++ + DF
Sbjct: 268 TREAVMEFMRDLPVRKVPGIGRVGERVL-EAIGVKTCGDIRAARAIIWLMPRKFAVDFLF 326
Query: 188 SVGLGLGST--NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
LGL T Q RKS+ RTF + K +++KL IA +L D++ EG G+
Sbjct: 327 ETHLGLAPTVVKPYQREERKSVGVSRTFRAVQTKEAIFQKLEYIASLLERDLETEGWVGK 386
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQFNEDK 305
+ L K +F V TR T +++IS ED+ L+K LP+ +RL+GLRVT +
Sbjct: 387 IVILTYKLDTFRVHTRRATFERWISKKEDLFNIGKDLIKPYLPLRVRLLGLRVTDLID-- 444
Query: 306 VRAPSD 311
+RAP+D
Sbjct: 445 LRAPTD 450
>gi|390602278|gb|EIN11671.1| IMS-domain-containing protein [Punctularia strigosozonata HHB-11173
SS5]
Length = 608
Score = 250 bits (639), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 137/324 (42%), Positives = 193/324 (59%), Gaps = 8/324 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR+ M GF+A+KLCPELI VP +Y+ S VF YDPN +AAS DE YL
Sbjct: 151 ARKFGVRSGMAGFVAKKLCPELILVPIHHERYSEISQRIMTVFRDYDPNMLAASCDEGYL 210
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
+IT C E + E +++R V+EE LT SAG+APN++LAK NKPNGQ+ LP
Sbjct: 211 NITSYCAEHDLDPDECVQQMRKRVHEEIKLTVSAGIAPNKMLAK-----NKPNGQYHLPF 265
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
+R + F+ LPIRKI GIG+V+E +L D G+ TC ++ + L + H + + L
Sbjct: 266 ERTEIRDFMRDLPIRKIPGIGRVSERLL-DSIGVKTCGDIYPHRATLSLLDKHFSLHWLL 324
Query: 188 SVGLGLGSTNT-PQAR-FRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
LG+ S P +R RKSI +ERTF+ ++ L +KL E+A L DM + G G+
Sbjct: 325 QTYLGIASNVVQPGSREERKSIGAERTFNPISNREKLLQKLDEVAHELEEDMTRGGWVGK 384
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQFNEDK 305
T+TLK K +S++V TRA + ++IS +D+ LL + P+ LRLIGLRVT+ + +
Sbjct: 385 TITLKYKLSSYQVFTRAKSFDRWISKKDDLFSARKELLLNDWPLELRLIGLRVTKLKDLR 444
Query: 306 VRAPSDPTQKTLTNFMTSGHASKK 329
D K +SG AS +
Sbjct: 445 AEEQGDAGIKRFLKPASSGPASPR 468
>gi|340518175|gb|EGR48417.1| hypothetical protein TRIREDRAFT_107805 [Trichoderma reesei QM6a]
Length = 649
Score = 250 bits (638), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 129/301 (42%), Positives = 187/301 (62%), Gaps = 7/301 (2%)
Query: 7 SARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAY 66
+AR+FG R+ M GF+A+KLCP+L+ + +F KY ++ R V YDP F +AS+DEAY
Sbjct: 167 AARQFGCRSGMAGFVAKKLCPQLVLIKPNFHKYGAKAEEVRAVLANYDPRFESASIDEAY 226
Query: 67 LDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP 126
L+ITE C + I + E++R V+E+ +T SAG+A N LAK+CS+INKPNGQ+VLP
Sbjct: 227 LNITEYCDQHDIDPAAVVEQMRIEVHEKTNITVSAGIAANARLAKICSNINKPNGQYVLP 286
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFF 186
DR A+M F+ LP RK+ G+G+V E L ++ G+ TC ++ ++ L +F T++F
Sbjct: 287 RDRSAIMAFMRDLPTRKVNGVGRVLERELLEI-GVKTCGDIYEQRQYLHRLFGDKTSEFL 345
Query: 187 LSVGLGLGSTN-TPQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRG 244
LGLG T P + RKS+ +E TF D L KL AE L DM++ +G
Sbjct: 346 FRCYLGLGRTKIQPAEEYERKSVGTESTFHDMSDPVQLRNKLRSTAEALEQDMRRSECKG 405
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLRLIGLRVTQ 300
RTL +K+K +FEV TR V L K I +ED+ ++ + L+ E+P + LRL+GLR T
Sbjct: 406 RTLCIKIKLHTFEVFTRQVILPKSIYLAEDLYNYSLPMLAKLEHEMPGMKLRLMGLRCTN 465
Query: 301 F 301
Sbjct: 466 L 466
>gi|451852315|gb|EMD65610.1| hypothetical protein COCSADRAFT_86898 [Cochliobolus sativus ND90Pr]
Length = 610
Score = 250 bits (638), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 130/300 (43%), Positives = 186/300 (62%), Gaps = 7/300 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG R+ M GF+A KLCP+LI VP +F KY ++ R+V YDPNF AS DEAYL
Sbjct: 151 ARKFGCRSGMAGFVAMKLCPQLICVPMNFQKYMAKAEEVRQVLALYDPNFENASCDEAYL 210
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
++T+ C E ++G E ++R VYE+A +T SAG+A N LAK+CS+INKPNGQF+LP+
Sbjct: 211 NLTKYCNEHHMTGEEAVSQMRADVYEKAKITVSAGIAANAKLAKICSNINKPNGQFLLPS 270
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
DR +M F+ +LP RK+ GIG+V E L D G+ TC ++ + L +F F +
Sbjct: 271 DRQTIMEFMKTLPTRKVNGIGRVFEREL-DAIGVKTCGDIYAHRACLAKLFGQKAFQFLM 329
Query: 188 SVGLGLGSTNTPQAR--FRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
LGLG T +A RKS+ +E TF + L KL +AE L D+++ +GR
Sbjct: 330 QCYLGLGRTVIKRAEDYERKSVGTETTFKELQSPDALREKLRFVAEELEGDLKRTEYKGR 389
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK---AELP-VSLRLIGLRVTQF 301
TL +K+K ++EV TR T + +ED+ K++ +L+ E+P + LRL+GLRVT
Sbjct: 390 TLCIKIKLHTYEVHTRQTTPPFAVHKAEDLYKYSLPMLEKLMKEIPNMRLRLMGLRVTHI 449
>gi|240977912|ref|XP_002402838.1| DNA polymerase IV / kappa, putative [Ixodes scapularis]
gi|215491234|gb|EEC00875.1| DNA polymerase IV / kappa, putative [Ixodes scapularis]
Length = 487
Score = 249 bits (637), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 152/355 (42%), Positives = 204/355 (57%), Gaps = 21/355 (5%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVRAAMPGFI +KLCP L+ V +F KY+ S RKV +YD +FM LDEAYL
Sbjct: 129 ARKFGVRAAMPGFIGKKLCPSLLIVRPNFNKYSSVSAEVRKVMARYDEDFMPVGLDEAYL 188
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
DIT+ +I E+R ++E LT A +APN LAKVCSDI KPN QF LPN
Sbjct: 189 DITDHVNATDADPEDIVREMRKKIFEATQLT--ARIAPNMFLAKVCSDIRKPNNQFRLPN 246
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
D AV F+ SLPIRK+ GIG V E +LR G TC ++ K + + +F ++A F+L
Sbjct: 247 DINAVREFVRSLPIRKVPGIGAVQEQLLR-ALGAQTCHDLWVKRAAIGHLFGMTSARFYL 305
Query: 188 SVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTL 247
LGLG T KS S E TFS L K E+ E L ++ +G+ GR +
Sbjct: 306 RAALGLGCTEVKCDSACKSKSVEETFSELSSPEALVSKCEELCEQLCEQVEDDGITGRVV 365
Query: 248 TLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL-------PVSLRLIGLRVTQ 300
TLK+KT +F+V TR+VTL + E I K A LL+ E+ P+ LRL+G+R++
Sbjct: 366 TLKIKTVAFDVMTRSVTLDSATNRIEPIKKAALRLLRQEIAAAKPDCPLRLRLMGVRLSG 425
Query: 301 FNEDKVRAPSDPTQKTLTNFMTSGHASKKIVGDQNSLGSD----IN---DDCLID 348
N+ A S +Q TL++F++ A+ V + +LGS +N D CL D
Sbjct: 426 LNDG---ASSSASQPTLSSFLSGRTATTCPVCGK-TLGSSSSEFVNAHLDSCLRD 476
>gi|358381543|gb|EHK19218.1| hypothetical protein TRIVIDRAFT_69218 [Trichoderma virens Gv29-8]
Length = 643
Score = 249 bits (635), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 131/300 (43%), Positives = 185/300 (61%), Gaps = 7/300 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG R+ M GF+A+KLCP+LI + +F KY + R V YDP F +AS+DEAYL
Sbjct: 166 ARQFGCRSGMAGFVAKKLCPQLILIKPNFHKYGAKAQEVRAVIANYDPRFESASIDEAYL 225
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
+ITE C E + + E++R V+E+ +T SAG+A N LAK+CS+INKPNGQ+VLP
Sbjct: 226 NITEYCDEHNMDPAAVVEQMRKEVHEKTSITVSAGIAANARLAKICSNINKPNGQYVLPR 285
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
DR ++M F+ LP RK+ GIG+V E L ++ G+ TC ++ ++ L +F + F L
Sbjct: 286 DRNSIMAFMRDLPTRKVNGIGRVLERELLEI-GVKTCGDLYEQRQYLNRLFGEKYSVFLL 344
Query: 188 SVGLGLGSTN-TPQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
LGLG T P + RKS+ +E TF D A L KL AE L D++K +GR
Sbjct: 345 RCYLGLGRTKIQPAEEYERKSVGTESTFHDISDPAKLRDKLRSTAEALEKDLKKNECKGR 404
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLRLIGLRVTQF 301
TL +K+K +FEV TR V L K I +ED+ ++ + L+ E+P + LRL+GLR T
Sbjct: 405 TLCIKIKLHTFEVYTRQVVLPKSIHLAEDLYNYSLPMLAKLEQEMPGMRLRLMGLRCTHL 464
>gi|389740094|gb|EIM81286.1| IMS-domain-containing protein [Stereum hirsutum FP-91666 SS1]
Length = 704
Score = 249 bits (635), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 141/322 (43%), Positives = 202/322 (62%), Gaps = 6/322 (1%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR+ MPGFIA+KLCPE++FVP + +Y+ S +F +YDPN +AAS+DE YL
Sbjct: 126 ARKFGVRSGMPGFIAQKLCPEMVFVPINMARYSEMSKRVMSIFRQYDPNMLAASVDEGYL 185
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
+ITE CR+ GI E ++R V +E LT SAG+A N++ +CSD NKPNGQF LP+
Sbjct: 186 NITEYCRDHGIDPEECVRQMRQQVVDETTLTVSAGIAANKV---ICSDKNKPNGQFRLPH 242
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
+ A++ F+ L IRKI G+G+V E +L + GI TC ++ ++L + H F L
Sbjct: 243 EPQAIIEFMRDLSIRKIPGVGRVNERLLESI-GIKTCGDIYTHRAVLSLMDKHFGLVFML 301
Query: 188 SVGLGLGSTNT-PQAR-FRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
LG+ S P R RKSI SERTF+ DK + +KL E+A L DM++ G GR
Sbjct: 302 RTHLGIASNVVQPWEREERKSIGSERTFNTLGDKDKILQKLDEVATELEEDMERGGWTGR 361
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQFNEDK 305
T+TLK K +++V TRA + ++I+ +D+ LL ELP+ LRLIGLRVT+ + K
Sbjct: 362 TVTLKYKLDTYQVFTRAKSFNRWITKKDDLFATGRDLLLPELPLKLRLIGLRVTKLKDLK 421
Query: 306 VRAPSDPTQKTLTNFMTSGHAS 327
+ P+ ++ + TSG +S
Sbjct: 422 KKEPATGIKRFFESAGTSGPSS 443
>gi|346971729|gb|EGY15181.1| DNA polymerase kappa [Verticillium dahliae VdLs.17]
Length = 630
Score = 248 bits (634), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 125/300 (41%), Positives = 190/300 (63%), Gaps = 7/300 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG R+ M GF+A+KLCP+LIF+ +F KY + R++ YDP F +AS+DEAYL
Sbjct: 145 ARKFGCRSGMAGFVAKKLCPQLIFIKLNFDKYIAKAQEVREIIAHYDPRFESASIDEAYL 204
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
+ITE C + IS + +++R ++E+ +T SAG+A N LAK+CS++NKPNGQ++LP+
Sbjct: 205 NITEYCSAKAISPEDAVQQMRREIHEKTKITVSAGIAANAKLAKICSNMNKPNGQYLLPS 264
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
DR ++M F++SLP RK+ G+G+V E L ++ G+ TC E+ + L +F +F +
Sbjct: 265 DRASIMKFMASLPPRKVNGVGRVLERQLAEI-GVTTCGEIYEYRQYLNQLFGQKAYEFLI 323
Query: 188 SVGLGLGSTNT-PQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
LGLG T P + RKS+ +E TF D L KL A+ L DM++ ++GR
Sbjct: 324 HCYLGLGRTKIQPAEEYERKSVGTESTFHDMSDPTQLTEKLRWTADELEKDMKRAEVKGR 383
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHA---SVLLKAELP-VSLRLIGLRVTQF 301
TL LK+K ++EV TR V K I ++D+ H+ + L+ E+P + LRL+GLR+T
Sbjct: 384 TLVLKIKLHTYEVFTRQVVTPKSICLADDLFSHSLPILIKLQQEMPDMKLRLMGLRMTHL 443
>gi|302908670|ref|XP_003049920.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256730856|gb|EEU44207.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 639
Score = 247 bits (631), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 129/300 (43%), Positives = 186/300 (62%), Gaps = 7/300 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG R+ M GF+A+KLCP LI + +F KY + R+V YDP F +AS+DEAYL
Sbjct: 173 ARKFGCRSGMAGFVAKKLCPSLILLKPNFEKYNAKAQEVREVLVNYDPRFESASIDEAYL 232
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
+ITE C+E + E E++R+ V+E +T SAG+A N LAK+CS++NKPNGQ+VLP+
Sbjct: 233 NITEYCQEHQMDPAEAVEQMRSEVHERTNITVSAGIAANAKLAKICSNMNKPNGQYVLPS 292
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
DR +M F+ LP RK+ G+G+V E L ++ GI TC ++ + + +F T++F
Sbjct: 293 DRPTIMAFMRDLPTRKVNGVGRVLERELLEI-GIKTCGDLYAQRQFINPLFGDKTSEFLF 351
Query: 188 SVGLGLGSTN-TPQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
LGLG T P + RKS+ +E TF D L KL AE L DM++ +GR
Sbjct: 352 KCYLGLGRTKIQPAEEYERKSVGTESTFRDMSDPTQLRDKLRWTAEELEKDMKRAECKGR 411
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLRLIGLRVTQF 301
TL LK+K +FEV TR V L + I ++D+ +A + L+ ++P + LRL+GLR TQ
Sbjct: 412 TLCLKVKLHTFEVFTRQVVLPRAIWLADDLYSYALPILSRLEQDMPGMKLRLMGLRCTQL 471
>gi|429857424|gb|ELA32293.1| DNA-directed polymerase [Colletotrichum gloeosporioides Nara gc5]
Length = 650
Score = 247 bits (631), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 130/300 (43%), Positives = 187/300 (62%), Gaps = 7/300 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++G R+ M GF+A+KLCP L+ + +F KY + R+V +YDP F +AS+DEAYL
Sbjct: 166 ARKYGCRSGMAGFVAKKLCPSLVMLKPNFEKYNAKAHEVREVLVEYDPRFESASIDEAYL 225
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
+ITE C E+ IS + E++R V+E +T SAG+A N LAK+CS++NKPNGQFVLPN
Sbjct: 226 NITEYCTEKDISPADAVEQMRREVHERTNITVSAGIAANAKLAKICSNMNKPNGQFVLPN 285
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
DR +M F++ LP RK+ GIG+V E L ++ GI TC ++ L +F +F +
Sbjct: 286 DRTEIMNFMAKLPPRKVNGIGRVLERQLAEI-GIKTCADIYPYRQFLRQLFGEKAYEFLI 344
Query: 188 SVGLGLGSTN-TPQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
+V LGLG T P + RKS+ +E TF D L KL A+ L DM++ +GR
Sbjct: 345 NVYLGLGRTRIQPAEEYERKSVGTESTFRDMSDPQQLREKLRWTADELEKDMKRAECKGR 404
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLRLIGLRVTQF 301
TL LK+K ++EV TR V L + I ++D+ + A + L+ E+P + LRL+GLR T
Sbjct: 405 TLVLKVKLHTYEVFTRQVVLPRAICLADDLYRFALPILGKLEEEMPEMKLRLMGLRCTHL 464
>gi|358390626|gb|EHK40031.1| hypothetical protein TRIATDRAFT_42536 [Trichoderma atroviride IMI
206040]
Length = 630
Score = 246 bits (629), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 131/300 (43%), Positives = 184/300 (61%), Gaps = 7/300 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG R+ M F+A+KLCP+LI + ++ KY+ + R V YDP F +AS+DEAYL
Sbjct: 152 ARQFGCRSGMASFVAKKLCPQLILIKQNYHKYSAKAQEVRTVLVNYDPRFESASIDEAYL 211
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
+ITE C E G+ E++R V E+ +T SAG+A N LAK+CS+INKPNGQ+VLP
Sbjct: 212 NITEYCEEHGMDPATAVEQMRKEVQEKTSITVSAGIAANARLAKICSNINKPNGQYVLPK 271
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
+R A+MTF+ LP RK+ GIG+V E L ++ G+ TC ++ + L +F T +F L
Sbjct: 272 ERNAIMTFMRDLPTRKVNGIGRVLERELLEI-GVKTCGDLYDQRQYLNRLFGDKTFEFLL 330
Query: 188 SVGLGLGSTN-TPQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
LGLG T P + RKS+ +E TF D L KL AE L DM+K +GR
Sbjct: 331 RCYLGLGRTKIQPAEEYERKSVGTESTFHDISDPTKLRDKLRSTAEALEKDMKKAECKGR 390
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLRLIGLRVTQF 301
TL +K+K +FEV TR V L K I ++D+ ++ + L+ E+P + LRL+GLR T
Sbjct: 391 TLCIKIKLHTFEVYTRQVILPKSIDLADDLYNYSLPMLAKLEQEIPGMKLRLMGLRCTNL 450
>gi|330919708|ref|XP_003298724.1| hypothetical protein PTT_09519 [Pyrenophora teres f. teres 0-1]
gi|311327928|gb|EFQ93167.1| hypothetical protein PTT_09519 [Pyrenophora teres f. teres 0-1]
Length = 637
Score = 246 bits (629), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 130/300 (43%), Positives = 184/300 (61%), Gaps = 7/300 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG R M GF+A KLCP+LI VP +F KY ++ R+V YDP F +AS DEAYL
Sbjct: 155 ARKFGCRPGMAGFVAMKLCPQLICVPMNFPKYMAKAEEVRQVLALYDPGFESASCDEAYL 214
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
++TE C+E ++ E ++R VYE+A +T SAG+A N LAK+CS+INKPNGQF+LP+
Sbjct: 215 NLTEYCKEHHLTPEEAVSQMRAHVYEKAKITVSAGIAANAKLAKICSNINKPNGQFLLPS 274
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
DR +M F+ +LP RK+ GIG+V E L D G+ TC ++ + L +F F
Sbjct: 275 DRQTIMEFMRTLPTRKVNGIGRVFEREL-DAIGVKTCGDIYAHRAYLVKLFGQKAFQFLT 333
Query: 188 SVGLGLGSTNTPQAR--FRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
LGLG T +A RKSI +E TF + + KL IAE L D+++ +GR
Sbjct: 334 QCYLGLGRTAIKRAEDYERKSIGTETTFKELQSPDAIRDKLRYIAEELEGDLKRTEYKGR 393
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK---AELP-VSLRLIGLRVTQF 301
TL +K+K ++EV TR T + ++D+ K++ +L+ E+P + LRLIGLRVT
Sbjct: 394 TLCIKIKLHTYEVHTRQTTPPFAVHKADDLYKYSLPMLEKLMKEIPNMKLRLIGLRVTHI 453
>gi|189201936|ref|XP_001937304.1| DNA polymerase kappa [Pyrenophora tritici-repentis Pt-1C-BFP]
gi|187984403|gb|EDU49891.1| DNA polymerase kappa [Pyrenophora tritici-repentis Pt-1C-BFP]
Length = 626
Score = 246 bits (627), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 129/300 (43%), Positives = 186/300 (62%), Gaps = 7/300 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG R+ M GF+A KLCP+LI VP +F KY ++ R+V YDP F +AS DEAYL
Sbjct: 155 ARKFGCRSGMAGFVAMKLCPQLICVPMNFQKYMAKAEEVRQVLALYDPGFESASCDEAYL 214
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
++TE C+E ++ E ++R V+E+A +T SAG+A N LAKVCS+INKPNGQF+LP+
Sbjct: 215 NLTEYCKEHHLTPEEAVSQMRADVFEKAKITVSAGIAANAKLAKVCSNINKPNGQFLLPS 274
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
DR +M F+ +LP RK+ GIG+V E L D G+ TC ++ + L +F F +
Sbjct: 275 DRQTIMEFMRTLPTRKVNGIGRVFEREL-DAVGVKTCGDIYAHRACLAKLFGQKAFQFLM 333
Query: 188 SVGLGLGSTNTPQAR--FRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
LGLG T +A RKS+ +E TF + L KL IAE L D+++ +GR
Sbjct: 334 QCYLGLGRTVIKRAEDYERKSVGTETTFKELQSPDALRGKLRYIAEELEGDLKRTEYKGR 393
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK---AELP-VSLRLIGLRVTQF 301
TL +K+K ++EV TR T + ++D+ K++ +L+ E+P + LRL+GLRVT
Sbjct: 394 TLCIKIKLHTYEVHTRQTTPPFAVHKADDLYKYSLPMLEKLMKEIPSMKLRLMGLRVTHI 453
>gi|392593740|gb|EIW83065.1| IMS-domain-containing protein [Coniophora puteana RWD-64-598 SS2]
Length = 642
Score = 245 bits (625), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 129/299 (43%), Positives = 186/299 (62%), Gaps = 4/299 (1%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR+ MP FIA+KLCP+LI V + + +Y S+ +F +YDP AA DE YL
Sbjct: 144 ARKFGVRSGMPTFIAKKLCPDLIVVYSHYARYNEMSNKVMSIFRRYDPTMYAAGCDEGYL 203
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
+IT+ CRE +S +E+R +V +E LT SAG+APN++LAK+CSD KPNGQF L
Sbjct: 204 NITKYCREHNLSPDACVQEIRETVQKETQLTVSAGIAPNKMLAKICSDKKKPNGQFHLEF 263
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
+ + F+ L IRK+ G+G+V E +L + GI+TC +++Q + L + +F L
Sbjct: 264 EPGVIKDFMKDLSIRKVPGVGRVNERLL-EAIGIHTCGDIIQHRAALYLMDKQFGLNFLL 322
Query: 188 SVGLGLGSTNT-PQAR-FRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
+ LG+ S P R RKSI +ERTFS D+ ++ KL ++ L DM G G+
Sbjct: 323 NTHLGIASNVVQPITRDLRKSIGAERTFSPISDRYRIFAKLEDVCAELEKDMDSGGWTGK 382
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISS-SEDILKHASVLLKAELPVSLRLIGLRVTQFNE 303
T+TLK K +F+V TRA + +++SS ED+ LL ELPV++RLIGLRVT+ +
Sbjct: 383 TVTLKFKLDTFQVFTRAKSFDRWVSSKKEDLFAIGKELLIPELPVTIRLIGLRVTKLKD 441
>gi|342878410|gb|EGU79753.1| hypothetical protein FOXB_09715 [Fusarium oxysporum Fo5176]
Length = 643
Score = 245 bits (625), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 130/300 (43%), Positives = 184/300 (61%), Gaps = 7/300 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG R+ M GF+A+KLCP LI + +F KY + R+V YDP F +AS+DEAYL
Sbjct: 175 ARKFGCRSGMAGFVAKKLCPSLILLKPNFQKYNAKAHEVREVLVNYDPRFESASIDEAYL 234
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
+ITE C+E + E E++R V+E+ +T SAG+A N LAK+CS++NKPNGQ+VL +
Sbjct: 235 NITEYCQEHQMDPAEAVEQMRREVHEKTNITVSAGIAANAKLAKICSNMNKPNGQYVLSS 294
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
DR +M F+ LP RK+ GIG+V E L ++ GI TC + + L +F T++F
Sbjct: 295 DRPTIMAFMRDLPTRKVNGIGRVLERELLEI-GIKTCGDFYEHRQYLNPLFGDKTSEFLF 353
Query: 188 SVGLGLGSTN-TPQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
+ LGLG T P + RKS+ +E TF D L KL AE L DM++ +GR
Sbjct: 354 TCYLGLGRTKIQPAEEYERKSVGTESTFRDMSDPTQLREKLRATAEELEQDMKRAECKGR 413
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLRLIGLRVTQF 301
TL LK+K +FEV TR V L + I ++D+ +A + L+ E+P + LRL+GLR T
Sbjct: 414 TLCLKVKLHTFEVLTRQVVLPRAICLADDLYNYALPILTKLEQEIPGMKLRLMGLRCTHL 473
>gi|443695884|gb|ELT96692.1| hypothetical protein CAPTEDRAFT_210052 [Capitella teleta]
Length = 443
Score = 244 bits (624), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 134/295 (45%), Positives = 190/295 (64%), Gaps = 14/295 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFGVRAAMPGFIA+KLCP+L+ VPT+F KY S +++ +YDPN SLDEAYL
Sbjct: 125 ARRFGVRAAMPGFIAKKLCPDLVIVPTNFDKYRQVSKDVKEILLQYDPNMCPMSLDEAYL 184
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
DIT+ ER E + RT+ E+ G+APN +LAKVCSD NKPNGQ+++P
Sbjct: 185 DITQHLAERKNFDAE-QKTFRTADGEQRMF----GIAPNMMLAKVCSDFNKPNGQYLIPF 239
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
+R AVM F+ LP+RK+ GIG+V+ +L G+ TC ++ +K LL ++S + ++FL
Sbjct: 240 NRQAVMDFVKDLPVRKVCGIGRVSCSML-GAMGVVTCSDLFRKRGLLLKLYSAISFNYFL 298
Query: 188 SVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTL 247
V G+GST+ + RKS+S+ERTF+ A L+ K E+ E L D++KE L+G+T+
Sbjct: 299 RVSAGVGSTSVQRGDDRKSMSTERTFAEINRPAELFAKCYELCEALVEDLKKENLKGKTI 358
Query: 248 TLKLKTASFEVRTRAVTL-------QKYISSSEDILKHASVLLKAELPVSLRLIG 295
TLK+KT + VRT+A +L Q S++ D+L+ L E P+ LRL+G
Sbjct: 359 TLKIKTIKYIVRTKAHSLLNATQDVQLLYSTARDLLRTEIRLCSPE-PLRLRLMG 412
>gi|367047493|ref|XP_003654126.1| hypothetical protein THITE_160571 [Thielavia terrestris NRRL 8126]
gi|347001389|gb|AEO67790.1| hypothetical protein THITE_160571 [Thielavia terrestris NRRL 8126]
Length = 618
Score = 244 bits (624), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 128/300 (42%), Positives = 187/300 (62%), Gaps = 7/300 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FG R+ M F+A+KLCP+LI +P +F KY + R++ YDP F +AS+DEAYL
Sbjct: 155 ARTFGCRSGMAAFVAKKLCPQLIILPLNFDKYNAKAAEVREILADYDPRFESASIDEAYL 214
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
+ITE C E + ++ +LR ++++ +T SAG+A N LAK+CS++NKPNGQFVLP
Sbjct: 215 NITEYCAEHDMDPADVVSQLRREIHQKTHVTVSAGIAANARLAKICSNMNKPNGQFVLPR 274
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
+R A+M F+ LP RK+ G+G+V E L V GI TC ++ + L +F T +F L
Sbjct: 275 ERTAIMAFMRDLPCRKVNGVGRVLERELASV-GIKTCGDIYAQRQYLAQLFGQKTYEFLL 333
Query: 188 SVGLGLGSTN-TPQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
LGLG T+ P + RKS+ +E TF D L RKL + AE L AD+++ +GR
Sbjct: 334 RCYLGLGRTHIQPADEYERKSVGTESTFREMSDPDQLRRKLRQTAEELEADLRRAECKGR 393
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLRLIGLRVTQF 301
TL LK+K +FEV TR V K + ++D+ ++ + L+ E+P ++LRL+GLR T
Sbjct: 394 TLCLKVKLHTFEVLTRQVVPPKAVHLADDLYSYSLPMLAKLEQEIPGLTLRLMGLRCTHL 453
>gi|325179727|emb|CCA14130.1| DNA polymerase kappa putative [Albugo laibachii Nc14]
Length = 614
Score = 244 bits (624), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 144/384 (37%), Positives = 200/384 (52%), Gaps = 40/384 (10%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR+AMPGFI +KLCP+L+F P KY+ + R++F YDPNF A SLDEA L
Sbjct: 184 ARKFGVRSAMPGFIGKKLCPDLVFTPVRMEKYSAIAQEIRQIFAVYDPNFTAFSLDEAAL 243
Query: 68 DITEVCRE-------------------------RGISGIEIAE------------ELRTS 90
D+T+ RE R G E+ E E+R
Sbjct: 244 DLTDYTREHWRKYVSQLSLKDWNHDGWMQDCETRQEGGHEMPESLTMKIASAIVSEIRQR 303
Query: 91 VYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKV 150
++EE LT SAG+A N +LAK+CS+I KPNGQF L + ++ FI LP+RK+GGIGKV
Sbjct: 304 IFEETQLTASAGIAVNTMLAKICSNIEKPNGQFALEGSKEVILEFIRELPVRKVGGIGKV 363
Query: 151 TEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSE 210
E IL I T +E+ + ++L VF TA + L LG+ + RKS S E
Sbjct: 364 MEKILA-ALNITTMQEVFDRRAVLFHVFKERTATWLLRTCLGIQEQQSESE--RKSYSRE 420
Query: 211 RTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYIS 270
TF D L + A I E L+ D+ ++ + R +TLKLK A F VRTR+VTL I
Sbjct: 421 TTFKAVSDFESLKQICASICEHLAQDLAEDNVAARNITLKLKCADFSVRTRSVTLNTSIQ 480
Query: 271 SSEDILKHASVLLKAELPVSLRLIGLRVTQFNEDKVRAPSDPTQKTLTNFMTSGHASKKI 330
S + +L+ A LLK E+P+SLRL+G+R R ++ QK ++
Sbjct: 481 SCKRLLQVALDLLKREMPISLRLLGIRAASLIPSVQREETNQVQKRQLTIQDCKMTTEGA 540
Query: 331 VGDQNSLGSDINDDCLIDDKETSV 354
+ G+ + L +D +V
Sbjct: 541 LDSMKDFGAQEEESALSNDSNKNV 564
>gi|347833303|emb|CCD49000.1| similar to DNA-directed polymerase kappa [Botryotinia fuckeliana]
Length = 637
Score = 244 bits (623), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 130/300 (43%), Positives = 185/300 (61%), Gaps = 7/300 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFGVR+AM GFIA+KLCP+LI VP +F KYT + R++ YDP F +AS+DEAYL
Sbjct: 145 ARRFGVRSAMAGFIAKKLCPQLIQVPLNFDKYTAKAQEVREILVDYDPRFESASIDEAYL 204
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
+ITE C++ I E+LR V+E+ +T SAG+A N +AK+CS+ NKPNGQ+ + N
Sbjct: 205 NITEYCQKNDIDPEAAVEQLRREVHEKTKVTISAGIAANAKIAKICSNYNKPNGQYRVAN 264
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
+R+ +M F+ LP RK+ GIG+V E L G+ TC ++ L +F F +
Sbjct: 265 NRVEIMKFMRDLPTRKVNGIGRVFEREL-GAIGVKTCGDIYNVRHYLPKLFGEKAFIFLM 323
Query: 188 SVGLGLGSTNTPQAR--FRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
LGLG T+ A RKS+ +E TF+ D L KL AE L D+Q+ +GR
Sbjct: 324 QCYLGLGRTDVKPAEEYTRKSVGTEGTFNDINDATELRSKLRHTAEELEKDLQRTQFKGR 383
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLRLIGLRVTQF 301
TL LK+K ++EV TR K + S++D+ K++ + L+AE+P ++LRL+GLR T
Sbjct: 384 TLVLKVKLKTYEVLTRQAAPPKAVFSADDLYKYSLPMLEKLEAEMPGLTLRLMGLRCTNL 443
>gi|322711916|gb|EFZ03489.1| DNA-directed polymerase kappa, putative [Metarhizium anisopliae
ARSEF 23]
Length = 621
Score = 244 bits (623), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 127/300 (42%), Positives = 187/300 (62%), Gaps = 7/300 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG R+ M GF+A+KLCP LI + F KYT + R++ YDP F +AS+DEAYL
Sbjct: 155 ARQFGCRSGMAGFVAKKLCPSLILIKPSFPKYTAKAQEIREILADYDPRFESASIDEAYL 214
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
+ITE C ++ + E+ E++R +Y++ +T SAG+A N LAK+CS++NKPNGQ+VLP+
Sbjct: 215 NITEYCHDKDATPAEVIEQMRREIYQKTDITVSAGIAANTKLAKICSNMNKPNGQYVLPS 274
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
DR ++M F+ LP RK+ GIG+V E L ++ G+ TC ++ + L +F T +F +
Sbjct: 275 DRTSIMAFMRDLPTRKVNGIGRVLERELLEL-GVRTCGDIYDQRKYLNMLFGDKTFEFLI 333
Query: 188 SVGLGLGSTNT-PQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
LGLG T P + RKSI +E TF D L KL AE L DM++ +GR
Sbjct: 334 GCYLGLGRTKIQPAEEYERKSIGTESTFRELSDSVKLREKLRWTAEELEKDMERAHCKGR 393
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLRLIGLRVTQF 301
TL LK+K +FEV TR V + + I S++++ + + L+ E+P + LRL+GLR T
Sbjct: 394 TLCLKIKLHTFEVFTRQVVMPRAICSADELYNFSLPILTKLEQEIPAMKLRLMGLRCTHL 453
>gi|392577344|gb|EIW70473.1| hypothetical protein TREMEDRAFT_68079 [Tremella mesenterica DSM
1558]
Length = 571
Score = 244 bits (622), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 142/361 (39%), Positives = 205/361 (56%), Gaps = 11/361 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG+R+ M GFIA+KLCPE+I P +F Y S R+V +YD N M ASLDE YL
Sbjct: 135 ARKFGIRSGMAGFIAKKLCPEIILTPLNFDLYIEASKSVREVLLEYDENLMMASLDEGYL 194
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
+IT E +S E+ +LR V + GLT SAG+A NR+LAK+CSD NKPNGQF LP
Sbjct: 195 NITSYMAEHCMSATEVVTQLRGQVEAKTGLTISAGIASNRMLAKICSDQNKPNGQFELPF 254
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
DR +++ F+ LP+RKI G G+VTE L + G+ TC ++ K + L A+
Sbjct: 255 DRSSIVRFMRDLPVRKIPGFGRVTERCL-EGLGVETCGDIYTKRADLLAMDHWFGFQGLC 313
Query: 188 SVGLGLGSTNTPQARF--RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
LG+ + RKS+ ERTF D + L EIAE L D+++ G+
Sbjct: 314 KAHLGIADNKVEPGKREERKSVGCERTFRDKTDNEDIMNTLTEIAEELGKDLERLEYSGK 373
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQFNEDK 305
+T+K K ++ +TRA T+ KYIS+S++IL A LL+ ELP+ +RL+G+R++ +
Sbjct: 374 CVTVKYKLHTYVNKTRAQTVGKYISTSKEILPIAQELLRKELPLRIRLLGIRLSTLKDLT 433
Query: 306 VRAPSDPTQKTLTNFMTSGHASKKIVGDQNSLGSDINDDCLIDDKETSVSLDVSETNNYE 365
+ K + NF TS SK+ ++ +G ND+ I+ +V E N +
Sbjct: 434 I------PDKGIRNFFTS--PSKRKRSQEDEIGIIENDEPEIESGLEGSDGEVEELNEED 485
Query: 366 F 366
F
Sbjct: 486 F 486
>gi|367032254|ref|XP_003665410.1| hypothetical protein MYCTH_2309074 [Myceliophthora thermophila ATCC
42464]
gi|347012681|gb|AEO60165.1| hypothetical protein MYCTH_2309074 [Myceliophthora thermophila ATCC
42464]
Length = 619
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 130/300 (43%), Positives = 184/300 (61%), Gaps = 7/300 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG R+ M F+A+KLCPELI +P +F KY + R++ YDP F +AS+DEAYL
Sbjct: 158 ARKFGCRSGMASFVAKKLCPELIVLPLNFDKYNAKAAEVREILATYDPRFESASIDEAYL 217
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
+ITE C + ++ +R ++E+ +T SAG+A N LAK+CS+INKPNGQ+VLP
Sbjct: 218 NITEYCLRHDMDPADVVSHMRREIHEKTHITVSAGIAANARLAKICSNINKPNGQYVLPR 277
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
DR A+M F+ LP RK+ GIG+V E L V GI TC ++ + L +F T +F L
Sbjct: 278 DRTAIMDFMRDLPCRKVNGIGRVLERELGSV-GIKTCGDIYTQRQYLDRLFGQKTYEFLL 336
Query: 188 SVGLGLGSTNT-PQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
LGLG TN P + RKS+ +E TF D L KL AE L AD+++ +GR
Sbjct: 337 RCYLGLGRTNIQPADEYERKSVGTESTFREMSDPVQLREKLRRTAEELEADLKRAECKGR 396
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLRLIGLRVTQF 301
TL LK+K +FEV TR V K + ++D+ K++ + L+ ++P + LRL+GLR T
Sbjct: 397 TLCLKVKLHTFEVLTRQVVPPKAVCLADDLYKYSLPMLAKLEQDIPGLKLRLMGLRCTHL 456
>gi|198425156|ref|XP_002120223.1| PREDICTED: similar to polymerase (DNA directed), kappa [Ciona
intestinalis]
Length = 706
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 133/333 (39%), Positives = 196/333 (58%), Gaps = 40/333 (12%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++GVRAAMPGFIA+KLCP LI VPT+F KY S T+++F +YD NF SLDEA+L
Sbjct: 148 ARKYGVRAAMPGFIAKKLCPNLIIVPTNFDKYREVSKETQEIFSEYDENFCGMSLDEAFL 207
Query: 68 DITEVCRER----------------------------------GISGIEIAEELRTSVYE 93
DIT+ ++R G S E+A+E+R + +
Sbjct: 208 DITDHLQKRLIYDQEERTFHYHPTLAPTTTSEDTDDKKSSETFGFSAEEVAKEIRFRIQQ 267
Query: 94 EAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEH 153
+ LT SAG+APN +LAK+ SD+NKPNGQ +R +M FI P+RK+ GIGKVTE
Sbjct: 268 KTLLTASAGIAPNTMLAKIGSDLNKPNGQTFFAPNRDEIMKFIKDFPVRKVNGIGKVTEQ 327
Query: 154 ILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTF 213
+L + G+ C ++ + + L +FS ++ FF + LG S RKSIS+ERTF
Sbjct: 328 LLSSL-GVQKCGDIYEMRAELMLLFSATSCSFFFRMCLGCSSNILEPDGERKSISTERTF 386
Query: 214 SVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSE 273
S ++ L+ KL E+ L+ADM+K+ ++G+TLTLK K F++ TR+ T+ +++ +
Sbjct: 387 STISNRDELFAKLDELCHSLAADMKKQNVQGKTLTLKTKNVDFQLHTRSKTINVPMTNYQ 446
Query: 274 DILKHASVLLKAEL-----PVSLRLIGLRVTQF 301
I A LLK E+ +SLRL+G+ +++
Sbjct: 447 TIFPVAQELLKQEILNANNKLSLRLMGVGLSKL 479
>gi|171680875|ref|XP_001905382.1| hypothetical protein [Podospora anserina S mat+]
gi|27764332|emb|CAD60612.1| unnamed protein product [Podospora anserina]
gi|170940065|emb|CAP65292.1| unnamed protein product [Podospora anserina S mat+]
Length = 641
Score = 242 bits (618), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 124/300 (41%), Positives = 189/300 (63%), Gaps = 7/300 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFG R+ M GF+A+KLCPELI +P +F KY + R++ YDP F +AS+DEAYL
Sbjct: 171 ARRFGCRSGMAGFVAKKLCPELILLPLNFDKYNAKAAEVREILADYDPRFESASIDEAYL 230
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
+IT+ C + G+ ++ ++R ++E+ +T SAG+A N LAK+CS++NKPNGQ+VLP
Sbjct: 231 NITQYCIDHGMDAADVVSQMRREIHEKTHITVSAGIAANARLAKICSNMNKPNGQYVLPR 290
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
DR+ +M F+ +L R++ GIG+V E L GI+TC ++ + + +F T +F L
Sbjct: 291 DRVVIMEFMRNLSCRQVNGIGRVLEREL-GTIGISTCGDIYTQRQFIEKLFGEKTYNFLL 349
Query: 188 SVGLGLGSTN-TPQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
LGLG T+ P + RKS+ +ERTF ++ L +L IAE L DM++ +GR
Sbjct: 350 RCYLGLGRTSIQPAEEYERKSVGTERTFRDMDNPTQLREQLRRIAEELEKDMRRAECKGR 409
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHA---SVLLKAELP-VSLRLIGLRVTQF 301
TL +K+K ++EV TR + K + ++D+ +A V L+ E+P + LRL+GLR T
Sbjct: 410 TLCIKVKLHTYEVLTRQIAPPKAVYLADDLYDYALPMLVKLEQEVPNIKLRLLGLRCTHL 469
>gi|145348411|ref|XP_001418642.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578872|gb|ABO96935.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 427
Score = 242 bits (618), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 129/298 (43%), Positives = 189/298 (63%), Gaps = 11/298 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++GVRAAMPGFIA+KLCP+L+FV DF KY S+ +R VF +Y+P+++A SLDEAY+
Sbjct: 130 ARKYGVRAAMPGFIAKKLCPDLVFVKPDFKKYVKASNESRGVFAQYNPDYIAGSLDEAYI 189
Query: 68 DITEVCRERGISGIEIAEELRTSVYEE-AGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP 126
++TE C + + IAEE+R+ V E GLTCS G +R LAKVCSD NKPNGQ++L
Sbjct: 190 EVTEYCEKHDTTMEAIAEEIRSKVKEATGGLTCSVGGGCSRRLAKVCSDFNKPNGQYILG 249
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFF 186
R ++ F+ LP+RK+ GIGK E IL + F I TC ++L K + + A+F+ DF
Sbjct: 250 TTRDDILKFLRDLPVRKMYGIGKTLERILNE-FDIKTCGDLLAKRATMLALFTPKAFDFL 308
Query: 187 LSVGLGLGSTNTPQ-----ARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEG 241
L + LG+G+ P+ + RK +S TF T DKA L K+ E+A ++ + Q+
Sbjct: 309 LGIALGIGTECHPRETPEGSGGRKGVSKSETFKATADKAYLDAKMTELATEVALECQRLN 368
Query: 242 LRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV----SLRLIG 295
L+GR + +KLK ++F+V R TL + + I+ A L++ E + +LRL+G
Sbjct: 369 LKGRMVAVKLKRSTFDVIQRQTTLAGPTNDVKTIVNSALRLMRNENSIGANMTLRLVG 426
>gi|302681639|ref|XP_003030501.1| hypothetical protein SCHCODRAFT_57666 [Schizophyllum commune H4-8]
gi|300104192|gb|EFI95598.1| hypothetical protein SCHCODRAFT_57666 [Schizophyllum commune H4-8]
Length = 600
Score = 242 bits (617), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 131/309 (42%), Positives = 186/309 (60%), Gaps = 11/309 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++GVR+ MP FIA+KLCP+LI V + +Y+ S +F +YDP AS DE YL
Sbjct: 137 ARQYGVRSGMPTFIAKKLCPDLILVKINHERYSEKSKQVMDIFRRYDPTMCPASCDEGYL 196
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
+IT+ CRE I E E+R V+EE+ LT SAG+APN++ +INKPNGQF LP
Sbjct: 197 NITKYCREHDIGPEECVAEMRRVVHEESDLTVSAGIAPNKV------NINKPNGQFYLPF 250
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
DR ++M+F+ L IRKI G+G+V E +L + GI TC ++ + + + H F L
Sbjct: 251 DRSSIMSFMRDLSIRKIPGVGRVNERLLESI-GIKTCGDIYTHRATVYLMDKHFGMRFLL 309
Query: 188 SVGLGLGSTNT--PQARFRKSISSER--TFSVTEDKALLYRKLAEIAEMLSADMQKEGLR 243
LG+ S P+ + RKSI +ER TF+ +K + KL E+A L DM+ G
Sbjct: 310 QTYLGIASNTVRPPERQERKSIGAERRVTFNPISEKDKIMLKLDEVAAELEDDMRTSGWA 369
Query: 244 GRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQFNE 303
GRT+TLK K +++V TRA + ++I+S ED+ LL E P+ LRLIGLRVT+ +
Sbjct: 370 GRTVTLKFKLDTYQVFTRAKSFDRWITSKEDLYAAGKELLAPEWPLILRLIGLRVTKLKD 429
Query: 304 DKVRAPSDP 312
+ P+ P
Sbjct: 430 LRAPEPTMP 438
>gi|395333149|gb|EJF65527.1| DNA/RNA polymerase [Dichomitus squalens LYAD-421 SS1]
Length = 669
Score = 242 bits (617), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 130/307 (42%), Positives = 189/307 (61%), Gaps = 5/307 (1%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++GVR+ MP FIA+KLCP+LI + + + +Y+ S+ V +YDPN DE YL
Sbjct: 146 ARKYGVRSGMPTFIAKKLCPDLIVLKSHYDRYSEMSNKVMAVCRRYDPNMSVVGCDEGYL 205
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPN-RLLAKVCSDINKPNGQFVLP 126
+IT C E G++ E +++R ++EE LT SAG+APN ++LAK+CSD NKPNGQF L
Sbjct: 206 NITSYCEEHGMTPDECVQDMRQKIHEETALTASAGIAPNKKMLAKICSDRNKPNGQFKLD 265
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFF 186
+ A+ F+ L IRK+ G+G+V E +L + GI TC ++ + +L + F
Sbjct: 266 FEARAIKAFMRDLSIRKVPGVGRVNERLLESI-GIKTCGDIYAQRGILSLMDKQFGLMFL 324
Query: 187 LSVGLGLGS--TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRG 244
L LG+ S Q +KSI +ERTF+ D A ++ KL E+A LS DM + G
Sbjct: 325 LQSYLGIASNVVEPWQREEKKSIGAERTFNTLSDTAKIHAKLEEVAAELSKDMTEGQWTG 384
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISS-SEDILKHASVLLKAELPVSLRLIGLRVTQFNE 303
+T+TLK K +F+V TRA +L K++S +E++ LLK ELP++LRLIGLRVT+ +
Sbjct: 385 KTITLKYKLNTFQVCTRAKSLDKWLSGRAEELFTLGKELLKPELPLTLRLIGLRVTKLKD 444
Query: 304 DKVRAPS 310
K A S
Sbjct: 445 LKAEAES 451
>gi|449546327|gb|EMD37296.1| hypothetical protein CERSUDRAFT_113946 [Ceriporiopsis subvermispora
B]
Length = 671
Score = 241 bits (615), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 132/306 (43%), Positives = 180/306 (58%), Gaps = 4/306 (1%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++GVR+ M FIA KLCP LI V +F++Y+ S +F +YDP+ AA DE YL
Sbjct: 146 ARKYGVRSGMASFIATKLCPNLILVKNNFSRYSEMSKKVMNIFRRYDPDMCAAGCDEGYL 205
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
+IT C E I E E+R V+ E LT SAG+APN++LAK+CSD NKPNGQF L
Sbjct: 206 NITPYCTEHNIVPEECVREMREVVHRETDLTVSAGIAPNKMLAKICSDKNKPNGQFKLEF 265
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
A+ F+ L IRK+ G+G+V E +L + GI TC ++ +L + F L
Sbjct: 266 QPQAIKAFMKDLSIRKVPGVGRVNERLLESI-GIKTCGDIYTHRGVLSLMDKQFGLHFLL 324
Query: 188 SVGLGLGS--TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
LG+ S Q RKSI +ERTFS + + KL E+A L ADMQ +G G+
Sbjct: 325 QTYLGIASNVVQPWQREERKSIGAERTFSTLWTQEDILNKLEEVAAELEADMQGDGWSGK 384
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISS-SEDILKHASVLLKAELPVSLRLIGLRVTQFNED 304
T+TLK K +++V TRA + ++IS+ ED+ LL ELP+ +RLIGLRVT+ +
Sbjct: 385 TITLKYKLDTYQVFTRAKSFDRWISTRKEDLFAIGKELLMPELPLRVRLIGLRVTKLKDL 444
Query: 305 KVRAPS 310
K A S
Sbjct: 445 KKEADS 450
>gi|396470133|ref|XP_003838570.1| similar to DNA-directed polymerase kappa [Leptosphaeria maculans
JN3]
gi|312215138|emb|CBX95091.1| similar to DNA-directed polymerase kappa [Leptosphaeria maculans
JN3]
Length = 646
Score = 241 bits (614), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 128/326 (39%), Positives = 193/326 (59%), Gaps = 16/326 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG R+ M GF+A KLCP+LI VP + KY ++ R+V +YDP F +AS DEAYL
Sbjct: 171 ARKFGCRSGMAGFVAMKLCPQLICVPMNVAKYMAKAEEVREVLARYDPGFESASCDEAYL 230
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
++T+ C+E +S ++ +LR V+E A +T SAG+A N LAK+ S+ NKPNGQF LP+
Sbjct: 231 NLTQYCKEHHMSPEDVVSQLRADVFERAKITVSAGIAANAKLAKIGSNKNKPNGQFYLPS 290
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
DR +M F+ ++P RK+ GIG+V E L D G+ TC ++ + L +F F +
Sbjct: 291 DRQTIMDFMKTMPTRKVNGIGRVFEREL-DAIGVKTCGDIYAHRAYLAKLFGQKAFQFLM 349
Query: 188 SVGLGLGSTNTPQA--RFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
LGLG T +A RKS+ +E TF + L KL +AE L D+++ +GR
Sbjct: 350 QCYLGLGRTKIQRADESHRKSVGTETTFRELQSPDDLRGKLRHVAEELEGDLKRTEYKGR 409
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK---AELP-VSLRLIGLRVTQF 301
TL +K+K ++EV TR +T + ++D+ K++ +L+ +E+P + LRL+GLRVT
Sbjct: 410 TLCIKIKLHTYEVHTRQITPPFAVHKADDLYKYSLPMLEKFMSEIPNMKLRLMGLRVTHI 469
Query: 302 NEDK---------VRAPSDPTQKTLT 318
K +R P+ P T +
Sbjct: 470 ISTKKPGIDFFGRIRPPTAPKPSTTS 495
>gi|440470492|gb|ELQ39560.1| DNA polymerase kappa [Magnaporthe oryzae Y34]
gi|440487264|gb|ELQ67065.1| DNA polymerase kappa [Magnaporthe oryzae P131]
Length = 873
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 126/300 (42%), Positives = 184/300 (61%), Gaps = 7/300 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FG R+ M GF+A+KLCP L+F+ +F KYT + RKV KYDP F +AS+DEAYL
Sbjct: 398 ARTFGCRSGMAGFVAKKLCPNLVFIKPNFEKYTAKAQEVRKVLAKYDPRFESASIDEAYL 457
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
+IT+ C + + E E++R V+ +T S+GVA N LAK+C +INKPNGQ+VLP+
Sbjct: 458 NITQYCADNNLEPGEAVEQMRREVHLSTNITVSSGVAANAKLAKICGNINKPNGQYVLPS 517
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
+R A++ F+ +P RK+ GIG+V E L+ V G++TC ++ + L +F F +
Sbjct: 518 ERPAIIEFMRDMPCRKVNGIGRVLERELQAV-GVSTCGDIYPQRKYLTQLFGEKAFKFLV 576
Query: 188 SVGLGLGSTN-TPQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
LGLG TN P + RKS+ +E TF+ + L +KL AE L DM++ ++GR
Sbjct: 577 DCYLGLGRTNIQPAEEYERKSVGTESTFNSISEPGDLRKKLRHTAEELEKDMKRAEVKGR 636
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL----KAELPVSLRLIGLRVTQF 301
TL +K+K +FEV TR V L + I +ED+ ++ +L K + S RL+GLR T
Sbjct: 637 TLVIKIKLHTFEVYTRQVILPRSIHLAEDLYNYSLPMLARLEKEKPGFSCRLMGLRCTNL 696
>gi|389635609|ref|XP_003715457.1| DNA polymerase kappa [Magnaporthe oryzae 70-15]
gi|351647790|gb|EHA55650.1| DNA polymerase kappa [Magnaporthe oryzae 70-15]
Length = 634
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 126/300 (42%), Positives = 184/300 (61%), Gaps = 7/300 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FG R+ M GF+A+KLCP L+F+ +F KYT + RKV KYDP F +AS+DEAYL
Sbjct: 159 ARTFGCRSGMAGFVAKKLCPNLVFIKPNFEKYTAKAQEVRKVLAKYDPRFESASIDEAYL 218
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
+IT+ C + + E E++R V+ +T S+GVA N LAK+C +INKPNGQ+VLP+
Sbjct: 219 NITQYCADNNLEPGEAVEQMRREVHLSTNITVSSGVAANAKLAKICGNINKPNGQYVLPS 278
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
+R A++ F+ +P RK+ GIG+V E L+ V G++TC ++ + L +F F +
Sbjct: 279 ERPAIIEFMRDMPCRKVNGIGRVLERELQAV-GVSTCGDIYPQRKYLTQLFGEKAFKFLV 337
Query: 188 SVGLGLGSTN-TPQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
LGLG TN P + RKS+ +E TF+ + L +KL AE L DM++ ++GR
Sbjct: 338 DCYLGLGRTNIQPAEEYERKSVGTESTFNSISEPGDLRKKLRHTAEELEKDMKRAEVKGR 397
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL----KAELPVSLRLIGLRVTQF 301
TL +K+K +FEV TR V L + I +ED+ ++ +L K + S RL+GLR T
Sbjct: 398 TLVIKIKLHTFEVYTRQVILPRSIHLAEDLYNYSLPMLARLEKEKPGFSCRLMGLRCTNL 457
>gi|70982554|ref|XP_746805.1| DNA-directed polymerase kappa [Aspergillus fumigatus Af293]
gi|66844429|gb|EAL84767.1| DNA-directed polymerase kappa, putative [Aspergillus fumigatus
Af293]
gi|159122955|gb|EDP48075.1| DNA-directed polymerase kappa, putative [Aspergillus fumigatus
A1163]
Length = 614
Score = 240 bits (612), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 130/331 (39%), Positives = 195/331 (58%), Gaps = 16/331 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++G R+ M F+A+KLCP+LI +P ++ KYT + R +F +YDP F +AS+DEAYL
Sbjct: 154 ARKYGCRSGMASFVAKKLCPQLICLPQNYEKYTAKAQEIRVIFAQYDPLFESASIDEAYL 213
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
+IT C E + E +R + E ++ SAG+A N +AK+CS+ NKPNGQF +PN
Sbjct: 214 NITSYCTENNLDPEEAVSRMRAEILETTKISVSAGIAANAKVAKICSNRNKPNGQFRVPN 273
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
+R A+M F+ +LP+RK+ G+G+V E L D GI TC ++ + +LL +F F +
Sbjct: 274 EREAIMEFMRTLPVRKVNGVGRVFEREL-DAIGIKTCGDIYPQRALLTRLFGEKAFHFLM 332
Query: 188 SVGLGLGSTN-TPQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
LGLG T P + RKS+ +ERTFS DK LL KL + A+ L D+ + +GR
Sbjct: 333 QCFLGLGRTQIQPVENYERKSVGTERTFSEIGDKQLLREKLWDTAQELEKDLARAECKGR 392
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLRLIGLRVTQF 301
TL LK+K A+FEV +R + +S ++D+ + + L+ E+P + LRL+GLR T
Sbjct: 393 TLVLKVKLATFEVLSRQCQPPRAVSLAKDLYAFSLPMLAKLEKEIPNMKLRLLGLRCTNL 452
Query: 302 NEDKVRAPSDPTQKTLTNFMTSGHASKKIVG 332
T+K NF + S+ + G
Sbjct: 453 VS---------TKKVDINFFGAASQSRSVAG 474
>gi|240276616|gb|EER40127.1| DNA polymerase kappa [Ajellomyces capsulatus H143]
gi|325095340|gb|EGC48650.1| DNA polymerase kappa [Ajellomyces capsulatus H88]
Length = 604
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 128/304 (42%), Positives = 181/304 (59%), Gaps = 7/304 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG R+ M GFIARKLCP+LI +P ++ KYT ++ R + +DP F +AS+DEAYL
Sbjct: 149 ARKFGCRSGMAGFIARKLCPDLILIPQNYQKYTAKAEEIRAILSSFDPQFQSASIDEAYL 208
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
+IT C I LR+ V E+ +T SAG+APN +AK+CS+ NKPNGQ +PN
Sbjct: 209 NITAYCATNEIEPEVAVRRLRSQVMEQTKVTVSAGIAPNARIAKICSNWNKPNGQHYVPN 268
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
DR +M F+S +P+RKI G+G+V E L + G+ C ++ ++ +F F +
Sbjct: 269 DRSIIMKFMSEIPVRKINGVGRVFEREL-EAIGVKNCSDIFTHRGVILPLFGEKCYRFLM 327
Query: 188 SVGLGLGSTNT--PQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
LGLGST + RKS+++ERTF D A L L A L DM + RGR
Sbjct: 328 QCYLGLGSTKIRPVEESERKSVATERTFRDIGDMADLQEMLQLTALELEKDMLRTQFRGR 387
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHA---SVLLKAELP-VSLRLIGLRVTQF 301
TLTLK+K +FEV +R V L K + S+DI +A + L+ E+P + +RL+GLR T
Sbjct: 388 TLTLKVKLHTFEVLSRQVVLPKAVCLSDDIYHYALPMLIRLRKEMPNMKIRLMGLRCTNL 447
Query: 302 NEDK 305
+ K
Sbjct: 448 SSMK 451
>gi|119488628|ref|XP_001262764.1| DNA-directed polymerase kappa, putative [Neosartorya fischeri NRRL
181]
gi|119410922|gb|EAW20867.1| DNA-directed polymerase kappa, putative [Neosartorya fischeri NRRL
181]
Length = 614
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 129/331 (38%), Positives = 195/331 (58%), Gaps = 16/331 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++G R+ M F+A+KLCP+LI +P ++ KYT + R +F +YDP F +AS+DEAYL
Sbjct: 154 ARKYGCRSGMASFVAKKLCPQLICLPQNYEKYTAKAQEIRAIFAQYDPLFESASIDEAYL 213
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
+IT C E + E +R + E ++ SAG+A N +AK+CS+ NKPNGQF +PN
Sbjct: 214 NITSYCTENNLDPEEAVSRMRAEILETTKISVSAGIAANAKIAKICSNRNKPNGQFRVPN 273
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
+R A+M F+ +LP+RK+ G+G+V E L D GI TC ++ + +LL +F F +
Sbjct: 274 EREAIMEFMRTLPVRKVNGVGRVFEREL-DAIGIKTCGDIYPQRALLTRLFGEKAFHFLI 332
Query: 188 SVGLGLGSTNT-PQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
LGLG T P + RKS+ +ERTF+ DK LL KL + A+ L D+ + +GR
Sbjct: 333 QCFLGLGRTQVQPVENYERKSVGTERTFNEIGDKQLLREKLWDTAQELEKDLARTECKGR 392
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLRLIGLRVTQF 301
TL LK+K A+FEV +R + +S ++D+ + + L+ E+P + LRL+GLR T
Sbjct: 393 TLVLKVKLATFEVLSRQCQPPRAVSLAKDLYAFSLPMLAKLEKEIPNMKLRLLGLRCTNL 452
Query: 302 NEDKVRAPSDPTQKTLTNFMTSGHASKKIVG 332
T+K NF + S+ + G
Sbjct: 453 VS---------TKKVDINFFGAASQSRSVAG 474
>gi|339243265|ref|XP_003377558.1| DNA polymerase kappa [Trichinella spiralis]
gi|316973633|gb|EFV57197.1| DNA polymerase kappa [Trichinella spiralis]
Length = 844
Score = 238 bits (608), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 142/367 (38%), Positives = 202/367 (55%), Gaps = 69/367 (18%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVRAAMPGFI +KLCP+L VP +F KY+ S + + YDPN +ASLDEAY+
Sbjct: 370 ARKFGVRAAMPGFIGKKLCPQLTIVPCNFEKYSAISREVKNILKLYDPNLCSASLDEAYM 429
Query: 68 DIT----------------------------------------------EVCRERGISGI 81
D+T E+C E G I
Sbjct: 430 DVTEYLVLRQSQNTPVFHRSVHYTGECDCRWPYKYLPCCVLRESTKISSEICNECGKLCI 489
Query: 82 -------------EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPND 128
E+A E+R V + GLTCS G+APN +LAK+ SDINKPNGQF + D
Sbjct: 490 HVEDEVAFGNNAEEVAREIRFLVEQATGLTCSIGIAPNSMLAKLGSDINKPNGQFHMRAD 549
Query: 129 RMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLS 188
R ++ F+ +LPIRK+ GIG VTE +L + G++TC E+ Q+ +L FS +A FL
Sbjct: 550 RNFIVDFLRNLPIRKVCGIGAVTEALLNGL-GVSTCGELYQRRGILALAFSERSAISFLR 608
Query: 189 VGLGLG---STNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
+ LG+ + RKSIS+ERTFS + + L ++ LS D+ + L+G+
Sbjct: 609 ISLGIDDEFCDKDDEVASRKSISTERTFSEISEPSRLLAVCRKLCNSLSEDVIERNLKGK 668
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVT 299
T+TLK+KT F+VRTRA T+ +Y+ ++++I AS LL+ E+ P+ LRL+G+R++
Sbjct: 669 TVTLKVKTIDFDVRTRANTVDRYVQAADEIYNIASSLLQEEIRARLPNPLRLRLMGVRLS 728
Query: 300 QFNEDKV 306
E KV
Sbjct: 729 TLQESKV 735
>gi|225556402|gb|EEH04691.1| DNA polymerase kappa [Ajellomyces capsulatus G186AR]
Length = 604
Score = 238 bits (608), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 150/410 (36%), Positives = 214/410 (52%), Gaps = 44/410 (10%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG R+ M GFIARKLCP+LI +P ++ KY ++ R + +DP F +AS+DEAYL
Sbjct: 149 ARKFGCRSGMAGFIARKLCPDLILIPQNYQKYAAKAEEIRAILSSFDPQFQSASIDEAYL 208
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
+IT C I + LR+ V E+ +T SAG+APN +AK+CS+ NKPNGQ +PN
Sbjct: 209 NITAYCATNEIEPEVVVCRLRSQVMEQTRVTVSAGIAPNARIAKICSNWNKPNGQHYVPN 268
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
DR +M F+S +P+RKI G+G+V E L + G+ C ++ ++ +F F +
Sbjct: 269 DRSIIMKFMSEIPVRKINGVGRVFEREL-EAIGVKNCSDIFTHRGVILPLFGEKCYRFLM 327
Query: 188 SVGLGLGSTNT--PQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
LGLGST + RKS+ +ERTF D A L L A L DM + RGR
Sbjct: 328 QCYLGLGSTKIRPVEESERKSVGTERTFRDIGDMADLQEMLQLTALELEKDMLRTQFRGR 387
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHAS---VLLKAELP-VSLRLIGLRVTQF 301
TLTLK+K +FEV +R V L K + S+DI +A + L+ E+P + +RL+GLR T
Sbjct: 388 TLTLKVKLHTFEVLSRQVVLPKAVCLSDDIYDYAFPMLIRLRKEMPNMKIRLMGLRCT-- 445
Query: 302 NEDKVRAPSDPTQKTLTNFMTSGHASK------KIVGDQNSLGS------DIND--DCLI 347
N +R P NF + S VG+ + G +I D D L
Sbjct: 446 NLSSMRKPD-------INFFGGTYTSSVRPQSHSFVGNASCFGEEEFGVLNIEDTHDRLR 498
Query: 348 DDKETSVSLDVSETNNYEFGDPVCDNSLPDLNDENCSFSNKISEVEKIHE 397
D T D S P+ D + N+I+E+++I E
Sbjct: 499 DSDATRRDWDTSHR--------------PNGTDTDSPIPNQINELDRIPE 534
>gi|393245146|gb|EJD52657.1| IMS-domain-containing protein [Auricularia delicata TFB-10046 SS5]
Length = 556
Score = 238 bits (608), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 139/353 (39%), Positives = 202/353 (57%), Gaps = 4/353 (1%)
Query: 7 SARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAY 66
+AR+FGVR+ M F+A+KLCP+L+ + +Y+ S + YDP A DE Y
Sbjct: 135 AARKFGVRSGMATFVAQKLCPQLVCIHQSHDRYSTVSKEIMTIIRNYDPEMCVAGCDEGY 194
Query: 67 LDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP 126
L+IT C E ++ + +LR V+E LT SAG+APN LAK+CSD NKPNGQF LP
Sbjct: 195 LNITAYCDENDMTPDDCVAQLRREVFEATKLTVSAGIAPNMTLAKICSDKNKPNGQFHLP 254
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFF 186
+R ++ F+ LPIRK+ G+G+V E +L D GI TC ++ + + + H + D+
Sbjct: 255 FERDKIIEFMRDLPIRKVPGVGRVQERML-DSIGIRTCGDVYTHRATIHLLGKHFSLDYL 313
Query: 187 LSVGLGLGSTNT-PQAR-FRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRG 244
L LGLGST P AR RKS+ ERTF+ D+ L KL IA L D++ G G
Sbjct: 314 LHAYLGLGSTVVQPGAREERKSVGVERTFNPISDQDQLVAKLENIAHTLEEDLEHGGWAG 373
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQFNED 304
+T+TLK K +F+ TRA + +Y++ ED+ A LL AE+P+ +RLIG+RVT +
Sbjct: 374 KTVTLKYKLDTFQSFTRAKSCPRYVNKKEDLFSIAKELLLAEMPLCIRLIGIRVTNLKDL 433
Query: 305 KVRAPSDPTQKTLTNFMTSGHASKKIVGDQNSLGSDINDDCLIDDKETSVSLD 357
K+ A + ++ L + S + +K+ + + DD L ETS S D
Sbjct: 434 KI-AENSGIKRFLKHAPGSPNKKRKLSHGELDGVAPAGDDNLKPAAETSGSSD 485
>gi|320589524|gb|EFX01985.1| DNA-directed polymerase [Grosmannia clavigera kw1407]
Length = 600
Score = 238 bits (607), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 129/304 (42%), Positives = 184/304 (60%), Gaps = 7/304 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FG R+ M GF+A+KLCP+LI + D KY + R+V +YDP F +AS+DEAYL
Sbjct: 121 ARSFGCRSGMAGFVAKKLCPKLIILKPDHAKYVAKAQEVRRVLARYDPRFESASIDEAYL 180
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
++TE C G E+ +LR V EE +T SAG+A N LAK+CS+INKPNGQF+L N
Sbjct: 181 NVTEYCATHGADPGEVVAQLRREVLEETRVTVSAGIAANTRLAKICSNINKPNGQFLLQN 240
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
+R A++ F +L RK+ GIG+V E L V GI TC ++ + + +F F +
Sbjct: 241 ERSAILDFTKTLACRKVNGIGRVFERELASV-GIQTCGDIYDQRQYISRLFGEKACHFLV 299
Query: 188 SVGLGLGSTNT-PQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
LGLG T+ P + RKS+ +E TF+ D L ++L A L D+++ +GR
Sbjct: 300 HSYLGLGRTSVQPAEEYERKSVGTESTFTSMSDPGKLRQQLQWTAHELEKDLRRVECKGR 359
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL---KAELP-VSLRLIGLRVTQF 301
TL LKLK +FEV TR V L + + ++D+ K+AS +L + ELP +S+RL+GLR T
Sbjct: 360 TLVLKLKLNTFEVHTRQVILSRAVYLADDLYKYASPMLSKMEQELPGISVRLLGLRCTNL 419
Query: 302 NEDK 305
+
Sbjct: 420 TSTR 423
>gi|268576074|ref|XP_002643017.1| C. briggsae CBR-POLK-1 protein [Caenorhabditis briggsae]
Length = 612
Score = 238 bits (607), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 148/355 (41%), Positives = 199/355 (56%), Gaps = 58/355 (16%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEA-- 65
ARRFGVRA MPGFI++KLCP L VP ++TKY+ S ++F +YD + SLDEA
Sbjct: 125 ARRFGVRAGMPGFISKKLCPNLTLVPGNYTKYSKISRQFSEIFAEYDGDVGMMSLDEAYI 184
Query: 66 --------------------------------------YLDITEV----CR--------- 74
YLD E C
Sbjct: 185 DLTDYVAARTEKRTLKRHRYGGDCPCWLPRVPDSESPEYLDSEESECPKCSKTRKIYYDD 244
Query: 75 -ERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVM 133
E GI EI E+R V ++ GLTCSAG+A N +LAK+CSD NKPNGQ+VL NDR ++
Sbjct: 245 VEFGIGREEIVREIRFRVEQKTGLTCSAGIAANFMLAKICSDFNKPNGQYVLENDREKIL 304
Query: 134 TFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGL 193
F+ LPIRK+GGIG+V+E L+ + I T +MLQK SL FS T + FL LGL
Sbjct: 305 EFLRDLPIRKVGGIGRVSEAHLQSM-DIRTVGDMLQKASLFPLCFSQLTQESFLRTALGL 363
Query: 194 GSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLR-GRTLTLKLK 252
+ RKSIS ERTFS T D +L + +EI ML D++K G+ G+T+TLKLK
Sbjct: 364 PGRPSSSDPRRKSISVERTFSPTADFKILLLEHSEICRMLEEDIRKSGVTGGKTITLKLK 423
Query: 253 TASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQ--FNEDK 305
+SF+V TR++T + +++ EDI K + LL+ E +RL+G+R++Q F E+K
Sbjct: 424 LSSFDVLTRSLTPSEAVTTLEDIQKFSLELLEKERGKEIRLLGVRLSQLVFEEEK 478
>gi|345560473|gb|EGX43598.1| hypothetical protein AOL_s00215g334 [Arthrobotrys oligospora ATCC
24927]
Length = 699
Score = 238 bits (607), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 134/304 (44%), Positives = 181/304 (59%), Gaps = 7/304 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR+ M G IA KLCP+L+F+P +F KY + R+V +YD F AAS DEAYL
Sbjct: 203 ARKFGVRSGMAGHIAIKLCPQLVFLPLNFEKYNAKAKEVREVLSRYDERFEAASCDEAYL 262
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
+IT + E E++R V+E + LT SAG+APN +AK+CS+ NKPNGQF + N
Sbjct: 263 NITPYLERHKLDPEEAVEKMRQEVFERSKLTVSAGIAPNARIAKICSNKNKPNGQFRVGN 322
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
DR AVM+F+ SLP+RK+ G+G+V E L V GI TC ++ L+ +F +F +
Sbjct: 323 DRSAVMSFMKSLPVRKVNGVGRVFERELEAV-GIKTCGDIYPMRGLILKLFGQKAYEFLI 381
Query: 188 SVGLGLGST--NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
SV LGLG T + RKSI SE TF E A L KL + AE L D+ K L+GR
Sbjct: 382 SVFLGLGRTVIRPAEEYIRKSIGSESTFPDLEGTANLREKLRKTAEALEEDLTKTELQGR 441
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL----KAELPVSLRLIGLRVTQF 301
TL LK+K ++E R L I + D+ +A LL + P+ LRL+GLR+T
Sbjct: 442 TLALKVKMFTYEEAIRQKPLPYPIWKAGDVYDYALPLLTKLEEEYKPMKLRLMGLRMTNL 501
Query: 302 NEDK 305
+ K
Sbjct: 502 SSRK 505
>gi|403161534|ref|XP_003321856.2| hypothetical protein PGTG_03393 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375171309|gb|EFP77437.2| hypothetical protein PGTG_03393 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 562
Score = 238 bits (606), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 131/338 (38%), Positives = 195/338 (57%), Gaps = 29/338 (8%)
Query: 14 RAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVC 73
R+AM G+IA KLCP LIFV DF KY SD K+ +YDPN SLDE ++++T C
Sbjct: 101 RSAMAGYIATKLCPRLIFVEPDFKKYNAASDSIMKILRQYDPNLAPNSLDECFMNLTAYC 160
Query: 74 RERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVM 133
R+ +S E +R V ++ GLT SAG+ PN +AK+ +D+NKPNGQF P R M
Sbjct: 161 RDHDLSAAEATSRMRQHVLKDTGLTVSAGIGPNVTIAKIAADLNKPNGQFECPPTRDDAM 220
Query: 134 TFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGL 193
F+ LP+RK+ GIG+VTE L +V G+ C ++ ++ S L + S + D LGL
Sbjct: 221 KFMKDLPVRKVPGIGRVTERWL-EVLGVKKCGDIWEQRSKLLLMKSEVSFDLLSRAYLGL 279
Query: 194 GSTNT--PQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKL 251
G T+ Q R+S+ E +F K ++KL E++E L+ D+ + GRTLTLK+
Sbjct: 280 GQTDIKPSQREDRQSVGCETSFKSLSKKEDFFQKLKELSEELAGDLSRLQFAGRTLTLKI 339
Query: 252 KTASFEVRTRAVTL----QKYISSSEDILKHASVLLKAELP------------------- 288
K +FEV +R+VT Q+++SS+ED+ KHA +LL+ E+
Sbjct: 340 KLDTFEVLSRSVTPAILGQRFLSSAEDLYKHAKLLLEREIESRHSSFDQGKKVPGCNGAR 399
Query: 289 -VSLRLIGLRVTQFNEDKVRAPSDPT--QKTLTNFMTS 323
+S+RL+G++V+ + K R P++ QK ++N TS
Sbjct: 400 DISIRLLGIKVSHLQDQKNRIPANENSLQKWISNPTTS 437
>gi|46109048|ref|XP_381582.1| hypothetical protein FG01406.1 [Gibberella zeae PH-1]
Length = 639
Score = 238 bits (606), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 128/304 (42%), Positives = 186/304 (61%), Gaps = 7/304 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG R+ M GF+A+KLCP LI + +F KYT + R+V YDP F +AS+DEAYL
Sbjct: 173 ARKFGCRSGMAGFVAKKLCPNLILLKPNFQKYTAKAHEVREVLVNYDPRFESASIDEAYL 232
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
+ITE C+E + E+ E++R V+++ +T SAG+A N LAK+CS++NKPNGQ+VL +
Sbjct: 233 NITEYCQEHQMGPAEVVEQMRREVHQKTNITVSAGIAANARLAKICSNMNKPNGQYVLSS 292
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
DR ++ F+ L R + GIG+V E L ++ GI TC ++ + L +F T++F
Sbjct: 293 DRPTILAFMRDLSTRSVNGIGRVLERELLEI-GIKTCGDLYEHRQYLNPLFGEKTSEFLF 351
Query: 188 SVGLGLGSTN-TPQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
+ LGLG T P + RKS+ +E TF D L KL AE L DM++ +GR
Sbjct: 352 TCYLGLGRTKIQPAEEYERKSVGTESTFRDMSDPTQLREKLRSTAEDLEQDMKRAECKGR 411
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHA-SVLLKAE--LP-VSLRLIGLRVTQF 301
TL LK+K +FEV TR L + I ++D+ +A +L K E +P + LRL+GLR T
Sbjct: 412 TLCLKVKLHTFEVFTRQAVLPRAIWLADDLYNYALPILTKLEQDMPGMRLRLMGLRCTHL 471
Query: 302 NEDK 305
+ K
Sbjct: 472 VKTK 475
>gi|449298338|gb|EMC94353.1| hypothetical protein BAUCODRAFT_111160 [Baudoinia compniacensis
UAMH 10762]
Length = 628
Score = 238 bits (606), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 126/300 (42%), Positives = 186/300 (62%), Gaps = 7/300 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++G R+ M GF+A KLCPELI +P +F KYT + R V +YDP F +AS+DEAYL
Sbjct: 163 ARKYGCRSGMAGFVADKLCPELIHLPLNFEKYTAKAKEVRAVLEQYDPRFESASIDEAYL 222
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
+IT+ C++ + E ++R V+E A +T SAG+A N LAK+CS+ NKPNGQ+ LP+
Sbjct: 223 NITQYCQDHDMDPEEAVAQMRAQVFEHAKITISAGIAANAKLAKICSNKNKPNGQYRLPS 282
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
+R +++ F+ LP RK+ GIG+V E L D GI TC ++ ++ L +F +F +
Sbjct: 283 ERTSILIFMRDLPTRKVNGIGRVFEREL-DAIGIKTCGDIYEQRHYLSRLFGDKAFEFLM 341
Query: 188 SVGLGLGSTNT-PQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
SV LGLG T+ P + RKS+ +E TF D L KL AE L D+++ +GR
Sbjct: 342 SVYLGLGRTDVRPVEEYERKSVGTESTFHDISDPKELRDKLRWTAEELEKDLKRTEFKGR 401
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK---AELP-VSLRLIGLRVTQF 301
TL LKLK ++EV +R V K + +++D+ + +L+ E+P + LRL+GLR T
Sbjct: 402 TLVLKLKLHTYEVFSRQVQPPKAVYTADDLYHFSLPMLQKVEKEMPGMKLRLMGLRCTHL 461
>gi|322700161|gb|EFY91917.1| DNA polymerase kappa [Metarhizium acridum CQMa 102]
Length = 501
Score = 237 bits (605), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 123/288 (42%), Positives = 181/288 (62%), Gaps = 6/288 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG R+ M GF+A+KLCP LI + +F KYT + R++ YDP F +AS+DEAYL
Sbjct: 155 ARQFGCRSGMAGFVAKKLCPSLILIKPNFQKYTAKAQEIREILADYDPRFESASIDEAYL 214
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
+ITE C ++ + E+ E++R +Y++ +T SAG+A N LAK+CS+INKPNGQ+VLP+
Sbjct: 215 NITEYCHDKHATPAEVIEQMRREIYQKTDITVSAGIAANTKLAKICSNINKPNGQYVLPS 274
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
DR ++MTF+ LP RK+ GIG+V E L ++ G+ TC ++ + L +F T +F +
Sbjct: 275 DRTSIMTFMRDLPTRKVNGIGRVLERELLEL-GVRTCGDIYEHRKYLNLLFGDKTFEFLI 333
Query: 188 SVGLGLGSTNT-PQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
S LGLG T P + RKSI +E TF D L KL AE L DM++ +GR
Sbjct: 334 SCYLGLGRTRIQPAEEYERKSIGTESTFRELSDPGNLREKLRWTAEELEKDMERVHCKGR 393
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL---LKAELPVS 290
TL LK+K +FEV TR + + I S++++ + + L+ E+P S
Sbjct: 394 TLCLKIKLHTFEVLTRQAVMPRAICSADELYNFSLPILTKLEQEMPES 441
>gi|85092716|ref|XP_959512.1| hypothetical protein NCU02457 [Neurospora crassa OR74A]
gi|28920947|gb|EAA30276.1| hypothetical protein NCU02457 [Neurospora crassa OR74A]
Length = 626
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 125/304 (41%), Positives = 184/304 (60%), Gaps = 7/304 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++G R+ M GF+A+KLCPELI +P F KYT + R++ +YDPNF +AS+DEAYL
Sbjct: 170 ARKYGCRSGMAGFVAKKLCPELILLPISFEKYTAKAGEVREIIAEYDPNFESASIDEAYL 229
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
+IT+ C ++ + ++R ++E +T SAG+A N LAK+CS++NKPNGQ+VLP+
Sbjct: 230 NITDYCTRHAMAPADAVAKMRNDIHERTSITVSAGIAANTRLAKICSNMNKPNGQYVLPS 289
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
+R+A++ F+ LP RK+ GIG+V E L GI+T ++ L +F ++F L
Sbjct: 290 ERVAILEFMRDLPCRKVNGIGRVFEREL-AALGIHTLGDIYSNRQYLRNLFGEKASEFLL 348
Query: 188 SVGLGLGSTNTPQARF--RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
LGLG T A RKS+ +E TF D L KL +E L D+++ +GR
Sbjct: 349 HCFLGLGRTCVKPAETYERKSVGTESTFRDMSDPTELRNKLRRTSEDLEQDLRRAECKGR 408
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLRLIGLRVTQF 301
TL LK+K +FEV TR L + + + D+ KHA + L+ E+P + LRL+GLR T
Sbjct: 409 TLCLKVKLHTFEVLTRQTVLPRAVHLATDLYKHALPMLTKLEQEIPGMKLRLMGLRCTNL 468
Query: 302 NEDK 305
K
Sbjct: 469 ATTK 472
>gi|346322241|gb|EGX91840.1| DNA-directed polymerase kappa [Cordyceps militaris CM01]
Length = 641
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 129/300 (43%), Positives = 180/300 (60%), Gaps = 7/300 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FG R+ M GF+A+KLCP+L+ + +F KYT R V YD F +AS+DEAYL
Sbjct: 172 AREFGCRSGMAGFVAKKLCPQLVLIKPNFEKYTAKGKEVRGVLADYDARFESASIDEAYL 231
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
+ITE C +S E+ E+LR V+E+ +T SAG+A N LAK+CS++NKPNGQ+VL
Sbjct: 232 NITEYCVTHNMSAPEVVEQLRKEVHEKTNITVSAGIAANSRLAKICSNLNKPNGQYVLGR 291
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
+R +MTFI LP RKI GIG+V E L +V GI C ++ + L +F T +F +
Sbjct: 292 ERNEIMTFIRDLPTRKIPGIGRVLERELLEV-GIKNCGDIYEHRQYLHRLFGDKTFEFLM 350
Query: 188 SVGLGLGSTN-TPQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
LGLG T+ P + RKS+ +E TF D L KL AE L DM++ +GR
Sbjct: 351 GCYLGLGRTSIQPAEEYERKSVGTESTFREISDPKKLREKLRATAEDLEGDMKRAACKGR 410
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLRLIGLRVTQF 301
TL LK+K +FEV TR V + + ++D+ + + L+ E+P + LRL+GLR T
Sbjct: 411 TLCLKIKLHTFEVYTRQVVTPRALCLADDLYNFSLPMLTKLEQEMPGMKLRLMGLRCTHL 470
>gi|440633626|gb|ELR03545.1| hypothetical protein GMDG_01296 [Geomyces destructans 20631-21]
Length = 625
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 128/300 (42%), Positives = 184/300 (61%), Gaps = 7/300 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG R+ M GF+ARKLCPELI +P +F KYT + R++ +YDP F +AS+DEAYL
Sbjct: 149 ARKFGCRSGMAGFVARKLCPELIQLPLNFEKYTAKAREVREIIARYDPRFESASIDEAYL 208
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
+IT C I E E+LR V+E+ +T SAG+A N LAK+CS++NKPNGQ+ L N
Sbjct: 209 NITTYCESNNIGPDEAVEQLRQEVHEKTKITISAGIAANTKLAKICSNMNKPNGQYRLQN 268
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
+R A++ F+++LP RK+ G+G+V E L D G+ TC ++ Q L +F F +
Sbjct: 269 NRGAIIAFMNTLPTRKVNGVGRVFEREL-DAVGVKTCGDIYQYRQYLSRLFGEKAFSFLI 327
Query: 188 SVGLGLGSTNT-PQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
LGLG T+T P + RKS+ +E TF L KL + A+ L DM K ++GR
Sbjct: 328 HCYLGLGRTDTQPAEEYERKSVGTESTFGDLSSHKGLRDKLEKTAQDLEKDMVKAQVKGR 387
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHA-SVLLKAELP---VSLRLIGLRVTQF 301
TL LK+K ++EV TR + K + + D+ K++ +L K E ++LRL+GLR T
Sbjct: 388 TLVLKVKLHTYEVLTRQIIPPKAVYLAPDLYKYSLPMLSKLEQEFKGLALRLMGLRCTHL 447
>gi|402086039|gb|EJT80937.1| DNA polymerase kappa [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 624
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 127/300 (42%), Positives = 184/300 (61%), Gaps = 7/300 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG+R+ M GF+A+K+CPEL+ + +F KY + R+V +YD F +AS+DEAYL
Sbjct: 151 ARKFGIRSGMAGFVAKKICPELVLLKLNFDKYNAKAAEVREVLAEYDARFESASIDEAYL 210
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
+IT+ C + G+ ++ +++R V+ +T SAG+A N LAK+CS++NKPNGQFVLPN
Sbjct: 211 NITQYCADHGMGPADVVQQMRAEVHRRTSITVSAGIAANAKLAKICSNMNKPNGQFVLPN 270
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
+R A+M F+ SLP RK+ GIG+V E L + G+ TC ++ + L +F F +
Sbjct: 271 ERPAIMEFMGSLPCRKVNGIGRVLERELAAI-GVVTCGDVYPERKYLTKLFGEKAFRFLV 329
Query: 188 SVGLGLGSTNT-PQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
LGLG T P + RKS+ +E TFS L K+ A L DM+K RGR
Sbjct: 330 DCYLGLGRTIIRPAEEYERKSVGTESTFSDISGGQKLREKMRWTAGELEKDMKKAECRGR 389
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLRLIGLRVTQF 301
TL LK+K A+FEV TR V L + I ++D+ K A + L+ E P ++ RL+GLR T
Sbjct: 390 TLVLKVKLATFEVLTRQVILPRSIQLADDLYKFALPMLAKLEKEFPRLTCRLLGLRCTNL 449
>gi|296413468|ref|XP_002836435.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295630254|emb|CAZ80626.1| unnamed protein product [Tuber melanosporum]
Length = 606
Score = 236 bits (601), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 146/401 (36%), Positives = 222/401 (55%), Gaps = 37/401 (9%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FGVR+ M G+IA++LCP+L+F+P F KYT ++ R++ KYD + AAS+DEA+L
Sbjct: 148 ARGFGVRSGMAGYIAKQLCPQLVFLPLSFHKYTAKAEEIREILVKYDGRYEAASVDEAFL 207
Query: 68 DITEVCRE-RGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP 126
+IT + R + ++ E+LR V E ++ SAG+APN LAKV S+ NKPNGQF +P
Sbjct: 208 NITGYLEDHRDTTPDKVVEQLRREVLEHTKISVSAGIAPNARLAKVASNQNKPNGQFRIP 267
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFF 186
NDR AVM F+ +LP+R++ G+G+V E L D G+ T ++ +L +FS F
Sbjct: 268 NDREAVMHFMRTLPVRRVNGVGRVFEREL-DAVGVRTWGDVFALRGILSKLFSKKAWSFL 326
Query: 187 LSVGLGLGSTNT-PQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRG 244
L+ LGLG T P A + RKS+ +E TF L KL A+ L D+ L G
Sbjct: 327 LNSYLGLGRTCIHPVAEYERKSLGTESTFKDLSGPGPLRDKLRSTAQELERDLLAANLAG 386
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL-----PVSLRLIGLRVT 299
RT+T+K+K +++V +R L + ISS+ED+ HA LL+ EL P +RL+GLRVT
Sbjct: 387 RTITVKVKLHTYQVHSRQKALHRVISSAEDLYNHALPLLQ-ELEGEFQPFKIRLMGLRVT 445
Query: 300 QFN-------------------EDKVRAPSDPTQKTLTNFMTSGHASKKI-----VGDQN 335
Q + E + + P + +L ++SGH S+++ + +
Sbjct: 446 QLSSTRKGTGKMNFFKNLPQSIEGEAEWEAWP-EGSLDGLLSSGHLSQEVQDEEQLAIEE 504
Query: 336 SLGSDINDDCLIDDKETSVSLDVSETNNYEFGDPVCDNSLP 376
+L + +N ++ S + +E P+C SLP
Sbjct: 505 ALNASLNMPARDTPQDPSPPPKMVLKERWEC--PICARSLP 543
>gi|242780241|ref|XP_002479554.1| DNA-directed polymerase kappa, putative [Talaromyces stipitatus
ATCC 10500]
gi|218719701|gb|EED19120.1| DNA-directed polymerase kappa, putative [Talaromyces stipitatus
ATCC 10500]
Length = 654
Score = 236 bits (601), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 123/300 (41%), Positives = 186/300 (62%), Gaps = 7/300 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG R+ M GF+A+KLCP+LI +P ++ KY+ ++ R +F +YDP F +AS+DEAYL
Sbjct: 158 ARKFGCRSGMAGFVAKKLCPDLICIPQNYEKYSAKAEEIRAIFAQYDPCFESASIDEAYL 217
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
+IT C E + E +++R + EE +T SAG+A N LAK+ S+ NKPNGQ+ +P+
Sbjct: 218 NITAYCDENNMDPQEAVQQMRARIAEETKITVSAGIATNTKLAKIASNQNKPNGQYFIPS 277
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
+R A+M+F+ LP+RK+ GIG+V E LR V GI TC ++ + +LL +F F +
Sbjct: 278 EREAIMSFVKDLPVRKVNGIGRVFERELRAV-GIETCGQIYPQRALLKRLFGGKAFQFLM 336
Query: 188 SVGLGLGSTNTPQAR--FRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
LGLG T A RKS+ +E TF+ D + KL A+ L+ D+ + +GR
Sbjct: 337 QCYLGLGRTKIQPAEDYERKSVGTESTFAEISDPDAIRVKLRWAADELAKDLARTQFKGR 396
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLRLIGLRVTQF 301
TL LK+K +FEV TR V K + ++D+ ++ + L+ E+P + LRL+GLR T
Sbjct: 397 TLVLKVKLHTFEVYTRQVAPPKAVWLADDLYTYSLPILAKLQKEIPNMRLRLLGLRCTHL 456
>gi|406859501|gb|EKD12565.1| impB/mucB/samB family protein [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 613
Score = 236 bits (601), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 127/300 (42%), Positives = 178/300 (59%), Gaps = 7/300 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG R+ M GF+A+KLCP+LI +P +F KYT + R++ YDP F +AS+DEAYL
Sbjct: 141 ARKFGCRSGMAGFVAKKLCPQLIQIPLNFDKYTAKAQEVREIIVDYDPRFESASIDEAYL 200
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
+ITE C++ +S + ++LR V+E+ +T SAG+A N LAK+CS++NKPNGQF LP
Sbjct: 201 NITEYCQKNDMSPEDAVQQLRREVHEKTKITISAGIAANAKLAKICSNLNKPNGQFQLPI 260
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
+R A+M F+ LP RK+ GIG+V E L D GI TC ++ L +F F +
Sbjct: 261 ERSAIMAFMRDLPTRKVNGIGRVFEREL-DAVGIKTCGDIYTYRQYLSKLFGEKAFGFLM 319
Query: 188 SVGLGLGSTNTPQAR--FRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
LGLG T A RKS+ +E TF L +L AE L DM + +GR
Sbjct: 320 QCYLGLGRTRIQPAEDYERKSVGTESTFGEMSKPTELRERLRATAEELEKDMIRTQFKGR 379
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLRLIGLRVTQF 301
TL LK+K ++EV TR V K + +ED+ + + L+ E P + LRL+GLR T
Sbjct: 380 TLCLKVKLHTYEVFTRQVVPPKAVYLAEDLYNYGVPMLSKLEQEFPGLRLRLMGLRCTHL 439
>gi|336467327|gb|EGO55491.1| hypothetical protein NEUTE1DRAFT_85852 [Neurospora tetrasperma FGSC
2508]
gi|350288043|gb|EGZ69279.1| DNA/RNA polymerase [Neurospora tetrasperma FGSC 2509]
Length = 646
Score = 235 bits (600), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 124/304 (40%), Positives = 184/304 (60%), Gaps = 7/304 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++G R+ M GF+A+KLCPELI +P F KYT + R++ +YDPNF +AS+DEAYL
Sbjct: 170 ARKYGCRSGMAGFVAKKLCPELILLPISFDKYTAKAGEVREIIAEYDPNFESASIDEAYL 229
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
+IT+ C ++ + ++R+ ++E +T SAG+A N LAK+CS++NKPNGQ+VLP+
Sbjct: 230 NITDYCTRHAMAPADAVAKMRSDIHERTSITVSAGIAANTRLAKICSNMNKPNGQYVLPS 289
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
+R A++ F+ LP RK+ GIG+V E L GI+T ++ L +F ++F +
Sbjct: 290 ERGAILEFMRDLPCRKVNGIGRVFEREL-AALGIHTLGDIYSNRQYLRNLFGEKASEFLV 348
Query: 188 SVGLGLGSTNTPQARF--RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
LGLG T A RKS+ +E TF V D L KL +E L D+++ +GR
Sbjct: 349 HCFLGLGRTCVKPAETYERKSVGTESTFRVMSDPTELRNKLRRTSEDLEQDLRRAECKGR 408
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLRLIGLRVTQF 301
TL LK+K +FEV TR L + + + D+ HA + L+ E+P + LRL+GLR T
Sbjct: 409 TLCLKVKLHTFEVLTRQTVLPRAVHLATDLYSHALPMLTKLEQEIPGMKLRLMGLRCTNL 468
Query: 302 NEDK 305
K
Sbjct: 469 ATTK 472
>gi|348688715|gb|EGZ28529.1| hypothetical protein PHYSODRAFT_552269 [Phytophthora sojae]
Length = 608
Score = 235 bits (600), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 132/325 (40%), Positives = 181/325 (55%), Gaps = 34/325 (10%)
Query: 7 SARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAY 66
+AR+FGVRAAMPGFI ++LCPEL FVP + KY + R VF +YDPNF A SLDEA
Sbjct: 125 AARQFGVRAAMPGFIGKELCPELHFVPVNMEKYAGVAAQVRAVFAQYDPNFEAFSLDEAC 184
Query: 67 LDITEVCRERGISGIEIA--------------------------------EELRTSVYEE 94
LD+T+ + +A ELR +++
Sbjct: 185 LDLTDYVAKNWQKYASVALDDFESKEEVQEEEEQWPSTPAGRAAIAAAVVRELRQKIFDC 244
Query: 95 AGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHI 154
LT SAG+A N +LAK+CSD+NKPNGQ+VLP R V+TF+ LP+RKIGGIGKVTE I
Sbjct: 245 TQLTASAGIAVNAMLAKICSDMNKPNGQYVLPFTRERVLTFLCDLPVRKIGGIGKVTEKI 304
Query: 155 LRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS 214
L + G++T E+ + + +F+ TA + L LG+ Q RKS S ERTF
Sbjct: 305 LNEALGVHTGGELFNQRGKIFHLFTEKTAVWLLQTSLGVRERREKQE--RKSFSRERTFR 362
Query: 215 VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSED 274
D L K E+ +ML+ D++K + +T K F +R+VTL I ++ED
Sbjct: 363 SLSDPKELEAKCLEVCKMLAKDLEKANKAAKNVTFVYKDTDFARCSRSVTLASAIFTAED 422
Query: 275 ILKHASVLLKAELPVSLRLIGLRVT 299
+ A LL+ ELP++LRL+G+R
Sbjct: 423 LYSSAVELLRRELPLTLRLLGVRAA 447
>gi|408391946|gb|EKJ71312.1| hypothetical protein FPSE_08551 [Fusarium pseudograminearum CS3096]
Length = 639
Score = 235 bits (599), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 124/300 (41%), Positives = 183/300 (61%), Gaps = 7/300 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG R+ M GF+A+KLCP LI + +F KYT + R+V YDP F +AS+DEAYL
Sbjct: 173 ARKFGCRSGMAGFVAKKLCPNLILLKPNFQKYTAKAHEVREVLVNYDPRFESASIDEAYL 232
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
+ITE C+E + E+ E++R V+++ +T SAG+A N LAK+CS++NKPNGQ+VL +
Sbjct: 233 NITEYCQEHQMGPAEVVEQMRREVHQKTNITVSAGIAANARLAKICSNMNKPNGQYVLSS 292
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
DR ++ F+ L R + GIG+V E L ++ I TC ++ + L +F T++F
Sbjct: 293 DRPTILAFMRDLSTRSVNGIGRVLERELLEI-DIKTCGDLYEHRQYLNPLFGEKTSEFLF 351
Query: 188 SVGLGLGSTN-TPQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
+ LGLG T P + RKS+ +E TF D L KL AE L DM++ +GR
Sbjct: 352 TCYLGLGRTKIQPAEEYERKSVGTESTFRDMSDPTQLREKLRSTAEDLEQDMKRAECKGR 411
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLRLIGLRVTQF 301
TL LK+K +FEV TR L + I ++D+ +A + L+ ++P + LRL+GLR T
Sbjct: 412 TLCLKVKLHTFEVFTRQAVLPRAIWLADDLYNYALPILTKLEQDMPGMRLRLMGLRCTHL 471
>gi|392570399|gb|EIW63572.1| DNA/RNA polymerase [Trametes versicolor FP-101664 SS1]
Length = 638
Score = 234 bits (598), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 133/325 (40%), Positives = 190/325 (58%), Gaps = 15/325 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR+ M F+A+KLCPELI + + + Y S+ +F +YDP AA DE YL
Sbjct: 146 ARKFGVRSGMATFVAKKLCPELIVLKSHYEWYNEMSNKVMSIFRRYDPTMCAAGCDEGYL 205
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
+IT C E +S E ++R+ V EE LT SAG+APN+ NKPNGQF L
Sbjct: 206 NITNYCEEHSLSPEECVSQMRSVVQEETMLTVSAGIAPNK---------NKPNGQFKLDF 256
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
D AV F+ L IRK+ G+G+V E +L D G+ TC ++ + ++L + H +F L
Sbjct: 257 DPDAVKKFMYDLSIRKVPGVGRVHERLL-DSIGVKTCGDVYEHRAVLFLLDKHFGLEFLL 315
Query: 188 SVGLGLGS--TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
LG+ S Q RKSI +ERTF+ D A +Y KL E+A L ADM++ G G+
Sbjct: 316 QAYLGIASNVVQPGQREERKSIGAERTFNALSDTAKIYAKLEEVAAELEADMEESGWTGK 375
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISS-SEDILKHASVLLKAELPVSLRLIGLRVTQFNED 304
T+TLK K +F+V TRA + ++IS+ ED+ LLK ELP++LRLIGLRVT+ +
Sbjct: 376 TITLKYKLDTFQVFTRAKSFDRWISTKKEDLFAIGQELLKPELPLTLRLIGLRVTKLKD- 434
Query: 305 KVRAPSDPTQKTLTNFMTSGHASKK 329
++A + + + F + +S K
Sbjct: 435 -LKAEVESKARGIKRFFEAAPSSPK 458
>gi|261188840|ref|XP_002620833.1| DNA-directed polymerase kappa [Ajellomyces dermatitidis SLH14081]
gi|239591975|gb|EEQ74556.1| DNA-directed polymerase kappa [Ajellomyces dermatitidis SLH14081]
Length = 605
Score = 234 bits (598), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 127/300 (42%), Positives = 178/300 (59%), Gaps = 7/300 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++G R+ M GFIA+KLCP+LI +P ++ KYT +D R + YDP F ++SLDEAYL
Sbjct: 153 ARKYGCRSGMAGFIAKKLCPDLILIPQNYQKYTAKADEIRAILACYDPQFQSSSLDEAYL 212
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
+IT C I E LR+ V E+ ++ S G+APN LAK+CS+ NKPNGQ +PN
Sbjct: 213 NITAYCSANEIEPEEAVRRLRSEVVEKTKVSISGGIAPNARLAKICSNWNKPNGQHYVPN 272
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
+R A+M F+S++P+R I G+G+V E L D GI C ++ L+ +F F +
Sbjct: 273 ERSAIMKFMSAIPLRNINGVGRVFEREL-DAIGIKYCRDIFTHRGLILPLFGEKCYRFLM 331
Query: 188 SVGLGLGSTNTP--QARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
LGLG T + RKS+ +ERTF T + A L KL A L DM + +GR
Sbjct: 332 QCYLGLGRTKIQPIEESERKSVGTERTFRDTGNVADLQEKLQLTALELEKDMLRTQFKGR 391
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHA---SVLLKAELP-VSLRLIGLRVTQF 301
TL LK+K +FEV +R + L K + SED+ ++A V L E P + +RL+GLR T
Sbjct: 392 TLVLKVKLHTFEVLSRQMLLPKAVYLSEDLYRYALPMLVKLYKETPNLKIRLMGLRCTNL 451
>gi|212526212|ref|XP_002143263.1| DNA-directed polymerase kappa, putative [Talaromyces marneffei ATCC
18224]
gi|210072661|gb|EEA26748.1| DNA-directed polymerase kappa, putative [Talaromyces marneffei ATCC
18224]
Length = 647
Score = 234 bits (597), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 123/300 (41%), Positives = 185/300 (61%), Gaps = 7/300 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG R+ M GF+A+KLCP+LI +P ++ KYT ++ R +F +YDP F +AS+DEAYL
Sbjct: 156 ARKFGCRSGMAGFVAKKLCPDLICIPQNYEKYTAKAEEIRAIFVEYDPCFESASIDEAYL 215
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
+IT C E + E +++R+ + +E +T SAG+A N LAK+ S+ NKPNGQF +P+
Sbjct: 216 NITAYCDENDMDPQEAVQQMRSRIADETKITVSAGIAANTKLAKIASNQNKPNGQFYIPS 275
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
+R A+M F+ LP+RK+ GIG+V E LR + GI TC ++ + L +F F +
Sbjct: 276 EREAIMAFVKDLPVRKVNGIGRVFERELRAI-GIETCGQIYPHRASLKRLFGEKAFHFLM 334
Query: 188 SVGLGLGSTN-TPQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
LGLG T P + RKS+ +E TFS D + KL A+ L+ D+ + +GR
Sbjct: 335 QCHLGLGRTKIQPAVDYERKSVGTESTFSEISDPDAIRAKLRWAADELARDLSRTQFKGR 394
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLRLIGLRVTQF 301
TL LK+K +FEV TR V K + ++D+ ++ + L+ E+P + LRL+GLR T
Sbjct: 395 TLVLKIKLHTFEVYTRQVAPPKAVWLADDLYTYSLPILAKLQKEIPNMRLRLLGLRCTHL 454
>gi|239615336|gb|EEQ92323.1| DNA-directed polymerase kappa [Ajellomyces dermatitidis ER-3]
Length = 605
Score = 234 bits (597), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 127/300 (42%), Positives = 178/300 (59%), Gaps = 7/300 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++G R+ M GFIA+KLCP+LI +P ++ KYT +D R + YDP F ++SLDEAYL
Sbjct: 153 ARKYGCRSGMAGFIAKKLCPDLILIPQNYQKYTAKADEIRAILACYDPQFQSSSLDEAYL 212
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
+IT C I E LR+ V E+ ++ S G+APN LAK+CS+ NKPNGQ +PN
Sbjct: 213 NITAYCSANEIEPEEAVRRLRSEVVEKTKVSISGGIAPNARLAKICSNWNKPNGQHYVPN 272
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
+R A+M F+S++P+R I G+G+V E L D GI C ++ L+ +F F +
Sbjct: 273 ERSAIMKFMSAIPLRNINGVGRVFEREL-DAIGIKYCRDIFTHRGLILPLFGEKCYRFLM 331
Query: 188 SVGLGLGSTNTP--QARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
LGLG T + RKS+ +ERTF T + A L KL A L DM + +GR
Sbjct: 332 QCYLGLGRTKIQPIEESERKSVGTERTFRDTGNVADLQEKLQLTALELEKDMLRTQFKGR 391
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHA---SVLLKAELP-VSLRLIGLRVTQF 301
TL LK+K +FEV +R + L K + SED+ ++A V L E P + +RL+GLR T
Sbjct: 392 TLVLKVKLHTFEVLSRQMLLPKAVYLSEDLYRYALPMLVKLYKETPNLKIRLMGLRCTNL 451
>gi|327357690|gb|EGE86547.1| DNA-directed polymerase kappa [Ajellomyces dermatitidis ATCC 18188]
Length = 565
Score = 234 bits (597), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 127/300 (42%), Positives = 178/300 (59%), Gaps = 7/300 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++G R+ M GFIA+KLCP+LI +P ++ KYT +D R + YDP F ++SLDEAYL
Sbjct: 153 ARKYGCRSGMAGFIAKKLCPDLILIPQNYQKYTAKADEIRAILACYDPQFQSSSLDEAYL 212
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
+IT C I E LR+ V E+ ++ S G+APN LAK+CS+ NKPNGQ +PN
Sbjct: 213 NITAYCSANEIEPEEAVRRLRSEVVEKTKVSISGGIAPNARLAKICSNWNKPNGQHYVPN 272
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
+R A+M F+S++P+R I G+G+V E L D GI C ++ L+ +F F +
Sbjct: 273 ERSAIMKFMSAIPLRNINGVGRVFEREL-DAIGIKYCRDIFTHRGLILPLFGEKCYRFLM 331
Query: 188 SVGLGLGSTNTP--QARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
LGLG T + RKS+ +ERTF T + A L KL A L DM + +GR
Sbjct: 332 QCYLGLGRTKIQPIEESERKSVGTERTFRDTGNVADLQEKLQLTALELEKDMLRTQFKGR 391
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHA---SVLLKAELP-VSLRLIGLRVTQF 301
TL LK+K +FEV +R + L K + SED+ ++A V L E P + +RL+GLR T
Sbjct: 392 TLVLKVKLHTFEVLSRQMLLPKAVYLSEDLYRYALPMLVKLYKETPNLKIRLMGLRCTNL 451
>gi|400601997|gb|EJP69622.1| impB/mucB/samB family protein [Beauveria bassiana ARSEF 2860]
Length = 638
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 126/300 (42%), Positives = 181/300 (60%), Gaps = 7/300 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG R+ M GF+A+KLCP+LI + +FTKYT R+V YD F +AS+DEAYL
Sbjct: 172 ARQFGCRSGMAGFVAKKLCPQLILIKPNFTKYTAKGREVREVLADYDARFESASIDEAYL 231
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
+ITE C G+ E+ E+LR V+E+ +T SAG+A N LAK+CS+ NKPNGQ+VL +
Sbjct: 232 NITEYCVAHGMGPAEVVEQLRKEVHEKTNITVSAGIAANSRLAKICSNFNKPNGQYVLSH 291
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
+R ++ F+ LP RKI GIG+V E L ++ GI C ++ + L +F T +F +
Sbjct: 292 ERNEIVAFMRDLPTRKIPGIGRVLERELLEI-GIKNCGDIYEHRQYLHRLFGDKTFEFLI 350
Query: 188 SVGLGLGSTN-TPQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
LGLG T P + RKS+ +E TF L KL AE L D+++ +GR
Sbjct: 351 GCYLGLGRTKIQPAEEYERKSVGTESTFREMSHPTALREKLRATAEDLEGDLKRAECKGR 410
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLRLIGLRVTQF 301
TL LK+K +FEV TR V + + ++D+ +A + L+ E+P + LRL+GLR T
Sbjct: 411 TLCLKIKLHTFEVYTRQVVPPRAVHLADDLYNYALPMLAKLEQEMPGMKLRLMGLRCTHL 470
>gi|398412111|ref|XP_003857385.1| hypothetical protein MYCGRDRAFT_107195 [Zymoseptoria tritici
IPO323]
gi|339477270|gb|EGP92361.1| hypothetical protein MYCGRDRAFT_107195 [Zymoseptoria tritici
IPO323]
Length = 653
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 124/300 (41%), Positives = 181/300 (60%), Gaps = 7/300 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG R+ M GF+A +LCPELI +P +F KYT + R V +YDP F ++S+DEAYL
Sbjct: 167 ARKFGCRSGMAGFVADQLCPELIHIPLNFEKYTAKAKEVRSVLEQYDPRFESSSIDEAYL 226
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
+IT+ C++ +S + ++R V+EE +T SAG+A N LAK+CS+ NKPNGQ+ LP+
Sbjct: 227 NITQYCKKHDMSPEDAVSQMRAQVFEETKITVSAGIAANAKLAKICSNKNKPNGQYRLPS 286
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
DR +M F+ LP RK+ G+G+V E L D GI TC ++ + + +F +F +
Sbjct: 287 DRTTIMGFMRDLPTRKVNGVGRVLEREL-DAIGIKTCGDIGPQRHYINRLFGEKAFEFLM 345
Query: 188 SVGLGLGSTNTPQA--RFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
V LGLG T A RKS+ +E TF D L KL I++ L D+Q+ +GR
Sbjct: 346 GVHLGLGRTEVRPAGETERKSVGTESTFHDMSDPKELRDKLRWISDELEKDLQRTEFKGR 405
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHA---SVLLKAELP-VSLRLIGLRVTQF 301
TL LK+K ++EV TR K + +++D+ V L++E P + LRL+GLR T
Sbjct: 406 TLVLKVKLHTYEVLTRQFQPPKAVYTADDLYHFGLPMLVKLESEHPGMKLRLMGLRCTHL 465
>gi|452848121|gb|EME50053.1| hypothetical protein DOTSEDRAFT_164998 [Dothistroma septosporum
NZE10]
Length = 640
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 125/300 (41%), Positives = 182/300 (60%), Gaps = 7/300 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG R+ M GF+A KLCP+LI +P +F KYT + R V +YDP F +AS+DEAYL
Sbjct: 171 ARKFGCRSGMAGFVADKLCPQLIHLPLNFEKYTSKAKEVRAVLEQYDPRFESASIDEAYL 230
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
++T+ C E + + ++R V++E +T SAG+A N LAK+CS+ NKPNGQF LP
Sbjct: 231 NLTQYCEEHHMEPEDAVSQMRAQVFQETRITISAGIAANAKLAKICSNKNKPNGQFKLPA 290
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
DR +++ F+ +L RK+ GIG+V E L D GI TC ++ + + +F T +F +
Sbjct: 291 DRASILHFMRNLSTRKVNGIGRVLEREL-DAIGIKTCGDIFPQRHYINRLFGEKTFEFLM 349
Query: 188 SVGLGLGSTNT-PQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
V LGLG T+ P F RKS+ +E +F D L KL AE L D+Q+ +GR
Sbjct: 350 GVHLGLGRTDVRPIEEFGRKSVGTESSFKDISDPNELRDKLRWTAEELEKDLQRTEFKGR 409
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK---AELP-VSLRLIGLRVTQF 301
TL LK+K ++EV TR V K + +++D+ + +L+ E P + LRL+GLR T
Sbjct: 410 TLCLKVKLHTYEVFTRQVQPPKAVYTADDLYNFSLPMLQKLEQEFPNMKLRLMGLRCTHL 469
>gi|388582806|gb|EIM23110.1| DNA/RNA polymerase [Wallemia sebi CBS 633.66]
Length = 499
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 122/296 (41%), Positives = 182/296 (61%), Gaps = 3/296 (1%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG+R+AMP FIA KLC I VP +Y S ++F ++D N AASLDEAYL
Sbjct: 39 ARKFGIRSAMPCFIAHKLCDHFIEVPMRMDRYVEKSRQVMEIFSRFDENMAAASLDEAYL 98
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
++T E G++ E++++LR V E GLT S G+APN+ LAK+CSD NKPNG+F +
Sbjct: 99 NVTSYMNEHGLTPEEVSQQLRKMVECETGLTVSTGIAPNKTLAKICSDKNKPNGEFTMQF 158
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
+ V++F+ LPIRK+ GIG++ E +++ + GI TC ++L L + +D L
Sbjct: 159 YKDTVVSFMKDLPIRKVPGIGRINERLVQSL-GIETCGDILNHKVELYLLRKELQSDGLL 217
Query: 188 SVGLGLGSTNTPQARF--RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
LG+ S A+ RKS+ E+TF D +L KL + + L D+++ GR
Sbjct: 218 RANLGIFSNTVAPAKKEDRKSVGIEKTFQPIFDTKVLMEKLKILCKELEGDLKRTQFEGR 277
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQF 301
T+TLK K +FE TR+ ++ K++S SE+I A LL+ ELP++LRL+G+R+T
Sbjct: 278 TVTLKYKKDTFENFTRSTSVHKFLSQSEEIWPVAKGLLERELPLTLRLMGVRLTNL 333
>gi|336260609|ref|XP_003345098.1| hypothetical protein SMAC_07389 [Sordaria macrospora k-hell]
gi|380096554|emb|CCC06602.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 636
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 123/296 (41%), Positives = 184/296 (62%), Gaps = 7/296 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++G R+ M GF+A+KLCP+LI +P +F KYT + R++ +YDPNF +AS+DEAYL
Sbjct: 170 ARKYGCRSGMAGFVAKKLCPDLILLPINFDKYTAKAGEVREIIAEYDPNFESASIDEAYL 229
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
+IT+ C ++ + ++R+ ++E+ G+ SAG+A N LAK+CS++NKPNGQ+VLP+
Sbjct: 230 NITDYCTRHTMTAADAVSKMRSEIHEKTGIPVSAGIAANTRLAKICSNMNKPNGQYVLPS 289
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
+R A+M F+ LP RK+ GIG+V E L V GI+T ++ L +F +F +
Sbjct: 290 ERAAIMEFMRDLPSRKVNGIGRVFERELAAV-GIHTLGDIHPNRQYLRQLFGEKAFEFLI 348
Query: 188 SVGLGLGSTNTPQARF--RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
LGLG T A RKS+ +E TF D L KL AE L D+++ +GR
Sbjct: 349 HCYLGLGRTCVKPAETYERKSVGTEGTFRDMSDPTELRSKLCRTAEDLEQDLRRAECKGR 408
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLRLIGLR 297
TL LK+K +FEV TR V L + + + D+ +A + L+ E+P + LRL+GLR
Sbjct: 409 TLCLKVKLHTFEVLTRQVVLPRAVYLAADLYNYALPMLTKLEQEIPGMKLRLMGLR 464
>gi|121709435|ref|XP_001272419.1| DNA-directed polymerase kappa, putative [Aspergillus clavatus NRRL
1]
gi|119400568|gb|EAW10993.1| DNA-directed polymerase kappa, putative [Aspergillus clavatus NRRL
1]
Length = 600
Score = 232 bits (591), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 132/332 (39%), Positives = 190/332 (57%), Gaps = 16/332 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++G R+ M F+A KLCP LI +P ++ KYT + R +F +YDP F +AS+DEAYL
Sbjct: 154 ARKYGCRSGMATFVAMKLCPHLICLPQNYEKYTAKAQEIRAIFAQYDPLFESASIDEAYL 213
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
+IT C E + E +R V E+ + SAG+A N +AK+ S+ NKPNGQF +PN
Sbjct: 214 NITSYCNENNLDPEEAVSRMRAEVLEKTKIFVSAGIAANAKIAKISSNRNKPNGQFRVPN 273
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
DR AVM F+ LP+RK+ G+G+V E L D GI +C ++ + + L +F F +
Sbjct: 274 DRDAVMEFMKELPVRKVNGVGRVFEREL-DAIGIKSCGDIWPQRAYLTRLFGEKAFQFLI 332
Query: 188 SVGLGLGSTN-TPQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
LGLG T P ++ RKS+ +ERTF+ DK LL KL + A+ L D+ + +GR
Sbjct: 333 QCYLGLGRTQIQPVEKYERKSVGTERTFNELGDKQLLRGKLWDTAQELEKDLARNECKGR 392
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLRLIGLRVTQF 301
TL LK+K ASFEV +R + +S ++D+ A + L+ E+P + LRL+GLR T
Sbjct: 393 TLVLKVKLASFEVLSRQCQPPRALSLAKDLHSFALPMLAKLEREIPNMKLRLLGLRCTNL 452
Query: 302 NEDKVRAPSDPTQKTLTNFMTSGHASKKIVGD 333
T+K NF K + GD
Sbjct: 453 VS---------TKKVEVNFFGPPLRPKSLSGD 475
>gi|453088846|gb|EMF16886.1| DNA-directed polymerase kappa [Mycosphaerella populorum SO2202]
Length = 660
Score = 231 bits (590), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 120/300 (40%), Positives = 182/300 (60%), Gaps = 7/300 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++G R+ M GF+A KLCP+LI VP +F KYT + R V +YDP F +AS+DEAYL
Sbjct: 153 ARKYGCRSGMAGFVADKLCPQLIHVPLNFEKYTAKARQVRAVLEQYDPRFESASIDEAYL 212
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
+IT+ C++ + + ++R V++E +T SAG+A N LAK+CS+ NKPNGQF LP+
Sbjct: 213 NITKYCQDHNMDPEDAVSQMREQVFQETKITISAGIAANAKLAKICSNKNKPNGQFKLPS 272
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
+R +++F+ LP RK+ GIG+V E L D G+ TC ++ + +F +F +
Sbjct: 273 ERTTILSFMRDLPTRKVNGIGRVLEREL-DAIGVKTCGDIYSHRQYINRLFGEKAFEFLM 331
Query: 188 SVGLGLGSTNTPQA--RFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
V LGLG T+ A R+S+ +E TF D L KL AE L D+++ +GR
Sbjct: 332 GVYLGLGRTDVKPAEEHARRSVGTESTFHDMSDPQELRDKLRRTAESLEEDLKRTEFKGR 391
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK---AELP-VSLRLIGLRVTQF 301
TL LK+K ++EV TR V K + +++++ ++ +L+ E P + LRL+GLR T
Sbjct: 392 TLCLKVKLHTYEVFTRQVQPPKAVFTADELYNYSLPMLQKLEKEYPGMKLRLMGLRCTHL 451
>gi|259485643|tpe|CBF82838.1| TPA: DNA-directed polymerase kappa, putative (AFU_orthologue;
AFUA_7G01270) [Aspergillus nidulans FGSC A4]
Length = 612
Score = 230 bits (586), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 119/298 (39%), Positives = 178/298 (59%), Gaps = 7/298 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG R+ M F+A+KLCP+LI +P ++ KYT + R + +YDP F +AS+DEAYL
Sbjct: 154 ARKFGCRSGMASFVAKKLCPQLICLPQNYEKYTAKAQEIRAILAQYDPQFESASIDEAYL 213
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
+IT CRE+ + E +R + E+ ++ SAG+A N +AK+CS+ NKPNGQF +PN
Sbjct: 214 NITAYCREKQLDPDEAVSRMRAEILEKTKISVSAGIAANAKIAKICSNRNKPNGQFRVPN 273
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
++ A+M F+ LP+RKI G+G+V E L D GI TC ++ + + L +F F
Sbjct: 274 EKNAIMEFMRDLPMRKINGVGRVFEREL-DSIGIKTCGDIFPQRAYLAKLFGEKALHFLA 332
Query: 188 SVGLGLGSTNTPQARF--RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
LG+G T A RKS+ +ERTF + KL A+ L D+ + GR
Sbjct: 333 QCYLGVGRTKIQPAESYERKSVGTERTFHEISKREEFREKLWSCAQELEKDLSRTQFMGR 392
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLRLIGLRVT 299
TL LK+K A+FEV TR + +S+++D+ A + L+ E+P + LRL+G+R T
Sbjct: 393 TLVLKVKLATFEVLTRQYQPARAVSTAKDLFTSALPMLEKLEKEIPNMKLRLLGIRCT 450
>gi|67525831|ref|XP_660977.1| hypothetical protein AN3373.2 [Aspergillus nidulans FGSC A4]
gi|40744161|gb|EAA63341.1| hypothetical protein AN3373.2 [Aspergillus nidulans FGSC A4]
Length = 609
Score = 229 bits (585), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 119/298 (39%), Positives = 178/298 (59%), Gaps = 7/298 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG R+ M F+A+KLCP+LI +P ++ KYT + R + +YDP F +AS+DEAYL
Sbjct: 151 ARKFGCRSGMASFVAKKLCPQLICLPQNYEKYTAKAQEIRAILAQYDPQFESASIDEAYL 210
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
+IT CRE+ + E +R + E+ ++ SAG+A N +AK+CS+ NKPNGQF +PN
Sbjct: 211 NITAYCREKQLDPDEAVSRMRAEILEKTKISVSAGIAANAKIAKICSNRNKPNGQFRVPN 270
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
++ A+M F+ LP+RKI G+G+V E L D GI TC ++ + + L +F F
Sbjct: 271 EKNAIMEFMRDLPMRKINGVGRVFEREL-DSIGIKTCGDIFPQRAYLAKLFGEKALHFLA 329
Query: 188 SVGLGLGSTNTPQARF--RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
LG+G T A RKS+ +ERTF + KL A+ L D+ + GR
Sbjct: 330 QCYLGVGRTKIQPAESYERKSVGTERTFHEISKREEFREKLWSCAQELEKDLSRTQFMGR 389
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLRLIGLRVT 299
TL LK+K A+FEV TR + +S+++D+ A + L+ E+P + LRL+G+R T
Sbjct: 390 TLVLKVKLATFEVLTRQYQPARAVSTAKDLFTSALPMLEKLEKEIPNMKLRLLGIRCT 447
>gi|403341934|gb|EJY70284.1| DNA polymerase IV / kappa [Oxytricha trifallax]
Length = 912
Score = 228 bits (581), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 116/300 (38%), Positives = 186/300 (62%), Gaps = 9/300 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR+AMPGFIA+KLCP+L+ V +F KY S + + + +YDP+F + DEA L
Sbjct: 372 ARKFGVRSAMPGFIAKKLCPDLVLVECNFKKYKEVSKVFQAILYEYDPHFESMGSDEANL 431
Query: 68 DITEVCRERGISG----IEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF 123
D+T ++ +++AEE+RT ++E LTCSAG++ N++LAK+C+D+NKPNGQF
Sbjct: 432 DLTNYLITHNLNDEDNKLKVAEEIRTKIFEATQLTCSAGISCNKMLAKICTDMNKPNGQF 491
Query: 124 VLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTA 183
L D+ ++ F+ L +RKI GIG++TE +L+ + GI TC++++ K + +FS T+
Sbjct: 492 YLKPDKEVILDFMGKLKVRKIPGIGRMTELVLQSL-GIETCQQIIDKAPEIQIIFSEKTS 550
Query: 184 DFFLSVGLGLGST---NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKE 240
F + LG+ +KSIS TF K++EI E L+ M K
Sbjct: 551 YFLIRAALGIARNFHEEDDDDACQKSISVSTTFRPLYKLDQFKDKISEICEDLAQRMDKR 610
Query: 241 GLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV-SLRLIGLRVT 299
+ G T+TL+LK+ F +++TL +YI +SED+ + LL+ + P ++RLIG++++
Sbjct: 611 KIGGLTITLELKSTEFNNVNKSMTLNRYIWTSEDMRTYCHQLLEMQWPFPAVRLIGVKMS 670
>gi|327298651|ref|XP_003234019.1| DNA-directed polymerase kappa [Trichophyton rubrum CBS 118892]
gi|326464197|gb|EGD89650.1| DNA-directed polymerase kappa [Trichophyton rubrum CBS 118892]
Length = 604
Score = 228 bits (580), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 118/296 (39%), Positives = 175/296 (59%), Gaps = 7/296 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG R+ M F+A+KLCPELI +P ++ KYT + R + YDP F +AS+DEAYL
Sbjct: 159 ARKFGCRSGMASFVAKKLCPELICIPQNYEKYTAKAREIRAILANYDPEFESASVDEAYL 218
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
+IT+ C + ++LR V+ + G+T SAG+A N +AK+ S+ NKPNGQF +PN
Sbjct: 219 NITQYCAANNVDPQAAVQQLRGEVFAQTGVTVSAGIAANAKIAKISSNWNKPNGQFYVPN 278
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
+R A+M F++ +P+RK+ G+G+V E L G+ TC ++ Q +L +F F +
Sbjct: 279 ERAAIMEFMTKIPVRKVNGVGRVFEREL-GAIGVTTCGDIYQYRGMLSQLFGQKAFCFLM 337
Query: 188 SVGLGLGSTN-TPQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
LGLG T P F RKS+ +E TF+ D L KL A L D++ G +GR
Sbjct: 338 QCYLGLGRTRIQPAGTFPRKSVGTEHTFADLSDFHQLQEKLRWTASALEKDLRAAGTKGR 397
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL----KAELPVSLRLIGLR 297
TL LK+K +FEV +R K + ++D+ K++ LL K + +RL+GLR
Sbjct: 398 TLVLKVKLHTFEVLSRQTVAPKPLLLADDLYKYSLPLLTKLHKERPQMKIRLMGLR 453
>gi|405119670|gb|AFR94442.1| DNA-directed polymerase kappa [Cryptococcus neoformans var. grubii
H99]
Length = 632
Score = 228 bits (580), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 124/298 (41%), Positives = 174/298 (58%), Gaps = 3/298 (1%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR+AM GFIA+KLCP +I F YT S +++ +YD N M ASLDE YL
Sbjct: 161 ARKFGVRSAMAGFIAKKLCPHIILTDLHFDLYTKASKAVKEILVQYDENLMMASLDEGYL 220
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
+IT ++ E+ ++R V E+ LT SAG+A NR+LAK+CSD NKPNGQF L
Sbjct: 221 NITPYMSTHNMTAAEVVTQIRAQVEEKTSLTISAGIAANRMLAKICSDKNKPNGQFELAF 280
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
DR ++ F+ LP+RKI G G+VTE L + GI TC ++ +K L +
Sbjct: 281 DRATIVRFLRDLPVRKIPGFGRVTERCL-EGLGIQTCGDIYEKRMDLLLMDHWFGFRGLC 339
Query: 188 SVGLGLGSTNTPQARF--RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
LG+ R RKS+ ERTF D + L +I E L D+ + G+
Sbjct: 340 RAYLGIADNTVAPGRREERKSVGVERTFRDKMDDEEIMATLIDIVEELGKDLDRLQYAGK 399
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQFNE 303
T+T+K K ++E +TRA ++ KYISS+ DIL A LLK ELP+ +RL+G+R++ +
Sbjct: 400 TITIKYKLHTYENKTRAKSIPKYISSARDILPIAQELLKKELPLRIRLLGVRLSTLKD 457
>gi|403367013|gb|EJY83315.1| DNA polymerase IV / kappa [Oxytricha trifallax]
Length = 699
Score = 226 bits (577), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 116/302 (38%), Positives = 186/302 (61%), Gaps = 9/302 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR+AMPGFIA+KLCP+L+ V +F KY S + + + +YDP+F + DEA L
Sbjct: 159 ARKFGVRSAMPGFIAKKLCPDLVLVECNFKKYKEVSKVFQAILYEYDPHFESMGSDEANL 218
Query: 68 DITEVCRERGISG----IEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF 123
D+T ++ +++AEE+RT ++E LTCSAG++ N++LAK+C+D+NKPNGQF
Sbjct: 219 DLTNYLITHNLNDEDNKLKVAEEIRTKIFEATQLTCSAGISCNKMLAKICTDMNKPNGQF 278
Query: 124 VLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTA 183
L D+ ++ F+ L +RKI GIG++TE +L+ + GI TC++++ K + +FS T+
Sbjct: 279 YLKPDKEVILDFMGKLKVRKIPGIGRMTELVLQSL-GIETCQQIIDKAPEIQIIFSEKTS 337
Query: 184 DFFLSVGLGLGST---NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKE 240
F + LG+ +KSIS TF K++EI E L+ M K
Sbjct: 338 YFLIRAALGIARNFHEEDDDDACQKSISVSTTFRPLYKLDQFKDKISEICEDLAQRMDKR 397
Query: 241 GLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV-SLRLIGLRVT 299
+ G T+TL+LK+ F +++TL +YI +SED+ + LL+ + P ++RLIG++++
Sbjct: 398 KIGGLTITLELKSTEFNNVNKSMTLNRYIWTSEDMRTYCHQLLEMQWPFPAVRLIGVKMS 457
Query: 300 QF 301
Sbjct: 458 NL 459
>gi|50838893|gb|AAT81654.1| putative DNA-directed polymerase, having alternative splicing
products [Oryza sativa Japonica Group]
Length = 291
Score = 226 bits (575), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 100/137 (72%), Positives = 123/137 (89%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVRAAMPGFI KLCPEL+FV +F +YTYYS+LTRKVF +YDPNF+A SLDEAYL
Sbjct: 143 ARKFGVRAAMPGFIGCKLCPELVFVRPNFERYTYYSELTRKVFQRYDPNFVATSLDEAYL 202
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
+IT+VC +RGI+G E+A ELR ++++E GLTCSAGVAPNR++AKVCSDINKPNGQF+LPN
Sbjct: 203 NITKVCFDRGITGEEVATELRGAIHQETGLTCSAGVAPNRMIAKVCSDINKPNGQFILPN 262
Query: 128 DRMAVMTFISSLPIRKI 144
D+ AV TF+S+LPIRK+
Sbjct: 263 DQEAVTTFVSTLPIRKV 279
>gi|196001133|ref|XP_002110434.1| hypothetical protein TRIADDRAFT_22932 [Trichoplax adhaerens]
gi|190586385|gb|EDV26438.1| hypothetical protein TRIADDRAFT_22932 [Trichoplax adhaerens]
Length = 653
Score = 226 bits (575), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 132/376 (35%), Positives = 202/376 (53%), Gaps = 68/376 (18%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARR+GVRAAMPGFI ++LCP+L+FV + KY S R + +YDPNF + SLDEAY+
Sbjct: 128 ARRYGVRAAMPGFIGKRLCPDLVFVKPNSAKYAQASKEVRAILAEYDPNFASVSLDEAYM 187
Query: 68 DITEVCRERG--------------------------------ISGIE------------- 82
D+TE R + G++
Sbjct: 188 DLTEYLEGRKCTFPSSHVEFTVPQQDLTEDMLKILNEVAPPTVDGVDSYNNCSSNSSIRK 247
Query: 83 ---------IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVM 133
+ E+R + + LT SAG+ PN++LAK+CSD KPNGQF + R ++
Sbjct: 248 VSFGHTIEDVMREIRFKINRKTKLTASAGIGPNKMLAKICSDWKKPNGQFKVEFTRDKII 307
Query: 134 TFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGL 193
F+ LP RKI GIGKV+E +L ++ I+ C+E+ K L+ +FS+ + FFL+V +G+
Sbjct: 308 EFMRQLPTRKISGIGKVSERLLNEI-EISNCKELYDKRDLIYLLFSNVSTKFFLAVAMGI 366
Query: 194 GSTNTPQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLK 252
GS + RKSIS ERTF A + K ++ + L+ M+KE + GR LT+KLK
Sbjct: 367 GSNEVSSKNYQRKSISCERTFGEISRLADMLVKCQKLCDNLANHMKKENITGRCLTVKLK 426
Query: 253 TASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKV 306
T +FEV+ R+V+L+ + +S+ ++ AS ++++E + LRL+G++++
Sbjct: 427 TVAFEVKQRSVSLKHHTNSTTEMFNIASEVIRSERLACQPERLRLRLMGIKMSTLK---- 482
Query: 307 RAPSD--PTQKTLTNF 320
R SD Q TLT +
Sbjct: 483 RHESDEKSIQDTLTRY 498
>gi|384497743|gb|EIE88234.1| hypothetical protein RO3G_12945 [Rhizopus delemar RA 99-880]
Length = 524
Score = 225 bits (574), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 124/309 (40%), Positives = 179/309 (57%), Gaps = 34/309 (11%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++GVR+AMPGFIA KLCP+L +P F KY S+ R VF KYDPNFM SLDEAYL
Sbjct: 154 ARKYGVRSAMPGFIALKLCPQLKMIPLHFPKYIGASNKVRAVFAKYDPNFMPMSLDEAYL 213
Query: 68 DITEVCR-ERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP 126
++TE + E ++ E+ E++R ++E LT SA
Sbjct: 214 NLTEYLKKEPDLTPYELVEQIRREIFESTQLTASA------------------------- 248
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFF 186
DR +++ F+ L +R+I G+G+VTE +L + G++TC ++ K ++L + S F
Sbjct: 249 -DRTSIVNFVKDLKVRQIPGVGRVTERVL-ESLGVHTCGDIYPKRAILYKLLSPINFQFL 306
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRT 246
L +GLG+T RKS+ ERTF+ D A LY KL E+ E L D +K G+ GR
Sbjct: 307 LKCYMGLGTTMFNTESERKSVGVERTFTSLSDPAKLYEKLHELCEALEKDAEKAGVMGRN 366
Query: 247 LTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQF----- 301
+ +K+K SFEVR R+ TL Y+SS++DI K A LL E+P+ LRL+G+R+
Sbjct: 367 IGIKIKFVSFEVRIRSRTLPSYVSSAKDIEKVAKQLLANEMPMDLRLMGVRLANLKPRGS 426
Query: 302 -NEDKVRAP 309
+E ++AP
Sbjct: 427 NDESVLKAP 435
>gi|326472504|gb|EGD96513.1| DNA-directed polymerase kappa [Trichophyton tonsurans CBS 112818]
gi|326484790|gb|EGE08800.1| DNA-directed polymerase kappa [Trichophyton equinum CBS 127.97]
Length = 604
Score = 224 bits (572), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 118/296 (39%), Positives = 174/296 (58%), Gaps = 7/296 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG R+ M F+A+KLCPELI +P ++ KYT + R + YDP F +AS+DEAYL
Sbjct: 159 ARKFGCRSGMASFVAKKLCPELICIPQNYEKYTAKAREIRAILANYDPEFESASVDEAYL 218
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
+IT+ C + ++LR V+ + G+T SAG+A N +AK+ S+ NKPNGQF +PN
Sbjct: 219 NITQYCAANNVDPQAAVQQLRGEVFAQTGVTVSAGIAANAKIAKISSNWNKPNGQFYVPN 278
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
+R A+M F++ +P+RK+ G+G+V E L GI TC ++ Q +L +F F +
Sbjct: 279 ERAAIMEFMTKIPVRKVNGVGRVFEREL-GAIGITTCGDIYQYRGMLSQLFGQKAFCFLM 337
Query: 188 SVGLGLGSTN-TPQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
LGLG T P F RKS+ +E TF+ D L KL A L D++ +GR
Sbjct: 338 QCYLGLGRTRIQPAGTFPRKSVGTEHTFADLSDFDQLQEKLRWTASALEKDLRAAETKGR 397
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL----KAELPVSLRLIGLR 297
TL LK+K +FEV +R K + ++D+ K++ LL K + +RL+GLR
Sbjct: 398 TLVLKVKLHTFEVLSRQTVAPKPLLLADDLYKYSLPLLTKLHKERPQMKIRLMGLR 453
>gi|407922246|gb|EKG15350.1| DNA-repair protein UmuC-like protein [Macrophomina phaseolina MS6]
Length = 486
Score = 224 bits (571), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 123/291 (42%), Positives = 172/291 (59%), Gaps = 7/291 (2%)
Query: 17 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 76
M F+A KLCP+LI +P +F KYT + R V YDP F +AS+DEAYL+IT C +
Sbjct: 1 MASFVAMKLCPQLICLPLNFEKYTAKAREVRAVLEHYDPRFESASIDEAYLNITAYCEDH 60
Query: 77 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 136
+ ++ +++R V+E+ +T SAG+A N LAK+CS+ NKPNGQF L NDR +M F+
Sbjct: 61 HMDPEDVVQQMRREVHEKTNITVSAGIAANAKLAKICSNKNKPNGQFRLANDRATIMAFM 120
Query: 137 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 196
LP RKI GIG+V E L D G+ TC ++ + + L +F F + LGLG T
Sbjct: 121 RDLPTRKINGIGRVFEREL-DAIGVKTCGDIYEHRAYLPQLFGEKAFQFLMQCYLGLGRT 179
Query: 197 N-TPQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 254
P + RKS+ +E TF DK L KL AE L D+++ +GRTL LK+K
Sbjct: 180 KIQPAEEYERKSVGTESTFHDMSDKDDLRAKLWHTAEELEKDLERTQFKGRTLVLKVKLH 239
Query: 255 SFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLRLIGLRVTQF 301
++EV TR V I ED+ K++ + L+ E+P + LRL+GLRVT
Sbjct: 240 TYEVLTRQVAPPFAIHKKEDLYKYSLPILAKLEKEIPGLKLRLMGLRVTHL 290
>gi|299751501|ref|XP_002911648.1| DNA polymerase IV [Coprinopsis cinerea okayama7#130]
gi|197244665|dbj|BAG68959.1| DNA polymerase kappa [Coprinopsis cinerea]
gi|298409403|gb|EFI28154.1| DNA polymerase IV [Coprinopsis cinerea okayama7#130]
Length = 707
Score = 224 bits (571), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 122/291 (41%), Positives = 178/291 (61%), Gaps = 11/291 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++GVR+ M GFI +KLCP+LIFVP F Y+ S +F +YDP A +DEAYL
Sbjct: 145 ARKYGVRSGMAGFIGKKLCPQLIFVPAHFDLYSKTSAQIMSIFRRYDPTMCPAGVDEAYL 204
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
++T C++ G + E+ E+R +V++E LT SAG+APN++LAK+CSD NKPNGQF L
Sbjct: 205 NVTAYCKQHGKTVDEVVSEMRKAVFDETQLTVSAGIAPNKMLAKICSDKNKPNGQFKLEF 264
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
+ ++ F+ SL IRK+ G+G+V E +L D GI TC ++ Q+ ++ + DF L
Sbjct: 265 EPDSIKAFMHSLSIRKVPGVGRVNERLL-DSIGIRTCGDIYQQRGVIALMDKRFGLDFLL 323
Query: 188 SVGLGLGSTN-TPQAR-FRKSISSERTFSVTEDK--------ALLYRKLAEIAEMLSADM 237
V LG+ S + P AR RKSI +ERTFS + + KL E+AE L DM
Sbjct: 324 RVYLGIASNHVAPHAREERKSIGAERTFSTLDSNHADPKKGSVAIVAKLEEVAEELVEDM 383
Query: 238 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELP 288
++EG G+T+TLK K +++ TRA K+I++ E++ LL + P
Sbjct: 384 KREGWVGKTVTLKYKLDTYQTFTRAKQFSKWITTKEELFNTGKELLLSRFP 434
>gi|426197178|gb|EKV47105.1| hypothetical protein AGABI2DRAFT_69121 [Agaricus bisporus var.
bisporus H97]
Length = 425
Score = 223 bits (569), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 115/271 (42%), Positives = 161/271 (59%), Gaps = 12/271 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++GVR+ M GF+A+KLCP+LI +P FT Y SD +F +YDPN + A DE YL
Sbjct: 159 ARKYGVRSGMAGFVAKKLCPDLILIPEHFTTYMETSDQVMSIFKRYDPNMLIAGCDEGYL 218
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
+IT C E +S + +E+R V+EE LT SAG+APN+ NKPNGQF L
Sbjct: 219 NITLHCEEHSVSAADCVQEMRRIVFEETKLTVSAGIAPNK---------NKPNGQFQLIP 269
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
DR ++ F+ L +RK+ GIG+V E +L + GI TC ++ + + + + L
Sbjct: 270 DRKTILAFMRELSVRKVFGIGRVNERLLESI-GIKTCGDIFTHRATIALMDKQFGLHYLL 328
Query: 188 SVGLGLGSTNT--PQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
LG+ S PQ RKSI SERTFS +D +L +KL IA L DM + G G+
Sbjct: 329 KTYLGISSNEVRPPQREERKSIGSERTFSPLDDGEVLLQKLEHIASELETDMARNGWAGK 388
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDIL 276
T+TLK K +++V TRA +L +Y+SS ED+
Sbjct: 389 TITLKYKLDTYQVFTRAKSLDRYVSSKEDLF 419
>gi|154322288|ref|XP_001560459.1| hypothetical protein BC1G_01291 [Botryotinia fuckeliana B05.10]
Length = 624
Score = 223 bits (569), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 124/300 (41%), Positives = 176/300 (58%), Gaps = 20/300 (6%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFGVR+AM GFIA+KLCP+LI VP +F KYT + R++ YDP F +AS+DEAYL
Sbjct: 145 ARRFGVRSAMAGFIAKKLCPQLIQVPLNFDKYTAKAQEVREILVDYDPRFESASIDEAYL 204
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
+ITE C++ I E+LR V+E+ AK+CS+ NKPNGQ+ + N
Sbjct: 205 NITEYCQKNDIDPEAAVEQLRREVHEKTK-------------AKICSNYNKPNGQYRVAN 251
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
+R+ +M F+ LP RK+ GIG+V E L G+ TC ++ L +F F +
Sbjct: 252 NRVEIMKFMRDLPTRKVNGIGRVFEREL-GAIGVKTCGDIYNVRHYLPKLFGEKAFIFLM 310
Query: 188 SVGLGLGSTNTPQAR--FRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
LGLG T+ A RKS+ +E TF+ D L KL AE L D+Q+ +GR
Sbjct: 311 QCYLGLGRTDVKPAEEYTRKSVGTEGTFNDINDATELRSKLRHTAEELEKDLQRTQFKGR 370
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLRLIGLRVTQF 301
TL LK+K ++EV TR K + S++D+ K++ + L+AE+P ++LRL+GLR T
Sbjct: 371 TLVLKVKLKTYEVLTRQAAPPKAVFSADDLYKYSLPMLEKLEAEMPGLTLRLMGLRCTNL 430
>gi|315041825|ref|XP_003170289.1| DNA polymerase kappa [Arthroderma gypseum CBS 118893]
gi|311345323|gb|EFR04526.1| DNA polymerase kappa [Arthroderma gypseum CBS 118893]
Length = 604
Score = 223 bits (569), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 123/327 (37%), Positives = 184/327 (56%), Gaps = 16/327 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG R+ M F+A+KLCPELI +P ++ KYT + R + YDP F +AS+DEAYL
Sbjct: 159 ARKFGCRSGMASFVAKKLCPELICIPQNYEKYTAKAREIRAILANYDPEFESASVDEAYL 218
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
+IT+ C + + ++LR V+ + G+T SAG+A N +AK+ S+ NKPNGQF +P+
Sbjct: 219 NITQYCAANNVDPQDAVQQLRDEVFAQTGVTVSAGIAANAKIAKITSNWNKPNGQFHVPS 278
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
+R A+M F++ +P+RK+ G+G+V E L GI TC ++ Q +L +F F +
Sbjct: 279 ERAAIMDFMTKIPVRKVNGVGRVFEREL-GAIGITTCGDIYQFRGMLSQLFGQKAFCFLM 337
Query: 188 SVGLGLGSTN-TPQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
LGLG T P F RKS+ +E TF+ D L KL A L D++ +GR
Sbjct: 338 QCYLGLGRTQIQPAGTFPRKSVGTEHTFADLGDFHQLQEKLKWTASALEKDLRAAETKGR 397
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL----KAELPVSLRLIGLRVTQF 301
TL LK+K +FE+ +R K + ++D+ K++ LL K + +RL+GLR T
Sbjct: 398 TLVLKVKLHTFELLSRQTVAPKPLLLADDLYKYSLPLLTKLYKERPQMKIRLMGLRCTSL 457
Query: 302 NEDKVRAPSDPTQKTLTNFMTSGHASK 328
T+K NF G A +
Sbjct: 458 VS---------TKKGTFNFFNRGDAGQ 475
>gi|302507978|ref|XP_003015950.1| hypothetical protein ARB_06262 [Arthroderma benhamiae CBS 112371]
gi|291179518|gb|EFE35305.1| hypothetical protein ARB_06262 [Arthroderma benhamiae CBS 112371]
Length = 605
Score = 223 bits (568), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 118/296 (39%), Positives = 174/296 (58%), Gaps = 7/296 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG R+ M F+A+KLCPELI +P ++ KYT + R + YDP F +AS+DEAYL
Sbjct: 159 ARKFGCRSGMASFVAKKLCPELICIPQNYEKYTAKAREIRAILANYDPEFESASVDEAYL 218
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
+IT+ C + ++LR V+ + G+T SAG+A N +AK+ S+ NKPNGQF +P+
Sbjct: 219 NITQYCAANNVDPQAAVQQLRGEVFAQTGVTVSAGIAANAKIAKISSNWNKPNGQFYVPS 278
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
+R A+M F++ +P+RK+ G+G+V E L GI TC ++ Q +L +F F +
Sbjct: 279 ERAAIMEFMTKIPVRKVNGVGRVFEREL-GAIGITTCGDIYQYRGMLSQLFGQKAFCFLM 337
Query: 188 SVGLGLGSTN-TPQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
LGLG T P F RKSI +E TF+ D L KL A L D++ +GR
Sbjct: 338 QCYLGLGRTRIQPAGTFPRKSIGTEHTFADLSDFHELQEKLRWTASALEKDLRAAETKGR 397
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL----KAELPVSLRLIGLR 297
TL LK+K +FEV +R K + ++D+ K++ LL K + +RL+GLR
Sbjct: 398 TLVLKVKLHTFEVLSRQTVAPKPLLVADDLYKYSLPLLTKLHKERPQMKIRLMGLR 453
>gi|302666871|ref|XP_003025031.1| hypothetical protein TRV_00836 [Trichophyton verrucosum HKI 0517]
gi|291189111|gb|EFE44420.1| hypothetical protein TRV_00836 [Trichophyton verrucosum HKI 0517]
Length = 605
Score = 223 bits (568), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 118/296 (39%), Positives = 174/296 (58%), Gaps = 7/296 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG R+ M F+A+KLCPELI +P ++ KYT + R + YDP F +AS+DEAYL
Sbjct: 159 ARKFGCRSGMASFVAKKLCPELICIPQNYEKYTAKAREIRAILANYDPEFESASVDEAYL 218
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
+IT+ C + ++LR V+ + G+T SAG+A N +AK+ S+ NKPNGQF +P+
Sbjct: 219 NITQYCAANNVDPQAAVQQLRGEVFAQTGVTVSAGIAANAKIAKISSNWNKPNGQFYVPS 278
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
+R A+M F++ +P+RK+ G+G+V E L GI TC ++ Q +L +F F +
Sbjct: 279 ERAAIMEFMTKIPVRKVNGVGRVFEREL-GAIGITTCGDIYQYRGMLSQLFGQKAFCFLM 337
Query: 188 SVGLGLGSTN-TPQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
LGLG T P F RKSI +E TF+ D L KL A L D++ +GR
Sbjct: 338 QCYLGLGRTRIQPAGTFPRKSIGTEHTFADLSDFHELQEKLRWTASALEKDLRAAETKGR 397
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL----KAELPVSLRLIGLR 297
TL LK+K +FEV +R K + ++D+ K++ LL K + +RL+GLR
Sbjct: 398 TLVLKVKLHTFEVLSRQTVAPKPLLVADDLYKYSLPLLTKLHKERPQMKIRLMGLR 453
>gi|402224218|gb|EJU04281.1| DNA/RNA polymerase [Dacryopinax sp. DJM-731 SS1]
Length = 582
Score = 223 bits (567), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 124/298 (41%), Positives = 174/298 (58%), Gaps = 14/298 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+ GVR+AMP IA+KL PELI VP F++Y+ S + +YDP A DEAYL
Sbjct: 140 ARKCGVRSAMPMHIAKKLYPELIIVPCRFSRYSEVSKSLMSILRRYDPTMNPAGFDEAYL 199
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
+IT+ C E + E + +R V++E GLT SAG+AP NKP+GQF+LP
Sbjct: 200 NITQYCSEHELGAEECVQVIRDEVHKETGLTISAGIAP-----------NKPSGQFMLPF 248
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
DR ++ F+ L +RK+ GIG+V E IL + G+ TC ++ + +++ + L
Sbjct: 249 DRKGIVAFMKDLSVRKVPGIGRVNERIL-EAIGVKTCGDIYTQRAVITLLDHELGLHGLL 307
Query: 188 SVGLGLGSTNT-PQAR-FRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
LG+GS P R RKS+ ERTF D + L L IAE L D ++ G G+
Sbjct: 308 HAHLGIGSNVVEPHIREERKSVGVERTFRAVGDSSKLMEILENIAESLEEDCEQTGWAGK 367
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQFNE 303
TLTLK K ++EV TRA +L +YI S EDI S LL+ ELP+++RL+GLR+T +
Sbjct: 368 TLTLKYKLHTYEVFTRARSLNRYIRSKEDIFSIGSELLRKELPLTVRLLGLRLTHLKD 425
>gi|242206923|ref|XP_002469316.1| predicted protein [Postia placenta Mad-698-R]
gi|220731571|gb|EED85414.1| predicted protein [Postia placenta Mad-698-R]
Length = 527
Score = 222 bits (566), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 125/325 (38%), Positives = 186/325 (57%), Gaps = 15/325 (4%)
Query: 3 FELLSARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASL 62
F AR++GVR+ MP FIA+KLCP+LI V F +Y S +F +YDP+ AA
Sbjct: 117 FASYEARKYGVRSGMPSFIAKKLCPDLILVENHFHRYMELSKKVMNIFRRYDPSMCAAGC 176
Query: 63 DEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQ 122
DE YL+IT CR++ ++ E ++R +VY+E LT SAG+APN+ NKPNGQ
Sbjct: 177 DEGYLNITAYCRDQQLTADECVRQMRETVYQETKLTVSAGIAPNK---------NKPNGQ 227
Query: 123 FVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHST 182
F L + A+ F+ +L IRKI G+G+V E +L D GI TC ++ ++ +
Sbjct: 228 FTLDFEPRAIKAFMRNLSIRKIPGVGRVNERLL-DSIGIKTCGDIYTHRVVVSLMDKEFG 286
Query: 183 ADFFLSVGLGLGS--TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKE 240
F L LG+ S Q RKSI +ERTF ++ + KL E+A L +DM
Sbjct: 287 LQFLLQTYLGIASNVVQPGQREERKSIGAERTFHPLGNQDAILCKLEEVAAELESDMTSG 346
Query: 241 GLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQ 300
G G+T+TLK K +++V TRA + +++S+ ++ L +A LL E+P++LRLIGLRVT+
Sbjct: 347 GWTGKTVTLKFKLDTYQVFTRAKSFDRWVSTKKEDL-YAVKLLMPEMPLTLRLIGLRVTK 405
Query: 301 FNEDKVRAPSDPTQKTLTNFMTSGH 325
+ +R S+ + F S +
Sbjct: 406 LKD--LRVESEKKASGIKRFFQSAN 428
>gi|115402397|ref|XP_001217275.1| hypothetical protein ATEG_08689 [Aspergillus terreus NIH2624]
gi|114189121|gb|EAU30821.1| hypothetical protein ATEG_08689 [Aspergillus terreus NIH2624]
Length = 540
Score = 221 bits (564), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 131/337 (38%), Positives = 191/337 (56%), Gaps = 16/337 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR+ M F+A+KLCP+LI +P ++ KYT + R +F +YDP F +AS+DEAYL
Sbjct: 91 ARKFGVRSGMASFVAKKLCPQLILLPQNYDKYTAKAQEIRAIFTQYDPLFESASIDEAYL 150
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
+IT C E + E+ +R V E+ ++ SAG+A N +AK+ S+ NKPNGQF +PN
Sbjct: 151 NITAYCLENNLGPEEVVSRMRAEVLEKTQISVSAGIAANAKIAKIASNRNKPNGQFCVPN 210
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
DR A+M F+ LP+RK+ G+G+V E L D G+ TC ++ +LL +F F
Sbjct: 211 DRDAIMEFMRELPVRKVNGVGRVFEREL-DAIGVKTCGDIYPARALLAKLFGEKAFQFLA 269
Query: 188 SVGLGLGSTNT-PQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
LGLG T P + RKS+ +E TFS K KL +A+ L D+ + +GR
Sbjct: 270 QCYLGLGRTKIQPVENYERKSVGTETTFSEIGTKEEFRAKLLWVAQELEKDLARTQFKGR 329
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLRLIGLRVTQF 301
TL LK+K A+FEV TR + +S ++D+ A + L+ E+P + LRL+GLR T
Sbjct: 330 TLVLKVKLATFEVLTRQYQPPRAVSVAKDLYAFALPMLEKLEKEIPNMKLRLLGLRCTHL 389
Query: 302 NEDKVRAPSDPTQKTLTNFMTSGHASKKIVGDQNSLG 338
T+K +F + K G +S G
Sbjct: 390 VS---------TKKAGIDFFGWARSGKPSTGSADSSG 417
>gi|324505143|gb|ADY42216.1| DNA polymerase kappa [Ascaris suum]
Length = 641
Score = 221 bits (564), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 145/383 (37%), Positives = 207/383 (54%), Gaps = 73/383 (19%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARR+GVRAAMPGFI RKLCPEL VP DF KY S RKVF +YD NF SLDEAYL
Sbjct: 125 ARRYGVRAAMPGFIGRKLCPELKIVPCDFHKYRAASHEVRKVFEEYDSNFQMGSLDEAYL 184
Query: 68 DITE--------------------VCR--------------------------ERGIS-- 79
DI+E +CR + IS
Sbjct: 185 DISEYALTRLEPVERARIRYTGDCICRLPLLTEDEKEEMKNAKVSEELCGKCGKMRISVC 244
Query: 80 -----GIEIAE---ELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMA 131
G +I E ELR V + GLTCSAG+APN ++AK+CSDINKPNGQF + N + A
Sbjct: 245 DMVCFGTDIEEIVRELRFRVEQATGLTCSAGIAPNSMIAKICSDINKPNGQFRIANSKEA 304
Query: 132 VMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGL 191
V+ F+ LPIRK+ GIG VTE IL+ + + C ++ +K +++ +F+ + + FL + L
Sbjct: 305 VLKFMRDLPIRKVSGIGAVTEAILKGI-EVEKCGDLYEKRAIISLLFTRCSYEHFLRIAL 363
Query: 192 GLGSTNTP-----QARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLR-GR 245
G+ ++ T + RKSIS ERTF T D +LL + L + K +R G
Sbjct: 364 GISTSYTSFVTSEKESRRKSISVERTFHPTGDISLLIEITESLCNELIESLSKRLIRGGY 423
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL---PVSLRLIGLRVTQ-- 300
+ T+K+K ++F+V TR V++ I ++ +++ EL LRL+G+R+++
Sbjct: 424 SATVKMKFSTFDVITRCVSVDYVICDISHLMPLCERIIRNELREGNKQLRLLGVRLSRLL 483
Query: 301 FNEDKVRAPSDPTQKTLTNFMTS 323
F +DKV + K+LT+F ++
Sbjct: 484 FIDDKVE-----SMKSLTSFWSN 501
>gi|341895662|gb|EGT51597.1| CBN-POLK-1 protein [Caenorhabditis brenneri]
Length = 589
Score = 221 bits (564), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 146/390 (37%), Positives = 206/390 (52%), Gaps = 73/390 (18%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYT------------------------YYS 43
ARRFGVRA MPGFI++KLCPEL VP ++ KYT Y
Sbjct: 125 ARRFGVRAGMPGFISKKLCPELTLVPGNYPKYTKVSRQFSEIFMEYDGDVGMMSLDEAYI 184
Query: 44 DLT--------RKVFCKYD-----PNFMAASLDE---------------------AYLDI 69
DLT +++F ++ P ++ ++ AY D
Sbjct: 185 DLTEYVANRTEKRIFTRHRYGGDCPCWLPRVPEDEDIENLQFEDSECTKCSKNRRAYFDD 244
Query: 70 TEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDR 129
E G+ E+ E+R V + GLTCSAG+A N +LAK+CSD NKPNGQFVL NDR
Sbjct: 245 VEF----GVGREEVVREMRFRVEQLTGLTCSAGIAANFMLAKICSDFNKPNGQFVLENDR 300
Query: 130 MAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSV 189
++ F+ LPIRK+GGIG+V+E L+ + I T +ML + +L FS + FL
Sbjct: 301 NVILEFLEKLPIRKVGGIGRVSEAHLQSM-DIRTVGDMLLQKALFPLCFSPLAQESFLRT 359
Query: 190 GLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEG-LRGRTLT 248
LGL + RKSIS ERTFS T D +L EI +ML D++K G + G+T+T
Sbjct: 360 ALGLPGRPSSSDPRRKSISVERTFSPTSDFQMLCDVHLEICQMLEEDIRKAGVIGGKTIT 419
Query: 249 LKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQ--FNEDKV 306
LKLK +SF+V TR++T +SS EDI K++ LL+ E +RL+G+R++Q F E+K
Sbjct: 420 LKLKLSSFDVLTRSLTPSDTVSSLEDIQKYSLELLEKEKGKEIRLLGVRLSQLVFEEEK- 478
Query: 307 RAPSDPTQKTLTNFMTSGHASKKIVGDQNS 336
KT+T+F K + +++
Sbjct: 479 ------KSKTITDFWNDAKQQKPLSSPEDA 502
>gi|452818943|gb|EME26075.1| DNA polymerase kappa subunit [Galdieria sulphuraria]
Length = 537
Score = 221 bits (562), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 113/290 (38%), Positives = 180/290 (62%), Gaps = 2/290 (0%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++GVR+AMPGFIA KLCP+L+ VP F +Y S+ + K+D S+DEAY+
Sbjct: 133 ARKYGVRSAMPGFIALKLCPQLVIVPPRFKRYCQVSNQIASLLYKFDSR-AHMSMDEAYI 191
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
DITE + +G ++ ++R +++E G+TCSAGVA N ++AK+ +D+NKPNGQ ++
Sbjct: 192 DITEYLKTQGGVVEDVVSKIRQNIFENTGITCSAGVASNTMIAKIATDLNKPNGQTIVQP 251
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
D + + F++ L +RKI G+G+VTE +L + I ++++ S+L T +F L
Sbjct: 252 DMVCIQNFLNPLSVRKIPGVGRVTEKLLSSL-NIFCIQDIISHRSVLFHCMRRKTFEFLL 310
Query: 188 SVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTL 247
LG+ ++ RK +S ERTF T L + ++++L+ D++ E + +TL
Sbjct: 311 QSALGIAPAFICESESRKGMSRERTFKPTSSLEELRKICESVSKLLADDLEAEDMYAKTL 370
Query: 248 TLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLR 297
TLK+K + F VRTRAVT +I E IL++A LL E+P+ +RL+G+R
Sbjct: 371 TLKIKCSDFSVRTRAVTKCFFIYRYEQILENAWKLLLKEMPIEIRLLGVR 420
>gi|425773335|gb|EKV11693.1| DNA-directed polymerase kappa, putative [Penicillium digitatum Pd1]
Length = 621
Score = 220 bits (561), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 121/320 (37%), Positives = 182/320 (56%), Gaps = 16/320 (5%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR+ M F+A+KLCP+L+ +P ++ KYT + R + +YDP F +AS+DEAYL
Sbjct: 159 ARKFGVRSGMASFVAKKLCPQLVLLPPNYDKYTTKAKEIRAIIAEYDPLFESASIDEAYL 218
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
+IT C E E+ + LR + E ++ SAG+ N +AK+ S++NKPNGQF +PN
Sbjct: 219 NITAYCDENHREPDEVVQRLRAEILETTEVSVSAGIGANAKIAKIASNLNKPNGQFQVPN 278
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
+R A+M F+ LP+RK+ GIG+ E L+ + GI C ++ + L +F F
Sbjct: 279 EREAIMDFMCDLPVRKVNGIGRAFERELKSI-GIEKCGDIFHHRAFLTKLFGEKAFQFLA 337
Query: 188 SVGLGLGSTNTP--QARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
LGLG T + + RKS+S+E TF DK L KL A+ L+ D+ + +GR
Sbjct: 338 QCYLGLGRTKIEPVETQVRKSVSTETTFHDIGDKEELRAKLWWAAQELAKDLARTQFKGR 397
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLRLIGLRVTQF 301
TL LK+K +FEV TR + +S ++D+ A + L+ ++P + LRL+GLR +
Sbjct: 398 TLALKVKLHTFEVLTRQTAPSRAVSLAKDLYSFALPMLAKLEKDIPNLKLRLLGLRCSNL 457
Query: 302 NEDKVRAPSDPTQKTLTNFM 321
TQK NF
Sbjct: 458 VS---------TQKVGINFF 468
>gi|425778909|gb|EKV17010.1| DNA-directed polymerase kappa, putative [Penicillium digitatum
PHI26]
Length = 621
Score = 220 bits (561), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 121/320 (37%), Positives = 182/320 (56%), Gaps = 16/320 (5%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR+ M F+A+KLCP+L+ +P ++ KYT + R + +YDP F +AS+DEAYL
Sbjct: 159 ARKFGVRSGMASFVAKKLCPQLVLLPPNYDKYTTKAKEIRAIIAEYDPLFESASIDEAYL 218
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
+IT C E E+ + LR + E ++ SAG+ N +AK+ S++NKPNGQF +PN
Sbjct: 219 NITAYCDENHREPDEVVQRLRAEILETTEVSVSAGIGANAKIAKIASNLNKPNGQFQVPN 278
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
+R A+M F+ LP+RK+ GIG+ E L+ + GI C ++ + L +F F
Sbjct: 279 EREAIMDFMCDLPVRKVNGIGRAFERELKSI-GIEKCGDIFHHRAFLTKLFGEKAFQFLA 337
Query: 188 SVGLGLGSTNTP--QARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
LGLG T + + RKS+S+E TF DK L KL A+ L+ D+ + +GR
Sbjct: 338 QCYLGLGRTKIEPVETQVRKSVSTETTFHDIGDKEELRAKLWWAAQELAKDLARTQFKGR 397
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLRLIGLRVTQF 301
TL LK+K +FEV TR + +S ++D+ A + L+ ++P + LRL+GLR +
Sbjct: 398 TLALKVKLHTFEVLTRQTAPSRAVSLAKDLYSFALPMLAKLEKDIPNLKLRLLGLRCSNL 457
Query: 302 NEDKVRAPSDPTQKTLTNFM 321
TQK NF
Sbjct: 458 VS---------TQKVGINFF 468
>gi|409044729|gb|EKM54210.1| hypothetical protein PHACADRAFT_145933 [Phanerochaete carnosa
HHB-10118-sp]
Length = 589
Score = 220 bits (560), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 130/305 (42%), Positives = 181/305 (59%), Gaps = 4/305 (1%)
Query: 7 SARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAY 66
+AR+ GVR+ M F+ARKLCP+L+ VP F++Y S +F +YDP AA DE Y
Sbjct: 143 AARKHGVRSGMAEFVARKLCPQLVVVPCHFSRYMELSRQVMDIFRRYDPTMCAAGCDEGY 202
Query: 67 LDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP 126
L+IT C E +S + +R +V+ E LT SAG+APN++LAK+CSD NKPNGQF L
Sbjct: 203 LNITPYCEEYMLSADDCVRGMRETVFRETKLTVSAGIAPNKVLAKICSDRNKPNGQFALD 262
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFF 186
AV F+ L IRKI G+G+V E +L D GI TC ++ + L + + F
Sbjct: 263 FTPAAVKAFMHDLSIRKIPGVGRVNERLL-DSVGIQTCGDIYTHRATLALMDKYFGLHFL 321
Query: 187 LSVGLGLGS--TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRG 244
L LG+ S Q RKSI +ERTF K + RKL E+A L+ D+++ G G
Sbjct: 322 LQTYLGIASNVVQPGQREERKSIGAERTFHTISSKEDILRKLEEVAAELNEDLERTGWTG 381
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISS-SEDILKHASVLLKAELPVSLRLIGLRVTQFNE 303
+T+TLK K +++V TRA + ++IS+ ED+ LL ELP+ LRLIGLRV + +
Sbjct: 382 KTVTLKYKLDTYQVFTRAKSFDRWISTKKEDLFATGKELLLPELPLRLRLIGLRVMKLKD 441
Query: 304 DKVRA 308
+V A
Sbjct: 442 LRVDA 446
>gi|156378469|ref|XP_001631165.1| predicted protein [Nematostella vectensis]
gi|156218200|gb|EDO39102.1| predicted protein [Nematostella vectensis]
Length = 483
Score = 219 bits (559), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 133/361 (36%), Positives = 198/361 (54%), Gaps = 72/361 (19%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKY------------------------TYYS 43
ARR+GVRAAMPGFIA+KLCP LI VP F KY Y
Sbjct: 126 ARRYGVRAAMPGFIAKKLCPHLIIVPLHFDKYRAVSKIVRGIFREYDPRFVPMSLDEAYL 185
Query: 44 DLT----------------RKVFCKYDPNFMAASLDEAYLDITEVCR------------- 74
DLT +KV+ + P+ S E+ +E C
Sbjct: 186 DLTDYLIERQRKTEKRLFYKKVYRQTSPSAGVPSESES----SEACGSNTAQESENVPSV 241
Query: 75 --------ERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP 126
E G ++ +E+R + E LT SAG+A N LLAKVC+D NKPNGQF L
Sbjct: 242 AESVGEPIEFGNDVKDVVQEIRFRIENETQLTASAGIACNVLLAKVCTDCNKPNGQFYLK 301
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFF 186
DR +++F+ +LPIRKI GIG+V+E +L+ G+ TC ++ +K LL + S ++ F
Sbjct: 302 PDREEIVSFVKTLPIRKISGIGRVSEQMLK-ALGVITCADLFEKRDLLVLLHSDISSRFL 360
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRT 246
+ V LGLG+T R RKS+ +ERTFS + A L+ + ++ + ++ DM +EGLR +T
Sbjct: 361 IEVALGLGATRLETDRGRKSLGTERTFSEISNPAQLFSECEQLCKAIAVDMNEEGLRPKT 420
Query: 247 LTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQ 300
+T+KLKT +FE++TR+V+ ++ I+S ++++ A LL E+ P+ LRL+G+R++
Sbjct: 421 VTIKLKTINFELKTRSVSFRQGITSEKELIASAFDLLGKEIKACEPKPLKLRLMGVRLSN 480
Query: 301 F 301
F
Sbjct: 481 F 481
>gi|296194317|ref|XP_002744900.1| PREDICTED: DNA polymerase kappa [Callithrix jacchus]
Length = 861
Score = 219 bits (557), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 118/263 (44%), Positives = 171/263 (65%), Gaps = 12/263 (4%)
Query: 77 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 135
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 281 GTSAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 339
Query: 136 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 195
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 340 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGS 398
Query: 196 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 255
T+ + RKS+S ERTFS Y E+ L+ D+QKEGL+GRT+T+KLK +
Sbjct: 399 THLTRDGERKSMSVERTFSEINKAEEQYSLCQELCSELAQDLQKEGLKGRTVTIKLKNVN 458
Query: 256 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVRAP 309
FEV+TRA T+ +S++E+I A LLK E+ P+ LRL+G+R++ F ++ R
Sbjct: 459 FEVKTRASTVSSVVSTAEEIFAIAKELLKTEIDADFPHPLRLRLMGVRISSFPSEEDRKH 518
Query: 310 SDPTQKTLTNFMTSGHASKKIVG 332
Q+++ F+ +G+ + + G
Sbjct: 519 Q---QRSIIGFLQAGNQTPSVNG 538
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 44/69 (63%), Positives = 53/69 (76%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFGVRAAMPGFIA++LCP+LI VP +F KY S +++ YDPNFMA SLDEAYL
Sbjct: 143 ARRFGVRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYL 202
Query: 68 DITEVCRER 76
+IT+ ER
Sbjct: 203 NITKHLEER 211
>gi|358375860|dbj|GAA92435.1| DNA-directed polymerase kappa [Aspergillus kawachii IFO 4308]
Length = 602
Score = 219 bits (557), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 120/300 (40%), Positives = 183/300 (61%), Gaps = 7/300 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG R+ M F+A+KLCP+LI +P ++ KYT + R +F +YDP F +AS+DEAYL
Sbjct: 155 ARKFGCRSGMASFVAKKLCPQLICLPQNYEKYTEKAKEIRAIFAQYDPTFESASIDEAYL 214
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
++T C E + E + +R V E+ ++ SAG+A N +AK+ S+ NKPNGQF +PN
Sbjct: 215 NLTAYCTENELDPEEAVQRMRAEVLEKTKISVSAGIAANAKIAKIASNKNKPNGQFCVPN 274
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
+R A+M F+ LP+RK+ G+G+V E L D GI TC ++ + ++L +F F +
Sbjct: 275 EREAIMRFMEELPVRKVNGVGRVFEREL-DAIGIKTCGDIYPQRAILTKLFGEKAFHFLM 333
Query: 188 SVGLGLGSTN-TPQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
LGLG T P + RKS+ +ERTF +K KL IAE L D+ + +GR
Sbjct: 334 QCYLGLGRTKIQPVENYERKSVGTERTFHEIGNKEEFRAKLWSIAEELEKDLARTEFKGR 393
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLRLIGLRVTQF 301
TL LK+K A+FEV +R + +S+++D+ + + L+ E+P + +RL+GLR T
Sbjct: 394 TLVLKVKLATFEVLSRQCQPPRAVSTAKDLYAFSLPMLEKLEKEMPDLKMRLLGLRCTNL 453
>gi|145246060|ref|XP_001395279.1| DNA-directed polymerase kappa [Aspergillus niger CBS 513.88]
gi|134079991|emb|CAK48475.1| unnamed protein product [Aspergillus niger]
Length = 604
Score = 219 bits (557), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 120/300 (40%), Positives = 183/300 (61%), Gaps = 7/300 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG R+ M F+A+KLCP+LI +P ++ KYT + R +F +YDP F +AS+DEAYL
Sbjct: 155 ARKFGCRSGMASFVAKKLCPQLICLPQNYEKYTAKAKEIRAIFAQYDPTFESASIDEAYL 214
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
++T C E + E + +R V E+ ++ SAG+A N +AK+ S+ NKPNGQF +PN
Sbjct: 215 NLTAYCTENELDPEEAVQRMRAEVLEKTKISVSAGIAANAKIAKIASNKNKPNGQFCVPN 274
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
+R A+M F+ LP+RK+ G+G+V E L D GI TC ++ + ++L +F F +
Sbjct: 275 EREAIMKFMEELPVRKVNGVGRVFEREL-DAIGIKTCGDIYPQRAILTKLFGEKAFHFLV 333
Query: 188 SVGLGLGSTN-TPQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
LGLG T P + RKS+ +ERTF +K KL IAE L D+ + +GR
Sbjct: 334 QCYLGLGRTKIQPVENYERKSVGTERTFHEIGNKEEFRAKLWSIAEELEKDLARTEFKGR 393
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLRLIGLRVTQF 301
TL LK+K A+FEV +R + +S+++D+ + + L+ E+P + +RL+GLR T
Sbjct: 394 TLVLKVKLATFEVLSRQCQPPRAVSTAKDLYAFSLPMLEKLEKEMPDLKMRLLGLRCTNL 453
>gi|340505987|gb|EGR32239.1| hypothetical protein IMG5_090780 [Ichthyophthirius multifiliis]
Length = 490
Score = 219 bits (557), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 104/254 (40%), Positives = 161/254 (63%), Gaps = 5/254 (1%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++GVR+AMPGFIA+KLCP+LI +P D KY YS + + + +YDPN LDEA L
Sbjct: 159 ARKYGVRSAMPGFIAKKLCPQLILIPCDQEKYQKYSKIFKNILIQYDPNMEGMGLDEANL 218
Query: 68 DITEVCRERGISGIE----IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF 123
D+T+ + I E + ++R + +E GLTCS G+A N++LAK+CSD NKPNGQF
Sbjct: 219 DLTDYLKNNNIEKDEDIYDLCYQIRQKINKETGLTCSCGIAANKMLAKICSDQNKPNGQF 278
Query: 124 VLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTA 183
L N+ + FI +L IRKI GIG VTE IL+ + GI C+++L+K + + FS +T
Sbjct: 279 QLKNNAQEIKDFIGNLQIRKIPGIGNVTEQILKGI-GIEKCQDLLKKTADVKISFSENTY 337
Query: 184 DFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLR 243
++ + LG+G + + ++SIS RTF+ + + + K+ +A+ L+ D+ E +
Sbjct: 338 EYLIFSALGIGRNEHTEEKEKQSISVSRTFTRIQGEEEIKEKICLLAQYLAEDVLYENVW 397
Query: 244 GRTLTLKLKTASFE 257
G+ +++ +K A FE
Sbjct: 398 GKNISVTVKNAKFE 411
>gi|391341271|ref|XP_003744954.1| PREDICTED: DNA polymerase kappa-like [Metaseiulus occidentalis]
Length = 601
Score = 218 bits (556), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 133/352 (37%), Positives = 202/352 (57%), Gaps = 25/352 (7%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFGVRA +PGFIA KLCP+L+ V D KY+ S +V +YDPN + LDEA L
Sbjct: 122 ARRFGVRAGLPGFIALKLCPQLVLVRPDMGKYSEASAKVMQVLSRYDPNLVQFGLDEAAL 181
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
DITE+CR + +I E+R V + GLTCSAG+ PN+++AK+ +D+NKPNGQF L
Sbjct: 182 DITELCRNPEKTPDQIVAEIRQDVRDTTGLTCSAGIGPNQMVAKMLADVNKPNGQFRLTT 241
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
+ +FI +L +RKI G+G+V E +L + +N C +++ + + L FS +TA FL
Sbjct: 242 P-AEIESFIENLTVRKIFGVGQVQEKMLAALGCVN-CSDLIDQRAKLFLGFSDATAKSFL 299
Query: 188 SVGLGL--GSTNTPQ--ARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLR 243
+ G+ G N + +R R+S S+E TF +++ L ++E LS D+ L+
Sbjct: 300 AAAKGICDGLVNDSEISSRTRRSKSAETTFKDSDNVEFLTEVCHHLSERLSEDLAISDLQ 359
Query: 244 GRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELP----VSLRLIGLRVT 299
G+ +T+K KT+SF+V +R+V L+ S + I A+ +LK+ L LRL+G+R++
Sbjct: 360 GKLITVKFKTSSFDVFSRSVALELPTRSLKTISTQATRVLKSMLARNPGTKLRLLGVRMS 419
Query: 300 QFNEDKVRAPSDPTQKTLTNFMTSGHASKKIVGDQNSLGSDINDDCLIDDKE 351
F E +D Q TL+ S A + + +CLI+ E
Sbjct: 420 SFQE------ADGKQATLSQLFKSTAAPPR---------DEPKTECLIEKSE 456
>gi|403256450|ref|XP_003920890.1| PREDICTED: DNA polymerase kappa isoform 1 [Saimiri boliviensis
boliviensis]
gi|403256452|ref|XP_003920891.1| PREDICTED: DNA polymerase kappa isoform 2 [Saimiri boliviensis
boliviensis]
Length = 863
Score = 218 bits (556), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 117/262 (44%), Positives = 168/262 (64%), Gaps = 10/262 (3%)
Query: 77 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 136
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ + DR AVM FI
Sbjct: 281 GTSAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPDRQAVMDFI 340
Query: 137 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 196
LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGST
Sbjct: 341 KDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGST 399
Query: 197 NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 256
+ + RKS+S ERTFS Y E+ L+ D+QKEGL+GRT+T+KLK +F
Sbjct: 400 HLTRDGERKSMSVERTFSEINKAEEQYSLCQELCSELAQDLQKEGLKGRTVTIKLKNVNF 459
Query: 257 EVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVRAPS 310
EV+TRA T+ IS++E+I A LLK E+ P+ LRL+G+R++ F ++ R
Sbjct: 460 EVKTRASTVSSVISTAEEIFAIAKELLKTEIDADFPHPLRLRLMGVRISSFPSEEDRKHQ 519
Query: 311 DPTQKTLTNFMTSGHASKKIVG 332
Q+++ F+ +G+ + G
Sbjct: 520 ---QRSIIAFLQAGNQTPSASG 538
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 44/69 (63%), Positives = 53/69 (76%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFGVRAAMPGFIA++LCP LI VP +F KY S +++ YDPNFMA SLDEAYL
Sbjct: 143 ARRFGVRAAMPGFIAKRLCPHLIIVPPNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYL 202
Query: 68 DITEVCRER 76
+IT+ +ER
Sbjct: 203 NITKHLQER 211
>gi|156345284|ref|XP_001621312.1| hypothetical protein NEMVEDRAFT_v1g231426 [Nematostella vectensis]
gi|156207107|gb|EDO29212.1| predicted protein [Nematostella vectensis]
Length = 501
Score = 218 bits (556), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 135/382 (35%), Positives = 205/382 (53%), Gaps = 73/382 (19%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKY------------------------TYYS 43
ARR+GVRAAMPGFIA+KLCP LI VP F KY Y
Sbjct: 125 ARRYGVRAAMPGFIAKKLCPHLIIVPLHFDKYRAVSKIVRGIFREYDPRFVPMSLDEAYL 184
Query: 44 DLT----------------RKVFCKYDPNFMAASLDEAYLDITEVCR------------- 74
DLT +KV+ + P+ S E+ +E C
Sbjct: 185 DLTDYLIERQRKTEKRLFYKKVYRQTSPSAGVPSESES----SEACGSNTAQESENVPSV 240
Query: 75 --------ERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP 126
E G ++ +E+R + E LT SAG+A N LLAKVC+D NKPNGQF L
Sbjct: 241 AESVGEPIEFGNDVKDVVQEIRFRIENETQLTASAGIACNVLLAKVCTDCNKPNGQFYLK 300
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFF 186
DR +++F+ +LPIRKI GIG+V+E +L+ G+ TC ++ +K LL + S ++ F
Sbjct: 301 PDREEIVSFVKTLPIRKISGIGRVSEQMLK-ALGVITCADLFEKRDLLVLLHSDISSRFL 359
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRT 246
+ V LGLG+T R RKS+ +ERTFS + A L+ + ++ + ++ DM +EGLR +T
Sbjct: 360 IEVALGLGATRLETDRGRKSLGTERTFSEISNPAQLFSECEQLCKAIAVDMNEEGLRPKT 419
Query: 247 LTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQ 300
+T+KLKT +FE++TR+V+ ++ I+S ++++ A LL E+ P+ LRL+G + +
Sbjct: 420 VTIKLKTINFELKTRSVSFRQGITSEKELIASAFDLLGKEIKACEPKPLKLRLMGYKAGK 479
Query: 301 FNEDKVRAPSDPTQKTLTNFMT 322
+ + S P ++T+ F +
Sbjct: 480 -RRSQGKVGSQPKKRTMETFWS 500
>gi|336371762|gb|EGO00102.1| hypothetical protein SERLA73DRAFT_53034 [Serpula lacrymans var.
lacrymans S7.3]
Length = 446
Score = 218 bits (556), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 114/274 (41%), Positives = 162/274 (59%), Gaps = 15/274 (5%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++GVR+ MPGFIA+KLCPELI V +FT+Y SD +F +YDPN +AA DE YL
Sbjct: 145 ARKYGVRSGMPGFIAKKLCPELILVNINFTRYQEMSDKVMDIFRRYDPNMLAAGCDEGYL 204
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
+IT C E + +E+R V++E LT SAG+APN+ NKPNGQF LP
Sbjct: 205 NITAYCEEHNLDPQACVQEMRAFVHKETNLTVSAGIAPNK---------NKPNGQFYLPF 255
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
DR ++ +F+ LPIR+I G+G+V E +L D GI TC ++ + L + F L
Sbjct: 256 DRESIKSFMQDLPIRRIPGVGRVNERLL-DAIGIKTCGDIYTHRATLSLMDKQFGLQFLL 314
Query: 188 SVGLGLGSTNT-PQARFRKSISSE----RTFSVTEDKALLYRKLAEIAEMLSADMQKEGL 242
+ LG+ S P R + I+S RTFS D+ + KL E+A L D ++ G
Sbjct: 315 RIHLGIASNVVEPGKREERKIASAKVHFRTFSTLSDRQQILNKLEEVAAELEDDTERNGW 374
Query: 243 RGRTLTLKLKTASFEVRTRAVTLQKYISSSEDIL 276
G+T+TLK K +++V TRA + ++IS+ +D L
Sbjct: 375 TGKTVTLKYKLNTYQVYTRAKSFDRWISTKKDDL 408
>gi|431907837|gb|ELK11444.1| DNA polymerase kappa [Pteropus alecto]
Length = 868
Score = 218 bits (555), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 120/265 (45%), Positives = 171/265 (64%), Gaps = 16/265 (6%)
Query: 77 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 135
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 287 GTSAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 345
Query: 136 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 195
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 346 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGS 404
Query: 196 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 255
T+ + RKS+S ERTFS Y E+ L+ D+QKEGL+GRT+T+KLK +
Sbjct: 405 THLARDAERKSMSVERTFSEISKAEEQYSLCQELCSELAQDLQKEGLKGRTVTIKLKNVN 464
Query: 256 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQF--NEDKVR 307
FEV+TRA T+ +S++E+I A LLK E+ P+ LRL+G+R++ F EDK
Sbjct: 465 FEVKTRAYTVSSVVSTAEEIFAIAKELLKTEIDADFPHPLRLRLMGVRLSSFPNEEDKKH 524
Query: 308 APSDPTQKTLTNFMTSGHASKKIVG 332
Q+++ +F+ +G+ + G
Sbjct: 525 Q-----QRSIIDFLQAGNQTLSATG 544
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 43/69 (62%), Positives = 54/69 (78%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFGVRAAMPGFIA++LCP+LI +P +F KY S +++ YDPNFMA SLDEAYL
Sbjct: 143 ARRFGVRAAMPGFIAKRLCPQLIIIPPNFDKYRAVSREVKEILADYDPNFMAMSLDEAYL 202
Query: 68 DITEVCRER 76
+IT+ +ER
Sbjct: 203 NITKHLQER 211
>gi|350637497|gb|EHA25854.1| hypothetical protein ASPNIDRAFT_189582 [Aspergillus niger ATCC
1015]
Length = 604
Score = 217 bits (553), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 119/300 (39%), Positives = 183/300 (61%), Gaps = 7/300 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG R+ M F+A+KLCP+LI +P ++ KYT + R +F +YDP F +AS+DEAYL
Sbjct: 155 ARKFGCRSGMASFVAKKLCPQLICLPQNYEKYTAKAKEIRAIFAQYDPTFESASIDEAYL 214
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
++T C E + E + +R V E+ ++ SAG+A N +AK+ S+ NKPNGQF +PN
Sbjct: 215 NLTAYCTENELDPEEAVQRMRAEVLEKTKISVSAGIAANAKIAKIASNKNKPNGQFCVPN 274
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
+R A+M F+ LP+RK+ G+G+V E L D GI +C ++ + ++L +F F +
Sbjct: 275 EREAIMKFMEELPVRKVNGVGRVFEREL-DAIGIKSCGDIYPQRAILTKLFGEKAFHFLV 333
Query: 188 SVGLGLGSTN-TPQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
LGLG T P + RKS+ +ERTF +K KL IAE L D+ + +GR
Sbjct: 334 QCYLGLGRTKIQPVENYERKSVGTERTFHEIGNKEEFRAKLWSIAEELEKDLARTEFKGR 393
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLRLIGLRVTQF 301
TL LK+K A+FEV +R + +S+++D+ + + L+ E+P + +RL+GLR T
Sbjct: 394 TLVLKVKLATFEVLSRQCQPPRAVSTAKDLYAFSLPMLEKLEKEMPDLKMRLLGLRCTNL 453
>gi|296818533|ref|XP_002849603.1| DNA polymerase kappa [Arthroderma otae CBS 113480]
gi|238840056|gb|EEQ29718.1| DNA polymerase kappa [Arthroderma otae CBS 113480]
Length = 612
Score = 217 bits (552), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 118/307 (38%), Positives = 175/307 (57%), Gaps = 7/307 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG R+ M F+A+KLCP+LI +P ++ KY + R + YDP+F +AS+DEAYL
Sbjct: 162 ARKFGCRSGMASFVAKKLCPQLICIPQNYDKYNAKAREIRAILANYDPDFESASVDEAYL 221
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
+IT+ C + ++LR + + +T SAG+A N +AK+ S+ NKPNGQF +P+
Sbjct: 222 NITQYCATNNVDPQAAVQQLRDEIAAQTRVTVSAGIAANAKIAKISSNWNKPNGQFHVPS 281
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
+R A+M F++ +P+RK+ G+G+V E L GI TC ++ Q +L +F H F +
Sbjct: 282 ERAAIMEFMAKIPVRKVNGVGRVFEREL-GAIGITTCGDIYQFRGMLTQLFGHKAFCFLM 340
Query: 188 SVGLGLGSTN-TPQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
LGLG T P F RKSI +E TF+ D L KL A L D++ +GR
Sbjct: 341 QCYLGLGRTRIQPAGTFPRKSIGTEHTFADLGDLHQLQEKLKWTASELEKDLRSAETKGR 400
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL----KAELPVSLRLIGLRVTQF 301
TL LK+K +FEV +R K + + D+ K++ LL K + +RL+GLR T
Sbjct: 401 TLVLKVKLHTFEVLSRQTVAPKPLMLAGDLYKYSLPLLAKLYKERPQMKIRLMGLRCTNL 460
Query: 302 NEDKVRA 308
K A
Sbjct: 461 VSTKREA 467
>gi|167522010|ref|XP_001745343.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163776301|gb|EDQ89921.1| predicted protein [Monosiga brevicollis MX1]
Length = 456
Score = 216 bits (551), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 128/328 (39%), Positives = 182/328 (55%), Gaps = 50/328 (15%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR+AMPG+IA +LCPELI V F Y S + V +YDPNF + SLDEAYL
Sbjct: 131 ARKFGVRSAMPGYIALRLCPELILVKPRFHAYEAASRQLQAVMAQYDPNFRSVSLDEAYL 190
Query: 68 DITEVCRE----------------------------------------RGISGIE----- 82
DIT+ R ++ +E
Sbjct: 191 DITDYMARLTPGDVAQLPPLTTVADPPLVQEANSADSKPGMATDSAGARNLTTLEGRALA 250
Query: 83 --IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLP 140
+ ++RT ++E LT SAG+A NR+LAK+ SD NKP+GQF LP DR A++ F++++P
Sbjct: 251 ARVVHQMRTRMHETTQLTVSAGIACNRMLAKIGSDQNKPDGQFCLPADRAAILAFLANMP 310
Query: 141 IRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQ 200
RKI GIGKVTE ILR+ I C+ +LQ+ +LL +F+ + DFF+ LG+ S NT +
Sbjct: 311 TRKIPGIGKVTEQILRE-LDITNCQALLQQRALLKLLFTPISFDFFMRSALGIASNNTRK 369
Query: 201 ARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRT 260
RKSI E TF L K + + DM+++ L GR++ LKLKT F+V+
Sbjct: 370 RSERKSIGHETTFRELNQVPDLEDKCLHLCHKTALDMERKALLGRSVCLKLKTVDFKVKQ 429
Query: 261 RAVTLQKYISSSEDILKHASV-LLKAEL 287
R+V L + ++ E ++K A++ LL EL
Sbjct: 430 RSVLLPAH-TADEPVIKRAALGLLHREL 456
>gi|417405027|gb|JAA49239.1| Putative dna polymerase kappa [Desmodus rotundus]
Length = 866
Score = 216 bits (549), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 117/257 (45%), Positives = 168/257 (65%), Gaps = 16/257 (6%)
Query: 77 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 135
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 286 GTSAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 344
Query: 136 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 195
I LP+RK+ GIGKVTE +L+ GI TC E+ ++ +LL +FS ++ +FL + +GLGS
Sbjct: 345 IKDLPLRKVSGIGKVTEKMLK-ALGIITCTELYEQRALLSLLFSETSWRYFLQISMGLGS 403
Query: 196 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 255
T+ P+ RKS+S ERTFS Y E+ L+ D+QKEGL+GRT+T+KLK +
Sbjct: 404 THLPRDGERKSMSVERTFSEMSKAEEQYSLCQELCSELAQDLQKEGLKGRTVTIKLKNVN 463
Query: 256 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQF--NEDKVR 307
FEV+TRA T+ +S++E+I A LL+ E+ P+ LRL+G+R++ F EDK
Sbjct: 464 FEVKTRASTVSSVVSTAEEIFAIAKELLRTEIDADFPRPLRLRLMGVRLSSFLNEEDKKH 523
Query: 308 APSDPTQKTLTNFMTSG 324
Q+++ F+ SG
Sbjct: 524 Q-----QRSIVGFLQSG 535
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 43/69 (62%), Positives = 51/69 (73%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFGVRAAMPGFIA+KLCP+L VP +F Y S +++ YDPNFMA SLDEAYL
Sbjct: 143 ARRFGVRAAMPGFIAKKLCPQLTIVPPNFDIYRAVSREVKEILADYDPNFMATSLDEAYL 202
Query: 68 DITEVCRER 76
+IT +ER
Sbjct: 203 NITTHLQER 211
>gi|320033815|gb|EFW15761.1| DNA-directed polymerase kappa [Coccidioides posadasii str.
Silveira]
Length = 609
Score = 216 bits (549), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 122/300 (40%), Positives = 177/300 (59%), Gaps = 7/300 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++G R+ M F+A+KLCP+LI +P ++ KYT + R + YDP F +AS+DEAYL
Sbjct: 150 ARKYGCRSGMASFVAKKLCPQLICLPQNYAKYTAKAKEIRAILANYDPQFESASIDEAYL 209
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
+ITE C + E ++LR + E +T SAG+A N +AK+ S+ NKPNGQF +P+
Sbjct: 210 NITEYCLTNNMEPQEAVQKLRNEIAVETKITVSAGIAANAKIAKIASNWNKPNGQFYVPS 269
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
DR A+M F++ +P+RK+ G+G+V E L V GI C ++ +L +F F +
Sbjct: 270 DRAAIMEFMAKIPVRKVNGVGRVFERELEAV-GIKMCSDIYSLRGMLATLFGQKAFQFLM 328
Query: 188 SVGLGLGSTNTPQA--RFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
LGLG TN A R RKS+ +ERTF E A L KL A L D++ +GR
Sbjct: 329 QCYLGLGRTNIAPAEERQRKSVGTERTFRDLEGFASLQDKLKSTAIELERDLRVAEFKGR 388
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL---KAELP-VSLRLIGLRVTQF 301
TL LK+K +FE+ +R V K + ++D+ K+A LL E P + +RL+GLR T
Sbjct: 389 TLVLKIKLHTFEIISRQVVTPKPVYLADDLYKYALPLLTKINKETPNLKIRLMGLRCTNL 448
>gi|145518886|ref|XP_001445315.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124412759|emb|CAK77918.1| unnamed protein product [Paramecium tetraurelia]
Length = 591
Score = 215 bits (548), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 133/386 (34%), Positives = 206/386 (53%), Gaps = 21/386 (5%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++GVR+AMPGF+A+KLCP++IFVP F KY S++ + KYD N + LDEA L
Sbjct: 127 ARKYGVRSAMPGFVAKKLCPDIIFVPCHFEKYKSVSNIFMTILKKYDDNLESMGLDEANL 186
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+TE + + E +R ++ LT S GV PN+++AK+ S+INKPNG V+
Sbjct: 187 DLTEYINNSQVDPATLCENIRKDIFIATQLTASCGVGPNKMIAKLASEINKPNGLHVVEQ 246
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
AV+ F+ LP+RKI GIG +TE IL + NTC+++ + L +F+ T ++
Sbjct: 247 SPTAVLGFLEKLPVRKIPGIGNITEQILSGL-NFNTCKDVRDRADELYIIFTPKTFEYIF 305
Query: 188 SVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTL 247
G+ + + SIS +RTFS + K+ IAE L+ DMQ+E G L
Sbjct: 306 YSCWGVARNCHVEFEDQLSISCQRTFSSISTQKEFEDKVDYIAEKLAEDMQQEEKVGNHL 365
Query: 248 TLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK-AELPVSLRLIGLRVTQF-NEDK 305
TL +KT FE+R +++ L +Y + ++ I + LLK +L +RL+GL++ NE +
Sbjct: 366 TLIIKTCKFEIRNKSLQLNQYTNQAKQIAIYGKQLLKIMQLDEPIRLLGLKMGSLANEKQ 425
Query: 306 VRAPSDPTQKTLTNFMTSGHASKKIVGDQNSLGSDINDDCLIDDKETSVSLDVSETNNYE 365
++ S T KK NSL + I + + K +S D N +
Sbjct: 426 MQKQSIST------------YFKKQFDKSNSLENQIASN--LGSKSHQISEDGDSINKVQ 471
Query: 366 FGDPVCDNSLPDL--NDENCSFSNKI 389
P + S P++ DE + SN++
Sbjct: 472 LQQP--EQSKPEIISEDEASNISNQL 495
>gi|395510536|ref|XP_003759530.1| PREDICTED: DNA polymerase kappa [Sarcophilus harrisii]
Length = 865
Score = 215 bits (548), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 122/283 (43%), Positives = 177/283 (62%), Gaps = 13/283 (4%)
Query: 77 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 136
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ + +R AVM FI
Sbjct: 291 GTSADEVVKEIRFRIEQKTSLTASAGIAPNTMLAKVCSDKNKPNGQYQISPNRQAVMDFI 350
Query: 137 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 196
LPIRK+ GIGKVTE +L+ GI TC ++ QK +LL +FS ++ FL + LGLGST
Sbjct: 351 KDLPIRKVPGIGKVTEKMLK-ALGIVTCSDLYQKRALLSLLFSETSWHSFLHISLGLGST 409
Query: 197 NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 256
+ RKS+S ERTFS LY E+ L+ D+Q+EGL+G+T+T+KLK +F
Sbjct: 410 QMERDGERKSMSIERTFSEINKAEELYSLCQELCNDLAQDLQREGLKGKTVTIKLKNVNF 469
Query: 257 EVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVRAPS 310
EV+TRA T+ +S++E+I A LLK E+ P+ LRL+G+R++ F+ ++ R
Sbjct: 470 EVKTRASTVAAVVSTAEEIFAIAKELLKVEIDADYPQPLRLRLMGVRISGFSSEEDRKHR 529
Query: 311 DPTQKTLTNFMTSGHASKKIVGDQNSLGSDINDDCLIDDKETS 353
QK++ +F+ G + VG S+ N D ++ ETS
Sbjct: 530 ---QKSIISFLKVGSHTIDPVG---SVLEKNNQDQVMKPPETS 566
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/69 (63%), Positives = 52/69 (75%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFGVRAAMPGFIA++LCP+L VP +F KY S R++ YDPNFMA SLDEAYL
Sbjct: 142 ARRFGVRAAMPGFIAKRLCPQLTIVPPNFDKYREVSKEVREILADYDPNFMAMSLDEAYL 201
Query: 68 DITEVCRER 76
+IT+ ER
Sbjct: 202 NITKHLEER 210
>gi|380813532|gb|AFE78640.1| DNA polymerase kappa [Macaca mulatta]
Length = 870
Score = 215 bits (548), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 118/263 (44%), Positives = 169/263 (64%), Gaps = 12/263 (4%)
Query: 77 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 135
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 287 GTSAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 345
Query: 136 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 195
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 346 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGS 404
Query: 196 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 255
T + RKS+S ERTFS Y E+ L+ D+QKEGL+GRT+T+KLK +
Sbjct: 405 TYLTRDGERKSMSVERTFSEINKAEEQYSLCEELCSELARDLQKEGLKGRTVTIKLKNVN 464
Query: 256 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVRAP 309
FEV+TRA T+ +S++E+I A LLK E+ P+ LRL+G+R++ F ++ R
Sbjct: 465 FEVKTRASTVSSVVSTAEEIFAIAKELLKTEIDADFPHPLRLRLMGVRISSFPNEEDRKH 524
Query: 310 SDPTQKTLTNFMTSGHASKKIVG 332
Q+++ F+ +G+ + G
Sbjct: 525 Q---QRSIIGFLQAGNQALSATG 544
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/69 (63%), Positives = 53/69 (76%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFGVRAAMPGFIA++LCP+LI VP +F KY S +++ YDPNFMA SLDEAYL
Sbjct: 143 ARRFGVRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYL 202
Query: 68 DITEVCRER 76
+IT+ ER
Sbjct: 203 NITKHLEER 211
>gi|355691402|gb|EHH26587.1| DNA polymerase kappa [Macaca mulatta]
Length = 870
Score = 215 bits (548), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 118/263 (44%), Positives = 169/263 (64%), Gaps = 12/263 (4%)
Query: 77 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 135
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 287 GTSAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 345
Query: 136 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 195
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 346 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGS 404
Query: 196 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 255
T + RKS+S ERTFS Y E+ L+ D+QKEGL+GRT+T+KLK +
Sbjct: 405 TYLTRDGERKSMSVERTFSEINKAEEQYSLCEELCSELARDLQKEGLKGRTVTIKLKNVN 464
Query: 256 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVRAP 309
FEV+TRA T+ +S++E+I A LLK E+ P+ LRL+G+R++ F ++ R
Sbjct: 465 FEVKTRASTVSSVVSTAEEIFAIAKELLKTEIDADFPHPLRLRLMGVRISSFPNEEDRKH 524
Query: 310 SDPTQKTLTNFMTSGHASKKIVG 332
Q+++ F+ +G+ + G
Sbjct: 525 Q---QRSIIGFLQAGNQALSATG 544
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/69 (63%), Positives = 53/69 (76%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFGVRAAMPGFIA++LCP+LI VP +F KY S +++ YDPNFMA SLDEAYL
Sbjct: 143 ARRFGVRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYL 202
Query: 68 DITEVCRER 76
+IT+ ER
Sbjct: 203 NITKHLEER 211
>gi|109077621|ref|XP_001105220.1| PREDICTED: DNA polymerase kappa isoform 5 [Macaca mulatta]
gi|297294555|ref|XP_002804464.1| PREDICTED: DNA polymerase kappa [Macaca mulatta]
Length = 870
Score = 215 bits (548), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 118/263 (44%), Positives = 169/263 (64%), Gaps = 12/263 (4%)
Query: 77 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 135
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 287 GTSAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 345
Query: 136 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 195
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 346 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGS 404
Query: 196 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 255
T + RKS+S ERTFS Y E+ L+ D+QKEGL+GRT+T+KLK +
Sbjct: 405 TYLTRDGERKSMSVERTFSEINKAEEQYSLCEELCSELARDLQKEGLKGRTVTIKLKNVN 464
Query: 256 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVRAP 309
FEV+TRA T+ +S++E+I A LLK E+ P+ LRL+G+R++ F ++ R
Sbjct: 465 FEVKTRASTVSSVVSTAEEIFAIAKELLKTEIDADFPHPLRLRLMGVRISSFPNEEDRKH 524
Query: 310 SDPTQKTLTNFMTSGHASKKIVG 332
Q+++ F+ +G+ + G
Sbjct: 525 Q---QRSIIGFLQAGNQALSATG 544
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/69 (63%), Positives = 53/69 (76%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFGVRAAMPGFIA++LCP+LI VP +F KY S +++ YDPNFMA SLDEAYL
Sbjct: 143 ARRFGVRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYL 202
Query: 68 DITEVCRER 76
+IT+ ER
Sbjct: 203 NITKHLEER 211
>gi|402871879|ref|XP_003899875.1| PREDICTED: DNA polymerase kappa isoform 1 [Papio anubis]
Length = 870
Score = 215 bits (548), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 118/263 (44%), Positives = 169/263 (64%), Gaps = 12/263 (4%)
Query: 77 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 135
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 287 GTSAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 345
Query: 136 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 195
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 346 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGS 404
Query: 196 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 255
T + RKS+S ERTFS Y E+ L+ D+QKEGL+GRT+T+KLK +
Sbjct: 405 TYLTRDGERKSMSVERTFSEINKAEEQYSLCEELCSELARDLQKEGLKGRTVTIKLKNVN 464
Query: 256 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVRAP 309
FEV+TRA T+ +S++E+I A LLK E+ P+ LRL+G+R++ F ++ R
Sbjct: 465 FEVKTRASTVSSVVSTAEEIFAIAKELLKTEIDADFPHPLRLRLMGVRISSFPNEEDRKH 524
Query: 310 SDPTQKTLTNFMTSGHASKKIVG 332
Q+++ F+ +G+ + G
Sbjct: 525 Q---QRSIIGFLQAGNQALSATG 544
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 43/69 (62%), Positives = 53/69 (76%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVRAAMPGFIA++LCP+LI VP +F KY S +++ YDPNFMA SLDEAYL
Sbjct: 143 ARKFGVRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYL 202
Query: 68 DITEVCRER 76
+IT+ ER
Sbjct: 203 NITKHLEER 211
>gi|355750000|gb|EHH54338.1| DNA polymerase kappa [Macaca fascicularis]
Length = 870
Score = 215 bits (548), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 118/263 (44%), Positives = 169/263 (64%), Gaps = 12/263 (4%)
Query: 77 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 135
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 287 GTSAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 345
Query: 136 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 195
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 346 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGS 404
Query: 196 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 255
T + RKS+S ERTFS Y E+ L+ D+QKEGL+GRT+T+KLK +
Sbjct: 405 TYLTRDGERKSMSVERTFSEINKAEEQYSLCEELCSELARDLQKEGLKGRTVTIKLKNVN 464
Query: 256 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVRAP 309
FEV+TRA T+ +S++E+I A LLK E+ P+ LRL+G+R++ F ++ R
Sbjct: 465 FEVKTRASTVSSVVSTAEEIFAIAKELLKTEIEADFPHPLRLRLMGVRISSFPNEEDRKH 524
Query: 310 SDPTQKTLTNFMTSGHASKKIVG 332
Q+++ F+ +G+ + G
Sbjct: 525 Q---QRSIIGFLQAGNQALSATG 544
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/69 (63%), Positives = 53/69 (76%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFGVRAAMPGFIA++LCP+LI VP +F KY S +++ YDPNFMA SLDEAYL
Sbjct: 143 ARRFGVRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYL 202
Query: 68 DITEVCRER 76
+IT+ ER
Sbjct: 203 NITKHLEER 211
>gi|303309978|ref|XP_003065002.1| ImpB/MucB/SamB family protein [Coccidioides posadasii C735 delta
SOWgp]
gi|240104661|gb|EER22857.1| ImpB/MucB/SamB family protein [Coccidioides posadasii C735 delta
SOWgp]
Length = 609
Score = 215 bits (548), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 122/300 (40%), Positives = 177/300 (59%), Gaps = 7/300 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++G R+ M F+A+KLCP+LI +P ++ KYT + R + YDP F +AS+DEAYL
Sbjct: 150 ARKYGCRSGMASFVAKKLCPQLICLPQNYAKYTAKAKEIRAILANYDPQFESASIDEAYL 209
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
+ITE C + E ++LR + E +T SAG+A N +AK+ S+ NKPNGQF +P+
Sbjct: 210 NITEYCLTNNMEPQEAVQKLRNEIAVETKITVSAGIAANAKIAKIASNWNKPNGQFYVPS 269
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
DR A+M F++ +P+RK+ G+G+V E L V GI C ++ +L +F F +
Sbjct: 270 DRAAIMEFMAKIPVRKVNGVGRVFERELEAV-GIKMCSDIYSLRGMLATLFGQKAFQFLM 328
Query: 188 SVGLGLGSTNTPQA--RFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
LGLG TN A R RKS+ +ERTF E A L KL A L D++ +GR
Sbjct: 329 QCYLGLGRTNIAPAEERQRKSVGTERTFRDLEGFASLQDKLKSTAIELERDLRVAEFKGR 388
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL---KAELP-VSLRLIGLRVTQF 301
TL LK+K +FE+ +R V K + ++D+ K+A LL E P + +RL+GLR T
Sbjct: 389 TLVLKIKLHTFEIISRQVVTPKPVYLADDLYKYALPLLTKINKETPNLKIRLMGLRCTNL 448
>gi|145517234|ref|XP_001444500.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124411922|emb|CAK77103.1| unnamed protein product [Paramecium tetraurelia]
Length = 591
Score = 215 bits (548), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 117/308 (37%), Positives = 178/308 (57%), Gaps = 3/308 (0%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR+AMPGF+A+KLCPE+IF+P F KY S++ + KYD N + LDEA L
Sbjct: 127 ARKFGVRSAMPGFVAKKLCPEIIFIPCHFEKYKSVSNIFMTILKKYDDNLESMGLDEANL 186
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+TE + E +R + LT S GV PN+++AK+ S+INKPNG V+
Sbjct: 187 DLTEYINNSQEDPAILCENIRKDILLATQLTASCGVGPNKMIAKLASEINKPNGLHVVEQ 246
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
AV+ F+ LPIRKI GIG +TE IL + NTC+++ + L +F+ T ++
Sbjct: 247 SATAVLNFLEKLPIRKIPGIGNITEQILSGL-NFNTCKDVRDRADELYVIFTPKTFEYIF 305
Query: 188 SVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTL 247
G+ + + SIS +RTFS + K+ IAE L+ +MQ E G L
Sbjct: 306 YSCWGVARNYHVEFEDQHSISCQRTFSSISTQREFEDKVDYIAEKLAEEMQSEEKVGNHL 365
Query: 248 TLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK-AELPVSLRLIGLRVTQF-NEDK 305
TL +KT+ FE+R++++ L +Y + ++ I + LLK +L +RL+GL+++ NE +
Sbjct: 366 TLIIKTSKFEIRSKSLQLNQYTNQAKQIAIYGKQLLKIMQLDEPIRLLGLKMSSLANEKQ 425
Query: 306 VRAPSDPT 313
++ S T
Sbjct: 426 IQKQSIST 433
>gi|334325286|ref|XP_001368809.2| PREDICTED: DNA polymerase kappa [Monodelphis domestica]
Length = 856
Score = 215 bits (548), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 117/264 (44%), Positives = 169/264 (64%), Gaps = 14/264 (5%)
Query: 77 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 136
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +P R AVM FI
Sbjct: 280 GTSAEEVVKEIRFRIKQKTSLTASAGIAPNTVLAKVCSDKNKPNGQYQIPPTRQAVMDFI 339
Query: 137 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 196
LPIRK+ GIGKVTE +L+ GI TC ++ QK +LL +FS ++ FL + LGLGST
Sbjct: 340 KDLPIRKVPGIGKVTEKMLK-ALGIITCSDLYQKRALLSLLFSETSWHSFLHISLGLGST 398
Query: 197 NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 256
+ RKS S ERTF+ LY E+ L+ D+Q+EGL+G+T+T+KLK +F
Sbjct: 399 QMERDGERKSRSIERTFTEISKAEELYSLCQELCSDLAQDLQREGLKGKTVTIKLKNVNF 458
Query: 257 EVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVRAPS 310
EV+TRA T+ +S++E+I A LLKAE+ P+ LRL+G+R++ F ++
Sbjct: 459 EVKTRASTVAAVVSTAEEIFAIAKELLKAEIDADYPQPLRLRLMGVRISGFANEE----- 513
Query: 311 DPT--QKTLTNFMTSGHASKKIVG 332
DP Q+++ +F+ +G S +G
Sbjct: 514 DPKNRQRSIISFLKAGGHSLDTIG 537
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 43/69 (62%), Positives = 51/69 (73%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFGVRAAMPGFIA++LCP+L V +F KY S R++ YDPNFMA SLDEAYL
Sbjct: 134 ARRFGVRAAMPGFIAKRLCPQLTIVAPNFDKYRKISKEVREILADYDPNFMAMSLDEAYL 193
Query: 68 DITEVCRER 76
+IT+ ER
Sbjct: 194 NITKHLEER 202
>gi|281339406|gb|EFB14990.1| hypothetical protein PANDA_005468 [Ailuropoda melanoleuca]
Length = 828
Score = 215 bits (547), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 119/265 (44%), Positives = 171/265 (64%), Gaps = 17/265 (6%)
Query: 77 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 135
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 287 GTSAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 345
Query: 136 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 195
I +LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ FL + LGLGS
Sbjct: 346 IKNLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHHFLHISLGLGS 404
Query: 196 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 255
T+ + RKS+S ERTFS Y E+ L+ D+QKEGL+GRT+T+KLK +
Sbjct: 405 THLARDGERKSMSVERTFSEVSKPEEQYSLCQELCSELAQDLQKEGLKGRTITIKLKNVN 464
Query: 256 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQF--NEDKVR 307
FEV+TRA T+ +S++E+I A LL+ E+ P+ LRL+G+R++ F EDK +
Sbjct: 465 FEVKTRASTVSSVVSTAEEIFAIAKELLRTEIDAEFPHPLRLRLMGIRLSSFPNEEDKKQ 524
Query: 308 APSDPTQKTLTNFMTSGHASKKIVG 332
Q+++ F+ +G+ + G
Sbjct: 525 ------QRSIIGFLQAGNQTLSAAG 543
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 44/69 (63%), Positives = 54/69 (78%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFGVRAAMPGFIA++LCP+LI VP +F KY S +++ YDPNFMA SLDEAYL
Sbjct: 143 ARRFGVRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSTEVKEILADYDPNFMAMSLDEAYL 202
Query: 68 DITEVCRER 76
+IT+ +ER
Sbjct: 203 NITQHLQER 211
>gi|301763685|ref|XP_002917258.1| PREDICTED: DNA polymerase kappa-like [Ailuropoda melanoleuca]
Length = 869
Score = 215 bits (547), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 119/265 (44%), Positives = 171/265 (64%), Gaps = 17/265 (6%)
Query: 77 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 135
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 287 GTSAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 345
Query: 136 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 195
I +LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ FL + LGLGS
Sbjct: 346 IKNLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHHFLHISLGLGS 404
Query: 196 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 255
T+ + RKS+S ERTFS Y E+ L+ D+QKEGL+GRT+T+KLK +
Sbjct: 405 THLARDGERKSMSVERTFSEVSKPEEQYSLCQELCSELAQDLQKEGLKGRTITIKLKNVN 464
Query: 256 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQF--NEDKVR 307
FEV+TRA T+ +S++E+I A LL+ E+ P+ LRL+G+R++ F EDK +
Sbjct: 465 FEVKTRASTVSSVVSTAEEIFAIAKELLRTEIDAEFPHPLRLRLMGIRLSSFPNEEDKKQ 524
Query: 308 APSDPTQKTLTNFMTSGHASKKIVG 332
Q+++ F+ +G+ + G
Sbjct: 525 ------QRSIIGFLQAGNQTLSAAG 543
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 44/69 (63%), Positives = 54/69 (78%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFGVRAAMPGFIA++LCP+LI VP +F KY S +++ YDPNFMA SLDEAYL
Sbjct: 143 ARRFGVRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSTEVKEILADYDPNFMAMSLDEAYL 202
Query: 68 DITEVCRER 76
+IT+ +ER
Sbjct: 203 NITQHLQER 211
>gi|402871881|ref|XP_003899876.1| PREDICTED: DNA polymerase kappa isoform 2 [Papio anubis]
Length = 780
Score = 215 bits (547), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 118/263 (44%), Positives = 169/263 (64%), Gaps = 12/263 (4%)
Query: 77 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 135
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 197 GTSAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 255
Query: 136 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 195
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 256 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGS 314
Query: 196 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 255
T + RKS+S ERTFS Y E+ L+ D+QKEGL+GRT+T+KLK +
Sbjct: 315 TYLTRDGERKSMSVERTFSEINKAEEQYSLCEELCSELARDLQKEGLKGRTVTIKLKNVN 374
Query: 256 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVRAP 309
FEV+TRA T+ +S++E+I A LLK E+ P+ LRL+G+R++ F ++ R
Sbjct: 375 FEVKTRASTVSSVVSTAEEIFAIAKELLKTEIDADFPHPLRLRLMGVRISSFPNEEDRKH 434
Query: 310 SDPTQKTLTNFMTSGHASKKIVG 332
Q+++ F+ +G+ + G
Sbjct: 435 Q---QRSIIGFLQAGNQALSATG 454
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 43/69 (62%), Positives = 53/69 (76%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVRAAMPGFIA++LCP+LI VP +F KY S +++ YDPNFMA SLDEAYL
Sbjct: 53 ARKFGVRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYL 112
Query: 68 DITEVCRER 76
+IT+ ER
Sbjct: 113 NITKHLEER 121
>gi|410210590|gb|JAA02514.1| polymerase (DNA directed) kappa [Pan troglodytes]
Length = 871
Score = 214 bits (546), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 118/260 (45%), Positives = 169/260 (65%), Gaps = 16/260 (6%)
Query: 77 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 135
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 287 GTSAQEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 345
Query: 136 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 195
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 346 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGS 404
Query: 196 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 255
T+ + RKS+S ERTFS Y E+ L+ D+QKE L+GRT+T+KLK +
Sbjct: 405 THLTRDGERKSMSVERTFSEINKAEEQYSLCQELCSELAQDLQKERLKGRTVTIKLKNVN 464
Query: 256 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQF--NEDKVR 307
FEV+TRA T+ +S++E+I A LLK E+ P+ LRL+G+R++ F ED+ R
Sbjct: 465 FEVKTRASTVSSVVSTAEEIFAIAKELLKTEIDADFPHPLRLRLMGVRISSFPNEEDRKR 524
Query: 308 APSDPTQKTLTNFMTSGHAS 327
Q+++ F+ +G+ +
Sbjct: 525 Q-----QRSIIGFLQAGNQA 539
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/69 (63%), Positives = 53/69 (76%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFGVRAAMPGFIA++LCP+LI VP +F KY S +++ YDPNFMA SLDEAYL
Sbjct: 143 ARRFGVRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYL 202
Query: 68 DITEVCRER 76
+IT+ ER
Sbjct: 203 NITKHLEER 211
>gi|397478334|ref|XP_003810503.1| PREDICTED: DNA polymerase kappa isoform 1 [Pan paniscus]
gi|397478336|ref|XP_003810504.1| PREDICTED: DNA polymerase kappa isoform 2 [Pan paniscus]
Length = 871
Score = 214 bits (546), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 118/260 (45%), Positives = 169/260 (65%), Gaps = 16/260 (6%)
Query: 77 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 135
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 287 GTSAQEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 345
Query: 136 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 195
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 346 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGS 404
Query: 196 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 255
T+ + RKS+S ERTFS Y E+ L+ D+QKE L+GRT+T+KLK +
Sbjct: 405 THLTRDGERKSMSVERTFSEINKAEEQYSLCQELCSELAQDLQKERLKGRTVTIKLKNVN 464
Query: 256 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQF--NEDKVR 307
FEV+TRA T+ +S++E+I A LLK E+ P+ LRL+G+R++ F ED+ R
Sbjct: 465 FEVKTRASTVSSVVSTAEEIFAIAKELLKTEIDADFPHPLRLRLMGVRISSFPNEEDRKR 524
Query: 308 APSDPTQKTLTNFMTSGHAS 327
Q+++ F+ +G+ +
Sbjct: 525 Q-----QRSIIGFLQAGNQA 539
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 44/69 (63%), Positives = 53/69 (76%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFGVRAAMPGFIA++LCP+LI VP +F KY S +++ YDPNFMA SLDEAYL
Sbjct: 143 ARRFGVRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYL 202
Query: 68 DITEVCRER 76
+IT+ ER
Sbjct: 203 NITKHLEER 211
>gi|114599641|ref|XP_001149179.1| PREDICTED: DNA polymerase kappa isoform 6 [Pan troglodytes]
gi|410294520|gb|JAA25860.1| polymerase (DNA directed) kappa [Pan troglodytes]
Length = 871
Score = 214 bits (546), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 118/260 (45%), Positives = 169/260 (65%), Gaps = 16/260 (6%)
Query: 77 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 135
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 287 GTSAQEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 345
Query: 136 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 195
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 346 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGS 404
Query: 196 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 255
T+ + RKS+S ERTFS Y E+ L+ D+QKE L+GRT+T+KLK +
Sbjct: 405 THLTRDGERKSMSVERTFSEINKAEEQYSLCQELCSELAQDLQKERLKGRTVTIKLKNVN 464
Query: 256 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQF--NEDKVR 307
FEV+TRA T+ +S++E+I A LLK E+ P+ LRL+G+R++ F ED+ R
Sbjct: 465 FEVKTRASTVSSVVSTAEEIFAIAKELLKTEIDADFPHPLRLRLMGVRISSFPNEEDRKR 524
Query: 308 APSDPTQKTLTNFMTSGHAS 327
Q+++ F+ +G+ +
Sbjct: 525 Q-----QRSIIGFLQAGNQA 539
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/69 (63%), Positives = 53/69 (76%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFGVRAAMPGFIA++LCP+LI VP +F KY S +++ YDPNFMA SLDEAYL
Sbjct: 143 ARRFGVRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYL 202
Query: 68 DITEVCRER 76
+IT+ ER
Sbjct: 203 NITKHLEER 211
>gi|326434682|gb|EGD80252.1| hypothetical protein PTSG_13123 [Salpingoeca sp. ATCC 50818]
Length = 860
Score = 214 bits (546), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 125/319 (39%), Positives = 176/319 (55%), Gaps = 20/319 (6%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++GVR+AMPG+I + LCP LI + F Y S + + + YDP+F++ LDEA L
Sbjct: 219 ARKYGVRSAMPGYIGKALCPHLILIKPRFPVYKSVSAIFKSILRDYDPDFLSGGLDEASL 278
Query: 68 DITEVCRER---------GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINK 118
DIT+ + R + + EE+R + LT SAG+A R LAK CSD K
Sbjct: 279 DITDCVQRRMDRDLSLTREATACALVEEMRARILAATNLTASAGIACTRRLAKTCSDWKK 338
Query: 119 PNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 178
PNGQ+ LP +V F+ LPIRK+ GIG VTE +LR G+ T ML++ + L +F
Sbjct: 339 PNGQYFLPFTLDSVTAFLRPLPIRKLSGIGNVTEELLRG-LGVETVAGMLEQRAKLQLLF 397
Query: 179 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQ 238
T FF+ V G+ T + R RKSIS+ERTF T + L L I L+A+MQ
Sbjct: 398 RPRTFQFFMHVAHGVSVPRT-RTRERKSISTERTFDATSSRVQLLSILNRICSKLTAEMQ 456
Query: 239 KEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--------- 289
++ L GR LTLK+K A+F V R+VTL I+ S + ++ EL
Sbjct: 457 EKQLAGRCLTLKVKLATFHVLQRSVTLPTPIADSSVLFAQMRAIMARELEAASPSPSRMP 516
Query: 290 SLRLIGLRVTQFNEDKVRA 308
++RL+G+RV+ + RA
Sbjct: 517 AVRLLGVRVSSLTFGRNRA 535
>gi|410339117|gb|JAA38505.1| polymerase (DNA directed) kappa [Pan troglodytes]
Length = 871
Score = 214 bits (546), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 118/260 (45%), Positives = 169/260 (65%), Gaps = 16/260 (6%)
Query: 77 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 135
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 287 GTSAQEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 345
Query: 136 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 195
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 346 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGS 404
Query: 196 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 255
T+ + RKS+S ERTFS Y E+ L+ D+QKE L+GRT+T+KLK +
Sbjct: 405 THLTRDGERKSMSVERTFSEINKAEEQYSLCQELCSELAQDLQKERLKGRTVTIKLKNVN 464
Query: 256 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQF--NEDKVR 307
FEV+TRA T+ +S++E+I A LLK E+ P+ LRL+G+R++ F ED+ R
Sbjct: 465 FEVKTRASTVSSVVSTAEEIFAIAKELLKTEIDADFPHPLRLRLMGVRISSFPNEEDRKR 524
Query: 308 APSDPTQKTLTNFMTSGHAS 327
Q+++ F+ +G+ +
Sbjct: 525 Q-----QRSIIGFLQAGNQA 539
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/69 (63%), Positives = 53/69 (76%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFGVRAAMPGFIA++LCP+LI VP +F KY S +++ YDPNFMA SLDEAYL
Sbjct: 143 ARRFGVRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYL 202
Query: 68 DITEVCRER 76
+IT+ ER
Sbjct: 203 NITKHLEER 211
>gi|410256758|gb|JAA16346.1| polymerase (DNA directed) kappa [Pan troglodytes]
gi|410256760|gb|JAA16347.1| polymerase (DNA directed) kappa [Pan troglodytes]
Length = 871
Score = 214 bits (546), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 118/260 (45%), Positives = 169/260 (65%), Gaps = 16/260 (6%)
Query: 77 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 135
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 287 GTSAQEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 345
Query: 136 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 195
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 346 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGS 404
Query: 196 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 255
T+ + RKS+S ERTFS Y E+ L+ D+QKE L+GRT+T+KLK +
Sbjct: 405 THLTRDGERKSMSVERTFSEINKAEEQYSLCQELCSELAQDLQKERLKGRTVTIKLKNVN 464
Query: 256 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQF--NEDKVR 307
FEV+TRA T+ +S++E+I A LLK E+ P+ LRL+G+R++ F ED+ R
Sbjct: 465 FEVKTRASTVSSVVSTAEEIFAIAKELLKTEIDADFPHPLRLRLMGVRISSFPNEEDRKR 524
Query: 308 APSDPTQKTLTNFMTSGHAS 327
Q+++ F+ +G+ +
Sbjct: 525 Q-----QRSIIGFLQAGNQA 539
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/69 (63%), Positives = 53/69 (76%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFGVRAAMPGFIA++LCP+LI VP +F KY S +++ YDPNFMA SLDEAYL
Sbjct: 143 ARRFGVRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYL 202
Query: 68 DITEVCRER 76
+IT+ ER
Sbjct: 203 NITKHLEER 211
>gi|332233863|ref|XP_003266124.1| PREDICTED: DNA polymerase kappa isoform 1 [Nomascus leucogenys]
Length = 870
Score = 214 bits (545), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 117/263 (44%), Positives = 169/263 (64%), Gaps = 12/263 (4%)
Query: 77 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 135
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 287 GTSAEEVVKEIRFRIEQKTALTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 345
Query: 136 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 195
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 346 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGS 404
Query: 196 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 255
T+ + RKS+S ERTFS Y E+ L+ D+QKE L+GRT+T+KLK +
Sbjct: 405 THLTRDGERKSMSVERTFSEINKAEEQYSLCQELCSELAQDLQKERLKGRTVTIKLKNVN 464
Query: 256 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVRAP 309
FEV+TRA T+ +S++E+I A LLK E+ P+ LRL+G+R++ F ++ R
Sbjct: 465 FEVKTRASTVSSVVSTAEEIFAIAKELLKTEIDADFPHPLRLRLMGVRISSFPNEEDRKH 524
Query: 310 SDPTQKTLTNFMTSGHASKKIVG 332
Q+++ F+ +G+ + G
Sbjct: 525 Q---QRSIIGFLHAGNQALSATG 544
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 44/69 (63%), Positives = 53/69 (76%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFGVRAAMPGFIA++LCP+LI VP +F KY S +++ YDPNFMA SLDEAYL
Sbjct: 143 ARRFGVRAAMPGFIAKRLCPQLIIVPPNFDKYQAVSKEVKEILADYDPNFMAMSLDEAYL 202
Query: 68 DITEVCRER 76
+IT+ ER
Sbjct: 203 NITKHLEER 211
>gi|410039233|ref|XP_003950572.1| PREDICTED: DNA polymerase kappa [Pan troglodytes]
Length = 781
Score = 214 bits (545), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 118/260 (45%), Positives = 169/260 (65%), Gaps = 16/260 (6%)
Query: 77 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 135
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 197 GTSAQEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 255
Query: 136 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 195
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 256 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGS 314
Query: 196 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 255
T+ + RKS+S ERTFS Y E+ L+ D+QKE L+GRT+T+KLK +
Sbjct: 315 THLTRDGERKSMSVERTFSEINKAEEQYSLCQELCSELAQDLQKERLKGRTVTIKLKNVN 374
Query: 256 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQF--NEDKVR 307
FEV+TRA T+ +S++E+I A LLK E+ P+ LRL+G+R++ F ED+ R
Sbjct: 375 FEVKTRASTVSSVVSTAEEIFAIAKELLKTEIDADFPHPLRLRLMGVRISSFPNEEDRKR 434
Query: 308 APSDPTQKTLTNFMTSGHAS 327
Q+++ F+ +G+ +
Sbjct: 435 Q-----QRSIIGFLQAGNQA 449
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/69 (63%), Positives = 53/69 (76%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFGVRAAMPGFIA++LCP+LI VP +F KY S +++ YDPNFMA SLDEAYL
Sbjct: 53 ARRFGVRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYL 112
Query: 68 DITEVCRER 76
+IT+ ER
Sbjct: 113 NITKHLEER 121
>gi|397478338|ref|XP_003810505.1| PREDICTED: DNA polymerase kappa isoform 3 [Pan paniscus]
Length = 781
Score = 214 bits (545), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 118/260 (45%), Positives = 169/260 (65%), Gaps = 16/260 (6%)
Query: 77 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 135
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 197 GTSAQEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 255
Query: 136 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 195
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 256 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGS 314
Query: 196 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 255
T+ + RKS+S ERTFS Y E+ L+ D+QKE L+GRT+T+KLK +
Sbjct: 315 THLTRDGERKSMSVERTFSEINKAEEQYSLCQELCSELAQDLQKERLKGRTVTIKLKNVN 374
Query: 256 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQF--NEDKVR 307
FEV+TRA T+ +S++E+I A LLK E+ P+ LRL+G+R++ F ED+ R
Sbjct: 375 FEVKTRASTVSSVVSTAEEIFAIAKELLKTEIDADFPHPLRLRLMGVRISSFPNEEDRKR 434
Query: 308 APSDPTQKTLTNFMTSGHAS 327
Q+++ F+ +G+ +
Sbjct: 435 Q-----QRSIIGFLQAGNQA 449
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/69 (63%), Positives = 53/69 (76%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFGVRAAMPGFIA++LCP+LI VP +F KY S +++ YDPNFMA SLDEAYL
Sbjct: 53 ARRFGVRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYL 112
Query: 68 DITEVCRER 76
+IT+ ER
Sbjct: 113 NITKHLEER 121
>gi|7705344|ref|NP_057302.1| DNA polymerase kappa [Homo sapiens]
gi|59798438|sp|Q9UBT6.1|POLK_HUMAN RecName: Full=DNA polymerase kappa; AltName: Full=DINB protein;
Short=DINP
gi|6049286|gb|AAF02540.1|AF163570_1 DINB protein [Homo sapiens]
gi|6463740|dbj|BAA86943.1| DINB1 [Homo sapiens]
gi|30039655|gb|AAP12648.1| polymerase (DNA directed) kappa [Homo sapiens]
gi|119616169|gb|EAW95763.1| polymerase (DNA directed) kappa, isoform CRA_b [Homo sapiens]
gi|119616170|gb|EAW95764.1| polymerase (DNA directed) kappa, isoform CRA_b [Homo sapiens]
gi|119616171|gb|EAW95765.1| polymerase (DNA directed) kappa, isoform CRA_b [Homo sapiens]
gi|189054406|dbj|BAG37179.1| unnamed protein product [Homo sapiens]
Length = 870
Score = 214 bits (544), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 116/258 (44%), Positives = 168/258 (65%), Gaps = 12/258 (4%)
Query: 77 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 135
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 287 GTSAQEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 345
Query: 136 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 195
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 346 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGS 404
Query: 196 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 255
T+ + RKS+S ERTFS Y E+ L+ D+QKE L+GRT+T+KLK +
Sbjct: 405 THLTRDGERKSMSVERTFSEINKAEEQYSLCQELCSELAQDLQKERLKGRTVTIKLKNVN 464
Query: 256 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVRAP 309
FEV+TRA T+ +S++E+I A LLK E+ P+ LRL+G+R++ F ++ R
Sbjct: 465 FEVKTRASTVSSVVSTAEEIFAIAKELLKTEIDADFPHPLRLRLMGVRISSFPNEEDRKH 524
Query: 310 SDPTQKTLTNFMTSGHAS 327
Q+++ F+ +G+ +
Sbjct: 525 Q---QRSIIGFLQAGNQA 539
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 44/69 (63%), Positives = 53/69 (76%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFGVRAAMPGFIA++LCP+LI VP +F KY S +++ YDPNFMA SLDEAYL
Sbjct: 143 ARRFGVRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYL 202
Query: 68 DITEVCRER 76
+IT+ ER
Sbjct: 203 NITKHLEER 211
>gi|6681760|gb|AAF23270.1| DINP protein [Homo sapiens]
Length = 870
Score = 214 bits (544), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 116/258 (44%), Positives = 168/258 (65%), Gaps = 12/258 (4%)
Query: 77 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 135
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 287 GTSAQEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 345
Query: 136 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 195
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 346 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGS 404
Query: 196 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 255
T+ + RKS+S ERTFS Y E+ L+ D+QKE L+GRT+T+KLK +
Sbjct: 405 THLTRDGERKSMSVERTFSEINKAEEQYSLCQELCSELAQDLQKERLKGRTVTIKLKNVN 464
Query: 256 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVRAP 309
FEV+TRA T+ +S++E+I A LLK E+ P+ LRL+G+R++ F ++ R
Sbjct: 465 FEVKTRASTVSSVVSTAEEIFAIAKELLKTEIDADFPHPLRLRLMGVRISSFPNEEDRKH 524
Query: 310 SDPTQKTLTNFMTSGHAS 327
Q+++ F+ +G+ +
Sbjct: 525 Q---QRSIIGFLQAGNQA 539
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 44/69 (63%), Positives = 53/69 (76%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFGVRAAMPGFIA++LCP+LI VP +F KY S +++ YDPNFMA SLDEAYL
Sbjct: 143 ARRFGVRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYL 202
Query: 68 DITEVCRER 76
+IT+ ER
Sbjct: 203 NITKHLEER 211
>gi|426384398|ref|XP_004058756.1| PREDICTED: DNA polymerase kappa isoform 1 [Gorilla gorilla gorilla]
Length = 871
Score = 214 bits (544), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 116/258 (44%), Positives = 168/258 (65%), Gaps = 12/258 (4%)
Query: 77 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 135
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 287 GTSAQEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 345
Query: 136 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 195
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 346 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGS 404
Query: 196 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 255
T+ + RKS+S ERTFS Y E+ L+ D+QKE L+GRT+T+KLK +
Sbjct: 405 THLTRDGERKSMSVERTFSEINKAEEQYSLCQELCSELAQDLQKERLKGRTVTIKLKNVN 464
Query: 256 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVRAP 309
FEV+TRA T+ +S++E+I A LLK E+ P+ LRL+G+R++ F ++ R
Sbjct: 465 FEVKTRASTVSSVVSTAEEIFAIAKELLKTEIDADFPHPLRLRLMGVRISSFPNEEDRKH 524
Query: 310 SDPTQKTLTNFMTSGHAS 327
Q+++ F+ +G+ +
Sbjct: 525 Q---QRSIIGFLQAGNQA 539
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 45/69 (65%), Positives = 53/69 (76%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFGVRAAMPGFIAR+LCP+LI VP +F KY S +++ YDPNFMA SLDEAYL
Sbjct: 143 ARRFGVRAAMPGFIARRLCPQLIIVPPNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYL 202
Query: 68 DITEVCRER 76
+IT+ ER
Sbjct: 203 NITKHLEER 211
>gi|441658787|ref|XP_004091292.1| PREDICTED: DNA polymerase kappa isoform 2 [Nomascus leucogenys]
Length = 780
Score = 214 bits (544), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 117/263 (44%), Positives = 169/263 (64%), Gaps = 12/263 (4%)
Query: 77 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 135
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 197 GTSAEEVVKEIRFRIEQKTALTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 255
Query: 136 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 195
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 256 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGS 314
Query: 196 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 255
T+ + RKS+S ERTFS Y E+ L+ D+QKE L+GRT+T+KLK +
Sbjct: 315 THLTRDGERKSMSVERTFSEINKAEEQYSLCQELCSELAQDLQKERLKGRTVTIKLKNVN 374
Query: 256 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVRAP 309
FEV+TRA T+ +S++E+I A LLK E+ P+ LRL+G+R++ F ++ R
Sbjct: 375 FEVKTRASTVSSVVSTAEEIFAIAKELLKTEIDADFPHPLRLRLMGVRISSFPNEEDRKH 434
Query: 310 SDPTQKTLTNFMTSGHASKKIVG 332
Q+++ F+ +G+ + G
Sbjct: 435 Q---QRSIIGFLHAGNQALSATG 454
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/69 (63%), Positives = 53/69 (76%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFGVRAAMPGFIA++LCP+LI VP +F KY S +++ YDPNFMA SLDEAYL
Sbjct: 53 ARRFGVRAAMPGFIAKRLCPQLIIVPPNFDKYQAVSKEVKEILADYDPNFMAMSLDEAYL 112
Query: 68 DITEVCRER 76
+IT+ ER
Sbjct: 113 NITKHLEER 121
>gi|311249680|ref|XP_003123756.1| PREDICTED: DNA polymerase kappa [Sus scrofa]
Length = 878
Score = 214 bits (544), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 119/264 (45%), Positives = 169/264 (64%), Gaps = 14/264 (5%)
Query: 77 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 135
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R VM F
Sbjct: 294 GTSAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQVVMDF 352
Query: 136 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 195
I LPIRK+ GIGKVTE +L+ GI TC ++ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 353 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTDLYQQRALLSLLFSETSWHYFLHISLGLGS 411
Query: 196 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 255
T P+ RKS+S ERTFS Y E+ L+ D+QKEGL+GRT+TLKLK
Sbjct: 412 TCLPRDGERKSMSVERTFSEINKAEEQYSLCQELCSELAQDLQKEGLKGRTVTLKLKNVD 471
Query: 256 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQF-NEDKVRA 308
FEV+TRA T+ IS++E+I A LL+ E+ P+ LRL+G+R++ F NE++ +
Sbjct: 472 FEVKTRASTVLSVISTAEEIFAIAKELLRTEIDADFPHPLRLRLMGVRLSSFPNEEEKKH 531
Query: 309 PSDPTQKTLTNFMTSGHASKKIVG 332
Q+++ F+ G+ + G
Sbjct: 532 ----QQRSIIGFLQPGNQTLSATG 551
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 43/69 (62%), Positives = 53/69 (76%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR AMPGFIA++LCP+LI VP +F KY S +++F YDPNFMA SLDEAYL
Sbjct: 150 ARKFGVRGAMPGFIAKRLCPQLIIVPPNFDKYRAVSSEVKEIFADYDPNFMALSLDEAYL 209
Query: 68 DITEVCRER 76
+IT+ ER
Sbjct: 210 NITKHLEER 218
>gi|58261176|ref|XP_567998.1| hypothetical protein [Cryptococcus neoformans var. neoformans
JEC21]
gi|57230080|gb|AAW46481.1| conserved hypothetical protein [Cryptococcus neoformans var.
neoformans JEC21]
Length = 658
Score = 213 bits (543), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 122/298 (40%), Positives = 168/298 (56%), Gaps = 10/298 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR+AM GFIA+KLCP +I F YT S ++V +YD N M ASLDE YL
Sbjct: 260 ARKFGVRSAMAGFIAKKLCPHIILTDLHFDLYTKASKAVKEVLVQYDENLMMASLDEGYL 319
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
+IT ++ E+ E+R V E+ LT SAG+A NR+LAK+CSD NKPNG F L
Sbjct: 320 NITPYMSTHNMTASEVVTEIRAQVEEKTSLTISAGIAANRMLAKICSDKNKPNGHFELAF 379
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
DR ++ F+ LP+R I G G+VTE L + GI TC ++ +K L +
Sbjct: 380 DRATIVRFMRDLPVRNIPGFGRVTERCL-EGLGIQTCGDIYEKRVDLLLMDHWFGFRGLC 438
Query: 188 SVGLGLGSTNTPQARF--RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
LG+ R R+S+ ERTF D + L +I E L D+ + G+
Sbjct: 439 RAYLGIADNTVAPGRREERRSVGVERTFRDKTDDEDIMATLIDIVEELGKDLDRLQYAGK 498
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQFNE 303
T+T+K K TRA ++ KYISS+ DIL A LLK ELP+ +RL+G+R++ +
Sbjct: 499 TVTVKYK-------TRAKSIPKYISSATDILPIAQELLKKELPLRIRLLGVRLSTLKD 549
>gi|321257026|ref|XP_003193442.1| hypothetical protein CGB_D2570C [Cryptococcus gattii WM276]
gi|317459912|gb|ADV21655.1| conserved hypothetical protein [Cryptococcus gattii WM276]
Length = 559
Score = 213 bits (543), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 123/298 (41%), Positives = 168/298 (56%), Gaps = 10/298 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR+AM FIA+KLCP +I F YT S ++V +YD N M ASLDE YL
Sbjct: 161 ARKFGVRSAMASFIAKKLCPHIILTDLHFDLYTEASKAVKEVLVQYDENLMMASLDEGYL 220
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
+IT ++ E+ ++R V E+ LT SAG+A NR+LAK+CSD NKPNGQF L
Sbjct: 221 NITPYMSAHNMTASEVVTQIRAQVEEKTSLTISAGIAANRMLAKICSDKNKPNGQFELAF 280
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
DR ++ F+ LP+RKI G G+VTE L + I TC ++ +K L +
Sbjct: 281 DRATIVRFMRDLPVRKIPGFGRVTERCL-EGLEIETCGDIYEKRMDLLLMDHWFGFRGLC 339
Query: 188 SVGLGLGSTNTPQARF--RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
LG+ R RKS+ ERTF D + L EI E L D+ + G+
Sbjct: 340 RAYLGIADNTVAPGRREERKSVGVERTFRDKTDDEEIMATLIEIVEELGKDLDRLQFAGK 399
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQFNE 303
T+T+K K TRA ++ KYISS+ DIL A LLK ELP+ +RL+G+R++ +
Sbjct: 400 TITIKYK-------TRAKSISKYISSTRDILPVAQELLKKELPLRIRLLGVRLSTLKD 450
>gi|119178590|ref|XP_001240956.1| hypothetical protein CIMG_08119 [Coccidioides immitis RS]
gi|392867079|gb|EAS29729.2| DNA-directed polymerase kappa [Coccidioides immitis RS]
Length = 609
Score = 213 bits (543), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 121/300 (40%), Positives = 177/300 (59%), Gaps = 7/300 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++G R+ M F+A+KLCP+LI +P ++ KYT + R + YDP F +AS+DEAYL
Sbjct: 150 ARKYGCRSGMASFVAKKLCPQLICLPQNYAKYTAKAKEIRAILANYDPQFESASIDEAYL 209
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
+ITE C + E ++LR + E +T SAG+A N +AK+ S+ NKPNGQF +P+
Sbjct: 210 NITEYCLTNNMEPQEAVQKLRNEIAVETKITVSAGIAANAKIAKIASNWNKPNGQFYVPS 269
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
DR A+M F++ +P+RK+ G+G+V E L V GI C ++ +L +F F +
Sbjct: 270 DRAAIMEFMAKIPVRKVNGVGRVFERELEAV-GIKMCSDIYSLRGMLATLFGQKAFQFLM 328
Query: 188 SVGLGLGSTNTPQA--RFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
LGLG T+ A R RKS+ +ERTF E A L KL A L D++ +GR
Sbjct: 329 QCYLGLGRTDIAPAEERQRKSVGTERTFRDLEGFASLQDKLKSTAIELERDLRVAEFKGR 388
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL---KAELP-VSLRLIGLRVTQF 301
TL LK+K +FE+ +R V K + ++D+ K+A LL E P + +RL+GLR T
Sbjct: 389 TLVLKIKLHTFEIISRQVVTPKPVYLADDLYKYALPLLTKINKETPNLKIRLMGLRCTNL 448
>gi|56160426|gb|AAV80827.1| polymerase kappa isoform 1 [Homo sapiens]
Length = 780
Score = 213 bits (543), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 116/258 (44%), Positives = 168/258 (65%), Gaps = 12/258 (4%)
Query: 77 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 135
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 197 GTSAQEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 255
Query: 136 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 195
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 256 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGS 314
Query: 196 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 255
T+ + RKS+S ERTFS Y E+ L+ D+QKE L+GRT+T+KLK +
Sbjct: 315 THLTRDGERKSMSVERTFSEINKAEEQYSLCQELCSELAQDLQKERLKGRTVTIKLKNVN 374
Query: 256 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVRAP 309
FEV+TRA T+ +S++E+I A LLK E+ P+ LRL+G+R++ F ++ R
Sbjct: 375 FEVKTRASTVSSVVSTAEEIFAIAKELLKTEIDADFPHPLRLRLMGVRISSFPNEEDRKH 434
Query: 310 SDPTQKTLTNFMTSGHAS 327
Q+++ F+ +G+ +
Sbjct: 435 Q---QRSIIGFLQAGNQA 449
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/69 (63%), Positives = 53/69 (76%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFGVRAAMPGFIA++LCP+LI VP +F KY S +++ YDPNFMA SLDEAYL
Sbjct: 53 ARRFGVRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYL 112
Query: 68 DITEVCRER 76
+IT+ ER
Sbjct: 113 NITKHLEER 121
>gi|426384400|ref|XP_004058757.1| PREDICTED: DNA polymerase kappa isoform 2 [Gorilla gorilla gorilla]
Length = 781
Score = 213 bits (542), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 116/258 (44%), Positives = 168/258 (65%), Gaps = 12/258 (4%)
Query: 77 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 135
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 197 GTSAQEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 255
Query: 136 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 195
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 256 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGS 314
Query: 196 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 255
T+ + RKS+S ERTFS Y E+ L+ D+QKE L+GRT+T+KLK +
Sbjct: 315 THLTRDGERKSMSVERTFSEINKAEEQYSLCQELCSELAQDLQKERLKGRTVTIKLKNVN 374
Query: 256 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVRAP 309
FEV+TRA T+ +S++E+I A LLK E+ P+ LRL+G+R++ F ++ R
Sbjct: 375 FEVKTRASTVSSVVSTAEEIFAIAKELLKTEIDADFPHPLRLRLMGVRISSFPNEEDRKH 434
Query: 310 SDPTQKTLTNFMTSGHAS 327
Q+++ F+ +G+ +
Sbjct: 435 Q---QRSIIGFLQAGNQA 449
Score = 101 bits (252), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 45/69 (65%), Positives = 53/69 (76%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFGVRAAMPGFIAR+LCP+LI VP +F KY S +++ YDPNFMA SLDEAYL
Sbjct: 53 ARRFGVRAAMPGFIARRLCPQLIIVPPNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYL 112
Query: 68 DITEVCRER 76
+IT+ ER
Sbjct: 113 NITKHLEER 121
>gi|62088162|dbj|BAD92528.1| polymerase (DNA directed) kappa variant [Homo sapiens]
Length = 790
Score = 213 bits (542), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 116/258 (44%), Positives = 168/258 (65%), Gaps = 12/258 (4%)
Query: 77 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 135
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 207 GTSAQEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 265
Query: 136 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 195
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 266 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGS 324
Query: 196 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 255
T+ + RKS+S ERTFS Y E+ L+ D+QKE L+GRT+T+KLK +
Sbjct: 325 THLTRDGERKSMSVERTFSEINKAEEQYSLCQELCSELAQDLQKERLKGRTVTIKLKNVN 384
Query: 256 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVRAP 309
FEV+TRA T+ +S++E+I A LLK E+ P+ LRL+G+R++ F ++ R
Sbjct: 385 FEVKTRASTVSSVVSTAEEIFAIAKELLKTEIDADFPHPLRLRLMGVRISSFPNEEDRKH 444
Query: 310 SDPTQKTLTNFMTSGHAS 327
Q+++ F+ +G+ +
Sbjct: 445 Q---QRSIIGFLQAGNQA 459
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/69 (63%), Positives = 53/69 (76%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFGVRAAMPGFIA++LCP+LI VP +F KY S +++ YDPNFMA SLDEAYL
Sbjct: 63 ARRFGVRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYL 122
Query: 68 DITEVCRER 76
+IT+ ER
Sbjct: 123 NITKHLEER 131
>gi|149726533|ref|XP_001504725.1| PREDICTED: DNA polymerase kappa [Equus caballus]
Length = 860
Score = 213 bits (542), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 118/263 (44%), Positives = 168/263 (63%), Gaps = 12/263 (4%)
Query: 77 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 136
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ + DR AVM FI
Sbjct: 286 GTSAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPDRQAVMDFI 345
Query: 137 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 196
LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ FL V +GLGST
Sbjct: 346 KDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHQFLHVSMGLGST 404
Query: 197 NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 256
+ + RKS S ERTFS Y E+ L+ D+QKEGL+GRT+T+KLK +F
Sbjct: 405 HLARDGERKSRSVERTFSEMSKAEEQYSLCQELCGELAQDLQKEGLKGRTVTIKLKNVNF 464
Query: 257 EVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQF-NEDKVRAP 309
EV+TRA T+ IS++E+I A LL+ E+ P+ LRL+G+RV+ F NE++ +
Sbjct: 465 EVKTRASTVSSVISTAEEIFAIAKELLRTEIDADFPHPLRLRLMGVRVSGFPNEEEKKH- 523
Query: 310 SDPTQKTLTNFMTSGHASKKIVG 332
Q+++ F+ +G+ + G
Sbjct: 524 ---QQRSIIGFLQAGNQTPSATG 543
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 42/69 (60%), Positives = 54/69 (78%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFGVRAAMPGFIA++LCP+L+ VP +F KY S +++ YDPNF+A SLDEAYL
Sbjct: 143 ARRFGVRAAMPGFIAKRLCPQLLIVPPNFDKYRAVSREVKEILADYDPNFLAMSLDEAYL 202
Query: 68 DITEVCRER 76
+IT+ +ER
Sbjct: 203 NITKHLQER 211
>gi|148668569|gb|EDL00888.1| polymerase (DNA directed), kappa, isoform CRA_a [Mus musculus]
gi|148668570|gb|EDL00889.1| polymerase (DNA directed), kappa, isoform CRA_a [Mus musculus]
Length = 852
Score = 213 bits (542), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 116/263 (44%), Positives = 167/263 (63%), Gaps = 10/263 (3%)
Query: 77 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 136
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ + R AVM FI
Sbjct: 286 GTSAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPSRSAVMDFI 345
Query: 137 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 196
LPIRK+ GIGKVTE +L GI TC E+ Q+ +LL +FS ++ +FL + LGLGST
Sbjct: 346 KDLPIRKVSGIGKVTEKMLM-ALGIVTCTELYQQRALLSLLFSETSWHYFLHIALGLGST 404
Query: 197 NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 256
+ + RKS+S ERTFS Y E+ L+ D+QKEGL+GRT+T+KLK +F
Sbjct: 405 DLARDGERKSMSVERTFSEISKTEEQYSLCQELCAELAHDLQKEGLKGRTVTIKLKNVNF 464
Query: 257 EVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVRAPS 310
EV+TRA T+ IS++E+I A LL+ E+ P+ LRL+G+R++ F+ + R
Sbjct: 465 EVKTRASTVPAAISTAEEIFAIAKELLRTEVNVGSPHPLRLRLMGVRMSTFSSEDDRKHQ 524
Query: 311 DPTQKTLTNFMTSGHASKKIVGD 333
Q+++ F+ +G+ + GD
Sbjct: 525 ---QRSIIGFLQAGNQALSSTGD 544
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 44/69 (63%), Positives = 55/69 (79%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFGVRAAMPGFIA++LCP+LI VP +F KY S +++ +YDPNFMA SLDEAYL
Sbjct: 142 ARRFGVRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILAEYDPNFMAMSLDEAYL 201
Query: 68 DITEVCRER 76
+IT+ +ER
Sbjct: 202 NITQHLQER 210
>gi|6753636|ref|NP_036178.1| DNA polymerase kappa [Mus musculus]
gi|59798433|sp|Q9QUG2.1|POLK_MOUSE RecName: Full=DNA polymerase kappa; AltName: Full=DINB protein;
Short=DINP
gi|6049288|gb|AAF02541.1|AF163571_1 DINB protein [Mus musculus]
gi|6463734|dbj|BAA86942.1| DINB1 [Mus musculus]
gi|14279087|dbj|BAB59059.1| DNA polymerase kappa [Mus musculus]
Length = 852
Score = 213 bits (542), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 116/263 (44%), Positives = 167/263 (63%), Gaps = 10/263 (3%)
Query: 77 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 136
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ + R AVM FI
Sbjct: 286 GTSAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPSRSAVMDFI 345
Query: 137 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 196
LPIRK+ GIGKVTE +L GI TC E+ Q+ +LL +FS ++ +FL + LGLGST
Sbjct: 346 KDLPIRKVSGIGKVTEKMLM-ALGIVTCTELYQQRALLSLLFSETSWHYFLHIALGLGST 404
Query: 197 NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 256
+ + RKS+S ERTFS Y E+ L+ D+QKEGL+GRT+T+KLK +F
Sbjct: 405 DLARDGERKSMSVERTFSEISKTEEQYSLCQELCAELAHDLQKEGLKGRTVTIKLKNVNF 464
Query: 257 EVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVRAPS 310
EV+TRA T+ IS++E+I A LL+ E+ P+ LRL+G+R++ F+ + R
Sbjct: 465 EVKTRASTVPAAISTAEEIFAIAKELLRTEVNVGSPHPLRLRLMGVRMSTFSSEDDRKHQ 524
Query: 311 DPTQKTLTNFMTSGHASKKIVGD 333
Q+++ F+ +G+ + GD
Sbjct: 525 ---QRSIIGFLQAGNQALSSTGD 544
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 44/69 (63%), Positives = 55/69 (79%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFGVRAAMPGFIA++LCP+LI VP +F KY S +++ +YDPNFMA SLDEAYL
Sbjct: 142 ARRFGVRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILAEYDPNFMAMSLDEAYL 201
Query: 68 DITEVCRER 76
+IT+ +ER
Sbjct: 202 NITQHLQER 210
>gi|291413624|ref|XP_002723070.1| PREDICTED: DNA-directed DNA polymerase kappa, partial [Oryctolagus
cuniculus]
Length = 774
Score = 213 bits (541), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 120/258 (46%), Positives = 168/258 (65%), Gaps = 16/258 (6%)
Query: 77 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 135
G S E+ +E+R + ++ LT SAG+APN +LAK+CSD NKPNGQ+ V+PN R AVM F
Sbjct: 198 GTSAEEVVKEIRFRIKQKTTLTASAGIAPNTMLAKICSDKNKPNGQYQVIPN-RQAVMNF 256
Query: 136 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 195
I LPIRK+ GIGKVTE +L+ G+ TC E+ Q+ +LL +FS ++ +FL V LGLGS
Sbjct: 257 IKDLPIRKVSGIGKVTEKMLK-ALGVVTCTELYQQRALLSLLFSETSWHYFLHVSLGLGS 315
Query: 196 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 255
T+ + RKS+S ERTFS Y E+ L+ D+QKEGL+GRT+T+KLK
Sbjct: 316 THLARDGERKSMSIERTFSELSKAEEQYSLCQELCRDLAQDLQKEGLKGRTVTVKLKNVD 375
Query: 256 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQF--NEDKVR 307
FEV+TRA T+ +S+SE+I A LL+ E+ P+ LRL+G+RV+ F EDK +
Sbjct: 376 FEVKTRASTVPCLVSTSEEIFAVAKELLRTEIDADFPHPLRLRLMGVRVSGFPNEEDKKQ 435
Query: 308 APSDPTQKTLTNFMTSGH 325
QK++ F+ +G+
Sbjct: 436 -----QQKSIVGFLQTGN 448
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 43/69 (62%), Positives = 53/69 (76%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFGVRAAMPGFIA++LCP+LI VP +F KY S +++ YDP+FMA SLDEAYL
Sbjct: 58 ARRFGVRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSQEVKEILADYDPDFMAMSLDEAYL 117
Query: 68 DITEVCRER 76
+IT+ ER
Sbjct: 118 NITKHLEER 126
>gi|348544851|ref|XP_003459894.1| PREDICTED: DNA polymerase kappa-like [Oreochromis niloticus]
Length = 875
Score = 211 bits (538), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 121/259 (46%), Positives = 170/259 (65%), Gaps = 20/259 (7%)
Query: 77 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 136
G S E E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ LP+ R AVM FI
Sbjct: 278 GTSVEEAVREMRFRIEQKTMLTASAGIAPNMMLAKVCSDKNKPNGQYRLPSTREAVMDFI 337
Query: 137 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 196
+LP+RK+ GIGKV+E +L + GI+TC + Q+ +LL +FS + FL V LGLGST
Sbjct: 338 HNLPVRKVCGIGKVSEKML-NALGISTCSHLGQQMALLSLLFSETAWHHFLEVSLGLGST 396
Query: 197 NTPQARFRKSISSERTF---SVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 253
P+ RKS+S+ERTF S E++ L R E+ E L+ DM+KEGL+G+T+TLKLK
Sbjct: 397 YIPRHEERKSMSTERTFKELSKVEEQLSLCR---ELCEDLAEDMKKEGLKGKTVTLKLKN 453
Query: 254 ASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFN--EDK 305
+FEV+TRA+TL +++ ++I A LLK E+ P+ LRL+G+R++ F +DK
Sbjct: 454 VNFEVKTRAMTLPCAVATVDEIFAVAKDLLKTEIENESPQPLRLRLMGVRISAFASLDDK 513
Query: 306 VRAPSDPTQKTLTNFMTSG 324
P QK++ F+ SG
Sbjct: 514 -----KPLQKSIIGFLQSG 527
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/69 (59%), Positives = 51/69 (73%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++GVRAAMPGFIA+KLCP L+ VP +F KY S+ R++F YDPNF SLDEAYL
Sbjct: 141 ARKYGVRAAMPGFIAKKLCPSLVIVPLNFDKYRAVSNEIREIFADYDPNFQPLSLDEAYL 200
Query: 68 DITEVCRER 76
D T+ +R
Sbjct: 201 DFTDHLEQR 209
>gi|395825506|ref|XP_003785969.1| PREDICTED: DNA polymerase kappa [Otolemur garnettii]
Length = 876
Score = 211 bits (537), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 116/260 (44%), Positives = 168/260 (64%), Gaps = 16/260 (6%)
Query: 77 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 135
G S E+ +E+R + ++ LT SAG+APN +LAK+CSD +KPNGQ+ +LPN R AVM F
Sbjct: 294 GTSAEEVVKEIRFRIEQKTKLTASAGIAPNTMLAKICSDKHKPNGQYQILPN-REAVMDF 352
Query: 136 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 195
I LPIRK+ G+GKVTE +L+ GI TC E+ Q+ +LL +F ++ +FL + LGLGS
Sbjct: 353 IKDLPIRKVSGVGKVTEKMLK-ALGIITCTELYQQRALLSLLFPETSWHYFLHISLGLGS 411
Query: 196 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 255
T + RKS+S ERTFS Y E+ L+ D+QKEGL+GRT+T+KLK +
Sbjct: 412 TYLARDGERKSMSVERTFSEINKAEEQYSLCQELCSELAQDLQKEGLKGRTVTIKLKNVN 471
Query: 256 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQF--NEDKVR 307
FEV+TRA T+ +S++E+I A LL+ E+ P+ LRL+G+R++ F EDK +
Sbjct: 472 FEVKTRASTVSSVVSTAEEIFAIAKELLRTEIDADFPHPLRLRLMGVRISSFPNEEDKKQ 531
Query: 308 APSDPTQKTLTNFMTSGHAS 327
QK++ F+ +G+ S
Sbjct: 532 Q-----QKSIIGFLQAGNQS 546
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 44/69 (63%), Positives = 54/69 (78%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFGVRAAMPGFIA++LCP+LI VP +F KY S +++ YDPNFMA SLDEAYL
Sbjct: 143 ARRFGVRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILADYDPNFMATSLDEAYL 202
Query: 68 DITEVCRER 76
+IT+ +ER
Sbjct: 203 NITKHLQER 211
>gi|60686906|gb|AAX35542.1| DNA polymerase kappa [Xenopus laevis]
Length = 862
Score = 211 bits (537), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 124/295 (42%), Positives = 183/295 (62%), Gaps = 21/295 (7%)
Query: 46 TRKVFCKYDPNFMA-ASLDEAYLDITEVCRER--------GISGIEIAEELRTSVYEEAG 96
T + + P+F+A ++ + D TE R G S E +E+R + ++
Sbjct: 245 TSPILFEDSPSFVADQNVSQPGQDTTEEIRRPSLEKAVVFGTSVEEAVKEMRFRIEQKTT 304
Query: 97 LTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILR 156
LT SAG+APN +LAKVCSD NKPNGQ+ + NDR A+ FI LPIRK+ GIGKVTE +L+
Sbjct: 305 LTASAGIAPNTMLAKVCSDKNKPNGQYRIANDRQAIKDFIKDLPIRKVPGIGKVTEKMLK 364
Query: 157 DVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVT 216
+ TC ++ Q+ +LL +FS ++ F+ + LGLGST+ + RKS+S+ERTFS
Sbjct: 365 -ALEVVTCTDLYQQRALLSLLFSETSWQNFVHISLGLGSTHVERDGERKSMSTERTFSEM 423
Query: 217 EDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDIL 276
Y E+ LS D+QKEGL+G+T+T+KLK +FEVRTRA+T+ +S+ E+I
Sbjct: 424 SSAEEQYGLCQELCRDLSKDLQKEGLKGKTVTIKLKNVTFEVRTRALTVTSPVSTEEEIF 483
Query: 277 KHASVLLKAEL------PVSLRLIGLRVTQF-NEDKVRAPSDPTQKTLTNFMTSG 324
A +LKAE+ P+ LRL+G+RV+ F NE++ + QK++T+F+ SG
Sbjct: 484 AVAKEILKAEIDLASPEPLQLRLMGVRVSGFLNEEEKKH----HQKSITSFLHSG 534
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 44/69 (63%), Positives = 51/69 (73%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFGVRAAMPGFIA+KLCP LI VP +F KY S R++ +YDPNF+ SLDEAYL
Sbjct: 144 ARRFGVRAAMPGFIAKKLCPALIIVPPNFDKYRAVSSEVREILAQYDPNFLPMSLDEAYL 203
Query: 68 DITEVCRER 76
D T+ ER
Sbjct: 204 DFTDHLSER 212
>gi|148234382|ref|NP_001086552.1| DNA-directed DNA polymerase kappa [Xenopus laevis]
gi|49899074|gb|AAH76794.1| Polk-prov protein [Xenopus laevis]
Length = 862
Score = 211 bits (537), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 124/295 (42%), Positives = 183/295 (62%), Gaps = 21/295 (7%)
Query: 46 TRKVFCKYDPNFMA-ASLDEAYLDITEVCRER--------GISGIEIAEELRTSVYEEAG 96
T + + P+F+A ++ + D TE R G S E +E+R + ++
Sbjct: 245 TSPILFEDSPSFVADQNVSQPGQDTTEEIRRPSLEKAVVFGTSVEEAVKEMRFRIEQKTT 304
Query: 97 LTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILR 156
LT SAG+APN +LAKVCSD NKPNGQ+ + NDR A+ FI LPIRK+ GIGKVTE +L+
Sbjct: 305 LTASAGIAPNMMLAKVCSDKNKPNGQYRIANDRQAIKDFIKDLPIRKVPGIGKVTEKMLK 364
Query: 157 DVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVT 216
+ TC ++ Q+ +LL +FS ++ F+ + LGLGST+ + RKS+S+ERTFS
Sbjct: 365 -ALEVVTCTDLYQQRALLSLLFSETSWQNFVHISLGLGSTHVERDGERKSMSTERTFSEM 423
Query: 217 EDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDIL 276
Y E+ LS D+QKEGL+G+T+T+KLK +FEVRTRA+T+ +S+ E+I
Sbjct: 424 SSAEEQYGLCQELCRDLSKDLQKEGLKGKTVTIKLKNVTFEVRTRALTVTSPVSTEEEIF 483
Query: 277 KHASVLLKAEL------PVSLRLIGLRVTQF-NEDKVRAPSDPTQKTLTNFMTSG 324
A +LKAE+ P+ LRL+G+RV+ F NE++ + QK++T+F+ SG
Sbjct: 484 AVAKEILKAEIDLASPEPLQLRLMGVRVSGFLNEEEKKH----HQKSITSFLHSG 534
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 44/69 (63%), Positives = 51/69 (73%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFGVRAAMPGFIA+KLCP LI VP +F KY S R++ +YDPNF+ SLDEAYL
Sbjct: 144 ARRFGVRAAMPGFIAKKLCPALIIVPPNFDKYRAVSSEVREILAQYDPNFLPMSLDEAYL 203
Query: 68 DITEVCRER 76
D T+ ER
Sbjct: 204 DFTDHLSER 212
>gi|355712668|gb|AES04426.1| polymerase kappa [Mustela putorius furo]
Length = 878
Score = 211 bits (536), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 116/265 (43%), Positives = 166/265 (62%), Gaps = 14/265 (5%)
Query: 77 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 136
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ + R AVM FI
Sbjct: 296 GTSAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPSRQAVMDFI 355
Query: 137 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 196
LPIRK+ GIGKVTE +L+ GI C E+ Q+ +LL +FS ++ FL + LGLGST
Sbjct: 356 KDLPIRKVSGIGKVTEKMLK-ALGIINCTELYQQRALLSLLFSETSWHHFLHISLGLGST 414
Query: 197 NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 256
+ + RKS+S ERTF+ Y E+ L+ D+QKEGL+GRT+T+KLK +F
Sbjct: 415 HLTRDGERKSMSVERTFNEISKAEEQYSLCRELCSELAQDLQKEGLKGRTVTIKLKNVNF 474
Query: 257 EVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQF--NEDKVRA 308
EV+TRA T+ +S++E+I A LL+ E+ P+ LRL+G+R++ F EDK
Sbjct: 475 EVKTRASTVSSVVSTAEEIFAIAKELLRTEIDADFPHPLRLRLMGVRLSSFPSEEDKKHQ 534
Query: 309 PSDPTQKTLTNFMTSGHASKKIVGD 333
Q+T+ F+ +G+ + GD
Sbjct: 535 -----QRTIIGFLQAGNPTLSAPGD 554
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 44/69 (63%), Positives = 54/69 (78%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFGVRAAMPGFIA++LCP+LI VP +F KY S +++ YDPNFMA SLDEAYL
Sbjct: 152 ARRFGVRAAMPGFIAKRLCPQLIIVPPNFDKYKAVSTEVKEILADYDPNFMAMSLDEAYL 211
Query: 68 DITEVCRER 76
+IT+ +ER
Sbjct: 212 NITKHLQER 220
>gi|73952201|ref|XP_536321.2| PREDICTED: DNA polymerase kappa isoform 2 [Canis lupus familiaris]
Length = 861
Score = 210 bits (535), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 121/264 (45%), Positives = 171/264 (64%), Gaps = 14/264 (5%)
Query: 77 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 135
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ VLPN R AVM F
Sbjct: 287 GTSAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQVLPN-RQAVMDF 345
Query: 136 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 195
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ FL + LGLGS
Sbjct: 346 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHHFLHISLGLGS 404
Query: 196 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 255
T+ + RKS+S ERTFS Y E+ L+ D+QKEGL+GRT+T+KLK +
Sbjct: 405 THLARDGERKSMSVERTFSEISKAEEQYNLCQELCSELAQDLQKEGLKGRTVTIKLKNVN 464
Query: 256 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQF-NEDKVRA 308
FEV+TRA T+ +S++E+I A LL+ E+ P+ LRL+G+R++ F NE+ R
Sbjct: 465 FEVKTRASTVSSVVSTTEEIFAIAKELLRTEIDADFPHPLRLRLMGVRLSSFPNEEDKRH 524
Query: 309 PSDPTQKTLTNFMTSGHASKKIVG 332
Q+++ F+ +G+ S+ G
Sbjct: 525 ----QQRSIIGFLQAGNQSQSAPG 544
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 43/69 (62%), Positives = 54/69 (78%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFGVRAAMPGFIA++LCP+LI VP +F KY S +++ YDPNF+A SLDEAYL
Sbjct: 143 ARRFGVRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSTEVKEILADYDPNFLAMSLDEAYL 202
Query: 68 DITEVCRER 76
+IT+ +ER
Sbjct: 203 NITKHLQER 211
>gi|344272661|ref|XP_003408150.1| PREDICTED: DNA polymerase kappa [Loxodonta africana]
Length = 864
Score = 210 bits (535), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 112/237 (47%), Positives = 157/237 (66%), Gaps = 9/237 (3%)
Query: 77 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 136
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ + +R AVM FI
Sbjct: 287 GTSAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQIHPNRQAVMDFI 346
Query: 137 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 196
LPIRKI GIG+VTE +L+ GI TC E+ Q+ +LL +FS ++ +FL V LGLGST
Sbjct: 347 KDLPIRKISGIGQVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHVSLGLGST 405
Query: 197 NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 256
+ + RKS+S ERTFS Y E+ L+ D+QK+GL+GRT+T+KLK +F
Sbjct: 406 HLERDGERKSMSVERTFSEISKAEEQYSLCQELCSELAQDLQKKGLKGRTVTIKLKNVNF 465
Query: 257 EVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQF--NEDK 305
EV+TRA T+ +S++E+I A LL+ E+ P+ LRL+G+R++ F EDK
Sbjct: 466 EVKTRASTVSSVVSTAEEIFAIAKELLRTEVDADFPHPLRLRLMGVRISSFANEEDK 522
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 44/69 (63%), Positives = 54/69 (78%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVRAAMPGFIA++LCP+LI VP +F KY S +++ YDPNFMA SLDEAYL
Sbjct: 143 ARKFGVRAAMPGFIAKRLCPQLIIVPPNFDKYQAVSKEVKEILADYDPNFMAMSLDEAYL 202
Query: 68 DITEVCRER 76
+ITE +ER
Sbjct: 203 NITEHLQER 211
>gi|410948820|ref|XP_003981127.1| PREDICTED: DNA polymerase kappa [Felis catus]
Length = 863
Score = 210 bits (534), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 122/299 (40%), Positives = 181/299 (60%), Gaps = 15/299 (5%)
Query: 42 YSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSA 101
++D+ + + +P F A S ++ I + G S E +E+R + ++ LT SA
Sbjct: 253 FNDIPPDLHPQGNP-FQANSEEQNNPQILQNAIVFGTSAEEAVKEIRFRIEQKTTLTASA 311
Query: 102 GVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGI 161
G+APN +LAKVCSD NKPNGQ+ + DR AVM FI LPIRK+ GIGKVTE +L+ G+
Sbjct: 312 GIAPNTMLAKVCSDKNKPNGQYQILPDREAVMDFIKDLPIRKVSGIGKVTEKMLK-ALGV 370
Query: 162 NTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL 221
TC E+ Q+ +LL +FS ++ FL + LGLGST + RKS+S ERTFS
Sbjct: 371 ITCTELYQQRALLSLLFSETSWHHFLHISLGLGSTLLARDGDRKSMSVERTFSEMSKAEE 430
Query: 222 LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASV 281
Y E+ L+ D+QKEGL+GRT+T+KLK +FEV+TRA T+ +S++E+I A
Sbjct: 431 QYSLCQELCSELAQDLQKEGLKGRTVTIKLKNVNFEVKTRASTVSSVVSTAEEIFAIAKD 490
Query: 282 LLKAEL------PVSLRLIGLRVTQF--NEDKVRAPSDPTQKTLTNFMTSGHASKKIVG 332
LL+ E+ P+ LRL+G+R++ F EDK + Q+++ F+ +G+ + G
Sbjct: 491 LLRTEIDADFPHPLRLRLMGVRLSSFPNEEDKKQQ-----QRSIIGFLQAGNQALSATG 544
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 43/69 (62%), Positives = 53/69 (76%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFGVRAAMPGFIA++LCP+L VP +F KY S +++ YDPNFMA SLDEAYL
Sbjct: 143 ARRFGVRAAMPGFIAKRLCPQLTIVPPNFDKYQAVSREVKEILADYDPNFMAMSLDEAYL 202
Query: 68 DITEVCRER 76
+IT+ +ER
Sbjct: 203 NITKHLQER 211
>gi|348551130|ref|XP_003461383.1| PREDICTED: DNA polymerase kappa-like [Cavia porcellus]
Length = 853
Score = 210 bits (534), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 113/262 (43%), Positives = 165/262 (62%), Gaps = 10/262 (3%)
Query: 77 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 136
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ + R AVM FI
Sbjct: 287 GTSAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPSRQAVMEFI 346
Query: 137 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 196
LPIRKI GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGST
Sbjct: 347 KDLPIRKISGIGKVTEKMLK-ALGIITCAELYQQRALLSLLFSETSWHYFLHISLGLGST 405
Query: 197 NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 256
+ + RKS+S ERTF+ Y E+ ++ D+QKEGL+GRT+T+KLK +F
Sbjct: 406 HLARDGERKSMSVERTFNEINKAEDQYSLCQELCSEIAQDLQKEGLKGRTVTVKLKNVNF 465
Query: 257 EVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVRAPS 310
EV+TRA T+ +S+ E+I A LL+ E+ P+ LRL+G+R++ F + A
Sbjct: 466 EVKTRASTVSSVVSTEEEIFAIAKELLRTEIDAASPYPLRLRLMGVRISSFPSE---ADK 522
Query: 311 DPTQKTLTNFMTSGHASKKIVG 332
Q+++ F+ +G+ + G
Sbjct: 523 KHQQRSIIGFLQAGNQALSAPG 544
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/36 (72%), Positives = 29/36 (80%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYS 43
ARRFGVRAAMPGFIA++LCP LI VP +F KY S
Sbjct: 143 ARRFGVRAAMPGFIAKRLCPHLIIVPLNFDKYRVVS 178
>gi|31127116|gb|AAH52820.1| Polk protein [Mus musculus]
Length = 739
Score = 210 bits (534), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 115/262 (43%), Positives = 166/262 (63%), Gaps = 10/262 (3%)
Query: 77 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 136
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ + R AVM FI
Sbjct: 150 GTSAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPSRSAVMDFI 209
Query: 137 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 196
LPIRK+ GIGKVTE +L GI TC E+ Q+ +LL +FS ++ +FL + LGLGST
Sbjct: 210 KDLPIRKVSGIGKVTEKMLM-ALGIVTCTELYQQRALLSLLFSETSWHYFLHIALGLGST 268
Query: 197 NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 256
+ + RKS+S ERTFS Y E+ L+ D+QKEGL+GRT+T+KLK +F
Sbjct: 269 DLARDGERKSMSVERTFSEISKTEEQYSLCQELCAELAHDLQKEGLKGRTVTIKLKNVNF 328
Query: 257 EVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVRAPS 310
EV+TRA T+ IS++E+I A LL+ E+ P+ LRL+G+R++ F+ + R
Sbjct: 329 EVKTRASTVPAAISTAEEIFAIAKELLRTEVNVGSPHPLRLRLMGVRMSTFSSEDDRKHQ 388
Query: 311 DPTQKTLTNFMTSGHASKKIVG 332
Q+++ F+ +G+ + G
Sbjct: 389 ---QRSIIGFLQAGNQALSSTG 407
Score = 44.7 bits (104), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/27 (70%), Positives = 23/27 (85%)
Query: 50 FCKYDPNFMAASLDEAYLDITEVCRER 76
F +YDPNFMA SLDEAYL+IT+ +ER
Sbjct: 48 FYEYDPNFMAMSLDEAYLNITQHLQER 74
>gi|156121161|ref|NP_001095728.1| DNA polymerase kappa [Bos taurus]
gi|151555691|gb|AAI49025.1| POLK protein [Bos taurus]
gi|296483771|tpg|DAA25886.1| TPA: DNA-directed DNA polymerase kappa [Bos taurus]
Length = 877
Score = 209 bits (533), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 117/264 (44%), Positives = 170/264 (64%), Gaps = 14/264 (5%)
Query: 77 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 135
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 294 GTSAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 352
Query: 136 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 195
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ FL + LGLGS
Sbjct: 353 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHHFLHISLGLGS 411
Query: 196 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 255
T+ + RKS+S ERTFS Y E+ L+ D+QK+GL+GRT+T+KLK +
Sbjct: 412 THLARDGERKSMSVERTFSEISKAEEQYSLCQELCSELAQDLQKKGLKGRTVTIKLKNVN 471
Query: 256 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQF-NEDKVRA 308
FEV+TRA T+ +S++E+I A LL+ E+ P+ LRL+G+R++ F NE++ +
Sbjct: 472 FEVKTRASTVSTVVSTAEEIFVIAKELLRTEIDADFPQPLRLRLMGVRLSGFPNEEEKKH 531
Query: 309 PSDPTQKTLTNFMTSGHASKKIVG 332
Q+++ F+ G+ + G
Sbjct: 532 ----QQRSIIGFLQPGNQALSATG 551
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 44/69 (63%), Positives = 53/69 (76%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFGVRAAMPGFIA++LCP+LI VP +F KY S +++ YDPNFMA SLDEAYL
Sbjct: 150 ARRFGVRAAMPGFIAKRLCPQLIIVPPNFDKYQAVSREVKEILTDYDPNFMAMSLDEAYL 209
Query: 68 DITEVCRER 76
+IT+ ER
Sbjct: 210 NITKHLEER 218
>gi|343428792|emb|CBQ72337.1| related to DNA polymerase kappa [Sporisorium reilianum SRZ2]
Length = 654
Score = 209 bits (532), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 124/301 (41%), Positives = 175/301 (58%), Gaps = 9/301 (2%)
Query: 8 ARR-FGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAY 66
ARR +GVR+ M F+A+ LCP LI V D Y S VF +YD N ASLDEAY
Sbjct: 187 ARRGYGVRSGMAVFVAKALCPHLIVVKNDMQSYVQASQKVMAVFEQYDENLAKASLDEAY 246
Query: 67 LDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP 126
LDIT+ + G S ++ ++LR V E LT S G+APN +LAK+ SD NKP+GQF +
Sbjct: 247 LDITDYVEQHGGSIDQVVQQLRDQVRSETQLTVSVGIAPNTMLAKISSDRNKPDGQFRVQ 306
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFF 186
DR A++ F+ LP RKI GIG+V E IL + G++TC E+ K L F ++
Sbjct: 307 PDRKAIVDFMRDLPCRKIPGIGRVNERIL-ESLGVSTCGEIWNKRVELWLAFD-GKIEWL 364
Query: 187 LSVGLGLGSTNT-PQAR-FRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRG 244
+ LG+G+T P R RKS+ E TFS T D L L E A+ + D+++ +G
Sbjct: 365 VKAHLGIGNTVVEPSKREERKSVGREHTFSPTSDTQALLDLLKESAQRVEQDLERLDFKG 424
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL----PVSLRLIGLRVTQ 300
+T+TL K +++ +RA T + + +E++ + S LL E+ +SLRLIG+RVTQ
Sbjct: 425 KTITLVAKRDNYQRFSRARTSTRLVHRAEELYEITSSLLLHEIEREGQLSLRLIGVRVTQ 484
Query: 301 F 301
Sbjct: 485 L 485
>gi|426232466|ref|XP_004010243.1| PREDICTED: DNA polymerase kappa [Ovis aries]
Length = 871
Score = 209 bits (532), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 117/264 (44%), Positives = 170/264 (64%), Gaps = 14/264 (5%)
Query: 77 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 135
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 287 GTSAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 345
Query: 136 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 195
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ FL + LGLGS
Sbjct: 346 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHHFLHISLGLGS 404
Query: 196 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 255
T+ + RKS+S ERTFS Y E+ L+ D+QK+GL+GRT+T+KLK +
Sbjct: 405 THLARDGERKSMSVERTFSEISKAEEQYSLCQELCSELAQDLQKKGLKGRTVTIKLKNVN 464
Query: 256 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQF-NEDKVRA 308
FEV+TRA T+ +S++E+I A LL+ E+ P+ LRL+G+R++ F NE++ +
Sbjct: 465 FEVKTRASTVPAVVSTAEEIFVIAKELLRTEIDADFPHPLRLRLMGVRLSGFPNEEEKKH 524
Query: 309 PSDPTQKTLTNFMTSGHASKKIVG 332
Q+++ F+ G+ + G
Sbjct: 525 ----QQRSIIGFLQPGNQALPATG 544
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 44/69 (63%), Positives = 53/69 (76%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFGVRAAMPGFIA++LCP+LI VP +F KY S +++ YDPNFMA SLDEAYL
Sbjct: 143 ARRFGVRAAMPGFIAKRLCPQLIIVPPNFDKYQAVSREVKEILTDYDPNFMAMSLDEAYL 202
Query: 68 DITEVCRER 76
+IT+ ER
Sbjct: 203 NITKHLEER 211
>gi|52695703|pdb|1T94|A Chain A, Crystal Structure Of The Catalytic Core Of Human Dna
Polymerase Kappa
gi|52695704|pdb|1T94|B Chain B, Crystal Structure Of The Catalytic Core Of Human Dna
Polymerase Kappa
Length = 459
Score = 209 bits (532), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 113/238 (47%), Positives = 158/238 (66%), Gaps = 9/238 (3%)
Query: 77 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 135
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 220 GTSAQEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 278
Query: 136 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 195
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 279 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGS 337
Query: 196 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 255
T+ + RKS+S ERTFS Y E+ L+ D+QKE L+GRT+T+KLK +
Sbjct: 338 THLTRDGERKSMSVERTFSEINKAEEQYSLCQELCSELAQDLQKERLKGRTVTIKLKNVN 397
Query: 256 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVR 307
FEV+TRA T+ +S++E+I A LLK E+ P+ LRL+G+R++ F ++ R
Sbjct: 398 FEVKTRASTVSSVVSTAEEIFAIAKELLKTEIDADFPHPLRLRLMGVRISSFPNEEDR 455
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 44/69 (63%), Positives = 53/69 (76%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFGVRAAMPGFIA++LCP+LI VP +F KY S +++ YDPNFMA SLDEAYL
Sbjct: 76 ARRFGVRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYL 135
Query: 68 DITEVCRER 76
+IT+ ER
Sbjct: 136 NITKHLEER 144
>gi|365812957|pdb|3PZP|A Chain A, Human Dna Polymerase Kappa Extending Opposite A Cis-Syn
Thymine Dimer
gi|365812958|pdb|3PZP|B Chain B, Human Dna Polymerase Kappa Extending Opposite A Cis-Syn
Thymine Dimer
Length = 517
Score = 209 bits (531), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 113/238 (47%), Positives = 158/238 (66%), Gaps = 9/238 (3%)
Query: 77 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 135
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 276 GTSAQEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 334
Query: 136 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 195
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 335 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGS 393
Query: 196 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 255
T+ + RKS+S ERTFS Y E+ L+ D+QKE L+GRT+T+KLK +
Sbjct: 394 THLTRDGERKSMSVERTFSEINKAEEQYSLCQELCSELAQDLQKERLKGRTVTIKLKNVN 453
Query: 256 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVR 307
FEV+TRA T+ +S++E+I A LLK E+ P+ LRL+G+R++ F ++ R
Sbjct: 454 FEVKTRASTVSSVVSTAEEIFAIAKELLKTEIDADFPHPLRLRLMGVRISSFPNEEDR 511
Score = 101 bits (252), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 44/69 (63%), Positives = 53/69 (76%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFGVRAAMPGFIA++LCP+LI VP +F KY S +++ YDPNFMA SLDEAYL
Sbjct: 132 ARRFGVRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYL 191
Query: 68 DITEVCRER 76
+IT+ ER
Sbjct: 192 NITKHLEER 200
>gi|134105174|pdb|2OH2|A Chain A, Ternary Complex Of Human Dna Polymerase
gi|134105175|pdb|2OH2|B Chain B, Ternary Complex Of Human Dna Polymerase
gi|240104255|pdb|2W7O|A Chain A, Structure And Activity Of Bypass Synthesis By Human Dna
Polymerase Kappa Opposite The 7,8-Dihydro-8-
Oxodeoxyguanosine Adduct
gi|240104256|pdb|2W7O|B Chain B, Structure And Activity Of Bypass Synthesis By Human Dna
Polymerase Kappa Opposite The 7,8-Dihydro-8-
Oxodeoxyguanosine Adduct
gi|240104261|pdb|2W7P|A Chain A, Structure And Activity Of Bypass Synthesis By Human Dna
Polymerase Kappa Opposite The 7,8-Dihydro-8-
Oxodeoxyguanosine Adduct
gi|240104262|pdb|2W7P|B Chain B, Structure And Activity Of Bypass Synthesis By Human Dna
Polymerase Kappa Opposite The 7,8-Dihydro-8-
Oxodeoxyguanosine Adduct
gi|257472029|pdb|3IN5|A Chain A, Structure Of Human Dna Polymerase Kappa Inserting Datp
Opposite An 8-Oxog Dna Lesion
gi|257472030|pdb|3IN5|B Chain B, Structure Of Human Dna Polymerase Kappa Inserting Datp
Opposite An 8-Oxog Dna Lesion
Length = 508
Score = 209 bits (531), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 113/238 (47%), Positives = 158/238 (66%), Gaps = 9/238 (3%)
Query: 77 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 135
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 269 GTSAQEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 327
Query: 136 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 195
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 328 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGS 386
Query: 196 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 255
T+ + RKS+S ERTFS Y E+ L+ D+QKE L+GRT+T+KLK +
Sbjct: 387 THLTRDGERKSMSVERTFSEINKAEEQYSLCQELCSELAQDLQKERLKGRTVTIKLKNVN 446
Query: 256 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVR 307
FEV+TRA T+ +S++E+I A LLK E+ P+ LRL+G+R++ F ++ R
Sbjct: 447 FEVKTRASTVSSVVSTAEEIFAIAKELLKTEIDADFPHPLRLRLMGVRISSFPNEEDR 504
Score = 101 bits (252), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 44/69 (63%), Positives = 53/69 (76%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFGVRAAMPGFIA++LCP+LI VP +F KY S +++ YDPNFMA SLDEAYL
Sbjct: 125 ARRFGVRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYL 184
Query: 68 DITEVCRER 76
+IT+ ER
Sbjct: 185 NITKHLEER 193
>gi|255955303|ref|XP_002568404.1| Pc21g13870 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211590115|emb|CAP96284.1| Pc21g13870 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 611
Score = 209 bits (531), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 118/300 (39%), Positives = 176/300 (58%), Gaps = 7/300 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR+ M F+A+KLCP+L+ +P ++ KYT + R + +YDP F +AS+DEAYL
Sbjct: 153 ARKFGVRSGMASFVAKKLCPQLVLLPQNYEKYTAKAKEIRAIMAEYDPLFESASIDEAYL 212
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
+IT C E + E+ +R + E ++ SAG+A N +AK+ S+INKPNGQF +PN
Sbjct: 213 NITAYCNENHLEPDEVVRRMRAEILETTKVSVSAGIAANAKIAKIASNINKPNGQFQVPN 272
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
DR A+M F+ L +RK+ GIG+V E L + G+ C ++ +LL +F F
Sbjct: 273 DRDAIMEFMRDLSVRKVNGIGRVFERELESI-GVKKCGDIFPHRALLTKLFGEKAFQFLA 331
Query: 188 SVGLGLGSTNTP--QARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
LGLG T + RKS+S+E TF DK L KL A+ L D+ + +GR
Sbjct: 332 QCYLGLGRTKMEPVETHERKSVSTETTFHEIGDKEELRAKLWWAAQELEKDLARTQFKGR 391
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLRLIGLRVTQF 301
TL LK+K +FEV TR + +S ++D+ A + L+ ++P + LRL+GLR +
Sbjct: 392 TLVLKVKLHTFEVLTRQTAPPRAVSLAKDLYSFALPMLAKLERDIPDMKLRLLGLRCSNL 451
>gi|258577383|ref|XP_002542873.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
gi|237903139|gb|EEP77540.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
Length = 601
Score = 208 bits (530), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 118/300 (39%), Positives = 178/300 (59%), Gaps = 7/300 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++G R+ M F+A+KLCPELI +P ++ KYT ++ R + YD F +AS+DEAYL
Sbjct: 150 ARKYGCRSGMASFVAKKLCPELICLPQNYAKYTAKANEIRAILVNYDSRFESASIDEAYL 209
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
+ITE C + E ++LR ++ E +T SAG+A N +AK+ S+ NKPNGQF +P+
Sbjct: 210 NITEYCSTNNMGPEEAVQKLRDTIAAETNITVSAGIAANAKIAKIASNWNKPNGQFYVPS 269
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
+R A+M F++ +P+RK+ G+G+V E L D GI TC ++ ++L +F F +
Sbjct: 270 ERAAIMDFMAKIPVRKVNGVGRVFEREL-DALGIKTCRDIYPLRAMLAPLFGQKAFQFLM 328
Query: 188 SVGLGLGSTNTPQA--RFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
LGLG T A R RKS+ +E TF E A L KL A L D++K +GR
Sbjct: 329 QCYLGLGRTTISPAEERQRKSVGTESTFRDLEGLANLQDKLKSTAVELEKDLRKADCKGR 388
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK---AELP-VSLRLIGLRVTQF 301
TL LK+K +FE+ +R K + ++++ ++A LL E P + +RL+GLR T
Sbjct: 389 TLVLKVKLHTFEIISRQAVTPKPVHLADELYRNALPLLTKIYKETPNLKIRLMGLRCTHL 448
>gi|169785539|ref|XP_001827230.1| DNA-directed polymerase kappa [Aspergillus oryzae RIB40]
gi|83775978|dbj|BAE66097.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391866150|gb|EIT75422.1| putative DNA damage inducible protein [Aspergillus oryzae 3.042]
Length = 604
Score = 208 bits (530), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 121/300 (40%), Positives = 177/300 (59%), Gaps = 7/300 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG R+ M F+A KLCP+LI +P + KY+ + R +F +YDP F +AS+DEAYL
Sbjct: 154 ARKFGCRSGMASFVAMKLCPQLICLPINHQKYSAKAQEIRAIFAQYDPLFESASIDEAYL 213
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
+IT C E I + +R V E+ ++ SAG+A N +AK+ S+ NKPNGQF +PN
Sbjct: 214 NITAYCTENQIDPEDAVNRMRAEVLEQTKISVSAGIAANAKIAKIASNRNKPNGQFRVPN 273
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
DR A++ F+ LP+RK+ G+G+V E L D GI TC ++ + +LL +F F
Sbjct: 274 DRDAILEFMKDLPVRKVNGVGRVFEREL-DAVGIKTCGDIYSQRALLAKLFGEKAFHFLA 332
Query: 188 SVGLGLGSTN-TPQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
LGLG T P + RKS+ +E TF+ K L KL IA+ L D+ + +GR
Sbjct: 333 QCYLGLGRTKIQPVENYERKSVGTESTFNEMGGKEALREKLWAIAQELEKDLTRTEFKGR 392
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLRLIGLRVTQF 301
TL LK+K A+FEV +R K + ++D+ + + L+ E+P + LRL+GLR T
Sbjct: 393 TLVLKVKLATFEVLSRQCQPPKAVFLAKDLYTFSLPMLEKLEKEIPNMRLRLLGLRCTNL 452
>gi|213408879|ref|XP_002175210.1| DNA polymerase kappa [Schizosaccharomyces japonicus yFS275]
gi|212003257|gb|EEB08917.1| DNA polymerase kappa [Schizosaccharomyces japonicus yFS275]
Length = 532
Score = 207 bits (527), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 129/352 (36%), Positives = 196/352 (55%), Gaps = 16/352 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR+AMP FIAR+LCP LI +P KY S K+ +YDPN AS+DEAYL
Sbjct: 156 ARKFGVRSAMPEFIARQLCPNLIVLPLRMMKYQEKSAEIAKILQEYDPNMCKASVDEAYL 215
Query: 68 DITEVCRERG--ISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL 125
D+T+ + + + E LR +V E+ G+T S G+ N +LAK+ S++ KPN QF +
Sbjct: 216 DLTDYLTKHNEEETVEAVVEHLRQTVAEKTGITVSCGIGANLMLAKIASNMRKPNDQFSI 275
Query: 126 PNDRMAVMTFISSLPIRK--------IGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAV 177
R A++ F+ +LP RK + GIG+V E L + ++ C ++L++ L V
Sbjct: 276 GRTREAILEFMDTLPCRKVYLELNHNVNGIGRVLEQELSSL-NVHNCGDILRRKGYLYYV 334
Query: 178 FSHSTADFFLSVGLGLGS--TNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLS 234
F + LS LG+ + A RKSI +E TFS+ + + +KL ++ +S
Sbjct: 335 FQEKSFQNLLSYALGISNNVVKPTDASNRKSIGNEMTFSIPMGSEKTISQKLKQLCFSVS 394
Query: 235 ADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLI 294
M++ L G ++ LKLKT SFEVRTR L Y + S+ I K+ LL ELPV +RL+
Sbjct: 395 ETMKQRNLVGNSVVLKLKTTSFEVRTRQTNLNTYTNESDIIYKYVLQLLSYELPVQVRLL 454
Query: 295 GLRVTQFNEDKVRAPSDPTQKTLTNFMTSGHASKKIVGDQNSLGSDINDDCL 346
G+R+T+ + + S + T N + S+ ++ D S+ I ++CL
Sbjct: 455 GVRMTKLQDASIYEESKLS-FTKENGVQCPICSRYLINDACSVDKHI-EECL 504
>gi|353234314|emb|CCA66340.1| related to DNA polymerase kappa [Piriformospora indica DSM 11827]
Length = 664
Score = 207 bits (527), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 127/300 (42%), Positives = 179/300 (59%), Gaps = 6/300 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+ GVR+ M G IA+KL P+LIFV F++Y+ S + +YD +DEAYL
Sbjct: 161 ARKLGVRSGMAGHIAKKLAPDLIFVTNHFSRYSEVSGQVMTILRRYDETMNPVGVDEAYL 220
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPN--RLLAKVCSDINKPNGQFVL 125
+IT+ C I+ E E +R ++++E LT SAG+APN ++LAK+CS+ NKPNG F L
Sbjct: 221 NITDYCEANKITPEECTENIRKAIFQETKLTASAGIAPNKRKMLAKICSERNKPNGLFKL 280
Query: 126 PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADF 185
D A+ F+ LPIR+I G+G+VTE +L V GI TCE++ + + L + H
Sbjct: 281 EFDAQAIRDFMKGLPIRRIPGVGRVTERLLESV-GIKTCEDIYTQRATLVLMDKHFHMHD 339
Query: 186 FLSVGLGLGSTNT-PQAR-FRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLR 243
L + LGLGS P R RKS+ SERTF D A + KL ++A+ L DM++ G
Sbjct: 340 KLEIYLGLGSNVVRPWPREARKSVGSERTFHAISDPARINEKLEQVAKELEEDMERLGYS 399
Query: 244 GRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQFNE 303
G T+TLKLK +FE RA ++ + I ++L LL ELP+ LRL+GLRVT +
Sbjct: 400 GHTVTLKLKLDTFE-GNRAKSVHRPIRKYNELLSVGQELLAHELPLKLRLLGLRVTNLKD 458
>gi|443893809|dbj|GAC71265.1| predicted DNA damage inducible protein [Pseudozyma antarctica T-34]
Length = 658
Score = 207 bits (526), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 122/301 (40%), Positives = 172/301 (57%), Gaps = 9/301 (2%)
Query: 8 ARR-FGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAY 66
ARR +GVR+ M F+A+ LCP LI V D Y S VF +YD N ASLDEAY
Sbjct: 196 ARRGYGVRSGMAVFVAKALCPHLIVVKNDMQSYVAASHKVMAVFERYDENLAQASLDEAY 255
Query: 67 LDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP 126
LDIT+ + S E+ ++LR V E LT S G+APN +LAK+ SD NKP+GQF +
Sbjct: 256 LDITDYLEQHSGSIDEVVQQLRDEVRNETQLTVSVGIAPNTMLAKISSDRNKPDGQFRVH 315
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFF 186
DR ++ F+ LP RKI GIG+V E IL + G+NTC ++ L D+
Sbjct: 316 PDRKTIVDFMRDLPCRKIPGIGRVNERIL-ESLGVNTCGDIWHNRVQLWLALD-GKIDWL 373
Query: 187 LSVGLGLGSTNT-PQAR-FRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRG 244
+ LG+G+T P R RKS+ E TFS T D L L E A+ + D+++ +G
Sbjct: 374 IKAHLGIGNTVVEPSKREQRKSVGREHTFSPTSDTQSLLDLLKESAQRVQNDLERLDFKG 433
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL----PVSLRLIGLRVTQ 300
+T+TL K +++ +RA T + + ++E++ + S LL E+ P+SLRLIG+RVT
Sbjct: 434 KTVTLVAKRDNYQRFSRARTSTRLVHTAEELYEITSSLLLQEIERQGPLSLRLIGVRVTH 493
Query: 301 F 301
Sbjct: 494 L 494
>gi|449278668|gb|EMC86459.1| DNA polymerase kappa, partial [Columba livia]
Length = 864
Score = 207 bits (526), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 112/254 (44%), Positives = 166/254 (65%), Gaps = 10/254 (3%)
Query: 77 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 136
G S E+ +E+R + ++ LT SAG+APN +LAK+CSD NKPNGQ+ +P +R AV+ F+
Sbjct: 278 GNSAEEVVKEIRFRIEQKTQLTASAGIAPNTMLAKMCSDCNKPNGQYKIPPERQAVLDFL 337
Query: 137 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 196
LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ FL + LGLGST
Sbjct: 338 KDLPIRKVPGIGKVTEKMLK-ALGIVTCSELYQQRALLSLLFSEASWRNFLDISLGLGST 396
Query: 197 NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 256
+ + RKS+S+ERTFS Y E+ L+ ++QKEGL+G+T+TLKLK +F
Sbjct: 397 HLERDGERKSMSTERTFSEMNTAEDQYSLCRELCRDLAQELQKEGLKGKTVTLKLKNVNF 456
Query: 257 EVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVRAPS 310
EV+TRA T+ +S+ E+I A LL E+ P+ +RL+G+RV+ F ++ +
Sbjct: 457 EVKTRASTVLSSVSTEEEIFAVAKDLLGTEIDSVAPHPLRIRLMGVRVSGFLSEEEKKYQ 516
Query: 311 DPTQKTLTNFMTSG 324
QK++T+F+ SG
Sbjct: 517 ---QKSITSFLKSG 527
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 43/69 (62%), Positives = 50/69 (72%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFGVRAAMPGFIA+KLCP L VP +F KY S R++ +YDPNFM LDEAYL
Sbjct: 142 ARRFGVRAAMPGFIAKKLCPHLTIVPLNFEKYGKVSKEVREILSEYDPNFMPMGLDEAYL 201
Query: 68 DITEVCRER 76
++TE ER
Sbjct: 202 NLTEHLEER 210
>gi|170092351|ref|XP_001877397.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164647256|gb|EDR11500.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 420
Score = 206 bits (525), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 112/270 (41%), Positives = 159/270 (58%), Gaps = 12/270 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++GVR+ MPGFIA+KLCP+LI V +F++Y+ S +F +YDPN A DEAYL
Sbjct: 146 ARKYGVRSGMPGFIAKKLCPDLILVSNNFSRYSEMSAKVMDIFRRYDPNMCPAGSDEAYL 205
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
+ITE G++ +E+R +V+ LT SAG+APN+ NKPNGQF +P
Sbjct: 206 NITEYSVRHGLTAEVCVQEMRKAVHAITQLTVSAGIAPNK---------NKPNGQFQIPF 256
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
D ++ F+ L IRK+ GIG+V E +L + GI TC ++ ++ + F L
Sbjct: 257 DSASIKAFMHHLSIRKVPGIGRVNERLLESI-GIKTCGDIYMHRVVISVMDKRFGLKFLL 315
Query: 188 SVGLGLGSTNT-PQAR-FRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
LG+ S P R RKSI +ERTFS DK + +KL EIA L DM + G GR
Sbjct: 316 QTHLGIASNIVEPHLREERKSIGAERTFSSLGDKEKILQKLQEIAAELEKDMSRNGWTGR 375
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDI 275
T+TLK K +++V TRA T +Y+ + E++
Sbjct: 376 TVTLKYKLDTYQVFTRAKTFDRYVFTKEEL 405
>gi|432875108|ref|XP_004072678.1| PREDICTED: DNA polymerase kappa-like [Oryzias latipes]
Length = 871
Score = 205 bits (521), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 117/264 (44%), Positives = 165/264 (62%), Gaps = 11/264 (4%)
Query: 77 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 136
G S E E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ LP R AVM FI
Sbjct: 275 GTSVEEAVREMRFRIEQKTMLTASAGIAPNMMLAKVCSDKNKPNGQYRLPPTREAVMDFI 334
Query: 137 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 196
LP+RK+ GIGKV+E +L + I C + Q+ +LL +FS + F+ V LGLGST
Sbjct: 335 QDLPVRKVCGIGKVSEKML-NALEITKCSHLGQQMALLSLLFSETACQNFMEVSLGLGST 393
Query: 197 NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 256
+ RKS+S ERTF D Y E+ + L+ DM+KEGL+G+T++LKLK +F
Sbjct: 394 RISRHEERKSMSIERTFKELSDAEEQYSLCRELCKDLAEDMKKEGLKGKTVSLKLKNVNF 453
Query: 257 EVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVRAPS 310
EV+TRA TLQ +++ E++ A LLK E+ P+ LRL+G+R++ F +A
Sbjct: 454 EVKTRAQTLQCAVAAEEELFAVAKDLLKTEIDNESPHPLKLRLMGVRMSAFVSSDHKA-- 511
Query: 311 DPTQKTLTNFMTSGHA-SKKIVGD 333
PTQK++ F+ SG + S +I G+
Sbjct: 512 -PTQKSILGFLKSGSSGSSEIKGE 534
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 49/99 (49%), Positives = 62/99 (62%), Gaps = 4/99 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++GVRAAMPGFIA+KLC +L+ VP +F KY SD R++F YDP+F+ SLDEAYL
Sbjct: 141 ARKYGVRAAMPGFIAKKLCSDLVIVPPNFDKYRAVSDEIREIFADYDPDFLPMSLDEAYL 200
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPN 106
D TE +R E LRT Y +T + PN
Sbjct: 201 DFTEHLEQRQT----WPESLRTHRYSSKSITTAVKETPN 235
>gi|134115815|ref|XP_773621.1| hypothetical protein CNBI2350 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50256247|gb|EAL18974.1| hypothetical protein CNBI2350 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 598
Score = 205 bits (521), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 118/298 (39%), Positives = 166/298 (55%), Gaps = 10/298 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR+AM GFIA+KLCP +I F YT S ++V +YD N M ASLDE YL
Sbjct: 134 ARKFGVRSAMAGFIAKKLCPHIILTDLHFDLYTKASKAVKEVLVQYDENLMMASLDEGYL 193
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
+IT ++ E+ E+R V E+ LT SAG+A NR+LA KPNG F L
Sbjct: 194 NITPYMSTHNMTASEVVTEIRAQVEEKTSLTISAGIAANRMLA-------KPNGHFELAF 246
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
DR ++ F+ LP+R I G G+VTE L + GI TC ++ +K L +
Sbjct: 247 DRATIVRFMRDLPVRNIPGFGRVTERCL-EGLGIQTCGDIYEKRVDLLLMDHWFGFRGLC 305
Query: 188 SVGLGLGSTNTPQARF--RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
LG+ R R+S+ ERTF D + L +I E L D+ + G+
Sbjct: 306 RAYLGIADNTVAPGRREERRSVGVERTFRDKTDDEDIMATLIDIVEELGKDLDRLQYAGK 365
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQFNE 303
T+T+K K ++E +TRA ++ KYISS+ DIL A LLK ELP+ +RL+G+R++ +
Sbjct: 366 TVTVKYKLHTYENKTRAKSIPKYISSATDILPIAQELLKKELPLRIRLLGVRLSTLKD 423
>gi|224091441|ref|XP_002187639.1| PREDICTED: DNA polymerase kappa-like, partial [Taeniopygia guttata]
Length = 633
Score = 204 bits (519), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 115/257 (44%), Positives = 169/257 (65%), Gaps = 16/257 (6%)
Query: 77 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 136
G S E+ +E+R + ++ LT SAG+APN +LAK+CSD NKPNGQ+ + +R+AV+ F+
Sbjct: 47 GTSAEEVVKEIRFRIEQKTQLTASAGIAPNTMLAKMCSDHNKPNGQYRISPERLAVLDFL 106
Query: 137 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 196
LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS + FL + LGLGST
Sbjct: 107 KDLPIRKVPGIGKVTEKMLK-ALGIVTCSELYQQRALLSLLFSEVSWRNFLDISLGLGST 165
Query: 197 NTPQARFRKSISSERTFS---VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 253
+ + RKS+S+ERTFS ED+ L R E+ L+ D+QKEGL+G+T+TLKLK
Sbjct: 166 HLEKDGERKSMSTERTFSEINTAEDQYSLCR---ELCRDLAQDLQKEGLKGKTVTLKLKN 222
Query: 254 ASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVR 307
+FEV+TRA T+ +S+ E+I A LL E+ P+ +RL+G+RV+ F ++ +
Sbjct: 223 VNFEVKTRASTVLSSVSTEEEIFTVAKDLLGTEINSVAPHPLRIRLMGVRVSGFLTEEEK 282
Query: 308 APSDPTQKTLTNFMTSG 324
QK++T+F+ SG
Sbjct: 283 KYQ---QKSITSFLKSG 296
>gi|358060315|dbj|GAA94069.1| hypothetical protein E5Q_00716 [Mixia osmundae IAM 14324]
Length = 664
Score = 204 bits (519), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 126/318 (39%), Positives = 174/318 (54%), Gaps = 25/318 (7%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++GVR+A+ G+IA+KLCP LIFV DFTKY+ S + KYDP+ ASLDEAYL
Sbjct: 177 ARKYGVRSALAGYIAKKLCPHLIFVKPDFTKYSQASARVMAILRKYDPHLAPASLDEAYL 236
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
+IT R G+S + ++RT + E GLT SAG+APN LLAK+ +D+NKP+GQ +
Sbjct: 237 NITVFMRSSGLSADDAVMQMRTEIKETTGLTVSAGIAPNTLLAKMAADVNKPDGQCRVMP 296
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
R AV+ F S+ P+RKI G+G+VTE L + ++ K +L + + + DF L
Sbjct: 297 TRDAVVEFTSAQPVRKIFGVGRVTEAWLV-ALDVRRISDIWAKRGMLHLIRTSISLDFLL 355
Query: 188 SVGLGLGST--NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
LGLGS+ + RKS+ E TF D + L +AE L D Q GR
Sbjct: 356 KAYLGLGSSLVSASTRESRKSVGREDTFGKLADYSGFLEVLRALAETLGNDCQSLQFAGR 415
Query: 246 TLTLKLKTASFEVRTRAVTLQKY--ISSSEDILKHASVLL------------KAELPVS- 290
TLTLK K +++E TRA T+ ++ +E K LL + PV
Sbjct: 416 TLTLKFKLSTYEPFTRARTIGQHHLYRDTEQFYKVGKELLDEAITERRKLYDDGKTPVGC 475
Query: 291 -------LRLIGLRVTQF 301
LRL+GLR+T
Sbjct: 476 GGTREIELRLLGLRITNL 493
>gi|71022115|ref|XP_761288.1| hypothetical protein UM05141.1 [Ustilago maydis 521]
gi|46097782|gb|EAK83015.1| hypothetical protein UM05141.1 [Ustilago maydis 521]
Length = 682
Score = 203 bits (517), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 121/301 (40%), Positives = 169/301 (56%), Gaps = 9/301 (2%)
Query: 8 ARR-FGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAY 66
ARR +GVR+ M F+A+ LCP LI V D Y S +F +YD N ASLDEAY
Sbjct: 187 ARRGYGVRSGMAVFVAKALCPHLIVVKNDMQSYVQASQKVMAIFEQYDENLAKASLDEAY 246
Query: 67 LDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP 126
LDITE + S ++ ++LR V LT S G+APN +LAK+ SD NKP+GQF +
Sbjct: 247 LDITEYVEQNASSIDQVVQQLRNQVRSHTQLTVSVGIAPNTMLAKISSDRNKPDGQFRIQ 306
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFF 186
DR ++ F+ +LP RKI GIG+V E IL + G+ TC E+ K L F ++
Sbjct: 307 PDRKVIVDFMRNLPCRKIPGIGRVNERIL-ESLGVTTCGEIWDKRVELWLSFD-GKIEWL 364
Query: 187 LSVGLGLGSTNT-PQAR-FRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRG 244
+ LG+G+T P R RKS+ E TFS T D L L E A+ + D+ + +
Sbjct: 365 IKAHLGIGNTVVEPSKREERKSVGREHTFSPTSDTKALLDLLKESAQRVEQDLARLDFKA 424
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL----PVSLRLIGLRVTQ 300
+T+TL K +F+ +RA T + + +E++ S LL E+ +SLRLIG+RVTQ
Sbjct: 425 KTITLVAKRDNFQRFSRARTSTRLVHRAEELYDITSSLLMQEIEREGAISLRLIGVRVTQ 484
Query: 301 F 301
Sbjct: 485 L 485
>gi|440910682|gb|ELR60452.1| DNA polymerase kappa [Bos grunniens mutus]
Length = 884
Score = 202 bits (515), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 117/272 (43%), Positives = 169/272 (62%), Gaps = 22/272 (8%)
Query: 77 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 135
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 294 GTSAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 352
Query: 136 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 195
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ FL + LGLGS
Sbjct: 353 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHHFLHISLGLGS 411
Query: 196 TNTPQARF--------RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTL 247
T+ RKS+S ERTFS Y E+ L+ D+QK+GL+GRT+
Sbjct: 412 THLASLFIFFISRDGERKSMSVERTFSEISKAEEQYSLCQELCSELAQDLQKKGLKGRTV 471
Query: 248 TLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQF 301
T+KLK +FEV+TRA T+ +S++E+I A LL+ E+ P+ LRL+G+R++ F
Sbjct: 472 TIKLKNVNFEVKTRASTVSTVVSTAEEIFVIAKELLRTEIDADFPQPLRLRLMGVRLSGF 531
Query: 302 -NEDKVRAPSDPTQKTLTNFMTSGHASKKIVG 332
NE++ + Q+++ F+ G+ + G
Sbjct: 532 PNEEEKKH----QQRSIIGFLQPGNQALSATG 559
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 44/69 (63%), Positives = 53/69 (76%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFGVRAAMPGFIA++LCP+LI VP +F KY S +++ YDPNFMA SLDEAYL
Sbjct: 150 ARRFGVRAAMPGFIAKRLCPQLIIVPPNFDKYQAVSREVKEILTDYDPNFMAMSLDEAYL 209
Query: 68 DITEVCRER 76
+IT+ ER
Sbjct: 210 NITKHLEER 218
>gi|63054412|ref|NP_587767.2| DinB translesion DNA repair polymerase, pol kappa
[Schizosaccharomyces pombe 972h-]
gi|74626930|sp|O74944.3|POLK_SCHPO RecName: Full=DNA polymerase kappa; AltName: Full=Meiotically
up-regulated gene 40 protein
gi|51950409|emb|CAA19259.2| DinB translesion DNA repair polymerase, pol kappa
[Schizosaccharomyces pombe]
Length = 547
Score = 202 bits (515), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 109/302 (36%), Positives = 182/302 (60%), Gaps = 9/302 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR+AMP FIARK+CP+L+ +P + ++Y S + V +YD N AS+DE Y+
Sbjct: 171 ARKFGVRSAMPEFIARKICPDLVVIPLNLSEYAIKSKEIQNVLAQYDSNLCPASIDEFYM 230
Query: 68 DITEVCRERGIS-GIE----IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQ 122
++T R + ++ +E + E++R V+EE G+T S G+A N+LLAK+ S+ KPN Q
Sbjct: 231 NLTSHLRLQELAFTVENITMVVEKIRKQVHEETGVTVSCGIAANKLLAKIASNKRKPNNQ 290
Query: 123 FVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHST 182
F +P D + + F++ LP+R++ GIG+V E L + I TC ++ + +L +F +
Sbjct: 291 FFIPFDEIGISKFMNDLPVREVSGIGRVLEQQLLGL-EIKTCGDIQRNLVILSYIFLPKS 349
Query: 183 ADFFLSVGLGLGSTNTPQ--ARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQK 239
L G G+T + RK+I SE TFS +++ KL + + +S ++QK
Sbjct: 350 FQNLLRCSYGFGTTILDEYGESKRKTIGSEATFSSNLSSPSIIEYKLRLLVQNVSENLQK 409
Query: 240 EGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVT 299
GL ++ +K KT+ F+V T+ ++ ++I S D+LK A LL+ P+++RL+G+R T
Sbjct: 410 RGLVTNSIAIKYKTSEFQVHTKQKSIGQFIHSESDLLKPALQLLRQSYPMTIRLLGVRAT 469
Query: 300 QF 301
+
Sbjct: 470 KL 471
>gi|327262983|ref|XP_003216301.1| PREDICTED: DNA polymerase kappa-like [Anolis carolinensis]
Length = 820
Score = 202 bits (514), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 117/263 (44%), Positives = 169/263 (64%), Gaps = 17/263 (6%)
Query: 77 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 136
G S E EE+R + ++ LT SAG+APN +LAK+CSD NKPNGQF + DR VM FI
Sbjct: 269 GTSAEEAVEEIRFRIEQKTKLTASAGIAPNTMLAKMCSDQNKPNGQFRISPDREHVMNFI 328
Query: 137 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 196
LPIRK+ GIGKVTE +LR GI TC ++ Q+ +L+ +FS ++ FL + LGLGST
Sbjct: 329 KDLPIRKVPGIGKVTEKMLR-ALGIVTCTDLYQQRALISLLFSETSWHNFLEISLGLGST 387
Query: 197 NTPQARFRKSISSERTFSV--TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 254
+ RKS+S+ERTF+ TE++ Y E+ L+ D++KEGL+ RT+TLKLK
Sbjct: 388 QLERDGERKSMSTERTFNEINTEEQ---YSLCKELCADLAQDLKKEGLKARTVTLKLKNV 444
Query: 255 SFEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQF-NEDKVR 307
+FEV+TRA T+ +S+ E+I A LL +E+ P+ LRL+G+RV+ F NE++ +
Sbjct: 445 NFEVKTRATTVLSAVSTEEEIFAIAKDLLGSEIVSVAPQPLRLRLMGVRVSGFLNEEEKK 504
Query: 308 APSDPTQKTLTNFMTSGHASKKI 330
QK++ NF+ ++ K+
Sbjct: 505 Y----QQKSIVNFLGKQISASKL 523
>gi|149059108|gb|EDM10115.1| polymerase (DNA directed) kappa, isoform CRA_a [Rattus norvegicus]
gi|149059109|gb|EDM10116.1| polymerase (DNA directed) kappa, isoform CRA_a [Rattus norvegicus]
Length = 851
Score = 201 bits (512), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 118/255 (46%), Positives = 163/255 (63%), Gaps = 10/255 (3%)
Query: 77 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 136
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ + R AVM FI
Sbjct: 286 GTSAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQIVPSRSAVMDFI 345
Query: 137 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 196
LPIRK+ GIGKVTE +L GI TC E+ Q+ +LL +FS S+ +FL V LGLGST
Sbjct: 346 KDLPIRKVSGIGKVTEKMLL-ALGIVTCTELYQQRALLSLLFSESSWHYFLHVALGLGST 404
Query: 197 NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 256
+ + RKS+S ERTFS Y E+ L+ D+QKEGL+GRT+T+KLK F
Sbjct: 405 DLARDGERKSMSVERTFSEINKTEEQYSLCQELCTELAHDLQKEGLKGRTVTIKLKNVDF 464
Query: 257 EVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVRAPS 310
EV+TRA T+ IS++EDI A LL+ E+ P+ LRL+G+R++ F+ D R
Sbjct: 465 EVKTRASTVPSAISTAEDIFAVAKELLRTEVTAGSPQPLRLRLMGVRMSTFSNDDDRKHQ 524
Query: 311 DPTQKTLTNFMTSGH 325
Q+++ F+ +G+
Sbjct: 525 ---QRSIIGFLQAGN 536
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 44/69 (63%), Positives = 55/69 (79%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFGVRAAMPGFIA++LCP+LI VP +F KY S +++ +YDPNFMA SLDEAYL
Sbjct: 142 ARRFGVRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILAEYDPNFMAMSLDEAYL 201
Query: 68 DITEVCRER 76
+IT+ +ER
Sbjct: 202 NITQHLQER 210
>gi|189491622|ref|NP_612525.1| DNA polymerase kappa [Rattus norvegicus]
gi|187469039|gb|AAI66778.1| Polk protein [Rattus norvegicus]
Length = 851
Score = 201 bits (512), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 118/255 (46%), Positives = 163/255 (63%), Gaps = 10/255 (3%)
Query: 77 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 136
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ + R AVM FI
Sbjct: 286 GTSAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQIVPSRSAVMDFI 345
Query: 137 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 196
LPIRK+ GIGKVTE +L GI TC E+ Q+ +LL +FS S+ +FL V LGLGST
Sbjct: 346 KDLPIRKVSGIGKVTEKMLL-ALGIVTCTELYQQRALLSLLFSESSWHYFLHVALGLGST 404
Query: 197 NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 256
+ + RKS+S ERTFS Y E+ L+ D+QKEGL+GRT+T+KLK F
Sbjct: 405 DLARDGERKSMSVERTFSEINKTEEQYSLCQELCTELAHDLQKEGLKGRTVTIKLKNVDF 464
Query: 257 EVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVRAPS 310
EV+TRA T+ IS++EDI A LL+ E+ P+ LRL+G+R++ F+ D R
Sbjct: 465 EVKTRASTVPSAISTAEDIFAVAKELLRTEVTAGSPQPLRLRLMGVRMSTFSNDDDRKHQ 524
Query: 311 DPTQKTLTNFMTSGH 325
Q+++ F+ +G+
Sbjct: 525 ---QRSIIGFLQAGN 536
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 44/69 (63%), Positives = 55/69 (79%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFGVRAAMPGFIA++LCP+LI VP +F KY S +++ +YDPNFMA SLDEAYL
Sbjct: 142 ARRFGVRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILAEYDPNFMAMSLDEAYL 201
Query: 68 DITEVCRER 76
+IT+ +ER
Sbjct: 202 NITQHLQER 210
>gi|45383754|ref|NP_989514.1| DNA polymerase kappa [Gallus gallus]
gi|26983954|gb|AAM80560.1| DNA polymerase kappa [Gallus gallus]
Length = 867
Score = 201 bits (511), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 111/254 (43%), Positives = 163/254 (64%), Gaps = 10/254 (3%)
Query: 77 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 136
G S E +E+R + ++ LT SAG+APN +LAK+CSD NKPNGQ + +R AV+ FI
Sbjct: 280 GTSAEEAVKEIRFRIEQKTQLTASAGIAPNTMLAKMCSDRNKPNGQCRISPERQAVLDFI 339
Query: 137 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 196
LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ FL + LGLGST
Sbjct: 340 KDLPIRKVPGIGKVTEKMLK-ALGIVTCSELYQQRALLSLLFSEASWRSFLDISLGLGST 398
Query: 197 NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 256
+ + RKS+S+ERTFS Y E+ L+ D+QKEGL+G+T+TLKLK +F
Sbjct: 399 HLEKDGERKSMSTERTFSEISKAEDQYSLCQELCRELAQDLQKEGLKGKTVTLKLKNVNF 458
Query: 257 EVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVRAPS 310
EV+TRA T+ +S+ ++I A +LL E+ P+ +RL+G+RV+ F ++ +
Sbjct: 459 EVKTRASTVLSSVSTEDEIFAVAKMLLGTEIDSVAPHPLRIRLMGVRVSGFLSEEEKKYQ 518
Query: 311 DPTQKTLTNFMTSG 324
QK++ +F+ SG
Sbjct: 519 ---QKSIKSFLKSG 529
Score = 95.9 bits (237), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 41/69 (59%), Positives = 50/69 (72%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFGVRAAMPGFIA+KLCP L VP +F KY S +++ +YDP+FM LDEAYL
Sbjct: 144 ARRFGVRAAMPGFIAKKLCPHLTIVPLNFEKYRKVSKEVKEILAEYDPHFMPMGLDEAYL 203
Query: 68 DITEVCRER 76
++TE ER
Sbjct: 204 NVTEHLEER 212
>gi|193205700|ref|NP_001122692.1| Protein POLK-1, isoform a [Caenorhabditis elegans]
gi|374095490|sp|P34409.3|POLK_CAEEL RecName: Full=DNA polymerase kappa
gi|373253818|emb|CCD62142.1| Protein POLK-1, isoform a [Caenorhabditis elegans]
Length = 596
Score = 201 bits (510), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 148/391 (37%), Positives = 204/391 (52%), Gaps = 69/391 (17%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTD---FTKYT---------------------YYS 43
ARRFGVRA MPGFI+ KLCP L VP + +TK + +
Sbjct: 125 ARRFGVRAGMPGFISNKLCPSLTIVPGNYPKYTKVSRQFSQIFMEYDSDVGMMSLDEAFI 184
Query: 44 DLT--------RKVF----------C---KYDPN---FMAASLDEAYLDITEVCR----- 74
DLT +K F C ++D N ++E+ E R
Sbjct: 185 DLTDYVASNTEKKTFKRHRFGGDCPCWLPRFDENENTLEDLKIEESICPKCEKSRKIYYD 244
Query: 75 --ERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAV 132
E G E E+R V + GLTCSAG+A N +LAK+CSD+NKPNGQ+VL ND+ A+
Sbjct: 245 HVEFGTGREEAVREIRFRVEQLTGLTCSAGIASNFMLAKICSDLNKPNGQYVLENDKNAI 304
Query: 133 MTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLG 192
M F+ LPIRK+GGIG+V E L+ I T +M K +L F+ + + FL LG
Sbjct: 305 MEFLKDLPIRKVGGIGRVCEAQLK-AMDIQTVGDMNLKKNLYPLCFTPLSQESFLRTALG 363
Query: 193 LGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGL-RGRTLTLKL 251
L + RKSIS ERTFS T D +L + EI ML D++K G+ G+T+TLKL
Sbjct: 364 LPGRPSESDPRRKSISVERTFSPTSDFNILLEEHQEICRMLEEDVRKSGIVGGKTVTLKL 423
Query: 252 KTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQ--FNEDKVRAP 309
K +SF+V TR++T + S EDI K + LL+ E +RL+G+R++Q F ED+ +
Sbjct: 424 KLSSFDVLTRSLTPSDVVKSLEDIQKFSLELLEKEKGKEIRLLGVRLSQLIFEEDEKKR- 482
Query: 310 SDPTQKTLTNFMTSGHASKKIVGDQNSLGSD 340
KT+T F ++K + QN GS+
Sbjct: 483 ----SKTITEFW-----NEKKLQIQNLQGSE 504
>gi|440799683|gb|ELR20727.1| DNA polymerase kappa, putative [Acanthamoeba castellanii str. Neff]
Length = 463
Score = 201 bits (510), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 110/264 (41%), Positives = 160/264 (60%), Gaps = 26/264 (9%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR+AMPGFIA++LCPELI VP F KY S LT++VF +DP+F A SLDEA L
Sbjct: 208 ARKFGVRSAMPGFIAKQLCPELIIVPVHFDKYREASKLTQEVFAMFDPHFRAYSLDEASL 267
Query: 68 DITE-VCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP 126
++ + + S ++AE LAK+C D+NKP+GQF L
Sbjct: 268 HLSPYLAKHPDESAEQVAER----------------------LAKICCDVNKPDGQFRLQ 305
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFF 186
DR A++ F+ LP+RKI G+GKVTE +L+ + GI C E+ +K ++L +F S+A+FF
Sbjct: 306 ADREAIIAFLKDLPVRKISGVGKVTEQMLKGL-GITKCCEIQEKRAILFRLFKPSSAEFF 364
Query: 187 LSVGLGLGSTNTPQ--ARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRG 244
L LG+ S + + + RKS+S RTF + +A L + E+AE L+ M K+ L G
Sbjct: 365 LRASLGIWSPTSGEDSSPARKSVSKMRTFRPSGSQAFLMSQAREVAESLAKSMAKKSLAG 424
Query: 245 RTLTLKLKTASFEVRTRAVTLQKY 268
+ L + LKT F++ TR+ L ++
Sbjct: 425 KNLAIYLKTDEFKMFTRSTMLNRF 448
>gi|403343212|gb|EJY70929.1| DNA polymerase IV / kappa [Oxytricha trifallax]
Length = 839
Score = 199 bits (507), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 107/335 (31%), Positives = 184/335 (54%), Gaps = 14/335 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFGV + MP FI +LCPE+ F+ +++KY + SD + + +YD + + LDEA +
Sbjct: 266 ARRFGVSSGMPKFIGARLCPEITFIEANYSKYKHESDQFKDILAQYDSKYESQGLDEASI 325
Query: 68 DITEVCRERGISGIE----IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF 123
D+TE + + +E + ++R+ +YE LT S G+A N+LLAK+CS + KPNG
Sbjct: 326 DVTEFLKSNNMDNMEGKIFLGSKIRSQIYESTELTASCGIACNKLLAKICSGLKKPNGMT 385
Query: 124 VLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTA 183
L D+ + F+++LPI K+ GIGKV + +L + G+ C++M++K + + ++ S
Sbjct: 386 YLDFDQDEITNFMNNLPINKLMGIGKVHQRVLTGL-GVKMCQDMIEKATEIYVNYNESQF 444
Query: 184 DFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLR 243
FF+ LG+ N + +KSI +T +K ++ +A L +++ L
Sbjct: 445 QFFMRSALGI-DRNYHEDTVQKSIGVSQTIKPIHEKKEHDDRVRAMAIELYERLKESELM 503
Query: 244 GRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS--LRLIGLRVTQF 301
+TLTL+LKT F ++ R+ YI DI++ + LL PV +RLIG+R+ Q
Sbjct: 504 AKTLTLELKTVRFNIKQRSTNFHTYIWEKSDIVRASEELLNVMWPVGEPVRLIGIRLMQL 563
Query: 302 NEDKV------RAPSDPTQKTLTNFMTSGHASKKI 330
+ + D + +LT+ TS ++ ++
Sbjct: 564 RTRIIPKTKSGKGRQDISDPSLTHLRTSSNSDERF 598
>gi|388856805|emb|CCF49592.1| related to DNA polymerase kappa [Ustilago hordei]
Length = 680
Score = 199 bits (505), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 119/301 (39%), Positives = 169/301 (56%), Gaps = 9/301 (2%)
Query: 8 ARR-FGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAY 66
ARR +GVR+ M F+A+ LCP LI V +D Y S VF +YD N ASLDEAY
Sbjct: 192 ARRGYGVRSGMATFVAKALCPHLIVVKSDMQSYLQASHKVMAVFEQYDENLAKASLDEAY 251
Query: 67 LDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP 126
LDITE + + ++ + LR V E LT S G+APN +LAK+ SD NKP+GQF +
Sbjct: 252 LDITEYVEQHRGTIDQVVQHLRDQVRNETQLTVSVGIAPNTMLAKISSDRNKPDGQFRVQ 311
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFF 186
DR A++ + LP RKI GIG+V E IL + G+ TC E+ K L +
Sbjct: 312 PDRKAILDLMRHLPCRKIPGIGRVNERIL-ESLGVTTCGEIWNKRVQLWLALD-GKIQWL 369
Query: 187 LSVGLGLGSTNT-PQAR-FRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRG 244
+ LG+G+T P R RKS+ E TFS T D L L E ++ + D+++ +G
Sbjct: 370 IKAHLGIGNTLVEPSKREERKSVGREHTFSPTSDTQALLHFLKESSDRVQQDLERLEFKG 429
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL----PVSLRLIGLRVTQ 300
+T+TL K +F+ +RA T + ++ ++++ LL E+ P+SLRLIG+RVT
Sbjct: 430 KTVTLIAKRENFQRFSRARTSTRPVNRAQELYDITRSLLLQEIEREGPLSLRLIGVRVTH 489
Query: 301 F 301
Sbjct: 490 L 490
>gi|56160420|gb|AAV80824.1| polymerase kappa isoform 8 [Mus musculus]
Length = 547
Score = 198 bits (503), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 107/224 (47%), Positives = 146/224 (65%), Gaps = 7/224 (3%)
Query: 77 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 136
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ + R AVM FI
Sbjct: 286 GTSAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPSRSAVMDFI 345
Query: 137 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 196
LPIRK+ GIGKVTE +L GI TC E+ Q+ +LL +FS ++ +FL + LGLGST
Sbjct: 346 KDLPIRKVSGIGKVTEKMLM-ALGIVTCTELYQQRALLSLLFSETSWHYFLHIALGLGST 404
Query: 197 NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 256
+ + RKS+S ERTFS Y E+ L+ D+QKEGL+GRT+T+KLK +F
Sbjct: 405 DLARDGERKSMSVERTFSEISKTEEQYSLCQELCAELAHDLQKEGLKGRTVTIKLKNVNF 464
Query: 257 EVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLI 294
EV+TRA T+ IS++E+I A LL+ E+ P+ LRL+
Sbjct: 465 EVKTRASTVPAAISTAEEIFAIAKELLRTEVNVGSPHPLRLRLM 508
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 43/69 (62%), Positives = 54/69 (78%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFGVRAAMPGFIA++LCP+LI VP +F KY S +++ +YDPNFMA SLDEA L
Sbjct: 142 ARRFGVRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILAEYDPNFMAMSLDEAXL 201
Query: 68 DITEVCRER 76
+IT+ +ER
Sbjct: 202 NITQHLQER 210
>gi|47226716|emb|CAG07875.1| unnamed protein product [Tetraodon nigroviridis]
Length = 520
Score = 198 bits (503), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 114/259 (44%), Positives = 165/259 (63%), Gaps = 19/259 (7%)
Query: 77 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 136
G S E E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ LP R AVM F+
Sbjct: 269 GTSVEEAVREMRFRIEQKTMLTASAGIAPNMMLAKVCSDKNKPNGQYRLPPTREAVMEFV 328
Query: 137 SSLPIRK-IGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 195
LP+RK + G+GKV+E +L GI++C + QK +LL +FS ++ FL V LGLGS
Sbjct: 329 CDLPVRKVVSGVGKVSEKLL-SALGISSCSHLGQKMALLSLLFSETSWHHFLQVSLGLGS 387
Query: 196 TNTPQARFRKSISSERTF----SVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKL 251
P+ RKS+S+ERTF +V E +L + E+ E L+ D++KEGL+G+T+TLKL
Sbjct: 388 AFIPRHEERKSMSTERTFKEMSAVEEQLSLCH----ELCEDLANDLKKEGLKGKTVTLKL 443
Query: 252 KTASFEVRTRAVTLQKYISSSEDILKHASVLLKAE------LPVSLRLIGLRVTQFNEDK 305
K +FEV+TRA+TL ++++++I A LLK E P+ LRL+G+RV+ F
Sbjct: 444 KNVNFEVKTRALTLPYPVATADEIFTVAKDLLKTERDNESPQPLRLRLMGVRVSAFVSSD 503
Query: 306 VRAPSDPTQKTLTNFMTSG 324
+ P Q+++ F+ SG
Sbjct: 504 HK---KPLQRSIVGFLNSG 519
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 49/91 (53%), Positives = 59/91 (64%), Gaps = 4/91 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++GVRAAMPGFIA+KLCP L+ VPT+F KY S+ R++F YDP FM SLDEAYL
Sbjct: 135 ARKYGVRAAMPGFIAKKLCPHLVIVPTNFDKYRAVSNEIREIFTDYDPGFMPVSLDEAYL 194
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLT 98
D TE +R E LRT Y + T
Sbjct: 195 DFTEHVEKRQ----SWPESLRTRRYRASTTT 221
>gi|327532749|ref|NP_001126479.1| DNA polymerase kappa [Pongo abelii]
Length = 898
Score = 197 bits (502), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 115/285 (40%), Positives = 168/285 (58%), Gaps = 39/285 (13%)
Query: 77 GISGIEIAEELRTSVYEEAGLTCSAG---------------------------VAPNRLL 109
G S E+ +E+R + ++ LT SAG +APN +L
Sbjct: 287 GTSAEEVVKEIRFRIEQKTTLTASAGNNLIISFSLGDFNPVQDCRREPRRPQGIAPNTML 346
Query: 110 AKVCSDINKPNGQF-VLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEML 168
AKVCSD NKPNGQ+ +LPN R AVM FI LPIRK+ GIGKVTE +L+ GI TC E+
Sbjct: 347 AKVCSDKNKPNGQYQILPN-RQAVMDFIKDLPIRKVSGIGKVTEKMLK-ALGIITCTELY 404
Query: 169 QKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAE 228
Q+ +LL +FS ++ +FL + LGLGST+ + RKS+S ERTFS Y E
Sbjct: 405 QQRALLSLLFSETSWHYFLHISLGLGSTHLTRDGERKSMSVERTFSEINKAEEQYSLCQE 464
Query: 229 IAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL- 287
+ L+ D+QK+ L+GRT+T+KLK +FEV+TRA T+ +S++E+I A LLK E+
Sbjct: 465 LCSELAQDLQKQRLKGRTVTIKLKNVNFEVKTRASTVSSVVSTAEEIFAIAKELLKTEID 524
Query: 288 -----PVSLRLIGLRVTQFNEDKVRAPSDPTQKTLTNFMTSGHAS 327
P+ LRL+G+R++ F ++ R Q+++ F+ +G+ +
Sbjct: 525 ADFPHPLRLRLMGVRISSFPNEEDRKHQ---QRSIIGFLQAGNQA 566
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 43/69 (62%), Positives = 52/69 (75%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFGVRAAMPGFIA++LCP+LI P +F KY S +++ YDPNFMA SLDEAYL
Sbjct: 143 ARRFGVRAAMPGFIAKRLCPQLIIKPPNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYL 202
Query: 68 DITEVCRER 76
+IT+ ER
Sbjct: 203 NITKHLEER 211
>gi|55731632|emb|CAH92522.1| hypothetical protein [Pongo abelii]
Length = 898
Score = 197 bits (502), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 115/285 (40%), Positives = 168/285 (58%), Gaps = 39/285 (13%)
Query: 77 GISGIEIAEELRTSVYEEAGLTCSAG---------------------------VAPNRLL 109
G S E+ +E+R + ++ LT SAG +APN +L
Sbjct: 287 GTSAEEVVKEIRFRIEQKTTLTASAGNNLIISFSLGDFNPVQDCRREPRRPQGIAPNTML 346
Query: 110 AKVCSDINKPNGQF-VLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEML 168
AKVCSD NKPNGQ+ +LPN R AVM FI LPIRK+ GIGKVTE +L+ GI TC E+
Sbjct: 347 AKVCSDKNKPNGQYQILPN-RQAVMDFIKDLPIRKVSGIGKVTEKMLK-ALGIITCTELY 404
Query: 169 QKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAE 228
Q+ +LL +FS ++ +FL + LGLGST+ + RKS+S ERTFS Y E
Sbjct: 405 QQRALLSLLFSETSWHYFLHISLGLGSTHLTRDGERKSMSVERTFSEINKAEEQYSLCQE 464
Query: 229 IAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL- 287
+ L+ D+QK+ L+GRT+T+KLK +FEV+TRA T+ +S++E+I A LLK E+
Sbjct: 465 LCSELAQDLQKQRLKGRTVTIKLKNVNFEVKTRASTVSSVVSTAEEIFAIAKELLKTEID 524
Query: 288 -----PVSLRLIGLRVTQFNEDKVRAPSDPTQKTLTNFMTSGHAS 327
P+ LRL+G+R++ F ++ R Q+++ F+ +G+ +
Sbjct: 525 ADFPHPLRLRLMGVRISSFPNEEDRKHQ---QRSIIGFLQAGNQA 566
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 43/69 (62%), Positives = 53/69 (76%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFGVRAAMPGFIA++LCP+LI +P +F KY S +++ YDPNFMA SLDEAYL
Sbjct: 143 ARRFGVRAAMPGFIAKRLCPQLIIMPPNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYL 202
Query: 68 DITEVCRER 76
+IT+ ER
Sbjct: 203 NITKHLEER 211
>gi|56160406|gb|AAV80817.1| polymerase kappa isoform 1 [Mus musculus]
Length = 533
Score = 197 bits (501), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 105/214 (49%), Positives = 142/214 (66%), Gaps = 1/214 (0%)
Query: 77 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 136
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ + R AVM FI
Sbjct: 286 GTSAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPSRSAVMDFI 345
Query: 137 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 196
LPIRK+ GIGKVTE +L GI TC E+ Q+ +LL +FS ++ +FL + LGLGST
Sbjct: 346 KDLPIRKVSGIGKVTEKMLM-ALGIVTCTELYQQRALLSLLFSETSWHYFLHIALGLGST 404
Query: 197 NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 256
+ + RKS+S ERTFS Y E+ L+ D+QKEGL+GRT+T+KLK +F
Sbjct: 405 DLARDGERKSMSVERTFSEISKTEEQYSLCQELCAELAHDLQKEGLKGRTVTIKLKNVNF 464
Query: 257 EVRTRAVTLQKYISSSEDILKHASVLLKAELPVS 290
EV+TRA T+ IS++E+I A LL+ E+ VS
Sbjct: 465 EVKTRASTVPAAISTAEEIFAIAKELLRTEVNVS 498
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 44/69 (63%), Positives = 55/69 (79%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFGVRAAMPGFIA++LCP+LI VP +F KY S +++ +YDPNFMA SLDEAYL
Sbjct: 142 ARRFGVRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILAEYDPNFMAMSLDEAYL 201
Query: 68 DITEVCRER 76
+IT+ +ER
Sbjct: 202 NITQHLQER 210
>gi|403377318|gb|EJY88651.1| DNA polymerase IV / kappa [Oxytricha trifallax]
Length = 701
Score = 197 bits (501), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 127/360 (35%), Positives = 201/360 (55%), Gaps = 20/360 (5%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR+AMPGFIA+KLCPELIF+P + KY+ S + + + +YDPN+ + DEA L
Sbjct: 211 ARKFGVRSAMPGFIAKKLCPELIFIPNNMKKYSKVSKVFKGILEQYDPNYESLGSDEANL 270
Query: 68 DITEVCRERGIS---GIE-IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF 123
DIT+ ++ GI+ + ++R ++ LTCSAG+A N++LAK+C+D+NKPNGQ
Sbjct: 271 DITDYLNTNNMNDDEGIQKLVFQIREQIFSTTRLTCSAGIACNKMLAKICTDMNKPNGQT 330
Query: 124 VLPNDRMAVMTFISSLPIRKIGGIGKVTEHILR--DVFGINTCEEMLQKGSLLCAVFSHS 181
L D+ ++ F+ L +RKI GIG++TE IL D+F T +++L K +
Sbjct: 331 YLKPDQQTILDFMKVLSVRKIPGIGRMTELILAQLDIF---TLQDVLDKQVQIQIALKER 387
Query: 182 TADFFLSVGLGLGSTNTPQAR---FRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQ 238
T F LG+ S N + +KSIS TF K++++ L+ +
Sbjct: 388 TVYFLFRAALGI-SRNFHEEEDDDCQKSISISETFRPLVTLEQFKDKISQLCTELAERVD 446
Query: 239 KEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS-LRLIGLR 297
K + G ++L++KT F V +++TL+ YI + ED+ ++ LL+ P RLIG++
Sbjct: 447 KRKIAGLNISLEIKTTEFSVLQKSLTLKSYIWTQEDLQLYSHQLLEIMWPSKPARLIGVK 506
Query: 298 VTQF-NEDKVRAPSDPTQKTLTNFMTSGHASKKIVGDQN--SLGSDINDDCLIDDKETSV 354
++ N+ +V+ D + S A +KI +Q L +I DC+ D K T V
Sbjct: 507 LSHLKNQHEVK--KDRNIGGFFDNKISKEAYQKI-NEQKLLKLHEEIKKDCIDDIKCTKV 563
>gi|345868102|ref|ZP_08820098.1| impB/mucB/samB family protein [Bizionia argentinensis JUB59]
gi|344047584|gb|EGV43212.1| impB/mucB/samB family protein [Bizionia argentinensis JUB59]
Length = 367
Score = 196 bits (498), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 119/311 (38%), Positives = 184/311 (59%), Gaps = 10/311 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR+AM G +A++LCP LIF PT F +Y S+ RK+F Y SLDEAYL
Sbjct: 53 ARKFGVRSAMSGMLAQRLCPGLIFAPTRFERYREISEQVRKIFFDYTDLVEPLSLDEAYL 112
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQ-FVLP 126
D+TE ++ S IA+E+R ++ E GLT SAG++ N+ +AK+ SD NKPNGQ V P
Sbjct: 113 DVTE-NKKGNPSASLIAQEIRERIFNEVGLTASAGISINKFIAKIASDYNKPNGQKTVNP 171
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFF 186
D V+ F+ +L IRK G+GKVT + + GI T ++ K + + ++
Sbjct: 172 ED---VLPFLEALDIRKFHGVGKVTAEKMYQL-GIFTGTDLKSKTIEFLSTHFGKSGGYY 227
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLRGR 245
V G+ ++ R RKS+++ERTFS + + KL IAE +S ++K + G+
Sbjct: 228 YHVVRGVHTSEVKPNRIRKSLAAERTFSENLSSEIFMLEKLQHIAEEVSRRLKKSDVAGK 287
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFNED 304
T+TLK+K + F ++TR+ T+ Y+S + I++ A LL + + S+RL+G+ ++ N +
Sbjct: 288 TITLKIKYSDFTLQTRSKTVPYYVSETSIIMETAKDLLYQDSMQNSVRLLGISLSNLNTE 347
Query: 305 KVRAPSDPTQK 315
K + PT K
Sbjct: 348 KPK--KKPTSK 356
>gi|403376374|gb|EJY88163.1| DNA polymerase IV / kappa [Oxytricha trifallax]
Length = 685
Score = 195 bits (496), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 111/310 (35%), Positives = 177/310 (57%), Gaps = 13/310 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR+AMPGFIA+KLCPELIF+P + KY+ S + + + +YDPN+ + DEA L
Sbjct: 312 ARKFGVRSAMPGFIAKKLCPELIFIPNNMKKYSKVSKVFKGILEQYDPNYESLGSDEANL 371
Query: 68 DITEVCRERGIS---GIE-IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF 123
DIT+ ++ GI+ + ++R ++ LTCSAG+A N++LAK+C+D+NKPNGQ
Sbjct: 372 DITDYLNANNMNDDEGIQKLVFQIREQIFSTTRLTCSAGIACNKMLAKICTDMNKPNGQT 431
Query: 124 VLPNDRMAVMTFISSLPIRKIGGIGKVTEHILR--DVFGINTCEEMLQKGSLLCAVFSHS 181
L D ++ F+ L +RKI GIG++TE IL D+F T +++L K +
Sbjct: 432 YLKPDEQTILDFMKVLSVRKIPGIGRMTELILAQLDIF---TLQDVLDKQVQIQIALKER 488
Query: 182 TADFFLSVGLGLGST--NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQK 239
T F LG+ +KSIS TF K+ ++ L+ + K
Sbjct: 489 TVYFLFRAALGISRNFHEEEDDDCQKSISISETFRPLVTLEQFKDKINQLCTELAERVDK 548
Query: 240 EGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS-LRLIGLRV 298
+ G ++L++KT F V +++TL+ YI + ED+ ++ LL+ P RLIG+++
Sbjct: 549 RKVAGLNISLEIKTTEFSVLQKSLTLKSYIWTQEDLQLYSHQLLEIMWPSKPARLIGVKL 608
Query: 299 TQF-NEDKVR 307
+ N+ +V+
Sbjct: 609 SHLKNQHEVK 618
>gi|403376378|gb|EJY88165.1| DNA polymerase IV / kappa [Oxytricha trifallax]
Length = 705
Score = 194 bits (494), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 113/311 (36%), Positives = 180/311 (57%), Gaps = 15/311 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR+AMPGFIA+KLCPELIF+P + KY+ S + + + +YDPN+ + DEA L
Sbjct: 211 ARKFGVRSAMPGFIAKKLCPELIFIPNNMKKYSKVSKVFKGILEQYDPNYESLGSDEANL 270
Query: 68 DITEVCRERGIS---GIE-IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF 123
DIT+ ++ GI+ + ++R ++ LTCSAG+A N++LAK+C+D+NKPNGQ
Sbjct: 271 DITDYLNANNMNDDEGIQKLVFQIREQIFSTTRLTCSAGIACNKMLAKICTDMNKPNGQT 330
Query: 124 VLPNDRMAVMTFISSLPIRKIGGIGKVTEHILR--DVFGINTCEEMLQKGSLLCAVFSHS 181
L D ++ F+ L +RKI GIG++TE IL D+F T +++L K +
Sbjct: 331 YLKPDEQTILDFMKVLSVRKIPGIGRMTELILAQLDIF---TLQDVLDKQVQIQIALKER 387
Query: 182 TADFFLSVGLGLGSTNTPQAR---FRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQ 238
T F LG+ S N + +KSIS TF K+ ++ L+ +
Sbjct: 388 TVYFLFRAALGI-SRNFHEEEDDDCQKSISISETFRPLVTLEQFKDKINQLCTELAERVD 446
Query: 239 KEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS-LRLIGLR 297
K + G ++L++KT F V +++TL+ YI + ED+ ++ LL+ P RLIG++
Sbjct: 447 KRKVAGLNISLEIKTTEFSVLQKSLTLKSYIWTQEDLQLYSHQLLEIMWPSKPARLIGVK 506
Query: 298 VTQF-NEDKVR 307
++ N+ +V+
Sbjct: 507 LSHLKNQHEVK 517
>gi|403377409|gb|EJY88700.1| DNA polymerase IV / kappa [Oxytricha trifallax]
Length = 759
Score = 194 bits (493), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 113/322 (35%), Positives = 176/322 (54%), Gaps = 9/322 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FGVR+ +P FI ++LCPE+ + +F KY SD + V KYD + A LDE +
Sbjct: 229 AREFGVRSGVPSFIGKRLCPEMKLIEPNFDKYRKASDEFKSVLYKYDNDLEAVGLDEVNM 288
Query: 68 DITEVC---RERGISG-IEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF 123
D+TE R+ G I +A ++R + ++ +T S G+A N++LAK+CSD+NKPNGQ
Sbjct: 289 DVTEYLIQHRQDNQEGRINLATKIRKEIQQQTRMTASCGIACNKMLAKICSDMNKPNGQT 348
Query: 124 VLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTA 183
L N ++ F+ LP+RK+ G+GKV E IL + I TC +++ K + F+ +
Sbjct: 349 YLHNSERDILEFMKELPVRKLVGVGKVNEQILLGM-NIKTCSDVIDKAVDIYINFTENAF 407
Query: 184 DFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLR 243
DF + +G+ +A +KS++ +TF V + + KL E+ E L + E L
Sbjct: 408 DFLVKSAIGIARNTHEEAGIKKSLNISQTFQVLSEFIQIKAKLEELCEELEQRAKHEKLS 467
Query: 244 GRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS-LRLIGLRVTQFN 302
GRTLTL+ K F+ + R+ T +YI ED+ K A LL+ P+ R I +++
Sbjct: 468 GRTLTLEFKNDKFKNKQRSYTQNQYIWKKEDLFKIALSLLQDAWPLEPTRQISVKLLNLK 527
Query: 303 EDKVRAPSDPTQKTLTNFMTSG 324
DK + + T+ N T G
Sbjct: 528 NDKGQLSATATE---VNHTTGG 546
>gi|56160418|gb|AAV80823.1| polymerase kappa isoform 7 [Mus musculus]
Length = 495
Score = 194 bits (492), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 102/210 (48%), Positives = 139/210 (66%), Gaps = 1/210 (0%)
Query: 77 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 136
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ + R AVM FI
Sbjct: 286 GTSAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPSRSAVMDFI 345
Query: 137 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 196
LPIRK+ GIGKVTE +L GI TC E+ Q+ +LL +FS ++ +FL + LGLGST
Sbjct: 346 KDLPIRKVSGIGKVTEKMLM-ALGIVTCTELYQQRALLSLLFSETSWHYFLHIALGLGST 404
Query: 197 NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 256
+ + RKS+S ERTFS Y E+ L+ D+QKEGL+GRT+T+KLK +F
Sbjct: 405 DLARDGERKSMSVERTFSEISKTEEQYSLCQELCAELAHDLQKEGLKGRTVTIKLKNVNF 464
Query: 257 EVRTRAVTLQKYISSSEDILKHASVLLKAE 286
EV+TRA T+ IS++E+I A LL+ +
Sbjct: 465 EVKTRASTVPAAISTAEEIFAIAKELLRTD 494
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 44/69 (63%), Positives = 55/69 (79%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFGVRAAMPGFIA++LCP+LI VP +F KY S +++ +YDPNFMA SLDEAYL
Sbjct: 142 ARRFGVRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILAEYDPNFMAMSLDEAYL 201
Query: 68 DITEVCRER 76
+IT+ +ER
Sbjct: 202 NITQHLQER 210
>gi|307110508|gb|EFN58744.1| hypothetical protein CHLNCDRAFT_140443 [Chlorella variabilis]
Length = 864
Score = 193 bits (491), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 92/168 (54%), Positives = 114/168 (67%), Gaps = 1/168 (0%)
Query: 7 SARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAY 66
+ARRFGVR+AMPGFIA KLCP+L+FV DF KYT S R + YDP SLDEA
Sbjct: 132 AARRFGVRSAMPGFIALKLCPDLVFVAPDFAKYTAASQRVRAILRDYDPGLQPGSLDEAA 191
Query: 67 LDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP 126
LD T+ C RG+ G ++A E+R V ++ GLTCS G+APNR+LAK+CSD NKPNGQF L
Sbjct: 192 LDATDCCAARGLGGGQVAAEIRRRVQQDTGLTCSVGIAPNRMLAKICSDRNKPNGQFELE 251
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLL 174
R AVM F+ L IRK+ G+GKVT+ L F + TC ++L LL
Sbjct: 252 PRREAVMDFMRDLSIRKVPGVGKVTQKYL-AAFEVQTCGDLLTHKGLL 298
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 38/55 (69%)
Query: 256 FEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQFNEDKVRAPS 310
++RTRA TL ++IS+++D+ A LL AELP LRL+GLRV+ F + RAP
Sbjct: 298 LQLRTRAQTLPRHISAADDLFAAARRLLLAELPCELRLLGLRVSGFLQAPRRAPG 352
>gi|86143650|ref|ZP_01062026.1| DNA polymerase IV [Leeuwenhoekiella blandensis MED217]
gi|85829693|gb|EAQ48155.1| DNA polymerase IV [Leeuwenhoekiella blandensis MED217]
Length = 367
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 126/309 (40%), Positives = 182/309 (58%), Gaps = 11/309 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR+AM G +ARKLCP+LIFV T F +Y S R+VF +Y SLDEAYL
Sbjct: 53 ARKFGVRSAMAGALARKLCPDLIFVKTRFDRYREISAQIREVFHEYTDLVEPLSLDEAYL 112
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQ-FVLP 126
D+TE ++ S IA+E+R + E+ GL SAG++ N+ +AKV SD+NKPNGQ V P
Sbjct: 113 DVTE-NKKGNPSATLIAKEIRAKIKEKTGLNASAGISINKFIAKVASDVNKPNGQKTVNP 171
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADF 185
+ V+ F+ +L IRK G+GKVT + + GI T ++ K L F S +
Sbjct: 172 EE---VLPFLEALDIRKFYGVGKVTAEKMYQL-GIFTGNDLKSKSLEFLQEKFGKS-GNH 226
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLRG 244
+ +V G+ + R RKS+ +ERTFS + + +L IAE + ++K + G
Sbjct: 227 YYNVVRGIHLSEVKPHRIRKSLGAERTFSENISSEIFMLERLENIAEEIERRLKKSNVAG 286
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFN- 302
+T+TLK+K + F ++TR+ TL YI S E I + A LL E + S+RL+G+ + N
Sbjct: 287 KTVTLKIKYSDFTLKTRSKTLPYYIRSKEVIYETAKELLYQEKMENSVRLLGITLANLNT 346
Query: 303 EDKVRAPSD 311
EDK PS+
Sbjct: 347 EDKREKPSE 355
>gi|170588497|ref|XP_001899010.1| polk-prov protein [Brugia malayi]
gi|158593223|gb|EDP31818.1| polk-prov protein, putative [Brugia malayi]
Length = 358
Score = 192 bits (489), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 113/279 (40%), Positives = 152/279 (54%), Gaps = 60/279 (21%)
Query: 7 SARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAY 66
+ARRFGVR+AMPGFIA+KLCP+L V F KY S + RK+F YDP+F A LDEAY
Sbjct: 72 AARRFGVRSAMPGFIAKKLCPQLRIVHGCFDKYREASSVARKIFRDYDPDFYADGLDEAY 131
Query: 67 LDIT---------------------------------------------EVC-------- 73
LD+T E+C
Sbjct: 132 LDLTTYIQNRFRTGSVEHERIRYMGECVCRLPLVAENEIHHLNKAEITEEICTKCKKLRK 191
Query: 74 --RERGISGIEIAE---ELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPND 128
R+ G++I E E+R V + GLTCSAG+APN LLAKVCSDINKPNGQ+ L N+
Sbjct: 192 CVRDHITFGVDIDEVVREMRFRVEQAVGLTCSAGIAPNSLLAKVCSDINKPNGQYRLLNE 251
Query: 129 RMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLS 188
R AV+TF+ LPIRKI GIG V E +L+ + G+ C + ++ ++ +F+ + ++FL
Sbjct: 252 REAVLTFLKDLPIRKISGIGPVMEAVLKGI-GLEKCVDFYERRGIISLLFTQRSYEYFLR 310
Query: 189 VGLGLGST-NTPQARFRKSISSERTFSVTEDKALLYRKL 226
+ LG+ + Q RKSIS+ERTF T D L ++
Sbjct: 311 IALGISQVFSADQKMRRKSISTERTFHPTGDLGALLEEM 349
>gi|163786797|ref|ZP_02181245.1| hypothetical protein FBALC1_16467 [Flavobacteriales bacterium
ALC-1]
gi|159878657|gb|EDP72713.1| hypothetical protein FBALC1_16467 [Flavobacteriales bacterium
ALC-1]
Length = 369
Score = 192 bits (488), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 121/312 (38%), Positives = 179/312 (57%), Gaps = 32/312 (10%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGV++AM G +A KLCPELIFV TDF +Y+ S RK+F Y SLDEAYL
Sbjct: 53 ARKFGVKSAMSGRLAEKLCPELIFVRTDFERYSEISKRIRKIFYDYTDLVEPLSLDEAYL 112
Query: 68 DITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQ-FVL 125
D+TE + G+ S IA+++R +++E GLT SAG++ N+ +AK+ SD NKPNGQ V
Sbjct: 113 DVTE--NKIGLPSATLIAQKIRQRIFDEVGLTASAGISINKFVAKIASDYNKPNGQKTVN 170
Query: 126 PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADF 185
P D V+ F+ L IRK G+GKV T E+M QKG +AD+
Sbjct: 171 PED---VLQFLEDLDIRKFYGVGKV------------TAEKMYQKGIFTGKDLKSKSADY 215
Query: 186 -----------FLSVGLGLGSTNTPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEML 233
+ + G+ ++ R RKS+++ERTF + + KL +IAE +
Sbjct: 216 LEKNFGKSGRSYYHIVRGIHNSKVKPNRIRKSLAAERTFRENLSSEIFMLEKLRQIAEEV 275
Query: 234 SADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELPVSLR 292
S + K + G+T+TLK+K + F ++TR+ TL Y+S +L+ A LL + +L S+R
Sbjct: 276 SKRLDKSKVAGKTITLKIKYSDFTLQTRSKTLPYYVSEKAIVLETAKDLLYQDKLNNSVR 335
Query: 293 LIGLRVTQFNED 304
L+G+ ++ N D
Sbjct: 336 LLGISLSNLNTD 347
>gi|164660502|ref|XP_001731374.1| hypothetical protein MGL_1557 [Malassezia globosa CBS 7966]
gi|159105274|gb|EDP44160.1| hypothetical protein MGL_1557 [Malassezia globosa CBS 7966]
Length = 525
Score = 192 bits (488), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 116/305 (38%), Positives = 163/305 (53%), Gaps = 7/305 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR+AM F+AR +CP LI VP Y S+ V KYD SLDEAYL
Sbjct: 81 ARQFGVRSAMAEFVARAICPNLIVVPAHMDVYKRSSEAVMAVLAKYDAQLYQRSLDEAYL 140
Query: 68 DITEVCRERGISGI-EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP 126
DIT C E G + ++A +LR V GLT S G+APNRLLAK+ SD KPNG + +
Sbjct: 141 DITSYCAEHGHAHPRDVAAQLRADVLAATGLTVSVGIAPNRLLAKIASDRCKPNGLWYVA 200
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFF 186
R + F+ L +RK+ GIG+V E +L+ I+TC ++ ++ L
Sbjct: 201 PTRQDALAFMHDLSVRKVPGIGQVMERMLQ-AMSIHTCHDLWERRIELSLCIDSYRMLLA 259
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRT 246
++G+G P R+S+ E TF+ T D L+ KL E L D+ RGRT
Sbjct: 260 SALGIGDAHVTLPARTARRSVGRELTFAPTSDPTHLHAKLRATCEQLERDLATLEYRGRT 319
Query: 247 LTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAE-----LPVSLRLIGLRVTQF 301
++L K +FE TRA + +SS +D+ LL+ E +P+ LRLIG+RV+
Sbjct: 320 VSLVGKHDTFERFTRARACPQGVSSFDDLYGVVHALLEQERASFPVPLCLRLIGVRVSSL 379
Query: 302 NEDKV 306
+ +V
Sbjct: 380 IDLQV 384
>gi|402585023|gb|EJW78963.1| polymerase kappa isoform 9, partial [Wuchereria bancrofti]
Length = 301
Score = 191 bits (486), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 117/296 (39%), Positives = 159/296 (53%), Gaps = 66/296 (22%)
Query: 7 SARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAY 66
+ARRFGVR+AMPGFIA+KLCP+L V F KY S + RK+F YDP+F A LDEAY
Sbjct: 6 AARRFGVRSAMPGFIAKKLCPQLKIVHGRFDKYREASSVARKIFRDYDPDFYADGLDEAY 65
Query: 67 LDIT---------------------------------EVCR--ERGIS------------ 79
LD+T E+C + GI+
Sbjct: 66 LDLTIYIQNRLRSGSVEHERIRYMGECVCRLPLVTENEICHLTKAGITEEICTKCKKLRK 125
Query: 80 --------GIEIAE---ELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPND 128
G+++ E E+R V + GLTCSAG+APN LLAKVCSDINKPNGQ+ L N+
Sbjct: 126 CVRDHITFGVDVDEVVREMRFRVEQAVGLTCSAGIAPNSLLAKVCSDINKPNGQYRLLNE 185
Query: 129 RMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLS 188
R AV+TF+ LPIRKI GIG V E +L+ + G+ C ++ ++ ++ +F + ++FL
Sbjct: 186 REAVLTFLKDLPIRKISGIGPVMEAVLKGI-GLEKCADLYERRGIISLLFPQRSYEYFLR 244
Query: 189 VGLGLGSTNTPQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLR 243
+ LG+ + + RKSIS+ERTF T D L + EML K L+
Sbjct: 245 IALGISHVFSADRKMKRKSISTERTFHPTGDLGAL------LEEMLCRYFFKSWLK 294
>gi|163754636|ref|ZP_02161758.1| putative DNA polymerase [Kordia algicida OT-1]
gi|161325577|gb|EDP96904.1| putative DNA polymerase [Kordia algicida OT-1]
Length = 370
Score = 191 bits (485), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 119/301 (39%), Positives = 177/301 (58%), Gaps = 8/301 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR+AM GF+A+K CPELIFV F +Y S RK+F +Y SLDEAYL
Sbjct: 53 ARKFGVRSAMSGFLAKKRCPELIFVRPRFDRYKEISTQIRKIFYEYTDLVEPLSLDEAYL 112
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T+ ++ S IAEE+R + ++ GLT SAG++ N+ +AKV SD NKPNGQ +P
Sbjct: 113 DVTK-NKKGNPSASLIAEEIRAKILKDVGLTASAGISINKFIAKVASDYNKPNGQKTVPP 171
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
+ V+ F+ +L IRK G+GKVT + + GI T +++ K + F+
Sbjct: 172 EE--VLDFLEALDIRKFYGVGKVTAERMYQL-GIFTGKDLKTKDVDFLTEHFGKSGKFYF 228
Query: 188 SVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
+V G+ + R KS+ +ERTFS +T + +L KL IA L ++K + G+
Sbjct: 229 NVVRGIHLSEVKPNRIAKSVGAERTFSDNLTSEIFML-EKLENIANELEKRLKKYAISGK 287
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFNED 304
T+TLK+K + F +TR+ T+ +I+ IL+ A LL E L S+RL+G+ ++ N D
Sbjct: 288 TVTLKIKYSDFTTQTRSKTIAYFIADKSLILETAKELLYQEKLKDSVRLLGISLSNLNTD 347
Query: 305 K 305
K
Sbjct: 348 K 348
>gi|386819686|ref|ZP_10106902.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Joostella marina DSM 19592]
gi|386424792|gb|EIJ38622.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Joostella marina DSM 19592]
Length = 367
Score = 191 bits (485), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 122/314 (38%), Positives = 183/314 (58%), Gaps = 9/314 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR+AM G+ A+K CPELIFV F +Y S R +F +Y SLDEAYL
Sbjct: 53 ARKFGVRSAMSGYQAKKNCPELIFVRPRFDRYKEISTKIRTIFLEYTDLVEPLSLDEAYL 112
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+TE ++ S IA+E+R ++EE GLT SAG++ N+ +AK+ SD NKPNGQ +
Sbjct: 113 DVTE-NKKGNPSASNIAKEIRDRIFEEVGLTASAGISINKFVAKIASDYNKPNGQKTVEP 171
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFF 186
D V+ F+ L IRK G+GKVT + + GI T +++ +K L F S A F+
Sbjct: 172 DE--VIPFLEDLEIRKFYGVGKVTTQKMYSL-GIFTGKDLKEKSVEFLTENFGKSGA-FY 227
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLRGR 245
+V G+ + R KS+ +ERTFS + + +L IA L ++K + G+
Sbjct: 228 YNVVRGIHLSEVKPNRIPKSVGAERTFSENLSSEVFMLERLESIANELERRLKKSKIAGK 287
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFNED 304
T+TLK+K + F+++TR+ TL +I+ IL+ A LL E L S+RL+G+ + N +
Sbjct: 288 TITLKIKYSDFKLQTRSKTLDYFIADKSLILETAKELLYQEKLENSVRLLGISLANLNTE 347
Query: 305 KVRAPSDPTQKTLT 318
K + + P QK ++
Sbjct: 348 KKKKET-PIQKEVS 360
>gi|219112721|ref|XP_002178112.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217410997|gb|EEC50926.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 460
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 124/349 (35%), Positives = 196/349 (56%), Gaps = 42/349 (12%)
Query: 8 ARRFGVRAAMPGFIARKLCPEL-------IFVPTDFTKYTYYSDLTRKVFCKYDPNFMAA 60
AR++GVR+AM G+I +L EL I VP+ F Y S R V +YDP+
Sbjct: 118 ARKYGVRSAMAGWIGDRLVEELSSGTKKLIHVPSRFDLYRTKSHQVRNVLSQYDPHLRCY 177
Query: 61 SLDEAYLDITEVC---------RER---GISGIEIAEELRTSVYE-EAGLTCSAGVAPNR 107
SLDEAY+D+ ER ++G ++ +++R+ V E GLTCSAG+APN
Sbjct: 178 SLDEAYMDLAPYLALKLTRNWDHERISAVLAGSQVLQDMRSRVTEVTGGLTCSAGLAPNF 237
Query: 108 LLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM 167
LL+K+ SD NKPNGQ ++P+D +++ F+ LP RK+ GIG+VT IL FGI T ++
Sbjct: 238 LLSKIASDRNKPNGQCLVPSDHESIIGFLHPLPTRKVSGIGRVTAKILSS-FGIATVADL 296
Query: 168 LQKGSLLCAVFSHSTADFFLSVGLGLGSTN--------TPQARFRKSISSERTFSVTEDK 219
++ SL+ +F ++A+F L +G ++ T +K IS ERTF+ E
Sbjct: 297 YRERSLVRFLFQEASAEFLLRASIGCSGSDERNADDVETDDGPGQKGISRERTFAAKESW 356
Query: 220 ALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQK--YISSSEDILK 277
+ KL EIAE+LS+DM+ + + T+T+K+K SF+ +R+ +L + +I ++ D+
Sbjct: 357 TAINLKLEEIAELLSSDMKHKNIFAHTVTVKVKLRSFDCLSRSRSLGRGVFIQAAADLRP 416
Query: 278 HASVLLKAEL------PVSLRLIGLRVTQFNEDKVRAPSDPTQKTLTNF 320
A LL+ EL ++RL+G+R + F + D QK++ +
Sbjct: 417 IALDLLR-ELKDEFSGSFAVRLLGIRCSSFMGES----HDKAQKSIDTY 460
>gi|149371089|ref|ZP_01890684.1| putative DNA polymerase [unidentified eubacterium SCB49]
gi|149355875|gb|EDM44433.1| putative DNA polymerase [unidentified eubacterium SCB49]
Length = 369
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 122/302 (40%), Positives = 181/302 (59%), Gaps = 10/302 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR+AM G +A KLCP LIFV TDF +Y SD RK+F +Y SLDEAYL
Sbjct: 54 ARKFGVRSAMAGSLAIKLCPHLIFVKTDFERYKEISDRVRKIFFEYTDLVEPLSLDEAYL 113
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+TE ++ S IA E+R + E GL SAG++ N+ +AKV SDINKPNGQ +P
Sbjct: 114 DVTE-NKKGNPSASLIALEIRQKIKERTGLNASAGISINKFIAKVASDINKPNGQKTVPP 172
Query: 128 DRMAVMTFISSLPIRKIGGIGKVT-EHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADF 185
+ V+ F+ L I+K G+GKV E + R GI T ++ K L F S A +
Sbjct: 173 EE--VIPFLEVLDIKKFYGVGKVMKEKMYRH--GIYTGLDLKGKSIEFLSENFGKSGA-Y 227
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLRG 244
+ ++ G+ ++ +R RKS+++ERTFS + + KLA I+E + ++K + G
Sbjct: 228 YYNIVRGIHNSEVKPSRTRKSLAAERTFSENIASEIFMLEKLAPISEEVERRLKKSKVAG 287
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFNE 303
+T+TLK+K + F ++TR+ TL YIS I++ + LL E + S+RL+G+ ++ N
Sbjct: 288 KTVTLKIKYSDFTLQTRSKTLPLYISDKNLIMETVTELLFQEGMKNSVRLLGISMSNLNN 347
Query: 304 DK 305
+K
Sbjct: 348 EK 349
>gi|429750894|ref|ZP_19283893.1| putative DNA polymerase IV [Capnocytophaga sp. oral taxon 332 str.
F0381]
gi|429163655|gb|EKY05858.1| putative DNA polymerase IV [Capnocytophaga sp. oral taxon 332 str.
F0381]
Length = 354
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 117/308 (37%), Positives = 178/308 (57%), Gaps = 7/308 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARR+GVR+A+ G AR+LCP LIFVP F +Y S R +F Y SLDEAYL
Sbjct: 39 ARRYGVRSAISGAQARRLCPHLIFVPPRFERYKEISLQIRGIFHDYTDLVEPLSLDEAYL 98
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T ++ S IA+E+R ++EE GLT SAG++ N+ +AK+ SD KPNGQ +
Sbjct: 99 DVT-TNKKNNPSATLIAQEIRQRIFEETGLTASAGISVNKFVAKIASDFRKPNGQTTITA 157
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
D V F+ L +RK GIGKVT + ++ GI +++ +K ++ +F
Sbjct: 158 DE--VQDFLDVLDVRKFYGIGKVTAQKMYEL-GIFKGKDLREKSLAFLERNFGNSGLYFY 214
Query: 188 SVGLGLGSTNTPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLRGRT 246
+ G+ R RKS+ +E TF+ + + L+ IAE ++ +Q++ + GRT
Sbjct: 215 ELSRGIHRAEVQPFRIRKSVGAEHTFAENFTSEIYMEEALSAIAEDVARRLQRQEVAGRT 274
Query: 247 LTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQF-NED 304
+TLK+K + F V+TR+ TL ++ISS E+I+ +A LL E L S+RL+G+ V+ NE+
Sbjct: 275 ITLKIKYSDFTVQTRSKTLAEFISSQEEIVLYARELLYQERLKESVRLLGISVSHLNNEE 334
Query: 305 KVRAPSDP 312
+ P P
Sbjct: 335 REDTPKKP 342
>gi|224006311|ref|XP_002292116.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220972635|gb|EED90967.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 444
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 108/268 (40%), Positives = 156/268 (58%), Gaps = 8/268 (2%)
Query: 7 SARRFGVRAAMPGFIARKLCPEL-------IFVPTDFTKYTYYSDLTRKVFCKYDPNFMA 59
+AR++GVRAAMPG++ L EL FV +DF Y S R V +YDPN
Sbjct: 177 AARKYGVRAAMPGYLGSTLVKELSGGKETLTFVKSDFDLYKRKSGEVRAVLEEYDPNLSM 236
Query: 60 ASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 119
SLDEAY+DI + + ++ +R V GLTCSAG+A N LLAKV SD+NKP
Sbjct: 237 YSLDEAYMDIGPYLKILLSTAQQLLNSIRQRVKNATGLTCSAGLASNFLLAKVASDVNKP 296
Query: 120 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFS 179
NGQ + + ++ F + L IRKI GIG+VTE +LR V + T +++ + + +F
Sbjct: 297 NGQCFVGSSEAEILAFANPLSIRKISGIGRVTEKMLRGVCEVETVKDLYDHRAEVYFLFK 356
Query: 180 HSTADFFLSVGLGLGSTNT-PQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQ 238
++A+ + +G T +A RK IS ERTFS T + L KL I + L D++
Sbjct: 357 PASANLMMRASIGYAETGKHHEATTRKGISHERTFSPTSSWSDLCNKLETIVQALVHDLK 416
Query: 239 KEGLRGRTLTLKLKTASFEVRTRAVTLQ 266
+ L+ +T+TLK+K A+F++ TRAVTL+
Sbjct: 417 QRNLKPKTITLKVKLANFDILTRAVTLE 444
>gi|372208892|ref|ZP_09496694.1| DNA polymerase IV 2 [Flavobacteriaceae bacterium S85]
Length = 348
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 113/301 (37%), Positives = 178/301 (59%), Gaps = 10/301 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGV++AM +A+K+CPELIFV +DF +Y S+L R +F +Y SLDEAYL
Sbjct: 39 ARKFGVKSAMASSLAKKMCPELIFVRSDFARYKEISNLVRSIFREYTDLIEPLSLDEAYL 98
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T ++ S IA+E+R + E+ GL SAG+APN+ +AK+ SDINKPNGQ +
Sbjct: 99 DVT-FNKKECPSATLIAQEIRIKIKEQTGLNASAGIAPNKFVAKIASDINKPNGQKTIAP 157
Query: 128 DRMAVMTFISSLPIRKIGGIG-KVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFF 186
D V+ F+ LPIRK G+G K TE + R GI T ++ K S A +
Sbjct: 158 DE--VIDFLEVLPIRKFYGVGKKTTEKMYR--LGIFTGADLKSKSIAFLEQHFKSAAQHY 213
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTF--SVTEDKALLYRKLAEIAEMLSADMQKEGLRG 244
S+ G+ ++ R RKS+ +E T+ ++T + +L KL +++ + +QK ++G
Sbjct: 214 YSIVRGIHNSPVKPFRTRKSVGAEHTYLENLTSEVFML-EKLQQLSREIEGRLQKNQVKG 272
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELPVSLRLIGLRVTQFNE 303
RT+TLK+K + F TR+ TL ++S+ + I K LL + ++ S+RL+G+ + +
Sbjct: 273 RTVTLKIKYSDFSQTTRSKTLDTFVSTHQQIYKVIKELLYQQKVSNSVRLLGISINNLDN 332
Query: 304 D 304
+
Sbjct: 333 E 333
>gi|154271913|ref|XP_001536809.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150408796|gb|EDN04252.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 373
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 95/228 (41%), Positives = 136/228 (59%), Gaps = 10/228 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG R+ M GFIARKLCP+LI +P ++ KYT ++ R + +DP F +AS+DEAYL
Sbjct: 149 ARKFGCRSGMAGFIARKLCPDLILIPQNYQKYTAKAEEIRAILSSFDPQFQSASIDEAYL 208
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
+IT C I LR+ V E+ + SAG+APN +AK+CS+ NKPNGQ +PN
Sbjct: 209 NITGYCATNEIEPEVAVRRLRSQVMEQTKVAVSAGIAPNARIAKICSNWNKPNGQHYVPN 268
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
DR +M F+S +P+RKI G+G+V E L + GI C ++ ++ +F F +
Sbjct: 269 DRSIIMKFMSEIPVRKINGVGRVFEREL-EAIGIKNCSDIFTHRGVILPLFGEKCYKFLM 327
Query: 188 SVGLGLGSTNT--PQARFRKSISSERTFSVTEDKALLYRKLAEIAEML 233
LGLGST + RKS+ +ERTF +D +A++ EML
Sbjct: 328 QCYLGLGSTKIRPVEESERKSVGTERTFRDIDD-------IADLQEML 368
>gi|332292065|ref|YP_004430674.1| DNA-directed DNA polymerase [Krokinobacter sp. 4H-3-7-5]
gi|332170151|gb|AEE19406.1| DNA-directed DNA polymerase [Krokinobacter sp. 4H-3-7-5]
Length = 370
Score = 189 bits (481), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 126/314 (40%), Positives = 188/314 (59%), Gaps = 13/314 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++GVR+AM G +ARKLCP+LIFV T+F +Y S R VF ++ SLDEAYL
Sbjct: 52 ARKYGVRSAMAGALARKLCPDLIFVKTNFERYREVSAQIRSVFHEFTDLVEPLSLDEAYL 111
Query: 68 DITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP 126
D+TE + G+ S IA +R + E+ GL SAG++ N+ +AKV SDINKPNGQ +P
Sbjct: 112 DVTE--NKVGMPSATVIASWIRQRIKEKTGLNASAGISINKFIAKVASDINKPNGQKTIP 169
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM-LQKGSLLCAVFSHSTADF 185
+ V+TF+ L IRK GIGK T + + GI T +M ++ L F S A +
Sbjct: 170 PEE--VITFLEELDIRKFYGIGKKTAEKMY-LHGIFTGMDMKMKSKEYLSDNFGKSGA-Y 225
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLR 243
+ + G+ + R RKS+++ERTFS +T + +L KL IAE + + K +
Sbjct: 226 YYDIVRGIQYSEVRPNRIRKSLAAERTFSENITSEIFML-EKLDIIAEEVEKRLAKSQVA 284
Query: 244 GRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFN 302
G+T+TLK+K + F ++TR+ TL+ Y+ S E IL+ A LL E + S+RL+G+ ++ N
Sbjct: 285 GKTITLKIKYSDFTLQTRSKTLELYVRSKEIILETAKDLLYQEKMKNSVRLLGISLSNLN 344
Query: 303 -EDKVRAPSDPTQK 315
ED+ + ++ K
Sbjct: 345 TEDRKKKDAEKAVK 358
>gi|295132163|ref|YP_003582839.1| DNA polymerase IV 2 [Zunongwangia profunda SM-A87]
gi|294980178|gb|ADF50643.1| DNA polymerase IV 2 [Zunongwangia profunda SM-A87]
Length = 354
Score = 189 bits (479), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 121/311 (38%), Positives = 179/311 (57%), Gaps = 13/311 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR+AM IA++ CP++IFV F +Y S R +F +Y SLDEAYL
Sbjct: 39 ARKFGVRSAMSSVIAKRNCPDIIFVKARFDRYREISQQIRSIFFEYTDLVEPLSLDEAYL 98
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQ-FVLP 126
D+TE ++ S IA E+R + ++ GL SAG++ N+ +AKV SDINKPNGQ V P
Sbjct: 99 DVTE-NKKGNPSATMIAREIREKIKQKTGLNASAGISVNKFIAKVASDINKPNGQKTVNP 157
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVT-EHILRDVFGINTCEEMLQKGSLLCAVFSHSTADF 185
+ V+ F+ L IRK G+GKVT E + R GI T +++ K A +
Sbjct: 158 EE---VLDFLEQLEIRKFYGVGKVTAEKMYR--LGIFTGKDLKSKSEAYLADHFGKHGPY 212
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLRG 244
+ +V G+ + R RKS+ +ERTFS + + KL IAE + +QK + G
Sbjct: 213 YYNVVRGIHESEVKPNRMRKSLGAERTFSENISSEIFMLEKLTNIAEEIERRLQKSKVAG 272
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFNE 303
+T+TLK+K + F ++TR+ T+ +ISS E IL+ A LL E + S+RL+G+ ++ N
Sbjct: 273 KTVTLKIKYSDFTLQTRSKTISYFISSKELILEMAKELLYQEKMKDSVRLLGISLSNLNT 332
Query: 304 DKVRAPSDPTQ 314
D +PS T+
Sbjct: 333 D---SPSVKTK 340
>gi|345304664|ref|XP_003428244.1| PREDICTED: DNA polymerase kappa isoform 2 [Ornithorhynchus
anatinus]
Length = 882
Score = 189 bits (479), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 114/254 (44%), Positives = 160/254 (62%), Gaps = 13/254 (5%)
Query: 77 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 136
G S ++ E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ + R AVM FI
Sbjct: 299 GTSAEDVVREIRFRIEQKTTLTASAGIAPNMMLAKVCSDKNKPNGQYRILPTRQAVMDFI 358
Query: 137 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 196
LPIRK+ GIGKVTE +L+ GI TC ++ Q+ +LL +FS S+ FL + LGLGST
Sbjct: 359 KDLPIRKVSGIGKVTEKMLK-ALGITTCTDLYQQRALLSLLFSESSWHNFLHISLGLGST 417
Query: 197 NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 256
+ + RKS+S ERTFS Y E+ L+ D+QKE L+G+T+TLKLK +F
Sbjct: 418 HLEKDGERKSMSIERTFSEISKAEEQYSLCQELCNDLAQDLQKELLKGKTVTLKLKNVNF 477
Query: 257 EVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQF-NEDKVRAP 309
EVRTRA T+ +S+ E+I A LL+ E+ P+ LRL+G+R++ F EDK
Sbjct: 478 EVRTRASTVSSGVSTGEEIYAMAKELLRTEIEADFPHPLRLRLMGVRISGFLLEDKRHQ- 536
Query: 310 SDPTQKTLTNFMTS 323
Q+++ +F+ S
Sbjct: 537 ----QRSIISFLQS 546
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 45/69 (65%), Positives = 53/69 (76%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFGVRAAMPGFIA++LCP L VPT+F KY S R++ +YDPNFMA SLDEAYL
Sbjct: 143 ARRFGVRAAMPGFIAKRLCPHLTIVPTNFDKYREVSKEVREILTEYDPNFMAMSLDEAYL 202
Query: 68 DITEVCRER 76
+IT+ ER
Sbjct: 203 NITKHLEER 211
>gi|300776039|ref|ZP_07085898.1| DNA-directed DNA polymerase [Chryseobacterium gleum ATCC 35910]
gi|300505172|gb|EFK36311.1| DNA-directed DNA polymerase [Chryseobacterium gleum ATCC 35910]
Length = 365
Score = 189 bits (479), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 117/300 (39%), Positives = 178/300 (59%), Gaps = 12/300 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++GVR+AMP A++ CP+LIFVP F +Y S R++F +Y SLDEAYL
Sbjct: 52 ARKYGVRSAMPSKTAKEKCPQLIFVPPRFARYKEISKKIREIFYEYTDLVEPLSLDEAYL 111
Query: 68 DITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP 126
D+TE ++G+ S IA+E+R ++E+ GLT SAG++ N+ LAKV SDINKPNGQ +
Sbjct: 112 DVTE--NKKGMESANLIAKEIRQKIFEQTGLTASAGISVNKFLAKVASDINKPNGQKTIH 169
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL--LCAVFSHSTAD 184
D+M F+ LP+ K G+GKVT + + + GI ++ L+K SL L +F S
Sbjct: 170 PDKME--EFLEELPVEKFYGVGKVTANKMFSL-GIYKGKD-LKKKSLEDLIRIFGKSGQH 225
Query: 185 FFLSVGLGLGSTNTPQARFRKSISSERT-FSVTEDKALLYRKLAEIAEMLSADMQKEGLR 243
++ +V G+ ++ R +KS++ ERT F D+ + KL +A+ L +QK +
Sbjct: 226 YY-NVVRGIHTSEVKPHRIQKSVAVERTFFEDLLDEQQINEKLESLAQELHQRLQKNNIL 284
Query: 244 GRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFN 302
GRTLTLK+K F + TR++T ++Y SS E L + ++RL+GL ++ N
Sbjct: 285 GRTLTLKIKYKDFSLFTRSITKEEYFSSPEQYFTTGKKLWELRPFDKAVRLLGLSLSHLN 344
>gi|149408451|ref|XP_001512578.1| PREDICTED: DNA polymerase kappa isoform 1 [Ornithorhynchus
anatinus]
Length = 873
Score = 188 bits (478), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 114/254 (44%), Positives = 160/254 (62%), Gaps = 13/254 (5%)
Query: 77 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 136
G S ++ E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ + R AVM FI
Sbjct: 290 GTSAEDVVREIRFRIEQKTTLTASAGIAPNMMLAKVCSDKNKPNGQYRILPTRQAVMDFI 349
Query: 137 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 196
LPIRK+ GIGKVTE +L+ GI TC ++ Q+ +LL +FS S+ FL + LGLGST
Sbjct: 350 KDLPIRKVSGIGKVTEKMLK-ALGITTCTDLYQQRALLSLLFSESSWHNFLHISLGLGST 408
Query: 197 NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 256
+ + RKS+S ERTFS Y E+ L+ D+QKE L+G+T+TLKLK +F
Sbjct: 409 HLEKDGERKSMSIERTFSEISKAEEQYSLCQELCNDLAQDLQKELLKGKTVTLKLKNVNF 468
Query: 257 EVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQF-NEDKVRAP 309
EVRTRA T+ +S+ E+I A LL+ E+ P+ LRL+G+R++ F EDK
Sbjct: 469 EVRTRASTVSSGVSTGEEIYAMAKELLRTEIEADFPHPLRLRLMGVRISGFLLEDKRHQ- 527
Query: 310 SDPTQKTLTNFMTS 323
Q+++ +F+ S
Sbjct: 528 ----QRSIISFLQS 537
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 45/69 (65%), Positives = 53/69 (76%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFGVRAAMPGFIA++LCP L VPT+F KY S R++ +YDPNFMA SLDEAYL
Sbjct: 143 ARRFGVRAAMPGFIAKRLCPHLTIVPTNFDKYREVSKEVREILTEYDPNFMAMSLDEAYL 202
Query: 68 DITEVCRER 76
+IT+ ER
Sbjct: 203 NITKHLEER 211
>gi|393779062|ref|ZP_10367315.1| ImpB/MucB/SamB family protein [Capnocytophaga sp. oral taxon 412
str. F0487]
gi|392610848|gb|EIW93608.1| ImpB/MucB/SamB family protein [Capnocytophaga sp. oral taxon 412
str. F0487]
Length = 353
Score = 187 bits (476), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 113/300 (37%), Positives = 176/300 (58%), Gaps = 8/300 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR+A+ G ARKLCP LIFV F +Y S R +F +Y SLDEAYL
Sbjct: 39 ARKFGVRSAISGAQARKLCPHLIFVKPRFERYKQISMQIRAIFHEYTDLVEPLSLDEAYL 98
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T V ++ S IA+E+R ++++ GLT SAG++ N+ +AK+ SD KPNGQ +
Sbjct: 99 DVT-VNKKGNPSATLIAQEIRQRIFQQTGLTASAGISVNKFIAKIASDYRKPNGQTTITE 157
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
V F+ L +RK GIGKVT + + GI + +K ++ +++
Sbjct: 158 SE--VQNFLDRLDVRKFYGIGKVTAEKMYQL-GIFKGRNLREKSLEFLERNFGNSGNYYY 214
Query: 188 SVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
+ G+ + R RKS+ +E TF+ +T + +L R+L IAE ++ + K+ + G+
Sbjct: 215 ELARGIHRSEVQPFRIRKSVGAEETFAENLTSEVYML-RELDHIAEDVARRLDKQQVAGK 273
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV-SLRLIGLRVTQFNED 304
T+TLK+K ++F V+TR+ TL+ +ISS +DIL H LL E P S+RL+G+ ++ N +
Sbjct: 274 TVTLKIKYSNFTVQTRSKTLKDFISSKDDILLHIKELLYQERPAESVRLLGISLSHLNNE 333
>gi|332879162|ref|ZP_08446863.1| DNA polymerase IV [Capnocytophaga sp. oral taxon 329 str. F0087]
gi|332682962|gb|EGJ55858.1| DNA polymerase IV [Capnocytophaga sp. oral taxon 329 str. F0087]
Length = 353
Score = 187 bits (476), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 112/301 (37%), Positives = 182/301 (60%), Gaps = 10/301 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++GV +AM G +ARK CP LIFVP F +Y S R +F +Y SLDEAYL
Sbjct: 39 ARQYGVHSAMSGVLARKRCPHLIFVPPRFERYKEISRHIRSIFHRYTDLVEPLSLDEAYL 98
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T + S IA+E+R +++ E GLT SAG++ N+ +AK+ SD+NKPNGQ +
Sbjct: 99 DVTH-NKVGNPSATLIAQEIRQAIFAETGLTASAGISINKFIAKIASDVNKPNGQKTVTQ 157
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFF 186
D + F+ +L ++K GIGKVT + G+ T +++ QK + L F +S ++
Sbjct: 158 DE--IQDFLDALNVKKFYGIGKVTAEKMY-ALGVFTGKDLRQKSLAFLERNFGNSGKHYY 214
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRG 244
+ G+ + R RKS+ +E+TF+ +T + +L ++L IA ++ + ++ + G
Sbjct: 215 -QLARGIHNGEVQPFRIRKSVGAEQTFAENLTSEIYML-KELDSIASEVAMRLAQQKVAG 272
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFNE 303
+TLT+K+K + F ++TR+ TL+ YISS E+I+ + S LL + L S+RL+G+ ++ N
Sbjct: 273 KTLTIKIKYSDFSIQTRSKTLKDYISSKEEIMLYISELLYQDRLSDSVRLLGISLSHLNN 332
Query: 304 D 304
D
Sbjct: 333 D 333
>gi|85816953|gb|EAQ38137.1| DNA polymerase IV [Dokdonia donghaensis MED134]
Length = 370
Score = 187 bits (476), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 123/304 (40%), Positives = 184/304 (60%), Gaps = 13/304 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++GVR+AM G +ARKLCP+LIFV T+F +Y S R VF ++ SLDEAYL
Sbjct: 52 ARKYGVRSAMAGALARKLCPDLIFVKTNFERYREVSAQIRSVFHEFTDLVEPLSLDEAYL 111
Query: 68 DITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP 126
D+TE + G+ S IA +R + E+ GL SAG++ N+ +AKV SDINKPNGQ +P
Sbjct: 112 DVTE--NKVGMPSATVIASWIRQCIKEKTGLNASAGISINKFIAKVASDINKPNGQKTIP 169
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM-LQKGSLLCAVFSHSTADF 185
+ V+TF+ L I+K GIGK T + + GI T ++ L+ L F S A +
Sbjct: 170 PEE--VITFLEELDIKKFYGIGKKTAEKMY-LHGIFTGMDLKLKSKEYLSDNFGKSGA-Y 225
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTF--SVTEDKALLYRKLAEIAEMLSADMQKEGLR 243
+ + G+ + R RKS+++ERTF ++T + +L KL IAE + ++K +
Sbjct: 226 YYDIVRGIQHSEVKPNRIRKSLAAERTFRENITSEIFML-EKLEHIAEEVERRLEKSKVA 284
Query: 244 GRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFN 302
G+T+TLK+K + F ++TR+ TL Y+ S E IL+ A LL E + S+RL+G+ ++ N
Sbjct: 285 GKTITLKIKYSDFTLQTRSKTLDLYVRSKEIILETAKDLLYQEKMKNSVRLLGISLSNLN 344
Query: 303 -EDK 305
ED+
Sbjct: 345 TEDR 348
>gi|260061439|ref|YP_003194519.1| DNA polymerase IV [Robiginitalea biformata HTCC2501]
gi|88785571|gb|EAR16740.1| DNA polymerase IV [Robiginitalea biformata HTCC2501]
Length = 366
Score = 187 bits (476), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 122/307 (39%), Positives = 175/307 (57%), Gaps = 10/307 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FGVR+AM G AR+LCPEL+FV F +Y S R +F +Y SLDEAYL
Sbjct: 53 ARTFGVRSAMSGVQARRLCPELVFVKPRFDRYREVSRQIRGIFLEYTDLVEPLSLDEAYL 112
Query: 68 DITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP 126
D+T +G+ S IA E+R + EE GLT SAG++ N+ +AKV SD NKPNGQ +P
Sbjct: 113 DVT--ANRKGMPSATLIAREIRRRILEETGLTASAGISVNKFIAKVASDFNKPNGQKTVP 170
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM-LQKGSLLCAVFSHSTADF 185
+ V F+ SL IRK G+GKVT + + GI T ++ Q L F S +
Sbjct: 171 PE--DVQEFLESLEIRKFHGVGKVTAEKM-NALGIFTGADLRRQSEHFLTGHFGKSGHHY 227
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLRG 244
+ V G+ + +R KS+ +ERTFS + + KL +IAE LS ++ G
Sbjct: 228 YRVV-RGVHDSPVQPSRVPKSLGAERTFSENLSSEVFMVEKLTKIAEELSRRLRTRNRSG 286
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFNE 303
+T+TLK++ + F ++TR+ TL +YI S E IL A LL + L S+RL+G+ ++ +
Sbjct: 287 KTITLKIRYSDFSLQTRSRTLAEYIDSPERILAAARDLLYQQPLENSVRLLGISLSNLDT 346
Query: 304 DKVRAPS 310
+K + S
Sbjct: 347 EKEKTES 353
>gi|126662622|ref|ZP_01733621.1| DNA polymerase IV [Flavobacteria bacterium BAL38]
gi|126626001|gb|EAZ96690.1| DNA polymerase IV [Flavobacteria bacterium BAL38]
Length = 353
Score = 187 bits (474), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 122/315 (38%), Positives = 182/315 (57%), Gaps = 11/315 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR+A+ G A+KLCP+LIFVP F +Y S RK+F Y SLDEAYL
Sbjct: 39 ARKFGVRSAISGIQAKKLCPDLIFVPPRFDRYKEISKQIRKIFLDYTDLVEPLSLDEAYL 98
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+TE ++ S IA+E+R ++EE GLT SAG++ N+ +AK+ SD NKPNGQ +
Sbjct: 99 DVTE-NKKGNPSATLIAQEIRKRIFEEVGLTASAGISANKFVAKIASDYNKPNGQKTVNP 157
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFF 186
D + F+ L ++K G+GKVT + + GI T ++ QK L F +S +F
Sbjct: 158 DE--IEPFLEKLDVKKFYGVGKVTAEKMYQL-GIFTGYDLKQKSVEYLENHFGNSGLHYF 214
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLRGR 245
+ G+ ++ R KS+ +ERTF + + +L IA+ L +QK + G+
Sbjct: 215 -QIVRGIHNSAVKPNRKIKSVGAERTFGENLSSEIFMEERLQSIAKELEKRLQKSKISGK 273
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQF-NE 303
T+TLK+K + F ++TR+ TL ++S I+ A LL E L S+RL+G+ V NE
Sbjct: 274 TITLKIKYSDFTLQTRSKTLPYFVSDKNIIVDVAKDLLYQERLKNSVRLLGISVHNLNNE 333
Query: 304 DKVRAPSDPTQKTLT 318
+K R P TQK+++
Sbjct: 334 EKTRIPL--TQKSVS 346
>gi|408491441|ref|YP_006867810.1| DNA polymerase IV DinP [Psychroflexus torquis ATCC 700755]
gi|408468716|gb|AFU69060.1| DNA polymerase IV DinP [Psychroflexus torquis ATCC 700755]
Length = 365
Score = 187 bits (474), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 119/302 (39%), Positives = 181/302 (59%), Gaps = 10/302 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGV++AM G +A +LCP LIFV F +Y S + RKVF +Y SLDEAYL
Sbjct: 53 ARKFGVKSAMSGRLATRLCPHLIFVKPRFERYKEISQIIRKVFFEYTDLVEPLSLDEAYL 112
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T V + S +A E+R + + GL SAG++ N+ +AK+ SDINKPNGQ +P
Sbjct: 113 DVT-VNKFNYPSATILAREIREKIKDRTGLNASAGISINKFIAKIASDINKPNGQKTIPP 171
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM-LQKGSLLCAVFSHSTADFF 186
+ V+ F+ +L IRK G+GKVT+ + + GI T ++ L+ L F S +F
Sbjct: 172 E--DVIDFLETLDIRKFHGVGKVTQEKMYGL-GIFTGVDLKLKTLEYLQDHFGKSGLHYF 228
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLRGR 245
+V G+ ++ +R RKS+ +ERTFS + + KL +IAE + ++ + G+
Sbjct: 229 -NVVRGVHLSDVKPSRIRKSLGAERTFSKNISSEIYMLEKLEDIAEEVERRLKGSRVAGK 287
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFNE 303
T+TLKLKT+ F ++TR+ TL+ +ISS I++ LL E P+ S+RL+G+ ++ N
Sbjct: 288 TITLKLKTSDFNIQTRSKTLKFFISSKALIMEETKALLFQE-PIKDSIRLLGISLSNLNT 346
Query: 304 DK 305
DK
Sbjct: 347 DK 348
>gi|298207148|ref|YP_003715327.1| DNA polymerase IV [Croceibacter atlanticus HTCC2559]
gi|83849783|gb|EAP87651.1| DNA polymerase IV [Croceibacter atlanticus HTCC2559]
Length = 368
Score = 187 bits (474), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 120/308 (38%), Positives = 184/308 (59%), Gaps = 10/308 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FGVR+AM G A++LCPELIFV T+FT+Y S R++F +Y SLDEAYL
Sbjct: 53 ARVFGVRSAMSGAQAQRLCPELIFVKTNFTRYKECSQQIREIFYEYTDKVEPLSLDEAYL 112
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+TE ++ S IA+E+R + + GL SAG++ N+ +AKV SDINKPNGQ +
Sbjct: 113 DVTE-NKKGNPSATLIAKEIREKIKAKTGLNASAGISINKFIAKVASDINKPNGQKTINP 171
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
+ V+ F+ +L IRK GIGKVT + + GI T ++ K + ++
Sbjct: 172 EE--VIPFLETLDIRKFYGIGKVTAEKMY-LHGIFTGNDLKSKSLEYLEEHFGKSGTYYY 228
Query: 188 SVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
+ G+ ++ R RKS+ +ERTFS +T + ++ R L IAE + ++K + G+
Sbjct: 229 HIVRGIHNSEVKPHRTRKSLGAERTFSENITSELFMMER-LEHIAEEIERRLEKSNVAGK 287
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELPVSLRLIGLRVTQFN-E 303
T+TLK+K + F ++TR+ TL Y+ E IL+ A LL + ++ S+RL+G+ ++ N E
Sbjct: 288 TVTLKIKYSDFTLQTRSKTLPYYLRKKEVILETAKELLYQDDMKNSVRLLGISLSNLNTE 347
Query: 304 DKVRA-PS 310
D+ +A PS
Sbjct: 348 DRPKAKPS 355
>gi|420148930|ref|ZP_14656115.1| ImpB/MucB/SamB family protein [Capnocytophaga sp. oral taxon 335
str. F0486]
gi|394754419|gb|EJF37809.1| ImpB/MucB/SamB family protein [Capnocytophaga sp. oral taxon 335
str. F0486]
Length = 353
Score = 187 bits (474), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 113/300 (37%), Positives = 177/300 (59%), Gaps = 8/300 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR+A+ G ARKLCP LIFV F +Y S R +F +Y SLDEAYL
Sbjct: 39 ARKFGVRSAISGAQARKLCPHLIFVKPRFERYKQISMQIRAIFHEYTDLVEPLSLDEAYL 98
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T V ++ S IA+E+R ++++ GLT SAG++ N+ +AK+ SD KPNGQ +
Sbjct: 99 DVT-VNKKSNPSATLIAQEIRQRIFQQTGLTASAGISVNKFIAKIASDYRKPNGQTTITE 157
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
V F+ L +RK GIGKVT + + GI +++ +K ++ ++
Sbjct: 158 --AEVQDFLDRLDVRKFYGIGKVTAEKMYQL-GIFKGKDLREKSLEFLERNFGNSGHYYY 214
Query: 188 SVGLGLGSTNTPQARFRKSISSERTF--SVTEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
+ G+ + R RKS+ +E TF ++T + +L R+L IAE ++ + K+ + G+
Sbjct: 215 ELSRGIHRSEVQPFRIRKSVGAEETFVENLTSEVYML-RELDHIAEDVARRLDKQQVAGK 273
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV-SLRLIGLRVTQFNED 304
T+TLK+K ++F V+TR+ TL+ +ISS +DIL H LL E P S+RL+G+ ++ N +
Sbjct: 274 TVTLKIKYSNFTVQTRSKTLKDFISSKDDILLHIKELLYQERPAESVRLLGISLSHLNNE 333
>gi|256819502|ref|YP_003140781.1| DNA-directed DNA polymerase [Capnocytophaga ochracea DSM 7271]
gi|256581085|gb|ACU92220.1| DNA-directed DNA polymerase [Capnocytophaga ochracea DSM 7271]
Length = 353
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 113/300 (37%), Positives = 176/300 (58%), Gaps = 8/300 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR+A+ G ARKLCP LIFV F +Y S R +F +Y SLDEAYL
Sbjct: 39 ARKFGVRSAISGAQARKLCPHLIFVKPRFERYKQISMQIRAIFHEYTDLVEPLSLDEAYL 98
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T V ++ S IA+E+R ++++ GLT SAG++ N+ +AK+ SD KPNGQ +
Sbjct: 99 DVT-VNKKSNPSATLIAQEIRQRIFQQTGLTASAGISVNKFIAKIASDYRKPNGQTTITE 157
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
V F+ L +RK GIGKVT + + GI ++ +K ++ ++
Sbjct: 158 --AEVQDFLDRLDVRKFYGIGKVTAEKMYQL-GIFKGRDLREKSLEFLERNFGNSGHYYY 214
Query: 188 SVGLGLGSTNTPQARFRKSISSERTF--SVTEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
+ G+ + R RKS+ +E TF ++T + +L R+L IAE ++ + K+ + G+
Sbjct: 215 ELSRGIHRSEVQPFRIRKSVGAEETFPENLTSEVYML-RELDHIAEDVARRLDKQQVAGK 273
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV-SLRLIGLRVTQFNED 304
T+TLK+K ++F V+TR+ TL+ +ISS +DIL H LL E P S+RL+G+ ++ N +
Sbjct: 274 TVTLKIKYSNFTVQTRSKTLKDFISSKDDILLHIKELLYQERPAESVRLLGISLSHLNNE 333
>gi|154413235|ref|XP_001579648.1| ImpB/MucB/SamB family protein [Trichomonas vaginalis G3]
gi|121913857|gb|EAY18662.1| ImpB/MucB/SamB family protein [Trichomonas vaginalis G3]
Length = 592
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 107/303 (35%), Positives = 168/303 (55%), Gaps = 4/303 (1%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR+ M FIA +LCP L V + + Y +YS + RK+F KYD ++++ LDEA L
Sbjct: 131 ARKFGVRSGMAVFIALQLCPHLKIVESHYELYKHYSSIVRKIFEKYDSHYISFGLDEASL 190
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D++E + ++IA+ ++ V+E+ LT S G+A LAK+ SD+NKPNG F + +
Sbjct: 191 DLSEHVKLDYEKAMDIAKNIQKEVFEQTKLTISCGIAITPQLAKIASDVNKPNGIFEIKH 250
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
DR + + FIS LPIRKI GIG V E +L + GI T ++++ K + L F
Sbjct: 251 DRESTLDFISKLPIRKIPGIGGVAEQLLHGI-GITTMKDVMDKKTDLWICMRPLFCQFIF 309
Query: 188 SVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTL 247
S LG+ R ++SIS ERTF T D+ + + ++ + +Q+ + R +
Sbjct: 310 SACLGINRQTFGVTRHQQSISKERTFDNTNDRVFMEEIIEKLCMEVCKLLQEMNVLCRNV 369
Query: 248 TLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELP---VSLRLIGLRVTQFNED 304
T+K K +SF+ TR ++ + DI +L EL V RL+G+R Q +
Sbjct: 370 TVKFKDSSFQTITRCLSFDHDTNKIFDIFCACVKILNDELRSRYVKYRLLGVRCGQLSTP 429
Query: 305 KVR 307
+ +
Sbjct: 430 RAK 432
>gi|301118068|ref|XP_002906762.1| DNA polymerase kappa, putative [Phytophthora infestans T30-4]
gi|262108111|gb|EEY66163.1| DNA polymerase kappa, putative [Phytophthora infestans T30-4]
Length = 601
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 105/248 (42%), Positives = 134/248 (54%), Gaps = 31/248 (12%)
Query: 7 SARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAY 66
+AR+FGVRAAMPGFI ++LCP+L FVP + KY + R VF +YDP+F A SLDEA
Sbjct: 125 AARQFGVRAAMPGFIGKELCPDLHFVPVNMKKYAGVAAEIRAVFAEYDPDFEAFSLDEAC 184
Query: 67 LDITEVCRE-----------------------------RGISGIEIAEELRTSVYEEAGL 97
LD+T+ E R + ELR V++ L
Sbjct: 185 LDLTDYIAENWQKYISDAMDEIESKESDKEEWASTASGRAAIAAVVVRELRKKVFDCTQL 244
Query: 98 TCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRD 157
T SAG+A N +LAK+CSD+NKPNGQ+VLP R VMTFI LP+RKIGGIGKV E L +
Sbjct: 245 TASAGIAVNSMLAKICSDMNKPNGQYVLPFSRERVMTFIRELPVRKIGGIGKVMEKTLNE 304
Query: 158 VFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTE 217
+ T ++ + + +FS TA + L LG+ Q RKS S ERTF
Sbjct: 305 ALDVQTGGDLFDQRGKIAHLFSGKTAMWLLQTSLGVQERREKQE--RKSFSRERTFKRLS 362
Query: 218 DKALLYRK 225
D L K
Sbjct: 363 DPKQLEEK 370
>gi|88801750|ref|ZP_01117278.1| DNA polymerase IV [Polaribacter irgensii 23-P]
gi|88782408|gb|EAR13585.1| DNA polymerase IV [Polaribacter irgensii 23-P]
Length = 360
Score = 186 bits (472), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 115/303 (37%), Positives = 183/303 (60%), Gaps = 10/303 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGV++AM F+A++ CP LIFV TDF +Y S R +F +Y SLDEAYL
Sbjct: 53 ARKFGVKSAMSSFLAKQKCPHLIFVKTDFERYKEISQRIRAIFYEYTDLVEPLSLDEAYL 112
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+TE ++ +S IA E+R +Y+E GL SAG++ N+ +AKV SDINKPNGQ +
Sbjct: 113 DVTE-NKKGNLSASLIAVEIRKRIYDEIGLRASAGISINKFIAKVASDINKPNGQKTINP 171
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL--LCAVFSHSTADF 185
+ V+ F+++LP+ K G+GKVT + ++ GI T + L+K L L +F S A +
Sbjct: 172 EE--VIEFLAALPVNKFYGVGKVTTAKMYNL-GIFTGND-LKKKPLEELMKLFGKSGAHY 227
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLRG 244
+ + G+ ++ R RKSI++ERTFS + + +L +IAE L M+K +G
Sbjct: 228 Y-HIVRGIHNSAVKPNRIRKSIAAERTFSENISSEIFMIERLEQIAEELERRMKKTDTKG 286
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELPVSLRLIGLRVTQFNE 303
+T+TLK+K + F +TR+ T+ ++ + ++ S LL + ++ S+RL+GL +
Sbjct: 287 KTITLKIKYSDFTQQTRSKTMPHFMQAKKEFFPVVSELLYQQKITNSVRLLGLSFGNLDT 346
Query: 304 DKV 306
++V
Sbjct: 347 EEV 349
>gi|429752207|ref|ZP_19285078.1| putative DNA polymerase IV [Capnocytophaga sp. oral taxon 326 str.
F0382]
gi|429177425|gb|EKY18750.1| putative DNA polymerase IV [Capnocytophaga sp. oral taxon 326 str.
F0382]
Length = 356
Score = 186 bits (472), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 112/299 (37%), Positives = 174/299 (58%), Gaps = 6/299 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR+A+ G ARKLCP LIFV F +Y S R +F +Y SLDEAYL
Sbjct: 39 ARKFGVRSAISGAQARKLCPHLIFVKPRFERYKQISMQIRAIFYEYTDLVEPLSLDEAYL 98
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T V ++ S IA+E+R ++ E GLT SAG++ N+ +AK+ SD +KPNGQ +
Sbjct: 99 DVT-VNKKGNPSATLIAQEIRQRIFNETGLTASAGISINKFIAKIASDYHKPNGQTTI-- 155
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
+ V F+ L +RK GIGKVT + + GI +++ +K ++ ++
Sbjct: 156 TQAEVQDFLDKLDVRKFYGIGKVTAEKMYQL-GIFKGKDLREKSLAFLERNFGNSGHYYY 214
Query: 188 SVGLGLGSTNTPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLRGRT 246
+ G+ + R RKS+ +E TF+ + + R+L IAE + ++K+ + G+T
Sbjct: 215 ELSRGIHRSEVQPFRIRKSVGAEETFAENLTSEVYMERELERIAEDVVRRLKKQQVAGKT 274
Query: 247 LTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFNED 304
+TLK+K + F ++TR+ TL+ +ISS E+IL H LL E L S+RL+G+ V+ N +
Sbjct: 275 ITLKIKYSDFTIQTRSKTLKDFISSKEEILLHIKELLYQERLSESVRLLGISVSHLNNE 333
>gi|420160537|ref|ZP_14667317.1| ImpB/MucB/SamB family protein [Capnocytophaga ochracea str. Holt
25]
gi|394760405|gb|EJF42952.1| ImpB/MucB/SamB family protein [Capnocytophaga ochracea str. Holt
25]
Length = 362
Score = 186 bits (472), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 112/300 (37%), Positives = 177/300 (59%), Gaps = 8/300 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR+A+ G ARKLCP LIFV F +Y S R +F +Y SLDEAYL
Sbjct: 48 ARKFGVRSAISGAQARKLCPHLIFVKPRFERYKQISMQIRAIFHEYTDLVEPLSLDEAYL 107
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T V ++ S IA+E+R ++++ GLT SAG++ N+ +AK+ SD KP+GQ +
Sbjct: 108 DVT-VNKKGNPSATLIAQEIRQRIFQQTGLTASAGISVNKFIAKIASDYRKPDGQTTITE 166
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
V F+ L +RK GIGKVT + + GI ++ +K ++ +++
Sbjct: 167 --AEVQDFLDRLDVRKFYGIGKVTAEKMYQL-GIFKGRDLREKSLEFLERNFGNSGNYYY 223
Query: 188 SVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
+ G+ + R RKS+ +E TF+ +T + +L R+L IAE ++ + K+ + G+
Sbjct: 224 ELSRGIHRSEVQPFRIRKSVGAEETFAENLTSEVYML-RELEHIAEDVARRLDKQQVAGK 282
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV-SLRLIGLRVTQFNED 304
T+TLK+K ++F V+TR+ TL+ +ISS +DIL H LL E P S+RL+G+ ++ N +
Sbjct: 283 TVTLKIKYSNFTVQTRSKTLKDFISSKDDILLHIKELLYQEHPAESVRLLGISLSHLNNE 342
>gi|308479872|ref|XP_003102144.1| CRE-POLK-1 protein [Caenorhabditis remanei]
gi|308262299|gb|EFP06252.1| CRE-POLK-1 protein [Caenorhabditis remanei]
Length = 604
Score = 186 bits (471), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 117/284 (41%), Positives = 170/284 (59%), Gaps = 19/284 (6%)
Query: 75 ERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMT 134
E G+ EI E+R V + GLTCSAG+A N +LAK+CSD NKPNGQFVL NDR ++
Sbjct: 246 EFGVGREEIVREIRFRVEQLTGLTCSAGIAANFMLAKICSDFNKPNGQFVLENDREKILK 305
Query: 135 FISSLPIRK-----IGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSV 189
F+ LPIRK +GGIG+V+E L+ + I T +ML K +L FS + FL
Sbjct: 306 FLEKLPIRKVEEMTVGGIGRVSEAHLQSM-EIRTVGDMLLKKALFPLCFSPLAQESFLRT 364
Query: 190 GLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLR-GRTLT 248
LGL + RKSIS ERTFS T D +L + EI ML D++K G+ G+T+T
Sbjct: 365 ALGLPGRPSSSDPRRKSISVERTFSPTSDFKILIAEHTEICRMLEEDIRKSGVTGGKTIT 424
Query: 249 LKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQ--FNEDKV 306
LKLK +SF+V TR++T + ++S +DI K++ LL+ E +RL+G+R++Q F E+K
Sbjct: 425 LKLKLSSFDVLTRSLTPSEVVTSLDDIQKYSMELLERERGKEIRLLGVRLSQLVFEEEK- 483
Query: 307 RAPSDPTQKTLTNFMTSGHASKKIVGDQNSLGSDINDDCLIDDK 350
KT+ +F + K+ + ++ + SD ND ++D +
Sbjct: 484 ------KSKTIADFW---NEKKQQMASEDVMSSDDNDIIMMDTR 518
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 47/64 (73%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFGVRA MPGFI++KLCP L VP +++KY+ S ++F +YD + SLDEAY+
Sbjct: 125 ARRFGVRAGMPGFISKKLCPNLTLVPGNYSKYSKVSRQFSEIFMEYDGDVGMMSLDEAYI 184
Query: 68 DITE 71
D+T+
Sbjct: 185 DLTD 188
>gi|315224925|ref|ZP_07866744.1| DNA-directed DNA polymerase IV [Capnocytophaga ochracea F0287]
gi|314945038|gb|EFS97068.1| DNA-directed DNA polymerase IV [Capnocytophaga ochracea F0287]
Length = 353
Score = 185 bits (470), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 112/300 (37%), Positives = 177/300 (59%), Gaps = 8/300 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR+A+ G ARKLCP LIFV F +Y S R +F +Y SLDEAYL
Sbjct: 39 ARKFGVRSAISGAQARKLCPHLIFVKPRFERYKQISMQIRAIFHEYTDLVEPLSLDEAYL 98
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T V ++ S IA+E+R ++++ GLT SAG++ N+ +AK+ SD KP+GQ +
Sbjct: 99 DVT-VNKKGNPSATLIAQEIRQRIFQQTGLTASAGISVNKFIAKIASDYRKPDGQTTITE 157
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
V F+ L +RK GIGKVT + + GI ++ +K ++ +++
Sbjct: 158 --AEVQDFLDRLDVRKFYGIGKVTAEKMYQL-GIFKGRDLREKSLEFLERNFGNSGNYYY 214
Query: 188 SVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
+ G+ + R RKS+ +E TF+ +T + +L R+L IAE ++ + K+ + G+
Sbjct: 215 ELSRGIHRSEVQPFRIRKSVGAEETFAENLTSEVYML-RELEHIAEDVARRLDKQQVAGK 273
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV-SLRLIGLRVTQFNED 304
T+TLK+K ++F V+TR+ TL+ +ISS +DIL H LL E P S+RL+G+ ++ N +
Sbjct: 274 TVTLKIKYSNFTVQTRSKTLKDFISSKDDILLHIKELLYQEHPAESVRLLGISLSHLNNE 333
>gi|429747821|ref|ZP_19281066.1| putative DNA polymerase IV [Capnocytophaga sp. oral taxon 380 str.
F0488]
gi|429162315|gb|EKY04645.1| putative DNA polymerase IV [Capnocytophaga sp. oral taxon 380 str.
F0488]
Length = 353
Score = 185 bits (470), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 113/300 (37%), Positives = 175/300 (58%), Gaps = 8/300 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR+A+ G ARKLCP LIFV F +Y S R +F +Y SLDEAYL
Sbjct: 39 ARKFGVRSAISGAQARKLCPHLIFVKPRFERYKQISMQIRAIFHEYTDLVEPLSLDEAYL 98
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T V ++ S IA+E+R ++++ GLT SAG++ N+ +AK+ SD KPNGQ +
Sbjct: 99 DVT-VNKKGNPSATLIAQEIRQRIFQQTGLTASAGISVNKFIAKIASDYRKPNGQTTITE 157
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
V F+ L +RK GIGKVT + + GI ++ +K ++ ++
Sbjct: 158 --AEVQDFLDRLDVRKFYGIGKVTAEKMYQL-GIFKGRDLREKSLEFLERNFGNSGHYYY 214
Query: 188 SVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
+ G+ + R RKS+ +E TF+ +T + +L R+L IAE + + K+ + G+
Sbjct: 215 ELSRGIHRSEVQPFRIRKSVGAEETFAENLTSEVYML-RELDHIAEDVVRRLDKQQVAGK 273
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV-SLRLIGLRVTQFNED 304
T+TLK+K ++F V+TR+ TL+ +ISS +DIL H LL E P S+RL+G+ ++ N +
Sbjct: 274 TVTLKIKYSNFTVQTRSKTLKDFISSKDDILLHIKELLYQERPAESVRLLGISLSHLNNE 333
>gi|402493090|ref|ZP_10839845.1| DNA polymerase IV 2 [Aquimarina agarilytica ZC1]
Length = 364
Score = 185 bits (469), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 120/302 (39%), Positives = 177/302 (58%), Gaps = 10/302 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR+AM +ARKLCPELIFV F +Y S R +F +Y SLDEAYL
Sbjct: 52 ARKFGVRSAMSSTVARKLCPELIFVKHHFERYKEVSQQVRAIFFEYTDLVEPLSLDEAYL 111
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQ-FVLP 126
D+TE ++ S IAEE+R + E+ GLT SAG++ N+ +AKV SD NKPNGQ V+P
Sbjct: 112 DVTE-NKKGNPSASLIAEEIRAKILEKTGLTASAGISINKFIAKVASDYNKPNGQKTVIP 170
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADF 185
+ V+ F+ +L I+K G+GKVT+ + GI T ++ K + L F S A +
Sbjct: 171 GE---VLDFLENLDIKKFYGVGKVTQKKMY-ALGIYTGADLKTKTEAYLTQNFGKSGAHY 226
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLRG 244
F V G+ ++ R RKSI +ERTF+ + + +L E+++ L + K + G
Sbjct: 227 FRIVR-GIHNSPVKPHRTRKSIGAERTFNENLASEIYMEARLKELSDELERRLLKSKVAG 285
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELPVSLRLIGLRVTQFNE 303
+T+TLK+K + F + TR+ TL YIS + + + A LL + ++ S+RL+GL + N
Sbjct: 286 KTITLKIKYSDFTLHTRSKTLSYYISDASLLFEVAKELLYQQKMENSVRLLGLSLHNLNN 345
Query: 304 DK 305
K
Sbjct: 346 TK 347
>gi|390953838|ref|YP_006417596.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Aequorivita sublithincola DSM 14238]
gi|390419824|gb|AFL80581.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Aequorivita sublithincola DSM 14238]
Length = 367
Score = 185 bits (469), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 119/301 (39%), Positives = 181/301 (60%), Gaps = 10/301 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR+AM G +ARKLCPELIFV T+F +Y S RK+F +Y SLDEAYL
Sbjct: 53 ARKFGVRSAMSGAMARKLCPELIFVKTNFDRYKEVSKQIRKIFLEYTDLVEPLSLDEAYL 112
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+TE ++ S IAEE+R + ++ GL SAG++ N+ +AK+ SDINKPNGQ L
Sbjct: 113 DVTE-NKKGNPSASMIAEEIRKKIKKKTGLNASAGISINKFVAKIASDINKPNGQKTLSP 171
Query: 128 DRMAVMTFISSLPIRKIGGIGKVT-EHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADF 185
+ V+ F+ +L ++K G+GKVT E + R GI T +++ K L F S A F
Sbjct: 172 EE--VVPFLETLDVKKFYGVGKVTKEKMYR--LGIYTGKDLKGKSLEFLEENFGKSGA-F 226
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERT-FSVTEDKALLYRKLAEIAEMLSADMQKEGLRG 244
+ +V G+ ++ +R +KS+++E T F + + +L EIA + + K L G
Sbjct: 227 YHNVVRGIHNSKVKPSRTQKSLAAEHTFFENISSEIFMMERLDEIAAEVEKRLHKSKLAG 286
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFNE 303
+T+TLK+K + F ++TR+ TL +++S E IL LL E + S+RL+G+ ++ N
Sbjct: 287 KTVTLKIKYSDFTLQTRSKTLPLFVASKELILDVVKELLFQERMKESVRLLGISISNLNN 346
Query: 304 D 304
+
Sbjct: 347 E 347
>gi|213963495|ref|ZP_03391749.1| DNA polymerase IV [Capnocytophaga sputigena Capno]
gi|213953903|gb|EEB65231.1| DNA polymerase IV [Capnocytophaga sputigena Capno]
Length = 356
Score = 184 bits (468), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 111/299 (37%), Positives = 174/299 (58%), Gaps = 6/299 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR+A+ G AR+LCP LIFV F +Y S R +F +Y SLDEAYL
Sbjct: 39 ARKFGVRSAISGAQARRLCPHLIFVKPRFERYKQISMQIRAIFDEYTDLVEPLSLDEAYL 98
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T V ++ S IA+E+R ++ E GLT SAG++ N+ +AK+ SD +KPNGQ +
Sbjct: 99 DVT-VNKKGNPSATLIAQEIRQRIFNEIGLTASAGISVNKFIAKIASDYHKPNGQTTI-- 155
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
+ V F+ L +RK GIGKVT + + GI +++ +K ++ ++
Sbjct: 156 TQAEVQDFLDKLDVRKFYGIGKVTAEKMYQL-GIFKGKDLREKSLAFLERNFGNSGHYYY 214
Query: 188 SVGLGLGSTNTPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLRGRT 246
+ G+ + R RKS+ +E TF+ + + R+L IAE + ++K+ + G+T
Sbjct: 215 ELSRGIHRSEVQPFRIRKSVGAEETFAENLTSEVYMERELERIAEDVVRRLEKQQVAGKT 274
Query: 247 LTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFNED 304
+TLK+K + F ++TR+ TL+ +ISS E+IL H LL E L S+RL+G+ V+ N +
Sbjct: 275 ITLKIKYSDFTIQTRSKTLKDFISSKEEILLHIKELLYQERLSESVRLLGISVSHLNNE 333
>gi|429755769|ref|ZP_19288401.1| putative DNA polymerase IV [Capnocytophaga sp. oral taxon 324 str.
F0483]
gi|429172746|gb|EKY14286.1| putative DNA polymerase IV [Capnocytophaga sp. oral taxon 324 str.
F0483]
Length = 353
Score = 184 bits (467), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 112/300 (37%), Positives = 175/300 (58%), Gaps = 8/300 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR+A+ G ARKLCP LIFV F +Y S R +F +Y SLDEAYL
Sbjct: 39 ARKFGVRSAISGAQARKLCPHLIFVKPRFERYKQISMQIRAIFHEYTDLVEPLSLDEAYL 98
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T V ++ S IA+E+R ++++ GLT SAG++ N+ +AK+ SD KPNGQ +
Sbjct: 99 DVT-VNKKGNPSATLIAQEIRQRIFQQTGLTASAGISVNKFIAKIASDYRKPNGQTTITE 157
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
V F+ L +RK GIGKVT + + GI ++ +K ++ ++
Sbjct: 158 --AEVQDFLDRLDVRKFYGIGKVTAEKMYQL-GIFKGRDLREKSLEFLERNFGNSGHYYY 214
Query: 188 SVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
+ G+ + R RKS+ +E TF+ +T + +L R+L IAE + + K+ + G+
Sbjct: 215 ELSRGIHRSEVQPFRIRKSVGAEETFAENLTSEVYML-RELDHIAEDVVRRLDKQQVAGK 273
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV-SLRLIGLRVTQFNED 304
T+TLK+K ++F V+TR+ TL+ +IS+ +DIL H LL E P S+RL+G+ ++ N +
Sbjct: 274 TVTLKIKYSNFTVQTRSKTLKDFISNKDDILLHIKELLYQERPAESVRLLGISLSHLNNE 333
>gi|123425224|ref|XP_001306764.1| ImpB/MucB/SamB family protein [Trichomonas vaginalis G3]
gi|121888356|gb|EAX93834.1| ImpB/MucB/SamB family protein [Trichomonas vaginalis G3]
Length = 519
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 117/334 (35%), Positives = 186/334 (55%), Gaps = 23/334 (6%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDF-TKYTYYSDLTRKVFCKYDPNFMAASLDEAY 66
AR++GVR+ M F+A KLCP L V + KY +S ++VF KYDP F++ DEA
Sbjct: 134 ARKYGVRSGMAVFVAMKLCPHLNVVHYNHGDKYMNFSKQVQEVFKKYDPEFVSFGCDEAT 193
Query: 67 LDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP 126
LDIT + + + ++A++++ V+++ LT S GVA L+K+ SDINKPNG F++P
Sbjct: 194 LDITPLLND-NLHSDQLAKQIQQEVFDKTKLTVSIGVAHTPQLSKIASDINKPNGIFIVP 252
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFF 186
+ + +F+ +LP+RKI GIG V E IL+ + GI TC ++L K + + SH F
Sbjct: 253 KNDDDLKSFLHTLPVRKIPGIGGVNEQILKGI-GIETCGDILLKKAEIWLTMSHKFCRFV 311
Query: 187 LSVGLGLGS---TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLR 243
S +G+ + PQ +SIS +RT T+DK L + +A +S M+K +
Sbjct: 312 FSAAVGVQPREYESGPQ----QSISKDRTIDATDDKCTLIDLVESLARKISKKMKKMRIA 367
Query: 244 GRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL----KAELPVSLRLIGLRVT 299
R + +K K +F+V +++ T Y +S E L +AS+ L + E + LRL+G++ T
Sbjct: 368 CRNVAVKFKDINFKVISKSYTFD-YDTSDESDLVNASLKLLLEERQERSIKLRLVGVKAT 426
Query: 300 QFNEDKVRAPSDPTQKTLTNFM---TSGHASKKI 330
+P D Q ++ F+ T + KKI
Sbjct: 427 NLT-----SPGDKKQSSIKKFLQEKTESSSPKKI 455
>gi|193205702|ref|NP_001122693.1| Protein POLK-1, isoform b [Caenorhabditis elegans]
gi|373253819|emb|CCD62143.1| Protein POLK-1, isoform b [Caenorhabditis elegans]
Length = 463
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 140/382 (36%), Positives = 196/382 (51%), Gaps = 69/382 (18%)
Query: 17 MPGFIARKLCPELIFVPTD---FTKYT---------------------YYSDLT------ 46
MPGFI+ KLCP L VP + +TK + + DLT
Sbjct: 1 MPGFISNKLCPSLTIVPGNYPKYTKVSRQFSQIFMEYDSDVGMMSLDEAFIDLTDYVASN 60
Query: 47 --RKVF----------C---KYDPN---FMAASLDEAYLDITEVCR-------ERGISGI 81
+K F C ++D N ++E+ E R E G
Sbjct: 61 TEKKTFKRHRFGGDCPCWLPRFDENENTLEDLKIEESICPKCEKSRKIYYDHVEFGTGRE 120
Query: 82 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 141
E E+R V + GLTCSAG+A N +LAK+CSD+NKPNGQ+VL ND+ A+M F+ LPI
Sbjct: 121 EAVREIRFRVEQLTGLTCSAGIASNFMLAKICSDLNKPNGQYVLENDKNAIMEFLKDLPI 180
Query: 142 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQA 201
RK+GGIG+V E L+ I T +M K +L F+ + + FL LGL +
Sbjct: 181 RKVGGIGRVCEAQLK-AMDIQTVGDMNLKKNLYPLCFTPLSQESFLRTALGLPGRPSESD 239
Query: 202 RFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGL-RGRTLTLKLKTASFEVRT 260
RKSIS ERTFS T D +L + EI ML D++K G+ G+T+TLKLK +SF+V T
Sbjct: 240 PRRKSISVERTFSPTSDFNILLEEHQEICRMLEEDVRKSGIVGGKTVTLKLKLSSFDVLT 299
Query: 261 RAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQ--FNEDKVRAPSDPTQKTLT 318
R++T + S EDI K + LL+ E +RL+G+R++Q F ED+ + KT+T
Sbjct: 300 RSLTPSDVVKSLEDIQKFSLELLEKEKGKEIRLLGVRLSQLIFEEDEKKR-----SKTIT 354
Query: 319 NFMTSGHASKKIVGDQNSLGSD 340
F ++K + QN GS+
Sbjct: 355 EFW-----NEKKLQIQNLQGSE 371
>gi|344202523|ref|YP_004787666.1| DNA polymerase IV [Muricauda ruestringensis DSM 13258]
gi|343954445|gb|AEM70244.1| DNA polymerase IV [Muricauda ruestringensis DSM 13258]
Length = 366
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 118/299 (39%), Positives = 175/299 (58%), Gaps = 10/299 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR+AM G IAR+ CPELIFV F +Y S R +F +Y SLDEAYL
Sbjct: 53 ARKFGVRSAMAGAIARRNCPELIFVRPRFDRYKEISKQIRGIFFEYTDLVEPLSLDEAYL 112
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQ-FVLP 126
D+TE ++ S IA+E+R ++++ GLT SAG++ N+ +AKV SD NKPNGQ V P
Sbjct: 113 DVTE-NKKGNPSATLIAQEIRNKIFDKTGLTASAGISINKFIAKVASDYNKPNGQKTVNP 171
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVT-EHILRDVFGINTCEEMLQKGSLLCAVFSHSTADF 185
+ V+ F+ +L IRK G+GKVT E + R GI T ++ QK + +
Sbjct: 172 EE---VIEFLENLDIRKFYGVGKVTAEKMYR--LGIFTGFDLKQKSVDFLEKHFGKSGSY 226
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERT-FSVTEDKALLYRKLAEIAEMLSADMQKEGLRG 244
+ +V G+ ++ R KS+ +ERT F + + KL IA L +QK + G
Sbjct: 227 YYNVVRGIHLSSVKPHRIPKSVGAERTFFENLSSEIFMLEKLENIASELEKRLQKSKIAG 286
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELPVSLRLIGLRVTQFN 302
+T+TLK+K + F ++TR+ TL +I+S + IL+ A LL ++ L S+RL+G+ + N
Sbjct: 287 KTITLKIKYSDFTLQTRSKTLPYFIASKDLILETAKELLYQSSLENSVRLLGISLANLN 345
>gi|408371276|ref|ZP_11169044.1| DNA polymerase IV [Galbibacter sp. ck-I2-15]
gi|407743237|gb|EKF54816.1| DNA polymerase IV [Galbibacter sp. ck-I2-15]
Length = 367
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 115/309 (37%), Positives = 175/309 (56%), Gaps = 9/309 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FGVR+AM G +A++LCPELIFVP F +Y S R +F +Y SLDEAYL
Sbjct: 53 ARAFGVRSAMSGVLAKRLCPELIFVPPRFDRYREISMKIRAIFLEYTDLVEPLSLDEAYL 112
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+TE ++ S IA ++R ++++ GL CSAG++ N+ +AK+ SD NKPNGQ +
Sbjct: 113 DVTE-NKKGNPSATLIASQIRERIFQQTGLRCSAGISINKFVAKIASDYNKPNGQKTVEP 171
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
D V+ F+ +L IRK G+GKVT + + GI T ++ +K + +
Sbjct: 172 DE--VIPFLEALDIRKFYGVGKVTAQKMYQL-GIFTGLDLKKKPIEFLNEHFGKSGSLYY 228
Query: 188 SVGLGLGSTNTPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLRGRT 246
+V G+ ++ R KS+ +ERTF+ + + +L ++ L ++K + G+T
Sbjct: 229 NVVRGIHNSPVKPDRVPKSVGAERTFTENLSSEVFMLERLEHLSVELEQRLRKNKVAGKT 288
Query: 247 LTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFNEDK 305
+TLK+K + F ++TR+ TL YIS IL A+ LL E L S+RL+G+ + N D
Sbjct: 289 ITLKIKYSDFSLQTRSKTLDFYISDKSLILDTATELLYQEKLHNSVRLLGISLGNLNTD- 347
Query: 306 VRAPSDPTQ 314
AP P Q
Sbjct: 348 --APEIPVQ 354
>gi|225012038|ref|ZP_03702475.1| DNA-directed DNA polymerase [Flavobacteria bacterium MS024-2A]
gi|225003593|gb|EEG41566.1| DNA-directed DNA polymerase [Flavobacteria bacterium MS024-2A]
Length = 366
Score = 182 bits (462), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 112/305 (36%), Positives = 175/305 (57%), Gaps = 12/305 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++GVR+A+ G IA++LCP LIF PT F +Y S++ R VF +Y SLDEA+L
Sbjct: 56 ARKYGVRSALSGVIAKRLCPHLIFAPTRFDRYKEISEIVRSVFLEYTSLVEPLSLDEAFL 115
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D++E S +A+E+R ++ + GLT SAG++ N+ LAK+ SD NKPNGQ +P
Sbjct: 116 DVSEYP-----SATMVAQEIREKIFSKTGLTASAGISINKFLAKIASDWNKPNGQKTIPP 170
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM-LQKGSLLCAVFSHSTADFF 186
+ V++F+ +L ++K GIG T+ + + GI + ++ LQ + L F S +F
Sbjct: 171 EE--VLSFLENLDVKKFHGIGAKTKLKMYGL-GIYSGNDLKLQSAAFLEKHFGKSGIHYF 227
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLRGR 245
V G+ ++ R KS+ +ERTF + + KL I+ +L +K + G+
Sbjct: 228 -KVVRGIHTSEVKPHRIPKSLGAERTFETNLSSEVYIEEKLKLISALLEKRTKKNKVAGK 286
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFNED 304
T+TLK+K + F +TR+ T Y+SS E I + + LL E L S+RLIG+ ++ N
Sbjct: 287 TITLKIKYSDFIQQTRSKTGTLYLSSKELIFEESKKLLYQEKLLNSVRLIGISLSNLNTS 346
Query: 305 KVRAP 309
K P
Sbjct: 347 KKEIP 351
>gi|146298645|ref|YP_001193236.1| DNA-directed DNA polymerase [Flavobacterium johnsoniae UW101]
gi|146153063|gb|ABQ03917.1| DNA-directed DNA polymerase [Flavobacterium johnsoniae UW101]
Length = 360
Score = 182 bits (461), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 113/304 (37%), Positives = 177/304 (58%), Gaps = 8/304 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR+A+ G +A+K CPE+IFV F +Y S K+F +Y SLDEAYL
Sbjct: 53 ARKFGVRSAISGVLAKKYCPEIIFVRPRFDRYKEISSKIHKIFHEYTDLVEPLSLDEAYL 112
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T+ ++ S +A+E+RT ++ E GLT SAG++ N+ +AK+ SDINKPNGQ +
Sbjct: 113 DVTQ-NKKGNPSASLLAQEIRTRIFNEVGLTASAGISVNKFVAKIASDINKPNGQKTVNP 171
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFF 186
D ++ F+ LPIRK G+GKVT + + GI T ++ K L F S A F+
Sbjct: 172 DE--IIPFLEELPIRKFYGVGKVTTEKMYQL-GIFTGSDLKSKSLEFLEKHFGKSGA-FY 227
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLRGR 245
SV G+ ++ R KS+++E TF V + + +L IA L +++ + G+
Sbjct: 228 YSVVRGIHNSEVKPHRITKSVAAEHTFDVNLSSEIFMLEQLERIAVSLEKRLKRHNVSGK 287
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFNED 304
T+TLK+K + F +TR+ TL +IS I++ LL E + S+RL+G+ ++ N +
Sbjct: 288 TVTLKIKYSDFTQQTRSKTLPYFISDKSLIMEIVEELLYQEKMKNSVRLLGISLSNLNTE 347
Query: 305 KVRA 308
+ +A
Sbjct: 348 EKKA 351
>gi|336172096|ref|YP_004579234.1| DNA polymerase IV [Lacinutrix sp. 5H-3-7-4]
gi|334726668|gb|AEH00806.1| DNA polymerase IV [Lacinutrix sp. 5H-3-7-4]
Length = 366
Score = 182 bits (461), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 116/298 (38%), Positives = 172/298 (57%), Gaps = 8/298 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR+A+ G AR+LCP+LIFV F +Y S R +F Y SLDEAYL
Sbjct: 53 ARKFGVRSAISGVKARRLCPDLIFVKPRFDRYKEISSKIRAIFYDYTDLVEPLSLDEAYL 112
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQ-FVLP 126
D+TE ++ S IAEE+RT ++ E GLT SAG++ N+ +AKV SD NKPNGQ V P
Sbjct: 113 DVTE-NKKGNPSASLIAEEIRTRIFNEVGLTASAGISINKFIAKVASDYNKPNGQKTVNP 171
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFF 186
+ V+ F+ +L IRK GIGKVT + GI T ++ K + ++
Sbjct: 172 EE---VLGFLEALDIRKFYGIGKVTAEKMYQK-GIFTGTDLKSKSLEFLEQNFGKSGSYY 227
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLRGR 245
+ G+ ++ R RKS+++ERTFS + + KL IAE +S + + + G+
Sbjct: 228 YYIVRGIHNSEVKPNRIRKSLAAERTFSENLSSEIFMLEKLEHIAEEVSKRLIRSKVAGK 287
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFN 302
T+TLK+K + F ++TR+ TL +IS +L+ A LL E + S+RL+G+ ++ N
Sbjct: 288 TVTLKIKYSDFTLQTRSKTLPYFISDKSVVLETAKELLYQEKMNNSVRLLGISLSNLN 345
>gi|403376484|gb|EJY88222.1| DNA polymerase IV / kappa [Oxytricha trifallax]
Length = 1212
Score = 182 bits (461), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 108/332 (32%), Positives = 183/332 (55%), Gaps = 19/332 (5%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCK-YDPNFMAASLDEAY 66
AR FGVR+AMPGF+ +KLCP L+F+ + KY SD K + YD + LDEA
Sbjct: 585 AREFGVRSAMPGFMGKKLCPTLVFIRPNKDKYRKVSDTEFKAILREYDDKLESIGLDEAN 644
Query: 67 LDITEVCRERGISGIE----IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQ 122
LDIT+ ++ G+ E +AE++R + + +T S G+A N++LAK+CS++NKPNGQ
Sbjct: 645 LDITDFLQKNGMDCPEGRIFVAEKIREQIKTKMQMTSSVGIASNKMLAKICSELNKPNGQ 704
Query: 123 FVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHST 182
L D + F+ + +R + G+G+V E +L + INTC+E+L+K + + F+ +
Sbjct: 705 SYLAFDADKIEEFMRAKKVRDVPGVGRVHEQVLIGL-DINTCDEILKKAADIYINFTETA 763
Query: 183 ADFFLSVGLGLG--STNTPQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQK 239
+F + +G+ S + ++SIS ++F V K+ ++A L+ +
Sbjct: 764 FEFLVKAAMGISRCSHDDDSGNLAKRSISFSKSFKVISRFEQFKEKMDKLATNLAEKCNE 823
Query: 240 EGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS-LRLIGLRV 298
+ RTL+++ KT F ++ R++T ++I +DI+++A+ LL A PV R++ L++
Sbjct: 824 MKILARTLSIEFKTEKFMLKQRSLTFNQHICHKDDIMRYANELLNAVWPVEPCRMMMLKL 883
Query: 299 TQFNEDKVRAPSDPTQ------KTLTNFMTSG 324
+ R D T+ K L FM G
Sbjct: 884 NNL---RNRTEKDSTESLLKDVKNLQFFMGKG 912
>gi|399026065|ref|ZP_10728032.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Chryseobacterium sp. CF314]
gi|398076760|gb|EJL67810.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Chryseobacterium sp. CF314]
Length = 364
Score = 181 bits (460), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 115/301 (38%), Positives = 178/301 (59%), Gaps = 14/301 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++GVR+AMP A++ CP LIFVP F +Y S R++F +Y SLDEAYL
Sbjct: 52 ARKYGVRSAMPSKTAKEKCPHLIFVPPHFARYKEISRKIREIFYEYTDLVEPLSLDEAYL 111
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+TE +E S +IA E+R ++E+ GLT SAG++ N+ LAKV SDINKPNGQ +
Sbjct: 112 DVTENKKEIE-SANQIAREIRQKIFEQTGLTASAGISVNKFLAKVASDINKPNGQKTIHP 170
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL--LCAVFSHSTADF 185
D+ + F+ LP+ K G+G+VT + + + GI ++ L+K +L L ++F S +
Sbjct: 171 DK--IENFLEELPVEKFYGVGRVTANKMFTL-GIFKGKD-LKKKTLQELVSLFGKS-GSY 225
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERT-FSVTEDKALLYRKLAEIAEMLSADMQKEGLRG 244
+ +V G+ ++ R +KS++ ERT F D+ + KL ++ L +QK + G
Sbjct: 226 YYNVVRGIHNSEVKPHRIQKSVAVERTFFEDLFDEQQINEKLESLSAELHQRLQKNNILG 285
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSED---ILKHASVLLKAELPVSLRLIGLRVTQF 301
R LTLK+K F + TR++T ++Y +S+E+ I K L + PV RL+GL ++
Sbjct: 286 RALTLKIKYKDFSLFTRSITKEEYFTSAEEYFGISKKLWELRPFDKPV--RLLGLSLSHL 343
Query: 302 N 302
N
Sbjct: 344 N 344
>gi|325286065|ref|YP_004261855.1| DNA polymerase IV [Cellulophaga lytica DSM 7489]
gi|324321519|gb|ADY28984.1| DNA polymerase IV [Cellulophaga lytica DSM 7489]
Length = 365
Score = 181 bits (459), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 119/318 (37%), Positives = 178/318 (55%), Gaps = 10/318 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR+AM G++A++ CP+LIFVP F +Y S R +F Y SLDEAYL
Sbjct: 53 ARKFGVRSAMSGYMAKRNCPDLIFVPPRFARYKEISQKIRAIFYDYTDLVEPLSLDEAYL 112
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQ-FVLP 126
D+T V ++ S +A+E+R +Y E GLT SAG++ N+ +AKV SD NKPNGQ V P
Sbjct: 113 DVT-VNKKGNPSASLLAKEIRERIYNELGLTASAGISINKFIAKVASDYNKPNGQKTVNP 171
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADF 185
+ V+ F+ L IRK G+GKVT + V GI T ++ K L F S A +
Sbjct: 172 EE---VLAFLEELEIRKFYGVGKVTAEKMYKV-GIFTGLDLKNKSLEFLEKHFGKSGA-Y 226
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLRG 244
+ V G+ ++ R KS+ +ERTF+ + + +L IA L ++K + G
Sbjct: 227 YYHVVRGIHNSPVKPNRIPKSVGAERTFNENLSSEIFMLERLENIANELERRLKKSKIAG 286
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFNE 303
+T+TLK+K + F ++TR+ T+ +I+ + IL+ A LL E L S+RL+G+ + N
Sbjct: 287 KTITLKIKYSDFTLQTRSKTIPYFIADKDLILEIAKELLYQEKLENSVRLLGISLANLNT 346
Query: 304 DKVRAPSDPTQKTLTNFM 321
+ P + FM
Sbjct: 347 PDKKKPEQESISVQLKFM 364
>gi|225010252|ref|ZP_03700724.1| DNA-directed DNA polymerase [Flavobacteria bacterium MS024-3C]
gi|225005731|gb|EEG43681.1| DNA-directed DNA polymerase [Flavobacteria bacterium MS024-3C]
Length = 365
Score = 181 bits (459), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 119/308 (38%), Positives = 178/308 (57%), Gaps = 8/308 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FGVR+AM G +A +LCP+LIFVP F +Y S +F ++ SLDEAYL
Sbjct: 53 ARAFGVRSAMSGIMASRLCPQLIFVPPRFERYKEVSAQISTIFRQHTDLVEPLSLDEAYL 112
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T ++ S IA E+RT + + GL SAG++ N+ +AK+ SDINKPNGQ +P
Sbjct: 113 DVTH-HKKGNPSASLIASEIRTEILKLTGLHASAGISINKFVAKIASDINKPNGQKTIPP 171
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM-LQKGSLLCAVFSHSTADFF 186
+ V++F+ +L IRK GIGKVT + + GI T ++ L+ L F S F+
Sbjct: 172 EE--VLSFLENLDIRKFFGIGKVTADKMYGL-GIFTGADLKLKSEDFLETHFGKSGRYFY 228
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLRGR 245
+V G+ + R +KS+ +ERTF+ + L K+ +AE LS + + L G+
Sbjct: 229 RAVR-GVHHSEVSPERIQKSVGAERTFNENISSEVFLEGKIIALAEELSKRLGRSKLSGK 287
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFNED 304
T+TLKLK A F +TR+ TL +I++ + I+ A+ LL E L S+RL+G+ + + N +
Sbjct: 288 TITLKLKYADFNTQTRSKTLPYFIANKDLIIAAATELLYQEVLSNSVRLLGISMGKLNNE 347
Query: 305 KVRAPSDP 312
K A P
Sbjct: 348 KKEAIKGP 355
>gi|157871750|ref|XP_001684424.1| putative DNA polymerase kappa [Leishmania major strain Friedlin]
gi|68127493|emb|CAJ05435.1| putative DNA polymerase kappa [Leishmania major strain Friedlin]
Length = 598
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 115/325 (35%), Positives = 178/325 (54%), Gaps = 14/325 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++GVR+ MPGFI +KLCPELI VP DF Y + + +YD F++ LDE +
Sbjct: 185 ARQYGVRSGMPGFIGKKLCPELIIVPNDFPAYQREAARVHSIASRYDAQFVSVGLDELTM 244
Query: 68 DITEVCRE-RGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VL 125
D+T+ +E +S +IA + R V+ + LT S G+ P +LAK+ S++NKPNGQ +
Sbjct: 245 DVTKYLQEFPAVSASDIAHDFRDEVFLKTQLTSSGGIGPTSILAKIASNVNKPNGQHEIT 304
Query: 126 PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADF 185
R V+ ++ +P+RKI GIG E L I+TC +L+ LL +F T
Sbjct: 305 LLTREEVINYVRDIPLRKIPGIGYAQEMTL-GALHIHTCGGLLEHKYLLAYLFREKTLAH 363
Query: 186 FLSVGLGLGST-NTPQARFRKSISSERTFS----VTEDKALLYRKLAEIAEMLSADMQKE 240
+LSVGLGL T + + + R+S+ E +FS E L+RKL E + ++
Sbjct: 364 YLSVGLGLAETFSLRKHQARQSVGKETSFSEPLPSPEAFTRLFRKLLEQCHVRCV---RD 420
Query: 241 GLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL--PVSLRLIGLRV 298
L+ R +TL LK +++ +VTL + + + L+ + LL+ L LRLIG+R+
Sbjct: 421 HLQPRKMTLVLKYRTYDTEQFSVTLPSHTNDLKVWLEASQKLLEPHLLHYAELRLIGVRL 480
Query: 299 TQFNE-DKVRAPSDPTQKTLTNFMT 322
+F + D A + T+ LT +T
Sbjct: 481 QRFTDIDDDHAGLNSTRDALTGALT 505
>gi|270356843|gb|ACZ80632.1| putative DNA-directed polymerase kappa [Filobasidiella depauperata]
Length = 570
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 110/298 (36%), Positives = 160/298 (53%), Gaps = 41/298 (13%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR+ M GFIA+KLCP +I T F Y S R++ +YD N M ASLDE YL
Sbjct: 140 ARKFGVRSGMAGFIAKKLCPNIILTDTHFDLYIAASKSVREILEQYDENLMMASLDEGYL 199
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLA---KVCSDINKPNGQFV 124
+ LR V +E +T SAG+APNR+LA K+CSD NKPNGQ+
Sbjct: 200 -----------------KHLRNQVEKETNMTISAGIAPNRMLAKMGKICSDKNKPNGQYE 242
Query: 125 LPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTAD 184
+ +R ++ F+ LP+RKI G G+VTE L + G+ +C ++ K + L +
Sbjct: 243 MNFERSKIVRFMRDLPVRKIPGFGRVTERYL-ESLGVKSCGDIYDKRAELLVMNHWLGFR 301
Query: 185 FFLSVGLGLGSTN-TPQAR-FRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGL 242
LG+ N TP+ R RKS+ ERTF + + L+ I + L D+++
Sbjct: 302 GLCRTYLGIADNNVTPRKREERKSVGVERTFRNKTNDEDIMNTLSSIVDELERDLER--- 358
Query: 243 RGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQ 300
+RTRA ++ K++SS++DIL A LL+ ELP+ +RL+G + Q
Sbjct: 359 ---------------LRTRAKSVSKFVSSAKDILPIAQDLLQRELPLCIRLLGFFLPQ 401
>gi|372223245|ref|ZP_09501666.1| DNA polymerase IV [Mesoflavibacter zeaxanthinifaciens S86]
Length = 365
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 115/301 (38%), Positives = 180/301 (59%), Gaps = 10/301 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++GVR+AM G++A+K CPELIFV F +Y S R+VF +Y SLDEAYL
Sbjct: 53 ARKYGVRSAMSGYLAQKNCPELIFVKPRFDRYKEISQQIRQVFFEYTDLVEPLSLDEAYL 112
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQ-FVLP 126
D+T+ ++ S IA+E+R + ++ GLT SAG++ N+ +AK+ SD NKPNGQ V P
Sbjct: 113 DVTQ-NKKGNPSATLIAQEIRQKILDKTGLTASAGISINKFIAKIASDYNKPNGQKTVNP 171
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADF 185
+ V+ F+S+L IRK G+GKVT + + GI T ++ +K L F S +
Sbjct: 172 EE---VLEFLSALDIRKFYGVGKVTAEKMYQL-GIFTGADLKKKSLEFLNQEFGKSGQHY 227
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLRG 244
+ +V G+ + +R KS+ +ERTFS + + ++L IA+ L ++K L G
Sbjct: 228 Y-NVVRGIHLSTVKPSRTPKSVGAERTFSENLSSEIFMLQRLENIAQELEKRLKKSKLAG 286
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELPVSLRLIGLRVTQFNE 303
+T+TLK+K + F ++TR+ TL +I+ IL +A LL ++ L S+RL+G+ + N
Sbjct: 287 KTVTLKIKYSDFTLQTRSKTLPFFIADKSLILDNAKELLYQSPLENSVRLLGISLANLNT 346
Query: 304 D 304
+
Sbjct: 347 E 347
>gi|89889949|ref|ZP_01201460.1| DNA polymerase IV, damage-inducible protein [Flavobacteria
bacterium BBFL7]
gi|89518222|gb|EAS20878.1| DNA polymerase IV, damage-inducible protein [Flavobacteria
bacterium BBFL7]
Length = 361
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 116/302 (38%), Positives = 173/302 (57%), Gaps = 12/302 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++GVR+AMP A+KLCP+LIFV F KY S R +F Y SLDEAYL
Sbjct: 52 ARKYGVRSAMPSITAKKLCPDLIFVKHRFDKYREVSSQIRDIFLDYTDLVEPLSLDEAYL 111
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+TE + S IA ++R +YE GLT SAG++ N+ +AK+ SD NKPNGQ +
Sbjct: 112 DVTE-NKLNYPSATVIAYDIRRRIYETTGLTASAGISINKFVAKIASDYNKPNGQKTITP 170
Query: 128 DRMAVMTFISSLPIRKIGGIGKVT--EHILRDVF-GINTCEEMLQKGSLLCAVFSHSTAD 184
+ V+ F+ L IRK GIGKVT + L+ +F G + E L+ L F S A
Sbjct: 171 EE--VIPFLEELEIRKFHGIGKVTAEKMYLQGIFTGAHLKERSLE---FLQEHFGKSGAH 225
Query: 185 FFLSVGLGLGSTNTPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLR 243
++ ++ G+ + R RKS+ +ERTFS + + +L +IAE + + K +
Sbjct: 226 YY-NIVRGIHHSPVKPDRIRKSLGAERTFSENISSEIFMKERLTQIAEEIEKRLAKNDVA 284
Query: 244 GRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFN 302
G+T+TLK+K + F+ +TR+ TL +I + + IL A L++ E S+RL+G+ ++ N
Sbjct: 285 GKTVTLKIKYSDFKTQTRSKTLPHFIRTKDLILATAIELMEQEGFRESVRLLGITLSNLN 344
Query: 303 ED 304
D
Sbjct: 345 TD 346
>gi|347535095|ref|YP_004842520.1| DNA polymerase IV, damage-inducible protein DinB [Flavobacterium
branchiophilum FL-15]
gi|345528253|emb|CCB68283.1| DNA polymerase IV, damage-inducible protein DinB [Flavobacterium
branchiophilum FL-15]
Length = 361
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 112/303 (36%), Positives = 171/303 (56%), Gaps = 8/303 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR+A+ G +A+K CP+LIFV F +YT S R +F +Y SLDEAYL
Sbjct: 53 ARKFGVRSALSGVLAKKYCPDLIFVKPRFDRYTEISKKIRSIFYEYTDLVEPLSLDEAYL 112
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQ-FVLP 126
D+T+ ++ S IA E+R ++ E GLT SAG++ N+ +AK+ SD NKPNGQ V P
Sbjct: 113 DVTQ-NKKNMSSATMIAAEIRQKIFIELGLTASAGISINKFVAKIASDYNKPNGQKTVAP 171
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFF 186
N+ V+ F+ LPI+K G+GKVT + + GI T ++ K + F+
Sbjct: 172 NE---VLLFLEQLPIKKFYGVGKVTTEKMYQL-GIFTGLDLKSKSLDFLEKHFGKSGTFY 227
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLRGR 245
V G+ + R KS+++E TF + + + KL++IA L +QK G+
Sbjct: 228 YHVVRGVHNGEVKANRIAKSVAAEHTFDINLTSEIFMLEKLSKIANELERRLQKHQKAGK 287
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFNED 304
T+TLK+K + F +TR+ TL +IS + + A LL E L S+RL+G+ ++ N +
Sbjct: 288 TVTLKIKYSDFTQQTRSKTLPYFISDKSLLFEFAKELLYQEKLKNSVRLLGISLSNLNTE 347
Query: 305 KVR 307
+
Sbjct: 348 TTK 350
>gi|86134767|ref|ZP_01053349.1| DNA polymerase IV [Polaribacter sp. MED152]
gi|85821630|gb|EAQ42777.1| DNA polymerase IV [Polaribacter sp. MED152]
Length = 360
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 111/302 (36%), Positives = 178/302 (58%), Gaps = 12/302 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGV++AM +A++ CP +IFV +DF +Y S R++F +Y SLDEAYL
Sbjct: 53 ARKFGVKSAMSNVLAKQKCPHIIFVKSDFARYKELSAQIREIFFEYTDLVEPLSLDEAYL 112
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T ++ S EIA E+R +Y++ GL SAG++ N+ +AKV SDINKPNGQ +
Sbjct: 113 DVTN-NKKNNPSANEIAREIRQKIYDKTGLRASAGISINKFIAKVASDINKPNGQKTIHP 171
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL--LCAVFSHSTADF 185
+ V+ F+ LP+ K G+GKVT + ++ GI + L+K SL L +F S +
Sbjct: 172 EE--VIQFLEELPVNKFYGVGKVTAAKMYNL-GIFVGND-LKKRSLEELTQLFGKSGLHY 227
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTF--SVTEDKALLYRKLAEIAEMLSADMQKEGLR 243
+ ++ G+ + R RKS+ +ERTF +++ + +L KL +IA+ + M K +
Sbjct: 228 Y-NIVRGIHKSEVKPNRIRKSVGAERTFRENISSEIYML-DKLNDIADEIEKRMHKSNTK 285
Query: 244 GRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFN 302
G+T+TLK+K + F +TR+ T+ ++IS ++ LL E L S+RL+GL + N
Sbjct: 286 GKTITLKIKYSDFTQQTRSKTVGQFISKKKEFFPVVKELLYQEKLENSVRLLGLSFSNLN 345
Query: 303 ED 304
+
Sbjct: 346 NN 347
>gi|340621022|ref|YP_004739473.1| DNA polymerase IV 2 [Capnocytophaga canimorsus Cc5]
gi|339901287|gb|AEK22366.1| DNA polymerase IV 2 [Capnocytophaga canimorsus Cc5]
Length = 370
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 111/299 (37%), Positives = 171/299 (57%), Gaps = 10/299 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR+AM G +A+K CPELIF+P F +Y S R++F +Y SLDEAYL
Sbjct: 55 ARKFGVRSAMSGVVAKKRCPELIFMPPRFERYRQISQQIREIFYQYTDLVEPLSLDEAYL 114
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T ++ S IA E+R +YE+ GLT SAG++ N+ +AK+ SD NKPNGQ +
Sbjct: 115 DVTH-NKKNCPSATLIATEIRQKIYEKTGLTASAGISINKFVAKIASDFNKPNGQKTVSF 173
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
D V F+ L +++ GIGKVT + + GI T +++ K + A ++
Sbjct: 174 DE--VQDFLDVLDVKRFYGIGKVTTEKMY-LKGIFTGKDLRNKSLSFLEEHFGNHAIYYY 230
Query: 188 SVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
+ G+ + R KS+ +ERTFS +T + + + L IA+ L M K+G+ G+
Sbjct: 231 QLARGIHLSEVKPLRLPKSVGAERTFSKNITSE-VFMEKDLYAIAQELHERMAKKGVSGK 289
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHAS--VLLKAELPVSLRLIGLRVTQFN 302
T+TLK+K + F V+TR+ T I+ +I H S +L + L S+RL+G+ ++ N
Sbjct: 290 TITLKIKYSDFSVQTRSKTFPYQIAQKVEIF-HLSKELLYQQPLENSVRLLGISISNLN 347
>gi|238506557|ref|XP_002384480.1| DNA-directed polymerase kappa, putative [Aspergillus flavus
NRRL3357]
gi|220689193|gb|EED45544.1| DNA-directed polymerase kappa, putative [Aspergillus flavus
NRRL3357]
Length = 573
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 109/279 (39%), Positives = 161/279 (57%), Gaps = 7/279 (2%)
Query: 29 LIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIEIAEELR 88
LI +P + KY+ + R +F +YDP F +AS+DEAYL+IT C E I + +R
Sbjct: 144 LICLPINHQKYSAKAQEIRAIFAQYDPLFESASIDEAYLNITAYCTENQIDPEDAVNRMR 203
Query: 89 TSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIG 148
V E+ ++ SAG+A N +AK+ S+ NKPNGQF +PNDR A++ F+ LP+RK+ G+G
Sbjct: 204 AEVLEQTKISVSAGIAANAKIAKIASNRNKPNGQFRVPNDRDAILEFMKDLPVRKVNGVG 263
Query: 149 KVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTN-TPQARF-RKS 206
+V E L D GI TC ++ + +LL +F F LGLG T P + RKS
Sbjct: 264 RVFEREL-DAVGIKTCGDIYSQRALLAKLFGEKAFHFLAQCYLGLGRTKIQPVENYERKS 322
Query: 207 ISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQ 266
+ +E TF+ K L KL IA+ L D+ + +GRTL LK+K A+FEV +R
Sbjct: 323 VGTESTFNEMGGKEALREKLWAIAQELEKDLTRTEFKGRTLVLKVKLATFEVLSRQCQPP 382
Query: 267 KYISSSEDILKHASVL---LKAELP-VSLRLIGLRVTQF 301
K + ++D+ + + L+ E+P + LRL+GLR T
Sbjct: 383 KAVFLAKDLYTFSLPMLEKLEKEIPNMRLRLLGLRCTNL 421
>gi|395802471|ref|ZP_10481724.1| DNA-directed DNA polymerase [Flavobacterium sp. F52]
gi|395435712|gb|EJG01653.1| DNA-directed DNA polymerase [Flavobacterium sp. F52]
Length = 360
Score = 179 bits (455), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 112/304 (36%), Positives = 175/304 (57%), Gaps = 8/304 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR+A+ G +A+K CPE+IFV F +Y S K+F +Y SLDEAYL
Sbjct: 53 ARKFGVRSAISGVLAKKYCPEIIFVRPRFDRYKEISSKIHKIFHEYTDLVEPLSLDEAYL 112
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T+ ++ S +A+E+RT ++ E GLT SAG++ N+ +AK+ SD NKPNGQ +
Sbjct: 113 DVTK-NKKGNPSASLLAQEIRTRIFNEVGLTASAGISVNKFVAKIASDYNKPNGQKTVNP 171
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFF 186
D V F+ LPIRK G+GKVT + + GI T ++ K L F S A F+
Sbjct: 172 DE--VEAFLEDLPIRKFYGVGKVTTEKMYQL-GIFTGTDLKSKSLEFLEKHFGKSGA-FY 227
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLRGR 245
V G+ ++ +R KS+++E TF V + + +L IA L +++ + G+
Sbjct: 228 YHVVRGIHNSEVKSSRIAKSVAAEHTFDVNLSSEIFMMEQLERIASSLEKRLKRYNVSGK 287
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFNED 304
T+TLK+K + F +TR+ TL +IS I+++ LL E + S+RL+G+ ++ N +
Sbjct: 288 TITLKIKYSDFSQQTRSKTLPYFISDKSLIMENVEELLYQEKMKDSVRLLGISLSNLNTE 347
Query: 305 KVRA 308
+A
Sbjct: 348 VKKA 351
>gi|381186729|ref|ZP_09894299.1| DNA polymerase IV [Flavobacterium frigoris PS1]
gi|379651573|gb|EIA10138.1| DNA polymerase IV [Flavobacterium frigoris PS1]
Length = 360
Score = 179 bits (454), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 109/299 (36%), Positives = 170/299 (56%), Gaps = 6/299 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR+A+ G +A+K CPELIFV F +Y S K+F +Y SLDEAYL
Sbjct: 53 ARKFGVRSAISGIMAKKYCPELIFVKPRFDRYKEISTKIHKIFHEYTDLVEPLSLDEAYL 112
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T+ + +G+ +AEE+R +++E GLT SAG++ N+ +AK+ SD NKPNGQ +
Sbjct: 113 DVTQNKKGNPSAGL-LAEEIRARIFKEVGLTASAGISINKFVAKIASDYNKPNGQKTVNP 171
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
D V F+ LPIRK G+GKVT + + G+ T ++ K + +F+
Sbjct: 172 DE--VNAFLEELPIRKFYGVGKVTTEKMYQL-GVFTGLDLKSKSVEFLEKHFGKSGNFYF 228
Query: 188 SVGLGLGSTNTPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLRGRT 246
+V G+ ++ R KS+++E TF V + + KL IA L + K + G+T
Sbjct: 229 NVVRGIHNSEVKSDRITKSVAAEHTFDVNLSSEIFMLEKLEGIAIALERRLNKHKVAGKT 288
Query: 247 LTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFNED 304
+TLK+K + F +TR+ T+ +IS IL+ LL E + S+RL+G+ ++ N +
Sbjct: 289 ITLKIKYSDFTQQTRSKTVPYFISDKGLILEIVKELLYQERMKDSVRLLGISLSNLNTE 347
>gi|85374810|ref|YP_458872.1| DNA polymerase IV [Erythrobacter litoralis HTCC2594]
gi|84787893|gb|ABC64075.1| putative DNA damage-inducible protein [Erythrobacter litoralis
HTCC2594]
Length = 382
Score = 179 bits (453), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 116/303 (38%), Positives = 169/303 (55%), Gaps = 11/303 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFGV++AMP A++LCP+LIFV F Y S R++F +Y P+ SLDEAYL
Sbjct: 69 ARRFGVKSAMPSVTAKRLCPDLIFVKHRFEAYREASARIREIFNRYTPHVEPLSLDEAYL 128
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-P 126
D+T+ + G S A+ +R ++ EE GLT SAGV+ N+ LAK+ SD NKP+G V+ P
Sbjct: 129 DVTDDLQAVG-SATGTAQAIRKAIREETGLTASAGVSYNKFLAKLASDQNKPDGLCVIRP 187
Query: 127 NDRMAVMTFISSLPIRKIGGIG-KVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADF 185
+ A F+ SLPIR+ G+G K E + R GI+T ++ K S D+
Sbjct: 188 GEGAA---FVQSLPIRRFHGVGPKGAEKMAR--LGIDTGADLAGKDLAWLRQNFGSFGDY 242
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRK-LAEIAEMLSADMQKEGLRG 244
G+ R RKS+ ERTFS + + R+ L I ++ +++ RG
Sbjct: 243 LYRAARGIDLRPIRTNRSRKSVGGERTFSQDQHEPDELRETLERIIAIVWERIERSKARG 302
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSL--RLIGLRVTQFN 302
RT+TLK+K F TRA +L Y+S ++ A LL+A+LP+ L RL+GL ++
Sbjct: 303 RTITLKMKYNDFRTITRAQSLPHYVSGQDEFASVARDLLEAQLPLPLPIRLMGLTLSNLE 362
Query: 303 EDK 305
D+
Sbjct: 363 RDE 365
>gi|398018133|ref|XP_003862253.1| DNA polymerase kappa, putative [Leishmania donovani]
gi|322500482|emb|CBZ35559.1| DNA polymerase kappa, putative [Leishmania donovani]
Length = 598
Score = 179 bits (453), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 114/325 (35%), Positives = 177/325 (54%), Gaps = 14/325 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++GVR+ MPGFI +KLCPELI VP DF Y + + +YD F++ LDE +
Sbjct: 185 ARQYGVRSGMPGFIGKKLCPELIIVPNDFPAYQREAARVHSIASRYDAQFVSVGLDELTM 244
Query: 68 DITEVCRE-RGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VL 125
D+T+ +E +S +IA + R V+ + LT S G+ P +LAK+ S++NKPNGQ +
Sbjct: 245 DVTKYLQEFPAVSASDIAHDFRDEVFLKTQLTSSGGIGPTSILAKIASNVNKPNGQHEIT 304
Query: 126 PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADF 185
R V+ ++ +P+RKI GIG E L I+TC +L+ LL +F T
Sbjct: 305 LLTREEVINYVRDIPLRKIPGIGYAQEMTL-GALHIHTCGGLLEHKYLLAYLFREKTLAH 363
Query: 186 FLSVGLGLGST-NTPQARFRKSISSERTFS----VTEDKALLYRKLAEIAEMLSADMQKE 240
+LSVGLGL T + + + R+S+ E +FS E L+RKL E + ++
Sbjct: 364 YLSVGLGLAETFSLRKHQARQSVGKETSFSEPLPSPEAFTRLFRKLLEQCHVRCV---RD 420
Query: 241 GLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL--PVSLRLIGLRV 298
L+ R +TL LK +++ +VTL + + + L+ + LL+ L RLIG+R+
Sbjct: 421 HLQPRKMTLVLKYRTYDTEQFSVTLPSHTNDLKVWLEASQKLLEPHLLHYAEFRLIGVRL 480
Query: 299 TQFNE-DKVRAPSDPTQKTLTNFMT 322
+F + D A + T+ LT +T
Sbjct: 481 QRFTDTDDDHAGLNSTRDALTGALT 505
>gi|294901592|ref|XP_002777428.1| DNA polymerase IV, putative [Perkinsus marinus ATCC 50983]
gi|239885064|gb|EER09244.1| DNA polymerase IV, putative [Perkinsus marinus ATCC 50983]
Length = 496
Score = 178 bits (452), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 142/426 (33%), Positives = 211/426 (49%), Gaps = 64/426 (15%)
Query: 8 ARRFGVRAAMPGFIARKLC----PELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLD 63
AR++GVRAAMPGFIAR+LC EL F P D +Y S + + Y P M SLD
Sbjct: 55 ARKYGVRAAMPGFIARELCRRQGVELRFKPVDMPRYQAASKIFKDTVSLYGPMKML-SLD 113
Query: 64 EAYLDITEVCRERG-----ISGIEIAEELRTSVYEE-----AGLTCSAGVAPNRL-LAKV 112
EAY+DIT E IS +E A L + + EE +GLTCSAG+A LAK+
Sbjct: 114 EAYIDITAKVAEAAMVDESISEVEAASLLVSRMREEVCENSSGLTCSAGIARGCFRLAKM 173
Query: 113 CSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGS 172
SD+NKPNGQF++P ++ ++ S+PIRK+ G+G+V+E L GI+ +++ K +
Sbjct: 174 ASDVNKPNGQFMVPTTTQGMLEWLHSMPIRKLHGVGRVSERELSAGLGIHKVGDIIIKAA 233
Query: 173 LLCAVFSHSTADFFLSVGLGLGSTNTPQARFR---KSISSERTFSVTEDKALLYRKLAEI 229
L S S + + +G+ A KSIS ER+ S + + Y L E+
Sbjct: 234 ELLHAMSSSGGHWLIDAAMGVADMEDVTAAAESGPKSISQERSLSTAKSGSAAY--LHEV 291
Query: 230 AEMLSADM-----QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK 284
E L + + +KE GR +T+KLKT ++V+ ++ TL++ + S + AS L+
Sbjct: 292 LEELCSQVMELCAEKEQY-GRCVTVKLKTFEWDVKQKSNTLKREVRSGRLLYSAASELMS 350
Query: 285 ---AELPVSLRLIGLRVTQFNEDKVRAPSDPTQKTLTNFMTSGHASKKIVGDQNSLGSDI 341
A L +RL+G+RV+ F + P Q TL +F+ + AS V
Sbjct: 351 TALATLKKPIRLLGVRVSSF---QTAVPQG--QSTLGDFLAAHKASSSRVA--------- 396
Query: 342 NDDCLIDDKETSVSLDVSETNNYEFGDPVCDNSLPDLNDENCSFSNKISE--VEKIHENE 399
D+C+ ++E G V N C+F NK ++ E HEN
Sbjct: 397 VDECIT-------------IESHEHGGIV-----EAWNCTVCTFLNKATDRRCEMCHENR 438
Query: 400 VSQLLE 405
V + E
Sbjct: 439 VGPVAE 444
>gi|421854046|ref|ZP_16286683.1| DNA polymerase IV [Acetobacter pasteurianus subsp. pasteurianus LMG
1262 = NBRC 106471]
gi|371477685|dbj|GAB31886.1| DNA polymerase IV [Acetobacter pasteurianus subsp. pasteurianus LMG
1262 = NBRC 106471]
Length = 359
Score = 178 bits (452), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 119/299 (39%), Positives = 166/299 (55%), Gaps = 15/299 (5%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR+AMP A++ CP LIFVP F Y S +F +Y P SLDEAYL
Sbjct: 51 ARKFGVRSAMPSVQAQRKCPHLIFVPPRFDVYRAVSAQIHAIFARYTPLIQPLSLDEAYL 110
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T R S IAEE+R ++ E GLT SAGV+ N+ LAK+ SD KPNGQFV+P
Sbjct: 111 DVTHPLLPRP-SATAIAEEIRAAILRETGLTASAGVSYNKFLAKLASDYRKPNGQFVIPP 169
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL--LCAVFSHSTADF 185
+R F++SLP+ G+G T +R GI+T + L++ SL L F + A +
Sbjct: 170 NRGE--DFVASLPVNAFHGVGPATARRMR-TLGIHTGAD-LRRFSLDILRQHFGKAAAFY 225
Query: 186 FLSVGLGLGSTNTP--QARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGL 242
+ G+ G + P R RKS+ E TF A L+ L E+A + A QK L
Sbjct: 226 Y---GIARGKDDRPVEPNRPRKSLGKEVTFEQDLRTPAELHAALRELASKVWAGCQKRNL 282
Query: 243 RGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVT 299
GRT+TLKL+ F+ TR+++L + E + + A LL LPV +RL+G+ ++
Sbjct: 283 TGRTITLKLRYTDFDQCTRSLSLADPVQDEEILAEMACRLLAPLLPVRAPVRLLGITLS 341
>gi|407842871|gb|EKG01200.1| DNA polymerase kappa, putative,DNA polymerase IV, putative
[Trypanosoma cruzi]
Length = 514
Score = 178 bits (451), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 111/313 (35%), Positives = 171/313 (54%), Gaps = 14/313 (4%)
Query: 3 FELLS-----ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNF 57
F++LS ARR+GVR+ MPG+I KLCP L+ VPTDF Y + + R + YDPNF
Sbjct: 147 FDMLSTTNYVARRYGVRSGMPGYIGVKLCPSLVIVPTDFDAYHAEAAVVRGIAAAYDPNF 206
Query: 58 MAASLDEAYLDITEVCRER-GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDI 116
+ LDE +++T ++ G++ ++A E R V+ E LT SAG+ P LAK+ S+
Sbjct: 207 TSVGLDELTMEVTAYLQQHPGMTAGDVASEFRARVFAETQLTASAGIGPTATLAKIASNY 266
Query: 117 NKPNGQFVLP-NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLC 175
KPNGQ L R VM F+ LP+R + GIG V + +LR V GI TC +L+K LLC
Sbjct: 267 EKPNGQHELRLRTRQDVMEFMKDLPVRTVPGIGPVQDAVLR-VLGIRTCGCVLRKKGLLC 325
Query: 176 AVFSHSTADFFLSVGLGLGSTNTPQAR---FRKSISSERTFS-VTEDKALLYRKLAEIAE 231
+F T F+LS GLG+ +N R +K++ E TF + +A L + + E+
Sbjct: 326 FLFPEKTFRFYLSAGLGVVRSNADLMRSDGTQKTMGHEITFKRRLKSEAELRQIVLEVLV 385
Query: 232 MLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV-- 289
+ + + + +TL +K +FE ++TL + + +L+ LL+ L
Sbjct: 386 AVHNTLLLRRVAAQRVTLLMKRRTFENHQFSLTLGEATNDFAALLEATRKLLQPHLASFD 445
Query: 290 SLRLIGLRVTQFN 302
RL+G+R+ +
Sbjct: 446 KFRLVGVRLGKLQ 458
>gi|375012202|ref|YP_004989190.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Owenweeksia hongkongensis DSM 17368]
gi|359348126|gb|AEV32545.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Owenweeksia hongkongensis DSM 17368]
Length = 361
Score = 178 bits (451), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 113/303 (37%), Positives = 174/303 (57%), Gaps = 12/303 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++G+R+AM IA + CP +IFV F KY S R++F +Y SLDEAYL
Sbjct: 53 ARKYGIRSAMASSIAYRKCPHIIFVKPHFEKYKEVSKQIREIFFEYTDLVEPLSLDEAYL 112
Query: 68 DITEVCRERGIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQ-FVL 125
D+TE ++GI+ IA+E+R ++EE L+ SAG++ N+ +AKV SDINKPNGQ ++
Sbjct: 113 DVTE--NKKGIATATRIAKEIRQRIWEETQLSASAGISINKFVAKVASDINKPNGQKTIM 170
Query: 126 PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTAD 184
P+D V+ F+ +LPI+K GIG+ T ++ + GI+ ++ Q LL F S
Sbjct: 171 PDD---VIPFLENLPIKKFYGIGEKTAEKMKKL-GIHFGRDLKQWDLPLLVREFGKSGTH 226
Query: 185 FFLSVGLGLGSTNTPQARFRKSISSERT-FSVTEDKALLYRKLAEIAEMLSADMQKEGLR 243
++ ++ GL + R RKSI +ERT F ++ L +L +I +L ++
Sbjct: 227 YY-NIVRGLQKSTVKPDRIRKSIGAERTFFDDIHAESDLKEELEKIMTILHKRIESSEAS 285
Query: 244 GRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELP-VSLRLIGLRVTQFN 302
G+T+TLKLK+ FE TR+ T YI+S E+I LL P +RL+G+ ++
Sbjct: 286 GKTVTLKLKSFDFEQHTRSFTFDHYINSQEEIFDKIIQLLYQPFPEKPVRLLGITLSNLK 345
Query: 303 EDK 305
D+
Sbjct: 346 NDE 348
>gi|71411339|ref|XP_807923.1| DNA polymerase kappa [Trypanosoma cruzi strain CL Brener]
gi|70872023|gb|EAN86072.1| DNA polymerase kappa, putative [Trypanosoma cruzi]
Length = 514
Score = 177 bits (450), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 116/341 (34%), Positives = 180/341 (52%), Gaps = 26/341 (7%)
Query: 3 FELLS-----ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNF 57
F++LS ARR+GVR+ MPG+I KLCP L+ VPTDF Y + + R + YDPNF
Sbjct: 147 FDMLSTTNYVARRYGVRSGMPGYIGVKLCPSLVIVPTDFDAYHAEAAVVRGIAAAYDPNF 206
Query: 58 MAASLDEAYLDITEVCRER-GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDI 116
+ LDE +++T ++ G++ ++A E R V+ E LT SAG+ P LAK+ S+
Sbjct: 207 TSVGLDELTMEVTAYLQQHPGMTAGDVASEFRARVFAETQLTASAGIGPTATLAKIASNY 266
Query: 117 NKPNGQFVLP-NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLC 175
KPNGQ L R V+ F+ LP+R + GIG V + +LR V GI TC ML+K LLC
Sbjct: 267 EKPNGQHELRLRTRQDVVEFMKDLPVRAVPGIGPVQDAVLR-VLGIRTCGCMLRKKGLLC 325
Query: 176 AVFSHSTADFFLSVGLGLGSTNTPQAR---FRKSISSERTFS-VTEDKALLYRKLAEIAE 231
+F T F+LS GLG+ +N + R +K++ E TF + +A L + + E+
Sbjct: 326 FLFPEKTFRFYLSAGLGVVRSNADRMRSDGTQKTVGHEITFKRRLKSEAELKQIVLEVLV 385
Query: 232 MLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV-- 289
+ + + + +TL +K +FE ++TL + + + + LL+ L
Sbjct: 386 AVHNTLLLRRVAAQRVTLLMKRRTFENHQFSLTLGEATNDFAALREATRKLLQPHLASFE 445
Query: 290 SLRLIGLRVTQFN------------EDKVRAPSDPTQKTLT 318
+ RL+G+R+ + E K R P+ T L+
Sbjct: 446 NFRLVGVRLGKLQSTSRKKLISGVEERKGRPPARITASVLS 486
>gi|401424998|ref|XP_003876984.1| putative DNA polymerase IV [Leishmania mexicana MHOM/GT/2001/U1103]
gi|322493228|emb|CBZ28513.1| putative DNA polymerase IV [Leishmania mexicana MHOM/GT/2001/U1103]
Length = 598
Score = 177 bits (450), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 112/325 (34%), Positives = 176/325 (54%), Gaps = 14/325 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++GVR+ MPGFI +KLCPELI VP DF Y + + +YD F++ LDE +
Sbjct: 185 ARQYGVRSGMPGFIGKKLCPELIIVPNDFPAYQREAARVHSIASRYDAQFVSVGLDELTM 244
Query: 68 DITEVCRE-RGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VL 125
D+T+ +E +S +IA + R V+ + LT S G+ P +LAK+ S++NKPNGQ +
Sbjct: 245 DVTKYLQEFPAVSASDIAHDFRNEVFIKTQLTSSGGIGPTSILAKIASNVNKPNGQHEIT 304
Query: 126 PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADF 185
R V+ ++ +P+RKI GIG E L I+TC +L+ LL +F T
Sbjct: 305 LLTREEVINYVRDIPLRKIPGIGYAQEMTL-GALHIHTCGGLLEHKYLLAYLFREKTLAH 363
Query: 186 FLSVGLGLGST-NTPQARFRKSISSERTFS----VTEDKALLYRKLAEIAEMLSADMQKE 240
+LSVGLGL T + + + R+S+ E +FS E L+RKL E + ++
Sbjct: 364 YLSVGLGLAETFSLRKHQARQSVGKETSFSEPLPSPEAFTRLFRKLLEQCHVRCV---RD 420
Query: 241 GLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL--PVSLRLIGLRV 298
L+ R +TL LK +++ +VTL + + + L+ + LL+ L RL+G+R+
Sbjct: 421 HLQPRKMTLVLKYRTYDTEQFSVTLSSHTNDLKVWLEASQKLLEPHLLHYAEFRLVGVRL 480
Query: 299 TQFNE-DKVRAPSDPTQKTLTNFMT 322
+F + D + T+ LT +T
Sbjct: 481 QRFTDTDDDHTGLNSTRDALTGALT 505
>gi|71415114|ref|XP_809635.1| DNA polymerase kappa [Trypanosoma cruzi strain CL Brener]
gi|70874047|gb|EAN87784.1| DNA polymerase kappa, putative [Trypanosoma cruzi]
Length = 514
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 118/341 (34%), Positives = 177/341 (51%), Gaps = 26/341 (7%)
Query: 3 FELLS-----ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNF 57
F++LS ARR+GVR+ MPG+I KLCP L+ VPTDF Y + + R + YDPNF
Sbjct: 147 FDMLSTTNYVARRYGVRSGMPGYIGVKLCPSLVIVPTDFDAYHAEAAVVRGIAAAYDPNF 206
Query: 58 MAASLDEAYLDITEVCRER-GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDI 116
+ LDE +++T ++ G++ ++A E R V+ E LT SAG+ P LAK+ S+
Sbjct: 207 TSVGLDELTMEVTAYLQQHPGMTAGDVASEFRARVFAETQLTASAGIGPTATLAKIASNY 266
Query: 117 NKPNGQFVLP-NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLC 175
KPNGQ L R VM F+ LP+R + GIG V + ILR V GI TC ML+K LLC
Sbjct: 267 EKPNGQHELRLRTRQDVMEFMKDLPVRTVPGIGPVQDAILR-VLGIRTCGCMLRKKGLLC 325
Query: 176 AVFSHSTADFFLSVGLGLGSTNTPQAR---FRKSISSERTFS-VTEDKALLYRKLAEIAE 231
+F T F+LS GLG+ +N R +K + E TF + +A L + + E+
Sbjct: 326 FLFPEKTFRFYLSAGLGVVRSNADLMRSDGTQKKMGHEITFKRRLKSEAELKQIVLEVLV 385
Query: 232 MLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV-- 289
+ + + + +TL +K +FE ++TL + + + + LL+ L
Sbjct: 386 AVHNTLLLRRVAAQRVTLLMKRRTFENHQFSLTLGEATNDFAALREATRKLLQPHLTSFD 445
Query: 290 SLRLIGLRVTQFN------------EDKVRAPSDPTQKTLT 318
RL+G+R+ + E K R P+ T L+
Sbjct: 446 KFRLVGVRLGKLQSTSCKKLISGVEERKGRPPARITASVLS 486
>gi|228472365|ref|ZP_04057130.1| DNA polymerase IV [Capnocytophaga gingivalis ATCC 33624]
gi|228276233|gb|EEK14968.1| DNA polymerase IV [Capnocytophaga gingivalis ATCC 33624]
Length = 367
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 108/298 (36%), Positives = 174/298 (58%), Gaps = 8/298 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARR+GVR+AM G +A++LCP LIFV F +Y S R +F +Y SLDEAYL
Sbjct: 48 ARRYGVRSAMAGAMAKQLCPSLIFVKPRFDRYREVSMQIRAIFHEYTDLVEPLSLDEAYL 107
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T ++ S IA+++R ++E+ GLT SAG++ N+ +AK+ SD NKPNGQ +P
Sbjct: 108 DVTTNKKDLP-SATLIAQQIRAKIFEQTGLTASAGISVNKFIAKIASDYNKPNGQKTVPP 166
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
++ F++ L I+K GIGKVT + GI T ++ K + + ++F
Sbjct: 167 QE--ILDFLAPLDIKKFYGIGKVTAQKMYQK-GIFTGADLRAKSLEELQTYFGNNGEYFY 223
Query: 188 SVGLGLGSTNTPQARFRKSISSERTF--SVTEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
+ G+ + R RKSI E TF ++T ++ L + L E+ E ++ ++++ L +
Sbjct: 224 QIARGIHLSAVQPFRLRKSIGVEHTFETNITSER-FLEKPLKELCEEVALRLKEKKLLAK 282
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFN 302
T+TLKLK + F+ +TR+ ++ ++I +S DI LL E L S+RL+G+ ++ FN
Sbjct: 283 TVTLKLKYSDFKQQTRSRSIPEFIGNSTDIYAVVEELLYQEKLYESVRLVGVSLSHFN 340
>gi|326335225|ref|ZP_08201421.1| DNA-directed DNA polymerase IV [Capnocytophaga sp. oral taxon 338
str. F0234]
gi|325692633|gb|EGD34576.1| DNA-directed DNA polymerase IV [Capnocytophaga sp. oral taxon 338
str. F0234]
Length = 367
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 110/304 (36%), Positives = 172/304 (56%), Gaps = 10/304 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++GV +AM G IAR+LCP LIFV F +Y S R +F +Y SLDEAYL
Sbjct: 48 ARKYGVHSAMSGVIARRLCPTLIFVKPRFERYKEISSRIRNIFYEYTDLVEPLSLDEAYL 107
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T ++ S IAE++R+ ++E+ GLT SAG++ N+ +AK+ SD NKPNGQ +P
Sbjct: 108 DVT-TNKKNLSSATLIAEQIRSKIFEQTGLTASAGISVNKFIAKIASDYNKPNGQKTVPP 166
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
+ V++F+ L ++K GIGKVT + GI T ++ K + ++ ++F
Sbjct: 167 SK--VLSFLEGLDVKKFYGIGKVTAEKMYQK-GIFTGADLRAKSLEELQSYFGNSGEYFY 223
Query: 188 SVGLGLGSTNTPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLRGRT 246
+ G+ + R KSI E TF + + L +++E +S + K+ L +T
Sbjct: 224 QIARGIHLSPVQPFRLIKSIGVEHTFEKNISSEIFMTEPLQQLSEEVSLRLSKKKLLAKT 283
Query: 247 LTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFN--- 302
+TLKLK + F+++TR+ T+ ++I S I LL E L S+RL+G+ ++ FN
Sbjct: 284 VTLKLKYSDFKIQTRSRTIPEFIGDSPTIYHIVKELLYQEKLRESIRLLGVSLSNFNYPI 343
Query: 303 -EDK 305
EDK
Sbjct: 344 KEDK 347
>gi|120437709|ref|YP_863395.1| DNA polymerase IV 2 [Gramella forsetii KT0803]
gi|117579859|emb|CAL68328.1| DNA polymerase IV 2 [Gramella forsetii KT0803]
Length = 363
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 115/303 (37%), Positives = 178/303 (58%), Gaps = 12/303 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR+AM IA++ CP+LIFV F +Y S R++F +Y SLDEAYL
Sbjct: 50 ARKFGVRSAMSSVIAKRNCPDLIFVKPRFERYKEISGQIREIFFEYTDLVEPLSLDEAYL 109
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQ-FVLP 126
D+TE ++ S IA+++R + E+ GL SAG++ N+ +AK+ SD+NKPNGQ V P
Sbjct: 110 DVTE-NKKGNPSATLIAKQIRDRIKEKTGLNASAGISINKFIAKIASDVNKPNGQKTVQP 168
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVT-EHILRDVFGINTCEEM-LQKGSLLCAVFSHSTAD 184
+ V+ F+ L IRK G+GKVT E + R GI T +++ L+ L F S
Sbjct: 169 EE---VIAFLEELDIRKFYGVGKVTAEKMYR--LGIFTGKDLKLKSEEYLTEHFGKSGTH 223
Query: 185 FFLSVGLGLGSTNTPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLR 243
F+ +V G+ + R RKS+ +ERTF+ + + +L IAE + + K +
Sbjct: 224 FY-NVVRGIHLSEVKPHRIRKSLGAERTFNENISSEIFMLERLENIAEEIERRLTKSKVA 282
Query: 244 GRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFN 302
G+T+TLK+K + F +TR+ T+ YI++ + IL+ A LL E + S+RL+G+ ++ N
Sbjct: 283 GKTITLKIKYSDFTQQTRSRTINFYIANKDLILEIAKELLYQEKMKNSVRLLGISLSNLN 342
Query: 303 EDK 305
+K
Sbjct: 343 TEK 345
>gi|146092011|ref|XP_001470183.1| putative DNA polymerase IV [Leishmania infantum JPCM5]
gi|134084977|emb|CAM69375.1| putative DNA polymerase IV [Leishmania infantum JPCM5]
Length = 598
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 113/325 (34%), Positives = 176/325 (54%), Gaps = 14/325 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++GVR+ MPGFI +KLCPELI VP DF Y + + +YD F++ LDE +
Sbjct: 185 ARQYGVRSGMPGFIGKKLCPELIIVPNDFPAYQREAARVHSIASRYDAQFVSVGLDELTM 244
Query: 68 DITEVCRE-RGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VL 125
D+T+ +E +S +IA + R V+ + LT S G+ P +LAK+ S++NKPNGQ +
Sbjct: 245 DVTKYLQEFPAVSASDIAHDFRDEVFLKTQLTSSGGIGPTSILAKIASNVNKPNGQHEIT 304
Query: 126 PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADF 185
R V+ ++ +P+RKI GIG E L I+TC +L+ LL +F T
Sbjct: 305 LLTREEVINYVRDIPLRKIPGIGYAQEMTL-GALHIHTCGGLLEHKYLLAYLFREKTLAH 363
Query: 186 FLSVGLGLGST-NTPQARFRKSISSERTFS----VTEDKALLYRKLAEIAEMLSADMQKE 240
+LSVGLGL T + + + R+S+ E +FS E L+RKL E + ++
Sbjct: 364 YLSVGLGLAETFSLRKHQARQSVGKETSFSEPLPSPEAFTRLFRKLLEQCHVRCV---RD 420
Query: 241 GLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL--PVSLRLIGLRV 298
L+ R +TL LK +++ +VTL + + + L+ + LL+ L RLIG+R+
Sbjct: 421 HLQPRKMTLVLKYRTYDTEQFSVTLPSHTNDLKVWLEASQKLLEPHLLHYAEFRLIGVRL 480
Query: 299 TQFNE-DKVRAPSDPTQKTLTNFMT 322
+F + D A + + LT +T
Sbjct: 481 QRFTDTDDDHAGLNSARDALTGALT 505
>gi|340377599|ref|XP_003387317.1| PREDICTED: DNA polymerase kappa-like, partial [Amphimedon
queenslandica]
Length = 723
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 94/233 (40%), Positives = 151/233 (64%), Gaps = 6/233 (2%)
Query: 82 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 141
++ E+R ++ LT SAG+A N++LAK+ SD+NKPNGQ+++P R ++ FI LPI
Sbjct: 311 KVVSEIRERIHLTTQLTASAGIASNKMLAKIASDMNKPNGQYMIPPSREKILEFIRKLPI 370
Query: 142 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQA 201
RK+ GIGKVTE +L + GI T ++ K LL +FS + D+F+++ LG+GS
Sbjct: 371 RKVSGIGKVTEKML-NALGIVTGADIYDKRGLLRLMFSKCSYDYFMNICLGIGSCTVHSE 429
Query: 202 RFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTR 261
RKSIS+ERTF + L++K ++ L+ ++++ ++G+T+TLKLKT++FEV+ R
Sbjct: 430 WERKSISTERTFPDIWKPSELFQKCHKLCYSLTEEVEESNIKGKTVTLKLKTSAFEVKQR 489
Query: 262 AVTLQKYISSSEDILKHASVLLKAELP----VSLRLIGLRVTQFNEDKVRAPS 310
++T ISS DI K A +LL+ E+ + LRL+G+R++ E ++PS
Sbjct: 490 SMTFPNPISSFADIHKAARILLETEMKNNSQLKLRLMGVRLSSL-EGTSKSPS 541
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 49/97 (50%), Positives = 61/97 (62%), Gaps = 9/97 (9%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARR+GVRAAMPGFIA+KLCP+L+ V + F+KY S R++ YDP F + LDEAYL
Sbjct: 133 ARRYGVRAAMPGFIAKKLCPQLVIVKSHFSKYQEVSQTVREILSNYDPLFSSVGLDEAYL 192
Query: 68 DITEVCRE--RGISGIEIAEELRTSVYEEAGLTCSAG 102
DITE E RG +E + V EE +T S G
Sbjct: 193 DITEYVTELMRG-------KEEQVPVEEENRVTQSFG 222
>gi|421850035|ref|ZP_16283004.1| DNA polymerase IV [Acetobacter pasteurianus NBRC 101655]
gi|371459135|dbj|GAB28207.1| DNA polymerase IV [Acetobacter pasteurianus NBRC 101655]
Length = 360
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 118/299 (39%), Positives = 165/299 (55%), Gaps = 15/299 (5%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR+AMP A++ CP LIFVP F Y S +F +Y P SLDEAYL
Sbjct: 52 ARKFGVRSAMPSVQAQRKCPHLIFVPPRFDVYRAVSAQIHAIFARYTPLIQPLSLDEAYL 111
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T R S IAEE+R ++ E GLT SAGV+ N+ LAK+ SD KPNGQFV+P
Sbjct: 112 DVTHPLLPRP-SATAIAEEIRAAILRETGLTASAGVSYNKFLAKLASDYRKPNGQFVIPP 170
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL--LCAVFSHSTADF 185
+R F++SLP+ G+G T + GI+T + L++ SL L F + A +
Sbjct: 171 NRGE--DFVASLPVNAFHGVGPATARRM-HTLGIHTGAD-LRRFSLDILRQHFGKAAAFY 226
Query: 186 FLSVGLGLGSTNTP--QARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGL 242
+ G+ G + P R RKS+ E TF A L+ L E+A + A QK L
Sbjct: 227 Y---GIARGKDDRPVEPNRPRKSLGKEVTFEQDLRTPAELHAALRELASKVWAGCQKRNL 283
Query: 243 RGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVT 299
GRT+TLKL+ F+ TR+++L + E + + A LL LPV +RL+G+ ++
Sbjct: 284 TGRTITLKLRYTDFDQCTRSLSLADPVQDQEILAEMACRLLAPLLPVRAPVRLLGITLS 342
>gi|258541348|ref|YP_003186781.1| DNA polymerase IV [Acetobacter pasteurianus IFO 3283-01]
gi|384041269|ref|YP_005480013.1| DNA polymerase IV [Acetobacter pasteurianus IFO 3283-12]
gi|384049784|ref|YP_005476847.1| DNA polymerase IV [Acetobacter pasteurianus IFO 3283-03]
gi|384052894|ref|YP_005485988.1| DNA polymerase IV [Acetobacter pasteurianus IFO 3283-07]
gi|384056126|ref|YP_005488793.1| DNA polymerase IV [Acetobacter pasteurianus IFO 3283-22]
gi|384058767|ref|YP_005497895.1| DNA polymerase IV [Acetobacter pasteurianus IFO 3283-26]
gi|384062061|ref|YP_005482703.1| DNA polymerase IV [Acetobacter pasteurianus IFO 3283-32]
gi|384118137|ref|YP_005500761.1| DNA polymerase IV [Acetobacter pasteurianus IFO 3283-01-42C]
gi|256632426|dbj|BAH98401.1| DNA polymerase IV [Acetobacter pasteurianus IFO 3283-01]
gi|256635483|dbj|BAI01452.1| DNA polymerase IV [Acetobacter pasteurianus IFO 3283-03]
gi|256638538|dbj|BAI04500.1| DNA polymerase IV [Acetobacter pasteurianus IFO 3283-07]
gi|256641592|dbj|BAI07547.1| DNA polymerase IV [Acetobacter pasteurianus IFO 3283-22]
gi|256644647|dbj|BAI10595.1| DNA polymerase IV [Acetobacter pasteurianus IFO 3283-26]
gi|256647702|dbj|BAI13643.1| DNA polymerase IV [Acetobacter pasteurianus IFO 3283-32]
gi|256650755|dbj|BAI16689.1| DNA polymerase IV [Acetobacter pasteurianus IFO 3283-01-42C]
gi|256653746|dbj|BAI19673.1| DNA polymerase IV [Acetobacter pasteurianus IFO 3283-12]
Length = 359
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 118/299 (39%), Positives = 165/299 (55%), Gaps = 15/299 (5%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR+AMP A++ CP LIFVP F Y S +F +Y P SLDEAYL
Sbjct: 51 ARKFGVRSAMPSVQAQRKCPHLIFVPPRFDVYRAVSAQIHAIFARYTPLIQPLSLDEAYL 110
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T R S IAEE+R ++ E GLT SAGV+ N+ LAK+ SD KPNGQFV+P
Sbjct: 111 DVTHPLLPRP-SATAIAEEIRAAILRETGLTASAGVSYNKFLAKLASDYRKPNGQFVIPP 169
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL--LCAVFSHSTADF 185
+R F++SLP+ G+G T + GI+T + L++ SL L F + A +
Sbjct: 170 NRGE--DFVASLPVNAFHGVGPATARRM-HTLGIHTGAD-LRRFSLDILRQHFGKAAAFY 225
Query: 186 FLSVGLGLGSTNTP--QARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGL 242
+ G+ G + P R RKS+ E TF A L+ L E+A + A QK L
Sbjct: 226 Y---GIARGKDDRPVEPNRPRKSLGKEVTFEQDLRTPAELHAALRELASKVWAGCQKRNL 282
Query: 243 RGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVT 299
GRT+TLKL+ F+ TR+++L + E + + A LL LPV +RL+G+ ++
Sbjct: 283 TGRTITLKLRYTDFDQCTRSLSLADPVQDQEILAEMACRLLAPLLPVRAPVRLLGITLS 341
>gi|409122245|ref|ZP_11221640.1| DNA polymerase IV 2 [Gillisia sp. CBA3202]
Length = 366
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 114/303 (37%), Positives = 172/303 (56%), Gaps = 12/303 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGV++AM IA++ CP LIFV F +Y S R +F +Y SLDEAYL
Sbjct: 53 ARKFGVKSAMSSVIAKRNCPNLIFVKARFDRYKEISSQIRAIFLEYTDLVEPLSLDEAYL 112
Query: 68 DITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQ-FVL 125
D+TE ++GI S IA+E+R + E+ GL SAG++ N+ +AKV SDINKPNGQ V
Sbjct: 113 DVTE--NKKGIPSATLIAQEIREKIKEKTGLNASAGISINKFIAKVASDINKPNGQKTVN 170
Query: 126 PNDRMAVMTFISSLPIRKIGGIGKVT-EHILRDVFGINTCEEMLQKGSLLCAVFSHSTAD 184
P + V F+ L IRK G+GKVT E + R GI ++ K +
Sbjct: 171 PEE---VEEFLEQLQIRKFYGVGKVTAEKMYR--LGIFKGIQLKDKSEEFLTENFGKSGK 225
Query: 185 FFLSVGLGLGSTNTPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLR 243
++ +V G+ ++ R RKS+ +ERTFS + + +L IAE + ++ +
Sbjct: 226 YYYNVVRGIHNSEVKADRIRKSLGAERTFSENIASEIFMMERLENIAEEIERRLKGSKVA 285
Query: 244 GRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHAS-VLLKAELPVSLRLIGLRVTQFN 302
G+T+TLK+K + F ++TR+ TL YI+S IL A +L + ++ S+RL+G+ ++ N
Sbjct: 286 GKTVTLKIKYSDFTLQTRSKTLPYYIASKAVILDTAKELLFQEKMKNSVRLLGITLSNLN 345
Query: 303 EDK 305
K
Sbjct: 346 TGK 348
>gi|340617508|ref|YP_004735961.1| DNA polymerase IV [Zobellia galactanivorans]
gi|339732305|emb|CAZ95573.1| DNA polymerase IV [Zobellia galactanivorans]
Length = 366
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 114/307 (37%), Positives = 176/307 (57%), Gaps = 8/307 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++GVR+AM +A++ CP LIFV F +Y S R +F +Y SLDEAYL
Sbjct: 53 ARKYGVRSAMSSVLAQRNCPGLIFVKPRFERYKEISHQIRNIFYEYTDLVEPLSLDEAYL 112
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T V ++ S IA+E+R +Y+ GL SAG++ N+ +AKV SDINKPNGQ +
Sbjct: 113 DVT-VNKKGNPSASLIAKEIRQKIYDTIGLNASAGISINKFIAKVASDINKPNGQKTVNP 171
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM-LQKGSLLCAVFSHSTADFF 186
+ +++ F+ L IRK G+GKVT + + GI T +++ L+ L F + ++
Sbjct: 172 EEVSL--FLEELEIRKFYGVGKVTAEKMYKL-GIFTGKDLKLKTLEFLEGNFGKN-GSYY 227
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLRGR 245
+V G+ ++ R KS+ +ERTF+ + + +L IAE L ++K + G+
Sbjct: 228 YNVVRGIHTSPVKPHRIPKSVGAERTFNENLSSEIFMLERLDHIAEELEKRLKKANIAGK 287
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFNED 304
T+TLK+K + F + TR+ TL YISS IL+ A LL E L S+RL+G+ + N +
Sbjct: 288 TVTLKIKYSDFTLNTRSKTLAYYISSKSLILETAKELLYQEKLQNSVRLLGISLANLNTE 347
Query: 305 KVRAPSD 311
K +D
Sbjct: 348 KKEKTTD 354
>gi|427409478|ref|ZP_18899680.1| hypothetical protein HMPREF9718_02154 [Sphingobium yanoikuyae ATCC
51230]
gi|425711611|gb|EKU74626.1| hypothetical protein HMPREF9718_02154 [Sphingobium yanoikuyae ATCC
51230]
Length = 365
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 114/296 (38%), Positives = 171/296 (57%), Gaps = 11/296 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR+AMPG AR+LCPEL+FV F Y S R +F ++ SLDEAYL
Sbjct: 54 ARKFGVRSAMPGARARRLCPELLFVKPRFEVYRSVSAQIRAIFARFTDMIQPLSLDEAYL 113
Query: 68 DITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP 126
D+T+ + GI S ++A+E+R + EE GLT SAGV+ N+L+AK+ SD NKP+G V+
Sbjct: 114 DVTQ--NKPGIASATQVAQEIRRLIQEETGLTASAGVSYNKLIAKLASDQNKPDGLCVVR 171
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFF 186
A F++ +P+R+I GIG VT + + GI T ++ + S+A F+
Sbjct: 172 PTEGA--DFMARMPVRRIHGIGPVTAERMHKL-GIETGADLRDRDMPFLKTHFGSSALFY 228
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTF--SVTEDKALLYRKLAEIAEMLSADMQKEGLRG 244
G + + RKS+S E TF + ++ALL R++ IA+ L A ++K G
Sbjct: 229 YRAARGEDDRPVHERQGRKSVSVEDTFFEDLVAEEALL-REIERIAQSLWARIEKAQAYG 287
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSL--RLIGLRV 298
RT+ LK+K A F + TR+ + + S E ++ LLKA+LP+ + RL+GL +
Sbjct: 288 RTVVLKVKFADFRIITRSRSFAAPVRSVEQLVDAGRALLKAQLPLRMGARLLGLGI 343
>gi|374599088|ref|ZP_09672090.1| DNA polymerase IV [Myroides odoratus DSM 2801]
gi|423324227|ref|ZP_17302068.1| hypothetical protein HMPREF9716_01425 [Myroides odoratimimus CIP
103059]
gi|373910558|gb|EHQ42407.1| DNA polymerase IV [Myroides odoratus DSM 2801]
gi|404608618|gb|EKB08077.1| hypothetical protein HMPREF9716_01425 [Myroides odoratimimus CIP
103059]
Length = 357
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 122/304 (40%), Positives = 172/304 (56%), Gaps = 12/304 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++GVR+AM G +A+K CP LIFVP F +Y S R+VF +Y +LDEA+L
Sbjct: 48 ARQYGVRSAMSGILAKKKCPHLIFVPPRFDRYKEISRQIRQVFHEYTDLVEPLALDEAFL 107
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+TE + S IA+E+R ++E LT SAG++ N+ LAKV SD NKPNGQ +
Sbjct: 108 DVTE-NKIGCPSATLIAQEIRQKIFERTQLTASAGISINKFLAKVASDYNKPNGQKTINP 166
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFF 186
+ V F+ +L I+K GIGK T + FGI T ++ K L F + ++
Sbjct: 167 EE--VEAFLEALEIKKFFGIGKKTADRMYH-FGIFTGRDLKAKSIDFLEEHFGKAGKAYY 223
Query: 187 LSVGLGLGSTNTPQA--RFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLR 243
V G N+P + R KS+ +ERTF + L KLA I E LS ++K+GL
Sbjct: 224 YIV---RGIHNSPVSPDRLTKSVGTERTFDENLSSEVYLENKLAHIVEELSLRLRKQGLA 280
Query: 244 GRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFN 302
G+T+TLK+K A F +TR+ T +I+ + IL A LL E L S+RLIG+ ++ N
Sbjct: 281 GKTVTLKIKYADFVQQTRSTTFPYFIADAGIILDCAKELLYQEKLQNSVRLIGVSLSNLN 340
Query: 303 EDKV 306
KV
Sbjct: 341 NIKV 344
>gi|381199359|ref|ZP_09906509.1| DNA polymerase IV [Sphingobium yanoikuyae XLDN2-5]
Length = 365
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 115/296 (38%), Positives = 172/296 (58%), Gaps = 11/296 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR+AMPG AR+LCPEL+FV F Y S R +F ++ SLDEAYL
Sbjct: 54 ARKFGVRSAMPGARARRLCPELLFVKPRFEVYRSVSAQIRVIFARFTDMIQPLSLDEAYL 113
Query: 68 DITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP 126
D+T+ + GI S ++A+E+R + EE GLT SAGV+ N+L+AK+ SD NKP+G V+
Sbjct: 114 DVTQ--NKPGIASATQVAQEIRRLIQEETGLTASAGVSYNKLIAKLASDQNKPDGLCVVR 171
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFF 186
A F++ +P+R+I GIG VT + + GI T ++ + S+A F+
Sbjct: 172 PAEGA--DFMARMPVRRIHGIGPVTAERMHKL-GIETGADLRDRDLPFLQTHFGSSALFY 228
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTF--SVTEDKALLYRKLAEIAEMLSADMQKEGLRG 244
G + + RKS+S E TF + ++ALL R++ IA+ L A ++K G
Sbjct: 229 YRAARGEDDRPVHERQERKSVSVEDTFFEDLVAEEALL-REIERIAQSLWARIEKAQAYG 287
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSL--RLIGLRV 298
RT+ LK+K A F + TR+ + + S E +++ LLKA+LP+ + RL+GL V
Sbjct: 288 RTVVLKVKFADFRIITRSRSFAAPVRSVEQLVEAGRALLKAQLPLRMGARLLGLGV 343
>gi|407420127|gb|EKF38477.1| DNA polymerase kappa, putative,DNA polymerase IV, putative
[Trypanosoma cruzi marinkellei]
Length = 609
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 117/351 (33%), Positives = 178/351 (50%), Gaps = 23/351 (6%)
Query: 3 FELLS-----ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNF 57
F++LS ARR+GVR+ MPG+I KLCP L+ VPTDF Y + + R + YDPNF
Sbjct: 190 FDMLSTTNYVARRYGVRSGMPGYIGVKLCPSLVIVPTDFDAYHAEAAVVRGIAAAYDPNF 249
Query: 58 MAASLDEAYLDITEVCRER-GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDI 116
+ LDE +++T ++ G++ ++A E R V+ E LT SAG+ P LAK+ S+
Sbjct: 250 TSVGLDELTMEVTAYLQQHPGMTAGDVASEFRARVFAETQLTASAGIGPTATLAKIASNY 309
Query: 117 NKPNGQFVLP-NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLC 175
KPNGQ L R VM F+ +LP+R + GIG+ TE IL + GIN E+ + LC
Sbjct: 310 EKPNGQHELRLRTRQDVMEFMKNLPVRTVPGIGRSTESILHGL-GINLLGEIYDRRVELC 368
Query: 176 AVFSHSTADFFLSVGLGL----------GSTNTPQARFRKSISSERTFSVTEDKALLYRK 225
+ + T F L +G+ GS T +A RK+I ERTF + L +
Sbjct: 369 YILTEKTFCFLLGSSMGVVRWMDTDTSDGSERTSEAE-RKTIGMERTFRNLSSRLELQQI 427
Query: 226 LAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK- 284
+ +++ L R + LK K ASF+V + L ++ E + + LL
Sbjct: 428 AHSALQTAHRRLEENELFCRQIVLKTKRASFQVHQYSKNLPQHSDDLETLRRGVDELLLR 487
Query: 285 -AELPVSLRLIGLRVTQF--NEDKVRAPSDPTQKTLTNFMTSGHASKKIVG 332
A+ LRL+G+R+ + Q+TL + + ++S + VG
Sbjct: 488 IADQYAFLRLVGVRLADIITKSEYEALQRGGLQRTLLQYCSRSNSSYRAVG 538
>gi|399030722|ref|ZP_10731053.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Flavobacterium sp. CF136]
gi|398071121|gb|EJL62391.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Flavobacterium sp. CF136]
Length = 360
Score = 176 bits (445), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 106/303 (34%), Positives = 173/303 (57%), Gaps = 6/303 (1%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR+A+ G +A+K CPE+IFV F +Y S ++F +Y SLDEAYL
Sbjct: 53 ARKFGVRSAISGVLAKKYCPEIIFVRPRFDRYKEISTKIHEIFHEYTDMVEPLSLDEAYL 112
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T+ ++ S +A+E+R ++ E G+T SAG++ N+ +AK+ SD NKPNGQ +
Sbjct: 113 DVTQ-NKKGNPSASLLAQEIRLRIFNEVGITASAGISVNKFVAKIASDYNKPNGQKTVNP 171
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
D V+ F+ LPIRK G+GKVT + + GI T ++ K + F+
Sbjct: 172 DE--VIPFLEELPIRKFYGVGKVTTEKMYQL-GIFTGLDLKSKSVEFLEKHFGKSGGFYF 228
Query: 188 SVGLGLGSTNTPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLRGRT 246
+V G+ ++ +R KS+++E TF V + + +L +IA L ++K + G+T
Sbjct: 229 NVVRGIHNSEVKASRITKSVAAEHTFDVNLSSEIFMLEQLEKIAVSLEKRLKKYNILGKT 288
Query: 247 LTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFNEDK 305
+TLK+K + F +TR+ TL +I+ IL+ LL E + S+RL+G+ + N ++
Sbjct: 289 VTLKIKYSDFTQQTRSKTLPYFIADKSLILETVEELLYQERMKDSVRLLGISLNNLNTEQ 348
Query: 306 VRA 308
+A
Sbjct: 349 KKA 351
>gi|407842323|gb|EKG01063.1| DNA polymerase kappa, putative,DNA polymerase IV, putative
[Trypanosoma cruzi]
Length = 366
Score = 175 bits (444), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 108/303 (35%), Positives = 166/303 (54%), Gaps = 9/303 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARR+GVR+ MPG+I KLCP L+ VPTDF Y + + R + YDPNF + LDE +
Sbjct: 9 ARRYGVRSGMPGYIGVKLCPSLVIVPTDFDAYHAEATVVRGIAAAYDPNFTSVGLDELTM 68
Query: 68 DITEVCRER-GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP 126
++T ++ G++ ++A E R V+ E LT SAG+ P LAK+ S+ KPNGQ L
Sbjct: 69 EVTAYLQQHPGMTAGDVASEFRARVFAETQLTASAGIGPTATLAKIASNYEKPNGQHELR 128
Query: 127 -NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADF 185
R VM F+ LP+R + GIG V + +LR V GI TC +L+K LLC +F T F
Sbjct: 129 LRTRQDVMEFMKDLPVRTVPGIGPVRDAVLR-VLGIRTCGCVLRKKGLLCFLFPEKTFRF 187
Query: 186 FLSVGLGLGSTNTPQAR---FRKSISSERTFS-VTEDKALLYRKLAEIAEMLSADMQKEG 241
+LS GLG+ +N R +K++ E TF + +A L + + E+ + +
Sbjct: 188 YLSAGLGVVRSNADLMRSDGTQKTMGHEITFKRRLKSEAELRQIVLEVLVAVHNTLLLRR 247
Query: 242 LRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVT 299
+ + +TL +K +FE ++TL + + +L+ LL+ L RL+G+R+
Sbjct: 248 VAAQRVTLLMKRRTFENHQFSLTLGEATNDFAALLEATRKLLQPHLASFDKFRLVGVRLG 307
Query: 300 QFN 302
+
Sbjct: 308 KLQ 310
>gi|327404453|ref|YP_004345291.1| DNA polymerase IV [Fluviicola taffensis DSM 16823]
gi|327319961|gb|AEA44453.1| DNA polymerase IV [Fluviicola taffensis DSM 16823]
Length = 370
Score = 175 bits (444), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 112/309 (36%), Positives = 178/309 (57%), Gaps = 12/309 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGV++AMP +A +LCPELIFV F +Y S R +F +Y SLDEA+L
Sbjct: 62 ARKFGVKSAMPSSMAARLCPELIFVRPRFDRYQEISHQIRAIFYEYTDLVEPLSLDEAFL 121
Query: 68 DITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VL 125
D+T ++GI S +A+E+R +Y+E GL SAG++ N+ AKV SD+NKPNGQ V+
Sbjct: 122 DVT--TNKKGIQSATLLAKEIRERIYQEVGLRASAGISINKFTAKVASDVNKPNGQLTVI 179
Query: 126 PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTAD 184
P + V TF+ LPI + GIGKVT ++++ G+ T +++ QK L F
Sbjct: 180 PEE---VETFLEKLPIDRFFGIGKVTATKMKEL-GVRTGKDLKQKSIDFLNQHFGKQGLH 235
Query: 185 FFLSVGLGLGSTNTPQARFRKSISSERT-FSVTEDKALLYRKLAEIAEMLSADMQKEGLR 243
F+ ++ G+ + R RKS + E T FS K + L +IA L M+K+ +
Sbjct: 236 FY-NIVRGIQYSKVKPNRIRKSFAVEHTYFSEIYSKRKILENLEQIALDLERRMKKKSVS 294
Query: 244 GRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK-AELPVSLRLIGLRVTQFN 302
G+ +++K+K A F +TRA T+ +Y+S+ E+ +L++ E+ +RL+G+ ++ N
Sbjct: 295 GKCVSIKIKYADFTQQTRAKTVLEYMSTKEEFFPLIELLVEHLEINKPVRLLGISFSKLN 354
Query: 303 EDKVRAPSD 311
++ D
Sbjct: 355 TEETELDQD 363
>gi|329114949|ref|ZP_08243704.1| DNA polymerase IV [Acetobacter pomorum DM001]
gi|326695392|gb|EGE47078.1| DNA polymerase IV [Acetobacter pomorum DM001]
Length = 360
Score = 174 bits (442), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 117/299 (39%), Positives = 165/299 (55%), Gaps = 15/299 (5%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR+AMP A++ CP LIFVP F Y S +F +Y P SLDEAYL
Sbjct: 52 ARKFGVRSAMPSVQAQRKCPHLIFVPPRFDVYRAVSAQIHAIFARYTPLIQPLSLDEAYL 111
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T R S IAEE+R ++ E GLT SAGV+ N+ LAK+ SD KPNGQFV+P
Sbjct: 112 DVTNPLLLRP-SATAIAEEIRAAILHETGLTASAGVSYNKFLAKLASDYRKPNGQFVIPP 170
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL--LCAVFSHSTADF 185
+R F+++LP+ G+G T + GI+T + L++ SL L F + A +
Sbjct: 171 NRGE--AFVANLPVNAFHGVGPATAQRMH-TLGIHTGAD-LRRFSLDILRQHFGKAAAFY 226
Query: 186 FLSVGLGLGSTNTP--QARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGL 242
+ G+ G + P R RKS+ E TF+ A L+ L E+A + A QK L
Sbjct: 227 Y---GIARGKDDRPVEPNRPRKSLGKEITFAQDLRTSAELHAALHELAAKVWAGCQKRNL 283
Query: 243 RGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVT 299
GRT+TLKL+ F TR+++L + E + + A LL LPV +RL+G+ ++
Sbjct: 284 TGRTITLKLRYTDFNQCTRSLSLADPVQDQEILAEMACRLLAPLLPVRAPVRLLGITLS 342
>gi|384097234|ref|ZP_09998355.1| DNA polymerase IV [Imtechella halotolerans K1]
gi|383837202|gb|EID76602.1| DNA polymerase IV [Imtechella halotolerans K1]
Length = 366
Score = 174 bits (442), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 111/298 (37%), Positives = 170/298 (57%), Gaps = 8/298 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++GV++AM +IA+K CPELIFV F +Y S+ +K+F Y SLDEAYL
Sbjct: 53 ARKYGVKSAMSSYIAKKKCPELIFVKPRFDRYKEISESIQKIFYDYTDLVEPLSLDEAYL 112
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQ-FVLP 126
D+T ++ S EIA+E+R +Y GLT SAG++ N+ +AK+ SD NKPNGQ V P
Sbjct: 113 DVT-YNKKGNPSASEIAKEIRNRIYLNTGLTASAGISINKFIAKIASDYNKPNGQKTVKP 171
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFF 186
+ V +F+ +L IRK GIGKVT + + GI T +++ K ++ +
Sbjct: 172 KE---VESFLEALDIRKFYGIGKVTTEKMY-LLGIFTGKDLKTKSREFLEYHFGNSGSHY 227
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTF-SVTEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
+ G ++ R KS+ +E TF + L +L I++ L ++K L G+
Sbjct: 228 YQIVRGFHNSPVKPERIPKSVGAEHTFLENLSSEVFLKERLDNISQELETRLKKNKLAGK 287
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFN 302
T+TLK+K + F ++TR+ TL +IS IL+ A+ LL E L S+RL+G+ ++ N
Sbjct: 288 TITLKIKYSDFTLQTRSKTLPYFISDKSLILEIATELLYQEKLFNSVRLVGISLSNLN 345
>gi|399926725|ref|ZP_10784083.1| DNA polymerase IV, damage-inducible protein DinB [Myroides
injenensis M09-0166]
Length = 347
Score = 174 bits (442), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 117/305 (38%), Positives = 170/305 (55%), Gaps = 8/305 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FGVR+A+ G +A+K CP LIFV F +Y S RK+F +Y SLDEA+L
Sbjct: 39 AREFGVRSAISGVLAKKRCPHLIFVKPRFDRYKEISREIRKIFHEYTDLVEPLSLDEAFL 98
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T+ + S IA E+R +YE LT SAG++ N+ LAK+ SD NKPNGQ +
Sbjct: 99 DVTK-NKINCPSATLIAYEIRKKIYERLQLTASAGISINKFLAKIASDYNKPNGQKTINP 157
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFF 186
D V+ F+ +L I+K GIGK T + FGI T +++ +K L F + D++
Sbjct: 158 DE--VIEFLENLEIKKFFGIGKKTAEKMYH-FGIFTGKDLKEKSLDFLVTHFGKAGTDYY 214
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLRGR 245
++ G+ + R KS+ +ERTF + L +L I E L ++K+ + G+
Sbjct: 215 -NIVRGVHESPVQPNRKIKSVGTERTFDENLSSEVFLMERLDLIVEELGLRLKKQNVAGK 273
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFNED 304
T+TLKLK + F +TR+ T+ YIS E IL LL E L S+RLIG+ V+ N +
Sbjct: 274 TITLKLKYSDFSQQTRSATVPYYISDRELILDKVKELLYQEKLKDSVRLIGVAVSNLNTE 333
Query: 305 KVRAP 309
+ P
Sbjct: 334 ASKKP 338
>gi|365961688|ref|YP_004943255.1| DNA polymerase IV, damage-inducible protein DinB [Flavobacterium
columnare ATCC 49512]
gi|365738369|gb|AEW87462.1| DNA polymerase IV, damage-inducible protein DinB [Flavobacterium
columnare ATCC 49512]
Length = 358
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 116/303 (38%), Positives = 175/303 (57%), Gaps = 14/303 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR+AM G A++LCPELIFV F +Y S RK+F +Y SLDEAYL
Sbjct: 51 ARKFGVRSAMTGIQAKRLCPELIFVKPRFERYREISLKIRKIFYEYTDLVEPLSLDEAYL 110
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-P 126
D+T+ ++ S IA E+R + +E GLT SAG++ N+ +AK+ SD NKPNGQ + P
Sbjct: 111 DVTQ-NKKNNPSATLIASEIRQRIVDEVGLTASAGISINKFVAKIASDYNKPNGQKTIHP 169
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADF 185
+D V F+ SL I+K GIGKVT + + GI T +++ K L F S +
Sbjct: 170 DD---VTLFLESLDIKKFYGIGKVTTEKMYQL-GIYTGQDLKSKTIEYLEEHFGKSGTHY 225
Query: 186 FLSVGLGLGSTNTPQA--RFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGL 242
+ L G +N+P R KS+++E TF + + KL IA+ L+ +QK L
Sbjct: 226 Y---HLVRGISNSPVKPNRASKSVAAEHTFYTNLTSEIFMEEKLERIADELAKRLQKHKL 282
Query: 243 RGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQF 301
G+T+TLK+K + F +TR+ TL +++ +L+ A LL + + S+RL+G+ ++
Sbjct: 283 SGKTVTLKIKYSDFSQQTRSKTLPYFVADRNVLLEVAKELLYQDRMKDSVRLLGISLSNL 342
Query: 302 NED 304
N +
Sbjct: 343 NTE 345
>gi|119383484|ref|YP_914540.1| DNA-directed DNA polymerase [Paracoccus denitrificans PD1222]
gi|119373251|gb|ABL68844.1| DNA-directed DNA polymerase [Paracoccus denitrificans PD1222]
Length = 363
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 114/306 (37%), Positives = 166/306 (54%), Gaps = 10/306 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARR+GVR+AMP A +LCP+LIFV F Y S R +F +Y P SLDEAYL
Sbjct: 54 ARRYGVRSAMPSMRAMRLCPDLIFVKPRFDVYRAVSQQVRAIFAEYTPLVEPLSLDEAYL 113
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T+ G + IA+E+R + E GLT SAGV+ N+ LAK+ SD KP+G FV+P
Sbjct: 114 DLTDHL--NGSTATRIAKEIRARIREATGLTASAGVSYNKFLAKLASDQRKPDGLFVIPP 171
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFF 186
+ A F+ LPI + GIG T + + GI T ++ ++ L A F S A ++
Sbjct: 172 E--AGAEFVQGLPIGRFHGIGPATAARM-EAHGILTGADLARQSLDFLTARFGKSGA-YY 227
Query: 187 LSVGLGLGSTNTPQARFRKSISSERT-FSVTEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
++ G+ + R RKSI +E T F D A + LA +A+ + LRGR
Sbjct: 228 WNISRGIDTREVKPDRIRKSIGAENTYFEDLRDIAAAHEALAVLADKVWRHTTTAALRGR 287
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL--PVSLRLIGLRVTQFNE 303
T+TLK+K F TRA +L + + S +++L+ A LL P +RL+G+ ++ E
Sbjct: 288 TVTLKVKYGDFRQITRARSLPRAVESRDEMLEMACELLAPVFADPHGVRLLGITLSGLEE 347
Query: 304 DKVRAP 309
+ P
Sbjct: 348 ARQDEP 353
>gi|423132540|ref|ZP_17120190.1| hypothetical protein HMPREF9714_03590 [Myroides odoratimimus CCUG
12901]
gi|371639611|gb|EHO05227.1| hypothetical protein HMPREF9714_03590 [Myroides odoratimimus CCUG
12901]
Length = 356
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 113/304 (37%), Positives = 167/304 (54%), Gaps = 6/304 (1%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++GVR+AM +A+K CP LIFV F +Y S + R VF +Y +LDEA+L
Sbjct: 48 ARKYGVRSAMSAMMAKKNCPHLIFVKPRFERYKEVSRIIRSVFYEYTDLVEPLALDEAFL 107
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+TE + S IA E+R + E GLT S G++ N+ LAK+ SD NKPNGQ +
Sbjct: 108 DVTE-NKIGCPSATLIAHEIRMKILERTGLTASVGISINKFLAKIASDYNKPNGQKTIEP 166
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
D V+ F+ L I+K GIGK T + + GI T +++ K +
Sbjct: 167 DE--VINFLEELEIKKFFGIGKKTADRMYHL-GIFTGKDLKAKSVEFLTEHFGKAGQIYY 223
Query: 188 SVGLGLGSTNTPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLRGRT 246
+ GL ++ R KS+ +ERTF + + KL + E LS ++K+GL G+T
Sbjct: 224 DIVRGLSNSPVRPNRTIKSVGTERTFDENLSSEVFIETKLDILVEELSLRLKKQGLGGKT 283
Query: 247 LTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFNEDK 305
+TLK+K + F +TR+ T+ ++S E IL A VLL E L S+RLIG+ ++ N D+
Sbjct: 284 ITLKIKYSDFVQQTRSTTVPYFVSDKEIILDLAKVLLYQEKLKDSVRLIGVSLSNLNTDE 343
Query: 306 VRAP 309
+ P
Sbjct: 344 KKKP 347
>gi|363582785|ref|ZP_09315595.1| DNA polymerase IV 2 [Flavobacteriaceae bacterium HQM9]
Length = 365
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 110/279 (39%), Positives = 162/279 (58%), Gaps = 9/279 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR+AM +A+KLCPELIFV F +Y S R +F +Y SLDEAYL
Sbjct: 52 ARKFGVRSAMSSVVAKKLCPELIFVRHHFERYKEVSQQVRAIFFEYTDLVEPLSLDEAYL 111
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQ-FVLP 126
D+T V ++ S IAEE+R + ++ GLT SAG++ N+ +AKV SD NKPNGQ V P
Sbjct: 112 DVT-VNKKGNPSATLIAEEIREKILQKTGLTASAGISINKFIAKVASDYNKPNGQKTVHP 170
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADF 185
+ V+ F+ +L I+K G+GKVT+ + GI T ++ K + L F S A +
Sbjct: 171 TE---VLDFLEALDIKKFYGVGKVTQKKMY-ALGIYTGADLKTKTEAYLTENFGKSGAHY 226
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLRG 244
+ V G+ + R RKSI +ERTF+ + + +L E++E L+ + K + G
Sbjct: 227 YRIV-RGIHHSAVKPHRTRKSIGAERTFNENLASEIFMEERLKELSEELARRLTKSDVAG 285
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL 283
+T+TLK+K + F V TR+ T+ YI + + + A LL
Sbjct: 286 KTITLKIKYSDFSVHTRSKTIAYYICDANLLFEVAKELL 324
>gi|319952817|ref|YP_004164084.1| DNA polymerase iv [Cellulophaga algicola DSM 14237]
gi|319421477|gb|ADV48586.1| DNA polymerase IV [Cellulophaga algicola DSM 14237]
Length = 366
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 110/298 (36%), Positives = 169/298 (56%), Gaps = 8/298 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++GVR+AM +A++ CP++ FV F +Y S RK+F Y SLDEAYL
Sbjct: 53 ARKYGVRSAMSSVMAKRNCPQITFVQPRFERYKEISQKIRKIFYDYTDLVEPLSLDEAYL 112
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQ-FVLP 126
D+T V ++ S IA+E+R +++E GL SAG++ N+ +AKV SD NKPNGQ V P
Sbjct: 113 DVT-VNKKGNPSASLIAKEIRQRIFDELGLVASAGISINKFIAKVASDYNKPNGQKTVNP 171
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFF 186
+ V+ F+ L IRK G+GKVT + + GI T ++ QK + + ++
Sbjct: 172 EE---VIEFLEKLEIRKFYGVGKVTTEKMYKL-GIFTGFDLKQKSEIFLTENFGKSGGYY 227
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLRGR 245
V G+ ++ R KS+ +ERTFS + + +L IA L ++K + G+
Sbjct: 228 YHVVRGVHNSAVKPHRIPKSVGAERTFSENLSSEIFMLERLEHIATELERRLKKSTISGK 287
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFN 302
T+TLK+K + F ++TR+ TL+ YI+ IL+ A LL E L S+RL+G+ + N
Sbjct: 288 TITLKIKYSDFTLQTRSKTLRYYIADKHLILETAKELLYQEKLENSVRLLGISLANLN 345
>gi|407420129|gb|EKF38479.1| DNA polymerase kappa, putative,DNA polymerase IV, putative
[Trypanosoma cruzi marinkellei]
Length = 513
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 115/320 (35%), Positives = 169/320 (52%), Gaps = 28/320 (8%)
Query: 3 FELLS-----ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNF 57
F++LS ARR+GVR+ MPG+I KLCP L+ VPTDF Y + + R + YDPNF
Sbjct: 146 FDMLSTTNYVARRYGVRSGMPGYIGVKLCPSLVIVPTDFDAYHAEAAVVRGIAAAYDPNF 205
Query: 58 MAASLDEAYLDITEVCRER-GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDI 116
+ LDE +++T ++ G++ ++A E R V+ E LT SAG+ P LAK+ S+
Sbjct: 206 TSVGLDELTMEVTAYLQQHPGMTAGDVASEFRARVFAETQLTASAGIGPTATLAKIASNY 265
Query: 117 NKPNGQFVLP-NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLC 175
KPNGQ L R VM F+ +LP+R + GIG V E LR + GI TC +L+K LL
Sbjct: 266 EKPNGQHELRLRTRQDVMEFMKNLPVRTVPGIGPVQEAALR-ILGIRTCGCLLRKKVLLF 324
Query: 176 AVFSHSTADFFLSVGLGLGSTN---TPQARFRKSISSERTF-----SVTEDKALLYRKLA 227
+F T F+LS GLG+ N T R +K++ E TF S E K ++ + L
Sbjct: 325 FLFPEKTFRFYLSAGLGVVRNNADRTRSDRTQKTMGHEITFKRRLKSEAELKQIVLKVLV 384
Query: 228 EIAEML---SADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK 284
+ L A Q+ +TL +K +FE +TL + + + K LL+
Sbjct: 385 AVHTTLLLRRAAAQR-------VTLHMKRRTFENHQFTLTLGEATNDFAALRKATWKLLQ 437
Query: 285 AELPV--SLRLIGLRVTQFN 302
L + RL+G+R+ +
Sbjct: 438 PHLASFDNFRLVGVRLGKLQ 457
>gi|373111204|ref|ZP_09525464.1| hypothetical protein HMPREF9712_03057 [Myroides odoratimimus CCUG
10230]
gi|423135773|ref|ZP_17123418.1| hypothetical protein HMPREF9715_03193 [Myroides odoratimimus CIP
101113]
gi|423329499|ref|ZP_17307305.1| hypothetical protein HMPREF9711_02879 [Myroides odoratimimus CCUG
3837]
gi|371640315|gb|EHO05919.1| hypothetical protein HMPREF9715_03193 [Myroides odoratimimus CIP
101113]
gi|371641265|gb|EHO06852.1| hypothetical protein HMPREF9712_03057 [Myroides odoratimimus CCUG
10230]
gi|404603127|gb|EKB02802.1| hypothetical protein HMPREF9711_02879 [Myroides odoratimimus CCUG
3837]
Length = 356
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 113/304 (37%), Positives = 167/304 (54%), Gaps = 6/304 (1%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++GVR+AM +A+K CP LIFV F +Y S + R VF +Y +LDEA+L
Sbjct: 48 ARKYGVRSAMSAMMAKKNCPHLIFVKPRFERYKEVSRIIRSVFYEYTDLVEPLALDEAFL 107
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+TE + S IA E+R + E GLT SAG++ N+ LAK+ SD NKPNGQ +
Sbjct: 108 DVTE-NKIGCPSATLIAHEIRMKILERTGLTASAGISINKFLAKIASDYNKPNGQKTIEP 166
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
D V+ F+ L I+K GIGK T + + GI T +++ K +
Sbjct: 167 DE--VINFLEELEIKKFFGIGKKTADRMYHL-GIFTGKDLKAKSVEFLTEHFGKAGQIYY 223
Query: 188 SVGLGLGSTNTPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLRGRT 246
+ GL ++ R KS+ +ERTF + + KL + E LS ++K+ L G+T
Sbjct: 224 DIVRGLSNSPVRPNRTIKSVGTERTFDENLSSEVFIETKLDMLVEELSLRLKKQSLGGKT 283
Query: 247 LTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFNEDK 305
+TLK+K + F +TR+ T+ ++S E IL A VLL E L S+RLIG+ ++ N D+
Sbjct: 284 ITLKIKYSDFVQQTRSTTVPYFVSDKEIILDLAKVLLYQEKLKDSVRLIGVSLSNLNTDE 343
Query: 306 VRAP 309
+ P
Sbjct: 344 KKKP 347
>gi|393723669|ref|ZP_10343596.1| DNA polymerase IV [Sphingomonas sp. PAMC 26605]
Length = 364
Score = 173 bits (438), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 110/299 (36%), Positives = 158/299 (52%), Gaps = 7/299 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FGVR+AMP A + CP+L+FVP F Y S R +F Y SLDEAYL
Sbjct: 58 ARVFGVRSAMPSVTALRRCPDLVFVPPRFDVYGAISQQIRAIFADYTDQIEPLSLDEAYL 117
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+TE G S IAE++R + E LT SAGV+ N+ +AK+ SD NKP+G V+P
Sbjct: 118 DVTEDRHGLG-SAKAIAEQIRARIKAETRLTASAGVSYNKFIAKLASDQNKPDGICVIPP 176
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
R + F++SLP+++ G+G VT + GI T ++ + S AD+
Sbjct: 177 ARGS--AFVASLPVKRFHGVGPVTATRM-AALGIETGADLRDRPLAFLHAHFGSYADYLY 233
Query: 188 SVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRT 246
G+ R KS+ +ERTF A L+ L +AE +++ G+RGRT
Sbjct: 234 GAARGIDHRPVRSNRATKSVGAERTFETDIASPADLHAALDRVAEAALVRIERHGVRGRT 293
Query: 247 LTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSL--RLIGLRVTQFNE 303
+TLKL+ + F TRA +L + E + LL A+LPV L RL+GL ++ ++
Sbjct: 294 MTLKLRFSDFRTITRARSLSRGAFDRESFVTGGRELLDAQLPVPLGVRLLGLTLSGIHD 352
>gi|299117623|emb|CBN75465.1| hypothetical protein Esi_0099_0091 [Ectocarpus siliculosus]
Length = 713
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 104/278 (37%), Positives = 154/278 (55%), Gaps = 22/278 (7%)
Query: 83 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIR 142
+AEE+R + E LT S G+ PN +LAK+ SD NKP+GQ + DR V+ F+ LP+R
Sbjct: 283 LAEEIRGRIREATKLTASVGIGPNFMLAKIASDWNKPDGQMCIGGDRAEVLRFLHDLPVR 342
Query: 143 KIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTN----T 198
KIGG+GKV E LR+ G+ TC ++ ++ + V + T+ + + LG+ S + T
Sbjct: 343 KIGGVGKVQEKCLREALGVVTCGDLFRERGSVIHVMTPHTSRWLIKASLGIASADHDVAT 402
Query: 199 PQARF-----RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 253
QA+ RK IS ERTF L K EI + L+A+M +GL +T+ LK+KT
Sbjct: 403 EQAQAVGAVTRKQISKERTFGELSAPRDLLNKCREICDSLAAEMATKGLEAKTVGLKVKT 462
Query: 254 ASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL-----------PVSLRLIGLRVTQFN 302
F+VRT+ T Y+SS++D+ AS LL+ E+ + LRL+G+R + F
Sbjct: 463 TKFQVRTQDSTGNAYVSSADDLFSAASALLQREIQGAAAASAPGGKLRLRLMGVRASGFR 522
Query: 303 EDKVRAPSDPTQKTLTNFMTSGHASKKIVGDQNSLGSD 340
+ AP P Q TL F++S A G+ S G+D
Sbjct: 523 -GQAGAPILPGQATLDGFLSSKAAEGGCQGEDES-GND 558
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 43/74 (58%), Positives = 55/74 (74%), Gaps = 1/74 (1%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR GVR+AMPGFI RKLCPEL+FV D+ KYT ++ R++F +YDP A SLDEAYL
Sbjct: 126 ARLKGVRSAMPGFIGRKLCPELVFVKPDYEKYTVVAEQIREIFREYDPRMRAYSLDEAYL 185
Query: 68 DITEVCRER-GISG 80
++T+V ER G+ G
Sbjct: 186 NVTKVLTERLGLDG 199
>gi|71415110|ref|XP_809633.1| DNA polymerase kappa [Trypanosoma cruzi strain CL Brener]
gi|70874045|gb|EAN87782.1| DNA polymerase kappa, putative [Trypanosoma cruzi]
Length = 604
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 111/316 (35%), Positives = 162/316 (51%), Gaps = 21/316 (6%)
Query: 3 FELLS-----ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNF 57
F++LS ARR+GVR+ MPG+I KLCP L+ VPTD Y + + R + YDPNF
Sbjct: 189 FDMLSTTNYVARRYGVRSGMPGYIGVKLCPSLVIVPTDLDAYHAEAAVVRGIAAAYDPNF 248
Query: 58 MAASLDEAYLDITEVCRER-GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDI 116
+ LDE +++T ++ G++ ++A E R V+ E LT SAG+ P LAK+ S+
Sbjct: 249 TSVGLDELTMEVTAYLQQHPGMTAGDVASEFRARVFAETQLTASAGIGPTATLAKIASNY 308
Query: 117 NKPNGQFVLP-NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLC 175
KPNGQ L R VM F+ LP+R + GIG+ TE IL GIN E+ + LC
Sbjct: 309 EKPNGQHELRLRTRQDVMEFMKDLPVRTVPGIGRSTESILHG-LGINLLGEIYDRRVELC 367
Query: 176 AVFSHSTADFFLSVGLGL----------GSTNTPQARFRKSISSERTFSVTEDKALLYRK 225
+ + T F L +G+ GS T +A RKSI ERTF + L +
Sbjct: 368 YILTEKTFCFLLGSSMGVVRWMDADTNDGSERTTEAE-RKSIGMERTFRNLSSRLELQQI 426
Query: 226 LAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK- 284
+ +++ L R + LK K ASF+V + L ++ E + + LL
Sbjct: 427 AHSALQTAHRRLEENELFCRQIVLKTKRASFQVHQYSKNLPQHSDDLETLRRGVDELLLR 486
Query: 285 -AELPVSLRLIGLRVT 299
A+ LRL+G+R+
Sbjct: 487 IADQYAFLRLVGVRLA 502
>gi|340386730|ref|XP_003391861.1| PREDICTED: DNA polymerase kappa-like, partial [Amphimedon
queenslandica]
Length = 427
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 93/229 (40%), Positives = 146/229 (63%), Gaps = 11/229 (4%)
Query: 73 CRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAV 132
C ER + E+R ++ LT SAG+A N++LAK+ SD+NKPNGQ+++P R +
Sbjct: 206 CAER------VVNEIRERIHLTTQLTASAGIASNKMLAKIASDMNKPNGQYMIPPSREKI 259
Query: 133 MTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLG 192
+ FI LPIRK+ GIGKVTE +L + GI T ++ K LL +FS + D+F+++ LG
Sbjct: 260 LEFIRKLPIRKVSGIGKVTEKML-NALGIVTGADIYDKRGLLRLMFSKCSYDYFMNICLG 318
Query: 193 LGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLK 252
+GS RKSIS+ERTF + L++K ++ L+ ++++ ++G+T+TLKLK
Sbjct: 319 IGSCTVHSEWERKSISTERTFPDIWKPSELFQKCHKLCYSLTEEVEESNIKGKTVTLKLK 378
Query: 253 TASFEVRTRAVTLQKYISSSEDILKHASVLLKAELP----VSLRLIGLR 297
T++FEV+ R++T ISS DI K A +LL++E+ + LRL+G +
Sbjct: 379 TSAFEVKQRSMTFPNPISSFADIHKAARILLESEMKNNSQLKLRLMGTK 427
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 40/68 (58%), Positives = 49/68 (72%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARR+GVRAAMPGFIA+KLCP+L+ V + F+KY S R++ YDP F + LDEAYL
Sbjct: 31 ARRYGVRAAMPGFIAKKLCPQLVIVKSHFSKYQEVSQTVREILSNYDPLFSSVGLDEAYL 90
Query: 68 DITEVCRE 75
DITE E
Sbjct: 91 DITEYVTE 98
>gi|325266910|ref|ZP_08133581.1| DNA-directed DNA polymerase IV [Kingella denitrificans ATCC 33394]
gi|324981651|gb|EGC17292.1| DNA-directed DNA polymerase IV [Kingella denitrificans ATCC 33394]
Length = 355
Score = 172 bits (436), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 104/300 (34%), Positives = 162/300 (54%), Gaps = 7/300 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FG+R+AM A++LCP+ +FVP F Y S ++F +Y +LDEAYL
Sbjct: 49 ARAFGLRSAMSAARAKQLCPQAVFVPPHFDLYRQVSRQIHQIFHQYTDLVEPLALDEAYL 108
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D++ + ++A ++R ++++ GLT SAG+APN+ LAKV SD KPNGQFVLP
Sbjct: 109 DVSH-NKLSVPYATDVASQIRAQIFQQTGLTASAGIAPNKFLAKVASDWRKPNGQFVLPP 167
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
++A F+ LPI KI G+G+ T L FG T ++ + F
Sbjct: 168 PKIA--AFLHGLPIEKIPGVGQKTAQKLHR-FGWKTAGDVQAASRMQLVHLLGQWGYRFY 224
Query: 188 SVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTL 247
+ G+ + +R R IS+E T + + L ++A +S MQ++ RG+T+
Sbjct: 225 DLVRGVDNRPVQPSRERVQISTEITVPDDLPREEIALHLPDLAHDISLQMQRKRTRGQTV 284
Query: 248 TLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELP--VSLRLIGLRVTQFNEDK 305
TLKLKT+ F + TR+ T + +E +LK A LL+ ++P RLIG+ ++ D+
Sbjct: 285 TLKLKTSDFHIYTRSQTYSSPLPDAESLLKAACTLLQ-KMPGEPEYRLIGIGISHLQPDR 343
>gi|418056114|ref|ZP_12694168.1| DNA polymerase IV [Hyphomicrobium denitrificans 1NES1]
gi|353210392|gb|EHB75794.1| DNA polymerase IV [Hyphomicrobium denitrificans 1NES1]
Length = 360
Score = 172 bits (436), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 117/305 (38%), Positives = 173/305 (56%), Gaps = 17/305 (5%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FGVR+AMP A + CP L+FVP F Y S R +F +Y P SLDEAYL
Sbjct: 52 ARAFGVRSAMPSTKALRQCPSLVFVPPRFEIYRAVSQQIRAIFARYTPLIEPLSLDEAYL 111
Query: 68 DITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP 126
D+TE RG+ + + A E+R + E GLT SAGV+ N+ LAK+ SD+ KPNGQFV+P
Sbjct: 112 DVTENL--RGLPTASDTAAEIRARILAETGLTASAGVSYNKFLAKLASDVRKPNGQFVIP 169
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM-LQKGSLLCAVFSHSTADF 185
R A FI LP+++ G+G VT + + GI T ++ Q L F S A +
Sbjct: 170 PQRGA--EFIEGLPVKQFHGVGPVTAEKM-NALGIQTGADLRAQSLEFLQQHFGRSGA-W 225
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL---LYRKLAEIAEMLSADMQKEGL 242
+ ++ G R RKS SE TFS ED+ L + + E+A+ + A +K
Sbjct: 226 YYAIARGEDDRPVEPNRPRKSSGSETTFS--EDRLLPAEIEAGVLEMADDVWAWCEKNQS 283
Query: 243 RGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASV-LLKAELPVS--LRLIGLRVT 299
G T+T+K+K A F + TR+ T + + ++ D+L S+ L+++ PV+ +RL+G+ V+
Sbjct: 284 FGATVTVKIKFADFRIVTRSRTASRPV-TAHDLLHEISLALVRSIYPVTTGVRLVGVSVS 342
Query: 300 QFNED 304
+F+ D
Sbjct: 343 KFSSD 347
>gi|374596002|ref|ZP_09669006.1| DNA polymerase IV [Gillisia limnaea DSM 15749]
gi|373870641|gb|EHQ02639.1| DNA polymerase IV [Gillisia limnaea DSM 15749]
Length = 349
Score = 172 bits (436), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 108/299 (36%), Positives = 171/299 (57%), Gaps = 10/299 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++GV++AM IA++ CP+LIF+ F +Y S+ R +F +Y SLDEAYL
Sbjct: 39 ARKYGVKSAMSSVIAKRNCPDLIFIKPRFERYREISNQIRAIFLEYTDLVEPLSLDEAYL 98
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-P 126
D+TE ++ S IA E+R + + GL SAG++ N+ +AK+ SDINKPNGQ + P
Sbjct: 99 DVTE-NKKGNPSATLIAREIREKIKNKTGLNASAGISVNKFIAKIASDINKPNGQKTINP 157
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADF 185
D V+ F+ L +RK G+GKVT + + GI ++ QK L F S +
Sbjct: 158 ED---VLEFLEKLQVRKFHGVGKVTAEKMYQL-GIFNGFDLKQKSLEFLIENFGKSGLHY 213
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLRG 244
+ +V G+ + R RKS+ +ERTF + + +L IAE + +QK + G
Sbjct: 214 Y-NVVRGIHLSEVKPNRIRKSLGAERTFDTNISSEIFMLERLQNIAEEIERRLQKSKVAG 272
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHAS-VLLKAELPVSLRLIGLRVTQFN 302
+T+TLK+K + F TR+ TL +ISS + +L+ A +L + ++ S+RL+G+ ++ N
Sbjct: 273 KTVTLKIKYSDFTQHTRSKTLPYFISSKDLVLECAKELLFQEKMKESVRLLGISLSNLN 331
>gi|397573824|gb|EJK48893.1| hypothetical protein THAOC_32274, partial [Thalassiosira oceanica]
Length = 571
Score = 172 bits (436), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 127/374 (33%), Positives = 184/374 (49%), Gaps = 72/374 (19%)
Query: 8 ARRFGVRAAMPGFIARKLCPEL-------IFVPTDFTKYTYYSDLTRKVFCKYDPNFMAA 60
ARR+GVRAAMPGFI + L EL FV +DF Y S + + +YD
Sbjct: 168 ARRYGVRAAMPGFIGQVLVKELSGGSECLTFVKSDFKLYHSKSAEVKAILQEYDKTLKMC 227
Query: 61 SLDEAYLDI----------TEVCRERGI-------------------SGIEIAE------ 85
SLDEAY+DI TE R+ S +EI E
Sbjct: 228 SLDEAYMDIESYLDAYFSITEGDRDHAAITKRMSNSDDDRPPLQEMASILEIKEVTKNLL 287
Query: 86 -ELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQ-FVLPNDRMAVMTFISSLPIRK 143
+R V+ E GLTCSAG A N ++AK+ SD+NKPNGQ FV P++ + TF+S L +RK
Sbjct: 288 HSIRKRVHRETGLTCSAGTASNFMIAKIASDMNKPNGQVFVGPSEE-EIRTFLSPLSVRK 346
Query: 144 IGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGL---------- 193
+ G+G++ E LR G+ T ++ K + + +F +TA F L V +G
Sbjct: 347 VCGVGRILEKFLRATLGVVTVADLYAKRAEVNFLFKPATAQFLLRVSIGYSEDSRRESEG 406
Query: 194 GSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 253
G ++ RK +S ERTF T+ + L KL IA L+ D+Q +GL+ RT+ LK+K
Sbjct: 407 GERGDDESAQRKGMSGERTFQPTDTWSDLCVKLESIATRLAKDIQSKGLKPRTIGLKVKL 466
Query: 254 ASFEVRTRAVTLQKYI------SSSEDILKHASVLL-----------KAELPVSLRLIGL 296
A+F + TR T Q + S++ ++ A LL K + +RL+G+
Sbjct: 467 ANFNLLTRTNTRQVALFQQAGDGSTQTLVDIAVKLLRDVKRAFVEEHKDKAGFMVRLLGV 526
Query: 297 RVTQFNEDKVRAPS 310
R + F ++ PS
Sbjct: 527 RCSNFRLERETQPS 540
>gi|390169745|ref|ZP_10221678.1| DNA polymerase IV [Sphingobium indicum B90A]
gi|389587749|gb|EIM65811.1| DNA polymerase IV [Sphingobium indicum B90A]
Length = 359
Score = 172 bits (435), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 115/304 (37%), Positives = 173/304 (56%), Gaps = 13/304 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++GVR+AMPG AR+LCP+L+FV F Y S R++F ++ SLDEAYL
Sbjct: 51 ARKYGVRSAMPGARARRLCPDLLFVRPRFEVYRAVSAQVREIFSRFTDIIQPLSLDEAYL 110
Query: 68 DITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL- 125
D+T + GI S IAEE+R + EE GLT SAGV+ N+L+AK+ SD NKP+G V+
Sbjct: 111 DVTR--NKPGIPSATRIAEEIRRLIREETGLTASAGVSYNKLIAKLASDQNKPDGICVVR 168
Query: 126 PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADF 185
P + A FI+ +P+R+I G+G VT ++ GI T ++ + S A F
Sbjct: 169 PQEGAA---FIAKMPVRRIHGVGPVTAKRMQ-ALGIETGADLRARDLPFLQHHFGSAALF 224
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTF--SVTEDKALLYRKLAEIAEMLSADMQKEGLR 243
+ G + + RKS+S E TF +T + AL+ +L IAE L ++K G
Sbjct: 225 YYRASRGEDDRPVHERQERKSVSVEDTFFDDLTAEDALIV-ELDRIAENLWGRIEKSGAY 283
Query: 244 GRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSL--RLIGLRVTQF 301
GRT+ LK+K A F + TR+ + + S + + + LL+A+LP+ + RL+GL V
Sbjct: 284 GRTVVLKVKFADFRIITRSRSFAAPLRSPDLLAETGRALLRAQLPLRMGARLLGLGVHNL 343
Query: 302 NEDK 305
+ ++
Sbjct: 344 DHEE 347
>gi|424912575|ref|ZP_18335952.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Rhizobium leguminosarum bv. viciae USDA 2370]
gi|392848606|gb|EJB01129.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Rhizobium leguminosarum bv. viciae USDA 2370]
Length = 365
Score = 172 bits (435), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 108/302 (35%), Positives = 163/302 (53%), Gaps = 9/302 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FGVR+AMP A + CP+LIFV F Y S R++F +Y P SLDEAYL
Sbjct: 55 AREFGVRSAMPSVTAARKCPDLIFVKPRFEVYRAVSQQIREIFAEYTPLIEPLSLDEAYL 114
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-P 126
D+TE ++ I+ EIA E+R + GL SAG++ N+ LAK+ SD+NKPNGQ V+ P
Sbjct: 115 DVTENLKDMPIA-TEIALEIRARIKAVTGLNASAGISYNKFLAKMASDLNKPNGQAVITP 173
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFF 186
+ A F+ L ++K G+G T + + GI T ++ K + +F
Sbjct: 174 KNGPA---FVEQLAVKKFHGVGPATAEKMHRL-GIETGADLKAKSLPFLVEHFGKSGPYF 229
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
+ G+ R RKS+ +E TF+ +D L R+L +AE + + + +G G+
Sbjct: 230 YGIARGIDERQVRPDRVRKSVGAEDTFTADIDDLELATRELRPLAEKVWSYCEAKGFSGK 289
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFNE 303
T+T+K+K + F TR+ T S++EDIL A+ LL P +RL+G+ ++
Sbjct: 290 TVTVKIKYSDFTQATRSRTTAIPYSNAEDILDAANTLLAGVYPFKRPVRLLGVTLSSLTN 349
Query: 304 DK 305
DK
Sbjct: 350 DK 351
>gi|440749593|ref|ZP_20928839.1| DNA polymerase IV [Mariniradius saccharolyticus AK6]
gi|436481879|gb|ELP38025.1| DNA polymerase IV [Mariniradius saccharolyticus AK6]
Length = 369
Score = 172 bits (435), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 111/299 (37%), Positives = 169/299 (56%), Gaps = 11/299 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR+AMPG IA CP LIFV F +Y S R++F Y SLDEA+L
Sbjct: 53 ARKFGVRSAMPGKIAALRCPGLIFVRPRFERYKEISGQIRQIFLDYTDLVEPLSLDEAFL 112
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQ-FVLP 126
D+TE + S IA E+R + +E GL SAG++ N+ LAK SDINKPNGQ +LP
Sbjct: 113 DVTE-NKVNNPSATRIALEIRKRIKDELGLNASAGISYNKFLAKTASDINKPNGQAVILP 171
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADF 185
+ A F+ LPI + GIGKVT ++++ GI+ ++ Q L F S F
Sbjct: 172 KNAEA---FLEKLPIERFYGIGKVTAEKMKEL-GIHNGFDLKQYSVQYLTKKFGKSGLHF 227
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLR 243
+ ++ G+ + R RKS+S+E TFS ++ED+ + L I E + M++ G++
Sbjct: 228 Y-NIVRGIHLSEVKPNRIRKSLSAESTFSKDISEDEQIA-DALERIWEEVVRRMERSGVK 285
Query: 244 GRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQFN 302
GRT+TLK+K F + TR+ T++K++ + + + L ++RL+G+ ++ N
Sbjct: 286 GRTVTLKIKYHDFTIHTRSKTIEKFLEPARIKEIIWELWHQEPLVAAVRLLGIGISNLN 344
>gi|404448685|ref|ZP_11013677.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Indibacter alkaliphilus LW1]
gi|403765409|gb|EJZ26287.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Indibacter alkaliphilus LW1]
Length = 360
Score = 172 bits (435), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 116/305 (38%), Positives = 171/305 (56%), Gaps = 11/305 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++GVR+AM G +A CP LIFV F +Y S R++F Y SLDEA+L
Sbjct: 50 ARKYGVRSAMSGKMAALKCPHLIFVKPRFDRYKEISTRIREIFYAYTDLVEPLSLDEAFL 109
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQ-FVLP 126
D+TE + S IA+E+R + EE GL SAG++ N+ LAK SDINKPNGQ +LP
Sbjct: 110 DVTE-NKVGNPSATLIAKEIRARIKEEIGLNASAGISYNKFLAKTASDINKPNGQAVILP 168
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADF 185
D +F+ LPI K GIGKVT ++ + GI+ ++ Q L F S F
Sbjct: 169 QD---AESFLEKLPIEKFFGIGKVTSEKMKSL-GIHNGYDLKQFSLQFLTKRFGKSGLHF 224
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRG 244
+ ++ G+ + R RKS+S+E TFS + + L+EI E L ++K G++G
Sbjct: 225 Y-NIVRGIHLSEVQPNRIRKSLSAENTFSTDLKSEVEWLAALSEIFEELKRRVEKSGIKG 283
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS-LRLIGLRVTQFNE 303
RT+TLK+K F ++TR+ T ++Y + I + LL+ E VS +RL G+ ++ N
Sbjct: 284 RTVTLKIKYHDFNIQTRSRTFEQYPEEGK-IWETVLELLRQEALVSPVRLFGIGLSNLNV 342
Query: 304 DKVRA 308
++ R
Sbjct: 343 EEERV 347
>gi|407853254|gb|EKG06320.1| DNA polymerase kappa, putative,DNA polymerase IV, putative
[Trypanosoma cruzi]
Length = 604
Score = 171 bits (433), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 110/316 (34%), Positives = 161/316 (50%), Gaps = 21/316 (6%)
Query: 3 FELLS-----ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNF 57
F++LS ARR+GVR+ MPG+I KLCP L+ VPTDF Y + + R + YDPNF
Sbjct: 189 FDMLSTTNYVARRYGVRSGMPGYIGVKLCPSLVIVPTDFDAYHAEAAVVRGIAAAYDPNF 248
Query: 58 MAASLDEAYLDITEVCRER-GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDI 116
+ LDE +++T ++ G++ +A E R V+ E LT SAG+ P LAK+ S+
Sbjct: 249 TSVGLDELTMEVTAYLQQHPGMTAGNVASEFRARVFAETQLTASAGIGPTATLAKIASNY 308
Query: 117 NKPNGQFVLP-NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLC 175
KPNGQ L R VM F+ LP+R + GIG+ TE IL + GIN E+ + LC
Sbjct: 309 EKPNGQHDLRLRTRQDVMEFMKDLPVRTVPGIGRSTESILHGL-GINLLGEIYDRRVELC 367
Query: 176 AVFSHSTADFFLSVGLGL----------GSTNTPQARFRKSISSERTFSVTEDKALLYRK 225
+ + T F L +G+ G T +A RKSI ERTF + L +
Sbjct: 368 YILTEKTFCFLLGSSMGVVRWMDADTNDGGERTTEAE-RKSIGMERTFRNLSSRLELQQI 426
Query: 226 LAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK- 284
+ +++ R + LK K ASF+V + L ++ E + + LL
Sbjct: 427 AHSALQTAHRRLEENEFFCRQIVLKTKRASFQVHQYSKNLPQHSDDLETLRRGVDELLLR 486
Query: 285 -AELPVSLRLIGLRVT 299
A+ LRL+G+R+
Sbjct: 487 IADQYAFLRLVGVRLA 502
>gi|311747596|ref|ZP_07721381.1| DNA polymerase IV [Algoriphagus sp. PR1]
gi|126575578|gb|EAZ79888.1| DNA polymerase IV [Algoriphagus sp. PR1]
Length = 365
Score = 171 bits (433), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 115/285 (40%), Positives = 166/285 (58%), Gaps = 14/285 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++GV +AM IA + CP LIF F +Y S + R+VF +Y SLDEA+L
Sbjct: 55 ARKYGVYSAMASSIAVRKCPHLIFAKPRFDRYRELSLMIREVFYEYTDLVEPLSLDEAFL 114
Query: 68 DITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQ-FVL 125
D+TE ++GI S I IA ++R + E+ L SAGV+ N+ LAK+ SD+NKPNGQ ++L
Sbjct: 115 DVTE--NKKGINSAILIARQIRQKIKEKTNLNASAGVSYNKFLAKIASDLNKPNGQAYIL 172
Query: 126 PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTAD 184
P D F+ LPI K GIGKVT ++ + GI+ ++ Q L F S
Sbjct: 173 PED---AEEFLEKLPIGKFFGIGKVTAEKMQKI-GIHNGADLKQFSLQFLSKKFGKSGLH 228
Query: 185 FFLSVGLGLGSTNTPQARFRKSISSERTFSV--TEDKALLYRKLAEIAEMLSADMQKEGL 242
+F ++ G+ + R RKS+S+E TF V T D+ LL KL I E + + K G+
Sbjct: 229 YF-NIVRGIHLSEVQPHRVRKSLSAENTFEVDLTTDEELL-NKLQPIYEEVIRRLDKSGI 286
Query: 243 RGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL 287
+GRT+TLKLK + F ++TR+ TL++Y E I + A LL+ E+
Sbjct: 287 KGRTVTLKLKYSDFSLQTRSKTLEQY-PDKEMIWEIAKELLEQEV 330
>gi|402831592|ref|ZP_10880272.1| ImpB/MucB/SamB family protein [Capnocytophaga sp. CM59]
gi|402281665|gb|EJU30292.1| ImpB/MucB/SamB family protein [Capnocytophaga sp. CM59]
Length = 366
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 108/297 (36%), Positives = 166/297 (55%), Gaps = 6/297 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARR+GVR+AM G AR+LCP+LIFV F +Y S R +F +Y SLDEAYL
Sbjct: 48 ARRYGVRSAMAGTTARQLCPQLIFVKPRFERYREISMQIRTIFYEYTDLVEPLSLDEAYL 107
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T + S IA+++R ++E+ GLT SAG++ N+ +AK+ SD NKPNGQ +P
Sbjct: 108 DVT-TNKMDMPSATLIAQQIRAKIFEQTGLTASAGISINKFIAKIASDYNKPNGQKTVPP 166
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
+ V+ F++ L I+K GIGKVT + GI T ++ K + + ++F
Sbjct: 167 EE--VLDFLAQLDIKKFYGIGKVTAQKMYQK-GIFTGADLRAKTLEELQEYFGNNGEYFY 223
Query: 188 SVGLGLGSTNTPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLRGRT 246
+ G+ + R KSI E TF + + L ++ E ++ + K+ L +T
Sbjct: 224 QIARGIHLSPVQPFRLVKSIGVEHTFETNISSEIFMEEPLKKLCEEVAQRLAKKQLLAKT 283
Query: 247 LTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFN 302
+TLKLK + F+ +TR+ TL ++ S I + S LL E L S+RL+G+ ++ FN
Sbjct: 284 VTLKLKYSDFKQQTRSRTLIDFVGDSATIYQVISELLYQERLRESVRLLGVSLSHFN 340
>gi|344205893|ref|YP_004791034.1| DNA polymerase IV [Stenotrophomonas maltophilia JV3]
gi|343777255|gb|AEM49808.1| DNA polymerase IV [Stenotrophomonas maltophilia JV3]
Length = 364
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 120/306 (39%), Positives = 167/306 (54%), Gaps = 21/306 (6%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FGVR+AMP A +LCP+ IFVP DF +Y S R++F ++ SLDEAYL
Sbjct: 50 ARVFGVRSAMPAVRAERLCPDAIFVPPDFARYKAVSQQVREIFLRHTDLVEPLSLDEAYL 109
Query: 68 DITEVCRERGISGIE----IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF 123
D+TE SGIE IA +RT + EE LT SAG+APN+ LAK+ SD KP+GQF
Sbjct: 110 DVTEPK-----SGIELATDIARTIRTQIREETRLTASAGIAPNKFLAKIASDWRKPDGQF 164
Query: 124 VLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTA 183
V+P R V F+ SLP+ ++ G+GKV E L GI TC ++ Q + S
Sbjct: 165 VIPPQR--VDAFLLSLPVNRVPGVGKVMEGKL-AARGIVTCGDLRQWALIDLEEAFGSFG 221
Query: 184 DFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEG 241
+ G+ + +SISSE TF+ ED L L + ++AE +K
Sbjct: 222 RSLYNRARGIDERPVEPDQQVQSISSEDTFA--EDLPLEDLGEAIVQLAEKTWNATRKTE 279
Query: 242 LRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKA--ELPVS--LRLIGLR 297
G T+ LKLKTA F + TR+ T ++ S E+ L+ ++ L+A +LP RL+G+
Sbjct: 280 RVGHTVVLKLKTAQFRILTRSFTPERPPESMEE-LRDIALALRARVDLPAETRYRLVGVG 338
Query: 298 VTQFNE 303
+ F E
Sbjct: 339 LGGFRE 344
>gi|334345787|ref|YP_004554339.1| DNA polymerase IV [Sphingobium chlorophenolicum L-1]
gi|334102409|gb|AEG49833.1| DNA polymerase IV [Sphingobium chlorophenolicum L-1]
Length = 359
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 111/302 (36%), Positives = 171/302 (56%), Gaps = 9/302 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++GVR+AMPG AR+LCP+L+FV F Y S R++F ++ SLDEAYL
Sbjct: 51 ARKYGVRSAMPGARARRLCPDLLFVRPRFEVYRAVSAQVREIFSRFTDIIQPLSLDEAYL 110
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T + S IAEE+R + EE GLT SAGV+ N+L+AK+ SD NKP+G V+
Sbjct: 111 DVTR-NKPDIPSATRIAEEIRRLIREETGLTASAGVSYNKLIAKLASDQNKPDGICVVRP 169
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
+ A FI+ +P+R+I G+G VT ++ GI T ++ + S A F+
Sbjct: 170 EEGA--AFIAKMPVRRIHGVGPVTAKRMQ-ALGIETGADLRARDLAFLQHHFGSAALFYY 226
Query: 188 SVGLGLGSTNTPQARFRKSISSERTF--SVTEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
G + + RKS+S E TF +T + AL+ ++ IAE L + ++K G GR
Sbjct: 227 RASRGEDDRPVHERQERKSVSVEDTFFDDLTAEDALIT-EIDRIAENLWSRIEKSGAYGR 285
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSL--RLIGLRVTQFNE 303
T+ LK+K A F + TR+ + + S + + + LL+A+LP+ + RL+GL V +
Sbjct: 286 TVVLKVKFADFRIITRSKSFGGPVRSPDILAETGRALLRAQLPLRMGARLLGLGVHNLDH 345
Query: 304 DK 305
++
Sbjct: 346 EE 347
>gi|406663875|ref|ZP_11071888.1| DNA polymerase IV [Cecembia lonarensis LW9]
gi|405551867|gb|EKB47480.1| DNA polymerase IV [Cecembia lonarensis LW9]
Length = 361
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 110/298 (36%), Positives = 164/298 (55%), Gaps = 9/298 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR +GVR+AM G +A CP+L+FV F +Y S+ R++F Y SLDEA+L
Sbjct: 50 ARFYGVRSAMSGKLAALKCPKLVFVKPRFDRYKELSNQIREIFYDYTDLVEPLSLDEAFL 109
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQ-FVLP 126
D+TE + S IA+E+R + EE GL SAG++ N+ LAK SDINKPNGQ +LP
Sbjct: 110 DVTE-NKVNNPSATLIAQEIRGRIREEVGLNASAGISYNKFLAKTASDINKPNGQAVILP 168
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADF 185
+ A F+ LPI K GIGKVT ++ + GI+ ++ Q L F S F
Sbjct: 169 KEAEA---FLEKLPIEKFFGIGKVTAEKMKSI-GIHNGHDLKQFSIQYLTKKFGKSGLHF 224
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRG 244
F ++ G+ + R RKS+S+E TF D+ L EI E L + + G++G
Sbjct: 225 F-NIVRGIHLSEVQPNRIRKSLSAENTFEKDLSDRVSFEAALLEIFEELKRRINRTGIKG 283
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQFN 302
RT+TLK+K + F ++TR+ T ++Y + +L + L + +RL G+ ++ N
Sbjct: 284 RTVTLKIKYSDFTIQTRSKTFEQYPEEQKIWETVMDLLQQDALALPVRLFGIGLSNLN 341
>gi|225023349|ref|ZP_03712541.1| hypothetical protein EIKCOROL_00207 [Eikenella corrodens ATCC
23834]
gi|224943827|gb|EEG25036.1| hypothetical protein EIKCOROL_00207 [Eikenella corrodens ATCC
23834]
Length = 361
Score = 170 bits (431), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 113/302 (37%), Positives = 162/302 (53%), Gaps = 19/302 (6%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFG+ +AMP AR+LCP+ +FVP F Y S VF ++ SLDEAYL
Sbjct: 50 ARRFGLHSAMPAATARRLCPQAVFVPPRFHLYREVSQQIHAVFRQHTDLVEPLSLDEAYL 109
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T ++ EIA +R + + GLT SAG+APN+ LAK+ SD KPNGQFV+P
Sbjct: 110 DVTH-NKQNLPYASEIAAAIRAEILRQTGLTASAGIAPNKFLAKIASDWRKPNGQFVIPP 168
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSL--LCAVFSHSTA 183
R+A F+ +LP+ KI G+GK T + G+ T ++ +Q+G L L + +
Sbjct: 169 PRIA--QFLLTLPLGKIPGVGKKTLQKM-HALGLQTAGDLQKMQRGELVNLFGRWGYRLY 225
Query: 184 DFFLSVGLGLGSTNTP--QARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEG 241
D L G N P R R IS+E T + + R LA++A+ L A Q++
Sbjct: 226 D------LARGIDNRPVQPQRERLQISTEITLPQDLPLSKIVRHLADLAKDLWAQAQRKQ 279
Query: 242 LRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS--LRLIGLRVT 299
++ TLTLKLKTA F + TR+ T + + L+ A+ L +P RLIGL ++
Sbjct: 280 VQAHTLTLKLKTADFHILTRSQTYSSVLPDAA-ALEQAARQLAQRMPAGRDYRLIGLGIS 338
Query: 300 QF 301
Sbjct: 339 HL 340
>gi|241759928|ref|ZP_04758028.1| DNA polymerase IV [Neisseria flavescens SK114]
gi|241319936|gb|EER56332.1| DNA polymerase IV [Neisseria flavescens SK114]
Length = 352
Score = 170 bits (431), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 108/299 (36%), Positives = 163/299 (54%), Gaps = 11/299 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG+ +AM A++LCP+ +FVP F Y S VF +Y SLDEAYL
Sbjct: 49 ARKFGLHSAMSVATAKRLCPQAVFVPPHFDLYRQVSAQIHAVFRRYTDLIEPLSLDEAYL 108
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T+ E E+A+ +R ++EE GLT SAG+APN+ LAK+ SD KPNGQFVLP
Sbjct: 109 DVTQNF-ENVPYASEVAKRIRAEIFEETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPP 167
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADF 185
+ +M F+ SLP+ KI G+GKVT + + GI T ++ ++G LL + +
Sbjct: 168 QK--IMAFLESLPLGKIPGVGKVTLKKM-NALGIQTAGDLRRFERGELLNHFGRYGYRLY 224
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
L+ G+ + R + IS+E T A + L +AE L ++++ + +
Sbjct: 225 DLARGIDERPVKAERERLQ--ISTEITLPEDLSLAQVSSHLPHLAEDLWRQIERKNVEAK 282
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV---SLRLIGLRVTQF 301
+TLKLKT F + TR++T + S +L+ A LL+ P + RLIG+ V+
Sbjct: 283 GVTLKLKTHDFRIITRSLTYSSVLPDSTSLLQAAHTLLQRIPPQREDAFRLIGIGVSHL 341
>gi|420238527|ref|ZP_14742925.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Rhizobium sp. CF080]
gi|398086197|gb|EJL76826.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Rhizobium sp. CF080]
Length = 366
Score = 170 bits (431), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 110/310 (35%), Positives = 169/310 (54%), Gaps = 16/310 (5%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FGV +AMP A++ CP+LIFVP F Y S R++F +Y SLDEAYL
Sbjct: 55 ARAFGVHSAMPSVTAKRKCPDLIFVPPRFDVYKAISQQIREIFAEYTMLIEPLSLDEAYL 114
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-P 126
D+TE + I+ EIA E+R + + GL SAG++ N+ LAK+ SD+NKPNGQ V+ P
Sbjct: 115 DVTENLKGMAIA-TEIALEIRAKIKQVTGLNASAGISYNKFLAKMASDLNKPNGQAVITP 173
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFF 186
N+ +F+ +LP++K G+G T +R + GI T ++ K + + +F
Sbjct: 174 NNG---PSFVEALPVKKFHGVGPATAERMRKL-GIETGLDLKSKSLIFLQEHFGKSGPYF 229
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAE---IAEMLSADMQKEGLR 243
V G+ R RKS+ +E TF ED L R AE +++ + + +G+
Sbjct: 230 YGVARGIDERRVRADRIRKSVGAEDTF--VEDIDDLERATAELKPLSDKIWLYCEAQGIS 287
Query: 244 GRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQF 301
G+T+T+K+K + F TR+ T ++ D+ AS LL P S+RL+G+ ++
Sbjct: 288 GKTVTVKIKYSDFTQATRSRTGIAPFANMSDVFDAASALLATVYPFKRSVRLLGVTLSSL 347
Query: 302 NEDKVRAPSD 311
+D+ PSD
Sbjct: 348 TKDQ---PSD 354
>gi|20806775|ref|NP_621946.1| DNA polymerase IV [Thermoanaerobacter tengcongensis MB4]
gi|254478433|ref|ZP_05091810.1| ImpB/MucB/SamB family protein [Carboxydibrachium pacificum DSM
12653]
gi|22095608|sp|P58965.1|DPO4_THETN RecName: Full=DNA polymerase IV; Short=Pol IV
gi|20515235|gb|AAM23550.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Thermoanaerobacter tengcongensis MB4]
gi|214035604|gb|EEB76301.1| ImpB/MucB/SamB family protein [Carboxydibrachium pacificum DSM
12653]
Length = 384
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 108/298 (36%), Positives = 172/298 (57%), Gaps = 11/298 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++G+ +AMP ++A+KLCP+ IF+P +Y S+ ++ P S+DEAYL
Sbjct: 48 ARKYGIHSAMPMYMAKKLCPQGIFLPVRRKRYEEVSEQIFRILYDITPFVEPVSIDEAYL 107
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T V + + +IA E++ V + GLT S G++ N+ LAK+ SD NKP+G V+
Sbjct: 108 DVTHVDK----NPEDIALEIKKRVKDATGLTVSVGISYNKFLAKLASDWNKPDGLMVITE 163
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHSTADFF 186
D V + LP+ K+ GIG+ + LR + GI T E++L+ L +F + + +
Sbjct: 164 D--MVPEILKPLPVTKVHGIGEKSAEKLRSI-GIETVEDLLKLPQENLIELFGKTGVEIY 220
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
+ G+ R KSI E+T T++K LL + L E +E++S ++ KE L R
Sbjct: 221 NRIR-GIDERPVETMREIKSIGKEKTLEKDTKNKELLIQHLKEFSEIVSEELIKERLYCR 279
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHA-SVLLKAELPVSLRLIGLRVTQFN 302
T+T+K+KTA F V T++ T+ KYI SEDI + A +L + +L +RLIGL V+ +
Sbjct: 280 TVTVKIKTADFAVHTKSKTVDKYIRFSEDIYEVAKGILEEWKLEQYVRLIGLSVSNLS 337
>gi|33592070|ref|NP_879714.1| DNA polymerase IV [Bordetella pertussis Tohama I]
gi|33596271|ref|NP_883914.1| DNA polymerase IV [Bordetella parapertussis 12822]
gi|33602069|ref|NP_889629.1| DNA polymerase IV [Bordetella bronchiseptica RB50]
gi|384203372|ref|YP_005589111.1| DNA polymerase IV [Bordetella pertussis CS]
gi|408415972|ref|YP_006626679.1| DNA-damage-inducible protein p [Bordetella pertussis 18323]
gi|410419849|ref|YP_006900298.1| DNA-damage-inducible protein p [Bordetella bronchiseptica MO149]
gi|410473391|ref|YP_006896672.1| DNA-damage-inducible protein p [Bordetella parapertussis Bpp5]
gi|412338221|ref|YP_006966976.1| DNA-damage-inducible protein p [Bordetella bronchiseptica 253]
gi|427814305|ref|ZP_18981369.1| DNA-damage-inducible protein p [Bordetella bronchiseptica 1289]
gi|427821228|ref|ZP_18988291.1| DNA-damage-inducible protein p [Bordetella bronchiseptica D445]
gi|427821749|ref|ZP_18988811.1| DNA-damage-inducible protein p [Bordetella bronchiseptica Bbr77]
gi|33566040|emb|CAE36936.1| DNA-damage-inducible protein p [Bordetella parapertussis]
gi|33571714|emb|CAE41211.1| DNA-damage-inducible protein p [Bordetella pertussis Tohama I]
gi|33576507|emb|CAE33585.1| DNA-damage-inducible protein p [Bordetella bronchiseptica RB50]
gi|332381486|gb|AEE66333.1| DNA polymerase IV [Bordetella pertussis CS]
gi|401778142|emb|CCJ63525.1| DNA-damage-inducible protein p [Bordetella pertussis 18323]
gi|408443501|emb|CCJ50161.1| DNA-damage-inducible protein p [Bordetella parapertussis Bpp5]
gi|408447144|emb|CCJ58816.1| DNA-damage-inducible protein p [Bordetella bronchiseptica MO149]
gi|408768055|emb|CCJ52813.1| DNA-damage-inducible protein p [Bordetella bronchiseptica 253]
gi|410565305|emb|CCN22860.1| DNA-damage-inducible protein p [Bordetella bronchiseptica 1289]
gi|410572228|emb|CCN20497.1| DNA-damage-inducible protein p [Bordetella bronchiseptica D445]
gi|410587014|emb|CCN02044.1| DNA-damage-inducible protein p [Bordetella bronchiseptica Bbr77]
Length = 361
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 112/320 (35%), Positives = 171/320 (53%), Gaps = 37/320 (11%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARR+GV +AM A++LCP+ ++VP DF +Y S R +F ++ SLDEAYL
Sbjct: 51 ARRYGVHSAMAAARAQRLCPDAVYVPPDFNRYREVSRQVRAIFARHTDLIEPLSLDEAYL 110
Query: 68 DITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP 126
D+T C + G+ S E+A+ +R + EE GLT SAGVAPN+ LAK+ SD NKP+G FV+
Sbjct: 111 DVT--CNKLGLASATEVAQIIRRQIREETGLTASAGVAPNKFLAKIASDWNKPDGLFVIK 168
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADF- 185
R V+ F+ LP+RK+ G+GKV + L + GI T ++ + HS A+
Sbjct: 169 PSR--VLDFLQPLPVRKVPGVGKVMQARL-EQLGIQTVGDLSR----------HSVAELE 215
Query: 186 ---------FLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSAD 236
+ G+ + + +S+E TF D L L E E L+A
Sbjct: 216 QRFGRYGVRLYELARGIDERAVQADQPAQQVSAETTF----DTDLALEALGEALERLAAK 271
Query: 237 MQKEGLR----GRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL-LKAELPVS- 290
+ ++G + GRT LKLKT F + TR++TL + S+ ++ A L + +LP
Sbjct: 272 VWEQGAKKGRIGRTTVLKLKTDRFRILTRSLTLMQPPGSAAELAAIARQLCTRVDLPAHT 331
Query: 291 -LRLIGLRVTQFNEDKVRAP 309
RL+G+ ++ F + + AP
Sbjct: 332 RYRLVGVGMSNFPDAQAEAP 351
>gi|443243201|ref|YP_007376426.1| DNA polymerase IV, damage-inducible protein [Nonlabens dokdonensis
DSW-6]
gi|442800600|gb|AGC76405.1| DNA polymerase IV, damage-inducible protein [Nonlabens dokdonensis
DSW-6]
Length = 349
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 111/302 (36%), Positives = 172/302 (56%), Gaps = 10/302 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++GVR+AMP A++LCP+LIFV + F +Y S R++F Y SLDEAYL
Sbjct: 39 ARKYGVRSAMPSVTAKRLCPDLIFVKSRFDRYREVSAQIREIFHDYTDLVEPLSLDEAYL 98
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQ-FVLP 126
D+TE + + I IA E+R +YE G+T SAG++ N+ +AK+ SD NKPNGQ ++P
Sbjct: 99 DVTENKYDFPSATI-IAYEIRRRIYETTGITASAGISVNKFIAKIASDYNKPNGQKTIVP 157
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADF 185
+ + + + RK GIGKVT + FGI T +++ +K L F S + +
Sbjct: 158 EEIIEFLEELEI---RKFHGIGKVTAEKMYQ-FGIFTGKDLKRKSLEFLVENFGKSGSHY 213
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLRG 244
+ V G+ + R RKS+ +ERTFS + + +L +IAE + + K + G
Sbjct: 214 YKIV-RGIHKSPVKPDRIRKSLGAERTFSENISSEVFMKERLIQIAEEIEKRIAKSDVSG 272
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFNE 303
+T+TLK+K F+ +TR+ TL +I + IL A L++ E S+RL+G+ ++ N
Sbjct: 273 KTVTLKIKYRDFKTQTRSKTLPYFIRDKQTILNTAIELMEQESFRESVRLLGITLSNLNT 332
Query: 304 DK 305
K
Sbjct: 333 GK 334
>gi|71411335|ref|XP_807921.1| DNA polymerase kappa [Trypanosoma cruzi strain CL Brener]
gi|70872021|gb|EAN86070.1| DNA polymerase kappa, putative [Trypanosoma cruzi]
Length = 597
Score = 169 bits (428), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 110/316 (34%), Positives = 161/316 (50%), Gaps = 21/316 (6%)
Query: 3 FELLS-----ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNF 57
F++LS ARR+GVR+ MPG+I KLCP L+ VPTDF Y + + R + YDPNF
Sbjct: 182 FDMLSTTNYVARRYGVRSGMPGYIGVKLCPSLVIVPTDFDAYHAEAAVVRGIAAAYDPNF 241
Query: 58 MAASLDEAYLDITEVCRER-GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDI 116
+ LDE +++T ++ G++ ++A E R V+ E LT SAG+ P LAK+ S+
Sbjct: 242 TSVGLDELTMEVTAYLQQHPGMTAGDVASEFRARVFAETQLTASAGIGPTATLAKIASNY 301
Query: 117 NKPNGQFVLP-NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLC 175
KPNGQ L R VM F+ LP+R + GIG+ TE IL IN E+ + LC
Sbjct: 302 EKPNGQHELRLRTREDVMEFMKDLPVRTVPGIGRSTESILHG-LDINLLGEIYDRRVELC 360
Query: 176 AVFSHSTADFFLSVGLGL----------GSTNTPQARFRKSISSERTFSVTEDKALLYRK 225
+ + T F L +G+ G T +A RKSI ERTF + L +
Sbjct: 361 YILTEKTFCFLLGSSMGVVRWMDADTNDGIERTTEAE-RKSIGMERTFRNLSSRLELQQI 419
Query: 226 LAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK- 284
+ +++ L R + LK K ASF+V + L ++ E + + LL
Sbjct: 420 AHSALQTAHRRLEENELVCRQIVLKTKRASFQVHQYSKNLPQHSDDLETLRRGVDELLLR 479
Query: 285 -AELPVSLRLIGLRVT 299
A+ LRL+G+R+
Sbjct: 480 IADQYAFLRLVGVRLA 495
>gi|408823700|ref|ZP_11208590.1| DNA polymerase IV [Pseudomonas geniculata N1]
Length = 386
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 118/306 (38%), Positives = 164/306 (53%), Gaps = 21/306 (6%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FGVR+AMP A +LCP+ IFVP DF +Y S R +F ++ SLDEAYL
Sbjct: 71 ARVFGVRSAMPAVRAERLCPDAIFVPPDFARYKAVSQQVRAIFLRHTDLVEPLSLDEAYL 130
Query: 68 DITEVCRERGISGIE----IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF 123
D+TE SGIE IA +R + EE LT SAG+APN+ LAK+ SD KP+GQF
Sbjct: 131 DVTEPK-----SGIELATDIARTIRAQIREETNLTASAGIAPNKFLAKIASDWRKPDGQF 185
Query: 124 VLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTA 183
V+P R V F+ LP+ ++ G+GKV E L GI TC ++ Q + S
Sbjct: 186 VIPPQR--VDAFLQPLPVNRVPGVGKVMEGKL-AARGIVTCGDLRQWALIDLEEAFGSFG 242
Query: 184 DFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEG 241
+ G+ + +SISSE TF+ ED L L + ++AE +K
Sbjct: 243 RSLYNRARGIDERPVEPDQQVQSISSEDTFA--EDLPLEDLGEAIVQLAEKTWKATRKTE 300
Query: 242 LRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKA--ELPVS--LRLIGLR 297
G T+ LKLKTA F + TR+ T ++ S E+ L+ ++ L+A +LP RL+G+
Sbjct: 301 RVGHTVVLKLKTAQFRILTRSFTPERPPESMEE-LRDIALALRARVDLPAETRYRLVGVG 359
Query: 298 VTQFNE 303
+ F E
Sbjct: 360 LGGFRE 365
>gi|410030700|ref|ZP_11280530.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Marinilabilia sp. AK2]
Length = 358
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 112/299 (37%), Positives = 166/299 (55%), Gaps = 11/299 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR +GVR+AM G +A C +L+FV F +Y S+ R++F Y SLDEA+L
Sbjct: 50 ARAYGVRSAMSGKLAALKCSKLVFVKPRFDRYKELSNQIREIFYDYTDLVEPLSLDEAFL 109
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQ-FVLP 126
D+TE + S IA+E+R + EE GL SAG++ N+ LAK SDINKPNGQ +LP
Sbjct: 110 DVTE-NKVNNPSATLIAQEIRDRIKEEVGLNASAGISYNKFLAKTASDINKPNGQAVILP 168
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADF 185
+ A F+ LPI K GIGKVT ++ + GI+ ++ Q L F S F
Sbjct: 169 KEAEA---FLEKLPIEKFFGIGKVTAEKMKSI-GIHNGHDLKQFSLQYLTKKFGKSGLHF 224
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRG 244
F ++ G+ + R RKS+S+E TF D+ L EI E L + + G++G
Sbjct: 225 F-NIVRGIHLSEVQPNRIRKSLSAENTFEKDLSDRVSFEAALLEIFEELKRRINRTGIKG 283
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFN 302
RT+TLK+K + F ++TR+ T ++Y + I + LL+ E L + +RL G+ ++ N
Sbjct: 284 RTVTLKIKYSDFTIQTRSKTFEQY-PEEQKIWETVMDLLQQETLALPVRLFGIGLSNLN 341
>gi|300022279|ref|YP_003754890.1| DNA-directed DNA polymerase [Hyphomicrobium denitrificans ATCC
51888]
gi|299524100|gb|ADJ22569.1| DNA-directed DNA polymerase [Hyphomicrobium denitrificans ATCC
51888]
Length = 360
Score = 169 bits (427), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 115/304 (37%), Positives = 170/304 (55%), Gaps = 15/304 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FGVR+AMP A + CPELIFV F Y S R +F +Y SLDEAYL
Sbjct: 52 ARAFGVRSAMPSTTAIRQCPELIFVQPRFDAYRAVSQQIRAIFARYTDVIEPLSLDEAYL 111
Query: 68 DITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP 126
D+T RG+ + + A E+R + E GLT SAGV+ N+ LAK+ SD+ KPNGQ+V+P
Sbjct: 112 DVT--ANPRGLPTASDTATEIRACILSETGLTASAGVSYNKFLAKLASDMRKPNGQYVIP 169
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEML-QKGSLLCAVFSHSTADF 185
R A FI++LP++K GIG VT + + GI T ++ Q L F S A +
Sbjct: 170 PQRGA--EFIATLPVKKFHGIGPVTAAKM-NALGIQTGADLRSQSIEFLQRQFGKSGA-W 225
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL---LYRKLAEIAEMLSADMQKEGL 242
+ ++ G R RKS SE TFS ED+ + + + E+A+ + A +K
Sbjct: 226 YYAIARGEDDRPVEPNRPRKSSGSETTFS--EDRVIPAEIEAGVLEMADDVWAWCEKNQS 283
Query: 243 RGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS--LRLIGLRVTQ 300
G T T+K+K A F + TR+ T + I+S E + + + L+++ PV+ +RL+G+ V+
Sbjct: 284 FGATATVKIKYADFRIVTRSRTASRPITSRELLHETSLALVRSIYPVAIGIRLVGVSVSN 343
Query: 301 FNED 304
F+ +
Sbjct: 344 FSSN 347
>gi|390958702|ref|YP_006422459.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Terriglobus roseus DSM 18391]
gi|390413620|gb|AFL89124.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Terriglobus roseus DSM 18391]
Length = 370
Score = 168 bits (426), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 116/317 (36%), Positives = 173/317 (54%), Gaps = 20/317 (6%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFG+R+AMP A +LCPE +FVP DFT+Y S R +F ++ SLDEAYL
Sbjct: 52 ARRFGIRSAMPAVRAERLCPEAVFVPPDFTRYKAVSHAVRAIFERHTDAIEPLSLDEAYL 111
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-P 126
D+T + + IA+ +R +Y+E LT SAG+APN+ LAK+ SD KPNGQFV+ P
Sbjct: 112 DVT-TNKTSLPTATLIAKSIRQQIYDELNLTASAGIAPNKFLAKIASDWRKPNGQFVIQP 170
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFF 186
++ F+ +LP+ +I G+GKVTE + + GI ++ ++ A +
Sbjct: 171 HE---AEEFLRTLPVGRIPGVGKVTEARMAEA-GIKLVGDIY---AMSLATLEQHFGSYS 223
Query: 187 LSVG-LGLGSTNTPQA--RFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEG 241
L + L G + P R RK +S+E TF ED L L + +AE + +
Sbjct: 224 LRLHELARGIDHNPVVSNRVRKQVSAEDTFP--EDLPLTELEAHVCRLAEKVWKASEGNA 281
Query: 242 LRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELPVS--LRLIGLRV 298
R +T+ LKLKT F TR++T + +S+ ED++ A L + +LP RL+G+ +
Sbjct: 282 RRAKTVVLKLKTKEFNSLTRSLTPRTPVSTCEDLISTALGLRDRVDLPAQQLYRLVGVGL 341
Query: 299 TQFN-EDKVRAPSDPTQ 314
T F D A S+P +
Sbjct: 342 TNFELRDDSVADSEPAE 358
>gi|255536316|ref|YP_003096687.1| DNA polymerase IV [Flavobacteriaceae bacterium 3519-10]
gi|255342512|gb|ACU08625.1| DNA polymerase IV [Flavobacteriaceae bacterium 3519-10]
Length = 360
Score = 168 bits (426), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 105/281 (37%), Positives = 160/281 (56%), Gaps = 11/281 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR+AMPG +A + CP LI V F +Y S R +F +Y SLDEAYL
Sbjct: 49 ARKFGVRSAMPGRLALEKCPHLIVVKPRFQRYKEISQQIRSIFNEYTDLVEPLSLDEAYL 108
Query: 68 DITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP 126
D+TE ++GI S +IA E+R +YEE GLT SAG++ N+ LAKV SD NKPNGQ +
Sbjct: 109 DVTE--NKKGIESANDIAREIRGRIYEETGLTASAGISVNKFLAKVASDYNKPNGQKTIH 166
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL--LCAVFSHSTAD 184
+ ++ F+ LPI K GIGKVT + + ++ + L+ SL L +F S +
Sbjct: 167 PTQ--ILEFMEELPIEKFYGIGKVTANKMHEMHIFKGAD--LKNKSLEELIRLFGKS-GN 221
Query: 185 FFLSVGLGLGSTNTPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLR 243
++ +V G+ ++ R +KS++ E TF D+ ++ +L I+E L + K+ ++
Sbjct: 222 YYYNVVRGIHNSEVKPHRIQKSVAVEETFWDNLLDEEQVFAQLKTISEELEERLLKKEIK 281
Query: 244 GRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK 284
G+++TLK+K F TR+ T Y + D + A L +
Sbjct: 282 GKSITLKIKYKDFTQYTRSTTRDSYFGGAHDFFETARKLWE 322
>gi|58039310|ref|YP_191274.1| DNA polymerase IV [Gluconobacter oxydans 621H]
gi|81557124|sp|Q5FSM8.1|DPO4_GLUOX RecName: Full=DNA polymerase IV; Short=Pol IV
gi|58001724|gb|AAW60618.1| DNA polymerase IV, damage-inducible protein P [Gluconobacter
oxydans 621H]
Length = 356
Score = 168 bits (426), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 109/299 (36%), Positives = 160/299 (53%), Gaps = 9/299 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFGVR+AMP A++LCPEL+FVP F Y S +F +Y P SLDEAYL
Sbjct: 49 ARRFGVRSAMPSVTAKRLCPELLFVPARFDVYRSVSAQIHDIFSRYTPLIQPLSLDEAYL 108
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T+ G S +A+ +R ++ E GLT SAGV+ NR LAK+ SD KP+G FV+
Sbjct: 109 DLTDHLGAYG-SATLVADRIRADIHAETGLTASAGVSYNRFLAKLASDYRKPDGLFVI-T 166
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
M F+++LP+ GIG +R GI T ++ ++ A F+
Sbjct: 167 PAMGP-EFVAALPVDAFHGIGPAMARKMR-ALGIETGADLRERDIETLTRHFGKAATFYY 224
Query: 188 SVGLGLGSTNTPQARFRKSISSERTF--SVTEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
+ G+ R RKS+ +E+T+ +T + A ++ L +IA L Q+ L+ R
Sbjct: 225 GISRGIDHRPVVVNRERKSLGTEQTYLRDLTSE-ADAHQALTQIAATLWGSAQRRQLQAR 283
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFN 302
T+TLK+K A F TRA TL + S E +L+ L+ P +RL+GL ++ F+
Sbjct: 284 TVTLKVKYADFRQITRARTLSAPVPSEEVLLETGQSLMAPLFPFVPGVRLLGLTLSGFH 342
>gi|335037525|ref|ZP_08530830.1| DNA polymerase IV [Agrobacterium sp. ATCC 31749]
gi|333790976|gb|EGL62368.1| DNA polymerase IV [Agrobacterium sp. ATCC 31749]
Length = 365
Score = 168 bits (426), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 108/302 (35%), Positives = 162/302 (53%), Gaps = 9/302 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FGVR+AMP A + CP+LIFVP F Y S R +F +Y SLDEAYL
Sbjct: 55 AREFGVRSAMPSVTAARRCPDLIFVPPRFDVYKAVSQQIRAIFAEYTRLIEPLSLDEAYL 114
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-P 126
D+TE + I+ EIA E+R + + GL SAG++ N+ LAK+ SD+NKPNGQ V+ P
Sbjct: 115 DVTENLKGMEIA-TEIASEIRERIKQITGLNASAGISYNKFLAKMASDLNKPNGQAVITP 173
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFF 186
+ A F+ L ++K G+G T + FGI T ++ K A + +F
Sbjct: 174 KNGPA---FVEQLAVKKFHGVGPATAEKMHR-FGIETGADLKSKSLQFLAEHFGKSGAYF 229
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
+ G+ R RKS+ +E TFSV D L +L +AE + + + + G+
Sbjct: 230 YGIARGIDERQVRPDRIRKSVGAEDTFSVDINDLDLATAELRPLAEKVWHHCEAQRVSGK 289
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFNE 303
T+T+K+K + F TR+ T ++ ++IL+ AS LL P S+RL+G+ ++
Sbjct: 290 TVTVKVKYSDFTQATRSRTSALPVNGIQEILEAASALLATVYPFRRSVRLLGVTLSSLTN 349
Query: 304 DK 305
D+
Sbjct: 350 DQ 351
>gi|326386774|ref|ZP_08208395.1| DNA polymerase IV [Novosphingobium nitrogenifigens DSM 19370]
gi|326208827|gb|EGD59623.1| DNA polymerase IV [Novosphingobium nitrogenifigens DSM 19370]
Length = 380
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 113/300 (37%), Positives = 161/300 (53%), Gaps = 11/300 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FGVR+AMP A +LCPEL+FVP F Y S VF Y P SLDEAYL
Sbjct: 61 ARTFGVRSAMPSTRAARLCPELVFVPPRFDVYRAVSRQIHAVFRDYTPLVEPLSLDEAYL 120
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T R G S IAE +R + E GLT SAGV+ N+ LAK+ SD NKP+G V+
Sbjct: 121 DVTADLRGIG-SATRIAEIIRQRIRAETGLTASAGVSYNKFLAKLASDQNKPDGLCVIRP 179
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH--STADF 185
A F++ LP+ + GIG + + GI T ++ +G L + H + AD+
Sbjct: 180 GEGA--DFVAGLPVARFHGIGPRGAERM-EALGIRTGADL--RGVELAVLRKHFGAQADY 234
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRK-LAEIAEMLSADMQKEGLRG 244
G+ + R RKS+ ERTF R+ L +I E++ A + K G+ G
Sbjct: 235 LFRAARGIDLRSVEPDRPRKSVGGERTFDRDLSSGTALREALDKITEIVWARIVKAGVHG 294
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFN 302
RT+TLKLKT+ F+ TRA + + ++ ++ + LL A LP+ +RL+GL ++ +
Sbjct: 295 RTVTLKLKTSDFQAITRARSFARPVADQDEFARAGRELLDALLPLPQPIRLMGLTLSGLD 354
>gi|256379783|ref|YP_003103443.1| DNA-directed DNA polymerase [Actinosynnema mirum DSM 43827]
gi|255924086|gb|ACU39597.1| DNA-directed DNA polymerase [Actinosynnema mirum DSM 43827]
Length = 430
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 110/301 (36%), Positives = 166/301 (55%), Gaps = 10/301 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FGVR+AMP AR+L P +F+P DFTKY S ++F + P SLDEA+L
Sbjct: 73 AREFGVRSAMPTAHARRLAPHAVFLPPDFTKYRDVSRGVMELFRQVTPLVEPLSLDEAFL 132
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+ R + EIA +R V E G+TCS GVA + LAK+ S + KP+G V+P
Sbjct: 133 DVGGALRRLRATPAEIAARVRVDVEREHGITCSVGVASTKFLAKLSSGMCKPDGLMVVPK 192
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFF 186
DR + F+ LP+ + G+GK T L D G+ T ++ L L + A+
Sbjct: 193 DR--ALEFLHPLPVGALWGVGKRTAEQL-DRLGLETVGDVAAAPLLRLRKAVGVALAEHL 249
Query: 187 LSVGLGLGSTNTPQARF--RKSISSERTFSVTE-DKALLYRKLAEIAEMLSADMQKEGLR 243
+ L G + P + KSI +E TF V D+A+L +L ++E +A ++ +GLR
Sbjct: 250 YA--LARGHDDRPVVPYTREKSIGAEETFEVDHFDRAVLKLELLRLSERTAASLRAKGLR 307
Query: 244 GRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV-SLRLIGLRVTQFN 302
GRT+++K++ A F TR+ TL+ + ++ A+ LL +P ++RLIG+RV Q +
Sbjct: 308 GRTVSIKVRFADFTTITRSKTLRVATDVAREVYATATSLLDDHVPPGAVRLIGVRVEQLS 367
Query: 303 E 303
E
Sbjct: 368 E 368
>gi|319638499|ref|ZP_07993261.1| DNA polymerase IV [Neisseria mucosa C102]
gi|317400248|gb|EFV80907.1| DNA polymerase IV [Neisseria mucosa C102]
Length = 352
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 106/299 (35%), Positives = 163/299 (54%), Gaps = 11/299 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG+ +AM A++LCP+ +FVP F Y S VF +Y SLDEAYL
Sbjct: 49 ARKFGLHSAMSVATAKRLCPQAVFVPPHFDLYRQVSAQIHAVFRRYTDLIEPLSLDEAYL 108
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T+ + + E+A+ +R ++EE GLT SAG+APN+ LAK+ SD KPNGQFVLP
Sbjct: 109 DVTQNFKNIPYAS-EVAKRIRAEIFEETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPP 167
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADF 185
+ +M F+ SLP+ KI G+GKVT + + G+ T ++ ++G LL + +
Sbjct: 168 PK--IMAFLESLPLGKIPGVGKVTLKKM-NALGMQTAGDLRRFERGELLNHFGRYGYRLY 224
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
L+ G+ + R + IS+E T A L +AE L ++++ + +
Sbjct: 225 DLARGIDERPVKAERERLQ--ISTEITLPEDLSLAQASSHLPHLAEDLWRQIERKNVEAK 282
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV---SLRLIGLRVTQF 301
+TLKLKT F + TR++T + S +L+ A LL+ P + RLIG+ V+
Sbjct: 283 GVTLKLKTHDFRIITRSLTYSSVLPDSASLLQAAHTLLQRIPPQREDAFRLIGIGVSHL 341
>gi|16119697|ref|NP_396403.1| DNA polymerase IV [Agrobacterium fabrum str. C58]
gi|22095614|sp|Q8UJK7.2|DPO42_AGRT5 RecName: Full=DNA polymerase IV 2; Short=Pol IV 2
gi|15162281|gb|AAK90844.1| DNA polymerase IV [Agrobacterium fabrum str. C58]
Length = 357
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 108/302 (35%), Positives = 162/302 (53%), Gaps = 9/302 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FGVR+AMP A + CP+LIFVP F Y S R +F +Y SLDEAYL
Sbjct: 47 AREFGVRSAMPSVTAARRCPDLIFVPPRFDVYKAVSQQIRAIFAEYTRLIEPLSLDEAYL 106
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-P 126
D+TE + I+ EIA E+R + + GL SAG++ N+ LAK+ SD+NKPNGQ V+ P
Sbjct: 107 DVTENLKGMEIA-TEIASEIRERIKQITGLNASAGISYNKFLAKMASDLNKPNGQAVITP 165
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFF 186
+ A F+ L ++K G+G T + FGI T ++ K A + +F
Sbjct: 166 KNGPA---FVEQLAVKKFHGVGPATAEKMHR-FGIETGADLKSKSLQFLAEHFGKSGAYF 221
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
+ G+ R RKS+ +E TFSV D L +L +AE + + + + G+
Sbjct: 222 YGIARGIDERQVRPDRIRKSVGAEDTFSVDINDLDLATAELRPLAEKVWHHCEAQRVSGK 281
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFNE 303
T+T+K+K + F TR+ T ++ ++IL+ AS LL P S+RL+G+ ++
Sbjct: 282 TVTVKVKYSDFTQATRSRTSALPVNGIQEILEAASALLATVYPFRRSVRLLGVTLSSLTN 341
Query: 304 DK 305
D+
Sbjct: 342 DQ 343
>gi|329893969|ref|ZP_08269988.1| DNA polymerase IV [gamma proteobacterium IMCC3088]
gi|328923368|gb|EGG30686.1| DNA polymerase IV [gamma proteobacterium IMCC3088]
Length = 361
Score = 168 bits (425), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 111/299 (37%), Positives = 166/299 (55%), Gaps = 15/299 (5%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGV++AMP A++LCP+LIFV F Y S R++F +Y SLDEAYL
Sbjct: 39 ARKFGVKSAMPSVTAQRLCPDLIFVKARFDVYRSVSAQIREIFSRYTDVIEPLSLDEAYL 98
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQ-FVLP 126
D+T+ R G S ++IA +R S+YEE LT SAG++ N+ +AK+ SD NKPNGQ VLP
Sbjct: 99 DVTQDKRGVG-SAVKIAHMIRKSIYEELNLTASAGISYNKFIAKIASDQNKPNGQCVVLP 157
Query: 127 NDRMAVMTFISSLPIRKIGGIG-KVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADF 185
++ A F+ LP+R+ G+G K E + R + T ++ A S+AD+
Sbjct: 158 DEGEA---FVGQLPVRRFYGVGPKTAEKMAR--LNLQTGADIRACSLAFLAENFGSSADY 212
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL---LYRKLAEIAEMLSADMQKEGL 242
G+ R RKS+ +ERT+ ED + L + IAE + QK G
Sbjct: 213 LYKASRGVDHRPVRPNRIRKSVGAERTY--PEDLSQLESLREAVVSIAEEVWVRSQKNGC 270
Query: 243 RGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVT 299
+G+T TLK+K F+ TRA++L S ++ + LL+ E P+ +RL+G +++
Sbjct: 271 QGKTATLKIKFNDFQQITRAMSLDHLFGSEAELREVLLGLLQKEWPLRRPVRLVGAQLS 329
>gi|294669256|ref|ZP_06734336.1| DNA-directed DNA polymerase [Neisseria elongata subsp. glycolytica
ATCC 29315]
gi|291308888|gb|EFE50131.1| DNA-directed DNA polymerase [Neisseria elongata subsp. glycolytica
ATCC 29315]
Length = 354
Score = 167 bits (424), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 115/308 (37%), Positives = 161/308 (52%), Gaps = 29/308 (9%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFG+ +AM A++LCP+ +FVP +F+ Y S +F ++ SLDEAYL
Sbjct: 49 ARRFGLHSAMSAATAKRLCPQAVFVPPNFSLYRSVSRQIHGIFRRHTDLVEPLSLDEAYL 108
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T + + +IA +R + E GLT SAGVAPN+ LAK+ SD NKPNGQFVLP
Sbjct: 109 DVT-LNHQNIPYASDIARSIRADILAETGLTASAGVAPNKFLAKIASDWNKPNGQFVLPP 167
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHST---AD 184
+ V F++ LP+ KI G+GKVT ++ + G+NT ++ + HS A+
Sbjct: 168 QK--VEAFLTGLPLGKIPGVGKVTRQKMQRL-GMNTVGDLRR----------HSPGELAN 214
Query: 185 FFLSVG-----LGLGSTNTP--QARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADM 237
F G L G N P R R IS+E T AL+ R L +A+ L +
Sbjct: 215 LFGKWGYRLHDLAYGIDNRPVKAERERLQISTEITLPEDLPLALIVRHLPHLADDLWQQL 274
Query: 238 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELP----VSLRL 293
Q R +TLKLKTA F + TR++T + S +L A+ L +P + RL
Sbjct: 275 QNRKTEARGVTLKLKTADFRIITRSLTYSSPLPDSAALLS-AARELAGRIPHASDIDYRL 333
Query: 294 IGLRVTQF 301
IGL V
Sbjct: 334 IGLGVGHL 341
>gi|403343923|gb|EJY71296.1| DNA polymerase IV / kappa [Oxytricha trifallax]
Length = 894
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 100/307 (32%), Positives = 165/307 (53%), Gaps = 17/307 (5%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR +GV + +PGFI ++LC +LIFV D KY +K+ +DP S DE L
Sbjct: 345 AREYGVTSGLPGFIGKRLCKDLIFVKPDKEKYQKEYAEIKKLLQDFDPLLECPSPDEFLL 404
Query: 68 DITEVCRERGISG----IEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF 123
D+T+ + + I + +++R + ++ LT S GVA N+LLAK+CSD NKP+G
Sbjct: 405 DVTQYIKTYNLDDDLGRIFLGDKIRKLILQKTQLTASCGVACNKLLAKICSDFNKPDGLT 464
Query: 124 VLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTA 183
L + + + F+ +LPI+K+ GIGKVTE I+ + GI C++++ K + F+ +
Sbjct: 465 FLQLNAVEISKFMDNLPIKKLQGIGKVTEMIM-NGLGIFNCKDIVVKAREIYINFTENVF 523
Query: 184 DFFLSVGLGLGST-NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGL 242
DF + LG+G + Q + +KS+S +F D LL K+ E+A+ L+ E L
Sbjct: 524 DFLVKSALGIGKNLHDEQTQIKKSLSVAESFKNINDYELLKNKVIELAKELAQKCVAEQL 583
Query: 243 RGRTLTLKLKTASFEVRT---------RAVTLQKYISSSEDILKHASVLLKAELPV--SL 291
GRTLT++ KT + + R + Y + E+++ + L P+ +
Sbjct: 584 LGRTLTMEYKTKNLLTKQKYTSNIQPYRQYSSSIYTDNEEELVNVSLKLFHQIWPIDGGM 643
Query: 292 RLIGLRV 298
R+IGL++
Sbjct: 644 RMIGLKL 650
>gi|296117372|ref|ZP_06835962.1| DNA-directed DNA polymerase [Gluconacetobacter hansenii ATCC 23769]
gi|295976138|gb|EFG82926.1| DNA-directed DNA polymerase [Gluconacetobacter hansenii ATCC 23769]
Length = 397
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 105/295 (35%), Positives = 160/295 (54%), Gaps = 7/295 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFGVR+AMP IAR+ CPEL+FVP F Y S ++F +Y P SLDEAYL
Sbjct: 68 ARRFGVRSAMPSVIARRKCPELVFVPPRFDVYRAVSARIHQIFARYTPLIQPLSLDEAYL 127
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T RG S EIA E+R ++ E GL SAGV+ N+ LAK+ SD KP+G +V+
Sbjct: 128 DVTHPLLPRG-SATEIAREIRATIRAETGLCASAGVSYNKFLAKLASDHRKPDGLYVITP 186
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
A F++ LP+ + GIG T + GI+T ++ + A A F+
Sbjct: 187 RHGA--EFVADLPVERFHGIGPATAARM-HALGIHTGRDLRARTLEDLARHFGKVAAFYH 243
Query: 188 SVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRT 246
V G+ R RKS+ +ERTF + + + + ++ + + ++ L GRT
Sbjct: 244 GVARGVDHRPVESDRPRKSLGTERTFEHDLYEWSDMAAPMTDMCQRVWHGCERRDLTGRT 303
Query: 247 LTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVT 299
+T+K+K F RA TL + +++++++ HA LL+ P +RL+G+ V+
Sbjct: 304 VTIKIKYNDFRQIVRASTLMQPVATAQELSAHALGLLRGCFPPERGVRLLGVVVS 358
>gi|338740349|ref|YP_004677311.1| DNA polymerase IV 2 [Hyphomicrobium sp. MC1]
gi|337760912|emb|CCB66745.1| DNA polymerase IV 2 [Hyphomicrobium sp. MC1]
Length = 361
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 114/304 (37%), Positives = 172/304 (56%), Gaps = 15/304 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FGVR+AM A + CP+LIFVP F Y S R++F +Y P F SLDEAYL
Sbjct: 52 ARAFGVRSAMASTTALRQCPDLIFVPPRFEVYRAISRQIREIFAEYTPLFEPLSLDEAYL 111
Query: 68 DITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP 126
D+TE RG+ + + A E+R+ ++ E GLT SAGV+ N+ LAK+ SD++KPNGQFV+P
Sbjct: 112 DVTENL--RGLPTAADTATEIRSRIFSETGLTASAGVSYNKFLAKLASDMHKPNGQFVIP 169
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM-LQKGSLLCAVFSHSTADF 185
R A FI +L ++K G+G VT L + GI T ++ Q L F S +
Sbjct: 170 PQRGA--EFIEALAVKKFHGVGPVTAEKL-NTLGIYTGADLRAQSLEFLQQHFGKS-GGW 225
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL---LYRKLAEIAEMLSADMQKEGL 242
+ ++ G R RKS SE TF ED+ L + + E+A+ + +K
Sbjct: 226 YYAIARGEDDRPVEPNRPRKSSGSETTFP--EDRFLPAEIEEGVLEMADDVWVWCEKNRS 283
Query: 243 RGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS--LRLIGLRVTQ 300
G T+T+K+K F++ TR+ T+ I++ + + + L+++ PVS +RL+G+ V++
Sbjct: 284 FGATVTVKIKYTDFQIITRSRTVTAPIATHDRLRDISLSLVRSVYPVSKGIRLVGVAVSK 343
Query: 301 FNED 304
F D
Sbjct: 344 FVSD 347
>gi|254525120|ref|ZP_05137175.1| DNA polymerase IV [Stenotrophomonas sp. SKA14]
gi|219722711|gb|EED41236.1| DNA polymerase IV [Stenotrophomonas sp. SKA14]
Length = 364
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 118/306 (38%), Positives = 165/306 (53%), Gaps = 21/306 (6%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FGVR+AMP A +LCP+ IFVP DF +Y S R++F ++ SLDEAYL
Sbjct: 50 ARVFGVRSAMPALRAERLCPDAIFVPPDFARYKAVSRQVREIFLRHTDLVEPLSLDEAYL 109
Query: 68 DITEVCRERGISGIE----IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF 123
D+TE SGIE IA +R + EE LT SAG+APN+ LAK+ SD KP+GQF
Sbjct: 110 DVTEPK-----SGIELATDIARTIREQIREETQLTASAGIAPNKFLAKIASDWRKPDGQF 164
Query: 124 VLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTA 183
V+P R V F++ LP+ ++ G+GKV E L GI TC ++ Q + S
Sbjct: 165 VIPPQR--VEAFLTPLPVNRVPGVGKVMEGKL-AARGIVTCGDLRQWALIDLEEAFGSFG 221
Query: 184 DFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEG 241
+ G+ + +SISSE TF+ ED L L + ++AE +K
Sbjct: 222 RSLYNRARGVDERPVEADQQVQSISSEDTFA--EDLLLEDLSEAIVQLAEKTWNATRKTE 279
Query: 242 LRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKA--ELPVS--LRLIGLR 297
G T+ LKLKTA F + TR+ T + S E+ L+ ++ L+A +LP RL+G+
Sbjct: 280 RVGHTVVLKLKTAQFRILTRSFTPDRPPDSMEE-LRDIALALRARVDLPAETRYRLVGVG 338
Query: 298 VTQFNE 303
+ F E
Sbjct: 339 LGGFRE 344
>gi|332667689|ref|YP_004450477.1| DNA polymerase IV [Haliscomenobacter hydrossis DSM 1100]
gi|332336503|gb|AEE53604.1| DNA polymerase IV [Haliscomenobacter hydrossis DSM 1100]
Length = 358
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 107/302 (35%), Positives = 169/302 (55%), Gaps = 11/302 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++GVR+AM G +AR+LCPE++FV + F Y S R +F Y SLDEAYL
Sbjct: 47 ARKYGVRSAMSGGMARRLCPEIVFVRSRFDVYRSVSYQIRDIFLDYTDLVEPLSLDEAYL 106
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLP 126
D+TE ++ S IA+E+R + E GLT SAGV+ N+ LAK+ SDINKPNG + + P
Sbjct: 107 DVTE-NKKNMTSATLIAQEIRKRIEAETGLTASAGVSFNKFLAKIASDINKPNGIKVITP 165
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFF 186
+ +A F+ L + K G+GKVT + ++ GI T ++ Q+ F ++
Sbjct: 166 EEAIA---FLEQLAVEKFHGVGKVTARKMHNM-GIYTGGDLKQRSEADLVRFFGKAGRYY 221
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
+ + R RKSI +ERTF+ D ++ KL ++AE + M K GR
Sbjct: 222 YRIVRAEDNREVNPHRIRKSIGAERTFNEDVSDPEIMKNKLTDLAEGVHRYMDKTQNFGR 281
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKA---ELPVSLRLIGLRVTQFN 302
T+TLKLK+ F++ TR+ + I + +++++ LL E P+ +RL+G+ ++
Sbjct: 282 TVTLKLKSPDFKILTRSRSFASEIRNLDELIRIVHDLLDQHIEEAPI-VRLLGVTLSNLE 340
Query: 303 ED 304
++
Sbjct: 341 KE 342
>gi|225075588|ref|ZP_03718787.1| hypothetical protein NEIFLAOT_00602 [Neisseria flavescens
NRL30031/H210]
gi|224953010|gb|EEG34219.1| hypothetical protein NEIFLAOT_00602 [Neisseria flavescens
NRL30031/H210]
Length = 352
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 108/303 (35%), Positives = 162/303 (53%), Gaps = 19/303 (6%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG+ +AM A++LCP+ +FVP F Y S VF +Y SLDEAYL
Sbjct: 49 ARKFGLHSAMSVATAKRLCPQAVFVPPHFDLYRQVSAQIHAVFRRYTDLIEPLSLDEAYL 108
Query: 68 DITEVCRERGISGI----EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF 123
D+T R I E+A+ +R ++EE GLT SAG+APN+ LAK+ SD KPNGQF
Sbjct: 109 DVT-----RNFENIPYASEVAKRIRAEIFEETGLTASAGIAPNKFLAKIASDWRKPNGQF 163
Query: 124 VLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHS 181
VLP + +M F+ SLP+ KI G+GKVT + + G+ T ++ ++G LL +
Sbjct: 164 VLPPQK--IMAFLESLPLGKIPGVGKVTLKKM-NALGMQTAGDLRRFERGELLNHFGRYG 220
Query: 182 TADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEG 241
+ L+ G+ + R + IS+E T A L +AE L ++++
Sbjct: 221 YRLYDLARGIDERPVKAERERLQ--ISTEITLPEDLSLAQASSHLPHLAEDLWRQIERKN 278
Query: 242 LRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV---SLRLIGLRV 298
+ + +TLKLKT F + TR++T + S +L+ A LL+ P + RLIG+ V
Sbjct: 279 VEAKGVTLKLKTHDFRIITRSLTYSSVLPDSASLLQAAHTLLQRIPPQREDAFRLIGIGV 338
Query: 299 TQF 301
+
Sbjct: 339 SHL 341
>gi|261334854|emb|CBH17848.1| DNA polymerase IV, putative [Trypanosoma brucei gambiense DAL972]
Length = 570
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 103/307 (33%), Positives = 161/307 (52%), Gaps = 17/307 (5%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR GVR MPG+I K+CP L+ +P DF Y S+ R++ +YDPN+++ LDE L
Sbjct: 175 ARGCGVRPGMPGYIGLKICPNLLILPPDFDAYNEESNTVRRIVAEYDPNYISFGLDELTL 234
Query: 68 DITE-VCRERGISGIE-IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL 125
+++ + R G E +A ELR V+ E LT SAG+ P LAK+ S+INKPNGQ L
Sbjct: 235 EVSAYIERFEGTKTAEDVASELRVRVFGETKLTASAGIGPTAALAKIASNINKPNGQHDL 294
Query: 126 P-NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTAD 184
+ R VMT++ L +R + GIGK E +L+ GI T ++ + LC +F+ T
Sbjct: 295 NLHTRQDVMTYVRDLGLRSVPGIGKAMEALLKG-LGITTLSDIYNRRVELCYIFTEKTYR 353
Query: 185 FFLSVGLGL-----------GSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEML 233
F L +G+ GS + RKS+ SERTF + + K L + I
Sbjct: 354 FLLGASIGIMQWPDACNIPGGSVDDGTGVGRKSVGSERTFKILQSKEELQEIVDFIFNSS 413
Query: 234 SADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL--KAELPVSL 291
+++K L R ++L+++ A++ R + L ++ S + + LL A +
Sbjct: 414 YDELKKHELMCRQVSLRIRWATYRSRQYTMNLAQHSDDSATLRRAVDGLLLPHAAKYSDM 473
Query: 292 RLIGLRV 298
L+G+R+
Sbjct: 474 SLLGMRL 480
>gi|376296835|ref|YP_005168065.1| DNA-directed DNA polymerase [Desulfovibrio desulfuricans ND132]
gi|323459397|gb|EGB15262.1| DNA-directed DNA polymerase [Desulfovibrio desulfuricans ND132]
Length = 386
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 114/312 (36%), Positives = 168/312 (53%), Gaps = 15/312 (4%)
Query: 9 RRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLD 68
RR+GV +AM ARKLCPE+I VP +Y S L ++ P AS+DEAYLD
Sbjct: 40 RRYGVHSAMSVVKARKLCPEIILVPGRMGRYKEVSHLVMDALREFSPTVEQASVDEAYLD 99
Query: 69 ITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPND 128
T + R G EI ++ V E GLTCS G AP R LAK+ SD++KP+G F++ ++
Sbjct: 100 GTGLERLFGPVD-EIGRRIKARVKEATGLTCSVGAAPVRFLAKIASDMDKPDGMFIVRHE 158
Query: 129 RMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQK-GSLLCAVFSHSTADFFL 187
+A F+ +LP+ KI G+G +L+ G+ TC ++L K G A +
Sbjct: 159 EVA--EFLQTLPVGKIPGVGAKLLEVLKR-LGVRTCGDILLKPGEYWEERLGKYGAALY- 214
Query: 188 SVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRT 246
G+ T KS S+E TF T D+ALL + L +E + D+++ G +GRT
Sbjct: 215 DRARGIDPTPVTPCEAAKSCSAENTFREDTTDRALLRKWLLAQSERVGEDLRRHGYKGRT 274
Query: 247 LTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELPVSLRLIGLRVTQFNEDK 305
+TLK+K A F TR+ +L+ ++ I + A LL + +LP ++RLIG+ V+ F
Sbjct: 275 VTLKVKYADFSQITRSRSLEARTDNTAVIFETACGLLEQVKLPRAVRLIGVGVSNFG--- 331
Query: 306 VRAPSDPTQKTL 317
+ P Q TL
Sbjct: 332 ----ARPRQVTL 339
>gi|383451945|ref|YP_005358666.1| DNA polymerase IV, damage-inducible protein DinB [Flavobacterium
indicum GPTSA100-9]
gi|380503567|emb|CCG54609.1| DNA polymerase IV, damage-inducible protein DinB [Flavobacterium
indicum GPTSA100-9]
Length = 359
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 111/301 (36%), Positives = 169/301 (56%), Gaps = 8/301 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++GVR+AM G A +LCPEL FV F +Y S R +F +Y SLDEAYL
Sbjct: 52 ARKYGVRSAMSGVQAARLCPELTFVRPRFDRYKEISKQIRAIFLEYTDLVEPLSLDEAYL 111
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+TE ++ S IA+E+R ++E+ GLT SAG++ N+ +AK+ SD NKPNGQ +
Sbjct: 112 DVTE-NKKGNPSATLIAKEIRQKIFEKTGLTASAGISVNKFVAKIASDYNKPNGQKTVNP 170
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFF 186
D V FI L ++K GIGKVT + + GI T ++ K L F +S F+
Sbjct: 171 DE--VEAFIEVLDVKKFYGIGKVTAEKMYQL-GIYTGLDLKNKTLEYLEQHFGNSGQAFY 227
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLRGR 245
++ G+ + R KSI +ERTF+ + + +L IA + ++K + G+
Sbjct: 228 -NLSRGISYSQVKPNRQMKSIGAERTFNENLSSEIYMEERLENIASEIERRIKKYKISGK 286
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFNED 304
T+TLK+K + F +TR+ TL +I+ I++ A LL E L S+RL+G+ + N +
Sbjct: 287 TITLKIKYSDFTQQTRSKTLPYFIADKSLIMETAKELLYQERLKDSVRLLGISLNNLNTN 346
Query: 305 K 305
+
Sbjct: 347 Q 347
>gi|406892189|gb|EKD37611.1| hypothetical protein ACD_75C01070G0002 [uncultured bacterium]
Length = 370
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 112/301 (37%), Positives = 163/301 (54%), Gaps = 7/301 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFG+ +AMP A +LCP IFV ++Y S ++F +Y P SLDEAYL
Sbjct: 51 ARRFGIHSAMPCAKAARLCPNAIFVRPRMSRYKEISVKIMEIFHQYTPLVEPLSLDEAYL 110
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T V S +AE++R ++ E LT SAGV+ N+ LAKV SDINKPNG +P
Sbjct: 111 DVT-VNNSNNPSATLLAEKIRRHIFRELQLTASAGVSFNKFLAKVASDINKPNGITTIPP 169
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
D+ + F++SLPIRK G+GK TE + + GI T E+ Q FF
Sbjct: 170 DK--ALEFLASLPIRKFHGVGKATERKMHQL-GITTGYELRQWREDQLIRHFGKYGSFFH 226
Query: 188 SVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRT 246
+ G+ + R RKSI E T + T+D + LA++AE L + K + G
Sbjct: 227 DIVRGIDNRPVEPQRIRKSIGCETTLATDTDDIGTINAILADLAEELDHSLGKRRIGGYN 286
Query: 247 LTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS--LRLIGLRVTQFNED 304
LTLK++ F +R++T++ + +S DIL LL A S +RL+GL +++ ++
Sbjct: 287 LTLKVRYLDFITISRSITVKTPLFTSADILPLLPTLLHATAAGSRKIRLLGLSLSKLVDE 346
Query: 305 K 305
K
Sbjct: 347 K 347
>gi|389872202|ref|YP_006379621.1| DNA polymerase IV [Advenella kashmirensis WT001]
gi|388537451|gb|AFK62639.1| DNA polymerase IV [Advenella kashmirensis WT001]
Length = 354
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 115/307 (37%), Positives = 170/307 (55%), Gaps = 22/307 (7%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG+R+AM AR+LCP I++ +FT Y S R +F +Y SLDEAYL
Sbjct: 48 ARKFGLRSAMSVRRARELCPHAIYIAPNFTLYREVSRQVRGIFQQYTDRIEPLSLDEAYL 107
Query: 68 DITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP 126
D+T +GI S E+A ++ ++ E LT SAGVAPN+ LAK+ SD NKPNG V+P
Sbjct: 108 DVT--VNHKGIASATEVARRIQEDIFRETSLTASAGVAPNKFLAKIASDWNKPNGICVVP 165
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF-SHSTADF 185
R VM+F+ LP+ KI G+G+VT + + L+ L F ++ F
Sbjct: 166 PSR--VMSFLQDLPLEKIPGVGRVTLAKFHRLQMKTIADLRLRSEWELTHHFGAYGHRLF 223
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLR-- 243
L+ G+ L +T Q + IS+E TF D+ L Y +L + + ++ + ++ LR
Sbjct: 224 ELARGIDLREVDTNQQ--SQQISTETTF----DRDLPYLQLQDPLDAIARKLWEQVLRKR 277
Query: 244 --GRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS-----LRLIGL 296
GRT+TLKLK+ASF + TR+ T + S +++ +HA+ L A L RLIGL
Sbjct: 278 KFGRTVTLKLKSASFRIVTRSQTYSNPLYSVDEV-RHAAATLLARLEADKRHTLYRLIGL 336
Query: 297 RVTQFNE 303
++ F E
Sbjct: 337 GISAFAE 343
>gi|296283336|ref|ZP_06861334.1| DNA polymerase IV [Citromicrobium bathyomarinum JL354]
Length = 401
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 109/302 (36%), Positives = 165/302 (54%), Gaps = 11/302 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGV++AMP A++LCP+LIFV + F Y SD R +F + SLDEAYL
Sbjct: 85 ARKFGVKSAMPSVTAKRLCPDLIFVKSRFDAYREASDQIRAIFRHHTDLVEPLSLDEAYL 144
Query: 68 DITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL- 125
D+T + GI S ++A+ +R + + LT SAGV+ N+ LAK+ SD NKP+G V+
Sbjct: 145 DVT--VNKLGIASATQVAQMIRQEIRAKTRLTASAGVSYNKFLAKLASDQNKPDGMCVIR 202
Query: 126 PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADF 185
P + A F+ +LPIR+ G+G E + + GI T ++ K + A S D+
Sbjct: 203 PGEGAA---FVQTLPIRRFHGVGPRGEEKMARL-GIATGADLAAKDAAWLAQHFGSFGDY 258
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYR-KLAEIAEMLSADMQKEGLRG 244
G+ R RKS+ ERTFSV +A R L EI +++ +++ RG
Sbjct: 259 LYRAARGIDDRPVRANRIRKSVGGERTFSVDRHEAEELRTTLDEIVDIVWERIERAQARG 318
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDI--LKHASVLLKAELPVSLRLIGLRVTQFN 302
RT+TLKLK F++ TRA +L + ++ + + HA + LP +RL+GL ++
Sbjct: 319 RTVTLKLKYNDFQLMTRARSLPRNVADKAEFAAIGHAILDELLPLPRPIRLMGLTLSNLE 378
Query: 303 ED 304
D
Sbjct: 379 RD 380
>gi|424666909|ref|ZP_18103934.1| DNA polymerase IV [Stenotrophomonas maltophilia Ab55555]
gi|401069578|gb|EJP78099.1| DNA polymerase IV [Stenotrophomonas maltophilia Ab55555]
Length = 364
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 117/306 (38%), Positives = 164/306 (53%), Gaps = 21/306 (6%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FGVR+AMP A +LCP+ IFVP DF +Y S R +F ++ SLDEAYL
Sbjct: 50 ARVFGVRSAMPAVRAERLCPDAIFVPPDFARYKAVSQQVRAIFLRHTDLVEPLSLDEAYL 109
Query: 68 DITEVCRERGISGIE----IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF 123
D+TE SGIE IA +R + EE LT SAG+APN+ LAK+ SD KP+GQF
Sbjct: 110 DVTEPK-----SGIELATDIARTIRAQIREETNLTASAGIAPNKFLAKIASDWRKPDGQF 164
Query: 124 VLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTA 183
V+P R V F++ LP+ ++ G+GKV E L GI TC ++ Q + S
Sbjct: 165 VIPPQR--VDAFLAPLPVNRVPGVGKVMEGKL-AARGIATCGDLRQWALIDLEEAFGSFG 221
Query: 184 DFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEG 241
+ G+ + +SISSE TF+ ED L L + ++A +K
Sbjct: 222 RSLYNRARGIDERPVEPDQQVQSISSEDTFA--EDLLLEDLTEAIVQLAGKTWNATRKTE 279
Query: 242 LRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKA--ELPVS--LRLIGLR 297
G T+ LKLKTA F + TR+ T ++ S E+ L+ ++ L+A +LP RL+G+
Sbjct: 280 RIGHTVVLKLKTAQFRILTRSFTPERPPESMEE-LRDIALALRARVDLPAETRYRLVGVG 338
Query: 298 VTQFNE 303
+ F E
Sbjct: 339 LGGFRE 344
>gi|302409854|ref|XP_003002761.1| DNA polymerase kappa [Verticillium albo-atrum VaMs.102]
gi|261358794|gb|EEY21222.1| DNA polymerase kappa [Verticillium albo-atrum VaMs.102]
Length = 407
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 135/441 (30%), Positives = 211/441 (47%), Gaps = 64/441 (14%)
Query: 87 LRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGG 146
+R ++E+ +T SAG+A N LAK+CS++NKPNGQ++LP+DR ++M F+ SLP RK+ G
Sbjct: 1 MRREIHEKTKITVSAGIAANAKLAKICSNMNKPNGQYLLPSDRASIMKFMGSLPPRKVNG 60
Query: 147 IGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTN-TPQARF-R 204
+G+V E L ++ G+ TC E+ + L +F +F + LGLG T P + R
Sbjct: 61 VGRVLERQLTEI-GVTTCGEIYEYRQYLNQLFGQKAFEFLIHCYLGLGRTKIQPAEEYER 119
Query: 205 KSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVT 264
KS+ +E TF D L KL A+ L DM++ ++GRTL LK+K ++EV TR V
Sbjct: 120 KSVGTESTFHDMSDPTQLTEKLRWTADELEKDMKRAEVKGRTLVLKIKLHTYEVFTRQVV 179
Query: 265 LQKYISSSEDILKHASVL---LKAELP-VSLRLIGLRVTQFNEDKVRAPSDPTQKTLTNF 320
QK I ++D+ H+ + L+ E+P + LRL+GLR+T K T+ F
Sbjct: 180 TQKSICLADDLFNHSLPILTKLQQEIPDMKLRLMGLRMTHLVSTK-------KPDTMAFF 232
Query: 321 MTSGHASKKIVGDQNSLGSDINDDCLIDDKETSVSLDVSETNNYEFGDPVCDNSLPDLND 380
G S+K D + GS D D E + V++ + +E
Sbjct: 233 ---GFRSRK---DNAATGSPSKSDA---DGEKLNTQGVTDDDGWE--------------- 268
Query: 381 ENCSFSNKISEVEKIHENEVSQLLEGNSLVLRQEEGSCCDGVEEVDKDITPDNKVGTSSN 440
+ E E +E +L E + + E S K+I P N + +
Sbjct: 269 -------QWPEEELFQLDE--ELQEQANTAAEEVEDSVSSPFRRHGKEILP-NPIDEDAP 318
Query: 441 QKDQFIWLDDYKCSLCGTEMPPSFIEER--QEHSDFHLAERLQKEESGSDLRILTHRERC 498
D +W C +CG P +ER EH D L+ + +E D+ L C
Sbjct: 319 VSDAELW----DCPICGRPQAP---DERTFNEHIDLCLSRQTIREAVQEDVAPLA--AAC 369
Query: 499 VRT-----QRDHIASHRKRKK 514
+R+ +R + + RKR +
Sbjct: 370 IRSSTPEPKRTKLGNDRKRGR 390
>gi|71756019|ref|XP_828924.1| DNA polymerase kappa [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|70834310|gb|EAN79812.1| DNA polymerase kappa, putative [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
Length = 570
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 103/307 (33%), Positives = 161/307 (52%), Gaps = 17/307 (5%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR GVR MPG+I K+CP L+ +P DF Y S+ R++ +YDPN+++ LDE L
Sbjct: 175 ARGCGVRPGMPGYIGLKICPNLLILPPDFDTYNEESNTVRRIVAEYDPNYISFGLDELTL 234
Query: 68 DITE-VCRERGISGIE-IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL 125
+++ + R G E +A ELR V+ E LT SAG+ P LAK+ S+INKPNGQ L
Sbjct: 235 EVSAYIERFEGTKTAEDVASELRVRVFGETKLTASAGIGPTAALAKIASNINKPNGQHDL 294
Query: 126 P-NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTAD 184
+ R VMT++ L +R + GIGK E +L+ GI T ++ + LC +F+ T
Sbjct: 295 NLHTRGDVMTYVRDLGLRSVPGIGKAMEALLKG-LGITTLSDIYNRRVELCYIFTEKTYR 353
Query: 185 FFLSVGLGL-----------GSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEML 233
F L +G+ GS + RKS+ SERTF + + K L + I
Sbjct: 354 FLLGASIGIMQWPDACNIPGGSVDDGTGVGRKSVGSERTFKILQSKEELQEIVDFIFNSS 413
Query: 234 SADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL--KAELPVSL 291
+++K L R ++L+++ A++ R + L ++ S + + LL A +
Sbjct: 414 YDELKKHELMCRQVSLRIRWATYRSRQYTMNLAQHSDDSATLRRAVDGLLLPHAAKYSDM 473
Query: 292 RLIGLRV 298
L+G+R+
Sbjct: 474 SLLGMRL 480
>gi|398382571|ref|ZP_10540656.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Sphingobium sp. AP49]
gi|397726677|gb|EJK87110.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Sphingobium sp. AP49]
Length = 364
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 117/299 (39%), Positives = 174/299 (58%), Gaps = 17/299 (5%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR+AMPG AR+LCP+L+FV F Y S R +F ++ SLDEAYL
Sbjct: 54 ARKFGVRSAMPGARARRLCPDLLFVKPRFEVYRAVSAQIRAIFGRFTDMVQPLSLDEAYL 113
Query: 68 DITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL- 125
D+T+ + GI S +A+E+R + EE GLT SAGV+ N+L+AK+ SD NKP+G V+
Sbjct: 114 DVTQ--NKPGIASATLVAQEIRRLIREETGLTASAGVSYNKLIAKLASDQNKPDGLCVVR 171
Query: 126 PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTAD 184
P + A F++ +P+R+I GIG VT + + GI T ++ + S L A F S+A
Sbjct: 172 PAEGAA---FMAGMPVRRIHGIGPVTAERMHKL-GIQTGADLRDRDLSFLQAQFG-SSAL 226
Query: 185 FFLSVGLGLGSTNTPQARFRKSISSERTF---SVTEDKALLYRKLAEIAEMLSADMQKEG 241
F+ G + + RKS+S E TF VTE+ L +++ IA+ L + K
Sbjct: 227 FYYRAARGEDDRPVHERQERKSVSVEDTFLEDLVTEEA--LVQEINRIADNLWNRIDKAQ 284
Query: 242 LRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSL--RLIGLRV 298
GRT+ LK+K A F + TR+ + + S E +++ LL+A+LP+ + RL+GL V
Sbjct: 285 AYGRTVVLKVKFADFRIITRSRSFTAPVRSLEQLMETGRGLLRAQLPLRIGARLLGLGV 343
>gi|424877132|ref|ZP_18300791.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Rhizobium leguminosarum bv. viciae WSM1455]
gi|393164735|gb|EJC64788.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Rhizobium leguminosarum bv. viciae WSM1455]
Length = 375
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 106/307 (34%), Positives = 167/307 (54%), Gaps = 10/307 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FGV +AMP A++ CP+LIFVP F Y S R++F +Y P SLDEAYL
Sbjct: 68 ARVFGVHSAMPSVTAKRKCPDLIFVPPRFDVYKAVSQQIREIFAEYTPLIEPLSLDEAYL 127
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-P 126
D+TE + ++ EIA E+R + E GL SAG++ N+ LAK+ SD+NKPNGQ V+ P
Sbjct: 128 DVTENLKGMEVA-TEIALEIRAKIKEVTGLNASAGISYNKFLAKMASDLNKPNGQAVITP 186
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFF 186
+ F+ +LP++K G+G T ++ GI T ++ K + +F
Sbjct: 187 KNGPG---FVEALPVKKFHGVGPATAERMKR-HGIETGLDLKSKSLAFLQQNFGKSGPYF 242
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTF-SVTEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
+ G+ R RKS+ +E TF +D L +L +AE + + + G+
Sbjct: 243 YGIARGVDERRVRPDRIRKSVGAEDTFVEDIDDLDLAKAELRPLAEKVWRYCEAHDITGK 302
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFN- 302
T+T+K+K + F TR+ T+ +S + +L++A LL + P S+RL+G+ ++ N
Sbjct: 303 TVTVKIKYSDFSQATRSRTMAGSVSDVDMVLENAETLLASVFPFKRSVRLLGITLSSLNT 362
Query: 303 EDKVRAP 309
E+ +AP
Sbjct: 363 EESEQAP 369
>gi|294948988|ref|XP_002785996.1| DNA polymerase IV, putative [Perkinsus marinus ATCC 50983]
gi|239900104|gb|EER17792.1| DNA polymerase IV, putative [Perkinsus marinus ATCC 50983]
Length = 585
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 126/366 (34%), Positives = 188/366 (51%), Gaps = 51/366 (13%)
Query: 8 ARRFGVRAAMPGFIARKLC-----------PE---------LIFVPTDFTKYTYYSDLTR 47
AR++GVRAAMPGFIAR+LC P L F P D +Y S + +
Sbjct: 55 ARKYGVRAAMPGFIARELCRRQGVELRLEGPSGVVVMMEGGLRFKPVDMPRYQAASKIFK 114
Query: 48 KVFCKYDPNFMAASLDEAYLDITEVCRERG-----ISGIEIAEELRTSVYEE-----AGL 97
Y P M SLDEAY+DIT E IS +E A L + + EE +GL
Sbjct: 115 DTVSLYGPMKML-SLDEAYIDITAKVAEAAMVDESISEVEAASLLVSRMREEVCEKSSGL 173
Query: 98 TCSAGVAPNRL-LAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILR 156
TCSAG+A LAK+ SD+NKPNGQF++P ++ ++ S+PIRK+ G+G+V+E L
Sbjct: 174 TCSAGIARGCFRLAKMASDVNKPNGQFMVPTTTQGMLEWLHSMPIRKLHGVGRVSERELS 233
Query: 157 DVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARFR---KSISSERTF 213
GI+ +++ K + L S S + + +G+ A KSIS ER+
Sbjct: 234 AGLGIHKVGDIIIKAAELLHAMSSSGGHWLIDAAMGVTDMEDVTAAAESGPKSISQERSL 293
Query: 214 SVTEDKALLYRKLAEIAEMLSADM-----QKEGLRGRTLTLKLKTASFEVRTRAVTLQKY 268
S + + Y L E+ E L + + +KE GR +T+KLKT ++V+ ++ TL++
Sbjct: 294 STAKSGSAAY--LHEVLEELCSQVMELCAEKEQY-GRCVTVKLKTFEWDVKQKSNTLKRE 350
Query: 269 ISSSEDILKHASVLLK---AELPVSLRLIGLRVTQFNEDKVRAPSDPTQKTLTNFMTSGH 325
+ S + + AS L+ A L +RL+G+RV+ F + P Q TL +F+ +
Sbjct: 351 VRSGRLLYEAASELMSTALATLKKPIRLLGVRVSSF---QTAVPQG--QSTLGDFLAAHK 405
Query: 326 ASKKIV 331
AS V
Sbjct: 406 ASSSRV 411
>gi|383317865|ref|YP_005378707.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Frateuria aurantia DSM 6220]
gi|379044969|gb|AFC87025.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Frateuria aurantia DSM 6220]
Length = 370
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 112/306 (36%), Positives = 168/306 (54%), Gaps = 22/306 (7%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFG+ +AMP A +LCP +FVP DF +Y S +++F ++ SLDEAYL
Sbjct: 48 ARRFGIHSAMPAMRAERLCPTAVFVPPDFARYKRVSGQVQEIFNRHTDLVEPLSLDEAYL 107
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T S ++A +R +++EE GLT SAGVAPN+ LAK+ SD NKP+G +V+
Sbjct: 108 DVTTNTLALP-SATQVARMIRAAIHEETGLTASAGVAPNKFLAKIASDWNKPDGLYVIRP 166
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
R V+ F+S LP+ K+ G+GKV E LRD GI +++ ++ S + L
Sbjct: 167 SR--VLEFLSGLPVGKLPGVGKVMESRLRD-LGIQRVDQLRER---TVDQLERSFGRWGL 220
Query: 188 ---SVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL-----LYRKLAEIAEMLSADMQK 239
+ +G+ + R RK IS+E TF +D+ L R+LAE A S +++
Sbjct: 221 RLHQLSMGIDESAVMPHRVRKQISTEDTFP--DDRRLDQLDTPVRQLAERA--WSTAVRQ 276
Query: 240 EGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELPVS--LRLIGL 296
T+ LKLKT F +R+ TL S+ DI++ A +L+ + LP RL+G+
Sbjct: 277 AMSHPHTIVLKLKTHDFINLSRSQTLPSPPRSAADIIEVAKMLMNRVTLPADTRYRLVGI 336
Query: 297 RVTQFN 302
+T F
Sbjct: 337 GLTGFK 342
>gi|456737807|gb|EMF62484.1| DNA polymerase IV [Stenotrophomonas maltophilia EPM1]
Length = 364
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 117/306 (38%), Positives = 164/306 (53%), Gaps = 21/306 (6%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FGVR+AMP A +LCP+ IFVP DF +Y S R +F ++ SLDEAYL
Sbjct: 50 ARVFGVRSAMPAVRAERLCPDAIFVPPDFARYKAVSQQVRAIFLRHTDLVEPLSLDEAYL 109
Query: 68 DITEVCRERGISGIE----IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF 123
D+TE SGIE IA +R + EE LT SAG+APN+ LAK+ SD KP+GQF
Sbjct: 110 DVTEPK-----SGIELATDIARTIRAQIREETNLTASAGIAPNKFLAKIASDWRKPDGQF 164
Query: 124 VLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTA 183
V+P R V F++ LP+ ++ G+GKV E L GI TC ++ Q + S
Sbjct: 165 VIPPQR--VDAFLAPLPVNRVPGVGKVMEGKL-AARGIVTCGDLRQWALIDLEEAFGSFG 221
Query: 184 DFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEG 241
+ G+ + +SISSE TF+ ED L L + ++A +K
Sbjct: 222 RSLYNRARGIDERPVEPDQQVQSISSEDTFA--EDLLLEDLTEAIVQLAGKTWNATRKTE 279
Query: 242 LRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKA--ELPVS--LRLIGLR 297
G T+ LKLKTA F + TR+ T ++ S E+ L+ ++ L+A +LP RL+G+
Sbjct: 280 RIGHTVVLKLKTAQFRILTRSFTPERPPESMEE-LRDIALALRARVDLPAETRYRLVGVG 338
Query: 298 VTQFNE 303
+ F E
Sbjct: 339 LGGFRE 344
>gi|71756025|ref|XP_828927.1| DNA polymerase kappa [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|70834313|gb|EAN79815.1| DNA polymerase kappa, putative [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
Length = 571
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 103/306 (33%), Positives = 161/306 (52%), Gaps = 17/306 (5%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR G+R+ MPG+I K+CP L+ +P DF Y S+ R++ +YDPNF + LDE L
Sbjct: 175 ARECGIRSGMPGYIGLKVCPNLLILPPDFDAYNEESNTVRRIVAEYDPNFTSLGLDELTL 234
Query: 68 DITE-VCRERGISGIE-IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL 125
+++ + R G E +A ELR V+ E LT SAG+ P LAK+ S+INKPNGQ L
Sbjct: 235 EVSAYIERFEGTKTAEDVASELRVRVFGETKLTASAGIGPTAALAKIASNINKPNGQHDL 294
Query: 126 P-NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTAD 184
+ R VMT++ L +R + GIGKVTE +L+ + GI T ++ + LC +F+ T
Sbjct: 295 NLHTREDVMTYVRDLGLRSVPGIGKVTEALLKGL-GITTLSDIYNRRVELCYIFTEKTYC 353
Query: 185 FFLSVGLGL-----------GSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEML 233
F L +G+ S + RKS+ ERTF ++K L + + +
Sbjct: 354 FLLGASIGIMQWPDMCSILGASIDDGTGVGRKSVGCERTFKTFQNKEELQEMVDFLVDYS 413
Query: 234 SADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL--KAELPVSL 291
+++K L R ++LK++ S+ + L +Y S + + L+ A +
Sbjct: 414 YDELKKHELMCRQVSLKIRWNSYRHQQYTKNLTQYSDDSATLRRAVDELMLPHAAKYSEM 473
Query: 292 RLIGLR 297
RL+G+R
Sbjct: 474 RLLGVR 479
>gi|340028073|ref|ZP_08664136.1| DNA-directed DNA polymerase [Paracoccus sp. TRP]
Length = 363
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 111/306 (36%), Positives = 162/306 (52%), Gaps = 10/306 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFGVR+AMP A +LCP+L+FV F Y S R +F +Y P SLDEAYL
Sbjct: 54 ARRFGVRSAMPSMRAMRLCPDLVFVKPRFDVYRAVSQQVRDIFFEYTPLVEPLSLDEAYL 113
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T+ + R + IA+E+R + E GLT SAGV+ N+ LAK+ SD KP+G FV+P
Sbjct: 114 DLTDYLQGR--TATRIAQEIRARIREATGLTASAGVSYNKFLAKLASDQRKPDGLFVIPP 171
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEML-QKGSLLCAVFSHSTADFF 186
+ A F+ LPI + GIG T + + GI T ++ Q L A F S ++
Sbjct: 172 E--AGPEFVHGLPIGRFHGIGPATAARM-ESHGILTGADLARQTLEFLTARFGKS-GTYY 227
Query: 187 LSVGLGLGSTNTPQARFRKSISSERT-FSVTEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
++ G+ + R RKSI +E T F D + L +A+ + G GR
Sbjct: 228 WNIARGIDTREVKPNRIRKSIGAENTYFEDLRDLPAAHEALEVLADKVWRHATNAGRVGR 287
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL--PVSLRLIGLRVTQFNE 303
T+TLK+K F TRA +L + + S +++L A LL P +RL+G+ ++ +E
Sbjct: 288 TVTLKVKYGDFRQITRARSLPRPVESRDEMLGMARDLLGPVFADPHGVRLLGITLSGLDE 347
Query: 304 DKVRAP 309
+ P
Sbjct: 348 ARQDEP 353
>gi|194364233|ref|YP_002026843.1| DNA polymerase IV [Stenotrophomonas maltophilia R551-3]
gi|226738241|sp|B4SIF5.1|DPO4_STRM5 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|194347037|gb|ACF50160.1| DNA-directed DNA polymerase [Stenotrophomonas maltophilia R551-3]
Length = 356
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 116/306 (37%), Positives = 166/306 (54%), Gaps = 21/306 (6%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FGVR+AMP A +LCP+ IFVP DF +Y S R++F ++ SLDEAYL
Sbjct: 50 ARVFGVRSAMPAVRAERLCPDAIFVPPDFARYKAVSQQVREIFLRHTDLVEPLSLDEAYL 109
Query: 68 DITEVCRERGISGIE----IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF 123
D+TE SG+E IA +R + EE LT SAG+APN+ LAK+ SD KP+GQF
Sbjct: 110 DVTEPK-----SGMELATDIARTIRAQIREETQLTASAGIAPNKFLAKIASDWRKPDGQF 164
Query: 124 VLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTA 183
V+P R V F+ LP+ ++ G+GKV E L GI TC ++ Q + S
Sbjct: 165 VIPPQR--VDAFLLPLPVNRVPGVGKVMEGKL-AARGIVTCGDLRQWALIDLEEAFGSFG 221
Query: 184 DFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEG 241
+ G+ + +SISSE TF+ ED L L + ++AE +K
Sbjct: 222 RSLYNRARGVDERPVEPDQQVQSISSEDTFA--EDLPLEDLGEAIVQLAEKTWNATRKTE 279
Query: 242 LRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKA--ELPVS--LRLIGLR 297
G T+ LKLKTA F + TR+ T ++ S E+ L+ ++ L+A +LP RL+G+
Sbjct: 280 RVGHTVVLKLKTAQFRILTRSFTPERPPESMEE-LRDIALALRARVDLPADTRYRLVGVG 338
Query: 298 VTQFNE 303
++ F +
Sbjct: 339 LSGFRD 344
>gi|386716938|ref|YP_006183264.1| DNA polymerase IV [Stenotrophomonas maltophilia D457]
gi|384076500|emb|CCH11081.1| DNA polymerase IV [Stenotrophomonas maltophilia D457]
Length = 364
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 121/309 (39%), Positives = 170/309 (55%), Gaps = 27/309 (8%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FGVR+AMP A +LCP+ IFVP DF +Y S R++F ++ SLDEAYL
Sbjct: 50 ARVFGVRSAMPALRAERLCPDAIFVPPDFARYKAVSRQVREIFLRHTDLVEPLSLDEAYL 109
Query: 68 DITEVCRERGISGIE----IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF 123
D+TE SGIE IA +R + EE LT SAG+APN+ LAK+ SD KP+GQF
Sbjct: 110 DVTEPK-----SGIELATDIARTIRAQIREETNLTASAGIAPNKFLAKIASDWRKPDGQF 164
Query: 124 VLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTA 183
V+P R V F+ LP+ ++ G+GKV E L GI TC + L++ SL+ +
Sbjct: 165 VIPPQR--VDAFLLPLPVNRVPGVGKVMEGKL-AARGIVTCGD-LRRWSLVD--LEEAFG 218
Query: 184 DFFLSV---GLGLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQ 238
F S+ G+ + +SISSE TF+ ED L L + ++AE +
Sbjct: 219 SFGRSLYNRARGIDERPVEPDQQVQSISSEDTFA--EDLLLEDLGEAIVQLAEKTWNATR 276
Query: 239 KEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKA--ELPVS--LRLI 294
K G T+ LKLKTA F + TR+ T ++ S E+ L+ ++ L+A +LP RL+
Sbjct: 277 KTERVGHTVVLKLKTAQFRILTRSFTPERPPESMEE-LRDIALALRARVDLPAETRYRLV 335
Query: 295 GLRVTQFNE 303
G+ + F E
Sbjct: 336 GVGLGGFRE 344
>gi|294507553|ref|YP_003571611.1| DNA polymerase IV [Salinibacter ruber M8]
gi|294343881|emb|CBH24659.1| DNA polymerase IV [Salinibacter ruber M8]
Length = 373
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 108/303 (35%), Positives = 161/303 (53%), Gaps = 11/303 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR +GV +A P A + CP+LIFV Y S RK+ +Y SLDEAYL
Sbjct: 65 ARPYGVHSAQPAVEADRKCPDLIFVSPRMDVYQEESKRIRKILRRYTDLVEPLSLDEAYL 124
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+TE R SG IA LR +YEE GLT SAGV P + +AKV SD++KP+G V+
Sbjct: 125 DVTEPKTGRP-SGTLIARRLRAEIYEETGLTASAGVGPGKFVAKVASDLDKPDGLTVVRP 183
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
D M FI+ LPI K GIG VT +++ GI T ++ + F
Sbjct: 184 DEQ--MEFIAQLPIEKFHGIGPVTAAKMQE-LGIQTGADLQETPERTLIHHFGKRGRHFK 240
Query: 188 SVGLGLGSTNTPQARFRKSISSERTFSVTEDKA---LLYRKLAEIAEMLSADMQKEGLRG 244
++ +G R RKS+ +ERTF ED A + +L+ IAE ++ +++ +G
Sbjct: 241 TLAVGTDDRPVQPDRDRKSVGAERTFP--EDIARAETMLERLSPIAERVAQRLRQANRKG 298
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFN 302
RT+TLKLK+ +V TR T+ + + + + ++ LL+ P+ +RL+G+ V+
Sbjct: 299 RTVTLKLKSHDHQVSTRQTTVDRPLRAEDALMTITERLLRRPHPLDEPVRLLGISVSSLT 358
Query: 303 EDK 305
E++
Sbjct: 359 EEE 361
>gi|374312136|ref|YP_005058566.1| DNA-directed DNA polymerase [Granulicella mallensis MP5ACTX8]
gi|358754146|gb|AEU37536.1| DNA-directed DNA polymerase [Granulicella mallensis MP5ACTX8]
Length = 382
Score = 165 bits (417), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 117/311 (37%), Positives = 171/311 (54%), Gaps = 19/311 (6%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFGVR+AMP A +LCPE IF+P DFT+Y S R++F ++ SLDEAYL
Sbjct: 67 ARRFGVRSAMPAITAERLCPEAIFLPPDFTRYKAVSRAVREIFQRHTDLIEPLSLDEAYL 126
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-P 126
D+T V + + ++A +R + EE LT SAGVAPN+ LAK+ SD KPNG FV+ P
Sbjct: 127 DVT-VNKNGLPTATKVASAIRQQIREELSLTASAGVAPNKFLAKIASDWRKPNGLFVIQP 185
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHSTADF 185
D + TF+ LP+ +I G+GKVTE L V GI T ++ + + L A F
Sbjct: 186 GD---LDTFLPPLPVGRIPGVGKVTETRLNQV-GIQTVGDLRNFELATLEAQFGRYGLRL 241
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTF----SVTEDKALLYRKLAEIAEMLSADMQKEG 241
+ G+ R KSIS+E TF ++E + L+ R +AE + ++E
Sbjct: 242 H-ELARGIDHNPVVPDRPTKSISAEDTFQRDIPLSETEELIRR----LAEKVWTASRRES 296
Query: 242 LRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHA-SVLLKAELPVS--LRLIGLRV 298
RT+ LKLKT+ F + TR+ T +S E++ A S+ + +L + RL+G+ +
Sbjct: 297 RMARTVVLKLKTSEFNILTRSHTPLVPPASCEELTTIALSLRERIDLAATQRFRLVGVGL 356
Query: 299 TQFNEDKVRAP 309
+ F E + P
Sbjct: 357 SNFREQESPPP 367
>gi|305665931|ref|YP_003862218.1| DNA polymerase IV [Maribacter sp. HTCC2170]
gi|88710706|gb|EAR02938.1| DNA polymerase IV [Maribacter sp. HTCC2170]
Length = 366
Score = 165 bits (417), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 111/299 (37%), Positives = 165/299 (55%), Gaps = 10/299 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR+AM G +A++ CP L FV + +Y S R +F Y SLDEAYL
Sbjct: 53 ARKFGVRSAMSGVMAKRNCPHLTFVKPRYNRYKEISKQIRNIFFDYTDLVEPLSLDEAYL 112
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQ-FVLP 126
D+T V ++ S IA+E+R + +E GL SAG++ N+ +AKV SD NKPNGQ V P
Sbjct: 113 DVT-VNKKGNPSATLIAQEIRKRIQDEVGLKASAGISVNKFVAKVASDFNKPNGQKTVNP 171
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADF 185
+ V+ F+ L IR G+GKVT + + GI T +E+ K L F S + +
Sbjct: 172 EE---VLQFLEDLEIRSFFGVGKVTAEKMYKL-GIFTGKELKTKSEEFLIENFGKSGSHY 227
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLRG 244
V G+ + R KS+ +ERTFS + + +L IA L + K + G
Sbjct: 228 H-KVVRGIHNGAVKPHRVPKSVGAERTFSENLSSEIFMLERLEHIANELERRLSKTKIAG 286
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFN 302
+T+TLK+K + F ++TR+ TL ++S+ IL+ A LL E + S+RL+G+ + N
Sbjct: 287 KTVTLKIKYSDFTLQTRSKTLPYFVSNKSLILEVAKELLYQEKMENSVRLLGISLANLN 345
>gi|289577475|ref|YP_003476102.1| DNA-directed DNA polymerase [Thermoanaerobacter italicus Ab9]
gi|289527188|gb|ADD01540.1| DNA-directed DNA polymerase [Thermoanaerobacter italicus Ab9]
Length = 389
Score = 165 bits (417), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 106/301 (35%), Positives = 167/301 (55%), Gaps = 11/301 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++G+ +AMP ++ARKLCP IF+ +Y S + P S+DEAYL
Sbjct: 48 ARKYGIHSAMPMYMARKLCPHGIFLSVRRKRYEEVSKQIFDILYSITPLVEPVSIDEAYL 107
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T++ + + IA+E++ V E GLT SAGV+ N+ LAK+ SD NKP+G V+
Sbjct: 108 DVTDIDKNPEV----IAKEIKKKVKETTGLTISAGVSYNKFLAKLASDWNKPDGFTVITE 163
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFF 186
D + + LP+ K+ GIG+ +E L+ + GINT ++L+ L +F + +
Sbjct: 164 DMIP--DILKPLPVSKVYGIGEKSEERLKSM-GINTIGDLLKLSQENLVEIFGKVGVEIY 220
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
L + G+ R KSI E+T T+DK LL ++++S ++ + GL R
Sbjct: 221 LRIR-GIDERPVETMREIKSIGKEKTLEKDTKDKKLLLHYAKLFSDIISEELFRAGLYAR 279
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHA-SVLLKAELPVSLRLIGLRVTQFNED 304
T+T+K+KT+ F + T++ TL KYI SEDI A ++ +L +RLIGL V+ +
Sbjct: 280 TVTVKIKTSDFAIHTKSKTLNKYIRLSEDIYNVAYEIIENIKLDQYIRLIGLSVSNLSAV 339
Query: 305 K 305
K
Sbjct: 340 K 340
>gi|430744026|ref|YP_007203155.1| nucleotidyltransferase/DNA polymerase [Singulisphaera acidiphila
DSM 18658]
gi|430015746|gb|AGA27460.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Singulisphaera acidiphila DSM 18658]
Length = 361
Score = 164 bits (416), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 111/302 (36%), Positives = 161/302 (53%), Gaps = 17/302 (5%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFGVR+AMP IA++ CPELIFV F Y S R +F +Y P SLDEAYL
Sbjct: 53 ARRFGVRSAMPSVIAKRKCPELIFVKPRFDVYRAVSQQIRTIFAEYTPLIEPLSLDEAYL 112
Query: 68 DITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP 126
D+TE +GI S E+AEE+R + E GLT SAGV+ N+ LAK+ SD KP+G FV+
Sbjct: 113 DVTE--NRKGIFSATEVAEEIRAKIRAETGLTASAGVSYNKFLAKMASDERKPDGLFVIT 170
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFF 186
+ + F+ +LP+ K GIG VT + + GI+ ++ + ++
Sbjct: 171 PKKGS--AFVENLPVGKFHGIGPVTRSKM-EALGIHNGGDLRSQTLSFLQKHFRKAGPYY 227
Query: 187 LSVGLGLGSTNTPQARFRKSISSERT-----FSVTEDKALLYRKLAEIAEMLSADMQKEG 241
S+ G+ R RKSI +E T F+V E +A L + ++
Sbjct: 228 FSLARGIDERPVCADRVRKSIGAETTFNTDLFTVEEARAALEPLIGKVWSYCEGTT---- 283
Query: 242 LRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS--LRLIGLRVT 299
+RGRT+TLK K A F+ TR T+ ++S + + S LL+ PVS +RL+G+ ++
Sbjct: 284 IRGRTVTLKAKYADFQQITRNRTVDVPVTSRAVLEEVVSALLERLFPVSKGIRLLGVALS 343
Query: 300 QF 301
Sbjct: 344 SL 345
>gi|365877904|ref|ZP_09417398.1| DNA polymerase IV [Elizabethkingia anophelis Ag1]
gi|442586482|ref|ZP_21005311.1| DNA polymerase IV [Elizabethkingia anophelis R26]
gi|365754447|gb|EHM96392.1| DNA polymerase IV [Elizabethkingia anophelis Ag1]
gi|442563801|gb|ELR81007.1| DNA polymerase IV [Elizabethkingia anophelis R26]
Length = 363
Score = 164 bits (416), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 103/266 (38%), Positives = 158/266 (59%), Gaps = 11/266 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++GVR+AMP A++ CP LIFV F +Y S R++F +Y SLDEAYL
Sbjct: 52 ARQYGVRSAMPSKTAQQKCPNLIFVRPRFLRYKEISQQIRQIFYEYTDLVEPLSLDEAYL 111
Query: 68 DITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL- 125
D+TE ++GI S +IA E+R ++E+ GLT SAG++ N+ LAKV SDINKPNGQ +
Sbjct: 112 DVTE--NKKGIESANQIALEIRKKIFEKTGLTASAGISVNKFLAKVASDINKPNGQKTIH 169
Query: 126 PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTAD 184
P + V++F+ LPI K GIGKVT + + + I +++ K L +F S
Sbjct: 170 PQN---VLSFLEELPIEKFYGIGKVTANKM-NTLSIYKGKDLKNKSLEELVLLFGKSGKH 225
Query: 185 FFLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLR 243
++ +V G+ + R KS++ E TF D+ ++ K+ EI + L +++ G++
Sbjct: 226 YY-NVVRGIQYSEVKPHRIAKSVAVEETFWEDLLDEDTVFEKIDEITDELFRRLERSGIK 284
Query: 244 GRTLTLKLKTASFEVRTRAVTLQKYI 269
G+TLTLK+K F + TR+ T +Y+
Sbjct: 285 GKTLTLKIKYKDFTLFTRSKTESQYL 310
>gi|384214582|ref|YP_005605746.1| DNA-damage-inducible protein [Bradyrhizobium japonicum USDA 6]
gi|354953479|dbj|BAL06158.1| DNA-damage-inducible protein [Bradyrhizobium japonicum USDA 6]
Length = 366
Score = 164 bits (416), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 108/304 (35%), Positives = 167/304 (54%), Gaps = 17/304 (5%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR+AMP A++ CP+LIFV F Y S R +F ++ P SLDEAYL
Sbjct: 60 ARKFGVRSAMPSVTAKRQCPDLIFVRPRFEVYKAISRQIRDIFAEHTPIIEPLSLDEAYL 119
Query: 68 DITEVCRERGISGIEIAEE----LRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF 123
D+TE + GI +A + +R + E GL SAG++ N+ LAK+ SD KPNGQF
Sbjct: 120 DVTE-----NLQGIPLARDVALLIREKIKAETGLNASAGISYNKFLAKLASDHRKPNGQF 174
Query: 124 VLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEML-QKGSLLCAVFSHST 182
V+ D F+ +LP+ K GIG T + + G+ T ++ Q + A F S
Sbjct: 175 VISPDMGP--AFVETLPVGKFHGIGPATSAKM-NALGLFTGLDIRNQTLEFMNANFGKSG 231
Query: 183 ADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDK-ALLYRKLAEIAEMLSADMQKEG 241
A ++ + G+ R RKSI +E TFS D+ L +L + + + + G
Sbjct: 232 A-YYYWISRGVDERPVRANRIRKSIGAETTFSTDLDEYGALAAELKPLVDKVWRHCETTG 290
Query: 242 LRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS--LRLIGLRVT 299
RGRT+TLK+K A FE+ TR+ ++ ++ +D+ + A LL+AE+P+ +RL+G+ ++
Sbjct: 291 NRGRTVTLKIKFADFEIITRSRSVTAPVAGRDDLERLACGLLEAEMPLPKRVRLLGVSLS 350
Query: 300 QFNE 303
+
Sbjct: 351 ALQD 354
>gi|297543787|ref|YP_003676089.1| DNA-directed DNA polymerase [Thermoanaerobacter mathranii subsp.
mathranii str. A3]
gi|296841562|gb|ADH60078.1| DNA-directed DNA polymerase [Thermoanaerobacter mathranii subsp.
mathranii str. A3]
Length = 389
Score = 164 bits (416), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 106/301 (35%), Positives = 167/301 (55%), Gaps = 11/301 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++G+ +AMP ++ARKLCP IF+ +Y S + P S+DEAYL
Sbjct: 48 ARKYGIHSAMPMYMARKLCPHGIFLSVRRKRYEEVSKQIFDILYSITPLVEPVSIDEAYL 107
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T++ + + IA+E++ V E GLT SAGV+ N+ LAK+ SD NKP+G V+
Sbjct: 108 DVTDIDKNPEV----IAKEIKKKVKETTGLTISAGVSYNKFLAKLASDWNKPDGFTVITE 163
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFF 186
D + + LP+ K+ GIG+ +E L+ + GINT ++L+ L +F + +
Sbjct: 164 DMIP--DILKPLPVSKVYGIGEKSEERLKSM-GINTIGDLLKLSQENLVEIFGKVGVEIY 220
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
L + G+ R KSI E+T T+DK LL ++++S ++ + GL R
Sbjct: 221 LRIR-GIDERPVETMREIKSIGKEKTLEKDTKDKKLLLHYAKLFSDIISEELFRAGLYAR 279
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHA-SVLLKAELPVSLRLIGLRVTQFNED 304
T+T+K+KT+ F + T++ TL KYI SEDI A ++ +L +RLIGL V+ +
Sbjct: 280 TVTVKIKTSDFAIHTKSKTLNKYIRLSEDIYNVAYEIIENIKLDQYIRLIGLSVSNLSAV 339
Query: 305 K 305
K
Sbjct: 340 K 340
>gi|190572635|ref|YP_001970480.1| DNA polymerase IV [Stenotrophomonas maltophilia K279a]
gi|226738242|sp|B2FLR2.1|DPO4_STRMK RecName: Full=DNA polymerase IV; Short=Pol IV
gi|190010557|emb|CAQ44166.1| putative DNA-damage-inducible protein p [Stenotrophomonas
maltophilia K279a]
Length = 364
Score = 164 bits (416), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 116/306 (37%), Positives = 164/306 (53%), Gaps = 21/306 (6%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FGVR+AMP A +LCP+ IFVP DF +Y S R +F ++ SLDEAYL
Sbjct: 50 ARVFGVRSAMPAVRAERLCPDAIFVPPDFARYKAVSQQVRAIFLRHTDLVEPLSLDEAYL 109
Query: 68 DITEVCRERGISGIE----IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF 123
D++E SGIE IA +R + EE LT SAG+APN+ LAK+ SD KP+GQF
Sbjct: 110 DVSEPK-----SGIELATDIARTIRAQIREETNLTASAGIAPNKFLAKIASDWRKPDGQF 164
Query: 124 VLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTA 183
V+P R V F++ LP+ ++ G+GKV E L GI TC ++ Q + S
Sbjct: 165 VIPPQR--VDAFLAPLPVNRVPGVGKVMEGKL-AARGIVTCGDLRQWALIDLEEAFGSFG 221
Query: 184 DFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEG 241
+ G+ + +SISSE TF+ ED L L + ++A +K
Sbjct: 222 RSLYNRARGIDERPVEPDQQVQSISSEDTFA--EDLLLEDLTEAIVQLAGKTWNATRKTE 279
Query: 242 LRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKA--ELPVS--LRLIGLR 297
G T+ LKLKTA F + TR+ T ++ S E+ L+ ++ L+A +LP RL+G+
Sbjct: 280 RIGHTVVLKLKTAQFRILTRSFTPERPPESMEE-LRDIALALRARVDLPAETRYRLVGVG 338
Query: 298 VTQFNE 303
+ F E
Sbjct: 339 LGGFRE 344
>gi|334318683|ref|YP_004551242.1| DNA-directed DNA polymerase [Sinorhizobium meliloti AK83]
gi|334099110|gb|AEG57119.1| DNA-directed DNA polymerase [Sinorhizobium meliloti AK83]
Length = 378
Score = 164 bits (416), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 113/310 (36%), Positives = 166/310 (53%), Gaps = 13/310 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGV +AMP A++ CPELIFVP F Y S + +F +Y P SLDEAYL
Sbjct: 71 ARKFGVHSAMPSVTAKRKCPELIFVPHRFDVYRAVSRQIQAIFAEYTPLIEPLSLDEAYL 130
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+TE + ++ EIAEE+RT + E LT SAGV+ N+ LAK+ SD KP+G FV+
Sbjct: 131 DVTENLKGLRLA-TEIAEEIRTRIKAETHLTASAGVSYNKFLAKMASDQRKPDGLFVITP 189
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
R F+ +LP++K G+G T ++ + GI T ++ + + +F
Sbjct: 190 KRGP--EFVQALPVKKFHGVGPATAEKMKRL-GIETGADLKSRDLAFLQQHFGKSGPYFY 246
Query: 188 SVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADM---QKEGLRG 244
+ G+ R RKSI +E TF ED L A + ++ + G+RG
Sbjct: 247 WIARGIDEREVKPDRIRKSIGAEDTFR--EDVHDLETARAGLKPLIDKVWHYCEASGIRG 304
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFN 302
+T+TLK+K A F TR+ T+ I+S ++ + A +LL PV +RL+G VT +
Sbjct: 305 KTMTLKVKWADFTQITRSKTIVAPIASVAEMSEIAELLLSPIFPVPKGIRLLG--VTLSS 362
Query: 303 EDKVRAPSDP 312
DKV S+P
Sbjct: 363 LDKVDDRSEP 372
>gi|260583597|ref|ZP_05851345.1| DNA polymerase IV [Granulicatella elegans ATCC 700633]
gi|260158223|gb|EEW93291.1| DNA polymerase IV [Granulicatella elegans ATCC 700633]
Length = 352
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 111/304 (36%), Positives = 167/304 (54%), Gaps = 18/304 (5%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FGVR+AMP A +LCP+ I VP +F +Y S R++F +Y P S+DEAYL
Sbjct: 48 ARAFGVRSAMPTSKAIRLCPKAIIVPPNFERYRQLSLQIREIFHRYTPLVEPMSIDEAYL 107
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+TE + + + I IA E++ ++Y+E GLTCS GV+ N+ LAK+ S KP G V+
Sbjct: 108 DVTENSKNQTSATI-IAREIQEAIYKEVGLTCSVGVSFNKFLAKIASGQRKPAGITVI-- 164
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTE---HILRDVFG---INTCEEMLQKGSLLCAVFSHS 181
D+ + FI +LP+ K G+G+ T H + + G +N +E L K F
Sbjct: 165 DQESFPEFIKTLPVEKFFGVGQATTKKLHQKKLLIGEDILNCSKEYLIK------YFGKQ 218
Query: 182 TADFFLSVGLGLGSTNTPQARFRKSISSERT-FSVTEDKALLYRKLAEIAEMLSADMQKE 240
+ V G + R RKS E T T D+ +L + + + +E +S ++K
Sbjct: 219 GEALYRQVR-GQSNDQLTLYRERKSYGKEETLLEDTTDEDVLQKYIEQFSEQISKWLKKN 277
Query: 241 GLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL-PVSLRLIGLRVT 299
L +T+T+KLK + FE +TR+ TL+ Y+ S E + A LL + S+RLIGL V+
Sbjct: 278 KLAAKTITIKLKQSDFETKTRSKTLETYVQSKEKLEIEAYHLLMEQYNNESVRLIGLTVS 337
Query: 300 QFNE 303
QF +
Sbjct: 338 QFEQ 341
>gi|167038401|ref|YP_001665979.1| DNA polymerase IV [Thermoanaerobacter pseudethanolicus ATCC 33223]
gi|167038865|ref|YP_001661850.1| DNA polymerase IV [Thermoanaerobacter sp. X514]
gi|256751141|ref|ZP_05492023.1| DNA-directed DNA polymerase [Thermoanaerobacter ethanolicus CCSD1]
gi|300913550|ref|ZP_07130867.1| DNA-directed DNA polymerase [Thermoanaerobacter sp. X561]
gi|307723435|ref|YP_003903186.1| DNA-directed DNA polymerase [Thermoanaerobacter sp. X513]
gi|320116805|ref|YP_004186964.1| DNA-directed DNA polymerase [Thermoanaerobacter brockii subsp.
finnii Ako-1]
gi|166853105|gb|ABY91514.1| DNA-directed DNA polymerase [Thermoanaerobacter sp. X514]
gi|166857235|gb|ABY95643.1| DNA-directed DNA polymerase [Thermoanaerobacter pseudethanolicus
ATCC 33223]
gi|256750047|gb|EEU63069.1| DNA-directed DNA polymerase [Thermoanaerobacter ethanolicus CCSD1]
gi|300890235|gb|EFK85380.1| DNA-directed DNA polymerase [Thermoanaerobacter sp. X561]
gi|307580496|gb|ADN53895.1| DNA-directed DNA polymerase [Thermoanaerobacter sp. X513]
gi|319929896|gb|ADV80581.1| DNA-directed DNA polymerase [Thermoanaerobacter brockii subsp.
finnii Ako-1]
Length = 389
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 107/298 (35%), Positives = 167/298 (56%), Gaps = 11/298 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++G+ +AMP ++ARKLCP IF+ +Y S + P S+DEAYL
Sbjct: 48 ARKYGIHSAMPMYMARKLCPHGIFLSVRRKRYEEVSAQIFDILYSITPLVEPVSIDEAYL 107
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T++ + I IA E++ V E GLT SAGV+ N+ LAK+ SD NKP+G V+
Sbjct: 108 DVTDIDKNPEI----IALEIKKKVKETTGLTISAGVSYNKFLAKLASDWNKPDGFMVITE 163
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFF 186
D + + LP+ K+ GIG+ +E L+ + GINT ++L+ L +F + +
Sbjct: 164 D--MIPDILKPLPVSKVYGIGQKSEERLKSM-GINTIGDLLKLSQENLVEIFGKVGVEIY 220
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
L + G+ R KSI E+T T+DK LL R ++++S ++ +E L R
Sbjct: 221 LRIR-GIDERPVETMREIKSIGKEKTLEKDTKDKKLLLRYAKLFSDIISEELFRERLYAR 279
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKA-ELPVSLRLIGLRVTQFN 302
T+T+K+KT+ F V T++ TL KYI EDI A ++++ +L +RLIGL V+ +
Sbjct: 280 TVTVKIKTSDFTVHTKSKTLNKYIRLGEDIYDVAYEIIESLKLDQYIRLIGLSVSNLS 337
>gi|159901912|gb|ABX10645.1| DNA-directed DNA polymerase IV [uncultured planctomycete 3FN]
Length = 384
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 104/305 (34%), Positives = 173/305 (56%), Gaps = 12/305 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FGV +AMP A++LCP+ +F+PT Y S R++F ++ P +LDEA+L
Sbjct: 46 ARSFGVHSAMPAATAKRLCPQGVFLPTRMPHYVDVSCQIREIFGRFTPLVEPLALDEAFL 105
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T R G EI ++T++++E L S G+APN+ LAK+ SD++KP+G FV+ N
Sbjct: 106 DVTGSSRLFGPPE-EIGRTIKTAIHDELQLVASVGIAPNKFLAKLASDLDKPDG-FVVVN 163
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADF 185
+ A+ F+ LP+ ++ G+GK L D+ GI ++ L + S L F S
Sbjct: 164 PK-AIHAFLDPLPVTRLWGVGKAAARKL-DLIGIQHIAQLRALPRES-LADNFGASGDQL 220
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRG 244
+L + G+ + R KSIS E TF+V +D L LA++ E ++ ++ LRG
Sbjct: 221 WL-LANGIDDRDVIPDRDAKSISHETTFAVDVDDMERLRGVLAQLTEQVARRVRAAELRG 279
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELP---VSLRLIGLRVTQF 301
RT+ LK++ + F+ TR+ L + +++I + A +L LP +++RL+G+ V+Q
Sbjct: 280 RTVQLKIRYSDFQTYTRSTKLSQPTDVTDEIWQAAQSMLATRLPERTLAVRLLGIGVSQL 339
Query: 302 NEDKV 306
+ K+
Sbjct: 340 DRSKL 344
>gi|261381373|ref|ZP_05985946.1| DNA-directed DNA polymerase [Neisseria subflava NJ9703]
gi|284795651|gb|EFC50998.1| DNA-directed DNA polymerase [Neisseria subflava NJ9703]
Length = 352
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 106/299 (35%), Positives = 161/299 (53%), Gaps = 11/299 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG+ +AM A++LCP+ +FV F Y S VF +Y SLDEAYL
Sbjct: 49 ARKFGLHSAMSVATAKRLCPQAVFVQPHFDLYRQVSAQIHAVFRRYTDLIEPLSLDEAYL 108
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T+ E E+A+ +R ++EE GLT SAG+APN+ LAK+ SD KPNGQFVLP
Sbjct: 109 DVTQNF-ENIPYASEVAKRIRAEIFEETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPP 167
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADF 185
+ +M F+ SLP+ KI G+GKVT + + G+ T ++ ++G LL + +
Sbjct: 168 QK--IMAFLESLPLGKIPGVGKVTLKKM-NALGMQTAGDLRRFERGELLNHFGRYGYRLY 224
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
L+ G+ + R + IS+E T A L +AE L ++++ + +
Sbjct: 225 DLARGIDERPVKAERERLQ--ISTEITLPEDLSLAQASSHLPHLAEDLWRQIERKNVEAK 282
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV---SLRLIGLRVTQF 301
+TLKLKT F + TR++T + S +L+ A LL+ P + RLIG+ V+
Sbjct: 283 GVTLKLKTHDFRIITRSLTYSSVLPDSASLLQAAHTLLQRIPPQREDAFRLIGIGVSHL 341
>gi|85709267|ref|ZP_01040332.1| DNA polymerase IV [Erythrobacter sp. NAP1]
gi|85687977|gb|EAQ27981.1| DNA polymerase IV [Erythrobacter sp. NAP1]
Length = 383
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 115/306 (37%), Positives = 167/306 (54%), Gaps = 20/306 (6%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR+AMP A++LCP+LIFV F Y S R++F + P+ SLDEAYL
Sbjct: 67 ARKFGVRSAMPSVTAKRLCPDLIFVRHRFDAYKEASRQIRRIFEHHTPHVEPLSLDEAYL 126
Query: 68 DITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP 126
D+TE GI S IAE +R + + LT SAGV+ N+ LAK+ SD NKPNG V+
Sbjct: 127 DVTE--DRLGIGSATRIAELIRQEIRAKTKLTASAGVSYNKFLAKLASDQNKPNGLCVIR 184
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADF 185
+ A F++ LPIR+ G+G E ++ + GI T ++ K L A F S AD+
Sbjct: 185 PGQGA--DFVAGLPIRRFHGVGPKAEEKMKRL-GIETGADLAAKDIEFLRANFG-SFADY 240
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSVTED---KALLYRKLAEIAEML-----SADM 237
G+ R RKS+ ERTFS ED A L L I E++ +A
Sbjct: 241 LYRAARGIDLRPVRAHRVRKSVGGERTFS--EDISSGAALRDTLENIIEIVWGRIENASK 298
Query: 238 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSL--RLIG 295
+ RGRT+TLK+K F++ +RA ++ +I ++ + + LL+ LP+ + RL+G
Sbjct: 299 DDKPTRGRTITLKVKFTDFQIMSRAKSVPHWIEDKQEFARLSRELLEEALPLPMPIRLMG 358
Query: 296 LRVTQF 301
L ++
Sbjct: 359 LTLSNL 364
>gi|342185958|emb|CCC95443.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 610
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 106/334 (31%), Positives = 170/334 (50%), Gaps = 20/334 (5%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR +GVRAA+PGFI KLC L+ VP DF Y S + ++ +YDP+ ++ +DE L
Sbjct: 198 ARSYGVRAAIPGFIGMKLCRNLVIVPPDFKAYRAESAIVHRIASEYDPDCVSVGMDELTL 257
Query: 68 DITEVCRERG--ISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL 125
++++ +G ++ +++A ELR V+ E LT SAG+ P LAK+ S+ NKPNGQ+ L
Sbjct: 258 EVSDYLSRQGGTMTAVDVATELRARVFRETQLTSSAGIGPTAALAKIASNYNKPNGQYEL 317
Query: 126 P-NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTAD 184
+ R VM ++ LP+R GIGK E+ L+ INT ++ ++ LC V +
Sbjct: 318 RLHTREDVMRYVRDLPLRAAPGIGKAMENTLKG-LDINTLGDIYERRVELCYVLTEKLYR 376
Query: 185 FFLSVGLGLGSTN----TPQARF--------RKSISSERTFSVTEDKALLYRKLAEIAEM 232
F L +G+ S P F RKS+ SER FS KA L I +
Sbjct: 377 FLLGNAIGVMSWPCSCVAPAYEFCDRTLITARKSVGSERAFSALCSKAELKEVATTIFQA 436
Query: 233 LSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELP--VS 290
+ +++ R ++L+++ SF ++ +L ++ + + LL + S
Sbjct: 437 VYDELRANEWVCRQVSLRIRWPSFRIQQFTKSLPQHSDDHSTLNRALGELLLPHVSYYAS 496
Query: 291 LRLIGLRVTQFNEDK--VRAPSDPTQKTLTNFMT 322
+RL+G+R+ K + QKTL+ F T
Sbjct: 497 MRLLGIRLLDLVSKKEYLAKQRGGVQKTLSQFCT 530
>gi|393773805|ref|ZP_10362197.1| DNA polymerase IV [Novosphingobium sp. Rr 2-17]
gi|392720746|gb|EIZ78219.1| DNA polymerase IV [Novosphingobium sp. Rr 2-17]
Length = 373
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 109/300 (36%), Positives = 162/300 (54%), Gaps = 13/300 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FGVR+AMP A +LCP+L+F F Y S R +F Y P+ SLDEAYL
Sbjct: 63 ARVFGVRSAMPSARAVRLCPDLVFCKPRFEVYREVSQQIRAIFLDYTPHVEPLSLDEAYL 122
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-P 126
D+T + G S IA+E+R + E GLT SAGV+ N+ +AK+ SD NKP+G V+ P
Sbjct: 123 DVTADLKGIG-SATRIAQEIRRRIRAETGLTASAGVSYNKFIAKLASDENKPDGLCVIRP 181
Query: 127 NDRMAVMTFISSLPIRKIGGIG-KVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTAD 184
D A F+++LP+R+ G+G + E + R GI T ++ K + L A F S A+
Sbjct: 182 GDGAA---FVAALPVRRFHGVGPRGAEKMAR--LGIETGADLASKDLAFLRANFG-SFAE 235
Query: 185 FFLSVGLGLGSTNTPQARFRKSISSERT-FSVTEDKALLYRKLAEIAEMLSADMQKEGLR 243
+ G+ R RKS+ ERT F D L + I +++ +++ R
Sbjct: 236 YLFRAARGVDLRQVRADRPRKSVGGERTFFENIVDPVALRETMDHIVDVVWERIERSQAR 295
Query: 244 GRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQF 301
GRT+TLKL+ A F+ TRA +L +++ + LL E+P+ +RL+GL ++
Sbjct: 296 GRTVTLKLRYADFQTLTRARSLPHFVADKAEFAALGHALLDEEMPLPQPIRLMGLTLSAL 355
>gi|222149470|ref|YP_002550427.1| DNA polymerase IV [Agrobacterium vitis S4]
gi|221736453|gb|ACM37416.1| DNA-damage-inducible protein [Agrobacterium vitis S4]
Length = 385
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 102/302 (33%), Positives = 161/302 (53%), Gaps = 9/302 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FGV +AMP A++ CP+LIFVP F Y S R++F +Y P SLDEAYL
Sbjct: 78 ARAFGVHSAMPSVTAKRKCPDLIFVPPRFDVYRQVSHQIREIFAEYTPLIEPLSLDEAYL 137
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-P 126
D+TE + I+ EIA E+R + GL SAG++ N+ LAK+ SD+NKPNGQ V+ P
Sbjct: 138 DVTENLKGMEIA-TEIALEIRAKIKAATGLNASAGISYNKFLAKMASDLNKPNGQAVITP 196
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFF 186
+ F+ +LP+++ G+G T ++ GI T ++ K + +F
Sbjct: 197 KNGPG---FVEALPVKRFHGVGPATAERMQR-HGIETGLDLKSKSLQFLQTHFGKSGSYF 252
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYR-KLAEIAEMLSADMQKEGLRGR 245
+ G+ R RKS+ +E TF D R +L +AE + + ++G+
Sbjct: 253 YGIARGIDERQVRADRIRKSVGAEDTFVEDIDDLDPARAELRPLAEKVWRYCESHDIKGK 312
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFNE 303
T+T+K+K + F TR+ T+ Y+S + I+ A LL + P +RL+G+ ++ N
Sbjct: 313 TITVKIKYSDFSQATRSKTVAGYVSDIDMIMGIAEPLLASVFPFKHPVRLLGITLSSLNT 372
Query: 304 DK 305
++
Sbjct: 373 EE 374
>gi|312069855|ref|XP_003137876.1| hypothetical protein LOAG_02290 [Loa loa]
Length = 650
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 113/359 (31%), Positives = 173/359 (48%), Gaps = 96/359 (26%)
Query: 20 FIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDIT--------- 70
F +KLCP L + F KY S + RK+F YDP+F A LDEAY+++T
Sbjct: 144 FYCKKLCPHLKIISGSFEKYREASSVARKIFRDYDPDFHADGLDEAYINLTTYIQNRFLT 203
Query: 71 ------------------------------------EVC----------RERGISGI--- 81
E+C R+R G+
Sbjct: 204 GSAEHERIRYMGECVCRLPLITENEMYHLVSAEITEEICTKCKKLRKCVRDRITFGVDVD 263
Query: 82 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 141
EI E+R V + GLTCSAG+APN LLAKVCS+INKPNGQ+ L N+R AV+ F+ LPI
Sbjct: 264 EIVHEIRFRVEQAVGLTCSAGIAPNSLLAKVCSNINKPNGQYRLLNEREAVLNFLKDLPI 323
Query: 142 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQA 201
RKI GIG VTE +L+ + G+ C ++ ++ ++ +F+ + ++FL + G+ T
Sbjct: 324 RKISGIGPVTEAVLKGI-GLEKCGDLYEQRGIISLLFTQRSCEYFLRIARGISHT----- 377
Query: 202 RFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTR 261
+S+ +E S+ D + G GRT+T+K+K ++F+V TR
Sbjct: 378 --LESLCNELIDSL-------------------PDHRVRG--GRTVTVKMKFSTFDVITR 414
Query: 262 AVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQ--FNEDKVRAPSDP 312
++ IS + + S ++ E+ LRL+G+R+ F +K+ PS+P
Sbjct: 415 CCSVDYMISDVDRLFALCSKFVRREMHNDHGSDKYLRLLGVRLAHLVFENEKIE-PSNP 472
>gi|452751626|ref|ZP_21951371.1| DNA polymerase IV [alpha proteobacterium JLT2015]
gi|451960845|gb|EMD83256.1| DNA polymerase IV [alpha proteobacterium JLT2015]
Length = 362
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 110/287 (38%), Positives = 157/287 (54%), Gaps = 16/287 (5%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FGVR+AMP A++LCP+LIFV + F Y S R++F ++ SLDEAYL
Sbjct: 54 ARVFGVRSAMPSVTAQRLCPDLIFVKSRFDVYRSVSQQIREIFARHTDLIEPLSLDEAYL 113
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-P 126
D+T R EIA E+R + LT SAGV+ N+ LAK+ SD NKP+G V+ P
Sbjct: 114 DVTASGR----PATEIAREIRAEILSTTRLTASAGVSYNKFLAKLASDQNKPDGLCVIRP 169
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADF 185
++ A F++ LP+++ G+G VT + + FGI T ++ K L F S AD+
Sbjct: 170 HEGAA---FVAGLPVKRFHGVGPVTAAKM-ERFGIRTGADLAAKSREWLQGNFGRS-ADY 224
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSVTED---KALLYRKLAEIAEMLSADMQKEGL 242
+ G+ +R RKSI +ERTFS ED +A L L + E + + + G
Sbjct: 225 YYGAARGIDHRPVRASRVRKSIGAERTFS--EDFRTRADLLAALEPVIEAVWERIDRAGA 282
Query: 243 RGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV 289
GRT+TLK+K A F+ TRA + + +S + LL+ ELPV
Sbjct: 283 AGRTVTLKIKFADFQQITRARSFETPVSDRGMFTRIGHDLLERELPV 329
>gi|407690031|ref|YP_006813615.1| DNA polymerase IV 2 [Sinorhizobium meliloti Rm41]
gi|407321206|emb|CCM69808.1| DNA polymerase IV 2 [Sinorhizobium meliloti Rm41]
Length = 378
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 106/300 (35%), Positives = 161/300 (53%), Gaps = 11/300 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGV +AMP A++ CPELIFVP F Y S + +F +Y P SLDEAYL
Sbjct: 71 ARKFGVHSAMPSVTAKRKCPELIFVPHRFDVYRAVSRQIQAIFAEYTPLIEPLSLDEAYL 130
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+TE + ++ EIAEE+RT + E LT SAGV+ N+ LAK+ SD KP+G FV+
Sbjct: 131 DVTENLKGLRLA-TEIAEEIRTRIKAETHLTASAGVSYNKFLAKMASDQRKPDGLFVITP 189
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
R F+ +LP++K G+G T ++ + GI T ++ + + +F
Sbjct: 190 KRGP--EFVQALPVKKFHGVGPATAEKMKRL-GIETGADLKSRDLAFLQQHFGKSGPYFY 246
Query: 188 SVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADM---QKEGLRG 244
+ G+ R RKSI +E TF ED L A + ++ + G+RG
Sbjct: 247 WIARGIDEREVKPDRIRKSIGAEDTFR--EDVHDLETARAGLKPLIDKVWHYCEASGIRG 304
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFN 302
+T+TLK+K A F TR+ T+ I+S ++ + A +LL PV +RL+G+ ++ +
Sbjct: 305 KTMTLKVKWADFTQITRSKTIVAPIASVAEMREIAELLLSPIFPVPKGIRLLGVTLSSLD 364
>gi|418398635|ref|ZP_12972189.1| DNA polymerase IV [Sinorhizobium meliloti CCNWSX0020]
gi|359507493|gb|EHK80001.1| DNA polymerase IV [Sinorhizobium meliloti CCNWSX0020]
Length = 346
Score = 163 bits (412), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 104/302 (34%), Positives = 163/302 (53%), Gaps = 13/302 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGV +AMP A++ CPELIFVP F Y S + +F +Y P SLDEAYL
Sbjct: 39 ARKFGVHSAMPSVTAKRKCPELIFVPHRFDVYRAVSRQIQAIFAEYTPLIEPLSLDEAYL 98
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-P 126
D+TE + ++ EIAEE+R + E LT SAGV+ N+ LAK+ SD KP+G FV+ P
Sbjct: 99 DVTENLKGMQLA-TEIAEEIRARIRAETQLTASAGVSYNKFLAKIASDQRKPDGLFVITP 157
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFF 186
A F+ +LP++K G+G T ++ + GI T ++ + + +F
Sbjct: 158 KHGPA---FVQALPVKKFHGVGPATAEKMKKL-GIETGADLKSRDLAFLQQHFGKSGPYF 213
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADM---QKEGLR 243
+ G+ R RKS+ +E TF ED L A + ++ + G+R
Sbjct: 214 YWIARGIDEREVKPNRIRKSVGAEDTFR--EDVHYLEAARAGLKPLIDKVWHYCEASGIR 271
Query: 244 GRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS--LRLIGLRVTQF 301
G+T+TLK+K A F TR+ T+ I+S+ ++ + A +LL P + +RL+G+ ++
Sbjct: 272 GKTVTLKVKWADFTQITRSKTIVAPIASAAEMGEIAELLLSPIFPAAKGIRLLGVTLSSL 331
Query: 302 NE 303
++
Sbjct: 332 DQ 333
>gi|384215689|ref|YP_005606855.1| DNA-damage-inducible protein [Bradyrhizobium japonicum USDA 6]
gi|354954588|dbj|BAL07267.1| DNA-damage-inducible protein [Bradyrhizobium japonicum USDA 6]
Length = 368
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 103/310 (33%), Positives = 169/310 (54%), Gaps = 17/310 (5%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR+AMP A++ CP+LIFV F Y S R++F ++ P SLDEAYL
Sbjct: 62 ARKFGVRSAMPSVTAKRQCPDLIFVKPRFEVYKAVSQQIREIFAEHTPTIEPLSLDEAYL 121
Query: 68 DITEVCRERGISGIEIAEE----LRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF 123
D+TE + GI +A + +R + E GL SAG++ N+ LAK+ SD KPNGQ+
Sbjct: 122 DVTE-----NLQGIPLARDVALAIRAKIKEVTGLNASAGISYNKFLAKLASDHRKPNGQY 176
Query: 124 VLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTA 183
V+ + F+ +LP+ K GIG T + + G+ T +M +
Sbjct: 177 VITPEMGP--AFVENLPVGKFHGIGPATGAKM-NALGLYTGLDMRNQSLEFMQTNFGKAG 233
Query: 184 DFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEG 241
++ S+ G+ + R RKS+ +E TFS + E +A++ ++ + + + +++G
Sbjct: 234 TYYYSISRGVDNREVRADRVRKSVGAENTFSTDLIEFEAMV-SEVQPLIDKVWRHCEEKG 292
Query: 242 LRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAE--LPVSLRLIGLRVT 299
RGRT+TLK+K A FE+ TR+ ++ +SS D+ + LL+ E LP +RL+G+ ++
Sbjct: 293 SRGRTVTLKVKFADFEIMTRSRSVPTAVSSRSDLERLVISLLENETPLPRPVRLLGISLS 352
Query: 300 QFNEDKVRAP 309
+ + P
Sbjct: 353 SLHPEDGAEP 362
>gi|325103858|ref|YP_004273512.1| DNA-directed DNA polymerase [Pedobacter saltans DSM 12145]
gi|324972706|gb|ADY51690.1| DNA-directed DNA polymerase [Pedobacter saltans DSM 12145]
Length = 366
Score = 162 bits (410), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 107/308 (34%), Positives = 172/308 (55%), Gaps = 12/308 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++GVR+AM A KLCP LIF F Y S R +F +Y SLDEAYL
Sbjct: 56 ARKYGVRSAMSSRTAIKLCPHLIFTRPRFDVYKEVSSHIRSIFYRYTDIIEPLSLDEAYL 115
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLP 126
D+T+ + G S I+IA++++ + +E LT SAG++ ++ +AK+ SD KP+G F+ P
Sbjct: 116 DVTDDKQNIG-SAIDIAKKIKQEIKDELDLTASAGISTSKFIAKIASDFQKPDGLTFIGP 174
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFF 186
+ ++ FI +LPI K G+GKVT ++ + N + K + L F S FF
Sbjct: 175 S---KIVPFIEALPIEKFFGVGKVTAAKMKKLGIFNGADLKKWKQNDLTKQFGKS-GKFF 230
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTF-SVTEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
+ G+ + + R KS+ +E TF + +D +L +L +++E +S + + +G+
Sbjct: 231 YEIVRGIDNRSVKPNRISKSVGAEDTFENDIDDIEILNEELQKLSERVSRRLNDKEFKGK 290
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKA--ELPVSLRLIGLRVTQFNE 303
T+TLK+K + F TR+ TL Y +S + I +HAS LL+ +RL+G+ V+ F
Sbjct: 291 TMTLKVKFSDFTQITRSTTLDFYTNSFDIIFEHASSLLEHVDREEKRIRLLGVSVSHFFH 350
Query: 304 DKVRAPSD 311
+K P+D
Sbjct: 351 EK---PAD 355
>gi|423016898|ref|ZP_17007619.1| DNA polymerase IV [Achromobacter xylosoxidans AXX-A]
gi|338780129|gb|EGP44547.1| DNA polymerase IV [Achromobacter xylosoxidans AXX-A]
Length = 360
Score = 162 bits (410), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 96/258 (37%), Positives = 143/258 (55%), Gaps = 6/258 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFGV +AM A++LCP+ ++VP DF +Y S R++F ++ SLDEAYL
Sbjct: 51 ARRFGVHSAMSAVRAQRLCPQAVYVPPDFNRYREVSRQIRQIFARHTDLIEPLSLDEAYL 110
Query: 68 DITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP 126
D+T + G+ S E+A+ +R + E GLT SAGVAPN+ LAK+ SD NKP+GQFV+
Sbjct: 111 DVT--VNKLGLPSATEVAQVIRQQIRAETGLTASAGVAPNKFLAKIASDWNKPDGQFVIR 168
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFF 186
R V+ F+ LP+RK+ G+GKVT+ L + GI T ++ G +
Sbjct: 169 PTR--VLEFLQPLPVRKVPGVGKVTQARL-EQLGIQTVGDLATHGVQELEHYFGRYGRRL 225
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRT 246
+ G+ + + +S+E TFS + + +AE + + K+G GRT
Sbjct: 226 YELARGIDEREVQTDQPLQQVSAETTFSEDVRLEAIGEAIDRMAEKVWSQALKKGALGRT 285
Query: 247 LTLKLKTASFEVRTRAVT 264
+ LKLKT F + TR+ T
Sbjct: 286 VVLKLKTDRFRILTRSQT 303
>gi|402823561|ref|ZP_10872979.1| DNA polymerase IV [Sphingomonas sp. LH128]
gi|402262917|gb|EJU12862.1| DNA polymerase IV [Sphingomonas sp. LH128]
Length = 375
Score = 162 bits (410), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 107/301 (35%), Positives = 161/301 (53%), Gaps = 11/301 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR+AMP A +LCP+L+F F Y S R +F Y P+ SLDEAYL
Sbjct: 65 ARKFGVRSAMPSARAVRLCPDLVFRKPRFEVYREVSQQIRAIFLDYTPHVEPLSLDEAYL 124
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T + G S IA+E+R + + LT SAGV+ N+ LAK+ SD NKP+G V+
Sbjct: 125 DVTADLKGIG-SATRIAQEIRRRIKADTRLTASAGVSYNKFLAKLASDQNKPDGLCVIRP 183
Query: 128 DRMAVMTFISSLPIRKIGGIG-KVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADF 185
A F++ LP+R+ G+G + E + R GI T ++ K + L A F S A++
Sbjct: 184 GEGA--QFVAGLPVRRFHGVGPRGAEKMAR--LGIETGADLAGKDLAFLRANFG-SFAEY 238
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERT-FSVTEDKALLYRKLAEIAEMLSADMQKEGLRG 244
G+ R RKS+ ERT F ED L + I + + +++ G RG
Sbjct: 239 LFRAARGVDLRQVRADRPRKSVGGERTFFENIEDPVALRETMDHIVDTVWERIERSGARG 298
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFN 302
RT+T+KL+ A F+ TRA +L +++ + LL+ LP+ +RL+GL ++
Sbjct: 299 RTVTMKLRYADFQTLTRARSLHHFVADKAEFSAIGHALLEDHLPLPQPIRLMGLTLSALE 358
Query: 303 E 303
+
Sbjct: 359 Q 359
>gi|83814230|ref|YP_445661.1| DNA polymerase IV [Salinibacter ruber DSM 13855]
gi|83755624|gb|ABC43737.1| putative DNA polymerase IV [Salinibacter ruber DSM 13855]
Length = 373
Score = 162 bits (410), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 107/303 (35%), Positives = 160/303 (52%), Gaps = 11/303 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR +GV +A P A + CP+LIFV Y S RK+ +Y SLDEAYL
Sbjct: 65 ARPYGVHSAQPAVEADRKCPDLIFVSPRMDVYQEESKRIRKILRRYTDLVEPLSLDEAYL 124
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+TE R SG IA LR +YEE GLT SAGV P + +AKV SD++KP+G V+
Sbjct: 125 DVTEPKTGRP-SGTLIARRLRAEIYEETGLTASAGVGPGKFVAKVASDLDKPDGLTVVRP 183
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
D M FI+ LPI K GIG VT +++ GI T ++ + F
Sbjct: 184 DEQ--MEFIAQLPIEKFHGIGPVTAAKMQE-LGIQTGADLQETPERTLIHHFGKRGRHFK 240
Query: 188 SVGLGLGSTNTPQARFRKSISSERTFSVTEDKA---LLYRKLAEIAEMLSADMQKEGLRG 244
++ +G R RKS+ +ERTF ED A + +L+ IAE ++ +++ +G
Sbjct: 241 TLAVGTDDRPVQPDRDRKSVGAERTFP--EDIARAETMLDRLSPIAERVAQRLRQANRKG 298
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFN 302
RT+TLKLK+ +V TR T+ + + + + ++ LL+ P +RL+G+ V+
Sbjct: 299 RTVTLKLKSHDHQVSTRQTTVDRPLRAEDALMTITERLLRRPHPPDEPVRLLGISVSSLT 358
Query: 303 EDK 305
+++
Sbjct: 359 DEE 361
>gi|384141455|ref|YP_005524165.1| DNA polymerase IV, devoid of proofreading, damage-inducible protein
P [Acinetobacter baumannii MDR-ZJ06]
gi|385235754|ref|YP_005797093.1| DNA polymerase IV [Acinetobacter baumannii TCDC-AB0715]
gi|387125587|ref|YP_006291469.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Acinetobacter baumannii MDR-TJ]
gi|416150487|ref|ZP_11603372.1| nucleotidyltransferase/DNA polymerase [Acinetobacter baumannii
AB210]
gi|417571512|ref|ZP_12222369.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC189]
gi|417874790|ref|ZP_12519632.1| DNA polymerase IV [Acinetobacter baumannii ABNIH2]
gi|421205151|ref|ZP_15662251.1| dna polymerase iv [Acinetobacter baumannii AC12]
gi|421536653|ref|ZP_15982890.1| DNA polymerase IV, devoid of proofreading, damage-inducible protein
P [Acinetobacter baumannii AC30]
gi|421665373|ref|ZP_16105491.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC087]
gi|421670582|ref|ZP_16110574.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC099]
gi|421701851|ref|ZP_16141338.1| DNA polymerase IV [Acinetobacter baumannii ZWS1122]
gi|421705664|ref|ZP_16145086.1| DNA polymerase IV [Acinetobacter baumannii ZWS1219]
gi|424054052|ref|ZP_17791583.1| DNA polymerase IV [Acinetobacter baumannii Ab11111]
gi|425754620|ref|ZP_18872477.1| putative DNA polymerase IV [Acinetobacter baumannii Naval-113]
gi|323516262|gb|ADX90643.1| DNA polymerase IV [Acinetobacter baumannii TCDC-AB0715]
gi|333363953|gb|EGK45967.1| nucleotidyltransferase/DNA polymerase [Acinetobacter baumannii
AB210]
gi|342227896|gb|EGT92804.1| DNA polymerase IV [Acinetobacter baumannii ABNIH2]
gi|347591948|gb|AEP04669.1| DNA polymerase IV, devoid of proofreading, damage-inducible protein
P [Acinetobacter baumannii MDR-ZJ06]
gi|385880079|gb|AFI97174.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Acinetobacter baumannii MDR-TJ]
gi|395551960|gb|EJG17969.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC189]
gi|398325341|gb|EJN41519.1| dna polymerase iv [Acinetobacter baumannii AC12]
gi|404667538|gb|EKB35459.1| DNA polymerase IV [Acinetobacter baumannii Ab11111]
gi|407195442|gb|EKE66575.1| DNA polymerase IV [Acinetobacter baumannii ZWS1219]
gi|407195695|gb|EKE66822.1| DNA polymerase IV [Acinetobacter baumannii ZWS1122]
gi|409985414|gb|EKO41630.1| DNA polymerase IV, devoid of proofreading, damage-inducible protein
P [Acinetobacter baumannii AC30]
gi|410384422|gb|EKP36931.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC099]
gi|410390444|gb|EKP42833.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC087]
gi|425496514|gb|EKU62640.1| putative DNA polymerase IV [Acinetobacter baumannii Naval-113]
Length = 351
Score = 162 bits (410), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 111/301 (36%), Positives = 167/301 (55%), Gaps = 13/301 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG+R+AM ARKLCP+++ + +F KY S +F +Y SLDEAYL
Sbjct: 47 ARQFGLRSAMSMSQARKLCPQVVIIEPNFEKYRAISAQIHSIFQQYTTLIEPLSLDEAYL 106
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+TE ++ S E+A +R ++ + GLT SAGVAPN+ LAKV SD NKPNG FV+
Sbjct: 107 DVTENLKQIA-SATEVAMHIREDIFRQTGLTASAGVAPNKFLAKVASDWNKPNGLFVIKP 165
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
++A +FI LP++KI G+GKVT+ L+ + ++T + LQK + AV H +
Sbjct: 166 SQVA--SFIQDLPLKKIPGVGKVTQEKLQQL-ELHTLGD-LQK--IEEAVLVHHFGKYGQ 219
Query: 188 SVGL-GLGSTNTP-QA-RFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRG 244
+ L G N P QA R R+ IS E TF A +AE + ++K+ L
Sbjct: 220 QLYLYAQGIDNRPVQAERARQQISKETTFDSDFTLAQCQPYWHGLAEKVWQSLEKKQLNA 279
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELP--VSLRLIGLRVTQF 301
R + +KLK +F+ + + + I S +D+++ +LL + +P RLIG+ V Q
Sbjct: 280 RGVNIKLKLKNFQTLQHSKSFKNPIHSQQDLIQVLFLLLNEMHIPENFQFRLIGIGVYQL 339
Query: 302 N 302
Sbjct: 340 Q 340
>gi|304317842|ref|YP_003852987.1| DNA-directed DNA polymerase [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|302779344|gb|ADL69903.1| DNA-directed DNA polymerase [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 378
Score = 162 bits (410), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 107/310 (34%), Positives = 182/310 (58%), Gaps = 19/310 (6%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVF-CKYDPNFMAA--SLDE 64
AR++G+ +AMP ++A+ LCP +F+P F +Y ++++KVF Y+ + S+DE
Sbjct: 47 ARKYGIHSAMPMYMAKTLCPHGVFLPVRFERY---REVSKKVFDILYEITNIVEPLSIDE 103
Query: 65 AYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFV 124
AYLD+T++ + +IA+E++ VY GLT SAGV+ N+ LAK+ SD NKP+G V
Sbjct: 104 AYLDVTDIDKNPE----DIAKEIKEKVYMTTGLTVSAGVSYNKFLAKIASDWNKPDGLMV 159
Query: 125 LPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTA 183
+ D V + L + K+ GIG+ + L+ + GI +++L+ L +F
Sbjct: 160 ISED--MVPDILRPLSVSKVYGIGEKSSERLKKI-GIEKVDDLLKLSEEELTNIFGKYGK 216
Query: 184 DFFLSV-GLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEG 241
+ + + G+ L T R KSI E T T+D LL + L ++++S+++++E
Sbjct: 217 EIYDRIRGIDLRPVET--YRETKSIGKETTLKKDTDDIDLLSKYLKRFSKIISSELKEER 274
Query: 242 LRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK-AELPVSLRLIGLRVTQ 300
L RT+T+K+KT+ F V T++ TL +YI S EDI A+ +LK +++ +RLIGL V+
Sbjct: 275 LYCRTVTVKIKTSHFTVHTKSRTLNEYIDSPEDIYNVATAILKESKISQPVRLIGLSVSN 334
Query: 301 FNEDKVRAPS 310
+ +K++ S
Sbjct: 335 LSRNKIKQLS 344
>gi|187478526|ref|YP_786550.1| DNA polymerase IV [Bordetella avium 197N]
gi|115423112|emb|CAJ49643.1| DNA polymerase IV [Bordetella avium 197N]
Length = 360
Score = 162 bits (409), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 113/314 (35%), Positives = 168/314 (53%), Gaps = 23/314 (7%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFGV +AM A++LCP+ ++VP DF +Y S R++F ++ SLDEAYL
Sbjct: 51 ARRFGVHSAMAVSRAQRLCPDAVYVPPDFNRYRAVSRQVREIFSRHTDLIEPLSLDEAYL 110
Query: 68 DITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP 126
D+T + G+ S +AE +R + E GLT SAGVAPN+ LAK+ SD NKP+G FVL
Sbjct: 111 DVT--VNKLGLPSATAVAEAIRAQIQRETGLTASAGVAPNKFLAKIASDWNKPDGLFVLR 168
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFF 186
+ V+ F+ LP+RK+ G+G+VT+ L + GI+T ++ + A H
Sbjct: 169 PAK--VLEFLQPLPVRKVPGVGRVTQARL-ESLGIHTVGDL---ATCAPAELEHHFGRHG 222
Query: 187 L---SVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLR 243
L + GL + + +S+E TF A L L +A + +K+G
Sbjct: 223 LRLHELARGLDEREVQPDQPLQQVSAENTFERDLRLADLGEALDRLAARVWEQARKKGQL 282
Query: 244 GRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL-LKAELPVS--LRLIGLRVTQ 300
GRT LKLKT F + TR++TL + SS+E++ A L + +LP RL G+ ++
Sbjct: 283 GRTAVLKLKTDRFRLLTRSLTLSQPPSSAEELAAIARRLCARVDLPAHTRYRLAGVGMSN 342
Query: 301 FNEDKVRAPSDPTQ 314
F +DP Q
Sbjct: 343 F--------TDPAQ 348
>gi|319788065|ref|YP_004147540.1| DNA-directed DNA polymerase [Pseudoxanthomonas suwonensis 11-1]
gi|317466577|gb|ADV28309.1| DNA-directed DNA polymerase [Pseudoxanthomonas suwonensis 11-1]
Length = 364
Score = 162 bits (409), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 110/309 (35%), Positives = 166/309 (53%), Gaps = 27/309 (8%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR+AMP A +LCP+ +FVP DF +Y S R++ ++ SLDEAYL
Sbjct: 55 ARKFGVRSAMPALRAERLCPDAVFVPPDFVRYKAVSRQVREIMLEHTDLVEPLSLDEAYL 114
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-P 126
D+T R S +AE +R + E GLT SAGVAPN+ LAK+ SD NKP+G FV+ P
Sbjct: 115 DVT-TPRTGLPSATAVAEAIRAKIRAETGLTASAGVAPNKFLAKIASDWNKPDGLFVIRP 173
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTC--------EEMLQK-GSLLCAV 177
V F++ LP+ +I G+GKV + L + GI T EE+ Q+ GS A+
Sbjct: 174 QH---VERFLTPLPVERIPGVGKVMQGKLAE-LGIATVGELRSRPLEELQQRFGSFGAAL 229
Query: 178 FSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADM 237
+ + G+ + +S+SSE TF+ L + ++AE
Sbjct: 230 YRRAR---------GIDERPVEPDQPVRSVSSEDTFAGDLPLEALEPAIRQLAEKTWNAS 280
Query: 238 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELPVS--LRLI 294
++ G G T+ LKLKTA F + TR++TL++ +S+ ++ A L + LP RL+
Sbjct: 281 RRAGRDGHTVVLKLKTAQFRILTRSLTLERPPASAAELADLACALRERVSLPAETRYRLV 340
Query: 295 GLRVTQFNE 303
G+ ++ F +
Sbjct: 341 GVGLSGFRD 349
>gi|341613645|ref|ZP_08700514.1| DNA polymerase IV [Citromicrobium sp. JLT1363]
Length = 380
Score = 162 bits (409), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 107/302 (35%), Positives = 164/302 (54%), Gaps = 11/302 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGV++AMP A++LCP+LIFV + F Y S+ R +F + SLDEAYL
Sbjct: 67 ARKFGVKSAMPSVTAKRLCPDLIFVKSRFDAYREASEQIRTIFRHHTDLVEPLSLDEAYL 126
Query: 68 DITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL- 125
D+TE + GI + ++A+ +R + + LT SAGV+ N+ LAK+ SD NKP+G V+
Sbjct: 127 DVTE--NKLGIAAATQVAQMIRQEIRAKTQLTASAGVSYNKFLAKLASDQNKPDGMCVIR 184
Query: 126 PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADF 185
P + A F+ +LPIR+ G+G E + + GI T ++ K A S ++
Sbjct: 185 PGEGAA---FVQTLPIRRFHGVGPRGEEKMARL-GIATGADLAAKDRAWLAQHFGSFGEY 240
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYR-KLAEIAEMLSADMQKEGLRG 244
G+ R RKSI ERTFS +A R L EI E++ +++ RG
Sbjct: 241 LYRAARGIDERPVRVNRIRKSIGGERTFSADRHEAEELRTTLDEIVEIVWERIERAQARG 300
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFN 302
RT+TLKLK F++ TRA +L + + + +L++ LP+ +RL+GL ++
Sbjct: 301 RTVTLKLKYNDFQLMTRARSLPRNVDGKVEFAALGHEILESLLPLPKPIRLMGLTLSNLE 360
Query: 303 ED 304
D
Sbjct: 361 RD 362
>gi|365885711|ref|ZP_09424698.1| DNA polymerase IV, devoid of proofreading, damage-inducible protein
P [Bradyrhizobium sp. ORS 375]
gi|365285650|emb|CCD97229.1| DNA polymerase IV, devoid of proofreading, damage-inducible protein
P [Bradyrhizobium sp. ORS 375]
Length = 368
Score = 162 bits (409), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 103/304 (33%), Positives = 166/304 (54%), Gaps = 17/304 (5%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR+AMP A++LCP+LIFV F Y S R +F ++ P SLDEAYL
Sbjct: 61 ARKFGVRSAMPSVTAKRLCPDLIFVKPRFEVYKAISQQIRAIFAEHTPVIEPLSLDEAYL 120
Query: 68 DITEVCRERGISGI----EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF 123
D+T+ + GI +IA ++R + E GL SAG++ N+ LAK+ SD KPNGQ+
Sbjct: 121 DVTD-----NLQGIPLARDIALQIRARIKAETGLNASAGISYNKFLAKLASDHRKPNGQY 175
Query: 124 VLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTA 183
V+ + A F+ LP+ K GIG T + GI+T ++ +
Sbjct: 176 VISPEMGA--AFVEGLPVGKFHGIGPATAAKF-NALGIHTGLDIRNQSLPFLQQHFGKAG 232
Query: 184 DFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEG 241
++ + G+ R RKSI +E TF+ +TE + + +L + + + + G
Sbjct: 233 SYYYWISRGIDHRPVRANRIRKSIGAENTFAADLTEFEPMAA-ELQPLIDKVWRHCEATG 291
Query: 242 LRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVT 299
RGRT+TLK+K A FE+ TR+ ++ +++ ++ + + LL+AELP+ +RL+G+ ++
Sbjct: 292 NRGRTVTLKVKFADFEIITRSRSVVTVVATRAELERLSLALLQAELPLPKPVRLLGVSLS 351
Query: 300 QFNE 303
E
Sbjct: 352 SLQE 355
>gi|365857221|ref|ZP_09397216.1| putative DNA polymerase IV [Acetobacteraceae bacterium AT-5844]
gi|363716526|gb|EHL99927.1| putative DNA polymerase IV [Acetobacteraceae bacterium AT-5844]
Length = 364
Score = 162 bits (409), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 115/321 (35%), Positives = 166/321 (51%), Gaps = 24/321 (7%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGV +AMP AR+ CPEL+FV F Y S +F +Y SLDEAYL
Sbjct: 56 ARKFGVHSAMPSVTARRKCPELVFVKPRFDVYRAVSRQIHDIFARYTTLIQPLSLDEAYL 115
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+TE +RG S IAEE+R ++ E GLT SAGV+ N+ LAK+ SD KP+G FV+
Sbjct: 116 DVTEPLLDRG-SATAIAEEIRAAIRAETGLTASAGVSYNKFLAKMASDHRKPDGLFVI-T 173
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
RM F+ +L I K G+G T + + GI+ ++ Q+ D++
Sbjct: 174 PRMG-PAFVETLAIGKFHGVGPATAAKM-NRLGIHNGHDLRQQTREFLQHHFGKAGDYYF 231
Query: 188 SVGLGLGSTNTPQARFRKSISSERTFS----VTEDK----ALLYRKLAEIAEMLSADMQK 239
+V G+ + R RKS+ +E TF V ED A L+ K+ EI + K
Sbjct: 232 NVARGVDNRPVNPDRTRKSVGAETTFERDLIVWEDAVPAMAPLFSKVWEI-------VAK 284
Query: 240 EGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLR 297
G GRT+T+K+K A F TR+ + ++S E + LL+ P +RL+G+
Sbjct: 285 SGRGGRTVTVKVKYADFRQITRSRSCAPPLASLEMFEEIGLELLRPVFPAPEGVRLLGVT 344
Query: 298 VTQFNEDKVRAPSDPTQKTLT 318
++ F++D S P Q LT
Sbjct: 345 ISNFDDDTR---SHPAQLALT 362
>gi|153939133|ref|YP_001392095.1| DNA polymerase IV [Clostridium botulinum F str. Langeland]
gi|384463083|ref|YP_005675678.1| DNA polymerase IV [Clostridium botulinum F str. 230613]
gi|152935029|gb|ABS40527.1| DNA polymerase IV [Clostridium botulinum F str. Langeland]
gi|295320100|gb|ADG00478.1| DNA polymerase IV [Clostridium botulinum F str. 230613]
Length = 349
Score = 162 bits (409), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 105/303 (34%), Positives = 164/303 (54%), Gaps = 11/303 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++GV +AMP FIA+K CP I+VP +Y S+ K+ K P S+DEAYL
Sbjct: 48 ARKYGVHSAMPVFIAKKRCPFGIYVPGRHERYKEVSNNIFKILYKVTPIIEPVSIDEAYL 107
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
DIT + E I++AE ++ V E GLT S G++ N+ LAK+ SD NKP+G ++
Sbjct: 108 DITNIKEE----PIKVAEHIKKKVKNEMGLTLSVGISYNKFLAKLASDWNKPDGIKIIRQ 163
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCA-VFSHSTADFF 186
D + + + LPI KI GIGK + L ++ GI T E+M + C F + +
Sbjct: 164 D--MIPSILMPLPINKIHGIGKKSVEKLNNI-GIYTVEDMHKLSRDFCIEYFGKFGVEIY 220
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
+ G+ +R RKSI E T +K + + L + + +SA++ K G+
Sbjct: 221 ERI-RGIDYREVKVSRERKSIGKEITLKKDITNKEEMKKYLLDFSNKVSANLYKRNSGGK 279
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHA-SVLLKAELPVSLRLIGLRVTQFNED 304
T+T+K+KT++F+ TR+ T+ YI ++I A +L +RLIGL V+ E+
Sbjct: 280 TVTVKIKTSNFQTHTRSKTVNDYIRDKDEIYNIACDILEHINFKEPIRLIGLTVSNLGEN 339
Query: 305 KVR 307
K++
Sbjct: 340 KIK 342
>gi|453331644|dbj|GAC86558.1| DNA polymerase IV [Gluconobacter thailandicus NBRC 3255]
Length = 379
Score = 161 bits (408), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 107/297 (36%), Positives = 158/297 (53%), Gaps = 7/297 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FGVR+AMP A++LCP+L+FVP F Y S ++F +Y P SLDEAYL
Sbjct: 49 ARPFGVRSAMPSLTAKRLCPDLVFVPARFDVYRTVSAQIHEIFARYTPLIQPLSLDEAYL 108
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T+ G S +AE +RT + +E GLT SAGV+ NR LAK+ SD KP+G FV+
Sbjct: 109 DLTDYLGAYG-SATLVAESIRTDIRKETGLTASAGVSYNRFLAKLASDYRKPDGLFVI-T 166
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
RM F++ L + + GIG T +R GI T ++ + + +A F+
Sbjct: 167 PRMGP-DFVAGLAVDQFHGIGPATARKMR-ALGIETGADLRKLDLPTLTRYFGKSALFYH 224
Query: 188 SVGLGLGSTNTPQARFRKSISSERTF-SVTEDKALLYRKLAEIAEMLSADMQKEGLRGRT 246
+ G+ R RKS+ +E+T+ S +D+ L IA L Q++ + GRT
Sbjct: 225 GISRGIDERPVVVNRERKSLGTEQTYLSDLKDENAARTALGLIATKLWLQAQRKQITGRT 284
Query: 247 LTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS--LRLIGLRVTQF 301
+TLK+K A F TRA TL ++S + L P++ +RL+GL ++
Sbjct: 285 VTLKVKYADFRQITRARTLPASVNSEAVLADVGQSLFTPLFPLTPGVRLLGLTMSSL 341
>gi|445453449|ref|ZP_21445121.1| putative DNA polymerase IV [Acinetobacter baumannii WC-A-92]
gi|444753425|gb|ELW78075.1| putative DNA polymerase IV [Acinetobacter baumannii WC-A-92]
Length = 351
Score = 161 bits (408), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 111/301 (36%), Positives = 166/301 (55%), Gaps = 13/301 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FG+R+AM ARKLCP+++ + +F KY S +F +Y SLDEAYL
Sbjct: 47 AREFGLRSAMSMSQARKLCPQVVIIEPNFEKYRAISAQIHSIFQQYTTLIEPLSLDEAYL 106
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+TE ++ S E+A +R ++ + GLT SAGVAPN+ LAKV SD NKPNG FV+
Sbjct: 107 DVTENLKQIA-SATEVAMHIREDIFRQTGLTASAGVAPNKFLAKVASDWNKPNGLFVIKP 165
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
++A +FI LP++KI G+GKVT+ L+ + ++T + LQK + AV H +
Sbjct: 166 SQVA--SFIQDLPLKKIPGVGKVTQEKLQQL-ELHTLGD-LQK--IEEAVLVHHFGKYGQ 219
Query: 188 SVGL-GLGSTNTP-QA-RFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRG 244
+ L G N P QA R R+ IS E TF A +AE + ++K+ L
Sbjct: 220 QLYLYAQGIDNRPVQAERARQQISKETTFDSDFTLAQCQPYWHGLAEKVWQSLEKKQLNA 279
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELP--VSLRLIGLRVTQF 301
R + +KLK +F+ + + + I S +D+++ +LL + +P RLIG+ V Q
Sbjct: 280 RGVNIKLKLKNFQTLQHSKSFKNPIHSQQDLIQVLFLLLNEMHIPENFQFRLIGIGVYQL 339
Query: 302 N 302
Sbjct: 340 Q 340
>gi|414342328|ref|YP_006983849.1| DNA polymerase IV [Gluconobacter oxydans H24]
gi|411027663|gb|AFW00918.1| DNA polymerase IV [Gluconobacter oxydans H24]
Length = 379
Score = 161 bits (408), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 116/315 (36%), Positives = 164/315 (52%), Gaps = 11/315 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FGVR+AMP A++LCP+L+FVP F Y S ++F +Y P SLDEAYL
Sbjct: 49 ARPFGVRSAMPSLKAKRLCPDLVFVPARFDVYRTVSAQIHEIFARYTPLIQPLSLDEAYL 108
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T+ G S +AE +R + +E GLT SAGV+ NR LAK+ SD KP+G FV+
Sbjct: 109 DLTDYLGAYG-SATLVAESIRADIRKETGLTASAGVSYNRFLAKLASDYRKPDGLFVI-T 166
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL--LCAVFSHSTADF 185
RM F++ L + + GIG T +R GI T + L+K L L F S A F
Sbjct: 167 PRMGP-DFVAGLAVDQFHGIGPATARKMR-ALGIETGAD-LRKLDLPTLTRHFGKS-ALF 222
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTF-SVTEDKALLYRKLAEIAEMLSADMQKEGLRG 244
+ + G+ R RKS+ +E+T+ S +D+ L IA L Q++ + G
Sbjct: 223 YHGISRGIDERPVVVNRERKSLGTEQTYLSDLKDENAARAALGLIATKLWLQAQRKQITG 282
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS--LRLIGLRVTQFN 302
RT+TLK+K A F TRA TL ++S + L P++ +RL+GL ++
Sbjct: 283 RTVTLKVKYADFRQITRARTLPASVNSEAVLADVGQSLFTPLFPLTPGVRLLGLTMSSLA 342
Query: 303 EDKVRAPSDPTQKTL 317
P P Q L
Sbjct: 343 GTDDATPDSPPQMQL 357
>gi|417548493|ref|ZP_12199574.1| putative DNA polymerase IV [Acinetobacter baumannii Naval-18]
gi|417566604|ref|ZP_12217476.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC143]
gi|395552276|gb|EJG18284.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC143]
gi|400388792|gb|EJP51864.1| putative DNA polymerase IV [Acinetobacter baumannii Naval-18]
Length = 351
Score = 161 bits (408), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 111/301 (36%), Positives = 166/301 (55%), Gaps = 13/301 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FG+R+AM ARKLCP+++ + +F KY S +F +Y SLDEAYL
Sbjct: 47 AREFGLRSAMSMSQARKLCPQVVIIEPNFEKYRAISAQIHSIFQQYTTLIEPLSLDEAYL 106
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+TE ++ S E+A +R ++ + GLT SAGVAPN+ LAKV SD NKPNG FV+
Sbjct: 107 DVTENLKQIA-SATEVAMHIREDIFRQTGLTASAGVAPNKFLAKVASDWNKPNGLFVIKP 165
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
++A +FI LP++KI G+GKVT+ L+ + ++T + LQK + AV H +
Sbjct: 166 SQVA--SFIQGLPLKKIPGVGKVTQEKLQQL-ELHTLGD-LQK--IEEAVLVHHFGKYGQ 219
Query: 188 SVGL-GLGSTNTP-QA-RFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRG 244
+ L G N P QA R R+ IS E TF A +AE + ++K+ L
Sbjct: 220 QLYLYAQGIDNRPVQAERARQQISKETTFDSDFTLAQCQPYWHGLAEKVWQSLEKKQLNA 279
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELP--VSLRLIGLRVTQF 301
R + +KLK +F+ + + + I S +D+++ +LL + +P RLIG+ V Q
Sbjct: 280 RGVNIKLKLKNFQTLQHSKSFKNPIHSQQDLIQVLFLLLNEMHIPENFQFRLIGIGVYQL 339
Query: 302 N 302
Sbjct: 340 Q 340
>gi|410465504|ref|ZP_11318750.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Desulfovibrio magneticus str. Maddingley MBC34]
gi|409981467|gb|EKO38032.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Desulfovibrio magneticus str. Maddingley MBC34]
Length = 394
Score = 161 bits (408), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 106/298 (35%), Positives = 161/298 (54%), Gaps = 6/298 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR +GVR+AMP A++ CP +F+P + +Y+ S L ++ P AS+DEAY+
Sbjct: 46 ARVYGVRSAMPVSEAKRRCPHGVFLPGNRRRYSEVSRLVMATLGRFSPLVEPASIDEAYV 105
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
DIT C+ +A ++ ++ E GL CS GVAP + +AK+ SD +KP+G ++
Sbjct: 106 DITG-CQTLFGPPETMARAMKAAIREATGLPCSVGVAPVKFIAKIASDYDKPDGLTIVTP 164
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
+ + F+ LP+ KI G+GK E L + GI ++ + A
Sbjct: 165 E--TALDFLGPLPVSKIPGVGKRAEETLARL-GIRLVADIRRHEPEFLARHCGKWGLDLY 221
Query: 188 SVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRT 246
+ GS R KS+S+E TF T D+ +L L + AE + ++++EGLRGRT
Sbjct: 222 NKAHARGSAVVSTDREAKSVSAENTFEADTADRDILAAWLLKQAERVGRELRQEGLRGRT 281
Query: 247 LTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFNE 303
+T+KLK +F TR+ TL + +S I + A LL AE LP LRLIG+ V+QF E
Sbjct: 282 VTIKLKFNTFRQITRSRTLAEPTASDSAIFETARALLNAEPLPNPLRLIGVGVSQFGE 339
>gi|169797618|ref|YP_001715411.1| DNA polymerase IV [Acinetobacter baumannii AYE]
gi|184156526|ref|YP_001844865.1| DNA polymerase IV [Acinetobacter baumannii ACICU]
gi|215484969|ref|YP_002327210.1| DNA polymerase IV(Pol IV) [Acinetobacter baumannii AB307-0294]
gi|239502137|ref|ZP_04661447.1| DNA polymerase IV(Pol IV) [Acinetobacter baumannii AB900]
gi|260556426|ref|ZP_05828645.1| nucleotidyltransferase/DNA polymerase [Acinetobacter baumannii ATCC
19606 = CIP 70.34]
gi|301510902|ref|ZP_07236139.1| DNA polymerase IV [Acinetobacter baumannii AB058]
gi|332851008|ref|ZP_08433143.1| DNA polymerase IV [Acinetobacter baumannii 6013150]
gi|332865620|ref|ZP_08436453.1| DNA polymerase IV [Acinetobacter baumannii 6013113]
gi|332875005|ref|ZP_08442852.1| DNA polymerase IV [Acinetobacter baumannii 6014059]
gi|384130174|ref|YP_005512786.1| DNA polymerase IV [Acinetobacter baumannii 1656-2]
gi|403673120|ref|ZP_10935433.1| DNA polymerase IV [Acinetobacter sp. NCTC 10304]
gi|417554988|ref|ZP_12206057.1| putative DNA polymerase IV [Acinetobacter baumannii Naval-81]
gi|417563117|ref|ZP_12213996.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC137]
gi|417577028|ref|ZP_12227873.1| DNA polymerase IV [Acinetobacter baumannii Naval-17]
gi|417870856|ref|ZP_12515804.1| DNA polymerase IV [Acinetobacter baumannii ABNIH1]
gi|417880013|ref|ZP_12524558.1| DNA polymerase IV [Acinetobacter baumannii ABNIH3]
gi|417884379|ref|ZP_12528580.1| DNA polymerase IV [Acinetobacter baumannii ABNIH4]
gi|421201172|ref|ZP_15658331.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC109]
gi|421456702|ref|ZP_15906040.1| putative DNA polymerase IV [Acinetobacter baumannii IS-123]
gi|421623016|ref|ZP_16063906.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC074]
gi|421627446|ref|ZP_16068256.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC098]
gi|421629411|ref|ZP_16070144.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC180]
gi|421634758|ref|ZP_16075369.1| putative DNA polymerase IV [Acinetobacter baumannii Naval-13]
gi|421644682|ref|ZP_16085159.1| putative DNA polymerase IV [Acinetobacter baumannii IS-235]
gi|421647102|ref|ZP_16087533.1| putative DNA polymerase IV [Acinetobacter baumannii IS-251]
gi|421649774|ref|ZP_16090157.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC0162]
gi|421658940|ref|ZP_16099167.1| putative DNA polymerase IV [Acinetobacter baumannii Naval-83]
gi|421662434|ref|ZP_16102599.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC110]
gi|421673404|ref|ZP_16113344.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC065]
gi|421680541|ref|ZP_16120395.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC111]
gi|421687638|ref|ZP_16127358.1| putative DNA polymerase IV [Acinetobacter baumannii IS-143]
gi|421689691|ref|ZP_16129365.1| putative DNA polymerase IV [Acinetobacter baumannii IS-116]
gi|421695286|ref|ZP_16134895.1| putative DNA polymerase IV [Acinetobacter baumannii WC-692]
gi|421699297|ref|ZP_16138830.1| putative DNA polymerase IV [Acinetobacter baumannii IS-58]
gi|421791630|ref|ZP_16227802.1| putative DNA polymerase IV [Acinetobacter baumannii Naval-2]
gi|421796731|ref|ZP_16232787.1| putative DNA polymerase IV [Acinetobacter baumannii Naval-21]
gi|421802523|ref|ZP_16238472.1| putative DNA polymerase IV [Acinetobacter baumannii WC-A-694]
gi|421806537|ref|ZP_16242400.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC035]
gi|424061480|ref|ZP_17798969.1| DNA polymerase IV [Acinetobacter baumannii Ab33333]
gi|424064969|ref|ZP_17802453.1| DNA polymerase IV [Acinetobacter baumannii Ab44444]
gi|425749660|ref|ZP_18867631.1| putative DNA polymerase IV [Acinetobacter baumannii WC-348]
gi|445397472|ref|ZP_21429297.1| putative DNA polymerase IV [Acinetobacter baumannii Naval-57]
gi|445462986|ref|ZP_21449183.1| DNA polymerase IV [Acinetobacter baumannii OIFC338]
gi|445480792|ref|ZP_21455703.1| DNA polymerase IV [Acinetobacter baumannii Naval-78]
gi|445487709|ref|ZP_21457924.1| putative DNA polymerase IV [Acinetobacter baumannii AA-014]
gi|169150545|emb|CAM88453.1| DNA polymerase IV, devoid of proofreading, damage-inducible protein
P [Acinetobacter baumannii AYE]
gi|183208120|gb|ACC55518.1| Nucleotidyltransferase/DNA polymerase [Acinetobacter baumannii
ACICU]
gi|193076069|gb|ABO10667.2| DNA polymerase IV [Acinetobacter baumannii ATCC 17978]
gi|213988136|gb|ACJ58435.1| DNA polymerase IV(Pol IV) [Acinetobacter baumannii AB307-0294]
gi|260410481|gb|EEX03780.1| nucleotidyltransferase/DNA polymerase [Acinetobacter baumannii ATCC
19606 = CIP 70.34]
gi|322506394|gb|ADX01848.1| DNA polymerase IV [Acinetobacter baumannii 1656-2]
gi|332730291|gb|EGJ61615.1| DNA polymerase IV [Acinetobacter baumannii 6013150]
gi|332735209|gb|EGJ66287.1| DNA polymerase IV [Acinetobacter baumannii 6013113]
gi|332736815|gb|EGJ67795.1| DNA polymerase IV [Acinetobacter baumannii 6014059]
gi|342226754|gb|EGT91714.1| DNA polymerase IV [Acinetobacter baumannii ABNIH1]
gi|342226802|gb|EGT91760.1| DNA polymerase IV [Acinetobacter baumannii ABNIH3]
gi|342234417|gb|EGT99076.1| DNA polymerase IV [Acinetobacter baumannii ABNIH4]
gi|395525699|gb|EJG13788.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC137]
gi|395563204|gb|EJG24857.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC109]
gi|395570249|gb|EJG30911.1| DNA polymerase IV [Acinetobacter baumannii Naval-17]
gi|400210406|gb|EJO41375.1| putative DNA polymerase IV [Acinetobacter baumannii IS-123]
gi|400391405|gb|EJP58452.1| putative DNA polymerase IV [Acinetobacter baumannii Naval-81]
gi|404564254|gb|EKA69436.1| putative DNA polymerase IV [Acinetobacter baumannii IS-143]
gi|404565597|gb|EKA70761.1| putative DNA polymerase IV [Acinetobacter baumannii IS-116]
gi|404566300|gb|EKA71456.1| putative DNA polymerase IV [Acinetobacter baumannii WC-692]
gi|404571691|gb|EKA76742.1| putative DNA polymerase IV [Acinetobacter baumannii IS-58]
gi|404666357|gb|EKB34304.1| DNA polymerase IV [Acinetobacter baumannii Ab33333]
gi|404673052|gb|EKB40856.1| DNA polymerase IV [Acinetobacter baumannii Ab44444]
gi|408504675|gb|EKK06416.1| putative DNA polymerase IV [Acinetobacter baumannii IS-235]
gi|408512515|gb|EKK14156.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC0162]
gi|408516896|gb|EKK18455.1| putative DNA polymerase IV [Acinetobacter baumannii IS-251]
gi|408693128|gb|EKL38740.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC098]
gi|408693899|gb|EKL39494.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC074]
gi|408701548|gb|EKL46975.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC180]
gi|408703781|gb|EKL49163.1| putative DNA polymerase IV [Acinetobacter baumannii Naval-13]
gi|408709114|gb|EKL54373.1| putative DNA polymerase IV [Acinetobacter baumannii Naval-83]
gi|408714774|gb|EKL59907.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC110]
gi|410386265|gb|EKP38738.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC065]
gi|410389456|gb|EKP41870.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC111]
gi|410398429|gb|EKP50648.1| putative DNA polymerase IV [Acinetobacter baumannii Naval-21]
gi|410402559|gb|EKP54674.1| putative DNA polymerase IV [Acinetobacter baumannii Naval-2]
gi|410414716|gb|EKP66512.1| putative DNA polymerase IV [Acinetobacter baumannii WC-A-694]
gi|410417717|gb|EKP69486.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC035]
gi|425488001|gb|EKU54342.1| putative DNA polymerase IV [Acinetobacter baumannii WC-348]
gi|444768127|gb|ELW92346.1| putative DNA polymerase IV [Acinetobacter baumannii AA-014]
gi|444771115|gb|ELW95248.1| DNA polymerase IV [Acinetobacter baumannii Naval-78]
gi|444780511|gb|ELX04458.1| DNA polymerase IV [Acinetobacter baumannii OIFC338]
gi|444784058|gb|ELX07889.1| putative DNA polymerase IV [Acinetobacter baumannii Naval-57]
gi|452954105|gb|EME59509.1| DNA polymerase IV [Acinetobacter baumannii MSP4-16]
Length = 351
Score = 161 bits (408), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 111/301 (36%), Positives = 166/301 (55%), Gaps = 13/301 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FG+R+AM ARKLCP+++ + +F KY S +F +Y SLDEAYL
Sbjct: 47 AREFGLRSAMSMSQARKLCPQVVIIEPNFEKYRAISAQIHSIFQQYTTLIEPLSLDEAYL 106
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+TE ++ S E+A +R ++ + GLT SAGVAPN+ LAKV SD NKPNG FV+
Sbjct: 107 DVTENLKQIA-SATEVAMHIREDIFRQTGLTASAGVAPNKFLAKVASDWNKPNGLFVIKP 165
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
++A +FI LP++KI G+GKVT+ L+ + ++T + LQK + AV H +
Sbjct: 166 SQVA--SFIQDLPLKKIPGVGKVTQEKLQQL-ELHTLGD-LQK--IEEAVLVHHFGKYGQ 219
Query: 188 SVGL-GLGSTNTP-QA-RFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRG 244
+ L G N P QA R R+ IS E TF A +AE + ++K+ L
Sbjct: 220 QLYLYAQGIDNRPVQAERARQQISKETTFDSDFTLAQCQPYWHGLAEKVWQSLEKKQLNA 279
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELP--VSLRLIGLRVTQF 301
R + +KLK +F+ + + + I S +D+++ +LL + +P RLIG+ V Q
Sbjct: 280 RGVNIKLKLKNFQTLQHSKSFKNPIHSQQDLIQVLFLLLNEMHIPENFQFRLIGIGVYQL 339
Query: 302 N 302
Sbjct: 340 Q 340
>gi|440733826|ref|ZP_20913497.1| DNA polymerase IV [Xanthomonas translucens DAR61454]
gi|440358515|gb|ELP95866.1| DNA polymerase IV [Xanthomonas translucens DAR61454]
Length = 353
Score = 161 bits (408), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 115/305 (37%), Positives = 167/305 (54%), Gaps = 19/305 (6%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FG+R+AMP A +LCP+ IFVP DF +Y S R++F ++ SLDEAYL
Sbjct: 47 ARVFGIRSAMPALRAERLCPDAIFVPPDFARYKAVSRQVREIFQRHTDLIEPLSLDEAYL 106
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-P 126
D+TE E + EIA+ +R + EE LT SAG+APN+ LAK+ SD KP+GQFV+ P
Sbjct: 107 DVTEPKGELA-TATEIAQTIRAQIREETALTASAGIAPNKFLAKIASDWRKPDGQFVIRP 165
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFF 186
+ V F++ LP+ K+ G+GKV + L ++ GI T ++ G + S
Sbjct: 166 HQ---VDAFLTPLPVSKVPGVGKVMQAKLAEL-GIVTVGDLRTHGEVELEARFGSFGLRL 221
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL-----LYRKLAEIAEMLSADMQKEG 241
G+ + +SISSE TF+ ED AL R LAE + +A + E
Sbjct: 222 YQRARGIDQRPVEADQQVQSISSEDTFA--EDLALDALEPAIRLLAE--KTWTATRRTER 277
Query: 242 LRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL-LKAELPVS--LRLIGLRV 298
+ RT+ LKLKTA F + TR+ T ++ S + + A L + +LP S RL+G+ +
Sbjct: 278 I-ARTVVLKLKTAQFRILTRSFTPEQPPDSLQALTDIALALRQRVDLPASTRYRLVGVGL 336
Query: 299 TQFNE 303
F+E
Sbjct: 337 AGFHE 341
>gi|198284367|ref|YP_002220688.1| DNA-directed DNA polymerase [Acidithiobacillus ferrooxidans ATCC
53993]
gi|218666878|ref|YP_002427031.1| DNA polymerase IV [Acidithiobacillus ferrooxidans ATCC 23270]
gi|198248888|gb|ACH84481.1| DNA-directed DNA polymerase [Acidithiobacillus ferrooxidans ATCC
53993]
gi|218519091|gb|ACK79677.1| DNA polymerase IV [Acidithiobacillus ferrooxidans ATCC 23270]
Length = 378
Score = 161 bits (408), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 109/300 (36%), Positives = 159/300 (53%), Gaps = 13/300 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFG+ +AM AR LCP+ +FV Y S + Y P SLDEA+L
Sbjct: 59 ARRFGIHSAMTAARARSLCPQAVFVRPRMDAYREASRQVMGILRCYTPLVEPLSLDEAFL 118
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T + G+ + IA E+R + E GLT SAGV+ N+LLAK+ S+ KPNG FV+P
Sbjct: 119 DVTAATAD-GVLAVRIAREIRARIERETGLTASAGVSYNKLLAKLASEWRKPNGLFVVPP 177
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFF 186
+ + F++ LP+ K+ G+G T L GI+T ++ +L A F + +F
Sbjct: 178 EHG--LAFLAPLPVGKLHGVGPATVKKL-SAMGIHTVLDLRNASREVLIAQFGKA-GLWF 233
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLRGR 245
V G+ S +R RKS+ ERTF ED ++ L ++A +SA +Q GL GR
Sbjct: 234 YEVARGIDSRPVQTSRQRKSVGYERTFPQNLEDPKVMLSTLRQMAGQVSARLQALGLAGR 293
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSL------RLIGLRVT 299
T+++K + FE TRA T + I +E I+ LL +P SL RL+G+ V+
Sbjct: 294 TVSIKARFPDFETVTRAHTDAQAIWRTEAIIACLPGLLAKAIPASLPMHASVRLLGVTVS 353
>gi|333897923|ref|YP_004471797.1| DNA polymerase IV [Thermoanaerobacterium xylanolyticum LX-11]
gi|333113188|gb|AEF18125.1| DNA polymerase IV [Thermoanaerobacterium xylanolyticum LX-11]
Length = 379
Score = 161 bits (408), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 104/306 (33%), Positives = 172/306 (56%), Gaps = 11/306 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++GV +AMP ++A+ LCP IF+P F +Y S+ + + S+DEAYL
Sbjct: 48 ARKYGVHSAMPMYMAKTLCPHGIFLPVRFQRYREVSEKVFDILYEVTDIVEPLSIDEAYL 107
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T++ + +IA+E++ V+ GLT SAGV+ N+ LAK+ SD NKP+G ++
Sbjct: 108 DVTDIDKNPE----DIAKEIKEKVHMVTGLTVSAGVSYNKFLAKIASDWNKPDGLMIITE 163
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHSTADFF 186
D V + L + K+ GIGK + L+ + G+ +++L+ L +F + +
Sbjct: 164 D--MVPDILRPLSVSKVYGIGKKSSERLKKI-GVEKVDDLLKLSQDELTNIFGKYGKEIY 220
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
+ G+ S R KSI E T T D LL + L A+++S++++ E L R
Sbjct: 221 DRIR-GIDSRPVETYRETKSIGKETTLKKDTSDADLLLKYLRGFADIVSSELKGERLYCR 279
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK-AELPVSLRLIGLRVTQFNED 304
T+T+K+KT++F + TR+ TL +YI SS+DI A + K A++ +RLIGL V+ +
Sbjct: 280 TVTVKIKTSNFTLHTRSRTLNEYIDSSDDIYSVAEAIFKEAKMTQPVRLIGLSVSNLSAT 339
Query: 305 KVRAPS 310
K++ S
Sbjct: 340 KIKQLS 345
>gi|422320499|ref|ZP_16401558.1| DNA polymerase IV [Achromobacter xylosoxidans C54]
gi|317404723|gb|EFV85111.1| DNA polymerase IV [Achromobacter xylosoxidans C54]
Length = 360
Score = 161 bits (408), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 102/302 (33%), Positives = 164/302 (54%), Gaps = 9/302 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFGV +AM A++LCP+ ++VP DF +Y S R++F ++ SLDEAYL
Sbjct: 51 ARRFGVHSAMSAVRAQRLCPQAVYVPPDFNRYREVSRQIRQIFGRHTDLIEPLSLDEAYL 110
Query: 68 DITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP 126
D+T + G+ S E+A+ +R + E GLT SAGVAPN+ LAK+ SD NKP+GQ+V+
Sbjct: 111 DVT--VNKLGLPSATEVAQVIRQQIRAETGLTASAGVAPNKFLAKIASDWNKPDGQYVIR 168
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFF 186
R V+ F+ LP+RK+ G+GKV + L + GI+T ++ + +
Sbjct: 169 PSR--VLEFLQPLPVRKVPGVGKVMQARL-EQLGIHTVGDLATHAAQELEHYFGRYGRRL 225
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRT 246
+ G+ + + +S+E TFS + L +A+ + + K+G GRT
Sbjct: 226 YELARGIDDREVQTDQPLQQVSAETTFSEDVRLEAVGEALDRMADKVWSQALKKGALGRT 285
Query: 247 LTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELPVS--LRLIGLRVTQFNE 303
+ LKLKT F + TR+ T +S+ ++ A +L + +LP RL G+ ++ F +
Sbjct: 286 VVLKLKTDRFRILTRSQTNPNPPASAAELATMARLLCERVDLPAQTLYRLAGVGMSNFAD 345
Query: 304 DK 305
+
Sbjct: 346 PQ 347
>gi|421862800|ref|ZP_16294504.1| unnamed protein product [Neisseria lactamica Y92-1009]
gi|309379710|emb|CBX21699.1| unnamed protein product [Neisseria lactamica Y92-1009]
Length = 352
Score = 161 bits (408), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 108/300 (36%), Positives = 165/300 (55%), Gaps = 19/300 (6%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG+ +AM A++LCP+ ++VP F Y S VF +Y SLDEAYL
Sbjct: 49 ARQFGLHSAMSVATAKRLCPQAVYVPPHFDLYRQVSAQIHAVFRRYTDLIEPLSLDEAYL 108
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T + +G ++A+E+R +++ E GLT SAG+APN+ LAK+ SD KPNGQFVLP
Sbjct: 109 DVTRNFKNIPYAG-DVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPP 167
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADF 185
+ VM F+ +LP+ KI G+GKVT ++ + G+ T ++ ++G LL +H
Sbjct: 168 HK--VMAFLETLPLGKIPGVGKVTLKKMQSL-GMQTAGDLRRFERGELL----NHFGRYG 220
Query: 186 FLSVGLGLGSTNTP--QARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEG 241
+ L G+ P R R IS+E ++ ED L L +AE L + ++
Sbjct: 221 YRLYDLARGTDERPVEAERERLQISTE--ITLPEDLPLEQAAGHLPHLAEDLWRQITRKN 278
Query: 242 LRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV---SLRLIGLRV 298
+ +++TLKLKT F + TR +T + +L+ A +L K P + RLIG+ V
Sbjct: 279 VEAQSVTLKLKTYDFRIITRTLTYSSVLPDCASLLQAAQMLTKRVPPQTEDAFRLIGIGV 338
>gi|87200669|ref|YP_497926.1| DNA polymerase IV [Novosphingobium aromaticivorans DSM 12444]
gi|87136350|gb|ABD27092.1| DNA-directed DNA polymerase [Novosphingobium aromaticivorans DSM
12444]
Length = 378
Score = 161 bits (407), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 110/298 (36%), Positives = 159/298 (53%), Gaps = 9/298 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR+AMP A LCP+LIF F Y S R +F Y P+ SLDEAYL
Sbjct: 63 ARKFGVRSAMPSARAIVLCPDLIFCRPRFDVYRSVSQQIRAIFLDYTPHVEPLSLDEAYL 122
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T+ R G S IAE +R + + GLT SAGV+ N+ LAK+ SD NKP+G V+
Sbjct: 123 DVTDDVRGIG-SATRIAELIRRRIKADTGLTASAGVSYNKFLAKIASDQNKPDGMCVIRP 181
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
A F++SLP+R+ GIG + GI T ++ + S AD+
Sbjct: 182 GEGA--QFVASLPVRRFHGIGPRGAEKM-AALGIETGADLRARDLPFLRQHFGSLADYLY 238
Query: 188 SVGLGLGSTNTPQARFRKSISSERTF--SVTEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
G+ R RKS+ +ERTF ++ A L L I E++ +++ G GR
Sbjct: 239 RAVRGIDLRQVKADRPRKSVGAERTFERDISSGPA-LRETLERILEIVWDRIERSGASGR 297
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS--LRLIGLRVTQF 301
T+TLK+K F TRA +L + I+ E+ + + LL A+LP++ +RL+GL ++
Sbjct: 298 TVTLKMKFNDFTPITRARSLPRPIADKEEFARLSRELLDAQLPLAKPIRLMGLTLSAL 355
>gi|384426413|ref|YP_005635770.1| ImpB-MucB-SamB family [Xanthomonas campestris pv. raphani 756C]
gi|341935513|gb|AEL05652.1| ImpB-MucB-SamB family [Xanthomonas campestris pv. raphani 756C]
Length = 359
Score = 161 bits (407), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 115/308 (37%), Positives = 173/308 (56%), Gaps = 15/308 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FG+R+AMP A +LCP+ +FVP DF +Y S R++F ++ SLDEAYL
Sbjct: 47 ARTFGIRSAMPAVRAERLCPDAVFVPPDFARYKAVSRQVREIFHRHTDLVEPLSLDEAYL 106
Query: 68 DITEVCRERGIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP 126
D+TE + G+ EIA+ +RT + EE LT SAG+APN+ LAK+ SD KP+GQFV+
Sbjct: 107 DVTEA--KTGMQLATEIAQLIRTQIREETQLTASAGIAPNKFLAKIASDWRKPDGQFVIA 164
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM-LQKGSLLCAVFSHSTADF 185
R V F+ LP+ +I G+GKV + L GI T ++ L+ L A F S
Sbjct: 165 PSR--VDAFLLPLPVNRIPGVGKVMDGKL-AALGIVTVSDLRLRPLEELHAHFG-SFGQS 220
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLR 243
G+ + +S+SSE TFS ED AL L + +AE ++
Sbjct: 221 LYRRARGIDERPVEPDQEVQSVSSEDTFS--EDLALDALDPHIQRLAEKTWHATRRTERI 278
Query: 244 GRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELP--VSLRLIGLRVTQ 300
GRT+ LKLKT++F + TR+ T ++ +S + ++ A L + ELP RL+G+ ++
Sbjct: 279 GRTVVLKLKTSNFRILTRSYTPEQPPASLQGLVDIALGLTRRVELPPETRYRLVGVGLSG 338
Query: 301 FNEDKVRA 308
F++ +++A
Sbjct: 339 FSDPELQA 346
>gi|21230058|ref|NP_635975.1| DNA polymerase IV [Xanthomonas campestris pv. campestris str. ATCC
33913]
gi|66769949|ref|YP_244711.1| DNA polymerase IV [Xanthomonas campestris pv. campestris str. 8004]
gi|188993162|ref|YP_001905172.1| DNA polymerase IV [Xanthomonas campestris pv. campestris str. B100]
gi|24211642|sp|Q8PCW8.1|DPO4_XANCP RecName: Full=DNA polymerase IV; Short=Pol IV
gi|81304097|sp|Q4UQI2.1|DPO4_XANC8 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|21111581|gb|AAM39899.1| DNA polymerase IV [Xanthomonas campestris pv. campestris str. ATCC
33913]
gi|66575281|gb|AAY50691.1| DNA polymerase IV [Xanthomonas campestris pv. campestris str. 8004]
gi|167734922|emb|CAP53134.1| DNA polymerase IV [Xanthomonas campestris pv. campestris]
Length = 359
Score = 161 bits (407), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 115/308 (37%), Positives = 173/308 (56%), Gaps = 15/308 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FG+R+AMP A +LCP+ +FVP DF +Y S R++F ++ SLDEAYL
Sbjct: 47 ARTFGIRSAMPAVRAERLCPDAVFVPPDFARYKAVSRQVREIFHRHTDLVEPLSLDEAYL 106
Query: 68 DITEVCRERGIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP 126
D+TE + G+ EIA+ +RT + EE LT SAG+APN+ LAK+ SD KP+GQFV+
Sbjct: 107 DVTEA--KTGMQLATEIAQLIRTQIREETQLTASAGIAPNKFLAKIASDWRKPDGQFVIA 164
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM-LQKGSLLCAVFSHSTADF 185
R V F+ LP+ +I G+GKV + L GI T ++ L+ L A F S
Sbjct: 165 PSR--VDAFLLPLPVNRIPGVGKVMDGKL-AALGIVTVSDLRLRPLEELQAHFG-SFGQS 220
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLR 243
G+ + +S+SSE TFS ED AL L + +AE ++
Sbjct: 221 LYRRARGIDERPVEPDQEVQSVSSEDTFS--EDLALDALDPHIQRLAEKTWHATRRTERI 278
Query: 244 GRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELP--VSLRLIGLRVTQ 300
GRT+ LKLKT++F + TR+ T ++ +S + ++ A L + ELP RL+G+ ++
Sbjct: 279 GRTVVLKLKTSNFRILTRSYTPEQPPASLQGLVDIALGLTRRVELPPETRYRLVGVGLSG 338
Query: 301 FNEDKVRA 308
F++ +++A
Sbjct: 339 FSDPELQA 346
>gi|169596118|ref|XP_001791483.1| hypothetical protein SNOG_00811 [Phaeosphaeria nodorum SN15]
gi|160701232|gb|EAT92306.2| hypothetical protein SNOG_00811 [Phaeosphaeria nodorum SN15]
Length = 407
Score = 161 bits (407), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 89/226 (39%), Positives = 131/226 (57%), Gaps = 7/226 (3%)
Query: 82 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 141
E +LR V+E A +T SAG+A N LAK+CS+ NKPNGQF LP+DR +M F+ ++P
Sbjct: 5 EAVSQLRADVHERAKITVSAGIAANAKLAKICSNKNKPNGQFFLPSDRQTIMEFMKTMPT 64
Query: 142 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQA 201
RK+ GIG+V E L D G+ TC ++ + L +F F + LGLG T +A
Sbjct: 65 RKVNGIGRVFEREL-DAIGVKTCGDIYAHRAYLPKLFGQKAFQFLMQCYLGLGRTKIQRA 123
Query: 202 R--FRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVR 259
RKS+ +E TF + L KL IAE L D+++ +GRTL +K+K ++EV
Sbjct: 124 EDYERKSVGTETTFKEMQSPDALRDKLRYIAEELEGDLKRTEYKGRTLCIKIKLHTYEVH 183
Query: 260 TRAVTLQKYISSSEDILKHASVLLK---AELP-VSLRLIGLRVTQF 301
TR +T + ++D+ K+ +L+ E+P + LRL+GLR T
Sbjct: 184 TRQMTPPFAVHRADDLYKYGLPMLEKLMKEIPNMRLRLMGLRATHL 229
>gi|170759086|ref|YP_001788136.1| DNA polymerase IV [Clostridium botulinum A3 str. Loch Maree]
gi|169406075|gb|ACA54486.1| DNA polymerase IV [Clostridium botulinum A3 str. Loch Maree]
Length = 349
Score = 161 bits (407), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 104/303 (34%), Positives = 164/303 (54%), Gaps = 11/303 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++GV +AMP FIA+K CP I+VP +Y S+ K+ K P S+DEAYL
Sbjct: 48 ARKYGVHSAMPVFIAKKRCPFGIYVPGRHERYKEVSNSIFKILYKITPIIEPVSIDEAYL 107
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
DIT + E I++AE ++ V +E GLT S G++ N+ LAK+ S+ NKP+G ++
Sbjct: 108 DITNIKEE----SIKVAEHIKKRVKDEMGLTLSVGISYNKFLAKLASEWNKPDGIKIIRQ 163
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCA-VFSHSTADFF 186
D + + + LPI KI GIGK + L ++ GI T E+M + C F + +
Sbjct: 164 D--MIPSILMPLPINKIHGIGKKSVEKLNNI-GIYTVEDMHKLSRDFCIEYFGKFGVEIY 220
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
+ G+ +R RKSI E T DK + + L + + +S ++ K G+
Sbjct: 221 ERI-RGIDYREVKVSRERKSIGKEITLKKDITDKEEMKKYLLDFSNKVSTNLYKRNSGGK 279
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHA-SVLLKAELPVSLRLIGLRVTQFNED 304
T+T+K+KT++F+ TR+ T+ YI ++I A +L +RLIGL V+ E+
Sbjct: 280 TVTVKIKTSNFQTHTRSKTVDDYIRDKDEIYNIACDILEHINFKEPIRLIGLTVSNLGEN 339
Query: 305 KVR 307
K++
Sbjct: 340 KIK 342
>gi|326389369|ref|ZP_08210937.1| DNA-directed DNA polymerase [Thermoanaerobacter ethanolicus JW 200]
gi|392939169|ref|ZP_10304813.1| LOW QUALITY PROTEIN: nucleotidyltransferase/DNA polymerase involved
in DNA repair [Thermoanaerobacter siderophilus SR4]
gi|325994732|gb|EGD53156.1| DNA-directed DNA polymerase [Thermoanaerobacter ethanolicus JW 200]
gi|392290919|gb|EIV99362.1| LOW QUALITY PROTEIN: nucleotidyltransferase/DNA polymerase involved
in DNA repair [Thermoanaerobacter siderophilus SR4]
Length = 389
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 107/304 (35%), Positives = 165/304 (54%), Gaps = 23/304 (7%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++G+ +AMP ++ARKLCP IF+ +Y S + P S+DEAYL
Sbjct: 48 ARKYGIHSAMPMYMARKLCPHGIFLSVRRKRYEEVSAQIFNILYSITPLVEPVSIDEAYL 107
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T + + I IA E++ V E GLT SAGV+ N+ LAK+ SD NKP+G V+
Sbjct: 108 DVTYIDKNPEI----IALEIKKKVKETTGLTISAGVSYNKFLAKLASDWNKPDGFMVITE 163
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
D + + LP+ K+ GIG+ +E L+ GINT +++L+ + S + F
Sbjct: 164 D--MIPDILKPLPVSKVYGIGEKSEQKLK-AMGINTIDDLLK-------LSQESLIEIFG 213
Query: 188 SVGL-------GLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQK 239
+GL G+ R KSI E+T T+DK LL + ++++S ++ +
Sbjct: 214 KLGLEIYNRIRGIDERPVETMREIKSIGKEKTLEKDTKDKKLLLHYVKLFSDIISEELVR 273
Query: 240 EGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKA-ELPVSLRLIGLRV 298
E L RT+T+K+KT F V T++ TL KYI EDI A ++++ +L +RLIGL V
Sbjct: 274 ERLYARTVTVKIKTPDFAVHTKSKTLNKYIRLGEDIYDVAYEIIESLKLDQYIRLIGLSV 333
Query: 299 TQFN 302
+ +
Sbjct: 334 SNLS 337
>gi|213155590|ref|YP_002317635.1| DNA polymerase IV [Acinetobacter baumannii AB0057]
gi|301346037|ref|ZP_07226778.1| DNA polymerase IV [Acinetobacter baumannii AB056]
gi|301596200|ref|ZP_07241208.1| DNA polymerase IV [Acinetobacter baumannii AB059]
gi|417575406|ref|ZP_12226259.1| putative DNA polymerase IV [Acinetobacter baumannii Canada BC-5]
gi|421788645|ref|ZP_16224929.1| putative DNA polymerase IV [Acinetobacter baumannii Naval-82]
gi|421799153|ref|ZP_16235155.1| putative DNA polymerase IV [Acinetobacter baumannii Canada BC1]
gi|213054750|gb|ACJ39652.1| DNA polymerase IV [Acinetobacter baumannii AB0057]
gi|400206139|gb|EJO37119.1| putative DNA polymerase IV [Acinetobacter baumannii Canada BC-5]
gi|410401585|gb|EKP53724.1| putative DNA polymerase IV [Acinetobacter baumannii Naval-82]
gi|410410628|gb|EKP62527.1| putative DNA polymerase IV [Acinetobacter baumannii Canada BC1]
Length = 351
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 111/301 (36%), Positives = 166/301 (55%), Gaps = 13/301 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FG+R+AM ARKLCP+++ + +F KY S +F +Y SLDEAYL
Sbjct: 47 AREFGLRSAMSMSQARKLCPQVVIIEPNFEKYRAISAQIHSIFQQYTTLIEPLSLDEAYL 106
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+TE ++ S E+A +R ++ + GLT SAGVAPN+ LAKV SD NKPNG FV+
Sbjct: 107 DVTENLKQIA-SATEVAMYIREDIFRQTGLTASAGVAPNKFLAKVASDWNKPNGLFVIKP 165
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
++A +FI LP++KI G+GKVT+ L+ + ++T + LQK + AV H +
Sbjct: 166 SQVA--SFIQDLPLKKIPGVGKVTQEKLQQL-ELHTLGD-LQK--IEEAVLVHHFGKYGQ 219
Query: 188 SVGL-GLGSTNTP-QA-RFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRG 244
+ L G N P QA R R+ IS E TF A +AE + ++K+ L
Sbjct: 220 QLYLYAQGIDNRPVQAERARQQISKETTFDSDFTLAQCQPYWHGLAEKVWQSLEKKQLNA 279
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELP--VSLRLIGLRVTQF 301
R + +KLK +F+ + + + I S +D+++ +LL + +P RLIG+ V Q
Sbjct: 280 RGVNIKLKLKNFQTLQHSKSFKNPIHSQQDLIQVLFLLLNEMHIPENFQFRLIGIGVYQL 339
Query: 302 N 302
Sbjct: 340 Q 340
>gi|347530139|ref|YP_004836887.1| DNA polymerase IV [Sphingobium sp. SYK-6]
gi|345138821|dbj|BAK68430.1| DNA polymerase IV [Sphingobium sp. SYK-6]
Length = 366
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 115/301 (38%), Positives = 168/301 (55%), Gaps = 15/301 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FGVR+AMPG AR+LCPEL+FV F Y S R +F ++ SLDEAYL
Sbjct: 54 ARVFGVRSAMPGGQARRLCPELVFVRARFDAYRAVSQQIRGIFERFTDVIQPLSLDEAYL 113
Query: 68 DITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQ-FVL 125
D+T+ + GI S +A+E+R + EE GLT SAGV+ N+L+AK+ SD NKP+G V
Sbjct: 114 DVTQ--NKLGIVSATYVAQEIRRLIREETGLTASAGVSCNKLIAKLASDQNKPDGLCIVK 171
Query: 126 PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH--STA 183
P + A F++++P+ +I GIG VT + GI++ ++ K L A+ H +A
Sbjct: 172 PEEAEA---FMAAMPVGRIHGIGPVTARRM-ATLGIHSGADL--KAWPLPALQRHFGKSA 225
Query: 184 DFFLSVGLGLGSTNTPQARFRKSISSERTF-SVTEDKALLYRKLAEIAEMLSADMQKEGL 242
F+ G+ RKSIS E TF S + L +L +IA L +
Sbjct: 226 TFYHDAARGIDDRPVRDRETRKSISVEDTFESDIGAEGQLLAELEKIAARLWTRVIAARA 285
Query: 243 RGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSL--RLIGLRVTQ 300
GRT+TLK+K F + TR+ TL ++ED+ + LL+A+LP+ + RL+GL ++
Sbjct: 286 LGRTVTLKIKLGDFRILTRSRTLPAPPVNAEDLYAIGTDLLRAQLPLPIGARLLGLGLSN 345
Query: 301 F 301
Sbjct: 346 L 346
>gi|418936247|ref|ZP_13489976.1| DNA polymerase IV [Rhizobium sp. PDO1-076]
gi|375056985|gb|EHS53180.1| DNA polymerase IV [Rhizobium sp. PDO1-076]
Length = 359
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 104/302 (34%), Positives = 160/302 (52%), Gaps = 9/302 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FGV +AMP AR+ CP+LIFVP F Y S R++F +Y P SLDEAYL
Sbjct: 52 ARTFGVHSAMPSVTARRKCPDLIFVPPRFEVYRQVSQQIREIFAEYTPLIEPLSLDEAYL 111
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-P 126
D+TE + I+ EIA E+R + GL SAG++ N+ LAK+ SD+NKPNGQ V+ P
Sbjct: 112 DVTENRKGMEIA-TEIALEIRAKIKAVTGLNASAGISYNKFLAKMASDLNKPNGQAVITP 170
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFF 186
+ F+ +LP++K G+G T ++ GI T ++ K + +F
Sbjct: 171 KNGPG---FVEALPVKKFHGVGPATAERMKQ-HGIETGLDLKSKSLAFLQQHFGKSGPYF 226
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYR-KLAEIAEMLSADMQKEGLRGR 245
+ G+ R RKS+ +E TF D L + +L +AE + + + G+
Sbjct: 227 YGIARGIDERRVRPDRIRKSVGAEDTFIEDIDNLDLAKAELRPMAEKVWRYCEAHDITGK 286
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFNE 303
T+T+K+K + F TR+ T+ S + IL+ A LL + P +RL+G+ ++ N
Sbjct: 287 TITVKIKYSDFSQATRSKTVAGSFSDIDMILEIAETLLASVFPFKHPVRLLGITLSSLNT 346
Query: 304 DK 305
++
Sbjct: 347 EE 348
>gi|116254503|ref|YP_770339.1| DNA polymerase IV [Rhizobium leguminosarum bv. viciae 3841]
gi|115259151|emb|CAK10264.1| putative DNA polymerase [Rhizobium leguminosarum bv. viciae 3841]
Length = 370
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 102/302 (33%), Positives = 161/302 (53%), Gaps = 9/302 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FGV +AMP A++ CP+LIFVP F Y S R++F +Y P SLDEAYL
Sbjct: 63 ARVFGVHSAMPSVTAKRKCPDLIFVPPRFEVYRQVSQQIREIFAEYTPLIEPLSLDEAYL 122
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-P 126
D+TE + I+ EIA E+R + GL SAG++ N+ LAK+ SD+NKPNGQ V+ P
Sbjct: 123 DVTENLKGMEIA-TEIALEIRAKIKAVTGLNASAGISYNKFLAKMASDLNKPNGQAVITP 181
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFF 186
+ F+ +LP++K G+G T ++ GI T ++ K + +F
Sbjct: 182 KNGPG---FVEALPVKKFHGVGPATAERMKR-HGIETGLDLKSKSLAFLQQHFGKSGPYF 237
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYR-KLAEIAEMLSADMQKEGLRGR 245
+ G+ R RKS+ +E TF D L + +L +AE + + + G+
Sbjct: 238 YGIARGIDERQVRPDRIRKSVGAEDTFVEDIDNFDLAKAELRPLAEKVRRYCEAHDITGK 297
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFNE 303
T+T+K+K + F TR+ T+ +S + +L+ A LL + P +RL+G+ ++ N
Sbjct: 298 TVTVKIKYSDFSQATRSQTVSGAVSDVDQMLEIAETLLASVFPFKRPVRLLGVTLSSLNT 357
Query: 304 DK 305
++
Sbjct: 358 EE 359
>gi|452852653|ref|YP_007494337.1| DNA polymerase IV [Desulfovibrio piezophilus]
gi|451896307|emb|CCH49186.1| DNA polymerase IV [Desulfovibrio piezophilus]
Length = 381
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 107/298 (35%), Positives = 162/298 (54%), Gaps = 12/298 (4%)
Query: 9 RRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLD 68
R FGVR+AM AR+LCP+++ VP +Y S + V ++ P AS+DEAYLD
Sbjct: 40 RTFGVRSAMSVVKARQLCPQIVMVPVRMKRYKEISHMVMGVLKEFSPTVEQASVDEAYLD 99
Query: 69 ITEVCRERGISGIE-IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-P 126
T + ER IE + E++ + + GLTCS G AP R LAK+ SD++KP+G F++ P
Sbjct: 100 GTGL--ERLFGPIETVGSEIKKRMRQVTGLTCSVGAAPVRFLAKIASDMDKPDGMFIIHP 157
Query: 127 NDRMAVMTFISSLPIRKIGGIG-KVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADF 185
+ V TF+ LP+RKI G+G K+ E + R + TC ++L K
Sbjct: 158 HQ---VETFLRDLPVRKIPGVGKKLVETLAR--LRVQTCGDILHKERDFWVERLGKYGGA 212
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRG 244
G+ + KS S+E TF T D+ L L E AE + AD+++ G +G
Sbjct: 213 LHDRARGIDPNGVIVSSGAKSCSAENTFHEDTTDRETLTTWLLEQAERVGADLRRHGYKG 272
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKA-ELPVSLRLIGLRVTQF 301
RT+TLK+K F+ TR+++L ++ I + A LL+ +L ++RLIG+ V+ F
Sbjct: 273 RTITLKIKYTDFKQVTRSLSLDTRTDTTSVIFETACTLLRQLDLRRAVRLIGVGVSNF 330
>gi|421485956|ref|ZP_15933508.1| DNA polymerase IV [Achromobacter piechaudii HLE]
gi|400195737|gb|EJO28721.1| DNA polymerase IV [Achromobacter piechaudii HLE]
Length = 356
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 109/310 (35%), Positives = 169/310 (54%), Gaps = 15/310 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFG+ +AM A +LCP+ I+VP DF +Y S R++F ++ SLDEAYL
Sbjct: 47 ARRFGIHSAMSAVRAERLCPQAIYVPPDFNRYREVSRQIRQIFARHTDLIEPLSLDEAYL 106
Query: 68 DITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP 126
D+T + G+ S E+A+ +R + EE GLT SAG+APN+ LAK+ SD NKP+GQFV+
Sbjct: 107 DVT--INKCGLPSATEVAQVIRHQIREETGLTASAGIAPNKFLAKIASDWNKPDGQFVVR 164
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFF 186
+ V+ F+ LP+RK+ G+GKVT+ L + GI+T ++ + +
Sbjct: 165 PGK--VLDFLQPLPVRKVPGVGKVTQARL-EQLGIHTVGDLATHSAEELEHYFGRYGRRL 221
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRG 244
+ G+ + + +S+E TFS ED L L + +A+ + K+G G
Sbjct: 222 YELARGIDEREVQTDQPLQQVSAETTFS--EDIRLDALGDAIDRMADRVWDQALKKGALG 279
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELPVS--LRLIGLRVTQF 301
RT+ LKLKT F + TR+ T S+ ++ A +L + ELP RL G+ ++ F
Sbjct: 280 RTVVLKLKTDRFRILTRSQTSPNPPGSAAELAAVAKLLCERVELPPETLYRLAGVGMSNF 339
Query: 302 NE--DKVRAP 309
+ ++ R P
Sbjct: 340 ADPAEQARQP 349
>gi|419797103|ref|ZP_14322604.1| ImpB/MucB/SamB family protein [Neisseria sicca VK64]
gi|385698791|gb|EIG29135.1| ImpB/MucB/SamB family protein [Neisseria sicca VK64]
Length = 382
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 103/301 (34%), Positives = 163/301 (54%), Gaps = 15/301 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG+ +AM A++LCP+ ++VP F Y S VF +Y SLDEAYL
Sbjct: 79 ARQFGLHSAMSVATAKRLCPQAVYVPPHFDLYRQVSAQIHAVFRRYTDLIEPLSLDEAYL 138
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T + + E+A+E+R +++ E GLT SAG+APN+ LAK+ SD KPNGQFVLP
Sbjct: 139 DVTHNFKNIPYAS-EVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPP 197
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADF 185
+ VM F+ +LP+ KI G+GKVT ++ + G+ T ++ ++G LL +H
Sbjct: 198 HK--VMAFLETLPLGKIPGVGKVTLKKMQSL-GMQTAGDLRRFERGELL----NHFGRYG 250
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLR 243
+ L G+ P R+ + ++ ED +L L +AE L + ++ +
Sbjct: 251 YRLYDLARGTDERPVKAERERLQISTEITLPEDLSLEQAAGHLPHLAEDLWRQIARKNVE 310
Query: 244 GRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV---SLRLIGLRVTQ 300
+ +TLKLKT F + TR++T + ++ +L A L++ P + RLIG+ V
Sbjct: 311 AKGVTLKLKTHDFRIITRSLTYSSVLPDTDALLCAAQTLMQRVPPQREDAFRLIGIGVNH 370
Query: 301 F 301
Sbjct: 371 L 371
>gi|255068100|ref|ZP_05319955.1| DNA-directed DNA polymerase [Neisseria sicca ATCC 29256]
gi|340362974|ref|ZP_08685331.1| DNA-directed DNA polymerase IV [Neisseria macacae ATCC 33926]
gi|349610910|ref|ZP_08890230.1| DNA polymerase IV [Neisseria sp. GT4A_CT1]
gi|255047615|gb|EET43079.1| DNA-directed DNA polymerase [Neisseria sicca ATCC 29256]
gi|339886785|gb|EGQ76409.1| DNA-directed DNA polymerase IV [Neisseria macacae ATCC 33926]
gi|348615332|gb|EGY64854.1| DNA polymerase IV [Neisseria sp. GT4A_CT1]
Length = 352
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 103/301 (34%), Positives = 163/301 (54%), Gaps = 15/301 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG+ +AM A++LCP+ ++VP F Y S VF +Y SLDEAYL
Sbjct: 49 ARQFGLHSAMSVATAKRLCPQAVYVPPHFDLYRQVSAQIHAVFRRYTDLIEPLSLDEAYL 108
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T + + E+A+E+R +++ E GLT SAG+APN+ LAK+ SD KPNGQFVLP
Sbjct: 109 DVTHNFKNIPYAS-EVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPP 167
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADF 185
+ VM F+ +LP+ KI G+GKVT ++ + G+ T ++ ++G LL +H
Sbjct: 168 HK--VMAFLETLPLGKIPGVGKVTLKKMQSL-GMQTAGDLRRFERGELL----NHFGRYG 220
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLR 243
+ L G+ P R+ + ++ ED +L L +AE L + ++ +
Sbjct: 221 YRLYDLARGTDERPVKAERERLQISTEITLPEDLSLEQAAGHLPHLAEDLWRQIARKNVE 280
Query: 244 GRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV---SLRLIGLRVTQ 300
+ +TLKLKT F + TR++T + ++ +L A L++ P + RLIG+ V
Sbjct: 281 AKGVTLKLKTHDFRIITRSLTYSSVLPDTDALLCAAQTLMQRVPPQREDAFRLIGIGVNH 340
Query: 301 F 301
Sbjct: 341 L 341
>gi|294502105|ref|YP_003566170.1| DNA polymerase IV, damage-inducible protein P [Salinibacter ruber
M8]
gi|294342089|emb|CBH22754.1| DNA polymerase IV, damage-inducible protein P [Salinibacter ruber
M8]
Length = 393
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 116/314 (36%), Positives = 169/314 (53%), Gaps = 34/314 (10%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR +GV +A P A + CP LIFVP Y S R++ +Y SLDEAYL
Sbjct: 80 ARPYGVHSAQPAVEADRQCPGLIFVPPRMEVYQEESRRIREILRRYTDVIEPLSLDEAYL 139
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-P 126
D+TE ++ SG +A +R +Y+E GLT SAGV P++ +AKV SD +KP+G V+ P
Sbjct: 140 DVTE-PKKGPPSGTLVARRIREEIYQETGLTASAGVGPSKFVAKVASDRDKPDGLTVIRP 198
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGI-------NTCEEMLQKGSLLCAVFS 179
++ + FI+ LP+ GIG VTE ++++ GI +T E+ L++ F
Sbjct: 199 EEQ---LDFIAGLPVGDFHGIGPVTEEKMQEM-GIESGAGLQDTPEKALRR------RFG 248
Query: 180 HSTADFFLSVGLGLGSTNTP--QARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSA 235
F L +G + P R KS+ +ERTFS ++E K +L R L IAE ++
Sbjct: 249 KRGGHFKK---LAMGEDDRPVQPDRESKSVGAERTFSEDISEPKEMLSR-LEPIAERVAG 304
Query: 236 DMQKEG-----LRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV- 289
+ G +RGRT+TLKLK+ EV TR TL++ I S E +++ A LL P
Sbjct: 305 RLGSAGPEGTPVRGRTVTLKLKSHDHEVSTRQTTLRRAIRSEEALMRLAKWLLSRPHPPE 364
Query: 290 -SLRLIGLRVTQFN 302
+RL+GL V+
Sbjct: 365 EPVRLLGLSVSSLT 378
>gi|304382732|ref|ZP_07365223.1| DNA-directed DNA polymerase IV [Prevotella marshii DSM 16973]
gi|304336127|gb|EFM02372.1| DNA-directed DNA polymerase IV [Prevotella marshii DSM 16973]
Length = 400
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 112/300 (37%), Positives = 160/300 (53%), Gaps = 16/300 (5%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFGVR+AMP A+ CP+LI VP + Y S+ ++F +Y SLDEA+L
Sbjct: 86 ARRFGVRSAMPVKKAKLRCPQLIIVPVRHSLYREISEQVHEIFGRYTDLIEPLSLDEAFL 145
Query: 68 DITEVCRERGIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP 126
DIT ++GI ++IA+E+R S+ EE LT SAG++ N+ LAK+ SD KP+G FV+
Sbjct: 146 DITH--NKKGIEMAVDIAKEIRQSIREELHLTASAGISYNKFLAKIASDFRKPDGLFVIH 203
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFF 186
DR + FI+ LPI G+G T + + + + L VF + A ++
Sbjct: 204 PDR--ALDFIARLPIHDFWGVGSKTAAVFHKMGVFDGAQLRACSRRHLTEVFGKAGAMYY 261
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRG 244
G+ R RKS+S E+TF + + +L +L E L ++K G G
Sbjct: 262 -EFARGIDHRPVVTERERKSVSCEQTFEEDIYSNSTVLI-ELYHTMEDLVRRLEKTGFEG 319
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKA-----ELPVSLRLIGLRVT 299
TLTLK+K F TR++T K + S DIL A LLK+ E P+ RLIGL V+
Sbjct: 320 HTLTLKIKYGDFSQVTRSMTTGKTLRSKADILPRAKQLLKSISWSVEKPI--RLIGLAVS 377
>gi|220905578|ref|YP_002480890.1| DNA-directed DNA polymerase [Desulfovibrio desulfuricans subsp.
desulfuricans str. ATCC 27774]
gi|219869877|gb|ACL50212.1| DNA-directed DNA polymerase [Desulfovibrio desulfuricans subsp.
desulfuricans str. ATCC 27774]
Length = 426
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 115/311 (36%), Positives = 170/311 (54%), Gaps = 33/311 (10%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FGV +AMP +AR+LCP+ + V + +Y S + P AS+DEAY+
Sbjct: 45 ARTFGVHSAMPMVVARRLCPQAVIVRGRYQRYAELSHAIMSALKDFSPLVEPASVDEAYM 104
Query: 68 DITEVCRERGISGI-EIAEELRTSVYE-EAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL 125
D T + ER + E+ ++T + + GLTCS G AP + LAK+CSD+NKP+G F+L
Sbjct: 105 DATGL--ERLFGPLEELVAGIKTRIVDVTGGLTCSVGAAPVKFLAKICSDVNKPDGVFIL 162
Query: 126 PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADF 185
+ M F+ +LP+ +I G+GK T L+D+ G+ T ++ + FS DF
Sbjct: 163 RQENMD--AFLCALPVGRIPGVGKRTVQSLQDL-GVRTVAQLRR--------FS---PDF 208
Query: 186 ----FLSVGLGL-------GSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEML 233
F GL L S R KS S+E TF+ T D+ L R L AE +
Sbjct: 209 MERRFGKWGLALYERAQGRDSRKVETEREAKSESAECTFAEDTRDRDFLQRMLMAHAERV 268
Query: 234 SADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SL 291
+ +++ G RGRT+TLK+K F TR+ TL++ +S++E I + LL AELP+ +
Sbjct: 269 GSSLRRHGYRGRTITLKVKFCDFRQITRSRTLEEAVSATETIFETGCRLL-AELPLPQPV 327
Query: 292 RLIGLRVTQFN 302
RLIGL V+ F+
Sbjct: 328 RLIGLGVSGFD 338
>gi|254283888|ref|ZP_04958856.1| DNA-directed DNA polymerase protein [gamma proteobacterium NOR51-B]
gi|219680091|gb|EED36440.1| DNA-directed DNA polymerase protein [gamma proteobacterium NOR51-B]
Length = 371
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 119/318 (37%), Positives = 167/318 (52%), Gaps = 12/318 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FGVR+AMP A++ C EL+FV F Y S + +F +Y SLDEAYL
Sbjct: 55 ARTFGVRSAMPSITAKRKCSELLFVKPRFDVYRTVSQQIQAIFRRYTALVEPLSLDEAYL 114
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-P 126
D++E RER S E AE +R ++EE GLT SAGV+ N+ LAKV SD NKPNG V+ P
Sbjct: 115 DVSE-DRERVGSATETAERIRREIFEEVGLTASAGVSYNKFLAKVASDQNKPNGLCVIRP 173
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM-LQKGSLLCAVFSHSTADF 185
++ A F + LP R+ G+G T + GI++ ++ Q L F S A +
Sbjct: 174 HEGAA---FAAGLPARRFFGVGPKTAQRM-AALGIHSGADLRAQSLDFLQQHFGKS-ALY 228
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRG 244
G R RKSI ERT+S + L L +I +++ ++ RG
Sbjct: 229 LYRASRGEDFREVRPNRERKSIGGERTYSTDLKHSQELRAALVDIIDLVWRRIEARTARG 288
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQF- 301
RT+TLK+K + F TRA ++ I S E + A LL+ LPV +RLIGL ++
Sbjct: 289 RTVTLKIKFSDFRQITRARSVHSCIDSLEGFSQIAHALLETVLPVERGVRLIGLTLSSLE 348
Query: 302 NEDKVRAPSDPTQKTLTN 319
+ D + ++P K LT
Sbjct: 349 SSDAPTSSAEPATKALTQ 366
>gi|352516889|ref|YP_004886206.1| DNA polymerase IV [Tetragenococcus halophilus NBRC 12172]
gi|348600996|dbj|BAK94042.1| DNA polymerase IV [Tetragenococcus halophilus NBRC 12172]
Length = 378
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 102/300 (34%), Positives = 168/300 (56%), Gaps = 11/300 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++G+ +AM A +LCP FVP + KY S R++F Y S+DEAYL
Sbjct: 66 ARKYGIHSAMSAQKAYELCPHATFVPGNHQKYREISQKIREIFHCYTDIIEPVSIDEAYL 125
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T + S I+IA+ ++ +++E LTCSAGV+ N+ LAK+ SD KP G V+
Sbjct: 126 DVTN-NKINSSSAIKIAKLIQHDIWQEVHLTCSAGVSYNKFLAKLASDYQKPRGLTVVTP 184
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFF 186
D + F+ LPI K G+GK T + ++ GI T ++ QK + L +F +
Sbjct: 185 DE--AVEFLRDLPIEKFHGVGKKTVPKMHEL-GIYTGNDLYQKSEMELIQIFGKMGYSLY 241
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTF--SVTEDKALLYRKLAEIAEMLSADMQKEGLRG 244
V G+ ++ R RKS+ ERT+ ++T ++ L +L +AE ++ ++KE G
Sbjct: 242 RKV-RGIHNSPVQVTRERKSVGRERTYGKALTSEQECL-SQLRIMAEQVTESLKKEQKHG 299
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRVTQFN 302
+T+ LKL+ + FE T+ T+Q+YI +DI AS++ + A++ +RL+G+ +T +
Sbjct: 300 KTVVLKLRYSDFETITKRATVQEYIYQKDDIFSQASLIFEEVAQVEKGVRLLGITMTNLD 359
>gi|148380777|ref|YP_001255318.1| DNA polymerase IV [Clostridium botulinum A str. ATCC 3502]
gi|153932271|ref|YP_001385062.1| DNA polymerase IV [Clostridium botulinum A str. ATCC 19397]
gi|153934711|ref|YP_001388531.1| DNA polymerase IV [Clostridium botulinum A str. Hall]
gi|148290261|emb|CAL84381.1| DNA polymerase IV [Clostridium botulinum A str. ATCC 3502]
gi|152928315|gb|ABS33815.1| DNA polymerase IV [Clostridium botulinum A str. ATCC 19397]
gi|152930625|gb|ABS36124.1| DNA polymerase IV [Clostridium botulinum A str. Hall]
Length = 349
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 104/303 (34%), Positives = 163/303 (53%), Gaps = 11/303 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++GV +AMP FIA+K CP I+VP +Y S+ K+ K P S+DEAYL
Sbjct: 48 ARKYGVHSAMPVFIAKKRCPFGIYVPGRHERYKEVSNNIFKILYKVTPIIEPVSIDEAYL 107
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
DIT + E I++AE ++ V E GLT S G++ N+ LAK+ SD NKP+G ++
Sbjct: 108 DITNIKEE----PIKVAEHIKKRVKNEMGLTLSVGISYNKFLAKLASDWNKPDGIKIIRQ 163
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCA-VFSHSTADFF 186
D + + + LPI KI GIGK + L ++ GI T E+M + C F + +
Sbjct: 164 D--MIPSILMPLPINKIHGIGKKSVEKLNNI-GIYTVEDMHKLSRDFCIEYFGKFGVEIY 220
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
+ G+ +R RKSI E T +K + + L + + +S ++ K G+
Sbjct: 221 ERI-RGIDYREVKVSRERKSIGKEITLKKDITNKEEMKKYLLDFSNKVSTNLYKRNTGGK 279
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHA-SVLLKAELPVSLRLIGLRVTQFNED 304
T+T+K+KT++F+ TR+ T+ YI ++I A +L +RLIGL V+ E+
Sbjct: 280 TVTVKIKTSNFQTHTRSKTVNDYIRDKDEIYNIACDILEHINFKEPIRLIGLTVSNLGEN 339
Query: 305 KVR 307
K++
Sbjct: 340 KIK 342
>gi|209547183|ref|YP_002279101.1| DNA polymerase IV [Rhizobium leguminosarum bv. trifolii WSM2304]
gi|209538427|gb|ACI58361.1| DNA-directed DNA polymerase [Rhizobium leguminosarum bv. trifolii
WSM2304]
Length = 363
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 104/298 (34%), Positives = 159/298 (53%), Gaps = 9/298 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGV +AMP A++ CPELIFVP F Y S R++F +Y P SLDEAYL
Sbjct: 56 ARKFGVHSAMPSVTAKRKCPELIFVPPRFDVYKAVSQQIREIFAEYTPLIEPLSLDEAYL 115
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-P 126
D+T + I+ EIA E+R + E GL SAG++ N+ LAK+ SD+NKPNGQ V+ P
Sbjct: 116 DVTHNLKGMEIA-TEIALEIRARIKEVTGLNASAGISYNKFLAKMASDLNKPNGQAVITP 174
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFF 186
+ A F+ +LP++K G+G T + + GI+T + +K + +F
Sbjct: 175 KNGPA---FVEALPVKKFHGVGPATAERMHRL-GIDTGASLKEKSLEFLVEHFGKSGPYF 230
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRK-LAEIAEMLSADMQKEGLRGR 245
+ G+ R RKS+ +E TFS R+ L + E + A + G+ +
Sbjct: 231 YGIARGIDERQVKPNRVRKSVGAEDTFSQDLHTFEPAREGLQPLIEKVWAYCEANGIGAK 290
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQF 301
T+TLK+K A F TR+ T+ + + D+ + S+LL P +RL+G+ ++
Sbjct: 291 TVTLKVKYADFNQITRSKTVPAPLPAIADLEEIISLLLVPIFPPRKGVRLLGVTLSSL 348
>gi|293604743|ref|ZP_06687143.1| DNA-directed DNA polymerase IV [Achromobacter piechaudii ATCC
43553]
gi|292816912|gb|EFF75993.1| DNA-directed DNA polymerase IV [Achromobacter piechaudii ATCC
43553]
Length = 360
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 110/315 (34%), Positives = 169/315 (53%), Gaps = 21/315 (6%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFG+ +AM A +LCP+ I+VP DF +Y S R++F ++ SLDEAYL
Sbjct: 51 ARRFGIHSAMSAMRAERLCPDAIYVPPDFNRYREVSRQIRQIFARHTDLIEPLSLDEAYL 110
Query: 68 DITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP 126
D+T + G+ S E+A+ +R + EE GLT SAG+APN+ LAK+ SD NKP+GQFV+
Sbjct: 111 DVTH--NKGGLPSATEVAQVIRHQIREETGLTASAGIAPNKFLAKIASDWNKPDGQFVIR 168
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFF 186
+ V+ F+ LP+RK+ G+GKVT+ L + GI+T ++ A +
Sbjct: 169 PTK--VLEFLQPLPVRKVPGVGKVTQARL-EQLGIHTVGDLATHSLEELAHYFGRYGRRL 225
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRG 244
+ G+ + + +S+E TFS ED L L + +A + K+G G
Sbjct: 226 YELARGIDEREVQTDQPLQQVSAETTFS--EDIRLDALGEAIDRMAGKVWDQALKKGALG 283
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELPVS--LRLIGLRVTQF 301
RT+ LKLKT F + TR+ T S+ ++ A +L + ELP RL G+ ++ F
Sbjct: 284 RTVVLKLKTDRFRILTRSQTSLNPPGSAAELAAVARLLCERVELPPETLYRLAGVGMSNF 343
Query: 302 NEDKVRAPSDPTQKT 316
+DP +++
Sbjct: 344 --------ADPAEQS 350
>gi|294664551|ref|ZP_06729895.1| DNA polymerase IV [Xanthomonas fuscans subsp. aurantifolii str.
ICPB 10535]
gi|292605685|gb|EFF48992.1| DNA polymerase IV [Xanthomonas fuscans subsp. aurantifolii str.
ICPB 10535]
Length = 359
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 110/302 (36%), Positives = 165/302 (54%), Gaps = 13/302 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FG+R+AMP A +LCP+ IFVP DF +Y S R++F ++ SLDEAYL
Sbjct: 47 ARTFGIRSAMPAVRAERLCPDAIFVPPDFARYKAVSRQVREIFHRHTDLVEPLSLDEAYL 106
Query: 68 DITEVCRERGIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP 126
D+T+ + G+ E+A+ +RT + EE LT SAG+APN+ LAK+ SD KP+GQFV+
Sbjct: 107 DVTQA--KTGMQLATEVAQSIRTQIREETQLTASAGIAPNKFLAKIASDWRKPDGQFVIA 164
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFF 186
R V F+ L + +I G+GKV + L GI T ++ Q+ S
Sbjct: 165 PSR--VDAFLLPLKVNRIPGVGKVMDGKL-AALGIVTVADLRQRPLEELQAHFGSFGQSL 221
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRG 244
G+ + +S+SSE TFS ED AL L + +AE ++ G
Sbjct: 222 YRRARGIDERPVEPDQEVQSVSSEDTFS--EDLALDALDPHILRLAEKTWLATRRTERIG 279
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELPVS--LRLIGLRVTQF 301
RT+ LKLKT++F + TR+ T ++ +S E + + A L + ELP RL+G+ ++ F
Sbjct: 280 RTVVLKLKTSNFRILTRSYTPEQPPTSQEALAQIALALTRRVELPAQTRYRLVGVGLSGF 339
Query: 302 NE 303
++
Sbjct: 340 SD 341
>gi|421540704|ref|ZP_15986846.1| DNA polymerase IV [Neisseria meningitidis 93004]
gi|402318254|gb|EJU53778.1| DNA polymerase IV [Neisseria meningitidis 93004]
Length = 352
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 105/299 (35%), Positives = 164/299 (54%), Gaps = 17/299 (5%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG+ +AM A++LCP+ ++VP F Y S VF +Y SLDEAYL
Sbjct: 49 ARQFGLHSAMSVATAKRLCPQAVYVPPHFDLYRQVSAQIHAVFRRYTDLIEPLSLDEAYL 108
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T + +G E+A+E+R +++ E GLT SAG+APN+ LAK+ SD KPNGQFVLP
Sbjct: 109 DVTHNFKNIPYAG-EVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPP 167
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADF 185
+ VM F+ +LP+ KI G+GKVT ++ + G+ T ++ ++G LL +H
Sbjct: 168 HK--VMAFLETLPLGKIPGVGKVTLKKMQSL-GMRTAGDLRRFERGELL----NHFGRYG 220
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLR 243
+ L G+ P R+ + ++ ED L L +AE L + ++ +
Sbjct: 221 YRLYDLVRGTDERPVKAERERLQISTEITLPEDLPLEQAAGHLPHLAEDLWRQITRKNVE 280
Query: 244 GRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV----SLRLIGLRV 298
+++TLKLKT F + TR +T + +L+ A +L+ A +P + RLIG+ V
Sbjct: 281 AQSVTLKLKTYDFRIITRTLTYSSVLPDCAALLQAAQMLI-ARVPPQTEDAFRLIGIGV 338
>gi|380513106|ref|ZP_09856513.1| DNA polymerase IV [Xanthomonas sacchari NCPPB 4393]
Length = 356
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 114/304 (37%), Positives = 166/304 (54%), Gaps = 17/304 (5%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FGVR+AMP A +LCP+ IFVP DF +Y S R++F ++ SLDEAYL
Sbjct: 50 ARVFGVRSAMPALRAERLCPDAIFVPPDFARYKAVSRQVREIFQRHTDMIEPLSLDEAYL 109
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T E + EIA+ +R + E LT SAG+APN+ LAK+ SD KP+GQFV+
Sbjct: 110 DVTAPKGELR-TATEIAQTIRAQIRAETELTASAGIAPNKFLAKIASDWRKPDGQFVIRP 168
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
R V F++ LP+ K+ G+GKV E L ++ GI T ++ + S
Sbjct: 169 HR--VEAFLTPLPVNKVPGVGKVMEAKLAEL-GIATVGDLRARSEAELEARFGSFGLRLY 225
Query: 188 SVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL-----LYRKLAEIAEMLSADMQKEGL 242
G+ + +SISSE TF+ ED AL R+LAE + +A + E +
Sbjct: 226 QRARGIDERPVESDQPVQSISSEDTFA--EDLALDALEPAIRQLAE--KTWNATRRTERI 281
Query: 243 RGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL-LKAELPVS--LRLIGLRVT 299
RT+ LKLKTA F + TR+ T ++ S + ++ A L + +LP S RL+G+ ++
Sbjct: 282 -ARTVVLKLKTAQFRILTRSFTPEQPPESLQTLIDIALALRARVDLPASTRYRLVGVGLS 340
Query: 300 QFNE 303
F+E
Sbjct: 341 GFHE 344
>gi|170748058|ref|YP_001754318.1| DNA-directed DNA polymerase [Methylobacterium radiotolerans JCM
2831]
gi|170654580|gb|ACB23635.1| DNA-directed DNA polymerase [Methylobacterium radiotolerans JCM
2831]
Length = 360
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 117/318 (36%), Positives = 171/318 (53%), Gaps = 18/318 (5%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFGVR+AMP AR+LCP+L+FV F Y S+ R VF ++ +LDEAYL
Sbjct: 53 ARRFGVRSAMPSATARRLCPDLLFVKPRFEVYRAISEEIRAVFARHTAVIEPVALDEAYL 112
Query: 68 DITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP 126
D+TE G+ + +A+ +R + E GL SAGV+ N+ LAKV SD KPN FV+
Sbjct: 113 DVTENL--LGLPTATAVAKAIRAEILERTGLVASAGVSYNKFLAKVASDHRKPNALFVI- 169
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM-LQKGSLLCAVFSHSTADF 185
M F+++LPI + G+G VTE ++ + GI T ++ L F + A +
Sbjct: 170 TPAMG-PDFVAALPIGRFHGVGPVTEAKMKRL-GIETGADLRAWTPERLRETFGSAGA-Y 226
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKA---LLYRKLAEIAEMLSADMQKEGL 242
+ +V G+ R RKSI +E TFS +D A +L +LA + + + A +G+
Sbjct: 227 YHAVARGIDGRPVRAHRVRKSIGAETTFS--DDTAAFEVLAARLAPLFDKVWAAADAKGM 284
Query: 243 RGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQ 300
R RT+TLKLK + F TRA +L ++ + + LL P+ S RLIG+ ++
Sbjct: 285 RARTVTLKLKFSDFAQVTRARSLPVPVADRAGLERIGLDLLAGLFPLRRSARLIGVSLSG 344
Query: 301 FNEDKVRAPSDPTQKTLT 318
F +D AP P Q L
Sbjct: 345 FAQD---APEAPLQLGLA 359
>gi|408380616|ref|ZP_11178199.1| DNA polymerase IV [Agrobacterium albertimagni AOL15]
gi|407745470|gb|EKF57003.1| DNA polymerase IV [Agrobacterium albertimagni AOL15]
Length = 364
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 110/303 (36%), Positives = 159/303 (52%), Gaps = 11/303 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FGV +AMP A + CP LIFV F Y S+ R +F +Y P SLDEAYL
Sbjct: 54 ARLFGVHSAMPSVTAARKCPGLIFVKPRFDAYREVSEKIRAIFSEYTPIIEPLSLDEAYL 113
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+TE ++ I+ EIA ++R + GL SAG++ N+ LAK+ SD+NKPNGQ V+
Sbjct: 114 DVTENLKDMPIA-TEIALQIRARIKAVTGLNASAGISYNKFLAKMASDLNKPNGQAVITP 172
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
TF+ L ++K G+G T +R + GI T ++ K + FF
Sbjct: 173 RHGP--TFVEELAVKKFHGVGPATAEKMRRL-GIETGADLKAKSLTFLSQHFGKAGPFFY 229
Query: 188 SVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYR---KLAEIAEMLSADMQKEGLRG 244
+ G+ R RKSI +E TF+ D + L +L +A+ + + + +GL G
Sbjct: 230 GIARGIDERPVRPDRERKSIGAEDTFAA--DISALQAASDELRPLAQKVWSSCRAKGLSG 287
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFN 302
+TLTLK+K A F TR+ T + ED+L+ A VLL P +RL+GL ++
Sbjct: 288 KTLTLKVKYADFTQVTRSRTTSVPFAGVEDMLELAHVLLVGLHPFKRPVRLLGLTLSSLV 347
Query: 303 EDK 305
DK
Sbjct: 348 IDK 350
>gi|170755759|ref|YP_001782423.1| DNA polymerase IV [Clostridium botulinum B1 str. Okra]
gi|429244890|ref|ZP_19208309.1| DNA polymerase IV [Clostridium botulinum CFSAN001628]
gi|169120971|gb|ACA44807.1| DNA polymerase IV [Clostridium botulinum B1 str. Okra]
gi|428758080|gb|EKX80533.1| DNA polymerase IV [Clostridium botulinum CFSAN001628]
Length = 349
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 104/303 (34%), Positives = 163/303 (53%), Gaps = 11/303 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++GV +AMP FIA+K CP I+VP +Y S+ K+ K P S+DEAYL
Sbjct: 48 ARKYGVHSAMPVFIAKKRCPFGIYVPGRHERYKEVSNNIFKILYKVTPIIEPVSIDEAYL 107
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
DIT + E I++AE ++ V E GLT S G++ N+ LAK+ SD NKP+G ++
Sbjct: 108 DITNIKEE----PIKVAEHIKKKVKNEMGLTLSVGISYNKFLAKLASDWNKPDGIKIIRQ 163
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCA-VFSHSTADFF 186
D + + + LPI KI GIGK + L ++ GI T E+M + C F + +
Sbjct: 164 D--MIPSILMPLPINKIHGIGKKSVEKLNNI-GIYTVEDMHKLSRDFCIEYFGKFGVEIY 220
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
+ G+ +R RKSI E T +K + + L + + +S ++ K G+
Sbjct: 221 ERI-RGIDYREVKVSRERKSIGKEITLKKDITNKEEMKKYLLDFSNKVSTNLYKRNSGGK 279
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHA-SVLLKAELPVSLRLIGLRVTQFNED 304
T+T+K+KT++F+ TR+ T+ YI ++I A +L +RLIGL V+ E+
Sbjct: 280 TVTVKIKTSNFQTHTRSKTVNDYIRDKDEIYNIACDILEHINFKEPIRLIGLTVSNLGEN 339
Query: 305 KVR 307
K++
Sbjct: 340 KIK 342
>gi|302382770|ref|YP_003818593.1| DNA-directed DNA polymerase [Brevundimonas subvibrioides ATCC
15264]
gi|302193398|gb|ADL00970.1| DNA-directed DNA polymerase [Brevundimonas subvibrioides ATCC
15264]
Length = 358
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 109/316 (34%), Positives = 172/316 (54%), Gaps = 14/316 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FGVR+AMP A + CP+L+FVP F Y S + +F Y P SLDEAYL
Sbjct: 52 ARVFGVRSAMPSTTALRQCPDLVFVPPRFEVYRAVSKQIQAIFADYTPLVEPLSLDEAYL 111
Query: 68 DITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP 126
D+T+ RG+ + E A E+R + EE GLT SAG++ N+ LAK+ SD KPNGQFV+P
Sbjct: 112 DVTDNL--RGLPTASETAVEIRARILEETGLTASAGISYNKFLAKLASDQRKPNGQFVVP 169
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFF 186
R F+ LP+++ G+G VT + + GI T E++ ++ L + ++
Sbjct: 170 PGRGE--AFVEILPVKRFYGVGPVTAAKMSRL-GIETGEDLRRQSLALLQQHFGKSGPWY 226
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRG 244
++ G R RKS SE TF +T+ A+ LA ++ +K G
Sbjct: 227 YAISRGEDHRAVNPNRERKSSGSETTFGSDLTDPSAIEAGVLAMTGDVWGW-CEKSDAYG 285
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS--LRLIGLRVTQFN 302
RT+T+K++ A F+ TR+ + + ++S + + + + +L+++ P + +RL+G+ ++ F
Sbjct: 286 RTVTVKVRWADFQQSTRSRSFPEPVTSKDRLEEISLLLVRSLYPPAKGIRLVGVSLSNF- 344
Query: 303 EDKVRAPSDPTQKTLT 318
KV APS Q L
Sbjct: 345 --KVPAPSASDQLALA 358
>gi|393765264|ref|ZP_10353849.1| DNA-directed DNA polymerase [Methylobacterium sp. GXF4]
gi|392729263|gb|EIZ86543.1| DNA-directed DNA polymerase [Methylobacterium sp. GXF4]
Length = 360
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 114/309 (36%), Positives = 168/309 (54%), Gaps = 15/309 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFGVR+AMP AR+LCP+L+FV F Y S+ R VF ++ P +LDEAYL
Sbjct: 53 ARRFGVRSAMPSATARRLCPDLLFVKPRFEVYRAVSEEIRAVFARHTPVIEPVALDEAYL 112
Query: 68 DITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP 126
D+TE G+ + +A+ +R + E GL SAGV+ N+ LAKV SD KP+ FV+
Sbjct: 113 DVTENL--LGLPTATAVAKAIRAEILERTGLVASAGVSYNKFLAKVASDYRKPDALFVI- 169
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM-LQKGSLLCAVFSHSTADF 185
M F+++LPI + G+G VTE ++ + GI T ++ L F + A +
Sbjct: 170 TPAMGP-DFVAALPIGRFHGVGPVTEAKMKRL-GIETGADLRAWDPDRLREAFGSAGA-Y 226
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKA---LLYRKLAEIAEMLSADMQKEGL 242
+ +V GL R RKSI +E TFS ED A +L +LA + + + A +G+
Sbjct: 227 YHAVARGLDMRPVRAHRVRKSIGAETTFS--EDTAAFEILAARLAPLFDKVWAGADAKGM 284
Query: 243 RGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQ 300
R RT+TLKLK + F TRA +L ++ + + LL P+ S RLIG+ ++
Sbjct: 285 RARTVTLKLKFSDFAQVTRAKSLSVPVADRAALERIGLDLLAGLFPLRRSARLIGIALSG 344
Query: 301 FNEDKVRAP 309
F + + P
Sbjct: 345 FEQGEKEEP 353
>gi|384539827|ref|YP_005723910.1| Nucleotidyltransferase/DNA polymerase [Sinorhizobium meliloti SM11]
gi|336035170|gb|AEH81101.1| Nucleotidyltransferase/DNA polymerase [Sinorhizobium meliloti SM11]
Length = 378
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 104/300 (34%), Positives = 161/300 (53%), Gaps = 11/300 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGV +AMP A++ CP+LIFVP F Y S + +F +Y P SLDEAYL
Sbjct: 71 ARKFGVHSAMPSVTAKRKCPDLIFVPHRFDVYRAVSRQIQAIFAEYTPLIEPLSLDEAYL 130
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+TE + ++ EIAEE+RT + + LT SAGV+ N+ LAK+ SD KP+G FV+
Sbjct: 131 DVTENLKGLRLA-TEIAEEIRTRIKAKTHLTASAGVSYNKFLAKMASDQRKPDGLFVITP 189
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
R F+ +LP++K G+G T ++ + GI T ++ + + +F
Sbjct: 190 KRGP--EFVQALPVKKFHGVGPATAEKMKRL-GIETGADLKSRDLAFLQQHFGKSGPYFY 246
Query: 188 SVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADM---QKEGLRG 244
+ G+ R RKSI +E TF ED L A + ++ + G+RG
Sbjct: 247 WIARGIDEREVKPDRIRKSIGAEDTFR--EDVHDLETARAGLKPLIDKVWHYCEASGIRG 304
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFN 302
+T+TLK+K A F TR+ T+ I+S ++ + A +LL PV +RL+G+ ++ +
Sbjct: 305 KTMTLKVKWADFTQITRSKTIVAPIASVAEMREIAELLLSPIFPVPKGIRLLGVTLSSLD 364
>gi|163856930|ref|YP_001631228.1| DNA polymerase IV [Bordetella petrii DSM 12804]
gi|163260658|emb|CAP42960.1| DNA polymerase IV [Bordetella petrii]
Length = 371
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 105/304 (34%), Positives = 171/304 (56%), Gaps = 17/304 (5%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARR+GV +AM A++LCP+ ++VP DF +Y S R++F ++ SLDEAYL
Sbjct: 51 ARRYGVHSAMSVARAQRLCPDAVYVPPDFNRYRDVSRQVRQIFARHTDLIEPLSLDEAYL 110
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T V ++ S ++A +R+ + +E LT SAGVAPN+ LAK+ SD +KP+G FV+
Sbjct: 111 DVT-VNKQGLPSATDVARSIRSEILQETRLTASAGVAPNKFLAKIASDWDKPDGLFVIKP 169
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFF- 186
+ V+ F+ LP+RK+ G+GKV + L + G++T ++ + ++ H +
Sbjct: 170 AQ--VLAFLQPLPVRKVPGVGKVMQARL-EALGVHTVGDLARHTAV---ELEHHFGRYGI 223
Query: 187 ----LSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGL 242
LS G+ P A ++ IS+E TF+V + L L +A + K+G
Sbjct: 224 RLHELSQGIDRREVQ-PDAPLQQ-ISAETTFAVDQPLHALSEPLGRLAVKVWGQAVKKGA 281
Query: 243 RGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL-LKAELPVS--LRLIGLRVT 299
GRT+ LKLKT F + TR +TL + +S+E + + A L + +LP RL G+ ++
Sbjct: 282 VGRTVVLKLKTDRFRILTRTLTLTRAPTSAEALAEVAFQLCARVDLPAGTRYRLAGVGMS 341
Query: 300 QFNE 303
F++
Sbjct: 342 NFDD 345
>gi|168184461|ref|ZP_02619125.1| DNA polymerase IV [Clostridium botulinum Bf]
gi|237796253|ref|YP_002863805.1| DNA polymerase IV [Clostridium botulinum Ba4 str. 657]
gi|182672433|gb|EDT84394.1| DNA polymerase IV [Clostridium botulinum Bf]
gi|229262753|gb|ACQ53786.1| DNA polymerase IV [Clostridium botulinum Ba4 str. 657]
Length = 349
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 104/303 (34%), Positives = 163/303 (53%), Gaps = 11/303 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++GV +AMP FIA+K CP I+VP +Y S+ K+ K P S+DEAYL
Sbjct: 48 ARKYGVHSAMPVFIAKKRCPFGIYVPGRHERYKEVSNNIFKILYKVTPIIEPVSIDEAYL 107
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
DIT + E I++AE ++ V E GLT S G++ N+ LAK+ SD NKP+G ++
Sbjct: 108 DITNIKEE----PIKVAEHIKKRVKNEMGLTLSVGISYNKFLAKLASDWNKPDGIKIIRQ 163
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCA-VFSHSTADFF 186
D + + + LPI KI GIGK + L ++ GI T E+M + C F + +
Sbjct: 164 D--MIPSILMPLPINKIHGIGKKSVEKLNNI-GIYTVEDMHKLSRDFCIEYFGKFGVEIY 220
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
+ G+ +R RKSI E T +K + + L + + +S ++ K G+
Sbjct: 221 ERI-RGIDYREVKVSRERKSIGKEITLKKDITNKEEMKKYLLDFSNKVSTNLYKRNSGGK 279
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHA-SVLLKAELPVSLRLIGLRVTQFNED 304
T+T+K+KT++F+ TR+ T+ YI ++I A +L +RLIGL V+ E+
Sbjct: 280 TVTVKIKTSNFQTHTRSKTVNDYIRDKDEIYNIACDILEHINFKEPIRLIGLTVSNLGEN 339
Query: 305 KVR 307
K++
Sbjct: 340 KIK 342
>gi|226950227|ref|YP_002805318.1| DNA polymerase IV [Clostridium botulinum A2 str. Kyoto]
gi|226843691|gb|ACO86357.1| DNA polymerase IV [Clostridium botulinum A2 str. Kyoto]
Length = 349
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 104/303 (34%), Positives = 163/303 (53%), Gaps = 11/303 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++GV +AMP FIA+K CP I+VP +Y S+ K+ K P S+DEAYL
Sbjct: 48 ARKYGVHSAMPVFIAKKRCPFGIYVPGRHERYKEVSNNIFKILYKVTPIIEPVSIDEAYL 107
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
DIT + E I++AE ++ V E GLT S G++ N+ LAK+ SD NKP+G ++
Sbjct: 108 DITNIKEE----PIKVAEHIKKRVKNEMGLTLSVGISYNKFLAKLASDWNKPDGIKIIRQ 163
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCA-VFSHSTADFF 186
D + + + LPI KI GIGK + L ++ GI T E+M + C F + +
Sbjct: 164 D--MIPSILMPLPINKIHGIGKKSVEKLNNI-GIYTVEDMHKLSRDFCIEYFGKFGVEIY 220
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
+ G+ +R RKSI E T +K + + L + + +S ++ K G+
Sbjct: 221 ERI-RGIDYREVKVSRERKSIGKEITLKKDITNKEEMKKYLLDFSNKVSTNLYKRNSGGK 279
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHA-SVLLKAELPVSLRLIGLRVTQFNED 304
T+T+K+KT++F+ TR+ T+ YI ++I A +L +RLIGL V+ E+
Sbjct: 280 TVTVKIKTSNFQTHTRSKTVNDYIRDKDEIYNIACDILEHINFKEPIRLIGLTVSNLGEN 339
Query: 305 KVR 307
K++
Sbjct: 340 KIK 342
>gi|387819084|ref|YP_005679431.1| DNA polymerase IV [Clostridium botulinum H04402 065]
gi|322807128|emb|CBZ04702.1| DNA polymerase IV [Clostridium botulinum H04402 065]
Length = 349
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 104/303 (34%), Positives = 163/303 (53%), Gaps = 11/303 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++GV +AMP FIA+K CP I+VP +Y S+ K+ K P S+DEAYL
Sbjct: 48 ARKYGVHSAMPVFIAKKRCPFGIYVPGRHERYKEVSNNIFKILYKITPIIEPVSIDEAYL 107
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
DIT + E I++AE ++ V E GLT S G++ N+ LAK+ SD NKP+G ++
Sbjct: 108 DITNIKEE----PIKVAEHIKKRVKNEMGLTLSVGISYNKFLAKLASDWNKPDGIKIIRQ 163
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCA-VFSHSTADFF 186
D + + + LPI KI GIGK + L ++ GI T E+M + C F + +
Sbjct: 164 D--MIPSILMPLPINKIHGIGKKSVEKLNNI-GIYTVEDMHKLSRDFCIEYFGKFGVEIY 220
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
+ G+ +R RKSI E T +K + + L + + +S ++ K G+
Sbjct: 221 ERI-RGIDYREVKVSRERKSIGKEITLKKDITNKEEMKKYLLDFSNKVSTNLYKRNSGGK 279
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHA-SVLLKAELPVSLRLIGLRVTQFNED 304
T+T+K+KT++F+ TR+ T+ YI ++I A +L +RLIGL V+ E+
Sbjct: 280 TVTVKIKTSNFQTHTRSKTVNDYIRDKDEIYNIACDILEHINFKEPIRLIGLTVSNLGEN 339
Query: 305 KVR 307
K++
Sbjct: 340 KIK 342
>gi|345016684|ref|YP_004819037.1| DNA polymerase IV [Thermoanaerobacter wiegelii Rt8.B1]
gi|344032027|gb|AEM77753.1| DNA polymerase IV [Thermoanaerobacter wiegelii Rt8.B1]
Length = 389
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 106/304 (34%), Positives = 165/304 (54%), Gaps = 23/304 (7%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++G+ +AMP ++A+KLCP IF+ +Y S + P S+DEAYL
Sbjct: 48 ARKYGIHSAMPMYMAKKLCPHGIFLSVRRKRYEEVSKQIFDILYSITPLVEPVSIDEAYL 107
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T + + I IA E++ V E GLT SAGV+ N+ LAK+ SD NKP+G V+
Sbjct: 108 DVTYIDKNPEI----IALEIKKKVKETTGLTISAGVSYNKFLAKLASDWNKPDGFMVITE 163
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
D + + LP+ K+ GIG+ +E L+ GINT +++L+ + S + F
Sbjct: 164 DMIP--DILKPLPVSKVYGIGEKSEQKLK-AMGINTIDDLLK-------LSQESLIEIFG 213
Query: 188 SVGL-------GLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQK 239
+GL G+ R KSI E+T T+DK LL + ++++S ++ +
Sbjct: 214 KLGLEIYNRIRGIDERPVETMREIKSIGKEKTLEKDTKDKKLLLHYVKLFSDIISEELVR 273
Query: 240 EGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKA-ELPVSLRLIGLRV 298
E L RT+T+K+KT F V T++ TL KYI EDI A ++++ +L +RLIGL V
Sbjct: 274 ERLYARTVTVKIKTPDFAVHTKSKTLNKYIRLGEDIYDVAYEIIESLKLDQYIRLIGLSV 333
Query: 299 TQFN 302
+ +
Sbjct: 334 SNLS 337
>gi|260551121|ref|ZP_05825325.1| nucleotidyltransferase/DNA polymerase [Acinetobacter sp. RUH2624]
gi|424057302|ref|ZP_17794819.1| DNA polymerase IV [Acinetobacter nosocomialis Ab22222]
gi|260405888|gb|EEW99376.1| nucleotidyltransferase/DNA polymerase [Acinetobacter sp. RUH2624]
gi|407440835|gb|EKF47352.1| DNA polymerase IV [Acinetobacter nosocomialis Ab22222]
Length = 351
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 112/302 (37%), Positives = 165/302 (54%), Gaps = 15/302 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FG+R+AM ARKLCP ++ + +F KY S +F +Y SLDEAYL
Sbjct: 47 AREFGLRSAMSMTQARKLCPHVVIIEPNFEKYRAISAQIHSIFQQYTTLIEPLSLDEAYL 106
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+TE ++ S E+A +R ++ + GLT SAGVAPN+ LAKV SD NKPNG FV+
Sbjct: 107 DVTENLKQIA-SATEVAMHIREDIFRQTGLTASAGVAPNKFLAKVASDWNKPNGLFVIKP 165
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
+ V +FI LP++KI G+GKVT+ L+ + ++T + LQK + AV H +
Sbjct: 166 SQ--VGSFIQDLPLKKIPGVGKVTQEKLQQL-ELHTLGD-LQK--IEEAVLVHHFGKYGQ 219
Query: 188 SVGL-GLGSTNTP-QA-RFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRG 244
+ L G N P QA R R+ IS E TF A +AE + ++K+ L
Sbjct: 220 QLYLYAQGIDNRPVQAERARQQISKETTFDSDFTLAQCQPYWHGLAEKVWQSLEKKQLNA 279
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS----LRLIGLRVTQ 300
R + +KLK +F+ + + + I S +D+++ +LL E+ +S RLIG+ V Q
Sbjct: 280 RGVNIKLKLKNFQTLQHSKSFKNPIHSQQDLIQVLFLLLN-EMHISENFQFRLIGIGVYQ 338
Query: 301 FN 302
Sbjct: 339 LQ 340
>gi|146338544|ref|YP_001203592.1| DNA polymerase IV [Bradyrhizobium sp. ORS 278]
gi|146191350|emb|CAL75355.1| DNA polymerase IV, devoid of proofreading, damage-inducible protein
P [Bradyrhizobium sp. ORS 278]
Length = 368
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 104/305 (34%), Positives = 162/305 (53%), Gaps = 19/305 (6%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR+AMP A++LCP+LIFV F Y S R +F ++ P SLDEAYL
Sbjct: 61 ARKFGVRSAMPSMTAKRLCPDLIFVKPRFEVYKAISQQIRAIFAEHTPIIEPLSLDEAYL 120
Query: 68 DITEVCRERGISGI----EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF 123
D+T+ + GI +IA ++R + E GL SAG++ N+ LAK+ SD KPNGQ+
Sbjct: 121 DVTD-----NLQGIPLARDIALQIRARIKAETGLNASAGISYNKFLAKLASDHRKPNGQY 175
Query: 124 VLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTA 183
V+ + A F+ LP+ + GIG T + GI+T ++ +
Sbjct: 176 VISPETGA--AFVEGLPVGRFHGIGPATAAKF-NALGIHTGLDIRNQTLPFLQQHFGKAG 232
Query: 184 DFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQ---KE 240
++ + G+ R RKSI +E TF+ D AE+ ++ +
Sbjct: 233 SYYYWISRGIDHRPVRANRIRKSIGAENTFAT--DLIEFEPMAAELQPLIDKVWRHCDAT 290
Query: 241 GLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRV 298
G RGRT+TLK+K A F+V TR+ ++ +SS ++ + + LL+AELP+ +RL+G+ +
Sbjct: 291 GNRGRTVTLKVKFADFDVITRSRSVATAVSSRAELERLSLALLQAELPLPKPVRLLGVSL 350
Query: 299 TQFNE 303
+ E
Sbjct: 351 SSLQE 355
>gi|433656055|ref|YP_007299763.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Thermoanaerobacterium thermosaccharolyticum M0795]
gi|433294244|gb|AGB20066.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Thermoanaerobacterium thermosaccharolyticum M0795]
Length = 379
Score = 159 bits (403), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 108/310 (34%), Positives = 178/310 (57%), Gaps = 19/310 (6%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVF-CKYDPNFMAA--SLDE 64
AR++G+ +AMP ++A++LCP IF+P F +Y ++++KVF Y+ + S+DE
Sbjct: 48 ARKYGIHSAMPMYMAKRLCPNGIFLPVRFERY---REVSKKVFDILYEVTDIVEPLSIDE 104
Query: 65 AYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFV 124
AYLD+T++ + +IA+E++ VY GLT SAGV+ N+ LAK+ SD NKP+G V
Sbjct: 105 AYLDVTDIDKNPE----DIAKEIKEKVYMTTGLTVSAGVSYNKFLAKIASDWNKPDGLMV 160
Query: 125 LPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTA 183
+ D V + L + K+ GIG+ + L+ + GI +++L+ L +F
Sbjct: 161 ITED--MVPDILRPLNVSKVYGIGEKSSERLKKI-GIEKVDDLLKLSEEELTNIFGKYGK 217
Query: 184 DFFLSV-GLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEG 241
+ + + G+ L T R KSI E T T+D +L + L + +S +++KE
Sbjct: 218 EIYDRIRGIDLRPVET--YRETKSIGKETTLKEDTDDIEILSKYLGGFSRTISLELKKEK 275
Query: 242 LRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK-AELPVSLRLIGLRVTQ 300
L RT+T+K+KT +F V T++ TL +YI S EDI AS +LK + + +RLIGL V+
Sbjct: 276 LYCRTVTVKIKTWNFTVHTKSRTLNEYIDSPEDIYNVASSILKESNISQPVRLIGLSVSN 335
Query: 301 FNEDKVRAPS 310
+ + ++ S
Sbjct: 336 LSTNNIKQLS 345
>gi|433469657|ref|ZP_20427074.1| impB/mucB/samB family protein [Neisseria meningitidis 98080]
gi|432202554|gb|ELK58614.1| impB/mucB/samB family protein [Neisseria meningitidis 98080]
Length = 352
Score = 159 bits (403), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 104/299 (34%), Positives = 163/299 (54%), Gaps = 17/299 (5%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG+ +AM A++LCP+ ++VP F Y S VF +Y SLDEAYL
Sbjct: 49 ARQFGLHSAMSVATAKRLCPQAVYVPPHFDLYRQVSAQIHAVFRRYTDLIEPLSLDEAYL 108
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T + + E+A+E+R +++ E GLT SAG+APN+ LAK+ SD KPNGQFVLP
Sbjct: 109 DVTRNFKNIPYAS-EVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPP 167
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADF 185
+ VM F+ +LP+ KI G+GKVT ++ + G+ T ++ ++G LL +H
Sbjct: 168 HK--VMAFLETLPLGKIPGVGKVTLKKMQSL-GMQTAGDLRRFERGELL----NHFGRYG 220
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLR 243
+ L G+ P R+ + ++ ED L L +AE L + ++ +
Sbjct: 221 YRLYDLARGTDERPVKAERERLQISTEITLPEDLPLEQAAGHLPHLAEDLWRQITRKNVE 280
Query: 244 GRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV----SLRLIGLRV 298
+++TLKLKT F + TR +T + +L+ A +L+ A +P + RLIG+ V
Sbjct: 281 AQSVTLKLKTYDFRIITRTLTYSSVLPDCASLLQAAQMLM-ARVPPQTEDAFRLIGIGV 338
>gi|325921296|ref|ZP_08183156.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Xanthomonas gardneri ATCC 19865]
gi|325548263|gb|EGD19257.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Xanthomonas gardneri ATCC 19865]
Length = 359
Score = 159 bits (403), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 114/303 (37%), Positives = 169/303 (55%), Gaps = 15/303 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FG+R+AMP A +LCP+ +FVP DF +Y S R++F ++ SLDEAYL
Sbjct: 47 ARTFGIRSAMPAMRAERLCPDAVFVPPDFARYKAVSRQVREIFHRHTDLVEPLSLDEAYL 106
Query: 68 DITEVCRERGIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP 126
D+T+ + G+ EIA+ +RT + EE LT SAG+APN+ LAK+ SD KP+GQFV+
Sbjct: 107 DVTQA--KTGMQLATEIAQLIRTQIREETQLTASAGIAPNKFLAKIASDWRKPDGQFVIA 164
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM-LQKGSLLCAVFSHSTADF 185
R V F+ LP+ +I G+GKV + L GI T ++ L+ L A F S
Sbjct: 165 PSR--VDAFLLPLPVNRIPGVGKVMDGKL-AALGIVTVSDLRLRPLEELQAHFG-SFGQS 220
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLR 243
G+ + +S+SSE TFS ED AL L + +AE ++
Sbjct: 221 LYRRARGIDERPVEPDQEVQSVSSEDTFS--EDIALDALDPHILRLAEKTWLATRRTERI 278
Query: 244 GRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELPVS--LRLIGLRVTQ 300
GRT+ LKLKT++F + TR+ T ++ +S E + + A L + ELP RL+G+ ++
Sbjct: 279 GRTVVLKLKTSNFRILTRSYTPEQPPASLEALAEIALALTRRVELPADTRYRLVGVGLSG 338
Query: 301 FNE 303
F++
Sbjct: 339 FSD 341
>gi|406888144|gb|EKD34717.1| DNA-directed DNA polymerase [uncultured bacterium]
Length = 335
Score = 159 bits (403), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 115/327 (35%), Positives = 175/327 (53%), Gaps = 12/327 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FG+ +AMP A +LCP IF ++Y S ++F +Y P SLDEA+L
Sbjct: 18 ARHFGIHSAMPSAQAARLCPHAIFTQPRMSRYKEISLKIMEIFRQYTPLVEPLSLDEAFL 77
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T + + S +A+++R ++ E LT SAG++ N+ LAKV SDINKPNG +P
Sbjct: 78 DVT-INNDNNPSATILADKIRRQIFRELQLTASAGISFNKFLAKVASDINKPNGIATIPP 136
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
+ + F+SSLPIRK G+GK TE + + GI T ++ Q + FF
Sbjct: 137 GK--ALEFLSSLPIRKFYGVGKATEQKMHQL-GITTGYDLRQWQEDNLILHFGKIGSFFH 193
Query: 188 SVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRT 246
+ G+ + R RKSI E T ++ T+D + L +AE L ++++ + G T
Sbjct: 194 DIVRGIDNRPVEPQRIRKSIGCETTLAIDTDDICKINDILTGLAEELGNSLKRKRIGGYT 253
Query: 247 LTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS--LRLIGLRVTQFNED 304
LTLK++ F TR++T++ + S++DIL LL A S +RL+GL V + +
Sbjct: 254 LTLKVRYLDFITITRSLTVKIPLFSTDDILPLLPTLLHATAAGSRKIRLLGLSVAKLADG 313
Query: 305 KVRAPSDPTQKTLTNFMTSGHASKKIV 331
+ S P Q L FMT G S+ +V
Sbjct: 314 E---KSIPRQLKLP-FMT-GINSRPVV 335
>gi|71756023|ref|XP_828926.1| DNA polymerase kappa [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|70834312|gb|EAN79814.1| DNA polymerase kappa, putative [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
Length = 571
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 103/310 (33%), Positives = 164/310 (52%), Gaps = 24/310 (7%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR G+R+ MPG+I K+CP L+ +P DF Y S+ R++ +YDPNF + LD+ L
Sbjct: 175 ARECGIRSGMPGYIGLKVCPNLLILPPDFDAYNEESNTVRRIVDEYDPNFTSLGLDDLTL 234
Query: 68 DITE-VCRERGISGIE-IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL 125
+++ + R G E +A ELR V+ E LT SAG+ P LAK+ S+INKPNGQ L
Sbjct: 235 EVSAYIERFEGTKTAEDVASELRVRVFGETKLTASAGIGPTAALAKIASNINKPNGQHDL 294
Query: 126 P-NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTAD 184
+ R VMT++ L +R + G+GKVTE +L+ GI T ++ + LC + ++
Sbjct: 295 NLHTRGDVMTYVRDLGLRSVPGVGKVTEALLKG-LGITTLSDIYNRRVELCYILHNNLFR 353
Query: 185 FFLSVGLGL-------GSTNTPQARF-----RKSISSERTFSVTEDKALLYRKLAEIAEM 232
F L +G+ + NT RK+ISSER+F V K L+ + I E
Sbjct: 354 FLLGASIGIMQWPDAATAANTENCEGATGGQRKAISSERSFYVLHSKEQLHEMIYSIFEE 413
Query: 233 LSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLR 292
+M++ + R ++L ++ +S+ + +L +Y S + + LL LP + +
Sbjct: 414 AYEEMRQNEMLCRQISLLVRWSSYRYQQYTKSLIQYSDDSATLRRAVDGLL---LPHAAK 470
Query: 293 -----LIGLR 297
L+G+R
Sbjct: 471 YSEMCLLGVR 480
>gi|385341648|ref|YP_005895519.1| DNA polymerase IV [Neisseria meningitidis M01-240149]
gi|385857505|ref|YP_005904017.1| DNA polymerase IV [Neisseria meningitidis NZ-05/33]
gi|325201854|gb|ADY97308.1| DNA polymerase IV [Neisseria meningitidis M01-240149]
gi|325208394|gb|ADZ03846.1| DNA polymerase IV [Neisseria meningitidis NZ-05/33]
Length = 352
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 104/299 (34%), Positives = 163/299 (54%), Gaps = 17/299 (5%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG+ +AM A++LCP+ ++VP F Y S VF +Y SLDEAYL
Sbjct: 49 ARQFGLHSAMSVATAKRLCPQAVYVPPHFDLYRQVSAQIHAVFRRYTDLIEPLSLDEAYL 108
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T + + E+A+E+R +++ E GLT SAG+APN+ LAK+ SD KPNGQFVLP
Sbjct: 109 DVTRNFKNIPYAS-EVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPP 167
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADF 185
+ VM F+ +LP+ KI G+GKVT ++ + G+ T ++ ++G LL +H
Sbjct: 168 HK--VMAFLETLPLGKIPGVGKVTLKKMQSL-GMRTAGDLRRFERGELL----NHFGRYG 220
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLR 243
+ L G+ P R+ + ++ ED L L +AE L + ++ +
Sbjct: 221 YRLYDLARGTDERPVKAERERLQISTEITLPEDLPLEQAAGHLPHLAEDLWRQITRKNVE 280
Query: 244 GRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV----SLRLIGLRV 298
+++TLKLKT F + TR +T + +L+ A +L+ A +P + RLIG+ V
Sbjct: 281 AQSVTLKLKTYDFRIITRTLTYSSVLPDCASLLQAAQMLM-ARVPPQTEDAFRLIGIGV 338
>gi|393909444|gb|EJD75452.1| CBR-POLK-1 protein [Loa loa]
Length = 414
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 95/266 (35%), Positives = 136/266 (51%), Gaps = 60/266 (22%)
Query: 20 FIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDIT--------- 70
F +KLCP L + F KY S + RK+F YDP+F A LDEAY+++T
Sbjct: 144 FYCKKLCPHLKIISGSFEKYREASSVARKIFRDYDPDFHADGLDEAYINLTTYIQNRFLT 203
Query: 71 ------------------------------------EVC----------RERGISGI--- 81
E+C R+R G+
Sbjct: 204 GSAEHERIRYMGECVCRLPLITENEMYHLVSAEITEEICTKCKKLRKCVRDRITFGVDVD 263
Query: 82 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 141
EI E+R V + GLTCSAG+APN LLAKVCS+INKPNGQ+ L N+R AV+ F+ LPI
Sbjct: 264 EIVHEIRFRVEQAVGLTCSAGIAPNSLLAKVCSNINKPNGQYRLLNEREAVLNFLKDLPI 323
Query: 142 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQA 201
RKI GIG VTE +L+ + G+ C ++ ++ ++ +F+ + ++FL + G+ +
Sbjct: 324 RKISGIGPVTEAVLKGI-GLEKCGDLYEQRGIISLLFTQRSCEYFLRIARGISHVFSVDR 382
Query: 202 RF-RKSISSERTFSVTEDKALLYRKL 226
+ RKSIS+ERTF T D L ++
Sbjct: 383 KIRRKSISTERTFHPTGDLGALLEEM 408
>gi|269214646|ref|ZP_05986970.2| DNA-directed DNA polymerase [Neisseria lactamica ATCC 23970]
gi|269209306|gb|EEZ75761.1| DNA-directed DNA polymerase [Neisseria lactamica ATCC 23970]
Length = 368
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 103/298 (34%), Positives = 161/298 (54%), Gaps = 15/298 (5%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG+ +AM A++LCP+ ++VP F Y S VF +Y SLDEAYL
Sbjct: 65 ARQFGLHSAMSVATAKRLCPQAVYVPPHFDLYRQVSAQIHAVFRRYTDLIEPLSLDEAYL 124
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T + +G ++A+E+R +++ E GLT SAG+APN+ LAK+ SD KPNGQFVLP
Sbjct: 125 DVTRNFKNIPYAG-DVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPP 183
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADF 185
+ VM F+ +LP+ KI G+GKVT ++ + G+ T ++ ++G LL +H
Sbjct: 184 HK--VMAFLETLPLGKIPGVGKVTLKKMQSL-GMRTAGDLRRFERGELL----NHFGRYG 236
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLR 243
+ L G+ P R+ + ++ ED L L +AE L + ++ +
Sbjct: 237 YRLYDLARGTDERPVEAERERLQISTEITLPEDLPLEQAAGHLPHLAEDLWRQITRKNVE 296
Query: 244 GRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV---SLRLIGLRV 298
+++TLKLKT F + TR +T + +L+ A +L P + RLIG+ V
Sbjct: 297 AQSVTLKLKTYDFRIITRTLTYSSVLPDCASLLQAAQMLTNRVPPQTEDAFRLIGIGV 354
>gi|27375972|ref|NP_767501.1| DNA polymerase IV [Bradyrhizobium japonicum USDA 110]
gi|27349111|dbj|BAC46126.1| DNA-damage-inducible protein [Bradyrhizobium japonicum USDA 110]
Length = 366
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 105/304 (34%), Positives = 163/304 (53%), Gaps = 17/304 (5%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR+AMP A++ CP+LIFV F Y S R++F ++ P SLDEAYL
Sbjct: 60 ARKFGVRSAMPSVTAKRQCPDLIFVRPRFEVYKAISRQIREIFAEHTPIIEPLSLDEAYL 119
Query: 68 DITEVCRERGISGIEIAEE----LRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF 123
D+TE + GI +A + +R + E GL SAG++ N+ LAK+ SD KPNGQF
Sbjct: 120 DVTE-----NLQGIPLARDVALRIREKIKAETGLNASAGISYNKFLAKLASDHRKPNGQF 174
Query: 124 VLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEML-QKGSLLCAVFSHST 182
V+ + F+ +LP+ K GIG T + + GI T +M Q + A F +
Sbjct: 175 VISPEMGP--AFVEALPVGKFHGIGPATSAKM-NALGIFTGRDMRNQTLEFMNANFGKAG 231
Query: 183 ADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDK-ALLYRKLAEIAEMLSADMQKEG 241
A ++ + G+ R RKSI +E TF D+ L L + + + + G
Sbjct: 232 A-YYYWISRGVDERPVRANRIRKSIGAETTFQADLDEFDALVAALKPLVDKVWRHCEATG 290
Query: 242 LRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS--LRLIGLRVT 299
RGRT+TLK+K A FE+ TR+ + ++ +D+ + LL+ E+P+ +RL+G+ ++
Sbjct: 291 NRGRTVTLKIKFADFEIITRSRSAPTPVAGRDDLERLTCGLLEVEMPLPKRVRLLGVSLS 350
Query: 300 QFNE 303
+
Sbjct: 351 ALQD 354
>gi|445429972|ref|ZP_21438363.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC021]
gi|444761010|gb|ELW85437.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC021]
Length = 351
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 111/301 (36%), Positives = 164/301 (54%), Gaps = 13/301 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FG+R+AM ARKLCP+++ + +F KY S +F +Y SLDEAYL
Sbjct: 47 AREFGLRSAMSMSQARKLCPQVVIIEPNFEKYRAISAQIHSIFQQYTTLIEPLSLDEAYL 106
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+TE ++ S E+A +R ++ GLT SAGVAPN+ LAKV SD NKPNG FV+
Sbjct: 107 DVTENLKQIA-SATEVAMHIREDIFRLTGLTASAGVAPNKFLAKVASDWNKPNGLFVIKP 165
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
++A FI LP++KI G+GKVT+ L+ + ++T + LQK + AV H +
Sbjct: 166 SQVA--NFIQDLPLKKIPGVGKVTQEKLQQL-ELHTLGD-LQK--IEEAVLVHHFGKYGQ 219
Query: 188 SVGL-GLGSTNTP-QA-RFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRG 244
+ L G N P QA R R+ IS E TF A +AE + ++K+ L
Sbjct: 220 QLYLYAQGIDNRPVQAERARQQISKETTFDSDFTLAQCQPYWHGLAEKVWQSLEKKQLNA 279
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELP--VSLRLIGLRVTQF 301
R + +KLK +F+ + + + I S +D+++ +LL + +P RLIG+ V Q
Sbjct: 280 RGVNIKLKLKNFQTLQHSKSFKNPIHSQQDLIQVLFLLLNEMHIPENFQFRLIGIGVYQL 339
Query: 302 N 302
Sbjct: 340 Q 340
>gi|390944951|ref|YP_006408712.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Belliella baltica DSM 15883]
gi|390418379|gb|AFL85957.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Belliella baltica DSM 15883]
Length = 360
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 112/305 (36%), Positives = 169/305 (55%), Gaps = 13/305 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR+AM G +A CP LIFV F +Y S R++F +Y SLDEA+L
Sbjct: 50 ARKFGVRSAMSGKMAALKCPHLIFVRPRFERYKEISLQIREIFFEYTDLVEPLSLDEAFL 109
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQ-FVLP 126
D+TE E S +A+E+R + + GL SAG++ N+ LAK+ SDINKPNGQ +LP
Sbjct: 110 DVTENKFENP-SATLLAKEIRAKIKSQTGLNASAGISYNKFLAKIASDINKPNGQAVILP 168
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADF 185
+ A F+ LPI K GIGKVT ++ FGI+ +++ + L F S F
Sbjct: 169 KEAEA---FLEKLPIEKFFGIGKVTAEKMKK-FGIHQGKDLKEYSLQFLTKKFGKSGLHF 224
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRK-LAEIAEMLSADMQKEGLRG 244
+ ++ G+ + R RKSIS+E TF + + + L + E L ++K ++G
Sbjct: 225 Y-NIVRGIHMSEVQPNRERKSISAENTFEKDLPTQVEWEEALKGVFEELMRRIEKTRIKG 283
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFN- 302
RT+TLK+K F ++TR+ + +Y E I + LL E L ++RL G+ ++ N
Sbjct: 284 RTITLKIKYKDFTLQTRSKSFDQY-PDKEKIWETVLELLNQERLTDAVRLFGIGISNLNL 342
Query: 303 -EDKV 306
E+K+
Sbjct: 343 LEEKI 347
>gi|390933370|ref|YP_006390875.1| DNA polymerase IV [Thermoanaerobacterium saccharolyticum
JW/SL-YS485]
gi|389568871|gb|AFK85276.1| DNA polymerase IV [Thermoanaerobacterium saccharolyticum
JW/SL-YS485]
Length = 379
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 105/306 (34%), Positives = 170/306 (55%), Gaps = 11/306 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++GV +AMP ++A+ LCP +F+P F +Y S+ + S+DEAYL
Sbjct: 48 ARKYGVHSAMPMYMAKTLCPHGVFLPVRFQRYREVSEKVFDILYSVTDIVEPLSIDEAYL 107
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T++ + +IA+E++ VY GLT SAGV+ N+ LAK+ SD NKP+G V+
Sbjct: 108 DVTDIDKNPE----DIAKEIKEKVYMTTGLTVSAGVSYNKFLAKIASDWNKPDGLMVITE 163
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHSTADFF 186
D V + L + K+ GIGK + L+ + G+ +++L+ L +F + +
Sbjct: 164 D--MVPDILRPLSVSKVYGIGKKSSERLKKI-GVEKVDDLLKLSQDELRNIFGKYGKEIY 220
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
+ G+ S R KSI E T T D LL + L A ++S++++ EGL R
Sbjct: 221 DRIR-GIDSRPVETYRETKSIGKETTLKKDTSDVDLLLKYLRGFANIVSSELKSEGLYCR 279
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHA-SVLLKAELPVSLRLIGLRVTQFNED 304
T+T+K+KT++F V TR+ TL +YI +DI A S+ +A++ +RLIGL V+ +
Sbjct: 280 TVTVKIKTSNFIVHTRSRTLNEYIDLPDDIYSVAESIFKEAKIIQPVRLIGLSVSNLSAI 339
Query: 305 KVRAPS 310
K++ S
Sbjct: 340 KIKQLS 345
>gi|365886913|ref|ZP_09425808.1| DNA polymerase IV, devoid of proofreading, damage-inducible protein
P [Bradyrhizobium sp. STM 3809]
gi|365337547|emb|CCD98339.1| DNA polymerase IV, devoid of proofreading, damage-inducible protein
P [Bradyrhizobium sp. STM 3809]
Length = 368
Score = 159 bits (402), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 103/304 (33%), Positives = 166/304 (54%), Gaps = 17/304 (5%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR+AMP A++LCP+LIFV F Y S R +F ++ P SLDEAYL
Sbjct: 61 ARKFGVRSAMPSVTAKRLCPDLIFVKPRFEVYKAISQQIRAIFAEHTPIIEPLSLDEAYL 120
Query: 68 DITEVCRERGISGI----EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF 123
D+T+ + GI +IA ++R + E GL SAG++ N+ LAK+ SD KPNGQ+
Sbjct: 121 DVTD-----NLQGIPLARDIALQIRARIKAETGLNASAGISYNKFLAKLASDHRKPNGQY 175
Query: 124 VLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTA 183
V+ + A F+ SLP+ + GIG T + GI+T ++ +
Sbjct: 176 VISPEMGA--AFVESLPVGRFHGIGPATAAKF-NGLGIHTGLDIRNQTLPFLQHHFGKAG 232
Query: 184 DFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEG 241
++ + G+ R RKSI +E TF+ +TE + + +L + + + + G
Sbjct: 233 SYYYWISRGIDHRPVRANRIRKSIGAENTFATDLTEFEPMAA-ELQPLIDKVWRHCEATG 291
Query: 242 LRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVT 299
RGRT+TL++K A F++ TR+ ++ +SS ++ + LL+AE+PV +RL+G+ ++
Sbjct: 292 NRGRTVTLRVKFADFDMITRSRSVATAVSSRAELEHLSLALLQAEMPVKKPVRLLGVSLS 351
Query: 300 QFNE 303
E
Sbjct: 352 SLRE 355
>gi|313668564|ref|YP_004048848.1| impB/mucB/samB family protein [Neisseria lactamica 020-06]
gi|313006026|emb|CBN87485.1| impB/mucB/samB family protein [Neisseria lactamica 020-06]
Length = 352
Score = 159 bits (402), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 107/300 (35%), Positives = 164/300 (54%), Gaps = 19/300 (6%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG+ +AM A++LCP+ ++VP F Y S VF +Y SLDEAYL
Sbjct: 49 ARQFGLHSAMSVATAKRLCPQAVYVPPHFDLYRQVSAQIHAVFRRYTDLIEPLSLDEAYL 108
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T + +G ++A+E+R +++ E GLT SAG+APN+ LAK+ SD KPNGQFVLP
Sbjct: 109 DVTRNFKNIPYAG-DVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPP 167
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADF 185
+ VM F+ +LP+ KI G+GKVT ++ + G+ T ++ ++G LL +H
Sbjct: 168 QK--VMAFLETLPLGKIPGVGKVTLKKMQSL-GMRTAGDLRRFERGELL----NHFGRYG 220
Query: 186 FLSVGLGLGSTNTP--QARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEG 241
+ L G+ P R R IS+E ++ ED L L +AE L + ++
Sbjct: 221 YRLYDLARGTDERPVEAERERLQISTE--ITLPEDLPLEQAAGHLPHLAEDLWRQITRKN 278
Query: 242 LRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV---SLRLIGLRV 298
+ +++TLKLKT F + TR +T + +L+ A +L P + RLIG+ V
Sbjct: 279 VEAQSVTLKLKTYDFRIITRTLTYSSVLPDCASLLQAAQMLTNRVPPQTEDAFRLIGIGV 338
>gi|421096936|ref|ZP_15557635.1| ImpB/MucB/SamB family protein [Leptospira borgpetersenii str.
200901122]
gi|410800181|gb|EKS02242.1| ImpB/MucB/SamB family protein [Leptospira borgpetersenii str.
200901122]
Length = 362
Score = 159 bits (402), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 100/279 (35%), Positives = 158/279 (56%), Gaps = 9/279 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR+AMP A +L P+ IFV F Y SD R++F +Y SLDE YL
Sbjct: 50 ARKFGVRSAMPCSKAAQLAPQAIFVSPRFEVYKEVSDRIREIFLEYTDRVEMLSLDEGYL 109
Query: 68 DITEVCRERGIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVL 125
D+T ++ I + IA+E+R +++ GLT SAGV ++ +AK+ S+ NKPNG VL
Sbjct: 110 DVT--FNKKNIPFAVTIAKEIRAEIFKRTGLTASAGVGNSKFIAKLASEKNKPNGLVVVL 167
Query: 126 PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADF 185
P+D V+TFI LP+ G+GKVT ++++ GI+T +++ K + T +
Sbjct: 168 PDD---VITFIDPLPVSSFHGVGKVTAQKMKEL-GIHTGKDLRTKNIDELVQYFGKTGIY 223
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSVTE-DKALLYRKLAEIAEMLSADMQKEGLRG 244
+ + G R RKS+ +E TF + D+ L ++L E+A + ++K G
Sbjct: 224 YYKISRGEDEREVESCRERKSLGAENTFDQDKIDQEDLLQQLREVAVEVERRLKKRNFAG 283
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL 283
+TLTLK+K F ++TR+ TL + I S++++ A+ L
Sbjct: 284 KTLTLKIKFQDFSLKTRSKTLSEPIFSADELYSIAAELF 322
>gi|425743150|ref|ZP_18861241.1| putative DNA polymerase IV [Acinetobacter baumannii WC-487]
gi|425484302|gb|EKU50707.1| putative DNA polymerase IV [Acinetobacter baumannii WC-487]
Length = 351
Score = 159 bits (402), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 111/301 (36%), Positives = 164/301 (54%), Gaps = 13/301 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FG+R+AM ARKLCP ++ + +F KY S +F +Y SLDEAYL
Sbjct: 47 AREFGLRSAMSMSQARKLCPHVVIIEPNFEKYRAISAQIHSIFQQYTTLIEPLSLDEAYL 106
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+TE ++ S E+A +R ++ GLT SAGVAPN+ LAKV SD NKPNG FV+
Sbjct: 107 DVTENLKQIA-SATEVAMHIREDIFRLTGLTASAGVAPNKFLAKVASDWNKPNGLFVIKP 165
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
++A +FI LP++KI G+GKVT+ L+ + ++T + LQK + AV H +
Sbjct: 166 SQVA--SFIQDLPLKKIPGVGKVTQEKLQQL-ELHTLGD-LQK--IEEAVLVHHFGKYGQ 219
Query: 188 SVGL-GLGSTNTP-QA-RFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRG 244
+ L G N P QA R R+ IS E TF A +AE + ++K+ L
Sbjct: 220 QLYLYAQGIDNRPVQAERARQQISKETTFDSDFTLAQCQPYWHGLAEKVWQSLEKKQLNA 279
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELP--VSLRLIGLRVTQF 301
R + +KLK +F+ + + + I S +D+++ +LL + +P RLIG+ V Q
Sbjct: 280 RGVNIKLKLKNFQTLQHSKSFKNPIHSQQDLIQVLFLLLNEMHIPENFQFRLIGIGVYQL 339
Query: 302 N 302
Sbjct: 340 Q 340
>gi|294625057|ref|ZP_06703705.1| DNA polymerase IV [Xanthomonas fuscans subsp. aurantifolii str.
ICPB 11122]
gi|292600642|gb|EFF44731.1| DNA polymerase IV [Xanthomonas fuscans subsp. aurantifolii str.
ICPB 11122]
Length = 359
Score = 159 bits (401), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 110/302 (36%), Positives = 165/302 (54%), Gaps = 13/302 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FG+R+AMP A +LCP+ IFVP DF +Y S R++F ++ SLDEAYL
Sbjct: 47 ARTFGIRSAMPAVRAERLCPDAIFVPPDFARYKAVSRQVREIFHRHTDLVEPLSLDEAYL 106
Query: 68 DITEVCRERGIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP 126
D+T+ + G+ E+A+ +RT + EE LT SAG+APN+ LAK+ SD KP+GQFV+
Sbjct: 107 DVTQA--KTGMQLATEVAQLIRTQIREETQLTASAGIAPNKFLAKIASDWRKPDGQFVIA 164
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFF 186
R V F+ L + +I G+GKV + L GI T ++ Q+ S
Sbjct: 165 PSR--VDAFLLPLKVNRIPGVGKVMDGKL-AALGIVTVADLRQRPLEELQAHFGSFGQSL 221
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRG 244
G+ + +S+SSE TFS ED AL L + +AE ++ G
Sbjct: 222 YRRARGIDERPVEPDQEVQSVSSEDTFS--EDLALDALDPHILRLAEKTWLATRRTERIG 279
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELPVS--LRLIGLRVTQF 301
RT+ LKLKT++F + TR+ T ++ +S E + + A L + ELP RL+G+ ++ F
Sbjct: 280 RTVVLKLKTSNFRILTRSYTPEQPPTSQEALAQIALALTRRVELPAQTRYRLVGVGLSGF 339
Query: 302 NE 303
++
Sbjct: 340 SD 341
>gi|385338282|ref|YP_005892155.1| DNA polymerase IV (Pol IV) [Neisseria meningitidis WUE 2594]
gi|433475868|ref|ZP_20433205.1| impB/mucB/samB family protein [Neisseria meningitidis 88050]
gi|433513766|ref|ZP_20470555.1| impB/mucB/samB family protein [Neisseria meningitidis 63049]
gi|433515222|ref|ZP_20471995.1| impB/mucB/samB family protein [Neisseria meningitidis 2004090]
gi|433518610|ref|ZP_20475345.1| impB/mucB/samB family protein [Neisseria meningitidis 96023]
gi|433524427|ref|ZP_20481085.1| impB/mucB/samB family protein [Neisseria meningitidis 97020]
gi|433528518|ref|ZP_20485127.1| impB/mucB/samB family protein [Neisseria meningitidis NM3652]
gi|433530726|ref|ZP_20487310.1| impB/mucB/samB family protein [Neisseria meningitidis NM3642]
gi|433532988|ref|ZP_20489550.1| impB/mucB/samB family protein [Neisseria meningitidis 2007056]
gi|433534767|ref|ZP_20491305.1| impB/mucB/samB family protein [Neisseria meningitidis 2001212]
gi|319410696|emb|CBY91075.1| DNA polymerase IV (Pol IV) [Neisseria meningitidis WUE 2594]
gi|432208977|gb|ELK64948.1| impB/mucB/samB family protein [Neisseria meningitidis 88050]
gi|432247075|gb|ELL02518.1| impB/mucB/samB family protein [Neisseria meningitidis 63049]
gi|432251130|gb|ELL06502.1| impB/mucB/samB family protein [Neisseria meningitidis 96023]
gi|432255018|gb|ELL10351.1| impB/mucB/samB family protein [Neisseria meningitidis 2004090]
gi|432258654|gb|ELL13935.1| impB/mucB/samB family protein [Neisseria meningitidis 97020]
gi|432265319|gb|ELL20515.1| impB/mucB/samB family protein [Neisseria meningitidis NM3652]
gi|432265536|gb|ELL20728.1| impB/mucB/samB family protein [Neisseria meningitidis NM3642]
gi|432266344|gb|ELL21530.1| impB/mucB/samB family protein [Neisseria meningitidis 2007056]
gi|432271036|gb|ELL26166.1| impB/mucB/samB family protein [Neisseria meningitidis 2001212]
Length = 352
Score = 159 bits (401), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 104/299 (34%), Positives = 163/299 (54%), Gaps = 17/299 (5%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG+ +AM A++LCP+ ++VP F Y S VF +Y SLDEAYL
Sbjct: 49 ARQFGLHSAMSVATAKRLCPQAVYVPPHFDLYRQVSAQIHAVFRRYTDLIEPLSLDEAYL 108
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T + + E+A+E+R +++ E GLT SAG+APN+ LAK+ SD KPNGQFVLP
Sbjct: 109 DVTRNFKNIPYAS-EVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPP 167
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADF 185
+ VM F+ +LP+ KI G+GKVT ++ + G+ T ++ ++G LL +H
Sbjct: 168 HK--VMAFLETLPLGKIPGVGKVTLKKMQSL-GMQTAGDLRRFERGELL----NHFGRYG 220
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLR 243
+ L G+ P R+ + ++ ED L L +AE L + ++ +
Sbjct: 221 YRLYDLARGTDERPVKAERERLQISTEITLPEDLPLEQAAGHLPHLAEDLWRQITRKNVE 280
Query: 244 GRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV----SLRLIGLRV 298
+++TLKLKT F + TR +T + +L+ A +L+ A +P + RLIG+ V
Sbjct: 281 AQSVTLKLKTYDFRIITRTLTYSSVLPDCTALLQAAQMLM-ARVPPQTEDAFRLIGIGV 338
>gi|218768451|ref|YP_002342963.1| DNA polymerase IV [Neisseria meningitidis Z2491]
gi|433480065|ref|ZP_20437352.1| impB/mucB/samB family protein [Neisseria meningitidis 63041]
gi|433520223|ref|ZP_20476941.1| impB/mucB/samB family protein [Neisseria meningitidis 65014]
gi|433541303|ref|ZP_20497752.1| impB/mucB/samB family protein [Neisseria meningitidis 63006]
gi|22095638|sp|Q9JRG1.1|DPO4_NEIMA RecName: Full=DNA polymerase IV; Short=Pol IV
gi|6900413|emb|CAB72023.1| putative DNA-damage inducible protein P [Neisseria meningitidis]
gi|121052459|emb|CAM08795.1| impB/mucB/samB family protein [Neisseria meningitidis Z2491]
gi|432215025|gb|ELK70916.1| impB/mucB/samB family protein [Neisseria meningitidis 63041]
gi|432253761|gb|ELL09100.1| impB/mucB/samB family protein [Neisseria meningitidis 65014]
gi|432276950|gb|ELL32002.1| impB/mucB/samB family protein [Neisseria meningitidis 63006]
Length = 352
Score = 159 bits (401), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 104/299 (34%), Positives = 163/299 (54%), Gaps = 17/299 (5%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG+ +AM A++LCP+ ++VP F Y S VF +Y SLDEAYL
Sbjct: 49 ARQFGLHSAMSVATAKRLCPQAVYVPPHFDLYRQVSAQIHAVFRRYTDLIEPLSLDEAYL 108
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T + + E+A+E+R +++ E GLT SAG+APN+ LAK+ SD KPNGQFVLP
Sbjct: 109 DVTRNFKNIPYAS-EVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPP 167
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADF 185
+ VM F+ +LP+ KI G+GKVT ++ + G+ T ++ ++G LL +H
Sbjct: 168 HK--VMAFLETLPLGKIPGVGKVTLKKMQSL-GMQTAGDLRRFERGELL----NHFGRYG 220
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLR 243
+ L G+ P R+ + ++ ED L L +AE L + ++ +
Sbjct: 221 YRLYDLARGTDERPVKAERECLQISTEITLPEDLPLEQAAGHLPHLAEDLWRQITRKNVE 280
Query: 244 GRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV----SLRLIGLRV 298
+++TLKLKT F + TR +T + +L+ A +L+ A +P + RLIG+ V
Sbjct: 281 AQSVTLKLKTYDFRIITRTLTYSSVLPDCTALLQAAQMLM-ARVPPQTEDAFRLIGIGV 338
>gi|344199852|ref|YP_004784178.1| DNA polymerase IV [Acidithiobacillus ferrivorans SS3]
gi|343775296|gb|AEM47852.1| DNA polymerase IV [Acidithiobacillus ferrivorans SS3]
Length = 399
Score = 159 bits (401), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 109/300 (36%), Positives = 158/300 (52%), Gaps = 13/300 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFG+ +AM AR LCP+ IF+ Y S L + Y P SLDEA+L
Sbjct: 80 ARRFGIHSAMTAARARSLCPQAIFLRPRMEAYREASRLVMGILRCYTPLVEPLSLDEAFL 139
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D T + GI ++IA E+R + E GLT SAGV+ N+LLAK+ SD KPNG FV+P
Sbjct: 140 DATAATAD-GILAVQIAREIRARIERETGLTASAGVSYNKLLAKLASDWRKPNGLFVVPP 198
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFF 186
+R +TF++ LP+ K+ G+G T L GI+T ++ L A F T +F
Sbjct: 199 ERG--LTFLAPLPVSKLHGVGPATVKKLSS-MGIHTVLDLRNMSREALIAQFG-KTGLWF 254
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLRGR 245
+ G+ +R RKS+ +ERTF D ++ L ++A ++A +Q GL GR
Sbjct: 255 YEIARGIDLRPVQPSRQRKSVGTERTFPKNLADPKVMLATLQQMAGQVAARLQVLGLAGR 314
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELP------VSLRLIGLRVT 299
T+++K + F TRA T + I +E I LL +P S+RL+G+ V+
Sbjct: 315 TVSIKARFPDFATVTRAHTDAQAIWRTEAISALLPGLLAKAIPTRLPVHASVRLLGVTVS 374
>gi|167645987|ref|YP_001683650.1| DNA-directed DNA polymerase [Caulobacter sp. K31]
gi|167348417|gb|ABZ71152.1| DNA-directed DNA polymerase [Caulobacter sp. K31]
Length = 373
Score = 159 bits (401), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 104/304 (34%), Positives = 161/304 (52%), Gaps = 17/304 (5%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR+AMP A CP+LIFVP F Y S +F Y SLDEAYL
Sbjct: 50 ARKFGVRSAMPSTTALAKCPQLIFVPPRFEVYKAVSRQIHAIFADYTDLIEPLSLDEAYL 109
Query: 68 DITEVCRERGIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP 126
D+T RG++ + A E+R + E GLT SAG++ N+ LAK+ SD KPNGQFV+P
Sbjct: 110 DVT--ANRRGLATATDTALEIRARILETTGLTASAGISYNKFLAKLASDQRKPNGQFVVP 167
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFF 186
+ F+ +LPI + G+G VTE ++ + I+T E++ ++ + ++
Sbjct: 168 PGKGEA--FVQTLPIGRFYGVGAVTEAKMKSL-DIHTGEDLHRQSLAFLQQHFGKSGPWY 224
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSAD-----MQKEG 241
++ G R RKS SE TF D+ + + E + AD QK G
Sbjct: 225 YAIARGEDHRRVNPDRVRKSSGSETTF----DQDHIAPEPIEAGVLAMADDVWAWCQKTG 280
Query: 242 LRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELP--VSLRLIGLRVT 299
R RT+T+K+K A F+ TR+ +L I+ E + + L+++ P + +RL+G+ ++
Sbjct: 281 ARARTVTVKIKWADFQQATRSRSLPSPIADHETLRRTGLDLIRSVYPPRMGIRLVGVTLS 340
Query: 300 QFNE 303
F++
Sbjct: 341 NFDQ 344
>gi|357418538|ref|YP_004931558.1| DNA polymerase IV [Pseudoxanthomonas spadix BD-a59]
gi|355336116|gb|AER57517.1| DNA polymerase IV [Pseudoxanthomonas spadix BD-a59]
Length = 366
Score = 159 bits (401), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 110/308 (35%), Positives = 160/308 (51%), Gaps = 25/308 (8%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++GVR+AMPG AR+LCP+ IFV DF +Y S R++F + SLDEAYL
Sbjct: 47 ARKYGVRSAMPGVTARRLCPQAIFVAPDFARYRAVSRQIREIFLAHTDLVEPLSLDEAYL 106
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T R S A+ +R ++E GLT SAG+APN+ LAK+ SD NKPNGQ+V+
Sbjct: 107 DVT-APRIASSSATATAQAIRAQIFETTGLTASAGIAPNKFLAKIASDWNKPNGQYVIKP 165
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM---------LQKGSLLCAVF 178
+ V F++ L + +I G+GKV E L ++ G+ T ++ L+ G A++
Sbjct: 166 AQ--VEAFLTPLKVGRIPGVGKVAERKLAEL-GVATVGDLRRFTLDELQLRFGRFGAALY 222
Query: 179 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQ 238
+ G+ + +SIS+E TF V A L +A +A+
Sbjct: 223 RRAR---------GIDERPVQPDQQVQSISAEDTFEVDLPLAELGPAIARMADKAWRATG 273
Query: 239 KEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELPVS--LRLIG 295
K G T+ LKLKTA F + TR+ T + SS A L + +LPV RL+G
Sbjct: 274 KTARIGHTVVLKLKTAQFRILTRSFTPEAPPSSLAQFTAIALALRDRVDLPVDTRYRLVG 333
Query: 296 LRVTQFNE 303
+ + F E
Sbjct: 334 VGLAGFRE 341
>gi|421766181|ref|ZP_16202958.1| DNA polymerase IV [Lactococcus garvieae DCC43]
gi|407625350|gb|EKF52056.1| DNA polymerase IV [Lactococcus garvieae DCC43]
Length = 365
Score = 159 bits (401), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 108/311 (34%), Positives = 171/311 (54%), Gaps = 22/311 (7%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FG+ +AM A LCP+ IF+ ++ KY S R++F +Y AAS+DEAYL
Sbjct: 61 ARVFGIHSAMSAKEAYDLCPQAIFISGNYEKYRAVSKQVREIFNRYTEEVEAASIDEAYL 120
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLP 126
D+TE + S I+IA+ ++ +Y E GLTCSAGV+ N+ LAK+ SD KP+G ++P
Sbjct: 121 DVTE-NKIGSTSAIKIAKLIQHDIYVELGLTCSAGVSYNKFLAKIASDYEKPHGLTVIMP 179
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADF 185
+D F++ LP+ K G+GK T L D+ GI ++ + L L F +
Sbjct: 180 DD---AKEFLAELPVEKFHGVGKATGAKLHDM-GIFKGTDIQKVDPLDLADRFGIYGWNL 235
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLY------RKLAEIAEMLSADMQK 239
FL G+ + +R RKS+ ERT+ LLY ++LA ++E +S ++ +
Sbjct: 236 FLKAN-GIHDSAVVTSRQRKSVGKERTYG-----KLLYQIEDIKQELANLSERVSRNLNQ 289
Query: 240 EGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKA---ELPVSLRLIGL 296
L G T+ LKL+ + F T+ L + IS ++DI A LL+ + + +RL+G+
Sbjct: 290 HQLTGDTVVLKLRYSDFRTLTKRKKLAEKISKADDIAHTAHDLLEEIDYDDTLGVRLLGV 349
Query: 297 RVTQFNEDKVR 307
+T F +++R
Sbjct: 350 TLTGFGVEELR 360
>gi|21244347|ref|NP_643929.1| DNA polymerase IV [Xanthomonas axonopodis pv. citri str. 306]
gi|24211643|sp|Q8PGJ4.1|DPO4_XANAC RecName: Full=DNA polymerase IV; Short=Pol IV
gi|21110002|gb|AAM38465.1| DNA polymerase IV [Xanthomonas axonopodis pv. citri str. 306]
Length = 359
Score = 159 bits (401), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 111/302 (36%), Positives = 164/302 (54%), Gaps = 13/302 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FG+R+AMP A +LCP+ IFVP DFT+Y S R++F ++ SLDEAYL
Sbjct: 47 ARIFGIRSAMPAVRAERLCPDAIFVPPDFTRYKAVSRQVREIFHRHTDLVEPLSLDEAYL 106
Query: 68 DITEVCRERGIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP 126
D+T + G+ E+A+ +RT + EE LT SAG+APN+ LAK+ SD KP+GQFV+
Sbjct: 107 DVTHA--KTGMQLATEVAQLIRTQIREETQLTASAGIAPNKFLAKIASDWRKPDGQFVIA 164
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFF 186
R V F+ L + +I G+GKV + L GI T ++ Q+ S
Sbjct: 165 PSR--VDAFLLPLKVNRIPGVGKVMDGKL-AALGIVTVADLRQRPLEELQAHFGSFGQSL 221
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRG 244
G+ + +S+SSE TFS ED AL L + +AE ++ G
Sbjct: 222 YRRARGIDERPVEPDQEVQSVSSEDTFS--EDLALDALAPHILRLAEKTWLATRRTERIG 279
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELPVS--LRLIGLRVTQF 301
RT+ LKLKT++F + TR+ T ++ +S E + + A L + ELP RL+G+ + F
Sbjct: 280 RTVVLKLKTSNFRILTRSYTPEQPPTSQEALAQIALALTRRVELPAQTRYRLVGVGLGGF 339
Query: 302 NE 303
++
Sbjct: 340 SD 341
>gi|298368851|ref|ZP_06980169.1| DNA polymerase IV [Neisseria sp. oral taxon 014 str. F0314]
gi|298282854|gb|EFI24341.1| DNA polymerase IV [Neisseria sp. oral taxon 014 str. F0314]
Length = 352
Score = 159 bits (401), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 104/299 (34%), Positives = 160/299 (53%), Gaps = 11/299 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG+ +AM A++LCP+ ++VP F Y S +F +Y SLDEAYL
Sbjct: 49 ARQFGLHSAMSVATAKRLCPQAVYVPPHFDLYRSISAQIHGIFRRYTTLIEPLSLDEAYL 108
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T+ ++ + ++AE++R + E GLT SAG+APN+ LAK+ SD KPNGQFVLP
Sbjct: 109 DVTDNLQQIPYAS-DVAEKIRAEILAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPP 167
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADF 185
+ A F+ +LP+ KI G+GKVT ++ + G+ T ++ ++G LL +F
Sbjct: 168 QKAA--AFLETLPLGKIPGVGKVTLKKMQSL-GMRTAGDLRRFERGELLN-LFGRYGYRL 223
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
+ + G+ R R IS+E T A L +AE L +Q++ + +
Sbjct: 224 Y-DLARGVDERPVKPDRERLQISTEITLPEDLSLAQAAGHLPHLAEDLWRQIQRKNVEAK 282
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV---SLRLIGLRVTQF 301
++TLKLKT F + TR++T + S +L+ A L P + RLIGL V
Sbjct: 283 SVTLKLKTHDFRIITRSLTYSSVLPDSAALLRAAQTLAGRIPPQREDAFRLIGLGVAHL 341
>gi|375144729|ref|YP_005007170.1| DNA polymerase IV [Niastella koreensis GR20-10]
gi|361058775|gb|AEV97766.1| DNA polymerase IV [Niastella koreensis GR20-10]
Length = 358
Score = 159 bits (401), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 104/298 (34%), Positives = 168/298 (56%), Gaps = 8/298 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFV-PTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAY 66
AR+FGVR+AMP A +LCPEL+FV P F Y S R++F +Y SLDEAY
Sbjct: 50 ARKFGVRSAMPSKRAVQLCPELVFVAPPRFAVYKAVSRQVREIFHRYTDLIEPLSLDEAY 109
Query: 67 LDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP 126
LD+TE ++ G S I IA++++ ++ +E LT SAGV+ N+ +AK+ SD+NKP+G +P
Sbjct: 110 LDVTEDKQQIG-SAIGIAKQIKAAIRDELQLTASAGVSINKFVAKIASDMNKPDGLTFIP 168
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFF 186
D+ V F+ SLP+ K G+GKVT + + + T ++ + + F+
Sbjct: 169 PDK--VEAFMESLPVNKFHGVGKVTAEKM-NTLNLFTGADLKKLTEVELVRLFGKPGSFY 225
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL-LYRKLAEIAEMLSADMQKEGLRGR 245
+ G+ R KSIS+E TF D + + +L +A +++ +Q+ L+G+
Sbjct: 226 YKIVRGIDDRPVEPNRETKSISAEDTFLNDLDNPVEMKEQLDRLAAVVTNRLQQYELKGK 285
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHA-SVLLKAELP-VSLRLIGLRVTQF 301
T+TLK++ + F+ TR+ TL + E I +LLK ++ +RL+G+ V+ F
Sbjct: 286 TITLKIRYSDFKQLTRSQTLPAAVCDQETIAATVLQLLLKTDIQEAKIRLLGVGVSNF 343
>gi|385852932|ref|YP_005899446.1| DNA polymerase IV [Neisseria meningitidis H44/76]
gi|416196178|ref|ZP_11618024.1| DNA polymerase IV [Neisseria meningitidis CU385]
gi|433465393|ref|ZP_20422874.1| impB/mucB/samB family protein [Neisseria meningitidis NM422]
gi|433490777|ref|ZP_20447897.1| impB/mucB/samB family protein [Neisseria meningitidis NM418]
gi|433505380|ref|ZP_20462318.1| impB/mucB/samB family protein [Neisseria meningitidis 9506]
gi|433507449|ref|ZP_20464355.1| impB/mucB/samB family protein [Neisseria meningitidis 9757]
gi|325140607|gb|EGC63127.1| DNA polymerase IV [Neisseria meningitidis CU385]
gi|325199936|gb|ADY95391.1| DNA polymerase IV [Neisseria meningitidis H44/76]
gi|432202592|gb|ELK58651.1| impB/mucB/samB family protein [Neisseria meningitidis NM422]
gi|432226697|gb|ELK82421.1| impB/mucB/samB family protein [Neisseria meningitidis NM418]
gi|432240672|gb|ELK96206.1| impB/mucB/samB family protein [Neisseria meningitidis 9506]
gi|432240723|gb|ELK96256.1| impB/mucB/samB family protein [Neisseria meningitidis 9757]
Length = 352
Score = 159 bits (401), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 103/298 (34%), Positives = 162/298 (54%), Gaps = 15/298 (5%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG+ +AM A++LCP+ ++VP F Y S VF +Y SLDEAYL
Sbjct: 49 ARQFGLHSAMSVATAKRLCPQAVYVPPHFDLYRQVSAQIHAVFRRYTDLIEPLSLDEAYL 108
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T + +G ++A+E+R +++ E GLT SAG+APN+ LAK+ SD KPNGQFVLP
Sbjct: 109 DVTRNFKNIPYAG-DVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPP 167
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADF 185
+ VM F+ +LP+ KI G+GKVT ++ + G+ T ++ ++G LL +H
Sbjct: 168 HK--VMAFLETLPLGKIPGVGKVTLKKMQSL-GMRTAGDLRRFERGELL----NHFGRYG 220
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLR 243
+ L G+ P R+ + ++ ED L L +AE L + ++ +
Sbjct: 221 YRLYDLVRGTDERPVKAERERLQISTEITLPEDLPLEQAAGHLPHLAEDLWRQITRKNVE 280
Query: 244 GRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV---SLRLIGLRV 298
+++TLKLKT F + TR +T + +L+ A +L+ P + RLIG+ V
Sbjct: 281 AQSVTLKLKTYDFRIITRTLTYSSVLPDCAALLQAAQMLMARVSPQTEDAFRLIGIGV 338
>gi|300773786|ref|ZP_07083655.1| DNA-directed DNA polymerase IV [Sphingobacterium spiritivorum ATCC
33861]
gi|300759957|gb|EFK56784.1| DNA-directed DNA polymerase IV [Sphingobacterium spiritivorum ATCC
33861]
Length = 359
Score = 158 bits (400), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 117/321 (36%), Positives = 176/321 (54%), Gaps = 20/321 (6%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++GV++AM A +LCP+LIF F Y S R++F +Y SLDEAYL
Sbjct: 51 ARKYGVKSAMSSRQALQLCPQLIFTRPRFDVYKEVSQQIRQIFLRYTDLIEPLSLDEAYL 110
Query: 68 DITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVL 125
D+TE ++GI S I+IA +++ + EE LT SAGV+ N+ +AK+ SDINKP+G F+
Sbjct: 111 DVTE--DKQGIGSAIDIARQIKQEIREELNLTVSAGVSVNKFVAKIASDINKPDGLTFIG 168
Query: 126 PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADF 185
P+ V+ F+ LPI K G+GKVT ++ + GI+ +M Q T F
Sbjct: 169 PSK---VVAFMEHLPIEKFFGVGKVTASKMKKL-GIHRGADMKQWTQEALTRHFGKTGKF 224
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRG 244
F ++ G+ + R KSIS E TF+ D +L L E++ L+ + + L G
Sbjct: 225 FYNIVRGVDNRPVQPNRQTKSISVEDTFAQDIADLQVLEDILKELSGRLAKRLNAKQLAG 284
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK----AELPVSLRLIGLRVTQ 300
+T+TLK+K + F TR++T + ++ E + + AS LL AE+ V RL+G+ V+
Sbjct: 285 KTVTLKVKFSDFSQATRSMTSLEVVTGEEVLYQIASELLNKVSLAEMKV--RLLGVGVSN 342
Query: 301 F-NEDKVRAPSDPTQKTLTNF 320
F ED P + LT F
Sbjct: 343 FTGED----PDQQINRQLTLF 359
>gi|288929132|ref|ZP_06422977.1| DNA polymerase IV [Prevotella sp. oral taxon 317 str. F0108]
gi|288329234|gb|EFC67820.1| DNA polymerase IV [Prevotella sp. oral taxon 317 str. F0108]
Length = 367
Score = 158 bits (400), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 112/311 (36%), Positives = 160/311 (51%), Gaps = 23/311 (7%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++GV +AM G A++LCPELIF+P DF KY S ++F +Y SLDEAYL
Sbjct: 53 ARKYGVHSAMSGVQAKRLCPELIFLPPDFKKYKQVSQQVHEIFHRYTDLVEPLSLDEAYL 112
Query: 68 DITEVCRERGIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP 126
D+T+ + GI ++IA+ +R + E LT SAGV+ N+ LAKV SD KP+G V+
Sbjct: 113 DVTQ--NKLGIELAVDIAQRIRQEIRNELHLTASAGVSFNKFLAKVASDFRKPDGITVIH 170
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFF 186
R M FI +LPI G+G T + + N + L VF + +
Sbjct: 171 PSR--AMHFIDNLPITDFWGVGHKTAETMHAMGIFNGADLRQLSRLRLRQVFG-KAGEMY 227
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFSVTEDKA-------LLYRKLAEIAEMLSADMQK 239
+ + RKS+ ERTF ED + LYR + E+ E L +K
Sbjct: 228 YNFARAIDPRPVEPHWIRKSVGCERTFD--EDSSNPTVLLTELYRLVLELVERL----KK 281
Query: 240 EGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS---LRLIGL 296
+GRTLTLK+K F TR+ T + EDIL A LL +E+ S +RL+G+
Sbjct: 282 NDFKGRTLTLKVKFHDFTQITRSRTAPHVLRKKEDILPIAKALL-SEVNYSGRPIRLLGV 340
Query: 297 RVTQFNEDKVR 307
+V+ N++ R
Sbjct: 341 QVSNMNDEPHR 351
>gi|261377452|ref|ZP_05982025.1| DNA-directed DNA polymerase [Neisseria cinerea ATCC 14685]
gi|269146178|gb|EEZ72596.1| DNA-directed DNA polymerase [Neisseria cinerea ATCC 14685]
Length = 352
Score = 158 bits (400), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 104/299 (34%), Positives = 163/299 (54%), Gaps = 17/299 (5%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG+ +AM A++LCP+ ++VP F Y S VF +Y SLDEAYL
Sbjct: 49 ARQFGLHSAMSVATAKRLCPQAVYVPPHFDLYRQVSAQIHTVFRRYTDLIEPLSLDEAYL 108
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T + + E+A+E+R +++ E GLT SAG+APN+ LAK+ SD KPNGQFVLP
Sbjct: 109 DVTRNFKNIPYAS-EVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPP 167
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADF 185
+ VM F+ +LP+ KI G+GKVT ++ + G+ T ++ ++G LL +H
Sbjct: 168 HK--VMAFLETLPLGKIPGVGKVTLKKMQSL-GMQTAGDLRRFERGELL----NHFGRYG 220
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLR 243
+ L G+ P R+ + ++ ED L L +AE L + ++ +
Sbjct: 221 YRLYDLARGTDERPVKAERERLQISTEITLPEDLPLEQAAGHLPHLAEDLWRQITRKNVE 280
Query: 244 GRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV----SLRLIGLRV 298
+++TLKLKT F + TR +T + +L+ A +L+ A +P + RLIG+ V
Sbjct: 281 AQSVTLKLKTYDFRIITRTLTYSSVLPDCTALLQAAQMLM-ARVPPQTEDAFRLIGIGV 338
>gi|398825840|ref|ZP_10584115.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bradyrhizobium sp. YR681]
gi|398222485|gb|EJN08859.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bradyrhizobium sp. YR681]
Length = 366
Score = 158 bits (400), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 105/304 (34%), Positives = 167/304 (54%), Gaps = 17/304 (5%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR+AMP A++ CP+LIFV F Y S R++F ++ P SLDEAYL
Sbjct: 60 ARKFGVRSAMPSVTAKRQCPDLIFVRPRFEVYKAISRQIREIFAEHTPVIEPLSLDEAYL 119
Query: 68 DITEVCRERGISGIEIAEE----LRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF 123
D+TE + GI +A + +R + E GL SAG++ N+ LAK+ SD KPNGQ+
Sbjct: 120 DVTE-----NLQGIPLARDVALRIRDKIKAETGLNASAGISYNKFLAKLASDHRKPNGQY 174
Query: 124 VLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEML-QKGSLLCAVFSHST 182
V+ + F+ +LP+ K GIG T + + G+ T ++ Q + A F S
Sbjct: 175 VISPEMGP--AFVETLPVGKFHGIGPATAAKM-NALGLFTGLDIRNQTLEFMNANFGKSG 231
Query: 183 ADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDK-ALLYRKLAEIAEMLSADMQKEG 241
A ++ + G+ R RKSI +E TFS D L +L + + + + G
Sbjct: 232 A-YYYWISRGVDERPVRANRIRKSIGAETTFSTDLDTFDALAAELRPLVDKVWRHCETSG 290
Query: 242 LRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVT 299
RGRT+TLK+K A FE+ TR+ ++ ++ +++ + A LL+ E+P+ S+RL+G+ ++
Sbjct: 291 NRGRTVTLKVKFADFEIVTRSRSVPAPVAGRDELERLACGLLEVEMPLPKSVRLLGVSLS 350
Query: 300 QFNE 303
+
Sbjct: 351 SLQD 354
>gi|78358660|ref|YP_390109.1| DNA-directed DNA polymerase [Desulfovibrio alaskensis G20]
gi|78221065|gb|ABB40414.1| DNA-directed DNA polymerase [Desulfovibrio alaskensis G20]
Length = 385
Score = 158 bits (400), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 111/299 (37%), Positives = 161/299 (53%), Gaps = 8/299 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARR+G+R+AMP AR+LCP +FV +Y S +V ++ P AS+DEAYL
Sbjct: 42 ARRYGIRSAMPSGQARRLCPHAVFVKGRMHRYKEISAQVMQVLHEFSPLVEQASVDEAYL 101
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D T R G E+A +R +V E LTCS GVAP + LAK+ SD+NKP+G FVL
Sbjct: 102 DATGSARLFGPPE-EMARRIRAAVREAVSLTCSVGVAPVKFLAKIASDVNKPDGLFVLQP 160
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHSTADFF 186
D +A F++ LP+ I G+G+ L+ G+ T ++L+ + F F
Sbjct: 161 DEVA--GFLAVLPVGDIPGVGRHFAGQLQ-ALGVRTAGDVLRYPETFWQRRFGKGGLGLF 217
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
+ G+ KS S+E TF T+D+ LL L + AE + + ++ GL GR
Sbjct: 218 -ARAQGIDPRVVEPYTQAKSESAENTFEEDTDDRELLKTWLLKQAERVGRNQRRMGLSGR 276
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELPVSLRLIGLRVTQFNE 303
T+TLK+K A F TR+ TL SS+ I A+ LL + LP +RLIG+ ++ + E
Sbjct: 277 TVTLKVKFADFRTVTRSRTLAAPTSSTRVIYDTAAALLDEMGLPQKVRLIGVGLSHYAE 335
>gi|311105525|ref|YP_003978378.1| impB/mucB/samB family protein [Achromobacter xylosoxidans A8]
gi|310760214|gb|ADP15663.1| impB/mucB/samB family protein [Achromobacter xylosoxidans A8]
Length = 359
Score = 158 bits (400), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 107/313 (34%), Positives = 165/313 (52%), Gaps = 17/313 (5%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFG+ +AM A +LCP I+VP DF +Y S R++F ++ SLDEAYL
Sbjct: 50 ARRFGIHSAMSAARAERLCPHAIYVPPDFNRYRDVSRQVRQIFARHTDLIEPLSLDEAYL 109
Query: 68 DITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP 126
D+T + G+ S E+A+ +R + EE GLT SAGVAPN+ LAK+ SD NKP+G FV+
Sbjct: 110 DVT--INKLGLPSATEVAQVIRHQIREETGLTASAGVAPNKFLAKIASDWNKPDGLFVVR 167
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFF 186
+ V+ F+ LP+RK+ G+GKVT+ L + GI+T ++ + +
Sbjct: 168 PAK--VLAFLEPLPVRKVPGVGKVTQARL-EQLGIHTVGDLATHSAQELEHYFGRYGRRL 224
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRT 246
+ G+ + + +SSE TFS + + +AE + K+G GRT
Sbjct: 225 YELARGIDEREVQTDQPLQQVSSETTFSQDIRLDAVGEAIDRMAERVWDQALKKGALGRT 284
Query: 247 LTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELPVS--LRLIGLRVTQFNE 303
+ LKLKT F + TR+ T S+ ++ A +L + +LP RL G+ ++ F
Sbjct: 285 VVLKLKTDRFRILTRSQTSPGPPGSAAELAAVARLLCERVDLPPETLYRLAGVGMSNF-- 342
Query: 304 DKVRAPSDPTQKT 316
+DP ++T
Sbjct: 343 ------ADPQEQT 349
>gi|427827542|ref|ZP_18994574.1| impB/mucB/samB family protein [Neisseria meningitidis H44/76]
gi|316984579|gb|EFV63544.1| impB/mucB/samB family protein [Neisseria meningitidis H44/76]
Length = 342
Score = 158 bits (400), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 103/298 (34%), Positives = 162/298 (54%), Gaps = 15/298 (5%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG+ +AM A++LCP+ ++VP F Y S VF +Y SLDEAYL
Sbjct: 39 ARQFGLHSAMSVATAKRLCPQAVYVPPHFDLYRQVSAQIHAVFRRYTDLIEPLSLDEAYL 98
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T + +G ++A+E+R +++ E GLT SAG+APN+ LAK+ SD KPNGQFVLP
Sbjct: 99 DVTRNFKNIPYAG-DVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPP 157
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADF 185
+ VM F+ +LP+ KI G+GKVT ++ + G+ T ++ ++G LL +H
Sbjct: 158 HK--VMAFLETLPLGKIPGVGKVTLKKMQSL-GMRTAGDLRRFERGELL----NHFGRYG 210
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLR 243
+ L G+ P R+ + ++ ED L L +AE L + ++ +
Sbjct: 211 YRLYDLVRGTDERPVKAERERLQISTEITLPEDLPLEQAAGHLPHLAEDLWRQITRKNVE 270
Query: 244 GRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV---SLRLIGLRV 298
+++TLKLKT F + TR +T + +L+ A +L+ P + RLIG+ V
Sbjct: 271 AQSVTLKLKTYDFRIITRTLTYSSVLPDCAALLQAAQMLMARVSPQTEDAFRLIGIGV 328
>gi|433677041|ref|ZP_20509074.1| DNA polymerase IV [Xanthomonas translucens pv. translucens DSM
18974]
gi|430817838|emb|CCP39428.1| DNA polymerase IV [Xanthomonas translucens pv. translucens DSM
18974]
Length = 353
Score = 158 bits (399), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 118/315 (37%), Positives = 171/315 (54%), Gaps = 39/315 (12%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FG+R+AMP A +LCP+ IFVP DF +Y S R++F ++ SLDEAYL
Sbjct: 47 ARVFGIRSAMPALRAERLCPDAIFVPPDFARYKAVSRQVREIFQRHTDLIEPLSLDEAYL 106
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-P 126
D+T E + EIA+ +R + EE LT SAG+APN+ LAK+ SD KP+GQFV+ P
Sbjct: 107 DVTAPKGELA-TATEIAQTIRAQIREETALTASAGIAPNKFLAKIASDWRKPDGQFVIRP 165
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADF- 185
+ V F++ LP+ K+ G+GKV + L ++ GI T ++ +H A+
Sbjct: 166 HQ---VDAFLTPLPVSKVPGVGKVMQAKLAEL-GIVTVGDLR----------THGEAELE 211
Query: 186 --FLSVGL-------GLGSTNTPQARFRKSISSERTFSVTEDKAL-----LYRKLAEIAE 231
F S GL G+ + +SISSE TF+ ED AL R LAE +
Sbjct: 212 ARFGSFGLRLYQRARGIDQRPVEADQQVQSISSEDTFA--EDLALDALEPAIRLLAE--K 267
Query: 232 MLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL-LKAELPVS 290
+A + E + RT+ LKLKTA F + TR+ T ++ S + + A L + +LP S
Sbjct: 268 TWTATRRTERI-ARTVVLKLKTAQFRILTRSFTPEQPPDSLQALTDIALALRQRVDLPAS 326
Query: 291 --LRLIGLRVTQFNE 303
RL+G+ + F+E
Sbjct: 327 TRYRLVGVGLAGFHE 341
>gi|22095624|sp|Q92XH8.2|DPO42_RHIME RecName: Full=DNA polymerase IV 2; Short=Pol IV 2
Length = 354
Score = 158 bits (399), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 102/298 (34%), Positives = 156/298 (52%), Gaps = 7/298 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGV +AMP A++ CPELIFVP F Y S + +F +Y P SLDEAYL
Sbjct: 47 ARKFGVHSAMPSVTAKRKCPELIFVPHRFDVYRAVSRQIQAIFAEYTPLVEPLSLDEAYL 106
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+TE R ++ EIAEE+R + E LT SAGV+ N+ LAK+ SD KP+G FV+
Sbjct: 107 DVTENFRGLKLA-TEIAEEIRGRIRAETHLTASAGVSYNKFLAKMASDQRKPDGLFVITP 165
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
F+ +LP++K G+G T ++ + GI T ++ + + +F
Sbjct: 166 KHGP--DFVQALPVKKFHGVGPATAEKMKRL-GIETGADLKSRDLAFLQQHFGKSGPYFY 222
Query: 188 SVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRT 246
+ G+ R RKSI +E TF D L + + + + G+RG+T
Sbjct: 223 WIARGIDERKVKPDRIRKSIGAEDTFREDVHDLETARAGLKPLIDKVWHYCEASGIRGKT 282
Query: 247 LTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFN 302
+TLK+K A F TR+ T+ I+S ++ + A +LL P +RL+G+ ++ +
Sbjct: 283 MTLKVKWADFTQITRSKTIVAPIASVAEMSEIAELLLSPIFPAPKGIRLLGVTLSSLD 340
>gi|182418367|ref|ZP_02949662.1| DNA polymerase IV [Clostridium butyricum 5521]
gi|237666322|ref|ZP_04526307.1| DNA polymerase IV [Clostridium butyricum E4 str. BoNT E BL5262]
gi|182377749|gb|EDT75293.1| DNA polymerase IV [Clostridium butyricum 5521]
gi|237657521|gb|EEP55076.1| DNA polymerase IV [Clostridium butyricum E4 str. BoNT E BL5262]
Length = 348
Score = 158 bits (399), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 109/307 (35%), Positives = 165/307 (53%), Gaps = 20/307 (6%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++GV +AMP F+A++ CP IFV + +YT S K+ P S+DE YL
Sbjct: 48 ARKYGVHSAMPIFMAKEKCPNGIFVAGRYGRYTKISQEIFKILSDVTPIIEQVSIDEGYL 107
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+++ R +GI+ A ++ V++E GLT S G++ N+ LAK+ SD NKPNG +
Sbjct: 108 DLSQ---SRFENGIDAARYIKNKVFKEIGLTISVGISYNKFLAKLASDWNKPNG--IKEI 162
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRD--VFGINTCEEMLQKGSLLCAVFSHSTADF 185
R + + LP+ KI G+GK++ L + +F I M +K + D
Sbjct: 163 SRSMIPDILLPLPLSKIHGLGKISVGKLNNMGIFYIKDLYNMEKK--FYIEYLGKNGLDI 220
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLA----EIAEMLSADMQKE 240
+ + G+ + R RKS+ ERT T++K L + L EI EML A +
Sbjct: 221 YDRI-RGIDNRKIETIRERKSVGKERTLKFDTDNKEELLQYLKEFSFEIEEMLCA----K 275
Query: 241 GLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKA-ELPVSLRLIGLRVT 299
+ G+T+TLK KT FE TR+ TL YIS EDI + LL++ EL +LRLIG+ ++
Sbjct: 276 NVVGKTVTLKFKTKDFENHTRSRTLNNYISYHEDIFNVSKELLESEELKSNLRLIGVSIS 335
Query: 300 QFNEDKV 306
F E ++
Sbjct: 336 SFKEKEI 342
>gi|334140370|ref|YP_004533572.1| DNA polymerase IV [Novosphingobium sp. PP1Y]
gi|333938396|emb|CCA91754.1| DNA polymerase IV [Novosphingobium sp. PP1Y]
Length = 374
Score = 158 bits (399), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 111/308 (36%), Positives = 161/308 (52%), Gaps = 15/308 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR+AMP A + CP LIF F Y S R +F +Y P+ SLDEAYL
Sbjct: 64 ARKFGVRSAMPSTRAARQCPGLIFRKPRFEVYRAVSQQIRAIFHEYTPHVEPLSLDEAYL 123
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-P 126
D+T + G S IAEE+R + E GLT SAGV+ N+ LAK+ SD NKP+G V+ P
Sbjct: 124 DVTADLKGLG-SATRIAEEIRRRIKSETGLTASAGVSYNKFLAKLASDQNKPDGLCVIRP 182
Query: 127 NDRMAVMTFISSLPIRKIGGIG-KVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADF 185
+ A F++ LP+R+ G+G + E + R GI T ++ K S A++
Sbjct: 183 GEGAA---FVAMLPVRRFHGVGPRGAEKMAR--LGIETGADLRGKDIHFLRQHFGSFAEY 237
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKA---LLYRKLAEIAEMLSADMQKEGL 242
G+ R RKS+ ERTF ED A L + I +++ +++
Sbjct: 238 LYRAARGVDLRQVRANRPRKSVGGERTF--FEDIARADALRETMDSIIDIVWDRIERAET 295
Query: 243 RGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRVTQ 300
RGRT+TLKL+ A F TRA +L +++ E+ + LL LP +RL+GL ++
Sbjct: 296 RGRTITLKLRYADFRTITRARSLSHFVTGKEEFGQIGHALLDDLMPLPQPIRLMGLTLSA 355
Query: 301 FNEDKVRA 308
++ A
Sbjct: 356 LEREEAVA 363
>gi|168179226|ref|ZP_02613890.1| DNA polymerase IV [Clostridium botulinum NCTC 2916]
gi|182669759|gb|EDT81735.1| DNA polymerase IV [Clostridium botulinum NCTC 2916]
Length = 349
Score = 158 bits (399), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 103/303 (33%), Positives = 163/303 (53%), Gaps = 11/303 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++GV +AMP FIA+K CP I+VP +Y S+ K+ K P S+DEAYL
Sbjct: 48 ARKYGVHSAMPVFIAKKRCPFGIYVPGRHERYKEVSNNIFKILYKVTPIIEPVSIDEAYL 107
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
DIT + E I++AE ++ V E GLT S G++ N+ LAK+ SD NKP+G ++
Sbjct: 108 DITNIKEE----PIKVAEHIKKRVKNEMGLTLSVGISYNKFLAKLASDWNKPDGIKIIRQ 163
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCA-VFSHSTADFF 186
D + + + LPI KI GIGK + L ++ GI T E+M + C F + +
Sbjct: 164 D--MIPSILMPLPINKIHGIGKKSVEKLNNI-GIYTVEDMHKLSRDFCIEYFGKFGVEIY 220
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
+ G+ +R RKSI E T +K + + L + + +S ++ K G+
Sbjct: 221 ERI-RGIDYREVKVSRERKSIGKEITLKKDITNKEEMKKYLLDFSNKVSTNLYKRNSGGK 279
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHA-SVLLKAELPVSLRLIGLRVTQFNED 304
T+T+K+KT++F+ TR+ T+ YI ++I A +L +RLIGL V+ ++
Sbjct: 280 TVTVKIKTSNFQTHTRSKTVNDYIRDKDEIYNIACDILEHINFKEPIRLIGLTVSNLGKN 339
Query: 305 KVR 307
K++
Sbjct: 340 KIK 342
>gi|421538412|ref|ZP_15984588.1| DNA polymerase IV [Neisseria meningitidis 93003]
gi|402316439|gb|EJU51984.1| DNA polymerase IV [Neisseria meningitidis 93003]
Length = 352
Score = 158 bits (399), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 104/299 (34%), Positives = 162/299 (54%), Gaps = 17/299 (5%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG+ +AM A++LCP+ ++VP F Y S VF +Y SLDEAYL
Sbjct: 49 ARQFGLHSAMSVATAKRLCPQAVYVPPHFDLYRQVSAQIHAVFRRYTDLIEPLSLDEAYL 108
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T + + E+A+E+R +++ E GLT SAG+APN+ LAK+ SD KPNGQFVLP
Sbjct: 109 DVTRNFKNIPYAS-EVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPP 167
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADF 185
+ VM F+ +LP+ KI G+GKVT ++ + G+ T ++ +G LL +H
Sbjct: 168 HK--VMAFLETLPLGKIPGVGKVTLKKMQSL-GMQTAGDLRRFDRGELL----NHFGRYG 220
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLR 243
+ L G+ P R+ + ++ ED L L +AE L + ++ +
Sbjct: 221 YRLYDLARGTDERPVKAERERLQISTEITLPEDLPLEQAAGHLPHLAEDLWRQITRKNVE 280
Query: 244 GRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV----SLRLIGLRV 298
+++TLKLKT F + TR +T + +L+ A +L+ A +P + RLIG+ V
Sbjct: 281 AQSVTLKLKTYDFRIITRTLTYSSVLPDCAALLQAAQMLI-ARVPPQTEDAFRLIGIGV 338
>gi|13488542|ref|NP_109549.1| DNA polymerase IV [Mesorhizobium loti MAFF303099]
gi|22095629|sp|Q98NW7.1|DPO43_RHILO RecName: Full=DNA polymerase IV 3; Short=Pol IV 3
gi|14028296|dbj|BAB54888.1| DNA-damage-inducible protein P [Mesorhizobium loti MAFF303099]
Length = 361
Score = 158 bits (399), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 114/303 (37%), Positives = 164/303 (54%), Gaps = 16/303 (5%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FGVR+AMP A++ CPELIFVP F Y S R VF ++ SLDEAYL
Sbjct: 55 ARAFGVRSAMPSVTAKRKCPELIFVPPRFDVYRAVSAQIRDVFAEHTDLIEPLSLDEAYL 114
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-P 126
D+T+ R S IAE +R + E GLT SAG++ N+ LAK+ SD NKPNGQFV+ P
Sbjct: 115 DVTQ-NRLNISSATTIAEMIRAKILEVTGLTASAGISYNKFLAKMASDQNKPNGQFVITP 173
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADF 185
A F+ +LP+ K G+G T + + GI T ++ ++ S L F S +
Sbjct: 174 RHGPA---FVETLPVNKFHGVGPATAAKM-EALGIETGADLKERSLSFLQQHFGKSGL-W 228
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADM---QKEGL 242
+ + + R RKSI +E TF+ D L LAE+ +++ + +G+
Sbjct: 229 YYQIARAIDERAVDPDRPRKSIGAEDTFAA--DIVDLETSLAELKPLVAKVWGYCEGKGI 286
Query: 243 RGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQ 300
RGRT+TLK+K A F+ TR+ T+ I S D A+ LL + PV +RL+G+ ++
Sbjct: 287 RGRTVTLKIKFADFQQITRSRTVAVPIELS-DFEHLAADLLGSVFPVRKGIRLLGVTLSS 345
Query: 301 FNE 303
+
Sbjct: 346 LGD 348
>gi|78049296|ref|YP_365471.1| DNA polymerase IV [Xanthomonas campestris pv. vesicatoria str.
85-10]
gi|325924733|ref|ZP_08186170.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Xanthomonas perforans 91-118]
gi|346726392|ref|YP_004853061.1| DNA polymerase IV [Xanthomonas axonopodis pv. citrumelo F1]
gi|123584151|sp|Q3BP42.1|DPO4_XANC5 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|78037726|emb|CAJ25471.1| DNA polymerase IV [Xanthomonas campestris pv. vesicatoria str.
85-10]
gi|325544825|gb|EGD16171.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Xanthomonas perforans 91-118]
gi|346651139|gb|AEO43763.1| DNA polymerase IV [Xanthomonas axonopodis pv. citrumelo F1]
Length = 359
Score = 158 bits (399), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 110/302 (36%), Positives = 164/302 (54%), Gaps = 13/302 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FG+R+AMP A +LCP+ IFVP DF +Y S R++F ++ SLDEAYL
Sbjct: 47 ARTFGIRSAMPAVRAERLCPDAIFVPPDFARYKAVSRQVREIFHRHTDLVEPLSLDEAYL 106
Query: 68 DITEVCRERGIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP 126
D+T + G+ E+A+ +RT + EE LT SAG+APN+ LAK+ SD KP+GQFV+
Sbjct: 107 DVTHA--KTGMQLATEVAQLIRTQIREETQLTASAGIAPNKFLAKIASDWRKPDGQFVIA 164
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFF 186
R V F+ L + +I G+GKV + L GI T ++ Q+ S
Sbjct: 165 PSR--VDAFLLPLKVNRIPGVGKVMDGKL-AALGIVTVADLRQRPLEELQAHFGSFGQSL 221
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRG 244
G+ + +S+SSE TFS ED AL L + +AE ++ G
Sbjct: 222 YRRARGIDERPVEPDQEVQSVSSEDTFS--EDLALDALDPHILRLAEKTWLATRRTERIG 279
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELPVS--LRLIGLRVTQF 301
RT+ LKLKT++F + TR+ T ++ +S E + + A L + ELP RL+G+ ++ F
Sbjct: 280 RTVVLKLKTSNFRILTRSYTPEQPPTSQEALAQIALALTRRVELPTQTRYRLVGVGLSGF 339
Query: 302 NE 303
++
Sbjct: 340 SD 341
>gi|169632191|ref|YP_001705927.1| DNA polymerase IV [Acinetobacter baumannii SDF]
gi|169150983|emb|CAO99608.1| DNA polymerase IV, devoid of proofreading, damage-inducible protein
P [Acinetobacter baumannii]
Length = 363
Score = 158 bits (399), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 104/294 (35%), Positives = 161/294 (54%), Gaps = 11/294 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FG+R+AM ARKLCP+++ + +F KY S +F +Y SLDEAYL
Sbjct: 47 AREFGLRSAMSMSQARKLCPQVVIIEPNFEKYRAISAQIHSIFQQYTTLIEPLSLDEAYL 106
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+TE ++ S E+A +R ++ + GLT SAGVAPN+ LAKV SD NKPNG FV+
Sbjct: 107 DVTENLKQIA-SATEVAMHIREDIFRQTGLTASAGVAPNKFLAKVASDWNKPNGLFVIKP 165
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQK--GSLLCAVFSHSTADF 185
++A +FI LP++KI G+GKVT+ L+ + ++T + LQK ++L F
Sbjct: 166 SQVA--SFIQDLPLKKIPGVGKVTQEKLQQL-ELHTLGD-LQKIEEAVLVHHFGKYGQQL 221
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
+L G+ + R R+ IS E TF A +AE + ++K+ L R
Sbjct: 222 YL-YAQGIDNRPVQAERARQQISKETTFDSDFTLAQCQSYWHGLAEKVWQSLEKKQLNAR 280
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELP--VSLRLIGL 296
+ +KLK +F+ + + + I S +D+++ +LL + +P RLIG+
Sbjct: 281 GVNIKLKLKNFQTLQHSKSFKNPIHSQQDLIQVLFLLLNEMHIPENFQFRLIGV 334
>gi|383775145|ref|YP_005454214.1| DNA polymerase IV [Bradyrhizobium sp. S23321]
gi|381363272|dbj|BAL80102.1| DNA polymerase IV [Bradyrhizobium sp. S23321]
Length = 366
Score = 158 bits (399), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 108/304 (35%), Positives = 165/304 (54%), Gaps = 19/304 (6%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FGVR+AMP AR+ CP+LIFV F Y S R +F ++ P SLDEAYL
Sbjct: 60 ARAFGVRSAMPSVTARRQCPDLIFVKPRFEVYKAISRQIRDIFAEHTPVIEPLSLDEAYL 119
Query: 68 DITEVCRERGISGIEIAEE----LRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF 123
D+TE + GI +A + +R ++ E GL SAG++ N+ LAK+ SD KPNGQF
Sbjct: 120 DVTE-----NLQGIPLARDVALRIRETIKAETGLNASAGISYNKFLAKLASDHRKPNGQF 174
Query: 124 VLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEML-QKGSLLCAVFSHST 182
V+ + F+ +LP+ K GIG T + + G+ T ++ Q + A F S
Sbjct: 175 VISPEMGP--AFVETLPVGKFHGIGPATSAKM-NALGLFTGLDIRNQSLEFMNANFGKSG 231
Query: 183 ADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTED--KALLYRKLAEIAEMLSADMQKE 240
A ++ + G+ R RKSI +E TF D AL+ +L + + + +
Sbjct: 232 A-YYYWISRGVDERPVRANRVRKSIGAETTFQADLDVFDALII-ELRPLVDKVWRHCEAT 289
Query: 241 GLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS--LRLIGLRV 298
G RGRT+TLK+K A FE+ TR+ +L +S +++ + A LL+ E+P+ +RL+G+ +
Sbjct: 290 GNRGRTVTLKIKFADFEIITRSRSLPAPVSGRDELERLACGLLEVEMPLPKRVRLLGVSL 349
Query: 299 TQFN 302
+
Sbjct: 350 SALQ 353
>gi|261334856|emb|CBH17850.1| DNA polymerase kappa, putative [Trypanosoma brucei gambiense
DAL972]
Length = 571
Score = 158 bits (399), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 98/291 (33%), Positives = 155/291 (53%), Gaps = 16/291 (5%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR G+R MPGF+A K+CP L+ +P DF Y S+ R++ +YDPN++ LDE L
Sbjct: 175 ARGRGIRQGMPGFLALKICPNLLILPPDFDAYNEESNTVRRIVAEYDPNYIVVGLDELTL 234
Query: 68 DITE-VCRERGISGIE-IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL 125
+++ + R G E +A ELR V+ E LT SAG+ P LAK+ S+INKPNGQ L
Sbjct: 235 EVSAYIERFEGTKTAEDVASELRVRVFGETKLTASAGIGPTAALAKIASNINKPNGQHDL 294
Query: 126 P-NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTAD 184
+ R VMT++ L +R + G+GKVTE +L+ GI T ++ + LC + ++
Sbjct: 295 NLHTREDVMTYVRDLGLRSVPGVGKVTEALLKG-LGITTLGDIHDRRVELCYILHNNLFR 353
Query: 185 FFLSVGLGL-------GSTNTPQARF-----RKSISSERTFSVTEDKALLYRKLAEIAEM 232
F L +G+ + NT RK+ISSER+F V K L+ + I E
Sbjct: 354 FLLGASIGIMQWPDAATAANTENCEGATGGQRKAISSERSFYVLHSKEQLHEMIYSIFEE 413
Query: 233 LSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL 283
+M++ + R ++L ++ +S+ + +L ++ S + + LL
Sbjct: 414 AYEEMRQNEMLCRQISLLVRWSSYRYQQYTKSLIQHSDDSATLRRAVDGLL 464
>gi|59801155|ref|YP_207867.1| DNA polymerase IV [Neisseria gonorrhoeae FA 1090]
gi|240014082|ref|ZP_04720995.1| putative DNA-damage-inducibile protein [Neisseria gonorrhoeae
DGI18]
gi|240016516|ref|ZP_04723056.1| putative DNA-damage-inducibile protein [Neisseria gonorrhoeae
FA6140]
gi|240121643|ref|ZP_04734605.1| putative DNA-damage-inducibile protein [Neisseria gonorrhoeae
PID24-1]
gi|268599074|ref|ZP_06133241.1| impB/mucB/samB family protein [Neisseria gonorrhoeae MS11]
gi|268684378|ref|ZP_06151240.1| impB/mucB/samB family protein [Neisseria gonorrhoeae SK-92-679]
gi|268686699|ref|ZP_06153561.1| impB/mucB/samB family protein [Neisseria gonorrhoeae SK-93-1035]
gi|293399022|ref|ZP_06643187.1| DNA polymerase IV [Neisseria gonorrhoeae F62]
gi|75432500|sp|Q5F8N2.1|DPO4_NEIG1 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|59718050|gb|AAW89455.1| putative DNA-damage-inducibile protein [Neisseria gonorrhoeae FA
1090]
gi|268583205|gb|EEZ47881.1| impB/mucB/samB family protein [Neisseria gonorrhoeae MS11]
gi|268624662|gb|EEZ57062.1| impB/mucB/samB family protein [Neisseria gonorrhoeae SK-92-679]
gi|268626983|gb|EEZ59383.1| impB/mucB/samB family protein [Neisseria gonorrhoeae SK-93-1035]
gi|291610436|gb|EFF39546.1| DNA polymerase IV [Neisseria gonorrhoeae F62]
Length = 352
Score = 158 bits (399), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 104/299 (34%), Positives = 162/299 (54%), Gaps = 17/299 (5%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG+ +AM ++LCP+ ++VP F Y S VF +Y SLDEAYL
Sbjct: 49 ARQFGLHSAMSVATVKRLCPQAVYVPPHFDLYRQVSAQIHAVFRRYTDLIEPLSLDEAYL 108
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T + +G E+A+E+R +++ E GLT SAG+APN+ LAK+ SD KPNGQFVLP
Sbjct: 109 DVTRNFKNIPYAG-EVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPP 167
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADF 185
+ VM F+ +LP+ KI G GKVT ++ + G+ T ++ ++G LL +H
Sbjct: 168 HK--VMAFLETLPLGKIPGAGKVTLKKMQSL-GMRTAGDLRRFERGELL----NHFGRYG 220
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLR 243
+ L G+ P R+ + ++ ED L L +AE L + ++ +
Sbjct: 221 YRLYDLARGTDEHPVKAERERLQISTEITLPEDLPLGQAAGHLPHLAEDLWRQITRKNVE 280
Query: 244 GRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV----SLRLIGLRV 298
+++TLKLKT F + TR +T + +L+ A +L+ A +P + RLIG+ V
Sbjct: 281 AQSVTLKLKTYDFRIITRTLTYSSVLPDCAALLQAAQMLM-ARVPPQTEDAFRLIGIGV 338
>gi|242277745|ref|YP_002989874.1| DNA-directed DNA polymerase [Desulfovibrio salexigens DSM 2638]
gi|242120639|gb|ACS78335.1| DNA-directed DNA polymerase [Desulfovibrio salexigens DSM 2638]
Length = 389
Score = 158 bits (399), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 106/298 (35%), Positives = 157/298 (52%), Gaps = 6/298 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR+AMP A KLCP+L V +Y S Y P AS+DEAY+
Sbjct: 48 ARKFGVRSAMPVRQALKLCPQLQVVSGSRHRYKEISRKVMAALSNYSPIVEQASIDEAYI 107
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
DIT + G + ++IA ++ + + GLT S G+AP + LAK+ SD+NKP+G ++
Sbjct: 108 DITGTEKLFG-TPLQIARSIKADIRKATGLTASVGIAPVKFLAKIASDLNKPDGISIITA 166
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
++ V F+ +LP+ KI G+GK LR +GI ++ +
Sbjct: 167 EQ--VQDFLKTLPVEKIPGVGKKALPRLRS-YGITYAADLRRYPPEFWKERFGERGLVLY 223
Query: 188 SVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRT 246
G G+ T + KS S+E TF D L L + +E ++AD++K G++GRT
Sbjct: 224 EKGAGIDPTPVTEGGAMKSSSAENTFGEDVSDIHTLKTLLLKQSERIAADIRKHGVKGRT 283
Query: 247 LTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS-LRLIGLRVTQFNE 303
+TLK+K F TR+ TL S + I K A LL AELP+ +RLIG+ ++ F E
Sbjct: 284 VTLKVKFPDFRQITRSRTLDSRTSHAGTIYKTACSLLDAELPIGPIRLIGVGISNFEE 341
>gi|193782767|ref|NP_436520.4| DNA polymerase IV [Sinorhizobium meliloti 1021]
gi|193073223|gb|AAK65932.2| Nucleotidyltransferase/DNA polymerase [Sinorhizobium meliloti 1021]
Length = 369
Score = 157 bits (398), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 102/298 (34%), Positives = 156/298 (52%), Gaps = 7/298 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGV +AMP A++ CPELIFVP F Y S + +F +Y P SLDEAYL
Sbjct: 62 ARKFGVHSAMPSVTAKRKCPELIFVPHRFDVYRAVSRQIQAIFAEYTPLVEPLSLDEAYL 121
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+TE R ++ EIAEE+R + E LT SAGV+ N+ LAK+ SD KP+G FV+
Sbjct: 122 DVTENFRGLKLA-TEIAEEIRGRIRAETHLTASAGVSYNKFLAKMASDQRKPDGLFVITP 180
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
F+ +LP++K G+G T ++ + GI T ++ + + +F
Sbjct: 181 KHGP--DFVQALPVKKFHGVGPATAEKMKRL-GIETGADLKSRDLAFLQQHFGKSGPYFY 237
Query: 188 SVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRT 246
+ G+ R RKSI +E TF D L + + + + G+RG+T
Sbjct: 238 WIARGIDERKVKPDRIRKSIGAEDTFREDVHDLETARAGLKPLIDKVWHYCEASGIRGKT 297
Query: 247 LTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFN 302
+TLK+K A F TR+ T+ I+S ++ + A +LL P +RL+G+ ++ +
Sbjct: 298 MTLKVKWADFTQITRSKTIVAPIASVAEMSEIAELLLSPIFPAPKGIRLLGVTLSSLD 355
>gi|408793588|ref|ZP_11205194.1| ImpB/MucB/SamB family protein [Leptospira meyeri serovar Hardjo
str. Went 5]
gi|408462092|gb|EKJ85821.1| ImpB/MucB/SamB family protein [Leptospira meyeri serovar Hardjo
str. Went 5]
Length = 358
Score = 157 bits (398), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 109/305 (35%), Positives = 161/305 (52%), Gaps = 13/305 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR+A+P F A KLCP+ IF P F Y S R +F +Y SLDEAYL
Sbjct: 48 ARKFGVRSAIPCFQAYKLCPDAIFTPPRFEVYKSISKEIRSIFLEYTDLVEPLSLDEAYL 107
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLP 126
D+T + ++ IA+E+R +++ GLTCSAGVA N+ LAK+ S+ NKPNG + VLP
Sbjct: 108 DVTSNKLQIPLAST-IAKEIRKKIFDRTGLTCSAGVAQNKFLAKMASEKNKPNGLYVVLP 166
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFF 186
+ F+ +P+ GIGK T L + E + S L F A F+
Sbjct: 167 GEE---EKFLDDIPLYSFFGIGKKTYERLSQLGYTKGSELRKAEESFLVGEFGKMGAVFY 223
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
+ GL R KSI E TFS +ED A L L +++ L M ++ +G+
Sbjct: 224 -RMARGLDDREVIPFRDPKSIGVETTFSHDSEDFAYLLLTLENLSKELELRMGRKNKQGK 282
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL------KAELPVSLRLIGLRVT 299
TLTLK+K F V+ ++++ + ++++ + +S LL E +RL+G+ VT
Sbjct: 283 TLTLKIKFEDFTVKQKSISSESVFYLADNLFQQSSNLLANVWKENTEPMKKIRLLGISVT 342
Query: 300 QFNED 304
F+ D
Sbjct: 343 NFSSD 347
>gi|384420785|ref|YP_005630145.1| DNA polymerase IV [Xanthomonas oryzae pv. oryzicola BLS256]
gi|353463698|gb|AEQ97977.1| DNA polymerase IV [Xanthomonas oryzae pv. oryzicola BLS256]
Length = 369
Score = 157 bits (398), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 116/308 (37%), Positives = 169/308 (54%), Gaps = 15/308 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FG+R+AMP A +LCP+ IFVP DF +Y S R++F ++ SLDEAYL
Sbjct: 57 ARTFGIRSAMPAVRAERLCPDAIFVPPDFARYKAVSRQVREIFHRHTDLVEPLSLDEAYL 116
Query: 68 DITEVCRERGIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP 126
D+T+ + G+ EIA+ +RT + EE LT SAG+APN+ LAK+ SD KP+GQFV+
Sbjct: 117 DVTQA--KTGMQLATEIAQLIRTQIREETQLTASAGIAPNKFLAKIASDWRKPDGQFVIA 174
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM-LQKGSLLCAVFSHSTADF 185
R + F+ L + +I G+GKV + L GI T ++ L+ L A F S
Sbjct: 175 PSR--IDAFLLPLKVNRIPGVGKVMDGKL-AALGIVTVADLRLRPLEELQAHFG-SFGQS 230
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLR 243
G+ + +S+SSE TFS ED AL L + +AE ++
Sbjct: 231 LYRRARGIDERPVEPDQDVQSVSSEDTFS--EDLALDALDPHILRLAEKTWLATRRTERI 288
Query: 244 GRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELPVS--LRLIGLRVTQ 300
GRT+ LKLKT++F + TR+ T + S E + + A L + ELP RL+G+ ++
Sbjct: 289 GRTVVLKLKTSNFRILTRSCTPGQPPVSQEALAQIALALTRRVELPAQTRYRLVGVGLSG 348
Query: 301 FNEDKVRA 308
FN+ + RA
Sbjct: 349 FNDVEERA 356
>gi|433615571|ref|YP_007192366.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Sinorhizobium meliloti GR4]
gi|429553818|gb|AGA08767.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Sinorhizobium meliloti GR4]
Length = 369
Score = 157 bits (398), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 102/298 (34%), Positives = 156/298 (52%), Gaps = 7/298 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGV +AMP A++ CPELIFVP F Y S + +F +Y P SLDEAYL
Sbjct: 62 ARKFGVHSAMPSVTAKRKCPELIFVPHRFDVYRAVSRQIQAIFAEYTPLVEPLSLDEAYL 121
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+TE R ++ EIAEE+R + E LT SAGV+ N+ LAK+ SD KP+G FV+
Sbjct: 122 DVTENFRGLKLA-TEIAEEIRGRIRAETHLTASAGVSYNKFLAKMASDQRKPDGLFVITP 180
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
F+ +LP++K G+G T ++ + GI T ++ + + +F
Sbjct: 181 KHGP--DFVQALPVKKFHGVGPATAEKMKRL-GIETGADLKSRDLAFLQQHFGKSGPYFY 237
Query: 188 SVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRT 246
+ G+ R RKSI +E TF D L + + + + G+RG+T
Sbjct: 238 WIARGIDEREVKPDRIRKSIGAEDTFREDVHDLETARAGLKPLIDKVWHYCEASGIRGKT 297
Query: 247 LTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFN 302
+TLK+K A F TR+ T+ I+S ++ + A +LL P +RL+G+ ++ +
Sbjct: 298 MTLKVKWADFTQITRSKTIVAPIASVAEMSEIAELLLSPIFPAPKGIRLLGVTLSSLD 355
>gi|399887391|ref|ZP_10773268.1| DNA polymerase IV [Clostridium arbusti SL206]
Length = 347
Score = 157 bits (398), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 106/302 (35%), Positives = 167/302 (55%), Gaps = 11/302 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FGVR+AMP ++A+ CP IF+P +Y S+ +F + P S+DEAYL
Sbjct: 48 ARAFGVRSAMPIYMAKAKCPNGIFLPVRHERYREISNKVFNIFNEITPLIEPLSIDEAYL 107
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T V ++ + IA ++ + +E GL S G++ N+ LAK+ SD NKPNG V+
Sbjct: 108 DLTHVNKD----SLYIASFIKNRIKKETGLNISIGLSYNKFLAKLASDWNKPNGLKVIKK 163
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHSTADFF 186
+ + F L I K+ G+GK + L D+ GI T EE+ + + L +F + +
Sbjct: 164 SDVPEILF--PLSIDKVHGLGKKSVKKLNDI-GIFTVEELYKLPVNFLIDLFGKFGPEIY 220
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTF-SVTEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
+ G+ + R RKSI E T + T+DK + + A ++ M+ + L G+
Sbjct: 221 DRIR-GIDNREVKILRERKSIGKETTLINDTDDKEDIKPYIKSFASSIANIMESKNLSGK 279
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHA-SVLLKAELPVSLRLIGLRVTQFNED 304
+T+K+KT+SF T++ TL YI+S EDI K A S+L K +L +RLIGL ++ F E
Sbjct: 280 NITIKIKTSSFINHTKSKTLTHYINSEEDIYKEACSILEKLKLEEKIRLIGLSISSFKEK 339
Query: 305 KV 306
++
Sbjct: 340 RI 341
>gi|119616168|gb|EAW95762.1| polymerase (DNA directed) kappa, isoform CRA_a [Homo sapiens]
Length = 396
Score = 157 bits (398), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 85/174 (48%), Positives = 114/174 (65%), Gaps = 3/174 (1%)
Query: 77 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 135
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 221 GTSAQEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 279
Query: 136 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 195
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 280 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGS 338
Query: 196 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTL 249
T+ + RKS+S ERTFS Y E+ L+ D+QKE L+ + L L
Sbjct: 339 THLTRDGERKSMSVERTFSEINKAEEQYSLCQELCSELAQDLQKERLKKKYLPL 392
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/69 (63%), Positives = 53/69 (76%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFGVRAAMPGFIA++LCP+LI VP +F KY S +++ YDPNFMA SLDEAYL
Sbjct: 77 ARRFGVRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYL 136
Query: 68 DITEVCRER 76
+IT+ ER
Sbjct: 137 NITKHLEER 145
>gi|385323903|ref|YP_005878342.1| DNA polymerase IV (Pol IV) [Neisseria meningitidis 8013]
gi|385328701|ref|YP_005883004.1| DNA-damage-inducible protein P [Neisseria meningitidis alpha710]
gi|385850975|ref|YP_005897490.1| DNA polymerase IV [Neisseria meningitidis M04-240196]
gi|416169881|ref|ZP_11608241.1| DNA polymerase IV [Neisseria meningitidis OX99.30304]
gi|416182644|ref|ZP_11612119.1| DNA polymerase IV [Neisseria meningitidis M13399]
gi|416187280|ref|ZP_11614150.1| DNA polymerase IV [Neisseria meningitidis M0579]
gi|416212875|ref|ZP_11622033.1| DNA polymerase IV [Neisseria meningitidis M01-240013]
gi|421551063|ref|ZP_15997063.1| DNA polymerase IV [Neisseria meningitidis 69166]
gi|421555045|ref|ZP_16000984.1| DNA polymerase IV [Neisseria meningitidis 98008]
gi|421556829|ref|ZP_16002739.1| DNA polymerase IV [Neisseria meningitidis 80179]
gi|421561526|ref|ZP_16007368.1| impB/mucB/samB family protein [Neisseria meningitidis NM2657]
gi|433471763|ref|ZP_20429146.1| impB/mucB/samB family protein [Neisseria meningitidis 68094]
gi|433477892|ref|ZP_20435210.1| impB/mucB/samB family protein [Neisseria meningitidis 70012]
gi|433488729|ref|ZP_20445887.1| impB/mucB/samB family protein [Neisseria meningitidis M13255]
gi|433509644|ref|ZP_20466510.1| impB/mucB/samB family protein [Neisseria meningitidis 12888]
gi|433511655|ref|ZP_20468478.1| impB/mucB/samB family protein [Neisseria meningitidis 4119]
gi|433522170|ref|ZP_20478857.1| impB/mucB/samB family protein [Neisseria meningitidis 61103]
gi|433526276|ref|ZP_20482906.1| impB/mucB/samB family protein [Neisseria meningitidis 69096]
gi|433539224|ref|ZP_20495699.1| impB/mucB/samB family protein [Neisseria meningitidis 70030]
gi|261392290|emb|CAX49816.1| DNA polymerase IV (Pol IV) [Neisseria meningitidis 8013]
gi|308389553|gb|ADO31873.1| DNA-damage-inducible protein P [Neisseria meningitidis alpha710]
gi|325130510|gb|EGC53265.1| DNA polymerase IV [Neisseria meningitidis OX99.30304]
gi|325134571|gb|EGC57215.1| DNA polymerase IV [Neisseria meningitidis M13399]
gi|325136508|gb|EGC59112.1| DNA polymerase IV [Neisseria meningitidis M0579]
gi|325144732|gb|EGC67027.1| DNA polymerase IV [Neisseria meningitidis M01-240013]
gi|325205798|gb|ADZ01251.1| DNA polymerase IV [Neisseria meningitidis M04-240196]
gi|389605414|emb|CCA44332.1| DNA polymerase IV [Neisseria meningitidis alpha522]
gi|402328597|gb|EJU63964.1| DNA polymerase IV [Neisseria meningitidis 69166]
gi|402332198|gb|EJU67529.1| DNA polymerase IV [Neisseria meningitidis 98008]
gi|402336083|gb|EJU71345.1| DNA polymerase IV [Neisseria meningitidis 80179]
gi|402337822|gb|EJU73068.1| impB/mucB/samB family protein [Neisseria meningitidis NM2657]
gi|432207720|gb|ELK63708.1| impB/mucB/samB family protein [Neisseria meningitidis 68094]
gi|432214708|gb|ELK70604.1| impB/mucB/samB family protein [Neisseria meningitidis 70012]
gi|432222595|gb|ELK78386.1| impB/mucB/samB family protein [Neisseria meningitidis M13255]
gi|432246145|gb|ELL01602.1| impB/mucB/samB family protein [Neisseria meningitidis 12888]
gi|432246416|gb|ELL01864.1| impB/mucB/samB family protein [Neisseria meningitidis 4119]
gi|432258548|gb|ELL13830.1| impB/mucB/samB family protein [Neisseria meningitidis 61103]
gi|432261040|gb|ELL16297.1| impB/mucB/samB family protein [Neisseria meningitidis 69096]
gi|432272947|gb|ELL28049.1| impB/mucB/samB family protein [Neisseria meningitidis 70030]
Length = 352
Score = 157 bits (398), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 104/299 (34%), Positives = 163/299 (54%), Gaps = 17/299 (5%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG+ +AM A++LCP+ ++VP F Y S VF +Y SLDEAYL
Sbjct: 49 ARQFGLHSAMSVATAKRLCPQAVYVPPHFDLYRQVSAQIHAVFRRYTDLIEPLSLDEAYL 108
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T + + E+A+E+R +++ E GLT SAG+APN+ LAK+ SD KPNGQFVLP
Sbjct: 109 DVTRNFKNIPYAS-EVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPP 167
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADF 185
+ VM F+ +LP+ KI G+GKVT ++ + G+ T ++ ++G LL +H
Sbjct: 168 HK--VMAFLETLPLGKIPGVGKVTLKKMQSL-GMRTAGDLRRFERGELL----NHFGRYG 220
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLR 243
+ L G+ P R+ + ++ ED L L +AE L + ++ +
Sbjct: 221 YRLYDLVRGTDERPVKAERERLQISTEITLPEDLPLEQAAGHLPHLAEDLWRQITRKNVE 280
Query: 244 GRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV----SLRLIGLRV 298
+++TLKLKT F + TR +T + +L+ A +L+ A +P + RLIG+ V
Sbjct: 281 AQSVTLKLKTYDFRIITRTLTYSSVLPDCAALLQAAQMLM-ARVPPQTEDAFRLIGIGV 338
>gi|71756015|ref|XP_828922.1| DNA polymerase kappa [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|70834308|gb|EAN79810.1| DNA polymerase kappa, putative [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
Length = 497
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 101/307 (32%), Positives = 162/307 (52%), Gaps = 18/307 (5%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR G+R MPGF+A K+CP L+ +P DF Y S+ R++ +YDPN+++ LD+ L
Sbjct: 100 ARGRGIRQGMPGFLALKICPNLLILPPDFDAYNEESNTVRRIVAEYDPNYISFGLDDFTL 159
Query: 68 DITE-VCRERGISGIE-IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL 125
+++ + R G E +A ELR V+ E LT SAG+ P LAK+ S+INKPNGQ L
Sbjct: 160 EVSAYIERFEGTKTAEDVASELRVRVFGETKLTASAGIGPTAALAKIASNINKPNGQHDL 219
Query: 126 P-NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTAD 184
+ R VMT++ L +R + G+GKVTE +L+ + GI T ++ + LC + ++
Sbjct: 220 NLHTRGDVMTYVRDLGLRSVPGVGKVTEALLKGL-GITTLSDIYNRRVELCYILHNNLFR 278
Query: 185 FFLSVGLGL-------GSTNT-----PQARFRKSISSERTFSVTEDKALLYRKLAEIAEM 232
F L +G+ + NT RK+ISSER+ + K + L +
Sbjct: 279 FLLGASIGIMQWPDAATAANTENCEGATGEQRKAISSERSITTPRTKEGMQEMLDTVFNG 338
Query: 233 LSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL--KAELPVS 290
+M+K L R ++L+++ AS+ + +L +Y S + + LL A
Sbjct: 339 AYEEMRKSELMCRRISLRIRWASYRYQQYTKSLIQYSDDSATLRRAVDGLLLPHAAKYSE 398
Query: 291 LRLIGLR 297
+ L+G+R
Sbjct: 399 ISLLGVR 405
>gi|421544771|ref|ZP_15990844.1| DNA polymerase IV [Neisseria meningitidis NM140]
gi|421546859|ref|ZP_15992901.1| DNA polymerase IV [Neisseria meningitidis NM183]
gi|421549106|ref|ZP_15995128.1| DNA polymerase IV [Neisseria meningitidis NM2781]
gi|421553074|ref|ZP_15999043.1| DNA polymerase IV [Neisseria meningitidis NM576]
gi|421559533|ref|ZP_16005406.1| DNA polymerase IV [Neisseria meningitidis 92045]
gi|433537101|ref|ZP_20493603.1| impB/mucB/samB family protein [Neisseria meningitidis 77221]
gi|402322503|gb|EJU57961.1| DNA polymerase IV [Neisseria meningitidis NM183]
gi|402322684|gb|EJU58135.1| DNA polymerase IV [Neisseria meningitidis NM140]
gi|402324927|gb|EJU60349.1| DNA polymerase IV [Neisseria meningitidis NM2781]
gi|402329587|gb|EJU64947.1| DNA polymerase IV [Neisseria meningitidis NM576]
gi|402335332|gb|EJU70598.1| DNA polymerase IV [Neisseria meningitidis 92045]
gi|432272862|gb|ELL27967.1| impB/mucB/samB family protein [Neisseria meningitidis 77221]
Length = 352
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 104/299 (34%), Positives = 162/299 (54%), Gaps = 17/299 (5%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG+ +AM A++LCP+ ++VP F Y S VF +Y SLDEAYL
Sbjct: 49 ARQFGLHSAMSVATAKRLCPQAVYVPPHFDLYRQVSAQIHAVFRRYTDLIEPLSLDEAYL 108
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T + + E+A+E+R +++ E GLT SAG+APN+ LAK+ SD KPNGQFVLP
Sbjct: 109 DVTRNFKNIPYAS-EVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPP 167
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADF 185
+ VM F+ +LP+ KI G+GKVT ++ + G+ T ++ +G LL +H
Sbjct: 168 YK--VMAFLETLPLGKIPGVGKVTLKKMQSL-GMQTAGDLRRFDRGELL----NHFGRYG 220
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLR 243
+ L G+ P R+ + ++ ED L L +AE L + ++ +
Sbjct: 221 YRLYDLARGTDERPVKAERERLQISTEITLPEDLPLEQAAGHLPHLAEDLWRQITRKNVE 280
Query: 244 GRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV----SLRLIGLRV 298
+++TLKLKT F + TR +T + +L+ A +L+ A +P + RLIG+ V
Sbjct: 281 AQSVTLKLKTYDFRIITRTLTYSSVLPDCAALLQAAQMLM-ARVPPQTEDAFRLIGIGV 338
>gi|385335758|ref|YP_005889705.1| DNA polymerase IV [Neisseria gonorrhoeae TCDC-NG08107]
gi|317164301|gb|ADV07842.1| DNA polymerase IV [Neisseria gonorrhoeae TCDC-NG08107]
Length = 368
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 104/299 (34%), Positives = 162/299 (54%), Gaps = 17/299 (5%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG+ +AM A++LCP+ ++VP F Y S VF +Y S DEAYL
Sbjct: 65 ARQFGLHSAMSVATAKRLCPQAVYVPPHFDLYRQVSAQIHAVFRRYTDLIEPLSPDEAYL 124
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T + +G E+A+E+R +++ E GLT SAG+APN+ LAK+ SD KPNGQFVLP
Sbjct: 125 DVTRNFKNIPYAG-EVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPP 183
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADF 185
+ VM F+ +LP+ KI G GKVT ++ + G+ T ++ ++G LL +H
Sbjct: 184 HK--VMAFLETLPLGKIPGAGKVTLKKMQSL-GMRTAGDLRRFERGELL----NHFGRYG 236
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLR 243
+ L G+ P R+ + ++ ED L L +AE L + ++ +
Sbjct: 237 YRLYDLARGTDEHPVKAERERLQISTEITLPEDLPLGQAAGHLPHLAEDLWRQITRKNVE 296
Query: 244 GRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV----SLRLIGLRV 298
+++TLKLKT F + TR +T + +L+ A +L+ A +P + RLIG+ V
Sbjct: 297 AQSVTLKLKTYDFRIITRTLTYSSVLPDCAALLQAAQMLM-ARVPPQTEDAFRLIGIGV 354
>gi|387790872|ref|YP_006255937.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Solitalea canadensis DSM 3403]
gi|379653705|gb|AFD06761.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Solitalea canadensis DSM 3403]
Length = 366
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 107/302 (35%), Positives = 167/302 (55%), Gaps = 13/302 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFGVR+AMP A++LCP IFV F Y S R++F +Y SLDEAYL
Sbjct: 55 ARRFGVRSAMPSKKAQQLCPHAIFVRPRFAAYKEVSQKIREIFHRYTDLIEPLSLDEAYL 114
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLP 126
D+T E G S IEIA +++ ++ +E LT SAGV+ N+ +AK+ SDINKP+G F+ P
Sbjct: 115 DVTHDKLEIG-SAIEIAMQIKKAIKDELNLTASAGVSVNKFVAKIASDINKPDGLTFIGP 173
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILR--DVFGINTCEEMLQKGSLLCAVFSHSTAD 184
+ + +F+ SL + K GIG+VT ++ ++F +++ ++ LL
Sbjct: 174 S---KIESFMESLAVEKFHGIGRVTAEKMKRMNLFTGADLKKLTEEQLLLHF---GKPGK 227
Query: 185 FFLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLR 243
F+ + G+ R KS+ +E TF D + +L +IA+ ++ +Q+ L+
Sbjct: 228 FYYKIVRGIDDREVQPNRVTKSVGAEDTFPYDLTDLEEMNVELDKIAKTVADRLQRYQLK 287
Query: 244 GRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELP--VSLRLIGLRVTQF 301
GRTLTLK+K + F+ TR + I+ + I + A LL P +RL+G+ ++ F
Sbjct: 288 GRTLTLKIKYSDFKQITRNQSFLHEINDLQTIAQTAKELLLKTSPEDKKIRLLGITLSNF 347
Query: 302 NE 303
NE
Sbjct: 348 NE 349
>gi|121635137|ref|YP_975382.1| DNA polymerase IV [Neisseria meningitidis FAM18]
gi|385340339|ref|YP_005894211.1| DNA polymerase IV [Neisseria meningitidis G2136]
gi|416178473|ref|ZP_11610615.1| DNA polymerase IV [Neisseria meningitidis M6190]
gi|416192460|ref|ZP_11616642.1| DNA polymerase IV [Neisseria meningitidis ES14902]
gi|416203316|ref|ZP_11620044.1| DNA polymerase IV [Neisseria meningitidis 961-5945]
gi|421542743|ref|ZP_15988849.1| DNA polymerase IV [Neisseria meningitidis NM255]
gi|433467593|ref|ZP_20425047.1| impB/mucB/samB family protein [Neisseria meningitidis 87255]
gi|433492845|ref|ZP_20449935.1| impB/mucB/samB family protein [Neisseria meningitidis NM586]
gi|433494972|ref|ZP_20452039.1| impB/mucB/samB family protein [Neisseria meningitidis NM762]
gi|433497141|ref|ZP_20454176.1| impB/mucB/samB family protein [Neisseria meningitidis M7089]
gi|433499204|ref|ZP_20456211.1| impB/mucB/samB family protein [Neisseria meningitidis M7124]
gi|433501175|ref|ZP_20458160.1| impB/mucB/samB family protein [Neisseria meningitidis NM174]
gi|433503328|ref|ZP_20460288.1| impB/mucB/samB family protein [Neisseria meningitidis NM126]
gi|189027672|sp|A1KUQ3.1|DPO4_NEIMF RecName: Full=DNA polymerase IV; Short=Pol IV
gi|120866843|emb|CAM10601.1| impB/mucB/samB family protein [Neisseria meningitidis FAM18]
gi|325132193|gb|EGC54889.1| DNA polymerase IV [Neisseria meningitidis M6190]
gi|325138126|gb|EGC60699.1| DNA polymerase IV [Neisseria meningitidis ES14902]
gi|325142626|gb|EGC65017.1| DNA polymerase IV [Neisseria meningitidis 961-5945]
gi|325198583|gb|ADY94039.1| DNA polymerase IV [Neisseria meningitidis G2136]
gi|402316662|gb|EJU52204.1| DNA polymerase IV [Neisseria meningitidis NM255]
gi|432202427|gb|ELK58491.1| impB/mucB/samB family protein [Neisseria meningitidis 87255]
gi|432227708|gb|ELK83416.1| impB/mucB/samB family protein [Neisseria meningitidis NM586]
gi|432229620|gb|ELK85305.1| impB/mucB/samB family protein [Neisseria meningitidis NM762]
gi|432233226|gb|ELK88858.1| impB/mucB/samB family protein [Neisseria meningitidis M7089]
gi|432233631|gb|ELK89257.1| impB/mucB/samB family protein [Neisseria meningitidis M7124]
gi|432235148|gb|ELK90765.1| impB/mucB/samB family protein [Neisseria meningitidis NM174]
gi|432239638|gb|ELK95186.1| impB/mucB/samB family protein [Neisseria meningitidis NM126]
Length = 352
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 104/299 (34%), Positives = 163/299 (54%), Gaps = 17/299 (5%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG+ +AM A++LCP+ ++VP F Y S VF +Y SLDEAYL
Sbjct: 49 ARQFGLHSAMSVATAKRLCPQAVYVPPHFDLYRQVSAQIHAVFRRYTDLIEPLSLDEAYL 108
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T + + E+A+E+R +++ E GLT SAG+APN+ LAK+ SD KPNGQFVLP
Sbjct: 109 DVTRNFKNIPYAS-EVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPP 167
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADF 185
+ VM F+ +LP+ KI G+GKVT ++ + G+ T ++ ++G LL +H
Sbjct: 168 HK--VMAFLETLPLGKIPGVGKVTLKKMQSL-GMRTAGDLRRFERGELL----NHFGRYG 220
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLR 243
+ L G+ P R+ + ++ ED L L +AE L + ++ +
Sbjct: 221 YRLYDLVRGTDERPVKAERERLQISTEITLPEDLPLEQAAGHLPHLAEDLWRQITRKNVE 280
Query: 244 GRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV----SLRLIGLRV 298
+++TLKLKT F + TR +T + +L+ A +L+ A +P + RLIG+ V
Sbjct: 281 AQSVTLKLKTYDFRIITRTLTYSSVLPDCAALLQAAQMLI-ARVPPQTEDAFRLIGIGV 338
>gi|114321922|ref|YP_743605.1| DNA-directed DNA polymerase [Alkalilimnicola ehrlichii MLHE-1]
gi|122310678|sp|Q0A4X2.1|DPO4_ALHEH RecName: Full=DNA polymerase IV; Short=Pol IV
gi|114228316|gb|ABI58115.1| DNA-directed DNA polymerase [Alkalilimnicola ehrlichii MLHE-1]
Length = 355
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 101/297 (34%), Positives = 168/297 (56%), Gaps = 12/297 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARR G+ +AMP + A +LCP+ +F+ F Y S + +F +Y P SLDEAYL
Sbjct: 50 ARRHGIHSAMPAWRAARLCPDAVFLRPRFDVYRSISAQIQALFREYTPLVEPLSLDEAYL 109
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+++ C RG S IA E+R ++E+ GLT SAGV+ N+ LAK+ SD++KP+G V+P
Sbjct: 110 DVSD-CPRRGGSATLIAREIRARIHEQTGLTASAGVSCNKFLAKIASDLDKPDGLHVIPP 168
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
++ F+++LP+ KI G+G+ T + + G+ T ++ + L S A F+
Sbjct: 169 EQ--AEAFVAALPVGKIHGVGQATRQRM-ERMGVRTGADLRRLTLLELQRAFGSRARFYY 225
Query: 188 SVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRT 246
+ G R RKS+ +E TF + A + ++A +A+ ++A + + GL GRT
Sbjct: 226 ELARGRDERPVRPRRERKSVGAETTFGEDLNNPAEMLERMAPLADKVAASLHRRGLAGRT 285
Query: 247 LTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK----AELPVSLRLIGLRVT 299
+TLK+K F TR+++ + + S+++I LL+ + PV RL+G+ V+
Sbjct: 286 VTLKVKYHDFRQITRSLS-GRPVQSADEIRARLPALLQDTEAGDRPV--RLLGVTVS 339
>gi|418517734|ref|ZP_13083893.1| DNA polymerase IV [Xanthomonas axonopodis pv. malvacearum str.
GSPB1386]
gi|410705578|gb|EKQ64049.1| DNA polymerase IV [Xanthomonas axonopodis pv. malvacearum str.
GSPB1386]
Length = 359
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 110/302 (36%), Positives = 163/302 (53%), Gaps = 13/302 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FG+R+AMP A +LCP+ IFVP DF +Y S R++F ++ SLDEAYL
Sbjct: 47 ARIFGIRSAMPAVRAERLCPDAIFVPPDFARYKAVSRQVREIFHRHTELVEPLSLDEAYL 106
Query: 68 DITEVCRERGIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP 126
D+T + G+ E+A+ +RT + EE LT SAG+APN+ LAK+ SD KP+GQFV+
Sbjct: 107 DVTHA--KTGMQLATEVAQLIRTQIREETQLTASAGIAPNKFLAKIASDWRKPDGQFVIA 164
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFF 186
R V F+ L + +I G+GKV + L GI T ++ Q+ S
Sbjct: 165 PSR--VDAFLLPLKVNRIPGVGKVMDGKL-AALGIVTVADLRQRPLEELQAHFGSFGQSL 221
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRG 244
G+ + +S+SSE TFS ED AL L + +AE ++ G
Sbjct: 222 YRRARGIDERPVEPDQEVQSVSSEDTFS--EDLALDALAPHILRLAEKTWLATRRTERIG 279
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELPVS--LRLIGLRVTQF 301
RT+ LKLKT++F + TR+ T ++ +S E + + A L + ELP RL+G+ + F
Sbjct: 280 RTVVLKLKTSNFRILTRSYTPEQPPTSQEALAQIALALTRRVELPAQTRYRLVGVGLGGF 339
Query: 302 NE 303
++
Sbjct: 340 SD 341
>gi|189912993|ref|YP_001964882.1| DNA polymerase IV [Leptospira biflexa serovar Patoc strain 'Patoc 1
(Ames)']
gi|189913320|ref|YP_001964549.1| DNA polymerase IV [Leptospira biflexa serovar Patoc strain 'Patoc 1
(Paris)']
gi|167777669|gb|ABZ95969.1| DNA damage-inducible protein DNA polymerase [Leptospira biflexa
serovar Patoc strain 'Patoc 1 (Ames)']
gi|167781388|gb|ABZ99685.1| DNA polymerase IV, devoid of proofreading, damage-inducible protein
P [Leptospira biflexa serovar Patoc strain 'Patoc 1
(Paris)']
Length = 358
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 107/310 (34%), Positives = 168/310 (54%), Gaps = 15/310 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG+R+A+ + A KLCP+ IF P F Y S R++F +Y SLDEAYL
Sbjct: 48 ARKFGIRSAISCYQAYKLCPDAIFTPPRFEVYKSVSKEIRRIFLEYTDLVEPLSLDEAYL 107
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLP 126
D+T ++ IA+E+R ++E GLTCSAGVA N+ LAK+ S+ NKPNG + VLP
Sbjct: 108 DVTTNKPNLPLAST-IAKEIRKKIWEGTGLTCSAGVATNKFLAKMASEKNKPNGLYVVLP 166
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM-LQKGSLLCAVFSHSTADF 185
+ ++F+ LP+ + GIGK T + + G + +++ L S L F + F
Sbjct: 167 GEE---LSFLDELPLYQFFGIGKKTYEKFQHL-GFSKGKDLRLADESFLLKEFGKMGSVF 222
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRG 244
+ + G+ R KSI E TF+ +ED + L +A+ L M K+ +G
Sbjct: 223 Y-RMARGIDDREVIPFRDPKSIGVETTFTHDSEDFSYFLLTLETLAKELEGRMLKKNKKG 281
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL------KAELPVSLRLIGLRV 298
+TLTLK+K F V+ +++T ++++ + +S LL + P +RL+GL V
Sbjct: 282 KTLTLKVKFEDFTVKQKSITSDSVFFLADNLFQQSSNLLANVWKDNFDPPKKIRLLGLSV 341
Query: 299 TQFNEDKVRA 308
T F E +++
Sbjct: 342 TNFYEKEIKG 351
>gi|254805229|ref|YP_003083450.1| DNA polymerase IV [Neisseria meningitidis alpha14]
gi|421568021|ref|ZP_16013752.1| DNA polymerase IV [Neisseria meningitidis NM3001]
gi|254668771|emb|CBA06675.1| DNA-damage-inducible protein p [Neisseria meningitidis alpha14]
gi|254672331|emb|CBA05492.1| DNA polymerase IV [Neisseria meningitidis alpha275]
gi|402342966|gb|EJU78122.1| DNA polymerase IV [Neisseria meningitidis NM3001]
Length = 352
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 104/299 (34%), Positives = 163/299 (54%), Gaps = 17/299 (5%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG+ +AM A++LCP+ ++VP F Y S VF +Y SLDEAYL
Sbjct: 49 ARQFGLHSAMSVATAKRLCPQAVYVPPHFDLYRQVSAQIHAVFRRYTDLIEPLSLDEAYL 108
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T + + E+A+E+R +++ E GLT SAG+APN+ LAK+ SD KPNGQFVLP
Sbjct: 109 DVTRNFKNIPYAS-EVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPP 167
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADF 185
+ VM F+ +LP+ KI G+GKVT ++ + G+ T ++ ++G LL +H
Sbjct: 168 HK--VMAFLETLPLGKIPGVGKVTLKKMQSL-GMRTAGDLRRFERGELL----NHFGRYG 220
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLR 243
+ L G+ P R+ + ++ ED L L +AE L + ++ +
Sbjct: 221 YRLYDLVRGTDERPVKAERERLQISTEITLPEDLPLEQAAGHLPHLAEDLWRQITRKNVE 280
Query: 244 GRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV----SLRLIGLRV 298
+++TLKLKT F + TR +T + +L+ A +L+ A +P + RLIG+ V
Sbjct: 281 AQSVTLKLKTYDFRIITRTLTYSSVLPDCAALLQAAQMLM-ARVPPQTEDAFRLIGIGV 338
>gi|384531775|ref|YP_005717379.1| DNA-directed DNA polymerase [Sinorhizobium meliloti BL225C]
gi|333813951|gb|AEG06619.1| DNA-directed DNA polymerase [Sinorhizobium meliloti BL225C]
Length = 369
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 101/298 (33%), Positives = 156/298 (52%), Gaps = 7/298 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGV +AMP A++ CPELIFVP F Y S + +F +Y P SLDEAYL
Sbjct: 62 ARKFGVHSAMPSVTAKRKCPELIFVPHRFDVYRAVSRQIQAIFAEYTPLVEPLSLDEAYL 121
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+TE R ++ EIAEE+R + E LT SAG++ N+ LAK+ SD KP+G FV+
Sbjct: 122 DVTENFRGLKLA-TEIAEEIRGRIRAETHLTASAGISYNKFLAKMASDQRKPDGLFVITP 180
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
F+ +LP++K G+G T ++ + GI T ++ + + +F
Sbjct: 181 KHGP--DFVQALPVKKFHGVGPATAEKMKRL-GIETGADLKSRDLAFLQQHFGKSGPYFY 237
Query: 188 SVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRT 246
+ G+ R RKSI +E TF D L + + + + G+RG+T
Sbjct: 238 WIARGIDEREVKPDRIRKSIGAEDTFREDVHDLETARAGLKPLIDKVWHYCEASGIRGKT 297
Query: 247 LTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFN 302
+TLK+K A F TR+ T+ I+S ++ + A +LL P +RL+G+ ++ +
Sbjct: 298 MTLKVKWADFTQITRSKTIVAPIASVAEMSEIAELLLSPIFPAPKGIRLLGVTLSSLD 355
>gi|304387164|ref|ZP_07369408.1| DNA-directed DNA polymerase IV [Neisseria meningitidis ATCC 13091]
gi|304338768|gb|EFM04878.1| DNA-directed DNA polymerase IV [Neisseria meningitidis ATCC 13091]
Length = 342
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 104/299 (34%), Positives = 163/299 (54%), Gaps = 17/299 (5%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG+ +AM A++LCP+ ++VP F Y S VF +Y SLDEAYL
Sbjct: 39 ARQFGLHSAMSVATAKRLCPQAVYVPPHFDLYRQVSAQIHAVFRRYTDLIEPLSLDEAYL 98
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T + + E+A+E+R +++ E GLT SAG+APN+ LAK+ SD KPNGQFVLP
Sbjct: 99 DVTRNFKNIPYAS-EVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPP 157
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADF 185
+ VM F+ +LP+ KI G+GKVT ++ + G+ T ++ ++G LL +H
Sbjct: 158 HK--VMAFLETLPLGKIPGVGKVTLKKMQSL-GMRTAGDLRRFERGELL----NHFGRYG 210
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLR 243
+ L G+ P R+ + ++ ED L L +AE L + ++ +
Sbjct: 211 YRLYDLVRGTDERPVKAERERLQISTEITLPEDLPLEQAAGHLPHLAEDLWRQITRKNVE 270
Query: 244 GRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV----SLRLIGLRV 298
+++TLKLKT F + TR +T + +L+ A +L+ A +P + RLIG+ V
Sbjct: 271 AQSVTLKLKTYDFRIITRTLTYSSVLPDCAALLQAAQMLM-ARVPPQTEDAFRLIGIGV 328
>gi|261364541|ref|ZP_05977424.1| DNA-directed DNA polymerase [Neisseria mucosa ATCC 25996]
gi|288567106|gb|EFC88666.1| DNA-directed DNA polymerase [Neisseria mucosa ATCC 25996]
Length = 352
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 102/301 (33%), Positives = 161/301 (53%), Gaps = 15/301 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG+ +AM A++LCP+ ++VP F Y S VF +Y SLDEAYL
Sbjct: 49 ARQFGLHSAMSVATAKRLCPQAVYVPPHFDLYRQVSAQIHAVFRRYTDLIEPLSLDEAYL 108
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T + + E+A E+R +++ E GLT SAG+APN+ LAK+ SD KPNGQFVLP
Sbjct: 109 DVTHNFKNIPYAS-EVATEIRAAIFAEIGLTASAGIAPNKFLAKIASDWRKPNGQFVLPP 167
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADF 185
+ +M F+ +LP+ KI G+GKVT ++ + G+ T ++ ++G LL +H
Sbjct: 168 HK--IMAFLETLPLGKIPGVGKVTLKKMQSL-GMQTAGDLRRFERGELL----NHFGRYG 220
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYR--KLAEIAEMLSADMQKEGLR 243
+ L G+ P R+ + ++ ED +L L +AE L + ++ +
Sbjct: 221 YRLYDLARGTDERPVKAERERLQISTEITLPEDLSLEQAGGHLPHLAEDLWRQITRKNVE 280
Query: 244 GRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV---SLRLIGLRVTQ 300
+ +TLKLKT F + TR++T + + +L A L++ P + RLIG+ V
Sbjct: 281 AKGVTLKLKTHDFRIITRSLTYSSVLPDIDALLCAAQTLMQRVPPQHEDAFRLIGIGVNH 340
Query: 301 F 301
Sbjct: 341 L 341
>gi|296446214|ref|ZP_06888161.1| DNA-directed DNA polymerase [Methylosinus trichosporium OB3b]
gi|296256251|gb|EFH03331.1| DNA-directed DNA polymerase [Methylosinus trichosporium OB3b]
Length = 357
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 110/302 (36%), Positives = 159/302 (52%), Gaps = 17/302 (5%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR+AMP A++ CPELIFVP F Y S R +F Y P SLDEAYL
Sbjct: 50 ARKFGVRSAMPSVTAQRRCPELIFVPPRFDVYREVSRGLRAIFLDYTPLVEPLSLDEAYL 109
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+TE R+ S IAEE+R + EE GLT SAGV+ N+ LAK+ SD KP+G FV+
Sbjct: 110 DVTE-NRKAMASATRIAEEIRARIKEETGLTASAGVSYNKFLAKLASDHRKPDGLFVV-T 167
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM-LQKGSLLCAVFSHSTADFF 186
+M +F++ L + + G+G T + + GI T ++ Q L F S A F+
Sbjct: 168 PQMG-PSFVADLAVGRFHGVGPATTKKM-NALGIETGRDLRAQSLEFLQRNFGKSGA-FY 224
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFSV-----TEDKALLYRKLAEIAEMLSADMQKEG 241
+ G+ R RKSI +E TF+ E +A LA I + + Q+
Sbjct: 225 YGIARGVDERPVRPDRIRKSIGAEVTFARDLHAHEEARA----ALAPIVARVWSHCQRAA 280
Query: 242 LRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL--PVSLRLIGLRVT 299
GRT+T+K+K A F TR TL ++ + ++ + A L+ P +RL+G+ ++
Sbjct: 281 TSGRTVTVKVKYADFRQITRRSTLAAPVAGAAELERSALALMHPLFPSPAGVRLLGVTLS 340
Query: 300 QF 301
Sbjct: 341 SL 342
>gi|149177333|ref|ZP_01855938.1| DNA-damage-inducible protein P [Planctomyces maris DSM 8797]
gi|148843858|gb|EDL58216.1| DNA-damage-inducible protein P [Planctomyces maris DSM 8797]
Length = 388
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 106/301 (35%), Positives = 164/301 (54%), Gaps = 12/301 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGV +AMP AR+LCP+ F P + Y S +K+F KY P SLDEA+L
Sbjct: 40 ARKFGVHSAMPMKTARQLCPQAHFFPVRMSDYAEVSQSLQKIFRKYTPLVEPLSLDEAFL 99
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D++ G +G EIA ++ V L S GVAPN+ LAK+ SD +KP+G V+
Sbjct: 100 DVSGSQLLFG-NGREIAASIKQEVRHSLQLIASVGVAPNKFLAKIASDADKPDGLVVVEP 158
Query: 128 DRMAVMTFISSLPIRKIGGIGKV-TEHILRDVFGINTCEEM-LQKGSLLCAVFSHSTADF 185
D+ + F+ LP+ ++ GIGK+ T+ R GI T ++ + + +L +F
Sbjct: 159 DK--IQEFLDPLPVSRVWGIGKMATQRFNR--LGIQTISQVRVLEPKILTELFGEQGLHL 214
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRG 244
+ ++ GL R KSIS E TFS D +L L ++ E +S ++K LRG
Sbjct: 215 W-NLSQGLDERAVIPERQAKSISRETTFSSDVNDLEILRIILMDLVEDVSRRLRKNKLRG 273
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL---PVSLRLIGLRVTQF 301
+T+ LK++ F TR++T+ + + +I + A ++L +L P+S+RLIG+ VT F
Sbjct: 274 KTIQLKIRYDDFSTFTRSITVSQPTDLTREIEQSALLMLDQKLPERPLSIRLIGVGVTGF 333
Query: 302 N 302
Sbjct: 334 Q 334
>gi|296314223|ref|ZP_06864164.1| DNA-directed DNA polymerase [Neisseria polysaccharea ATCC 43768]
gi|296839124|gb|EFH23062.1| DNA-directed DNA polymerase [Neisseria polysaccharea ATCC 43768]
Length = 352
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 104/299 (34%), Positives = 162/299 (54%), Gaps = 17/299 (5%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG+ +AM A++LCP+ ++VP F Y S VF +Y SLDEAYL
Sbjct: 49 ARQFGLHSAMSVATAKRLCPQAVYVPPHFDLYRQVSAQIHAVFRRYTDLIEPLSLDEAYL 108
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T + + E+A+E+R +++ E GLT SAG+APN+ LAK+ SD KPNGQFVLP
Sbjct: 109 DVTRNFKNIPYAS-EVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPP 167
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADF 185
+ VM F+ +LP+ KI G+GKVT ++ + G+ T ++ ++G LL +H
Sbjct: 168 QK--VMAFLETLPLGKIPGVGKVTLKKMQSL-GMQTAGDLRRFERGELL----NHFGRYG 220
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLR 243
+ L G+ P R+ + ++ ED L L +AE L + ++ +
Sbjct: 221 YRLYDLARGTDERPVKAERERLQISTEITLPEDLPLEQAAGHLPHLAEDLWRQITRKNVE 280
Query: 244 GRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV----SLRLIGLRV 298
+++TLKLKT F + TR +T + +L+ A +L A +P + RLIG+ V
Sbjct: 281 AQSVTLKLKTYDFRIITRTLTYSSVLPDCVALLQ-AVQMLMARVPPQTEDAFRLIGIGV 338
>gi|161870317|ref|YP_001599487.1| DNA polymerase IV [Neisseria meningitidis 053442]
gi|161595870|gb|ABX73530.1| putative DNA-damage inducible protein P [Neisseria meningitidis
053442]
Length = 342
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 104/299 (34%), Positives = 163/299 (54%), Gaps = 17/299 (5%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG+ +AM A++LCP+ ++VP F Y S VF +Y SLDEAYL
Sbjct: 39 ARQFGLHSAMSVATAKRLCPQAVYVPPHFDLYRQVSAQIHAVFRRYTDLIEPLSLDEAYL 98
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T + + E+A+E+R +++ E GLT SAG+APN+ LAK+ SD KPNGQFVLP
Sbjct: 99 DVTRNFKNIPYAS-EVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPP 157
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADF 185
+ VM F+ +LP+ KI G+GKVT ++ + G+ T ++ ++G LL +H
Sbjct: 158 HK--VMAFLETLPLGKIPGVGKVTLKKMQSL-GMRTAGDLRRFERGELL----NHFGRYG 210
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLR 243
+ L G+ P R+ + ++ ED L L +AE L + ++ +
Sbjct: 211 YRLYDLVRGTDERPVKAERERLQISTEITLPEDLPLEQAAGHLPHLAEDLWRQITRKNVE 270
Query: 244 GRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV----SLRLIGLRV 298
+++TLKLKT F + TR +T + +L+ A +L+ A +P + RLIG+ V
Sbjct: 271 AQSVTLKLKTYDFRIITRTLTYSSVLPDCAALLQAAQMLI-ARVPPQTEDAFRLIGIGV 328
>gi|357032073|ref|ZP_09094013.1| DNA polymerase IV [Gluconobacter morbifer G707]
gi|356414300|gb|EHH67947.1| DNA polymerase IV [Gluconobacter morbifer G707]
Length = 376
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 104/290 (35%), Positives = 151/290 (52%), Gaps = 19/290 (6%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FGVR+AMP A++LCP+L+FVP F Y S R +F +Y P SLDEAYL
Sbjct: 66 ARPFGVRSAMPSLKAKRLCPDLLFVPPRFDVYRAVSAQIRDIFARYTPLIQPLSLDEAYL 125
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-- 125
D+T+ G S IAE +R + E GLT SAGV+ NR LAK+ SD KP+G F++
Sbjct: 126 DLTDHLGAYG-SATLIAERIREDIRMETGLTASAGVSYNRFLAKLASDYRKPDGLFLITP 184
Query: 126 ---PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHST 182
PN F++ LP+ GIG T +R GI T +++ +
Sbjct: 185 AMGPN-------FVADLPVSSFHGIGPATARRMR-TLGIETGKDLRDVSLAVLTRHFGKA 236
Query: 183 ADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALL---YRKLAEIAEMLSADMQK 239
A F+ + G+ R RKS+ +E+T+ D +L L +IA L + +
Sbjct: 237 ALFYHGISRGIDDRPVVVDRERKSLGTEQTY--LTDLLILSEALEALDQIAAKLWSQSLR 294
Query: 240 EGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV 289
L+ RT+TLK+K A F TRA TL + ++S ++ + +L++ PV
Sbjct: 295 RNLQARTVTLKVKYADFRQITRARTLARPVASEAELREVGQILMRPLFPV 344
>gi|261334859|emb|CBH17853.1| DNA polymerase IV, putative [Trypanosoma brucei gambiense DAL972]
Length = 572
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 103/316 (32%), Positives = 164/316 (51%), Gaps = 18/316 (5%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR GVR +MPGF+A K+CP L+ +P DF Y S+ R++ +YDPN+++ LDE L
Sbjct: 175 ARGRGVRCSMPGFLALKICPNLLILPPDFDSYNEESNTVRRIVAEYDPNYISFGLDELTL 234
Query: 68 DITE-VCRERGISGIE-IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL 125
+++ + R G E +A ELR V+ E LT SAG+ P LAK+ S+INKPNGQ L
Sbjct: 235 EVSAYIERFEGTKTAEDVASELRVRVFGETKLTASAGIGPTAALAKIASNINKPNGQHDL 294
Query: 126 P-NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTAD 184
+ R VMT++ L +R + G+GKVTE +L+ GI T ++ + LC + ++
Sbjct: 295 NLHTREDVMTYVRDLGLRSVPGVGKVTEALLKG-LGITTLGDIHDRRVELCYILHNNLFR 353
Query: 185 FFLSVGLGL-------GSTNT-----PQARFRKSISSERTFSVTEDKALLYRKLAEIAEM 232
F L +G+ + NT RK+ISSER+ + K + + +
Sbjct: 354 FLLGASIGIMQWPDAATAANTENCEGATGEQRKAISSERSITTPRTKEGMQEMVDTVFNG 413
Query: 233 LSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL--KAELPVS 290
+M+K + R ++L+++ AS+ + +L +Y S + + LL A
Sbjct: 414 AYEEMRKSEMMCRRISLRIRWASYRYQQYTKSLIQYSDDSATLRRAVDGLLLPHAAKYSE 473
Query: 291 LRLIGLRVTQFNEDKV 306
+ L+G+R KV
Sbjct: 474 ISLLGVRFLDLISAKV 489
>gi|375136727|ref|YP_004997377.1| DNA polymerase IV, devoid of proofreading, damage-inducible protein
P [Acinetobacter calcoaceticus PHEA-2]
gi|325124172|gb|ADY83695.1| DNA polymerase IV, devoid of proofreading, damage-inducible protein
P [Acinetobacter calcoaceticus PHEA-2]
Length = 351
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 105/300 (35%), Positives = 163/300 (54%), Gaps = 11/300 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG+R+AM ARKLCP+++ + +F KY S +F +Y SLDEAYL
Sbjct: 47 ARKFGLRSAMSMSQARKLCPQVVIIEPNFEKYRTVSAQIHSIFQQYTLLIEPLSLDEAYL 106
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+TE ++ S E+A +R ++ GLT SAGVAPN+ LAK+ SD NKPNG V+
Sbjct: 107 DVTENLKQIA-SATEVAMHIREDIFRLTGLTASAGVAPNKFLAKIASDWNKPNGLCVIKP 165
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQK--GSLLCAVFSHSTADF 185
++A TFI LP++KI G+GKVT+ L+ + ++T + LQK ++L F
Sbjct: 166 SQVA--TFIQDLPLKKIPGVGKVTQEKLQQL-QLHTLGD-LQKIEEAVLVHHFGKYGQQL 221
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
+L G+ R R+ IS E TF A +AE + ++K+ L R
Sbjct: 222 YL-YAQGIDHRPVQAERARQQISKETTFDSDFTLAQCQPYWQGLAEKVWQTLEKKQLNAR 280
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELP--VSLRLIGLRVTQFN 302
+ +KLK +F+ + + ++ I S +D+++ +LL + ++P RLIG+ V Q
Sbjct: 281 GVNIKLKLKNFQTLQHSKSFKRPIQSLQDLIQVLFLLLNEMQIPEHFQFRLIGIGVYQLQ 340
>gi|254493799|ref|ZP_05106970.1| impB/mucB/samB family protein [Neisseria gonorrhoeae 1291]
gi|268594856|ref|ZP_06129023.1| DNA polymerase IV [Neisseria gonorrhoeae 35/02]
gi|268596764|ref|ZP_06130931.1| DNA polymerase IV [Neisseria gonorrhoeae FA19]
gi|268601428|ref|ZP_06135595.1| impB/mucB/samB family protein [Neisseria gonorrhoeae PID18]
gi|268603758|ref|ZP_06137925.1| impB/mucB/samB family protein [Neisseria gonorrhoeae PID1]
gi|268682227|ref|ZP_06149089.1| impB/mucB/samB family protein [Neisseria gonorrhoeae PID332]
gi|291043738|ref|ZP_06569454.1| DNA polymerase IV [Neisseria gonorrhoeae DGI2]
gi|226512839|gb|EEH62184.1| impB/mucB/samB family protein [Neisseria gonorrhoeae 1291]
gi|268548245|gb|EEZ43663.1| DNA polymerase IV [Neisseria gonorrhoeae 35/02]
gi|268550552|gb|EEZ45571.1| DNA polymerase IV [Neisseria gonorrhoeae FA19]
gi|268585559|gb|EEZ50235.1| impB/mucB/samB family protein [Neisseria gonorrhoeae PID18]
gi|268587889|gb|EEZ52565.1| impB/mucB/samB family protein [Neisseria gonorrhoeae PID1]
gi|268622511|gb|EEZ54911.1| impB/mucB/samB family protein [Neisseria gonorrhoeae PID332]
gi|291012201|gb|EFE04190.1| DNA polymerase IV [Neisseria gonorrhoeae DGI2]
Length = 352
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 104/299 (34%), Positives = 162/299 (54%), Gaps = 17/299 (5%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG+ +AM A++LCP+ ++VP F Y S VF +Y S DEAYL
Sbjct: 49 ARQFGLHSAMSVATAKRLCPQAVYVPPHFDLYRQVSAQIHAVFRRYTDLIEPLSPDEAYL 108
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T + +G E+A+E+R +++ E GLT SAG+APN+ LAK+ SD KPNGQFVLP
Sbjct: 109 DVTRNFKNIPYAG-EVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPP 167
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADF 185
+ VM F+ +LP+ KI G GKVT ++ + G+ T ++ ++G LL +H
Sbjct: 168 HK--VMAFLETLPLGKIPGAGKVTLKKMQSL-GMRTAGDLRRFERGELL----NHFGRYG 220
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLR 243
+ L G+ P R+ + ++ ED L L +AE L + ++ +
Sbjct: 221 YRLYDLARGTDEHPVKAERERLQISTEITLPEDLPLGQAAGHLPHLAEDLWRQITRKNVE 280
Query: 244 GRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV----SLRLIGLRV 298
+++TLKLKT F + TR +T + +L+ A +L+ A +P + RLIG+ V
Sbjct: 281 AQSVTLKLKTYDFRIITRTLTYSSVLPDCAALLQAAQMLM-ARVPPQTEDAFRLIGIGV 338
>gi|418520920|ref|ZP_13086967.1| DNA polymerase IV [Xanthomonas axonopodis pv. malvacearum str.
GSPB2388]
gi|410703343|gb|EKQ61837.1| DNA polymerase IV [Xanthomonas axonopodis pv. malvacearum str.
GSPB2388]
Length = 359
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 110/302 (36%), Positives = 163/302 (53%), Gaps = 13/302 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FG+R+AMP A +LCP+ IFVP DF +Y S R++F ++ SLDEAYL
Sbjct: 47 ARIFGIRSAMPAVRAERLCPDAIFVPPDFARYKAVSRQVREIFHRHTDLVEPLSLDEAYL 106
Query: 68 DITEVCRERGIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP 126
D+T + G+ E+A+ +RT + EE LT SAG+APN+ LAK+ SD KP+GQFV+
Sbjct: 107 DVTHA--KTGMQLATEVAQLIRTQIREETQLTASAGIAPNKFLAKIASDWRKPDGQFVIA 164
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFF 186
R V F+ L + +I G+GKV + L GI T ++ Q+ S
Sbjct: 165 PSR--VDAFLLPLKVNRIPGVGKVMDGKL-AALGIVTVADLRQRPLEELQAHFGSFGQSL 221
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRG 244
G+ + +S+SSE TFS ED AL L + +AE ++ G
Sbjct: 222 YRRARGIDERPVEPDQEVQSVSSEDTFS--EDLALDALAPHILRLAEKTWLATRRTERIG 279
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELPVS--LRLIGLRVTQF 301
RT+ LKLKT++F + TR+ T ++ +S E + + A L + ELP RL+G+ + F
Sbjct: 280 RTVVLKLKTSNFRILTRSYTPEQPPTSQEALAQIALALTRRVELPAQTRYRLVGVGLGGF 339
Query: 302 NE 303
++
Sbjct: 340 SD 341
>gi|167644442|ref|YP_001682105.1| DNA-directed DNA polymerase [Caulobacter sp. K31]
gi|167346872|gb|ABZ69607.1| DNA-directed DNA polymerase [Caulobacter sp. K31]
Length = 375
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 102/305 (33%), Positives = 163/305 (53%), Gaps = 17/305 (5%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR+AMP A CP+L+FVP F Y S ++F Y SLDEAYL
Sbjct: 52 ARKFGVRSAMPSTTALAKCPQLVFVPPRFEVYKAVSRQIHEIFADYTDLIEPLSLDEAYL 111
Query: 68 DITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP 126
D+T RG+ + E A+E+R + E GLT SAGV+ N+ LAK+ SD KPNGQFV+P
Sbjct: 112 DVT--ANRRGLETASETAKEIRARILETTGLTASAGVSYNKFLAKLASDQRKPNGQFVVP 169
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFF 186
+ F+ +LPI + G+G VTE ++ + G++T E++ ++ + ++
Sbjct: 170 PGKGE--AFVQTLPIGRFHGVGAVTEAKMKRL-GVHTGEDLHRQSLAFLQQHFGRSGPWY 226
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSAD-----MQKEG 241
++ G R RKS SE TF D+ + + E + AD K G
Sbjct: 227 YAIARGEDDRRVNPDRVRKSSGSETTF----DQDHIAPEPIEAGVLAMADDVWAWCAKTG 282
Query: 242 LRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELP--VSLRLIGLRVT 299
R RT+T+K+K A F+ TR+ + ++ E + + + L+++ P + +RL+G+ ++
Sbjct: 283 DRARTVTVKIKWADFQQATRSRSRPSPVADHETLRQTSLDLIRSVYPPRLGIRLVGVTLS 342
Query: 300 QFNED 304
F ++
Sbjct: 343 NFEQE 347
>gi|71756037|ref|XP_828933.1| DNA polymerase kappa [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|70834319|gb|EAN79821.1| DNA polymerase kappa, putative [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
Length = 571
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 101/307 (32%), Positives = 162/307 (52%), Gaps = 18/307 (5%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR GVR +MPGF+A K+CP L+ +P DF Y S+ R++ +YDPN+++ LDE L
Sbjct: 175 ARGRGVRCSMPGFLALKICPNLLILPPDFDAYNEESNTVRRIVAEYDPNYISFGLDELTL 234
Query: 68 DITE-VCRERGISGIE-IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL 125
+++ + R G E +A ELR V+ + LT SAG+ P LAK+ S+INKPNGQ L
Sbjct: 235 EVSAYIERFEGTKTAEDVASELRVRVFGDTKLTASAGIGPTAALAKIASNINKPNGQHDL 294
Query: 126 P-NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTAD 184
+ R VMT++ L +R + G+GKVTE +L+ GI T ++ + LC + ++
Sbjct: 295 NLHTREDVMTYVRDLGLRSVPGVGKVTEALLKG-LGITTLSDIYNRRVELCYILHNNLFR 353
Query: 185 FFLSVGLGL-------GSTNTPQARF-----RKSISSERTFSVTEDKALLYRKLAEIAEM 232
F L +G+ + NT RK+ISSER+ + K + + +
Sbjct: 354 FLLGASIGIVQWPDAATAANTENCEGATGGQRKAISSERSITTPRTKEGMQEMVDTVFNG 413
Query: 233 LSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL--KAELPVS 290
+M+K L R ++L+++ AS+ + +L +Y S + + LL A
Sbjct: 414 AYEEMRKSELMCRRISLRIRWASYRYQQYTKSLIQYSDDSATLRRAVDGLLLPHAAKYSE 473
Query: 291 LRLIGLR 297
+ L+G+R
Sbjct: 474 ISLLGVR 480
>gi|418297525|ref|ZP_12909366.1| DNA polymerase IV [Agrobacterium tumefaciens CCNWGS0286]
gi|355537711|gb|EHH06966.1| DNA polymerase IV [Agrobacterium tumefaciens CCNWGS0286]
Length = 365
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 104/302 (34%), Positives = 159/302 (52%), Gaps = 9/302 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FGVR+AMP A + CP+LIFV F Y S R++F +Y P SLDEAYL
Sbjct: 55 AREFGVRSAMPSVTAARKCPDLIFVKPRFEVYRAVSQQIREIFAEYTPIIEPLSLDEAYL 114
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-P 126
D+TE ++ I+ +IA E+R + GL SAG++ N+ LAK+ SD+NKPNGQ V+ P
Sbjct: 115 DVTENLKDMPIA-TDIALEIRARIKAVTGLNASAGISYNKFLAKMASDLNKPNGQAVITP 173
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFF 186
+ A F+ L ++K G+G T ++ + GI T ++ K + +F
Sbjct: 174 KNGPA---FVEQLAVKKFHGVGPATAEKMQRL-GIETGTDLKAKSLQFLVEHFGKSGPYF 229
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
+ G+ R RKS+ +E TF+ D L +L +AE + A + +G G+
Sbjct: 230 YGIARGIDDRRVRPDRVRKSVGAEDTFTADISDLDLATSELRPLAEKVWAYCEAKGFSGK 289
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFNE 303
T+T+K+K + F TR+ T S +DI A+ LL P +RL+G+ ++
Sbjct: 290 TVTVKIKYSDFTQATRSRTSALPYSGIKDIFDAANALLAGVYPFKRPVRLLGVTLSSLTN 349
Query: 304 DK 305
+K
Sbjct: 350 EK 351
>gi|293610008|ref|ZP_06692309.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|292827240|gb|EFF85604.1| conserved hypothetical protein [Acinetobacter sp. SH024]
Length = 351
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 105/300 (35%), Positives = 163/300 (54%), Gaps = 11/300 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FG+R+AM ARKLCP+++ + +F KY S +F +Y SLDEAYL
Sbjct: 47 AREFGLRSAMSMSQARKLCPQVVIIEPNFEKYRTVSAQIHSIFQQYTLLIEPLSLDEAYL 106
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+TE ++ S E+A ++R ++ GLT SAGVAPN+ LAK+ SD NKPNG V+
Sbjct: 107 DVTENLKQIA-SATEVAMQIREDIFRLTGLTASAGVAPNKFLAKIASDWNKPNGLCVIKP 165
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQK--GSLLCAVFSHSTADF 185
++A TFI LP++KI G+GKVT+ L+ + ++T + LQK ++L F
Sbjct: 166 SQVA--TFIQDLPLKKIPGVGKVTQEKLQQL-QLHTLGD-LQKIEEAVLVHHFGKYGQQL 221
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
+L G+ R R+ IS E TF A +AE + ++K+ L R
Sbjct: 222 YL-YAQGIDHRPVQAERARQQISKETTFDSDFTLAQCQPYWQGLAEKVWQTLEKKQLNAR 280
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELP--VSLRLIGLRVTQFN 302
+ +KLK +F+ + + ++ I S +D+++ +LL + ++P RLIG+ V Q
Sbjct: 281 GVNIKLKLKNFQTLQHSKSFKRPIQSLQDLIQVLFLLLNEMQIPEHFQFRLIGIGVYQLQ 340
>gi|398808463|ref|ZP_10567326.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Variovorax sp. CF313]
gi|398087495|gb|EJL78081.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Variovorax sp. CF313]
Length = 405
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 101/298 (33%), Positives = 160/298 (53%), Gaps = 11/298 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG+ +AM A KLCP+ I +P DF +Y YS + + + P +DE Y+
Sbjct: 78 ARQFGIGSAMGLMKAAKLCPQAIILPVDFDEYRRYSRAFKNIILEVAPLMEDRGVDEVYI 137
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D T+V + G +A ++T++++ GLTCS GVAPN+L+AK+ S+ NKPNG V+
Sbjct: 138 DFTDVPGGQRDGGRSLARLIQTAIFDATGLTCSIGVAPNKLIAKMASEFNKPNGISVVYE 197
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFF 186
+ T I LP RK+ GIG + L+ FGI T ++ + L A F +T +
Sbjct: 198 HDLE--TRIWPLPCRKVNGIGPKADEKLKR-FGIETVGQLAARDRDWLVATFGKATGAWM 254
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFS----VTEDKALLYRKLAEIAEMLSADMQKEGL 242
V G + S+S E TF D+A L + E L+AD+Q++G
Sbjct: 255 HEVAWGRDNRPVVTESEPVSMSRETTFDRDLHAVRDRAELGAIFTHLCEQLAADLQRKGY 314
Query: 243 RGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRV 298
G+T+ +KL+ F++ TR T++++ S ++ I +H L +P+ LRL+G+RV
Sbjct: 315 VGKTIGIKLRYDDFKIATRDQTIERFTSDAKTI-RHTGGLCLKRVPLERPLRLLGVRV 371
>gi|359398362|ref|ZP_09191383.1| DNA polymerase IV [Novosphingobium pentaromativorans US6-1]
gi|357600274|gb|EHJ61972.1| DNA polymerase IV [Novosphingobium pentaromativorans US6-1]
Length = 401
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 110/308 (35%), Positives = 161/308 (52%), Gaps = 15/308 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR+AMP A + CP LIF F Y S R +F +Y P+ SLDEAYL
Sbjct: 91 ARKFGVRSAMPSARAARQCPGLIFRKPRFEVYREVSQQIRAIFHEYTPHVEPLSLDEAYL 150
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-P 126
D+T + G S IAEE+R + E GLT SAGV+ N+ LAK+ SD NKP+G V+ P
Sbjct: 151 DVTADLKGIG-SATRIAEEIRRRIRTETGLTASAGVSYNKFLAKLASDQNKPDGLCVIRP 209
Query: 127 NDRMAVMTFISSLPIRKIGGIG-KVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADF 185
+ A F++ LP+R+ G+G + E + R GI T ++ + S A++
Sbjct: 210 GEGAA---FVAGLPVRRFHGVGPRGAEKMAR--LGIETGADLRDRDIHFLRQHFGSFAEY 264
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKA---LLYRKLAEIAEMLSADMQKEGL 242
G+ R RKS+ ERTF ED A L + I +++ +++
Sbjct: 265 LYRAARGVDLRQVRANRPRKSVGGERTF--FEDIARADALRETMDSIIDIVWDRIERAEA 322
Query: 243 RGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRVTQ 300
RGRT+TLKL+ A F TRA +L +++ E+ + LL LP +RL+GL ++
Sbjct: 323 RGRTVTLKLRYADFRTITRARSLPHFVTGKEEFGQIGHALLDDLMPLPQPIRLMGLTLSA 382
Query: 301 FNEDKVRA 308
++ A
Sbjct: 383 LEREEAVA 390
>gi|381401525|ref|ZP_09926424.1| DNA polymerase IV [Kingella kingae PYKK081]
gi|380833500|gb|EIC13369.1| DNA polymerase IV [Kingella kingae PYKK081]
Length = 338
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 104/300 (34%), Positives = 160/300 (53%), Gaps = 15/300 (5%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG+R+AMP A++LCP+ +FVP F Y S +F +Y SLDEAYL
Sbjct: 39 ARQFGLRSAMPVATAKRLCPQAVFVPPHFDLYRQMSQQIHMIFQRYTDLIEPISLDEAYL 98
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-P 126
D+T+ ++ + ++A+++R + + GLT SAG+APN+ LAK+ SD KPNGQFV+ P
Sbjct: 99 DVTQNKQQLPYAS-QVAKQIRAEILAQTGLTASAGIAPNKFLAKIASDWRKPNGQFVIQP 157
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADF- 185
++ + F+ LP+ K+ G+GK T ++ G T ++ Q A H F
Sbjct: 158 HE---IEYFLRDLPVGKVWGVGKKTLLKMQQ-HGWQTIGDLRQVSR---AELVHWFGKFG 210
Query: 186 --FLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLR 243
+ G+ R R IS+E T S +K + L +++ L MQ++ ++
Sbjct: 211 YRLYDLARGVDERPVQAERERLQISTEMTLSDNLNKQAISMYLDNLSKDLWQQMQRKKMQ 270
Query: 244 GRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELP-VSLRLIGLRVTQFN 302
TLTLKLK+ F+V TR+ T + E L A++ L A +P RLIGL V+
Sbjct: 271 AYTLTLKLKSTEFQVFTRSQTYSAAL--PEQGLLQAALQLIARMPDGEFRLIGLGVSHLQ 328
>gi|456357588|dbj|BAM92033.1| DNA polymerase IV, devoid of proofreading, damage-inducible protein
P [Agromonas oligotrophica S58]
Length = 357
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 105/307 (34%), Positives = 162/307 (52%), Gaps = 23/307 (7%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFGVR+AMP A++ CP+LIFV F Y S R +F ++ P SLDEAYL
Sbjct: 50 ARRFGVRSAMPSVTAKRQCPDLIFVKPRFEVYKAISQQIRAIFAEHTPIIEPLSLDEAYL 109
Query: 68 DITEVCRERGISGI----EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF 123
D+TE + GI +IA ++R + E L SAG++ N+ LAK+ SD KPNGQ+
Sbjct: 110 DVTE-----NLQGIPLARDIALQIRAKIKAETDLNASAGISYNKFLAKLASDHRKPNGQY 164
Query: 124 VLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTA 183
V+ + A F+ LP+ K GIG T + GI+T ++ +
Sbjct: 165 VISPEMGA--AFVEGLPVGKFHGIGPATTAKF-NALGIHTGLDIRNQTLPFLQQHFGKAG 221
Query: 184 DFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTE---DKALLYRKLAEIAEMLSADMQ 238
++ + G+ R RKS+ +E TFS +TE KA L + ++ A
Sbjct: 222 SYYYWISRGVDDRPVRANRIRKSVGAENTFSTDLTEFEPMKAELLPLIDKVWRHCEATCN 281
Query: 239 KEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGL 296
K GRT+TLK+K A FE+ TR+ ++ + S +D+ + + LL++E+P+ +RL+G+
Sbjct: 282 K----GRTVTLKVKFADFEIMTRSRSVASAVGSRDDLERLSVALLQSEMPLPKPVRLLGV 337
Query: 297 RVTQFNE 303
++ E
Sbjct: 338 SLSSLQE 344
>gi|390444078|ref|ZP_10231861.1| DNA polymerase IV [Nitritalea halalkaliphila LW7]
gi|389665309|gb|EIM76780.1| DNA polymerase IV [Nitritalea halalkaliphila LW7]
Length = 367
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 110/302 (36%), Positives = 166/302 (54%), Gaps = 17/302 (5%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR +GVR+AMPG +A + CP L+FVP F+ Y S +++F + SLDEA+L
Sbjct: 61 ARAYGVRSAMPGKLAIRKCPHLLFVPPRFSVYKEVSQQVQEIFFSFTDFVEPLSLDEAFL 120
Query: 68 DITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQ-FVL 125
D+TE + G S I +A +R +++E GLT SAGV+ N+ LAK SD+ KPNGQ +L
Sbjct: 121 DVTE--NKFGYKSAIYMAYLIRKRIFQETGLTASAGVSYNKFLAKTASDLRKPNGQAVIL 178
Query: 126 PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH--STA 183
P D F+ LP+ K G+GKVT L + FGI + ++ K L + H +
Sbjct: 179 PED---AAEFLERLPVEKFYGVGKVTAAKL-NRFGIYSGADL--KSFSLAFLTKHFGKSG 232
Query: 184 DFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEG 241
+ + G+ + R RKSIS E TF ++ L + L + E L ++K+G
Sbjct: 233 QHYYQIVRGIHDSPVQPDRMRKSISVESTFEQDISARNELDF-ALQRLLEDLKKRLRKQG 291
Query: 242 LRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQ 300
L+GRT LKLK + F +TR+ + + YI E + + LL+ E L +RL+G+ + +
Sbjct: 292 LKGRTAVLKLKYSDFSQQTRSRSQEHYI-PEEALEEFYRALLEQEPLKQPIRLMGVGLQK 350
Query: 301 FN 302
N
Sbjct: 351 LN 352
>gi|386399214|ref|ZP_10083992.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bradyrhizobium sp. WSM1253]
gi|385739840|gb|EIG60036.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bradyrhizobium sp. WSM1253]
Length = 367
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 112/320 (35%), Positives = 171/320 (53%), Gaps = 24/320 (7%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FGVR+AMP A++ CP+LIFV F Y S R +F ++ SLDEAYL
Sbjct: 60 AREFGVRSAMPSVTAKRQCPDLIFVKPRFEVYKAISRQIRDIFAEHTAIIEPLSLDEAYL 119
Query: 68 DITEVCRERGISGI----EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF 123
D+TE + GI +IA ++R + E GL SAG++ N+ LAK+ SD KPNGQF
Sbjct: 120 DVTE-----NLQGIPLARDIALKIRERIKAETGLNASAGISYNKFLAKLASDHRKPNGQF 174
Query: 124 VLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTA 183
V+ + F+ +LP+ K GIG T + + + Q + A F S A
Sbjct: 175 VISPEMGP--AFVETLPVGKFHGIGPATGAKMNALGMFTGLDIRRQTLEFMNANFGKSGA 232
Query: 184 DFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEG 241
++ + G+ R RKSI +E TFS +TE L+ +L + + + + G
Sbjct: 233 -YYYWISRGVDERPVRANRVRKSIGAETTFSSDLTEFDTLVA-ELKPLVDKVWRHCEATG 290
Query: 242 LRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVT 299
RGRT+TLK+K A FE+ TR+ + ++ +D+ + A LL+ E+P+ S+RL+G+ ++
Sbjct: 291 SRGRTVTLKIKFADFEIITRSRSALSPVAGRDDLERLACGLLEGEMPLPKSVRLLGVSLS 350
Query: 300 --QFNEDKVRAPSDPTQKTL 317
Q +D ++P Q TL
Sbjct: 351 SLQAGDD-----AEPPQLTL 365
>gi|212703647|ref|ZP_03311775.1| hypothetical protein DESPIG_01692 [Desulfovibrio piger ATCC 29098]
gi|212672942|gb|EEB33425.1| ImpB/MucB/SamB family protein [Desulfovibrio piger ATCC 29098]
Length = 407
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 116/317 (36%), Positives = 164/317 (51%), Gaps = 18/317 (5%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFGV +AMP A +LCP+ IFV + +Y S + P AS+DEAYL
Sbjct: 54 ARRFGVHSAMPMATAHRLCPQAIFVRGNRRRYAEISGRIMAALQDFSPLVEPASIDEAYL 113
Query: 68 DITEVCRERGISGIE-IAEELRTSVYE-EAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL 125
D T + ER +E + ++ V E GLTCS G AP + LAK+CSDINKP+G ++L
Sbjct: 114 DATGL--ERLFGPVEQLIPAIKARVREVTGGLTCSVGAAPVKFLAKICSDINKPDGIYIL 171
Query: 126 -PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTAD 184
P D V F+ L +R++ G+G+ L + GI E++ + L
Sbjct: 172 RPED---VDGFLGGLDVRRLPGVGRRMVAEL-EALGIRRVEQLRRYSPELLEQRFGKWGR 227
Query: 185 FFLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLR 243
+ G+ KS S+E TF+ T D+ L L AE + A +++ GLR
Sbjct: 228 ELHARARGIDPRPVVPEHEAKSESAETTFARDTRDREFLKTMLLGHAERVGASLRRHGLR 287
Query: 244 GRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFN 302
RT+TLK+K A F TR+ TL + +S+E I + + LL+AE LP +RLIGL V+ F
Sbjct: 288 SRTVTLKIKFADFRQITRSRTLSEATNSTETIYETGTALLEAEALPQPVRLIGLGVSGFG 347
Query: 303 EDKVRAPSDPTQKTLTN 319
S PTQ+ L
Sbjct: 348 -------SAPTQELLPG 357
>gi|374578695|ref|ZP_09651791.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bradyrhizobium sp. WSM471]
gi|374427016|gb|EHR06549.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bradyrhizobium sp. WSM471]
Length = 367
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 112/320 (35%), Positives = 171/320 (53%), Gaps = 24/320 (7%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FGVR+AMP A++ CP+LIFV F Y S R +F ++ P SLDEAYL
Sbjct: 60 AREFGVRSAMPSVTAKRQCPDLIFVKPRFEVYKAISRQIRDIFAEHTPIIEPLSLDEAYL 119
Query: 68 DITEVCRERGISGI----EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF 123
D+T+ + GI +IA ++R + E GL SAGV+ N+ LAK+ SD KPNGQF
Sbjct: 120 DVTQ-----NLQGIPLARDIALKIRERIKAETGLNASAGVSYNKFLAKLASDHRKPNGQF 174
Query: 124 VLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTA 183
V+ + F+ +LP+ K GIG T + + + Q + A F S A
Sbjct: 175 VISPEMGP--AFVETLPVGKFHGIGPATGAKMNALGMFTGLDIRRQTLEFMNANFGKSGA 232
Query: 184 DFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEG 241
++ + G+ R RKSI +E TFS +T+ L+ +L + + + + G
Sbjct: 233 -YYYWISRGVDDRPVRANRVRKSIGAETTFSNDLTQFDTLVA-ELKPLIDKVWRHCEATG 290
Query: 242 LRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVT 299
RGRT+TLK+K A FE+ TR+ + ++ D+ + A LL+ E+P+ S+RL+G+ ++
Sbjct: 291 SRGRTVTLKIKFADFEIITRSRSAVSPVAGRADLERLACGLLEVEMPLPKSVRLLGVSLS 350
Query: 300 --QFNEDKVRAPSDPTQKTL 317
Q +D ++P Q TL
Sbjct: 351 SLQAGDD-----AEPPQLTL 365
>gi|71756033|ref|XP_828931.1| DNA polymerase kappa [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|70834317|gb|EAN79819.1| DNA polymerase kappa, putative [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
Length = 570
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 98/291 (33%), Positives = 156/291 (53%), Gaps = 16/291 (5%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR GVR MPGF+A K+CP L+ +P D Y S++ R++ +YDPN++ LD+ L
Sbjct: 174 ARGRGVRPGMPGFLALKICPNLLLLPPDDDSYYLESNIVRRIVAEYDPNYIVVGLDDFTL 233
Query: 68 DITE-VCRERGISGIE-IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL 125
+++ + R G E +A ELR V+ E LT SAG+ P LAK+ S+INKPNGQ L
Sbjct: 234 EVSAYIERFEGTKTAEDVASELRVRVFGETKLTASAGIGPTAALAKIASNINKPNGQHDL 293
Query: 126 P-NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTAD 184
+ R VMT++ L +R + G+GKVTE +L+ + GI T ++ + LC + ++
Sbjct: 294 NLHTRGDVMTYVRDLGLRSVPGVGKVTEALLKGL-GITTLGDIHDRRVELCYILHNNLFR 352
Query: 185 FFLSVGLGL-------GSTNTPQARF-----RKSISSERTFSVTEDKALLYRKLAEIAEM 232
F L +G+ + NT RK+ISSER+F V K L+ + I E
Sbjct: 353 FLLGASIGIMQWPDAATAANTENCEGATGGQRKAISSERSFYVLHSKEQLHEMIYSIFEE 412
Query: 233 LSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL 283
+M++ + R ++L ++ +S+ + +L +Y S + + LL
Sbjct: 413 AYEEMRQNEMLCRQISLLVRWSSYRYQQYTKSLIQYSDDSATLRRAVDGLL 463
>gi|254670271|emb|CBA05549.1| DNA polymerase IV [Neisseria meningitidis alpha153]
Length = 400
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 104/299 (34%), Positives = 163/299 (54%), Gaps = 17/299 (5%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG+ +AM A++LCP+ ++VP F Y S VF +Y SLDEAYL
Sbjct: 97 ARQFGLHSAMSVATAKRLCPQAVYVPPHFDLYRQVSAQIHAVFRRYTDLIEPLSLDEAYL 156
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T + + E+A+E+R +++ E GLT SAG+APN+ LAK+ SD KPNGQFVLP
Sbjct: 157 DVTRNFKNIPYAS-EVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPP 215
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADF 185
+ VM F+ +LP+ KI G+GKVT ++ + G+ T ++ ++G LL +H
Sbjct: 216 HK--VMAFLETLPLGKIPGVGKVTLKKMQSL-GMRTAGDLRRFERGELL----NHFGRYG 268
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLR 243
+ L G+ P R+ + ++ ED L L +AE L + ++ +
Sbjct: 269 YRLYDLVRGTDERPVKAERERLQISTEITLPEDLPLEQAAGHLPHLAEDLWRQITRKNVE 328
Query: 244 GRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV----SLRLIGLRV 298
+++TLKLKT F + TR +T + +L+ A +L+ A +P + RLIG+ V
Sbjct: 329 AQSVTLKLKTYDFRIITRTLTYSSVLPDCAALLQAAQMLM-ARVPPQTEDAFRLIGIGV 386
>gi|381170537|ref|ZP_09879693.1| ImpB/MucB/SamB family protein [Xanthomonas citri pv.
mangiferaeindicae LMG 941]
gi|380688994|emb|CCG36180.1| ImpB/MucB/SamB family protein [Xanthomonas citri pv.
mangiferaeindicae LMG 941]
Length = 359
Score = 156 bits (395), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 110/302 (36%), Positives = 163/302 (53%), Gaps = 13/302 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FG+R+AMP A +LCP+ IFVP DF +Y S R++F ++ SLDEAYL
Sbjct: 47 ARIFGIRSAMPAVRAERLCPDAIFVPPDFARYKAVSRQVREIFHRHTDLVEPLSLDEAYL 106
Query: 68 DITEVCRERGIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP 126
D+T + G+ E+A+ +RT + EE LT SAG+APN+ LAK+ SD KP+GQFV+
Sbjct: 107 DVTHA--KTGMQLATEVAQLIRTQIREEIQLTASAGIAPNKFLAKIASDWRKPDGQFVIA 164
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFF 186
R V F+ L + +I G+GKV + L GI T ++ Q+ S
Sbjct: 165 PSR--VDAFLLPLKVNRIPGVGKVMDGKL-AALGIVTVADLRQRPLEELQAHFGSFGQSL 221
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRG 244
G+ + +S+SSE TFS ED AL L + +AE ++ G
Sbjct: 222 YRRARGIDERPVEPDQEVQSVSSEDTFS--EDLALDALAPHILRLAEKTWLATRRTERIG 279
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELPVS--LRLIGLRVTQF 301
RT+ LKLKT++F + TR+ T ++ +S E + + A L + ELP RL+G+ + F
Sbjct: 280 RTVVLKLKTSNFRILTRSYTPEQPPTSQEALAQIALALTRRVELPAQTRYRLVGVGLGGF 339
Query: 302 NE 303
++
Sbjct: 340 SD 341
>gi|359797341|ref|ZP_09299927.1| DNA polymerase IV [Achromobacter arsenitoxydans SY8]
gi|359364842|gb|EHK66553.1| DNA polymerase IV [Achromobacter arsenitoxydans SY8]
Length = 365
Score = 156 bits (395), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 96/258 (37%), Positives = 140/258 (54%), Gaps = 6/258 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFG+ +AM A +LCP I+VP DF +Y S R++F ++ SLDEAYL
Sbjct: 56 ARRFGIHSAMSAIKAERLCPHAIYVPPDFNRYRDVSRQVRQIFARHTDLIEPLSLDEAYL 115
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-P 126
D+T V + S E+A+ +R + EE GLT SAGVAPN+ LAK+ SD NKP+G FV+ P
Sbjct: 116 DVT-VNKCGLPSATEVAQVIRQQIREETGLTASAGVAPNKFLAKIASDWNKPDGLFVVRP 174
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFF 186
N V+ F+ LP+RK+ G+GKVT+ L + GI T ++ + +
Sbjct: 175 NK---VLAFLEPLPVRKVPGVGKVTQARL-EQLGIQTVGDLATHSAQELEHYFGRYGRRL 230
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRT 246
+ G+ + + +S+E TFS + + +AE + K+G GRT
Sbjct: 231 YELARGIDEREVQPDQPLQQVSAETTFSRDVRLDAVGEAIDRMAEKVWDQALKKGALGRT 290
Query: 247 LTLKLKTASFEVRTRAVT 264
+ LKLKT F + TR+ T
Sbjct: 291 VVLKLKTDRFRILTRSQT 308
>gi|403412384|emb|CCL99084.1| predicted protein [Fibroporia radiculosa]
Length = 310
Score = 156 bits (394), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 71/151 (47%), Positives = 100/151 (66%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++GVR+ M GFIA+KLCP LI V F +Y S +F +YDPN AAS DE Y+
Sbjct: 143 ARKYGVRSGMAGFIAKKLCPHLILVGNHFDRYLEMSRRVMDIFRRYDPNMCAASCDEGYI 202
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
+IT C + ++ E +++R +V +E LT SAG+APN++LAK+CSD NKPNGQF L +
Sbjct: 203 NITAYCEDHQLTAEECVQQMREAVQKETRLTVSAGIAPNKMLAKICSDKNKPNGQFKLES 262
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDV 158
D + F+ L IRK+ G+G+V E +L +
Sbjct: 263 DPATIKEFMHDLSIRKLPGVGRVNERLLESI 293
>gi|259046578|ref|ZP_05736979.1| DNA-directed DNA polymerase [Granulicatella adiacens ATCC 49175]
gi|259036743|gb|EEW37998.1| DNA-directed DNA polymerase [Granulicatella adiacens ATCC 49175]
Length = 352
Score = 156 bits (394), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 112/306 (36%), Positives = 168/306 (54%), Gaps = 15/306 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FGVR+AMP A KLCP+ I P +++ Y S R+VF + S+DEAYL
Sbjct: 48 ARAFGVRSAMPTAKAMKLCPKAILTPGNYSLYKEISSQVREVFKSFTNMIEPLSIDEAYL 107
Query: 68 DITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP 126
D+T RGI S +A ++ VYE+ GLTCS GV+ N+ LAK+ S KP+G V+
Sbjct: 108 DVTN--NSRGIASATLVAHLIQKEVYEKTGLTCSVGVSFNKFLAKMASGYQKPSGITVIT 165
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHSTADF 185
+ FI ++PI G+GKV+ LR GI T E++L + L + F +
Sbjct: 166 PEN--AQEFIRTIPIGDFYGVGKVSAEKLRRA-GIETGEDLLHLSKAELESRFGNLGPRL 222
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTF-SVTEDKALLYRKLAEIAEMLSADMQKEGLRG 244
+ V G+ + R RKS+ SERT T D +L L + + +++ +QK L
Sbjct: 223 YAQVR-GISNDQLTLYRERKSMGSERTLIKDTTDHGILSEYLEKFSLEIASMLQKRALAS 281
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKA---ELPVSLRLIGLRVTQF 301
RT++LKL+ ++F +++VTL+ Y + E+IL+ A L + E P+ RLIGL V+
Sbjct: 282 RTISLKLRDSNFNTTSKSVTLRDYFNKKEEILQLALQLFEEMMDEKPI--RLIGLSVSHL 339
Query: 302 NE-DKV 306
+ DK+
Sbjct: 340 EKTDKI 345
>gi|421595932|ref|ZP_16039866.1| DNA polymerase IV, partial [Bradyrhizobium sp. CCGE-LA001]
gi|404271960|gb|EJZ35706.1| DNA polymerase IV, partial [Bradyrhizobium sp. CCGE-LA001]
Length = 393
Score = 156 bits (394), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 107/303 (35%), Positives = 164/303 (54%), Gaps = 17/303 (5%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR+AMP A++ CP+LIFV F Y S R +F ++ SLDEAYL
Sbjct: 87 ARKFGVRSAMPSVTAKRQCPDLIFVKPRFEVYKAISRQIRDIFAEHTDIIEPLSLDEAYL 146
Query: 68 DITEVCRERGISGI----EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF 123
D+TE + GI +IA ++R V E GL SAG++ N+ LAK+ SD KPNGQF
Sbjct: 147 DVTE-----NLQGIPLARDIALKIREKVRAETGLNASAGISYNKFLAKLASDHRKPNGQF 201
Query: 124 VLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEML-QKGSLLCAVFSHST 182
V+ + F+ LP+ K GIG T + + G+ T ++ Q + + A F S
Sbjct: 202 VISPEMGP--AFVEMLPVGKFHGIGPATAAKM-NALGLFTGLDIRNQTLAFMNANFGKSG 258
Query: 183 ADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKA-LLYRKLAEIAEMLSADMQKEG 241
A ++ + G+ R RKSI +E TFS D L +L + + + + G
Sbjct: 259 A-YYYWISRGVDERPVRANRIRKSIGAENTFSTDLDAYDALAAELRPLVDKVWRHCEATG 317
Query: 242 LRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS--LRLIGLRVT 299
RGRT+TLK+K A FE+ TR+ ++ ++ +D+ + A LL+ E+P+ +RL+G+ ++
Sbjct: 318 NRGRTVTLKIKFADFEIITRSRSIPAPVARRDDLERLACGLLEIEMPLPKRVRLLGVSLS 377
Query: 300 QFN 302
Sbjct: 378 ALQ 380
>gi|152979982|ref|YP_001355275.1| DNA-damage-inducible protein p [Janthinobacterium sp. Marseille]
gi|151280059|gb|ABR88469.1| DNA-damage-inducible protein p [Janthinobacterium sp. Marseille]
Length = 401
Score = 156 bits (394), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 106/313 (33%), Positives = 155/313 (49%), Gaps = 15/313 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR GV +AM A KL P+ I +P DF Y +YS L ++ P+ +DE Y+
Sbjct: 88 ARALGVFSAMGIMKAAKLAPDAILLPVDFDAYRHYSRLFKQAVADIAPHIENRGIDEIYI 147
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D++E E +A ++ +V + GL+CS G+APN+LLAK+CSD+ KPNG +L
Sbjct: 148 DLSEHAEETH----ALASRIKNAVQQATGLSCSIGIAPNKLLAKICSDLEKPNGLTILTQ 203
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEML-QKGSLLCAVFSHSTADFF 186
+A T I LP RKI GIG L G+NT EE+ +LL F S AD+
Sbjct: 204 ADIA--TRIWPLPARKINGIGPRAAEKL-TALGLNTIEELAGADATLLHEHFGRSYADWL 260
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFS----VTEDKALLYRKLAEIAEMLSADMQKEGL 242
V G+ KS+S E TF D+ L + E ++ D++++G
Sbjct: 261 GRVAQGIDERPVVTYSEPKSVSRETTFENNLHAKRDREALGGIFTRLCERVAGDLERKGY 320
Query: 243 RGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQ 300
GRT+ +KL+ A F + TR +TL Y + I + A LK +P+ RL+G+R+
Sbjct: 321 VGRTVGIKLRFADFRIVTRDLTLPAYTDDAVAIRQAAGECLK-RIPLDQPFRLLGVRIGT 379
Query: 301 FNEDKVRAPSDPT 313
DP
Sbjct: 380 LARKDSLPAEDPV 392
>gi|149185736|ref|ZP_01864052.1| DNA polymerase IV [Erythrobacter sp. SD-21]
gi|148830956|gb|EDL49391.1| DNA polymerase IV [Erythrobacter sp. SD-21]
Length = 370
Score = 156 bits (394), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 108/303 (35%), Positives = 162/303 (53%), Gaps = 11/303 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGV++AMP A++LCP+LIFV + F Y S R +F + SLDEAYL
Sbjct: 61 ARKFGVKSAMPSVTAKRLCPDLIFVKSRFDAYREVSQQIRAIFRHHTDLVEPLSLDEAYL 120
Query: 68 DITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP 126
D+TE + GI S IAE +R + + LT SAGV+ N+ LAK+ SD NKP+G V+
Sbjct: 121 DVTE--DKLGIGSATRIAELIRQEIRAKTRLTASAGVSYNKFLAKLASDQNKPDGMCVIR 178
Query: 127 NDRMAVMTFISSLPIRKIGGIG-KVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADF 185
A F+ SLP+R+ G+G K E + D GI T E+ K S AD+
Sbjct: 179 PGEGA--DFVQSLPVRRFHGVGPKGAEKM--DRLGIQTGAELAAKDIEWLRAHFGSFADY 234
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRG 244
G+ +R RKS+ ERTFS + L L +I +++ +++ +G
Sbjct: 235 LYRAARGIDLRPVRSSRIRKSVGGERTFSRDLSSGSELRETLEDIIDIVWGYIERAEAKG 294
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKA--ELPVSLRLIGLRVTQFN 302
RT+TLK+K F++ +RA T+ + I+ + LL+ LP+ +RL+GL +++
Sbjct: 295 RTVTLKMKYIDFQIFSRAKTVDQPITDRAQFEALSRQLLEEVLPLPMPIRLMGLTLSKLE 354
Query: 303 EDK 305
K
Sbjct: 355 GGK 357
>gi|261334853|emb|CBH17847.1| DNA polymerase IV, putative [Trypanosoma brucei gambiense DAL972]
Length = 571
Score = 156 bits (394), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 99/314 (31%), Positives = 165/314 (52%), Gaps = 24/314 (7%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR G+R MPGF+A K+CP L+ +P DF Y S++ R++ +YDPN+++ LD+ L
Sbjct: 175 ARGRGIRQGMPGFLALKICPNLLILPPDFDAYNEESNIVRRIVAEYDPNYISFGLDDFTL 234
Query: 68 DITE-VCRERGISGIE-IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL 125
+++ + R G E +A ELR V+ E LT SAG+ P LAK+ S+INKPNGQ L
Sbjct: 235 EVSAYIERFEGTKTAEDVASELRVRVFGETKLTASAGIGPTAALAKIASNINKPNGQHDL 294
Query: 126 P-NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTAD 184
+ R VMT++ L +R + G+GKVTE +L+ GI T ++ + LC + ++
Sbjct: 295 NLHTRQDVMTYVRDLGLRSVPGVGKVTEALLKG-LGITTLSDIYDRRVELCYILHNNLFR 353
Query: 185 FFLSVGLGL-------GSTNT-----PQARFRKSISSERTFSVTEDKALLYRKLAEIAEM 232
F L +G+ + NT RK+ISSER+ + K + + +
Sbjct: 354 FLLGASIGIMQWPDAATAANTENCEGATGEQRKAISSERSITTPRTKEGMQEMVDTVFNG 413
Query: 233 LSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLR 292
+M+K + R ++L ++ AS+ + +L +Y S + + L+ LP + +
Sbjct: 414 AYEEMRKSEIMCRRISLTIRWASYRYQQYTKSLIQYSDDSATLRRAVDELM---LPHAAK 470
Query: 293 -----LIGLRVTQF 301
L+G+R++
Sbjct: 471 YSEMCLLGVRLSDL 484
>gi|350572217|ref|ZP_08940522.1| DNA-directed DNA polymerase IV [Neisseria wadsworthii 9715]
gi|349790473|gb|EGZ44382.1| DNA-directed DNA polymerase IV [Neisseria wadsworthii 9715]
Length = 383
Score = 156 bits (394), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 106/304 (34%), Positives = 167/304 (54%), Gaps = 15/304 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFG+ +AM A++LCP+ +++P +F Y S VF ++ SLDEAYL
Sbjct: 80 ARRFGLHSAMSVASAQRLCPQAVYIPPNFPLYREISQQVHAVFRQHTDLIEPLSLDEAYL 139
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T + + ++A+ +R ++ + GLT SAGVAPN+ LAK+ SD KPNGQFVLP
Sbjct: 140 DVTRNFQNIPYAS-QVAKTIRAEIFRQTGLTASAGVAPNKFLAKIASDWRKPNGQFVLPP 198
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEML--QKGSLLCAVFSHSTADF 185
+++A F+ +LP KI G+GKVT ++ + GI+T ++L ++G L +F
Sbjct: 199 EKVA--EFLHTLPPEKIPGVGKVTRLKMQSL-GIDTVGDLLRFERGE-LANLFGKWGYRL 254
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLR 243
+ + G+ + +R R IS+E T + ED L + L +A+ L ++
Sbjct: 255 Y-ELARGIDNRAVKPSRERVQISTEIT--LPEDLPLNQILLHLPHLADDLWQQAARKKAA 311
Query: 244 GRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHA---SVLLKAELPVSLRLIGLRVTQ 300
R++TLKLKTA F + TR+ T + + +L+ A S L L + RLIGL V+
Sbjct: 312 FRSVTLKLKTADFRIITRSQTFSSPLPDAASLLQAAHQISTRLPHTLHATYRLIGLGVSH 371
Query: 301 FNED 304
+
Sbjct: 372 LEPN 375
>gi|365899200|ref|ZP_09437117.1| DNA polymerase IV, devoid of proofreading, damage-inducible protein
P [Bradyrhizobium sp. STM 3843]
gi|365420001|emb|CCE09659.1| DNA polymerase IV, devoid of proofreading, damage-inducible protein
P [Bradyrhizobium sp. STM 3843]
Length = 367
Score = 156 bits (394), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 108/302 (35%), Positives = 166/302 (54%), Gaps = 11/302 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FGVR+AMP A++ CP+LIFV F Y S R +F ++ SLDEAYL
Sbjct: 61 ARAFGVRSAMPSVTAKRKCPDLIFVRPRFEVYKAISREIRDIFAEHTAIIEPLSLDEAYL 120
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+TE + ++ +IA +R + E LT SAG++ N+ LAK+ SD KPNGQFV+
Sbjct: 121 DVTENLQHIPVA-TDIATAIRAKILRETCLTASAGISYNKFLAKLASDHRKPNGQFVI-T 178
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEML-QKGSLLCAVFSHSTADFF 186
+M F+ LP+ K GIG T + + GI T +M Q + A F + A ++
Sbjct: 179 PKMGP-AFVEELPVGKFHGIGPATNAKM-NRLGIFTGMDMRNQTLEFMNAHFGKAGA-YY 235
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRG 244
+ G+ R RKS+ +E TFS +TE AL+ +L + + + + G G
Sbjct: 236 YWISRGVDERPVRANRIRKSVGAENTFSGDLTEFAALVA-ELDPLVDKIWGHCESTGNFG 294
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFN 302
RT+TLK+K + FE+ TR+ +L ISS +D+ + LL++E+P +RL+G+ ++
Sbjct: 295 RTVTLKVKFSDFEIITRSRSLASAISSRQDLGRLTIGLLESEMPTPKPVRLLGVSLSSLQ 354
Query: 303 ED 304
+
Sbjct: 355 SE 356
>gi|94497839|ref|ZP_01304405.1| DNA-directed DNA polymerase [Sphingomonas sp. SKA58]
gi|94422728|gb|EAT07763.1| DNA-directed DNA polymerase [Sphingomonas sp. SKA58]
Length = 360
Score = 156 bits (394), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 110/302 (36%), Positives = 164/302 (54%), Gaps = 11/302 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FGVR+AMPG AR+LCP+L+FV F Y S R++F ++ SLDEAYL
Sbjct: 52 ARTFGVRSAMPGARARRLCPDLLFVKPRFEVYRAVSVQIREIFARFTDMIQPLSLDEAYL 111
Query: 68 DITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL- 125
D+T + GI S +A+E+R + E GLT SAGV+ N+L+AK+ SD NKP+G V+
Sbjct: 112 DVT--VNKPGIASATRVAQEIRRMIRAETGLTASAGVSYNKLIAKLASDQNKPDGICVVR 169
Query: 126 PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADF 185
P + A FI+++P+R+I G+G VT ++ GI T ++ + S ADF
Sbjct: 170 PAEGAA---FIAAMPVRRIHGVGPVTARRMQ-ALGIETGADLRARDLPFLQAHFGSAADF 225
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERT-FSVTEDKALLYRKLAEIAEMLSADMQKEGLRG 244
+ G + + RKS+S E T F D+ L +L I+ L ++K G
Sbjct: 226 YYRAARGEDDRPVRERQSRKSVSVEDTFFGDLTDRDALVTELDRISASLWTRIEKAQAWG 285
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHA--SVLLKAELPVSLRLIGLRVTQFN 302
RT+ LK+K A F + TR+ + + S+E + + +L + LP+ RL+GL V
Sbjct: 286 RTVVLKVKFADFRIITRSRSFASPVRSAEQLAQAGRELLLAQLPLPLGARLLGLGVHNLE 345
Query: 303 ED 304
D
Sbjct: 346 GD 347
>gi|317154691|ref|YP_004122739.1| DNA-directed DNA polymerase [Desulfovibrio aespoeensis Aspo-2]
gi|316944942|gb|ADU63993.1| DNA-directed DNA polymerase [Desulfovibrio aespoeensis Aspo-2]
Length = 392
Score = 156 bits (394), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 113/301 (37%), Positives = 169/301 (56%), Gaps = 14/301 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++GVR+AM ARKLCP+L+ V +Y S+ ++ P AS+DEAYL
Sbjct: 48 ARKWGVRSAMSVVKARKLCPDLLLVSGRMGRYKEISNQVMAALHEFSPTVEQASVDEAYL 107
Query: 68 DITEVCRERGISGI-EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL- 125
D T + ER I ++A +++T V E GLTCS G AP R LAK+ SD+NKP+G F+L
Sbjct: 108 DGTGL--ERLFGPIDQVARQIKTRVREVTGLTCSVGAAPVRFLAKIASDVNKPDGMFILR 165
Query: 126 PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCA--VFSHSTA 183
P D V F+ +LP+ +I G+G LR + G TC ++L + V + A
Sbjct: 166 PED---VAGFLRTLPVGRIPGVGAKLAETLRHM-GARTCGDILGRPRSYWEQRVGKYGGA 221
Query: 184 DFFLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGL 242
+ G+ ST TP + KS S+E TF T D+ +L R L +E + +D++ G
Sbjct: 222 LHDRAGGID-PSTVTPTSEA-KSCSAENTFHEDTTDREVLNRWLLAQSERVGSDLRGHGY 279
Query: 243 RGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELPVSLRLIGLRVTQF 301
+GRT+TLK+K A F TR+ +L ++ I + A LL + +L ++RLIG+ V+ F
Sbjct: 280 KGRTVTLKVKFADFTQITRSRSLDARTDNTALICETARDLLGQLDLRRAVRLIGVGVSNF 339
Query: 302 N 302
+
Sbjct: 340 S 340
>gi|285019488|ref|YP_003377199.1| DNA polymerase iv protein [Xanthomonas albilineans GPE PC73]
gi|283474706|emb|CBA17205.1| probable dna polymerase iv protein [Xanthomonas albilineans GPE
PC73]
Length = 353
Score = 156 bits (394), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 116/311 (37%), Positives = 166/311 (53%), Gaps = 31/311 (9%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FGVR+AMP A +LCP+ IFVP DF +Y S R +F ++ SLDEAYL
Sbjct: 47 ARVFGVRSAMPALRAERLCPDAIFVPPDFARYKAVSRQVRAIFQRHTDLIEPLSLDEAYL 106
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T V + + EIA+ +R + EE LT SAG+APN+ LAK+ SD KP+GQ V+
Sbjct: 107 DVT-VPKGGPAAATEIAQTIRAQIREETALTASAGIAPNKFLAKIASDWRKPDGQCVIHP 165
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADF-- 185
R V F++ LP+ K+ G+GKV + L GI T ++ C S A+
Sbjct: 166 HR--VEAFLTPLPVNKVPGVGKVMQSKL-AALGIVTVGDLRD-----C-----SEAELEA 212
Query: 186 -FLSVGL-------GLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSA 235
F S GL G+ + +SISSE TF+ ED AL L + +AE
Sbjct: 213 RFGSFGLRLYQRARGIDERPVESDQPVQSISSEDTFA--EDLALEALEPAIRRLAEKTWD 270
Query: 236 DMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL-LKAELPVS--LR 292
++ RT+ LKLKTA F + TR+ T ++ S + ++ A L + +LP S R
Sbjct: 271 ATRRTDRVARTVVLKLKTAQFRILTRSFTPERPPESLQTLIDIALALRQRVDLPASTRYR 330
Query: 293 LIGLRVTQFNE 303
L+G+ ++ F+E
Sbjct: 331 LVGVGLSGFHE 341
>gi|162146654|ref|YP_001601113.1| DNA polymerase IV [Gluconacetobacter diazotrophicus PAl 5]
gi|209543354|ref|YP_002275583.1| DNA-directed DNA polymerase [Gluconacetobacter diazotrophicus PAl
5]
gi|161785229|emb|CAP54775.1| putative DNA polymerase IV [Gluconacetobacter diazotrophicus PAl 5]
gi|209531031|gb|ACI50968.1| DNA-directed DNA polymerase [Gluconacetobacter diazotrophicus PAl
5]
Length = 381
Score = 156 bits (394), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 104/298 (34%), Positives = 155/298 (52%), Gaps = 7/298 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARR+GVR+AMP AR+ CP+LIFVP F Y S +F +Y SLDEAYL
Sbjct: 65 ARRYGVRSAMPSVTARRKCPDLIFVPPRFDVYRAVSAQIHAIFARYTGLIQPLSLDEAYL 124
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T+ +R S IA+++R ++ E GLT SAGV+ N+ LAK+ SD KP+G +V+
Sbjct: 125 DVTDPLIDR-PSATAIAQDIRAAIRAETGLTASAGVSYNKFLAKLASDYRKPDGLYVI-T 182
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
RM F+ SLP+ GIG T +R GI T ++ A A F+
Sbjct: 183 PRMGP-RFVESLPVEAFHGIGPATAARMR-AMGIRTGLDLRAHDMDSLARHFGKAAAFYY 240
Query: 188 SVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRT 246
+ G R RKS+ +ERTF D A L + + + + +K GL RT
Sbjct: 241 GIARGRDDRPVEADRRRKSVGTERTFEHDIHDWAEALSALDGMVDRVWGECRKRGLVART 300
Query: 247 LTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFN 302
+T+K+K A F+ RA +L + +++ + A LL+ P +RL+G+ ++ +
Sbjct: 301 VTVKVKYADFQQTGRARSLPQPLAAHAVFRQVACDLLRPFFPPERGIRLLGVTLSNLD 358
>gi|440224781|ref|YP_007338177.1| DNA polymerase IV (Pol IV) [Rhizobium tropici CIAT 899]
gi|440043653|gb|AGB75631.1| DNA polymerase IV (Pol IV) [Rhizobium tropici CIAT 899]
Length = 371
Score = 156 bits (394), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 104/310 (33%), Positives = 162/310 (52%), Gaps = 10/310 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FGV +AMP A++ CP LIFVP F Y S R++F +Y SLDEAYL
Sbjct: 61 ARAFGVHSAMPSVTAKRKCPNLIFVPPRFDVYRAVSQQIREIFAEYTSMIEPLSLDEAYL 120
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-P 126
D+T+ + I+ EIA E+RT + + GL SAG++ N+ LAK+ SD+NKPNGQ V+ P
Sbjct: 121 DVTQNHKGMEIA-TEIALEIRTRIKQVTGLNASAGISYNKFLAKMASDLNKPNGQAVITP 179
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFF 186
+ A F+ +LP++K G+G T + +GI T ++ K +F
Sbjct: 180 KNGPA---FVETLPVKKFHGVGPATAERMHK-YGIETGLDLKSKSLAFLQEHFGKAGPYF 235
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTF-SVTEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
+ G+ R RKSI +E TF +D L +L +A+ + + G +
Sbjct: 236 YGIARGIDERQVKPDRIRKSIGAEDTFVEDIDDLELATAELRPLAQKVWRYCETGGFSAK 295
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS--LRLIGLRVTQF-N 302
T+T+K+K + F TR+ T ++ + +L+ A+ LL P + +RL+G+ ++ N
Sbjct: 296 TVTVKIKYSDFTQATRSRTSSLPVADAGAVLETAAALLATVHPFARPIRLLGITLSSLTN 355
Query: 303 EDKVRAPSDP 312
E+ S P
Sbjct: 356 EEADDGRSQP 365
>gi|421565721|ref|ZP_16011491.1| DNA polymerase IV [Neisseria meningitidis NM3081]
gi|402343298|gb|EJU78447.1| DNA polymerase IV [Neisseria meningitidis NM3081]
Length = 352
Score = 156 bits (394), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 104/299 (34%), Positives = 162/299 (54%), Gaps = 17/299 (5%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG+ +AM A++LCP+ ++VP F Y S VF +Y SLDEAYL
Sbjct: 49 ARQFGLHSAMSVATAKRLCPQAVYVPPHFDLYRQVSAQIHAVFRRYTDLIEPLSLDEAYL 108
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T + + E+A+E+R +++ E GLT SAG+APN+ LAK+ SD KPNGQFVLP
Sbjct: 109 DVTRNFKNIPYAS-EVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPP 167
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADF 185
+ VM F+ +LP+ KI G+GKVT ++ + G+ T ++ +G LL +H
Sbjct: 168 YK--VMAFLETLPLGKIPGVGKVTLKKMQSL-GMQTAGDLRRFDRGELL----NHFGRYG 220
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLR 243
+ L G+ P R+ + ++ ED L L +AE L + ++ +
Sbjct: 221 YRLYDLVRGTDERPVKAERERLQISTEITLPEDLPLEQAAGHLPHLAEDLWRQITRKNVE 280
Query: 244 GRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV----SLRLIGLRV 298
+++TLKLKT F + TR +T + +L+ A +L+ A +P + RLIG+ V
Sbjct: 281 AQSVTLKLKTYDFRIITRTLTYSSVLPDCAALLQAAQMLM-ARVPPQTEDAFRLIGIGV 338
>gi|427426239|ref|ZP_18916302.1| putative DNA polymerase IV [Acinetobacter baumannii WC-136]
gi|425696945|gb|EKU66638.1| putative DNA polymerase IV [Acinetobacter baumannii WC-136]
Length = 351
Score = 156 bits (394), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 105/300 (35%), Positives = 162/300 (54%), Gaps = 11/300 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FG+R+AM ARKLCP+++ + +F KY S +F +Y SLDEAYL
Sbjct: 47 AREFGLRSAMSMSQARKLCPQVVIIEPNFEKYRTVSAQIHSIFQQYTLLIEPLSLDEAYL 106
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+TE ++ S E+A +R ++ GLT SAGVAPN+ LAK+ SD NKPNG V+
Sbjct: 107 DVTENLKQIA-SATEVAMHIREDIFRLTGLTASAGVAPNKFLAKIASDWNKPNGLCVIKP 165
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQK--GSLLCAVFSHSTADF 185
++A TFI LP++KI G+GKVT+ L+ + ++T + LQK ++L F
Sbjct: 166 SQVA--TFIQDLPLKKIPGVGKVTQEKLQQL-QLHTLGD-LQKIEEAVLVHHFGKYGQQL 221
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
+L G+ R R+ IS E TF A +AE + ++K+ L R
Sbjct: 222 YL-YAQGIDHRPVQAERARQQISKETTFDSDFTLAQCQPYWQGLAEKVWQTLEKKQLNAR 280
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELP--VSLRLIGLRVTQFN 302
+ +KLK +F+ + + ++ I S +D+++ +LL + ++P RLIG+ V Q
Sbjct: 281 GVNIKLKLKNFQTLQHSKSFKRPIQSLQDLIQVLFLLLNEMQIPEHFQFRLIGIGVYQLQ 340
>gi|339017671|ref|ZP_08643821.1| DNA polymerase IV [Acetobacter tropicalis NBRC 101654]
gi|338753217|dbj|GAA07125.1| DNA polymerase IV [Acetobacter tropicalis NBRC 101654]
Length = 367
Score = 156 bits (394), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 102/272 (37%), Positives = 143/272 (52%), Gaps = 11/272 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FGVR+AMP +A++ CP L+FVP F Y S+ +F +Y SLDEAYL
Sbjct: 51 ARTFGVRSAMPSVVAKRKCPNLVFVPPRFEVYRAVSNQIHAIFARYTALIQPLSLDEAYL 110
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T+ R + I IA+E+R ++ E GLT SAG++ N+ LAK+ SD KPNGQFV+P
Sbjct: 111 DVTQPLLPRPYATI-IAQEIRAAILAETGLTASAGISYNKFLAKLASDYRKPNGQFVIPP 169
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM-LQKGSLLCAVFSHSTADFF 186
A F++ LP+ GIG T + + GI T ++ Q S L F + A +
Sbjct: 170 G--AGEAFVADLPVSAFHGIGPATAARM-NSLGIYTGADLRTQSLSTLAHHFGKAAAFYH 226
Query: 187 LSVGLGLGSTNTPQA--RFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLR 243
G+ G N P R RKSI E TF A L+ L +++ + K L
Sbjct: 227 ---GIARGEDNRPVEVNRPRKSIGKETTFERDIRLPADLHAALGNLSQAVWQASAKRTLS 283
Query: 244 GRTLTLKLKTASFEVRTRAVTLQKYISSSEDI 275
GRT+TLKL+ F TR+ +L + S +
Sbjct: 284 GRTVTLKLRYEDFTQLTRSKSLPHCVQGSAQL 315
>gi|358012029|ref|ZP_09143839.1| DNA polymerase IV [Acinetobacter sp. P8-3-8]
Length = 351
Score = 156 bits (394), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 106/318 (33%), Positives = 172/318 (54%), Gaps = 22/318 (6%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG+R+AM ARKLCP+++ + +F KY S ++F Y SLDEA+L
Sbjct: 47 ARQFGLRSAMAMAQARKLCPQVVVIEPNFEKYREVSQQIHQIFQHYTSTIEPLSLDEAFL 106
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+TE + S E+AE +R +++ GLT SAGVAPN+ LAK+ SD NKPNG ++
Sbjct: 107 DVTENLQNIP-SATEVAECIRADIFKTTGLTASAGVAPNKFLAKIASDWNKPNGICIIKP 165
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHSTADFF 186
+ V FI LP++KI G+GKVT+ L+ + + T ++ Q ++L F F
Sbjct: 166 SQ--VQHFIHDLPLKKIPGVGKVTQEKLKSL-NLETLGDLQQVDENVLIHHFGKYGKQLF 222
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTF----SVTEDKALLYRKLAEIAEMLSADMQKEGL 242
L G+ R R+ IS E TF S+T+ + E + +QK+ +
Sbjct: 223 L-YAQGIDERPVQAERQRQQISKEITFDDDLSITQCSPY----WDNLIERVWLSLQKKQM 277
Query: 243 RGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK-AELP--VSLRLIGLRVT 299
+ R + +KLK +F+V + + + ++S +D+++ +LL+ ++P + RLIG+ +
Sbjct: 278 QARGVNVKLKLKNFQVLQHSKSFKLALNSQQDMVQVIKLLLQEMQIPEHLQFRLIGVGLY 337
Query: 300 QFNEDKVRAPSDPTQKTL 317
Q E + D TQ +L
Sbjct: 338 QLTEQQ-----DETQLSL 350
>gi|421563647|ref|ZP_16009463.1| DNA polymerase IV [Neisseria meningitidis NM2795]
gi|421907165|ref|ZP_16337050.1| DNA polymerase IV [Neisseria meningitidis alpha704]
gi|393291682|emb|CCI73036.1| DNA polymerase IV [Neisseria meningitidis alpha704]
gi|402340132|gb|EJU75335.1| DNA polymerase IV [Neisseria meningitidis NM2795]
Length = 352
Score = 156 bits (394), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 103/299 (34%), Positives = 162/299 (54%), Gaps = 17/299 (5%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG+ +AM A++LCP+ ++VP F Y S VF +Y SLDEAYL
Sbjct: 49 ARQFGLHSAMSVATAKRLCPQAVYVPPHFDLYRQVSAQIHTVFRRYTDLIEPLSLDEAYL 108
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T + + E+A+E+R +++ E GLT SAG+APN+ LAK+ SD KPNGQFVLP
Sbjct: 109 DVTRNFKNIPYAS-EVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPP 167
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADF 185
+ VM F+ +LP+ KI G+GKVT ++ + G+ T ++ ++G LL +H
Sbjct: 168 HK--VMAFLETLPLGKIPGVGKVTLKKMQSL-GMRTAGDLRRFERGELL----NHFGRYG 220
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLR 243
+ L + P R+ + ++ ED L L +AE L + ++ +
Sbjct: 221 YRLYDLARSTDERPVEAERERLQISTEITLPEDLPLEQAAGHLPHLAEDLWRQITRKNVE 280
Query: 244 GRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV----SLRLIGLRV 298
+++TLKLKT F + TR +T + +L+ A +L+ A +P + RLIG+ V
Sbjct: 281 AQSVTLKLKTYDFRIITRTLTYSSILPDCAALLQAAQMLM-ARVPPQTEDAFRLIGIGV 338
>gi|325860095|ref|ZP_08173221.1| DNA polymerase IV [Prevotella denticola CRIS 18C-A]
gi|325482380|gb|EGC85387.1| DNA polymerase IV [Prevotella denticola CRIS 18C-A]
Length = 359
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 114/323 (35%), Positives = 170/323 (52%), Gaps = 27/323 (8%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FGV +AMP AR+ CP L+ VP F +Y S VF +Y SLDEA+L
Sbjct: 47 ARPFGVHSAMPMAQARRRCPHLVVVPCHFDRYKAVSRQIHAVFHEYTDLVEPISLDEAFL 106
Query: 68 DITEVCRERGIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP 126
D+TE ++G+ ++IA E++ + + LT SAG++ N+LLAK+ SD+ KP+G F +
Sbjct: 107 DVTE--NKKGMDLAVDIAREIKQKILDRTSLTASAGISYNKLLAKISSDMRKPDGLFTVH 164
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADF 185
DR + F+ SLP+ K+ G+G T + D+ G+ T E++ Q L VF +
Sbjct: 165 PDR--ALGFVGSLPVEKLWGVGPKTAKRMHDM-GVFTGEQLRQVSRRHLVQVFG-KMGNI 220
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL-------LYRKLAEIAEMLSADMQ 238
+ G+ + RKS+ ERTF ED + LY + E+ E L+
Sbjct: 221 YYDFSRGIDNRPVVAVHERKSVGCERTF--LEDLHVGSKIIIELYHIVLELVERLA---- 274
Query: 239 KEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKA----ELPVSLRLI 294
+ G GRTLTLKLK + TR++T Q+ + + +DIL A LLK + PV RL+
Sbjct: 275 RSGFEGRTLTLKLKWDATTQITRSLTQQRVLRTKDDILPLAKQLLKETSCHDRPV--RLM 332
Query: 295 GLRVTQFNEDKVRAPSDPTQKTL 317
GL V+ +K + P + L
Sbjct: 333 GLSVSSPLPEKEESSHVPVEGLL 355
>gi|424796310|ref|ZP_18222059.1| DNA polymerase IV [Xanthomonas translucens pv. graminis ART-Xtg29]
gi|422795030|gb|EKU23796.1| DNA polymerase IV [Xanthomonas translucens pv. graminis ART-Xtg29]
Length = 353
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 115/314 (36%), Positives = 167/314 (53%), Gaps = 37/314 (11%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FG+R+AMP A +LCP+ IFVP DF +Y S R++F ++ SLDEAYL
Sbjct: 47 ARVFGIRSAMPALRAERLCPDAIFVPPDFARYKAVSRQVREIFQRHTDLIEPLSLDEAYL 106
Query: 68 DITEVCRERGI--SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL 125
D+T +G + EIA+ +R + EE LT SAG+APN+ LAK+ SD KP+GQFV+
Sbjct: 107 DVTA---PKGALSTATEIAQTIRAQIREETALTASAGIAPNKFLAKIASDWRKPDGQFVI 163
Query: 126 -PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTAD 184
P+ V F++ LP+ K+ G+GKV + L GI T ++ +H A+
Sbjct: 164 RPHQ---VDAFLTPLPVSKVHGVGKVMQAKL-AALGIVTVGDLR----------THGEAE 209
Query: 185 F---FLSVGL-------GLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEM 232
F S GL G+ + +SISSE TF+ ED AL L + +AE
Sbjct: 210 LEARFGSFGLRLYQRARGIDPRPVEANQQVQSISSEDTFA--EDLALDALAPAIRLLAEK 267
Query: 233 LSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELPVS- 290
++ RT+ LKLKTA F + TR+ T ++ S + + A L + +LP S
Sbjct: 268 TWTATRRTERIARTVVLKLKTAQFRILTRSFTPEQPPDSLQALTDIALALCQRVDLPAST 327
Query: 291 -LRLIGLRVTQFNE 303
RL+G+ + F+E
Sbjct: 328 RYRLVGVGLAGFHE 341
>gi|349687672|ref|ZP_08898814.1| DNA polymerase IV [Gluconacetobacter oboediens 174Bp2]
Length = 361
Score = 155 bits (393), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 106/308 (34%), Positives = 158/308 (51%), Gaps = 12/308 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFGVR+AMP IA + CP+L+FVP F Y S +F ++ P SLDEAYL
Sbjct: 53 ARRFGVRSAMPSVIALRKCPDLVFVPPRFDVYRAVSAQIHDIFSRFTPLIQPLSLDEAYL 112
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T + S IA+++R + E GLT SAG++ N+ LAK+ SD KP+GQFV+
Sbjct: 113 DVTHPLQPYP-SATAIAQDIRDRIRAETGLTASAGISYNKFLAKLASDYRKPDGQFVI-T 170
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH--STADF 185
RM F+++LP+ + GIG T + GI T ++ Q+ L + H ADF
Sbjct: 171 PRMG-PDFVATLPVEQFHGIGPATAARMH-ALGIRTGLDLRQQP--LSRLLRHFGKAADF 226
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRG 244
+ + G+ R R+SI +ERTF V D A + +++ + L G
Sbjct: 227 YYGIARGIDERPVEVNRPRRSIGAERTFEVDIHDWAAALDVIMDLSTRVWNRCTARSLTG 286
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKA--ELPVSLRLIGLRVTQFN 302
T+T+K+K F R T + + + D++ A LL P +RL+G+ V+
Sbjct: 287 ITVTIKVKYNDFRQIVRGRTALEPVRDATDLVDRAQGLLAPCFPPPRGIRLLGVTVSGLR 346
Query: 303 -EDKVRAP 309
D + AP
Sbjct: 347 ARDALAAP 354
>gi|404406098|ref|ZP_10997682.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Alistipes sp. JC136]
Length = 353
Score = 155 bits (393), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 100/278 (35%), Positives = 148/278 (53%), Gaps = 11/278 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FGVR+A+ +AR+LCP LIFVP F Y S R +F Y SLDEA+L
Sbjct: 48 ARPFGVRSAISSVLARRLCPALIFVPARFDVYKAVSQQIRDIFHDYTDLVEPLSLDEAFL 107
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D++ V S +A E++ + E GLT SAG++ N++LAK+ SD KP+G FV+P
Sbjct: 108 DVSHVR-----SATLVAREIKARIRAETGLTASAGISVNKMLAKIASDYRKPDGLFVIPP 162
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFF 186
DR + F++ LP+ + GIG+VT + GI T ++ Q L L F + ++
Sbjct: 163 DR--IDAFVAELPVERFFGIGEVTAEKMH-ALGIRTGADLRQWEELELVRHFGKAGRSYY 219
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
G+ R RKS+ +E TF T D+ +L +L ++ E + + + RGR
Sbjct: 220 -GYARGIDPRPVVPNRIRKSLGAETTFEADTADREVLLGELEQVCEEVWRRLVRHKFRGR 278
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL 283
T+ LKLK F TR+ TL + + S + + A LL
Sbjct: 279 TVVLKLKFDDFRQITRSRTLSRPVDSHDGLCLVAGELL 316
>gi|258546266|ref|ZP_05706500.1| DNA-directed DNA polymerase [Cardiobacterium hominis ATCC 15826]
gi|258518488|gb|EEV87347.1| DNA-directed DNA polymerase [Cardiobacterium hominis ATCC 15826]
Length = 353
Score = 155 bits (393), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 111/301 (36%), Positives = 153/301 (50%), Gaps = 10/301 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARR+G+ +AM A++ CP+LI P F Y S R + SLDEAYL
Sbjct: 50 ARRYGIHSAMSTHRAQQRCPQLILAPPRFAVYRAVSLQIRALMLAITDAVEPLSLDEAYL 109
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+++ E G S IAE L + GLT SAGV+ N++LAK+ SD+NKPNG V+
Sbjct: 110 DVSDSPHENG-SATRIAERLSAEILAATGLTASAGVSYNKMLAKIASDLNKPNGIAVITP 168
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADF 185
+ A F++SL I + GIGK T + GI T ++ L + +L H DF
Sbjct: 169 AQGA--DFVASLAIERFHGIGKATAAHMH-ALGIQTGADLRRLSRETLRHEFGKHG--DF 223
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRG 244
+ + G+ AR RKSI SE TF+ ED A LY+ L AD+Q+ L+
Sbjct: 224 YYDMARGIDLRPVEAARERKSIGSETTFARDIEDHAALYQALLAQNREAFADVQRRHLQP 283
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV-SLRLIGLRVTQFNE 303
TLTLKLK + F TR TL + ED + LL+ P +RL+G+ + E
Sbjct: 284 HTLTLKLKYSDFSQTTRRQTLSTPFAREEDAHYWIARLLQEIAPARPVRLVGITYSGLRE 343
Query: 304 D 304
D
Sbjct: 344 D 344
>gi|343472335|emb|CCD15475.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 610
Score = 155 bits (393), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 102/334 (30%), Positives = 167/334 (50%), Gaps = 20/334 (5%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR +GV +PGFI KLC +L+ VP D Y S + ++ +YDP+ ++ +DE L
Sbjct: 198 ARSYGVTTGIPGFIGMKLCRDLVIVPLDLEAYRAESAIVHRIASEYDPDCVSVGMDELTL 257
Query: 68 DITEVCRERG--ISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL 125
++++ +G ++ +++A ELR V+ E LT SAG+ P LAK+ S+ NKPNGQ+ L
Sbjct: 258 EVSDYLSRQGGTMTAVDVATELRARVFRETQLTSSAGIGPTAALAKIASNYNKPNGQYEL 317
Query: 126 P-NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTAD 184
+ R VM ++ LP+R GIGK E+ L+ INT ++ ++ LC V +
Sbjct: 318 RLHTREDVMRYVRDLPLRAAPGIGKAMENTLKG-LDINTLGDIYERRVELCYVLTEKLYR 376
Query: 185 FFLSVGLGLGSTN----TPQARF--------RKSISSERTFSVTEDKALLYRKLAEIAEM 232
F L +G+ S P F RKS+ SER FS KA L I +
Sbjct: 377 FLLGNAIGVMSWPCSCVAPAYEFCDRTLITARKSVGSERAFSALCSKAELKEVATTIFQA 436
Query: 233 LSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELP--VS 290
+ +++ R ++L+++ SF ++ +L ++ + + LL + S
Sbjct: 437 VYDELRANEWVCRQVSLRIRWPSFRIQQFTKSLPQHSDDHSTLNRALGELLLPHVSYYAS 496
Query: 291 LRLIGLRVTQFNEDK--VRAPSDPTQKTLTNFMT 322
+RL+G+R+ K + QKTL+ F T
Sbjct: 497 MRLLGIRLLDLVSKKEYLAKQRGGVQKTLSQFCT 530
>gi|421656075|ref|ZP_16096386.1| ImpB/MucB/SamB family protein [Acinetobacter baumannii Naval-72]
gi|408506381|gb|EKK08092.1| ImpB/MucB/SamB family protein [Acinetobacter baumannii Naval-72]
Length = 351
Score = 155 bits (392), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 109/301 (36%), Positives = 165/301 (54%), Gaps = 13/301 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG+R+AM ARKLCP+++ + +F KY S +F +Y SLDEAYL
Sbjct: 47 ARKFGLRSAMSMSQARKLCPQVVIIEPNFEKYRTVSAQIHSIFQQYTLLIEPLSLDEAYL 106
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+TE ++ S E+A +R ++ GLT SAGVAPN+ LAK+ SD NKPNG V+
Sbjct: 107 DVTENLKQIA-SATEVAMHIREDIFRLTGLTASAGVAPNKFLAKIASDWNKPNGLCVIKP 165
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
++A +FI LP++KI G+GKVT+ L+ + ++T + LQK + AV H +
Sbjct: 166 SQVA--SFIQDLPLKKIPGVGKVTQEKLQQL-ELHTLGD-LQK--IEEAVLVHHFGKYGQ 219
Query: 188 SVGL-GLGSTNTP-QA-RFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRG 244
+ L G N P QA R R+ IS E TF A +AE + ++K+ L
Sbjct: 220 QLYLYAQGIDNRPVQAERARQQISKETTFDSDFTLAQCQPYWHGLAEKVWQSLEKKQLNA 279
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELP--VSLRLIGLRVTQF 301
R + +KLK +F+ + + + I S +D+++ +LL + +P RLIG+ V Q
Sbjct: 280 RGVNIKLKLKNFQTLQHSKSFKNPIHSQQDLIQVLFLLLNEMHIPENFQFRLIGIGVYQL 339
Query: 302 N 302
Sbjct: 340 Q 340
>gi|416161050|ref|ZP_11606273.1| DNA polymerase IV [Neisseria meningitidis N1568]
gi|418288632|ref|ZP_12901092.1| DNA polymerase IV [Neisseria meningitidis NM233]
gi|418290884|ref|ZP_12902979.1| DNA polymerase IV [Neisseria meningitidis NM220]
gi|433473835|ref|ZP_20431195.1| impB/mucB/samB family protein [Neisseria meningitidis 97021]
gi|433481353|ref|ZP_20438620.1| impB/mucB/samB family protein [Neisseria meningitidis 2006087]
gi|433484383|ref|ZP_20441607.1| impB/mucB/samB family protein [Neisseria meningitidis 2002038]
gi|433486655|ref|ZP_20443847.1| impB/mucB/samB family protein [Neisseria meningitidis 97014]
gi|325128493|gb|EGC51371.1| DNA polymerase IV [Neisseria meningitidis N1568]
gi|372200836|gb|EHP14847.1| DNA polymerase IV [Neisseria meningitidis NM220]
gi|372201466|gb|EHP15389.1| DNA polymerase IV [Neisseria meningitidis NM233]
gi|432209296|gb|ELK65265.1| impB/mucB/samB family protein [Neisseria meningitidis 97021]
gi|432218110|gb|ELK73973.1| impB/mucB/samB family protein [Neisseria meningitidis 2006087]
gi|432220314|gb|ELK76137.1| impB/mucB/samB family protein [Neisseria meningitidis 2002038]
gi|432221174|gb|ELK76987.1| impB/mucB/samB family protein [Neisseria meningitidis 97014]
Length = 352
Score = 155 bits (392), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 105/303 (34%), Positives = 162/303 (53%), Gaps = 25/303 (8%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG+ +AM A++LCP+ ++VP F Y S VF +Y SLDEAYL
Sbjct: 49 ARQFGLHSAMSVATAKRLCPQAVYVPPHFDLYRQVSAQIHAVFRRYTDLIEPLSLDEAYL 108
Query: 68 DITEVCRERGISGI----EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF 123
D+T R I E+A+E+R +++ E GLT SAG+A N+ LAK+ SD KPNGQF
Sbjct: 109 DVT-----RNFKNIPYDSEVAKEIRAAIFAETGLTASAGIASNKFLAKIASDWRKPNGQF 163
Query: 124 VLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHS 181
VLP + VM F+ +LP+ KI G+GKVT ++ + G+ T ++ ++G LL +H
Sbjct: 164 VLPPHK--VMAFLETLPLGKIPGVGKVTLKKMQSL-GMQTAGDLRRFERGELL----NHF 216
Query: 182 TADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQK 239
+ L G+ P R+ + ++ ED L L +AE L + +
Sbjct: 217 GRYGYRLYDLARGTDERPVKAERERLQISTEITLPEDLPLEQAAGHLPHLAEDLWRQITR 276
Query: 240 EGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV----SLRLIG 295
+ + +++TLKLKT F + TR +T + +L+ A +L+ A +P + RLIG
Sbjct: 277 KNVEAQSVTLKLKTYDFRIITRTLTYSSVLPDCASLLQAAQMLM-ARVPPQTEDAFRLIG 335
Query: 296 LRV 298
+ V
Sbjct: 336 IGV 338
>gi|313206275|ref|YP_004045452.1| DNA-directed DNA polymerase [Riemerella anatipestifer ATCC 11845 =
DSM 15868]
gi|386321740|ref|YP_006017902.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Riemerella anatipestifer RA-GD]
gi|442314536|ref|YP_007355839.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Riemerella anatipestifer RA-CH-2]
gi|312445591|gb|ADQ81946.1| DNA-directed DNA polymerase [Riemerella anatipestifer ATCC 11845 =
DSM 15868]
gi|325336283|gb|ADZ12557.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Riemerella anatipestifer RA-GD]
gi|441483459|gb|AGC40145.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Riemerella anatipestifer RA-CH-2]
Length = 360
Score = 155 bits (392), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 95/277 (34%), Positives = 155/277 (55%), Gaps = 7/277 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++GVR+AM +A+K CP++IFV F +Y S+ R +F +Y SLDEAYL
Sbjct: 50 ARKYGVRSAMSSVVAKKKCPQIIFVKPRFHRYKEVSEQIRTIFFEYTDLVEPLSLDEAYL 109
Query: 68 DITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP 126
D+T ++GI S IA+E+R ++E GLT SAG++ N+ LAKV SDINKPNGQ +
Sbjct: 110 DVTH--NKKGIVSANLIAKEIRQKIFETTGLTASAGISVNKFLAKVASDINKPNGQKTIH 167
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFF 186
+ V++F+ +LPI + GIG VT + + + GI +++ +K +
Sbjct: 168 PTK--VLSFLENLPIERFYGIGNVTANKMYQL-GIYKGKDLKEKPLEYLVTHFGKMGGHY 224
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL-LYRKLAEIAEMLSADMQKEGLRGR 245
+ G+ + R KS+ E T+ D + ++L +A+ L ++K+ ++G+
Sbjct: 225 YDIVRGIHRSEVKPHRIAKSVGVEHTYVDDIDTEQDIDKQLMRLAQELYRRIEKKKVKGK 284
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL 282
+LTLK+K F + TR+ T Y + E++ + A L
Sbjct: 285 SLTLKIKYKDFSLFTRSKTQNLYFETEEEMYQTARFL 321
>gi|194098704|ref|YP_002001766.1| DNA polymerase IV [Neisseria gonorrhoeae NCCP11945]
gi|193933994|gb|ACF29818.1| putative DNA-damage-inducibile protein [Neisseria gonorrhoeae
NCCP11945]
Length = 368
Score = 155 bits (392), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 103/299 (34%), Positives = 161/299 (53%), Gaps = 17/299 (5%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG+ +AM ++LCP+ ++VP F Y S VF +Y S DEAYL
Sbjct: 65 ARQFGLHSAMSVATVKRLCPQAVYVPPHFDLYRQVSAQIHAVFRRYTDLIEPLSPDEAYL 124
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T + +G E+A+E+R +++ E GLT SAG+APN+ LAK+ SD KPNGQFVLP
Sbjct: 125 DVTRNFKNIPYAG-EVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPP 183
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADF 185
+ VM F+ +LP+ KI G GKVT ++ + G+ T ++ ++G LL +H
Sbjct: 184 HK--VMAFLETLPLGKIPGAGKVTLKKMQSL-GMRTAGDLRRFERGELL----NHFGRYG 236
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLR 243
+ L G+ P R+ + ++ ED L L +AE L + ++ +
Sbjct: 237 YRLYDLARGTDEHPVKAERERLQISTEITLPEDLPLGQAAGHLPHLAEDLWRQITRKNVE 296
Query: 244 GRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV----SLRLIGLRV 298
+++TLKLKT F + TR +T + +L+ A +L+ A +P + RLIG+ V
Sbjct: 297 AQSVTLKLKTYDFRIITRTLTYSSVLPDCAALLQAAQMLM-ARVPPQTEDAFRLIGIGV 354
>gi|28210190|ref|NP_781134.1| DNA polymerase IV [Clostridium tetani E88]
gi|28202626|gb|AAO35071.1| putative DNA polymerase IV [Clostridium tetani E88]
Length = 352
Score = 155 bits (392), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 102/304 (33%), Positives = 164/304 (53%), Gaps = 15/304 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++GV +AMP F+AR+ CP I+VP+ +Y S K+F + P S+DEAYL
Sbjct: 48 ARKYGVHSAMPVFMAREKCPNGIYVPSRHDRYREVSKNIFKIFYEITPIVEPVSIDEAYL 107
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
DIT RE +EI + ++ +++ GLT S G++ N+ LAK+ SD NKPNG ++
Sbjct: 108 DITNCGRE----PLEIVKYIKKEIWKREGLTASMGISYNKFLAKLASDWNKPNGVKIIKK 163
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
D + + LPI K+ G+GK + + ++ GI E+M + L +F F L
Sbjct: 164 D--MIPNILLPLPINKVHGMGKKSVEKMNNI-GIFKIEDMYK---LPLDLFIEYFGKFGL 217
Query: 188 SVG---LGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLR 243
+ G + R RKSI +E T T+D + + L ++ +S ++K +
Sbjct: 218 EIYERIRGFDNREVQVGRERKSIGNETTLRKDTKDTEEIKKYLYTFSKSISEGLKKNHMW 277
Query: 244 GRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKA-ELPVSLRLIGLRVTQFN 302
G+T+T+K+K FE T++ TL+ YI+ E I A +L + + LRLIGL ++ +
Sbjct: 278 GKTVTVKIKNYKFETTTKSKTLKDYINEEEKIYIEACKILDSINIKEPLRLIGLTLSNLS 337
Query: 303 EDKV 306
E K+
Sbjct: 338 ESKI 341
>gi|227539640|ref|ZP_03969689.1| DNA-directed DNA polymerase [Sphingobacterium spiritivorum ATCC
33300]
gi|227240553|gb|EEI90568.1| DNA-directed DNA polymerase [Sphingobacterium spiritivorum ATCC
33300]
Length = 350
Score = 155 bits (392), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 116/319 (36%), Positives = 174/319 (54%), Gaps = 16/319 (5%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++GV++AM A +LCP+LIF F Y S R++F +Y SLDEAYL
Sbjct: 42 ARKYGVKSAMSSRQALQLCPDLIFTRPRFDIYKEVSQQIRQIFLRYTDLIEPLSLDEAYL 101
Query: 68 DITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVL 125
D+TE ++GI S I+IA +++ + EE LT SAGV+ N+ +AK+ SDINKP+G F+
Sbjct: 102 DVTE--DKQGIGSAIDIARQIKQEIQEELNLTVSAGVSVNKFVAKIASDINKPDGLTFIG 159
Query: 126 PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADF 185
P+ V+ F+ LPI K G+GKVT ++ + GI +M Q T +F
Sbjct: 160 PS---KVVAFMEHLPIEKFFGVGKVTASKMKKL-GIYRGADMKQWTQEALTRHFGKTGEF 215
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRG 244
F ++ G+ + R KSIS E TF+ D +L L E++ L + + L G
Sbjct: 216 FYNIVRGIDNRPVQPNRQTKSISVEDTFAQDIADIQVLEDILKELSVRLVKRLNAKELAG 275
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELP-VSLRLIGLRVTQF- 301
+T+TLK+K + F TR++T ++ E + + AS LL K L + +RL+G+ V+ F
Sbjct: 276 KTVTLKVKFSDFSQATRSMTALDVVTGEEVLYQIASELLNKVSLTEMKVRLLGVGVSNFT 335
Query: 302 NEDKVRAPSDPTQKTLTNF 320
ED P + LT F
Sbjct: 336 GED----PDRQINRQLTLF 350
>gi|359686511|ref|ZP_09256512.1| DNA polymerase IV [Leptospira santarosai str. 2000030832]
Length = 360
Score = 155 bits (392), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 111/327 (33%), Positives = 172/327 (52%), Gaps = 29/327 (8%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR+AMP A +L P IFV F Y SD R++F +Y SLDE YL
Sbjct: 50 ARKFGVRSAMPCSKAAQLAPRAIFVFPRFEVYKEVSDRIREIFLEYTDRVEMLSLDEGYL 109
Query: 68 DITEVCRERGIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVL 125
D+T ++ I ++IA+E+R+ +++ LT SAGV ++L+AK+ S+ NKPNG VL
Sbjct: 110 DVT--FNKKNIPFAVKIAKEIRSEIFKRTELTASAGVGNSKLIAKLASEKNKPNGLTVVL 167
Query: 126 PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADF 185
P+D V FI LPI G+GKVT ++ + GI+T +++ K T +
Sbjct: 168 PDD---VTAFIDPLPIGSFHGVGKVTAQKMKKL-GIHTGKDLRTKNINELVQHFGKTGIY 223
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSVTE-DKALLYRKLAEIAEMLSADMQKEGLRG 244
+ + G R RKS+ SE TF + D+ L+R+L EIA ++K G
Sbjct: 224 YYKISRGEDEREVEPFRERKSLGSENTFDQDKTDREDLFRQLREIAVETERRLKKRNFAG 283
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV---------SLRLIG 295
+TLTLK+K F ++TR+ TL + I +++++ A+ L + + ++RL+G
Sbjct: 284 KTLTLKIKFQDFSLKTRSKTLSEPIFNADELYSIAAELFEEFFEIKDGKQTSTKAIRLLG 343
Query: 296 LRVTQFNEDKVRAPSDPTQKTLTNFMT 322
+ + S PT K + F T
Sbjct: 344 INL-----------SHPTDKEPSLFQT 359
>gi|325270034|ref|ZP_08136642.1| DNA-directed DNA polymerase IV [Prevotella multiformis DSM 16608]
gi|324987619|gb|EGC19594.1| DNA-directed DNA polymerase IV [Prevotella multiformis DSM 16608]
Length = 364
Score = 155 bits (392), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 114/317 (35%), Positives = 166/317 (52%), Gaps = 19/317 (5%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FGV +AMP AR+ CP L+ VP F +Y S VF +Y SLDEA+L
Sbjct: 47 ARPFGVHSAMPMAQARRRCPHLVVVPCHFDRYKAVSRQIHAVFHEYTDLVEPISLDEAFL 106
Query: 68 DITEVCRERGIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP 126
D+TE ++G+ ++IA E++ + + LT SAGV+ N+LLAK+ SD+ KP+G F +
Sbjct: 107 DVTE--NKKGMELAVDIAREIKQKILDRTSLTASAGVSYNKLLAKISSDMRKPDGLFTVH 164
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADF 185
DR + FI SLP+ K+ GIG T + D+ G+ T ++ Q L VF
Sbjct: 165 PDR--ALGFIGSLPVEKLWGIGPKTAKRMHDM-GVFTGGQLRQVSRRHLVQVFG-KMGHV 220
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTF---SVTEDKAL--LYRKLAEIAEMLSADMQKE 240
+ G+ + RKS+ ERTF E K + LY + E+ E L+ +
Sbjct: 221 YYDFSRGIDNRRVVAFHERKSVGCERTFLEDIHVESKIIIELYHIVLELVERLA----RS 276
Query: 241 GLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL--KAELPVSLRLIGLRV 298
G GRTLTLKLK + TR++T ++ + + +DIL A LL A +RL+GL V
Sbjct: 277 GFEGRTLTLKLKWDAASQITRSLTQERVLRTKDDILPLAKRLLGETAYHDRPVRLMGLSV 336
Query: 299 TQFNEDKVRAPSDPTQK 315
+ +K AP P +
Sbjct: 337 SSPVIEKADAPGRPVWR 353
>gi|93117311|gb|ABE99573.1| DinB [Neisseria meningitidis]
gi|93117319|gb|ABE99577.1| DinB [Neisseria meningitidis]
Length = 336
Score = 155 bits (392), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 99/285 (34%), Positives = 156/285 (54%), Gaps = 13/285 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG+ +AM A++LCP+ ++VP F Y S VF +Y SLDEAYL
Sbjct: 49 ARQFGLHSAMSVATAKRLCPQAVYVPPHFDLYRQVSAQIHAVFRRYTDLIEPLSLDEAYL 108
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T + + E+A+E+R +++ E GLT SAG+APN+ LAK+ SD KPNGQFVLP
Sbjct: 109 DVTRNFKNIPYAS-EVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPP 167
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADF 185
+ VM F+ +LP+ KI G+GKVT ++ + G+ T ++ ++G LL +H
Sbjct: 168 HK--VMAFLETLPLGKIPGVGKVTLKKMQSL-GMQTAGDLRRFERGELL----NHFGRYG 220
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLR 243
+ L G+ P R+ + ++ ED L L +AE L + ++ +
Sbjct: 221 YRLYDLARGTDERPVKAERERLQISTEITLPEDLPLEQAAGHLPHLAEDLWRQITRKNVE 280
Query: 244 GRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELP 288
+++TLKLKT F + TR +T + +L+ A +L+ A +P
Sbjct: 281 AQSVTLKLKTYDFRIITRTLTYSSVLPDCTALLQAAQMLM-ARVP 324
>gi|315639680|ref|ZP_07894820.1| DNA-directed DNA polymerase IV [Enterococcus italicus DSM 15952]
gi|315484641|gb|EFU75097.1| DNA-directed DNA polymerase IV [Enterococcus italicus DSM 15952]
Length = 374
Score = 155 bits (392), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 106/303 (34%), Positives = 168/303 (55%), Gaps = 17/303 (5%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++G+ +AM A +LCP+ +F+P ++ KY S R++F +Y S+DEAYL
Sbjct: 63 ARQYGIHSAMSAQKAYELCPQAVFLPGNYEKYRAVSKQVREIFQRYTDLVEPMSIDEAYL 122
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLP 126
D+TE + + S I++A+ ++ ++ E LTCSAGV+ N+ LAK+ SD KP G V+P
Sbjct: 123 DVTE-NKIQAKSAIKVAKCIQYDIWHELQLTCSAGVSYNKFLAKLASDYQKPRGLTVVMP 181
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGS-LLCAVFSHSTADF 185
D +A F+ LPI K G+GK T + ++ GI+T ++ +K L F
Sbjct: 182 EDAVA---FLKKLPIEKFHGVGKKTVPKMHEL-GIHTGADLYEKDEFFLIQQFGKMGYSL 237
Query: 186 FLSV-GLGLGSTNTPQARFRKSISSERTFS---VTEDKALLYRKLAEIAEMLSADMQKEG 241
F V G+ L T R RKS+ ERT+ TE+ L +L +++E ++ ++K
Sbjct: 238 FRKVRGIHLSPVVT--TRERKSVGKERTYGTLLTTEESCL--TQLRQLSEEVADLLKKLE 293
Query: 242 LRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVT 299
G + LK++TA F +T+ +TL + E+I ASVL + E V +RL+G+ VT
Sbjct: 294 RHGNIVVLKMRTADFVTKTKRMTLNRATHRKEEIFSVASVLFEEENQVDRGIRLLGVTVT 353
Query: 300 QFN 302
N
Sbjct: 354 GLN 356
>gi|416110629|ref|ZP_11592173.1| DNA polymerase IV [Riemerella anatipestifer RA-YM]
gi|315023043|gb|EFT36056.1| DNA polymerase IV [Riemerella anatipestifer RA-YM]
Length = 348
Score = 155 bits (392), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 95/278 (34%), Positives = 155/278 (55%), Gaps = 7/278 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++GVR+AM +A+K CP++IFV F +Y S+ R +F +Y SLDEAYL
Sbjct: 38 ARKYGVRSAMSSVVAKKKCPQIIFVKPRFHRYKEVSEQIRTIFFEYTDLVEPLSLDEAYL 97
Query: 68 DITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP 126
D+T ++GI S IA+E+R ++E GLT SAG++ N+ LAKV SDINKPNGQ +
Sbjct: 98 DVTH--NKKGIVSANLIAKEIRQKIFETTGLTASAGISVNKFLAKVASDINKPNGQKTIH 155
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFF 186
+ V++F+ +LPI + GIG VT + + + GI +++ +K +
Sbjct: 156 PTK--VLSFLENLPIERFYGIGNVTANKMYQL-GIYKGKDLKEKPLEYLVTHFGKMGGHY 212
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL-LYRKLAEIAEMLSADMQKEGLRGR 245
+ G+ + R KS+ E T+ D + ++L +A+ L ++K+ ++G+
Sbjct: 213 YDIVRGIHRSEVKPHRIAKSVGVEHTYVDDIDTEQDIDKQLMRLAQELYRRIEKKKVKGK 272
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL 283
+LTLK+K F + TR+ T Y + E++ + A L
Sbjct: 273 SLTLKIKYKDFSLFTRSKTQNLYFETEEEMYQTARFLW 310
>gi|56160432|gb|AAV80830.1| polymerase kappa isoform 4 [Homo sapiens]
Length = 461
Score = 155 bits (391), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 83/168 (49%), Positives = 111/168 (66%), Gaps = 3/168 (1%)
Query: 77 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 135
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 287 GTSAQEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 345
Query: 136 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 195
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 346 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGS 404
Query: 196 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLR 243
T+ + RKS+S ERTFS Y E+ L+ D+QKE L+
Sbjct: 405 THLTRDGERKSMSVERTFSEINKAEEQYSLCQELCSELAQDLQKERLK 452
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 44/69 (63%), Positives = 53/69 (76%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFGVRAAMPGFIA++LCP+LI VP +F KY S +++ YDPNFMA SLDEAYL
Sbjct: 143 ARRFGVRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYL 202
Query: 68 DITEVCRER 76
+IT+ ER
Sbjct: 203 NITKHLEER 211
>gi|383640097|ref|ZP_09952503.1| DNA-directed DNA polymerase [Sphingomonas elodea ATCC 31461]
Length = 361
Score = 155 bits (391), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 104/298 (34%), Positives = 158/298 (53%), Gaps = 9/298 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FGVR+A+P A + CP+LIFV F Y S +F Y SLDEAYL
Sbjct: 52 ARAFGVRSALPSVTALRRCPDLIFVRPRFDVYKAVSQAIHAIFADYTDLIQPLSLDEAYL 111
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+TE R G + A+E+R + E GLT SAG++ N+ LAK+ SD KPNGQF +
Sbjct: 112 DVTEDRRRLG-TAWATAKEIRARILAETGLTASAGISYNKFLAKLASDHRKPNGQFAVTP 170
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
+ A ++ +LP+ + G+G VT +R + GI T ++ K A S A+++
Sbjct: 171 EMGAA--WVETLPVSRFHGVGPVTAAKMRRL-GIETGADLRAKSMDFLARHFGSNAEWYH 227
Query: 188 SVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
+ G+ R RKS SE TFS +T+D + L + ++ + +G GR
Sbjct: 228 QIVRGVDERPVNPNRERKSSGSETTFSRDLTDDAEIEAAVLGQADDVWEWCERTQGF-GR 286
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQF 301
T T+K+K A F++ TR+ + ++S E + + LL+ LP +RL+G+ V+ F
Sbjct: 287 TATVKIKYADFQIITRSRSQPAPMTSREQLHAASLALLRLVLPTPKGIRLVGVTVSNF 344
>gi|323138008|ref|ZP_08073082.1| DNA-directed DNA polymerase [Methylocystis sp. ATCC 49242]
gi|322396727|gb|EFX99254.1| DNA-directed DNA polymerase [Methylocystis sp. ATCC 49242]
Length = 382
Score = 155 bits (391), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 100/300 (33%), Positives = 162/300 (54%), Gaps = 11/300 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGV +AMP AR+ CP+LIFV F Y S R++F +Y SLDEAYL
Sbjct: 75 ARKFGVHSAMPSVTARRKCPDLIFVKPRFDVYKAVSTQIREIFAEYTAIIEPLSLDEAYL 134
Query: 68 DITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP 126
D+T +GI + EIA+E+R ++ + GLT SAGV+ N+ LAK+ SD KP+G FV+
Sbjct: 135 DVT--TNLKGIETATEIAQEIRAAIRSKIGLTASAGVSYNKFLAKLASDHRKPDGMFVI- 191
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADF 185
RM F+ + + K G+G T+ + + GI+T ++ + L F + F
Sbjct: 192 TPRMGP-AFVEGMAVEKFHGVGPATKAKM-NRLGIHTGRDLRSQALPFLIENFGKAGGHF 249
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRG 244
+ + G+ R RKS+ +E+TF++ D A + L + + + + G+RG
Sbjct: 250 YW-ISRGVDHRPVRADRIRKSVGAEQTFALDMTDLAAMREALEPVIDKVWRHCETTGVRG 308
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFN 302
RT+TLK+K + F++ TR+ TL I + ++ ++ L P +RL+G+ ++
Sbjct: 309 RTVTLKVKFSDFDLITRSRTLPHAIDTRAELARNVFETLTGAFPFRKPVRLLGVSISSLG 368
>gi|93117313|gb|ABE99574.1| DinB [Neisseria meningitidis]
Length = 336
Score = 155 bits (391), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 99/285 (34%), Positives = 156/285 (54%), Gaps = 13/285 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG+ +AM A++LCP+ ++VP F Y S VF +Y SLDEAYL
Sbjct: 49 ARQFGLHSAMSVATAKRLCPQAVYVPPHFDLYRQVSAQIHAVFRRYTDLIEPLSLDEAYL 108
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T + + E+A+E+R +++ E GLT SAG+APN+ LAK+ SD KPNGQFVLP
Sbjct: 109 DVTRNFKNIPYAS-EVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPP 167
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADF 185
+ VM F+ +LP+ KI G+GKVT ++ + G+ T ++ ++G LL +H
Sbjct: 168 HK--VMAFLETLPLGKIPGVGKVTLKKMQSL-GMQTAGDLRRFERGELL----NHFGRYG 220
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLR 243
+ L G+ P R+ + ++ ED L L +AE L + ++ +
Sbjct: 221 YRLYDLARGTDERPVKAERECLQISTEITLPEDLPLEQAAGHLPHLAEDLWRQITRKNVE 280
Query: 244 GRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELP 288
+++TLKLKT F + TR +T + +L+ A +L+ A +P
Sbjct: 281 AQSVTLKLKTYDFRIITRTLTYSSVLPDCTALLQAAQMLM-ARVP 324
>gi|239905076|ref|YP_002951815.1| DNA polymerase IV [Desulfovibrio magneticus RS-1]
gi|239794940|dbj|BAH73929.1| DNA polymerase IV [Desulfovibrio magneticus RS-1]
Length = 394
Score = 155 bits (391), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 104/298 (34%), Positives = 159/298 (53%), Gaps = 6/298 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR +GVR+AMP A++ CP +F+P + +Y+ S + + ++ P AS+DEAY+
Sbjct: 46 ARVYGVRSAMPVSEAKRRCPHGVFLPGNRRRYSEVSRIVMETLGRFSPLVEPASIDEAYV 105
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
DIT G +A ++ + E GL CS GVAP + +AK+ SD +KP+G ++
Sbjct: 106 DITGSQTLFGPPET-MARAMKADIREATGLPCSVGVAPVKFIAKIASDYDKPDGLTIVTP 164
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
+ + F+ LP+ KI G+GK E L + GI ++ + A
Sbjct: 165 E--TALDFLGPLPVSKIPGVGKRAEESLARL-GIRVVADIRRHEPEFLARHCGKWGLDLY 221
Query: 188 SVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRT 246
GS R KS+S+E TF T D+ +L L + AE + ++++E LRGRT
Sbjct: 222 DKAHARGSAVVCTDREAKSVSAENTFEADTADRDILAAWLLKQAERVGRELRQESLRGRT 281
Query: 247 LTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFNE 303
+T+KLK +F+ TR+ TL + +S I + A LL AE LP LRLIG+ V+QF E
Sbjct: 282 VTIKLKFNTFKQITRSRTLAEPTASDSAIFETARALLDAEPLPHPLRLIGVGVSQFGE 339
>gi|93117305|gb|ABE99570.1| DinB [Neisseria meningitidis H44/76]
Length = 335
Score = 155 bits (391), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 97/280 (34%), Positives = 154/280 (55%), Gaps = 12/280 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG+ +AM A++LCP+ ++VP F Y S VF +Y SLDEAYL
Sbjct: 49 ARQFGLHSAMSVATAKRLCPQAVYVPPHFDLYRQVSAQIHAVFRRYTDLIEPLSLDEAYL 108
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T + +G ++A+E+R +++ E GLT SAG+APN+ LAK+ SD KPNGQFVLP
Sbjct: 109 DVTRNFKNIPYAG-DVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPP 167
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADF 185
+ VM F+ +LP+ KI G+GKVT ++ + G+ T ++ ++G LL +H
Sbjct: 168 HK--VMAFLETLPLGKIPGVGKVTLKKMQSL-GMRTAGDLRRFERGELL----NHFGRYG 220
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLR 243
+ L G+ P R+ + ++ ED L L +AE L + ++ +
Sbjct: 221 YRLYDLVRGTDERPVKAERERLQISTEITLPEDLPLEQAAGHLPHLAEDLWRQITRKNVE 280
Query: 244 GRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL 283
+++TLKLKT F + TR +T + +L+ A +L+
Sbjct: 281 AQSVTLKLKTYDFRIITRTLTYSSVLPDCAALLQAAQMLM 320
>gi|30048187|gb|AAH50718.1| POLK protein [Homo sapiens]
Length = 472
Score = 155 bits (391), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 83/168 (49%), Positives = 111/168 (66%), Gaps = 3/168 (1%)
Query: 77 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 135
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 287 GTSAQEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 345
Query: 136 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 195
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 346 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGS 404
Query: 196 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLR 243
T+ + RKS+S ERTFS Y E+ L+ D+QKE L+
Sbjct: 405 THLTRDGERKSMSVERTFSEINKAEEQYSLCQELCSELAQDLQKERLK 452
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 44/69 (63%), Positives = 53/69 (76%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFGVRAAMPGFIA++LCP+LI VP +F KY S +++ YDPNFMA SLDEAYL
Sbjct: 143 ARRFGVRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYL 202
Query: 68 DITEVCRER 76
+IT+ ER
Sbjct: 203 NITKHLEER 211
>gi|299821605|ref|ZP_07053493.1| DNA-directed DNA polymerase IV [Listeria grayi DSM 20601]
gi|299817270|gb|EFI84506.1| DNA-directed DNA polymerase IV [Listeria grayi DSM 20601]
Length = 356
Score = 155 bits (391), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 107/300 (35%), Positives = 162/300 (54%), Gaps = 13/300 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGV +AMP A KLCP+ IF+ + + Y S+ R +F +Y SLDEAYL
Sbjct: 51 ARKFGVHSAMPTKQAVKLCPQGIFIHGNMSHYVEVSNQIRAIFHRYTDLIEPLSLDEAYL 110
Query: 68 DITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP 126
D+T+ + G+ S +A++++ +++ E GLT SAGV+ N+ +AK+ SD +KP+G V+P
Sbjct: 111 DVTD--NKVGMKSATYLAQDIQRTIFRELGLTASAGVSYNKFIAKIASDYHKPHGITVVP 168
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTAD 184
+ F+ +PI K G+GKVT L + GI T ++ + LL + H
Sbjct: 169 PEEAE--AFLEGIPITKFYGVGKVTAEKLHRL-GIYTGADLKAWSEWDLLRELNKHGY-Q 224
Query: 185 FFLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLR 243
+ V G S R RKS+ E TF D+ ++ R L + A +S +QK
Sbjct: 225 LYRHV-RGQSSNIVNPNRDRKSVGKETTFEKDVWDEIMIQRYLRKFAAQISERLQKIHKN 283
Query: 244 GRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQF 301
G+T+ LK++ F TR +TL +Y++ SE I + LL A S+RLIGL VT
Sbjct: 284 GKTVVLKIRYRDFTTYTRRLTLSEYVNDSEAIFQAGKALLNASYSGEESIRLIGLTVTNL 343
>gi|340780896|ref|YP_004747503.1| DNA polymerase IV [Acidithiobacillus caldus SM-1]
gi|340555049|gb|AEK56803.1| DNA polymerase IV [Acidithiobacillus caldus SM-1]
Length = 373
Score = 154 bits (390), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 102/297 (34%), Positives = 152/297 (51%), Gaps = 7/297 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFG+R+AM AR LCP+ IFV Y S + Y SLDEA+L
Sbjct: 58 ARRFGIRSAMSAARARSLCPQAIFVRPRMDAYREVSRQVMTILRSYTALVEPLSLDEAFL 117
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T + G +EIA E+ ++ E GLT SAGV+ N+LLAK+ SD KP+G FV+P
Sbjct: 118 DVTAATTD-GTLAVEIAREILDRIHRETGLTASAGVSYNKLLAKLASDWRKPHGLFVIPP 176
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
+R + F++ LP+ K+ G+G T L G+ T ++ + +F
Sbjct: 177 ERG--LAFLAPLPVGKLHGVGPATVKKL-SAMGVETVLDLRNLSLEFLVTHFGKSGGWFY 233
Query: 188 SVGLGLGSTNTPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLRGRT 246
V + +R RKS+ +ERTFS ED++++ L E+A ++A +Q L G T
Sbjct: 234 DVARAIDERPVQPSRQRKSVGTERTFSKNLEDRSVMRTTLQEMAAQVAARLQALNLAGHT 293
Query: 247 LTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELP--VSLRLIGLRVTQF 301
+ +K + F TRA T + I S + I LL +P S+RL+G+ V+
Sbjct: 294 VNIKARFPDFTTVTRAYTATEGIGSVDAIAALLPELLDRAVPKSASVRLLGITVSSL 350
>gi|389690299|ref|ZP_10179316.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Microvirga sp. WSM3557]
gi|388589817|gb|EIM30105.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Microvirga sp. WSM3557]
Length = 378
Score = 154 bits (390), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 110/316 (34%), Positives = 164/316 (51%), Gaps = 14/316 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFGV +AMP AR+ C +LIFV F Y S R++F +Y P SLDEAYL
Sbjct: 71 ARRFGVHSAMPSVTARRKCADLIFVKPRFDVYKQVSLQIREIFHEYTPLVEPLSLDEAYL 130
Query: 68 DITEVCRERGIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP 126
D+TE +GI ++A E+R +++E GLT S G++ + LAK+ SD KPNG FV+
Sbjct: 131 DVTENL--KGIPYATQVAREIRAKIFQETGLTASVGISYQKFLAKMASDQRKPNGMFVIT 188
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFF 186
+ F+ LPI+K GIG T + GI T ++ + ++
Sbjct: 189 PEMGP--AFMEQLPIQKFHGIGPATAAKF-NRLGIFTGLDLKGRSLEFLQERFGKAGSYY 245
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRG 244
+ G+ R RKS+ +E TFS +TE +A + L I + + + G+RG
Sbjct: 246 YWLAQGVDHRPVCPDRIRKSVGAENTFSNDLTELEA-MKTALQPIIDKVWRHCDQTGVRG 304
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFN 302
RT+TLK+K A F TR+ TL + E + + LL A +P +RL+G+ ++ N
Sbjct: 305 RTVTLKVKYADFHQITRSRTLSGMVEGREALEAASFELLSALVPFPKPVRLLGVSLSTLN 364
Query: 303 EDKVRAPSDPTQKTLT 318
D+ S+P Q +L
Sbjct: 365 TDE---ESEPPQLSLA 377
>gi|395003647|ref|ZP_10387772.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Acidovorax sp. CF316]
gi|394318442|gb|EJE54873.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Acidovorax sp. CF316]
Length = 422
Score = 154 bits (390), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 106/299 (35%), Positives = 155/299 (51%), Gaps = 11/299 (3%)
Query: 7 SARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAY 66
+AR+FGV +AM A KLCP I +P DF + +S L + + P +DE Y
Sbjct: 96 AARQFGVGSAMGMMKAAKLCPHAIVLPVDFDEVRRFSRLFKSTIAEIAPVMQDRGVDEVY 155
Query: 67 LDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP 126
+D T+V + G +A ++ S+++ GLTCS GVAPNRLLAK+ S+ NKPNG ++
Sbjct: 156 IDFTDVPGGQREGGRVLARLIQKSIFDVTGLTCSIGVAPNRLLAKMASEFNKPNGISIVH 215
Query: 127 NDRMAVMTFISSLPIRKIGGIG-KVTEHILRDVFGINTCEEM-LQKGSLLCAVFSHSTAD 184
+ + I L +RKI GIG K E + GI T E+ Q L A F S+
Sbjct: 216 EEDLK--DRIWPLNVRKINGIGPKAGEKLA--ALGITTIGELAAQDPQWLIARFGQSSGA 271
Query: 185 FFLSVGLGLGSTNTPQARFRKSISSERTFS----VTEDKALLYRKLAEIAEMLSADMQKE 240
+ V G + S+S E TF DKA L R ++ E ++AD+Q++
Sbjct: 272 WMHRVAWGRDDSPVVTESEPVSMSRETTFDRDLHAVRDKAELGRIFTDLCERVAADLQRK 331
Query: 241 GLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK-AELPVSLRLIGLRV 298
G G+T+ +KL+ F + TR TL +Y + I + A + LK L LRL+G+RV
Sbjct: 332 GYVGKTIGIKLRYDDFRIATRDQTLDRYTQDAATIRRTAGLCLKRVPLDRKLRLLGVRV 390
>gi|261334858|emb|CBH17852.1| DNA polymerase kappa, putative [Trypanosoma brucei gambiense
DAL972]
Length = 572
Score = 154 bits (390), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 99/314 (31%), Positives = 163/314 (51%), Gaps = 24/314 (7%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR G+R MPGF+A K+CP L+ +P DF Y S+ R++ +YDPN++ LDE L
Sbjct: 175 ARGRGIRQGMPGFLALKICPNLLILPPDFDAYNEESNTVRRIVAEYDPNYIVVGLDELAL 234
Query: 68 DITE-VCRERGISGIE-IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL 125
+++ + R G E +A ELR V+ E LT SAG+ P LAK+ S+INKPNGQ L
Sbjct: 235 EVSAYIERFEGTKTAEDVASELRVRVFGETKLTASAGIGPTAALAKIASNINKPNGQHDL 294
Query: 126 P-NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTAD 184
+ R VMT++ L +R + G+GKVTE +L+ GI T ++ + LC + ++
Sbjct: 295 NLHTREDVMTYVRDLGLRSVPGVGKVTEALLKG-LGITTLSDIYNRRVELCYILHNNLFR 353
Query: 185 FFLSVGLGL-------GSTNT-----PQARFRKSISSERTFSVTEDKALLYRKLAEIAEM 232
F L +G+ + NT RK+ISSER+ + K + + +
Sbjct: 354 FLLGASIGIMQWPDAATAANTENCEGATGEQRKAISSERSITTPRTKEGMQEMVDTVFNG 413
Query: 233 LSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLR 292
+M+K + R ++L ++ AS+ + +L ++ S + + L+ LP + +
Sbjct: 414 AYEEMRKSEIMCRRISLTIRWASYRYQQYTKSLIQHSDDSATLRRAVDELM---LPHAAK 470
Query: 293 -----LIGLRVTQF 301
L+G+R++
Sbjct: 471 YSEMCLLGVRLSDL 484
>gi|90418642|ref|ZP_01226553.1| DNA polymerase IV [Aurantimonas manganoxydans SI85-9A1]
gi|90336722|gb|EAS50427.1| DNA polymerase IV [Aurantimonas manganoxydans SI85-9A1]
Length = 399
Score = 154 bits (390), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 112/319 (35%), Positives = 167/319 (52%), Gaps = 20/319 (6%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR +GVR+AMP AR+ CP+LIFV F Y S R +F ++ P SLDEAYL
Sbjct: 90 ARVYGVRSAMPSVTARRRCPDLIFVKPRFEVYKAISAEIRAIFAEHTPIIEPLSLDEAYL 149
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+TE + S +IAE +R + E GLT SAGV+ N+ LAK+ SD KP+G FV+
Sbjct: 150 DVTENLHDIP-SATQIAEMIRQRIREVTGLTASAGVSYNKFLAKLASDYRKPDGIFVV-T 207
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
M F+ LPI + G+G T ++ FGI+T ++ K T ++
Sbjct: 208 PAMGP-GFVEDLPIGRFHGVGPATAAKMQR-FGIHTGRDLHDKSLPFLQEHFGKTGPYYY 265
Query: 188 SVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQK-------E 240
S+ G+ R RKS+ +E TF A L+ E+ E L + K
Sbjct: 266 SISRGIDERPVRANRIRKSVGAENTFG-----ADLF-AFDEMREALQPILDKVWRYCETS 319
Query: 241 GLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRV 298
+RGRT+TLK+K A F+ TRA + + ++S +D+ + A LL A +P +RL+G+ +
Sbjct: 320 TIRGRTVTLKVKFADFQQITRARSAVQPVASRDDLERIALSLLGAAMPFDKGVRLLGVAL 379
Query: 299 TQFNEDKVRAPSDPTQKTL 317
+ + + + PTQ +L
Sbjct: 380 SSLIREGM-SDETPTQFSL 397
>gi|91978101|ref|YP_570760.1| DNA polymerase IV [Rhodopseudomonas palustris BisB5]
gi|91684557|gb|ABE40859.1| DNA-directed DNA polymerase [Rhodopseudomonas palustris BisB5]
Length = 396
Score = 154 bits (390), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 105/304 (34%), Positives = 165/304 (54%), Gaps = 15/304 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR+AMP AR+ CP L+FV F Y S R++F ++ SLDEAYL
Sbjct: 89 ARKFGVRSAMPSVTARRQCPGLVFVKPRFEVYKAISQQIREIFAEHTLVIEPLSLDEAYL 148
Query: 68 DITEVCRERGIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP 126
+TE +GIS +IA +R + E GL SAG++ N+ LAK+ SD KPNGQ+V+
Sbjct: 149 YVTENL--QGISLARDIALAIRARIKTETGLNASAGISYNKFLAKLASDHRKPNGQYVIS 206
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH--STAD 184
+ F+ +LP+ K GIG T GI T ++ +G L + +H
Sbjct: 207 PETGP--AFVEALPVGKFHGIGPATAARFH-ALGIQTGLDI--RGRTLTFLEAHFGKAGA 261
Query: 185 FFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGL 242
++ + G+ R RKS+ +E TFS +TE A+ +L + + + + G
Sbjct: 262 YYYWISRGIDERPVRANRIRKSVGAENTFSQDLTEFDAMAA-ELQPLIDKVWRHCETTGN 320
Query: 243 RGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQ 300
RGRT+TLK+K A FE+ +R+ ++ + ED+ + A LL+A +P+ ++RL+G+ ++
Sbjct: 321 RGRTVTLKVKFADFEIMSRSRSVPTAVGGREDLERLAVGLLQAAMPLPKAVRLLGVSLSS 380
Query: 301 FNED 304
D
Sbjct: 381 LRSD 384
>gi|424744843|ref|ZP_18173126.1| putative DNA polymerase IV [Acinetobacter baumannii WC-141]
gi|422942623|gb|EKU37670.1| putative DNA polymerase IV [Acinetobacter baumannii WC-141]
Length = 351
Score = 154 bits (390), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 104/300 (34%), Positives = 161/300 (53%), Gaps = 11/300 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FG+R+AM ARKLCP+++ + +F KY S +F +Y SLDEAYL
Sbjct: 47 AREFGLRSAMSMTQARKLCPQVVIIEPNFEKYRTVSAQIHSIFQQYTLLIEPLSLDEAYL 106
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+TE ++ S E+A +R ++ GLT SAGVAPN+ LAK+ SD NKPNG V+
Sbjct: 107 DVTENLKQIA-SATEVAMHIREDIFRLTGLTASAGVAPNKFLAKIASDWNKPNGLCVIKP 165
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQK--GSLLCAVFSHSTADF 185
++A TFI LP++KI G+GKVT+ L+ + ++T + LQK ++L F
Sbjct: 166 SQVA--TFIQDLPLKKIPGVGKVTQEKLQQL-QLHTLGD-LQKIEEAVLVHHFGKYGQQL 221
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
+L G+ R R+ IS E TF +AE + ++K+ L R
Sbjct: 222 YLYAQ-GIDHRPVQAERARQQISKETTFDSDFTLVQCQPYWQGLAEKVWQTLEKKQLNAR 280
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELP--VSLRLIGLRVTQFN 302
+ +KLK +F+ + + ++ I S +D+++ +LL + ++P RLIG+ V Q
Sbjct: 281 GVNIKLKLKNFQTLQHSKSFKRPIQSLQDLIQVLFLLLNEMQIPEHFQFRLIGIGVYQLQ 340
>gi|407716219|ref|YP_006837499.1| DNA-directed DNA polymerase protein [Cycloclasticus sp. P1]
gi|407256555|gb|AFT66996.1| DNA-directed DNA polymerase protein [Cycloclasticus sp. P1]
Length = 365
Score = 154 bits (390), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 91/262 (34%), Positives = 144/262 (54%), Gaps = 7/262 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG+ +AMP A +LCP+ IF+P F Y S + ++F +Y + SLDEAYL
Sbjct: 52 ARQFGIHSAMPCSRAYRLCPQAIFIPPRFDAYKAVSKIIHEIFWRYATDVEPLSLDEAYL 111
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-P 126
D++ +G S IAE ++ + E L SAGV+ N+ LAK+ SD++KP+G +V+ P
Sbjct: 112 DVSHSSEYKG-SATRIAEAIKHDIKAETQLIASAGVSYNKFLAKIASDMDKPDGLYVIRP 170
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFF 186
A FI++LPI G+G TE I + GI T ++ K S+ +A++F
Sbjct: 171 EQGEA---FIATLPIGSFYGVGPATE-IKMNKLGIKTGRDLRSKSSVELTKHFGKSAEYF 226
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
+ G+ R RKS+ E TF DK LL KL ++A+ + ++ + +
Sbjct: 227 FQIARGIDHRPVRSTRIRKSLGKETTFKTDVYDKTLLLEKLNQLAQKVFENLAAQQFMAK 286
Query: 246 TLTLKLKTASFEVRTRAVTLQK 267
T+T+K+K A+F+ TR+ + K
Sbjct: 287 TITVKIKYANFKSVTRSYSSTK 308
>gi|152979117|ref|YP_001344746.1| DNA polymerase IV [Actinobacillus succinogenes 130Z]
gi|150840840|gb|ABR74811.1| DNA-directed DNA polymerase [Actinobacillus succinogenes 130Z]
Length = 357
Score = 154 bits (390), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 115/309 (37%), Positives = 163/309 (52%), Gaps = 22/309 (7%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
R+FG R+AMP A KLCP+LI +P T Y S ++F +Y SLDEAYL
Sbjct: 53 VRKFGCRSAMPTAQAVKLCPDLIVLPVRMTLYKQVSQQIHQIFHRYTDIIEPLSLDEAYL 112
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T+ + G S IA+E+R ++++E LT SAG+AP + LAK+ SD NKPNGQFV+
Sbjct: 113 DVTDSGKCCG-SATWIAQEIRQAIFDELHLTASAGIAPLKFLAKIASDQNKPNGQFVINP 171
Query: 128 DRMAVMTFISSLPIRKIGGIGKVT-EHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADF 185
+ V F+ +LP+RKI G+GKVT EH+L G+ TCE++ G S+L F
Sbjct: 172 EN--VTEFVRTLPLRKIPGVGKVTSEHLLE--MGLYTCEDVQHAGLSVLLNRFG-KIGKR 226
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERT-----FSVTEDKALLYRKLAEIA-EMLSADMQK 239
G+ R RKS+ ERT F++ + A+L +E+ +L A
Sbjct: 227 IWDFSHGIDEREVQPHRERKSVGVERTLSQNIFTLEQGMAVLEELCSELKRRILRAKPDI 286
Query: 240 EGLRGRTLTLKLKTASFEVRT---RAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGL 296
R R + +KLK F+V T AV Q+ E S + + S+RL+GL
Sbjct: 287 SLSRYRKMGVKLKFDDFQVTTLEKSAVEFQQ-----ETFATLLSQIWQRAEGRSVRLVGL 341
Query: 297 RVTQFNEDK 305
VT E+K
Sbjct: 342 HVTIPEEEK 350
>gi|261334855|emb|CBH17849.1| DNA polymerase kappa, putative [Trypanosoma brucei gambiense
DAL972]
gi|261334857|emb|CBH17851.1| DNA polymerase kappa, putative [Trypanosoma brucei gambiense
DAL972]
Length = 570
Score = 154 bits (390), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 97/291 (33%), Positives = 156/291 (53%), Gaps = 16/291 (5%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR GVR MPGF+A K+CP L+ +P D Y S++ R++ +YDPN++ LD+ L
Sbjct: 174 ARGRGVRPGMPGFLALKICPNLLLLPPDDDSYYLESNIVRRIVAEYDPNYIVVGLDDFTL 233
Query: 68 DITE-VCRERGISGIE-IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL 125
+++ + R G E +A ELR V+ E LT SAG+ P LAK+ S+INKPNGQ L
Sbjct: 234 EVSAYIERFEGTKTAEDVASELRVRVFGETKLTASAGIGPTAALAKIASNINKPNGQHDL 293
Query: 126 P-NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTAD 184
+ R VMT++ L +R + G+GKVTE +L+ + GI T ++ + LC + ++
Sbjct: 294 NLHTREDVMTYVRDLGLRSVPGVGKVTEALLKGL-GITTLGDIHDRRVELCYILHNNLFR 352
Query: 185 FFLSVGLGL-------GSTNTPQARF-----RKSISSERTFSVTEDKALLYRKLAEIAEM 232
F L +G+ + NT RK+ISSER+F V K L+ + I E
Sbjct: 353 FLLGASIGIMQWPDAATAANTENCEGATGGQRKAISSERSFYVLHSKEQLHEMIYSIFEE 412
Query: 233 LSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL 283
+M++ + R ++L ++ +S+ + +L ++ S + + LL
Sbjct: 413 AYEEMRQNEMLCRQISLLVRWSSYRYQQYTKSLIQHSDDSATLRRAVDGLL 463
>gi|56160428|gb|AAV80828.1| polymerase kappa isoform 2 [Homo sapiens]
Length = 489
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 83/168 (49%), Positives = 111/168 (66%), Gaps = 3/168 (1%)
Query: 77 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 135
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 287 GTSAQEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 345
Query: 136 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 195
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 346 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGS 404
Query: 196 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLR 243
T+ + RKS+S ERTFS Y E+ L+ D+QKE L+
Sbjct: 405 THLTRDGERKSMSVERTFSEINKAEEQYSLCQELCSELAQDLQKERLK 452
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/69 (63%), Positives = 53/69 (76%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFGVRAAMPGFIA++LCP+LI VP +F KY S +++ YDPNFMA SLDEAYL
Sbjct: 143 ARRFGVRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYL 202
Query: 68 DITEVCRER 76
+IT+ ER
Sbjct: 203 NITKHLEER 211
>gi|421113191|ref|ZP_15573639.1| ImpB/MucB/SamB family protein [Leptospira santarosai str. JET]
gi|410801366|gb|EKS07536.1| ImpB/MucB/SamB family protein [Leptospira santarosai str. JET]
Length = 360
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 103/305 (33%), Positives = 166/305 (54%), Gaps = 18/305 (5%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR+AMP A +L P IFV F Y SD R++F +Y SLDE YL
Sbjct: 50 ARKFGVRSAMPCSKAAQLAPRAIFVFPRFEVYKEVSDRIREIFLEYTDRVEMLSLDEGYL 109
Query: 68 DITEVCRERGIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVL 125
D+T ++ I ++IA+E+R+ +++ LT SAGV ++ +AK+ S+ NKPNG VL
Sbjct: 110 DVT--FNKKNIPFAVKIAKEIRSEIFKRTELTASAGVGNSKFIAKLASEKNKPNGLTVVL 167
Query: 126 PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADF 185
P+D V FI LP+ G+GKVT ++++ GI+T +++ K T +
Sbjct: 168 PDD---VTAFIDPLPVGSFHGVGKVTAQKMKEL-GIHTGKDLRTKNINELVQHFGKTGIY 223
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSVTE-DKALLYRKLAEIAEMLSADMQKEGLRG 244
+ + G R RKS+ SE TF + D+ L+R+L EIA ++K G
Sbjct: 224 YYKISRGEDEREVEPFRERKSLGSENTFDQDKTDREDLFRQLREIAVETERRLKKRNFAG 283
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV---------SLRLIG 295
+TLTLK+K F ++TR+ TL + I +++++ A+ L + + ++RL+G
Sbjct: 284 KTLTLKIKFQDFSLKTRSKTLSEPIFNADELYSIAAELFEEFFEIKDGKQTPTKAIRLLG 343
Query: 296 LRVTQ 300
+ ++
Sbjct: 344 INLSH 348
>gi|424917329|ref|ZP_18340693.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Rhizobium leguminosarum bv. trifolii WSM597]
gi|392853505|gb|EJB06026.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Rhizobium leguminosarum bv. trifolii WSM597]
Length = 363
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 102/298 (34%), Positives = 158/298 (53%), Gaps = 9/298 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGV +AMP A++ CP+LIFV F Y S R++F +Y P SLDEAYL
Sbjct: 56 ARKFGVHSAMPSVTAKRKCPDLIFVLPRFDVYKAVSQQIREIFAEYTPLIEPLSLDEAYL 115
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-P 126
D+T + I+ EIA E+R + E GL SAG++ N+ LAK+ SD+NKPNGQ V+ P
Sbjct: 116 DVTHNLKGMEIA-TEIALEIRARIKEVTGLNASAGISYNKFLAKMASDLNKPNGQAVITP 174
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFF 186
+ A F+ +LP++K G+G T + + GI+T + +K + +F
Sbjct: 175 KNGPA---FVEALPVKKFHGVGPATAERMHRL-GIDTGASLKEKSLEFLVEHFGKSGPYF 230
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRK-LAEIAEMLSADMQKEGLRGR 245
+ G+ R RKS+ +E TFS R+ L + E + A + G+ +
Sbjct: 231 YGIARGIDERQVKPNRVRKSVGAEDTFSQDLHTFEPAREGLQPLIEKVWAYCEANGIGAK 290
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQF 301
T+TLK+K A F TR+ T+ + + D+ + S+LL P +RL+G+ ++
Sbjct: 291 TVTLKVKYADFNQITRSKTVPAPLPAIADLEEIISLLLVPIFPPRKGVRLLGVTLSSL 348
>gi|56160430|gb|AAV80829.1| polymerase kappa isoform 3 [Homo sapiens]
Length = 371
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 83/168 (49%), Positives = 111/168 (66%), Gaps = 3/168 (1%)
Query: 77 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 135
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 197 GTSAQEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 255
Query: 136 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 195
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 256 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGS 314
Query: 196 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLR 243
T+ + RKS+S ERTFS Y E+ L+ D+QKE L+
Sbjct: 315 THLTRDGERKSMSVERTFSEINKAEEQYSLCQELCSELAQDLQKERLK 362
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/69 (63%), Positives = 53/69 (76%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFGVRAAMPGFIA++LCP+LI VP +F KY S +++ YDPNFMA SLDEAYL
Sbjct: 53 ARRFGVRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYL 112
Query: 68 DITEVCRER 76
+IT+ ER
Sbjct: 113 NITKHLEER 121
>gi|150377463|ref|YP_001314058.1| DNA polymerase IV [Sinorhizobium medicae WSM419]
gi|150032010|gb|ABR64125.1| DNA-directed DNA polymerase [Sinorhizobium medicae WSM419]
Length = 378
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 97/297 (32%), Positives = 155/297 (52%), Gaps = 7/297 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGV +AMP A++ CP+LIFVP F Y S +F +Y P SLDEAYL
Sbjct: 71 ARKFGVHSAMPSVTAKRKCPDLIFVPHRFEVYRAVSRQIHAIFAEYTPLIEPLSLDEAYL 130
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+TE + ++ EIAEE+R + E GLT SAGV+ N+ LAK+ SD KP+G FV+
Sbjct: 131 DVTENLKGMELA-TEIAEEIRARIRAETGLTASAGVSYNKFLAKIASDQRKPDGLFVITP 189
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
F+ LP++K G+G T ++ + GI T ++ + + +F
Sbjct: 190 KHGP--EFVQMLPVKKFHGVGPATAEKMKRL-GIETGADLKARDLAFLQQHFGKSGPYFY 246
Query: 188 SVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRT 246
+ G+ R RKS+ +E TF D L + + + + +RG+T
Sbjct: 247 WIARGIDGREVKPDRIRKSVGAEDTFREDIHDLETAREGLRPLMDKVWHYCEAGSIRGKT 306
Query: 247 LTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS--LRLIGLRVTQF 301
+TLK+K + F TR+ TL ++S+ ++ + +LL + P + +RL+G+ ++
Sbjct: 307 VTLKVKWSDFTQITRSKTLPAPVASAAEMAQIVDLLLSSIFPAAKGIRLLGVTLSSL 363
>gi|407451872|ref|YP_006723597.1| nucleotidyltransferase/DNA polymerase [Riemerella anatipestifer
RA-CH-1]
gi|403312856|gb|AFR35697.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Riemerella anatipestifer RA-CH-1]
Length = 360
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 95/278 (34%), Positives = 156/278 (56%), Gaps = 7/278 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++GVR+AM +A+K CP++IFV F +Y S+ R +F +Y SLDEAYL
Sbjct: 50 ARKYGVRSAMSSVVAKKKCPQIIFVKPRFHRYKEISEQIRAIFFEYTDLVEPLSLDEAYL 109
Query: 68 DITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP 126
D+T ++GI S IA+E+R ++E GLT SAG++ N+ LAKV SDINKPNGQ +
Sbjct: 110 DVTH--NKKGIDSANLIAKEIRRKIFETTGLTASAGISVNKFLAKVASDINKPNGQKTIH 167
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFF 186
+ V++F+ +LPI + GIG VT + + + GI +++ +K +
Sbjct: 168 PTK--VLSFLENLPIERFYGIGNVTANKMYQL-GIYKGKDLKEKSLEYLITHFGKMGRHY 224
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFSVTED-KALLYRKLAEIAEMLSADMQKEGLRGR 245
+ G+ + R KS+ E T++ D + + ++L +A+ L +K+ ++G+
Sbjct: 225 YDIVRGIHRSEVKPHRIAKSVGVEHTYADDIDTEKDIDQQLIRLAQELYERAEKKQVKGK 284
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL 283
+LTLK+K F + TR+ T Y + E++ + A L
Sbjct: 285 SLTLKIKYKDFSLFTRSKTQDLYFETEEEMYQIARFLW 322
>gi|254293831|ref|YP_003059854.1| DNA-directed DNA polymerase [Hirschia baltica ATCC 49814]
gi|254042362|gb|ACT59157.1| DNA-directed DNA polymerase [Hirschia baltica ATCC 49814]
Length = 360
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 107/291 (36%), Positives = 163/291 (56%), Gaps = 12/291 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR +GVR+AM A+K CP+LIFVP F Y S+ R +F +Y SLDEAYL
Sbjct: 52 AREYGVRSAMASVAAKKRCPDLIFVPPRFDVYKSVSNQIRNIFAQYTHLIEPLSLDEAYL 111
Query: 68 DITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP 126
D+T+ +GI S +IA E+R + +E GLT SAGV+ N+ +AK+ SD NKPNGQ V+P
Sbjct: 112 DVTDNL--KGIESATQIAMEIRAEILKETGLTASAGVSYNKFIAKLASDENKPNGQCVIP 169
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADF 185
+ F++ LPIR+ G+G VT + + GI T ++ + S L F +S AD+
Sbjct: 170 PK--SGEQFVAGLPIRRFYGVGPVTAKKM-ERLGILTGADLKKADLSWLRQNFGNS-ADY 225
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLR 243
+ + G R RKS+ ERT+S + E + +L + ++ +L +++
Sbjct: 226 YYAAARGKDDRIVQPNRIRKSVGVERTYSKDLFEKEEIL-TETEKLITLLWERIERANAV 284
Query: 244 GRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLI 294
G T+ LK+K + F+ TR+ TL+ I+ E + A +LL LP ++ I
Sbjct: 285 GHTIVLKVKFSDFKQITRSHTLEHSITEIEHLDVSAQLLL-GHLPRPIKPI 334
>gi|333378665|ref|ZP_08470395.1| hypothetical protein HMPREF9456_01990 [Dysgonomonas mossii DSM
22836]
gi|332883069|gb|EGK03353.1| hypothetical protein HMPREF9456_01990 [Dysgonomonas mossii DSM
22836]
Length = 353
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 112/300 (37%), Positives = 157/300 (52%), Gaps = 20/300 (6%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARR+GVR+AM A + CP LIFVP F Y S ++F +Y SLDEA+L
Sbjct: 39 ARRYGVRSAMASKTALRKCPHLIFVPARFDVYKSVSRQIMEIFHEYTDLVEPLSLDEAFL 98
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+TE S +IA+E++ + E LT SAGV+ N+ LAK+ SD NKPNG FV+
Sbjct: 99 DVTENNMNIA-SATQIAQEIKQKIREATNLTASAGVSFNKFLAKIASDQNKPNGLFVVKP 157
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFF 186
F+ SL I + G+GKVT ++ + GI T ++ Q+ + L +VF + ++
Sbjct: 158 K--VAEQFVESLAIERFFGVGKVTAKVMHQM-GIKTGWDLKQRSENELVSVFGKAGHIYY 214
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSA-------DMQK 239
+ + R RKSISSE TF D L E+A L A +QK
Sbjct: 215 QN-ARAIDYRPVESQRIRKSISSETTFDRDID------SLDELAVELDAVARDTFDYLQK 267
Query: 240 EGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK-AELPVSLRLIGLRV 298
+ +GRT+TLK+K A F++ TR+ T + E K LLK +L +RLIGL V
Sbjct: 268 KKFKGRTVTLKIKYADFKIITRSRTFADAVEDYELFYKAGFELLKLVDLSPKVRLIGLGV 327
>gi|86360880|ref|YP_472767.1| DNA polymerase IV [Rhizobium etli CFN 42]
gi|86284982|gb|ABC94040.1| DNA-directed DNA polymerase protein [Rhizobium etli CFN 42]
Length = 363
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 102/300 (34%), Positives = 160/300 (53%), Gaps = 13/300 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGV +AMP A++ CP+LIFVP F Y S R++F +Y P SLDEAYL
Sbjct: 56 ARKFGVHSAMPSVTAKRKCPDLIFVPPRFDIYKAVSQQIREIFAEYTPMIEPLSLDEAYL 115
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-P 126
D+T + I+ EIA E+R + GL SAG++ N+ LAK+ SD+NKPNGQ V+ P
Sbjct: 116 DVTHNLKGMEIA-TEIALEIRARIKAITGLNASAGISYNKFLAKMASDLNKPNGQAVITP 174
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH--STAD 184
+ A F+ +LP++K G+G T + + GI+T ++ KG L + H +
Sbjct: 175 RNGPA---FVEALPVKKFHGVGPATAEKMHRL-GIDTGADL--KGKTLEFLVEHFGKSGP 228
Query: 185 FFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRK-LAEIAEMLSADMQKEGLR 243
+F + G+ R RKS+ +E TFS R+ L + E + + G+
Sbjct: 229 YFYGIARGIDERQVKPNRVRKSVGAEDTFSQDLHAYEPAREALQPLIEKVWGYCEANGIG 288
Query: 244 GRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQF 301
+T+ LK+K A F TR+ T+ +++ D+ + +LL P +RL+G+ ++
Sbjct: 289 AKTVMLKVKYADFNQITRSKTVPIPLAAIADLEEIVGLLLAPIFPPRKGIRLLGVSLSSL 348
>gi|410450101|ref|ZP_11304144.1| ImpB/MucB/SamB family protein [Leptospira sp. Fiocruz LV3954]
gi|410016110|gb|EKO78199.1| ImpB/MucB/SamB family protein [Leptospira sp. Fiocruz LV3954]
Length = 360
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 110/327 (33%), Positives = 172/327 (52%), Gaps = 29/327 (8%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR+AMP A +L P IFV F Y SD R++F +Y SLDE YL
Sbjct: 50 ARKFGVRSAMPCSKAAQLAPRAIFVFPRFEVYKEVSDRIREIFLEYTDRVEMLSLDEGYL 109
Query: 68 DITEVCRERGIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVL 125
D+T ++ I ++IA+E+R+ +++ LT SAGV ++ +AK+ S+ NKPNG VL
Sbjct: 110 DVT--FNKKNIPFAVKIAKEIRSEIFKRIELTASAGVGNSKFIAKLASEKNKPNGLTVVL 167
Query: 126 PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADF 185
P+D V FI LPI G+GKVT ++++ GI+T +++ K T +
Sbjct: 168 PDD---VTAFIDPLPIGSFHGVGKVTAQKMKEL-GIHTGKDLRTKNINELVQHFGKTGIY 223
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSVTE-DKALLYRKLAEIAEMLSADMQKEGLRG 244
+ + G R RKS+ SE TF + D+ L+R+L EIA ++K G
Sbjct: 224 YYKISRGEDEREVEPFRERKSLGSENTFDQDKTDREDLFRQLREIAVETERRLKKRNFAG 283
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV---------SLRLIG 295
+TLTLK+K F ++TR+ TL + I +++++ A+ L + + ++RL+G
Sbjct: 284 KTLTLKIKFQDFSLKTRSKTLSEPIFNADELYSIAAELFEEFFEIKDGKQTPTKAIRLLG 343
Query: 296 LRVTQFNEDKVRAPSDPTQKTLTNFMT 322
+ + S PT K + F T
Sbjct: 344 INL-----------SHPTDKEPSLFQT 359
>gi|218961283|ref|YP_001741058.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Candidatus Cloacamonas acidaminovorans]
gi|167729940|emb|CAO80852.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Candidatus Cloacamonas acidaminovorans str. Evry]
Length = 353
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 102/298 (34%), Positives = 160/298 (53%), Gaps = 7/298 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGV + M + A LCPE IF+ F Y S R++F ++ SLDEAYL
Sbjct: 48 ARKFGVHSGMSSYQAWNLCPEAIFIHPHFNLYKKVSHQIREIFYQWTDLVEPLSLDEAYL 107
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+TE + ++IA+ ++ + E+ GLTCSAGV+ N+ LAK+ SD+NKP+G +P
Sbjct: 108 DVTE-NKLGEDDAVKIAKLIKAEILEKTGLTCSAGVSYNKFLAKIGSDLNKPDGLTYIPP 166
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
++ + + F +LPI K GIGKVT L+ GIN ++ + F+
Sbjct: 167 EKASEILF--ALPIEKFYGIGKVTSAKLKKK-GINNGADLYKYELKDLIRLLGKAGHFYY 223
Query: 188 SVGLGLGSTNTPQARFRKSISSERTFSVTEDKA-LLYRKLAEIAEMLSADMQKEGLRGRT 246
V G+ KS+S E TF D L L ++AE LS ++++G+RG
Sbjct: 224 YVVRGIDKREVITEFEPKSLSCETTFYEDIDNLDYLLIILQQLAERLSNRLRQKGIRGNN 283
Query: 247 LTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS--LRLIGLRVTQFN 302
+TLK+K +FE+ TR+ YI+ ++++ + LL A S +RL+GL + + +
Sbjct: 284 ITLKIKYDNFELITRSSNTPSYINKADELFAYGEQLLIANWDSSRKVRLLGLAIGKLD 341
>gi|71756027|ref|XP_828928.1| DNA polymerase kappa [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|70834314|gb|EAN79816.1| DNA polymerase kappa, putative [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
Length = 571
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 100/314 (31%), Positives = 164/314 (52%), Gaps = 24/314 (7%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR G+R MPGF+A K+CP L+ +P DF Y S+ R++ +YDPN+++ LD+ L
Sbjct: 175 ARGRGIRQGMPGFLALKICPNLLILPPDFDAYNEESNTVRRIVAEYDPNYISFGLDDFTL 234
Query: 68 DITE-VCRERGISGIE-IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL 125
+++ + R G E +A ELR V+ E LT SAG+ P LAK+ S+INKPNGQ L
Sbjct: 235 EVSAYIERFEGTKTAEDVASELRVRVFGETKLTASAGIGPTAALAKIASNINKPNGQHDL 294
Query: 126 P-NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTAD 184
+ R VMT++ L +R + G+GKVTE +L+ GI T ++ + LC + ++
Sbjct: 295 NLHTREDVMTYVRDLGLRSVPGVGKVTEALLKG-LGITTLSDIYNRRVELCYILHNNLFR 353
Query: 185 FFLSVGLGL-------GSTNT-----PQARFRKSISSERTFSVTEDKALLYRKLAEIAEM 232
F L +G+ + NT RK+ISSER+ + K + L +
Sbjct: 354 FLLGASIGIMQWPDAATAANTENCEGATGEQRKAISSERSITTPRTKEGMQEMLDTVFNG 413
Query: 233 LSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLR 292
+M+K + R ++L ++ AS+ + +L ++ S + + LL LP + +
Sbjct: 414 AYEEMRKSEIMCRRISLTIRWASYRYQQYTKSLIQHSDDSATLRRAVDGLL---LPHAAK 470
Query: 293 -----LIGLRVTQF 301
L+G+R++
Sbjct: 471 YSEMCLLGVRLSDL 484
>gi|303257690|ref|ZP_07343702.1| ATP-NAD kinase [Burkholderiales bacterium 1_1_47]
gi|302859660|gb|EFL82739.1| ATP-NAD kinase [Burkholderiales bacterium 1_1_47]
Length = 366
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 102/280 (36%), Positives = 153/280 (54%), Gaps = 9/280 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR+AMP +A +LCP LIFVP +Y S ++F +Y S+DEA+L
Sbjct: 52 ARKFGVRSAMPSSVAARLCPNLIFVPGRMDEYKKASAEVFEIFSRYTNLIEQVSIDEAFL 111
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-P 126
D+T+V R+ G + +EIA+ ++ V E GL SAGV+ N+ LAK+ SD KP+G V+ P
Sbjct: 112 DVTDVWRDYGYA-MEIAKLIKEDVRREVGLIISAGVSYNKFLAKIASDWRKPDGLCVIHP 170
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADF 185
N A + FI LP++ I G+G VT + + GI T +++ +K S L F S +
Sbjct: 171 N---AALKFIDRLPVKAIWGVGPVTSQKM-EALGIFTGKDLREKDLSFLVEQFGSSGLSY 226
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKA-LLYRKLAEIAEMLSADMQKEGLRG 244
+ + + R RK +S+E T S E L L+E+ + L ++K G
Sbjct: 227 Y-NFARCIDDRPVRTERIRKQVSAEITLSKDEGNLNKLEDTLSELTDYLMTRLRKNDFLG 285
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK 284
R+LTLK++ +F+ TR T + ILK A LL+
Sbjct: 286 RSLTLKVRFHNFKTITRTQTSNSVFNEKSQILKTAESLLE 325
>gi|354334968|gb|AER23910.1| DNA-directed DNA polymerase [Variovorax sp. HH01]
Length = 397
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 101/298 (33%), Positives = 158/298 (53%), Gaps = 11/298 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGV +AM A KLCP+ I +P DF +Y YS +++ + P +DE Y+
Sbjct: 70 ARQFGVGSAMGLMKAAKLCPQAIILPVDFDEYRRYSRAFKQIILEVAPLMEDRGVDEVYI 129
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D T+V + G +A L+ ++++ GLTCS GVAPN+L+AK+ S+ NKPNG ++
Sbjct: 130 DFTDVPGGQRDGGRSLARLLQKAIFDATGLTCSIGVAPNKLIAKMASEFNKPNGISIVYE 189
Query: 128 DRMAVMTFISSLPIRKIGGIG-KVTEHILRDVFGINTCEEM-LQKGSLLCAVFSHSTADF 185
D + I LP RK+ GIG K E + R FGI T ++ ++ L A F +T +
Sbjct: 190 DDLE--KLIWPLPCRKVNGIGPKADEKLKR--FGIETVGQLAVRDRDWLIANFGKATGAW 245
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFS----VTEDKALLYRKLAEIAEMLSADMQKEG 241
V G S+S E TF D+A L + E ++AD+Q++G
Sbjct: 246 MHEVSWGRDDRPVVTESEPVSMSRETTFDRDLHAVRDRAELGAIFTRLCEQVAADLQRKG 305
Query: 242 LRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK-AELPVSLRLIGLRV 298
G+T+ +KL+ F + TR T++++ ++ I + + LK L LRL+G+RV
Sbjct: 306 YVGKTIGIKLRYDDFRIATRDQTIERFTDDAKTIRQTGGLCLKRVPLERPLRLLGVRV 363
>gi|58580386|ref|YP_199402.1| DNA polymerase IV [Xanthomonas oryzae pv. oryzae KACC 10331]
gi|188578682|ref|YP_001915611.1| DNA polymerase IV [Xanthomonas oryzae pv. oryzae PXO99A]
gi|58424980|gb|AAW74017.1| DNA polymerase IV [Xanthomonas oryzae pv. oryzae KACC 10331]
gi|188523134|gb|ACD61079.1| ImpB/MucB/SamB family [Xanthomonas oryzae pv. oryzae PXO99A]
Length = 369
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 113/302 (37%), Positives = 165/302 (54%), Gaps = 15/302 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FG+R+AMP A +LCP IFVP DF +Y S R++F ++ SLDEAYL
Sbjct: 57 ARTFGIRSAMPAVRAERLCPNAIFVPPDFVRYKAVSRQVREIFHRHTDLVEPLSLDEAYL 116
Query: 68 DITEVCRERGIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP 126
D+T+ + G+ EIA+ +RT + EE LT SAG+APN+ LAK+ SD KP+GQFV+
Sbjct: 117 DVTQA--KTGMQLATEIAQLIRTQIREETELTASAGIAPNKFLAKIASDWRKPDGQFVIA 174
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM-LQKGSLLCAVFSHSTADF 185
R + F+ L + +I G+GKV + L GI T ++ L+ L A F S
Sbjct: 175 PSR--IDAFLLPLKVNRIPGVGKVMDGKL-AALGIVTVADLRLRPLEELQAHFG-SFGQS 230
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLR 243
G+ + +S+SSE TFS ED AL L + +AE ++
Sbjct: 231 LYRRARGIDERPVEPDQDVQSVSSEDTFS--EDLALDALDTHILRLAEKTWLATRRTERI 288
Query: 244 GRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELPVS--LRLIGLRVTQ 300
GRT+ LKLKT++F + TR+ T ++ S E + + A L + ELP RL+G+ ++
Sbjct: 289 GRTVVLKLKTSNFRILTRSCTPEQPPVSQEALAQIALALTRRVELPAQTRYRLVGVGLSG 348
Query: 301 FN 302
F+
Sbjct: 349 FS 350
>gi|260909969|ref|ZP_05916656.1| DNA-directed DNA polymerase IV [Prevotella sp. oral taxon 472 str.
F0295]
gi|260635919|gb|EEX53922.1| DNA-directed DNA polymerase IV [Prevotella sp. oral taxon 472 str.
F0295]
Length = 365
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 107/312 (34%), Positives = 160/312 (51%), Gaps = 25/312 (8%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++GV +AM G A+++CPELI +P +F KY S +++F +Y SLDEAYL
Sbjct: 53 ARKYGVHSAMSGVQAKRMCPELILIPPNFKKYKQVSQQVQEIFHRYTDIVEPLSLDEAYL 112
Query: 68 DITEVCRERGIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP 126
D+T+ ++GI ++IA+ ++ +Y+E LT SAGV+ N+ LAKV SD KPNG V+
Sbjct: 113 DVTQ--NKQGIELAVDIAKRIKQEIYDELHLTASAGVSFNKFLAKVASDFRKPNGITVIH 170
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFF 186
R M FI LPI G+G T + + N + L VF + ++
Sbjct: 171 PSR--AMQFIDKLPITDFWGVGHKTAETMHAMGIFNGADLRQLSRLRLRQVFGKAGETYY 228
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFSVTEDKA-------LLYRKLAEIAEMLSADMQK 239
+ + RKS+ ERTF ED + LYR + E+ E L ++
Sbjct: 229 -NFARAIDPRPVEPHWVRKSVGCERTFE--EDSSNPNVLLTELYRLVLELVERL----KR 281
Query: 240 EGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK----AELPVSLRLIG 295
+GRTLTLK+K F TR+ T + E+IL A LL + P+ RL+G
Sbjct: 282 NDFKGRTLTLKVKFHDFTQITRSRTALHILRKKEEILPIAKALLSDVDYSSHPI--RLLG 339
Query: 296 LRVTQFNEDKVR 307
++V+ N+ R
Sbjct: 340 VQVSNINDGPHR 351
>gi|187735823|ref|YP_001877935.1| DNA-directed DNA polymerase [Akkermansia muciniphila ATCC BAA-835]
gi|254781918|sp|B2UKN1.1|DPO4_AKKM8 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|187425875|gb|ACD05154.1| DNA-directed DNA polymerase [Akkermansia muciniphila ATCC BAA-835]
Length = 359
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 109/304 (35%), Positives = 158/304 (51%), Gaps = 13/304 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFGVR+AMP A KLCP LIF Y S +F +Y SLDEA+L
Sbjct: 49 ARRFGVRSAMPSMKALKLCPHLIFTRNRMDVYKAVSAQIHAIFHRYTDLVEPLSLDEAFL 108
Query: 68 DITEVCRERGIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP 126
D+TE + GI ++IA ++ + E LT SAGV+ N+ LAK+ SD KP+G F +
Sbjct: 109 DVTE--NKPGIPLAVDIARRIKKEIRRELHLTASAGVSYNKFLAKIASDYRKPDGLFTIH 166
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFF 186
R FI++LPI G+G T +R + N + + L F + A F+
Sbjct: 167 PSRAE--KFIAALPIEAFWGVGHATAERMRALSITNGAQLRARDKDFLVRHFGKTGAIFY 224
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTF--SVTEDKALLYRKLAEIAEMLSADMQKEGLRG 244
+ G+ +R RKS+ E T+ +VT +AL R L +AE L+ + + G RG
Sbjct: 225 -NFARGVDDRPVEPSRMRKSVGCEETYRENVTRAEALEQR-LPLLAEELAGRLARSGFRG 282
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV---SLRLIGLRVTQF 301
TLTLK+K F +TR T+ + ++ E IL A L++ EL + RL+GL V+
Sbjct: 283 NTLTLKVKFPDFVQKTRCATVPEILTEKEGILPLARTLME-ELDSGDRTFRLLGLSVSHP 341
Query: 302 NEDK 305
E++
Sbjct: 342 QEEQ 345
>gi|260220684|emb|CBA28482.1| hypothetical protein Csp_A07430 [Curvibacter putative symbiont of
Hydra magnipapillata]
Length = 412
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 101/298 (33%), Positives = 155/298 (52%), Gaps = 9/298 (3%)
Query: 7 SARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAY 66
+AR+FGV +AM A KLCP+ I +P DF +Y +YS + + P +DE Y
Sbjct: 77 AARQFGVGSAMGLMKAAKLCPQAILLPVDFAQYRHYSQRFKAIITDIAPVMENRGVDEVY 136
Query: 67 LDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP 126
+D T V + G +A ++ +++++ GLTCS GVAPN+LLAK+ S+ NKPNG ++
Sbjct: 137 IDFTHVPGGQRQGGRVLARLIQKAIFDDTGLTCSVGVAPNKLLAKMASEFNKPNGIAIVH 196
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADF 185
+ M I L RKI GIG + L+ GI T ++ K L F +
Sbjct: 197 ESDLEPM--IWPLACRKINGIGPKADEKLKK-HGIETIGQLAAKELQWLMDTFGPRAGAW 253
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFS----VTEDKALLYRKLAEIAEMLSADMQKEG 241
+ G S+S E TF DKA L + E ++AD+Q++G
Sbjct: 254 LHAAAHGQDDRPVETESEPVSMSRETTFDRDLHAVRDKAELGAIFTRLCEQVAADLQRKG 313
Query: 242 LRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK-AELPVSLRLIGLRV 298
RG+T+ +KL+ F+ TR +T+ + + ++DI + A + LK A L LRL+G+RV
Sbjct: 314 YRGKTVGIKLRFDDFKSVTRDITVDYFTADAKDIRRIAGLCLKRAPLQKRLRLLGVRV 371
>gi|429770091|ref|ZP_19302173.1| putative DNA polymerase IV [Brevundimonas diminuta 470-4]
gi|429185547|gb|EKY26522.1| putative DNA polymerase IV [Brevundimonas diminuta 470-4]
Length = 359
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 103/302 (34%), Positives = 162/302 (53%), Gaps = 13/302 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR+AMP A + CP+LIF P F Y S VF Y SLDEAYL
Sbjct: 52 ARKFGVRSAMPSSTALRRCPQLIFTPPRFEIYRAVSAQIHAVFADYTDLIEPLSLDEAYL 111
Query: 68 DITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP 126
D+T RG+ + AEE+R + E GLT SAG++ N+ LAK+ SD KPNGQFV+P
Sbjct: 112 DVT--ANRRGLPTASATAEEIRDRILEATGLTASAGISYNKFLAKLASDQRKPNGQFVVP 169
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVT-EHILRDVFGINTCEEMLQKGSLLCAVFSHSTADF 185
R F+ LP+++ G+G VT E + R GI T ++ + + +
Sbjct: 170 PGRGE--AFVQDLPVKRFHGVGPVTAEKMTR--LGIETGADLRHQSLAFLQHHFGKSGPW 225
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLR 243
+ ++ G R RKS SE TF+ + E +A+ + E+A+ + A +K G
Sbjct: 226 YYAIARGEDHRPVNPDRERKSSGSETTFARDLVEPEAI-EAGVEEMADEVWAWCEKAGSL 284
Query: 244 GRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS--LRLIGLRVTQF 301
GRT+T+K+K A F+ TR+ + + ++S + + + +L ++ P + +RL+G+ ++
Sbjct: 285 GRTVTVKVKWADFQQSTRSRSFAEPVASKARLREISRLLARSLYPPTKGVRLVGVTISNL 344
Query: 302 NE 303
+
Sbjct: 345 EK 346
>gi|385855494|ref|YP_005902007.1| DNA polymerase IV [Neisseria meningitidis M01-240355]
gi|325204435|gb|ADY99888.1| DNA polymerase IV [Neisseria meningitidis M01-240355]
Length = 352
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 103/299 (34%), Positives = 161/299 (53%), Gaps = 17/299 (5%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+F + +AM A++LCP+ ++VP F Y S VF +Y SLDEAYL
Sbjct: 49 ARQFELHSAMSVATAKRLCPQAVYVPPHFDLYRQVSAQIHAVFRRYTDLIEPLSLDEAYL 108
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T + + E+A+E+R +++ E GLT SAG+APN+ LAK+ SD KPNGQFVLP
Sbjct: 109 DVTRNFKNIPYAS-EVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPP 167
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADF 185
+ VM F+ +LP+ KI G+GKVT ++ + G+ T ++ +G LL +H
Sbjct: 168 YK--VMAFLETLPLGKIPGVGKVTLKKMQSL-GMQTAGDLRRFDRGELL----NHFGRYG 220
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLR 243
+ L G+ P R+ + ++ ED L L +AE L + ++ +
Sbjct: 221 YRLYDLARGTDERPVKAERERLQISTEITLPEDLPLEQAAGHLPHLAEDLWRQITRKNVE 280
Query: 244 GRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV----SLRLIGLRV 298
+++TLKLKT F + TR +T + +L+ A +L+ A +P + RLIG+ V
Sbjct: 281 AQSVTLKLKTYDFRIITRTLTYSSVLPDCAALLQAAQMLM-ARVPPQTEDAFRLIGIGV 338
>gi|333375949|ref|ZP_08467746.1| DNA-directed DNA polymerase IV [Kingella kingae ATCC 23330]
gi|332969247|gb|EGK08275.1| DNA-directed DNA polymerase IV [Kingella kingae ATCC 23330]
Length = 363
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 104/300 (34%), Positives = 159/300 (53%), Gaps = 15/300 (5%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG+R+AMP A++LCP+ +FVP F Y S +F Y SLDEAYL
Sbjct: 64 ARQFGLRSAMPVATAKRLCPQAVFVPPHFDLYRQVSQQIHTIFQCYTDLIEPISLDEAYL 123
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-P 126
D+T+ ++ + ++A+++R + + GLT SAG+APN+ LAK+ SD KPNGQFV+ P
Sbjct: 124 DVTQNKQQLPYAS-QVAKQIRAEILAQTGLTASAGIAPNKFLAKIASDWRKPNGQFVIQP 182
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADF- 185
++ + F+ LP+ K+ G+GK T ++ G T ++ Q A H F
Sbjct: 183 HE---IEYFLRDLPVGKVWGVGKKTLLKMQQ-HGWQTIGDLRQVSR---AELVHWFGKFG 235
Query: 186 --FLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLR 243
+ G+ R R IS+E T S +K + L +++ L MQ++ ++
Sbjct: 236 YRLYDLARGVDERPVQAERERLQISTEMTLSDNLNKQAISMYLDNLSKDLWQQMQRKKMQ 295
Query: 244 GRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELP-VSLRLIGLRVTQFN 302
TLTLKLK+ F+V TR+ T + E L A++ L A +P RLIGL V+
Sbjct: 296 AYTLTLKLKSTEFQVFTRSQTYSAAL--PEQGLLQAALQLIARMPDGEFRLIGLGVSHLQ 353
>gi|93117307|gb|ABE99571.1| DinB [Neisseria meningitidis]
Length = 329
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 99/285 (34%), Positives = 156/285 (54%), Gaps = 13/285 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG+ +AM A++LCP+ ++VP F Y S VF +Y SLDEAYL
Sbjct: 43 ARQFGLHSAMSVATAKRLCPQAVYVPPHFDLYRQVSAQIHAVFRRYTDLIEPLSLDEAYL 102
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T + + E+A+E+R +++ E GLT SAG+APN+ LAK+ SD KPNGQFVLP
Sbjct: 103 DVTRNFKNIPYAS-EVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPP 161
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADF 185
+ VM F+ +LP+ KI G+GKVT ++ + G+ T ++ ++G LL +H
Sbjct: 162 HK--VMAFLETLPLGKIPGVGKVTLKKMQSL-GMRTAGDLRRFERGELL----NHFGRYG 214
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLR 243
+ L G+ P R+ + ++ ED L L +AE L + ++ +
Sbjct: 215 YRLYDLVRGTDERPVKAERERLQISTEITLPEDLPLEQAAGHLPHLAEDLWRQITRKNVE 274
Query: 244 GRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELP 288
+++TLKLKT F + TR +T + +L+ A +L+ A +P
Sbjct: 275 AQSVTLKLKTYDFRIITRTLTYSSVLPDCAALLQAAQMLM-ARVP 318
>gi|262280632|ref|ZP_06058415.1| nucleotidyltransferase/DNA polymerase [Acinetobacter calcoaceticus
RUH2202]
gi|262257532|gb|EEY76267.1| nucleotidyltransferase/DNA polymerase [Acinetobacter calcoaceticus
RUH2202]
Length = 351
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 104/300 (34%), Positives = 160/300 (53%), Gaps = 11/300 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FG+R+AM ARKLCP+++ + +F KY S +F +Y SLDEAYL
Sbjct: 47 AREFGLRSAMSMSQARKLCPQVVIIEPNFEKYRTVSAQIHSIFQQYTLLIEPLSLDEAYL 106
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+TE ++ S E+A +R ++ GLT SAGVAPN+ LAK+ SD NKPNG V+
Sbjct: 107 DVTENLKQIA-SATEVAMHIREDIFRLTGLTASAGVAPNKFLAKIASDWNKPNGLCVIKP 165
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQK--GSLLCAVFSHSTADF 185
++A FI LP++KI G+GKVT+ L+ + ++T + LQK ++L F
Sbjct: 166 SQVA--NFIQDLPLKKIPGVGKVTQEKLQQL-QLHTLGD-LQKIEEAILVHHFGKYGQQL 221
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
+L G+ R R+ IS E TF A +AE + ++K+ L R
Sbjct: 222 YL-YAQGIDHRPVQAERARQQISKETTFDSDFTLAQCQPYWQGLAEKVWQSLEKKQLNAR 280
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELP--VSLRLIGLRVTQFN 302
+ +KLK +F+ + + ++ I S D+++ +LL + ++P RLIG+ V Q
Sbjct: 281 GVNVKLKLKNFQTLQHSKSFKRPIQSLHDLIQVLFLLLNEMQIPEHFQFRLIGIGVYQLQ 340
>gi|21750080|dbj|BAC03714.1| unnamed protein product [Homo sapiens]
Length = 372
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 84/174 (48%), Positives = 113/174 (64%), Gaps = 3/174 (1%)
Query: 77 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 135
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R A M F
Sbjct: 197 GTSAQEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAGMDF 255
Query: 136 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 195
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 256 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGS 314
Query: 196 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTL 249
T+ + RKS+S ERTFS Y E+ L+ D+QKE L+ + L L
Sbjct: 315 THLTRDGERKSMSVERTFSEINKAEEQYSLCQELCSELAQDLQKERLKKKYLPL 368
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/69 (63%), Positives = 53/69 (76%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFGVRAAMPGFIA++LCP+LI VP +F KY S +++ YDPNFMA SLDEAYL
Sbjct: 53 ARRFGVRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYL 112
Query: 68 DITEVCRER 76
+IT+ ER
Sbjct: 113 NITKHLEER 121
>gi|256822627|ref|YP_003146590.1| DNA-directed DNA polymerase [Kangiella koreensis DSM 16069]
gi|256796166|gb|ACV26822.1| DNA-directed DNA polymerase [Kangiella koreensis DSM 16069]
Length = 369
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 93/226 (41%), Positives = 127/226 (56%), Gaps = 6/226 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR +GVR+AMP AR+LCP LI VP +F KY + S + R +F +Y SLDEAYL
Sbjct: 58 ARSYGVRSAMPSAYARRLCPGLIIVPPNFDKYRHDSKVIRDIFAQYTDLIEPLSLDEAYL 117
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T+ C E S IA+ +R ++E+ LT SAGVAPN+ LAK+ SD NKPNGQFVL
Sbjct: 118 DVTD-CTEYKGSATYIAQAIRYQIFEKLQLTASAGVAPNKFLAKIASDWNKPNGQFVLTP 176
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
D V F+ LP+ KI G+GK T + + GI TC+E+ + L + S
Sbjct: 177 DE--VEGFVERLPVNKIHGVGKKTAEKFQRM-GIETCKELREVDLLTLSKTFGSFGQRLY 233
Query: 188 SVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEML 233
+ G+ + RKS+S E T+ +D L L E+ +L
Sbjct: 234 ELSRGIDNRKVITHYPRKSLSVENTYD--QDLVTLEECLEELPHLL 277
>gi|93117309|gb|ABE99572.1| DinB [Neisseria meningitidis]
Length = 335
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 99/285 (34%), Positives = 156/285 (54%), Gaps = 13/285 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG+ +AM A++LCP+ ++VP F Y S VF +Y SLDEAYL
Sbjct: 49 ARQFGLHSAMSVATAKRLCPQAVYVPPHFDLYRQVSAQIHAVFRRYTDLIEPLSLDEAYL 108
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T + + E+A+E+R +++ E GLT SAG+APN+ LAK+ SD KPNGQFVLP
Sbjct: 109 DVTRNFKNIPYAS-EVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPP 167
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADF 185
+ VM F+ +LP+ KI G+GKVT ++ + G+ T ++ ++G LL +H
Sbjct: 168 HK--VMAFLETLPLGKIPGVGKVTLKKMQSL-GMRTAGDLRRFERGELL----NHFGRYG 220
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLR 243
+ L G+ P R+ + ++ ED L L +AE L + ++ +
Sbjct: 221 YRLYDLVRGTDERPVKAERERLQISTEITLPEDLPLEQAAGHLPHLAEDLWRQITRKNVE 280
Query: 244 GRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELP 288
+++TLKLKT F + TR +T + +L+ A +L+ A +P
Sbjct: 281 AQSVTLKLKTYDFRIITRTLTYSSVLPDCAALLQAAQMLM-ARVP 324
>gi|224060808|ref|XP_002300272.1| predicted protein [Populus trichocarpa]
gi|222847530|gb|EEE85077.1| predicted protein [Populus trichocarpa]
Length = 201
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 98/208 (47%), Positives = 124/208 (59%), Gaps = 23/208 (11%)
Query: 347 IDDKETSVSLDVSETNNYEFGDPVCDNSLPDLNDENCSFSNKISEVEKIHE--------- 397
+++ E S S++ E +Y DP+ N+L DLN +C+ ++ + E EKIHE
Sbjct: 1 MNNMEGSFSIESHELQHYGIRDPLASNNLEDLNVHHCTSTDSV-EAEKIHEPSSNKIADK 59
Query: 398 -------NEVSQLLEGNSLVLRQEEGSCCDGVEEVDKDITPDNKVGTSSNQKDQFIWLDD 450
EVSQ E + Q EG D + +V N+ SS QKD+ +W+DD
Sbjct: 60 VITKDMAGEVSQWKESGLSLPGQLEGGSPDRMNQV----IMHNEAVFSSEQKDELVWVDD 115
Query: 451 YKCSLCGTEMPPSFIEERQEHSDFHLAERLQKEESGSDLRILTHRERCVRTQRDHIASHR 510
YKCSLCG EMPP F EERQEHSDFHLAERLQK+ES D R R+R V Q+DHI+S
Sbjct: 116 YKCSLCGIEMPPYFDEERQEHSDFHLAERLQKDESRIDSRTSALRQRSV--QKDHISSQS 173
Query: 511 KRKKQKLFEKEGTHIPIDMFFAKRNRNF 538
KRKK+K KEG H+ IDMFFAK N NF
Sbjct: 174 KRKKRKPSPKEGGHLSIDMFFAKSNLNF 201
>gi|322434446|ref|YP_004216658.1| DNA-directed DNA polymerase [Granulicella tundricola MP5ACTX9]
gi|321162173|gb|ADW67878.1| DNA-directed DNA polymerase [Granulicella tundricola MP5ACTX9]
Length = 368
Score = 154 bits (388), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 113/290 (38%), Positives = 159/290 (54%), Gaps = 33/290 (11%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFGVR+AMP A +LCPE IFVP DFT+Y S R++F ++ SLDEAYL
Sbjct: 62 ARRFGVRSAMPAVTAERLCPEAIFVPPDFTRYKAVSRAVREIFERHTDLVEPLSLDEAYL 121
Query: 68 DITEVCRERGIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL- 125
D+TE + G++ +A+ +R + EE LT SAGVAPN+ LAK+ SD KP+G FV+
Sbjct: 122 DVTE--NKLGLATATRVAKMIREQIREELNLTASAGVAPNKFLAKIASDWKKPDGLFVIQ 179
Query: 126 PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTAD- 184
P++ V F+ LP+ +I G+GKVTE ++ V GI T ++ H T +
Sbjct: 180 PHE---VQGFLMPLPVGRIPGVGKVTEERMKSV-GIATVGDL--------HAMDHPTLEQ 227
Query: 185 FFLSVG-----LGLGSTNTPQA--RFRKSISSERTF----SVTEDKALLYRKLAEIAEML 233
F G L G P R KS+S+E TF + E + L+ R+LAE +
Sbjct: 228 HFGRYGRRLYELARGVDENPVVANRSSKSLSAEDTFEKDIPLAETEPLV-RRLAEKVWLA 286
Query: 234 SADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL 283
S ++ RT+ LKLKT F TR++T +S+E +L +V L
Sbjct: 287 S---RQNARMARTVVLKLKTKEFSTLTRSLTPLAMPTSAE-MLGDVAVFL 332
>gi|407473475|ref|YP_006787875.1| DNA polymerase IV [Clostridium acidurici 9a]
gi|407049983|gb|AFS78028.1| DNA polymerase IV [Clostridium acidurici 9a]
Length = 339
Score = 154 bits (388), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 102/300 (34%), Positives = 171/300 (57%), Gaps = 17/300 (5%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVF-CKYDPNFM--AASLDE 64
ARR+GV +AMPGFIAR+ CP F+P +Y +++R+VF Y+ + S+DE
Sbjct: 39 ARRYGVHSAMPGFIARQRCPNGQFLPVRMERY---KEVSRQVFGILYEIADLIEPVSIDE 95
Query: 65 AYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFV 124
AYLD++ + + + +EI EE++ V +E GLT S G++ N+ LAK+ SD NKPNG +
Sbjct: 96 AYLDVSNIEK----NPLEIVEEIKYKVLKETGLTMSRGISYNKFLAKLASDWNKPNGIKI 151
Query: 125 LPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHSTA 183
+ + V + L + + GIGK + L ++ GI T +E+++ L F S
Sbjct: 152 ITKE--MVPDILLPLSVSSVHGIGKKSSQKLNNI-GIYTIKELMRLPEDFLVDFFGKSGR 208
Query: 184 DFFLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGL 242
+ + + G+ + + RKSI ERTF+ T++K +L L + + L ++ + +
Sbjct: 209 EIYNRIR-GIDNRTVNISSERKSIGVERTFTNHTKNKEILQEYLYKFSLELELSLKSKEM 267
Query: 243 RGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK-AELPVSLRLIGLRVTQF 301
+ +T+TLK+K +F +TR +TL +I+SS++I + LLK + +RLIGL V+
Sbjct: 268 QAKTITLKIKDTNFRTQTRGITLSNHITSSKEIFNISKNLLKEVSISADIRLIGLSVSNL 327
>gi|418743619|ref|ZP_13299980.1| ImpB/MucB/SamB family protein [Leptospira santarosai str. CBC379]
gi|410795642|gb|EKR93537.1| ImpB/MucB/SamB family protein [Leptospira santarosai str. CBC379]
Length = 360
Score = 154 bits (388), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 110/327 (33%), Positives = 171/327 (52%), Gaps = 29/327 (8%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR+AMP A +L P IFV F Y SD R++F +Y SLDE YL
Sbjct: 50 ARKFGVRSAMPCSKAAQLAPRAIFVFPRFEVYKEVSDRIREIFLEYTDRVEMLSLDEGYL 109
Query: 68 DITEVCRERGIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVL 125
D+T ++ I ++IA+E+R+ +++ LT SAGV ++ +AK+ S+ NKPNG VL
Sbjct: 110 DVT--FNKKNIPFAVKIAKEIRSEIFKRTELTASAGVGNSKFIAKLASEKNKPNGLTVVL 167
Query: 126 PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADF 185
P+D V FI LPI G+GKVT ++ + GI+T +++ K T +
Sbjct: 168 PDD---VTAFIDPLPIGSFHGVGKVTAQKMKKL-GIHTGKDLRTKNINELVQHFGKTGIY 223
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSVTE-DKALLYRKLAEIAEMLSADMQKEGLRG 244
+ + G R RKS+ SE TF + D+ L+R+L EIA ++K G
Sbjct: 224 YYKISRGEDEREVEPFRERKSLGSENTFDQDKTDREDLFRQLREIAVETERRLKKRNFAG 283
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV---------SLRLIG 295
+TLTLK+K F ++TR+ TL + I +++++ A+ L + + ++RL+G
Sbjct: 284 KTLTLKIKFQDFSLKTRSKTLSEPIFNADELYSIAAELFEEFFEIKDGKQTPTKAIRLLG 343
Query: 296 LRVTQFNEDKVRAPSDPTQKTLTNFMT 322
+ + S PT K + F T
Sbjct: 344 INL-----------SHPTDKEPSLFQT 359
>gi|422002069|ref|ZP_16349308.1| DNA polymerase IV [Leptospira santarosai serovar Shermani str. LT
821]
gi|417259281|gb|EKT88659.1| DNA polymerase IV [Leptospira santarosai serovar Shermani str. LT
821]
Length = 360
Score = 154 bits (388), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 102/304 (33%), Positives = 164/304 (53%), Gaps = 16/304 (5%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR+AMP A +L P IFV F Y SD R++F +Y SLDE YL
Sbjct: 50 ARKFGVRSAMPCSKAAQLAPRAIFVFPRFEVYKEVSDRIREIFLEYTDRVEMLSLDEGYL 109
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLP 126
D+T ++ ++IA+E+R+ +++ LT SAGV ++ +AK+ S+ NKPNG VLP
Sbjct: 110 DVT-FNKKNMPFAVKIAKEIRSEIFKRTELTASAGVGNSKFIAKLASEKNKPNGLTVVLP 168
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFF 186
+D V FI LP+ G+GKVT ++ + GI+T +++ K T ++
Sbjct: 169 DD---VTAFIDPLPVGSFHGVGKVTAQKMKKL-GIHTGKDLRTKNINELVQHFGKTGIYY 224
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFSVTE-DKALLYRKLAEIAEMLSADMQKEGLRGR 245
+ G R RKS+ SE TF + D+ L+R+L EIA ++K G+
Sbjct: 225 YKISRGEDEREVEPFRERKSLGSENTFDQDKTDREDLFRQLREIAVETERRLKKRNFAGK 284
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV---------SLRLIGL 296
TLTLK+K F ++TR+ TL + I +++++ A+ L + + ++RL+G+
Sbjct: 285 TLTLKIKFQDFSLKTRSKTLSEPIFNADELYSIAAELFEEFFEIKDGKQTSTKAIRLLGI 344
Query: 297 RVTQ 300
++
Sbjct: 345 NLSH 348
>gi|93117315|gb|ABE99575.1| DinB [Neisseria meningitidis]
gi|93117317|gb|ABE99576.1| DinB [Neisseria meningitidis]
Length = 336
Score = 154 bits (388), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 99/285 (34%), Positives = 156/285 (54%), Gaps = 13/285 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG+ +AM A++LCP+ ++VP F Y S VF +Y SLDEAYL
Sbjct: 49 ARQFGLHSAMSVATAKRLCPQAVYVPPHFDLYRQVSAQIHAVFRRYTDLIEPLSLDEAYL 108
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T + + E+A+E+R +++ E GLT SAG+APN+ LAK+ SD KPNGQFVLP
Sbjct: 109 DVTRNFKNIPYAS-EVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPP 167
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADF 185
+ VM F+ +LP+ KI G+GKVT ++ + G+ T ++ ++G LL +H
Sbjct: 168 HK--VMAFLETLPLGKIPGVGKVTLKKMQSL-GMRTAGDLRRFERGELL----NHFGRYG 220
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLR 243
+ L G+ P R+ + ++ ED L L +AE L + ++ +
Sbjct: 221 YRLYDLVRGTDERPVKAERERLQISTEITLPEDLPLEQAAGHLPHLAEDLWRQITRKNVE 280
Query: 244 GRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELP 288
+++TLKLKT F + TR +T + +L+ A +L+ A +P
Sbjct: 281 AQSVTLKLKTYDFRIITRTLTYSSVLPDCAALLQAAQMLM-ARVP 324
>gi|418753975|ref|ZP_13310210.1| ImpB/MucB/SamB family protein [Leptospira santarosai str. MOR084]
gi|409965705|gb|EKO33567.1| ImpB/MucB/SamB family protein [Leptospira santarosai str. MOR084]
Length = 360
Score = 154 bits (388), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 109/327 (33%), Positives = 171/327 (52%), Gaps = 29/327 (8%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR+AMP A +L P IFV F Y SD R++F +Y SLDE YL
Sbjct: 50 ARKFGVRSAMPCSKAAQLAPRAIFVFPRFEVYKEVSDRIREIFLEYTDRVEMLSLDEGYL 109
Query: 68 DITEVCRERGIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVL 125
D+T ++ I ++IA+E+R+ +++ LT SAGV ++ +AK+ S+ NKPNG VL
Sbjct: 110 DVT--FNKKNIPFAVKIAKEIRSEIFKRTELTASAGVGNSKFIAKLASEKNKPNGLTVVL 167
Query: 126 PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADF 185
P+D V FI LP+ G+GKVT ++ + GI+T +++ K T +
Sbjct: 168 PDD---VTAFIDPLPVGSFHGVGKVTAQKMKKL-GIHTGKDLRTKNINELVQHFGKTGIY 223
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSVTE-DKALLYRKLAEIAEMLSADMQKEGLRG 244
+ + G R RKS+ SE TF + D+ L+R+L EIA ++K G
Sbjct: 224 YYKISRGEDEREVEPFRERKSLGSENTFDQDKTDREDLFRQLREIAVETERRLKKRNFAG 283
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV---------SLRLIG 295
+TLTLK+K F ++TR+ TL + I +++++ A+ L + + ++RL+G
Sbjct: 284 KTLTLKIKFQDFSLKTRSKTLSEPIFNADELYSIAAELFEEFFEIKDGKQTSTKAIRLLG 343
Query: 296 LRVTQFNEDKVRAPSDPTQKTLTNFMT 322
+ + S PT K + F T
Sbjct: 344 INL-----------SHPTDKEPSLFQT 359
>gi|393719670|ref|ZP_10339597.1| DNA polymerase IV [Sphingomonas echinoides ATCC 14820]
Length = 361
Score = 154 bits (388), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 102/291 (35%), Positives = 146/291 (50%), Gaps = 6/291 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FGVR+AMP A + CP+L+FVP F Y S R +F Y SLDEAYL
Sbjct: 56 ARAFGVRSAMPSVTALRRCPDLVFVPPRFEAYRAVSAQIRAIFDDYTDLVEPLSLDEAYL 115
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+TE G S IAE++R + E LT SAGV+ N+ +AK+ SD NKP+G V+
Sbjct: 116 DVTEDRHGLG-SARAIAEQIRARIKAETALTASAGVSYNKFIAKLASDQNKPDGLCVISP 174
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
A F++SLP+++ G+G VT + GI T ++ ++ S D+
Sbjct: 175 RHGA--AFVASLPVKRFHGVGPVTARRM-AALGIETGADLRERPLAFLHAHFGSYGDYLY 231
Query: 188 SVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRT 246
G+ R KS+ +ERTF A L+ L + E + + RGRT
Sbjct: 232 GAARGVDHRPVRSERPSKSVGAERTFETDLSAPADLHAALDRVGEAAWVRIDRHSARGRT 291
Query: 247 LTLKLKTASFEVRTRAVTLQKYISSSEDI-LKHASVLLKAELPVSLRLIGL 296
+TLKL+ + F TRA +L + + HA + LP+ +RL+GL
Sbjct: 292 VTLKLRFSDFRTITRARSLNSVVDRDAFFAIGHALLDAHLPLPLGVRLLGL 342
>gi|84622350|ref|YP_449722.1| DNA polymerase IV [Xanthomonas oryzae pv. oryzae MAFF 311018]
gi|123523174|sp|Q2P7M9.1|DPO4_XANOM RecName: Full=DNA polymerase IV; Short=Pol IV
gi|84366290|dbj|BAE67448.1| DNA polymerase IV [Xanthomonas oryzae pv. oryzae MAFF 311018]
Length = 359
Score = 154 bits (388), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 113/302 (37%), Positives = 165/302 (54%), Gaps = 15/302 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FG+R+AMP A +LCP IFVP DF +Y S R++F ++ SLDEAYL
Sbjct: 47 ARTFGIRSAMPAVRAERLCPNAIFVPPDFVRYKAVSRQVREIFHRHTDLVEPLSLDEAYL 106
Query: 68 DITEVCRERGIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP 126
D+T+ + G+ EIA+ +RT + EE LT SAG+APN+ LAK+ SD KP+GQFV+
Sbjct: 107 DVTQA--KTGMQLATEIAQLIRTQIREETELTASAGIAPNKFLAKIASDWRKPDGQFVIA 164
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM-LQKGSLLCAVFSHSTADF 185
R + F+ L + +I G+GKV + L GI T ++ L+ L A F S
Sbjct: 165 PSR--IDAFLLPLKVNRIPGVGKVMDGKL-AALGIVTVADLRLRPLEELQAHFG-SFGQS 220
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLR 243
G+ + +S+SSE TFS ED AL L + +AE ++
Sbjct: 221 LYRRARGIDERPVEPDQDVQSVSSEDTFS--EDLALDALDTHILRLAEKTWLATRRTERI 278
Query: 244 GRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELPVS--LRLIGLRVTQ 300
GRT+ LKLKT++F + TR+ T ++ S E + + A L + ELP RL+G+ ++
Sbjct: 279 GRTVVLKLKTSNFRILTRSCTPEQPPVSQEALAQIALALTRRVELPAQTRYRLVGVGLSG 338
Query: 301 FN 302
F+
Sbjct: 339 FS 340
>gi|302875636|ref|YP_003844269.1| DNA-directed DNA polymerase [Clostridium cellulovorans 743B]
gi|307688072|ref|ZP_07630518.1| DNA polymerase IV [Clostridium cellulovorans 743B]
gi|302578493|gb|ADL52505.1| DNA-directed DNA polymerase [Clostridium cellulovorans 743B]
Length = 353
Score = 154 bits (388), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 101/310 (32%), Positives = 166/310 (53%), Gaps = 19/310 (6%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++GV++AMP +IA+K CP IF+P + +Y S K+FC P S+DEAYL
Sbjct: 49 ARKYGVKSAMPVYIAKKKCPHGIFLPVRYWRYKEISKEIFKIFCSLTPYVEPLSIDEAYL 108
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D++ + + IE A+ ++ V +E GL S G++ N+ LAK+ SD NKPNG V+
Sbjct: 109 DLSYINED----PIECAKYIKQKVQKEIGLNLSIGISYNKFLAKLASDWNKPNGLKVITE 164
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHSTADFF 186
+ + + F L I ++ GIG + L D+ G+ E++ LL + + +
Sbjct: 165 EMIPELLF--PLEISRVYGIGNKSVKRLNDI-GVFNIEQLYNLPKELLRELMGKMGIEVY 221
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFS-----VTEDKALLYRKLAEIAEMLSADMQKEG 241
+ G + R RKSI E T + + E K L+Y E A+ +S ++ +
Sbjct: 222 ERIR-GYDNREVVVERERKSIGRETTLAKDVEQIEELKELIY----EFAKSISKTLKAKN 276
Query: 242 LRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHA-SVLLKAELPVSLRLIGLRVTQ 300
+ + +T+K+KTA F+ T++ TL YI EDI K A ++L ++ +RL+G+ ++
Sbjct: 277 ISAKNVTIKIKTADFKSHTKSKTLNHYIVGEEDIFKEAYNILENLDIKDKIRLVGVSMSS 336
Query: 301 FNEDKVRAPS 310
F EDK+ S
Sbjct: 337 FKEDKLEQIS 346
>gi|299771913|ref|YP_003733939.1| DNA polymerase IV [Acinetobacter oleivorans DR1]
gi|298702001|gb|ADI92566.1| DNA polymerase IV [Acinetobacter oleivorans DR1]
Length = 351
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 103/300 (34%), Positives = 161/300 (53%), Gaps = 11/300 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FG+R+AM ARKLCP+++ + +F KY S +F +Y SLDEAYL
Sbjct: 47 AREFGLRSAMSMSQARKLCPQVVIIEPNFEKYRTVSAQIHSIFQQYTLLIEPLSLDEAYL 106
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+TE ++ S E+A +R ++ GLT SAGVAPN+ LAK+ SD NKPNG V+
Sbjct: 107 DVTENLKQIA-SATEVAMHIREDIFRLTGLTASAGVAPNKFLAKIASDWNKPNGLCVIKP 165
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQK--GSLLCAVFSHSTADF 185
++A +FI LP++KI G+GKVT+ L+ + ++T + LQK ++L F
Sbjct: 166 SQVA--SFIQDLPLKKIPGVGKVTQEKLQQL-QLHTLGD-LQKIEEAILVHHFGKYGQQL 221
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
+L G+ R R+ IS E TF +AE + ++K+ L R
Sbjct: 222 YL-YAQGIDHRPVQAERARQQISKETTFDSDFTLVQCQPYWQGLAEKVWQSLEKKQLNAR 280
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELP--VSLRLIGLRVTQFN 302
+ +KLK +F+ + + ++ I S +D+++ +LL + ++P RLIG+ V Q
Sbjct: 281 GVNIKLKLKNFQTLQHSKSFKRPIQSLQDLIQVLFLLLNEMQIPEHFQFRLIGIGVYQLQ 340
>gi|50083505|ref|YP_045015.1| DNA polymerase IV [Acinetobacter sp. ADP1]
gi|81613392|sp|Q6FFG4.1|DPO4_ACIAD RecName: Full=DNA polymerase IV; Short=Pol IV
gi|49529481|emb|CAG67193.1| DNA polymerase IV, devoid of proofreading, damage-inducible protein
P [Acinetobacter sp. ADP1]
Length = 351
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 102/304 (33%), Positives = 166/304 (54%), Gaps = 19/304 (6%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR +G+R+AMP ARKLCP+LI + +F KY S ++F ++ SLDEAYL
Sbjct: 47 ARVYGLRSAMPMGQARKLCPDLIIIEPNFDKYRAVSHQIHQIFQQHTHIIEPLSLDEAYL 106
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+TE S ++A ++R ++E+ LT SAGVAPN+ LAK+ SD NKPNG V+
Sbjct: 107 DVTENLNNLP-SATDVAIQIRQQIWEQTSLTASAGVAPNKFLAKIASDWNKPNGLCVIKP 165
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHSTADFF 186
+ VM FI +LP++KI G+G+VT+ L+ + + T ++ + ++L F +
Sbjct: 166 HQ--VMQFIQNLPLKKIPGVGRVTQDKLQQL-KLETLGDLQHIEEAVLIQHFGKYGKQLY 222
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAE----IAEMLSADMQKEGL 242
L G+ + R R+ IS E TF D+ L + + +AE + +Q + L
Sbjct: 223 L-YAQGIDHRSVQAERVRQQISKETTF----DQDLYLHECSSYWLMLAEKVWQSLQNKNL 277
Query: 243 RGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSL----RLIGLRV 298
+ R + +KLK F+V + + ++ + S ++ K LL E+ ++L RLIG+ +
Sbjct: 278 QARGVNIKLKNKHFQVFQHSKSFKRALQSLDE-FKSVLALLLQEISLTLDDQYRLIGVGL 336
Query: 299 TQFN 302
Q +
Sbjct: 337 YQLS 340
>gi|421836285|ref|ZP_16270813.1| DNA polymerase IV, partial [Clostridium botulinum CFSAN001627]
gi|409741873|gb|EKN41498.1| DNA polymerase IV, partial [Clostridium botulinum CFSAN001627]
Length = 337
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 102/297 (34%), Positives = 158/297 (53%), Gaps = 11/297 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++GV +AMP FIA+K CP I+VP +Y S+ K+ K P S+DEAYL
Sbjct: 48 ARKYGVHSAMPVFIAKKRCPFGIYVPGRHERYKEVSNNIFKILYKVTPIIEPVSIDEAYL 107
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
DIT + E I++AE ++ V E GLT S G++ N+ LAK+ SD NKP+G ++
Sbjct: 108 DITNIKEE----PIKVAEHIKKRVKNEMGLTLSVGISYNKFLAKLASDWNKPDGIKIIRQ 163
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCA-VFSHSTADFF 186
D + + + LPI KI GIGK + L ++ GI T E+M + C F + +
Sbjct: 164 D--MIPSILMPLPINKIHGIGKKSVEKLNNI-GIYTVEDMHKLSRDFCIEYFGKFGVEIY 220
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
+ G+ +R RKSI E T +K + + L + + +S ++ K G+
Sbjct: 221 ERI-RGIDYREVKVSRERKSIGKEITLKKDITNKEEMKKYLLDFSNKVSTNLYKRNSGGK 279
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHA-SVLLKAELPVSLRLIGLRVTQF 301
T+T+K+KT++F+ TR+ T+ YI ++I A +L +RLIGL V+
Sbjct: 280 TVTVKIKTSNFQTHTRSKTVNDYIRDKDEIYNIACDILEHINFKEPIRLIGLTVSNL 336
>gi|345430002|ref|YP_004823122.1| DNA polymerase IV [Haemophilus parainfluenzae T3T1]
gi|301156065|emb|CBW15536.1| DNA polymerase IV [Haemophilus parainfluenzae T3T1]
Length = 377
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 114/303 (37%), Positives = 164/303 (54%), Gaps = 22/303 (7%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG+ +AMP A K CP LI VP + Y S ++F +Y SLDEAYL
Sbjct: 73 ARKFGLHSAMPTAQAIKKCPNLILVPVNMPLYKQVSAQIHQIFQRYTSIIEPLSLDEAYL 132
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-P 126
D+T+ C + S IA+E+R ++++E LT SAGVAP + LAK+ SD+NKPNGQFV+ P
Sbjct: 133 DVTD-CTQCSGSATWIAQEIRQAIFDELKLTASAGVAPLKFLAKIASDMNKPNGQFVIQP 191
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVT-EHILRDVFGINTCEEMLQK--GSLLCAVFSHSTA 183
++ V F+ +LP++KI G+GKVT E +L+ G+ TCE+ +QK S+L +F
Sbjct: 192 HE---VEQFVKTLPLKKIPGVGKVTSERLLK--MGLETCED-VQKLDQSILLNIFGKMGK 245
Query: 184 DFFLSVGLGLGSTNTPQARFRKSISSERTFS-----VTEDKALLYRKLAEIAEMLSADMQ 238
+ G+ R RKSI ERT S + + ALL AE+ +
Sbjct: 246 RIW-DFSHGIDEREIQAHRERKSIGVERTLSENIRHLEQGIALLDNLYAELIRRIERSAP 304
Query: 239 KEGLRG-RTLTLKLKTASFEVRTRAVT-LQKYISSSEDILKHASVLLKAELPVSLRLIGL 296
L R + +KLK F+V T T L I S + +L+ + + S+RL+GL
Sbjct: 305 NIPLTAFRKIGVKLKFEDFQVTTLEKTGLPLSIKSFQQLLEQ---IWQRSQGKSIRLVGL 361
Query: 297 RVT 299
VT
Sbjct: 362 HVT 364
>gi|148254691|ref|YP_001239276.1| DNA polymerase IV [Bradyrhizobium sp. BTAi1]
gi|146406864|gb|ABQ35370.1| DNA polymerase IV, devoid of proofreading, damage-inducible protein
P [Bradyrhizobium sp. BTAi1]
Length = 354
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 106/304 (34%), Positives = 166/304 (54%), Gaps = 19/304 (6%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR+AMP A++ CP+LIFV F Y S R +F ++ P SLDEAYL
Sbjct: 48 ARKFGVRSAMPSVTAKRQCPDLIFVKPRFEVYKAISLQVRAIFAEHTPLIEPLSLDEAYL 107
Query: 68 DITEVCRERGISGI----EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF 123
D+TE + GI +IA +R ++ E GL SAG++ N+ LAK+ SD KPNGQ+
Sbjct: 108 DVTE-----NLQGIPLARDIALRIRETIKTETGLNASAGISYNKFLAKLASDHRKPNGQY 162
Query: 124 VLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHST 182
V+ + F+ +LP+ K GIG T L GI T ++ ++ + L F S
Sbjct: 163 VISPEMGP--AFVETLPVGKFHGIGPATAAKL-TALGIRTGLDIRRQSLAFLQQHFGKSG 219
Query: 183 ADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKE 240
A ++ + G+ R RKS+ +E TF VT+ L + +L + + + +
Sbjct: 220 A-YYYWISRGIDERPVRADRIRKSVGAETTF-VTDLTELEPMTAELRPLIDKVWRHCEST 277
Query: 241 GLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRV 298
G GRT+TLK+K + FE+ TR+ +L ++ D+ + A LL+AE+P+ +RL+G+ +
Sbjct: 278 GKSGRTVTLKVKFSDFEIITRSRSLLSPVTGRTDLERLAVGLLQAEMPLPKPVRLLGVAL 337
Query: 299 TQFN 302
+
Sbjct: 338 SSLQ 341
>gi|424033801|ref|ZP_17773212.1| DNA polymerase IV [Vibrio cholerae HENC-01]
gi|408873914|gb|EKM13097.1| DNA polymerase IV [Vibrio cholerae HENC-01]
Length = 342
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 117/315 (37%), Positives = 161/315 (51%), Gaps = 32/315 (10%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR+AMP A +LCP L+ VP Y S R +F +Y P SLDEAYL
Sbjct: 40 ARKFGVRSAMPTARALQLCPHLLVVPGRMHVYKQVSQQIRTIFERYTPLIEPLSLDEAYL 99
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T+ RG S IAE +R ++ E GLT SAG+AP + LAKV SD+NKPNGQFV+P
Sbjct: 100 DVTDSTACRG-SATLIAESIRNDIWNELGLTASAGIAPIKFLAKVASDMNKPNGQFVIPP 158
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFF 186
++ V + LP+ KI G+GKV+ L G CE++ L F A +
Sbjct: 159 EK--VQEVVDKLPLEKIPGVGKVSLEKLHQA-GFYLCEDIKNSDYRELLRQFGRQGASLW 215
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFS-----------VTEDKALLYRKLAEIAEMLSA 235
G+ R RKS+ ERTFS V EDK LY +L + E S
Sbjct: 216 -KRSHGIDDREVVVERERKSVGVERTFSENIVTYDECWQVIEDK--LYPELEKRLEKASP 272
Query: 236 D--MQKEGLRGRTLTLKLKTASFEVRT-RAVTLQKYISSSEDILKHASVLLKAELPVSLR 292
D + K+G +KLK A F++ T + Q + +++L+ +LK + +R
Sbjct: 273 DKSIIKQG-------IKLKFADFQLTTIEHIHPQLELDDFKELLRD---ILKRQNGREIR 322
Query: 293 LIGLRVTQFNEDKVR 307
L+GL V E + R
Sbjct: 323 LLGLSVMLKPEQQAR 337
>gi|342904369|ref|ZP_08726170.1| DNA polymerase IV [Haemophilus haemolyticus M21621]
gi|341953609|gb|EGT80113.1| DNA polymerase IV [Haemophilus haemolyticus M21621]
Length = 355
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 110/308 (35%), Positives = 160/308 (51%), Gaps = 20/308 (6%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG+ +AMP A K CP LI VP + Y S ++F +Y SLDEAYL
Sbjct: 51 ARKFGLHSAMPTAQAIKKCPNLILVPVNMALYKQVSVQIHQIFQRYTDIIEPLSLDEAYL 110
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-P 126
D+T C++ S IA+E+R ++++E LT SAGVAP + LAK+ SD+NKPNGQFV+ P
Sbjct: 111 DVTH-CQKCSGSATWIAQEIRQAIFDELNLTASAGVAPLKFLAKIASDMNKPNGQFVIKP 169
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFF 186
N+ V FI +LP+ KI G+GKVT L D+ G+ TC ++ ++
Sbjct: 170 NE---VSEFIKTLPLNKIPGVGKVTSQRLLDM-GLETCADIQNFDQIVLLNQFGKAGKRI 225
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTF-----SVTEDKAL---LYRKLAEIAEMLSADMQ 238
G+ R RKS+ E+T ++ + AL LY++L E +S ++
Sbjct: 226 WDFSHGIDDREVQAHRERKSVGVEQTLIENIHTIEQASALLNNLYQELIRRLERVSCNIP 285
Query: 239 KEGLRGRTLTLKLKTASFEVRTRAVT-LQKYISSSEDILKHASVLLKAELPVSLRLIGLR 297
R + +KLK F+V T T L + S + +L + K S+RLIGL
Sbjct: 286 LSAF--RKIGIKLKFEDFQVTTLEKTGLSLSLESFQQLLPQIFMRSKGR---SIRLIGLH 340
Query: 298 VTQFNEDK 305
V E+K
Sbjct: 341 VNLPEENK 348
>gi|189044612|sp|Q1JF59.1|DPO4_STRPD RecName: Full=DNA polymerase IV; Short=Pol IV
gi|94544652|gb|ABF34700.1| DNA polymerase IV [Streptococcus pyogenes MGAS10270]
Length = 364
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 113/316 (35%), Positives = 176/316 (55%), Gaps = 36/316 (11%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++G+ +AM A + CP+ IF+ ++ KY D R++F +Y S+DEAYL
Sbjct: 61 ARKYGIHSAMSSKEAYERCPKAIFISGNYEKYRTVGDQIRRIFKRYTDVVEPMSIDEAYL 120
Query: 68 DITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVL 125
D+T+ + GI S ++IA+ ++ +++E GLTCSAGV+ N+ LAK+ SD KP+G VL
Sbjct: 121 DVTD--NKLGIKSAVKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKPHGLTLVL 178
Query: 126 PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADF 185
D + F++ LPI K G+GK + L D+ GI T +++L AV + D
Sbjct: 179 KED---ALCFLAKLPIEKFHGVGKKSVEKLHDM-GIYTGQDLL-------AVPEMTLIDH 227
Query: 186 FLSVGLGL-----GSTNTP--QARFRKSISSERTFSVTEDKALLYRKL---AEI---AEM 232
F G L G +N+P R RKSI SERT++ LLY++ AEI A+
Sbjct: 228 FGRFGFDLYRKARGISNSPVKSDRIRKSIGSERTYA-----KLLYQETDIKAEISKNAKR 282
Query: 233 LSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVS 290
++A +Q G+T+ LK++ A F T+ VTL + ++ I + A + +E P
Sbjct: 283 VAALLQDHKKLGKTIVLKVRYADFTTLTKRVTLPELTRNAAQIEQVAGDIFDSLSENPAG 342
Query: 291 LRLIGLRVTQFNEDKV 306
+RL+G+ +T EDKV
Sbjct: 343 IRLLGVTMTNL-EDKV 357
>gi|238021390|ref|ZP_04601816.1| hypothetical protein GCWU000324_01289 [Kingella oralis ATCC 51147]
gi|237868370|gb|EEP69376.1| hypothetical protein GCWU000324_01289 [Kingella oralis ATCC 51147]
Length = 360
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 109/311 (35%), Positives = 166/311 (53%), Gaps = 16/311 (5%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++G+R+AM A++LCP +F+P F Y S ++F + +LDEAYL
Sbjct: 50 ARKYGLRSAMAVATAKRLCPHAVFIPPQFALYRQVSRQIHQIFRLHTDLIEPLALDEAYL 109
Query: 68 DITEVCRERGIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL- 125
D+T C ++ I+ +IA +R ++ + GLT SAG+APN+ LAK+ SD KPNGQFV+
Sbjct: 110 DVT--CNKQNIAYARDIALAIRAEIHRQTGLTASAGIAPNKFLAKIASDWRKPNGQFVIA 167
Query: 126 PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADF 185
P + V F+ +LP+ KI G+GK T L + G T + LQ+ L + +
Sbjct: 168 PQN---VNAFLHTLPLGKISGVGKKTLAKL-NAQGWRTVGD-LQRVPLGMLINLFGRWGY 222
Query: 186 FLSVGLGLGSTNTP--QARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLR 243
L L G N P R R IS+E T + R + ++A L+ MQ+
Sbjct: 223 RLH-DLAHGVDNRPVEPERERVQISTEITLPDDLPLGQIVRHIPDLARDLAQQMQRRHTI 281
Query: 244 GRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQF 301
G+TLTLKLKT+ F TR+ T + S++ +++ A L K +P RLIG+ ++
Sbjct: 282 GQTLTLKLKTSDFRTLTRSQTYSSALPSAQTLIQAAQQLAK-RMPSEHEYRLIGIGISHL 340
Query: 302 NEDKVRAPSDP 312
+D+ R P P
Sbjct: 341 -QDENRQPELP 350
>gi|85859606|ref|YP_461807.1| DNA polymerase IV [Syntrophus aciditrophicus SB]
gi|85722697|gb|ABC77640.1| DNA polymerase IV [Syntrophus aciditrophicus SB]
Length = 362
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 102/302 (33%), Positives = 164/302 (54%), Gaps = 11/302 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++G+ +AMP A KLCP IF+P D+ Y S + V +DEAYL
Sbjct: 62 ARKYGISSAMPLRTAYKLCPRAIFLPVDYKAYLAVSRYFKAVLLNITTIMEDVGIDEAYL 121
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
DI+E R+ + +I+E+++T +YE+ GLTCS G+APN+LLAK+ SD+NKP+G +
Sbjct: 122 DISE-NRD---TDEKISEKIKTGIYEKTGLTCSIGIAPNKLLAKIASDMNKPDGLTIFSG 177
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHSTADFF 186
+ + + LPIRK+ GIG TE L+ I T ++ +L A F S +
Sbjct: 178 ED--IENRLWPLPIRKLYGIGPKTEEHLK-ALNIATIGQLAALPPEVLVARFGPSYGHYL 234
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFSVTE-DKALLYRKLAEIAEMLSADMQKEGLRGR 245
G+ + + KS S E TF V E + + R LAE+ + + +D+ ++G R
Sbjct: 235 HEASRGIDESPIITSWEPKSFSREITFQVDEKNWQAIARTLAELTKEVVSDLAEKGYAAR 294
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHA-SVLLKAELP-VSLRLIGLRVTQFNE 303
+ LK++ + F TRA ++ + + E+I + A S L + +L +RL+G+RV + +
Sbjct: 295 NVILKIRYSDFRTVTRACSIDQAVGKEEEIRRMAFSCLKRVDLSGKKIRLVGVRVGRLEK 354
Query: 304 DK 305
K
Sbjct: 355 IK 356
>gi|88705924|ref|ZP_01103633.1| DNA polymerase IV [Congregibacter litoralis KT71]
gi|88699995|gb|EAQ97105.1| DNA polymerase IV [Congregibacter litoralis KT71]
Length = 410
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 116/325 (35%), Positives = 169/325 (52%), Gaps = 21/325 (6%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGV++AMPG AR+ CP+L+FV F Y S +F +Y SLDEAYL
Sbjct: 92 ARKFGVKSAMPGVTARRRCPQLLFVKPRFEVYRAVSQQLHGIFARYTHIIEPLSLDEAYL 151
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T G S IAE +R + E LT SAGV+ N+ +AKV SD NKP+G FV+
Sbjct: 152 DVTADLAGLG-SATAIAEAIRGDIRRELRLTASAGVSYNKFIAKVASDQNKPDGVFVVRP 210
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM-LQKGSLLCAVFSHSTADFF 186
+ A F+++LP R+ G+G T + + GI T ++ Q L F S A +
Sbjct: 211 EEGA--AFVATLPARRFFGVGPKTAERMSSL-GIQTGADIRAQTLGFLEQHFGKS-AHYL 266
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRG 244
G R RKSI ERT+S ++ D+A L L I +++ + + RG
Sbjct: 267 YRASRGEDYRAVKADRERKSIGGERTYSDDLSTDEA-LRDALEHIIDIVWERIHRNNARG 325
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQF- 301
RT+T+K+K A F+ TRA ++ + + E + + LL+A LPV +RL+GL ++
Sbjct: 326 RTVTIKVKYADFQQITRARSVSPPVDTREAFERLSRGLLEALLPVPKGVRLLGLTLSSLE 385
Query: 302 --------NEDKVRAPSDPTQKTLT 318
E V A S P Q++L
Sbjct: 386 SSQEPAHTGESGV-AESGPVQESLA 409
>gi|390990143|ref|ZP_10260433.1| ImpB/MucB/SamB family protein [Xanthomonas axonopodis pv. punicae
str. LMG 859]
gi|372555108|emb|CCF67408.1| ImpB/MucB/SamB family protein [Xanthomonas axonopodis pv. punicae
str. LMG 859]
Length = 359
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 109/302 (36%), Positives = 162/302 (53%), Gaps = 13/302 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FG+R+AMP A +LCP+ IFVP DF +Y S R++F ++ SLDEAYL
Sbjct: 47 ARIFGIRSAMPAVRAERLCPDAIFVPPDFARYKAVSRQVREIFHRHTDLVEPLSLDEAYL 106
Query: 68 DITEVCRERGIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP 126
D+T + G+ E+A+ +RT + EE LT SAG+A N+ LAK+ SD KP+GQFV+
Sbjct: 107 DVTHA--KTGMQLATEVAQLIRTQIREETQLTASAGIASNKFLAKIASDWRKPDGQFVIA 164
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFF 186
R V F+ L + +I G+GKV + L GI T ++ Q+ S
Sbjct: 165 PSR--VDAFLLPLKVNRIPGVGKVMDGKL-AALGIVTVADLRQRPLEELQAHFGSFGQSL 221
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRG 244
G+ + +S+SSE TFS ED AL L + +AE ++ G
Sbjct: 222 YRRARGIDERPVEPDQEVQSVSSEDTFS--EDLALDALAPHILRLAEKTWLATRRTERIG 279
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELPVS--LRLIGLRVTQF 301
RT+ LKLKT++F + TR+ T ++ +S E + + A L + ELP RL+G+ + F
Sbjct: 280 RTVVLKLKTSNFRILTRSYTPEQPPTSQEALAQIALALTRRVELPAQTRYRLVGVGLGGF 339
Query: 302 NE 303
++
Sbjct: 340 SD 341
>gi|294055037|ref|YP_003548695.1| DNA-directed DNA polymerase [Coraliomargarita akajimensis DSM
45221]
gi|293614370|gb|ADE54525.1| DNA-directed DNA polymerase [Coraliomargarita akajimensis DSM
45221]
Length = 350
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 114/315 (36%), Positives = 167/315 (53%), Gaps = 33/315 (10%)
Query: 7 SARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAY 66
SAR +GVR+AMP F AR+LCP+LI +P F Y S R +F +Y SLDEAY
Sbjct: 49 SARSYGVRSAMPVFQARQLCPQLIILPVRFELYRTISKQVRAIFHRYTDLVEPLSLDEAY 108
Query: 67 LDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP 126
LD++++ ++R G EIA E+R+++ E GLT SAG+APN+L+AK+ SD NKPNGQ ++
Sbjct: 109 LDVSQL-KQR---GAEIATEIRSTIERETGLTASAGIAPNKLIAKIASDWNKPNGQCIVG 164
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADF- 185
+ V F+ LPIRKI GIG + ++ GI TC ++ + L +H F
Sbjct: 165 PSK--VEAFMRPLPIRKIWGIGPKSAQRFAEL-GIETCGQLQE---LDQTQLTHRFGSFG 218
Query: 186 --FLSVGLGLGSTNTPQARFRKSISSERTF-----SVTEDKALLYRKLAEIAEMLSADMQ 238
+ G+ R RKS+S E TF ++ ++ L R+ E+ + L A
Sbjct: 219 FELYKLCRGIDERPVEPNRIRKSLSCEHTFQQNLETLRACESQLERQFDELLQDLRASAP 278
Query: 239 KEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAE----LPVSLRLI 294
+ L +KLK A F R T +K +S D+ ++ ++L +A PV L I
Sbjct: 279 DRQI--TKLVIKLKFADF----RQTTAEK-PASQPDLQQYTALLHEAWGRSGQPVRLLGI 331
Query: 295 GLRVTQFNEDKVRAP 309
G+R D R P
Sbjct: 332 GVRFA----DAHRGP 342
>gi|433608670|ref|YP_007041039.1| DNA polymerase IV [Saccharothrix espanaensis DSM 44229]
gi|407886523|emb|CCH34166.1| DNA polymerase IV [Saccharothrix espanaensis DSM 44229]
Length = 427
Score = 153 bits (386), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 104/299 (34%), Positives = 164/299 (54%), Gaps = 6/299 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR +GVR+AMP AR+L P +FV ++ +Y S +F P SLDEA+L
Sbjct: 75 AREYGVRSAMPTAHARRLAPHAVFVTPNYARYQEVSRGVMAIFRDITPLVEPLSLDEAFL 134
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D++ R + IAE +R V G+TCS GVAP + LAK+ S + KP+G V+P
Sbjct: 135 DVSGALRRLRATPGAIAETIRDQVERAEGVTCSVGVAPTKFLAKLASGMCKPDGMMVVP- 193
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFF 186
+ AV+ F+ LP+ + G+GK T L D G+ T ++ L V + A+
Sbjct: 194 -KAAVLEFLHPLPVSALWGVGKRTAEQL-DRVGLETVADVAATPLPRLRRVLGVALAEHL 251
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFSVTE-DKALLYRKLAEIAEMLSADMQKEGLRGR 245
++ GL + KSI +E TF V D+ LL R+L ++E + +++ GLRGR
Sbjct: 252 HALAQGLDDRPVVPSSREKSIGAEETFEVDHFDRELLRRELLRLSERSAGTLRERGLRGR 311
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV-SLRLIGLRVTQFNE 303
T+++K++ A F TR+ TL+ ++++ K A+ LL ++P ++RLIG+R+ Q E
Sbjct: 312 TVSIKVRFADFTTITRSKTLRVATDVTQEVYKTAATLLDEQVPPGAVRLIGVRIEQLVE 370
>gi|373467387|ref|ZP_09558686.1| DNA polymerase IV [Haemophilus sp. oral taxon 851 str. F0397]
gi|371758922|gb|EHO47678.1| DNA polymerase IV [Haemophilus sp. oral taxon 851 str. F0397]
Length = 355
Score = 153 bits (386), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 109/308 (35%), Positives = 161/308 (52%), Gaps = 20/308 (6%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG+ +AMP A K CP LI VP + T Y S ++F +Y SLDEAYL
Sbjct: 51 ARKFGLHSAMPTAQAIKKCPNLILVPVNMTLYKQVSAQIHQIFQRYTDIIEPLSLDEAYL 110
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-P 126
D+T C++ S IA+E+R ++++E LT SAG+AP + LAK+ SD+NKPNGQFV+ P
Sbjct: 111 DVTH-CQKCSGSATWIAQEIRQAIFDELKLTASAGIAPLKFLAKIASDMNKPNGQFVIKP 169
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFF 186
N+ V FI +LP+ KI G+GKVT L D+ G+ TC ++ ++
Sbjct: 170 NE---VSEFIKTLPLNKIPGVGKVTSQRLLDM-GLETCADIQNFDQIVLLNQFGKAGKRI 225
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTF-----SVTEDKAL---LYRKLAEIAEMLSADMQ 238
G+ R RKS+ E+T ++ + AL LY +L E +++++
Sbjct: 226 WDFSHGIDDREVQAHRERKSVGVEQTLIENIHTIEQASALLNNLYDELIRRLERINSNIP 285
Query: 239 KEGLRGRTLTLKLKTASFEVRTRAVT-LQKYISSSEDILKHASVLLKAELPVSLRLIGLR 297
R + +KLK F+V T T L + S + +L + K S+RLIGL
Sbjct: 286 LSAF--RKIGVKLKFEDFQVTTLEKTGLPLSLESFQQLLPQIFMRAKGR---SIRLIGLH 340
Query: 298 VTQFNEDK 305
V E+K
Sbjct: 341 VNLPEENK 348
>gi|327312331|ref|YP_004327768.1| DNA polymerase IV [Prevotella denticola F0289]
gi|326945721|gb|AEA21606.1| DNA polymerase IV [Prevotella denticola F0289]
Length = 359
Score = 153 bits (386), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 113/323 (34%), Positives = 169/323 (52%), Gaps = 27/323 (8%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FGV +AMP AR+ CP L+ VP F +Y S VF +Y SLDEA+L
Sbjct: 47 ARPFGVHSAMPMAQARRRCPHLVVVPCHFDRYKAVSRQIHAVFHEYTDLVEPISLDEAFL 106
Query: 68 DITEVCRERGIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP 126
D+TE ++G+ ++IA E++ + + LT SAG++ N+LLAK+ SD+ KP+G F +
Sbjct: 107 DVTE--NKKGMDLAVDIAREIKQKILDRTSLTASAGISYNKLLAKISSDMRKPDGLFTVH 164
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADF 185
DR + F+ SLP+ K+ G+G T + D+ G+ T ++ Q L VF +
Sbjct: 165 PDR--ALGFVGSLPVEKLWGVGPKTAKRMHDM-GVFTGGQLRQVSRRHLVQVFG-KMGNI 220
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL-------LYRKLAEIAEMLSADMQ 238
+ G+ + RKS+ ERTF ED + LY + E+ E L+
Sbjct: 221 YYDFSRGIDNRPVVAVHERKSVGCERTF--LEDLHVGSKIIIELYHIVLELVERLA---- 274
Query: 239 KEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK----AELPVSLRLI 294
+ G GRTLTLKLK + TR++T Q+ + + +DIL A LLK + PV RL+
Sbjct: 275 RSGFEGRTLTLKLKWDATTQITRSLTQQRVLRTKDDILPLAKQLLKETSCHDRPV--RLM 332
Query: 295 GLRVTQFNEDKVRAPSDPTQKTL 317
GL V+ +K + P + L
Sbjct: 333 GLSVSSPLPEKEESSHVPVEGLL 355
>gi|19746777|ref|NP_607913.1| DNA polymerase IV [Streptococcus pyogenes MGAS8232]
gi|24211640|sp|Q8NZI1.1|DPO4_STRP8 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|19749010|gb|AAL98412.1| putative DNA-damage-inducible protein P [Streptococcus pyogenes
MGAS8232]
Length = 364
Score = 153 bits (386), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 113/316 (35%), Positives = 176/316 (55%), Gaps = 36/316 (11%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++G+ +AM A + CP+ IF+ ++ KY D R++F +Y S+DEAYL
Sbjct: 61 ARKYGIHSAMSSKEAYERCPKAIFISGNYEKYRTVGDQIRRIFKRYTDLVEPMSIDEAYL 120
Query: 68 DITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVL 125
D+T+ + GI S ++IA+ ++ +++E GLTCSAGV+ N+ LAK+ SD KP+G VL
Sbjct: 121 DVTD--NKLGIKSAVKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKPHGLTLVL 178
Query: 126 PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADF 185
D + F++ LPI K G+GK + L D+ GI T +++L AV + D
Sbjct: 179 KED---ALCFLAKLPIEKFHGVGKKSVEKLHDM-GIYTGQDLL-------AVPEMTLIDH 227
Query: 186 FLSVGLGL-----GSTNTP--QARFRKSISSERTFSVTEDKALLYRKL---AEI---AEM 232
F G L G +N+P R RKSI SERT++ LLY++ AEI A+
Sbjct: 228 FGRFGFDLYRKARGISNSPVKSDRIRKSIGSERTYA-----KLLYQETDIKAEISKNAKR 282
Query: 233 LSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVS 290
++A +Q G+T+ LK++ A F T+ VTL + ++ I + A + +E P
Sbjct: 283 VAALLQDHKKLGKTIVLKVRYADFTTLTKRVTLPELTRNAAQIEQVAGDIFDSLSENPAG 342
Query: 291 LRLIGLRVTQFNEDKV 306
+RL+G+ +T EDKV
Sbjct: 343 IRLLGVTMTNL-EDKV 357
>gi|398353762|ref|YP_006399226.1| DNA polymerase IV [Sinorhizobium fredii USDA 257]
gi|390129088|gb|AFL52469.1| DNA polymerase IV [Sinorhizobium fredii USDA 257]
Length = 374
Score = 153 bits (386), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 102/303 (33%), Positives = 163/303 (53%), Gaps = 17/303 (5%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGV +AMP A++ CP+LIFV F Y S+ R++F +Y P SLDEAYL
Sbjct: 67 ARKFGVHSAMPSVTAKRKCPDLIFVIPRFDVYRAVSEQIRQIFAEYTPLIEPLSLDEAYL 126
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-P 126
D+TE + I+ +IAEE+R + GLT SAGV+ N+ LAK+ SD KP+G FV+ P
Sbjct: 127 DVTENLKGMEIA-TDIAEEIRAKIKATTGLTASAGVSYNKFLAKMASDQRKPDGLFVITP 185
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFF 186
+ A F+ +LP++K G+G T ++ + GI T ++ + + + +F
Sbjct: 186 RNGPA---FVEALPVKKFHGVGPATAERMKRL-GIETGLDLKTRSLVFLQEHFGKSGAYF 241
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALL-----YRKLAEIAEMLSADMQKEG 241
+ G+ R RKS+ +E TF+ ED LL ++L + E + +
Sbjct: 242 YGIARGIDQREVKPDRVRKSVGAEDTFA--ED--LLEFEPASKELVPLVEKVWRYCEANA 297
Query: 242 LRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVT 299
+ RT+T+K+K + F TR+ TL ++ +I + A LL P S+RL+G+ ++
Sbjct: 298 ISARTVTVKIKYSDFTQATRSRTLPVPVTGPAEIAEIARALLSMVYPFRRSIRLLGVTLS 357
Query: 300 QFN 302
+
Sbjct: 358 SLD 360
>gi|139473158|ref|YP_001127873.1| DNA polymerase IV [Streptococcus pyogenes str. Manfredo]
gi|189044614|sp|A2RCQ1.1|DPO4_STRPG RecName: Full=DNA polymerase IV; Short=Pol IV
gi|134271404|emb|CAM29624.1| DNA polymerase IV [Streptococcus pyogenes str. Manfredo]
Length = 364
Score = 153 bits (386), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 113/316 (35%), Positives = 176/316 (55%), Gaps = 36/316 (11%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++G+ +AM A + CP+ IF+ ++ KY D R++F +Y S+DEAYL
Sbjct: 61 ARKYGIHSAMSSKEAYERCPKAIFISGNYEKYRTVGDQIRRIFKRYTDLVEPMSIDEAYL 120
Query: 68 DITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVL 125
D+T+ + GI S ++IA+ ++ +++E GLTCSAGV+ N+ LAK+ SD KP+G VL
Sbjct: 121 DVTD--NKLGIKSAVKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKPHGLTLVL 178
Query: 126 PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADF 185
D + F++ LPI K G+GK + L D+ GI T +++L AV + D
Sbjct: 179 KED---ALCFLAKLPIEKFHGVGKKSVEKLHDM-GIYTGQDLL-------AVPEMTLIDH 227
Query: 186 FLSVGLGL-----GSTNTP--QARFRKSISSERTFSVTEDKALLYRKL---AEI---AEM 232
F G L G +N+P R RKSI SERT++ LLY++ AEI A+
Sbjct: 228 FGRFGFDLYRKARGISNSPVKSDRIRKSIGSERTYA-----KLLYQETDIKAEISKNAKR 282
Query: 233 LSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVS 290
++A +Q G+T+ LK++ A F T+ VTL + ++ I + A + +E P
Sbjct: 283 VAALLQDHKKLGKTIVLKVRYADFTTLTKRVTLPELTRNAAQIEQVAGDIFDSLSENPAG 342
Query: 291 LRLIGLRVTQFNEDKV 306
+RL+G+ +T EDKV
Sbjct: 343 IRLLGVTMTNL-EDKV 357
>gi|260593234|ref|ZP_05858692.1| DNA-directed DNA polymerase [Prevotella veroralis F0319]
gi|260534791|gb|EEX17408.1| DNA-directed DNA polymerase [Prevotella veroralis F0319]
Length = 362
Score = 153 bits (386), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 114/307 (37%), Positives = 171/307 (55%), Gaps = 17/307 (5%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR +GV +AM A++ CP+LI VP F +Y S +VF +Y SLDEA+L
Sbjct: 47 ARPYGVHSAMSIAQAKRRCPDLIIVPCHFERYKEVSGQIHEVFHEYTDLVEPISLDEAFL 106
Query: 68 DITEVCRERGIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP 126
D+TE ++GI+ ++IA++++ ++E LT SAGV+ N+LLAK+ SDI KPNG +++
Sbjct: 107 DVTE--NKKGIALAVDIAKDIKQKIFERTSLTASAGVSYNKLLAKIASDIRKPNGIYIVH 164
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL--LCAVFSHSTAD 184
+R M FI+ LPI K+ GIG T + ++ G+ T E+ L+K S L VF
Sbjct: 165 PER--AMNFIARLPIEKLWGIGPKTAIKMHEM-GVFTGEQ-LRKISYNHLVQVFG-KMGK 219
Query: 185 FFLSVGLGLGSTNTPQARFRKSISSERTFSVTED---KALLYRKLAEIAEMLSADMQKEG 241
+ G+ +R RKS+ ERTF ED K+ + +L I L + +
Sbjct: 220 VYYDFSRGIDERPVVISRERKSVGCERTF--LEDLHVKSKIVIELYHITLELVERLSRSK 277
Query: 242 LRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK-AELPV-SLRLIGLRVT 299
GRTLTLKLK + TR++T +K + + EDIL A LL+ E +RL+GL V+
Sbjct: 278 FEGRTLTLKLKWDATTQITRSLTQEKILRTKEDILPLAKQLLRETEYETRPIRLMGLSVS 337
Query: 300 QFNEDKV 306
D++
Sbjct: 338 FPTNDEI 344
>gi|71904218|ref|YP_281021.1| DNA polymerase IV [Streptococcus pyogenes MGAS6180]
gi|123639299|sp|Q48RJ4.1|DPO4_STRPM RecName: Full=DNA polymerase IV; Short=Pol IV
gi|71803313|gb|AAX72666.1| DNA polymerase IV [Streptococcus pyogenes MGAS6180]
Length = 364
Score = 153 bits (386), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 113/316 (35%), Positives = 175/316 (55%), Gaps = 36/316 (11%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++G+ +AM A + CP+ IF+ ++ KY D R++F +Y S+DEAYL
Sbjct: 61 ARKYGIHSAMSSKEAYERCPKAIFISGNYEKYRTVGDQIRRIFKRYTDVVEPMSIDEAYL 120
Query: 68 DITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVL 125
D+T + GI S ++IA+ ++ +++E GLTCSAGV+ N+ LAK+ SD KP+G VL
Sbjct: 121 DVTN--NKLGIKSAVKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKPHGLTLVL 178
Query: 126 PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADF 185
D + F++ LPI K G+GK + L D+ GI T +++L AV + D
Sbjct: 179 KED---ALCFLAKLPIEKFHGVGKKSVEKLHDM-GIYTGQDLL-------AVPEMTLIDH 227
Query: 186 FLSVGLGL-----GSTNTP--QARFRKSISSERTFSVTEDKALLYRKL---AEI---AEM 232
F G L G +N+P R RKSI SERT++ LLY++ AEI A+
Sbjct: 228 FGRFGFDLYRKARGISNSPVKSDRIRKSIGSERTYA-----KLLYQETDIKAEISKNAKR 282
Query: 233 LSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVS 290
++A +Q G+T+ LK++ A F T+ VTL + ++ I + A + +E P
Sbjct: 283 VAALLQDHKKLGKTIVLKVRYADFTTLTKRVTLPELTRNAAQIEQVAGDIFDSLSENPAG 342
Query: 291 LRLIGLRVTQFNEDKV 306
+RL+G+ +T EDKV
Sbjct: 343 IRLLGITMTNL-EDKV 357
>gi|56160414|gb|AAV80821.1| polymerase kappa isoform 5 [Mus musculus]
Length = 275
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 74/136 (54%), Positives = 93/136 (68%), Gaps = 5/136 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFGVRAAMPGFIA++LCP+LI VP +F KY S +++ +YDPNFMA SLDEAYL
Sbjct: 142 ARRFGVRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILAEYDPNFMAMSLDEAYL 201
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
+IT+ +ER + E + + + G G+APN +LAKVCSD NKPNGQ+ +
Sbjct: 202 NITQHLQER-----QDWPEDKRRYFIKMGNYLKIGIAPNTMLAKVCSDKNKPNGQYQILP 256
Query: 128 DRMAVMTFISSLPIRK 143
R AVM FI LPIRK
Sbjct: 257 SRSAVMDFIKDLPIRK 272
>gi|350566930|ref|ZP_08935549.1| DNA-directed DNA polymerase IV [Peptoniphilus indolicus ATCC 29427]
gi|348660650|gb|EGY77359.1| DNA-directed DNA polymerase IV [Peptoniphilus indolicus ATCC 29427]
Length = 349
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 99/297 (33%), Positives = 158/297 (53%), Gaps = 13/297 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++G+ +AMP FIA+ CP LI VP +Y S + Y S+DEAYL
Sbjct: 49 ARKYGLHSAMPLFIAKNSCPNLIIVPGRMQRYLEKSKEVFDILHSYTEILEKVSIDEAYL 108
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP- 126
D++ ++ +++A++++ V + GLT S G++ N+ LAK+ SD NKP+G V+
Sbjct: 109 DLSN-----SLNSVDVAKQIKNEVKDRTGLTVSCGISYNKFLAKLASDWNKPDGLKVISK 163
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADF 185
ND V + L I+K+ G+G+ ++ LR++ GINT E+M Q L +F +
Sbjct: 164 ND---VPDILLPLDIKKVHGLGRKSQEKLRNI-GINTVEDMFQLDLEFLEKIFGKMGYEI 219
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
+ + G+ + R RKS+ ERTF T DK +L +L + + LS D+ + L +
Sbjct: 220 YQRIR-GIDNRAVNSQRSRKSLGVERTFPDTRDKYILLNRLIQYSVELSKDLSSKNLGFK 278
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELP-VSLRLIGLRVTQF 301
TLTLKLKT F++ T + T I+ ++I A L LRL+G+ +
Sbjct: 279 TLTLKLKTFDFKINTHSKTYSHVINDKQEIENLALELFNTHYKGEKLRLMGISASNL 335
>gi|225871905|ref|YP_002753359.1| DNA polymerase IV [Acidobacterium capsulatum ATCC 51196]
gi|225791585|gb|ACO31675.1| putative DNA polymerase IV [Acidobacterium capsulatum ATCC 51196]
Length = 374
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 111/311 (35%), Positives = 169/311 (54%), Gaps = 15/311 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR+AMP A +LCP+ IFVP DFT+Y S R++F ++ SLDEAYL
Sbjct: 59 ARQFGVRSAMPAVTAERLCPQAIFVPPDFTRYKAVSRAVREIFERHTDLIEPLSLDEAYL 118
Query: 68 DITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL- 125
D+T + G+ + ++A +R + EE LT SAGVAPN+ LAK+ SD KP+G FV+
Sbjct: 119 DVTH--NKTGLPTATKVAITIRRQIREELSLTASAGVAPNKFLAKIASDWRKPDGLFVIQ 176
Query: 126 PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQK--GSLLCAVFSHSTA 183
P D + TF+ L + +I G+GKVTE L GI T ++ +L +
Sbjct: 177 PQD---LATFLPPLAVGRIPGVGKVTEERLAR-LGIRTAGDLQHYDLATLESNFGRYGLR 232
Query: 184 DFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLR 243
+ L+ G+ S TP R KS+S+E TF + + ++E + ++E
Sbjct: 233 LYHLARGVD-HSPVTPN-RPTKSVSAEDTFEADIPLSATEPVIRRLSEKVWNASRREARI 290
Query: 244 GRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHA-SVLLKAELPVS--LRLIGLRVTQ 300
RT+ LKLKT F + TR++T + +S E++ A S+ + +L RLIG+ ++
Sbjct: 291 ARTVVLKLKTGDFHIHTRSLTPETPPASCEELTAIALSLRERVDLGADRLYRLIGVGLSN 350
Query: 301 FNEDKVRAPSD 311
F + + A D
Sbjct: 351 FRDPEPDAAED 361
>gi|424892013|ref|ZP_18315593.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Rhizobium leguminosarum bv. trifolii WSM2297]
gi|424893756|ref|ZP_18317336.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Rhizobium leguminosarum bv. trifolii WSM2297]
gi|393183294|gb|EJC83331.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Rhizobium leguminosarum bv. trifolii WSM2297]
gi|393185037|gb|EJC85074.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Rhizobium leguminosarum bv. trifolii WSM2297]
Length = 362
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 100/298 (33%), Positives = 156/298 (52%), Gaps = 9/298 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FGV +AMP A++ C +LIFVP F Y S R++F +Y P SLDEAYL
Sbjct: 55 ARAFGVHSAMPSVTAKRKCLDLIFVPPRFDVYKAVSQQIREIFAEYTPLIEPLSLDEAYL 114
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-P 126
D+TE + I+ EIA E+R + + GL SAG++ N+ LAK+ SD+NKPNGQ V+ P
Sbjct: 115 DVTENLKGMDIA-TEIALEIRAKIKQVTGLNASAGISYNKFLAKMASDLNKPNGQAVITP 173
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFF 186
+ +A F+ +LP++K G+G T + + GI+T ++ +K + +F
Sbjct: 174 RNGLA---FVEALPVKKFHGVGPATAEKMHRL-GIDTGADLKEKTLEFLVEHFGKSGPYF 229
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRK-LAEIAEMLSADMQKEGLRGR 245
+ G+ R RKS+ +E TFS R+ L + E + A + + +
Sbjct: 230 YGIARGIDERRVKPDRVRKSVGAEDTFSQDLHSYEPAREGLQPLIEKVWAYCEANAIGAK 289
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQF 301
T+TLK+K A F TR+ T+ + D+ LL P+ +RL+G+ ++
Sbjct: 290 TVTLKVKYADFNQITRSKTVPAALPGITDLEDIVDFLLAPIFPLRKGIRLLGVSLSSL 347
>gi|383480538|ref|YP_005389432.1| DNA polymerase IV protein DinP [Streptococcus pyogenes MGAS15252]
gi|383494519|ref|YP_005412195.1| DNA polymerase IV protein DinP [Streptococcus pyogenes MGAS1882]
gi|378928528|gb|AFC66734.1| DNA polymerase IV protein DinP [Streptococcus pyogenes MGAS15252]
gi|378930246|gb|AFC68663.1| DNA polymerase IV protein DinP [Streptococcus pyogenes MGAS1882]
Length = 364
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 113/316 (35%), Positives = 176/316 (55%), Gaps = 36/316 (11%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++G+ +AM A + CP+ IF+ ++ KY D R++F +Y S+DEAYL
Sbjct: 61 ARKYGIHSAMSSKEAYERCPKAIFISGNYEKYRTVGDQIRRIFKRYTDVVEPMSIDEAYL 120
Query: 68 DITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVL 125
D+T+ + GI S ++IA+ ++ +++E GLTCSAGV+ N+ LAK+ SD KP+G VL
Sbjct: 121 DVTD--NKLGIKSAVKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKPHGLTLVL 178
Query: 126 PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADF 185
D + F++ LPI K G+GK + L D+ GI T +++L AV + D
Sbjct: 179 KED---ALCFLAKLPIEKFHGVGKKSVEKLHDM-GIYTGQDLL-------AVPEMTLIDH 227
Query: 186 FLSVGLGL-----GSTNTP--QARFRKSISSERTFSVTEDKALLYRKL---AEI---AEM 232
F G L G +N+P R RKSI SERT++ LLY++ AEI A+
Sbjct: 228 FGRFGFDLYRKARGISNSPVKSDRIRKSIGSERTYA-----KLLYQETDIKAEISKNAKR 282
Query: 233 LSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVS 290
++A +Q G+T+ LK++ A F T+ VTL + ++ I + A + +E P
Sbjct: 283 VAALLQDHKKLGKTIVLKVRYADFTTLTKRVTLPELTRNAAQIEQVAGDIFDSLSENPAG 342
Query: 291 LRLIGLRVTQFNEDKV 306
+RL+G+ +T EDKV
Sbjct: 343 IRLLGVIMTNL-EDKV 357
>gi|50914926|ref|YP_060898.1| DNA polymerase IV [Streptococcus pyogenes MGAS10394]
gi|306826715|ref|ZP_07460017.1| DNA-directed DNA polymerase IV [Streptococcus pyogenes ATCC 10782]
gi|73620812|sp|Q5XA48.1|DPO4_STRP6 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|50904000|gb|AAT87715.1| DNA polymerase IV [Streptococcus pyogenes MGAS10394]
gi|304431004|gb|EFM34011.1| DNA-directed DNA polymerase IV [Streptococcus pyogenes ATCC 10782]
Length = 364
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 113/316 (35%), Positives = 175/316 (55%), Gaps = 36/316 (11%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++G+ +AM A + CP+ IF+ ++ KY D R++F +Y S+DEAYL
Sbjct: 61 ARKYGIHSAMSSKEAYERCPKAIFISGNYEKYRTVGDQIRRIFKRYTDVVEPMSIDEAYL 120
Query: 68 DITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVL 125
D+T + GI S ++IA+ ++ +++E GLTCSAGV+ N+ LAK+ SD KP+G VL
Sbjct: 121 DVTN--NKLGIKSAVKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKPHGLTLVL 178
Query: 126 PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADF 185
D + F++ LPI K G+GK + L D+ GI T +++L AV + D
Sbjct: 179 KED---ALCFLAKLPIEKFHGVGKKSVEKLHDM-GIYTGQDLL-------AVPEMTLIDH 227
Query: 186 FLSVGLGL-----GSTNTP--QARFRKSISSERTFSVTEDKALLYRKL---AEI---AEM 232
F G L G +N+P R RKSI SERT++ LLY++ AEI A+
Sbjct: 228 FGRFGFDLYRKARGISNSPVKSDRIRKSIGSERTYA-----KLLYQETDIKAEISKNAKR 282
Query: 233 LSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVS 290
++A +Q G+T+ LK++ A F T+ VTL + ++ I + A + +E P
Sbjct: 283 VAALLQDHKKLGKTIVLKVRYADFTTLTKRVTLPELTRNAAQIEQVAGDIFDSLSENPAG 342
Query: 291 LRLIGLRVTQFNEDKV 306
+RL+G+ +T EDKV
Sbjct: 343 IRLLGVTMTNL-EDKV 357
>gi|325918965|ref|ZP_08181032.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Xanthomonas vesicatoria ATCC 35937]
gi|325534810|gb|EGD06739.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Xanthomonas vesicatoria ATCC 35937]
Length = 359
Score = 152 bits (385), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 111/303 (36%), Positives = 167/303 (55%), Gaps = 15/303 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FG+R+AMP A +LCP+ +FVP DF +Y S R++F ++ SLDEAYL
Sbjct: 47 ARTFGIRSAMPALRAERLCPDAVFVPPDFARYKAVSRQVREIFHRHTDLVEPLSLDEAYL 106
Query: 68 DITEVCRERGIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP 126
D+T + G+ EIA+ +RT + +E LT SAG+APN+ LAK+ SD KP+GQFV+
Sbjct: 107 DVTHA--KTGMQLATEIAQLIRTQIRDETQLTASAGIAPNKFLAKIASDWRKPDGQFVIA 164
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM-LQKGSLLCAVFSHSTADF 185
R V F+ L + +I G+GKV + L GI T ++ L+ L A F S
Sbjct: 165 PSR--VDAFLLPLKVNRIPGVGKVMDGKL-AALGIVTVADLRLRPLEELQAHFG-SFGQS 220
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLR 243
G+ + +S+SSE TFS ED AL L + +AE ++
Sbjct: 221 LYRRARGIDERPVEPDQEVQSVSSEDTFS--EDLALDALDPHILRLAEKTWLATRRTERI 278
Query: 244 GRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELP--VSLRLIGLRVTQ 300
GRT+ LKLKT++F + TR+ T ++ +S + + + A L + ELP RL+G+ ++
Sbjct: 279 GRTVVLKLKTSNFRILTRSYTPEQPPASLDALAQIALALTRRVELPDETRYRLVGVGLSG 338
Query: 301 FNE 303
F++
Sbjct: 339 FSD 341
>gi|209559938|ref|YP_002286410.1| DNA polymerase IV [Streptococcus pyogenes NZ131]
gi|209541139|gb|ACI61715.1| DNA polymerase IV [Streptococcus pyogenes NZ131]
Length = 364
Score = 152 bits (385), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 113/316 (35%), Positives = 175/316 (55%), Gaps = 36/316 (11%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++G+ +AM A + CP+ IF+ ++ KY D R++F +Y S+DEAYL
Sbjct: 61 ARKYGIHSAMSSKEAYERCPKAIFISGNYEKYRTVGDQIRRIFKRYTDLVEPMSIDEAYL 120
Query: 68 DITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVL 125
D+T+ + GI S ++IA+ ++ +++E GLTCSAGV+ N+ LAK+ SD KP+G VL
Sbjct: 121 DVTD--NKLGIKSAVKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKPHGLTLVL 178
Query: 126 PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADF 185
D + F++ LPI K G+GK + L D+ GI T +++L AV + D
Sbjct: 179 KED---ALCFLAKLPIEKFHGVGKKSVEKLHDM-GIYTGQDLL-------AVPEMTLIDH 227
Query: 186 FLSVGLGL-----GSTNTP--QARFRKSISSERTFSVTEDKALLYRKL---AEI---AEM 232
F G L G +N+P R RKSI SERT++ LLY++ AEI A+
Sbjct: 228 FGRFGFALYRKARGISNSPVKSDRIRKSIGSERTYA-----KLLYQETDIKAEISKNAKR 282
Query: 233 LSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVS 290
++A Q G+T+ LK++ A F T+ VTL + ++ I + A + +E P
Sbjct: 283 VAALFQDHKKLGKTIVLKVRYADFTTLTKRVTLPELTRNAAQIEQVAGDIFDSLSENPAG 342
Query: 291 LRLIGLRVTQFNEDKV 306
+RL+G+ +T EDKV
Sbjct: 343 IRLLGVTMTNL-EDKV 357
>gi|440782777|ref|ZP_20960697.1| DNA polymerase IV [Clostridium pasteurianum DSM 525]
gi|440219823|gb|ELP59033.1| DNA polymerase IV [Clostridium pasteurianum DSM 525]
Length = 347
Score = 152 bits (384), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 102/302 (33%), Positives = 167/302 (55%), Gaps = 11/302 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FGVR+AMP ++A+ CP IF+P + +Y S+ +F + S+DEAYL
Sbjct: 48 ARAFGVRSAMPIYMAKAKCPNGIFLPVRYERYKEISNKIFDIFNEITTLIEPLSIDEAYL 107
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T V R+ + IA ++ + +E GL S G++ N+ LAK+ SD NKPNG ++
Sbjct: 108 DLTHVNRD----SLYIASFIKNRIKKETGLNISIGLSYNKFLAKLASDWNKPNGLKIIKK 163
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFF 186
+ + F L I K+ G+GK + L ++ GI T EE+ + + L +F + +
Sbjct: 164 SDVPKILF--PLSIDKVHGLGKKSVKKLNNI-GIFTVEELYKLSVNFLVDLFGKFGPEIY 220
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTF-SVTEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
+ G+ + R RKSI E T + T+D+ + + A ++ M+ + L G+
Sbjct: 221 DRIR-GIDNREVKILRERKSIGKETTLINDTDDEEDIKPYIKSFASSIANIMKNKNLSGK 279
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHA-SVLLKAELPVSLRLIGLRVTQFNED 304
+T+K++TASF T++ TL YI+S EDI + A S+L K +L +RLIG+ ++ F E
Sbjct: 280 NITIKIRTASFINHTKSKTLTYYINSEEDIYREACSILEKLKLEEKIRLIGISISSFKEK 339
Query: 305 KV 306
K+
Sbjct: 340 KI 341
>gi|408673241|ref|YP_006872989.1| DNA polymerase IV [Emticicia oligotrophica DSM 17448]
gi|387854865|gb|AFK02962.1| DNA polymerase IV [Emticicia oligotrophica DSM 17448]
Length = 355
Score = 152 bits (384), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 107/295 (36%), Positives = 160/295 (54%), Gaps = 13/295 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR+AM IA++ CP LIFV F Y S R++F +Y P SLDEAYL
Sbjct: 48 ARKFGVRSAMSSRIAKQKCPSLIFVKPRFEVYKQVSREIREIFLEYTPLVEPLSLDEAYL 107
Query: 68 DITEVCRERGIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL- 125
D+TE +GI+ EIA+E++ + E+ LT SAGV+ N+ LAK+ SD KP+G FV+
Sbjct: 108 DVTENL--KGIATATEIAQEIKVRIKEKTTLTASAGVSVNKFLAKIASDYRKPDGLFVIK 165
Query: 126 PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADF 185
P+ A F+ L I K GIG+VT + + GI T +E+ +K +
Sbjct: 166 PSQAEA---FVEKLEIAKFHGIGRVTAEKMHKM-GIFTGKELREKSLEFLVNNFGKVGRY 221
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTF--SVTEDKALLYRKLAEIAEMLSADMQKEGLR 243
+ + G+ + + RKS+ E TF +TE LY +L +I E L MQ+
Sbjct: 222 YHDIARGIDNRSVNPDSIRKSVGVENTFDRDLTEPDD-LYHELDDIIEQLWRRMQRANAF 280
Query: 244 GRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKA--ELPVSLRLIGL 296
G+++TLK+K A F+ TR+ T + + + K + +L LP +RL+G+
Sbjct: 281 GKSITLKIKFADFDTITRSRTTHLPVFEKDFLAKVSYEMLNNLFPLPKGVRLMGV 335
>gi|386363358|ref|YP_006072689.1| impB/mucB/samB family protein [Streptococcus pyogenes Alab49]
gi|350277767|gb|AEQ25135.1| impB/mucB/samB family protein [Streptococcus pyogenes Alab49]
Length = 364
Score = 152 bits (384), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 113/316 (35%), Positives = 175/316 (55%), Gaps = 36/316 (11%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++G+ +AM A + CPE IF+ ++ KY + R++F +Y S+DEAYL
Sbjct: 61 ARKYGIHSAMSSKEAYERCPEAIFISGNYEKYRTVGEQIRRIFKRYTDVVEPMSIDEAYL 120
Query: 68 DITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVL 125
D+T + GI S ++IA+ ++ +++E GLTCSAGV+ N+ LAK+ SD KP+G VL
Sbjct: 121 DVTN--NKLGIKSAVKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKPHGLTLVL 178
Query: 126 PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADF 185
D + F++ LPI K G+GK + L D+ GI T +++L AV + D
Sbjct: 179 KED---ALCFLAKLPIEKFHGVGKKSVEKLHDM-GIYTGQDLL-------AVPEMTLIDH 227
Query: 186 FLSVGLGL-----GSTNTP--QARFRKSISSERTFSVTEDKALLYRKL---AEI---AEM 232
F G L G +N+P R RKSI SERT++ LLY++ AEI A+
Sbjct: 228 FGRFGFDLYRKARGISNSPVKSDRIRKSIGSERTYA-----KLLYQETDIKAEISKNAKR 282
Query: 233 LSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVS 290
++A +Q G+T+ LK++ A F T+ VTL + ++ I + A + +E P
Sbjct: 283 VAALLQDHKKLGKTIVLKVRYADFTTLTKRVTLPELTRNAAQIEQVAGDIFDSLSENPAG 342
Query: 291 LRLIGLRVTQFNEDKV 306
+RL+G+ +T EDKV
Sbjct: 343 IRLLGVTMTNL-EDKV 357
>gi|406040038|ref|ZP_11047393.1| DNA polymerase IV [Acinetobacter ursingii DSM 16037 = CIP 107286]
Length = 351
Score = 152 bits (384), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 104/300 (34%), Positives = 164/300 (54%), Gaps = 13/300 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG+R+AM ARKLCP+++ + +F KY S +F +Y SLDEAYL
Sbjct: 47 ARKFGLRSAMSMGQARKLCPDVVVIEPNFEKYRAVSAQIHHIFQQYTSMIEPLSLDEAYL 106
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+TE + S +IA ++R +++ GLT SAGVAPN+ LAK+ SD NKP+G V+
Sbjct: 107 DVTENFKNLP-SATDIAIQIRQEIFKVTGLTASAGVAPNKFLAKIASDWNKPDGLCVIKP 165
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHSTADFF 186
+ V FI LP++KI G+G+VT+ L+ + + T ++ + + ++L F F
Sbjct: 166 SQ--VQAFIQDLPLKKIPGVGRVTQEKLQQL-QLETLGDLQRIEENVLIHHFGKYGKQLF 222
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTF--SVTEDKALLYRKLAEIAEMLSADMQKEGLRG 244
L G+ R R+ IS E TF + ++ L Y +AE + ++Q + L
Sbjct: 223 L-YAQGIDHRTVQAERERQQISKETTFDGDLYLNECLAY--WPPLAEKVWNNLQHKQLTA 279
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELPVSL--RLIGLRVTQF 301
R +++KLK +F++ + + ++ I S ++L VLL + LP RLIGL V Q
Sbjct: 280 RGVSIKLKLKNFQIYQHSKSFKRPIQSFAELLDILQVLLYEMHLPAEFQYRLIGLGVYQL 339
>gi|256426123|ref|YP_003126776.1| DNA-directed DNA polymerase [Chitinophaga pinensis DSM 2588]
gi|256041031|gb|ACU64575.1| DNA-directed DNA polymerase [Chitinophaga pinensis DSM 2588]
Length = 371
Score = 152 bits (384), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 103/303 (33%), Positives = 169/303 (55%), Gaps = 15/303 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR+AMP A +LCPELIF+ F Y S R++F ++ SLDEA+L
Sbjct: 57 ARKFGVRSAMPSKRALQLCPELIFIRPRFDVYKEASRKIREIFSRHTDIIEPLSLDEAFL 116
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLP 126
D+TE ++ G S IEIA+ ++ ++ +E LT SAGV+ N+ +AK+ SD+NKP+G F+ P
Sbjct: 117 DVTEDKQQIG-SAIEIAKLIKQAIKDELQLTASAGVSVNKFVAKIASDLNKPDGLTFIGP 175
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFF 186
+ ++ +F+ LP+ K G+GKVT ++ + G++T ++ + F+
Sbjct: 176 S---SIESFMEKLPVEKFFGVGKVTADKMKRM-GLHTGADLKRLSENDLKTHFGKVGAFY 231
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFSV----TEDKALLYRKLAEIAEMLSADMQKEGL 242
+ G+ R KS+ +E TF TE+ + +L +IA + +++ GL
Sbjct: 232 YRIVRGIDEREVQPHRETKSLGAEDTFPYDLTRTEE---MNAELEKIAVTVYERLKRYGL 288
Query: 243 RGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELP--VSLRLIGLRVTQ 300
+GRT+TLK+K + F TR + + E IL+ A LL + P +RL+G+ ++
Sbjct: 289 KGRTVTLKIKYSDFRQITRNQSFPVPVGDLEKILETAKQLLLSTEPEDKPVRLLGISLSN 348
Query: 301 FNE 303
F E
Sbjct: 349 FGE 351
>gi|71756035|ref|XP_828932.1| DNA polymerase kappa [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|70834318|gb|EAN79820.1| DNA polymerase kappa, putative [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
Length = 571
Score = 152 bits (384), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 98/314 (31%), Positives = 163/314 (51%), Gaps = 24/314 (7%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR G+R MPGF+A K+CP L+ +P D Y S++ R++ +YDPN++ LD+ L
Sbjct: 175 ARGRGIRQGMPGFLALKICPNLLLLPPDDDSYYLESNIVRRIVAEYDPNYIVVGLDDFTL 234
Query: 68 DITE-VCRERGISGIE-IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL 125
+++ + R G E +A ELR V+ E LT SAG+ P LAK+ S+INKPNGQ L
Sbjct: 235 EVSAYIERFEGTKTAEDVASELRVRVFGETKLTASAGIGPTAALAKIASNINKPNGQHDL 294
Query: 126 P-NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTAD 184
+ R VMT++ L +R + G+GKVTE +L+ GI T ++ + LC + ++
Sbjct: 295 NLHTRGDVMTYVRDLGLRSVPGVGKVTEALLKG-LGITTLSDIYNRRVELCYILHNNLFR 353
Query: 185 FFLSVGLGL-------GSTNT-----PQARFRKSISSERTFSVTEDKALLYRKLAEIAEM 232
F L +G+ + NT RK+ISSER+ + K + + +
Sbjct: 354 FLLGASIGIMQWPDAATAANTENCEGATGEQRKAISSERSITTPRTKEGMQEMVDTVFNG 413
Query: 233 LSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLR 292
+M+K + R ++L ++ AS+ + +L +Y S + + L+ LP + +
Sbjct: 414 AYEEMRKSEIMCRRISLTIRWASYRYQQYTKSLIQYSDDSATLRRAVDELM---LPHAAK 470
Query: 293 -----LIGLRVTQF 301
L+G+R++
Sbjct: 471 YSEMCLLGVRLSDL 484
>gi|291514181|emb|CBK63391.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Alistipes shahii WAL 8301]
Length = 356
Score = 152 bits (383), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 101/295 (34%), Positives = 160/295 (54%), Gaps = 13/295 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR +GV +A+ +A++LCPELIFVP F Y S R +F +Y SLDEA+L
Sbjct: 49 ARPYGVHSALSSVLAKRLCPELIFVPARFDVYKAVSRQIRAIFGEYTELVEPLSLDEAFL 108
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D++ V S +A E++ + E GLT SAG++ N++LAK+ SD KP+G F +P
Sbjct: 109 DVSHVR-----SATLVAREIKAHILAETGLTASAGISVNKMLAKIASDYRKPDGLFTIPP 163
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM-LQKGSLLCAVFSHSTADFF 186
+R + F++ LP+ + GIG+VT + + GI T ++ L + L F + ++
Sbjct: 164 ER--IEEFVAGLPVERFFGIGEVTAEKMHRL-GIRTGADLRLWNEAALVQQFGKAGHSYY 220
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
G+ R RKS+ +E TF+ T+D+ L +L+ + E + + + RG+
Sbjct: 221 -GYARGIDEREVTPNRVRKSLGAETTFAEDTDDRERLRLELSAVREEVWNRVMRHEFRGK 279
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAE--LPVSLRLIGLRV 298
T+ LKLK +F TR+ TL + S+E + + + LL A +RLIGL V
Sbjct: 280 TVVLKLKFDNFRQITRSKTLFTPVDSAETLRRVSEELLAAADFHGRKIRLIGLTV 334
>gi|325280117|ref|YP_004252659.1| DNA polymerase IV [Odoribacter splanchnicus DSM 20712]
gi|324311926|gb|ADY32479.1| DNA polymerase IV [Odoribacter splanchnicus DSM 20712]
Length = 363
Score = 152 bits (383), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 112/329 (34%), Positives = 169/329 (51%), Gaps = 37/329 (11%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG+R+AM A KLCP+LIFV Y S+ ++F +Y +LDEA+L
Sbjct: 52 ARKFGIRSAMSSMQALKLCPDLIFVRGRMEHYKAVSEEIHRIFHEYTDLIEPLALDEAFL 111
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+TE + ++ ++IA ++ + E+ GL SAGV+ N+ LAK+ SD KP+G FV+
Sbjct: 112 DVTENKKNIPLA-VDIARAIKKEIREKLGLVASAGVSYNKFLAKIASDYRKPDGLFVIHP 170
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM-----------LQKGSLLCA 176
+ A FI+ LPI GIGKVT H + GI+ ++ K L
Sbjct: 171 RKAA--AFIARLPIEVFWGIGKVTAHKMH-ALGIHNGAQLRNCSLEFLNRNFGKAGQLYY 227
Query: 177 VFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLS 234
FSH G+ R RKS+ E TF +T AL+ +L +A+ L
Sbjct: 228 DFSH-----------GVDLRPVEVVRIRKSVGCENTFEKDLTTHTALII-ELWHVADELI 275
Query: 235 ADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS---L 291
+ K G +G TLTLK+K F +TR++++ + + ++IL A LL A L ++ +
Sbjct: 276 RRLGKAGFKGHTLTLKIKFHDFTQKTRSISVGHELYTMKEILPLAKQLL-AGLQLTHYRI 334
Query: 292 RLIGLRVTQFNEDKVRAPSDPTQKTLTNF 320
RL+GL V+ + V +P DP Q T
Sbjct: 335 RLMGLTVS----NPVSSPDDPEQGIPTQL 359
>gi|254369305|ref|ZP_04985317.1| DNA polymerase IV [Francisella tularensis subsp. holarctica FSC022]
gi|157122255|gb|EDO66395.1| DNA polymerase IV [Francisella tularensis subsp. holarctica FSC022]
Length = 349
Score = 152 bits (383), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 107/297 (36%), Positives = 166/297 (55%), Gaps = 17/297 (5%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR +GVR+AMP IA + CP LI + TDF KY S + R +F + SLDEAYL
Sbjct: 51 AREYGVRSAMPTAIAMQKCPNLILLNTDFAKYKAASAVIRDIFYSFTDKVEPLSLDEAYL 110
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T+V +E S IA+ ++ ++ + GLT SAGVAPN+LLAK+ SDINKPNG +V+
Sbjct: 111 DVTDV-KEYKNSATLIAQAIKQEIFNKTGLTGSAGVAPNKLLAKIASDINKPNGLYVVTP 169
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAV--FSHSTADF 185
+ V +F+ LP++K+ G+GKV++ L+ + G+ TC + LQ+ SL V F +
Sbjct: 170 KQ--VDSFVKDLPVKKLFGVGKVSQEKLKSM-GVETCLD-LQQLSLATLVDKFGKFGSSL 225
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALL---YRKLAEIAEMLSADMQKEGL 242
+ + G+ + R RKSIS E T+ ED L KL + + L++ M +E
Sbjct: 226 Y-NYARGIDNREVNPVRIRKSISVENTY--LEDLKTLGACLEKLPSLYDKLTSRMTEEHY 282
Query: 243 RGRT-LTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRV 298
+ + +K F +T + K + +++LK+ + L + +RLIG+ V
Sbjct: 283 KSIIGIVVKFTDTKFN-KTSLTRVAKIL--DKEMLKNLIIELHQKRNHPIRLIGIGV 336
>gi|349701936|ref|ZP_08903565.1| DNA polymerase IV [Gluconacetobacter europaeus LMG 18494]
Length = 361
Score = 152 bits (383), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 101/297 (34%), Positives = 151/297 (50%), Gaps = 11/297 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFGVR+AMP A + CP+L+FVP F Y S +F ++ P SLDEAYL
Sbjct: 53 ARRFGVRSAMPSVTALRKCPDLLFVPPRFDVYRAVSARIHDIFSRFTPLIQPLSLDEAYL 112
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T + S IA+ +R + EE GLT SAGV+ N+ LAK+ SD +KP+GQFV+
Sbjct: 113 DVTHPLQPYP-SATAIAQAIRDLIREETGLTASAGVSYNKFLAKLASDYHKPDGQFVI-T 170
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH--STADF 185
RM F++ LP+ + GIG T + GI T ++ Q+ L + H ADF
Sbjct: 171 PRMGA-DFVAGLPVEEFHGIGPATAARMH-ALGIRTGLDLRQQP--LSRLLRHFGKAADF 226
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRG 244
+ + G+ R R+S+ +E+TF D +A+++ + L G
Sbjct: 227 YYGIARGIDERPVEVNRPRRSVGAEKTFEADIHDWPAACNSVADLSARVWDRCTARSLTG 286
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKA--ELPVSLRLIGLRVT 299
T+T+K+K F R T + + + D+ A LL P +RL+G+ V+
Sbjct: 287 VTVTIKVKYNDFRQIVRGRTAAEPVRDAGDLTDRAQALLAPCFPPPRGIRLLGITVS 343
>gi|71911381|ref|YP_282931.1| DNA polymerase IV [Streptococcus pyogenes MGAS5005]
gi|71854163|gb|AAZ52186.1| DNA polymerase IV [Streptococcus pyogenes MGAS5005]
Length = 364
Score = 152 bits (383), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 112/316 (35%), Positives = 176/316 (55%), Gaps = 36/316 (11%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++G+ +AM A + CP+ IF+ ++ KY D R++F +Y S+DEAYL
Sbjct: 61 ARKYGIHSAMSSKEAYERCPKAIFISGNYEKYRTVGDQIRRIFKRYTDVVEPMSIDEAYL 120
Query: 68 DITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVL 125
D+T+ + GI S ++IA+ ++ +++E GLTCSAGV+ N+ LAK+ SD KP+G VL
Sbjct: 121 DVTD--NKLGIKSAVKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKPHGLTLVL 178
Query: 126 PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADF 185
D + F++ LPI K G+GK + L D+ GI T +++L AV + D
Sbjct: 179 KED---ALCFLAKLPIEKFHGVGKKSVKKLHDM-GIYTGQDLL-------AVPEMTLIDH 227
Query: 186 FLSVGLGL-----GSTNTP--QARFRKSISSERTFSVTEDKALLYRKL---AEIA---EM 232
F G L G +N+P R RKSI SERT++ LLY++ AEI+ +
Sbjct: 228 FGRFGFDLYRKARGISNSPVKSDRIRKSIGSERTYA-----KLLYQETDIKAEISKNVKR 282
Query: 233 LSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVS 290
++A +Q G+T+ LK++ A F T+ VTL + ++ I + A + +E P
Sbjct: 283 VAALLQDHKKLGKTIVLKVRYADFTTLTKRVTLPELTRNAAQIEQVAGDIFDSLSENPAG 342
Query: 291 LRLIGLRVTQFNEDKV 306
+RL+G+ +T EDKV
Sbjct: 343 IRLLGVTMTNL-EDKV 357
>gi|392329945|ref|ZP_10274561.1| DNA polymerase IV [Streptococcus canis FSL Z3-227]
gi|391419817|gb|EIQ82628.1| DNA polymerase IV [Streptococcus canis FSL Z3-227]
Length = 364
Score = 152 bits (383), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 111/315 (35%), Positives = 176/315 (55%), Gaps = 34/315 (10%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++G+ +AM A + CP+ IF+ ++ KY R++F +Y S+DEAYL
Sbjct: 61 ARKYGIHSAMSSKEAYERCPKAIFISGNYDKYRSVGHQIRRIFRRYTDLVEPMSIDEAYL 120
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLP 126
D+T+ + S ++IA+ ++ +++E GLTCSAGV+ N+ LAK+ SD KP G VLP
Sbjct: 121 DVTDNKLDIK-SAVKIAKLIQHDIWQEVGLTCSAGVSYNKFLAKLASDFEKPRGLTLVLP 179
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFF 186
D ++F++ LPI K G+GK + L D+ GI T +++L AV + D F
Sbjct: 180 QD---ALSFLAKLPIEKFHGVGKKSVEKLHDM-GIYTGQDLL-------AVPEMTLIDHF 228
Query: 187 LSVGLGL-----GSTNTPQA--RFRKSISSERTFSVTEDKALLYRKL---AEI---AEML 233
G L G +++P R RKSI SERT++ LLY++ AEI A+ +
Sbjct: 229 GRFGFDLYRKARGISHSPVKPDRIRKSIGSERTYA-----KLLYQETDIKAEISKNAKRV 283
Query: 234 SADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKA--ELPVSL 291
+A +Q+ G+T+ LK++ A F T+ VTL + + I + A+ + + E PV +
Sbjct: 284 AALLQEHKKLGKTVVLKVRYADFTTLTKRVTLTELTREAAQIEQVAADIFDSLIENPVGI 343
Query: 292 RLIGLRVTQFNEDKV 306
RL+G+ +T EDKV
Sbjct: 344 RLLGVTMTNL-EDKV 357
>gi|401424996|ref|XP_003876983.1| putative DNA polymerase kappa [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322493227|emb|CBZ28512.1| putative DNA polymerase kappa [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 753
Score = 152 bits (383), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 116/363 (31%), Positives = 174/363 (47%), Gaps = 59/363 (16%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEA-- 65
AR++GV++ MPGFI +LCP+L+ VPTDF S + V YDP+ +DE
Sbjct: 273 ARKYGVQSGMPGFIGMRLCPQLVIVPTDFAACRVESAKFKGVVRDYDPDAQLLGMDEVMM 332
Query: 66 ---------YLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDI 116
++D T R ++ + EE R + E GLT SAG+AP LAK+ S+
Sbjct: 333 CLDDYLARHHVDATTHARRFDVAE-RVIEECRRRIAEATGLTVSAGIAPTPTLAKMASNY 391
Query: 117 NKPNGQFVLP-NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLC 175
NKPNGQF + R AVM +++S+P+R++ GIGK E +L + GI T E+ ++ L
Sbjct: 392 NKPNGQFAVRLFSREAVMNYLASIPVRQVPGIGKSRESVLAGL-GIRTLGEVYEQRHRLF 450
Query: 176 AVFSHSTADFFLSVGLGLGST-----NTPQARF---------------------RKSISS 209
+ + T +F L+ +G+G P + RKS+
Sbjct: 451 YILTRKTYEFLLASSIGIGGMYDSLETAPSSSAGATAGQTVAAMDGASNEDDGGRKSVGH 510
Query: 210 ERTFSVTED----KALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTL 265
ERTF + +A+ Y+ L E L+ +EGL + LKLK SF V+ + +L
Sbjct: 511 ERTFYKLTNPMALQAIAYKNLRRSHETLA----EEGLLCSQVVLKLKRRSFHVKQHSKSL 566
Query: 266 QKYISSSEDILKHASVLLKAELPV-----SLRLIGLRVTQFNEDKVRAPSDPTQKTLTNF 320
Y E + + LL LPV RL+G+R+ + + R SD T T
Sbjct: 567 NVYTDDHEVLRRALDELL---LPVVGDFAEFRLLGVRLEKL---RRRPQSDGTGGATTLT 620
Query: 321 MTS 323
+TS
Sbjct: 621 VTS 623
>gi|456877106|gb|EMF92144.1| ImpB/MucB/SamB family protein [Leptospira santarosai str. ST188]
Length = 360
Score = 152 bits (383), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 103/305 (33%), Positives = 164/305 (53%), Gaps = 18/305 (5%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGV +AMP A +L P IFV F Y SD R++F +Y SLDE YL
Sbjct: 50 ARKFGVHSAMPCSKAAQLAPRAIFVFPRFEVYKEVSDRIREIFLEYTDRVEMLSLDEGYL 109
Query: 68 DITEVCRERGIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVL 125
D+T ++ I ++IA+E+R+ +++ LT SAGV ++ +AK+ S+ NKPNG VL
Sbjct: 110 DVT--FNKKNIPFAVKIAKEIRSEIFKRTELTASAGVGNSKFIAKLASEKNKPNGLTVVL 167
Query: 126 PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADF 185
P+D V FI LPI G+GKVT ++ + GI+T +++ K T +
Sbjct: 168 PDD---VTAFIDPLPIGSFHGVGKVTAQKMKKL-GIHTGKDLRTKNINELVQHFGKTGIY 223
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSVTE-DKALLYRKLAEIAEMLSADMQKEGLRG 244
+ + G R RKS+ SE TF + D+ L+R+L EIA ++K G
Sbjct: 224 YYKISRGEDEREVEPFRERKSLGSENTFDQDKTDREDLFRQLREIAVETERRLKKRNFAG 283
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV---------SLRLIG 295
+TLTLK+K F ++TR+ TL + I +++++ A+ L + + ++RL+G
Sbjct: 284 KTLTLKIKFQDFSLKTRSKTLSEPIFNADELYSIAAELFEEFFEIKDGKQTPTKAIRLLG 343
Query: 296 LRVTQ 300
+ ++
Sbjct: 344 INLSH 348
>gi|399924340|ref|ZP_10781698.1| DNA polymerase IV [Peptoniphilus rhinitidis 1-13]
Length = 348
Score = 152 bits (383), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 101/305 (33%), Positives = 159/305 (52%), Gaps = 11/305 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++G+ +AMP ++A+ LC LI +P +Y S V Y S+DE+YL
Sbjct: 47 ARKYGIHSAMPMYMAKNLCDHLIIMPMRRDRYLEKSREVFDVLKTYTKVIEKVSIDESYL 106
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
DI + + I E++ VY GL S G++ N+ LAK+ SD NKP G ++
Sbjct: 107 DIEGLGYDENI-----VYEIQKDVYNRTGLNVSIGMSYNKFLAKLASDWNKPKGIMIIKK 161
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFF 186
+ + F L IRK+ GIGK +E LR++ GINT EE+ L ++F S + +
Sbjct: 162 RDIPEILF--PLDIRKVHGIGKKSEKKLRNI-GINTVEELYSLSYDFLVSMFKKSGEEIY 218
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRT 246
+ G+ + RKS+ +E TF VT + L L E + +S D+ + + G T
Sbjct: 219 NRIR-GIDNRKVTPNTVRKSLGTETTFEVTSKRDELIGYLKEFSHEISEDLIVKEISGYT 277
Query: 247 LTLKLKTASFEVRTRAVTLQKYISSSEDILKHA-SVLLKAELPVSLRLIGLRVTQFNEDK 305
LTLK+K F+V+TR+ T +K I + +DI K + + +A LRLIG+ ++ +
Sbjct: 278 LTLKMKNEDFKVKTRSKTYEKAIYAEDDIYKKSLEIFDEAYGGEKLRLIGITISNLADLS 337
Query: 306 VRAPS 310
+R S
Sbjct: 338 IRQLS 342
>gi|421892458|ref|ZP_16323115.1| DNA polymerase IV [Streptococcus pyogenes NS88.2]
gi|379981806|emb|CCG26837.1| DNA polymerase IV [Streptococcus pyogenes NS88.2]
Length = 364
Score = 152 bits (383), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 113/316 (35%), Positives = 174/316 (55%), Gaps = 36/316 (11%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++G+ +AM A + CP+ IF+ ++ KY D ++F +Y S+DEAYL
Sbjct: 61 ARKYGIHSAMSSKEAYERCPKAIFISGNYEKYRTVGDQIHRIFKRYTDVVEPMSIDEAYL 120
Query: 68 DITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVL 125
D+T+ + GI S ++IA+ ++ +++E GLTCSAGV+ N+ LAK+ SD KP+G VL
Sbjct: 121 DVTD--NKLGIKSAVKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKPHGLTLVL 178
Query: 126 PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADF 185
D M F++ LPI K G+GK + L D+ GI T +++L AV + D
Sbjct: 179 KED---AMCFLAKLPIEKFHGVGKKSVEKLHDM-GIYTGQDLL-------AVPEMTLIDH 227
Query: 186 FLSVGLGL-----GSTNTP--QARFRKSISSERTFSVTEDKALLYRKL---AEI---AEM 232
F G L G +N+P R RKSI SERT++ LLY++ AEI A+
Sbjct: 228 FGRFGFDLYRKARGISNSPVKSDRIRKSIGSERTYA-----KLLYQETDIKAEISKNAKR 282
Query: 233 LSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVS 290
++A +Q G+T+ LK++ A F T+ VTL + + I + A + +E P
Sbjct: 283 VAALLQDHKKLGKTIVLKVRYADFTTLTKRVTLPELTRNVAQIEQVAGDIFDSLSENPAG 342
Query: 291 LRLIGLRVTQFNEDKV 306
+RL+G+ +T EDKV
Sbjct: 343 IRLLGVTMTNL-EDKV 357
>gi|345882594|ref|ZP_08834057.1| DNA polymerase IV [Prevotella sp. C561]
gi|345044625|gb|EGW48656.1| DNA polymerase IV [Prevotella sp. C561]
Length = 358
Score = 152 bits (383), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 111/308 (36%), Positives = 170/308 (55%), Gaps = 33/308 (10%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR +GV +AM A++ CP+LI VPT F KY S VF +Y SLDEA+L
Sbjct: 39 ARPYGVHSAMSMAQAKRRCPQLIVVPTHFEKYKEVSQQIHAVFHEYTDLVEPISLDEAFL 98
Query: 68 DITEVCRERGIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP 126
D+T+ ++GI ++IA+E++ + E LT SAG++ N+LLAK+ SD+ KPNG F +
Sbjct: 99 DVTD--NKKGIELAVDIAKEIKQKILERTSLTASAGISFNKLLAKIASDMRKPNGIFTVH 156
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINT--------CEEMLQKGSLLCAVF 178
DR + FI SLP+ K+ G+G T + + ++ G+ T CE ++Q + V+
Sbjct: 157 PDR--ALDFIGSLPVEKLWGVGPKTANRMHEM-GVFTGAQLRRISCEHLVQVFGKMGRVY 213
Query: 179 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEM---LSA 235
DF G+ + A RKS+ ERTF ED + + + E+ + L
Sbjct: 214 Y----DF----SRGIDNRPVVVAYERKSVGCERTF--LEDLHIDTKIIIELYHIVLELVE 263
Query: 236 DMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK----AELPVSL 291
++++ RGRTLTLKLK + TR++T +K + + +DIL A LLK + P+
Sbjct: 264 RIERKDFRGRTLTLKLKWDATTQITRSLTQEKVLRTKDDILPLAKRLLKDTEYHDRPI-- 321
Query: 292 RLIGLRVT 299
RL+GL V+
Sbjct: 322 RLMGLSVS 329
>gi|15675671|ref|NP_269845.1| DNA polymerase IV [Streptococcus pyogenes SF370]
gi|22095631|sp|Q99Y66.1|DPO4_STRP1 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|13622885|gb|AAK34566.1| putative DNA-damage-inducible protein P [Streptococcus pyogenes M1
GAS]
Length = 364
Score = 152 bits (383), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 112/316 (35%), Positives = 176/316 (55%), Gaps = 36/316 (11%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++G+ +AM A + CP+ IF+ ++ KY D R++F +Y S+DEAYL
Sbjct: 61 ARKYGIHSAMSSKEAYERCPKAIFISGNYEKYRTVGDQIRRIFKRYTDVVEPMSIDEAYL 120
Query: 68 DITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVL 125
D+T+ + GI S ++IA+ ++ +++E GLTCSAGV+ N+ LAK+ SD KP+G VL
Sbjct: 121 DVTD--NKLGIKSAVKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKPHGLTLVL 178
Query: 126 PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADF 185
D + F++ LPI K G+GK + L D+ GI T +++L AV + D
Sbjct: 179 KED---ALCFLAKLPIEKFHGVGKKSVKKLHDM-GIYTGQDLL-------AVPEMTLIDH 227
Query: 186 FLSVGLGL-----GSTNTPQA--RFRKSISSERTFSVTEDKALLYRKL---AEIA---EM 232
F G L G +N+P R RKSI SERT++ LLY++ AEI+ +
Sbjct: 228 FGRFGFDLYRKARGISNSPVKYDRIRKSIGSERTYA-----KLLYQETDIKAEISKNVKR 282
Query: 233 LSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVS 290
++A +Q G+T+ LK++ A F T+ VTL + ++ I + A + +E P
Sbjct: 283 VAALLQDHKKLGKTIVLKVRYADFTTLTKRVTLPELTRNAAQIEQVAGDIFDSLSENPAG 342
Query: 291 LRLIGLRVTQFNEDKV 306
+RL+G+ +T EDKV
Sbjct: 343 IRLLGVTMTNL-EDKV 357
>gi|217979283|ref|YP_002363430.1| DNA-directed DNA polymerase [Methylocella silvestris BL2]
gi|217504659|gb|ACK52068.1| DNA-directed DNA polymerase [Methylocella silvestris BL2]
Length = 359
Score = 151 bits (382), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 104/299 (34%), Positives = 156/299 (52%), Gaps = 9/299 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FGVR+AMP AR+ CPELIFV F Y SD R +F +Y P SLDEAYL
Sbjct: 52 ARAFGVRSAMPSVTARRKCPELIFVKPRFDVYRAVSDEMRAIFAEYTPIIEPLSLDEAYL 111
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D++E +S EIA+++R + E LT SAGV+ N+ LAK+ SD KP+G FV+
Sbjct: 112 DVSETLNG-ALSATEIAQQIRAKIRERTNLTASAGVSYNKFLAKLASDHRKPDGLFVI-T 169
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM-LQKGSLLCAVFSHSTADFF 186
+M F+ LP+RK G+G T ++ + GI T ++ Q + + F + ++
Sbjct: 170 PKMGP-AFVEPLPVRKFHGVGPATAAKMKRL-GIETGFDLKAQSLAFMQQQFGKA-GPYY 226
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAE-IAEMLSADMQKEGLRGR 245
V G+ R RKS+ +E TF R+ E I + + + G GR
Sbjct: 227 YGVARGVDERPVRAHRIRKSVGAENTFFADLFTFEAAREAMEPIVDKVWRHCETAGAHGR 286
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFN 302
TLTLK+K A F+ TR+ T ++ ++ + + LL P +RL+G+ ++ +
Sbjct: 287 TLTLKVKYADFQQITRSRTGMTPFATRAELERQSLDLLAPLFPCDKGVRLLGVSLSSLD 345
>gi|424040926|ref|ZP_17778973.1| DNA polymerase IV [Vibrio cholerae HENC-02]
gi|408891302|gb|EKM29153.1| DNA polymerase IV [Vibrio cholerae HENC-02]
Length = 342
Score = 151 bits (382), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 117/315 (37%), Positives = 160/315 (50%), Gaps = 32/315 (10%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR+AMP A +LCP L+ VP Y S R +F +Y P SLDEAYL
Sbjct: 40 ARKFGVRSAMPTARALQLCPHLLVVPGRMHVYKQVSQQIRTIFERYTPLIEPLSLDEAYL 99
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T+ RG S IAE +R ++ E GLT SAG+AP + LAKV SD+NKPNGQFV+P
Sbjct: 100 DVTDSTACRG-SATLIAESIRNDIWNELGLTASAGIAPIKFLAKVASDMNKPNGQFVIPP 158
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFF 186
++ V + LP+ KI G+GKV+ L G CE++ L F A +
Sbjct: 159 EK--VQEVVDKLPLEKIPGVGKVSLEKLHQA-GFYLCEDIKNSDYRELLRQFGRQGASLW 215
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFS-----------VTEDKALLYRKLAEIAEMLSA 235
S G+ R RKS+ ERTFS V EDK LY +L + E
Sbjct: 216 -SRSHGIDDREVVVERERKSVGVERTFSENIVTYDECWQVIEDK--LYPELEKRLEKACP 272
Query: 236 D--MQKEGLRGRTLTLKLKTASFEVRT-RAVTLQKYISSSEDILKHASVLLKAELPVSLR 292
D + K+G +KLK A F++ T + Q + + +L+ +LK + +R
Sbjct: 273 DKSIIKQG-------IKLKFADFQLTTIEHIHPQLELDDFKALLRD---ILKRQNGREIR 322
Query: 293 LIGLRVTQFNEDKVR 307
L+GL V E + R
Sbjct: 323 LLGLSVMLKPEQQAR 337
>gi|240142517|ref|YP_002967028.1| DNA polymerase IV [Methylobacterium extorquens AM1]
gi|240012462|gb|ACS43687.1| DNA polymerase IV [Methylobacterium extorquens AM1]
Length = 408
Score = 151 bits (382), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 113/325 (34%), Positives = 170/325 (52%), Gaps = 33/325 (10%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR+AM A++ CPEL+FV F Y S R +F ++ P SLDEAYL
Sbjct: 102 ARKFGVRSAMASVTAKRKCPELVFVKPRFEVYREVSMAIRAIFAEHTPIIEPLSLDEAYL 161
Query: 68 DITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP 126
D+TE +G + EIA E++T++ E LT SAGV+ + LAK+ SD KP+G FV+
Sbjct: 162 DVTENL--KGFETATEIAREIKTAIRERLNLTASAGVSYQKFLAKIASDYRKPDGLFVI- 218
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADF 185
RM F+ +LP+ + GIG TE + + GI T ++ K + L F S A +
Sbjct: 219 TPRMGP-KFVLTLPVGRFHGIGPATEAKMARL-GIATGADLKSKSLAFLQEHFGKSGA-Y 275
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEM----------LSA 235
F + G+ R RKS+ +E TF R LA I EM + +
Sbjct: 276 FHGIARGVDHRPVRPDRIRKSVGAENTFE---------RDLAGIEEMREHLQPIVDKVWS 326
Query: 236 DMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSL--RL 293
G+RGRT+TLK+K + FE TR+ + + S +D+ A+ LL+ P+ L RL
Sbjct: 327 RCAATGVRGRTVTLKVKFSDFEQITRSRSTAVDVGSRDDLEGIAADLLRQLFPMRLGVRL 386
Query: 294 IGLRVTQFNEDKVRAPSDPTQKTLT 318
+G+ ++ + ++ +P Q +L
Sbjct: 387 LGVTMSGLDNER----EEPRQLSLA 407
>gi|420143241|ref|ZP_14650742.1| DNA polymerase IV (Pol IV) [Lactococcus garvieae IPLA 31405]
gi|391856760|gb|EIT67296.1| DNA polymerase IV (Pol IV) [Lactococcus garvieae IPLA 31405]
Length = 365
Score = 151 bits (382), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 104/311 (33%), Positives = 171/311 (54%), Gaps = 22/311 (7%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FG+ +AM A +LCP+ +F+ ++ KY S+ R++F +Y AAS+DEAYL
Sbjct: 61 ARAFGIHSAMSAKEAYELCPQAVFISGNYEKYRAISEQVREIFNRYTDEVEAASIDEAYL 120
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLP 126
D+T + S I++A+ ++ ++ E GLTCSAGV+ N+ LAK+ SD KP+G +LP
Sbjct: 121 DVTR-NKIGSTSAIKVAKLIQHDIFVELGLTCSAGVSYNKFLAKIASDYEKPHGLTVILP 179
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCA-VFSHSTADF 185
A F++ LP+ K G+GK T L ++ GI T E+ LL A F +
Sbjct: 180 E---AAKDFLAELPVEKFHGVGKATGAKLHEL-GIFTGAEIQAADPLLLAERFGVYGWNL 235
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLY------RKLAEIAEMLSADMQK 239
FL G+ +R RKS+ ERT+S LLY ++L ++E +S ++++
Sbjct: 236 FLKAN-GIHHAPVITSRQRKSVGKERTYS-----KLLYNSEDIKKELTNLSERVSTNLKR 289
Query: 240 EGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK---AELPVSLRLIGL 296
L G T+ LKL+ + F+ T+ L + I+ + + A LL+ + + +RL+G+
Sbjct: 290 HQLLGDTVVLKLRYSDFKTITKRKKLPEKINEATALAHVAQDLLEEVDYDETLGVRLLGV 349
Query: 297 RVTQFNEDKVR 307
+T F +++R
Sbjct: 350 TLTGFGAEELR 360
>gi|335429441|ref|ZP_08556339.1| DNA polymerase IV [Haloplasma contractile SSD-17B]
gi|334889451|gb|EGM27736.1| DNA polymerase IV [Haloplasma contractile SSD-17B]
Length = 398
Score = 151 bits (382), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 104/306 (33%), Positives = 171/306 (55%), Gaps = 20/306 (6%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGV +AMP + A+KLCP LI VP + Y YS Y S+DE YL
Sbjct: 53 ARQFGVSSAMPVYKAKKLCPHLIIVPGNMELYREYSKKFFDFLKTYTTQIEVGSIDEGYL 112
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+TE+ + + +E+A+E++T ++EE L CS G+APN+ LAK+ SD+ KP G VL
Sbjct: 113 DVTELAKSK--HPVELAKEIQTRLHEEIKLPCSIGIAPNKFLAKMASDMKKPLGITVL-- 168
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCA--VFSHSTADF 185
R V + S+PI K+ GIGK T L + I T ++ K + L A V + F
Sbjct: 169 RRRDVPDMLWSMPIGKMYGIGKKTAPKLLNE-EIKTIGDLANKENELKARKVLGNQYNHF 227
Query: 186 FLSVGLGLGSTNTPQARFR--KSISSERTFS---VTEDKALLYRKLAEIAEMLSADMQKE 240
+L+ G G++ +R KS+ + RT+S V + +A Y+KL E++EM+S + ++
Sbjct: 228 YLNAN-GYGNSKIDLSRHSDYKSVGNSRTYSKNIVKKQEA--YQKLDELSEMVSNRLIRK 284
Query: 241 GLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL---LKAELPVSLRLIGLR 297
+T+T++++ FE T++ T++K++++ ++ K L L + P+ RL+G+
Sbjct: 285 TYLAKTITVQIRYKDFETHTKSKTIEKHVNTKVELFKVIKRLFDELWNQNPI--RLLGVS 342
Query: 298 VTQFNE 303
+ E
Sbjct: 343 TSNIVE 348
>gi|375088530|ref|ZP_09734868.1| hypothetical protein HMPREF9703_00950 [Dolosigranulum pigrum ATCC
51524]
gi|374561495|gb|EHR32834.1| hypothetical protein HMPREF9703_00950 [Dolosigranulum pigrum ATCC
51524]
Length = 395
Score = 151 bits (382), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 102/301 (33%), Positives = 161/301 (53%), Gaps = 11/301 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG+ +AM A +LCP IF+P +FT Y S +F +Y SLDEAYL
Sbjct: 85 ARQFGIHSAMSAAKAYELCPRAIFIPPNFTLYRQISAQIHDIFYQYTDLVQPLSLDEAYL 144
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T ++ S IA++L+ +YE+ LTCSAGV+ N+ +AK+ SD KP+G V+
Sbjct: 145 DVTN-NKKSMPSATMIAQQLQKIIYEQTQLTCSAGVSYNKFIAKIASDYQKPSGLTVVTP 203
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFF 186
+ F+ LPI K G+G+ T + I T E++ Q+ L F +
Sbjct: 204 --ASAHHFLMQLPIEKFFGVGEKTLEKMH-ALNIYTGEDLYQQTLDDLMHRFGKMGYSLY 260
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRG 244
V G+ ++ R RKS+ E T++ +T D ++ ++L +++ A ++K L G
Sbjct: 261 HKVR-GIDNSPVVADRTRKSVGKESTYAHVITHDDEVI-QQLRRLSQQTFASLEKHRLHG 318
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFN 302
+T+ LK + ++F T+ TL YI S+ED+ AS L E V +RL+G+ VT N
Sbjct: 319 KTVVLKYRYSNFSTHTKRRTLFNYIHSAEDLFNIASDLWYEEGDVEQGVRLLGVTVTNLN 378
Query: 303 E 303
+
Sbjct: 379 K 379
>gi|392953721|ref|ZP_10319275.1| DNA-directed DNA polymerase [Hydrocarboniphaga effusa AP103]
gi|391859236|gb|EIT69765.1| DNA-directed DNA polymerase [Hydrocarboniphaga effusa AP103]
Length = 362
Score = 151 bits (382), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 111/300 (37%), Positives = 161/300 (53%), Gaps = 13/300 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR+AMP A +LCP+ IF P DFT+Y S R++F ++ SLDEAYL
Sbjct: 54 ARKFGVRSAMPAVRAERLCPDAIFTPPDFTRYRAVSRQVREIFLRHTDLVEPLSLDEAYL 113
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-P 126
D+T E + +A+ +R + EE LT SAGVAPN+ LAK+ SD NKP+G FV+ P
Sbjct: 114 DVTTNKTELP-TATAVAQCIREQIREELSLTASAGVAPNKFLAKIASDWNKPDGLFVIRP 172
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM-LQKGSLLCAVFSHSTADF 185
D + + LP+ ++ G+GKV E L ++ GI + ++ L+ + L A F
Sbjct: 173 GD---IDRVLPPLPVGRLPGVGKVMEGKLAEM-GIGSVGDLRLRTAAELEARFGRYGLRL 228
Query: 186 F-LSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRG 244
LS+G+ G R +SIS+E TF + L + +AE +K G
Sbjct: 229 HQLSLGIDHGEVKP--DRPTQSISAEDTFERDIPLSELEPHIRRMAEKAWNAARKTPRIG 286
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELPVS--LRLIGLRVTQF 301
RT+ LKLKTA F++ TR++T + S E A L + LP RL+G+ + F
Sbjct: 287 RTVVLKLKTADFQILTRSLTPGRPPESLERFANIAVELRDRVNLPADRLYRLVGVGLGNF 346
>gi|385833731|ref|YP_005871506.1| DNA-damage-inducible protein P [Lactococcus garvieae Lg2]
gi|343182884|dbj|BAK61222.1| DNA-damage-inducible protein P [Lactococcus garvieae Lg2]
Length = 365
Score = 151 bits (382), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 104/311 (33%), Positives = 170/311 (54%), Gaps = 22/311 (7%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FG+ +AM A +LCP+ +F+ ++ KY S+ R++F +Y AAS+DEAYL
Sbjct: 61 ARAFGIHSAMSAKEAYELCPQAVFISGNYEKYRAISEQVREIFNRYTDEVEAASIDEAYL 120
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLP 126
D+T + S I++A+ ++ ++ E GLTCSAGV+ N+ LAK+ SD KP G +LP
Sbjct: 121 DVTR-NKIGSTSAIKVAKLIQHDIFVELGLTCSAGVSYNKFLAKIASDYEKPYGLTVILP 179
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCA-VFSHSTADF 185
A F++ LP+ K G+GK T L ++ GI T E+ LL A F +
Sbjct: 180 E---AAKDFLAELPVEKFHGVGKATGAKLHEL-GIFTGAEIQAADPLLLAERFGVYGWNL 235
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLY------RKLAEIAEMLSADMQK 239
FL G+ +R RKS+ ERT+S LLY ++L ++E +S ++++
Sbjct: 236 FLKAN-GIHHAPVVTSRQRKSVGKERTYS-----KLLYNSEDIKKELTNLSERVSTNLKR 289
Query: 240 EGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK---AELPVSLRLIGL 296
L G T+ LKL+ + F+ T+ L + I+ + + A LL+ + + +RL+G+
Sbjct: 290 HQLLGDTVVLKLRYSDFKTITKRKKLSEKINEATTLAHVAQDLLEEVDYDETLGVRLLGV 349
Query: 297 RVTQFNEDKVR 307
+T F +++R
Sbjct: 350 TLTGFGAEELR 360
>gi|347522347|ref|YP_004779918.1| DNA-damage-inducible protein P [Lactococcus garvieae ATCC 49156]
gi|343180915|dbj|BAK59254.1| DNA-damage-inducible protein P [Lactococcus garvieae ATCC 49156]
Length = 365
Score = 151 bits (382), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 104/311 (33%), Positives = 170/311 (54%), Gaps = 22/311 (7%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FG+ +AM A +LCP+ +F+ ++ KY S+ R++F +Y AAS+DEAYL
Sbjct: 61 ARAFGIHSAMSAKEAYELCPQAVFISGNYEKYRAISEQVREIFNRYTDEVEAASIDEAYL 120
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLP 126
D+T + S I++A+ ++ ++ E GLTCSAGV+ N+ LAK+ SD KP G +LP
Sbjct: 121 DVTR-NKIGSTSAIKVAKLIQHDIFVELGLTCSAGVSYNKFLAKIASDYEKPYGLTVILP 179
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCA-VFSHSTADF 185
A F++ LP+ K G+GK T L ++ GI T E+ LL A F +
Sbjct: 180 E---AAKDFLAELPVEKFHGVGKATGAKLHEL-GIFTGAEIQAADPLLLAERFGVYGWNL 235
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLY------RKLAEIAEMLSADMQK 239
FL G+ +R RKS+ ERT+S LLY ++L ++E +S ++++
Sbjct: 236 FLKAN-GIHHAPVVTSRQRKSVGKERTYS-----KLLYNSEDIKKELTNLSERVSTNLKR 289
Query: 240 EGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK---AELPVSLRLIGL 296
L G T+ LKL+ + F+ T+ L + I+ + + A LL+ + + +RL+G+
Sbjct: 290 HQLLGDTVVLKLRYSDFKTITKRKKLSEKINEATTLAHVAQDLLEEIDYDETLGVRLLGV 349
Query: 297 RVTQFNEDKVR 307
+T F +++R
Sbjct: 350 TLTGFGAEELR 360
>gi|86156570|ref|YP_463355.1| DNA-directed DNA polymerase [Anaeromyxobacter dehalogenans 2CP-C]
gi|85773081|gb|ABC79918.1| DNA-directed DNA polymerase [Anaeromyxobacter dehalogenans 2CP-C]
Length = 418
Score = 151 bits (382), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 107/309 (34%), Positives = 167/309 (54%), Gaps = 17/309 (5%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVF---CKYDPNFMAASLDE 64
ARRFGVR+A+P AR+LCP+ +F+P F + YS+L+R+VF +Y P SLDE
Sbjct: 56 ARRFGVRSALPTARARRLCPDGVFLPPRFGR---YSELSRRVFDVYRRYTPLVEPLSLDE 112
Query: 65 AYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFV 124
A+LD+T R G +IA ++ +V E GL SAGVA ++ AK+ +D+ KP+G V
Sbjct: 113 AFLDVT-ASRALHGGGPDIARAIKAAVRGECGLAVSAGVADVKMAAKIATDLGKPDGLVV 171
Query: 125 LPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTA 183
+P V F++ LP+ ++ G+G+VTE LR + G+ T ++ + S L A + A
Sbjct: 172 VPPG--GVAAFLAPLPVGRLWGVGEVTEAALRRI-GVATIGDLARMPESALAAALGPTHA 228
Query: 184 DFFLSVGLGLGSTNTPQARFRKSISSERTFSVTED---KALLYRKLAEIAEMLSADMQKE 240
++ G KS+ +E TF +D + L R+L A ++ ++
Sbjct: 229 RGLRALACGEDPREVVPDEEAKSVGAEDTFD--QDLLGRPALERELLAQAGTVARRLRAA 286
Query: 241 GLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHA-SVLLKAELPVSLRLIGLRVT 299
GL G +TLK+K A F + TR VTL++ I A + L + +L +RL G+ V+
Sbjct: 287 GLAGHVVTLKVKYADFTLVTRRVTLERATDDDRAIFDAACAQLARVDLRRPVRLTGISVS 346
Query: 300 QFNEDKVRA 308
F D+ R
Sbjct: 347 GFAGDEERG 355
>gi|419802488|ref|ZP_14327674.1| DNA polymerase IV [Haemophilus parainfluenzae HK262]
gi|419845026|ref|ZP_14368313.1| DNA polymerase IV [Haemophilus parainfluenzae HK2019]
gi|385190048|gb|EIF37498.1| DNA polymerase IV [Haemophilus parainfluenzae HK262]
gi|386416952|gb|EIJ31444.1| DNA polymerase IV [Haemophilus parainfluenzae HK2019]
Length = 374
Score = 151 bits (382), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 113/303 (37%), Positives = 164/303 (54%), Gaps = 22/303 (7%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG+ +AMP A K CP LI VP + Y S ++F +Y SLDEAYL
Sbjct: 70 ARKFGLHSAMPTAQAIKKCPNLILVPVNMPLYKQVSAQIHQIFQRYTSIIEPLSLDEAYL 129
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-P 126
D+T+ C + S IA+E+R ++++E LT SAGVAP + LAK+ SD+NKPNGQFV+ P
Sbjct: 130 DVTD-CTQCSGSATWIAQEIRQAIFDELKLTASAGVAPLKFLAKIASDMNKPNGQFVIQP 188
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVT-EHILRDVFGINTCEEMLQK--GSLLCAVFSHSTA 183
++ V F+ +LP++KI G+GKVT E +L+ G+ TCE+ +QK S+L +F
Sbjct: 189 HE---VEQFVKTLPLKKIPGVGKVTSERLLK--MGLETCED-VQKLDQSILLNIFGKMGK 242
Query: 184 DFFLSVGLGLGSTNTPQARFRKSISSERTFS-----VTEDKALLYRKLAEIAEMLSADMQ 238
+ G+ R RKSI ERT S + + ALL AE+ +
Sbjct: 243 RIW-DFSHGIDDREIQAYRERKSIGVERTLSENIRHLEQGIALLDNLYAELIRRIERSAP 301
Query: 239 KEGLRG-RTLTLKLKTASFEVRTRAVT-LQKYISSSEDILKHASVLLKAELPVSLRLIGL 296
L R + +KLK F+V T T L + S + +L+ + + S+RL+GL
Sbjct: 302 NVPLTVFRKIGVKLKFEDFQVTTLEKTGLPLSLKSFQQLLEQ---IWQRSQGKSIRLVGL 358
Query: 297 RVT 299
VT
Sbjct: 359 HVT 361
>gi|89256328|ref|YP_513690.1| DNA polymerase IV [Francisella tularensis subsp. holarctica LVS]
gi|156502401|ref|YP_001428466.1| DNA polymerase IV [Francisella tularensis subsp. holarctica
FTNF002-00]
gi|254367662|ref|ZP_04983683.1| DNA polymerase IV, DNA damage inducible protein P [Francisella
tularensis subsp. holarctica 257]
gi|290952880|ref|ZP_06557501.1| DNA polymerase IV [Francisella tularensis subsp. holarctica URFT1]
gi|422938730|ref|YP_007011877.1| DNA polymerase IV [Francisella tularensis subsp. holarctica FSC200]
gi|423050677|ref|YP_007009111.1| DNA polymerase IV [Francisella tularensis subsp. holarctica F92]
gi|122500763|sp|Q2A3L2.1|DPO4_FRATH RecName: Full=DNA polymerase IV; Short=Pol IV
gi|226738232|sp|A7NC07.1|DPO4_FRATF RecName: Full=DNA polymerase IV; Short=Pol IV
gi|89144159|emb|CAJ79420.1| DNA polymerase IV, devoid of proofreading,damage inducible protein
P [Francisella tularensis subsp. holarctica LVS]
gi|134253473|gb|EBA52567.1| DNA polymerase IV, DNA damage inducible protein P [Francisella
tularensis subsp. holarctica 257]
gi|156253004|gb|ABU61510.1| ImpB/MucB/SamB family protein [Francisella tularensis subsp.
holarctica FTNF002-00]
gi|407293881|gb|AFT92787.1| DNA polymerase IV [Francisella tularensis subsp. holarctica FSC200]
gi|421951399|gb|AFX70648.1| DNA polymerase IV [Francisella tularensis subsp. holarctica F92]
Length = 349
Score = 151 bits (382), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 106/297 (35%), Positives = 166/297 (55%), Gaps = 17/297 (5%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR +GVR+AMP IA + CP LI + TDF KY S + R +F + SLDEAYL
Sbjct: 51 AREYGVRSAMPTAIAMQKCPNLILLNTDFAKYKAASAVIRDIFYSFTDKVEPLSLDEAYL 110
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T+V +E S IA+ ++ ++ + GLT SAGVAPN+LLAK+ SDINKPNG +V+
Sbjct: 111 DVTDV-KEYKNSATLIAQAIKQEIFNKTGLTGSAGVAPNKLLAKIASDINKPNGLYVVTP 169
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAV--FSHSTADF 185
+ V +F+ LP++K+ G+GKV++ L+ + G+ TC + LQ+ SL V F +
Sbjct: 170 KQ--VDSFVKDLPVKKLFGVGKVSQEKLKSM-GVETCLD-LQQLSLATLVDKFGKFGSSL 225
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALL---YRKLAEIAEMLSADMQKEGL 242
+ + G+ + R RKS+S E T+ ED L KL + + L++ M +E
Sbjct: 226 Y-NYARGIDNREVNPVRIRKSVSVENTY--LEDLKTLGACLEKLPSLYDKLTSRMTEEHY 282
Query: 243 RGRT-LTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRV 298
+ + +K F +T + K + +++LK+ + L + +RLIG+ V
Sbjct: 283 KSIIGIVVKFTDTKFN-KTSLTRVAKIL--DKEMLKNLIIELHQKRNHPIRLIGIGV 336
>gi|410944344|ref|ZP_11376085.1| DNA polymerase IV [Gluconobacter frateurii NBRC 101659]
Length = 379
Score = 151 bits (382), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 103/267 (38%), Positives = 145/267 (54%), Gaps = 9/267 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FGVR+AMP A++LCP+L+FVP F Y S +F +Y P SLDEAYL
Sbjct: 49 ARPFGVRSAMPSLKAKRLCPDLVFVPGRFDVYRAVSAQIHDIFARYTPLIQPLSLDEAYL 108
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T+ G S +AE +R + +E GLT SAGV+ NR LAK+ SD KP+G FV+
Sbjct: 109 DLTDYLGAYG-SATLVAERIRADIRKETGLTASAGVSYNRFLAKLASDYRKPDGLFVI-T 166
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH--STADF 185
M F++ L + + GIG T +R GI T ++ + L + H +A F
Sbjct: 167 PGMGP-DFVTGLTVDQFHGIGPATAQKMR-ALGIETGADLRKVD--LPTLMRHFGKSAPF 222
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTF-SVTEDKALLYRKLAEIAEMLSADMQKEGLRG 244
+ + G+ R RKS+ +E+T+ S + K L IA L +Q++ L G
Sbjct: 223 YHGISRGIDERPVVVNRERKSLGTEQTYLSDLQKKDEAEAALDLIATKLWLQVQRKQLTG 282
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISS 271
RT+TLK+K A+F TRA TL I+S
Sbjct: 283 RTVTLKVKYANFRQITRARTLPAPITS 309
>gi|374373625|ref|ZP_09631285.1| DNA polymerase IV [Niabella soli DSM 19437]
gi|373234598|gb|EHP54391.1| DNA polymerase IV [Niabella soli DSM 19437]
Length = 348
Score = 151 bits (382), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 102/300 (34%), Positives = 171/300 (57%), Gaps = 13/300 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGV +AMP A++LCP+ +FV F Y S+ ++F ++ SLDEAYL
Sbjct: 41 ARKFGVHSAMPSKTAQRLCPQALFVYPRFDAYKTVSEKIHEIFHRFTDIIEPLSLDEAYL 100
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLP 126
D+T+ + G S ++IA +++ ++ EE LT SAGV+ N+ +AK+ SD+NKP+G F+ P
Sbjct: 101 DVTKDKQNIG-SALDIARQIKQAIKEELQLTASAGVSINKFVAKIASDMNKPDGLTFIGP 159
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADF 185
+ + F+ LP+ K G+GKVT ++ G++T ++ + S + F +
Sbjct: 160 S---RIEAFMEQLPVGKFHGVGKVTAAKMK-TMGLHTGADLKKLSESEITKQFGKPGKFY 215
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTF-SVTEDKALLYRKLAEIAEMLSADMQKEGLRG 244
+L V G+ + R KS+S E T+ S K ++ +L +A L+ +Q+ GL+G
Sbjct: 216 YLIV-RGIDNREVQPHRETKSVSVEDTYQSDLTTKETMWTELETLAIRLADRLQRHGLKG 274
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV---SLRLIGLRVTQF 301
RT+T+K K F + TR+++L + ++ E L A+ L + PV +RL+GL V+ F
Sbjct: 275 RTVTVKFKFHDFTIITRSLSLPELVNDQES-LSAATRTLLDKAPVDEKKVRLLGLGVSNF 333
>gi|254491040|ref|ZP_05104221.1| ImpB/MucB/SamB family [Methylophaga thiooxidans DMS010]
gi|224463553|gb|EEF79821.1| ImpB/MucB/SamB family [Methylophaga thiooxydans DMS010]
Length = 362
Score = 151 bits (382), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 104/302 (34%), Positives = 162/302 (53%), Gaps = 16/302 (5%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG+ +AMP A +LCP+ IFV F Y S R +F +Y SLDEAYL
Sbjct: 51 ARKFGIHSAMPCSRAYRLCPQAIFVKPRFDAYREVSQQIRDIFWRYASEVEPLSLDEAYL 110
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFV-LP 126
D+T G S IA+ ++ + +E L SAGV+ N+ LAK+ SD++KPNG +V LP
Sbjct: 111 DVTYTEDFNG-SATLIAKAIKQDILQETNLYASAGVSYNKFLAKIASDMDKPNGLYVILP 169
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFF 186
A F+S L I K GIG TE ++ + GI T ++ QK + ++
Sbjct: 170 QQGEA---FVSELAIGKFHGIGPATEAKMKQL-GIATGYDLRQKSEAELTERFGKSGQYY 225
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTF-----SVTEDKALLYRKLAEIAEMLSADMQKEG 241
++ + R RKS+ E TF SV E L KL+++A+++ + K+
Sbjct: 226 FNIARAIDERPVRSTRIRKSLGKETTFSHDILSVPE----LTAKLSDLADIVLESLAKQN 281
Query: 242 LRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL-PVSLRLIGLRVTQ 300
L+ RT+T+K+K + F+ TRA TL+ I+S++ +L + E ++RL+GL ++
Sbjct: 282 LKARTVTVKVKYSDFQQVTRAQTLEHSIASADLNEWIPKLLARTEAGQKAVRLVGLSLSG 341
Query: 301 FN 302
F+
Sbjct: 342 FD 343
>gi|340782658|ref|YP_004749265.1| DNA polymerase IV [Acidithiobacillus caldus SM-1]
gi|340556810|gb|AEK58564.1| DNA polymerase IV [Acidithiobacillus caldus SM-1]
Length = 373
Score = 151 bits (381), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 100/292 (34%), Positives = 150/292 (51%), Gaps = 7/292 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFG+R+AM AR LCP+ IFV Y S + Y SLDEA+L
Sbjct: 58 ARRFGIRSAMSAARARSLCPQAIFVRPRMDAYREVSRQVMTILRSYTALVEPLSLDEAFL 117
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T + G +EIA E+ ++ E GLT SAGV+ N+LLAK+ SD KP+G FV+P
Sbjct: 118 DVTAATTD-GTLAVEIAREILDRIHRETGLTASAGVSYNKLLAKLASDWRKPHGLFVIPP 176
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
+R + F++ LP+ K+ G+G T L G+ T ++ + +F
Sbjct: 177 ERG--LAFLAPLPVGKLHGVGPATVKKL-SAMGVETVLDLRNLSLEFLVTHFGKSGGWFY 233
Query: 188 SVGLGLGSTNTPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLRGRT 246
V + +R RKS+ +ERTFS D++++ L E+A ++A +Q L G T
Sbjct: 234 DVARAIDERPVQPSRQRKSVGTERTFSKNLADRSVMLTTLQEMAAQVAARLQVLHLAGHT 293
Query: 247 LTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELP--VSLRLIGL 296
+ +K + F TRA T + I S++ I LL +P S+RL+G+
Sbjct: 294 VHIKARFPDFTTVTRAYTATEGIGSADAIAAWLPELLDRAVPKSTSVRLLGM 345
>gi|329850033|ref|ZP_08264879.1| impB/mucB/samB family protein [Asticcacaulis biprosthecum C19]
gi|328841944|gb|EGF91514.1| impB/mucB/samB family protein [Asticcacaulis biprosthecum C19]
Length = 365
Score = 151 bits (381), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 104/315 (33%), Positives = 169/315 (53%), Gaps = 11/315 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++GV +AMP A++ CP+LIFV F Y S R +F Y P SLDEAYL
Sbjct: 55 ARKYGVYSAMPSVTAKRKCPDLIFVKHRFEVYREVSHQIRDIFFDYTPLVEPLSLDEAYL 114
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+TE + S +IAE++R + + LT SAGV+ N+ LAK+ SD NKP+G FV+
Sbjct: 115 DVTENLKGM-TSATQIAEDIRARIRDVTQLTASAGVSYNKFLAKIASDQNKPDGLFVIKP 173
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
+ F++SLP++K G+G T + + G+ T ++ + + ++
Sbjct: 174 SQGP--DFVASLPVKKFYGVGPATASKM-NRLGLYTGMDIRNQTLAFLQKHFGISGSYYY 230
Query: 188 SVGLGLGSTNTPQARFRKSISSERTFSVTEDKALL---YRKLAEIAEMLSADMQKEGLRG 244
+V G+ R RKS+ E TF ED + L + +L I + + ++ +G++G
Sbjct: 231 NVSRGICHRQVKPDRERKSVGGENTF--FEDVSTLDSAWAQLLPILDKVWRHIEGKGIKG 288
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFN 302
RT+TLK+K A F TR+ T ++ + + + LL+ PV ++RL+G+ ++ +
Sbjct: 289 RTVTLKVKYADFTTITRSKTFAAAVADRDTMTRIGRELLEGVFPVVKNIRLLGISLSSLS 348
Query: 303 EDKVRAPSDPTQKTL 317
ED+ P D Q +L
Sbjct: 349 EDEADEPEDMRQLSL 363
>gi|325578163|ref|ZP_08148298.1| DNA-directed DNA polymerase IV [Haemophilus parainfluenzae ATCC
33392]
gi|325159899|gb|EGC72028.1| DNA-directed DNA polymerase IV [Haemophilus parainfluenzae ATCC
33392]
Length = 344
Score = 151 bits (381), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 113/303 (37%), Positives = 164/303 (54%), Gaps = 22/303 (7%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG+ +AMP A K CP LI VP + Y S ++F +Y SLDEAYL
Sbjct: 40 ARKFGLHSAMPTAQAIKKCPNLILVPVNMPLYKQVSAQIHQIFQRYTSIIEPLSLDEAYL 99
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-P 126
D+T+ C + S IA+E+R ++++E LT SAGVAP + LAK+ SD+NKPNGQFV+ P
Sbjct: 100 DVTD-CTQCSGSATWIAQEIRQAIFDELKLTASAGVAPLKFLAKIASDMNKPNGQFVIQP 158
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVT-EHILRDVFGINTCEEMLQK--GSLLCAVFSHSTA 183
++ V F+ +LP++KI G+GKVT E +L+ G+ TCE++ QK S+L +F
Sbjct: 159 HE---VEQFVKTLPLKKIPGVGKVTSERLLK--MGLETCEDV-QKLDQSILLNIFGKMGK 212
Query: 184 DFFLSVGLGLGSTNTPQARFRKSISSERTFS-----VTEDKALLYRKLAEIAEMLSADMQ 238
+ G+ R RKSI ERT S + + ALL AE+ +
Sbjct: 213 RIW-DFSHGIDDREIQAYRERKSIGVERTLSKNIRHLEQGIALLDNLYAELIRRIERSAP 271
Query: 239 KEGLRG-RTLTLKLKTASFEVRTRAVT-LQKYISSSEDILKHASVLLKAELPVSLRLIGL 296
L R + +KLK F+V T T L + S + +L+ + + S+RL+GL
Sbjct: 272 NVPLTVFRKIGVKLKFEDFQVTTLEKTGLPLSLKSFQQLLEQ---IWQRSQGKSIRLVGL 328
Query: 297 RVT 299
VT
Sbjct: 329 HVT 331
>gi|436840478|ref|YP_007324856.1| DNA polymerase IV [Desulfovibrio hydrothermalis AM13 = DSM 14728]
gi|432169384|emb|CCO22752.1| DNA polymerase IV [Desulfovibrio hydrothermalis AM13 = DSM 14728]
Length = 389
Score = 151 bits (381), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 106/297 (35%), Positives = 155/297 (52%), Gaps = 8/297 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR+AMP A KLCP+L V +Y SD KV Y P AS+DEAYL
Sbjct: 48 ARKFGVRSAMPVHQALKLCPQLQVVSGTRGRYKEISDQVMKVLGNYSPVVEQASIDEAYL 107
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-P 126
DIT + G ++A+ ++ +Y+ GLT S G+AP + LAK+ SD+NKPNG ++ P
Sbjct: 108 DITGTQKLFGPPR-KLAQSIKDDIYKTTGLTASVGIAPVKFLAKIASDLNKPNGISIIEP 166
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFF 186
++ V F+ +LP+ KI G+GK L F + ++ +
Sbjct: 167 HE---VEEFLKTLPVEKIPGVGKKALPRLH-AFSVKFAADLRKYSPEFWKERFGERGLVL 222
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTF-SVTEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
G G+ T KS S+E TF D +L L + +E ++AD++++GL+GR
Sbjct: 223 YEKGAGIDPTPVTLGGQMKSSSAENTFDDDVSDPHVLKTLLLKQSERIAADIRRKGLKGR 282
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS-LRLIGLRVTQF 301
T+TLK+K F TR+ TL S S I K LL E + +RLIG+ ++ F
Sbjct: 283 TITLKIKFPDFRQITRSKTLDFRTSHSGTIYKTGCKLLDNEGRIGPVRLIGIGISNF 339
>gi|289665427|ref|ZP_06487008.1| DNA polymerase IV [Xanthomonas campestris pv. vasculorum NCPPB 702]
gi|289668390|ref|ZP_06489465.1| DNA polymerase IV [Xanthomonas campestris pv. musacearum NCPPB
4381]
Length = 359
Score = 151 bits (381), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 110/303 (36%), Positives = 166/303 (54%), Gaps = 15/303 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FG+R+AMP A +LCP+ IFVP DF +Y S R++F ++ SLDEAYL
Sbjct: 47 ARTFGIRSAMPAVRAERLCPDAIFVPPDFARYKAVSRQVREIFHRHTDLVEPLSLDEAYL 106
Query: 68 DITEVCRERGIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP 126
D+T + G+ EIA+ +RT + EE LT SAG+APN+ LAK+ SD KP+GQFV+
Sbjct: 107 DVTHA--KTGMQLATEIAQLIRTQIREETQLTASAGIAPNKFLAKIASDWRKPDGQFVIA 164
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM-LQKGSLLCAVFSHSTADF 185
R + F+ L + +I G+GKV + L GI T ++ L+ L A F S
Sbjct: 165 PSR--IDAFLLPLKVNRIPGVGKVMDGKL-AALGIVTVADLRLRPLEELQAHFG-SFGQS 220
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLR 243
G+ + +S+SSE TFS ED L L + +A ++
Sbjct: 221 LYRRARGIDERPVEPDQEVQSVSSEDTFS--EDLPLDALDPHILRLAGKTWLATRRTERI 278
Query: 244 GRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHA-SVLLKAELPVS--LRLIGLRVTQ 300
GRT+ LKLKT++F + TR+ T ++ +S E + + A S+ + E+P RL+G+ ++
Sbjct: 279 GRTVVLKLKTSNFRILTRSYTPEQPPASQEALAQIALSLTRRVEMPAQTRYRLVGVGLSG 338
Query: 301 FNE 303
F++
Sbjct: 339 FSD 341
>gi|359727025|ref|ZP_09265721.1| DNA polymerase IV [Leptospira weilii str. 2006001855]
Length = 352
Score = 151 bits (381), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 100/307 (32%), Positives = 167/307 (54%), Gaps = 18/307 (5%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR+AMP A +L P+ IFVP F Y S+ R++F +Y SLDE YL
Sbjct: 40 ARKFGVRSAMPCSKAAQLAPQAIFVPPRFKVYKEVSNRIREIFLEYTDRVEMLSLDEGYL 99
Query: 68 DITEVCRERGIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVL 125
D+T ++ I + IA+E+R+ +++ LT SAGV ++ +AK+ S+ NKPNG VL
Sbjct: 100 DVT--FNKKNIPFAVTIAKEIRSEIFKRTELTASAGVGNSKFIAKLASEKNKPNGLTVVL 157
Query: 126 PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADF 185
P+D V+ FI LP+ G+GKVT ++++ I T +++ K + +
Sbjct: 158 PDD---VIAFIDPLPVSSFHGVGKVTAQKMKEL-EIYTGKDLRAKNIDELVQYFGKMGIY 213
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSVTE-DKALLYRKLAEIAEMLSADMQKEGLRG 244
+ + G R RKS+ +E TF + D+ L ++L E+A + +++ G
Sbjct: 214 YYKISRGEDEREVESCRERKSLGAENTFDQDKIDREDLLQQLREVAVEVERRLKERDFAG 273
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV---------SLRLIG 295
+TLTLK+K F +RTR+ TL + I S++++ A+ L + + ++RL+G
Sbjct: 274 KTLTLKIKFQDFRLRTRSKTLSEPIFSADELYSVAAELFEEFFEIKNGKQVSIKAIRLLG 333
Query: 296 LRVTQFN 302
+ ++ N
Sbjct: 334 INLSHPN 340
>gi|409440154|ref|ZP_11267166.1| DNA polymerase IV [Rhizobium mesoamericanum STM3625]
gi|408747756|emb|CCM78348.1| DNA polymerase IV [Rhizobium mesoamericanum STM3625]
Length = 362
Score = 151 bits (381), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 97/298 (32%), Positives = 156/298 (52%), Gaps = 9/298 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGV +AMP A++ CP LIFVP F Y S R++F +Y SLDEAYL
Sbjct: 55 ARKFGVHSAMPSATAKRKCPALIFVPPRFDVYRAVSQQIREIFAEYTTVIEPLSLDEAYL 114
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-P 126
D+++ + I+ EIA E+R + + GL SAG++ N+ LAK+ SD+NKPNGQ V+ P
Sbjct: 115 DVSQNLKGMKIA-TEIASEIRAKIKQVTGLNASAGISYNKFLAKMASDLNKPNGQAVITP 173
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFF 186
+ F+ +LP++K G+G T + + GI+T ++ +K + +F
Sbjct: 174 KNGPG---FVEALPVQKFHGVGPATAEKMHRL-GIDTGADLKEKTLEFLVEHFGKSGPYF 229
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRK-LAEIAEMLSADMQKEGLRGR 245
+ G+ R RKS+ +E TFS R+ L + E + + G+ +
Sbjct: 230 YGIARGIDERQVKPDRVRKSVGAEDTFSHDVHAYEPAREGLQPLIEKVWGYCEANGIGAK 289
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQF 301
T+TLK+K A F TR+ T+ + + D+ + +LL P +RL+G+ ++
Sbjct: 290 TVTLKVKYADFNQITRSKTVPAPLPAIADLEEIVDLLLSPIFPPRKGIRLLGVTLSSL 347
>gi|150019053|ref|YP_001311307.1| DNA polymerase IV [Clostridium beijerinckii NCIMB 8052]
gi|149905518|gb|ABR36351.1| DNA-directed DNA polymerase [Clostridium beijerinckii NCIMB 8052]
Length = 348
Score = 151 bits (381), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 103/305 (33%), Positives = 161/305 (52%), Gaps = 8/305 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++GV +AMP F+AR+ CP IFV + KY S ++F + P S+DE +L
Sbjct: 48 ARKYGVHSAMPMFMAREKCPNGIFVSGRYGKYAKVSQEIFEIFNEVTPLVEPVSIDEGFL 107
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+++ + GIE A ++ V++E GLT S G++ N+ LAK+ S+ NKPNG +
Sbjct: 108 DLSQ---GKIKDGIEAARYIKNRVFKEVGLTLSIGISYNKFLAKLASEWNKPNGIKEIRK 164
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
+ + + F LPI K+ G+GKV+ L ++ GI EE+ + +
Sbjct: 165 EMIPDILF--PLPISKVHGLGKVSVAKLNNM-GIYYIEELYKMPKEFYIEYLGKNGIEIY 221
Query: 188 SVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRT 246
G+ R RKSI ERT T++K L + E + + + ++ + G+T
Sbjct: 222 DRIRGIDGRKVELIRERKSIGKERTLKFDTKNKEELREYIKEFSFEIEEILNRKNVSGKT 281
Query: 247 LTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFNEDK 305
+TLK KT FE TR+ TL YI + +I K A LL +E L +RLIG+ ++ F E +
Sbjct: 282 VTLKFKTKDFENHTRSKTLNYYIGTQLEIYKVAEELLDSEQLKEEVRLIGVSISSFKETE 341
Query: 306 VRAPS 310
V+ S
Sbjct: 342 VQQMS 346
>gi|257455879|ref|ZP_05621098.1| DNA polymerase IV [Enhydrobacter aerosaccus SK60]
gi|257446727|gb|EEV21751.1| DNA polymerase IV [Enhydrobacter aerosaccus SK60]
Length = 351
Score = 151 bits (381), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 105/299 (35%), Positives = 162/299 (54%), Gaps = 24/299 (8%)
Query: 9 RRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLD 68
R+FGV +AM + AR+LCP+ IFV F Y S+ R + +Y SLDEAYLD
Sbjct: 49 RKFGVHSAMSCYRARQLCPQAIFVKPRFEVYREVSEQIRAIMHQYTLLVEPLSLDEAYLD 108
Query: 69 ITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPND 128
+T+ E+ S IA +R + + LT SAGV+ N++LAK+ SD+NKPNG V+ +
Sbjct: 109 VTDSPYEKN-SATLIANRIRQQILRQTQLTASAGVSYNKMLAKIASDLNKPNGIAVITPE 167
Query: 129 RMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLS 188
+ + FI++LP++K GIGK T +L D+ GI T ++ + + DFF
Sbjct: 168 QG--LDFIANLPVKKFHGIGKATVKMLHDM-GIFTGLDLRNTPADVLKQHFGKRGDFFHQ 224
Query: 189 VGLGLGSTNTPQARFRKSISSERTF--SVTEDK---ALLYRKLAEIAEMLSADMQKEGLR 243
+ G+ + R KS+ SE TF + +DK A LYR+ ++ + D+QK+ +
Sbjct: 225 IAHGIDNREVKAERNHKSVGSETTFVHNTMDDKVIVAALYRENSQAFK----DLQKKQRK 280
Query: 244 GRTLTLKLKTASFEVRTRAVTLQKYISSSED------ILKHASVLLKAELPVSLRLIGL 296
RT+T+K+K + F V TR+ ++ + D L H + L LPV RL+G+
Sbjct: 281 ARTITIKIKYSDFSVITRSHSISSHFEQESDAHYWIQWLYHHTPKL---LPV--RLVGV 334
>gi|223934355|ref|ZP_03626276.1| DNA-directed DNA polymerase [bacterium Ellin514]
gi|223896818|gb|EEF63258.1| DNA-directed DNA polymerase [bacterium Ellin514]
Length = 368
Score = 151 bits (381), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 101/290 (34%), Positives = 161/290 (55%), Gaps = 12/290 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR+AMP +A++LCP+ F+ Y S+ ++ S+DEAYL
Sbjct: 49 ARKFGVRSAMPSVVAKRLCPDGFFIRPRMDHYRAESNQIMQIVAASGAIIEQVSIDEAYL 108
Query: 68 DITEVCRERGI-----SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQ 122
D++ VC+ + S + +A +L+ ++ E GLT S G+A N+LLAK+ SD NKPNG
Sbjct: 109 DLSPVCQRSDLDSSLLSAVPLAAQLKDKIFSERGLTTSIGIASNKLLAKIASDFNKPNGL 168
Query: 123 FVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHS 181
++P +R V+ F+ +PIR I G+G+VTE +L+ G+ T ++ G L V S
Sbjct: 169 TLIP-ERDKVL-FLRPMPIRAIPGVGRVTEEMLKKS-GVETIGDLQDFPGDLRSMVGSFG 225
Query: 182 TADFFLSVGLGLGSTNTPQARFRKSISSERTF-SVTEDKALLYRKLAEIAEMLSADMQKE 240
S G +T KSISSE TF TED+ +L L E AE ++A ++++
Sbjct: 226 PTLKRFSFGEDNRQLDT--GDVIKSISSENTFLKDTEDRKILKTCLREQAEEIAAKLKRK 283
Query: 241 GLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS 290
+ +T+ +KL+ + F TR +++++ I+ + DI + LL E VS
Sbjct: 284 QIGAQTIQVKLRYSDFTTLTRQLSVEEPITEAADIYRLGCYLLAREKLVS 333
>gi|167627838|ref|YP_001678338.1| DNA polymerase IV [Francisella philomiragia subsp. philomiragia
ATCC 25017]
gi|226738231|sp|B0TZS5.1|DPO4_FRAP2 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|167597839|gb|ABZ87837.1| DNA-directed DNA polymerase [Francisella philomiragia subsp.
philomiragia ATCC 25017]
Length = 350
Score = 151 bits (381), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 104/297 (35%), Positives = 165/297 (55%), Gaps = 17/297 (5%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR +GVR+AMP IA + CP LI + TDF KY S + R +F + SLDEAYL
Sbjct: 51 AREYGVRSAMPTAIAMQKCPNLILLNTDFAKYKATSAVIRDIFYSFTDKVEPLSLDEAYL 110
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T+V +E S IA+ ++ ++ + GLT SAGVAPN+LLAK+ SDINKPNG +V+
Sbjct: 111 DVTDV-KEYKNSATLIAQAIKQEIFNKTGLTGSAGVAPNKLLAKIASDINKPNGLYVITP 169
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAV--FSHSTADF 185
++ V +F+ LP++K+ G+GKV++ L+++ + TC + LQ+ SL V F +
Sbjct: 170 EQ--VDSFVKDLPVKKLFGVGKVSQEKLKNM-NVETCLD-LQQLSLATLVDKFGKFGSSL 225
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALL---YRKLAEIAEMLSADMQKEGL 242
+ + G+ + R RKS+S E T+ ED L KL + L++ M +E
Sbjct: 226 Y-NYARGIDNREVNPVRIRKSVSVENTY--LEDLKTLEACLEKLPNLYNKLTSRMTEEHY 282
Query: 243 RGRT-LTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRV 298
+ + +K F +T + K + + +LK+ + L + +RLIG+ +
Sbjct: 283 KSIIGIVVKFTDTKFN-KTSLTRVAKTL--DKKVLKNLIIELHQKQNYHIRLIGIGI 336
>gi|71756021|ref|XP_828925.1| DNA polymerase kappa [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|70834311|gb|EAN79813.1| DNA polymerase kappa, putative [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
Length = 572
Score = 151 bits (381), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 98/314 (31%), Positives = 162/314 (51%), Gaps = 24/314 (7%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR G+R MPGF+A K+CP L+ +P D Y S+ R++ +YDPN++ LDE L
Sbjct: 175 ARGRGIRQGMPGFLALKICPNLLILPPDDDSYNEESNTVRRIVAEYDPNYIVVGLDELAL 234
Query: 68 DITE-VCRERGISGIE-IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL 125
+++ + R G E +A ELR V+ E LT SAG+ P LAK+ S+INKPNGQ L
Sbjct: 235 EVSAYIERFEGTKTAEDVASELRVRVFGETKLTASAGIGPTAALAKIASNINKPNGQHDL 294
Query: 126 P-NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTAD 184
+ R VMT++ L +R + G+GKVTE +L+ GI T ++ + LC + ++
Sbjct: 295 NLHTREDVMTYVRDLGLRSVPGVGKVTEALLKG-LGITTLSDIYNRRVELCYILHNNLFR 353
Query: 185 FFLSVGLGL-------GSTNT-----PQARFRKSISSERTFSVTEDKALLYRKLAEIAEM 232
F L +G+ + NT RK+ISSER+ + K + + +
Sbjct: 354 FLLGASIGIMQWPDAATAANTENCEGATGEQRKAISSERSITTPRTKEGMQEMVDTVFNG 413
Query: 233 LSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLR 292
+M+K + R ++L ++ AS+ + +L ++ S + + L+ LP + +
Sbjct: 414 AYEEMRKSEIMCRRISLTIRWASYRYQQYTKSLIQHSDDSATLRRAVDELM---LPHAAK 470
Query: 293 -----LIGLRVTQF 301
L+G+R++
Sbjct: 471 YSEMCLLGVRLSDL 484
>gi|115314775|ref|YP_763498.1| DNA polymerase IV [Francisella tularensis subsp. holarctica OSU18]
gi|122325207|sp|Q0BM23.1|DPO4_FRATO RecName: Full=DNA polymerase IV; Short=Pol IV
gi|115129674|gb|ABI82861.1| DNA-directed DNA polymerase [Francisella tularensis subsp.
holarctica OSU18]
Length = 349
Score = 151 bits (381), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 106/297 (35%), Positives = 166/297 (55%), Gaps = 17/297 (5%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR +GVR+AMP IA + CP LI + TDF KY S + R +F + SLDEAYL
Sbjct: 51 AREYGVRSAMPTAIAMQKCPNLILLNTDFAKYKAASAVIRDIFYYFTDKVEPLSLDEAYL 110
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T+V +E S IA+ ++ ++ + GLT SAGVAPN+LLAK+ SDINKPNG +V+
Sbjct: 111 DVTDV-KEYKNSATLIAQAIKQEIFNKTGLTGSAGVAPNKLLAKIASDINKPNGLYVVTP 169
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAV--FSHSTADF 185
+ V +F+ LP++K+ G+GKV++ L+ + G+ TC + LQ+ SL V F +
Sbjct: 170 KQ--VDSFVKDLPVKKLFGVGKVSQEKLKSM-GVETCLD-LQQLSLATLVDKFGKFGSSL 225
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALL---YRKLAEIAEMLSADMQKEGL 242
+ + G+ + R RKS+S E T+ ED L KL + + L++ M +E
Sbjct: 226 Y-NYARGIDNREVNPVRIRKSVSVENTY--LEDLKTLGACLEKLPSLYDKLTSRMTEEHY 282
Query: 243 RGRT-LTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRV 298
+ + +K F +T + K + +++LK+ + L + +RLIG+ V
Sbjct: 283 KSIIGIVVKFTDTKFN-KTSLTRVAKIL--DKEMLKNLIIELHQKRNHPIRLIGIGV 336
>gi|441495813|ref|ZP_20978052.1| DNA polymerase IV [Fulvivirga imtechensis AK7]
gi|441440562|gb|ELR73820.1| DNA polymerase IV [Fulvivirga imtechensis AK7]
Length = 347
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 97/272 (35%), Positives = 150/272 (55%), Gaps = 11/272 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR+AMP IA + CP+LIFV F Y S+ R +F +Y SLDEAYL
Sbjct: 39 ARKFGVRSAMPSSIAARKCPDLIFVRPRFDAYKAVSNQIRDIFFEYTDLVEPLSLDEAYL 98
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-P 126
D+T ++ S IA E++ + E GLT SAG++ N+ LAK SD+NKP+G F++ P
Sbjct: 99 DVTH-NKKNMPSATLIAREIKKRIKETTGLTASAGISINKFLAKTASDVNKPDGLFLIAP 157
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVT-EHILRDVFGINTCEEMLQKGSLLCAVFSHSTADF 185
D A ++ L I K GIGKVT E + + GI +++ + V +
Sbjct: 158 EDAEA---YVERLAIEKFFGIGKVTAEKMFK--MGIRNGQDLKRYAEADLVVRFGKAGRY 212
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLR 243
+ + + R RKS+ +E TF +TE + + ++L +I + L+ M++ +
Sbjct: 213 YYRIARAIDDREVNPNRIRKSLGAENTFEKDLTELEE-IRKELVDITKTLTMRMERSNTK 271
Query: 244 GRTLTLKLKTASFEVRTRAVTLQKYISSSEDI 275
G+TLTLK+K F+ TR+ T+ K+I + + I
Sbjct: 272 GKTLTLKVKFHDFQQITRSKTITKWIENEKQI 303
>gi|313205495|ref|YP_004044152.1| DNA-directed DNA polymerase [Paludibacter propionicigenes WB4]
gi|312444811|gb|ADQ81167.1| DNA-directed DNA polymerase [Paludibacter propionicigenes WB4]
Length = 361
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 103/304 (33%), Positives = 160/304 (52%), Gaps = 13/304 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARR+GV +AM A + CP LIFV F Y S ++F +Y SLDEA+L
Sbjct: 47 ARRYGVHSAMASKTALRKCPHLIFVMPRFDVYKSVSRQIMEIFHEYTDLVEPLSLDEAFL 106
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+TE ++ + +IA+E++ + E GLT SAGV+ N+ LAK+ SD NKP+G FV+
Sbjct: 107 DVTENHKQIA-TATQIAKEIKQKIRETVGLTASAGVSFNKFLAKIASDYNKPDGLFVITP 165
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
A F+ +LPI + G+GKVT + + GI T ++ Q +
Sbjct: 166 K--AAEQFVDTLPIERFFGVGKVTAERMHQL-GIKTGADLKQWSEQGLVTNFGKVGHMYY 222
Query: 188 SVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSAD----MQKEGLR 243
+ + R RKS+SSE TF++ D +Y ++ ++L+ + +QK+ +
Sbjct: 223 QNARAIDNRPVESQRIRKSVSSETTFAIDTD---IYEEILPELDVLTREVVDYIQKKDFK 279
Query: 244 GRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK-AELPVSLRLIGLRVTQFN 302
GRT ++KLK + F V TR+ T +S E + +LK +L +RLIG+ V N
Sbjct: 280 GRTASIKLKFSDFRVITRSKTFPTPVSDYETLYGAGKEMLKLVDLSPKIRLIGIGVKN-N 338
Query: 303 EDKV 306
E++V
Sbjct: 339 EEEV 342
>gi|395490223|ref|ZP_10421802.1| DNA-directed DNA polymerase [Sphingomonas sp. PAMC 26617]
Length = 364
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 101/299 (33%), Positives = 162/299 (54%), Gaps = 9/299 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FGVR+A+P A + CP+L+FVP F Y S + +F Y P SLDEAYL
Sbjct: 56 ARVFGVRSALPSVTALRRCPDLVFVPPRFDVYKAVSRQIQAIFRDYTPLVQPLSLDEAYL 115
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T ++ + A+ +R + EE GLT SAG++ N+ LAK+ SD KPNGQF +
Sbjct: 116 DVTANLQDLP-TAWATAKAIRARILEETGLTASAGISYNKFLAKLASDQRKPNGQFAVTP 174
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFF 186
D A ++ +LP+ + G+G VT + + GI T ++ K L A F ++ AD++
Sbjct: 175 DMGAA--WVETLPVSRFHGVGPVTAKKMHRL-GITTGADLRAKSIDFLRANFGNA-ADWY 230
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
++ G R RKS SE TF+ D + + ++A+ + A K GR
Sbjct: 231 HAIARGEDHRPVDPDRIRKSSGSETTFNRDLLDPVEIATGVQQMADDVWAWCAKAEAYGR 290
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS--LRLIGLRVTQFN 302
T+T+K+K F+ TR+ T I ++ + ++ L+++ LP + +RL+G+ V+ F+
Sbjct: 291 TVTVKVKYNDFQQITRSRTYPGPIDTAAKLSAASAELIRSVLPPTKGIRLVGVTVSTFD 349
>gi|404255732|ref|ZP_10959700.1| DNA-directed DNA polymerase [Sphingomonas sp. PAMC 26621]
Length = 348
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 101/307 (32%), Positives = 160/307 (52%), Gaps = 17/307 (5%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FGVR+A+P A + CP+L+F+P F Y S +F ++ SLDEAYL
Sbjct: 39 ARVFGVRSALPSVTAARRCPDLVFMPPRFDVYKAVSRQIHAIFAEFSDLIQPLSLDEAYL 98
Query: 68 DITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP 126
D+T+ RG+ + A+E+R + EE GLT SAG++ N+ LAK+ SD KPNGQF +
Sbjct: 99 DVTD--NRRGLPTAWSTAKEIRARILEETGLTASAGISFNKFLAKLASDHRKPNGQFAVT 156
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFF 186
D A ++ +LP+ + G+G VT ++ + GI T ++ K ++AD++
Sbjct: 157 PDMGA--DWVQTLPVARFHGVGPVTAAKMQRL-GIETGSDLRAKPLAFLQEHFGNSADWY 213
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSAD-----MQKEG 241
+ G+ R RKS SE TF D+ L E + AD + G
Sbjct: 214 FRIARGIDDRPVNPNRQRKSSGSEITF----DRDLTAAAEIEAGVLGQADDVWQWCARAG 269
Query: 242 LRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVT 299
GRT+T+K+K A F++ TR+ T + + + + L+++ LP +RL+G+ V+
Sbjct: 270 AFGRTVTVKIKYADFQMITRSRTRPTAVKTQTGLRDTSLRLVRSVLPTEKGIRLVGVTVS 329
Query: 300 QFNEDKV 306
F+ V
Sbjct: 330 NFDRSVV 336
>gi|395764365|ref|ZP_10445034.1| DNA-damage-inducible protein p [Janthinobacterium lividum PAMC
25724]
Length = 372
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 105/319 (32%), Positives = 162/319 (50%), Gaps = 17/319 (5%)
Query: 7 SARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAY 66
+AR+FGV +AM A KL P+ I +P DF Y YS ++ + P +DE Y
Sbjct: 59 AARKFGVFSAMGIMKAAKLAPDSILLPADFEAYRAYSARFKQAVAELCPIIQNVGIDEIY 118
Query: 67 LDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL- 125
+D++E G +A L+ +V+E GL+CS G+APN+LLAK+CSD+ KP+G +L
Sbjct: 119 IDLSEY----GEQAPAMAARLKAAVFEATGLSCSVGLAPNKLLAKICSDLEKPDGLTILQ 174
Query: 126 PNDRMAVMTFISSLPIRKIGGIG-KVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTA 183
P D V T + LP +KI GIG K T + + GI + E+ + ++L F
Sbjct: 175 PED---VETRVWPLPAKKINGIGPKATAKL--EALGIVSIGELARADLTMLRTQFGDLYT 229
Query: 184 DFFLSVGLGLGSTNTPQARFRKSISSERTF----SVTEDKALLYRKLAEIAEMLSADMQK 239
+ LG+ +R KS+S E TF V D+A L KL + ++ D+ K
Sbjct: 230 GWLRQAALGIDDRPVQTSRETKSVSRETTFERDLQVVRDRATLSEKLESLCTRVAGDLDK 289
Query: 240 EGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHA-SVLLKAELPVSLRLIGLRV 298
+ L GRT+ +KL+ F TR +TL + + IL+ + L + +RL+G+R+
Sbjct: 290 QSLAGRTVGVKLRFEDFSTVTRDITLPSATADAAAILRASRDCLRRVPFEKKIRLLGVRI 349
Query: 299 TQFNEDKVRAPSDPTQKTL 317
+ + V P Q L
Sbjct: 350 STLCDPAVVTRLVPAQAEL 368
>gi|404254296|ref|ZP_10958264.1| DNA-directed DNA polymerase [Sphingomonas sp. PAMC 26621]
Length = 364
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 101/299 (33%), Positives = 162/299 (54%), Gaps = 9/299 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FGVR+A+P A + CP+L+FVP F Y S + +F Y P SLDEAYL
Sbjct: 56 ARVFGVRSALPSVTALRRCPDLVFVPPRFDVYKAVSRQIQAIFRDYTPLVQPLSLDEAYL 115
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T ++ + A+ +R + EE GLT SAG++ N+ LAK+ SD KPNGQF +
Sbjct: 116 DVTANLQDLP-TAWATAKAIRARILEETGLTASAGISYNKFLAKLASDQRKPNGQFAVTP 174
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFF 186
D A ++ +LP+ + G+G VT + + GI T ++ K L A F ++ AD++
Sbjct: 175 DMGAA--WVETLPVSRFHGVGPVTAKKMHRL-GITTGADLRAKSIDFLRANFGNA-ADWY 230
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
++ G R RKS SE TF+ D + + ++A+ + A K GR
Sbjct: 231 HAIARGEDHRPVDPDRIRKSSGSETTFNRDLLDPVEIATGVQQMADDVWAWCAKAEAYGR 290
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS--LRLIGLRVTQFN 302
T+T+K+K F+ TR+ T I ++ + ++ L+++ LP + +RL+G+ V+ F+
Sbjct: 291 TVTVKVKYNDFQQITRSRTYPGPIDTAAKLSAASAELIRSVLPPTKGIRLVGVTVSTFD 349
>gi|94989203|ref|YP_597304.1| DNA polymerase IV [Streptococcus pyogenes MGAS9429]
gi|94993090|ref|YP_601189.1| DNA polymerase IV [Streptococcus pyogenes MGAS2096]
gi|417856180|ref|ZP_12501239.1| DNA polymerase IV [Streptococcus pyogenes HKU QMH11M0907901]
gi|189044610|sp|Q1JA16.1|DPO4_STRPB RecName: Full=DNA polymerase IV; Short=Pol IV
gi|189044611|sp|Q1JK63.1|DPO4_STRPC RecName: Full=DNA polymerase IV; Short=Pol IV
gi|94542711|gb|ABF32760.1| DNA polymerase IV [Streptococcus pyogenes MGAS9429]
gi|94546598|gb|ABF36645.1| DNA polymerase IV [Streptococcus pyogenes MGAS2096]
gi|387933135|gb|EIK41248.1| DNA polymerase IV [Streptococcus pyogenes HKU QMH11M0907901]
Length = 364
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 112/316 (35%), Positives = 175/316 (55%), Gaps = 36/316 (11%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++G+ +AM A + CP+ IF+ ++ KY + R++F +Y S+DEAYL
Sbjct: 61 ARKYGIHSAMSSKEAYERCPKAIFISGNYEKYRTVGEQIRRIFKRYTDVVEPMSIDEAYL 120
Query: 68 DITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVL 125
D+T + GI S ++IA+ ++ +++E GLTCSAGV+ N+ LAK+ SD KP+G VL
Sbjct: 121 DVTN--NKLGIKSAVKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKPHGLTLVL 178
Query: 126 PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADF 185
D + F++ LPI K G+GK + L D+ GI T +++L AV + D
Sbjct: 179 KED---ALCFLAKLPIEKFHGVGKKSVEKLHDM-GIYTGQDLL-------AVPEMTLIDH 227
Query: 186 FLSVGLGL-----GSTNTP--QARFRKSISSERTFSVTEDKALLYRKL---AEI---AEM 232
F G L G +N+P R RKSI SERT++ LLY++ AEI A+
Sbjct: 228 FGRFGFDLYRKARGISNSPVKSDRIRKSIGSERTYA-----KLLYQETDIKAEISKNAKR 282
Query: 233 LSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVS 290
++A +Q G+T+ LK++ A F T+ VTL + ++ I + A + +E P
Sbjct: 283 VAALLQDHKKLGKTIVLKVRYADFTTLTKRVTLPELTRNAAQIEQVAGDIFDSLSENPAG 342
Query: 291 LRLIGLRVTQFNEDKV 306
+RL+G+ +T EDKV
Sbjct: 343 IRLLGVTMTNL-EDKV 357
>gi|126640285|ref|YP_001083269.1| DNA polymerase IV [Acinetobacter baumannii ATCC 17978]
Length = 296
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 104/287 (36%), Positives = 157/287 (54%), Gaps = 13/287 (4%)
Query: 22 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 81
ARKLCP+++ + +F KY S +F +Y SLDEAYLD+TE ++ S
Sbjct: 6 ARKLCPQVVIIEPNFEKYRAISAQIHSIFQQYTTLIEPLSLDEAYLDVTENLKQIA-SAT 64
Query: 82 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 141
E+A +R ++ + GLT SAGVAPN+ LAKV SD NKPNG FV+ ++A +FI LP+
Sbjct: 65 EVAMHIREDIFRQTGLTASAGVAPNKFLAKVASDWNKPNGLFVIKPSQVA--SFIQDLPL 122
Query: 142 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGL-GLGSTNTP- 199
+KI G+GKVT+ L+ + ++T + LQK + AV H + + L G N P
Sbjct: 123 KKIPGVGKVTQEKLQQL-ELHTLGD-LQK--IEEAVLVHHFGKYGQQLYLYAQGIDNRPV 178
Query: 200 QA-RFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEV 258
QA R R+ IS E TF A +AE + ++K+ L R + +KLK +F+
Sbjct: 179 QAERARQQISKETTFDSDFTLAQCQPYWHGLAEKVWQSLEKKQLNARGVNIKLKLKNFQT 238
Query: 259 RTRAVTLQKYISSSEDILKHASVLL-KAELP--VSLRLIGLRVTQFN 302
+ + + I S +D+++ +LL + +P RLIG+ V Q
Sbjct: 239 LQHSKSFKNPIHSQQDLIQVLFLLLNEMHIPENFQFRLIGIGVYQLQ 285
>gi|392987494|ref|YP_006486087.1| DNA-damage-inducible protein P [Enterococcus hirae ATCC 9790]
gi|392334914|gb|AFM69196.1| DNA-damage-inducible protein P [Enterococcus hirae ATCC 9790]
Length = 315
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 100/301 (33%), Positives = 163/301 (54%), Gaps = 13/301 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++G+ +AM A +LCP+ IF P D KY+ S + R++F +Y S+DEAYL
Sbjct: 9 ARKYGIHSAMSAQKAYELCPQAIFKPGDHQKYSEISQIVREIFYRYTDIVEPVSIDEAYL 68
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLP 126
D+T R S I+IA ++ ++EE LTCSAGV+ N+ LAK+ SD KP G V P
Sbjct: 69 DVTNNKRNCK-SAIKIARLIQRDIWEEVKLTCSAGVSYNKFLAKLASDFQKPKGITIVAP 127
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHSTADF 185
D +TF+ +LPI K G+GK T + ++ GI T E++ +L F
Sbjct: 128 QD---ALTFLKALPIDKFHGVGKKTVPKMHEL-GIFTGEDLYNCTEMMLIQQFGKMGYSL 183
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLR 243
+ V G+ R RKS+ E T+ + ++A+L +L ++AE + +++
Sbjct: 184 YRKVR-GVHDAPVNVTRERKSVGKEHTYGQPLQTEEAVL-AQLQQLAEKVEESLKRVQKH 241
Query: 244 GRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQF 301
G+T+ LK++ + T+ VTL +YI E + AS++ + L + +RL+G+ +T
Sbjct: 242 GKTVVLKVRYTDYTTVTKRVTLPEYIYKKEALFYQASLIWEEILGIEQGIRLLGITLTNL 301
Query: 302 N 302
+
Sbjct: 302 D 302
>gi|121998646|ref|YP_001003433.1| DNA-directed DNA polymerase [Halorhodospira halophila SL1]
gi|254781922|sp|A1WY69.1|DPO4_HALHL RecName: Full=DNA polymerase IV; Short=Pol IV
gi|121590051|gb|ABM62631.1| DNA-directed DNA polymerase [Halorhodospira halophila SL1]
Length = 356
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 106/305 (34%), Positives = 155/305 (50%), Gaps = 12/305 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FG+R+A P AR+ CPE IF+ F +Y S +F + SLDEAYL
Sbjct: 50 ARAFGIRSAQPAAWARRRCPEAIFLRPRFDRYRAISRQIHGIFADFATTIEPLSLDEAYL 109
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T R RG S +A+ +R + EE GLT SAGV+ N+LLAK+ SD KP+G +V+P
Sbjct: 110 DVTGSQRFRG-SATHMAQAIRRRIREETGLTASAGVSYNKLLAKLASDEGKPDGLYVVPP 168
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
+ ++++ PIR++ G+G T L + GI ++L VF + A
Sbjct: 169 EDGP--AYVAAQPIRRLHGVGPATAARL-ERLGIRQVGDLLDWELADLHVFLGNRAGTLH 225
Query: 188 SVGLGLGSTNTPQARFRKSISSERTFS-VTEDKALLYRKLAEIAEMLSADMQKEGLRGRT 246
G+ R RKSI +ERTF T D ++++LA + ++ ++ L RT
Sbjct: 226 DAARGIDHRPVRPRRSRKSIGAERTFGDDTRDLGEIHQRLAPLITKVATRLEHHELVART 285
Query: 247 LTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL----KAELPVSL---RLIGLRVT 299
+TLKL+ A FE TR V+ ++ + DI LL PV L L GL+
Sbjct: 286 VTLKLRYADFESITRRVSPPGPVAQAADIEALIPALLAETEAGSRPVRLLGVSLSGLQPK 345
Query: 300 QFNED 304
Q +D
Sbjct: 346 QREQD 350
>gi|42521969|ref|NP_967349.1| DNA polymerase IV [Bdellovibrio bacteriovorus HD100]
gi|39574499|emb|CAE78003.1| DNA polymerase IV [Bdellovibrio bacteriovorus HD100]
Length = 356
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 109/313 (34%), Positives = 161/313 (51%), Gaps = 15/313 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR+AMP A +LCP+L+ +P F Y S R++ ++ SLDEAYL
Sbjct: 48 ARKFGVRSAMPSSQAVRLCPQLVLIPPHFDLYKAESRKVREIMERFTNKIEPLSLDEAYL 107
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-P 126
D+T+ C + G S IA+E+R ++ E LT SAGVAPN+ LAK+ SD KPNGQFV+ P
Sbjct: 108 DVTD-CEQFGGSATLIAQEIRRLIFTELNLTASAGVAPNKFLAKIASDWKKPNGQFVVRP 166
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFF 186
D V TF+ LP+ KI G+GKVT + D+ G+ TC ++ + L + + S A
Sbjct: 167 QD---VETFVKDLPVEKIFGVGKVTAQKMHDL-GLRTCGDIQKYTVLELSHWFGSRAAEL 222
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALL---YRKLAEIAEMLSADMQKEGLR 243
G+ RKS++ E T++ +D L + L + E M +
Sbjct: 223 YDFSRGIDHREVITEWERKSLTVEETYN--KDLPTLQDCLKTLPSLYEDFVRRMDRGQYH 280
Query: 244 GRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKA--ELPVSLRLIGLRVTQF 301
R L +K F+ + T ++ IS + +L KA V +RL+GL V
Sbjct: 281 DRIKGLVIKLKFFDF--KQTTHEEVISELPTLQDFERLLEKAWNRRGVPVRLVGLGVRLG 338
Query: 302 NEDKVRAPSDPTQ 314
+ K + SD +Q
Sbjct: 339 TQKKFSSESDSSQ 351
>gi|255021890|ref|ZP_05293900.1| DNA polymerase IV [Acidithiobacillus caldus ATCC 51756]
gi|254968714|gb|EET26266.1| DNA polymerase IV [Acidithiobacillus caldus ATCC 51756]
Length = 390
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 100/292 (34%), Positives = 150/292 (51%), Gaps = 7/292 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFG+R+AM AR LCP+ IFV Y S + Y SLDEA+L
Sbjct: 75 ARRFGIRSAMSAARARSLCPQAIFVRPRMDAYREVSRQVMTILRSYTALVEPLSLDEAFL 134
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T + G +EIA E+ ++ E GLT SAGV+ N+LLAK+ SD KP+G FV+P
Sbjct: 135 DVTAATTD-GTLAVEIAREILDRIHRETGLTASAGVSYNKLLAKLASDWRKPHGLFVIPP 193
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
+R + F++ LP+ K+ G+G T L G+ T ++ + +F
Sbjct: 194 ERG--LAFLAPLPVGKLHGVGPATVKKL-SAMGVETVLDLRNLSLEFLVTHFGKSGGWFY 250
Query: 188 SVGLGLGSTNTPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLRGRT 246
V + +R RKS+ +ERTFS D++++ L E+A ++A +Q L G T
Sbjct: 251 DVARAIDERPVQPSRQRKSVGTERTFSKNLADRSVMLTTLQEMAAQVAARLQVLHLAGHT 310
Query: 247 LTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELP--VSLRLIGL 296
+ +K + F TRA T + I S++ I LL +P S+RL+G+
Sbjct: 311 VHIKARFPDFTTVTRAYTATEGIGSADAIAAWLPELLDRAVPKSTSVRLLGI 362
>gi|220915280|ref|YP_002490584.1| DNA-directed DNA polymerase [Anaeromyxobacter dehalogenans 2CP-1]
gi|219953134|gb|ACL63518.1| DNA-directed DNA polymerase [Anaeromyxobacter dehalogenans 2CP-1]
Length = 418
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 105/307 (34%), Positives = 166/307 (54%), Gaps = 13/307 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVF---CKYDPNFMAASLDE 64
AR+FGVR+A+P AR+LCP+ +F+P F + YS+L+R+VF +Y P SLDE
Sbjct: 55 ARKFGVRSALPTARARRLCPDGVFLPPRFGR---YSELSRRVFDVYRRYTPLVEPLSLDE 111
Query: 65 AYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFV 124
A+LD++ R +G EIA ++ +V E GL SAGVA ++ AK+ +D+ KP+G V
Sbjct: 112 AFLDVS-ASRALHGTGPEIARAIKVAVRGECGLAVSAGVAEVKMAAKIATDLGKPDGLVV 170
Query: 125 LPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTA 183
+P V F++ LP+ ++ G+G+VTE LR + G+ T ++ + S L A + A
Sbjct: 171 VPAG--GVAAFLAPLPVGRLWGVGEVTEATLRRI-GVATIGDLARMPESALAAALGPNHA 227
Query: 184 DFFLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGL 242
++ G + KS+ +E TF + L R+L A + ++ GL
Sbjct: 228 RGLRALARGEDAREVVPDEEAKSVGAEDTFDHDLLGRTALERELLAQAGTVGRRLRAAGL 287
Query: 243 RGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELPVSLRLIGLRVTQF 301
G +TLK+K A F + TR VTL++ I + A L + +L +RL G+ V+ F
Sbjct: 288 AGHVVTLKVKYADFTLVTRRVTLERATDDDRAIFEAARAQLERVDLRRPVRLTGISVSGF 347
Query: 302 NEDKVRA 308
D+ R
Sbjct: 348 AGDEERG 354
>gi|373956101|ref|ZP_09616061.1| DNA polymerase IV [Mucilaginibacter paludis DSM 18603]
gi|373892701|gb|EHQ28598.1| DNA polymerase IV [Mucilaginibacter paludis DSM 18603]
Length = 368
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 107/317 (33%), Positives = 168/317 (52%), Gaps = 9/317 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG+R+AMP A +LCP IFV F Y S R++F +Y SLDEAYL
Sbjct: 57 ARKFGIRSAMPSKKALQLCPHAIFVRPRFAVYKEVSQQIREIFSRYTDLIEPLSLDEAYL 116
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLP 126
D+T G S IEIA++++ ++ +E LT SAGV+ N+ +AK+ SDINKPNG +F+ P
Sbjct: 117 DVTNDKLNIG-SAIEIAKQIKQAIQDELRLTASAGVSINKFVAKIASDINKPNGLKFIGP 175
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFF 186
+ + F+ LP+ K G+GKVT ++ + G++T ++ + F+
Sbjct: 176 S---GIENFMELLPVEKFFGVGKVTAEKMKKM-GLHTGADLKKLTEDEMHRHFGKAGRFY 231
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
+ GL + R KS+ +E TF+ A + +L +IA ++ +++ L+GR
Sbjct: 232 YQIVRGLDNREVQPHRETKSMGAEDTFAYDLTTLAEMNAELDKIAVTVANRLERYQLKGR 291
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL--KAELPVSLRLIGLRVTQFNE 303
T+TLK+K + F+ TR + I+ E I A LL E +RL+G+ ++ F E
Sbjct: 292 TVTLKVKYSDFKQITRNQSSAAPIADLESITATAKQLLFTSFEEGQKVRLLGISLSNFGE 351
Query: 304 DKVRAPSDPTQKTLTNF 320
+R D L F
Sbjct: 352 VILRQKQDKQTGQLELF 368
>gi|254876929|ref|ZP_05249639.1| conserved hypothetical protein [Francisella philomiragia subsp.
philomiragia ATCC 25015]
gi|254842950|gb|EET21364.1| conserved hypothetical protein [Francisella philomiragia subsp.
philomiragia ATCC 25015]
Length = 350
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 104/300 (34%), Positives = 164/300 (54%), Gaps = 23/300 (7%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR +G+ +AMP IA + CP LI + TDF KY S + R+VF + SLDEAYL
Sbjct: 51 AREYGIHSAMPTAIAMQKCPNLILLNTDFAKYKAASSIIREVFYTFTDKVEPLSLDEAYL 110
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T+V + S IA+ ++ ++ + GLT SAGVAPN+LLAK+ SDINKPNG +V+
Sbjct: 111 DVTDVAAYKN-SATLIAQAIKQEIFNKTGLTGSAGVAPNKLLAKIASDINKPNGLYVITP 169
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAV-----FSHST 182
++ V F+ +LP++K+ G+GKV++ L+ + + TC + LQ+ SL V F S
Sbjct: 170 EQ--VNNFVKNLPVKKLFGVGKVSQEKLKSM-NVETCLD-LQQLSLATLVDKFGKFGSSL 225
Query: 183 ADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALL---YRKLAEIAEMLSADMQK 239
++ G+ + R RKS+S E T+ ED L KL + + L++ M +
Sbjct: 226 YNY----ARGIDNREVNPVRIRKSVSVENTY--LEDLKTLGACLEKLPNLYDKLTSRMTE 279
Query: 240 EGLRGRT-LTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRV 298
E + + +K F +T + K + + +LK+ + L + +RLIG+ V
Sbjct: 280 EHYKSIIGIVVKFTDTKFN-KTSLTRVAKTL--DKKVLKNLIIELHQKQNYHIRLIGIGV 336
>gi|333381439|ref|ZP_08473121.1| hypothetical protein HMPREF9455_01287 [Dysgonomonas gadei ATCC
BAA-286]
gi|332830409|gb|EGK03037.1| hypothetical protein HMPREF9455_01287 [Dysgonomonas gadei ATCC
BAA-286]
Length = 348
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 111/307 (36%), Positives = 167/307 (54%), Gaps = 19/307 (6%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARR+GVR+AM A + CP+LIFVP F Y S ++F +Y SLDEA+L
Sbjct: 39 ARRYGVRSAMASKTALRKCPQLIFVPARFDVYKSVSRQIMEIFHEYTDLVEPLSLDEAFL 98
Query: 68 DITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL- 125
D+TE + I S +IA+E++ + E LT SAGV+ N+ LAK+ SD NKP+G FV+
Sbjct: 99 DVTE--NNKNIPSATQIAQEIKQKILEATRLTASAGVSFNKFLAKIASDQNKPDGLFVVK 156
Query: 126 PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTAD 184
P + F+ +L I + G+GKVT + + GI ++ Q+ + L AVF +
Sbjct: 157 PKN---AEQFVETLAIEQFFGVGKVTAKRMHQL-GIKNGWDLKQRSENELIAVFGKAGHI 212
Query: 185 FFLSVGLGLGSTNTPQARFRKSISSERTFS----VTEDKALLYRKLAEIAEMLSADMQKE 240
+F + + R RKS+SSE TF E+ AL+ L E+A D++++
Sbjct: 213 YFQN-ARAIDDRPVESQRIRKSMSSETTFEHDIDNLEELALI---LDEVARDAFHDIERK 268
Query: 241 GLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK-AELPVSLRLIGLRVT 299
+ RT+TLK+K A F+ TR+ T ++ E K LL+ +L +RLIGL +
Sbjct: 269 KFKARTVTLKIKYADFKTITRSKTFPASVADYESFYKAGFELLQNIDLSPKVRLIGLGLK 328
Query: 300 QFNEDKV 306
NED++
Sbjct: 329 N-NEDEM 334
>gi|402756923|ref|ZP_10859179.1| DNA polymerase IV [Acinetobacter sp. NCTC 7422]
Length = 355
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 103/301 (34%), Positives = 158/301 (52%), Gaps = 13/301 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FG+R+AM ARKLCP+++ + +F KY S ++F +Y SLDEAYL
Sbjct: 51 ARVFGLRSAMSMGQARKLCPQVVVIEPNFEKYREVSAQIHQIFQQYTTLIEPLSLDEAYL 110
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+TE + S E+A ++R ++ GLT SAGVAPN+ LAK+ SD NKPNG FV+
Sbjct: 111 DVTENLKNIP-SATEVAAQIRADIFAVTGLTASAGVAPNKFLAKIASDWNKPNGLFVIKP 169
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQK--GSLLCAVFSHSTADF 185
+ V++FI L + KI G+GKVT+ L+ + ++T + LQK ++L F
Sbjct: 170 HQ--VLSFIQDLALNKIPGVGKVTQERLQQL-NLHTLGD-LQKIEENVLIHHFGKYGKQL 225
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
+L G+ R R+ IS E TF A + E + + K+ L R
Sbjct: 226 YL-YAQGIDHRPVKAERERQQISKEITFDEDYTFAQCSHAWQPLTEQVWRSLNKKQLTAR 284
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV----SLRLIGLRVTQF 301
+T+KLK +F+V + + ++ + S +D L + L E+ + RL+G+ V Q
Sbjct: 285 GVTIKLKLKNFQVLQHSKSFKQALQSQQD-LGQVILQLLDEMHIDPESQFRLVGVGVYQL 343
Query: 302 N 302
Sbjct: 344 Q 344
>gi|359687051|ref|ZP_09257052.1| DNA polymerase IV [Leptospira licerasiae serovar Varillal str.
MMD0835]
gi|418751085|ref|ZP_13307371.1| ImpB/MucB/SamB family protein [Leptospira licerasiae str. MMD4847]
gi|418757063|ref|ZP_13313251.1| ImpB/MucB/SamB family / IMS family HHH motif / ImpB/MucB/SamB
family C-terminal domain multi-domain protein
[Leptospira licerasiae serovar Varillal str. VAR 010]
gi|384116734|gb|EIE02991.1| ImpB/MucB/SamB family / IMS family HHH motif / ImpB/MucB/SamB
family C-terminal domain multi-domain protein
[Leptospira licerasiae serovar Varillal str. VAR 010]
gi|404273688|gb|EJZ41008.1| ImpB/MucB/SamB family protein [Leptospira licerasiae str. MMD4847]
Length = 367
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 104/303 (34%), Positives = 166/303 (54%), Gaps = 17/303 (5%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR+AMP A +LCP IFV F Y S R++F +Y SLDEA+L
Sbjct: 49 ARKFGVRSAMPCSQAARLCPSGIFVTPRFEAYKKVSSKIRQIFLEYTDLVEMLSLDEAFL 108
Query: 68 DITEVCRERGIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP 126
D+T+ ++ I ++A+E+R ++EE LT SAGV+ N+ LAK+ +D NKPNG ++
Sbjct: 109 DVTQ--NKKNIPYATQVAKEIREKIFEETQLTASAGVSINKFLAKIATDQNKPNGMTIVR 166
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFF 186
++ V FI SL + GIGKVT + GI +++ +K + + +F
Sbjct: 167 PEQ--VEKFIESLDVSVFPGIGKVTLKKMH-ALGIKKGKDLKEKSLEMLDQNFGKSGRWF 223
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
+V GL R RKS+ +E TF+ E+ + ++R+L++IAE L + ++ G+
Sbjct: 224 YAVCRGLDDRPVEPFRERKSLGAESTFAKDLENSSEIFRELSDIAEELERRLLQKPFPGK 283
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL--------KAELPVSLRLIGLR 297
T+TLK+K + F +TR++T ++ + S LL KA P+ RL+GL
Sbjct: 284 TITLKVKFSDFTQKTRSITEDYSYLDKNELYRIGSKLLEEFILGSGKAIFPI--RLLGLS 341
Query: 298 VTQ 300
++
Sbjct: 342 LSH 344
>gi|429743284|ref|ZP_19276854.1| putative DNA polymerase IV [Neisseria sp. oral taxon 020 str.
F0370]
gi|429165943|gb|EKY07963.1| putative DNA polymerase IV [Neisseria sp. oral taxon 020 str.
F0370]
Length = 360
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 101/268 (37%), Positives = 149/268 (55%), Gaps = 26/268 (9%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++G+ +AMP AR+LCP+ +FV F Y S +F ++ SLDEAYL
Sbjct: 49 ARKYGLHSAMPAVTARRLCPQAVFVAPRFPLYRQVSQQIHGIFRRHTDLIEPLSLDEAYL 108
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T + +G +IA +R + E GLT SAG+A N+ LAK+ SD NKP+GQF LP
Sbjct: 109 DVTRNKQNLPYAG-DIARLIRADIRSETGLTASAGIAANKFLAKIASDWNKPDGQFSLPP 167
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADF 185
+ F+++LP+ KI G+GKVT + + G++T ++ +G L A+
Sbjct: 168 QKSEA--FLATLPLGKIPGVGKVTLQKMHRL-GLSTAGDLRRFSRGEL---------ANL 215
Query: 186 FLSVG-----LGLGSTNTP--QARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSAD 236
F G L G+ N P R R IS+E T + + ALL L ++AE L A
Sbjct: 216 FGKWGYRLYDLARGTDNRPVKPDRERLQISTETTLARDLPLSAALLC--LPQLAEELWAQ 273
Query: 237 MQKEGLRGRTLTLKLKTASFEVRTRAVT 264
+++ R R++TLKLKTASF + TR++T
Sbjct: 274 AERKKCRARSVTLKLKTASFRILTRSLT 301
>gi|432331934|ref|YP_007250077.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Methanoregula formicicum SMSP]
gi|432138643|gb|AGB03570.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Methanoregula formicicum SMSP]
Length = 385
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 107/318 (33%), Positives = 167/318 (52%), Gaps = 24/318 (7%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++G+R+AMP A LCP +F+P DF Y S + Y S+DEA+L
Sbjct: 80 ARKYGIRSAMPISRAYVLCPHAVFLPPDFPAYVQASAAVMAILRSYGFRMEQVSIDEAFL 139
Query: 68 DITEVCRERGISGI--EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL 125
+++ + G G AEE+R +++ GL+CS G+AP+R++AK+ SD KP G ++
Sbjct: 140 NVSSL----GDFGTAQAFAEEVRACIHKRLGLSCSIGIAPSRIIAKIASDFRKPGGLTIV 195
Query: 126 --PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHST 182
P R F+S LP+R+I G+GK E +L ++ GI T ++ Q+ +L F S
Sbjct: 196 TPPTAR----DFLSPLPVRRIPGVGKKAEGMLFEM-GIRTIGDLAQQDVQVLIGRFGRS- 249
Query: 183 ADFFLSVGLGLGSTNTPQARFR-KSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKE 240
A F + G+ S+ P+ KSIS E TF + T+D+ L + E+ + A + E
Sbjct: 250 AIFLHQLACGIDSSGVPEGSGETKSISRETTFEIDTDDREHLLSVIDELIRCVGASLAAE 309
Query: 241 GLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL-PVSLRLIGLRVT 299
GLR RTLTLK++ + F R+R + + + A L E +RLIG+R++
Sbjct: 310 GLRFRTLTLKIRYSGFITRSRGRSFSHGTDNPAAMKSLAHSLFCEEYRGGKVRLIGIRLS 369
Query: 300 QFNEDKVRAPSDPTQKTL 317
F + D +Q TL
Sbjct: 370 SFEK------RDASQATL 381
>gi|116512975|ref|YP_811882.1| DNA polymerase IV [Lactococcus lactis subsp. cremoris SK11]
gi|123025143|sp|Q02WA3.1|DPO4_LACLS RecName: Full=DNA polymerase IV; Short=Pol IV
gi|116108629|gb|ABJ73769.1| Nucleotidyltransferase/DNA polymerase for DNA repair [Lactococcus
lactis subsp. cremoris SK11]
Length = 364
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 100/309 (32%), Positives = 167/309 (54%), Gaps = 22/309 (7%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FG+ +AM A LCP+ IF+ ++ KYT S R++F +Y N AAS+DEAYL
Sbjct: 61 ARAFGIHSAMSAKEAYDLCPQAIFISGNYEKYTKVSKQVREIFKRYTDNIEAASIDEAYL 120
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLP 126
D+TE + S I+IA+ ++ ++ E GLTCSAGV+ N+ LAK+ SD KP+G ++P
Sbjct: 121 DVTE-NKIGAQSAIKIAKLIQHDIFVELGLTCSAGVSYNKFLAKIASDYEKPHGLTLIMP 179
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADF 185
++ + F++ LP+ K G+GK T L G T ++ + + L F +
Sbjct: 180 DE---ALEFLAKLPVEKFHGVGKATVPKLH-ALGFFTGGDLQKADPVDLAEKFGIYGWEL 235
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLY------RKLAEIAEMLSADMQK 239
F G+ ++ R RKS+ ERT+ LLY +L +I++ +S +++
Sbjct: 236 FQKAN-GIHNSKVKNHRERKSVGKERTYG-----KLLYLPDDIKAELIKISKQVSESLKR 289
Query: 240 EGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK---AELPVSLRLIGL 296
L+G + LKL+ + F T+ ++ + + S EDI + A + + + + +RL+G+
Sbjct: 290 HQLKGNIIILKLRYSDFTTLTKRKSMVENLDSPEDIAEAAQQIFEEIDYDESLGVRLLGV 349
Query: 297 RVTQFNEDK 305
V+ F K
Sbjct: 350 TVSGFGVQK 358
>gi|15677305|ref|NP_274460.1| DNA polymerase IV [Neisseria meningitidis MC58]
gi|22095639|sp|Q9JYS8.1|DPO4_NEIMB RecName: Full=DNA polymerase IV; Short=Pol IV
gi|7226689|gb|AAF41808.1| DNA-damage-inducible protein P [Neisseria meningitidis MC58]
Length = 318
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 94/261 (36%), Positives = 146/261 (55%), Gaps = 12/261 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG+ +AM A++LCP+ ++VP F Y S VF +Y SLDEAYL
Sbjct: 49 ARQFGLHSAMSVATAKRLCPQAVYVPPHFDLYRQVSAQIHAVFRRYTDLIEPLSLDEAYL 108
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T + +G ++A+E+R +++ E GLT SAG+APN+ LAK+ SD KPNGQFVLP
Sbjct: 109 DVTRNFKNIPYAG-DVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPP 167
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADF 185
+ VM F+ +LP+ KI G+GKVT ++ + G+ T ++ ++G LL +H
Sbjct: 168 HK--VMAFLETLPLGKIPGVGKVTLKKMQSL-GMRTAGDLRRFERGELL----NHFGRYG 220
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLR 243
+ L G+ P R+ + ++ ED L L +AE L + ++ +
Sbjct: 221 YRLYDLVRGTDERPVKAERERLQISTEITLPEDLPLEQAAGHLPHLAEDLWRQITRKNVE 280
Query: 244 GRTLTLKLKTASFEVRTRAVT 264
+++TLKLKT F + TR +T
Sbjct: 281 AQSVTLKLKTYDFRIITRTLT 301
>gi|414075047|ref|YP_007000264.1| DNA polymerase IV [Lactococcus lactis subsp. cremoris UC509.9]
gi|413974967|gb|AFW92431.1| DNA polymerase IV [Lactococcus lactis subsp. cremoris UC509.9]
Length = 346
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 100/309 (32%), Positives = 167/309 (54%), Gaps = 22/309 (7%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FG+ +AM A LCP+ IF+ ++ KYT S R++F +Y N AAS+DEAYL
Sbjct: 43 ARAFGIHSAMSAKEAYDLCPQAIFISGNYEKYTKVSKQVREIFKRYTDNIEAASIDEAYL 102
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLP 126
D+TE + S I+IA+ ++ ++ E GLTCSAGV+ N+ LAK+ SD KP+G ++P
Sbjct: 103 DVTE-NKIGAQSAIKIAKLIQHDIFVELGLTCSAGVSYNKFLAKIASDYEKPHGLTLIMP 161
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADF 185
++ + F++ LP+ K G+GK T L G T ++ + + L F +
Sbjct: 162 DE---ALEFLAKLPVEKFHGVGKATVPKLH-ALGFFTGGDLQKADPVDLAEKFGIYGWEL 217
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLY------RKLAEIAEMLSADMQK 239
F G+ ++ R RKS+ ERT+ LLY +L +I++ +S +++
Sbjct: 218 FQKAN-GIHNSKVKNHRERKSVGKERTYG-----KLLYLPDDIKAELIKISKQVSESLKR 271
Query: 240 EGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK---AELPVSLRLIGL 296
L+G + LKL+ + F T+ ++ + + S EDI + A + + + + +RL+G+
Sbjct: 272 HQLKGNIIILKLRYSDFTTLTKRKSMVENLDSPEDIAEAAQQIFEEIDYDESLGVRLLGV 331
Query: 297 RVTQFNEDK 305
V+ F K
Sbjct: 332 TVSGFGVQK 340
>gi|238060265|ref|ZP_04604974.1| DNA-directed DNA polymerase [Micromonospora sp. ATCC 39149]
gi|237882076|gb|EEP70904.1| DNA-directed DNA polymerase [Micromonospora sp. ATCC 39149]
Length = 419
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 103/314 (32%), Positives = 159/314 (50%), Gaps = 13/314 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARR+G+R+AMP AR LCP +++P DF +YT S ++F P SLDEA+L
Sbjct: 69 ARRYGIRSAMPIMRARSLCPHAVYLPPDFAQYTAASRAVMQIFRDVTPLVEPLSLDEAFL 128
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+ R G IA +R V +E GLTCS GVAP++ +AK+ S KP+G V+P
Sbjct: 129 DVAGARRLFGPPA-RIARSIRARVADEQGLTCSVGVAPSKFVAKLGSTRAKPDGLLVVPA 187
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFF 186
DR V+ F+ LP+ + G+G+ + LR G+ T ++ + +L + A
Sbjct: 188 DR--VLDFLRPLPVDALWGVGERSAETLRR-LGLATIGDLAEAPYGMLRKALGEAAAAHL 244
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
+ G + KSI +E TF D + R L +AE + A +++ G GR
Sbjct: 245 HGLAQGRDPRRVTPEQVEKSIGAEVTFDADVADPLEIRRALLALAEKVGARLRRAGQVGR 304
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS-LRLIGLRVTQFNED 304
T+++K++TA F R+ TL ++ + A L A P +RL+G+R+
Sbjct: 305 TVSIKVRTADFRTVNRSRTLDVATDTARETFDTAWALYTALDPSDRIRLVGVRMEGL--- 361
Query: 305 KVRAPSDPTQKTLT 318
AP+ T + LT
Sbjct: 362 ---APAGQTPQQLT 372
>gi|378827935|ref|YP_005190667.1| DNA polymerase IV [Sinorhizobium fredii HH103]
gi|365180987|emb|CCE97842.1| DNA polymerase IV [Sinorhizobium fredii HH103]
Length = 371
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 99/298 (33%), Positives = 156/298 (52%), Gaps = 9/298 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGV +AMP A++ CP+LIFV F Y S R +F +Y P SLDEAYL
Sbjct: 64 ARKFGVHSAMPSVTAKRKCPDLIFVKPRFDVYRAVSLQIRSIFAEYTPMIEPLSLDEAYL 123
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-P 126
D+TE + I+ EIA E+R + + GL SAG++ N+ LAK+ SD+NKPNGQ V+ P
Sbjct: 124 DVTENLKGIEIA-TEIAAEIRAKIKQVTGLNASAGISYNKFLAKMASDLNKPNGQAVITP 182
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFF 186
+ A F+ ++P++K G+G T + + GI T ++ K + +F
Sbjct: 183 KNGQA---FVEAVPVKKFHGVGPATAEKMHRL-GIETGADLKGKTQEFLVEHFGKSGPYF 238
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRK-LAEIAEMLSADMQKEGLRGR 245
+ G+ + R RKS+ +E TFS R+ L + E + + G+ +
Sbjct: 239 YGIARGIDNREVKPDRVRKSVGAEDTFSEDIHSFEPAREGLQPLIEKVWDYCEANGIGAK 298
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQF 301
T+TLK+K A F TR+ T+ + + D+ + +LL P +RL+G+ ++
Sbjct: 299 TVTLKVKYADFSQITRSKTVAAPLQTIGDLEEVVGLLLAPIFPPRRGIRLLGVTLSSL 356
>gi|332715601|ref|YP_004443067.1| DNA polymerase IV [Agrobacterium sp. H13-3]
gi|325062286|gb|ADY65976.1| DNA polymerase IV [Agrobacterium sp. H13-3]
Length = 359
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 97/293 (33%), Positives = 154/293 (52%), Gaps = 9/293 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FGV +AMP A++ CP+LIFVP F Y S R++F +Y P SLDEAYL
Sbjct: 52 ARTFGVHSAMPSVTAKRKCPDLIFVPPRFEVYRQVSQQIREIFAEYTPLIEPLSLDEAYL 111
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-P 126
D+TE + I+ EIA E+R + L SAG++ N+ LAK+ SD+NKPNGQ V+ P
Sbjct: 112 DVTENLKGMEIA-TEIALEIRAKIKAVTSLNASAGISYNKFLAKMASDLNKPNGQAVITP 170
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFF 186
+ F+ +L ++K G+G T ++ GI T ++ K + +F
Sbjct: 171 KNGPG---FVEALAVKKFHGVGPATAERMKR-HGIETGLDLKSKSLGFLQQHFGKSGPYF 226
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
++ G+ R RKS+ +E TF+ +D L +L +A+ + + + G+
Sbjct: 227 YNIARGIDERQVKPDRIRKSVGAEDTFAEDIDDLNLAKAELGPLAQKVWRYCEAHDITGK 286
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS--LRLIGL 296
T+T+K+K + F TR+ T+ +S I + + LL + P +RL+G+
Sbjct: 287 TVTVKIKYSDFSQATRSKTVSGAVSDLATIQEMSETLLASVFPFKRPVRLLGI 339
>gi|350532188|ref|ZP_08911129.1| DNA polymerase IV [Vibrio rotiferianus DAT722]
Length = 342
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 117/315 (37%), Positives = 159/315 (50%), Gaps = 32/315 (10%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR+AMP A +LCP L+ VP Y S R +F +Y P SLDEAYL
Sbjct: 40 ARKFGVRSAMPTARALQLCPNLLVVPGRMHVYKQVSQQIRAIFERYTPLIEPLSLDEAYL 99
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T+ RG S IAE +R +Y E GLT SAG+AP + LAKV SD+NKPNGQFV+P
Sbjct: 100 DVTDSKMCRG-SATLIAESIRNDIYSELGLTASAGIAPIKFLAKVASDMNKPNGQFVIPP 158
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFF 186
++ V + LP+ KI G+GKV+ L G CE++ L F A +
Sbjct: 159 EK--VQEVVDKLPLEKIPGVGKVSLEKLHQA-GFYLCEDIKNSDYRELLRQFGRQGASLW 215
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFS-----------VTEDKALLYRKLAEIAEMLSA 235
G+ R RKS+ ERTFS V EDK L+ +L E S
Sbjct: 216 -KRSHGIDDREVVVERERKSVGVERTFSENIATYDECWKVIEDK--LFPELERRLEKASP 272
Query: 236 D--MQKEGLRGRTLTLKLKTASFEVRT-RAVTLQKYISSSEDILKHASVLLKAELPVSLR 292
D + K+G +KLK A F++ T + Q + + +L+ +LK + +R
Sbjct: 273 DKSIIKQG-------IKLKFADFQLTTIEHIHPQLELEDFKVLLRD---ILKRQNGREIR 322
Query: 293 LIGLRVTQFNEDKVR 307
L+GL V E + R
Sbjct: 323 LLGLSVMLKPEQQAR 337
>gi|182679061|ref|YP_001833207.1| DNA-directed DNA polymerase [Beijerinckia indica subsp. indica ATCC
9039]
gi|182634944|gb|ACB95718.1| DNA-directed DNA polymerase [Beijerinckia indica subsp. indica ATCC
9039]
Length = 373
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 106/306 (34%), Positives = 156/306 (50%), Gaps = 11/306 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGV +AMP A + CP+LIFVP F Y S R +F ++ SLDEAYL
Sbjct: 61 ARKFGVHSAMPSVTALRKCPDLIFVPPRFDIYKAVSRRIRAIFAEHTALIEPLSLDEAYL 120
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T R S EIAE++R + E GLT SAGV+ N+ LAK+ SD NKPNG FV+
Sbjct: 121 DVTSNLRNVA-SATEIAEQIRARILAETGLTASAGVSYNKFLAKLASDHNKPNGLFVI-T 178
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
+M F+ +LP+ K GIG T + + I T ++ + ++
Sbjct: 179 PKMGP-GFVEALPVSKFHGIGPATAAKMEKL-AIATGRDLKARPLAFLQQHFGKAGTYYY 236
Query: 188 SVGLGLGSTNTPQARFRKSISSERTFSV---TEDKALLYRKLAEIAEMLSADMQKEGLRG 244
+ G+ R RKSI +E TF++ T + A Y L I E + + LR
Sbjct: 237 WIARGVDERPVRPDRERKSIGAENTFAIDLYTFEAA--YAALTPIMEKVWRSREMMNLRA 294
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS--LRLIGLRVTQFN 302
RT+TLK+K A F+ TR+ T + I + + + LL P + +RL+G+ ++ F
Sbjct: 295 RTVTLKVKYADFQQITRSRTDDEGIVTRVLFEERVASLLAPLFPTTKGIRLLGVTLSAFA 354
Query: 303 EDKVRA 308
+ + A
Sbjct: 355 KPEPEA 360
>gi|218780742|ref|YP_002432060.1| DNA-directed DNA polymerase [Desulfatibacillum alkenivorans AK-01]
gi|254781919|sp|B8FBE8.1|DPO4_DESAA RecName: Full=DNA polymerase IV; Short=Pol IV
gi|218762126|gb|ACL04592.1| DNA-directed DNA polymerase [Desulfatibacillum alkenivorans AK-01]
Length = 396
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 104/300 (34%), Positives = 160/300 (53%), Gaps = 13/300 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR GVR+AMP ARKLCP +F+P +Y S ++F +Y P SLDEA++
Sbjct: 49 ARALGVRSAMPIVTARKLCPRGVFLPVRRARYQEISRKVFEIFHQYTPLVEPISLDEAFM 108
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T R G SG EIA +R + G+T SAG+A N+L+AK+ SD+ KPNG V+P
Sbjct: 109 DVTSSTRLFG-SGEEIAANIRRQIESSLGITASAGIAKNKLVAKIASDLCKPNGLLVVPA 167
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHSTADFF 186
D+ F+ LPI ++ G+G + + L G+ T ++ + +L A F + +
Sbjct: 168 DQ--TQEFLDPLPISRLWGVGPASRNKLIS-LGVKTIRDVRKLTQEMLSANFGRN-GEVI 223
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFS---VTEDKALLYRKLAEIAEMLSADMQKEGLR 243
+ G+ KSI E TF T ++A Y+ + ++E ++ M+KE
Sbjct: 224 YAFARGMDDRPVEPPGAAKSIGREITFDRNVYTLEEA--YKWMLFLSERVARRMRKEEAT 281
Query: 244 GRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS--LRLIGLRVTQF 301
GRT+ +K+K A F TR+VTL+ +I HA LL+ L S +RL+G+ ++Q
Sbjct: 282 GRTVNIKVKYADFIQVTRSVTLESPTDDPGEIYTHAKKLLQKTLVGSKAVRLLGVTLSQL 341
>gi|167563378|ref|ZP_02356294.1| DNA polymerase IV [Burkholderia oklahomensis EO147]
gi|167570546|ref|ZP_02363420.1| DNA polymerase IV [Burkholderia oklahomensis C6786]
Length = 394
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 108/302 (35%), Positives = 166/302 (54%), Gaps = 20/302 (6%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARR+GV +AM +A + CPEL+ +P +Y S L ++ Y P+ SLDEAYL
Sbjct: 69 ARRYGVHSAMSSALAMRKCPELLILPPAMDRYRAASRLIMAIYRDYTPDVEPLSLDEAYL 128
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-P 126
D++ R +G SG IA E+R V++ G+T SAGVAPN+ +AK+ SD NKP+G FV+ P
Sbjct: 129 DVSRATRCQG-SGTLIAREIRERVHDTVGVTVSAGVAPNKFIAKIASDWNKPDGLFVVRP 187
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADF- 185
++ V F+++LP+RK+ G+GKVT L D GI TC+E L+ SL H F
Sbjct: 188 HE---VDAFVAALPVRKLHGVGKVTAARL-DRLGIRTCDE-LRGWSLF--DLHHEFGAFG 240
Query: 186 --FLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEI---AEMLSADMQKE 240
+ G+ + RKS+S E T+ +D L + AEI +L A +++
Sbjct: 241 RRLYELAHGIDERPVRADQERKSVSVETTY--VQDLDTLDQCAAEIRRLTALLDARIERA 298
Query: 241 G-LRG-RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRV 298
G +R R L +K++ A F+ RT + + + A L++ + PV L +G+R+
Sbjct: 299 GAVRSIRKLYVKIRFADFQ-RTTVECVADATDAETAVALLAKGLVRRKQPVRLLGVGVRI 357
Query: 299 TQ 300
+
Sbjct: 358 DE 359
>gi|389809863|ref|ZP_10205529.1| DNA polymerase IV [Rhodanobacter thiooxydans LCS2]
gi|388441393|gb|EIL97669.1| DNA polymerase IV [Rhodanobacter thiooxydans LCS2]
Length = 363
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 112/309 (36%), Positives = 153/309 (49%), Gaps = 9/309 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FGVR+AMP A +LCP+LIFVP DF +Y S R++F ++ SLDEAYL
Sbjct: 55 ARVFGVRSAMPAIRAERLCPQLIFVPPDFVRYKAVSRQIREIFARHTELIEPLSLDEAYL 114
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T G S AE +R ++ EE LT SAGVAPN+ LAK+ SD KP+G FV+
Sbjct: 115 DVTTTKSALG-SATATAEAIRAAIREETRLTASAGVAPNKFLAKIASDFRKPDGLFVVRP 173
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
+ V TF++ LP+ ++ G+GKV E L GI T E+
Sbjct: 174 QQ--VETFLTPLPVGRLPGVGKVMEAKL-AALGIATVGELRAFAQAELEQRFGRWGRRLH 230
Query: 188 SVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLR-GRT 246
+ G+ R IS+E TF L + +A A Q E R RT
Sbjct: 231 ELSRGVDEHPVQPERPTLQISAEDTFEHDLLLEELEPHIRRLAAKAWAAYQHEHARVART 290
Query: 247 LTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELPVS--LRLIGLRVTQF-N 302
+ LKLKTA F TR++T + S+ ++ A L + E P RL G+ + F N
Sbjct: 291 VVLKLKTADFHTLTRSLTPVQRPRSAAELADIACALRERVERPADSRYRLAGVGLAGFVN 350
Query: 303 EDKVRAPSD 311
D +A +D
Sbjct: 351 GDSYQAQAD 359
>gi|332530928|ref|ZP_08406852.1| DNA-directed DNA polymerase [Hylemonella gracilis ATCC 19624]
gi|332039616|gb|EGI76018.1| DNA-directed DNA polymerase [Hylemonella gracilis ATCC 19624]
Length = 404
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 107/299 (35%), Positives = 155/299 (51%), Gaps = 13/299 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGV +AM A KLCP+ I +P DF +Y YS ++V + P +DE Y+
Sbjct: 105 ARQFGVGSAMGLMKAAKLCPQAILLPVDFDEYRRYSRRFKEVILEIAPVMEDRGVDEVYI 164
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLP 126
D TEV + SG +A ++ S++E GLTCS GVAPN+LLAK+ S+ NKP G V
Sbjct: 165 DFTEVPGGQRESGRTLARLIQKSIFEATGLTCSIGVAPNKLLAKMASEFNKPKGISIVQV 224
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEML--QKGSLLCAVFSHSTAD 184
+D + I LP RKI GIG T+ L+ I+T E+ KG L+ F S
Sbjct: 225 SD---LQEKIWPLPCRKINGIGPKTDEKLQ-ALSISTIGELAARSKGELV-ERFGRSYGA 279
Query: 185 FFLSVGLGLGS----TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKE 240
+ G T + + + ER DKA L + E ++AD+Q++
Sbjct: 280 WLHEAAWGRDERPVVTESEPVSVSRETTFERDLHAVRDKAELAAIFTSLCERVAADLQRK 339
Query: 241 GLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK-AELPVSLRLIGLRV 298
G GRT+ +KL+ A F+ TR TL + + ++ I A + LK +L RL+G+RV
Sbjct: 340 GYEGRTIGVKLRYADFKSVTRDQTLDFHTADAQAIRHAAGLCLKRVDLQRRFRLLGVRV 398
>gi|149277809|ref|ZP_01883949.1| putative DNA polymerase [Pedobacter sp. BAL39]
gi|149231497|gb|EDM36876.1| putative DNA polymerase [Pedobacter sp. BAL39]
Length = 365
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 112/303 (36%), Positives = 170/303 (56%), Gaps = 19/303 (6%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGV +AMP A +LCP LIFV F Y S R++F +Y SLDEAYL
Sbjct: 57 ARKFGVHSAMPSKRALQLCPHLIFVYPRFAAYKEVSRHIREIFRRYTDLIQPLSLDEAYL 116
Query: 68 DITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVL 125
D+TE + GI S I+IA E++ ++ +E LT SAGV+ N+ +AKV SD++KP+G F+
Sbjct: 117 DVTE--DKLGIGSAIDIAMEIKQAIKDELNLTASAGVSINKFVAKVASDMDKPDGLTFIG 174
Query: 126 PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTA 183
P+ + FI LP+ K G+GKVT ++ + G++ ++ L +G L+ +F S
Sbjct: 175 PSK---IERFIEQLPVEKFHGVGKVTAEKMK-IRGLHKGADLKKLTEGELV-HLFGKS-G 228
Query: 184 DFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLY---RKLAEIAEMLSADMQKE 240
FF + G+ + KSI +E TFS ED LL +L +IA + M++
Sbjct: 229 HFFYKIVRGIDHRPVQANQETKSIGAEDTFS--EDLELLTEMNEELCKIAGTVCNRMEQH 286
Query: 241 GLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAE--LPVSLRLIGLRV 298
L GRTLT+K+K + F+ TR+ + + I + I+ A LL A +RL+G+ +
Sbjct: 287 RLYGRTLTIKIKFSDFKQITRSRSFSEPIRELDMIISIAEALLVAADISGKKVRLLGISI 346
Query: 299 TQF 301
+ F
Sbjct: 347 SNF 349
>gi|417780225|ref|ZP_12427990.1| ImpB/MucB/SamB family protein [Leptospira weilii str. 2006001853]
gi|410779619|gb|EKR64232.1| ImpB/MucB/SamB family protein [Leptospira weilii str. 2006001853]
Length = 352
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 101/309 (32%), Positives = 170/309 (55%), Gaps = 22/309 (7%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR+AMP A +L P+ IFVP F Y S+ R++F +Y SLDE YL
Sbjct: 40 ARKFGVRSAMPCSKAAQLAPQAIFVPPRFKVYKEVSNRIREIFLEYTDRVEMLSLDEGYL 99
Query: 68 DITEVCRERGIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVL 125
D+T ++ I + IA+E+R+ +++ LT SAGV ++ +AK+ S+ NKPNG VL
Sbjct: 100 DVT--FNKKNIPFAVTIAKEIRSEIFKRTELTASAGVGNSKFIAKLASEKNKPNGLTVVL 157
Query: 126 PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH--STA 183
P+D V+ FI LP+ G+GKVT ++++ I T +++ K + + H
Sbjct: 158 PDD---VIAFIDPLPVSSFHGVGKVTAQKMKEL-EIYTGKDLRAKN--IDELIQHFGKMG 211
Query: 184 DFFLSVGLGLGSTNTPQARFRKSISSERTFSVTE-DKALLYRKLAEIAEMLSADMQKEGL 242
++ + G R RKS+ +E TF + D+ L ++L E+A + +++
Sbjct: 212 IYYYKISRGEDEREVESCRERKSLGAENTFDQDKIDREDLLQQLREVAVEVERRLKERDF 271
Query: 243 RGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV---------SLRL 293
G+TLTLK+K F++RTR+ TL + I S++++ A+ L + + ++RL
Sbjct: 272 AGKTLTLKIKFQDFKLRTRSKTLSEPIFSADELYSVAAELFEEFFEIKNGKQVSIKAIRL 331
Query: 294 IGLRVTQFN 302
+G+ ++ N
Sbjct: 332 LGINLSHPN 340
>gi|254372939|ref|ZP_04988428.1| hypothetical protein FTCG_00510 [Francisella tularensis subsp.
novicida GA99-3549]
gi|151570666|gb|EDN36320.1| hypothetical protein FTCG_00510 [Francisella novicida GA99-3549]
Length = 349
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 105/307 (34%), Positives = 168/307 (54%), Gaps = 25/307 (8%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR +GVR+AMP IA + CP LI + TDF KY S + R++F + SLDEAYL
Sbjct: 51 AREYGVRSAMPTAIAMQKCPNLILLNTDFAKYKAASSIIREIFHSFTDKVEPLSLDEAYL 110
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T+V + S IA+ ++ ++ + GLT S GVAPN+LLAK+ SDINKPNG +V+
Sbjct: 111 DVTDVTVYKN-SATLIAQAIKQEIFNKTGLTGSTGVAPNKLLAKIASDINKPNGLYVITP 169
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAV-----FSHST 182
++ V F+ +LP++K+ G+GKV++ L+ + + TC + LQ+ SL V F S
Sbjct: 170 EQ--VNDFVKNLPVKKLFGVGKVSQEKLKSM-NVETCSD-LQQLSLATLVDKFGKFGSSL 225
Query: 183 ADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALL---YRKLAEIAEMLSADMQK 239
++ G+ + R RKSIS E T+ ED L KL + + L++ +
Sbjct: 226 YNY----ARGIDNREVNPVRIRKSISVENTY--LEDLKTLEACLEKLPSLYDKLTSRITD 279
Query: 240 EGLRGRT-LTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL--KAELPVSLRLIGL 296
E + + +K F +T + K + ++++K+ + L K P+ L IG+
Sbjct: 280 EHYKSIIGIVVKFTDTKFN-KTSLTRVSKIL--DKEVIKNLIIELHQKQNHPIRLIGIGV 336
Query: 297 RVTQFNE 303
R+ + N+
Sbjct: 337 RLGEVND 343
>gi|255034132|ref|YP_003084753.1| DNA-directed DNA polymerase [Dyadobacter fermentans DSM 18053]
gi|254946888|gb|ACT91588.1| DNA-directed DNA polymerase [Dyadobacter fermentans DSM 18053]
Length = 372
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 112/324 (34%), Positives = 180/324 (55%), Gaps = 21/324 (6%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR+AMP A +LCP++IFV F Y S R++F +Y SLDEAYL
Sbjct: 57 ARKFGVRSAMPSRQAIQLCPQIIFVHPRFEVYKSVSRSIREIFSRYTDLIEPLSLDEAYL 116
Query: 68 DITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVL 125
D+TE + GI S +EIA++++ ++ EE LT SAGV+ N+ +AK+ SDI+KPNG F+
Sbjct: 117 DVTE--DKMGIGSAMEIAKQIKQAIQEELHLTASAGVSVNKFVAKIASDIHKPNGLTFIG 174
Query: 126 PNDRMAVMTFISSLPIRKIGGIGKVTEHILR--DVFGINTCEEMLQKGSLLCAVFSHSTA 183
P+ + F+ LP+ K G+GKVT ++ +F + +++ ++ L F T
Sbjct: 175 PS---KIERFMDQLPVEKFHGVGKVTADKMKGMQLFTGSDLKKLTEEE--LVNHFG-KTG 228
Query: 184 DFFLSVGLGLGSTNTPQARFRKSISSERTFS---VTEDKALLYRKLAEIAEMLSADMQKE 240
F+ + G+ R KS+ +E TF+ T D+ + ++L I ++ ++ +
Sbjct: 229 HFYYRIVRGIDDREVQTHRETKSLGAEDTFTYDLTTPDE--MNKELDRIGVTVANRLETK 286
Query: 241 GLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELP-VSLRLIGLRV 298
L+GRT+TLK+K + F TR + + + I A LL K +L ++RL+G+ +
Sbjct: 287 KLKGRTVTLKVKFSDFTQITRNHSFAHPVGDLDTITDTAKQLLEKLDLEGKAVRLLGISL 346
Query: 299 TQFNEDKV--RAPSDPTQKTLTNF 320
+ F+E +V R DP Q L F
Sbjct: 347 SNFHEPEVKYRKYKDPEQLELFPF 370
>gi|218459031|ref|ZP_03499122.1| DNA polymerase IV [Rhizobium etli Kim 5]
Length = 300
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 103/305 (33%), Positives = 160/305 (52%), Gaps = 16/305 (5%)
Query: 16 AMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRE 75
AMP A++ CP+LIFVP F Y S R++F +Y P SLDEAYLD+T+ +
Sbjct: 1 AMPSVTAKRKCPDLIFVPPRFDVYKAVSQQIREIFAEYTPLIEPLSLDEAYLDVTDNLKG 60
Query: 76 RGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMT 134
I+ EIA E+R + + GL SAG++ N+ LAK+ SD+NKPNGQ V+ P + A
Sbjct: 61 MEIA-TEIATEIRARIKQVTGLNASAGISYNKFLAKMASDLNKPNGQAVITPKNGPA--- 116
Query: 135 FISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH--STADFFLSVGLG 192
F+ +LP++K G+G T + + GI+T ++ KG L + H + +F + G
Sbjct: 117 FVEALPVKKFHGVGPATAEKMHRL-GIDTGADL--KGKTLEFLVEHFGKSGPYFHGIARG 173
Query: 193 LGSTNTPQARFRKSISSERTFSVTEDKALLYRK-LAEIAEMLSADMQKEGLRGRTLTLKL 251
+ R RKS+ +E TFS R+ L + E + + G+ +T+TLK+
Sbjct: 174 IDERQVKPDRVRKSVGAEDTFSKDLHAYEPAREGLQPLIEKVWGYCEANGIGAKTVTLKI 233
Query: 252 KTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFNEDKVRAP 309
K A F TR+ T+ + + D+ + S+LL P +RL+G+ ++ RAP
Sbjct: 234 KYADFNQITRSKTVPGLLPAITDLEEIISLLLAPIFPPPKGIRLLGITLSSLER---RAP 290
Query: 310 SDPTQ 314
Q
Sbjct: 291 GTEPQ 295
>gi|187931836|ref|YP_001891821.1| DNA polymerase IV [Francisella tularensis subsp. mediasiatica
FSC147]
gi|226738233|sp|B2SH34.1|DPO4_FRATM RecName: Full=DNA polymerase IV; Short=Pol IV
gi|187712745|gb|ACD31042.1| DNA-damage inducible protein P [Francisella tularensis subsp.
mediasiatica FSC147]
Length = 349
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 105/297 (35%), Positives = 165/297 (55%), Gaps = 17/297 (5%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR +GVR+AMP IA + CP LI + TDF KY S + R +F + SLDEAYL
Sbjct: 51 AREYGVRSAMPTAIAMQKCPNLILLNTDFAKYKAASAVIRDIFYSFTDKVEPLSLDEAYL 110
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T+V +E S IA+ ++ ++ + GLT SAGVAPN+LLAK+ SDINKPNG +V+
Sbjct: 111 DVTDV-KEYKNSATLIAQAIKQEIFNKTGLTGSAGVAPNKLLAKIASDINKPNGLYVVTP 169
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAV--FSHSTADF 185
+ V +F+ LP++K+ G+GKV++ L+ G+ TC + LQ+ SL V F +
Sbjct: 170 KQ--VDSFVKDLPVKKLFGVGKVSQEKLKST-GVETCLD-LQQLSLATLVDKFGKFGSSL 225
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALL---YRKLAEIAEMLSADMQKEGL 242
+ + G+ + R RKS+S E T+ ED L KL + + L++ + +E
Sbjct: 226 Y-NYARGIDNREVNPVRIRKSVSVENTY--LEDLKTLGACLEKLPSLYDKLTSRITEEHY 282
Query: 243 RGRT-LTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRV 298
+ + +K F +T + K + +++LK+ + L + +RLIG+ V
Sbjct: 283 KSIIGIVVKFTDTKFN-KTSLTRVAKIL--DKEMLKNLIIELHQKQNHPIRLIGIGV 336
>gi|300788116|ref|YP_003768407.1| DNA polymerase IV [Amycolatopsis mediterranei U32]
gi|384151547|ref|YP_005534363.1| DNA polymerase IV [Amycolatopsis mediterranei S699]
gi|399539999|ref|YP_006552661.1| DNA polymerase IV [Amycolatopsis mediterranei S699]
gi|299797630|gb|ADJ48005.1| DNA polymerase IV [Amycolatopsis mediterranei U32]
gi|340529701|gb|AEK44906.1| DNA polymerase IV [Amycolatopsis mediterranei S699]
gi|398320769|gb|AFO79716.1| DNA polymerase IV [Amycolatopsis mediterranei S699]
Length = 404
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 103/303 (33%), Positives = 154/303 (50%), Gaps = 16/303 (5%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR+AMP A++LCP LI +P Y S +F + P SLDEA+L
Sbjct: 63 ARKFGVRSAMPFSTAKRLCPHLINIPPTSGLYGEVSRGVMGIFRELTPLVEPLSLDEAFL 122
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D++ R G + + ++R+ V E G+TCS GVA + +AK+ S + KP+G V+P
Sbjct: 123 DVSGALRRLGATPASLGAQIRSRVAAEHGITCSVGVAKVKFVAKLASGMAKPDGMVVVPA 182
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQ------KGSLLCAVFSHS 181
+ F+ LP+ + G+G TE LR G+ T ++ K SL A H
Sbjct: 183 AE--TLAFLHPLPVSALWGVGARTEEHLRR-LGLATIADVAAFPPERLKKSLGTAAGEH- 238
Query: 182 TADFFLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKE 240
+ G+ + KSI +E TF V D+A L +L +AE + A ++
Sbjct: 239 ----LYRLAHGVDERSVVAESAEKSIGAEHTFDVDRHDRASLGLELLRLAERVGATLRGR 294
Query: 241 GLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV-SLRLIGLRVT 299
GLRGRT+++K++ A F TRA TL + +I A LL P ++RLIG+RV
Sbjct: 295 GLRGRTVSIKVRFADFRTITRARTLVSATDVAREIHAVAVALLAEHAPTGAVRLIGVRVE 354
Query: 300 QFN 302
+
Sbjct: 355 GLD 357
>gi|125625067|ref|YP_001033550.1| DNA polymerase IV [Lactococcus lactis subsp. cremoris MG1363]
gi|389855450|ref|YP_006357694.1| DNA polymerase IV [Lactococcus lactis subsp. cremoris NZ9000]
gi|189027668|sp|A2RNH9.1|DPO4_LACLM RecName: Full=DNA polymerase IV; Short=Pol IV
gi|124493875|emb|CAL98869.1| DNA polymerase IV [Lactococcus lactis subsp. cremoris MG1363]
gi|300071872|gb|ADJ61272.1| DNA polymerase IV [Lactococcus lactis subsp. cremoris NZ9000]
Length = 364
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 100/309 (32%), Positives = 167/309 (54%), Gaps = 22/309 (7%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FG+ +AM A LCP+ IF+ ++ KYT S R++F +Y N AAS+DEAYL
Sbjct: 61 ARAFGIHSAMSAKEAYDLCPQAIFISGNYEKYTKVSKQVREIFKRYTDNIEAASIDEAYL 120
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLP 126
D+TE + S I+IA+ ++ ++ E GLTCSAGV+ N+ LAK+ SD KP+G ++P
Sbjct: 121 DVTE-NKIGAQSAIKIAKLIQHDIFVELGLTCSAGVSYNKFLAKIASDYEKPHGLTLIMP 179
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADF 185
++ + F++ LP+ K G+GK T L G T ++ + + L F +
Sbjct: 180 DE---ALEFLAKLPVEKFHGVGKATVPKLH-ALGFFTGGDLQKADPVDLAERFGIYGWEL 235
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLY------RKLAEIAEMLSADMQK 239
F G+ ++ R RKS+ ERT+ LLY +L +I++ +S +++
Sbjct: 236 FQKAN-GIHNSKVKNHRERKSVGKERTYG-----KLLYLPDDIKAELIKISKQVSESLKR 289
Query: 240 EGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK---AELPVSLRLIGL 296
L+G + LKL+ + F T+ ++ + + S EDI + A + + + + +RL+G+
Sbjct: 290 HQLKGNIIILKLRYSDFTTLTKRKSMVENLDSPEDIAEAARQIFEEIDYDESLGVRLLGV 349
Query: 297 RVTQFNEDK 305
V+ F K
Sbjct: 350 TVSGFGVQK 358
>gi|357060135|ref|ZP_09120909.1| DNA polymerase IV [Alloprevotella rava F0323]
gi|355377025|gb|EHG24265.1| DNA polymerase IV [Alloprevotella rava F0323]
Length = 371
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 107/307 (34%), Positives = 164/307 (53%), Gaps = 12/307 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGV +A +A++LCP LI VP F KY + ++F Y S+DEA+L
Sbjct: 50 ARKFGVHSAQSVQVAKRLCPSLIIVPCHFEKYRAVNRQISEIFHDYTDQVEFLSVDEAFL 109
Query: 68 DITEVCRERGIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP 126
D+TE ++G+ ++IA E++ + EE LT SAGV+ +LLAK+ SD KP+G +
Sbjct: 110 DVTE--NKKGVELAVDIAREIKNRIQEELQLTASAGVSYCKLLAKIASDYRKPDGLCTIH 167
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL--LCAVFSHSTAD 184
D+ + FI+ LP+ K+ G+G T L + GI T E+ L++ SL L F
Sbjct: 168 PDK--ALRFIAHLPVTKLWGVGPKTAERLHQM-GIYTGEQ-LREYSLHSLTQAFG-KMGQ 222
Query: 185 FFLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLR 243
F + G+ R KS+ E TF + +A + +L + L ++K
Sbjct: 223 VFYNFARGIDERPVVTTREAKSVGCEHTFEKDLQTQAPVIVELYHVTLKLVERIKKHKFE 282
Query: 244 GRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELPVSLRLIGLRVTQFN 302
GRTLTLK+K A F TR++T Q+ + + + IL A LL K + +RL+GL V+
Sbjct: 283 GRTLTLKVKYADFTQITRSLTQQELLRTKKQILPLAKQLLAKTDTSRPIRLLGLSVSSPK 342
Query: 303 EDKVRAP 309
E+ V+ P
Sbjct: 343 EENVKKP 349
>gi|424835122|ref|ZP_18259792.1| DNA polymerase IV [Clostridium sporogenes PA 3679]
gi|365978249|gb|EHN14341.1| DNA polymerase IV [Clostridium sporogenes PA 3679]
Length = 349
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 99/303 (32%), Positives = 161/303 (53%), Gaps = 11/303 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++GV +AMP FIA+K CP I+VP +Y S+ K+ + P S+DEAYL
Sbjct: 48 ARKYGVHSAMPVFIAKKRCPFGIYVPGRHDRYKEVSNNIFKILFQITPIVEPVSIDEAYL 107
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
DI+ + E I++A+ ++ V +E GLT S G++ N+ LAK+ SD NKP+G ++
Sbjct: 108 DISHIKEE----PIKVAKHIKKRVKDEIGLTLSVGISYNKFLAKLASDWNKPDGIKIIKE 163
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCA-VFSHSTADFF 186
D + + L I KI GIGK + L ++ GI T E+M + C F + +
Sbjct: 164 D--MIPRILMPLSINKINGIGKKSVERLNNI-GIYTVEDMHKLSKDFCIEYFGKFGVEIY 220
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
+ G+ +R RKSI E T +K + + L + + +S ++ K G+
Sbjct: 221 ERI-RGIDYREVKVSRERKSIGKEITLKKDIINKEEMKKYLLDFSNKISTNLYKRNSAGK 279
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHA-SVLLKAELPVSLRLIGLRVTQFNED 304
T+T+K+KT++F+ TR+ T+ Y ++I A +L +RLIGL V+ E+
Sbjct: 280 TITVKIKTSNFKTHTRSKTVNNYTRDKDEIYSIACDILDNINFKEPIRLIGLTVSNLGEN 339
Query: 305 KVR 307
K++
Sbjct: 340 KIK 342
>gi|103486248|ref|YP_615809.1| DNA polymerase IV [Sphingopyxis alaskensis RB2256]
gi|98976325|gb|ABF52476.1| DNA-directed DNA polymerase [Sphingopyxis alaskensis RB2256]
Length = 376
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 106/299 (35%), Positives = 158/299 (52%), Gaps = 11/299 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFGVR+AMP A++ CP LIFVP F Y S R +F Y SLDEAYL
Sbjct: 64 ARRFGVRSAMPSITAKRQCPGLIFVPPRFEVYREVSHQIRAIFRDYADEVEPLSLDEAYL 123
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D++ G S A +R + EE GLT SAGV+ N+ +AK+ SD NKP+G V+P
Sbjct: 124 DVSADKAGLG-SATATARLIRRRIREETGLTASAGVSYNKFIAKLASDQNKPDGLTVIPP 182
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
+ A F+ +L IR+ GIG VT + + G+ + ++ K L A ++A++
Sbjct: 183 GKGA--AFVQTLSIRRFHGIGPVTAAKMEGL-GVFSGADLAAKDPLWLAEHFANSAEWLY 239
Query: 188 SVGLGLGSTNTPQARFRKSISSERTF---SVTEDKALLYRKLAEIAEMLSADMQKEGLRG 244
++ G+ R KS+ ERTF +T+ + + LA + ++ K+G RG
Sbjct: 240 NLARGIDHRRVKSNRPLKSLGGERTFFNDLITDTE--IREALAHVCTVVWDRAVKKGARG 297
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQF 301
RT+TLKL+ A F TRA ++ I +L +L LP +RL+G+ +++F
Sbjct: 298 RTVTLKLRYADFRTITRAKSVPSPIRDGASLLAVGEAILAPLLPSEQGIRLLGVTLSKF 356
>gi|198283550|ref|YP_002219871.1| DNA-directed DNA polymerase [Acidithiobacillus ferrooxidans ATCC
53993]
gi|198248071|gb|ACH83664.1| DNA-directed DNA polymerase [Acidithiobacillus ferrooxidans ATCC
53993]
Length = 374
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 108/298 (36%), Positives = 157/298 (52%), Gaps = 13/298 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFG+ +AM AR LCP+ IFV Y S + Y P SLDEA+L
Sbjct: 59 ARRFGIHSAMTAARARSLCPQAIFVRPRMEAYREASRQVMAILRSYTPLVEPLSLDEAFL 118
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T + GI +EIA E+ ++ E LT SAGV+ N+LLAK+ SD KP G FV+P
Sbjct: 119 DVTAATAD-GILAVEIAREILDRIHRETRLTASAGVSYNKLLAKLASDWRKPQGLFVIPP 177
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEE---MLQKGSLLCAVFSHSTAD 184
R + F++ LP+ K+ G+G T L GI+T + M Q+ + C F + A
Sbjct: 178 KRG--LDFLAPLPVGKLHGVGPATVKKL-SAMGIDTVSDLRAMAQERLIRC--FGKAGA- 231
Query: 185 FFLSVGLGLGSTNTPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLR 243
+F V G+ R RKS+ +ERTFS ED+ + L ++AE ++A +Q L
Sbjct: 232 WFYEVARGIDRRPVQPTRQRKSVGTERTFSENLEDRGTMLATLQQMAEQVAARLQALALA 291
Query: 244 GRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELP--VSLRLIGLRVT 299
G T+ +K + F TRA T + ++E I + LL +P S+RL+G+ V+
Sbjct: 292 GYTVNIKARFPDFATVTRAHTATEVTGNTEAIAALLTELLDRAVPQGASVRLLGITVS 349
>gi|197120569|ref|YP_002132520.1| DNA-directed DNA polymerase [Anaeromyxobacter sp. K]
gi|196170418|gb|ACG71391.1| DNA-directed DNA polymerase [Anaeromyxobacter sp. K]
Length = 418
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 104/307 (33%), Positives = 166/307 (54%), Gaps = 13/307 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVF---CKYDPNFMAASLDE 64
AR+FGVR+A+P AR+LCP+ +F+P F + YS+L+R+VF +Y P SLDE
Sbjct: 55 ARKFGVRSALPTARARRLCPDGVFLPPRFGR---YSELSRRVFDVYRRYTPLVEPLSLDE 111
Query: 65 AYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFV 124
A+LD++ R +G +IA ++ +V E GL SAGVA ++ AK+ +D+ KP+G V
Sbjct: 112 AFLDVS-ASRALHGTGPDIARAIKAAVRGECGLAVSAGVAEVKMAAKIATDLGKPDGLVV 170
Query: 125 LPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTA 183
+P V F++ LP+ ++ G+G+VTE LR + G+ T ++ + S L A + A
Sbjct: 171 VPAG--GVAAFLAPLPVGRLWGVGEVTEATLRRI-GVATIGDLARMPESALAAALGPTHA 227
Query: 184 DFFLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGL 242
++ G + KS+ +E TF + L R+L A + ++ GL
Sbjct: 228 RGLRALARGEDAREVVPDEEAKSVGAEDTFDHDLLGRPALERELLAQAGTVGRRLRAAGL 287
Query: 243 RGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELPVSLRLIGLRVTQF 301
G +TLK+K A F + TR VTL++ I + A L + +L +RL G+ V+ F
Sbjct: 288 AGHVVTLKVKYADFTLVTRRVTLERATDDDRAIFEAARAQLERVDLRRPVRLTGISVSGF 347
Query: 302 NEDKVRA 308
D+ R
Sbjct: 348 AGDEERG 354
>gi|117926811|ref|YP_867428.1| DNA-directed DNA polymerase [Magnetococcus marinus MC-1]
gi|117610567|gb|ABK46022.1| DNA-directed DNA polymerase [Magnetococcus marinus MC-1]
Length = 357
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 106/317 (33%), Positives = 169/317 (53%), Gaps = 16/317 (5%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG+ +AMP A+ LC +LI P Y S +F +Y SLDEAYL
Sbjct: 49 ARQFGIHSAMPMGRAKNLCDQLIIQPGRMQTYKNESHHIHAIFQRYTNLIEPLSLDEAYL 108
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+TE S +IA++++T+++EE LT SAG++ N++LAK+ S +NKPNG ++
Sbjct: 109 DVTENFLNLN-SATQIAQQIKTAIWEETHLTASAGISVNKMLAKIASAMNKPNGLTLIRP 167
Query: 128 DRMAVMTFISSLPIRKIGGIGKVT-EHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFF 186
++ A FI +LP+++ GIG+ T E +L+ GI T + Q + + F+
Sbjct: 168 EQAA--QFIDTLPVKRFHGIGQRTAERMLQ--LGIETGAHLRQWDRITLIKWFGKAGGFY 223
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFSVTED---KALLYRKLAEIAEMLSADMQKEGLR 243
+ + + R RKS+ +E TF +D K L+ + L I L + + LR
Sbjct: 224 HELAHNIDNRPVNPNRERKSVGAEHTFD--QDIFAKPLMQQALNTILAELWNRLDQLQLR 281
Query: 244 GRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV---SLRLIGLRVTQ 300
G TLTLK+K A F+ TRA T Q+ IS+ + + + LL+ E P+ +RL+G+ +
Sbjct: 282 GSTLTLKIKFADFQQITRAHTAQQIISTQAEAARIITALLQRE-PLYDRGVRLLGISMGH 340
Query: 301 FNEDKVRAPSDPTQKTL 317
+ A + P Q +L
Sbjct: 341 LCSSQT-ATTQPQQLSL 356
>gi|398356293|ref|YP_006529620.1| DNA polymerase IV [Sinorhizobium fredii USDA 257]
gi|399995501|ref|YP_006575739.1| hypothetical protein SFHH103_04725 [Sinorhizobium fredii HH103]
gi|365182348|emb|CCE99198.1| hypothetical protein SFHH103_04725 [Sinorhizobium fredii HH103]
gi|390131540|gb|AFL54920.1| DNA polymerase IV [Sinorhizobium fredii USDA 257]
Length = 363
Score = 149 bits (376), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 100/300 (33%), Positives = 155/300 (51%), Gaps = 13/300 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFGV +AMP A++ CP+L+FV F Y S R +F +Y P SLDEAYL
Sbjct: 56 ARRFGVHSAMPSVTAKRKCPDLVFVRPRFDVYKAVSLQIRAIFAEYTPMIEPLSLDEAYL 115
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-P 126
D+TE + I+ EIA E+R + + GL SAG++ N+ LAK+ SD+NKPNGQ V+ P
Sbjct: 116 DVTENLKGMEIA-TEIAAEIRAKIKQVTGLNASAGISYNKFLAKMASDLNKPNGQAVITP 174
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFF 186
+ A F+ LPI+K G+G T + + GI T ++ +K + +F
Sbjct: 175 KNGPA---FVEQLPIKKFHGVGPATAEKMHRL-GIETGADLKEKSFEFLVEHFGKSGPYF 230
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALL---YRKLAEIAEMLSADMQKEGLR 243
+ G+ + R RKS+ +E TFS ED L + E + + +
Sbjct: 231 YGIARGIDNREIKPNRVRKSVGAEDTFS--EDIHAFEPAREGLQPLMEKVWGYCEANEIG 288
Query: 244 GRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQF 301
+T+TLK+K A F TR+ T+ + + ++ + +LL P +RL+G+ ++
Sbjct: 289 AKTVTLKVKYADFTQITRSKTVAAPLQTISNLEEVVGLLLAPIFPPRKGIRLLGVSLSSL 348
>gi|418719523|ref|ZP_13278722.1| ImpB/MucB/SamB family protein [Leptospira borgpetersenii str. UI
09149]
gi|410743566|gb|EKQ92308.1| ImpB/MucB/SamB family protein [Leptospira borgpetersenii str. UI
09149]
Length = 330
Score = 149 bits (376), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 104/307 (33%), Positives = 165/307 (53%), Gaps = 18/307 (5%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG+R+AMP A +L P+ IFV F Y SD R++F +Y SLDE YL
Sbjct: 18 ARKFGIRSAMPCSKAAQLAPQAIFVFPRFEVYKEVSDRIREIFLEYTDRVEMLSLDEGYL 77
Query: 68 DITEVCRERGIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVL 125
D+T +R I + IA+E+R+ +++ LT SAGV ++ +AK+ S+ NKPNG VL
Sbjct: 78 DVT--FNKRNIPFAVTIAKEIRSEIFKRTELTASAGVGNSKFIAKLASEKNKPNGLTIVL 135
Query: 126 PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADF 185
P+D V+ FI LP+ G+GKVT ++++ GI+ +++ K +
Sbjct: 136 PDD---VIAFIDPLPVNSFHGVGKVTAQKMKEL-GIHIGKDLRAKNIDELVQHFGKMGIY 191
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSVTE-DKALLYRKLAEIAEMLSADMQKEGLRG 244
+ + G R RKS+ +E TF + D+ L ++L E+A + ++K G
Sbjct: 192 YYKISRGEDEREVNSCRERKSLGAENTFDQDKIDREDLLQQLREVAIEVERRLKKRNFAG 251
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHAS------VLLKAELPVS---LRLIG 295
+TLTLK+K F +RTR+ TL + I + ++I A+ K E VS +RL+G
Sbjct: 252 KTLTLKIKFQDFSLRTRSRTLSEPIFAVDEIYSVAAELFEEFFEFKNEKQVSVKAIRLLG 311
Query: 296 LRVTQFN 302
+ ++ N
Sbjct: 312 INLSHPN 318
>gi|387126480|ref|YP_006295085.1| DNA polymerase IV [Methylophaga sp. JAM1]
gi|386273542|gb|AFI83440.1| DNA polymerase IV [Methylophaga sp. JAM1]
Length = 362
Score = 149 bits (376), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 104/302 (34%), Positives = 165/302 (54%), Gaps = 16/302 (5%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG+ +AM A +LCPE IFV F Y S+ R++F +Y SLDEAYL
Sbjct: 51 ARKFGIHSAMASSRAYRLCPEAIFVRPRFDAYKEVSNQIREIFWRYASEVEPLSLDEAYL 110
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T G S IA+ +++ + E GLT SAGV+ N+ LAK+ SD++KP+G +++
Sbjct: 111 DVTYTESFNG-SATLIAKAIKSEILAETGLTASAGVSYNKFLAKIASDMDKPDGLYLIRP 169
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFF 186
++ F++ LPI K GIG TE ++++ G++T ++ QK + L F S ++
Sbjct: 170 EQG--QEFVNKLPIGKFHGIGPATEIKMKNL-GVHTGHDLRQKSLTELSERFGKS-GQYY 225
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL---LYRKLAEIAEMLSADMQKEGLR 243
++ + R RKS+ E TF+ ED L L ++AE + + K ++
Sbjct: 226 YNIARAIDDRPVRSQRIRKSLGKETTFA--EDILSIPDLNNILLDVAEQVLGSLSKHNMQ 283
Query: 244 GRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL---PVSLRLIGLRVTQ 300
GRT+T+K+K A F+ TRA TL I ++ +L + E PV RL+GL ++
Sbjct: 284 GRTVTVKVKYADFQQVTRAQTLDHSIGFADLQEWLPKLLARTEAGHKPV--RLVGLSLSG 341
Query: 301 FN 302
F+
Sbjct: 342 FD 343
>gi|417842070|ref|ZP_12488165.1| DNA polymerase IV [Haemophilus haemolyticus M19501]
gi|341947850|gb|EGT74491.1| DNA polymerase IV [Haemophilus haemolyticus M19501]
Length = 355
Score = 149 bits (376), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 111/308 (36%), Positives = 159/308 (51%), Gaps = 20/308 (6%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG+ +AMP A K CP LI VP + T Y S ++F +Y SLDEAYL
Sbjct: 51 ARKFGLHSAMPTAQAIKKCPNLILVPVNMTLYKQVSAQIHQIFHRYTDIIEPLSLDEAYL 110
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-P 126
D+T C++ S IA+E+R ++++E LT SAGVAP + LAK+ SD+NKPNGQFV+ P
Sbjct: 111 DVTH-CQKCSGSATWIAQEIRQAIFDELNLTASAGVAPLKFLAKIASDMNKPNGQFVIKP 169
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFF 186
N+ V FI +L + KI G+GKVT L D+ G+ TC ++ ++
Sbjct: 170 NE---VEEFIKTLSLNKIPGVGKVTSQRLLDM-GLETCADIQNFDQIVLLNQFGKAGKRI 225
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTF-----SVTEDKAL---LYRKLAEIAEMLSADMQ 238
G+ R RKS+ E+T +V + AL LY +L E +S ++
Sbjct: 226 WDFSHGIDDREVQAHRERKSVGVEQTLIENIHTVEQALALLNNLYDELIRRLERVSRNIP 285
Query: 239 KEGLRGRTLTLKLKTASFEVRTRAVT-LQKYISSSEDILKHASVLLKAELPVSLRLIGLR 297
R + +KLK F+V T T L + S + +L + K S+RLIGL
Sbjct: 286 LSSF--RKIGVKLKFEDFQVTTLEKTGLPLSLESFQQLLPQIFMRSKGR---SIRLIGLH 340
Query: 298 VTQFNEDK 305
V E+K
Sbjct: 341 VNLPEENK 348
>gi|402826938|ref|ZP_10876079.1| DNA-directed DNA polymerase [Sphingomonas sp. LH128]
gi|402259526|gb|EJU09748.1| DNA-directed DNA polymerase [Sphingomonas sp. LH128]
Length = 367
Score = 149 bits (376), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 103/309 (33%), Positives = 159/309 (51%), Gaps = 27/309 (8%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGV++A+P A + CPELIFVP F Y S +VF +Y SLDEAYL
Sbjct: 52 ARKFGVKSALPSVTALRRCPELIFVPPRFEVYKDVSRQIHEVFARYTDLIQPLSLDEAYL 111
Query: 68 DITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP 126
D+T + GI + A+ +R ++ +E GLT SAG++ N+ LAK+ SD KPNGQF +
Sbjct: 112 DVT--ANKSGIETAWRTAKAIRKAILDETGLTASAGISYNKFLAKLASDHRKPNGQFAVT 169
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFF 186
D ++ +LP+ + G+G VT ++ + GI T + K S+A+++
Sbjct: 170 PDMGE--AWVETLPVSRFHGVGPVTAEKMKRL-GIETGAHLRAKSLGFLQQNFGSSAEWY 226
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSA--DMQKEGLR- 243
++ G+ R RKS SE TF R L E E+ + M + R
Sbjct: 227 FAIARGVDDRPVNPNRVRKSCGSETTFD---------RDLTEPGEIEAGILRMADDVWRW 277
Query: 244 -------GRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLI 294
GRT+T+K+K F+ TR+ + I + E++ + A L++ LP +RL+
Sbjct: 278 CEARETFGRTVTVKIKYGDFQQITRSRSQPSVIVTQENLQRCAIDLVRTVLPPIKGIRLV 337
Query: 295 GLRVTQFNE 303
G+ V+ F E
Sbjct: 338 GVTVSNFGE 346
>gi|436836274|ref|YP_007321490.1| DNA-directed DNA polymerase [Fibrella aestuarina BUZ 2]
gi|384067687|emb|CCH00897.1| DNA-directed DNA polymerase [Fibrella aestuarina BUZ 2]
Length = 364
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 105/303 (34%), Positives = 160/303 (52%), Gaps = 19/303 (6%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FGVR+AMP AR+ CP+L+FV F Y S R +F +Y P SLDEAYL
Sbjct: 52 ARVFGVRSAMPSSTARRKCPDLLFVKPRFDVYKAVSQQIRAIFAEYTPLIEPLSLDEAYL 111
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+TE R S +IA E++ + E GLT SAGV+ N+ LAK+ SD NKP+G FV+
Sbjct: 112 DVTE-NRPGLASATQIAREIKVKIREATGLTASAGVSYNKFLAKLASDHNKPDGLFVIKP 170
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
+ A + F+ SL + + GIG T + + GI T ++ + F+
Sbjct: 171 E--AGLAFVESLRVGQFHGIGPATAGKMNQL-GIATGLDLRHQTEAFLVRHFGKMGHFYH 227
Query: 188 SVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSA---DMQKEGLR- 243
++ + + R RKS+ SE TF+ L+ + E+ + LS D+ ++ +R
Sbjct: 228 AIAHAIDNRPVRPDRERKSVGSETTFATD-----LF-EWDELTDGLSGPITDLWQDCVRL 281
Query: 244 ---GRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRV 298
GRTLTLK+K A F+ TR+ + I+S + LL+ +LP+ +RL+G+ +
Sbjct: 282 QTTGRTLTLKIKFADFQQITRSRSFGSPIASEAQLTYLTHELLRTQLPLPKGVRLLGVSL 341
Query: 299 TQF 301
+
Sbjct: 342 SNL 344
>gi|381184017|ref|ZP_09892694.1| DNA polymerase IV [Listeriaceae bacterium TTU M1-001]
gi|380316085|gb|EIA19527.1| DNA polymerase IV [Listeriaceae bacterium TTU M1-001]
Length = 356
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 104/298 (34%), Positives = 153/298 (51%), Gaps = 9/298 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGV +AMP A KLCPE IF+ + Y S R++F +Y SLDEAYL
Sbjct: 51 ARQFGVHSAMPTKQAAKLCPEGIFIHGNMEHYVTVSTQIREIFKRYTDIVEPLSLDEAYL 110
Query: 68 DITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP 126
D+TE ++G+ S IA E++ ++Y E GLT SAGV+ N+ +AK+ SD KP G V+P
Sbjct: 111 DVTE--NKKGMASATLIAREIQYAIYHELGLTSSAGVSYNKFIAKIASDYKKPAGLTVIP 168
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFF 186
++ TF+ S+PI K G+GKVT + + GI T +++ H +
Sbjct: 169 PEKAE--TFLESIPIDKFYGVGKVTSEKMHRL-GIKTGKDLKAWSEWDLIREFHKHGYYL 225
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
G + R RKS+ E TF D+ +L + L +E + + K G+
Sbjct: 226 YRHVRGRSNNIVNPHRDRKSVGKETTFERNVVDELVLEKSLMRFSEKIETRLLKIQKHGK 285
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS--LRLIGLRVTQF 301
T+ LKL+ + F T+ +TL Y+ + I + LL S +RLIGL VT
Sbjct: 286 TVVLKLRYSDFTTITKRMTLTNYVHDRQMIYEAGLALLNEVYNGSEAIRLIGLTVTNL 343
>gi|313888564|ref|ZP_07822230.1| ImpB/MucB/SamB family protein [Peptoniphilus harei ACS-146-V-Sch2b]
gi|312845450|gb|EFR32845.1| ImpB/MucB/SamB family protein [Peptoniphilus harei ACS-146-V-Sch2b]
Length = 346
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 100/305 (32%), Positives = 161/305 (52%), Gaps = 11/305 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++G+ +AMP ++A+ LC LI P +Y S +V Y S+DE+YL
Sbjct: 47 ARKYGIHSAMPMYMAKNLCDHLIIRPMRRERYLEKSREVFEVLKTYTDKIEKVSIDESYL 106
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
DI+ + + +I +L+ V+E+ GL+ S G++ N+ LAK+ SD NKP G ++
Sbjct: 107 DISGLGYDE-----DIVYDLQKKVFEKTGLSVSCGLSYNKFLAKLASDWNKPRGVKIIRE 161
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFF 186
+ + F L IRK+ GIG TE LR++ GINT E++ L +F S + +
Sbjct: 162 SDIPEILF--PLDIRKVHGIGNKTEKRLRNI-GINTVEDLYSLSYDFLVTMFKKSGEEIY 218
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRT 246
+ G+ + RKS+ +E TF VT + L L + ++ +S D+ + + G T
Sbjct: 219 KRIR-GIDNREVTPNNVRKSLGTESTFEVTSKREKLISHLRDFSKEVSEDLIVKEISGYT 277
Query: 247 LTLKLKTASFEVRTRAVTLQKYISSSEDIL-KHASVLLKAELPVSLRLIGLRVTQFNEDK 305
LTLK+K +F+V+TR+ T + I EDI K + +A LRLIG+ V+ +
Sbjct: 278 LTLKMKDENFKVKTRSRTYENAIYEEEDIFNKSMEIFEEAYEGDKLRLIGITVSNLVDLN 337
Query: 306 VRAPS 310
+R S
Sbjct: 338 IRQLS 342
>gi|319763873|ref|YP_004127810.1| DNA-directed DNA polymerase [Alicycliphilus denitrificans BC]
gi|330823863|ref|YP_004387166.1| DNA-directed DNA polymerase [Alicycliphilus denitrificans K601]
gi|317118434|gb|ADV00923.1| DNA-directed DNA polymerase [Alicycliphilus denitrificans BC]
gi|329309235|gb|AEB83650.1| DNA-directed DNA polymerase [Alicycliphilus denitrificans K601]
Length = 397
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 100/306 (32%), Positives = 156/306 (50%), Gaps = 13/306 (4%)
Query: 7 SARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAY 66
+AR+FGV +AM A +LCPE I +P DF +Y YS ++V P +DE Y
Sbjct: 80 AARQFGVGSAMGLMKAARLCPEAILLPVDFAEYRRYSRRFKEVILSIAPVMEDRGVDEVY 139
Query: 67 LDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVL 125
+D T+V + G +A ++ S+++ GLTCS GVAPN+L+AK+ S+ +KPNG V
Sbjct: 140 IDFTQVPGGQREGGRVLARLIQKSIHDATGLTCSIGVAPNKLIAKMASEFDKPNGISIVQ 199
Query: 126 PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTAD 184
P D + I L RKI GIG T L+ GI+T ++ + L A F ++
Sbjct: 200 PGD---LQARIWPLACRKINGIGPKTNDRLQ-AHGIHTIGDLAARPRDWLVAHFGKASGA 255
Query: 185 FFLSVGLGLGS----TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKE 240
+ G T + + + ER DKALL + + ++ D+ +
Sbjct: 256 WLHDAAWGRDERPVVTESEPVSMSRETTFERDLHAVSDKALLGEIFTTLCQQVAQDLAAK 315
Query: 241 GLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS--LRLIGLRV 298
G +GRT+ +KL+ A F+ TR T+ + + I + A LK +P++ LRL+G+RV
Sbjct: 316 GYKGRTIGIKLRYADFQTATRDQTIDQPTRDAATIRRAAGQCLK-RVPLTKRLRLLGVRV 374
Query: 299 TQFNED 304
+ D
Sbjct: 375 GKLQPD 380
>gi|379796249|ref|YP_005326248.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus MSHR1132]
gi|356873240|emb|CCE59579.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus MSHR1132]
Length = 356
Score = 149 bits (375), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 101/301 (33%), Positives = 161/301 (53%), Gaps = 11/301 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++GV +AMP A KLCP FV ++F Y S +F Y SLDEAYL
Sbjct: 50 ARKYGVHSAMPMSQAHKLCPNGYFVTSNFGAYRETSAQIMSIFRSYTDKVEPMSLDEAYL 109
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
DITE+ R + +IA+ +R + E+ LT SAGV+ N+ LAK+ S +NKP+G V+
Sbjct: 110 DITELVRP-DLPASKIAQYIRKDILEQTQLTASAGVSYNKFLAKLASGMNKPDGMTVI-- 166
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFF 186
D V + +L I G+GK ++ ++ D GI T +++ K L +F +
Sbjct: 167 DYRNVHDILMALDIGDFPGVGKASKKVMHD-HGIFTGKDLYNKSEFELIHLFGKRGRGLY 225
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRG 244
+ G+ + R RKS+ +ERTF+ V +D+ +L RK+ E++ + + K
Sbjct: 226 -NKARGIDHSEVKSTRVRKSVGTERTFATDVNDDEEIL-RKVWELSGKTAERLNKLQKSA 283
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRVTQFN 302
+T+T+K+KT FE ++ ++L+ +SS DI A +L + V +RLIG+ V
Sbjct: 284 KTVTVKIKTYQFETLSKQMSLRDSVSSENDIYNIAYLLYNDLKDPDVPIRLIGVTVGNLE 343
Query: 303 E 303
+
Sbjct: 344 Q 344
>gi|423349379|ref|ZP_17327035.1| hypothetical protein HMPREF9156_00573 [Scardovia wiggsiae F0424]
gi|393702927|gb|EJD65129.1| hypothetical protein HMPREF9156_00573 [Scardovia wiggsiae F0424]
Length = 466
Score = 149 bits (375), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 97/311 (31%), Positives = 161/311 (51%), Gaps = 20/311 (6%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGV +AMP A +LCP+ IF+P D Y S +F + S+DE Y+
Sbjct: 65 ARKFGVNSAMPAATAHRLCPQGIFLPVDMQYYRSMSSQVFGIFARITDRIEKVSVDECYM 124
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D++ + EIA +R +V G+TCS G+A N+L+AK+ S KP+G ++P
Sbjct: 125 DVSGALLQWK-DPREIAAWIRQTVKRRIGVTCSVGIASNKLIAKLASTNAKPDGMLMIPQ 183
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADF 185
R A FI +PIR I GIG TE L +GI+T +++ + SL A+ S + A +
Sbjct: 184 SRQA--EFIQMMPIRAIPGIGPSTERAL-SAWGISTVKQLADMSISSLTSALRSAAHARY 240
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEI-AEMLSADMQKEGLRG 244
GLGS+ + KSI +ERTF+ + L L + +++ ++++ L
Sbjct: 241 LYQAARGLGSSGVVVSAAEKSIGAERTFAEDTNSWLKISGLLRWCCDDVASTLRRKKLYA 300
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK-------------AELPVSL 291
RT+T+KL+ + ++++T+ + ++S+ I + LL AE+P +
Sbjct: 301 RTVTVKLRLSDLSHISKSLTVTQPMNSAAQIYPISRQLLARLLKMQQPEKGKDAEVPRLI 360
Query: 292 RLIGLRVTQFN 302
RL G+ + F+
Sbjct: 361 RLAGVSTSHFS 371
>gi|146092007|ref|XP_001470182.1| putative DNA polymerase kappa [Leishmania infantum JPCM5]
gi|134084976|emb|CAM69374.1| putative DNA polymerase kappa [Leishmania infantum JPCM5]
Length = 753
Score = 149 bits (375), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 117/381 (30%), Positives = 179/381 (46%), Gaps = 70/381 (18%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEA-- 65
ARRFGV++ MPGFI +LCP+L+ VPTDF S + V +YD + +DE
Sbjct: 273 ARRFGVQSGMPGFIGMRLCPQLVIVPTDFAACRAESAKFKAVVREYDSDAQLLGMDEVMM 332
Query: 66 ---------YLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDI 116
++D+T ++ + EE R + E GLT SAG+AP LAK+ S+
Sbjct: 333 CLDDYLAHHHMDVTTHAGRFDVAE-RVIEECRRRIAEATGLTVSAGIAPTPTLAKMASNY 391
Query: 117 NKPNGQFVLP-NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLC 175
KPNGQF + R AVM +++S+P+R++ GIGK E +L + GI+T E+ ++ L
Sbjct: 392 KKPNGQFAVRLFSREAVMNYLASIPVRQVPGIGKSRESVLAGL-GIHTLGEVYEQRHRLF 450
Query: 176 AVFSHSTADFFLSVGLGLG------------STNTPQARF--------------RKSISS 209
+ + T +F L+ +G+G S T + RKS+
Sbjct: 451 YILTRKTYEFLLASSIGIGGMYDSLEAAPSSSAGTTNGKTVAAVDGGSNEDDWGRKSVGH 510
Query: 210 ERTFSVTEDK----ALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTL 265
ERTF ++ A+ Y+ L E L+ +EGL + LKLK SF V+ + +L
Sbjct: 511 ERTFYKLTNRMALQAIAYKNLRRSHETLA----EEGLLCSQVVLKLKHRSFHVKQHSKSL 566
Query: 266 QKYISSSEDILKHASVLLKAELPV-----SLRLIGLRVTQFNED--------------KV 306
Y E + + LL +PV RL+G+R+ + K
Sbjct: 567 NVYTDDHEVLRRALDELL---MPVVDDFAEFRLLGVRLEKLRRRPRSDGTGGATTLTVKS 623
Query: 307 RAPSDPTQKTLTNFMTSGHAS 327
A ++ Q TL++F T AS
Sbjct: 624 AAEAESNQLTLSHFFTRQLAS 644
>gi|421093754|ref|ZP_15554478.1| ImpB/MucB/SamB family protein [Leptospira borgpetersenii str.
200801926]
gi|410363737|gb|EKP14766.1| ImpB/MucB/SamB family protein [Leptospira borgpetersenii str.
200801926]
Length = 330
Score = 149 bits (375), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 104/307 (33%), Positives = 164/307 (53%), Gaps = 18/307 (5%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG+R+AMP A +L P+ IFV F Y SD R++F +Y SLDE YL
Sbjct: 18 ARKFGIRSAMPCSKAAQLAPQAIFVFPRFEVYKEVSDRIREIFLEYTDRVEMLSLDEGYL 77
Query: 68 DITEVCRERGIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVL 125
D+T +R I + IA+E+R +++ LT SAGV ++ +AK+ S+ NKPNG VL
Sbjct: 78 DVT--FNKRNIPFAVTIAKEIRAEIFKRTELTASAGVGNSKFIAKLASEKNKPNGLTIVL 135
Query: 126 PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADF 185
P+D V+ FI LP+ G+GKVT ++++ GI+ +++ K +
Sbjct: 136 PDD---VIAFIDPLPVNSFHGVGKVTAQKMKEL-GIHIGKDLRAKNIDELVQHFGKMGIY 191
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSVTE-DKALLYRKLAEIAEMLSADMQKEGLRG 244
+ + G R RKS+ +E TF + D+ L ++L E+A + ++K G
Sbjct: 192 YYKISRGEDEREVNSCRERKSLGAENTFDQDKIDREDLLQQLREVAIEVERRLKKRNFAG 251
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHAS------VLLKAELPVS---LRLIG 295
+TLTLK+K F +RTR+ TL + I + ++I A+ K E VS +RL+G
Sbjct: 252 KTLTLKIKFQDFSLRTRSRTLSEPIFAVDEIYSVAAELFEEFFEFKNEKQVSVKAIRLLG 311
Query: 296 LRVTQFN 302
+ ++ N
Sbjct: 312 INLSHPN 318
>gi|424877038|ref|ZP_18300697.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Rhizobium leguminosarum bv. viciae WSM1455]
gi|393164641|gb|EJC64694.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Rhizobium leguminosarum bv. viciae WSM1455]
Length = 364
Score = 149 bits (375), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 105/303 (34%), Positives = 158/303 (52%), Gaps = 11/303 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FGV +AMP A++ CPELIFV F Y S R +F +Y P SLDEAYL
Sbjct: 56 ARTFGVHSAMPSVTAQRKCPELIFVKPRFDVYKAVSLQIRTIFAEYTPMIEPLSLDEAYL 115
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-P 126
D+TE + I+ EIA E+R + GLT SAG++ N+ LAK+ SD NKPNGQFV+ P
Sbjct: 116 DVTENLKGMEIA-TEIAAEIRARIKSTTGLTASAGISYNKFLAKMASDQNKPNGQFVITP 174
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADF 185
+ A F+ LP++K G+G T + + GI+T ++ +K L F S +
Sbjct: 175 KNGPA---FVERLPVKKFHGVGPATAEKMHRL-GIDTGADLKEKTLDFLVEHFGKS-GPY 229
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRK-LAEIAEMLSADMQKEGLRG 244
F + G+ + R RKS+ +E TFS R+ L + E + + +
Sbjct: 230 FYGIARGIDNRLVKPDRVRKSVGAEDTFSQDIHSFEPAREGLQPLIEKVWGYCEANEIAA 289
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFN 302
+T+TLK+K A F TR+ T + + D+ + +LL P +RL+G+ ++
Sbjct: 290 KTVTLKVKYADFSQITRSKTALAPLPAITDLDEVVGLLLAPLFPPRKGIRLLGVTLSSLE 349
Query: 303 EDK 305
+ +
Sbjct: 350 KRR 352
>gi|417903965|ref|ZP_12547796.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 21269]
gi|341848294|gb|EGS89459.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 21269]
Length = 356
Score = 149 bits (375), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 101/301 (33%), Positives = 162/301 (53%), Gaps = 11/301 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++GV +AMP A KLCP FV ++F Y S +F Y SLDEAYL
Sbjct: 50 ARKYGVHSAMPMSQAHKLCPNGYFVTSNFGAYRETSAQIMSIFRSYTDKVEPMSLDEAYL 109
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
DITE+ R + +IA+ +R + E+ LT SAGV+ N+ LAK+ S +NKP+G V+
Sbjct: 110 DITELVRP-DLPASKIAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGMTVI-- 166
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFF 186
D V + +L I G+GK ++ ++ D GI ++ +K L +F +
Sbjct: 167 DYQNVHDILMTLDIGDFPGVGKASKKVMHDK-GIFNGRDLYEKTEFELIRLFGKRGRGLY 225
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRG 244
+ G+ + +R RKS+ +ERTF+ V +D+ +L RK+ E++ + + K
Sbjct: 226 -NKARGIDHSEVKSSRVRKSVGTERTFATDVNDDEEIL-RKVWELSGKTAERLNKLQKSA 283
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRVTQFN 302
+T+T+K+KT FE ++ ++L+ +SS EDI A +L + V +RLIG+ V
Sbjct: 284 KTVTVKIKTYQFETLSKQMSLRDSVSSEEDIYNIAYLLYNDLKDPDVPIRLIGVTVGNLE 343
Query: 303 E 303
+
Sbjct: 344 Q 344
>gi|118497578|ref|YP_898628.1| DNA polymerase IV [Francisella novicida U112]
gi|195536274|ref|ZP_03079281.1| ImpB/MucB/SamB family protein [Francisella novicida FTE]
gi|226738234|sp|A0Q6K9.1|DPO4_FRATN RecName: Full=DNA polymerase IV; Short=Pol IV
gi|118423484|gb|ABK89874.1| DNA-damage inducible protein P [Francisella novicida U112]
gi|194372751|gb|EDX27462.1| ImpB/MucB/SamB family protein [Francisella tularensis subsp.
novicida FTE]
Length = 349
Score = 149 bits (375), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 94/238 (39%), Positives = 139/238 (58%), Gaps = 13/238 (5%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR +GVR+AMP IA + CP LI + TDF KY S + R +F + SLDEAYL
Sbjct: 51 AREYGVRSAMPTAIAMQKCPNLILLNTDFAKYKAASAVIRDIFYSFTDKVEPLSLDEAYL 110
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T+V +E S IA+ ++ ++ + GLT SAGVAPN+LLAK+ SDINKPNG +V+
Sbjct: 111 DVTDV-KEYKNSATLIAQAIKQEIFNKTGLTGSAGVAPNKLLAKIASDINKPNGLYVITP 169
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL--LCAVFSHSTADF 185
++ V +F+ LP++K+ G+GKV++ L+ + TC + LQ+ SL L F +
Sbjct: 170 EQ--VDSFVKDLPVKKLFGVGKVSQEKLK-TMNVETCLD-LQQLSLATLLDKFGKFGNNL 225
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALL---YRKLAEIAEMLSADMQKE 240
+ S G+ + R RKS+S E T+ ED L KL + + L++ M +E
Sbjct: 226 Y-SYARGIDNREVNPVRIRKSVSVENTY--LEDLKTLNACLEKLPSLYDKLTSRMTEE 280
>gi|349575619|ref|ZP_08887530.1| DNA-directed DNA polymerase IV [Neisseria shayeganii 871]
gi|348012887|gb|EGY51823.1| DNA-directed DNA polymerase IV [Neisseria shayeganii 871]
Length = 394
Score = 149 bits (375), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 98/261 (37%), Positives = 137/261 (52%), Gaps = 12/261 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR+AM AR+ CP+L+ +P DF +Y S +F ++ SLDEAYL
Sbjct: 81 ARKFGVRSAMALATARRRCPQLVCLPPDFARYRAVSAQIHAIFRRHTDIIEPLSLDEAYL 140
Query: 68 DITEVCRERGISGI----EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF 123
D++ R +SG +IA+ +R + E GLT SAGVAPN+L+AK+ SD KPNGQ
Sbjct: 141 DVS-----RPLSGHRYARDIAQAIRAEIRAETGLTASAGVAPNKLIAKIASDWRKPNGQT 195
Query: 124 VLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTA 183
V+ ++ V+ F+ LP KI G+GKVT + D GI T +M Q +
Sbjct: 196 VVAPEQ--VLRFLHPLPPAKIPGVGKVTAAKMAD-LGIRTIADMAQWPREHLVLHFGRYG 252
Query: 184 DFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLR 243
+ G+ R K +S E T + A L L IAE + + ++
Sbjct: 253 HRLYDLARGIDERPVRPEREYKQVSVEHTLAQDVPLAGLLPMLPGIAEEVWRQLARKRYA 312
Query: 244 GRTLTLKLKTASFEVRTRAVT 264
R LTLKLKTA F+V TR+ T
Sbjct: 313 ARRLTLKLKTADFQVLTRSAT 333
>gi|303237162|ref|ZP_07323732.1| putative DNA polymerase IV [Prevotella disiens FB035-09AN]
gi|302482549|gb|EFL45574.1| putative DNA polymerase IV [Prevotella disiens FB035-09AN]
Length = 361
Score = 149 bits (375), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 112/308 (36%), Positives = 163/308 (52%), Gaps = 21/308 (6%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++GVR+AMP A K CP L+ V F KY S ++F +Y SLDEA+L
Sbjct: 55 ARKYGVRSAMPLSQALKRCPNLLIVAPHFEKYKKVSRQVHEIFHRYTDLVEPISLDEAFL 114
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D++E R + ++A +++ ++ E GLT SAGV+ N+ LAK+ SD KPNG F++
Sbjct: 115 DVSE-NRANIVLAKDVALKIKEEIFAETGLTASAGVSYNKFLAKIASDYRKPNGIFIVHP 173
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFF 186
++ + FI+ LPI K G+G T + + GI T +++ Q + L VF A F+
Sbjct: 174 EKS--LNFIAELPIEKFWGVGHKTAETMHQM-GIFTGKQLRQVSLAHLTQVFGKMGAVFY 230
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFS---VTEDKAL--LYRKLAEIAEMLSADMQKEG 241
+ G+ R RKS+ E+TF E K L LY + E+ + LS K
Sbjct: 231 -NFSRGIDERPVEAYRERKSVGCEQTFMEDITGEIKILIELYHIVIELVKRLS----KSK 285
Query: 242 LRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK----AELPVSLRLIGLR 297
GRTLTLK+K ++ +R+VT + S +DIL A LLK P+ RLIGL
Sbjct: 286 FEGRTLTLKIKWSATSQISRSVTTDHILRSKDDILPLAKNLLKQTEYKHRPI--RLIGLS 343
Query: 298 VTQFNEDK 305
V+ E K
Sbjct: 344 VSGEMEGK 351
>gi|116873410|ref|YP_850191.1| DNA polymerase IV [Listeria welshimeri serovar 6b str. SLCC5334]
gi|123463973|sp|A0AK80.1|DPO4_LISW6 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|116742288|emb|CAK21412.1| DNA polymerase IV [Listeria welshimeri serovar 6b str. SLCC5334]
Length = 356
Score = 149 bits (375), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 105/301 (34%), Positives = 161/301 (53%), Gaps = 15/301 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGV +AMP A KLCP IF+ + Y S+ R++F +Y SLDEAYL
Sbjct: 51 ARKFGVHSAMPTRQAAKLCPNGIFIHGNMAHYVEVSNQIREIFSRYTDIIEPLSLDEAYL 110
Query: 68 DITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL- 125
D+TE ++G+ S +A +++ ++Y E GLT SAGV+ N+ +AK+ SD KP G V+
Sbjct: 111 DVTE--NKKGMKSATMVARDIQQTIYHELGLTASAGVSFNKFIAKIASDFKKPAGMTVVA 168
Query: 126 PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTA 183
P + A F+ +P+ K G+GKVT L + GI T ++ + L+ + H
Sbjct: 169 PEEAEA---FLEQIPVTKFYGVGKVTAEKLHRL-GIETGADLKKWSEWDLIRELHKHGYH 224
Query: 184 DFFLSVGLGLGSTNTPQARFRKSISSERTFSVTE-DKALLYRKLAEIAEMLSADMQKEGL 242
+ G N P R RKS+ E TF D +L + L + A+ + A + K
Sbjct: 225 LYRHVRGRSNNIVN-PH-RDRKSVGKETTFEFNVLDSRILEQSLMQFAKKVEARLIKLQK 282
Query: 243 RGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQ 300
G+T+ LKL+ + F T+ +TL +Y + + I + A++LL+ S+RLIGL VT
Sbjct: 283 HGKTVVLKLRYSDFTTITKRLTLNEYTNDANQIYQAAALLLRESYTGQDSIRLIGLTVTN 342
Query: 301 F 301
Sbjct: 343 L 343
>gi|392966693|ref|ZP_10332112.1| DNA-directed DNA polymerase [Fibrisoma limi BUZ 3]
gi|387845757|emb|CCH54158.1| DNA-directed DNA polymerase [Fibrisoma limi BUZ 3]
Length = 374
Score = 148 bits (374), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 107/315 (33%), Positives = 166/315 (52%), Gaps = 13/315 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++GVR+AM +A + CP LIFV F Y S R +F Y SLDEAYL
Sbjct: 66 ARQYGVRSAMSSLMAIRKCPHLIFVKPRFEVYKTVSAQIRTIFADYTDLIEPLSLDEAYL 125
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-P 126
D+TE ++ +IA+E++ + +E LT SAGV+ N+ LAK+ SD KP+G FV+ P
Sbjct: 126 DVTERA-SADLTATQIAQEIKERIRQETQLTASAGVSYNKFLAKLASDYRKPDGLFVIKP 184
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFF 186
+ +A F+ L + + G+G+VT + + GI T ++ Q+ +
Sbjct: 185 HQGLA---FVEQLNVGQFHGVGRVTAEKMNQL-GIFTGLDLRQQTEAFLTRHFGKVGHHY 240
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRG 244
S+ + R RKS+ SE TFS +TE+ LL L + + + A ++ G+ G
Sbjct: 241 YSIARAIDDRPVTANRVRKSVGSENTFSHDLTEESELL-TGLEPLTDDVWAYCERTGVYG 299
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFN 302
RT+TLK+K A F+ TR+ TL ++S + + + LL LP+ +RL+G+ ++ N
Sbjct: 300 RTVTLKVKYADFQQITRSRTLPTTVASRNILQQITADLLTGLLPLPKPVRLLGVSIS--N 357
Query: 303 EDKVRAPSDPTQKTL 317
D V S Q L
Sbjct: 358 LDTVTTTSANGQLAL 372
>gi|299144467|ref|ZP_07037547.1| DNA polymerase IV [Peptoniphilus sp. oral taxon 386 str. F0131]
gi|298518952|gb|EFI42691.1| DNA polymerase IV [Peptoniphilus sp. oral taxon 386 str. F0131]
Length = 347
Score = 148 bits (374), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 98/296 (33%), Positives = 156/296 (52%), Gaps = 10/296 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++ + +AMP F+A+KLCP LI P +Y SD K+ KY S+DE Y+
Sbjct: 48 ARKYKIHSAMPLFMAKKLCPHLIVAPMRRNRYIEKSDEVFKILSKYSDIIEKVSIDECYM 107
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
DI+E + ++I ++ V E GLT S G++ N+ LAK+ SD NKP+G ++
Sbjct: 108 DISENKNQ----PVDIVFSIKKKVKNETGLTVSVGLSYNKFLAKMASDWNKPDGMMIIS- 162
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHSTADFF 186
+ + +S + I KI G+G ++ LR++ GIN EE+L+ L +F + +
Sbjct: 163 -KSEIPQLLSKIDIGKIHGLGNKSQEKLRNL-GINKIEELLELDREFLFELFGKMGYEVY 220
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRT 246
+ G+ + R RKS+ ERTFS T + L L + L+ D++ L +T
Sbjct: 221 DRIR-GIDNRAVTPNRERKSLGIERTFSDTNNVKELISYLDRYSFELAEDLKNRNLGFKT 279
Query: 247 LTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELP-VSLRLIGLRVTQF 301
+TLK+KT +F+V T + T + IS EDI K+ + + LRLIG+ +
Sbjct: 280 ITLKIKTDNFKVSTYSKTYSRAISEYEDIFKNVKDIFEYNYKNQKLRLIGISASNL 335
>gi|315660146|ref|ZP_07913003.1| DNA-directed DNA polymerase IV [Staphylococcus lugdunensis M23590]
gi|315494827|gb|EFU83165.1| DNA-directed DNA polymerase IV [Staphylococcus lugdunensis M23590]
Length = 359
Score = 148 bits (374), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 103/297 (34%), Positives = 161/297 (54%), Gaps = 13/297 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++GV +AMP A KLCP+ +V + KY S+ +F Y SLDEAYL
Sbjct: 50 ARKYGVHSAMPMSQAHKLCPDGYYVQGQYEKYRTISNEIMSIFRSYTEAVEPMSLDEAYL 109
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
DIT + R +S +IA +R +YE+ LT SAGV+ N+ LAK+ S +NKPNG V+
Sbjct: 110 DITHLVRP-DLSASQIANYIRRDIYEKTHLTASAGVSYNKFLAKLASGMNKPNGMTVI-- 166
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFF 186
D V + +L I G+GK +E I+ GI +++ QK L +F +
Sbjct: 167 DYENVHKILMALDIGDFPGVGKASEKIMHK-HGIYNGQDLYQKDVFELVRLFGKRGRGLY 225
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRG 244
+ G+ + +R RKS+ +ERTF+ V +D +L +K+ E++ + + K
Sbjct: 226 -NKARGIDDSPVKSSRIRKSVGTERTFATDVNDDDEIL-QKMWELSGKTAERLNKLQKSA 283
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELP---VSLRLIGLRV 298
+T+T+K+KT FE ++ ++L+ I S DI + + +L AEL +RLIG+ V
Sbjct: 284 KTVTVKIKTFKFETLSKQMSLRDPIRSETDIY-NIAYMLYAELKDPETPIRLIGVTV 339
>gi|159039002|ref|YP_001538255.1| DNA-directed DNA polymerase [Salinispora arenicola CNS-205]
gi|157917837|gb|ABV99264.1| DNA-directed DNA polymerase [Salinispora arenicola CNS-205]
Length = 419
Score = 148 bits (374), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 101/293 (34%), Positives = 147/293 (50%), Gaps = 7/293 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARR+GVR+AMP AR LCP +F+P DFT YT S ++F P SLDEA+L
Sbjct: 69 ARRYGVRSAMPTARARALCPHAVFLPPDFTAYTTASRTVMQIFQDVTPLVEPLSLDEAFL 128
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+ R G IA +R V E GLTCS GVA ++ +AK+ S KP+G V+P
Sbjct: 129 DVAGAQRLFGQPS-AIARLIRERVATEVGLTCSVGVASSKFVAKLGSTRAKPDGMLVVPT 187
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFF 186
R V+ F+ LP+ + G+G+ + LR G+ T E+ Q +L + A
Sbjct: 188 AR--VLDFLHPLPVEALWGVGERSAETLRR-LGLTTVGELAQAPDGMLRRALGTAAARHL 244
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
+ G R KSI +E TF D+ + R L +AE + A +++ G GR
Sbjct: 245 RELAWGKDPRRVTSEREDKSIGAEVTFDADVTDRREIRRALLGLAEKVGARLRRSGQVGR 304
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV-SLRLIGLR 297
T+ LK++ A F +R+ +L ++ A L A P +RL+G+R
Sbjct: 305 TVALKVRLADFRTVSRSRSLDVPTDVGREMFDTAWALYTALDPGEPIRLVGVR 357
>gi|254514854|ref|ZP_05126915.1| DNA-directed DNA polymerase protein [gamma proteobacterium NOR5-3]
gi|219677097|gb|EED33462.1| DNA-directed DNA polymerase protein [gamma proteobacterium NOR5-3]
Length = 373
Score = 148 bits (374), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 111/325 (34%), Positives = 166/325 (51%), Gaps = 21/325 (6%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGV++AMPG AR+ CP+L+FV F Y S ++F +Y SLDEAYL
Sbjct: 55 ARKFGVKSAMPGVTARRRCPQLLFVKPRFDVYRSVSRQLHEIFARYTDLIEPLSLDEAYL 114
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T G S IAE +R + +E LT SAGV+ N+ +AKV SD NKP+G FV+
Sbjct: 115 DVTADTAGMG-SATAIAEAIRRDIRDELCLTASAGVSYNKFIAKVASDQNKPDGVFVVRP 173
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
A F+++LP R+ G+G T + GI++ ++ + +A +
Sbjct: 174 GEGA--DFVAALPARRFYGVGPRTAERM-STLGIHSGADIRAQSLHFLEQHFGKSAQYLY 230
Query: 188 SVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL---LYRKLAEIAEMLSADMQKEGLRG 244
G R RKSI ERT++ ED L L + L I +++ + + G
Sbjct: 231 RASRGEDYRPVRPDRQRKSIGGERTYA--EDLLLDEDLRKALEHIIDIVWERIDRHRSLG 288
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVT--- 299
RT+TLK+K A F+ TRA ++ + + D + + LL+A LPV +RL+GL ++
Sbjct: 289 RTVTLKVKYADFQQITRARSVSPPVETRADFERLSRELLEALLPVPKGVRLLGLTLSGLE 348
Query: 300 ------QFNEDKVRAPSDPTQKTLT 318
N V PS P Q++L
Sbjct: 349 APQAAGSLNPGVVAEPS-PVQESLA 372
>gi|418737843|ref|ZP_13294240.1| ImpB/MucB/SamB family protein [Leptospira borgpetersenii serovar
Castellonis str. 200801910]
gi|410747037|gb|EKQ99943.1| ImpB/MucB/SamB family protein [Leptospira borgpetersenii serovar
Castellonis str. 200801910]
Length = 330
Score = 148 bits (374), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 104/307 (33%), Positives = 164/307 (53%), Gaps = 18/307 (5%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG+R+AMP A +L P+ IFV F Y SD R++F +Y SLDE YL
Sbjct: 18 ARKFGIRSAMPCSKAAQLAPQAIFVFPRFEVYKEVSDRIREIFLEYTDRVEMLSLDEGYL 77
Query: 68 DITEVCRERGIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVL 125
D+T +R I + IA+E+R +++ LT SAGV ++ +AK+ S+ NKPNG VL
Sbjct: 78 DVT--FNKRNIPFAVTIAKEIRAEIFKRTELTASAGVGNSKFIAKLASEKNKPNGLTIVL 135
Query: 126 PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADF 185
P+D V+ FI LP+ G+GKVT ++++ GI+ +++ K +
Sbjct: 136 PDD---VIAFIDPLPVNSFHGVGKVTAQKMKEL-GIHIGKDLRAKNIGELVQHFGKMGIY 191
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSVTE-DKALLYRKLAEIAEMLSADMQKEGLRG 244
+ + G R RKS+ +E TF + D+ L ++L E+A + ++K G
Sbjct: 192 YYKISRGEDEREVNSCRERKSLGAENTFDQDKIDREDLLQQLREVAIEVERRLKKRNFAG 251
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHAS------VLLKAELPVS---LRLIG 295
+TLTLK+K F +RTR+ TL + I + ++I A+ K E VS +RL+G
Sbjct: 252 KTLTLKIKFQDFSLRTRSRTLSEPIFAVDEIYSVAAELFEEFFEFKNEKQVSVKAIRLLG 311
Query: 296 LRVTQFN 302
+ ++ N
Sbjct: 312 INLSHPN 318
>gi|385782159|ref|YP_005758330.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
11819-97]
gi|418572807|ref|ZP_13137011.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21333]
gi|364523148|gb|AEW65898.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
11819-97]
gi|371983970|gb|EHP01102.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21333]
Length = 356
Score = 148 bits (374), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 101/301 (33%), Positives = 162/301 (53%), Gaps = 11/301 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++GV +AMP A KLCP FV ++F Y S +F Y SLDEAYL
Sbjct: 50 ARKYGVHSAMPMSQAHKLCPNGYFVTSNFGAYRETSAQIMSIFRSYTDKVEPMSLDEAYL 109
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
DITE+ R + +IA+ +R + E+ LT SAGV+ N+ LAK+ S +NKP+G V+
Sbjct: 110 DITELVRP-DLPASKIAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGMTVI-- 166
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFF 186
D V + +L I G+GK ++ ++ D GI ++ +K L +F +
Sbjct: 167 DYQNVHDILMTLDIGDFPGVGKASKKVMHD-NGIFNGRDLYEKTEFELIRLFGKRGRGLY 225
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRG 244
+ G+ + +R RKS+ +ERTF+ V +D+ +L RK+ E++ + + K
Sbjct: 226 -NKARGIDHSEVKSSRVRKSVGTERTFATDVNDDEEIL-RKVWELSGKTAERLNKLQKSA 283
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRVTQFN 302
+T+T+K+KT FE ++ ++L+ +SS EDI A +L + V +RLIG+ V
Sbjct: 284 KTVTVKIKTYQFETLSKQMSLRDSVSSEEDIYNIAYLLYNDLKDPDVPIRLIGVTVGNLE 343
Query: 303 E 303
+
Sbjct: 344 Q 344
>gi|347549369|ref|YP_004855697.1| putative DNA-damage-inducible protein dinP [Listeria ivanovii
subsp. ivanovii PAM 55]
gi|346982440|emb|CBW86436.1| Putative DNA-damage-inducible protein dinP (DNA polymerase IV (Pol
IV)) [Listeria ivanovii subsp. ivanovii PAM 55]
Length = 356
Score = 148 bits (374), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 106/299 (35%), Positives = 160/299 (53%), Gaps = 11/299 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGV +AMP A KLCP IF+ + + Y S R++F +Y SLDEAYL
Sbjct: 51 ARKFGVHSAMPTKQAVKLCPNGIFIHGNMSHYVEVSGQIREIFSRYTDIIEPLSLDEAYL 110
Query: 68 DITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP 126
D+TE ++G+ S IA +++ ++Y E GLT SAGV+ N+ +AK+ SD +KP G V+
Sbjct: 111 DVTE--NKKGMKSATLIARDIQQTIYRELGLTASAGVSFNKFIAKIASDFHKPAGITVVS 168
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFF 186
D F+ +P+ K G+GKVT L + GI T + L+K S + +
Sbjct: 169 PDEAE--AFLEKIPVTKFYGVGKVTAEKLHRL-GIETGAD-LKKWSEWDLIRELHKQGYH 224
Query: 187 LSVGLGLGSTNTPQA-RFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLRG 244
L + S N R RKS+ E TF D+ +L + L A+ + + K G
Sbjct: 225 LYRHVRGRSNNVVNPHRDRKSVGKETTFEFNILDERILEQNLMIFAKKVEERLTKLQKHG 284
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL--PVSLRLIGLRVTQF 301
+T+ LKL+ + F T+ +TL +YI ++ I + A++LL+ S+RLIGL VT
Sbjct: 285 KTIVLKLRYSDFTTVTKRLTLNEYIHDAKQIYQAAALLLRETYTGKESIRLIGLTVTNL 343
>gi|313674610|ref|YP_004052606.1| DNA-directed DNA polymerase [Marivirga tractuosa DSM 4126]
gi|312941308|gb|ADR20498.1| DNA-directed DNA polymerase [Marivirga tractuosa DSM 4126]
Length = 359
Score = 148 bits (374), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 105/305 (34%), Positives = 165/305 (54%), Gaps = 13/305 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++G+ +AMP +A C +L+FV F +Y S L R++F +Y SLDEAYL
Sbjct: 52 ARKYGIHSAMPSKLAASKCKDLVFVKPRFDRYRELSHLIREIFYRYTDLVEPLSLDEAYL 111
Query: 68 DITEVCRERGIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP 126
D+TE + GIS +IA E++ ++ E GLT SAGV+ N+ LAK+ SD KP+G F++
Sbjct: 112 DVTE--NKMGISTATDIAIEIKKAIKSEIGLTASAGVSINKFLAKIASDYRKPDGIFIIK 169
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH--STAD 184
+ V++FI LPI K G+GK T + + I T ++ K L + H
Sbjct: 170 PHQ--VLSFIEQLPIEKFFGVGKKTAEKMHRL-NIKTGADLQAKS--LKELVKHFGKQGR 224
Query: 185 FFLSVGLGLGSTNTPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLR 243
+F SV G R RKS+ +E TFS++ + K+ + L IAE ++
Sbjct: 225 YFYSVSRGEDYRKVNPNRIRKSVGAENTFSISLKTKSAILEALQPIAEKCWKRYKQSDAN 284
Query: 244 GRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKA-ELPVSLRLIGLRVTQFN 302
T+TLK+K F+ TR+ + ++ I S+ + L+ + EL S+RL+G ++ F
Sbjct: 285 AHTITLKVKFDDFKQITRSKSFEEAIYSAAIFDQGLESLMDSFELYQSVRLVGCSLSNFE 344
Query: 303 -EDKV 306
E+K+
Sbjct: 345 IEEKI 349
>gi|308447175|ref|XP_003087353.1| hypothetical protein CRE_25044 [Caenorhabditis remanei]
gi|308257152|gb|EFP01105.1| hypothetical protein CRE_25044 [Caenorhabditis remanei]
Length = 636
Score = 148 bits (374), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 105/311 (33%), Positives = 168/311 (54%), Gaps = 14/311 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFGVR+AMP A++LCP+LI +P +KY S +VF ++ P S+DEA+L
Sbjct: 61 ARRFGVRSAMPVGRAKQLCPQLILIPPVHSKYRDASRAVMRVFEEFTPLVEPLSIDEAFL 120
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+ + G EIA +LR V E+ GL S G+A + +AK+ S KP+G +P
Sbjct: 121 DVAGSLKLFG-EPTEIARQLRARVREQTGLPASVGLAGTKFIAKLASQRAKPDGILEIPP 179
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFF 186
R + F+ LP+ + G+GK T L+ I T E+ ++ L + ++A
Sbjct: 180 AR--TLEFLHPLPVEAMWGVGKATARSLQS-RAIRTIGELAREPLPSLERLVGRASALKL 236
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFSVTE-DKALLYRKLAEIAEMLSADMQKEGLRGR 245
++ G + R KSI E TF++ E D+A+L+R+L ++ + +++ G R
Sbjct: 237 HALANGRDARAVETERIEKSIGHEETFAIDETDRAVLHRELLRLSTRTAERLREHGAEAR 296
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSL---RLIGLRVTQFN 302
T+ +K++ +FE TR+ TL + ++++ I + AS LL+ L VSL RLIG+
Sbjct: 297 TIAIKVRWDTFETVTRSRTLSEATNATQRIYRTASNLLEG-LGVSLMAVRLIGV----LA 351
Query: 303 EDKVRAPSDPT 313
E + A SDP
Sbjct: 352 EQLIAAGSDPA 362
>gi|21283565|ref|NP_646653.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus MW2]
gi|49486714|ref|YP_043935.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus MSSA476]
gi|57652116|ref|YP_186780.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus COL]
gi|151222045|ref|YP_001332867.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus str. Newman]
gi|221141185|ref|ZP_03565678.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus str.
JKD6009]
gi|253729654|ref|ZP_04863819.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus
USA300_TCH959]
gi|258422972|ref|ZP_05685871.1| DNA-damage-inducible protein P [Staphylococcus aureus A9635]
gi|258451039|ref|ZP_05699075.1| ImpB/MucB/SamB family protein [Staphylococcus aureus A5948]
gi|262049939|ref|ZP_06022799.1| hypothetical protein SAD30_1409 [Staphylococcus aureus D30]
gi|262053189|ref|ZP_06025347.1| hypothetical protein SA930_1194 [Staphylococcus aureus 930918-3]
gi|282917242|ref|ZP_06324997.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus D139]
gi|282923234|ref|ZP_06330915.1| DNA polymerase IV [Staphylococcus aureus A9765]
gi|283771045|ref|ZP_06343936.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus H19]
gi|284024941|ref|ZP_06379339.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 132]
gi|294849444|ref|ZP_06790186.1| DNA polymerase IV [Staphylococcus aureus A9754]
gi|297208923|ref|ZP_06925327.1| DNA-directed DNA polymerase IV [Staphylococcus aureus subsp. aureus
ATCC 51811]
gi|300913020|ref|ZP_07130458.1| DNA-directed DNA polymerase IV [Staphylococcus aureus subsp. aureus
TCH70]
gi|304379081|ref|ZP_07361828.1| DNA-directed DNA polymerase IV [Staphylococcus aureus subsp. aureus
ATCC BAA-39]
gi|379015099|ref|YP_005291335.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus VC40]
gi|379021655|ref|YP_005298317.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus M013]
gi|384548185|ref|YP_005737438.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus ED133]
gi|384870436|ref|YP_005753150.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus T0131]
gi|387143483|ref|YP_005731876.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
TW20]
gi|387780958|ref|YP_005755756.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
LGA251]
gi|415689555|ref|ZP_11452840.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus CGS01]
gi|417649076|ref|ZP_12298882.1| putative DNA polymerase IV [Staphylococcus aureus subsp. aureus
21189]
gi|417654248|ref|ZP_12303972.1| putative DNA polymerase IV [Staphylococcus aureus subsp. aureus
21193]
gi|417797059|ref|ZP_12444259.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 21305]
gi|417890486|ref|ZP_12534561.1| putative DNA polymerase IV [Staphylococcus aureus subsp. aureus
21200]
gi|417897571|ref|ZP_12541501.1| putative DNA polymerase IV [Staphylococcus aureus subsp. aureus
21235]
gi|417902413|ref|ZP_12546279.1| putative DNA polymerase IV [Staphylococcus aureus subsp. aureus
21266]
gi|418278482|ref|ZP_12892363.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21178]
gi|418282422|ref|ZP_12895196.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21202]
gi|418286830|ref|ZP_12899468.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21209]
gi|418306652|ref|ZP_12918429.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21194]
gi|418316783|ref|ZP_12928216.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21340]
gi|418317606|ref|ZP_12929023.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21232]
gi|418319965|ref|ZP_12931331.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
VCU006]
gi|418561209|ref|ZP_13125706.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21252]
gi|418570061|ref|ZP_13134360.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21283]
gi|418579821|ref|ZP_13143912.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1114]
gi|418641460|ref|ZP_13203670.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-24]
gi|418648524|ref|ZP_13210566.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-88]
gi|418651462|ref|ZP_13213463.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-91]
gi|418659923|ref|ZP_13221575.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-111]
gi|418871769|ref|ZP_13426138.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-125]
gi|418875828|ref|ZP_13430080.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIGC93]
gi|418889716|ref|ZP_13443845.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1524]
gi|418904230|ref|ZP_13458269.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1770]
gi|418906834|ref|ZP_13460857.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIGC345D]
gi|418912523|ref|ZP_13466501.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG547]
gi|418926310|ref|ZP_13480207.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG2018]
gi|418929243|ref|ZP_13483128.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1612]
gi|418934888|ref|ZP_13488706.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIGC128]
gi|418949246|ref|ZP_13501503.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-157]
gi|418950965|ref|ZP_13503097.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-160]
gi|418955346|ref|ZP_13507288.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-189]
gi|419773959|ref|ZP_14299943.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
CO-23]
gi|424785854|ref|ZP_18212650.1| DNA polymerase IV [Staphylococcus aureus CN79]
gi|440708430|ref|ZP_20889095.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21282]
gi|443639343|ref|ZP_21123354.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21196]
gi|448741043|ref|ZP_21723015.1| DNA polymerase IV [Staphylococcus aureus KT/314250]
gi|448744750|ref|ZP_21726633.1| DNA polymerase IV [Staphylococcus aureus KT/Y21]
gi|22095607|sp|P58964.1|DPO4_STAAW RecName: Full=DNA polymerase IV; Short=Pol IV
gi|81649035|sp|Q6G838.1|DPO4_STAAS RecName: Full=DNA polymerase IV; Short=Pol IV
gi|81694161|sp|Q5HEM7.1|DPO4_STAAC RecName: Full=DNA polymerase IV; Short=Pol IV
gi|189044608|sp|A6QIC3.1|DPO4_STAAE RecName: Full=DNA polymerase IV; Short=Pol IV
gi|21205006|dbj|BAB95701.1| MW1836 [Staphylococcus aureus subsp. aureus MW2]
gi|49245157|emb|CAG43623.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
MSSA476]
gi|57286302|gb|AAW38396.1| DNA-damage-inducible protein P [Staphylococcus aureus subsp. aureus
COL]
gi|150374845|dbj|BAF68105.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus str. Newman]
gi|253726595|gb|EES95324.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus
USA300_TCH959]
gi|257846759|gb|EEV70774.1| DNA-damage-inducible protein P [Staphylococcus aureus A9635]
gi|257861281|gb|EEV84093.1| ImpB/MucB/SamB family protein [Staphylococcus aureus A5948]
gi|259158916|gb|EEW44002.1| hypothetical protein SA930_1194 [Staphylococcus aureus 930918-3]
gi|259161947|gb|EEW46529.1| hypothetical protein SAD30_1409 [Staphylococcus aureus D30]
gi|269941366|emb|CBI49763.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
TW20]
gi|282318869|gb|EFB49224.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus D139]
gi|282593145|gb|EFB98144.1| DNA polymerase IV [Staphylococcus aureus A9765]
gi|283459639|gb|EFC06730.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus H19]
gi|294823581|gb|EFG40008.1| DNA polymerase IV [Staphylococcus aureus A9754]
gi|296886413|gb|EFH25342.1| DNA-directed DNA polymerase IV [Staphylococcus aureus subsp. aureus
ATCC 51811]
gi|298695234|gb|ADI98456.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus ED133]
gi|300885798|gb|EFK81005.1| DNA-directed DNA polymerase IV [Staphylococcus aureus subsp. aureus
TCH70]
gi|304342316|gb|EFM08208.1| DNA-directed DNA polymerase IV [Staphylococcus aureus subsp. aureus
ATCC BAA-39]
gi|315196234|gb|EFU26589.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus CGS01]
gi|329314571|gb|AEB88984.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus T0131]
gi|329728616|gb|EGG65046.1| putative DNA polymerase IV [Staphylococcus aureus subsp. aureus
21189]
gi|329731471|gb|EGG67834.1| putative DNA polymerase IV [Staphylococcus aureus subsp. aureus
21193]
gi|334267648|gb|EGL86106.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 21305]
gi|341839478|gb|EGS81059.1| putative DNA polymerase IV [Staphylococcus aureus subsp. aureus
21235]
gi|341843119|gb|EGS84350.1| putative DNA polymerase IV [Staphylococcus aureus subsp. aureus
21266]
gi|341854960|gb|EGS95820.1| putative DNA polymerase IV [Staphylococcus aureus subsp. aureus
21200]
gi|344178060|emb|CCC88542.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
LGA251]
gi|359830964|gb|AEV78942.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus M013]
gi|365165527|gb|EHM57313.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21209]
gi|365170533|gb|EHM61531.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21202]
gi|365171887|gb|EHM62635.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21178]
gi|365228696|gb|EHM69875.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
VCU006]
gi|365240493|gb|EHM81267.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21340]
gi|365245156|gb|EHM85805.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21232]
gi|365246446|gb|EHM86998.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21194]
gi|371969684|gb|EHO87124.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21252]
gi|371985110|gb|EHP02198.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21283]
gi|374363796|gb|AEZ37901.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus VC40]
gi|375019260|gb|EHS12821.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-24]
gi|375025433|gb|EHS18837.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-91]
gi|375025967|gb|EHS19358.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-88]
gi|375033508|gb|EHS26693.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-111]
gi|375367884|gb|EHS71822.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-125]
gi|375369487|gb|EHS73365.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-157]
gi|375371200|gb|EHS74987.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-189]
gi|375374974|gb|EHS78585.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-160]
gi|377693700|gb|EHT18069.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1114]
gi|377721258|gb|EHT45396.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG547]
gi|377736928|gb|EHT60941.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1612]
gi|377740310|gb|EHT64307.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1770]
gi|377741462|gb|EHT65450.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG2018]
gi|377751523|gb|EHT75452.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1524]
gi|377762302|gb|EHT86169.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIGC345D]
gi|377769119|gb|EHT92896.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIGC93]
gi|377769370|gb|EHT93140.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIGC128]
gi|383972231|gb|EID88279.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
CO-23]
gi|421955823|gb|EKU08157.1| DNA polymerase IV [Staphylococcus aureus CN79]
gi|436504953|gb|ELP40917.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21282]
gi|443407154|gb|ELS65714.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21196]
gi|445548151|gb|ELY16405.1| DNA polymerase IV [Staphylococcus aureus KT/314250]
gi|445561950|gb|ELY18136.1| DNA polymerase IV [Staphylococcus aureus KT/Y21]
Length = 356
Score = 148 bits (374), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 101/301 (33%), Positives = 162/301 (53%), Gaps = 11/301 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++GV +AMP A KLCP FV ++F Y S +F Y SLDEAYL
Sbjct: 50 ARKYGVHSAMPMSQAHKLCPNGYFVTSNFGAYRETSAQIMSIFRSYTDKVEPMSLDEAYL 109
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
DITE+ R + +IA+ +R + E+ LT SAGV+ N+ LAK+ S +NKP+G V+
Sbjct: 110 DITELVRP-DLPASKIAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGMTVI-- 166
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFF 186
D V + +L I G+GK ++ ++ D GI ++ +K L +F +
Sbjct: 167 DYQNVHDILMTLDIGDFPGVGKASKKVMHDN-GIFNGRDLYEKTEFELIRLFGKRGRGLY 225
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRG 244
+ G+ + +R RKS+ +ERTF+ V +D+ +L RK+ E++ + + K
Sbjct: 226 -NKARGIDHSEVKSSRVRKSVGTERTFATDVNDDEEIL-RKVWELSGKTAERLNKLQKSA 283
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRVTQFN 302
+T+T+K+KT FE ++ ++L+ +SS EDI A +L + V +RLIG+ V
Sbjct: 284 KTVTVKIKTYQFETLSKQMSLRDSVSSEEDIYNIAYLLYNDLKDPDVPIRLIGVTVGNLE 343
Query: 303 E 303
+
Sbjct: 344 Q 344
>gi|386585380|ref|YP_006081782.1| DNA polymerase IV [Streptococcus suis D12]
gi|353737526|gb|AER18534.1| DNA polymerase IV [Streptococcus suis D12]
Length = 355
Score = 148 bits (374), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 102/312 (32%), Positives = 169/312 (54%), Gaps = 35/312 (11%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FG+ +AM A + CP+ IF+ ++ KY R++F +Y S+DEAYL
Sbjct: 61 ARAFGIHSAMSSKEAYERCPQAIFISGNYEKYQEVGRQVREIFHRYTDLVEPMSIDEAYL 120
Query: 68 DITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVL 125
D+TE + GI S ++IA+ ++ ++ E LT SAGV+ N+ LAK+ SD+ KP+G +L
Sbjct: 121 DVTE--NKLGISSAVKIAKLIQYDIWNELHLTASAGVSYNKFLAKIASDMEKPHGLTLIL 178
Query: 126 PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADF 185
P D + ++ +SLP+ K G+GK T L ++ G+ T +++L ++ D
Sbjct: 179 PEDAVGIL---ASLPVEKFHGVGKKTVERLHEM-GVYTGQDLLDVPEMVL-------IDR 227
Query: 186 FLSVGLGL-----GSTNTPQA--RFRKSISSERTFSVTEDKALLYR------KLAEIAEM 232
F G L G +N+P R RKSI ERT+ + LLYR +L + +
Sbjct: 228 FGRFGFDLYRKARGISNSPVKVDRVRKSIGKERTY-----RKLLYREEDVLKELISLCQR 282
Query: 233 LSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVS 290
++A +++ G +GRT+ LK++ F T+ +L+ Y +E I K L++ ++
Sbjct: 283 VAASLKRNGKKGRTIVLKVRYGDFSTLTKRHSLEVYTDQTETIEKEVRQLIEEIGKIEKG 342
Query: 291 LRLIGLRVTQFN 302
+RL+G+ VT F
Sbjct: 343 IRLLGVTVTNFQ 354
>gi|329119433|ref|ZP_08248118.1| DNA-directed DNA polymerase IV [Neisseria bacilliformis ATCC
BAA-1200]
gi|327464366|gb|EGF10666.1| DNA-directed DNA polymerase IV [Neisseria bacilliformis ATCC
BAA-1200]
Length = 358
Score = 148 bits (374), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 109/312 (34%), Positives = 162/312 (51%), Gaps = 25/312 (8%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFG+ +AM AR+ CP+ +FVP F Y S +F ++ SLDEAYL
Sbjct: 49 ARRFGLHSAMSAAAARRRCPQAVFVPPQFPLYRQVSQQIHGIFRRHTDLIEPLSLDEAYL 108
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T + +G +IA +R + E GLT SAG+APN+ LAK+ SD +KP+GQF LP
Sbjct: 109 DVTRNKQNHPYAG-DIARLIRADILAETGLTASAGIAPNKFLAKIASDWHKPDGQFSLPP 167
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADF 185
+ + F+++LP+ KI G+GKVT + + G+ T ++ +++G L A+
Sbjct: 168 QK--IEAFLAALPLGKIPGVGKVTLQKMHRL-GLKTAGDLRRMERGEL---------ANL 215
Query: 186 FLSVG-----LGLGSTNTP--QARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQ 238
F G L G N P R R IS+E T AL+ + L +A L A
Sbjct: 216 FGKWGYRLYDLARGIDNRPVKAERERVQISTEITLPEDLPLALILQHLPHLAADLWAQAA 275
Query: 239 KEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS---LRLIG 295
++ R R++TLKLKTA F TR++T + + +L A L P + RLIG
Sbjct: 276 RKQCRARSVTLKLKTARFRTLTRSLTYSSPLPDTTALLAAARELAARIPPDTEGGYRLIG 335
Query: 296 LRVTQFNEDKVR 307
L V+ + ++
Sbjct: 336 LGVSHLEQPGIQ 347
>gi|87162181|ref|YP_494528.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus
USA300_FPR3757]
gi|88195793|ref|YP_500603.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus NCTC 8325]
gi|161510117|ref|YP_001575776.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus
USA300_TCH1516]
gi|384862538|ref|YP_005745258.1| DNA-directed DNA polymerase IV [Staphylococcus aureus subsp. aureus
str. JKD6008]
gi|416840638|ref|ZP_11903844.1| DNA polymerase IV [Staphylococcus aureus O11]
gi|416846097|ref|ZP_11906377.1| DNA polymerase IV [Staphylococcus aureus O46]
gi|418988982|ref|ZP_13536651.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1835]
gi|418994606|ref|ZP_13542240.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG290]
gi|421150671|ref|ZP_15610326.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus str.
Newbould 305]
gi|422744266|ref|ZP_16798233.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus MRSA177]
gi|87128155|gb|ABD22669.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus
USA300_FPR3757]
gi|87203351|gb|ABD31161.1| ImpB/MucB/SamB family superfamily [Staphylococcus aureus subsp.
aureus NCTC 8325]
gi|160368926|gb|ABX29897.1| DNA-directed DNA polymerase IV [Staphylococcus aureus subsp. aureus
USA300_TCH1516]
gi|302751767|gb|ADL65944.1| DNA-directed DNA polymerase IV [Staphylococcus aureus subsp. aureus
str. JKD6008]
gi|320142358|gb|EFW34172.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus MRSA177]
gi|323439836|gb|EGA97552.1| DNA polymerase IV [Staphylococcus aureus O11]
gi|323442999|gb|EGB00620.1| DNA polymerase IV [Staphylococcus aureus O46]
gi|377716116|gb|EHT40300.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1835]
gi|377743219|gb|EHT67202.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG290]
gi|394329366|gb|EJE55475.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus str.
Newbould 305]
Length = 346
Score = 148 bits (374), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 101/301 (33%), Positives = 162/301 (53%), Gaps = 11/301 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++GV +AMP A KLCP FV ++F Y S +F Y SLDEAYL
Sbjct: 40 ARKYGVHSAMPMSQAHKLCPNGYFVTSNFGAYRETSAQIMSIFRSYTDKVEPMSLDEAYL 99
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
DITE+ R + +IA+ +R + E+ LT SAGV+ N+ LAK+ S +NKP+G V+
Sbjct: 100 DITELVRP-DLPASKIAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGMTVI-- 156
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFF 186
D V + +L I G+GK ++ ++ D GI ++ +K L +F +
Sbjct: 157 DYQNVHDILMTLDIGDFPGVGKASKKVMHDN-GIFNGRDLYEKTEFELIRLFGKRGRGLY 215
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRG 244
+ G+ + +R RKS+ +ERTF+ V +D+ +L RK+ E++ + + K
Sbjct: 216 -NKARGIDHSEVKSSRVRKSVGTERTFATDVNDDEEIL-RKVWELSGKTAERLNKLQKSA 273
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRVTQFN 302
+T+T+K+KT FE ++ ++L+ +SS EDI A +L + V +RLIG+ V
Sbjct: 274 KTVTVKIKTYQFETLSKQMSLRDSVSSEEDIYNIAYLLYNDLKDPDVPIRLIGVTVGNLE 333
Query: 303 E 303
+
Sbjct: 334 Q 334
>gi|385792952|ref|YP_005825928.1| hypothetical protein [Francisella cf. novicida Fx1]
gi|332678277|gb|AEE87406.1| DNA polymerase IV [Francisella cf. novicida Fx1]
Length = 350
Score = 148 bits (374), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 93/238 (39%), Positives = 139/238 (58%), Gaps = 13/238 (5%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR +G+R+AMP IA + CP LI + TDF KY S + R +F + SLDEAYL
Sbjct: 51 AREYGIRSAMPTAIAMQKCPNLILLNTDFAKYKAASAVIRDIFYSFTDKVEPLSLDEAYL 110
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T+V +E S IA+ ++ ++ + GLT SAGVAPN+LLAK+ SDINKPNG +V+
Sbjct: 111 DVTDV-KEYKNSATLIAQAIKQEIFNKTGLTGSAGVAPNKLLAKIASDINKPNGLYVITP 169
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL--LCAVFSHSTADF 185
++ V +F+ LP++K+ G+GKV++ L+ + TC + LQ+ SL L F +
Sbjct: 170 EQ--VDSFVKDLPVKKLFGVGKVSQEKLK-TMNVETCLD-LQQLSLATLLDKFGKFGNNL 225
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALL---YRKLAEIAEMLSADMQKE 240
+ S G+ + R RKS+S E T+ ED L KL + + L++ M +E
Sbjct: 226 Y-SYARGIDNREVNPVRIRKSVSVENTY--LEDLKTLNACLEKLPSLYDKLTSRMTEE 280
>gi|422747071|ref|ZP_16800996.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus MRSA131]
gi|320139725|gb|EFW31594.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus MRSA131]
Length = 346
Score = 148 bits (374), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 101/296 (34%), Positives = 161/296 (54%), Gaps = 11/296 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++GV +AMP A KLCP FV ++F Y S +F Y SLDEAYL
Sbjct: 40 ARKYGVHSAMPMSQAHKLCPNGYFVTSNFGAYRETSAQIMSIFRSYTDKVEPMSLDEAYL 99
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
DITE+ R + +IA+ +R + E+ LT SAGV+ N+ LAK+ S +NKP+G V+
Sbjct: 100 DITELVRP-DLPASKIAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGMTVI-- 156
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFF 186
D V + +L I G+GK ++ ++ D GI ++ +K L +F +
Sbjct: 157 DYQNVHDILMTLDIGDFPGVGKASKKVMHDN-GIFNGRDLYEKTEFELIRLFGKRGRGLY 215
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRG 244
+ G+ + +R RKS+ +ERTF+ V +D+ +L RK+ E++ + + K
Sbjct: 216 -NKARGIDHSEVKSSRVRKSVGTERTFATDVNDDEEIL-RKVWELSGKTAERLNKLQKSA 273
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRV 298
+T+T+K+KT FE ++ ++L+ +SS EDI A +L + V +RLIG+ V
Sbjct: 274 KTVTVKIKTYQFETLSKQMSLRDSVSSEEDIYNIAYLLYNDLKDPDVPIRLIGVTV 329
>gi|254374392|ref|ZP_04989874.1| hypothetical protein FTDG_00559 [Francisella novicida GA99-3548]
gi|151572112|gb|EDN37766.1| hypothetical protein FTDG_00559 [Francisella novicida GA99-3548]
Length = 349
Score = 148 bits (374), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 94/238 (39%), Positives = 138/238 (57%), Gaps = 13/238 (5%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR +GVR+AMP IA + CP LI + TDF KY S + R +F + SLDEAYL
Sbjct: 51 AREYGVRSAMPTAIAMQKCPNLILLNTDFAKYKAASTVIRDIFYSFTDKVEPLSLDEAYL 110
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T+V +E S IA+ ++ ++ + GLT SAGVAPN+LLAK+ SDINKPNG +V+
Sbjct: 111 DVTDV-KEYKNSATLIAQAIKQEIFNKTGLTGSAGVAPNKLLAKIASDINKPNGLYVITP 169
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL--LCAVFSHSTADF 185
+ V +F+ LP++K+ G+GKV++ L+ + TC + LQ+ SL L F +
Sbjct: 170 KQ--VDSFVKDLPVKKLFGVGKVSQEKLK-TMNVETCLD-LQQLSLATLLDKFGKFGNNL 225
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALL---YRKLAEIAEMLSADMQKE 240
+ S G+ + R RKS+S E T+ ED L KL + + L++ M +E
Sbjct: 226 Y-SYARGIDNREVNPVRIRKSVSVENTY--LEDLKTLNACLEKLPSLYDKLTSRMTEE 280
>gi|254229504|ref|ZP_04922918.1| ImpB/MucB/SamB family [Vibrio sp. Ex25]
gi|262393489|ref|YP_003285343.1| DNA polymerase IV [Vibrio sp. Ex25]
gi|151937969|gb|EDN56813.1| ImpB/MucB/SamB family [Vibrio sp. Ex25]
gi|262337083|gb|ACY50878.1| DNA polymerase IV [Vibrio sp. Ex25]
Length = 356
Score = 148 bits (374), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 115/315 (36%), Positives = 161/315 (51%), Gaps = 32/315 (10%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++GVR+AM A +LCP L+ VP Y S R +F +Y P SLDEAYL
Sbjct: 54 ARKYGVRSAMSTARALQLCPHLLVVPGRMHVYKQVSQQIRAIFERYTPIIEPLSLDEAYL 113
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T+ RG S IAE +R ++ E GLT SAG+AP + LAKV SD+NKPNGQFV+P
Sbjct: 114 DVTDSTACRG-SATLIAESIRRDIWNELGLTASAGIAPIKFLAKVASDMNKPNGQFVIPP 172
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFF 186
D+ V I +LP+ I G+GKV+ L G CE++ L F A +
Sbjct: 173 DK--VQEVIDTLPLENIPGVGKVSLEKLHQA-GFYRCEDIKNSDYRELLRQFGRQGASLW 229
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFS-----------VTEDKALLYRKLAEIAEMLSA 235
G+ + R RKS+ ERTFS V EDK LY +L + E S
Sbjct: 230 -QRSHGIDNREVVVERERKSVGVERTFSQNISSYDECWQVIEDK--LYPELEKRLERASP 286
Query: 236 D--MQKEGLRGRTLTLKLKTASFEVRT-RAVTLQKYISSSEDILKHASVLLKAELPVSLR 292
D + K+G +K+K A F++ T + Q + + +L+ +LK + +R
Sbjct: 287 DKSIIKQG-------IKVKFADFQLTTIEHIHPQLELEDFKILLRD---ILKRQNGREIR 336
Query: 293 LIGLRVTQFNEDKVR 307
L+GL V E++ R
Sbjct: 337 LLGLNVMLKPENQAR 351
>gi|384550711|ref|YP_005739963.1| DNA-directed DNA polymerase IV [Staphylococcus aureus subsp. aureus
JKD6159]
gi|302333560|gb|ADL23753.1| DNA-directed DNA polymerase IV [Staphylococcus aureus subsp. aureus
JKD6159]
Length = 356
Score = 148 bits (374), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 101/301 (33%), Positives = 161/301 (53%), Gaps = 11/301 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++GV +AMP A KLCP FV ++F Y S +F Y SLDEAYL
Sbjct: 50 ARKYGVHSAMPMSQAHKLCPNGYFVTSNFGAYRETSAQIMSIFRSYTDKVEPMSLDEAYL 109
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
DITE+ R + +IA+ +R + E+ LT SAGV+ N+ LAK+ S +NKP+G V+
Sbjct: 110 DITELVRP-DLPASKIAQFIRKDILEQTQLTASAGVSYNKFLAKLASGMNKPDGMTVI-- 166
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFF 186
D V + +L I G+GK ++ ++ D GI T +++ K L +F +
Sbjct: 167 DYRNVHDILMALDIGDFPGVGKASKKVMHD-HGIFTGKDLYNKSEFELIHLFGKRGRGLY 225
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRG 244
+ G+ + R RKS+ +ERTF+ V +D+ +L RK+ E++ + + K
Sbjct: 226 -NKARGIDHSEVKSTRVRKSVGTERTFATDVNDDEEIL-RKVWELSGKTAEGLNKLQKSA 283
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRVTQFN 302
+T+T+K+KT FE ++ ++L+ +SS DI A +L + V +RLIG+ V
Sbjct: 284 KTVTVKIKTHQFETLSKQMSLRDSVSSENDIYNIAYLLYNDLKDPDVPIRLIGVTVGNLE 343
Query: 303 E 303
+
Sbjct: 344 Q 344
>gi|418058732|ref|ZP_12696699.1| DNA polymerase IV [Methylobacterium extorquens DSM 13060]
gi|373567718|gb|EHP93680.1| DNA polymerase IV [Methylobacterium extorquens DSM 13060]
Length = 408
Score = 148 bits (373), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 112/325 (34%), Positives = 170/325 (52%), Gaps = 33/325 (10%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR+AM A++ CPEL+FV F Y S R +F ++ P SLDEAYL
Sbjct: 102 ARKFGVRSAMASVTAKRKCPELVFVKPRFEVYREVSMAIRAIFAEHTPIIEPLSLDEAYL 161
Query: 68 DITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP 126
D+TE +G+ + EIA E++T++ E LT SAGV+ + LAK+ SD KP+G FV+
Sbjct: 162 DVTENL--KGLETATEIAREIKTAIRERLNLTASAGVSYQKFLAKIASDYRKPDGLFVI- 218
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADF 185
RM F+ +LP+ + GIG TE + + GI T ++ K + L F S A +
Sbjct: 219 TPRMGP-EFVLTLPVGRFHGIGPATEAKMARL-GIATGADLKSKSLAFLQEHFGKSGA-Y 275
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEM----------LSA 235
F + G+ R RKS+ +E TF R LA I EM + +
Sbjct: 276 FHGIARGVDHRPVRPDRIRKSVGAENTFE---------RDLAGIEEMREHLQPIVDKVWS 326
Query: 236 DMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSL--RL 293
G+R RT+TLK+K + FE TR+ + + S +D+ A+ LL+ P+ L RL
Sbjct: 327 RCAATGVRCRTVTLKVKFSDFEQITRSRSTAVDVGSRDDLEGIAADLLRQLFPMRLGVRL 386
Query: 294 IGLRVTQFNEDKVRAPSDPTQKTLT 318
+G+ ++ + ++ +P Q +L
Sbjct: 387 LGVTMSGLDNER----EEPRQLSLA 407
>gi|359429948|ref|ZP_09220965.1| DNA polymerase IV [Acinetobacter sp. NBRC 100985]
gi|358234628|dbj|GAB02504.1| DNA polymerase IV [Acinetobacter sp. NBRC 100985]
Length = 355
Score = 148 bits (373), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 99/301 (32%), Positives = 156/301 (51%), Gaps = 11/301 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FG+R+AM A+KLCP+++ + F KY S ++F +Y SLDEAYL
Sbjct: 51 ARVFGLRSAMSMGQAKKLCPQVVVIEPHFEKYREVSAQIHQIFQQYTALIEPLSLDEAYL 110
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+TE ++ S E+A ++R ++ GLT SAGVAPN+ LAK+ SD NKPNG FV+
Sbjct: 111 DVTENLKDIP-SATEVATQIRADIFAVTGLTASAGVAPNKFLAKIASDWNKPNGLFVIKP 169
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM-LQKGSLLCAVFSHSTADFF 186
+ V+ FI L + KI G+GKVT+ L + ++T ++ L + ++L F +
Sbjct: 170 HQ--VLKFIQDLALNKIPGVGKVTQEKLNQL-NLHTLGDLQLIEENVLIHHFGKYGKQLY 226
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRT 246
L G+ R R+ IS E TF A ++E + + K+ L R
Sbjct: 227 L-YAQGIDHRPVKAERERQQISKEITFDDDYTLAQCQHAWQPLSEQVWRSLNKKQLTARG 285
Query: 247 LTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV----SLRLIGLRVTQFN 302
+ +KLK +F+V + + + + S D L+ + L E+ + RL+G+ V Q
Sbjct: 286 VNVKLKLKNFQVLQHSKSFKSPLQSQHD-LQQVVIQLLEEMRIDPDFQFRLVGVGVYQLQ 344
Query: 303 E 303
+
Sbjct: 345 Q 345
>gi|375266450|ref|YP_005023893.1| DNA polymerase IV [Vibrio sp. EJY3]
gi|369841770|gb|AEX22914.1| DNA polymerase IV [Vibrio sp. EJY3]
Length = 354
Score = 148 bits (373), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 115/315 (36%), Positives = 158/315 (50%), Gaps = 32/315 (10%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++GVR+AMP A +LCP L+ VP Y S R +F +Y P SLDEAYL
Sbjct: 52 ARKYGVRSAMPTARALQLCPNLVVVPGRMHVYKQVSQQIRAIFERYTPIIEPLSLDEAYL 111
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T+ G S IAE +R ++ E LT SAGVAP + LAKV SD+NKPNGQFV+P
Sbjct: 112 DVTDATACHG-SATLIAEAIRKDIWNELSLTASAGVAPIKFLAKVASDMNKPNGQFVIPP 170
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFF 186
D+ V + LP+ KI G+GKV+ L G CE++ L F A +
Sbjct: 171 DK--VQQVVDKLPLEKIPGVGKVSLEKLHQA-GFYLCEDIKNSDYRELLRQFGRQGASLW 227
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFS-----------VTEDKALLYRKLAEIAEMLSA 235
G+ R RKS+ ERTFS V E K LY +L + E S
Sbjct: 228 -KRSQGIDDREVVVERERKSVGVERTFSQNISTYDECWQVIESK--LYPELEKRLERASP 284
Query: 236 D--MQKEGLRGRTLTLKLKTASFEVRT-RAVTLQKYISSSEDILKHASVLLKAELPVSLR 292
D + K+G +K+K A F++ T + Q ++ + +LK +LK + +R
Sbjct: 285 DKSIIKQG-------IKVKFADFQLTTIEHIHPQLELNDFKTLLKD---ILKRQQGREIR 334
Query: 293 LIGLRVTQFNEDKVR 307
L+GL V E + R
Sbjct: 335 LLGLSVMLKPETQAR 349
>gi|94995023|ref|YP_603121.1| DNA polymerase IV [Streptococcus pyogenes MGAS10750]
gi|189044613|sp|Q1J509.1|DPO4_STRPF RecName: Full=DNA polymerase IV; Short=Pol IV
gi|94548531|gb|ABF38577.1| DNA polymerase IV [Streptococcus pyogenes MGAS10750]
Length = 364
Score = 148 bits (373), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 111/316 (35%), Positives = 174/316 (55%), Gaps = 36/316 (11%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++G+ +AM A + CP+ IF+ ++ KY D R++F +Y S+DEAY+
Sbjct: 61 ARKYGIHSAMSCKEAYERCPKAIFISGNYEKYRTVGDQIRRIFKRYTDVVEPMSIDEAYV 120
Query: 68 DITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVL 125
D+T + GI S ++IA+ ++ +++E GLTCSAGV+ N+ L K+ SD KP+G VL
Sbjct: 121 DVTN--NKLGIKSAVKIAKLIQHDMWKEVGLTCSAGVSYNKFLGKLASDFEKPHGLTLVL 178
Query: 126 PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADF 185
D + F++ LPI K G+GK + L D+ GI T +++L AV + D
Sbjct: 179 KED---ALCFLAKLPIEKFHGVGKKSVEKLHDM-GIYTGQDLL-------AVPEMTLIDH 227
Query: 186 FLSVGLGL-----GSTNTP--QARFRKSISSERTFSVTEDKALLYRKL---AEI---AEM 232
F G L G +N+P R RKSI SERT++ LLY++ AEI A+
Sbjct: 228 FGRFGFDLYRKARGISNSPVKSDRIRKSIGSERTYA-----KLLYQETDIKAEISKNAKR 282
Query: 233 LSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVS 290
++A +Q G+T+ LK++ A F T+ VTL + ++ I + A + +E P
Sbjct: 283 VAALLQDHKKLGKTIVLKVRYADFTTLTKRVTLPELTRNAAQIEQVAGDIFDSLSENPAG 342
Query: 291 LRLIGLRVTQFNEDKV 306
+RL+G+ +T EDKV
Sbjct: 343 IRLLGVTMTNL-EDKV 357
>gi|256829594|ref|YP_003158322.1| DNA-directed DNA polymerase [Desulfomicrobium baculatum DSM 4028]
gi|256578770|gb|ACU89906.1| DNA-directed DNA polymerase [Desulfomicrobium baculatum DSM 4028]
Length = 412
Score = 148 bits (373), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 106/308 (34%), Positives = 152/308 (49%), Gaps = 8/308 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++G+R+AMP A+KLCP +F+P ++Y S + P AS+DEAY
Sbjct: 57 ARKYGIRSAMPIVQAKKLCPHAVFLPGRMSRYREISVKIMNIMRALCPLVEQASVDEAYA 116
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLP 126
DI+ R G IA L+ + LTCS G+APN+ LAK+ SD NKP G F+ P
Sbjct: 117 DISGTRRIFGPPE-NIARRLKAEILAATNLTCSVGIAPNKFLAKIASDWNKPGGLTFIPP 175
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFF 186
D V F+ LP+ +I G+GK + LR + G+ T +L F
Sbjct: 176 AD---VPAFLRDLPLGRIPGVGKQFQEELRRI-GVTTIPHVLAHPRTYWNELMGKRGAFL 231
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
G+ + KS S+E T T D+ LL R L AE + +++ G +G
Sbjct: 232 HDRACGIDDSPVVPGSDPKSCSAENTLDRDTLDRTLLERWLLIQAERIGRELRGLGKKGL 291
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFNED 304
T+TLK+K F TR+ TL + + +I + A +LL AE LP +RLIG V+ F
Sbjct: 292 TVTLKIKFQDFSSITRSRTLARPTDITTEIFEAARMLLTAEKLPRPVRLIGTGVSNFRFV 351
Query: 305 KVRAPSDP 312
+ P P
Sbjct: 352 QAELPLMP 359
>gi|440735334|ref|ZP_20914941.1| DNA-directed DNA polymerase IV [Staphylococcus aureus subsp. aureus
DSM 20231]
gi|436430703|gb|ELP28061.1| DNA-directed DNA polymerase IV [Staphylococcus aureus subsp. aureus
DSM 20231]
Length = 356
Score = 148 bits (373), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 101/301 (33%), Positives = 162/301 (53%), Gaps = 11/301 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++GV +AMP A KLCP FV ++F Y S +F Y SLDEAYL
Sbjct: 50 ARKYGVHSAMPMSQAHKLCPNGYFVTSNFGAYRETSAQIMSIFRSYTDKVEPMSLDEAYL 109
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
DITE+ R + +IA+ +R + E+ LT SAGV+ N+ LAK+ S +NKP+G V+
Sbjct: 110 DITELVRP-DLPASKIAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGMTVI-- 166
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFF 186
D V + +L I G+GK ++ ++ D GI ++ +K L +F +
Sbjct: 167 DYQNVHDILMTLDIGDFPGVGKASKKVMHDN-GIFNGRDLYEKTEFELIRLFGKRGRGLY 225
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRG 244
+ G+ + +R RKS+ +ERTF+ V +D+ +L RK+ E++ + + K
Sbjct: 226 -NKARGIDHSEVKSSRVRKSVGTERTFATDVNDDEEIL-RKVWELSGETAERLNKLQKSA 283
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRVTQFN 302
+T+T+K+KT FE ++ ++L+ +SS EDI A +L + V +RLIG+ V
Sbjct: 284 KTVTVKIKTYQFETLSKQMSLRDSVSSEEDIYNIAYLLYNDLKDPDVPIRLIGVTVGNLE 343
Query: 303 E 303
+
Sbjct: 344 Q 344
>gi|190894484|ref|YP_001984777.1| DNA polymerase IV [Rhizobium etli CIAT 652]
gi|190700145|gb|ACE94227.1| DNA-directed DNA polymerase protein [Rhizobium etli CIAT 652]
Length = 362
Score = 148 bits (373), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 100/300 (33%), Positives = 158/300 (52%), Gaps = 13/300 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR +GV +AMP A++ CPELIFV F Y S R++F +Y SLDEAYL
Sbjct: 55 ARAYGVHSAMPSVTAKRKCPELIFVAPRFDVYKAVSQQIREIFAEYTAVIEPLSLDEAYL 114
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-P 126
D+T + I+ EIA E+R + + GL SAG++ N+ LAK+ SD+NKPNGQ V+ P
Sbjct: 115 DVTHNLKGMEIA-TEIALEIRAKIKQATGLNASAGISYNKFLAKMASDLNKPNGQAVITP 173
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH--STAD 184
+ A F+ +LP++K G+G T + + GI+T ++ KG L + H +
Sbjct: 174 KNGPA---FVEALPVKKFHGVGPATADKMHRL-GIDTGADL--KGKTLEFLVEHFGKSGP 227
Query: 185 FFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRK-LAEIAEMLSADMQKEGLR 243
+F + G+ R RKS+ +E TFS R+ L + E + + G+
Sbjct: 228 YFHGIARGIDERQVKPNRVRKSVGAEDTFSQDLHAYEPARQGLQPLIEKVWGYCEANGIG 287
Query: 244 GRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQF 301
+T+TLK+K A F TR+ T+ + ++ + S++L P +RL+G+ ++
Sbjct: 288 AKTVTLKVKYADFHQITRSKTVPTLLRGITELEEIISLMLAPIFPPRKGIRLLGITLSSL 347
>gi|208779376|ref|ZP_03246722.1| ImpB/MucB/SamB family protein [Francisella novicida FTG]
gi|208745176|gb|EDZ91474.1| ImpB/MucB/SamB family protein [Francisella novicida FTG]
Length = 349
Score = 148 bits (373), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 94/238 (39%), Positives = 138/238 (57%), Gaps = 13/238 (5%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR +GVR+AMP IA + CP LI + TDF KY S + R +F + SLDEAYL
Sbjct: 51 AREYGVRSAMPTAIAMQKCPNLILLNTDFAKYKAASTVIRDIFYSFTDKVEPLSLDEAYL 110
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T+V +E S IA+ ++ ++ + GLT SAGVAPN+LLAK+ SDINKPNG +V+
Sbjct: 111 DVTDV-KEYKNSATLIAQAIKQEIFNKTGLTGSAGVAPNKLLAKIASDINKPNGLYVITP 169
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL--LCAVFSHSTADF 185
+ V +F+ LP++K+ G+GKV++ L+ + TC + LQ+ SL L F +
Sbjct: 170 KQ--VDSFVKDLPVKKLFGVGKVSQEKLK-TMNVETCLD-LQQLSLATLLDKFGKFGNNL 225
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALL---YRKLAEIAEMLSADMQKE 240
+ S G+ + R RKS+S E T+ ED L KL + + L++ M +E
Sbjct: 226 Y-SYARGIDNREVNPVRIRKSVSVENTY--LEDLKTLNACLEKLPSLYDKLTSRMTEE 280
>gi|430761508|ref|YP_007217365.1| DNA polymerase IV [Thioalkalivibrio nitratireducens DSM 14787]
gi|430011132|gb|AGA33884.1| DNA polymerase IV [Thioalkalivibrio nitratireducens DSM 14787]
Length = 372
Score = 148 bits (373), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 98/310 (31%), Positives = 156/310 (50%), Gaps = 15/310 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR GV + M A +L P+ I +P DF Y YS L + P +DE Y+
Sbjct: 60 ARALGVHSGMGLMTAARLAPDAILLPADFDAYRRYSRLFKTAVAHIAPRIEDRGIDEIYI 119
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+TE+ + + +A E++ +V E GL+CS G+APN+LLAK+ SD++KP+G VL
Sbjct: 120 DLTEMSADT----LPLANEIKAAVREATGLSCSIGIAPNKLLAKIASDLDKPDGLTVLAP 175
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFF 186
+A ++ LP+ KI GIG L+ GI T ++ +LL F +
Sbjct: 176 SDLAARVWL--LPVNKINGIGPKAGDRLQG-LGIRTIGDLAGAAPALLERHFGARMGGWL 232
Query: 187 LSVGLGLG-----STNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEG 241
+ GL + + P++ R++ + ER +D+ALL L + E ++ D+ G
Sbjct: 233 IRAAHGLDEQPIVTESEPRSMTRET-TFERDLHPRQDRALLTAALTGLCERVAGDLAARG 291
Query: 242 LRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHA-SVLLKAELPVSLRLIGLRVTQ 300
RGRT+ +KL+ F TR VTL+ + +ED+L + L + L +RL+G+R
Sbjct: 292 YRGRTIGIKLRYHDFRTLTRDVTLRNPVCRAEDLLASSRECLRRVPLDRRIRLLGVRAGA 351
Query: 301 FNEDKVRAPS 310
D P+
Sbjct: 352 LVADSQEGPA 361
>gi|154340461|ref|XP_001566187.1| putative DNA polymerase kappa [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134063506|emb|CAM39687.1| putative DNA polymerase kappa [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 754
Score = 148 bits (373), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 122/379 (32%), Positives = 174/379 (45%), Gaps = 67/379 (17%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++GVR+ MPGFI +LCP+L+ VPTDF S + V YDP +DE +
Sbjct: 273 ARQYGVRSGMPGFIGMRLCPQLVIVPTDFAACRVESAKFKGVVRNYDPAAQVLGMDEIMM 332
Query: 68 DITEVCRERGISGI----------EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDIN 117
+ + + + I EE R V E GLT SAG+AP LAK+ SD
Sbjct: 333 RLDDYLAQHHMDATTHAERFDVAERIIEECRRRVAEVTGLTASAGIAPTPTLAKMASDYK 392
Query: 118 KPNGQF-VLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCA 176
KPNGQF V R AVM +++S+P+R++ GIGK E IL GI+T E+ Q+ L
Sbjct: 393 KPNGQFAVRLFSREAVMDYLASIPVRRVPGIGKSRESILAG-LGIHTLGEVYQQRHRLFY 451
Query: 177 VFSHSTADFFLSVGLGLG----------------STNTPQA---------RFRKSISSER 211
+ + T +F L+ +G+G +T T A RKS+ ER
Sbjct: 452 ILTRKTYEFLLASAMGVGGMYDSLEAAPPSSAGTTTKTVAALDGESNEDDWRRKSVGQER 511
Query: 212 TF----SVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQK 267
TF + E +A+ + L + E L A E L + LKLK SF V+ + +L
Sbjct: 512 TFYKLKNRMELQAIAHMNLRQSHETLVA----EDLLCSQVVLKLKHRSFHVKQHSKSLNL 567
Query: 268 YISSSEDILKHASVLLKAELPV-----SLRLIGLRVTQFNED--------------KVRA 308
Y ++D L LPV RL+G+R+ + K A
Sbjct: 568 Y---TDDYEVLRRALDDLLLPVVDDFAKFRLLGIRLEKLRRRPQNSGAGGAIILTVKSTA 624
Query: 309 PSDPTQKTLTNFMTSGHAS 327
++ TQ TL++F AS
Sbjct: 625 EAESTQPTLSHFFARQSAS 643
>gi|47096619|ref|ZP_00234207.1| DNA-damage-inducible protein P, putative [Listeria monocytogenes
str. 1/2a F6854]
gi|254912534|ref|ZP_05262546.1| conserved hypothetical protein [Listeria monocytogenes J2818]
gi|254936861|ref|ZP_05268558.1| DNA polymerase IV [Listeria monocytogenes F6900]
gi|386047627|ref|YP_005965959.1| DNA polymerase IV [Listeria monocytogenes J0161]
gi|47015004|gb|EAL05949.1| DNA-damage-inducible protein P, putative [Listeria monocytogenes
serotype 1/2a str. F6854]
gi|258609456|gb|EEW22064.1| DNA polymerase IV [Listeria monocytogenes F6900]
gi|293590519|gb|EFF98853.1| conserved hypothetical protein [Listeria monocytogenes J2818]
gi|345534618|gb|AEO04059.1| DNA polymerase IV [Listeria monocytogenes J0161]
Length = 356
Score = 148 bits (373), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 105/301 (34%), Positives = 160/301 (53%), Gaps = 15/301 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGV +AMP A KLCP IF+ + Y S+ R++F +Y SLDEAYL
Sbjct: 51 ARKFGVHSAMPTRQAAKLCPNGIFIHGNMAHYVEVSNQIREIFSRYTDIIEPLSLDEAYL 110
Query: 68 DITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVL 125
D+TE ++G+ S +A E++ ++Y+E GLT SAGV+ N+ +AK+ SD KP G V
Sbjct: 111 DVTE--NKKGMKSATMVAREIQQTIYQELGLTASAGVSFNKFIAKIASDFKKPAGITVVT 168
Query: 126 PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTA 183
P + A F+ +P+ K G+GKVT L + GI T ++ + L+ + H
Sbjct: 169 PEEAEA---FLEQIPVTKFYGVGKVTAEKLHRL-GIETGADLKKWSEWDLIRELHKHGYH 224
Query: 184 DFFLSVGLGLGSTNTPQARFRKSISSERTFSVTE-DKALLYRKLAEIAEMLSADMQKEGL 242
+ G N P R RKS+ E TF D +L + L + A+ + + K
Sbjct: 225 LYRHVRGRSNNIVN-PH-RDRKSVGKETTFEFNVLDSRVLEQSLMQFAKKVEERLIKLQK 282
Query: 243 RGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQ 300
G+T+ LKL+ + F T+ +TL +Y + + I + A++LL+ S+RLIGL VT
Sbjct: 283 HGKTVVLKLRYSDFTTITKRLTLNEYTNDANQIYQAAALLLRESYTGQDSIRLIGLTVTN 342
Query: 301 F 301
Sbjct: 343 L 343
>gi|47093298|ref|ZP_00231068.1| DNA-damage-inducible protein P, putative [Listeria monocytogenes
str. 4b H7858]
gi|226224573|ref|YP_002758680.1| DNA-damage-inducible protein dinP (DNA polymerase IV (Pol IV))
[Listeria monocytogenes serotype 4b str. CLIP 80459]
gi|254825535|ref|ZP_05230536.1| DNA polymerase IV [Listeria monocytogenes FSL J1-194]
gi|254931859|ref|ZP_05265218.1| DNA polymerase IV [Listeria monocytogenes HPB2262]
gi|254992047|ref|ZP_05274237.1| DNA polymerase IV [Listeria monocytogenes FSL J2-064]
gi|255522144|ref|ZP_05389381.1| DNA polymerase IV [Listeria monocytogenes FSL J1-175]
gi|300763720|ref|ZP_07073717.1| DNA-damage-inducible protein P [Listeria monocytogenes FSL N1-017]
gi|386732710|ref|YP_006206206.1| DNA polymerase IV [Listeria monocytogenes 07PF0776]
gi|404281580|ref|YP_006682478.1| DNA-damage-inducible DNA polymerase IV [Listeria monocytogenes
SLCC2755]
gi|404287398|ref|YP_006693984.1| DNA-damage-inducible DNA polymerase IV [Listeria monocytogenes
serotype 7 str. SLCC2482]
gi|405750322|ref|YP_006673788.1| DNA-damage-inducible DNA polymerase IV [Listeria monocytogenes ATCC
19117]
gi|405756128|ref|YP_006679592.1| DNA-damage-inducible DNA polymerase IV [Listeria monocytogenes
SLCC2540]
gi|406704753|ref|YP_006755107.1| DNA-damage-inducible DNA polymerase IV [Listeria monocytogenes
L312]
gi|424823729|ref|ZP_18248742.1| DNA polymerase IV [Listeria monocytogenes str. Scott A]
gi|259645684|sp|C1KWR9.1|DPO4_LISMC RecName: Full=DNA polymerase IV; Short=Pol IV
gi|47018318|gb|EAL09081.1| DNA-damage-inducible protein P, putative [Listeria monocytogenes
serotype 4b str. H7858]
gi|225877035|emb|CAS05744.1| Putative DNA-damage-inducible protein dinP (DNA polymerase IV (Pol
IV)) [Listeria monocytogenes serotype 4b str. CLIP
80459]
gi|293583411|gb|EFF95443.1| DNA polymerase IV [Listeria monocytogenes HPB2262]
gi|293594777|gb|EFG02538.1| DNA polymerase IV [Listeria monocytogenes FSL J1-194]
gi|300515456|gb|EFK42506.1| DNA-damage-inducible protein P [Listeria monocytogenes FSL N1-017]
gi|332312409|gb|EGJ25504.1| DNA polymerase IV [Listeria monocytogenes str. Scott A]
gi|384391468|gb|AFH80538.1| DNA polymerase IV [Listeria monocytogenes 07PF0776]
gi|404219522|emb|CBY70886.1| DNA-damage-inducible DNA polymerase IV [Listeria monocytogenes ATCC
19117]
gi|404225328|emb|CBY76690.1| DNA-damage-inducible DNA polymerase IV [Listeria monocytogenes
SLCC2540]
gi|404228215|emb|CBY49620.1| DNA-damage-inducible DNA polymerase IV [Listeria monocytogenes
SLCC2755]
gi|404246327|emb|CBY04552.1| DNA-damage-inducible DNA polymerase IV [Listeria monocytogenes
serotype 7 str. SLCC2482]
gi|406361783|emb|CBY68056.1| DNA-damage-inducible DNA polymerase IV [Listeria monocytogenes
L312]
gi|441471756|emb|CCQ21511.1| DNA polymerase IV [Listeria monocytogenes]
gi|441474889|emb|CCQ24643.1| DNA polymerase IV [Listeria monocytogenes N53-1]
Length = 356
Score = 148 bits (373), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 105/301 (34%), Positives = 160/301 (53%), Gaps = 15/301 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGV +AMP A KLCP IF+ + Y S+ R++F +Y SLDEAYL
Sbjct: 51 ARKFGVHSAMPTRQAAKLCPNGIFIHGNMAHYVEVSNQIREIFSRYTDIIEPLSLDEAYL 110
Query: 68 DITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVL 125
D+TE ++G+ S +A E++ ++Y+E GLT SAGV+ N+ +AK+ SD KP G V
Sbjct: 111 DVTE--NKKGMKSATMVAREIQQTIYQELGLTASAGVSFNKFIAKIASDFKKPAGITVVT 168
Query: 126 PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTA 183
P + A F+ +P+ K G+GKVT L + GI T ++ + L+ + H
Sbjct: 169 PEEAEA---FLEQIPVTKFYGVGKVTAEKLHRL-GIETGADLKKWSEWDLIRELHKHGYH 224
Query: 184 DFFLSVGLGLGSTNTPQARFRKSISSERTFSVTE-DKALLYRKLAEIAEMLSADMQKEGL 242
+ G N P R RKS+ E TF D +L + L + A+ + + K
Sbjct: 225 LYRHVRGRSNNIVN-PH-RDRKSVGKETTFEFNVLDSRVLEQSLMQFAKKVEERLIKLQK 282
Query: 243 RGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQ 300
G+T+ LKL+ + F T+ +TL +Y + + I + A++LL+ S+RLIGL VT
Sbjct: 283 HGKTVVLKLRYSDFTTITKRLTLNEYTNDASQIYQAAALLLRESYTGQDSIRLIGLTVTN 342
Query: 301 F 301
Sbjct: 343 L 343
>gi|21911131|ref|NP_665399.1| DNA polymerase IV [Streptococcus pyogenes MGAS315]
gi|28895184|ref|NP_801534.1| DNA polymerase IV [Streptococcus pyogenes SSI-1]
gi|341958651|sp|P0DA78.1|DPO4_STRP3 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|341958652|sp|P0DA79.1|DPO4_STRPQ RecName: Full=DNA polymerase IV; Short=Pol IV
gi|21905342|gb|AAM80202.1| putative DNA-damage-inducible protein P [Streptococcus pyogenes
MGAS315]
gi|28810429|dbj|BAC63367.1| putative DNA-damage-inducible protein P [Streptococcus pyogenes
SSI-1]
Length = 365
Score = 148 bits (373), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 112/316 (35%), Positives = 173/316 (54%), Gaps = 36/316 (11%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++G+ +AM A + CP+ IF+ ++ KY D R++F +Y S+DEAYL
Sbjct: 61 ARKYGIHSAMSSKEAYERCPKAIFISGNYEKYRTVGDQIRRIFKRYTDVVEPMSIDEAYL 120
Query: 68 DITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVL 125
D+T+ + GI S ++IA+ ++ +++E GLTCSAGV+ N+ LAK+ SD KP+G VL
Sbjct: 121 DVTD--NKLGIKSAVKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKPHGLTLVL 178
Query: 126 PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADF 185
D + F++ LPI K G+GK + L D+ GI T +++L AV + D
Sbjct: 179 KED---ALCFLAKLPIEKFHGVGKKSVEKLHDM-GIYTGQDLL-------AVPEMTLIDH 227
Query: 186 FLSVGLGL-----GSTNTP--QARFRKSISSERTFSVTEDKALLYRKL---AEI---AEM 232
F G L G +N+P R RKSI SERT++ LLY++ AEI A+
Sbjct: 228 FGRFGFDLYRKARGISNSPVKSDRIRKSIGSERTYA-----KLLYQETDIKAEISKNAKR 282
Query: 233 LSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKA--ELPVS 290
+ A +Q G+T+ LK++ A F T+ VTL + + I + A + E V
Sbjct: 283 VVALLQDHKKLGKTIVLKVRYADFITLTKRVTLPELTRDAAQIEQVAESIFDTLPEHTVG 342
Query: 291 LRLIGLRVTQFNEDKV 306
+RL+G+ +T EDK+
Sbjct: 343 IRLLGVTMTNL-EDKM 357
>gi|163790782|ref|ZP_02185208.1| DNA-damage-inducible protein P [Carnobacterium sp. AT7]
gi|159873962|gb|EDP68040.1| DNA-damage-inducible protein P [Carnobacterium sp. AT7]
Length = 377
Score = 148 bits (373), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 102/301 (33%), Positives = 160/301 (53%), Gaps = 13/301 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGV +AM A +LCP F+ + Y S R +F +Y SLDEAYL
Sbjct: 66 ARKFGVHSAMSAQKAFELCPHGNFISGHYELYREISKQVRAIFERYTDIIEPLSLDEAYL 125
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+TE ++ S I IA+ ++ +++E LT SAGV+ N+ +AK+ SD +KP G V+P
Sbjct: 126 DVTE-NKKNLTSAIYIAKLIQRDIWQEVRLTSSAGVSYNKFIAKLASDYHKPAGITVIPP 184
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFF 186
D+ + F+ LPI K G+GK T + ++ GI T E++ QK + L F +
Sbjct: 185 DK--ALEFLRELPIEKFYGVGKKTVEKMHEL-GIYTGEDLYQKDEMELIQRFGRMGYSLY 241
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFS---VTEDKALLYRKLAEIAEMLSADMQKEGLR 243
V G+ + +R RKS+ E T+ TE + L +L IA + +QK
Sbjct: 242 RKV-RGIDNAPVQVSRERKSVGRELTYGKNLTTEQEVL--SELRFIANKVQLSLQKNQKH 298
Query: 244 GRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS--LRLIGLRVTQF 301
G+T+ LK++ ++FE T+ +TL Y+ E+I HA + +S +RL+G+ VT
Sbjct: 299 GKTVVLKVRYSNFETATKRITLPNYVKDGEEIFFHAQNIWDEIGVISRGIRLLGITVTNL 358
Query: 302 N 302
+
Sbjct: 359 D 359
>gi|440288953|ref|YP_007341718.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Enterobacteriaceae bacterium strain FGI 57]
gi|440048475|gb|AGB79533.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Enterobacteriaceae bacterium strain FGI 57]
Length = 351
Score = 148 bits (373), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 112/307 (36%), Positives = 163/307 (53%), Gaps = 26/307 (8%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR+AMP +A KLCP L +P F Y S+ R++F +Y SLDEAYL
Sbjct: 48 ARKFGVRSAMPTGMALKLCPHLTLLPGRFDAYKEASEHIREIFSRYTSLIEPLSLDEAYL 107
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-P 126
D+++ G S IA+E+R +++ E LT SAG+AP + LAK+ SD+NKPNGQFVL P
Sbjct: 108 DVSDSVHCHG-SATLIAQEIRQTIFNELQLTASAGIAPVKFLAKIASDLNKPNGQFVLTP 166
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADF- 185
D V F+ +LP+ KI G+GKV+ L + G+ TCE++ QK L A+ F
Sbjct: 167 AD---VPAFLKTLPLEKIPGVGKVSAAKL-ESMGLKTCEDV-QKSDL--AMLLKRFGKFG 219
Query: 186 --FLSVGLGLGSTNTPQARFRKSISSERTFSVTED-------KALLYRKLAEIAEMLSAD 236
G+ R RKSI ERT + ED +A++ R E+ LS
Sbjct: 220 RILWERSQGIDERAINNERLRKSIGVERTLA--EDIHDWSACEAIIERLYPELERRLS-K 276
Query: 237 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHA-SVLLKAELPVSLRLIG 295
++ + L R +KLK F++ T+ + + ED++ A + +RL+G
Sbjct: 277 VKPDLLIARQ-GVKLKFNDFQLTTQEHVWPRL--NKEDLIATAYKTWHERRAGRGVRLVG 333
Query: 296 LRVTQFN 302
L VT +
Sbjct: 334 LHVTLLD 340
>gi|383811006|ref|ZP_09966486.1| ImpB/MucB/SamB family protein [Prevotella sp. oral taxon 306 str.
F0472]
gi|383356411|gb|EID33915.1| ImpB/MucB/SamB family protein [Prevotella sp. oral taxon 306 str.
F0472]
Length = 378
Score = 148 bits (373), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 108/306 (35%), Positives = 164/306 (53%), Gaps = 19/306 (6%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR +GV +AM A++ CP+L+ VP F +Y S ++F +Y SLDEA+L
Sbjct: 64 ARPYGVHSAMSIVQAKRRCPDLVIVPCHFDRYKEVSRQIHQIFHEYTDLVEPISLDEAFL 123
Query: 68 DITEVCRERGIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP 126
D+TE ++GIS I+IA+E++ ++E LT SAGV+ N+LLAK+ SD+ KP+G +++
Sbjct: 124 DVTE--NKKGISMAIDIAKEIKQKIFERTSLTASAGVSYNKLLAKIASDMRKPDGIYIVH 181
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADF 185
DR M FI SLPI K+ G+G T + ++ G+ E++ + + VF
Sbjct: 182 PDR--AMDFIGSLPIEKLWGVGPRTAAKMHEM-GVFKGEQLRNISYNHMTQVFG-KMGKI 237
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFS---VTEDKAL--LYRKLAEIAEMLSADMQKE 240
+ + G+ +R RKS+ E TF E K + LY E+ E L+ +
Sbjct: 238 YYNFSRGIDERPVIVSRERKSVGCEHTFREDLHIESKIIIELYHLTLELVERLT----RN 293
Query: 241 GLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRV 298
GRTLTLKLK + TR++T K + + DIL A +LL S+RL+GL V
Sbjct: 294 QFEGRTLTLKLKWDATTQITRSLTQGKILRTKHDILPLAKLLLSETGYKKHSIRLMGLSV 353
Query: 299 TQFNED 304
+ D
Sbjct: 354 SSSTTD 359
>gi|418645978|ref|ZP_13208094.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-55]
gi|375022047|gb|EHS15540.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-55]
Length = 356
Score = 148 bits (373), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 101/301 (33%), Positives = 162/301 (53%), Gaps = 11/301 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++GV +AMP A KLCP FV ++F Y S +F Y SLDEAYL
Sbjct: 50 ARKYGVHSAMPMSQAHKLCPNGYFVTSNFGVYRETSAQIMSIFRSYTDKVEPMSLDEAYL 109
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
DITE+ R + +IA+ +R + E+ LT SAGV+ N+ LAK+ S +NKP+G V+
Sbjct: 110 DITELVRP-DLPASKIAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGMTVI-- 166
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFF 186
D V + +L I G+GK ++ ++ D GI ++ +K L +F +
Sbjct: 167 DYQNVHDILMTLDIGDFPGVGKASKKVMHDN-GIFNGRDLYEKTEFELIRLFGKRGRGLY 225
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRG 244
+ G+ + +R RKS+ +ERTF+ V +D+ +L RK+ E++ + + K
Sbjct: 226 -NKARGIDHSEVKSSRVRKSVGTERTFATDVNDDEEIL-RKVWELSGKTAERLNKLQKSA 283
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRVTQFN 302
+T+T+K+KT FE ++ ++L+ +SS EDI A +L + V +RLIG+ V
Sbjct: 284 KTVTVKIKTYQFETLSKQMSLRDSVSSEEDIYNIAYLLYNDLKDPDVPIRLIGVTVGNLE 343
Query: 303 E 303
+
Sbjct: 344 Q 344
>gi|418408826|ref|ZP_12982140.1| DNA polymerase IV [Agrobacterium tumefaciens 5A]
gi|358004842|gb|EHJ97169.1| DNA polymerase IV [Agrobacterium tumefaciens 5A]
Length = 359
Score = 148 bits (373), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 97/293 (33%), Positives = 153/293 (52%), Gaps = 9/293 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FGV +AMP A++ CP+LIFVP F Y S R++F +Y P SLDEAYL
Sbjct: 52 ARTFGVHSAMPSVTAKRKCPDLIFVPPRFEVYRQVSQQIREIFAEYTPLIEPLSLDEAYL 111
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-P 126
D+TE + I+ EIA E+R + L SAG++ N+ LAK+ SD+NKPNGQ V+ P
Sbjct: 112 DVTENLKGMEIA-TEIALEIRAKIKAVTSLNASAGISYNKFLAKMASDLNKPNGQAVITP 170
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFF 186
+ F+ +L ++K G+G T ++ GI T ++ K + +F
Sbjct: 171 KNGPG---FVEALAVKKFHGVGPATAERMKR-HGIETGLDLKSKSLGFLQQHFGKSGPYF 226
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTF-SVTEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
++ G+ R RKS+ +E TF +D L +L +A+ + + + G+
Sbjct: 227 YNIARGIDERQVKPDRIRKSVGAEDTFVEDIDDLDLAKAELGPLAQKVWRYCEAHDITGK 286
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS--LRLIGL 296
T+T+K+K + F TR+ T+ +S I + + LL + P +RL+G+
Sbjct: 287 TVTVKIKYSDFSQATRSKTVSGAVSDLATIQEMSESLLASVFPFKRPVRLLGI 339
>gi|253734997|ref|ZP_04869162.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus
TCH130]
gi|253727179|gb|EES95908.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus
TCH130]
Length = 346
Score = 148 bits (373), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 101/301 (33%), Positives = 163/301 (54%), Gaps = 11/301 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++GV +AMP A KLCP FV ++F Y S +F Y SLDEAYL
Sbjct: 40 ARKYGVYSAMPMSQAHKLCPNGYFVTSNFGAYRETSAQIMSIFRSYTDKVEPMSLDEAYL 99
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
DITE+ R + +IA+ +R + E+ LT SAGV+ N+ LAK+ S +NKP+G V+
Sbjct: 100 DITELVRP-DLPASKIAQYIRKDILEKTHLTASAGVSYNKFLAKLASGMNKPDGMTVI-- 156
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFF 186
D V + +L I + G+GK ++ ++ D GI ++ +K L +F +
Sbjct: 157 DYQNVHDILMTLDIGEFPGVGKASKKVMHDN-GIFNGRDLYEKTEFELIRLFGKRGRGLY 215
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRG 244
+ G+ + +R RKS+ +ERTF+ V +D+ +L RK+ E++ + + K
Sbjct: 216 -NKARGIDHSEVKSSRVRKSVGTERTFATDVNDDEEIL-RKVWELSGKTAERLNKLQKSA 273
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRVTQFN 302
+T+T+K+KT FE ++ ++L+ +SS EDI A +L + V +RLIG+ V
Sbjct: 274 KTVTVKIKTYQFETLSKQMSLRDSVSSEEDIYNIAYLLYNDLKDPDVPIRLIGVTVGNLE 333
Query: 303 E 303
+
Sbjct: 334 Q 334
>gi|148268367|ref|YP_001247310.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus JH9]
gi|150394429|ref|YP_001317104.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus JH1]
gi|189044606|sp|A6U2Z9.1|DPO4_STAA2 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|189044607|sp|A5IU61.1|DPO4_STAA9 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|147741436|gb|ABQ49734.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus
JH9]
gi|149946881|gb|ABR52817.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus
JH1]
Length = 356
Score = 148 bits (373), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 101/301 (33%), Positives = 162/301 (53%), Gaps = 11/301 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++GV +AMP A KLCP FV ++F Y S +F Y SLDEAYL
Sbjct: 50 ARKYGVHSAMPMSQAHKLCPNGYFVTSNFGAYRETSAQIMSIFRSYTDKVEPMSLDEAYL 109
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
DITE+ R + +IA+ +R + E+ LT SAGV+ N+ LAK+ S +NKP+G V+
Sbjct: 110 DITELVRP-DLPASKIAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGLTVI-- 166
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFF 186
D V + +L I G+GK ++ ++ D GI ++ +K L +F +
Sbjct: 167 DYQNVHDILMTLDIGDFPGVGKASKKVMHDN-GIFNGRDLYEKTEFELIRLFGKRGRGLY 225
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRG 244
+ G+ + +R RKS+ +ERTF+ V +D+ +L RK+ E++ + + K
Sbjct: 226 -NKARGIDHSEVKSSRVRKSVGTERTFATDVNDDEEIL-RKVWELSGKTAERLNKLQKSA 283
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRVTQFN 302
+T+T+K+KT FE ++ ++L+ +SS EDI A +L + V +RLIG+ V
Sbjct: 284 KTVTVKIKTYQFETLSKQMSLRDSVSSEEDIYNIAYLLYNDLKDPDVPIRLIGVTVGNLE 343
Query: 303 E 303
+
Sbjct: 344 Q 344
>gi|46908202|ref|YP_014591.1| DNA polymerase IV [Listeria monocytogenes serotype 4b str. F2365]
gi|405753195|ref|YP_006676660.1| DNA-damage-inducible DNA polymerase IV [Listeria monocytogenes
SLCC2378]
gi|67460308|sp|Q71Y46.1|DPO4_LISMF RecName: Full=DNA polymerase IV; Short=Pol IV
gi|46881472|gb|AAT04768.1| putative DNA-damage-inducible protein P [Listeria monocytogenes
serotype 4b str. F2365]
gi|404222395|emb|CBY73758.1| DNA-damage-inducible DNA polymerase IV [Listeria monocytogenes
SLCC2378]
Length = 356
Score = 147 bits (372), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 105/301 (34%), Positives = 160/301 (53%), Gaps = 15/301 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGV +AMP A KLCP IF+ + Y S+ R++F +Y SLDEAYL
Sbjct: 51 ARKFGVHSAMPTRQAAKLCPNGIFIHGNMAHYVEVSNQIREIFSRYTDIIEPLSLDEAYL 110
Query: 68 DITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVL 125
D+TE ++G+ S +A E++ ++Y+E GLT SAGV+ N+ +AK+ SD KP G V
Sbjct: 111 DVTE--NKKGMKSATMVAREIQQTIYQELGLTASAGVSFNKFIAKIASDFKKPAGITVVT 168
Query: 126 PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTA 183
P + A F+ +P+ K G+GKVT L + GI T ++ + L+ + H
Sbjct: 169 PEEAEA---FLEQIPVTKFYGVGKVTAEKLHRL-GIETGADLKKWSEWDLIRELHKHGYH 224
Query: 184 DFFLSVGLGLGSTNTPQARFRKSISSERTFSVTE-DKALLYRKLAEIAEMLSADMQKEGL 242
+ G N P R RKS+ E TF D +L + L + A+ + + K
Sbjct: 225 LYRHVRGRSNNIVN-PH-RDRKSVGKETTFEFNVLDSRVLEQSLMQFAKKVEERLIKLQK 282
Query: 243 RGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQ 300
G+T+ LKL+ + F T+ +TL +Y + + I + A++LL+ S+RLIGL VT
Sbjct: 283 HGKTVVLKLRYSDFTTITKRLTLNEYTNDTSQIYQAAALLLRESYTGQDSIRLIGLTVTN 342
Query: 301 F 301
Sbjct: 343 L 343
>gi|254827139|ref|ZP_05231826.1| DNA polymerase IV [Listeria monocytogenes FSL N3-165]
gi|386044283|ref|YP_005963088.1| DNA polymerase IV [Listeria monocytogenes 10403S]
gi|404411276|ref|YP_006696864.1| DNA-damage-inducible DNA polymerase IV [Listeria monocytogenes
SLCC5850]
gi|258599522|gb|EEW12847.1| DNA polymerase IV [Listeria monocytogenes FSL N3-165]
gi|345537517|gb|AEO06957.1| DNA polymerase IV [Listeria monocytogenes 10403S]
gi|404231102|emb|CBY52506.1| DNA-damage-inducible DNA polymerase IV [Listeria monocytogenes
SLCC5850]
Length = 356
Score = 147 bits (372), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 105/301 (34%), Positives = 160/301 (53%), Gaps = 15/301 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGV +AMP A KLCP IF+ + Y S+ R++F +Y SLDEAYL
Sbjct: 51 ARKFGVHSAMPTRQAAKLCPNGIFIHGNMAHYVEVSNQIREIFSRYTDIIEPLSLDEAYL 110
Query: 68 DITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVL 125
D+TE ++G+ S +A E++ ++Y+E GLT SAGV+ N+ +AK+ SD KP G V
Sbjct: 111 DVTE--NKKGMKSATMVAREIQQTIYQELGLTASAGVSFNKFIAKIASDFKKPAGITVVA 168
Query: 126 PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTA 183
P + A F+ +P+ K G+GKVT L + GI T ++ + L+ + H
Sbjct: 169 PEEAEA---FLEQIPVTKFYGVGKVTAEKLHRL-GIETGADLKKWSEWDLIRELHKHGYH 224
Query: 184 DFFLSVGLGLGSTNTPQARFRKSISSERTFSVTE-DKALLYRKLAEIAEMLSADMQKEGL 242
+ G N P R RKS+ E TF D +L + L + A+ + + K
Sbjct: 225 LYRHVRGRSNNIVN-PH-RDRKSVGKETTFEFNVLDSRVLEQSLMQFAKKVEERLIKLQK 282
Query: 243 RGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQ 300
G+T+ LKL+ + F T+ +TL +Y + + I + A++LL+ S+RLIGL VT
Sbjct: 283 HGKTVVLKLRYSDFTTITKRLTLNEYTNDASQIYQAAALLLRESYTGQDSIRLIGLTVTN 342
Query: 301 F 301
Sbjct: 343 L 343
>gi|387131110|ref|YP_006294000.1| DNA polymerase IV [Methylophaga sp. JAM7]
gi|386272399|gb|AFJ03313.1| DNA polymerase IV [Methylophaga sp. JAM7]
Length = 362
Score = 147 bits (372), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 105/307 (34%), Positives = 164/307 (53%), Gaps = 20/307 (6%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG+ +AMP A +LCP+ IFV F Y S R +F +Y SLDEAYL
Sbjct: 51 ARQFGIHSAMPCARAYRLCPQAIFVRPRFEAYREVSGQIRDIFWRYASEVEPLSLDEAYL 110
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D++ G S IA+ ++ + +E LT SAGV+ N+ LAK+ SD++KPNG +V+
Sbjct: 111 DVSYTADYNG-SATLIAKAIKRDILKETRLTASAGVSYNKFLAKIASDMDKPNGLYVIRP 169
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFF 186
+R F+ +LP+ K GIG TE ++ + GI T ++ K + L F + ++
Sbjct: 170 ERGE--KFVETLPVGKFHGIGPATEAKMKQL-GIETGLDLRNKTLAQLTERFGKA-GHYY 225
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTF-----SVTEDKALLYRKLAEIAEMLSADMQKEG 241
++ + +R RKS+ E TF SVTE L KL ++AE++ + K+
Sbjct: 226 FNIARAIDERPVRSSRTRKSLGKETTFAQDITSVTE----LTTKLLDLAEIVLESLAKQK 281
Query: 242 LRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS---LRLIGLRV 298
L RT+T+K+K + F+ TRA TL I+ + L+ +L A +RL+GL +
Sbjct: 282 LNARTVTVKVKYSDFQQITRAHTLDHSIALGD--LREVIPMLLARTEAGKNPVRLVGLSL 339
Query: 299 TQFNEDK 305
+ F+ K
Sbjct: 340 SGFDAGK 346
>gi|418932215|ref|ZP_13486045.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1750]
gi|418991828|ref|ZP_13539487.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1096]
gi|424767720|ref|ZP_18195035.1| putative DNA polymerase IV [Staphylococcus aureus subsp. aureus
CM05]
gi|377711767|gb|EHT35994.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1750]
gi|377721523|gb|EHT45654.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1096]
gi|402348809|gb|EJU83783.1| putative DNA polymerase IV [Staphylococcus aureus subsp. aureus
CM05]
gi|408423947|emb|CCJ11358.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus ST228]
gi|408425936|emb|CCJ13323.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus ST228]
gi|408427924|emb|CCJ15287.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus ST228]
gi|408429913|emb|CCJ27078.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus ST228]
gi|408431899|emb|CCJ19214.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus ST228]
gi|408433894|emb|CCJ21179.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus ST228]
gi|408435886|emb|CCJ23146.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus ST228]
gi|408437869|emb|CCJ25112.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus ST228]
Length = 346
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 101/301 (33%), Positives = 162/301 (53%), Gaps = 11/301 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++GV +AMP A KLCP FV ++F Y S +F Y SLDEAYL
Sbjct: 40 ARKYGVHSAMPMSQAHKLCPNGYFVTSNFGAYRETSAQIMSIFRSYTDKVEPMSLDEAYL 99
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
DITE+ R + +IA+ +R + E+ LT SAGV+ N+ LAK+ S +NKP+G V+
Sbjct: 100 DITELVRP-DLPASKIAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGLTVI-- 156
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFF 186
D V + +L I G+GK ++ ++ D GI ++ +K L +F +
Sbjct: 157 DYQNVHDILMTLDIGDFPGVGKASKKVMHDN-GIFNGRDLYEKTEFELIRLFGKRGRGLY 215
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRG 244
+ G+ + +R RKS+ +ERTF+ V +D+ +L RK+ E++ + + K
Sbjct: 216 -NKARGIDHSEVKSSRVRKSVGTERTFATDVNDDEEIL-RKVWELSGKTAERLNKLQKSA 273
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRVTQFN 302
+T+T+K+KT FE ++ ++L+ +SS EDI A +L + V +RLIG+ V
Sbjct: 274 KTVTVKIKTYQFETLSKQMSLRDSVSSEEDIYNIAYLLYNDLKDPDVPIRLIGVTVGNLE 333
Query: 303 E 303
+
Sbjct: 334 Q 334
>gi|417897786|ref|ZP_12541714.1| putative DNA polymerase IV [Staphylococcus aureus subsp. aureus
21259]
gi|341849861|gb|EGS90998.1| putative DNA polymerase IV [Staphylococcus aureus subsp. aureus
21259]
Length = 356
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 101/301 (33%), Positives = 163/301 (54%), Gaps = 11/301 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++GV +AMP A KLCP FV ++F Y S +F Y SLDEAYL
Sbjct: 50 ARKYGVYSAMPMSQAHKLCPNGYFVTSNFGAYRETSAQIMSIFRSYTDKVEPMSLDEAYL 109
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
DITE+ R + +IA+ +R + E+ LT SAGV+ N+ LAK+ S +NKP+G V+
Sbjct: 110 DITELVRP-DLPASKIAQYIRKDILEKTHLTASAGVSYNKFLAKLASGMNKPDGMTVI-- 166
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFF 186
D V + +L I + G+GK ++ ++ D GI ++ +K L +F +
Sbjct: 167 DYQNVHDILMTLDIGEFPGVGKASKKVMHDN-GIFNGRDLYEKTEFELIRLFGKRGRGLY 225
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRG 244
+ G+ + +R RKS+ +ERTF+ V +D+ +L RK+ E++ + + K
Sbjct: 226 -NKARGIDHSEVKSSRVRKSVGTERTFATDVNDDEEIL-RKVWELSGKTAERLNKLQKSA 283
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRVTQFN 302
+T+T+K+KT FE ++ ++L+ +SS EDI A +L + V +RLIG+ V
Sbjct: 284 KTVTVKIKTYQFETLSKQMSLRDSVSSEEDIYNIAYLLYNDLKDPDVPIRLIGVTVGNLE 343
Query: 303 E 303
+
Sbjct: 344 Q 344
>gi|325955402|ref|YP_004239062.1| DNA polymerase IV [Weeksella virosa DSM 16922]
gi|323438020|gb|ADX68484.1| DNA polymerase IV [Weeksella virosa DSM 16922]
Length = 357
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 111/310 (35%), Positives = 170/310 (54%), Gaps = 23/310 (7%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARR+GVR+AMP +A++ CP+LIFV +F Y S+ +++F +Y SLDEAYL
Sbjct: 48 ARRYGVRSAMPSAVAKRKCPQLIFVKGNFAAYKEVSNQIKEIFAEYTDLIEPLSLDEAYL 107
Query: 68 DITEVCRERGISGIE----IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF 123
D+T IE IA+E++ + E LT SAGV+ N+ LAK+ SD KP+G F
Sbjct: 108 DVTH-----NHPNIEYATTIAKEIKQKIKETTKLTASAGVSFNKFLAKIASDYRKPDGLF 162
Query: 124 VLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL--LCAVFSHS 181
V+ +MA F+ LPI K GIGK T +R + I T ++ L+K SL + F S
Sbjct: 163 VI-TPKMA-EKFVEELPIEKFYGIGKQTAQRMR-MMNIETGKD-LKKLSLEKILREFGKS 218
Query: 182 TADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTE--DKALLYRKLAEIAEMLSADMQK 239
++ ++ + R RKSI +E TF VT+ D L ++L + E + K
Sbjct: 219 GL-YYYNIARAIDHREVKSHRIRKSIGTENTF-VTDLNDLQELKKRLIPMIEEVWMWTVK 276
Query: 240 EGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHAS--VLLKAELPV-SLRLIGL 296
GRT+TLK+K F+V T++ T I ++ + K A+ +L +A P +RLIG+
Sbjct: 277 NQTYGRTITLKMKFNDFQVSTKSKTFLFSIQDAQ-LFKQAALELLQEAYTPFRPVRLIGI 335
Query: 297 RVTQFNEDKV 306
++ + +K+
Sbjct: 336 SLSNLDHNKL 345
>gi|258408893|ref|ZP_05681175.1| DNA polymerase IV [Staphylococcus aureus A9763]
gi|257840340|gb|EEV64802.1| DNA polymerase IV [Staphylococcus aureus A9763]
Length = 337
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 101/301 (33%), Positives = 162/301 (53%), Gaps = 11/301 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++GV +AMP A KLCP FV ++F Y S +F Y SLDEAYL
Sbjct: 31 ARKYGVHSAMPMSQAHKLCPNGYFVTSNFGAYRETSAQIMSIFRSYTDKVEPMSLDEAYL 90
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
DITE+ R + +IA+ +R + E+ LT SAGV+ N+ LAK+ S +NKP+G V+
Sbjct: 91 DITELVRP-DLPASKIAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGLTVI-- 147
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFF 186
D V + +L I G+GK ++ ++ D GI ++ +K L +F +
Sbjct: 148 DYQNVHDILMTLDIGDFPGVGKASKKVMHD-NGIFNGRDLYEKTEFELIRLFGKRGRGLY 206
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRG 244
+ G+ + +R RKS+ +ERTF+ V +D+ +L RK+ E++ + + K
Sbjct: 207 -NKARGIDHSEVKSSRVRKSVGTERTFATDVNDDEEIL-RKVWELSGKTAERLNKLQKSA 264
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRVTQFN 302
+T+T+K+KT FE ++ ++L+ +SS EDI A +L + V +RLIG+ V
Sbjct: 265 KTVTVKIKTYQFETLSKQMSLRDSVSSEEDIYNIAYLLYNDLKDPDVPIRLIGVTVGNLE 324
Query: 303 E 303
+
Sbjct: 325 Q 325
>gi|408789869|ref|ZP_11201510.1| DNA polymerase IV [Lactobacillus florum 2F]
gi|408520891|gb|EKK20913.1| DNA polymerase IV [Lactobacillus florum 2F]
Length = 351
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 101/298 (33%), Positives = 161/298 (54%), Gaps = 12/298 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG+ +AMP AR+LCP+ +F DFT + SD ++F +Y + +LDEAYL
Sbjct: 43 ARQFGIHSAMPAEQARRLCPQAVFFQPDFTLFRMVSDQIHQIFHEYTDQIESVALDEAYL 102
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
DIT+ R + + +A L++ ++E+ LTCS G++ + LAK SD KP G ++
Sbjct: 103 DITD-NRMNVDNPVWLAHLLQSEIWEKTHLTCSTGISYCKFLAKEASDYQKPAGMTMISE 161
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFF 186
+ F+ LPI++ G+GK T I + GI T ++ Q +LL F +
Sbjct: 162 QE--ALPFLKRLPIQRFRGVGKQTS-IKMEQLGIKTGADLYQLSEALLINQFGKLGYILY 218
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRG 244
V G+ R RKS+ E TF +TE A + L+ +A+ + + +QK L G
Sbjct: 219 RRVR-GIDDRPVIGQRLRKSLGKEETFRHFLTELSA-MQTVLSRLAKEVCSGLQKSQLHG 276
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV---SLRLIGLRVT 299
+TL LK++ A F +RTR +T + ++ D L+ A++ + LP +RL+GL VT
Sbjct: 277 KTLVLKVRYADFTMRTRRLTRSDFFANDVDELQEAAMQILTTLPSKPGGIRLLGLTVT 334
>gi|404414053|ref|YP_006699640.1| DNA-damage-inducible DNA polymerase IV [Listeria monocytogenes
SLCC7179]
gi|404239752|emb|CBY61153.1| DNA-damage-inducible DNA polymerase IV [Listeria monocytogenes
SLCC7179]
Length = 356
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 105/301 (34%), Positives = 160/301 (53%), Gaps = 15/301 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGV +AMP A KLCP IF+ + Y S+ R++F +Y SLDEAYL
Sbjct: 51 ARKFGVHSAMPTKQAAKLCPNGIFIHGNMAHYVEVSNQIREIFSRYTDIIEPLSLDEAYL 110
Query: 68 DITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVL 125
D+TE ++G+ S +A E++ ++Y+E GLT SAGV+ N+ +AK+ SD KP G V
Sbjct: 111 DVTE--NKKGMKSATMVAREIQQTIYQELGLTASAGVSFNKFIAKIASDFKKPAGITVVA 168
Query: 126 PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTA 183
P + A F+ +P+ K G+GKVT L + GI T ++ + L+ + H
Sbjct: 169 PEEAEA---FLEQIPVTKFYGVGKVTAEKLHRL-GIETGADLKKWSEWDLIRELHKHGYH 224
Query: 184 DFFLSVGLGLGSTNTPQARFRKSISSERTFSVTE-DKALLYRKLAEIAEMLSADMQKEGL 242
+ G N P R RKS+ E TF D +L + L + A+ + + K
Sbjct: 225 LYRHVRGRSNNIVN-PH-RDRKSVGKETTFEFNVLDSRVLEQSLMQFAKKVEERLIKLQK 282
Query: 243 RGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQ 300
G+T+ LKL+ + F T+ +TL +Y + + I + A++LL+ S+RLIGL VT
Sbjct: 283 HGKTVVLKLRYSDFTTITKRLTLNEYTNDASQIYQAAALLLRESYTGQDSIRLIGLTVTN 342
Query: 301 F 301
Sbjct: 343 L 343
>gi|389797332|ref|ZP_10200375.1| DNA polymerase IV [Rhodanobacter sp. 116-2]
gi|388447706|gb|EIM03706.1| DNA polymerase IV [Rhodanobacter sp. 116-2]
Length = 366
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 109/309 (35%), Positives = 155/309 (50%), Gaps = 9/309 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FGVR+AMP A +LCP+LIFVP DF +Y S R++F ++ SLDEAYL
Sbjct: 59 ARVFGVRSAMPAIRAERLCPQLIFVPPDFVRYKAVSRQVREIFARHTELIEPLSLDEAYL 118
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T G S AE +R ++ +E LT SAGVAPN+ LAK+ SD KP+G FV+
Sbjct: 119 DVTTTKSGLG-SATATAEAIREAIRKETRLTASAGVAPNKFLAKIASDFRKPDGLFVIRP 177
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
+ V F++ LP+ ++ G+GKV E L GI T E+
Sbjct: 178 QQ--VEAFLTPLPVGRLPGVGKVMEAKL-AALGIATVGELRAFAQAELEQRFGRWGRRLH 234
Query: 188 SVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKE-GLRGRT 246
+ G+ R +S+E TF L + ++AE A Q+E G RT
Sbjct: 235 ELAQGIDEHPVQPQRPTLQVSAEDTFEHDLRLDELEPHIRQLAEKAWAGHQREHGRVART 294
Query: 247 LTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELPVS--LRLIGLRVTQF-N 302
+ LKLKTA F TR++T S+ ++ A L + + P RL+G+ + F +
Sbjct: 295 VVLKLKTADFHTLTRSLTPPTRPMSAAELADIACALRERVQRPADSRYRLVGVGLAGFVD 354
Query: 303 EDKVRAPSD 311
D +A SD
Sbjct: 355 RDGYQAQSD 363
>gi|366161628|ref|ZP_09461490.1| DNA polymerase IV [Escherichia sp. TW09308]
gi|432371030|ref|ZP_19614094.1| DNA polymerase IV [Escherichia coli KTE11]
gi|430900243|gb|ELC22262.1| DNA polymerase IV [Escherichia coli KTE11]
Length = 351
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 88/213 (41%), Positives = 122/213 (57%), Gaps = 16/213 (7%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR+AMP +A KLCP L +P F Y S+ R++F +Y SLDEAYL
Sbjct: 48 ARKFGVRSAMPTGMALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYL 107
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-P 126
D+T+ G S IA+E+R +++ E LT SAGVAP + LAK+ SD+NKPNGQFV+ P
Sbjct: 108 DVTDSVHCHG-SATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITP 166
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAV-----FSHS 181
D V F+ +LP+ KI G+GKV+ L + G+ TC + +QK L+ + F H
Sbjct: 167 AD---VPAFLQTLPLAKIPGVGKVSAAKL-EAMGLRTCGD-VQKYDLVMLLKRFGKFGH- 220
Query: 182 TADFFLSVGLGLGSTNTPQARFRKSISSERTFS 214
G+ + R RKS+ ERT +
Sbjct: 221 ---ILWERSQGIDERDVNSERLRKSVGVERTMA 250
>gi|387824674|ref|YP_005824145.1| DNA polymerase IV [Francisella cf. novicida 3523]
gi|332184140|gb|AEE26394.1| DNA polymerase IV [Francisella cf. novicida 3523]
Length = 351
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 106/298 (35%), Positives = 159/298 (53%), Gaps = 19/298 (6%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR +GVR+AMP IA + CP LI + TDF KY S + R +F + SLDEAYL
Sbjct: 51 AREYGVRSAMPTAIAMQKCPNLILLNTDFAKYKAASAIIRNIFYSFTDKVEPLSLDEAYL 110
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T+V RE S IA+ ++ ++ + GLT SAGVAPN+LLAK+ SDINKPNG +V+
Sbjct: 111 DVTDV-REYKNSATLIAQAIKQEIFNKTGLTGSAGVAPNKLLAKIASDINKPNGLYVITP 169
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADF-- 185
++ V FI LP++K+ G+GKV + L+ + + TC + LQ+ SL A+ F
Sbjct: 170 EQ--VNNFIKDLPVKKLFGVGKVCQEKLKSM-NVETCLD-LQRLSL--AILIDKFGKFGN 223
Query: 186 -FLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALL---YRKLAEIAEMLSADMQKEG 241
+ G+ + RKS+S E T+ ED L KL + + L++ M +E
Sbjct: 224 NLYNYARGIDNREVNPIHIRKSVSVENTY--LEDLKTLEACLEKLPSLYDKLTSRMSEEH 281
Query: 242 LRGRTLTLKLKTASFEVRTRAVTLQKYISS-SEDILKHASVLLKAELPVSLRLIGLRV 298
+ + + +VR +L + S + LK+ L + +RLIG+ V
Sbjct: 282 YKS---IVGIVVKFTDVRFNKTSLTRVAKSLDKQTLKNLITELYQKQSQPIRLIGIGV 336
>gi|15924885|ref|NP_372419.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus Mu50]
gi|15927469|ref|NP_375002.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus N315]
gi|156980211|ref|YP_001442470.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus Mu3]
gi|253316904|ref|ZP_04840117.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus str.
CF-Marseille]
gi|255006682|ref|ZP_05145283.2| DNA polymerase IV [Staphylococcus aureus subsp. aureus Mu50-omega]
gi|257793751|ref|ZP_05642730.1| DNA polymerase IV [Staphylococcus aureus A9781]
gi|258421003|ref|ZP_05683934.1| DNA polymerase IV [Staphylococcus aureus A9719]
gi|258430025|ref|ZP_05688395.1| DNA polymerase IV [Staphylococcus aureus A9299]
gi|258443457|ref|ZP_05691799.1| DNA polymerase IV [Staphylococcus aureus A8115]
gi|258445315|ref|ZP_05693506.1| DNA polymerase IV [Staphylococcus aureus A6300]
gi|258447879|ref|ZP_05696013.1| DNA polymerase IV [Staphylococcus aureus A6224]
gi|258453312|ref|ZP_05701297.1| DNA polymerase IV [Staphylococcus aureus A5937]
gi|269203548|ref|YP_003282817.1| DNA-damage-inducible protein P [Staphylococcus aureus subsp. aureus
ED98]
gi|282894562|ref|ZP_06302790.1| DNA polymerase IV [Staphylococcus aureus A8117]
gi|282928068|ref|ZP_06335675.1| DNA polymerase IV [Staphylococcus aureus A10102]
gi|295407275|ref|ZP_06817074.1| DNA polymerase IV [Staphylococcus aureus A8819]
gi|296276904|ref|ZP_06859411.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus MR1]
gi|297246199|ref|ZP_06930050.1| DNA polymerase IV [Staphylococcus aureus A8796]
gi|384865100|ref|YP_005750459.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
ECT-R 2]
gi|386831484|ref|YP_006238138.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
HO 5096 0412]
gi|387151036|ref|YP_005742600.1| DNA polymerase IV [Staphylococcus aureus 04-02981]
gi|415693410|ref|ZP_11455212.1| hypothetical protein CGSSa03_08540 [Staphylococcus aureus subsp.
aureus CGS03]
gi|417652327|ref|ZP_12302075.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 21172]
gi|417799257|ref|ZP_12446403.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 21310]
gi|417802359|ref|ZP_12449421.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 21318]
gi|417892730|ref|ZP_12536773.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 21201]
gi|418313350|ref|ZP_12924841.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21334]
gi|418425084|ref|ZP_12998184.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus VRS1]
gi|418428036|ref|ZP_13001029.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus VRS2]
gi|418430906|ref|ZP_13003812.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus VRS3a]
gi|418434765|ref|ZP_13006620.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus VRS4]
gi|418437519|ref|ZP_13009303.1| dinP- DNA-damage-inducible protein P DNA polymerase IV
[Staphylococcus aureus subsp. aureus VRS5]
gi|418440428|ref|ZP_13012121.1| dinP- DNA-damage-inducible protein P DNA polymerase IV
[Staphylococcus aureus subsp. aureus VRS6]
gi|418443426|ref|ZP_13015021.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus VRS7]
gi|418446497|ref|ZP_13017961.1| dinP- DNA-damage-inducible protein P DNA polymerase IV
[Staphylococcus aureus subsp. aureus VRS8]
gi|418449518|ref|ZP_13020893.1| dinP- DNA-damage-inducible protein P DNA polymerase IV
[Staphylococcus aureus subsp. aureus VRS9]
gi|418452343|ref|ZP_13023672.1| dinP- DNA-damage-inducible protein P DNA polymerase IV
[Staphylococcus aureus subsp. aureus VRS10]
gi|418455316|ref|ZP_13026569.1| dinP- DNA-damage-inducible protein P DNA polymerase IV
[Staphylococcus aureus subsp. aureus VRS11a]
gi|418458192|ref|ZP_13029385.1| dinP- DNA-damage-inducible protein P DNA polymerase IV
[Staphylococcus aureus subsp. aureus VRS11b]
gi|418600140|ref|ZP_13163609.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21343]
gi|418640175|ref|ZP_13202408.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-3]
gi|418653301|ref|ZP_13215240.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-99]
gi|418656863|ref|ZP_13218650.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-105]
gi|418878853|ref|ZP_13433085.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1165]
gi|418881582|ref|ZP_13435797.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1213]
gi|418884557|ref|ZP_13438743.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1769]
gi|418887258|ref|ZP_13441399.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1150]
gi|418894685|ref|ZP_13448783.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1057]
gi|418915025|ref|ZP_13468993.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIGC340D]
gi|418920153|ref|ZP_13474087.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIGC348]
gi|419784424|ref|ZP_14310191.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-M]
gi|443635272|ref|ZP_21119403.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21236]
gi|54036997|sp|P63992.1|DPO4_STAAN RecName: Full=DNA polymerase IV; Short=Pol IV
gi|54040958|sp|P63991.1|DPO4_STAAM RecName: Full=DNA polymerase IV; Short=Pol IV
gi|189044605|sp|A7X420.1|DPO4_STAA1 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|13701688|dbj|BAB42981.1| SA1711 [Staphylococcus aureus subsp. aureus N315]
gi|14247667|dbj|BAB58057.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus Mu50]
gi|156722346|dbj|BAF78763.1| hypothetical protein SAHV_1880 [Staphylococcus aureus subsp. aureus
Mu3]
gi|257787723|gb|EEV26063.1| DNA polymerase IV [Staphylococcus aureus A9781]
gi|257842951|gb|EEV67369.1| DNA polymerase IV [Staphylococcus aureus A9719]
gi|257849619|gb|EEV73587.1| DNA polymerase IV [Staphylococcus aureus A9299]
gi|257851342|gb|EEV75282.1| DNA polymerase IV [Staphylococcus aureus A8115]
gi|257855833|gb|EEV78757.1| DNA polymerase IV [Staphylococcus aureus A6300]
gi|257858811|gb|EEV81680.1| DNA polymerase IV [Staphylococcus aureus A6224]
gi|257864520|gb|EEV87263.1| DNA polymerase IV [Staphylococcus aureus A5937]
gi|262075838|gb|ACY11811.1| DNA-damage-inducible protein P [Staphylococcus aureus subsp. aureus
ED98]
gi|282590132|gb|EFB95213.1| DNA polymerase IV [Staphylococcus aureus A10102]
gi|282763049|gb|EFC03181.1| DNA polymerase IV [Staphylococcus aureus A8117]
gi|285817575|gb|ADC38062.1| DNA polymerase IV [Staphylococcus aureus 04-02981]
gi|294967850|gb|EFG43880.1| DNA polymerase IV [Staphylococcus aureus A8819]
gi|297176906|gb|EFH36163.1| DNA polymerase IV [Staphylococcus aureus A8796]
gi|312830267|emb|CBX35109.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
ECT-R 2]
gi|315129296|gb|EFT85290.1| hypothetical protein CGSSa03_08540 [Staphylococcus aureus subsp.
aureus CGS03]
gi|329724814|gb|EGG61318.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 21172]
gi|334274366|gb|EGL92687.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 21310]
gi|334274843|gb|EGL93150.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 21318]
gi|341857210|gb|EGS98032.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 21201]
gi|365236159|gb|EHM77060.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21334]
gi|374395052|gb|EHQ66326.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21343]
gi|375015118|gb|EHS08783.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-3]
gi|375018963|gb|EHS12529.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-99]
gi|375032138|gb|EHS25391.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-105]
gi|377693131|gb|EHT17506.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1165]
gi|377696038|gb|EHT20395.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1057]
gi|377712330|gb|EHT36548.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1769]
gi|377722126|gb|EHT46253.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1150]
gi|377730091|gb|EHT54165.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1213]
gi|377755053|gb|EHT78957.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIGC340D]
gi|377766065|gb|EHT89903.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIGC348]
gi|383364037|gb|EID41359.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-M]
gi|385196876|emb|CCG16513.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
HO 5096 0412]
gi|387716866|gb|EIK04904.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus VRS2]
gi|387717367|gb|EIK05382.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus VRS3a]
gi|387717639|gb|EIK05639.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus VRS1]
gi|387724007|gb|EIK11693.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus VRS4]
gi|387726071|gb|EIK13655.1| dinP- DNA-damage-inducible protein P DNA polymerase IV
[Staphylococcus aureus subsp. aureus VRS5]
gi|387729222|gb|EIK16678.1| dinP- DNA-damage-inducible protein P DNA polymerase IV
[Staphylococcus aureus subsp. aureus VRS6]
gi|387733714|gb|EIK20887.1| dinP- DNA-damage-inducible protein P DNA polymerase IV
[Staphylococcus aureus subsp. aureus VRS8]
gi|387735534|gb|EIK22654.1| dinP- DNA-damage-inducible protein P DNA polymerase IV
[Staphylococcus aureus subsp. aureus VRS9]
gi|387735637|gb|EIK22748.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus VRS7]
gi|387743458|gb|EIK30250.1| dinP- DNA-damage-inducible protein P DNA polymerase IV
[Staphylococcus aureus subsp. aureus VRS10]
gi|387743497|gb|EIK30288.1| dinP- DNA-damage-inducible protein P DNA polymerase IV
[Staphylococcus aureus subsp. aureus VRS11a]
gi|387745166|gb|EIK31927.1| dinP- DNA-damage-inducible protein P DNA polymerase IV
[Staphylococcus aureus subsp. aureus VRS11b]
gi|443409751|gb|ELS68242.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21236]
Length = 356
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 101/301 (33%), Positives = 162/301 (53%), Gaps = 11/301 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++GV +AMP A KLCP FV ++F Y S +F Y SLDEAYL
Sbjct: 50 ARKYGVHSAMPMSQAHKLCPNGYFVTSNFGAYRETSAQIMSIFRSYTDKVEPMSLDEAYL 109
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
DITE+ R + +IA+ +R + E+ LT SAGV+ N+ LAK+ S +NKP+G V+
Sbjct: 110 DITELVRP-DLPASKIAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGLTVI-- 166
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFF 186
D V + +L I G+GK ++ ++ D GI ++ +K L +F +
Sbjct: 167 DYQNVHDILMTLDIGDFPGVGKASKKVMHDN-GIFNGRDLYEKTEFELIRLFGKRGRGLY 225
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRG 244
+ G+ + +R RKS+ +ERTF+ V +D+ +L RK+ E++ + + K
Sbjct: 226 -NKARGIDHSEVKSSRVRKSVGTERTFATDVNDDEEIL-RKVWELSGKTAERLNKLQKSA 283
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRVTQFN 302
+T+T+K+KT FE ++ ++L+ +SS EDI A +L + V +RLIG+ V
Sbjct: 284 KTVTVKIKTYQFETLSKQMSLRDSVSSEEDIYNIAYLLYNDLKDPDVPIRLIGVTVGNLE 343
Query: 303 E 303
+
Sbjct: 344 Q 344
>gi|431751229|ref|ZP_19539921.1| DNA polymerase IV [Enterococcus faecium E2620]
gi|430615883|gb|ELB52821.1| DNA polymerase IV [Enterococcus faecium E2620]
Length = 373
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 102/304 (33%), Positives = 163/304 (53%), Gaps = 19/304 (6%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG+ +AM A KLCP+ IF P D KY+ S R+VF Y S+DEAYL
Sbjct: 63 ARKFGIHSAMSAQKAYKLCPQAIFKPGDHHKYSEISKQVREVFYHYTDIVEPVSIDEAYL 122
Query: 68 DITEV---CRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QF 123
D+TE C+ S I+IA ++ ++E LTCSAGV+ N+ LAK+ SD KP G
Sbjct: 123 DVTENKINCK----SAIKIARMIQADIWERVQLTCSAGVSYNKFLAKLASDYQKPRGITV 178
Query: 124 VLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHST 182
V P D + F+ +LPI K G+GK T + ++ GI T +++ + + L F
Sbjct: 179 VAPQD---AVPFLKTLPIEKFHGVGKKTVPRMHEL-GIYTGKDLYECTEMTLIRNFGKMG 234
Query: 183 ADFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKE 240
+ V G+ + R RKS+ E T+ + ++A+L +L ++AE + +++
Sbjct: 235 YSLYRKVR-GIHDSPVNVTRERKSVGKEHTYGQPLQTEEAVL-AQLRQLAEKVEEALRRV 292
Query: 241 GLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRV 298
G+T+ LK++ + T+ VTL +YI E + AS++ + L V +RL+G+ +
Sbjct: 293 QKHGKTVVLKVRYTDYSTVTKRVTLPEYIYKKEALFYQASLIWEEILGVEKGIRLLGITL 352
Query: 299 TQFN 302
T +
Sbjct: 353 TNLD 356
>gi|257138591|ref|ZP_05586853.1| DNA polymerase IV [Burkholderia thailandensis E264]
Length = 378
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 112/308 (36%), Positives = 167/308 (54%), Gaps = 27/308 (8%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFGV +AM +A + CP+L+ +P+ KY S L ++ Y P+ SLDEAYL
Sbjct: 55 ARRFGVHSAMSSALAMRKCPDLLILPSAMDKYRAASRLIMAIYRDYTPDVEPLSLDEAYL 114
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-P 126
D++ R G SG IA E+R V + G+T SAGVAPN+ +AK+ SD NKP+G FV+ P
Sbjct: 115 DVSRATRCHG-SGTLIAREIRERVRDTVGVTVSAGVAPNKFIAKIASDWNKPDGLFVVRP 173
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADF- 185
++ V F+++LP+RK+ G+GKVT L D GI TC E L+ SL H F
Sbjct: 174 HE---VDAFVAALPVRKLHGVGKVTAARL-DKLGIRTCSE-LRGWSLF--DLHHEFGAFG 226
Query: 186 --FLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEI---AEMLSADMQKE 240
+ G+ + RKS+S E T+ +D A L + AEI +L A +++
Sbjct: 227 RRLYELARGIDERPVRADQERKSVSVETTY--VQDLATLDQCAAEIRRLTALLDARIERA 284
Query: 241 GLRG--RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGL 296
G R L +K++ A F+ T + ++ + D S+L K A ++RL+G+
Sbjct: 285 GAARSIRKLYVKIRFADFQ-----RTTVECVADATDAETAVSLLAKGLARRKQAVRLLGV 339
Query: 297 RVTQFNED 304
V + +ED
Sbjct: 340 GV-RIDED 346
>gi|417861785|ref|ZP_12506840.1| DNA polymerase IV [Agrobacterium tumefaciens F2]
gi|338822189|gb|EGP56158.1| DNA polymerase IV [Agrobacterium tumefaciens F2]
Length = 359
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 99/299 (33%), Positives = 154/299 (51%), Gaps = 9/299 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FGV +AMP AR+ CP+LIFV F Y S R++F +Y P SLDEAYL
Sbjct: 52 ARTFGVHSAMPSVTARRKCPDLIFVLPRFDVYRQVSQQIREIFAEYTPLIEPLSLDEAYL 111
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-P 126
D+TE + I+ EIA E+R + GL SAG++ N+ LAK+ SD+NKPNGQ V+ P
Sbjct: 112 DVTENLKGMEIA-TEIALEIRARIKAVTGLNASAGISYNKFLAKMASDLNKPNGQAVITP 170
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFF 186
+ F+ +L ++K G+G T +R GI T ++ K + +F
Sbjct: 171 KNGPG---FVEALAVKKFHGVGPATAERMRR-HGIETGLDLKSKSLGFLQQHFGKSGPYF 226
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTF-SVTEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
++ G+ R RKS+ +E TF +D L +L A+ + + + G+
Sbjct: 227 YNIARGIDERQVRPDRIRKSVGAEDTFIEDIDDLDLAKAELGPFAQKVWRYCEAHDITGK 286
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFN 302
T+T+K+K + F TR+ T+ + I + A LL + P +RL+G+ ++ +
Sbjct: 287 TVTVKIKYSDFTQATRSRTVSGAVPDLATIQEMAETLLASVFPFKRPVRLLGVTLSSLS 345
>gi|431760524|ref|ZP_19549122.1| DNA polymerase IV [Enterococcus faecium E3346]
gi|430623868|gb|ELB60539.1| DNA polymerase IV [Enterococcus faecium E3346]
Length = 372
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 101/304 (33%), Positives = 165/304 (54%), Gaps = 19/304 (6%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG+ +AM A +LCP+ IF P D KY+ S R+VF +Y S+DEAYL
Sbjct: 62 ARKFGIHSAMSAQKAYELCPQAIFKPGDHHKYSDISKQVREVFYRYTDIVEPVSIDEAYL 121
Query: 68 DITEV---CRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QF 123
D+TE C+ S I+IA ++ +++E LTCSAGV+ N+ LAK+ SD KP G
Sbjct: 122 DVTENKINCK----SAIKIARMIQANIWESVQLTCSAGVSYNKFLAKLASDYQKPRGITV 177
Query: 124 VLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHST 182
V P D + F+ +LPI K G+GK T + ++ GI T +++ + +L F
Sbjct: 178 VAPQD---AVPFLKALPIEKFHGVGKKTVPRMHEL-GIYTGKDLYECTEMMLIRNFGKMG 233
Query: 183 ADFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKE 240
+ V G+ + R RKS+ E T+ + ++A+L +L ++AE + +++
Sbjct: 234 YSLYRKVR-GIHDSPVNVTRERKSVGKEHTYGQPLQTEEAVL-TQLRQLAEKVEEALRRV 291
Query: 241 GLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRV 298
G+T+ LK++ + T+ VTL +YI E + AS++ + L V +RL+G+ +
Sbjct: 292 QKHGKTVVLKVRYTDYSTVTKRVTLPEYIYKKEALFYQASLIWEEILGVEKGIRLLGITL 351
Query: 299 TQFN 302
T +
Sbjct: 352 TNLD 355
>gi|153003022|ref|YP_001377347.1| DNA-directed DNA polymerase [Anaeromyxobacter sp. Fw109-5]
gi|152026595|gb|ABS24363.1| DNA-directed DNA polymerase [Anaeromyxobacter sp. Fw109-5]
Length = 399
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 107/299 (35%), Positives = 152/299 (50%), Gaps = 11/299 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFGVR+AMP ARKLCPE FV F +Y S+ ++ +Y P SLDEA+L
Sbjct: 50 ARRFGVRSAMPTAQARKLCPEGTFVAPRFARYAELSERVFGIYRRYTPLVEPLSLDEAFL 109
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T R G +IA ++ +V E GL SAGVA +L AK+ +D+ KP+G +P
Sbjct: 110 DVT-ASRALHGGGRDIATAVKRAVRGECGLAVSAGVAEVKLAAKIATDLGKPDGLVEVPP 168
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHSTADFF 186
V F++ LP+ ++ G+G VTE LR G+ E+ + + L AV S A
Sbjct: 169 G--GVAAFLAPLPVGRLWGVGPVTEGALRK-LGVTLVGELARLPETALAAVVGASNARGL 225
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFSVTED---KALLYRKLAEIAEMLSADMQKEGLR 243
++ G +S+ +E TF ED +A L R L E A + ++ GL
Sbjct: 226 RALASGEDPREVVPDEEARSVGAEETFG--EDVTGRAALERALLEQAGRVGRRLRAAGLA 283
Query: 244 GRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASV-LLKAELPVSLRLIGLRVTQF 301
G T+TLK+K A F + TR TL I + A L + E +RL G+ V+ F
Sbjct: 284 GHTVTLKVKYADFTLVTRRTTLAHPTDDDRAIYEAARAQLARVEADRPVRLTGVSVSGF 342
>gi|418568277|ref|ZP_13132626.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21272]
gi|371980042|gb|EHO97258.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21272]
Length = 356
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 101/301 (33%), Positives = 162/301 (53%), Gaps = 11/301 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++GV +AMP A KLCP FV ++F Y S +F Y SLDEAYL
Sbjct: 50 ARKYGVHSAMPMSQAHKLCPNGYFVTSNFGAYRETSAQIMSIFRSYTDKVEPMSLDEAYL 109
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
DITE+ R + +IA+ +R + E+ LT SAGV+ N+ LAK+ S +NKP+G V+
Sbjct: 110 DITELVRP-DLPASKIAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGLTVV-- 166
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFF 186
D V + +L I G+GK ++ ++ D GI ++ +K L +F +
Sbjct: 167 DYQNVHDILMTLDIGDFPGVGKASKKVMHDN-GIFNGRDLYEKTEFELIRLFGKRGRGLY 225
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRG 244
+ G+ + +R RKS+ +ERTF+ V +D+ +L RK+ E++ + + K
Sbjct: 226 -NKARGIDHSEVKSSRVRKSVGTERTFATDVNDDEEIL-RKVWELSGKTAERLNKLQKSA 283
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRVTQFN 302
+T+T+K+KT FE ++ ++L+ +SS EDI A +L + V +RLIG+ V
Sbjct: 284 KTVTVKIKTYQFETLSKQMSLRDSVSSEEDIYNIAYLLYNDLKDPDVPIRLIGVTVGNLE 343
Query: 303 E 303
+
Sbjct: 344 Q 344
>gi|320352846|ref|YP_004194185.1| DNA-directed DNA polymerase [Desulfobulbus propionicus DSM 2032]
gi|320121348|gb|ADW16894.1| DNA-directed DNA polymerase [Desulfobulbus propionicus DSM 2032]
Length = 388
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 103/304 (33%), Positives = 155/304 (50%), Gaps = 8/304 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FG+ +AMP A +LCP+ +F+ +Y S +F +Y P S+DEA+L
Sbjct: 51 ARAFGIHSAMPSVRAHQLCPQAVFIRPRMARYQEMSRQIMTLFRRYTPLVEQLSVDEAFL 110
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T+ S IA+ +R ++ E GLT SAGV+ N+ LAK+ S +KP+G V+P
Sbjct: 111 DVTDNLMGEP-SATRIAQAIRAAIRETTGLTASAGVSYNKFLAKIASGYHKPDGLTVIPP 169
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
DR FI++LPI K G+G TE ++ GI T ++L+ T FF
Sbjct: 170 DR--ARDFIAALPIGKFYGVGPATERKMQ-AHGIRTGADLLRFSRQEMVALFGKTGHFFH 226
Query: 188 SVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRT 246
+ GL R RKSI +E T + D A + L ++ + +S + ++ GRT
Sbjct: 227 DIARGLDQRPVQPVRVRKSIGAETTLAEDILDYARVSVVLYQLVQQVSRLLAEKATGGRT 286
Query: 247 LTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELP--VSLRLIGLRVTQF-NE 303
LTLK++ F TR+ T + S++DIL LL A +RL+G+ V NE
Sbjct: 287 LTLKVRYNDFTTITRSSTTPQGFFSAQDILAQLPRLLAATEAGRRRIRLLGVTVANLCNE 346
Query: 304 DKVR 307
+ R
Sbjct: 347 QEAR 350
>gi|417845577|ref|ZP_12491603.1| DNA polymerase IV [Haemophilus haemolyticus M21639]
gi|341954646|gb|EGT81119.1| DNA polymerase IV [Haemophilus haemolyticus M21639]
Length = 355
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 108/308 (35%), Positives = 157/308 (50%), Gaps = 20/308 (6%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG+ +AMP A K CP LI VP + Y S ++F +Y SLDEAYL
Sbjct: 51 ARKFGLHSAMPTAQAIKKCPNLILVPVNMALYKQVSAQIHQIFQRYTDIIEPLSLDEAYL 110
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-P 126
D+T C++ S IA+E+R +++ E LT SAGVAP + LAK+ SD+NKPNGQFV+ P
Sbjct: 111 DVTH-CQKCSGSATWIAQEIRQAIFNELNLTASAGVAPLKFLAKIASDMNKPNGQFVIKP 169
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFF 186
N+ V FI +L + KI G+GKVT L D+ G+ TC ++ ++
Sbjct: 170 NE---VEEFIKTLSLNKIPGVGKVTSQRLLDM-GLETCADIQNFDQIVLLNQFGKAGKRI 225
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTF-----SVTEDKAL---LYRKLAEIAEMLSADMQ 238
G+ R RKS+ E+T ++ + AL LY++L E +S ++
Sbjct: 226 WDFSHGIDDREVQAHRERKSVGVEQTLIENIHTIEQASALLNNLYQELIRRLERVSRNIP 285
Query: 239 KEGLRGRTLTLKLKTASFEVRTRAVT-LQKYISSSEDILKHASVLLKAELPVSLRLIGLR 297
R + +KLK F+V T T L + S + +L + K +RLIGL
Sbjct: 286 LSAF--RKIGVKLKFEDFQVTTLEKTGLPLSLESFQQLLPQIFMRAKGR---KIRLIGLH 340
Query: 298 VTQFNEDK 305
V E+K
Sbjct: 341 VNLPEENK 348
>gi|401425000|ref|XP_003876985.1| putative DNA polymerase kappa [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322493229|emb|CBZ28514.1| putative DNA polymerase kappa [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 463
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 77/192 (40%), Positives = 109/192 (56%), Gaps = 3/192 (1%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR +GVR+ MPGFIA+KLCP L P F Y + R + +YDP+++A LDE +
Sbjct: 34 ARTYGVRSGMPGFIAKKLCPSLWIRPPRFDLYRREAAEVRAIGAQYDPHYVAVGLDELTM 93
Query: 68 DITEVCRERGISGIE-IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP 126
D+T+ R E + E R V E LTCS G+A AK+ S++ KPNGQ +L
Sbjct: 94 DVTDYLRTHPDRSAEDVCAEFRRRVEEATQLTCSGGIAHTAAFAKLASNVKKPNGQHILA 153
Query: 127 -NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADF 185
R V+ ++ +P+R + GIG TE L G+ TC++ L + + LC +F T F
Sbjct: 154 LRTREEVLAYVRDMPVRDVPGIGFATEQRL-HALGVVTCKDFLARKAELCYLFREKTFAF 212
Query: 186 FLSVGLGLGSTN 197
+LSVGLGL T+
Sbjct: 213 YLSVGLGLVRTH 224
>gi|241258700|ref|YP_002978584.1| DNA polymerase IV [Rhizobium leguminosarum bv. trifolii WSM1325]
gi|240863170|gb|ACS60833.1| DNA-directed DNA polymerase [Rhizobium leguminosarum bv. trifolii
WSM1325]
Length = 365
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 103/301 (34%), Positives = 159/301 (52%), Gaps = 11/301 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGV +AMP A++ CP+LIFV F Y S R VF +Y P SLDEAYL
Sbjct: 57 ARKFGVHSAMPSVTAQRKCPDLIFVKPRFDVYKAVSLQIRTVFAEYTPMIEPLSLDEAYL 116
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-P 126
D+TE + I+ EIA E+R + GLT SAG++ N+ LAK+ SD NKP+GQFV+ P
Sbjct: 117 DVTENLKGMEIA-TEIAAEIRAKIKATTGLTASAGISYNKFLAKMASDQNKPDGQFVITP 175
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADF 185
+ A F+ LP++K G+G T ++ + GI T ++ ++ L F S +
Sbjct: 176 KNGPA---FVERLPVKKFHGVGPATAEKMQRL-GIETGADLKERTLDFLVEHFGKS-GPY 230
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRK-LAEIAEMLSADMQKEGLRG 244
F + G+ + R RKSI +E TFS R+ L + + + + +
Sbjct: 231 FYGIARGIDNRQVKPDRVRKSIGAEDTFSQDIHSFEPAREGLQPLISKVWSYCEANEIGA 290
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFN 302
+T+TLK+K A F TR+ T+ + + D+ + +LL P +RL+G+ ++
Sbjct: 291 KTVTLKVKYADFSQITRSKTVPAPLPAITDLDEVVDLLLAPIFPPRKGIRLLGVTLSSLE 350
Query: 303 E 303
+
Sbjct: 351 K 351
>gi|167581305|ref|ZP_02374179.1| DNA polymerase IV [Burkholderia thailandensis TXDOH]
Length = 378
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 112/308 (36%), Positives = 167/308 (54%), Gaps = 27/308 (8%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFGV +AM +A + CP+L+ +P+ KY S L ++ Y P+ SLDEAYL
Sbjct: 55 ARRFGVHSAMSSALAMRKCPDLLILPSAMDKYRAASRLIMAIYRDYTPDVEPLSLDEAYL 114
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-P 126
D++ R G SG IA E+R V + G+T SAGVAPN+ +AK+ SD NKP+G FV+ P
Sbjct: 115 DVSRATRCHG-SGTLIAREIRERVRDTVGVTVSAGVAPNKFIAKIASDWNKPDGLFVVRP 173
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADF- 185
++ V F+++LP+RK+ G+GKVT L D GI TC E L+ SL H F
Sbjct: 174 HE---VDAFVAALPVRKLHGVGKVTAARL-DKLGIRTCSE-LRGWSLF--DLHHEFGAFG 226
Query: 186 --FLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEI---AEMLSADMQKE 240
+ G+ + RKS+S E T+ +D A L + AEI +L A +++
Sbjct: 227 RRLYELARGIDERPVRADQERKSVSVETTY--VQDLATLDQCAAEIRRLTALLDARIERA 284
Query: 241 GLRG--RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGL 296
G R L +K++ A F+ T + ++ + D S+L K A ++RL+G+
Sbjct: 285 GAARSIRKLYVKIRFADFQ-----RTTVECVADATDAETAVSLLAKGLARRKQAVRLLGV 339
Query: 297 RVTQFNED 304
V + +ED
Sbjct: 340 GV-RIDED 346
>gi|418898552|ref|ZP_13452620.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIGC341D]
gi|377758672|gb|EHT82555.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIGC341D]
Length = 346
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 101/301 (33%), Positives = 161/301 (53%), Gaps = 11/301 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++GV +AMP A KLCP FV ++F Y S +F Y SLDEAYL
Sbjct: 40 ARKYGVHSAMPMSQAHKLCPNGYFVTSNFGAYRETSAQIMSIFRSYTDKVEPMSLDEAYL 99
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
DITE+ R + +IA+ +R + E+ LT SAGV+ N+ LAK+ S +NKP+G V+
Sbjct: 100 DITELVRP-DLPASKIAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGMTVI-- 156
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFF 186
D V + +L I G+GK ++ ++ D GI ++ +K L +F +
Sbjct: 157 DYRNVHDILMTLDIGDFPGVGKASKKVMHDN-GIFNGRDLYEKTEFELIRLFGKRGRGLY 215
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRG 244
+ G+ + R RKS+ +ERTF+ V +D+ +L RK+ E++ + + K
Sbjct: 216 -NKARGIDHSEVKSTRVRKSVGTERTFATDVNDDEEIL-RKVWELSGKTAERLNKLQKSA 273
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRVTQFN 302
+T+T+K+KT FE ++ ++L+ +SS EDI A +L + V +RLIG+ V
Sbjct: 274 KTVTVKIKTYQFETLSKQMSLRDSVSSEEDIYNIAYLLYNDLKDPDVPIRLIGVTVGNLE 333
Query: 303 E 303
+
Sbjct: 334 Q 334
>gi|424714844|ref|YP_007015559.1| DNA polymerase IV [Listeria monocytogenes serotype 4b str. LL195]
gi|424014028|emb|CCO64568.1| DNA polymerase IV [Listeria monocytogenes serotype 4b str. LL195]
Length = 368
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 105/301 (34%), Positives = 160/301 (53%), Gaps = 15/301 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGV +AMP A KLCP IF+ + Y S+ R++F +Y SLDEAYL
Sbjct: 63 ARKFGVHSAMPTRQAAKLCPNGIFIHGNMAHYVEVSNQIREIFSRYTDIIEPLSLDEAYL 122
Query: 68 DITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVL 125
D+TE ++G+ S +A E++ ++Y+E GLT SAGV+ N+ +AK+ SD KP G V
Sbjct: 123 DVTE--NKKGMKSATMVAREIQQTIYQELGLTASAGVSFNKFIAKIASDFKKPAGITVVT 180
Query: 126 PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTA 183
P + A F+ +P+ K G+GKVT L + GI T ++ + L+ + H
Sbjct: 181 PEEAEA---FLEQIPVTKFYGVGKVTAEKLHRL-GIETGADLKKWSEWDLIRELHKHGYH 236
Query: 184 DFFLSVGLGLGSTNTPQARFRKSISSERTFSVTE-DKALLYRKLAEIAEMLSADMQKEGL 242
+ G N P R RKS+ E TF D +L + L + A+ + + K
Sbjct: 237 LYRHVRGRSNNIVN-PH-RDRKSVGKETTFEFNVLDSRVLEQSLMQFAKKVEERLIKLQK 294
Query: 243 RGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQ 300
G+T+ LKL+ + F T+ +TL +Y + + I + A++LL+ S+RLIGL VT
Sbjct: 295 HGKTVVLKLRYSDFTTITKRLTLNEYTNDTSQIYQAAALLLRESYTGQDSIRLIGLTVTN 354
Query: 301 F 301
Sbjct: 355 L 355
>gi|187778600|ref|ZP_02995073.1| hypothetical protein CLOSPO_02195 [Clostridium sporogenes ATCC
15579]
gi|187772225|gb|EDU36027.1| ImpB/MucB/SamB family protein [Clostridium sporogenes ATCC 15579]
Length = 349
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 99/309 (32%), Positives = 164/309 (53%), Gaps = 23/309 (7%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++GV +AMP F+A+K CP I+VP +Y S+ K+ K P S+DEAYL
Sbjct: 48 ARKYGVHSAMPVFMAKKKCPFGIYVPGRHNRYREVSNNIFKILYKVTPIIEPVSIDEAYL 107
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
DI+ + +E+ I++A+ ++ V +E GLT S G++ N+ LAK+ SD NKP+G ++
Sbjct: 108 DISHI-KEK---PIKVAKYIKNRVKDEIGLTLSVGISYNKFLAKLASDWNKPDGIKIINK 163
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
D + + LPI KI GIGK + L ++ G+ T +M + C ++F
Sbjct: 164 DMIP--RILMPLPINKIHGIGKKSVEKLHNI-GVFTVADMHKLSKDFC-------IEYFG 213
Query: 188 SVGL-------GLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQK 239
G+ G+ +R RKSI E T +K + + L + + +S ++ K
Sbjct: 214 KFGVEIYDRIRGIDYREVKVSRERKSIGKEITLKKDIINKEEMKKYLLDFSNKISTNLYK 273
Query: 240 EGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHA-SVLLKAELPVSLRLIGLRV 298
G+T+T+K+KT++F+ TR+ T+ Y ++I A +L +RLIGL V
Sbjct: 274 RNSAGKTVTVKIKTSNFKTHTRSKTVNDYTRDKDEIYSIACDILDNINFKEPIRLIGLTV 333
Query: 299 TQFNEDKVR 307
+ E+K++
Sbjct: 334 SNLGENKIK 342
>gi|358052928|ref|ZP_09146734.1| DNA polymerase IV [Staphylococcus simiae CCM 7213]
gi|357257587|gb|EHJ07838.1| DNA polymerase IV [Staphylococcus simiae CCM 7213]
Length = 356
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 103/319 (32%), Positives = 165/319 (51%), Gaps = 17/319 (5%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++GV +AMP A KLCP +V F +Y S +F Y SLDEAYL
Sbjct: 50 ARKYGVHSAMPMSQAHKLCPNGYYVTHRFGEYRKISQQIMAIFRSYTDKVEPMSLDEAYL 109
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
DIT++ R + +IA+ +R + E+ LT SAGV+ N+ LAK+ S +NKPNG V+
Sbjct: 110 DITDLVRP-DLPASQIAQYIRRDILEQTALTASAGVSYNKFLAKLASGMNKPNGMTVI-- 166
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFF 186
D V I SL I G+GK ++ ++ D I T +++ QK L +F +
Sbjct: 167 DYNNVHDIIMSLDIGDFPGVGKASKKVMHDN-DIYTGQDLYQKSEFELIRLFGKRGRGLY 225
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRG 244
+ G+ + +R RKSI +ERTF+ V +D+ +L RK+ E++ + + +
Sbjct: 226 -NKARGIDHSEVKSSRIRKSIGTERTFATDVNDDEQIL-RKVWELSGKTAERLNELQKSA 283
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRVTQFN 302
+T+T+K+KT FE ++ +L+ +++ DI A L + + +RLIG+ V
Sbjct: 284 KTVTVKIKTYQFETYSKQTSLRDSVNTENDIYNIAYALYNELKDPDIPIRLIGVTVGNLE 343
Query: 303 EDKVRAPSDPTQKTLTNFM 321
PS T+ +F+
Sbjct: 344 ------PSSYKNMTIYDFI 356
>gi|293550615|ref|ZP_06673283.1| DNA polymerase IV [Enterococcus faecium E1039]
gi|431444918|ref|ZP_19513647.1| DNA polymerase IV [Enterococcus faecium E1630]
gi|291603236|gb|EFF33420.1| DNA polymerase IV [Enterococcus faecium E1039]
gi|430586080|gb|ELB24346.1| DNA polymerase IV [Enterococcus faecium E1630]
Length = 373
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 104/309 (33%), Positives = 164/309 (53%), Gaps = 29/309 (9%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG+ +AM A +LCP+ IF P D KY+ S R+VF +Y S+DEAYL
Sbjct: 63 ARKFGIHSAMSAQKAYELCPQAIFKPGDHHKYSDISKQVREVFYRYTDIVEPVSIDEAYL 122
Query: 68 DITEV---CRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QF 123
D+TE C+ S I+IA ++ +++E LTCSAGV+ N+ LAK+ SD KP G
Sbjct: 123 DVTENKINCK----SAIKIARMIQANIWESVQLTCSAGVSYNKFLAKLASDYQKPRGITV 178
Query: 124 VLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINT------CEEMLQKGSLLCAV 177
V P D + F+ +LPI K G+GK T + ++ GI T C EM+ L
Sbjct: 179 VAPQD---AVPFLKALPIEKFHGVGKKTVPRMHEL-GIYTGKDLYECTEMM-----LIRN 229
Query: 178 FSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSA 235
F + V G+ + R RKS+ E T+ + ++A+L +L ++AE +
Sbjct: 230 FGKMGYSLYRKVR-GIHDSPVNVTRERKSVGKEHTYGQPLQTEEAVL-TQLRQLAEKVEE 287
Query: 236 DMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRL 293
+++ G+T+ LK++ + T+ VTL +YI E + AS++ + L V +RL
Sbjct: 288 ALRRVQKHGKTVVLKVRYTDYSTVTKRVTLPEYIYKKEALFYQASLIWEEILGVEKGIRL 347
Query: 294 IGLRVTQFN 302
+G+ +T +
Sbjct: 348 LGITLTNLD 356
>gi|423098874|ref|ZP_17086582.1| putative DNA polymerase IV [Listeria innocua ATCC 33091]
gi|370794701|gb|EHN62464.1| putative DNA polymerase IV [Listeria innocua ATCC 33091]
Length = 356
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 105/301 (34%), Positives = 159/301 (52%), Gaps = 15/301 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGV +AMP A KLCP IF+ + Y S+ R++F +Y SLDEAYL
Sbjct: 51 ARKFGVHSAMPTRQAAKLCPNGIFIHGNMAHYVEVSNQIREIFSRYTDIIEPLSLDEAYL 110
Query: 68 DITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVL 125
D+TE ++G+ S +A E++ ++Y E GLT SAGV+ N+ +AK+ SD KP G V
Sbjct: 111 DVTE--NKKGMKSATMVAREIQQTIYRELGLTASAGVSFNKFIAKIASDFKKPAGITVVT 168
Query: 126 PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTA 183
P + A F+ +P+ K G+GKVT L + GI T ++ + L+ + H
Sbjct: 169 PEEAEA---FLEQIPVTKFYGVGKVTAEKLHRL-GIKTGADLKKWSEWDLIRELHKHGYH 224
Query: 184 DFFLSVGLGLGSTNTPQARFRKSISSERTFSVTE-DKALLYRKLAEIAEMLSADMQKEGL 242
+ G N P R RKS+ E TF D +L + L + A+ + + K
Sbjct: 225 LYRHVRGRSNNIVN-PH-RDRKSVGKETTFEFNVLDSRILEQSLMQFAKKVEERLIKLQK 282
Query: 243 RGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQ 300
G+T+ LKL+ + F T+ +TL +Y + + I + A++LL+ S+RLIGL VT
Sbjct: 283 HGKTVVLKLRYSDFTTITKRLTLNEYTNDANQIYQAAALLLRESYTGQDSIRLIGLTVTN 342
Query: 301 F 301
Sbjct: 343 L 343
>gi|430853560|ref|ZP_19471288.1| DNA polymerase IV [Enterococcus faecium E1258]
gi|430540641|gb|ELA80843.1| DNA polymerase IV [Enterococcus faecium E1258]
Length = 372
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 101/304 (33%), Positives = 164/304 (53%), Gaps = 19/304 (6%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG+ +AM A +LCP+ IF P D KY+ S R+VF +Y S+DEAYL
Sbjct: 62 ARKFGIHSAMSAQKAYELCPQAIFKPGDHHKYSDISKQVREVFYRYTDIVEPVSIDEAYL 121
Query: 68 DITEV---CRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QF 123
D+TE C+ S I+IA ++ ++E LTCSAGV+ N+ LAK+ SD KP G
Sbjct: 122 DVTENKINCK----SAIKIARMIQADIWESVQLTCSAGVSYNKFLAKLASDYQKPRGITV 177
Query: 124 VLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHST 182
V P D + F+ +LPI K G+GK T + ++ GI T +++ + +L F
Sbjct: 178 VAPQD---AVPFLKALPIEKFHGVGKKTVPRMHEL-GIYTGKDLYECTEMMLIRNFGKMG 233
Query: 183 ADFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKE 240
+ V G+ + R RKS+ E T+ + ++A+L +L ++AE + +++
Sbjct: 234 YSLYRKVR-GIHDSPVNVTRERKSVGKEHTYGQPLQTEEAVL-TQLRQLAEKVEEALRRV 291
Query: 241 GLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRV 298
G+T+ LK++ + T+ VTL +YI E + AS++ + L V +RL+G+ +
Sbjct: 292 QKHGKTVVLKVRYTDYSTVTKRVTLPEYIYKKEALFYQASLIWEEVLGVEKGIRLLGITL 351
Query: 299 TQFN 302
T +
Sbjct: 352 TNLD 355
>gi|418636789|ref|ZP_13199128.1| ImpB/MucB/SamB family protein [Staphylococcus lugdunensis VCU139]
gi|374840485|gb|EHS03978.1| ImpB/MucB/SamB family protein [Staphylococcus lugdunensis VCU139]
Length = 359
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 102/297 (34%), Positives = 161/297 (54%), Gaps = 13/297 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++GV +AMP A KLCP+ +V + KY S+ +F Y SLDEAYL
Sbjct: 50 ARKYGVHSAMPMSQAHKLCPDGYYVQGQYEKYRTISNEIMSIFRSYTEAVEPMSLDEAYL 109
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
DIT + R + +IA +R +YE+ LT SAGV+ N+ LAK+ S +NKPNG V+
Sbjct: 110 DITHLVRP-DLPASQIANYIRRDIYEKTHLTASAGVSYNKFLAKLASGMNKPNGMTVI-- 166
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFF 186
D V + +L I G+GK +E I+ GI +++ QK L +F +
Sbjct: 167 DYENVHKILMALDIGDFPGVGKASEKIMHK-HGIYNGQDLYQKDVFELVRLFGKRGRGLY 225
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRG 244
+ G+ + +R RKS+ +ERTF+ V +D +L +K+ E++ + + K
Sbjct: 226 -NKARGIDDSPVKSSRIRKSVGTERTFATDVNDDDEIL-QKMWELSGKTAERLNKLQKSA 283
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELP---VSLRLIGLRV 298
+T+T+K+KT FE ++ ++L+ I S DI + + +L AEL + +RLIG+ V
Sbjct: 284 KTVTVKIKTFKFETLSKQMSLRDPIRSETDIY-NIAYMLYAELKDPEMPIRLIGVTV 339
>gi|223932767|ref|ZP_03624765.1| DNA-directed DNA polymerase [Streptococcus suis 89/1591]
gi|302023273|ref|ZP_07248484.1| DNA polymerase IV [Streptococcus suis 05HAS68]
gi|330832046|ref|YP_004400871.1| DNA polymerase IV [Streptococcus suis ST3]
gi|386583321|ref|YP_006079724.1| DNA polymerase IV [Streptococcus suis D9]
gi|223898600|gb|EEF64963.1| DNA-directed DNA polymerase [Streptococcus suis 89/1591]
gi|329306269|gb|AEB80685.1| DNA polymerase IV [Streptococcus suis ST3]
gi|353735467|gb|AER16476.1| DNA polymerase IV [Streptococcus suis D9]
Length = 355
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 102/312 (32%), Positives = 168/312 (53%), Gaps = 35/312 (11%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FG+ +AM A + CP+ IF+ ++ KY R++F +Y S+DEAYL
Sbjct: 61 ARAFGIHSAMSSKEAYECCPQAIFISGNYEKYQEVGRQVREIFHRYTDLVEPMSIDEAYL 120
Query: 68 DITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVL 125
D+TE + GI S ++IA+ ++ ++ E LT SAGV+ N+ LAK+ SD+ KP G +L
Sbjct: 121 DVTE--NKLGISSAVKIAKLIQYDIWNELHLTASAGVSYNKFLAKIASDMEKPYGLTLIL 178
Query: 126 PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADF 185
P D + ++ +SLP+ K G+GK T L ++ G+ T +++L ++ D
Sbjct: 179 PEDAVGIL---ASLPVEKFHGVGKKTVERLHEM-GVYTGQDLLDVPEMVL-------IDR 227
Query: 186 FLSVGLGL-----GSTNTPQA--RFRKSISSERTFSVTEDKALLYR------KLAEIAEM 232
F G L G +N+P R RKSI ERT+ + LLYR +L + +
Sbjct: 228 FGRFGFDLYRKARGISNSPVKVDRVRKSIGKERTY-----RKLLYREEDVLKELISLCQR 282
Query: 233 LSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVS 290
++A +++ G +GRT+ LK++ F T+ +L+ Y +E I K L++ ++
Sbjct: 283 VAASLKRNGKKGRTIVLKVRYGDFSTLTKRHSLEVYTDQTETIEKEVRQLIEEIGKIEKG 342
Query: 291 LRLIGLRVTQFN 302
+RL+G+ VT F
Sbjct: 343 IRLLGVTVTNFQ 354
>gi|91223441|ref|ZP_01258706.1| DNA polymerase IV [Vibrio alginolyticus 12G01]
gi|91191527|gb|EAS77791.1| DNA polymerase IV [Vibrio alginolyticus 12G01]
Length = 356
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 115/315 (36%), Positives = 161/315 (51%), Gaps = 32/315 (10%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++GVR+AM A +LCP L+ VP Y S R +F +Y P SLDEAYL
Sbjct: 54 ARKYGVRSAMSTARALQLCPHLLVVPGRMHVYKQVSQQIRAIFERYTPIIEPLSLDEAYL 113
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T+ RG S IAE +R ++ E GLT SAG+AP + LAKV SD+NKPNGQFV+P
Sbjct: 114 DVTDSTACRG-SATLIAESIRRDIWSELGLTASAGIAPIKFLAKVASDMNKPNGQFVIPP 172
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFF 186
++ V I SLP+ I G+GKV+ L G CE++ L F A +
Sbjct: 173 EK--VQEVIDSLPLENIPGVGKVSLEKLHQA-GFYRCEDIKNSDYRELLRQFGRQGASLW 229
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFS-----------VTEDKALLYRKLAEIAEMLSA 235
G+ + R RKS+ ERTFS V E+K LY +L + E S
Sbjct: 230 -QRSHGIDNREVVVERERKSVGVERTFSQNIATYDECWQVIEEK--LYPELEKRLERASP 286
Query: 236 D--MQKEGLRGRTLTLKLKTASFEVRT-RAVTLQKYISSSEDILKHASVLLKAELPVSLR 292
D + K+G +K+K A F++ T + Q + + +L+ +LK + +R
Sbjct: 287 DKSIIKQG-------IKVKFADFQLTTIEHIHPQLELEDFKILLRD---ILKRQNGREIR 336
Query: 293 LIGLRVTQFNEDKVR 307
L+GL V ED+ R
Sbjct: 337 LLGLNVMLKPEDQAR 351
>gi|167619388|ref|ZP_02388019.1| DNA polymerase IV [Burkholderia thailandensis Bt4]
Length = 378
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 112/308 (36%), Positives = 167/308 (54%), Gaps = 27/308 (8%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFGV +AM +A + CP+L+ +P+ KY S L ++ Y P+ SLDEAYL
Sbjct: 55 ARRFGVHSAMSSALAMRKCPDLLILPSAMDKYRAASRLIMAIYRDYTPDVEPLSLDEAYL 114
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-P 126
D++ R G SG IA E+R V + G+T SAGVAPN+ +AK+ SD NKP+G FV+ P
Sbjct: 115 DVSRATRCHG-SGTLIAREIRERVRDTVGVTVSAGVAPNKFIAKIASDWNKPDGLFVVRP 173
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADF- 185
++ V F+++LP+RK+ G+GKVT L D GI TC E L+ SL H F
Sbjct: 174 HE---VDAFVAALPVRKLHGVGKVTAARL-DKLGIRTCSE-LRGWSLF--DLHHEFGAFG 226
Query: 186 --FLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEI---AEMLSADMQKE 240
+ G+ + RKS+S E T+ +D A L + AEI +L A +++
Sbjct: 227 RRLYELARGIDERPVRADQERKSVSVETTY--VQDLATLDQCAAEIRRLTALLDARIERA 284
Query: 241 GLRG--RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGL 296
G R L +K++ A F+ T + ++ + D S+L K A ++RL+G+
Sbjct: 285 GAARSIRKLYVKVRFADFQ-----RTTVECVADATDAETAVSLLAKGLARRKQAVRLLGV 339
Query: 297 RVTQFNED 304
V + +ED
Sbjct: 340 GV-RIDED 346
>gi|161723133|ref|YP_442389.2| DNA polymerase IV [Burkholderia thailandensis E264]
Length = 392
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 112/308 (36%), Positives = 167/308 (54%), Gaps = 27/308 (8%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFGV +AM +A + CP+L+ +P+ KY S L ++ Y P+ SLDEAYL
Sbjct: 69 ARRFGVHSAMSSALAMRKCPDLLILPSAMDKYRAASRLIMAIYRDYTPDVEPLSLDEAYL 128
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-P 126
D++ R G SG IA E+R V + G+T SAGVAPN+ +AK+ SD NKP+G FV+ P
Sbjct: 129 DVSRATRCHG-SGTLIAREIRERVRDTVGVTVSAGVAPNKFIAKIASDWNKPDGLFVVRP 187
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADF- 185
++ V F+++LP+RK+ G+GKVT L D GI TC E L+ SL H F
Sbjct: 188 HE---VDAFVAALPVRKLHGVGKVTAARL-DKLGIRTCSE-LRGWSLF--DLHHEFGAFG 240
Query: 186 --FLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEI---AEMLSADMQKE 240
+ G+ + RKS+S E T+ +D A L + AEI +L A +++
Sbjct: 241 RRLYELARGIDERPVRADQERKSVSVETTY--VQDLATLDQCAAEIRRLTALLDARIERA 298
Query: 241 GLRG--RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGL 296
G R L +K++ A F+ T + ++ + D S+L K A ++RL+G+
Sbjct: 299 GAARSIRKLYVKIRFADFQ-----RTTVECVADATDAETAVSLLAKGLARRKQAVRLLGV 353
Query: 297 RVTQFNED 304
V + +ED
Sbjct: 354 GV-RIDED 360
>gi|386729583|ref|YP_006195966.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 71193]
gi|418311480|ref|ZP_12923003.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 21331]
gi|418980100|ref|ZP_13527887.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus DR10]
gi|365234136|gb|EHM75076.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 21331]
gi|379992131|gb|EIA13589.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus DR10]
gi|384230876|gb|AFH70123.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 71193]
Length = 356
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 101/301 (33%), Positives = 161/301 (53%), Gaps = 11/301 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++GV +AMP A KLCP FV ++F Y S +F Y SLDEAYL
Sbjct: 50 ARKYGVHSAMPMSQAHKLCPNGYFVTSNFGAYRETSAQIMSIFRSYTDKVEPMSLDEAYL 109
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
DITE+ R + +IA+ +R + E+ LT SAGV+ N+ LAK+ S +NKP+G V+
Sbjct: 110 DITELVRP-DLPASKIAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGMTVI-- 166
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFF 186
D V + +L I G+GK ++ ++ D GI ++ +K L +F +
Sbjct: 167 DYRNVHDILMTLDIGDFPGVGKASKKVMHDN-GIFNGRDLYEKTEFELIRLFGKRGRGLY 225
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRG 244
+ G+ + R RKS+ +ERTF+ V +D+ +L RK+ E++ + + K
Sbjct: 226 -NKARGIDHSEVKSTRVRKSVGTERTFATDVNDDEEIL-RKVWELSGKTAERLNKLQKSA 283
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRVTQFN 302
+T+T+K+KT FE ++ ++L+ +SS EDI A +L + V +RLIG+ V
Sbjct: 284 KTVTVKIKTYQFETLSKQMSLRDSVSSEEDIYNIAYLLYNDLKDPDVPIRLIGVTVGNLE 343
Query: 303 E 303
+
Sbjct: 344 Q 344
>gi|422413513|ref|ZP_16490472.1| DNA polymerase IV [Listeria innocua FSL S4-378]
gi|313618089|gb|EFR90198.1| DNA polymerase IV [Listeria innocua FSL S4-378]
Length = 356
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 105/301 (34%), Positives = 159/301 (52%), Gaps = 15/301 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGV +AMP A KLCP IF+ + Y S+ R++F +Y SLDEAYL
Sbjct: 51 ARKFGVHSAMPTRQAAKLCPNGIFIHGNMAHYVEVSNQIREIFSRYTDIIEPLSLDEAYL 110
Query: 68 DITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVL 125
D+TE ++G+ S +A E++ ++Y E GLT SAGV+ N+ +AK+ SD KP G V
Sbjct: 111 DVTE--NKKGMKSATMVAREIQQTIYREIGLTASAGVSFNKFIAKIASDFKKPAGITVVA 168
Query: 126 PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTA 183
P + A F+ +P+ K G+GKVT L + GI T ++ + L+ + H
Sbjct: 169 PEEAEA---FLEQIPVTKFYGVGKVTAEKLHRL-GIETGADLKKWSEWDLIRELHKHGYQ 224
Query: 184 DFFLSVGLGLGSTNTPQARFRKSISSERTFSVTE-DKALLYRKLAEIAEMLSADMQKEGL 242
+ G N P R RKS+ E TF D +L + L + A+ + + K
Sbjct: 225 LYRHVRGRSNNIVN-PH-RDRKSVGKETTFEFNVLDNRILEQSLMKFAKKVEERLIKLQK 282
Query: 243 RGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQ 300
G+T+ LKL+ + F T+ +TL +Y + + I + A++LL+ S+RLIGL VT
Sbjct: 283 HGKTVVLKLRYSDFTTITKRLTLNEYTNDANQIYQAAALLLRESYKGQDSIRLIGLTVTN 342
Query: 301 F 301
Sbjct: 343 L 343
>gi|49484136|ref|YP_041360.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus MRSA252]
gi|257426027|ref|ZP_05602449.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
55/2053]
gi|257428700|ref|ZP_05605095.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
65-1322]
gi|257431310|ref|ZP_05607686.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
68-397]
gi|257436932|ref|ZP_05612974.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
M876]
gi|282904526|ref|ZP_06312411.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus C160]
gi|282906299|ref|ZP_06314151.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus Btn1260]
gi|282909215|ref|ZP_06317031.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
WW2703/97]
gi|282911520|ref|ZP_06319320.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
WBG10049]
gi|282914693|ref|ZP_06322478.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus M899]
gi|282919730|ref|ZP_06327462.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus C427]
gi|282925134|ref|ZP_06332794.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus C101]
gi|283958656|ref|ZP_06376102.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus A017934/97]
gi|293507770|ref|ZP_06667612.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 58-424]
gi|293510787|ref|ZP_06669489.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
M809]
gi|293539327|ref|ZP_06672006.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus M1015]
gi|295428477|ref|ZP_06821104.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus EMRSA16]
gi|297590052|ref|ZP_06948692.1| DNA-directed DNA polymerase IV [Staphylococcus aureus subsp. aureus
MN8]
gi|384867134|ref|YP_005747330.1| DNA-directed DNA polymerase IV [Staphylococcus aureus subsp. aureus
TCH60]
gi|387603227|ref|YP_005734748.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus ST398]
gi|404479241|ref|YP_006710671.1| DNA polymerase IV [Staphylococcus aureus 08BA02176]
gi|415684801|ref|ZP_11449864.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
CGS00]
gi|417886924|ref|ZP_12531064.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 21195]
gi|418565646|ref|ZP_13130043.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21264]
gi|418581874|ref|ZP_13145954.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1605]
gi|418596890|ref|ZP_13160434.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21342]
gi|418600790|ref|ZP_13164241.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21345]
gi|418892785|ref|ZP_13446894.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1176]
gi|418900449|ref|ZP_13454507.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1214]
gi|418909822|ref|ZP_13463813.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG149]
gi|418917922|ref|ZP_13471878.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1267]
gi|418923666|ref|ZP_13477579.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1233]
gi|418982961|ref|ZP_13530666.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1242]
gi|418985616|ref|ZP_13533303.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1500]
gi|81650794|sp|Q6GFG2.1|DPO4_STAAR RecName: Full=DNA polymerase IV; Short=Pol IV
gi|49242265|emb|CAG40972.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
MRSA252]
gi|257271170|gb|EEV03327.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
55/2053]
gi|257274344|gb|EEV05856.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
65-1322]
gi|257277959|gb|EEV08615.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
68-397]
gi|257283721|gb|EEV13846.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
M876]
gi|282313092|gb|EFB43490.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus C101]
gi|282316368|gb|EFB46745.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus C427]
gi|282321407|gb|EFB51733.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus M899]
gi|282324529|gb|EFB54841.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
WBG10049]
gi|282326783|gb|EFB57080.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
WW2703/97]
gi|282330496|gb|EFB60013.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus Btn1260]
gi|282595082|gb|EFC00049.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus C160]
gi|283471165|emb|CAQ50376.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus ST398]
gi|283789696|gb|EFC28518.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus A017934/97]
gi|290919862|gb|EFD96931.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus M1015]
gi|291094833|gb|EFE25101.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 58-424]
gi|291466418|gb|EFF08942.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
M809]
gi|295127459|gb|EFG57098.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus EMRSA16]
gi|297577180|gb|EFH95894.1| DNA-directed DNA polymerase IV [Staphylococcus aureus subsp. aureus
MN8]
gi|312437639|gb|ADQ76710.1| DNA-directed DNA polymerase IV [Staphylococcus aureus subsp. aureus
TCH60]
gi|315193424|gb|EFU23821.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
CGS00]
gi|341858556|gb|EGS99345.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 21195]
gi|371972901|gb|EHO90269.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21264]
gi|374396472|gb|EHQ67709.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21342]
gi|374400687|gb|EHQ71795.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21345]
gi|377702813|gb|EHT27131.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1242]
gi|377704176|gb|EHT28487.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1214]
gi|377706296|gb|EHT30595.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1500]
gi|377711424|gb|EHT35657.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1605]
gi|377729387|gb|EHT53482.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1176]
gi|377733260|gb|EHT57305.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1233]
gi|377749229|gb|EHT73180.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1267]
gi|377750768|gb|EHT74705.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG149]
gi|404440730|gb|AFR73923.1| DNA polymerase IV [Staphylococcus aureus 08BA02176]
Length = 356
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 101/301 (33%), Positives = 161/301 (53%), Gaps = 11/301 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++GV +AMP A KLCP FV ++F Y S +F Y SLDEAYL
Sbjct: 50 ARKYGVHSAMPMSQAHKLCPNGYFVTSNFGAYRETSAQIMSIFRSYTDKVEPMSLDEAYL 109
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
DITE+ R + +IA+ +R + E+ LT SAGV+ N+ LAK+ S +NKP+G V+
Sbjct: 110 DITELVRP-DLPASKIAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGMTVI-- 166
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFF 186
D V + +L I G+GK ++ ++ D GI ++ +K L +F +
Sbjct: 167 DYRNVHDILMTLDIGDFPGVGKASKKVMHDN-GIFNGRDLYEKTEFELIRLFGKRGRGLY 225
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRG 244
+ G+ + R RKS+ +ERTF+ V +D+ +L RK+ E++ + + K
Sbjct: 226 -NKARGIDHSEVKSTRVRKSVGTERTFATDVNDDEEIL-RKVWELSGKTAERLNKLQKSA 283
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRVTQFN 302
+T+T+K+KT FE ++ ++L+ +SS EDI A +L + V +RLIG+ V
Sbjct: 284 KTVTVKIKTYQFETLSKQMSLRDSVSSEEDIYNIAYLLYNDLKDPDVPIRLIGVTVGNLE 343
Query: 303 E 303
+
Sbjct: 344 Q 344
>gi|281492632|ref|YP_003354612.1| DNA polymerase IV [Lactococcus lactis subsp. lactis KF147]
gi|281376296|gb|ADA65787.1| DNA polymerase IV [Lactococcus lactis subsp. lactis KF147]
Length = 364
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 102/310 (32%), Positives = 167/310 (53%), Gaps = 24/310 (7%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FG+ +AM A LCP+ IF+ ++ KYT S R++F +Y + AAS+DEAYL
Sbjct: 61 ARAFGIHSAMSAKEAYDLCPQAIFISGNYEKYTKVSKQVREIFKRYTDDIEAASIDEAYL 120
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLP 126
D+TE + S I+IA+ ++ ++ E GLTCSAGV+ N+ LAK+ SD KP+G ++P
Sbjct: 121 DVTE-NKIGAQSAIKIAKLIQHDIFVELGLTCSAGVSYNKFLAKIASDYEKPHGLTLIMP 179
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL--LCAVFSHSTAD 184
+ + F++ LP+ K G+GK T L + N + LQK L F +
Sbjct: 180 EE---ALEFLAKLPVEKFHGVGKATVPKLHALGFFNGGD--LQKADPVDLAERFGVYGWE 234
Query: 185 FFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLY------RKLAEIAEMLSADMQ 238
+ G+ ++ R RKS+ ERT+ LLY +L++I+ +S ++
Sbjct: 235 LYQKAN-GIHNSKVKNYRERKSVGKERTYG-----KLLYLPDDIKAELSKISGKVSDSLK 288
Query: 239 KEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL---LKAELPVSLRLIG 295
L+G + LKL+ + F T+ +L + + S E+I + A + L+ + + +RL+G
Sbjct: 289 SHQLKGSIVILKLRYSDFTTLTKRKSLAEKLESPEEIAEVAQEIFEELEYDESLGVRLLG 348
Query: 296 LRVTQFNEDK 305
+ VT+F K
Sbjct: 349 VTVTEFGVQK 358
>gi|253990696|ref|YP_003042052.1| DNA polymerase IV (DNA-damage-inducible protein P) [Photorhabdus
asymbiotica]
gi|253782146|emb|CAQ85310.1| DNA polymerase IV (DNA-damage-inducible protein P) [Photorhabdus
asymbiotica]
Length = 357
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 94/260 (36%), Positives = 139/260 (53%), Gaps = 13/260 (5%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFGV +AMP +A KLCP+L +P Y S R++F +Y SLDEAYL
Sbjct: 54 ARRFGVHSAMPTAMALKLCPQLKVLPGRMALYKEVSQNIRQIFSRYTEWIEPLSLDEAYL 113
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T+ C S IA+E+R S+++E LT SAG+AP + LAK+ SDINKPNGQ+V+P
Sbjct: 114 DVTD-CHHCYGSATLIAQEIRKSIFDELQLTASAGIAPVKFLAKIASDINKPNGQYVIPP 172
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
DR+A F+ LP+ KI G+GKV L ++ G+ TC ++ + ++
Sbjct: 173 DRVA--DFVKVLPLGKIPGVGKVMVQRLTNM-GLETCSDVQKYDVIVLVKQLGKFGQVLW 229
Query: 188 SVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKE------G 241
G+ R RKSI E+T + + + + E+ E L +++K
Sbjct: 230 DRCHGIDERLVNPDRLRKSIGVEQTLAKDIHQ---WEQCTELIESLYLELEKRLSNVKPD 286
Query: 242 LRGRTLTLKLKTASFEVRTR 261
LR +KLK F++ T+
Sbjct: 287 LRIARQGVKLKFEDFQLTTQ 306
>gi|168187738|ref|ZP_02622373.1| DNA polymerase IV [Clostridium botulinum C str. Eklund]
gi|169294384|gb|EDS76517.1| DNA polymerase IV [Clostridium botulinum C str. Eklund]
Length = 347
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 101/305 (33%), Positives = 165/305 (54%), Gaps = 17/305 (5%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVF---CKYDPNFMAASLDE 64
AR++G+R+AMP + A+ LCP +F+PT ++ Y +++RKVF K S+DE
Sbjct: 48 ARKYGIRSAMPVYKAKALCPSAVFLPT---RHYRYKEISRKVFEILSKVTNKIEQVSIDE 104
Query: 65 AYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFV 124
AYLDIT + ++ ++A ++ + E GLT S G++ N+ LAK+ SD NKP+G +
Sbjct: 105 AYLDITNI----NMNPKDLAVNIKNMIKENMGLTISVGISYNKFLAKLASDWNKPDGLKI 160
Query: 125 LPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHSTA 183
+ D + + L I K+ GIG+ + L ++ GI T +++ L F
Sbjct: 161 ITKDMIP--DILMPLSINKVHGIGRKSAKKLNNI-GIFTVKQLYTLPKKLFYEYFGKFGL 217
Query: 184 DFFLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGL 242
D + + G+ + R +KSI E T T+DK L + L A + + +
Sbjct: 218 DIYNRIR-GIDNREVITVREQKSIGKETTLKKDTKDKDELKKFLWIFAINIEEKLTTSNV 276
Query: 243 RGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKA-ELPVSLRLIGLRVTQF 301
+G+T+TLK+KTA FE TR+ +L KYISS ++I K A +L + E +RLIG ++
Sbjct: 277 KGKTITLKIKTAYFENHTRSKSLDKYISSRQEIYKVACAILDSIEFSEKIRLIGTSISSL 336
Query: 302 NEDKV 306
+ +V
Sbjct: 337 KDVEV 341
>gi|418563747|ref|ZP_13128181.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21262]
gi|371970362|gb|EHO87784.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21262]
Length = 356
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 100/301 (33%), Positives = 162/301 (53%), Gaps = 11/301 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++GV +AMP A KLCP FV ++F Y S +F Y SLDEAYL
Sbjct: 50 ARKYGVHSAMPMSQAHKLCPNGYFVTSNFGAYRETSAQIMSIFRSYTDKVEPMSLDEAYL 109
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
DITE+ R + +IA+ +R + E+ LT SAGV+ N+ LAK+ S +NKP+G V+
Sbjct: 110 DITELVRP-DLPASKIAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGMTVI-- 166
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFF 186
D V + +L I G+GK ++ ++ D GI ++ +K L +F +
Sbjct: 167 DYQNVHDILMTLDIGDFPGVGKASKKVMHDN-GIFNGRDLYEKTEFELIRLFGKRGRGLY 225
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRG 244
+ G+ + +R RKS+ +ERTF+ + +D+ +L RK+ E++ + + K
Sbjct: 226 -NKARGIDHSEVKSSRVRKSVGTERTFATDMNDDEEIL-RKVWELSGKTAERLNKLQKSA 283
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRVTQFN 302
+T+T+K+KT FE ++ ++L+ +SS EDI A +L + V +RLIG+ V
Sbjct: 284 KTVTVKIKTYQFETLSKQMSLRDSVSSEEDIYNIAYLLYNDLKDPDVPIRLIGVTVGNLE 343
Query: 303 E 303
+
Sbjct: 344 Q 344
>gi|290476280|ref|YP_003469184.1| DNA polymerase IV [Xenorhabdus bovienii SS-2004]
gi|289175617|emb|CBJ82420.1| DNA polymerase IV, devoid of proofreading, damage-inducible protein
P [Xenorhabdus bovienii SS-2004]
Length = 370
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 98/262 (37%), Positives = 145/262 (55%), Gaps = 17/262 (6%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FGVR+AM +A KLCP+L +P Y S R++F +Y SLDEAYL
Sbjct: 67 ARLFGVRSAMSTAMALKLCPQLKVIPGRMASYKEVSQHIRQIFSRYTELIEPLSLDEAYL 126
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T+ C+ S IA+++R +++E LT SAGVAP R LAK+ SDINKPNGQ+V+
Sbjct: 127 DVTD-CQHCHGSATLIAQQIRQVIFDELQLTASAGVAPIRFLAKIASDINKPNGQYVISP 185
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADF 185
+++ V F+ SLP+RKI G+GKVT L D+ G+ TC ++ K +L+ + A +
Sbjct: 186 EQVEV--FVKSLPLRKIPGVGKVTSKRLSDM-GLETCADVQNYDKVALIKKLGKFGLALW 242
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKE----- 240
S G+ R RKS+ E+T + + +R E+ E L +++K
Sbjct: 243 ERS--HGIDDRQISPDRLRKSVGVEKTLAQDIHE---WRDCVELIEKLYPELEKRLGKVK 297
Query: 241 -GLRGRTLTLKLKTASFEVRTR 261
LR +KLK F++ T+
Sbjct: 298 PDLRIARQGIKLKFDDFQLTTQ 319
>gi|421107022|ref|ZP_15567582.1| ImpB/MucB/SamB family protein [Leptospira kirschneri str. H2]
gi|410007936|gb|EKO61615.1| ImpB/MucB/SamB family protein [Leptospira kirschneri str. H2]
Length = 362
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 100/309 (32%), Positives = 167/309 (54%), Gaps = 18/309 (5%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR+AMP A +L P IFV F Y S R++F +Y SLDE YL
Sbjct: 50 ARKFGVRSAMPCSKAAQLAPNAIFVLPRFEVYKEVSKQIREIFLEYTDLVEMLSLDEGYL 109
Query: 68 DITEVCRERGIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVL 125
D+T ++ IS + IA+E+R +++ GLT SAGV+ ++ ++K+ S+ NKPNG VL
Sbjct: 110 DVT--FNKKNISFAVTIAKEIRAEIFKRTGLTASAGVSNSKFISKLASEKNKPNGLTVVL 167
Query: 126 PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADF 185
P+D V++FI LP+ G+GKVT ++++ GI T +++ K +
Sbjct: 168 PDD---VISFIDPLPVSSFHGVGKVTSRKMKEL-GIYTGKDLRTKNIEELVQHFGKMGIY 223
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSVTE-DKALLYRKLAEIAEMLSADMQKEGLRG 244
+ + G +R RKS+ +E TF + D L ++L ++A ++ ++K+ G
Sbjct: 224 YYKISRGEDERMVESSRERKSLGAEYTFDQDKLDYNDLLKRLKDVAVIVERRLEKKDFAG 283
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL---------KAELPVSLRLIG 295
+TLTLK+K F ++TR+ TL + I + ++ A+ L K ++RL+G
Sbjct: 284 KTLTLKIKFYDFSLKTRSKTLSEPIFKANELYSTAAELFEEFFETKYGKKSAIKAIRLLG 343
Query: 296 LRVTQFNED 304
+ ++ N +
Sbjct: 344 ISLSHPNSE 352
>gi|451970837|ref|ZP_21924061.1| DNA polymerase IV [Vibrio alginolyticus E0666]
gi|451933254|gb|EMD80924.1| DNA polymerase IV [Vibrio alginolyticus E0666]
Length = 356
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 115/315 (36%), Positives = 161/315 (51%), Gaps = 32/315 (10%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++GVR+AM A +LCP L+ VP Y S R +F +Y P SLDEAYL
Sbjct: 54 ARKYGVRSAMSTARALQLCPHLLVVPGRMHVYKQVSQQIRAIFERYTPIIEPLSLDEAYL 113
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T+ RG S IAE +R ++ E GLT SAG+AP + LAKV SD+NKPNGQFV+P
Sbjct: 114 DVTDSTACRG-SATLIAESIRRDIWSELGLTASAGIAPIKFLAKVASDMNKPNGQFVIPP 172
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFF 186
++ V I SLP+ I G+GKV+ L G CE++ L F A +
Sbjct: 173 EK--VQEVIDSLPLENIPGVGKVSLEKLHQA-GFYRCEDIKNSDYRELLRQFGRQGASLW 229
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFS-----------VTEDKALLYRKLAEIAEMLSA 235
G+ + R RKS+ ERTFS V E+K LY +L + E S
Sbjct: 230 -QRSHGIDNREVVVERERKSVGVERTFSQNIATYGECWQVIEEK--LYPELEKRLERASP 286
Query: 236 D--MQKEGLRGRTLTLKLKTASFEVRT-RAVTLQKYISSSEDILKHASVLLKAELPVSLR 292
D + K+G +K+K A F++ T + Q + + +L+ +LK + +R
Sbjct: 287 DKSIIKQG-------IKVKFADFQLTTIEHIHPQLELEDFKILLRD---ILKRQNGREIR 336
Query: 293 LIGLRVTQFNEDKVR 307
L+GL V ED+ R
Sbjct: 337 LLGLNVMLKPEDQAR 351
>gi|69246405|ref|ZP_00603927.1| DNA-directed DNA polymerase [Enterococcus faecium DO]
gi|406580418|ref|ZP_11055611.1| DNA polymerase IV [Enterococcus sp. GMD4E]
gi|406582747|ref|ZP_11057845.1| DNA polymerase IV [Enterococcus sp. GMD3E]
gi|406584910|ref|ZP_11059906.1| DNA polymerase IV [Enterococcus sp. GMD2E]
gi|410936970|ref|ZP_11368832.1| DNA-directed DNA polymerase IV [Enterococcus sp. GMD5E]
gi|430824014|ref|ZP_19442581.1| DNA polymerase IV [Enterococcus faecium E0120]
gi|430844890|ref|ZP_19462787.1| DNA polymerase IV [Enterococcus faecium E1050]
gi|430846835|ref|ZP_19464689.1| DNA polymerase IV [Enterococcus faecium E1133]
gi|430851098|ref|ZP_19468853.1| DNA polymerase IV [Enterococcus faecium E1185]
gi|430856102|ref|ZP_19473806.1| DNA polymerase IV [Enterococcus faecium E1392]
gi|431237138|ref|ZP_19503281.1| DNA polymerase IV [Enterococcus faecium E1622]
gi|431264073|ref|ZP_19505961.1| DNA polymerase IV [Enterococcus faecium E1623]
gi|431382817|ref|ZP_19511410.1| DNA polymerase IV [Enterococcus faecium E1627]
gi|431522829|ref|ZP_19516778.1| DNA polymerase IV [Enterococcus faecium E1634]
gi|431536394|ref|ZP_19517354.1| DNA polymerase IV [Enterococcus faecium E1731]
gi|431701816|ref|ZP_19524925.1| DNA polymerase IV [Enterococcus faecium E1904]
gi|431744892|ref|ZP_19533757.1| DNA polymerase IV [Enterococcus faecium E2071]
gi|431779259|ref|ZP_19567455.1| DNA polymerase IV [Enterococcus faecium E4389]
gi|447913406|ref|YP_007394818.1| DNA polymerase IV [Enterococcus faecium NRRL B-2354]
gi|68195277|gb|EAN09729.1| DNA-directed DNA polymerase [Enterococcus faecium DO]
gi|404453795|gb|EKA00827.1| DNA polymerase IV [Enterococcus sp. GMD4E]
gi|404457737|gb|EKA04267.1| DNA polymerase IV [Enterococcus sp. GMD3E]
gi|404463129|gb|EKA08825.1| DNA polymerase IV [Enterococcus sp. GMD2E]
gi|410734563|gb|EKQ76482.1| DNA-directed DNA polymerase IV [Enterococcus sp. GMD5E]
gi|430441398|gb|ELA51495.1| DNA polymerase IV [Enterococcus faecium E0120]
gi|430496321|gb|ELA72426.1| DNA polymerase IV [Enterococcus faecium E1050]
gi|430534502|gb|ELA74946.1| DNA polymerase IV [Enterococcus faecium E1185]
gi|430538389|gb|ELA78681.1| DNA polymerase IV [Enterococcus faecium E1133]
gi|430545391|gb|ELA85365.1| DNA polymerase IV [Enterococcus faecium E1392]
gi|430572702|gb|ELB11552.1| DNA polymerase IV [Enterococcus faecium E1622]
gi|430576509|gb|ELB15160.1| DNA polymerase IV [Enterococcus faecium E1623]
gi|430581188|gb|ELB19635.1| DNA polymerase IV [Enterococcus faecium E1627]
gi|430585011|gb|ELB23320.1| DNA polymerase IV [Enterococcus faecium E1634]
gi|430594881|gb|ELB32833.1| DNA polymerase IV [Enterococcus faecium E1731]
gi|430597101|gb|ELB34905.1| DNA polymerase IV [Enterococcus faecium E1904]
gi|430604817|gb|ELB42247.1| DNA polymerase IV [Enterococcus faecium E2071]
gi|430642524|gb|ELB78301.1| DNA polymerase IV [Enterococcus faecium E4389]
gi|445189115|gb|AGE30757.1| DNA polymerase IV [Enterococcus faecium NRRL B-2354]
Length = 372
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 101/304 (33%), Positives = 164/304 (53%), Gaps = 19/304 (6%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG+ +AM A +LCP+ IF P D KY+ S R+VF +Y S+DEAYL
Sbjct: 62 ARKFGIHSAMSAQKAYELCPQAIFKPGDHHKYSDISKQVREVFYRYTDIVEPVSIDEAYL 121
Query: 68 DITEV---CRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QF 123
D+TE C+ S I+IA ++ ++E LTCSAGV+ N+ LAK+ SD KP G
Sbjct: 122 DVTENKINCK----SAIKIARMIQADIWESVQLTCSAGVSYNKFLAKLASDYQKPRGITV 177
Query: 124 VLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHST 182
V P D + F+ +LPI K G+GK T + ++ GI T +++ + +L F
Sbjct: 178 VAPQD---AVPFLKALPIEKFHGVGKKTVPRMHEL-GIYTGKDLYECTEMMLIRNFGKMG 233
Query: 183 ADFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKE 240
+ V G+ + R RKS+ E T+ + ++A+L +L ++AE + +++
Sbjct: 234 YSLYRKVR-GIHDSPVNVTRERKSVGKEHTYGQPLQTEEAVL-TQLRQLAEKVEEALRRV 291
Query: 241 GLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRV 298
G+T+ LK++ + T+ VTL +YI E + AS++ + L V +RL+G+ +
Sbjct: 292 QKHGKTVVLKVRYTDYSTVTKRVTLPEYIYKKEALFYQASLIWEEILGVEKGIRLLGITL 351
Query: 299 TQFN 302
T +
Sbjct: 352 TNLD 355
>gi|257885067|ref|ZP_05664720.1| DNA directed DNA polymerase [Enterococcus faecium 1,231,501]
gi|257820919|gb|EEV48053.1| DNA directed DNA polymerase [Enterococcus faecium 1,231,501]
Length = 373
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 101/304 (33%), Positives = 164/304 (53%), Gaps = 19/304 (6%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG+ +AM A +LCP+ IF P D KY+ S R+VF +Y S+DEAYL
Sbjct: 63 ARKFGIHSAMSAQKAYELCPQAIFKPGDHHKYSDISKQVREVFYRYTDIVEPVSIDEAYL 122
Query: 68 DITEV---CRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QF 123
D+TE C+ S I+IA ++ ++E LTCSAGV+ N+ LAK+ SD KP G
Sbjct: 123 DVTENKINCK----SAIKIARMIQADIWESVQLTCSAGVSYNKFLAKLASDYQKPRGITV 178
Query: 124 VLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHST 182
V P D + F+ +LPI K G+GK T + ++ GI T +++ + +L F
Sbjct: 179 VAPQD---AVPFLKALPIEKFHGVGKKTVPRMHEL-GIYTGKDLYECTEMMLIRNFGKMG 234
Query: 183 ADFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKE 240
+ V G+ + R RKS+ E T+ + ++A+L +L ++AE + +++
Sbjct: 235 YSLYRKVR-GIHDSPVNVTRERKSVGKEHTYGQPLQTEEAVL-TQLRQLAEKVEEALRRV 292
Query: 241 GLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRV 298
G+T+ LK++ + T+ VTL +YI E + AS++ + L V +RL+G+ +
Sbjct: 293 QKHGKTVVLKVRYTDYSTVTKRVTLPEYIYKKEALFYQASLIWEEVLGVEKGIRLLGITL 352
Query: 299 TQFN 302
T +
Sbjct: 353 TNLD 356
>gi|388567220|ref|ZP_10153657.1| DNA polymerase IV [Hydrogenophaga sp. PBC]
gi|388265603|gb|EIK91156.1| DNA polymerase IV [Hydrogenophaga sp. PBC]
Length = 423
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 100/315 (31%), Positives = 156/315 (49%), Gaps = 11/315 (3%)
Query: 7 SARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAY 66
+AR+FGV +AM A KLCP+ I +P DF + S ++V P +DE Y
Sbjct: 88 AARQFGVGSAMGLMKAAKLCPQAILLPVDFDEVKRLSRTFKRVIMDIAPVMQDRGVDEVY 147
Query: 67 LDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVL 125
+D T+V + G +A ++ S+++ GLTCS GVAPN+LLAK+ S+ NKPNG V+
Sbjct: 148 IDFTDVPGGQREGGRVLARLIQKSIFDATGLTCSIGVAPNKLLAKMASEFNKPNGISIVM 207
Query: 126 PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQK-GSLLCAVFSHSTAD 184
P D + I LP RK+ G+G + L+ GI+T ++ + L A F S
Sbjct: 208 PED---LQRLIWPLPCRKVNGVGPKADARLQS-HGIHTIGDLAAREPDWLVANFGKSYGA 263
Query: 185 FFLSVGLGLGS----TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKE 240
+ V G T + + + ER D+A L L E+ E +++D+Q++
Sbjct: 264 WLHEVAWGRDDRPVVTESEPVGMSRETTFERDLHAVHDRAELGAILTELCEQVASDLQRK 323
Query: 241 GLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK-AELPVSLRLIGLRVT 299
G RT+ +KL F TR +TL + + + I + A LK +L RL+G+R +
Sbjct: 324 GYLARTIGIKLTYVGFTKVTRDLTLDEPTADAATIRRAAGQCLKRVDLTRRFRLLGVRSS 383
Query: 300 QFNEDKVRAPSDPTQ 314
+ + P Q
Sbjct: 384 KLVKPGTHEAHGPDQ 398
>gi|398332321|ref|ZP_10517026.1| DNA polymerase IV [Leptospira alexanderi serovar Manhao 3 str. L
60]
Length = 313
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 96/280 (34%), Positives = 154/280 (55%), Gaps = 9/280 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR+AMP A +L P+ IFV F Y S+ R++F +Y SLDE YL
Sbjct: 40 ARKFGVRSAMPCSKAAQLAPQAIFVSPRFKVYKEVSNRIREIFLEYTDRVEMLSLDEGYL 99
Query: 68 DITEVCRERGIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVL 125
D+T ++ I + IA+E+R +++ LT SAGV ++ +AK+ S+ NKPNG VL
Sbjct: 100 DVT--FNKKNIPFAVTIAKEIRAEIFKRTELTASAGVGNSKFIAKLASEKNKPNGLAVVL 157
Query: 126 PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADF 185
P+D V+ FI LP+ G+GKVT ++++ GI T +++ K +
Sbjct: 158 PDD---VIAFIDPLPVSSFHGVGKVTAQKMKEL-GIYTGKDLRAKNINELVQHFGKMGIY 213
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSVTE-DKALLYRKLAEIAEMLSADMQKEGLRG 244
+ + G R RKS+ +E TF + D+ L ++L E+A + +++ G
Sbjct: 214 YYKISRGEDEREVESCRERKSLGAENTFDQDKIDREDLLQQLREVAVEVERRLKERDFAG 273
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK 284
+TLTLK+K F +RTR+ TL + I ++++ A+ LL+
Sbjct: 274 KTLTLKIKFQDFSLRTRSKTLSEPIFGADELYSVAAELLR 313
>gi|417606183|ref|ZP_12256714.1| DNA polymerase IV [Escherichia coli STEC_DG131-3]
gi|345365850|gb|EGW97950.1| DNA polymerase IV [Escherichia coli STEC_DG131-3]
Length = 351
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 86/209 (41%), Positives = 121/209 (57%), Gaps = 8/209 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR+AMP +A KLCP L +P F Y S+ R++F +Y SLDEAYL
Sbjct: 48 ARKFGVRSAMPTGMALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYL 107
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-P 126
D+T+ G S IA+E+R +++ E LT SAGVAP + LAK+ SD+NKPNGQFV+ P
Sbjct: 108 DVTDSVHCHG-SATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITP 166
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHST-ADF 185
+ V TF+ +LP+ KI G+GKV+ L + G+ TC + +QK L+ +
Sbjct: 167 AE---VPTFLQTLPLAKIPGVGKVSAAKL-EAMGLRTCGD-VQKSDLVILLKRFGKFGRI 221
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFS 214
G+ + R RKS+ ERT +
Sbjct: 222 LWERSQGIDERDVNSERLRKSVGVERTMA 250
>gi|304439728|ref|ZP_07399627.1| NAD(+) kinase [Peptoniphilus duerdenii ATCC BAA-1640]
gi|304371803|gb|EFM25410.1| NAD(+) kinase [Peptoniphilus duerdenii ATCC BAA-1640]
Length = 346
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 100/291 (34%), Positives = 155/291 (53%), Gaps = 11/291 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG+ +AMP F+AR LCP++I VP +Y S + Y S+DEAYL
Sbjct: 45 ARKFGLHSAMPIFMARSLCPQVIIVPGRMYRYKEKSIEVFSILKTYAKVIEQVSIDEAYL 104
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
DI G E+A ++++ V E+ GLT S G++ N+ LAK+ SD NKP+G +
Sbjct: 105 DIAGTE-----DGRELAMKIKSEVKEKTGLTISVGLSYNKFLAKIASDWNKPDGFMEIDE 159
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFF 186
D V + L I K+ GIGKV+E LR++ GIN ++++ + F+ + +
Sbjct: 160 D--MVPEILYDLDISKVHGIGKVSEDRLREL-GINNVKDLMSLSREYMTLEFNKMGHELY 216
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRT 246
+ G+ R RKS+ ERTF+ T D+ +LY + ++ LS D+++ T
Sbjct: 217 DRIR-GIDRREVKGDRKRKSMGVERTFTPTGDEKILYEYIDRFSKELSEDLKRIDKSAMT 275
Query: 247 LTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELPVSLRLIGL 296
+T+K+KT F++ T + T + I EDI A L K E LRL+G+
Sbjct: 276 ITIKIKTDKFKIHTISKTFLESIEKYEDIKNIAEELYDKLENRERLRLLGI 326
>gi|430821683|ref|ZP_19440274.1| DNA polymerase IV [Enterococcus faecium E0045]
gi|430829563|ref|ZP_19447655.1| DNA polymerase IV [Enterococcus faecium E0269]
gi|430869936|ref|ZP_19483091.1| DNA polymerase IV [Enterococcus faecium E1575]
gi|431766003|ref|ZP_19554501.1| DNA polymerase IV [Enterococcus faecium E4215]
gi|430438165|gb|ELA48638.1| DNA polymerase IV [Enterococcus faecium E0045]
gi|430480316|gb|ELA57492.1| DNA polymerase IV [Enterococcus faecium E0269]
gi|430559313|gb|ELA98672.1| DNA polymerase IV [Enterococcus faecium E1575]
gi|430627336|gb|ELB63845.1| DNA polymerase IV [Enterococcus faecium E4215]
Length = 372
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 101/304 (33%), Positives = 164/304 (53%), Gaps = 19/304 (6%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG+ +AM A +LCP+ IF P D KY+ S R+VF +Y S+DEAYL
Sbjct: 62 ARKFGIHSAMSAQKAYELCPQAIFKPGDHHKYSDISKQVREVFYRYTDIVEPVSIDEAYL 121
Query: 68 DITEV---CRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QF 123
D+TE C+ S I+IA ++ ++E LTCSAGV+ N+ LAK+ SD KP G
Sbjct: 122 DVTENKINCK----SAIKIARMIQADIWESVQLTCSAGVSYNKFLAKLASDYQKPRGITV 177
Query: 124 VLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHST 182
V P D + F+ +LPI K G+GK T + ++ GI T +++ + +L F
Sbjct: 178 VAPQD---AVPFLKALPIEKFHGVGKRTVPRMHEL-GIYTGKDLYECTEMMLIRNFGKMG 233
Query: 183 ADFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKE 240
+ V G+ + R RKS+ E T+ + ++A+L +L ++AE + +++
Sbjct: 234 YSLYRKVR-GIHDSPVNVTRERKSVGKEHTYGQPLQTEEAVL-TQLRQLAEKVEEALRRV 291
Query: 241 GLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRV 298
G+T+ LK++ + T+ VTL +YI E + AS++ + L V +RL+G+ +
Sbjct: 292 QKHGKTVVLKVRYTDYSTVTKRVTLPEYIYKKEALFYQASLIWEEILGVEKGIRLLGITL 351
Query: 299 TQFN 302
T +
Sbjct: 352 TNLD 355
>gi|419839102|ref|ZP_14362520.1| DNA polymerase IV [Haemophilus haemolyticus HK386]
gi|386909813|gb|EIJ74477.1| DNA polymerase IV [Haemophilus haemolyticus HK386]
Length = 355
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 108/308 (35%), Positives = 158/308 (51%), Gaps = 20/308 (6%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG+ +AMP A K CP LI VP + Y S ++F +Y SLDEAYL
Sbjct: 51 ARKFGLHSAMPTAQAIKKCPNLILVPVNMALYKQVSAQIHQIFQRYTDIIEPLSLDEAYL 110
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-P 126
D+T C++ S IA+E+R ++++E LT SAGVAP + LAK+ SD+NKPNGQFV+ P
Sbjct: 111 DVTH-CQKCSGSATWIAQEIRQAIFDELNLTASAGVAPLKFLAKIASDMNKPNGQFVIKP 169
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFF 186
N+ V FI +L + KI G+GKVT L D+ G+ TC ++ ++
Sbjct: 170 NE---VSEFIKTLSLNKIPGVGKVTSQRLLDM-GLETCADIQNFDQIVLLNQFGKAGKRI 225
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTF-----SVTEDKAL---LYRKLAEIAEMLSADMQ 238
G+ R RKS+ E+T ++ + AL LY +L E +S ++
Sbjct: 226 WDFSHGIDDREVQAHRERKSVGVEQTLVENIHTIEQASALLNNLYDELIRRLERVSRNIP 285
Query: 239 KEGLRGRTLTLKLKTASFEVRTRAVT-LQKYISSSEDILKHASVLLKAELPVSLRLIGLR 297
R + +KLK F+V T T L + S + +L + K ++RLIGL
Sbjct: 286 LSSF--RKIGVKLKFEDFQVTTLEKTGLPLSLESFQQLLPQIFMRAKGR---AIRLIGLH 340
Query: 298 VTQFNEDK 305
V E+K
Sbjct: 341 VNLPEENK 348
>gi|430833777|ref|ZP_19451788.1| DNA polymerase IV [Enterococcus faecium E0679]
gi|430839165|ref|ZP_19457107.1| DNA polymerase IV [Enterococcus faecium E0688]
gi|430859625|ref|ZP_19477234.1| DNA polymerase IV [Enterococcus faecium E1552]
gi|430486182|gb|ELA63050.1| DNA polymerase IV [Enterococcus faecium E0679]
gi|430491162|gb|ELA67644.1| DNA polymerase IV [Enterococcus faecium E0688]
gi|430543162|gb|ELA83237.1| DNA polymerase IV [Enterococcus faecium E1552]
Length = 372
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 101/304 (33%), Positives = 164/304 (53%), Gaps = 19/304 (6%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG+ +AM A +LCP+ IF P D KY+ S R+VF +Y S+DEAYL
Sbjct: 62 ARKFGIHSAMSAQKAYELCPQAIFKPGDHHKYSDISKQVREVFYRYTDIVEPVSIDEAYL 121
Query: 68 DITEV---CRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QF 123
D+TE C+ S I+IA ++ ++E LTCSAGV+ N+ LAK+ SD KP G
Sbjct: 122 DVTENKINCK----SAIKIARMIQADIWESVQLTCSAGVSYNKFLAKLASDYQKPRGITV 177
Query: 124 VLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHST 182
V P D + F+ +LPI K G+GK T + ++ GI T +++ + +L F
Sbjct: 178 VAPQD---AVPFLKALPIEKFHGVGKKTVPRMHEL-GIYTGKDLYECTEMMLIRNFGKMG 233
Query: 183 ADFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKE 240
+ V G+ + R RKS+ E T+ + ++A+L +L ++AE + +++
Sbjct: 234 YSLYRKVR-GIHDSPVNVTRERKSVGKEHTYGQPLQTEEAVL-TQLRQLAEKVEEALRRV 291
Query: 241 GLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRV 298
G+T+ LK++ + T+ VTL +YI E + AS++ + L V +RL+G+ +
Sbjct: 292 QKHGKTVVLKVRYTDYSTVTKRVTLPEYIYKKEALFYQASLIWEEILGVEKGIRLLGITL 351
Query: 299 TQFN 302
T +
Sbjct: 352 TNLD 355
>gi|284802420|ref|YP_003414285.1| hypothetical protein LM5578_2176 [Listeria monocytogenes 08-5578]
gi|284995562|ref|YP_003417330.1| hypothetical protein LM5923_2127 [Listeria monocytogenes 08-5923]
gi|284057982|gb|ADB68923.1| hypothetical protein LM5578_2176 [Listeria monocytogenes 08-5578]
gi|284061029|gb|ADB71968.1| hypothetical protein LM5923_2127 [Listeria monocytogenes 08-5923]
Length = 356
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 105/301 (34%), Positives = 159/301 (52%), Gaps = 15/301 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGV +AMP A KLCP IF+ + Y S+ R++F +Y SLDEAYL
Sbjct: 51 ARKFGVHSAMPTRQAAKLCPNGIFIHGNMAHYVEVSNQIREIFSRYTDIIEPLSLDEAYL 110
Query: 68 DITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVL 125
D+TE ++G+ S +A E++ ++Y E GLT SAGV+ N+ +AK+ SD KP G V
Sbjct: 111 DVTE--NKKGMKSATMVAREIQQTIYRELGLTASAGVSFNKFIAKIASDFKKPAGITVVA 168
Query: 126 PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTA 183
P + A F+ +P+ K G+GKVT L + GI T ++ + L+ + H
Sbjct: 169 PEEAEA---FLEQIPVTKFYGVGKVTAEKLHRL-GIETGADLKKWSEWDLIRELHKHGYH 224
Query: 184 DFFLSVGLGLGSTNTPQARFRKSISSERTFSVTE-DKALLYRKLAEIAEMLSADMQKEGL 242
+ G N P R RKS+ E TF D +L + L + A+ + + K
Sbjct: 225 LYRHVRGRSNNIVN-PH-RDRKSVGKETTFEFNVLDSRILEQSLMQFAKKVEERLIKLQK 282
Query: 243 RGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQ 300
G+T+ LKL+ + F T+ +TL +Y + + I + A++LL+ S+RLIGL VT
Sbjct: 283 HGKTVVLKLRYSDFTTITKRLTLNEYTNDANQIYQAAALLLRESYTGQDSIRLIGLTVTN 342
Query: 301 F 301
Sbjct: 343 L 343
>gi|365920653|ref|ZP_09444978.1| putative DNA polymerase IV [Cardiobacterium valvarum F0432]
gi|364577797|gb|EHM55045.1| putative DNA polymerase IV [Cardiobacterium valvarum F0432]
Length = 354
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 109/300 (36%), Positives = 148/300 (49%), Gaps = 10/300 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARR+G+ +AM A +LCP +I VP F Y S R + SLDEAYL
Sbjct: 50 ARRYGLHSAMSSHRALQLCPHVILVPPRFETYRAVSLQIRALMLAITDLVEPLSLDEAYL 109
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+++ ERG S IAE LR + GLT SAGV+ N++LAK+ SD+NKP+G V+P
Sbjct: 110 DVSDSPHERG-SATRIAERLRAEIRAATGLTASAGVSYNKMLAKIASDLNKPDGLAVIPP 168
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQ--KGSLLCAVFSHSTADF 185
F +SLPI + GIGK T + GI T ++L+ SL A H DF
Sbjct: 169 AEGP--AFAASLPIERFHGIGKATAAHMH-ALGIKTGADLLRFSAESLRQAFGKH--GDF 223
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTF-SVTEDKALLYRKLAEIAEMLSADMQKEGLRG 244
+ + G+ R RKSI SE TF E LY+ L + AD+QK L
Sbjct: 224 YYHMARGIDLRPVEPTRERKSIGSETTFIHDLEGIPALYQALLAQNQDAFADVQKRHLHP 283
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV-SLRLIGLRVTQFNE 303
TLT+KLK F TR+ ++ + D + LL P +RL+G+ + E
Sbjct: 284 HTLTIKLKYHDFSQITRSRSVSTPFTRENDAHYWIARLLHDIAPTKPVRLVGVTYSGLQE 343
>gi|16801148|ref|NP_471416.1| DNA polymerase IV [Listeria innocua Clip11262]
gi|22095622|sp|Q92A40.1|DPO4_LISIN RecName: Full=DNA polymerase IV; Short=Pol IV
gi|16414583|emb|CAC97312.1| lin2082 [Listeria innocua Clip11262]
Length = 356
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 105/301 (34%), Positives = 159/301 (52%), Gaps = 15/301 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGV +AMP A KLCP IF+ + Y S+ R++F +Y SLDEAYL
Sbjct: 51 ARKFGVHSAMPTRQAAKLCPNGIFIHGNMAHYVEVSNQIREIFSRYTDIIEPLSLDEAYL 110
Query: 68 DITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVL 125
D+TE ++G+ S +A E++ ++Y E GLT SAGV+ N+ +AK+ SD KP G V
Sbjct: 111 DVTE--NKKGMKSATMVAREIQQTIYRELGLTASAGVSFNKFIAKIASDFKKPAGITVVA 168
Query: 126 PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTA 183
P + A F+ +P+ K G+GKVT L + GI T ++ + L+ + H
Sbjct: 169 PEEAEA---FLEQIPVTKFYGVGKVTAEKLHRL-GIETGADLKKWSEWDLIRELHKHGYQ 224
Query: 184 DFFLSVGLGLGSTNTPQARFRKSISSERTFSVTE-DKALLYRKLAEIAEMLSADMQKEGL 242
+ G N P R RKS+ E TF D +L + L + A+ + + K
Sbjct: 225 LYRHVRGRSNNIVN-PH-RDRKSVGKETTFEFNVLDNRILEQSLMKFAKKVEERLIKLQK 282
Query: 243 RGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQ 300
G+T+ LKL+ + F T+ +TL +Y + + I + A++LL+ S+RLIGL VT
Sbjct: 283 HGKTVVLKLRYSDFTTITKRLTLNEYTNDANQIYQAAALLLRESYKGQDSIRLIGLTVTN 342
Query: 301 F 301
Sbjct: 343 L 343
>gi|385784018|ref|YP_005760191.1| ImpB/MucB/SamB family protein [Staphylococcus lugdunensis N920143]
gi|418413694|ref|ZP_12986910.1| DNA polymerase IV [Staphylococcus lugdunensis ACS-027-V-Sch2]
gi|339894274|emb|CCB53543.1| ImpB/MucB/SamB family protein [Staphylococcus lugdunensis N920143]
gi|410877332|gb|EKS25224.1| DNA polymerase IV [Staphylococcus lugdunensis ACS-027-V-Sch2]
Length = 359
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 102/297 (34%), Positives = 160/297 (53%), Gaps = 13/297 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++GV +AMP A KLCP+ +V + KY S+ +F Y SLDEAYL
Sbjct: 50 ARKYGVHSAMPMSQAHKLCPDGYYVQGQYEKYRTISNEIMSIFRSYTEAVEPMSLDEAYL 109
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
DIT + R + +IA +R +YE+ LT SAGV+ N+ LAK+ S +NKPNG V+
Sbjct: 110 DITHLVRP-DLPASQIANYIRRDIYEKTHLTASAGVSYNKFLAKLASGMNKPNGMTVI-- 166
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFF 186
D V + +L I G+GK +E I+ GI +++ QK L +F +
Sbjct: 167 DYENVHKILMALDIGDFPGVGKASEKIMHK-HGIYNGQDLYQKDVFELVRLFGKRGRGLY 225
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRG 244
+ G+ + +R RKS+ +ERTF+ V +D +L +K+ E++ + + K
Sbjct: 226 -NKARGIDDSPVKSSRIRKSVGTERTFATDVNDDDEIL-QKMWELSGKTAERLNKLQKSA 283
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELP---VSLRLIGLRV 298
+T+T+K+KT FE ++ ++L+ I S DI + + +L AEL +RLIG+ V
Sbjct: 284 KTVTVKIKTFKFETLSKQMSLRDPIRSETDIY-NIAYMLYAELKDPETPIRLIGVTV 339
>gi|332686123|ref|YP_004455897.1| DNA polymerase IV [Melissococcus plutonius ATCC 35311]
gi|379727827|ref|YP_005320012.1| DNA polymerase IV [Melissococcus plutonius DAT561]
gi|332370132|dbj|BAK21088.1| DNA polymerase IV [Melissococcus plutonius ATCC 35311]
gi|376318730|dbj|BAL62517.1| DNA polymerase IV [Melissococcus plutonius DAT561]
Length = 370
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 95/301 (31%), Positives = 161/301 (53%), Gaps = 15/301 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++G+ +AM A +LCP+ F P ++ KY+ S R +FC+Y AS+DEAYL
Sbjct: 64 ARQYGIHSAMSVKKAYELCPQATFKPGNYQKYSEVSQQIRTIFCRYTDIIEPASIDEAYL 123
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLP 126
D+T + + S I+IA ++ ++++E LTCSAG++ N+ LAK+ SD KP G +LP
Sbjct: 124 DVT-INKLHSKSAIKIARLIQQTIWQELQLTCSAGISYNKFLAKLASDYQKPKGLTVILP 182
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADF 185
+ F+ +L I K GIGK T + ++ GI T ++ + L F
Sbjct: 183 EE---AEDFLKNLAIEKFHGIGKKTVPKMHEL-GIYTGRDLYHVSEIVLIQHFGKMGYSL 238
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFS---VTEDKALLYRKLAEIAEMLSADMQKEGL 242
+ V G+ + RKS+ E T+ TE++ + +L ++A + A +Q+
Sbjct: 239 YRKVR-GIHDAPVDATKDRKSVGKEHTYRKPLATEEQVV--TQLRQLAMKVEASLQQAQK 295
Query: 243 RGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQ 300
G+T+ LK++ + T+ VTLQ+YI ED+ ++ + EL ++RL+G+ +T
Sbjct: 296 HGKTIVLKVRYEDYTTITKRVTLQEYIYMKEDLFYQVQMIWENELEWKKNIRLLGITLTN 355
Query: 301 F 301
Sbjct: 356 L 356
>gi|352089863|ref|ZP_08954168.1| DNA-directed DNA polymerase [Rhodanobacter sp. 2APBS1]
gi|351679031|gb|EHA62174.1| DNA-directed DNA polymerase [Rhodanobacter sp. 2APBS1]
Length = 367
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 108/309 (34%), Positives = 155/309 (50%), Gaps = 9/309 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FGVR+AMP A +LCP+LIFVP DF +Y S R++F ++ SLDEAYL
Sbjct: 59 ARVFGVRSAMPAIRAERLCPQLIFVPPDFVRYKAVSRQVREIFARHTELIEPLSLDEAYL 118
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T G S AE +R ++ +E LT SAGVAPN+ LAK+ SD KP+G FV+
Sbjct: 119 DVTTTKSGLG-SATATAEAIREAIRKETRLTASAGVAPNKFLAKIASDFRKPDGLFVIRP 177
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
+ V F++ LP+ ++ G+GKV E L GI T E+
Sbjct: 178 QQ--VEAFLTPLPVGRLPGVGKVMEAKL-AALGIATVGELRAFAQAELEQRFGRWGRRLH 234
Query: 188 SVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKE-GLRGRT 246
+ G+ R +S+E TF L + ++AE A Q+E G RT
Sbjct: 235 ELAQGIDEHPVQPQRPTLQVSAEDTFEHDLRLDELEPHIRQLAEKAWAGHQREHGRVART 294
Query: 247 LTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELPVS--LRLIGLRVTQF-N 302
+ LKLKTA F TR++T S+ ++ A L + + P RL+G+ + F +
Sbjct: 295 VVLKLKTADFHTLTRSLTPPTRPMSAAELADIACALRERVQRPADSRYRLVGVGLAGFVD 354
Query: 303 EDKVRAPSD 311
D +A +D
Sbjct: 355 RDSYQAQAD 363
>gi|289550388|ref|YP_003471292.1| DNA polymerase IV [Staphylococcus lugdunensis HKU09-01]
gi|289179920|gb|ADC87165.1| DNA polymerase IV [Staphylococcus lugdunensis HKU09-01]
Length = 359
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 102/297 (34%), Positives = 160/297 (53%), Gaps = 13/297 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++GV +AMP A KLCP+ +V + KY S+ +F Y SLDEAYL
Sbjct: 50 ARKYGVHSAMPMSQAHKLCPDGYYVQGQYEKYRTISNEIMSIFRSYTEAVEPMSLDEAYL 109
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
DIT + R + +IA +R +YE+ LT SAGV+ N+ LAK+ S +NKPNG V+
Sbjct: 110 DITHLVRP-DLPASQIANYIRRDIYEKTHLTASAGVSYNKFLAKLASGMNKPNGMTVI-- 166
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFF 186
D V + +L I G+GK +E I+ GI +++ QK L +F +
Sbjct: 167 DYENVHKILMALDIGDFPGVGKASEKIMHK-HGIYNGQDLYQKDVFELVRLFGKRGRGLY 225
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRG 244
+ G+ + +R RKS+ +ERTF+ V +D +L +K+ E++ + + K
Sbjct: 226 -NKARGIDDSPVKSSRIRKSVGTERTFATDVNDDDEIL-QKMWELSGKTAERLNKLQKSA 283
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELP---VSLRLIGLRV 298
+T+T+K+KT FE ++ ++L+ I S DI + + +L AEL +RLIG+ V
Sbjct: 284 KTVTVKIKTFKFETLSKQMSLRDPIRSETDIY-NIAYMLYAELKDPETPIRLIGVTV 339
>gi|386054230|ref|YP_005971788.1| DNA polymerase IV [Listeria monocytogenes Finland 1998]
gi|346646881|gb|AEO39506.1| DNA polymerase IV [Listeria monocytogenes Finland 1998]
Length = 356
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 105/301 (34%), Positives = 159/301 (52%), Gaps = 15/301 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGV +AMP A KLCP IF+ + Y S+ R++F +Y SLDEAYL
Sbjct: 51 ARKFGVHSAMPTRQAAKLCPNGIFIHGNMAHYVEVSNQIREIFSRYTDIIEPLSLDEAYL 110
Query: 68 DITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVL 125
D+T+ ++G+ S +A E++ ++Y E GLT SAGV+ N+ +AK+ SD KP G V
Sbjct: 111 DVTK--NKKGMKSATMVAREIQQTIYRELGLTASAGVSFNKFIAKIASDFKKPAGITVVT 168
Query: 126 PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEE--MLQKGSLLCAVFSHSTA 183
P + A F+ +P+ K G+GKVT L + GI T + M + L+ + H
Sbjct: 169 PEEAEA---FLEQIPVTKFYGVGKVTAEKLHRL-GIETGADLKMWSEWDLIRELHKHGYH 224
Query: 184 DFFLSVGLGLGSTNTPQARFRKSISSERTFSVTE-DKALLYRKLAEIAEMLSADMQKEGL 242
+ G N P R RKS+ E TF D +L + L + A+ + + K
Sbjct: 225 LYRHVRGRSNNIVN-PH-RDRKSVGKETTFEFNVLDSRILEQSLMQFAKKVEERLIKLQK 282
Query: 243 RGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQ 300
G+T+ LKL+ + F T+ +TL +Y + + I + A++LL+ S+RLIGL VT
Sbjct: 283 HGKTVVLKLRYSDFTTITKRLTLNEYTNDANQIYQAAALLLRESYTGQDSIRLIGLTVTN 342
Query: 301 F 301
Sbjct: 343 L 343
>gi|398827094|ref|ZP_10585309.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Phyllobacterium sp. YR531]
gi|398220334|gb|EJN06787.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Phyllobacterium sp. YR531]
Length = 353
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 103/295 (34%), Positives = 151/295 (51%), Gaps = 13/295 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGV +AMP A + CP LIFV Y S R++FC Y P SLDEAYL
Sbjct: 48 ARKFGVHSAMPSVTAARKCPSLIFVKPRLEVYRDVSQQIREIFCDYTPLVEPLSLDEAYL 107
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+TE + I+ EIA E+R + GLT SAG++ N+ LAK+ SD+NKPNGQ V+P
Sbjct: 108 DVTENLKGMEIA-TEIASEIRARILAVTGLTASAGISYNKFLAKIASDLNKPNGQAVIPP 166
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFF 186
+FI LP++K G+G T + + GI T ++ Q+ L F + A +F
Sbjct: 167 KTGP--SFIQRLPVKKFHGVGPATAEKMHQL-GIETGADLKQRSFEFLSQHFGKAGA-YF 222
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQ---KEGLR 243
+ G+ + + R RKSI +E TF ED L ++ ++S Q
Sbjct: 223 YGIARGIDNRDVQPDRKRKSIGAEDTFP--EDVFELETAREQLHPLVSKVCQFCSNNDTG 280
Query: 244 GRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGL 296
+T+TLK+K F+ TR+ T + + LL++ P +RL+G+
Sbjct: 281 AKTVTLKVKYFDFQTITRSRTSPAASRTEASVWIILEPLLQSVFPTRKGIRLLGV 335
>gi|430837087|ref|ZP_19455063.1| DNA polymerase IV [Enterococcus faecium E0680]
gi|430487868|gb|ELA64576.1| DNA polymerase IV [Enterococcus faecium E0680]
Length = 373
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 104/309 (33%), Positives = 163/309 (52%), Gaps = 29/309 (9%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG+ +AM A +LCP+ IF P D KY+ S R+VF +Y S+DEAYL
Sbjct: 63 ARKFGIHSAMSAQKAYELCPQAIFKPGDHHKYSDISKQVREVFYRYTDIVEPVSIDEAYL 122
Query: 68 DITEV---CRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QF 123
D+TE C+ S I+IA ++ ++E LTCSAGV+ N+ LAK+ SD KP G
Sbjct: 123 DVTENKINCK----SAIKIARMIQADIWESVQLTCSAGVSYNKFLAKLASDYQKPRGITV 178
Query: 124 VLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINT------CEEMLQKGSLLCAV 177
V P D + F+ +LPI K G+GK T + ++ GI T C EM+ L
Sbjct: 179 VAPQD---AVPFLKALPIEKFHGVGKKTVPRMHEL-GIYTGKDLYECTEMM-----LIRN 229
Query: 178 FSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSA 235
F + V G+ + R RKS+ E T+ + ++A+L +L ++AE +
Sbjct: 230 FGKMGYSLYRKVR-GIHDSPVNVTRERKSVGKEHTYGQPLQTEEAVL-TQLRQLAEKVEE 287
Query: 236 DMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRL 293
+++ G+T+ LK++ + T+ VTL +YI E + AS++ + L V +RL
Sbjct: 288 ALRRVQKHGKTVVLKVRYTDYSTVTKRVTLPEYIYKKEALFYQASLIWEEILGVEKGIRL 347
Query: 294 IGLRVTQFN 302
+G+ +T +
Sbjct: 348 LGITLTNLD 356
>gi|257879319|ref|ZP_05658972.1| DNA directed DNA polymerase [Enterococcus faecium 1,230,933]
gi|257881865|ref|ZP_05661518.1| DNA directed DNA polymerase [Enterococcus faecium 1,231,502]
gi|257890145|ref|ZP_05669798.1| DNA directed DNA polymerase [Enterococcus faecium 1,231,410]
gi|257893473|ref|ZP_05673126.1| DNA directed DNA polymerase [Enterococcus faecium 1,231,408]
gi|260558761|ref|ZP_05830950.1| DNA directed DNA polymerase [Enterococcus faecium C68]
gi|261207356|ref|ZP_05922043.1| DNA directed DNA polymerase [Enterococcus faecium TC 6]
gi|289566863|ref|ZP_06447272.1| DNA polymerase IV [Enterococcus faecium D344SRF]
gi|293559579|ref|ZP_06676113.1| DNA-damage-inducible protein P [Enterococcus faecium E1162]
gi|293567574|ref|ZP_06678918.1| DNA-damage-inducible protein P [Enterococcus faecium E1071]
gi|294615737|ref|ZP_06695587.1| DNA-damage-inducible protein P [Enterococcus faecium E1636]
gi|294617662|ref|ZP_06697289.1| DNA-damage-inducible protein P [Enterococcus faecium E1679]
gi|314937919|ref|ZP_07845235.1| DNA polymerase IV [Enterococcus faecium TX0133a04]
gi|314941410|ref|ZP_07848303.1| DNA polymerase IV [Enterococcus faecium TX0133C]
gi|314948535|ref|ZP_07851915.1| DNA polymerase IV [Enterococcus faecium TX0082]
gi|314951290|ref|ZP_07854344.1| DNA polymerase IV [Enterococcus faecium TX0133A]
gi|314992879|ref|ZP_07858280.1| DNA polymerase IV [Enterococcus faecium TX0133B]
gi|314998083|ref|ZP_07862971.1| DNA polymerase IV [Enterococcus faecium TX0133a01]
gi|383328038|ref|YP_005353922.1| DNA polymerase IV [Enterococcus faecium Aus0004]
gi|389867928|ref|YP_006375351.1| DNA-directed DNA polymerase IV [Enterococcus faecium DO]
gi|415894551|ref|ZP_11550362.1| DNA-damage-inducible protein P [Enterococcus faecium E4453]
gi|416141894|ref|ZP_11599495.1| DNA-damage-inducible protein P [Enterococcus faecium E4452]
gi|424790843|ref|ZP_18217351.1| putative DNA polymerase IV [Enterococcus faecium V689]
gi|424812972|ref|ZP_18238210.1| putative DNA polymerase IV [Enterococcus faecium S447]
gi|424827112|ref|ZP_18251927.1| putative DNA polymerase IV [Enterococcus faecium R501]
gi|424862493|ref|ZP_18286434.1| putative DNA polymerase IV [Enterococcus faecium R499]
gi|424901209|ref|ZP_18324746.1| putative DNA polymerase IV [Enterococcus faecium R497]
gi|424951499|ref|ZP_18366589.1| putative DNA polymerase IV [Enterococcus faecium R496]
gi|424952391|ref|ZP_18367416.1| putative DNA polymerase IV [Enterococcus faecium R494]
gi|424956586|ref|ZP_18371357.1| putative DNA polymerase IV [Enterococcus faecium R446]
gi|424961921|ref|ZP_18376320.1| putative DNA polymerase IV [Enterococcus faecium P1986]
gi|424964118|ref|ZP_18378259.1| putative DNA polymerase IV [Enterococcus faecium P1190]
gi|424968420|ref|ZP_18382044.1| putative DNA polymerase IV [Enterococcus faecium P1140]
gi|424969912|ref|ZP_18383457.1| putative DNA polymerase IV [Enterococcus faecium P1139]
gi|424973275|ref|ZP_18386563.1| putative DNA polymerase IV [Enterococcus faecium P1137]
gi|424978170|ref|ZP_18391116.1| putative DNA polymerase IV [Enterococcus faecium P1123]
gi|424982026|ref|ZP_18394709.1| putative DNA polymerase IV [Enterococcus faecium ERV99]
gi|424984626|ref|ZP_18397153.1| putative DNA polymerase IV [Enterococcus faecium ERV69]
gi|424986313|ref|ZP_18398740.1| putative DNA polymerase IV [Enterococcus faecium ERV38]
gi|424990169|ref|ZP_18402393.1| putative DNA polymerase IV [Enterococcus faecium ERV26]
gi|424994773|ref|ZP_18406698.1| putative DNA polymerase IV [Enterococcus faecium ERV168]
gi|424999062|ref|ZP_18410709.1| putative DNA polymerase IV [Enterococcus faecium ERV165]
gi|425005449|ref|ZP_18416691.1| putative DNA polymerase IV [Enterococcus faecium ERV102]
gi|425007823|ref|ZP_18418938.1| putative DNA polymerase IV [Enterococcus faecium ERV1]
gi|425009707|ref|ZP_18420701.1| putative DNA polymerase IV [Enterococcus faecium E422]
gi|425014480|ref|ZP_18425154.1| putative DNA polymerase IV [Enterococcus faecium E417]
gi|425019387|ref|ZP_18429755.1| putative DNA polymerase IV [Enterococcus faecium C621]
gi|425019621|ref|ZP_18429969.1| putative DNA polymerase IV [Enterococcus faecium C497]
gi|425023820|ref|ZP_18433915.1| putative DNA polymerase IV [Enterococcus faecium C1904]
gi|425031184|ref|ZP_18436327.1| putative DNA polymerase IV [Enterococcus faecium 515]
gi|425036572|ref|ZP_18441314.1| putative DNA polymerase IV [Enterococcus faecium 514]
gi|425039062|ref|ZP_18443629.1| putative DNA polymerase IV [Enterococcus faecium 513]
gi|425043158|ref|ZP_18447421.1| putative DNA polymerase IV [Enterococcus faecium 511]
gi|425045520|ref|ZP_18449619.1| putative DNA polymerase IV [Enterococcus faecium 510]
gi|425048658|ref|ZP_18452549.1| putative DNA polymerase IV [Enterococcus faecium 509]
gi|425051519|ref|ZP_18455183.1| putative DNA polymerase IV [Enterococcus faecium 506]
gi|425061120|ref|ZP_18464385.1| putative DNA polymerase IV [Enterococcus faecium 503]
gi|427395461|ref|ZP_18888383.1| hypothetical protein HMPREF9307_00559 [Enterococcus durans
FB129-CNAB-4]
gi|430831485|ref|ZP_19449536.1| DNA polymerase IV [Enterococcus faecium E0333]
gi|430862315|ref|ZP_19479632.1| DNA polymerase IV [Enterococcus faecium E1573]
gi|430867327|ref|ZP_19482321.1| DNA polymerase IV [Enterococcus faecium E1574]
gi|430963227|ref|ZP_19487519.1| DNA polymerase IV [Enterococcus faecium E1576]
gi|431011146|ref|ZP_19489890.1| DNA polymerase IV [Enterococcus faecium E1578]
gi|431290485|ref|ZP_19506620.1| DNA polymerase IV [Enterococcus faecium E1626]
gi|431747928|ref|ZP_19536692.1| DNA polymerase IV [Enterococcus faecium E2297]
gi|431754045|ref|ZP_19542710.1| DNA polymerase IV [Enterococcus faecium E2883]
gi|431768728|ref|ZP_19557161.1| DNA polymerase IV [Enterococcus faecium E1321]
gi|431770023|ref|ZP_19558426.1| DNA polymerase IV [Enterococcus faecium E1644]
gi|431774449|ref|ZP_19562757.1| DNA polymerase IV [Enterococcus faecium E2369]
gi|431776996|ref|ZP_19565253.1| DNA polymerase IV [Enterococcus faecium E2560]
gi|431781303|ref|ZP_19569451.1| DNA polymerase IV [Enterococcus faecium E6012]
gi|431784934|ref|ZP_19572969.1| DNA polymerase IV [Enterococcus faecium E6045]
gi|257813547|gb|EEV42305.1| DNA directed DNA polymerase [Enterococcus faecium 1,230,933]
gi|257817523|gb|EEV44851.1| DNA directed DNA polymerase [Enterococcus faecium 1,231,502]
gi|257826505|gb|EEV53131.1| DNA directed DNA polymerase [Enterococcus faecium 1,231,410]
gi|257829852|gb|EEV56459.1| DNA directed DNA polymerase [Enterococcus faecium 1,231,408]
gi|260075220|gb|EEW63533.1| DNA directed DNA polymerase [Enterococcus faecium C68]
gi|260078416|gb|EEW66120.1| DNA directed DNA polymerase [Enterococcus faecium TC 6]
gi|289161351|gb|EFD09242.1| DNA polymerase IV [Enterococcus faecium D344SRF]
gi|291589675|gb|EFF21479.1| DNA-damage-inducible protein P [Enterococcus faecium E1071]
gi|291591388|gb|EFF23047.1| DNA-damage-inducible protein P [Enterococcus faecium E1636]
gi|291596069|gb|EFF27335.1| DNA-damage-inducible protein P [Enterococcus faecium E1679]
gi|291606455|gb|EFF35855.1| DNA-damage-inducible protein P [Enterococcus faecium E1162]
gi|313587925|gb|EFR66770.1| DNA polymerase IV [Enterococcus faecium TX0133a01]
gi|313592683|gb|EFR71528.1| DNA polymerase IV [Enterococcus faecium TX0133B]
gi|313596507|gb|EFR75352.1| DNA polymerase IV [Enterococcus faecium TX0133A]
gi|313599833|gb|EFR78676.1| DNA polymerase IV [Enterococcus faecium TX0133C]
gi|313642777|gb|EFS07357.1| DNA polymerase IV [Enterococcus faecium TX0133a04]
gi|313645032|gb|EFS09612.1| DNA polymerase IV [Enterococcus faecium TX0082]
gi|364089914|gb|EHM32556.1| DNA-damage-inducible protein P [Enterococcus faecium E4452]
gi|364092131|gb|EHM34531.1| DNA-damage-inducible protein P [Enterococcus faecium E4453]
gi|378937732|gb|AFC62804.1| DNA polymerase IV [Enterococcus faecium Aus0004]
gi|388533177|gb|AFK58369.1| DNA-directed DNA polymerase IV [Enterococcus faecium DO]
gi|402916579|gb|EJX37434.1| putative DNA polymerase IV [Enterococcus faecium S447]
gi|402920398|gb|EJX40916.1| putative DNA polymerase IV [Enterococcus faecium V689]
gi|402923556|gb|EJX43839.1| putative DNA polymerase IV [Enterococcus faecium R501]
gi|402925523|gb|EJX45657.1| putative DNA polymerase IV [Enterococcus faecium R499]
gi|402929819|gb|EJX49540.1| putative DNA polymerase IV [Enterococcus faecium R496]
gi|402931190|gb|EJX50781.1| putative DNA polymerase IV [Enterococcus faecium R497]
gi|402941404|gb|EJX60134.1| putative DNA polymerase IV [Enterococcus faecium R494]
gi|402942144|gb|EJX60773.1| putative DNA polymerase IV [Enterococcus faecium P1986]
gi|402945696|gb|EJX64030.1| putative DNA polymerase IV [Enterococcus faecium R446]
gi|402947532|gb|EJX65740.1| putative DNA polymerase IV [Enterococcus faecium P1190]
gi|402952036|gb|EJX69896.1| putative DNA polymerase IV [Enterococcus faecium P1140]
gi|402958911|gb|EJX76192.1| putative DNA polymerase IV [Enterococcus faecium P1137]
gi|402961782|gb|EJX78777.1| putative DNA polymerase IV [Enterococcus faecium ERV99]
gi|402962996|gb|EJX79896.1| putative DNA polymerase IV [Enterococcus faecium P1123]
gi|402963083|gb|EJX79977.1| putative DNA polymerase IV [Enterococcus faecium P1139]
gi|402968385|gb|EJX84868.1| putative DNA polymerase IV [Enterococcus faecium ERV69]
gi|402976878|gb|EJX92731.1| putative DNA polymerase IV [Enterococcus faecium ERV38]
gi|402979166|gb|EJX94849.1| putative DNA polymerase IV [Enterococcus faecium ERV168]
gi|402980164|gb|EJX95791.1| putative DNA polymerase IV [Enterococcus faecium ERV26]
gi|402980893|gb|EJX96463.1| putative DNA polymerase IV [Enterococcus faecium ERV165]
gi|402985999|gb|EJY01151.1| putative DNA polymerase IV [Enterococcus faecium ERV102]
gi|402994248|gb|EJY08791.1| putative DNA polymerase IV [Enterococcus faecium ERV1]
gi|402998300|gb|EJY12563.1| putative DNA polymerase IV [Enterococcus faecium C621]
gi|402998547|gb|EJY12796.1| putative DNA polymerase IV [Enterococcus faecium E417]
gi|403001961|gb|EJY15974.1| putative DNA polymerase IV [Enterococcus faecium E422]
gi|403008428|gb|EJY21932.1| putative DNA polymerase IV [Enterococcus faecium C1904]
gi|403011172|gb|EJY24501.1| putative DNA polymerase IV [Enterococcus faecium C497]
gi|403014113|gb|EJY27131.1| putative DNA polymerase IV [Enterococcus faecium 514]
gi|403016353|gb|EJY29177.1| putative DNA polymerase IV [Enterococcus faecium 515]
gi|403017456|gb|EJY30199.1| putative DNA polymerase IV [Enterococcus faecium 513]
gi|403020988|gb|EJY33472.1| putative DNA polymerase IV [Enterococcus faecium 511]
gi|403026817|gb|EJY38752.1| putative DNA polymerase IV [Enterococcus faecium 510]
gi|403029973|gb|EJY41693.1| putative DNA polymerase IV [Enterococcus faecium 509]
gi|403037479|gb|EJY48751.1| putative DNA polymerase IV [Enterococcus faecium 506]
gi|403042057|gb|EJY53033.1| putative DNA polymerase IV [Enterococcus faecium 503]
gi|425723961|gb|EKU86847.1| hypothetical protein HMPREF9307_00559 [Enterococcus durans
FB129-CNAB-4]
gi|430481368|gb|ELA58524.1| DNA polymerase IV [Enterococcus faecium E0333]
gi|430548893|gb|ELA88740.1| DNA polymerase IV [Enterococcus faecium E1573]
gi|430550338|gb|ELA90134.1| DNA polymerase IV [Enterococcus faecium E1574]
gi|430555652|gb|ELA95189.1| DNA polymerase IV [Enterococcus faecium E1576]
gi|430560168|gb|ELA99474.1| DNA polymerase IV [Enterococcus faecium E1578]
gi|430582585|gb|ELB21007.1| DNA polymerase IV [Enterococcus faecium E1626]
gi|430614804|gb|ELB51775.1| DNA polymerase IV [Enterococcus faecium E2297]
gi|430619968|gb|ELB56771.1| DNA polymerase IV [Enterococcus faecium E2883]
gi|430628596|gb|ELB65030.1| DNA polymerase IV [Enterococcus faecium E1321]
gi|430634198|gb|ELB70333.1| DNA polymerase IV [Enterococcus faecium E2369]
gi|430635776|gb|ELB71855.1| DNA polymerase IV [Enterococcus faecium E1644]
gi|430639937|gb|ELB75791.1| DNA polymerase IV [Enterococcus faecium E2560]
gi|430648490|gb|ELB83896.1| DNA polymerase IV [Enterococcus faecium E6045]
gi|430649664|gb|ELB85032.1| DNA polymerase IV [Enterococcus faecium E6012]
Length = 373
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 101/304 (33%), Positives = 164/304 (53%), Gaps = 19/304 (6%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG+ +AM A +LCP+ IF P D KY+ S R+VF +Y S+DEAYL
Sbjct: 63 ARKFGIHSAMSAQKAYELCPQAIFKPGDHHKYSDISKQVREVFYRYTDIVEPVSIDEAYL 122
Query: 68 DITEV---CRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QF 123
D+TE C+ S I+IA ++ ++E LTCSAGV+ N+ LAK+ SD KP G
Sbjct: 123 DVTENKINCK----SAIKIARMIQADIWESVQLTCSAGVSYNKFLAKLASDYQKPRGITV 178
Query: 124 VLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHST 182
V P D + F+ +LPI K G+GK T + ++ GI T +++ + +L F
Sbjct: 179 VAPQD---AVPFLKALPIEKFHGVGKKTVPRMHEL-GIYTGKDLYECTEMMLIRNFGKMG 234
Query: 183 ADFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKE 240
+ V G+ + R RKS+ E T+ + ++A+L +L ++AE + +++
Sbjct: 235 YSLYRKVR-GIHDSPVNVTRERKSVGKEHTYGQPLQTEEAVL-TQLRQLAEKVEEALRRV 292
Query: 241 GLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRV 298
G+T+ LK++ + T+ VTL +YI E + AS++ + L V +RL+G+ +
Sbjct: 293 QKHGKTVVLKVRYTDYSTVTKRVTLPEYIYKKEALFYQASLIWEEILGVEKGIRLLGITL 352
Query: 299 TQFN 302
T +
Sbjct: 353 TNLD 356
>gi|148556499|ref|YP_001264081.1| DNA-directed DNA polymerase [Sphingomonas wittichii RW1]
gi|148501689|gb|ABQ69943.1| DNA-directed DNA polymerase [Sphingomonas wittichii RW1]
Length = 380
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 107/304 (35%), Positives = 161/304 (52%), Gaps = 17/304 (5%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++GVR+AM +AR+LCP+L+FV F Y S +F Y SLDEAYL
Sbjct: 69 ARKYGVRSAMASALARRLCPDLLFVRPRFEVYREVSRQIHLIFADYTDLVEPLSLDEAYL 128
Query: 68 DITEVCRERGIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP 126
D+T +GI+ E+A ++R + EE GLT SAGV+ N+ +AK+ SD NKP+G V+
Sbjct: 129 DVTN--NHQGIATATEVARQIRARIREETGLTASAGVSYNKFIAKLASDHNKPDGLCVVR 186
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHSTADF 185
D+ + FI+ P+ + G+G VT + + GI+T ++ + L F S D+
Sbjct: 187 PDQG--LAFIAMQPVGRFHGVGPVTATRM-EKLGIHTGADLRRCSREFLGQQFGKS-GDY 242
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTF----SVTEDKALLYRKLAEIAEMLSADMQKEG 241
F + R RKSI SE TF ED L L E +E ++ ++ G
Sbjct: 243 FYLAARAIDHRAVRPDRVRKSIGSENTFFHDLYSHED---LAAALLESSESVARHAERTG 299
Query: 242 LRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSL--RLIGLRVT 299
GRT+++KL+ + F TRA TL ++ + I + A LL PV+L RL+G+ ++
Sbjct: 300 KAGRTISIKLRYSDFRTLTRARTLPAPVADAARIQEVALALLAPLEPVALGVRLLGVTLS 359
Query: 300 QFNE 303
E
Sbjct: 360 SLGE 363
>gi|335042079|ref|ZP_08535106.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Methylophaga aminisulfidivorans MP]
gi|333788693|gb|EGL54575.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Methylophaga aminisulfidivorans MP]
Length = 362
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 105/305 (34%), Positives = 167/305 (54%), Gaps = 22/305 (7%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++G+ +AMP A +LC +FVP F Y S+ R +F +Y SLDEAYL
Sbjct: 51 ARKYGIHSAMPCSRAYRLCSHALFVPPRFDAYREVSNQIRDIFWRYATEVEPLSLDEAYL 110
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-P 126
D+T G S IA+ ++ + +E LT SAGV+ N+ LAK+ SD++KPNG +V+ P
Sbjct: 111 DVTYTEAFNG-SATLIAQAIKREILQETRLTASAGVSYNKFLAKIASDMDKPNGLYVIRP 169
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADF 185
A F+++LP+ K GIG TE + ++ GI+T +++ +K + L F + +
Sbjct: 170 EQGEA---FVAALPVGKFHGIGPATETKMHNL-GIHTGKDLREKSLTELTERFGKA-GQY 224
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTF-----SVTEDKALLYRKLAEIAEMLSADMQKE 240
+ ++ + R RKS+ E TF S+ E L KL ++AE + + K+
Sbjct: 225 YYNIARAIDERPVRSQRIRKSLGKETTFAEDIHSIPE----LTAKLLDLAERVFESLVKQ 280
Query: 241 GLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL--KAELPVS-LRLIGLR 297
L+ RT+T+K+K A F+ TRA + + I ++ LK LL K E + LRL+GL
Sbjct: 281 NLKARTITVKVKYADFQQVTRAHSTEHIIQLTD--LKQIIPLLLEKTEAGIKPLRLVGLS 338
Query: 298 VTQFN 302
++ F+
Sbjct: 339 MSGFD 343
>gi|418662812|ref|ZP_13224345.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-122]
gi|375035502|gb|EHS28624.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-122]
Length = 356
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 101/301 (33%), Positives = 161/301 (53%), Gaps = 11/301 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++GV +AMP A KLCP FV + F Y S +F Y SLDEAYL
Sbjct: 50 ARKYGVHSAMPMSQAHKLCPNGYFVTSHFGAYRETSAQIMSIFRSYTDKVEPMSLDEAYL 109
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
DITE+ R + +IA+ +R + E+ LT SAGV+ N+ LAK+ S +NKP+G V+
Sbjct: 110 DITELVRP-DLPASKIAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGLTVI-- 166
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFF 186
D V + +L I G+GK ++ ++ D GI ++ +K L +F +
Sbjct: 167 DYQNVHDILMTLDIGDFPGVGKASKKVMHDN-GIFNGRDLYEKTEFELIRLFGKRGRGLY 225
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRG 244
+ G+ + +R RKS+ +ERTF+ V +D+ +L RK+ E++ + + K
Sbjct: 226 -NKARGIDHSEVKSSRVRKSVGTERTFATDVNDDEEIL-RKVWELSGKTAERLNKLQKSA 283
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRVTQFN 302
+T+T+K+KT FE ++ ++L+ +SS EDI A +L + V +RLIG+ V
Sbjct: 284 KTVTVKIKTYQFETLSKQMSLRDSVSSEEDIYNIAYLLYNDLKDPDVPIRLIGVTVGNLE 343
Query: 303 E 303
+
Sbjct: 344 Q 344
>gi|296877987|ref|ZP_06902006.1| DNA-directed DNA polymerase IV [Clostridium difficile NAP07]
gi|296431055|gb|EFH16883.1| DNA-directed DNA polymerase IV [Clostridium difficile NAP07]
Length = 366
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 102/308 (33%), Positives = 163/308 (52%), Gaps = 20/308 (6%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG+ +AMP +A CP +FV F Y S+ R +F +Y SLDEAYL
Sbjct: 52 ARKFGIHSAMPSAVAYNRCPYAVFVRPRFDVYKSVSEQIRDIFYRYTDLVEPLSLDEAYL 111
Query: 68 DITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP 126
D+T+ ++ I S IEIA++++ ++ E GLT SAGV+ N+ LAK+ SD+ KPNG V+
Sbjct: 112 DVTK--NKKNIDSSIEIAKQIKKDIFREVGLTSSAGVSYNKFLAKIASDLKKPNGLTVIT 169
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINT-----CEEMLQKGSLLCAVFSHS 181
+ F+ LP+ K G+GKVT + L+++ GI T C + + L +F
Sbjct: 170 EEN--AQDFLDKLPVNKFFGVGKVTSNTLKNL-GIKTGYDLRCLNLFE----LENIFKKR 222
Query: 182 TADFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQK 239
+ + G+ R RKS+ +E T S + D+ L E+ E + ++
Sbjct: 223 GYELY-KFARGIDDRPVEPNRVRKSVGAETTLSHNLNIDEEETRNILDELCEEVCHRLKS 281
Query: 240 EGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK-AEL-PVSLRLIGLR 297
G+TLTLK+K F TR+++L+ YI DI + LL+ E+ +RL+G+
Sbjct: 282 SEKFGKTLTLKIKYEDFTKITRSLSLEHYIDEYNDIRRGIDNLLRNVEMNGKQIRLLGVT 341
Query: 298 VTQFNEDK 305
++ ++ K
Sbjct: 342 ISNLSDKK 349
>gi|296449696|ref|ZP_06891466.1| DNA-directed DNA polymerase IV [Clostridium difficile NAP08]
gi|296261420|gb|EFH08245.1| DNA-directed DNA polymerase IV [Clostridium difficile NAP08]
Length = 365
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 102/308 (33%), Positives = 163/308 (52%), Gaps = 20/308 (6%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG+ +AMP +A CP +FV F Y S+ R +F +Y SLDEAYL
Sbjct: 51 ARKFGIHSAMPSAVAYNRCPYAVFVRPRFDVYKSVSEQIRDIFYRYTDLVEPLSLDEAYL 110
Query: 68 DITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP 126
D+T+ ++ I S IEIA++++ ++ E GLT SAGV+ N+ LAK+ SD+ KPNG V+
Sbjct: 111 DVTK--NKKNIDSSIEIAKQIKKDIFREVGLTSSAGVSYNKFLAKIASDLKKPNGLTVIT 168
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINT-----CEEMLQKGSLLCAVFSHS 181
+ F+ LP+ K G+GKVT + L+++ GI T C + + L +F
Sbjct: 169 EEN--AQDFLDKLPVNKFFGVGKVTSNTLKNL-GIKTGYDLRCLNLFE----LENIFKKR 221
Query: 182 TADFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQK 239
+ + G+ R RKS+ +E T S + D+ L E+ E + ++
Sbjct: 222 GYELY-KFARGIDDRPVEPNRVRKSVGAETTLSHNLNIDEEETRNILDELCEEVCHRLKS 280
Query: 240 EGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK-AEL-PVSLRLIGLR 297
G+TLTLK+K F TR+++L+ YI DI + LL+ E+ +RL+G+
Sbjct: 281 SEKFGKTLTLKIKYEDFTKITRSLSLEHYIDEYNDIRRGIDNLLRNVEMNGKQIRLLGVT 340
Query: 298 VTQFNEDK 305
++ ++ K
Sbjct: 341 ISNLSDKK 348
>gi|425056854|ref|ZP_18460293.1| putative DNA polymerase IV [Enterococcus faecium 504]
gi|403041417|gb|EJY52432.1| putative DNA polymerase IV [Enterococcus faecium 504]
Length = 373
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 101/304 (33%), Positives = 165/304 (54%), Gaps = 19/304 (6%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG+ +AM A +LCP+ IF P D KY+ S R+VF +Y S+DEAYL
Sbjct: 63 ARKFGIHSAMSAQKAYELCPQAIFKPGDHHKYSDISKQVREVFYRYTDIVEPVSIDEAYL 122
Query: 68 DITEV---CRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QF 123
D+TE C+ S I+IA ++ +++E LTCSAGV+ N+ LAK+ SD KP G
Sbjct: 123 DVTENKINCK----SAIKIARMIQANIWESDQLTCSAGVSYNKFLAKLASDYQKPRGITV 178
Query: 124 VLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHST 182
V P D + F+ +LPI K G+GK T + ++ GI T +++ + +L F
Sbjct: 179 VAPQD---AVPFLKALPIEKFHGVGKKTVPRMHEL-GIYTGKDLYECTEMMLIRNFGKMG 234
Query: 183 ADFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKE 240
+ V G+ + R RKS+ E T+ + ++A+L +L ++AE + +++
Sbjct: 235 YSLYRKVR-GIHDSPVNVTRERKSVGKEHTYGQPLQTEEAVL-TQLRQLAEKVEEALRRV 292
Query: 241 GLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRV 298
G+T+ LK++ + T+ VTL +YI E + AS++ + L V +RL+G+ +
Sbjct: 293 QKHGKTVVLKVRYTDYSTVTKRVTLPEYIYKKEALFYQASLIWEEILGVEKGIRLLGITL 352
Query: 299 TQFN 302
T +
Sbjct: 353 TNLD 356
>gi|255026659|ref|ZP_05298645.1| DNA polymerase IV [Listeria monocytogenes FSL J2-003]
Length = 356
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 105/301 (34%), Positives = 159/301 (52%), Gaps = 15/301 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGV +AMP A KLCP IF+ + Y S+ R++F +Y SLDEAYL
Sbjct: 51 ARKFGVHSAMPTRQAAKLCPNGIFIHGNMAHYVEVSNQIREIFSRYTDIIEPLSLDEAYL 110
Query: 68 DITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVL 125
D+TE ++G+ S +A E++ ++Y E GLT SAGV+ N+ +AK+ SD KP G V
Sbjct: 111 DVTE--NKKGMKSATMVAREIQQTIYRELGLTASAGVSFNKFIAKIASDFKKPAGITVVA 168
Query: 126 PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTA 183
P + A F+ +P+ K G+GKVT L + GI T ++ + L+ + H
Sbjct: 169 PEEAEA---FLEQIPVTKFYGVGKVTAEKLHRL-GIETGADLKKWSEWDLIRELHKHGYH 224
Query: 184 DFFLSVGLGLGSTNTPQARFRKSISSERTFSVTE-DKALLYRKLAEIAEMLSADMQKEGL 242
+ G N P R RKS+ E TF D +L + L + A+ + + K
Sbjct: 225 LYRHVRGRSNNIVN-PH-RDRKSVGKETTFEFNVLDSRVLEQSLMQFAKKVEERLIKLQK 282
Query: 243 RGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQ 300
G+T+ LKL+ + F T+ +TL +Y + + I + A++LL+ S+RLIGL VT
Sbjct: 283 HGKTVVLKLRYSDFTTITKRLTLNEYTNDASQIYQAAALLLRESYTGQDSIRLIGLTVTN 342
Query: 301 F 301
Sbjct: 343 L 343
>gi|238784453|ref|ZP_04628462.1| DNA polymerase IV [Yersinia bercovieri ATCC 43970]
gi|238714622|gb|EEQ06625.1| DNA polymerase IV [Yersinia bercovieri ATCC 43970]
Length = 352
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 85/211 (40%), Positives = 122/211 (57%), Gaps = 12/211 (5%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARR+GVR+AMP +A KLCP+L +P Y S R++F +Y P SLDEAYL
Sbjct: 48 ARRYGVRSAMPTAMALKLCPQLKVIPGRMAAYKEASLHIREIFARYTPLIEPLSLDEAYL 107
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+++ C S IA+E+R S+ +E LT SAG+AP + LAK+ SD+NKPNGQ+V+
Sbjct: 108 DVSD-CLACSGSATLIAQEIRQSIADELNLTASAGIAPIKFLAKIASDLNKPNGQYVITP 166
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLL--CAVFSHSTA 183
D+ ++ F+ LP+ KI G+GKVT L++V G+ TC ++ + LL F H
Sbjct: 167 DQ--ILPFLHDLPLSKIPGVGKVTAKRLQEV-GLVTCSDVQNYPQAELLKRFGKFGH--- 220
Query: 184 DFFLSVGLGLGSTNTPQARFRKSISSERTFS 214
G+ + R RKS+ ERT +
Sbjct: 221 -VLWERSHGIDERDVSPDRLRKSVGVERTLA 250
>gi|431745421|ref|ZP_19534267.1| DNA polymerase IV [Enterococcus faecium E2134]
gi|430610468|gb|ELB47613.1| DNA polymerase IV [Enterococcus faecium E2134]
Length = 373
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 101/304 (33%), Positives = 164/304 (53%), Gaps = 19/304 (6%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG+ +AM A +LCP+ IF P D KY+ S R+VF +Y S+DEAYL
Sbjct: 63 ARKFGIHSAMSAQKAYELCPQAIFKPGDHHKYSDISKQVREVFYRYTDIVEPVSIDEAYL 122
Query: 68 DITEV---CRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QF 123
D+TE C+ S I+IA ++ ++E LTCSAGV+ N+ LAK+ SD KP G
Sbjct: 123 DVTENKINCK----SAIKIARMIQADIWESVQLTCSAGVSYNKFLAKLASDYQKPRGITV 178
Query: 124 VLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHST 182
V P D + F+ +LPI K G+GK T + ++ GI T +++ + +L F
Sbjct: 179 VAPQD---AVPFLKALPIEKFHGVGKRTVPRMHEL-GIYTGKDLYECTEMMLIRNFGKMG 234
Query: 183 ADFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKE 240
+ V G+ + R RKS+ E T+ + ++A+L +L ++AE + +++
Sbjct: 235 YSLYRKVR-GIHDSPVNVTRERKSVGKEHTYGQPLQTEEAVL-TQLRQLAEKVEEALRRV 292
Query: 241 GLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRV 298
G+T+ LK++ + T+ VTL +YI E + AS++ + L V +RL+G+ +
Sbjct: 293 QKHGKTVVLKVRYTDYSTVTKRVTLPEYIYKKEALFYQASLIWEEILGVEKGIRLLGITL 352
Query: 299 TQFN 302
T +
Sbjct: 353 TNLD 356
>gi|223044002|ref|ZP_03614042.1| DNA polymerase IV (Pol IV) [Staphylococcus capitis SK14]
gi|417906353|ref|ZP_12550143.1| DNA polymerase IV [Staphylococcus capitis VCU116]
gi|222442545|gb|EEE48650.1| DNA polymerase IV (Pol IV) [Staphylococcus capitis SK14]
gi|341598009|gb|EGS40527.1| DNA polymerase IV [Staphylococcus capitis VCU116]
Length = 356
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 100/305 (32%), Positives = 157/305 (51%), Gaps = 11/305 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++GV +AMP A KLCP +V + F Y S +F Y SLDEAYL
Sbjct: 50 ARKYGVHSAMPMSQAHKLCPNGYYVTSRFGAYREVSQQIMDIFRSYTEIVEPMSLDEAYL 109
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
DIT + R + IA +R +YE+ LT SAGV+ N+ LAK+ S +NKPNG V+
Sbjct: 110 DITHLVRP-DMPASRIANYIRRDIYEQTQLTASAGVSYNKFLAKLASGMNKPNGMTVI-- 166
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFF 186
D V + +L I + G+GK ++ ++ + GI T +++ K L +F +
Sbjct: 167 DYQNVHEILMNLDIGEFPGVGKASKKVMHN-NGIYTGQDLYDKDEFELIRLFGKRGRGLY 225
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRG 244
+ G+ + R RKS+ +ERTFS V +D +L RK+ E++ + + K G
Sbjct: 226 -NKARGIDNNEVKATRVRKSVGTERTFSTDVNDDDEIL-RKVWELSGKTAERLNKLQKSG 283
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRVTQFN 302
+T+T+K+KT +E ++ +L+ + S DI A L + + +RLIG+ V
Sbjct: 284 KTVTVKIKTFKYETLSKQTSLRDSVQSENDIYNIAYTLYNDLKDPDIPIRLIGVTVGNLE 343
Query: 303 EDKVR 307
+ R
Sbjct: 344 QSSYR 348
>gi|293572065|ref|ZP_06683076.1| DNA polymerase IV [Enterococcus faecium E980]
gi|291607850|gb|EFF37161.1| DNA polymerase IV [Enterococcus faecium E980]
Length = 372
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 104/309 (33%), Positives = 162/309 (52%), Gaps = 29/309 (9%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG+ +AM A +LCP+ IF P D KY+ S R+VF Y S+DEAYL
Sbjct: 62 ARKFGIHSAMSAQKAYELCPQAIFKPGDHHKYSEISKQVREVFYHYTDIVEPVSIDEAYL 121
Query: 68 DITEV---CRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QF 123
D+TE C+ S I+IA ++ ++E LTCSAGV+ N+ LAK+ SD KP G
Sbjct: 122 DVTENKINCK----SAIKIARMIQADIWERVQLTCSAGVSYNKFLAKLASDYQKPRGITV 177
Query: 124 VLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINT------CEEMLQKGSLLCAV 177
V P D + F+ +LPI K G+GK T + ++ GI T C EM+ L
Sbjct: 178 VAPQD---AVPFLKALPIEKFHGVGKKTVPRMHEL-GIYTGKDLYECTEMM-----LIRN 228
Query: 178 FSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSA 235
F + V G+ + R RKS+ E T+ + ++A+L +L ++AE +
Sbjct: 229 FGKMGYSLYRKVR-GIHDSPVNVTRERKSVGKEHTYGQPLQTEEAVL-AQLRQLAEKVEE 286
Query: 236 DMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRL 293
+++ G+T+ LK++ + T+ VTL +YI E + AS++ + L V +RL
Sbjct: 287 ALRRVQKHGKTVVLKVRYTDYSTVTKRVTLPEYIYKKEALFYQASLIWEEILGVEKGIRL 346
Query: 294 IGLRVTQFN 302
+G+ +T +
Sbjct: 347 LGITLTNLD 355
>gi|430840671|ref|ZP_19458594.1| DNA polymerase IV [Enterococcus faecium E1007]
gi|431741951|ref|ZP_19530850.1| DNA polymerase IV [Enterococcus faecium E2039]
gi|430494877|gb|ELA71095.1| DNA polymerase IV [Enterococcus faecium E1007]
gi|430600799|gb|ELB38426.1| DNA polymerase IV [Enterococcus faecium E2039]
Length = 373
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 104/309 (33%), Positives = 162/309 (52%), Gaps = 29/309 (9%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG+ +AM A +LCP+ IF P D KY+ S R+VF Y S+DEAYL
Sbjct: 63 ARKFGIHSAMSAQKAYELCPQAIFKPGDHHKYSEISKQVREVFYHYTDIVEPVSIDEAYL 122
Query: 68 DITEV---CRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QF 123
D+TE C+ S I+IA ++ ++E LTCSAGV+ N+ LAK+ SD KP G
Sbjct: 123 DVTENKINCK----SAIKIARMIQADIWERVQLTCSAGVSYNKFLAKLASDYQKPRGITV 178
Query: 124 VLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINT------CEEMLQKGSLLCAV 177
V P D + F+ +LPI K G+GK T + ++ GI T C EM+ L
Sbjct: 179 VAPQD---AVPFLKALPIEKFHGVGKKTVPRMHEL-GIYTGKDLYECTEMM-----LIRN 229
Query: 178 FSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSA 235
F + V G+ + R RKS+ E T+ + ++A+L +L ++AE +
Sbjct: 230 FGKMGYSLYRKVR-GIHDSPVNVTRERKSVGKEHTYGQPLQTEEAVL-AQLRQLAEKVEE 287
Query: 236 DMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRL 293
+++ G+T+ LK++ + T+ VTL +YI E + AS++ + L V +RL
Sbjct: 288 ALRRVQKHGKTVVLKVRYTDYSTVTKRVTLPEYIYKKEALFYQASLIWEEILGVEKGIRL 347
Query: 294 IGLRVTQFN 302
+G+ +T +
Sbjct: 348 LGITLTNLD 356
>gi|145595751|ref|YP_001160048.1| DNA-directed DNA polymerase [Salinispora tropica CNB-440]
gi|145305088|gb|ABP55670.1| DNA-directed DNA polymerase [Salinispora tropica CNB-440]
Length = 419
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 100/297 (33%), Positives = 149/297 (50%), Gaps = 7/297 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARR+GVR+AMP AR LCP +F+P DFT YT S ++F P SLDEA+L
Sbjct: 69 ARRYGVRSAMPTARARALCPHAVFLPPDFTAYTTASRRVMQIFRDVTPLVEPLSLDEAFL 128
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+ R G IA +R V E GLTCS GVA ++ +AK+ S KP+G V+P
Sbjct: 129 DVAGAQRLFGRPS-AIARLIRERVATEVGLTCSVGVASSKFVAKLGSTRAKPDGLLVVPT 187
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFF 186
+ V+ F+ LP+ + G+G+ + LR G+ T E+ Q +L ++ A
Sbjct: 188 AQ--VLDFLHPLPVEALWGVGERSAETLRR-LGLVTVGELAQAPDGMLRRALGNAAARHL 244
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
+ G R KS+ +E TF V D+ + R L +AE + A +++ G GR
Sbjct: 245 HELAWGRDPRRVTPERGEKSVGAEVTFDVDVTDRREIRRALLGLAEKVGARLRRSGQVGR 304
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV-SLRLIGLRVTQF 301
T+ LK++ A F +R+ +L ++ A L P +RL+G+R Q
Sbjct: 305 TVALKVRLADFRTVSRSRSLDVPTDVGREMFDIAWALYTTLDPGEPIRLVGVRAEQI 361
>gi|269960538|ref|ZP_06174910.1| DNA polymerase IV [Vibrio harveyi 1DA3]
gi|269834615|gb|EEZ88702.1| DNA polymerase IV [Vibrio harveyi 1DA3]
Length = 354
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 117/317 (36%), Positives = 159/317 (50%), Gaps = 36/317 (11%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR+AMP A +LCP L+ VP Y S R +F +Y SLDEAYL
Sbjct: 52 ARKFGVRSAMPTARALQLCPNLLVVPGRMHVYKQVSQQIRAIFERYTSLIEPLSLDEAYL 111
Query: 68 DITE--VCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL 125
D+T+ VCR S IAE +R + E G+T SAG+AP + LAKV SD+NKPNGQFV+
Sbjct: 112 DVTDSTVCRG---SATLIAESIRNDIRNELGITASAGIAPIKFLAKVASDMNKPNGQFVI 168
Query: 126 PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTAD 184
P D+ V + LP+ KI G+GKV+ L G CE++ L F A
Sbjct: 169 PPDK--VQEVVDKLPLEKIPGVGKVSLEKLHQA-GFYLCEDIKNSDYRELLRQFGRQGAS 225
Query: 185 FFLSVGLGLGSTNTPQARFRKSISSERTFS-----------VTEDKALLYRKLAEIAEML 233
+ G+ R RKS+ ERTFS V EDK LY +L E
Sbjct: 226 LW-KRSHGIDDREVVVERERKSVGVERTFSENISTYDECWKVIEDK--LYPELERRLEKA 282
Query: 234 SAD--MQKEGLRGRTLTLKLKTASFEVRT-RAVTLQKYISSSEDILKHASVLLKAELPVS 290
S D + K+G +KLK A F++ T + Q + + +L+ +LK +
Sbjct: 283 SPDKSIIKQG-------IKLKFADFQLTTIEHIHPQLELDDFKVLLRD---ILKRQNGRE 332
Query: 291 LRLIGLRVTQFNEDKVR 307
+RL+GL V E++ R
Sbjct: 333 IRLLGLSVMLKPEEQAR 349
>gi|374586349|ref|ZP_09659441.1| DNA polymerase IV [Leptonema illini DSM 21528]
gi|373875210|gb|EHQ07204.1| DNA polymerase IV [Leptonema illini DSM 21528]
Length = 372
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 107/301 (35%), Positives = 163/301 (54%), Gaps = 15/301 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG+R+AM A +LCP+ +FV F Y SD R +F Y SLDEAYL
Sbjct: 68 ARKFGIRSAMACSKAYRLCPDAVFVFPRFDVYKEVSDQIRAIFVSYTDLVEPLSLDEAYL 127
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLP 126
D+T + + + IA +++ + EE GLT SAGVA + LAK+ S +NKP+G +LP
Sbjct: 128 DVTS-NKFQIPYAVTIARQIKARIKEETGLTASAGVASGKFLAKIASGMNKPDGLTVILP 186
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADF 185
+ +A F+ +LP+ G+GKVTE +++ GI T ++ + S L ++F S
Sbjct: 187 DQAIA---FLEALPVGDFFGVGKVTEKKMKE-HGIFTGADLKSRSLSELVSLFGKSGMHL 242
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRG 244
+ V G+ R RKS+ E TFS D L ++L ++AE LS + + G G
Sbjct: 243 YRLV-RGIDEAPVIPFRERKSVGIEDTFSADVSDVVELMQRLRQLAEGLSFRLARHGKPG 301
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL----PVSLRLIGLRVTQ 300
RT+T+K+K A FE +++ T +++ + + LL+ L PV RL+GL V
Sbjct: 302 RTITVKVKYADFETHSKSETRSSIPVAADALHQMGRSLLEQLLEEGRPV--RLLGLSVHG 359
Query: 301 F 301
F
Sbjct: 360 F 360
>gi|242371796|ref|ZP_04817370.1| DNA polymerase IV [Staphylococcus epidermidis M23864:W1]
gi|242350497|gb|EES42098.1| DNA polymerase IV [Staphylococcus epidermidis M23864:W1]
Length = 356
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 102/305 (33%), Positives = 156/305 (51%), Gaps = 11/305 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++GV +AMP A KLCP +V + F Y S ++F Y SLDEAYL
Sbjct: 50 ARKYGVHSAMPMSQAHKLCPNGYYVTSRFGAYREASQQIMEIFRSYTEIVEPMSLDEAYL 109
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
DIT + R + IA +R +YE+ LT SAGV+ N+ LAK+ S +NKPNG V+
Sbjct: 110 DITHLVRP-DMPASRIANYIRRDIYEQTQLTASAGVSYNKFLAKLASGMNKPNGMTVI-- 166
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFF 186
D V + L I G+GK ++ ++ D GI T +++ K L +F +
Sbjct: 167 DYQNVHEILMHLDIGDFPGVGKASKKVMHDN-GIFTGQDLYNKDEFELIRLFGKRGRGLY 225
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRG 244
+ G+ + R RKS+ +ERTFS V +D +L RK+ E++ + + K G
Sbjct: 226 -NKARGIDNNEVKATRVRKSVGTERTFSTDVNDDDEIL-RKVWELSGKTAERLNKLQKSG 283
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRVTQFN 302
+T+T+K+KT +E ++ +L+ + S DI A L + V +RLIG+ V
Sbjct: 284 KTVTVKIKTFQYETLSKQTSLRDSVQSETDIYNIAYSLYNELKDPDVPIRLIGVTVGNLE 343
Query: 303 EDKVR 307
+ R
Sbjct: 344 QSSYR 348
>gi|315303932|ref|ZP_07874389.1| DNA polymerase IV [Listeria ivanovii FSL F6-596]
gi|313627694|gb|EFR96370.1| DNA polymerase IV [Listeria ivanovii FSL F6-596]
Length = 356
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 106/299 (35%), Positives = 158/299 (52%), Gaps = 11/299 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGV +AMP A KLCP IF+ + + Y S R++F +Y SLDEAYL
Sbjct: 51 ARKFGVHSAMPTKQAVKLCPHGIFIHGNMSHYVEVSGQIREIFSRYTDIIEPLSLDEAYL 110
Query: 68 DITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP 126
D+TE ++G+ S IA +++ ++Y E GLT SAGV+ N+ +AK+ SD KP G V+
Sbjct: 111 DVTE--NKKGMKSATLIARDIQQTIYRELGLTASAGVSFNKFIAKIASDFQKPAGITVVS 168
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFF 186
D F+ +P+ K G+GKVT L + GI T + L+K S + +
Sbjct: 169 PDEAE--AFLEKIPVTKFYGVGKVTAEKLHRL-GIETGAD-LKKWSEWDLIRELHKQGYH 224
Query: 187 LSVGLGLGSTNTPQA-RFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLRG 244
L + S N R RKS+ E TF D+ +L + L A+ + + K G
Sbjct: 225 LYRHVRGRSNNVVNPHRDRKSVGKETTFEFNILDERILEQNLMIFAKKVEERLTKLQKHG 284
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL--PVSLRLIGLRVTQF 301
+T+ LKL+ + F T+ +TL +YI ++ I + A++LL S+RLIGL VT
Sbjct: 285 KTVVLKLRYSDFTTVTKRLTLNEYIHDAKQIYQAAALLLSETYTGKESIRLIGLTVTNL 343
>gi|121606049|ref|YP_983378.1| DNA-directed DNA polymerase [Polaromonas naphthalenivorans CJ2]
gi|120595018|gb|ABM38457.1| DNA-directed DNA polymerase [Polaromonas naphthalenivorans CJ2]
Length = 431
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 108/327 (33%), Positives = 159/327 (48%), Gaps = 15/327 (4%)
Query: 7 SARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAY 66
+AR+FG+ +AM A KLCP+ I +P DF + +S L + + P +DE Y
Sbjct: 96 AARQFGIGSAMGMMKAAKLCPQAIVLPVDFDEIRRFSRLFKSTIAEVAPLMQDRGIDEVY 155
Query: 67 LDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP 126
+D T V + G +A ++ +++E+ GLTCS GVAPN+LLAK+ S+ NKPNG ++
Sbjct: 156 IDFTGVPGGQREGGRALARLIQRAIFEKTGLTCSIGVAPNKLLAKMASEFNKPNGISIVR 215
Query: 127 NDRMAVMTFISSLPIRKIGGIG-KVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHSTAD 184
+ T I L +RKI GIG K E + R GI T E+ L + F +T
Sbjct: 216 EADL--QTLIWPLNVRKINGIGPKAGEKLAR--LGIQTIGELAALDRQFLISQFGKATGA 271
Query: 185 FFLSVGLGLGSTNTPQARFRKSISSERTFS----VTEDKALLYRKLAEIAEMLSADMQKE 240
+ V G + S+S E TF DKA L + E ++AD+Q++
Sbjct: 272 WMHEVAWGRDDSPVVTESEPVSMSRETTFERDLHAVRDKAELGAIFTRLCEQVAADLQRK 331
Query: 241 GLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK-AELPVSLRLIGLRVT 299
G RT+ +KL+ F + TR T Y + I K A + LK L LRL+G+R +
Sbjct: 332 GYVARTIGIKLRYDDFRIATRDQTAPAYTDDARTIRKLAGLCLKRVPLEQRLRLLGVRAS 391
Query: 300 QFNEDKVRAPSDPTQKTLTNFMTSGHA 326
V+A P + SG A
Sbjct: 392 AL----VKAGEAPVHEQNWPSAQSGRA 414
>gi|374674123|dbj|BAL52014.1| DNA polymerase IV [Lactococcus lactis subsp. lactis IO-1]
Length = 364
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 102/310 (32%), Positives = 167/310 (53%), Gaps = 24/310 (7%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FG+ +AM A LCP+ IF+ ++ KYT S R++F +Y + AAS+DEAYL
Sbjct: 61 ARAFGIHSAMSAKEAYDLCPQAIFISGNYEKYTKVSKQVREIFKRYTDDIEAASIDEAYL 120
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLP 126
D+TE + S I+IA+ ++ ++ E GLTCSAGV+ N+ LAK+ SD KP+G ++P
Sbjct: 121 DVTE-NKIGAQSAIKIAKLIQHDIFVELGLTCSAGVSYNKFLAKIASDYEKPHGLTLIMP 179
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL--LCAVFSHSTAD 184
+ + F++ LP+ K G+GK T L + N + LQK L F +
Sbjct: 180 EE---ALEFLAKLPVEKFHGVGKATVPKLHALGFFNGGD--LQKADPVDLAERFGVYGWE 234
Query: 185 FFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLY------RKLAEIAEMLSADMQ 238
+ G+ ++ R RKS+ ERT+ LLY +L++I+ +S ++
Sbjct: 235 LYQKAN-GIHNSKVKNYRERKSVGKERTYG-----KLLYLPDDIKAELSKISGKVSDSLK 288
Query: 239 KEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL---LKAELPVSLRLIG 295
L+G + LKL+ + F T+ +L + + S E+I + A + L+ + + +RL+G
Sbjct: 289 SHQLKGSIVILKLRYSDFTTLTKRKSLAEKLESPEEIAEVAQEIFEELEYDESLGVRLLG 348
Query: 296 LRVTQFNEDK 305
+ VT+F K
Sbjct: 349 VTVTEFGVPK 358
>gi|424047473|ref|ZP_17785032.1| DNA polymerase IV [Vibrio cholerae HENC-03]
gi|408883966|gb|EKM22729.1| DNA polymerase IV [Vibrio cholerae HENC-03]
Length = 342
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 117/317 (36%), Positives = 159/317 (50%), Gaps = 36/317 (11%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR+AMP A +LCP L+ VP Y S R +F +Y SLDEAYL
Sbjct: 40 ARKFGVRSAMPTARALQLCPNLLVVPGRMHVYKQVSQQIRAIFERYTSLIEPLSLDEAYL 99
Query: 68 DITE--VCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL 125
D+T+ VCR S IAE +R + E G+T SAG+AP + LAKV SD+NKPNGQFV+
Sbjct: 100 DVTDSTVCRG---SATLIAESIRNDIRNELGITASAGIAPIKFLAKVASDMNKPNGQFVI 156
Query: 126 PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTAD 184
P D+ V + LP+ KI G+GKV+ L G CE++ L F A
Sbjct: 157 PPDK--VQEVVDKLPLEKIPGVGKVSLEKLHQA-GFYLCEDIKNSDYRELLRQFGRQGAS 213
Query: 185 FFLSVGLGLGSTNTPQARFRKSISSERTFS-----------VTEDKALLYRKLAEIAEML 233
+ G+ R RKS+ ERTFS V EDK LY +L E
Sbjct: 214 LW-KRSHGIDDREVVVERERKSVGVERTFSENISTYDECWKVIEDK--LYPELERRLEKA 270
Query: 234 SAD--MQKEGLRGRTLTLKLKTASFEVRT-RAVTLQKYISSSEDILKHASVLLKAELPVS 290
S D + K+G +KLK A F++ T + Q + + +L+ +LK +
Sbjct: 271 SPDKSIIKQG-------IKLKFADFQLTTIEHIHPQLELEDFKVLLRD---ILKRQNGRE 320
Query: 291 LRLIGLRVTQFNEDKVR 307
+RL+GL V E++ R
Sbjct: 321 IRLLGLSVMLKPEEQAR 337
>gi|386617769|ref|YP_006137349.1| DNA polymerase IV [Escherichia coli NA114]
gi|387828289|ref|YP_003348226.1| DNA polymerase IV [Escherichia coli SE15]
gi|432396106|ref|ZP_19638898.1| DNA polymerase IV [Escherichia coli KTE25]
gi|432420390|ref|ZP_19662948.1| DNA polymerase IV [Escherichia coli KTE178]
gi|432498522|ref|ZP_19740302.1| DNA polymerase IV [Escherichia coli KTE216]
gi|432557297|ref|ZP_19793990.1| DNA polymerase IV [Escherichia coli KTE49]
gi|432693062|ref|ZP_19928277.1| DNA polymerase IV [Escherichia coli KTE162]
gi|432709111|ref|ZP_19944180.1| DNA polymerase IV [Escherichia coli KTE6]
gi|432721852|ref|ZP_19956780.1| DNA polymerase IV [Escherichia coli KTE17]
gi|432726347|ref|ZP_19961230.1| DNA polymerase IV [Escherichia coli KTE18]
gi|432740031|ref|ZP_19974753.1| DNA polymerase IV [Escherichia coli KTE23]
gi|432917226|ref|ZP_20121880.1| DNA polymerase IV [Escherichia coli KTE173]
gi|432924504|ref|ZP_20126791.1| DNA polymerase IV [Escherichia coli KTE175]
gi|432979781|ref|ZP_20168562.1| DNA polymerase IV [Escherichia coli KTE211]
gi|432989343|ref|ZP_20178013.1| DNA polymerase IV [Escherichia coli KTE217]
gi|433095136|ref|ZP_20281354.1| DNA polymerase IV [Escherichia coli KTE139]
gi|433104413|ref|ZP_20290436.1| DNA polymerase IV [Escherichia coli KTE148]
gi|433109432|ref|ZP_20295314.1| DNA polymerase IV [Escherichia coli KTE150]
gi|281177446|dbj|BAI53776.1| DNA polymerase IV [Escherichia coli SE15]
gi|333968270|gb|AEG35075.1| DNA polymerase IV [Escherichia coli NA114]
gi|430918488|gb|ELC39489.1| DNA polymerase IV [Escherichia coli KTE25]
gi|430947555|gb|ELC67252.1| DNA polymerase IV [Escherichia coli KTE178]
gi|431032116|gb|ELD44827.1| DNA polymerase IV [Escherichia coli KTE216]
gi|431094350|gb|ELD99981.1| DNA polymerase IV [Escherichia coli KTE49]
gi|431237204|gb|ELF32204.1| DNA polymerase IV [Escherichia coli KTE162]
gi|431252832|gb|ELF46346.1| DNA polymerase IV [Escherichia coli KTE6]
gi|431268597|gb|ELF60066.1| DNA polymerase IV [Escherichia coli KTE17]
gi|431276455|gb|ELF67475.1| DNA polymerase IV [Escherichia coli KTE18]
gi|431286160|gb|ELF76986.1| DNA polymerase IV [Escherichia coli KTE23]
gi|431447878|gb|ELH28598.1| DNA polymerase IV [Escherichia coli KTE173]
gi|431450145|gb|ELH30637.1| DNA polymerase IV [Escherichia coli KTE175]
gi|431496402|gb|ELH75985.1| DNA polymerase IV [Escherichia coli KTE211]
gi|431498588|gb|ELH77773.1| DNA polymerase IV [Escherichia coli KTE217]
gi|431620014|gb|ELI88902.1| DNA polymerase IV [Escherichia coli KTE139]
gi|431632438|gb|ELJ00726.1| DNA polymerase IV [Escherichia coli KTE150]
gi|431634437|gb|ELJ02678.1| DNA polymerase IV [Escherichia coli KTE148]
Length = 351
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 107/302 (35%), Positives = 161/302 (53%), Gaps = 16/302 (5%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR+AMP +A KLCP L +P F Y S+ R++F +Y SLDEAYL
Sbjct: 48 ARKFGVRSAMPTGMALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYL 107
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-P 126
D+T+ G S IA+E+R +++ E LT SAGVAP + LAK+ SD+NKPNGQFV+ P
Sbjct: 108 DVTDSVHCHG-SATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITP 166
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHST-ADF 185
+ V TF+ +LP+ KI G+GKV+ L + G+ TC + +QK L+ +
Sbjct: 167 AE---VPTFLQTLPLAKIPGVGKVSAAKL-EAMGLRTCGD-VQKCDLVMLLKRFGKFGRI 221
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFS-----VTEDKALLYRKLAEIAEMLSADMQKE 240
G+ + R RKS+ ERT + +E +A++ R E+ L A ++ +
Sbjct: 222 LWERSQGIDERDVNSERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRL-AKVKPD 280
Query: 241 GLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQ 300
L R +KLK F+ T+ + ++ S+ I + +RL+GL VT
Sbjct: 281 LLIARQ-GVKLKFDDFQQTTQEHVWPR-LNKSDLIATARKTWDERRGGRGVRLVGLHVTL 338
Query: 301 FN 302
+
Sbjct: 339 LD 340
>gi|157147182|ref|YP_001454501.1| DNA polymerase IV [Citrobacter koseri ATCC BAA-895]
gi|189027658|sp|A8AKQ2.1|DPO4_CITK8 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|157084387|gb|ABV14065.1| hypothetical protein CKO_02960 [Citrobacter koseri ATCC BAA-895]
Length = 351
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 110/305 (36%), Positives = 161/305 (52%), Gaps = 22/305 (7%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR+AMP +A KLCP L +P F Y S R++F +Y SLDEAYL
Sbjct: 48 ARKFGVRSAMPTGMALKLCPHLTLLPGRFEAYKEASQHIREIFSRYTSRIEPLSLDEAYL 107
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-P 126
D+T+ G S IA+E+R +++ E LT SAG+AP + LAK+ SD+NKPNGQ+V+ P
Sbjct: 108 DVTDSTYCHG-SATLIAQEIRQTIFNELQLTASAGIAPVKFLAKIASDLNKPNGQYVITP 166
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADF- 185
D V F+ +LP+ KI G+GKV+ L + G+ TCE++ QK L A+ F
Sbjct: 167 AD---VPEFLKTLPLGKIPGVGKVSAARL-ETMGLRTCEDV-QKYDL--AMLLKRFGKFG 219
Query: 186 --FLSVGLGLGSTNTPQARFRKSISSERTFS-----VTEDKALLYRKLAEIAEMLSADMQ 238
G+ + R RKSI ERT + E +A++ R E+ L A ++
Sbjct: 220 RVLWERSQGIDERDVNNERLRKSIGVERTLAEDIHEWAECEAIIERLYPELERRL-AKVK 278
Query: 239 KEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL-PVSLRLIGLR 297
+ L R +KLK F++ T+ + S +D++ A +RL+GL
Sbjct: 279 PDLLIARQ-GVKLKFNDFQLTTQEHVWPRL--SKDDLITTARKTWNERRGGRGVRLVGLH 335
Query: 298 VTQFN 302
VT +
Sbjct: 336 VTLLD 340
>gi|257869791|ref|ZP_05649444.1| DNA directed DNA polymerase [Enterococcus gallinarum EG2]
gi|257803955|gb|EEV32777.1| DNA directed DNA polymerase [Enterococcus gallinarum EG2]
Length = 374
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 97/302 (32%), Positives = 160/302 (52%), Gaps = 15/302 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++G+ +AM A +LCP +F+P + KY S R++F +Y S+DEAYL
Sbjct: 66 ARQYGIHSAMSAQKAFELCPHAVFIPGNHQKYREISQQVREIFGRYTDVIEPVSIDEAYL 125
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLP 126
D+T V + S I+IA ++ +++ LTCSAGV+ N+ LAK+ SD +KP G V+P
Sbjct: 126 DVT-VNKINCPSAIKIARMIQQDIWQTTQLTCSAGVSYNKFLAKLSSDFHKPRGLTVVMP 184
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADF 185
D + F+ LPI K GIGK T + ++ GI ++ + + L F
Sbjct: 185 ED---AVVFLKKLPIDKFHGIGKKTVPRMHEL-GIYKGSDLYEWSEMALIQEFGKMGYSL 240
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFS---VTEDKALLYRKLAEIAEMLSADMQKEGL 242
+ V G+ + R RKS+ E T+ TED+ + +L +AE + +++
Sbjct: 241 YRKVR-GIHDSPVSVTRERKSVGKEHTYGNALTTEDQVI--SQLRNLAEEVERSLKRTQK 297
Query: 243 RGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQ 300
G+T+ LK++ A + T+ VTL +Y+ E I AS++ + L + +RL+G+ VT
Sbjct: 298 HGKTVVLKVRYADYSTITKRVTLPEYMHKKEAIFSQASLIWEEILGIEKGIRLLGITVTN 357
Query: 301 FN 302
+
Sbjct: 358 LD 359
>gi|315504588|ref|YP_004083475.1| DNA-directed DNA polymerase [Micromonospora sp. L5]
gi|315411207|gb|ADU09324.1| DNA-directed DNA polymerase [Micromonospora sp. L5]
Length = 419
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 103/314 (32%), Positives = 157/314 (50%), Gaps = 13/314 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARR+GVR+AMP AR LCP +++P DFT YT S ++F P SLDEA+L
Sbjct: 69 ARRYGVRSAMPTARARALCPGAVYLPPDFTAYTEASRAVMRIFRDVTPLVEPLSLDEAFL 128
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+ R G +IA +R V EE LTCS GV P++ +AK+ S KP+G V+P
Sbjct: 129 DVAGARRLFGRPA-DIAALIRRRVAEEQRLTCSVGVGPSKFVAKLGSTRAKPDGLLVVPA 187
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHSTADFF 186
R V+ F+ LP+ + G+G+ + LR G+ T ++ + LL ++A
Sbjct: 188 AR--VLEFLHPLPVSALWGVGERSADALRR-LGLRTVRDLAEAPAGLLRRAVGEASAAHL 244
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
+ G + KSI +E TF D + R L +A+ A ++ G GR
Sbjct: 245 HELAWGRDPRGVTPEQVEKSIGAEVTFDTDVSDPDEIRRSLLALADKAGARLRAAGQVGR 304
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV-SLRLIGLRVTQFNED 304
T++LK++ A F +R+ TL ++ ++ A L A P +RL+G+R+
Sbjct: 305 TVSLKVRFADFRTISRSRTLAVPTDTAREMFDTAWALWGALAPGEPVRLVGVRMEGL--- 361
Query: 305 KVRAPSDPTQKTLT 318
AP+ T + LT
Sbjct: 362 ---APAGETPQQLT 372
>gi|302868942|ref|YP_003837579.1| DNA-directed DNA polymerase [Micromonospora aurantiaca ATCC 27029]
gi|302571801|gb|ADL48003.1| DNA-directed DNA polymerase [Micromonospora aurantiaca ATCC 27029]
Length = 419
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 103/314 (32%), Positives = 157/314 (50%), Gaps = 13/314 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARR+GVR+AMP AR LCP +++P DFT YT S ++F P SLDEA+L
Sbjct: 69 ARRYGVRSAMPTARARALCPGAVYLPPDFTAYTEASRAVMRIFRDVTPLVEPLSLDEAFL 128
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+ R G +IA +R V EE LTCS GV P++ +AK+ S KP+G V+P
Sbjct: 129 DVAGARRLFGRPA-DIAALIRRRVAEEQRLTCSVGVGPSKFVAKLGSTRAKPDGLLVVPA 187
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHSTADFF 186
R V+ F+ LP+ + G+G+ + LR G+ T ++ + LL ++A
Sbjct: 188 AR--VLEFLHPLPVSALWGVGERSADALRR-LGLRTVRDLAEAPAGLLRRAVGEASAAHL 244
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
+ G + KSI +E TF D + R L +A+ A ++ G GR
Sbjct: 245 HELAWGRDPRGVTPEQVEKSIGAEVTFDTDVSDPDEIRRSLLALADKAGARLRAAGQVGR 304
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV-SLRLIGLRVTQFNED 304
T++LK++ A F +R+ TL ++ ++ A L A P +RL+G+R+
Sbjct: 305 TVSLKVRFADFRTISRSRTLAVPTDTAREMFDTAWALWGALAPGEPVRLVGVRMEGL--- 361
Query: 305 KVRAPSDPTQKTLT 318
AP+ T + LT
Sbjct: 362 ---APAGETPQQLT 372
>gi|431183686|ref|ZP_19499994.1| DNA polymerase IV [Enterococcus faecium E1620]
gi|430573272|gb|ELB12096.1| DNA polymerase IV [Enterococcus faecium E1620]
Length = 376
Score = 146 bits (369), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 101/304 (33%), Positives = 164/304 (53%), Gaps = 19/304 (6%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG+ +AM A +LCP+ IF P D KY+ S R+VF +Y S+DEAYL
Sbjct: 63 ARKFGIHSAMSAQKAYELCPQAIFKPGDHHKYSDISKQVREVFYRYTDIVEPVSIDEAYL 122
Query: 68 DITEV---CRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QF 123
D+TE C+ S I+IA ++ ++E LTCSAGV+ N+ LAK+ SD KP G
Sbjct: 123 DVTENKINCK----SAIKIARMIQADIWESVQLTCSAGVSYNKFLAKLASDYQKPRGITV 178
Query: 124 VLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHST 182
V P D + F+ +LPI K G+GK T + ++ GI T +++ + +L F
Sbjct: 179 VAPQD---AVPFLKALPIEKFHGVGKRTVPRMHEL-GIYTGKDLYECTEMMLIRNFGKMG 234
Query: 183 ADFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKE 240
+ V G+ + R RKS+ E T+ + ++A+L +L ++AE + +++
Sbjct: 235 YSLYRKVR-GIHDSPVNVTRERKSVGKEHTYGQPLQTEEAVL-TQLRQLAEKVEEALRRV 292
Query: 241 GLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRV 298
G+T+ LK++ + T+ VTL +YI E + AS++ + L V +RL+G+ +
Sbjct: 293 QKHGKTVVLKVRYTDYSTVTKRVTLPEYIYKKEALFYQASLIWEEILGVEKGIRLLGITL 352
Query: 299 TQFN 302
T +
Sbjct: 353 TNLD 356
>gi|83655177|gb|ABC39240.1| DNA polymerase IV [Burkholderia thailandensis E264]
Length = 496
Score = 146 bits (369), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 112/308 (36%), Positives = 167/308 (54%), Gaps = 27/308 (8%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFGV +AM +A + CP+L+ +P+ KY S L ++ Y P+ SLDEAYL
Sbjct: 173 ARRFGVHSAMSSALAMRKCPDLLILPSAMDKYRAASRLIMAIYRDYTPDVEPLSLDEAYL 232
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-P 126
D++ R G SG IA E+R V + G+T SAGVAPN+ +AK+ SD NKP+G FV+ P
Sbjct: 233 DVSRATRCHG-SGTLIAREIRERVRDTVGVTVSAGVAPNKFIAKIASDWNKPDGLFVVRP 291
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADF- 185
++ V F+++LP+RK+ G+GKVT L D GI TC E L+ SL H F
Sbjct: 292 HE---VDAFVAALPVRKLHGVGKVTAARL-DKLGIRTCSE-LRGWSLF--DLHHEFGAFG 344
Query: 186 --FLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEI---AEMLSADMQKE 240
+ G+ + RKS+S E T+ +D A L + AEI +L A +++
Sbjct: 345 RRLYELARGIDERPVRADQERKSVSVETTY--VQDLATLDQCAAEIRRLTALLDARIERA 402
Query: 241 GLRG--RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGL 296
G R L +K++ A F+ T + ++ + D S+L K A ++RL+G+
Sbjct: 403 GAARSIRKLYVKIRFADFQ-----RTTVECVADATDAETAVSLLAKGLARRKQAVRLLGV 457
Query: 297 RVTQFNED 304
V + +ED
Sbjct: 458 GV-RIDED 464
>gi|300727423|ref|ZP_07060832.1| DNA polymerase IV [Prevotella bryantii B14]
gi|299775303|gb|EFI71902.1| DNA polymerase IV [Prevotella bryantii B14]
Length = 363
Score = 146 bits (369), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 101/311 (32%), Positives = 163/311 (52%), Gaps = 24/311 (7%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++GV +AM +A++LCP LI + + Y S ++F Y S+DEA+L
Sbjct: 49 ARKYGVHSAMSIQMAKRLCPNLIIAASHHSYYAKISHQIHEIFQDYTDKIEPISIDEAFL 108
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T V ++ ++IA+E++ ++E LT SAG++ N+ LAK+ SD KP+G FV+
Sbjct: 109 DVT-VNKKGSDLAVDIAKEIKQRIFETVHLTASAGISYNKFLAKIASDYRKPDGLFVIHP 167
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
D+ + FI+ LPI K G+G T + V N + + L +F S F+
Sbjct: 168 DK--ALDFIAQLPIEKFWGVGPKTALRMHHVGIFNGLQLRQCSVNHLKELFGKSGPVFY- 224
Query: 188 SVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL-------LYRKLAEIAEMLSADMQKE 240
+ G+ RKS+ E+TF ED ++ LY + E+ E L +K+
Sbjct: 225 NFARGIDERPVISEHVRKSVGCEQTF--LEDISIRSSVIIALYHIVLELVERL----KKD 278
Query: 241 GLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK-----AELPVSLRLIG 295
RG+TLTLK+K F +++++T QKY+ + IL A LL A P+ RL+G
Sbjct: 279 DFRGKTLTLKIKYGDFTQKSKSITQQKYLREKDTILPLAKQLLTQFRFDANHPI--RLMG 336
Query: 296 LRVTQFNEDKV 306
L V+ +E+ +
Sbjct: 337 LSVSNPHEEVI 347
>gi|257888438|ref|ZP_05668091.1| DNA directed DNA polymerase [Enterococcus faecium 1,141,733]
gi|257899185|ref|ZP_05678838.1| DNA directed DNA polymerase [Enterococcus faecium Com15]
gi|431049963|ref|ZP_19493323.1| DNA polymerase IV [Enterococcus faecium E1590]
gi|431065032|ref|ZP_19493855.1| DNA polymerase IV [Enterococcus faecium E1604]
gi|431594896|ref|ZP_19522002.1| DNA polymerase IV [Enterococcus faecium E1861]
gi|431738337|ref|ZP_19527282.1| DNA polymerase IV [Enterococcus faecium E1972]
gi|257824492|gb|EEV51424.1| DNA directed DNA polymerase [Enterococcus faecium 1,141,733]
gi|257837097|gb|EEV62171.1| DNA directed DNA polymerase [Enterococcus faecium Com15]
gi|430560372|gb|ELA99669.1| DNA polymerase IV [Enterococcus faecium E1590]
gi|430568652|gb|ELB07691.1| DNA polymerase IV [Enterococcus faecium E1604]
gi|430590822|gb|ELB28868.1| DNA polymerase IV [Enterococcus faecium E1861]
gi|430597775|gb|ELB35558.1| DNA polymerase IV [Enterococcus faecium E1972]
Length = 373
Score = 146 bits (369), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 101/304 (33%), Positives = 163/304 (53%), Gaps = 19/304 (6%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG+ +AM A +LCP+ IF P D KY+ S R+VF Y S+DEAYL
Sbjct: 63 ARKFGIHSAMSAQKAYELCPQAIFKPGDHHKYSEISKQVREVFYHYTDIVEPVSIDEAYL 122
Query: 68 DITEV---CRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QF 123
D+TE C+ S I+IA ++ ++E LTCSAGV+ N+ LAK+ SD KP G
Sbjct: 123 DVTENKINCK----SAIKIARMIQADIWERVQLTCSAGVSYNKFLAKLASDYQKPRGITV 178
Query: 124 VLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHST 182
V P D + F+ +LPI K G+GK T + ++ GI T +++ + +L F
Sbjct: 179 VAPQD---AVPFLKALPIEKFHGVGKKTVPRMHEL-GIYTGKDLYECTEMMLIRNFGKMG 234
Query: 183 ADFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKE 240
+ V G+ + R RKS+ E T+ + ++A+L +L ++AE + +++
Sbjct: 235 YSLYRKVR-GIHDSPVNVTRERKSVGKEHTYGQPLQTEEAVL-AQLRQLAEKVEEALRRV 292
Query: 241 GLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRV 298
G+T+ LK++ + T+ VTL +YI E + AS++ + L V +RL+G+ +
Sbjct: 293 QKHGKTVVLKVRYTDYSTVTKRVTLPEYIYKKEALFYQASLIWEEILGVEKGIRLLGITL 352
Query: 299 TQFN 302
T +
Sbjct: 353 TNLD 356
>gi|222151871|ref|YP_002561031.1| DNA polymerase IV [Macrococcus caseolyticus JCSC5402]
gi|222121000|dbj|BAH18335.1| DNA-damage-inducible protein P homolog [Macrococcus caseolyticus
JCSC5402]
Length = 354
Score = 146 bits (369), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 103/296 (34%), Positives = 156/296 (52%), Gaps = 11/296 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGV +AMP A +LCP+ +V F Y S VF Y SLDEAYL
Sbjct: 48 ARKFGVHSAMPTSRAYQLCPDGHYVSPRFDVYRSVSQQIMNVFKSYTDIVQPLSLDEAYL 107
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
DIT + R + +IA ++ VYE LTCSAGV+ N+ LAK+ S +NKPNG V+
Sbjct: 108 DITHLVRP-DLGASQIAASIKHDVYETTHLTCSAGVSYNKFLAKIASGMNKPNGLTVIHY 166
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFF 186
+ V + +LPI + G+GKVTE + I T +++ Q + L F + +
Sbjct: 167 NN--VQQILDALPIGEFPGVGKVTEQKMHK-LKIATGKDLRQLSEIELIEQFGKKGSSLY 223
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFSVTE-DKALLYRKLAEIAEMLSADMQKEGLRGR 245
+ G+G+ R RKSI E TF+ + D++ + R + E E ++A +Q
Sbjct: 224 -NKARGIGTDIIEVERERKSIGKETTFAHDKNDESYILRVMNEQTEKVAAKLQSMNKVAD 282
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV---SLRLIGLRV 298
T+T+K+KT+ FE T+ L + ++ I A VLL +L + +RL+G++V
Sbjct: 283 TITVKIKTSDFESHTKQTKLLDFTDQADKIYATA-VLLYTDLKLENEEIRLVGVQV 337
>gi|424762996|ref|ZP_18190475.1| putative DNA polymerase IV [Enterococcus faecium TX1337RF]
gi|431763831|ref|ZP_19552379.1| DNA polymerase IV [Enterococcus faecium E3548]
gi|402423596|gb|EJV55806.1| putative DNA polymerase IV [Enterococcus faecium TX1337RF]
gi|430621655|gb|ELB58407.1| DNA polymerase IV [Enterococcus faecium E3548]
Length = 373
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 101/304 (33%), Positives = 163/304 (53%), Gaps = 19/304 (6%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG+ +AM A +LCP+ IF P D KY+ S R+VF Y S+DEAYL
Sbjct: 63 ARKFGIHSAMSAQKAYELCPQAIFKPGDHHKYSEISKQVREVFYHYTDIVEPVSIDEAYL 122
Query: 68 DITEV---CRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QF 123
D+TE C+ S I+IA ++ ++E LTCSAGV+ N+ LAK+ SD KP G
Sbjct: 123 DVTENKINCK----SAIKIARMIQADIWERVQLTCSAGVSYNKFLAKLASDYQKPRGITV 178
Query: 124 VLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHST 182
V P D + F+ +LPI K G+GK T + ++ GI T +++ + +L F
Sbjct: 179 VAPQD---AVPFLKTLPIEKFHGVGKKTVPRMHEL-GIYTGKDLYECTEMMLIRNFGKMG 234
Query: 183 ADFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKE 240
+ V G+ + R RKS+ E T+ + ++A+L +L ++AE + +++
Sbjct: 235 YSLYRKVR-GIHDSPVNVTRERKSVGKEHTYGQPLQTEEAVL-AQLRQLAEKVEEALRRV 292
Query: 241 GLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRV 298
G+T+ LK++ + T+ VTL +YI E + AS++ + L V +RL+G+ +
Sbjct: 293 QKHGKTVVLKVRYTDYSTVTKRVTLPEYIYKKEALFYQASLIWEEILGVEKGIRLLGITL 352
Query: 299 TQFN 302
T +
Sbjct: 353 TNLD 356
>gi|357050984|ref|ZP_09112180.1| hypothetical protein HMPREF9478_02163 [Enterococcus saccharolyticus
30_1]
gi|355380609|gb|EHG27745.1| hypothetical protein HMPREF9478_02163 [Enterococcus saccharolyticus
30_1]
Length = 371
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 97/302 (32%), Positives = 160/302 (52%), Gaps = 15/302 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++G+ +AM A +LCP +F+P + KY S R++F +Y S+DEAYL
Sbjct: 63 ARQYGIHSAMSAQKAFELCPHAVFIPGNHQKYREISQQVREIFGRYTDVIEPVSIDEAYL 122
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLP 126
D+T V + S I+IA ++ +++ LTCSAGV+ N+ LAK+ SD +KP G V+P
Sbjct: 123 DVT-VNKINCPSAIKIARMIQQDIWQTTQLTCSAGVSYNKFLAKLSSDFHKPRGLTVVMP 181
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADF 185
D + F+ LPI K GIGK T + ++ GI ++ + + L F
Sbjct: 182 ED---AVVFLKKLPIDKFHGIGKKTVPRMHEL-GIYKGSDLYEWSEMALIQEFGKMGYSL 237
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFS---VTEDKALLYRKLAEIAEMLSADMQKEGL 242
+ V G+ + R RKS+ E T+ TED+ + +L +AE + +++
Sbjct: 238 YRKVR-GIHDSPVSVTRERKSVGKEHTYGNALTTEDQVI--SQLRNLAEEVERSLKRTQK 294
Query: 243 RGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQ 300
G+T+ LK++ A + T+ VTL +Y+ E I AS++ + L + +RL+G+ VT
Sbjct: 295 HGKTVVLKVRYADYSTITKRVTLPEYMHKKEAIFSQASLIWEEILGIEKGIRLLGITVTN 354
Query: 301 FN 302
+
Sbjct: 355 LD 356
>gi|281424755|ref|ZP_06255668.1| DNA-directed DNA polymerase [Prevotella oris F0302]
gi|281401125|gb|EFB31956.1| DNA-directed DNA polymerase [Prevotella oris F0302]
Length = 366
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 110/312 (35%), Positives = 170/312 (54%), Gaps = 19/312 (6%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR+AM +A++LC ELI V ++ Y S +F Y SLDEA+L
Sbjct: 47 ARKFGVRSAMSMQLAKRLCRELIVVEGNYQHYREVSGQLHGIFHDYTDIIEPLSLDEAFL 106
Query: 68 DITEVCRERGIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP 126
D+T ++GIS ++IA+E++ + +E GLT SAG++ N+LLAK+ SD KP+G +
Sbjct: 107 DVT--INKKGISLAVDIAKEIKQRIKDELGLTASAGISYNKLLAKIASDYRKPDGLCTIH 164
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL--LCAVFSHSTAD 184
D+ M F++ LP+ + G+G T + + N + L+ SL L VF S
Sbjct: 165 PDK--AMNFVAKLPVEDLWGVGPKTARRMHRMGIFNALQ--LRACSLEHLKMVFGKSGPA 220
Query: 185 FFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEM---LSADMQKEG 241
F+ + G+ R RKS+ E+TF ED +L L E+ + L+ ++K
Sbjct: 221 FY-NYARGIDERPVVVERTRKSVGCEQTF--LEDISLPSALLIELYHLVLELTTRIEKGN 277
Query: 242 LRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL---KAELPVSLRLIGLRV 298
G+TLTLK+K A F+ TR++T +K + + +DIL A LL + ++RL+GL V
Sbjct: 278 FEGKTLTLKIKYADFKQITRSITGRKLLKTKDDILPLAKRLLHLVHYDNAHAIRLMGLSV 337
Query: 299 TQ-FNEDKVRAP 309
+ ED AP
Sbjct: 338 SNPSGEDGDAAP 349
>gi|269966224|ref|ZP_06180313.1| DNA polymerase IV [Vibrio alginolyticus 40B]
gi|269829139|gb|EEZ83384.1| DNA polymerase IV [Vibrio alginolyticus 40B]
Length = 373
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 115/315 (36%), Positives = 161/315 (51%), Gaps = 32/315 (10%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++GVR+AM A +LCP L+ VP Y S R +F +Y P SLDEAYL
Sbjct: 40 ARKYGVRSAMSTARALQLCPHLLVVPGRMHVYKQVSQQIRAIFERYTPIIEPLSLDEAYL 99
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T+ RG S IAE +R ++ E GLT SAG+AP + LAKV SD+NKPNGQFV+P
Sbjct: 100 DVTDSTACRG-SATLIAESIRRDIWSELGLTASAGIAPIKFLAKVASDMNKPNGQFVIPP 158
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFF 186
++ V I SLP+ I G+GKV+ L G CE++ L F A +
Sbjct: 159 EK--VQEVIDSLPLENIPGVGKVSLEKLHQA-GFYRCEDIKNSDYRELLRQFGRQGASLW 215
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFS-----------VTEDKALLYRKLAEIAEMLSA 235
G+ + R RKS+ ERTFS V E+K LY +L + E S
Sbjct: 216 -QRSHGIDNREVVVERERKSVGVERTFSQNIATYGECWQVIEEK--LYPELEKRLERASP 272
Query: 236 D--MQKEGLRGRTLTLKLKTASFEVRT-RAVTLQKYISSSEDILKHASVLLKAELPVSLR 292
D + K+G +K+K A F++ T + Q + + +L+ +LK + +R
Sbjct: 273 DKSIIKQG-------IKVKFADFQLTTIEHIHPQLELEDFKILLRD---ILKRQNGREIR 322
Query: 293 LIGLRVTQFNEDKVR 307
L+GL V ED+ R
Sbjct: 323 LLGLNVMLKPEDQAR 337
>gi|422019443|ref|ZP_16365991.1| DNA polymerase IV [Providencia alcalifaciens Dmel2]
gi|414103282|gb|EKT64860.1| DNA polymerase IV [Providencia alcalifaciens Dmel2]
Length = 351
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 85/208 (40%), Positives = 120/208 (57%), Gaps = 6/208 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARR+GV +AM +A KLCP L VP Y S+ R++F +Y SLDEAYL
Sbjct: 48 ARRYGVHSAMSTALALKLCPHLKVVPGRMAVYKDVSNHIRQIFARYTDLIEPLSLDEAYL 107
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T+ C++ S IAE +R +++E LT SAG+AP + LAK+ SD+NKPNGQFV+
Sbjct: 108 DVTD-CQQLHGSATLIAEAIRQQIFDELQLTASAGIAPIKFLAKIASDMNKPNGQFVITP 166
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHST-ADFF 186
+ TF++SLP++KI G+GKVT L D+ G+ TC ++ QK +L + S
Sbjct: 167 QELP--TFVASLPLKKIPGVGKVTAQKLADM-GLLTCSDV-QKYDMLALIKSMGKFGQAL 222
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFS 214
G+ R RKS+ ERT +
Sbjct: 223 WERCHGIDERAVNPERLRKSVGVERTLA 250
>gi|238764545|ref|ZP_04625492.1| DNA polymerase IV [Yersinia kristensenii ATCC 33638]
gi|238697247|gb|EEP90017.1| DNA polymerase IV [Yersinia kristensenii ATCC 33638]
Length = 352
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 85/211 (40%), Positives = 120/211 (56%), Gaps = 12/211 (5%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARR+GVR+AMP +A KLCP+L +P Y S R++F +Y P SLDEAYL
Sbjct: 48 ARRYGVRSAMPTAMALKLCPQLKVIPGRMAAYKEASLHIREIFARYTPLIEPLSLDEAYL 107
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+++ C+ S IA+E+R S+ E LT SAG+AP + LAK+ SD+NKPNGQ+V+
Sbjct: 108 DVSD-CQACSGSATLIAQEIRQSIAMELNLTASAGIAPVKFLAKIASDLNKPNGQYVITP 166
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLL--CAVFSHSTA 183
D+ V+ F+ LP+ KI G+GKVT L++ G+ TC ++ + LL F H
Sbjct: 167 DK--VLPFLHDLPLSKIPGVGKVTAKRLQE-LGLITCSDVQHYPQAELLKRFGKFGH--- 220
Query: 184 DFFLSVGLGLGSTNTPQARFRKSISSERTFS 214
G+ R RKS+ ERT +
Sbjct: 221 -VLWERSHGIDEREVSPDRLRKSVGVERTLA 250
>gi|328957028|ref|YP_004374414.1| DNA polymerase IV [Carnobacterium sp. 17-4]
gi|328673352|gb|AEB29398.1| DNA polymerase IV [Carnobacterium sp. 17-4]
Length = 377
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 101/301 (33%), Positives = 157/301 (52%), Gaps = 13/301 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++GV +AM A +LCP F+ + Y S R +F +Y SLDEAYL
Sbjct: 66 ARKYGVHSAMSAQKAYELCPHGNFISGHYDLYREISAEVRSIFERYTDTIEPLSLDEAYL 125
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T V + S IA+ ++ +++E LT SAGV+ N+ +AK+ SD +KP G V+P
Sbjct: 126 DVT-VNKHNLTSATYIAKLIQRDIWQEVQLTSSAGVSYNKFIAKLASDYHKPAGITVIPP 184
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFF 186
D + F+ LPI K G+GK T + D+ I T E++ QK + L F +
Sbjct: 185 DE--ALDFLRKLPIEKFYGVGKKTVEKMHDL-SIYTGEDLFQKNEMELIQRFGRMGYSLY 241
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFS---VTEDKALLYRKLAEIAEMLSADMQKEGLR 243
V G+ ++ +R RKS+ E T+ TE + L +L IA + +QK
Sbjct: 242 RKV-RGIDNSPVRVSRERKSVGRELTYGKNLTTEQEVL--SELRFIANKVQLSLQKNQKH 298
Query: 244 GRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRVTQF 301
G+T+ LK++ ++FE T+ +TL Y+ + E+I HA L L +RL+G+ VT
Sbjct: 299 GKTVVLKVRYSNFETATKRLTLPNYVKNGEEIFFHAQNLWDEIGVLDRGIRLLGITVTNL 358
Query: 302 N 302
+
Sbjct: 359 D 359
>gi|119472124|ref|ZP_01614355.1| DNA polymerase IV, devoid of proofreading, damage-inducible protein
P [Alteromonadales bacterium TW-7]
gi|119445144|gb|EAW26437.1| DNA polymerase IV, devoid of proofreading, damage-inducible protein
P [Alteromonadales bacterium TW-7]
Length = 333
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 102/262 (38%), Positives = 150/262 (57%), Gaps = 23/262 (8%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FGVR+AM + A++LCP+L+ VP Y S R+VF +Y SLDEAYL
Sbjct: 30 AREFGVRSAMSNYHAKQLCPDLVIVPGRMAVYKEISSQIREVFSRYTHLVEPLSLDEAYL 89
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLP 126
D+T+ +G S IA+++R +Y GLT SAGVAP + +AK+ SD NKPNGQF VLP
Sbjct: 90 DVTDSKACKG-SATLIAQQIRADIYNATGLTASAGVAPVKFIAKIASDENKPNGQFVVLP 148
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFF 186
++ V F+ LP+ KI G+GKVT L ++ G+ T +++ +KG +F
Sbjct: 149 DE---VDPFLEQLPLGKIPGVGKVTLERL-NLKGLYTGKDVREKG---VNWMQQHVGNFG 201
Query: 187 LSV-----GLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEM---LSADMQ 238
+S+ G +GS +T R RKS+S E T+ +K L L +I + L+ +
Sbjct: 202 VSLYQKCAGEYIGSVST--ERIRKSLSVEHTYEY--NKTSLQECLDQIPSLIDELTRRLD 257
Query: 239 KEGLRGRT--LTLKLKTASFEV 258
K+ L+ R L++K+K A+F V
Sbjct: 258 KQQLQNRINKLSVKVKFANFVV 279
>gi|257066126|ref|YP_003152382.1| DNA-directed DNA polymerase [Anaerococcus prevotii DSM 20548]
gi|256798006|gb|ACV28661.1| DNA-directed DNA polymerase [Anaerococcus prevotii DSM 20548]
Length = 345
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 104/312 (33%), Positives = 167/312 (53%), Gaps = 25/312 (8%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFC---KYDPNFMAASLDE 64
AR FG+ +AMP FIA++LCP LI +P D + YY +++VF +Y S+DE
Sbjct: 47 AREFGLHSAMPVFIAKELCPNLILLPVD---HKYYRKKSKEVFSLVKEYAKLMEQVSVDE 103
Query: 65 AYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFV 124
AYL + ++ +A +L+ V + G+ S G++ N+ LAK+ SD KP+G
Sbjct: 104 AYLLVETDSPKK------LARKLQEEVLRKTGIGISIGISYNKFLAKLASDWQKPHGITQ 157
Query: 125 LPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHSTA 183
+ + + F+ ++ + K+ GIGK T L + GI E++L+ L F A
Sbjct: 158 IRKEDLDY--FLPNISVNKVHGIGKKTSERLNKI-GIYKVEDLLKLDYEYLIDNFGKQGA 214
Query: 184 DFFLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGL 242
+ V G+ +R RKSI ERTF+ T D A+L L ++E++ +M + +
Sbjct: 215 -YIYHVIRGVDDRKINPSRVRKSIGKERTFAQNTNDMAILTSYLKNLSELIEDEMDIKNI 273
Query: 243 RGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL----KAELPVSLRLIGLRV 298
+G+T+ LK+K A F+ TR++TLQ+ I ++DI A LL K E+ LRLIG+ +
Sbjct: 274 QGKTVNLKIKDAKFKNHTRSITLQEPIYRAKDIYNEALSLLEDLHKGEM---LRLIGISL 330
Query: 299 TQFNEDKVRAPS 310
+ E K+ S
Sbjct: 331 SNLQERKLNQLS 342
>gi|254447227|ref|ZP_05060694.1| DNA-directed DNA polymerase protein [gamma proteobacterium
HTCC5015]
gi|198263366|gb|EDY87644.1| DNA-directed DNA polymerase protein [gamma proteobacterium
HTCC5015]
Length = 357
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 101/313 (32%), Positives = 157/313 (50%), Gaps = 7/313 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFG+R+AM A + CP ++FVP F Y S+ +F +Y SLDEAYL
Sbjct: 48 ARRFGIRSAMSSARALQRCPHVVFVPPRFEVYRAVSEQIHGIFAQYTDMIEPLSLDEAYL 107
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D++ C G S IAE LR ++ LT SAGV+ N+ LAK+ SD NKP+G V+
Sbjct: 108 DVS-ACDVLGGSATRIAEALRADIFRATQLTASAGVSYNKFLAKMASDQNKPDGLCVIHP 166
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
R F+ LPI G+G TE ++ +GI T ++ +K A +A ++
Sbjct: 167 QRGE--AFVGELPIGDFHGVGPATEKKMQQ-WGIRTGADLRKKSREWLAAHFGKSAGYYY 223
Query: 188 SVGLGLGSTNTPQARFRKSISSERTFSVTEDK-ALLYRKLAEIAEMLSADMQKEGLRGRT 246
+ G+ R RKSI SE TF+ ++ A + L + E + ++K+ RT
Sbjct: 224 DIARGVDERPVRTHRIRKSIGSETTFAQDLNREAAMLAVLEQRLEKVLLQLEKKRWNART 283
Query: 247 LTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS--LRLIGLRVTQFNED 304
LT+K+K A F TR+ +L + + LL++ S +RL+G+ ++ +
Sbjct: 284 LTVKVKYADFTQVTRSKSLDEPSHGVSAFRRQLPELLRSTEARSKPVRLLGVTLSNLSPQ 343
Query: 305 KVRAPSDPTQKTL 317
+ +P+Q L
Sbjct: 344 ADSSEEEPSQYPL 356
>gi|409098882|ref|ZP_11218906.1| DNA-directed DNA polymerase [Pedobacter agri PB92]
Length = 366
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 103/304 (33%), Positives = 174/304 (57%), Gaps = 15/304 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG+++AM A +LCP IFV F Y+ S R++F +Y SLDEAYL
Sbjct: 56 ARQFGIKSAMSCSKAYQLCPTAIFVYPRFDAYSSVSKSIREIFSRYTDIIEPLSLDEAYL 115
Query: 68 DITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVL 125
D+TE + GI S I+IA+ ++ ++ E LT SAGV+ N+ +AKV SD+NKP+G F+
Sbjct: 116 DVTE--DKLGIGSAIDIAKSIKDAIKNELNLTASAGVSINKFVAKVASDMNKPDGLTFIG 173
Query: 126 PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTA 183
P+ + F+ LP+ K G+GKVT ++ I+T ++ L + LL F S
Sbjct: 174 PS---KIKAFMEKLPVEKFFGVGKVTAAKMK-AMQIHTGSDLKNLSESQLLSQ-FGKS-G 227
Query: 184 DFFLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGL 242
F+ + G+ R KS+ +E T + T + ++++ L +I+E ++ ++K L
Sbjct: 228 KFYYKIVRGIDDRPVRANRETKSVGAEDTLAEDTNEDSVMHDLLKQISETVAKRLEKYQL 287
Query: 243 RGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK-AEL-PVSLRLIGLRVTQ 300
+G+T+TLK+K F++ TR+ + I +E+I A LL A + + +RL+G+ +++
Sbjct: 288 KGKTVTLKIKFEDFKLITRSRSFPLAIHKAENIYAEAIKLLNDANIGSLKVRLLGITLSR 347
Query: 301 FNED 304
F ++
Sbjct: 348 FYDE 351
>gi|404370742|ref|ZP_10976062.1| hypothetical protein CSBG_01957 [Clostridium sp. 7_2_43FAA]
gi|226913130|gb|EEH98331.1| hypothetical protein CSBG_01957 [Clostridium sp. 7_2_43FAA]
Length = 348
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 100/302 (33%), Positives = 160/302 (52%), Gaps = 10/302 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++GV +AMP F+A+KLCP I++ T +Y S+ + S+DEAYL
Sbjct: 48 ARKYGVHSAMPIFMAQKLCPHGIYLRTRMFRYKEVSNQVFDILKDVTSIIQPISIDEAYL 107
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
DIT + SG+E A ++ V +E GLT S G++ N+ LAK+ SD NKPNG ++
Sbjct: 108 DITHSNFK---SGMEAARYIKNRVLKEIGLTISVGISYNKFLAKLASDWNKPNGIKIITK 164
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHSTADFF 186
+ + + P+ +I G+GK + L ++ GI T +++ + S + +
Sbjct: 165 E--MIPHILLPFPVSRIHGVGKKSVEKLNNI-GIFTVKDLYEMPKSFYIEYLGKYGLEIY 221
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTF-SVTEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
+ G+ + R RKS ERT S T DK L L + + +S + + L G+
Sbjct: 222 DRIR-GIDNREVEVERDRKSYGKERTLKSDTHDKEELMLYLKDFSNEISGYLIRGNLEGK 280
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELPVSLRLIGLRVTQFNED 304
T+T+K KT+ F+ TR+ TL Y ++ EDI + +L E+ +RLIG+ V+ F E+
Sbjct: 281 TITVKYKTSDFQNHTRSKTLNYYTNNFEDIYRTCEEILDNEEINEEVRLIGVTVSSFKEN 340
Query: 305 KV 306
KV
Sbjct: 341 KV 342
>gi|16804014|ref|NP_465499.1| DNA polymerase IV [Listeria monocytogenes EGD-e]
gi|386050951|ref|YP_005968942.1| DNA polymerase IV [Listeria monocytogenes FSL R2-561]
gi|404284471|ref|YP_006685368.1| DNA-damage-inducible DNA polymerase IV [Listeria monocytogenes
SLCC2372]
gi|405759025|ref|YP_006688301.1| DNA-damage-inducible DNA polymerase IV [Listeria monocytogenes
SLCC2479]
gi|22095619|sp|Q8Y5T0.1|DPO4_LISMO RecName: Full=DNA polymerase IV; Short=Pol IV
gi|16411428|emb|CAD00053.1| lmo1975 [Listeria monocytogenes EGD-e]
gi|346424797|gb|AEO26322.1| DNA polymerase IV [Listeria monocytogenes FSL R2-561]
gi|404233973|emb|CBY55376.1| DNA-damage-inducible DNA polymerase IV [Listeria monocytogenes
SLCC2372]
gi|404236907|emb|CBY58309.1| DNA-damage-inducible DNA polymerase IV [Listeria monocytogenes
SLCC2479]
Length = 356
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 105/301 (34%), Positives = 159/301 (52%), Gaps = 15/301 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGV +AMP A KLCP IF+ + Y S+ R++F +Y SLDEAYL
Sbjct: 51 ARKFGVHSAMPTRQAAKLCPNGIFIHGNMAHYVEVSNQIREIFSRYTDIIEPLSLDEAYL 110
Query: 68 DITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVL 125
D+TE ++G+ S +A E++ ++Y+E GLT SAGV+ N+ +AK+ SD KP G V
Sbjct: 111 DVTE--NKKGMKSATMVAREIQQTIYQELGLTASAGVSFNKFIAKIASDFKKPAGITVVT 168
Query: 126 PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTA 183
P + A F+ +P+ K G+GKVT L + GI T ++ + L+ + H
Sbjct: 169 PEEAEA---FLEQIPVTKFYGVGKVTAEKLHRL-GIETGADLKKWSEWDLIRELHKHGYH 224
Query: 184 DFFLSVGLGLGSTNTPQARFRKSISSERTFSVTE-DKALLYRKLAEIAEMLSADMQKEGL 242
+ G N P R RKS+ E TF D +L + L + A+ + + K
Sbjct: 225 LYRHVRGRSNNIVN-PH-RDRKSVGKETTFEFNVLDSRVLEQSLMQFAKKVEERLIKLQK 282
Query: 243 RGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQ 300
G+T+ LKL+ + F T+ +TL +Y + + I + A++LL S+RLIGL VT
Sbjct: 283 HGKTVVLKLRYSDFTTITKRLTLNEYTNDASQIYQAAALLLIESYTGQDSIRLIGLTVTN 342
Query: 301 F 301
Sbjct: 343 L 343
>gi|407771198|ref|ZP_11118559.1| DNA polymerase IV [Thalassospira xiamenensis M-5 = DSM 17429]
gi|407285768|gb|EKF11263.1| DNA polymerase IV [Thalassospira xiamenensis M-5 = DSM 17429]
Length = 456
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 111/310 (35%), Positives = 164/310 (52%), Gaps = 13/310 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR+AMP F AR+LCP+ +F+ D KY R + P+ S+DEA+L
Sbjct: 93 ARKFGVRSAMPAFKARELCPDGVFLKPDMAKYQREGYRVRDMMRAITPDIEPLSIDEAFL 152
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T + E +L+ + E G+T S G++ N+ LAK+ SD+NKP G F +
Sbjct: 153 DLTNAQGTHCKTAAECLIDLQAEIRREVGITVSIGLSYNKFLAKIASDLNKPFG-FSMIG 211
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
AV +F++ P+R + G+G E LRD GI T +M Q S F
Sbjct: 212 SAEAV-SFLADKPVRMMWGVGPAMERKLRDD-GITTIGQMQQLDIHALQGRYGSIGKRFF 269
Query: 188 SVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSA----DMQKEGLR 243
G + Q+ RKS+SSE TF+ ED + L +L +IA+ L+A D+ ++ +
Sbjct: 270 YFSRGQDNRRVEQSSERKSLSSETTFN--EDISDL-DELVDIAKRLTARVASDLARKEIA 326
Query: 244 GRTLTLKLKTASFEVRTRAVTLQKYISSSED-ILKHASVLLKAEL-PVSLRLIGLRVTQF 301
G T+ LKLK+A F+ RTR + L Y + ED IL+ A LLK E+ RL+G+ V
Sbjct: 327 GHTVVLKLKSADFKTRTRNMRLT-YPTLREDLILETALTLLKKEVDGTRYRLLGVGVADL 385
Query: 302 NEDKVRAPSD 311
+ P+D
Sbjct: 386 FPAETADPAD 395
>gi|429740249|ref|ZP_19273948.1| putative DNA polymerase IV [Prevotella saccharolytica F0055]
gi|429153802|gb|EKX96570.1| putative DNA polymerase IV [Prevotella saccharolytica F0055]
Length = 363
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 110/307 (35%), Positives = 157/307 (51%), Gaps = 21/307 (6%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFG+ +AMP A+K+CPELI VP DF KY S +F Y SLDEA+L
Sbjct: 53 ARRFGIHSAMPVTRAKKMCPELIIVPPDFAKYKAVSSQVHAIFHDYTDIIEPLSLDEAFL 112
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T+ ++ ++IA+++R + E LT SAGV+ N+ LAKV SD KP+G V+
Sbjct: 113 DVTQNKLNIPLA-VDIAKQIRQRIRNELHLTASAGVSYNKFLAKVASDYRKPDGLTVIHP 171
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDV---FGINTCEEMLQKGSLLCAVFSHSTAD 184
DR FIS+L I G+G T H + + G + LQ+ L F A
Sbjct: 172 DR--AKDFISNLRIEDFWGVGGKTAHTMHRMGIFIGYDLRRYSLQR---LMQEFGKMGAV 226
Query: 185 FFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEM---LSADMQKEG 241
++ + G+ RKS+ E+TF ED + + + E+ + L ++K
Sbjct: 227 YY-NFARGIDLRPVEAFSVRKSVGCEQTF--MEDTDIPSKLIIELYHLVLELVERIKKAK 283
Query: 242 LRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK----AELPVSLRLIGLR 297
+GRTLTLK+K F TR++T EDIL A LLK PV RL+GL
Sbjct: 284 FKGRTLTLKVKFHDFTQITRSITRSSDFCLKEDILPAAKALLKEVEYTNHPV--RLLGLS 341
Query: 298 VTQFNED 304
V+ +E+
Sbjct: 342 VSHPHEE 348
>gi|423081977|ref|ZP_17070572.1| putative DNA polymerase IV [Clostridium difficile 002-P50-2011]
gi|423085581|ref|ZP_17074023.1| putative DNA polymerase IV [Clostridium difficile 050-P50-2011]
gi|357549227|gb|EHJ31074.1| putative DNA polymerase IV [Clostridium difficile 002-P50-2011]
gi|357549498|gb|EHJ31344.1| putative DNA polymerase IV [Clostridium difficile 050-P50-2011]
Length = 366
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 102/309 (33%), Positives = 163/309 (52%), Gaps = 22/309 (7%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG+ +AMP +A CP +FV F Y S+ R +F +Y SLDEAYL
Sbjct: 52 ARKFGIHSAMPSAVAYNRCPYAVFVRPRFDVYKSVSEQIRDIFYRYTDLVEPLSLDEAYL 111
Query: 68 DITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP 126
D+T+ ++ I S IEIA++++ ++ E GLT SAGV+ N+ LAK+ SD+ KPNG V+
Sbjct: 112 DVTK--NKKSIDSSIEIAKQIKKDIFREVGLTSSAGVSYNKFLAKIASDLRKPNGLTVIT 169
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINT-----CEEMLQKGSLLCAVFSHS 181
+ F+ LP+ K G+GKVT + L+++ GI T C + + L +F
Sbjct: 170 EEN--AQDFLDKLPVNKFFGVGKVTSNTLKNL-GIKTGYDLRCLNLFE----LENIFKKR 222
Query: 182 TADFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQK 239
+ + G+ R RKS+ +E T S + D+ L E+ E + ++
Sbjct: 223 GYELY-KFARGIDDRPVEPNRVRKSVGAETTLSHNLDIDEEETRNILDELCEEVCHRLKS 281
Query: 240 EGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS---LRLIGL 296
G+TLTLK+K F TR+++L+ YI DI LL+ + V+ +RL+G+
Sbjct: 282 SEKFGKTLTLKIKYEDFTKITRSISLEHYIDEYNDIRSGVDNLLR-NVEVNGKQIRLLGV 340
Query: 297 RVTQFNEDK 305
++ ++ K
Sbjct: 341 TISNLSDKK 349
>gi|330840359|ref|XP_003292184.1| hypothetical protein DICPUDRAFT_95543 [Dictyostelium purpureum]
gi|325077572|gb|EGC31275.1| hypothetical protein DICPUDRAFT_95543 [Dictyostelium purpureum]
Length = 489
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 69/187 (36%), Positives = 115/187 (61%), Gaps = 4/187 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++GVR+ +PG +A KLCP+L+ +P+ +Y S + R +F KYDPN+++ SLDE +
Sbjct: 123 ARKYGVRSGLPGLLAMKLCPQLVILPSRMDRYREVSSVIRNIFSKYDPNYVSPSLDEGCI 182
Query: 68 DITEVCR-ERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP 126
DIT+ + G++ +++A L++ +Y E LT S G++ + LL+K+CS+INKPNG F L
Sbjct: 183 DITDYLKNNEGLTPVDVANSLQSDIYNETTLTSSMGISCSPLLSKICSEINKPNGFFFLE 242
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFF 186
N FI ++ I+K+ GIGKV + +L+ G+ T ++++ L +F D
Sbjct: 243 NKH--TQEFIKTIQIKKLPGIGKVRQELLK-TLGLVTVGDVIEHRYELYFIFPEQHRDLL 299
Query: 187 LSVGLGL 193
L +
Sbjct: 300 FKHALAV 306
>gi|430826869|ref|ZP_19445038.1| DNA polymerase IV [Enterococcus faecium E0164]
gi|430444618|gb|ELA54453.1| DNA polymerase IV [Enterococcus faecium E0164]
Length = 372
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 101/304 (33%), Positives = 164/304 (53%), Gaps = 19/304 (6%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG+ +AM A +LCP+ IF P D KY+ S R+VF +Y S+DEAYL
Sbjct: 62 ARKFGIHSAMSAQKAYELCPQAIFKPGDHHKYSDISRQVREVFYRYTDIVEPVSIDEAYL 121
Query: 68 DITEV---CRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QF 123
D+TE C+ S I+IA ++ ++E LTCSAGV+ N+ LAK+ SD KP G
Sbjct: 122 DVTENKINCK----SAIKIARMIQADIWESVQLTCSAGVSYNKFLAKLASDYQKPRGITV 177
Query: 124 VLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHST 182
V P D + F+ +LPI K G+GK T + ++ GI T +++ + +L F
Sbjct: 178 VAPQD---AVPFLKALPIEKFHGVGKRTVPRMHEL-GIYTGKDLYECTEMILIRNFGKMG 233
Query: 183 ADFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKE 240
+ V G+ + R RKS+ E T+ + ++A+L +L ++AE + +++
Sbjct: 234 YSLYRKVR-GIHDSPVNVTRERKSVGKEHTYGQPLQTEEAVL-TQLRQLAEKVEEALRRV 291
Query: 241 GLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRV 298
G+T+ LK++ + T+ VTL +YI E + AS++ + L V +RL+G+ +
Sbjct: 292 QKHGKTVVLKVRYTDYSTVTKRVTLPEYIYKKEALFYQASLIWEEILGVEKGIRLLGITL 351
Query: 299 TQFN 302
T +
Sbjct: 352 TNLD 355
>gi|406590293|ref|ZP_11064662.1| DNA polymerase IV [Enterococcus sp. GMD1E]
gi|404469362|gb|EKA14168.1| DNA polymerase IV [Enterococcus sp. GMD1E]
Length = 372
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 100/304 (32%), Positives = 164/304 (53%), Gaps = 19/304 (6%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG+ +AM A ++CP+ IF P D KY+ S R+VF +Y S+DEAYL
Sbjct: 62 ARKFGIHSAMSAQKAYEICPQAIFKPGDHHKYSDISKQVREVFYRYTDIVEPVSIDEAYL 121
Query: 68 DITEV---CRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QF 123
D+TE C+ S I+IA ++ ++E LTCSAGV+ N+ LAK+ SD KP G
Sbjct: 122 DVTENKINCK----SAIKIARMIQADIWESVQLTCSAGVSYNKFLAKLASDYQKPRGITV 177
Query: 124 VLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHST 182
V P D + F+ +LPI K G+GK T + ++ GI T +++ + +L F
Sbjct: 178 VAPQD---AVPFLKALPIEKFHGVGKKTVPRMHEL-GIYTGKDLYECTEMMLIRNFGKMG 233
Query: 183 ADFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKE 240
+ V G+ + R RKS+ E T+ + ++A+L +L ++AE + +++
Sbjct: 234 YSLYRKVR-GIHDSPVNVTRERKSVGKEHTYGQPLQTEEAVL-TQLRQLAEKVEEALRRV 291
Query: 241 GLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRV 298
G+T+ LK++ + T+ VTL +YI E + AS++ + L V +RL+G+ +
Sbjct: 292 QKHGKTVVLKVRYTDYSTVTKRVTLPEYIYKKEALFYQASLIWEEILGVEKGIRLLGITL 351
Query: 299 TQFN 302
T +
Sbjct: 352 TNLD 355
>gi|314934060|ref|ZP_07841423.1| DNA polymerase IV [Staphylococcus caprae C87]
gi|313653171|gb|EFS16930.1| DNA polymerase IV [Staphylococcus caprae C87]
Length = 356
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 101/305 (33%), Positives = 158/305 (51%), Gaps = 11/305 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++GV +AMP A KLCP +V + F Y S ++F Y SLDEAYL
Sbjct: 50 ARKYGVHSAMPMSQAHKLCPNGYYVTSRFGAYREVSHQIMEIFRSYTEIVEPMSLDEAYL 109
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
DIT + R + IA +R ++E+ LT SAGV+ N+ LAK+ S +NKPNG V+
Sbjct: 110 DITHLVRP-DMPASRIANYIRRDIFEQTQLTASAGVSYNKFLAKLASGMNKPNGMTVI-- 166
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFF 186
D V + +L I + G+GK ++ ++ D GI T +++ K L +F +
Sbjct: 167 DYQNVHEILMNLDIGEFPGVGKASKKVMHDN-GIFTGQDLYDKDEFELIRLFGKRGRGLY 225
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRG 244
+ G+ + R RKS+ +ERTFS V +D +L RK+ E++ + + K G
Sbjct: 226 -NKARGIDNNEVKATRVRKSVGTERTFSTDVNDDDEIL-RKVWELSGKTAERLNKLQKSG 283
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRVTQFN 302
+T+T+K+KT +E ++ +L+ + S DI A L + V +RLIG+ V
Sbjct: 284 KTVTVKIKTFKYETLSKQTSLRDSVQSENDIYNIAYTLYSDLKDPDVPIRLIGVTVGNLE 343
Query: 303 EDKVR 307
+ R
Sbjct: 344 QSSYR 348
>gi|431099276|ref|ZP_19496442.1| DNA polymerase IV [Enterococcus faecium E1613]
gi|430570777|gb|ELB09716.1| DNA polymerase IV [Enterococcus faecium E1613]
Length = 373
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 104/309 (33%), Positives = 162/309 (52%), Gaps = 29/309 (9%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG+ +AM A +LCP+ IF P D KY+ S R+VF Y S+DEAYL
Sbjct: 63 ARKFGIHSAMSAQKAYELCPKAIFKPGDHHKYSEISKQVREVFYHYTDIVEPVSIDEAYL 122
Query: 68 DITEV---CRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QF 123
D+TE C+ S I+IA ++ ++E LTCSAGV+ N+ LAK+ SD KP G
Sbjct: 123 DVTENKINCK----SAIKIARMIQADIWERVQLTCSAGVSYNKFLAKLASDYQKPRGITV 178
Query: 124 VLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINT------CEEMLQKGSLLCAV 177
V P D + F+ +LPI K G+GK T + ++ GI T C EM+ L
Sbjct: 179 VAPQD---AVPFLKALPIEKFHGVGKKTVPRMHEL-GIYTGKDLYECTEMM-----LIRN 229
Query: 178 FSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSA 235
F + V G+ + R RKS+ E T+ + ++A+L +L ++AE +
Sbjct: 230 FGKMGYSLYRKVR-GIHDSPVNVTRERKSVGKEHTYGQPLQTEEAVL-AQLRQLAEKVEE 287
Query: 236 DMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRL 293
+++ G+T+ LK++ + T+ VTL +YI E + AS++ + L V +RL
Sbjct: 288 ALRRVQKHGKTVVLKVRYTDYSTVTKRVTLPEYIYKKEALFYQASLIWEEILGVEKGIRL 347
Query: 294 IGLRVTQFN 302
+G+ +T +
Sbjct: 348 LGITLTNLD 356
>gi|160900719|ref|YP_001566301.1| DNA-directed DNA polymerase [Delftia acidovorans SPH-1]
gi|160366303|gb|ABX37916.1| DNA-directed DNA polymerase [Delftia acidovorans SPH-1]
Length = 437
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 102/299 (34%), Positives = 156/299 (52%), Gaps = 13/299 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGV +AM A +LCP+ I +P DF + +S + +++ P +DE Y+
Sbjct: 103 ARQFGVGSAMGMMKAARLCPQAILLPVDFAEVRRFSRMFKEIIVSIAPLMEDRGVDEVYI 162
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLP 126
D T+V + G +A ++ ++ + GLTCS GVAPN+LLAK+ S+ NKPNG V P
Sbjct: 163 DFTDVPGGQREGGRVLARLIQKTITDATGLTCSIGVAPNKLLAKMASEFNKPNGISIVQP 222
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL--LCAVFSHSTAD 184
+D AV I L RKI GIG + L+ + GI T E L K SL L F + +
Sbjct: 223 DDLQAV---IWPLACRKINGIGPKADAKLQSL-GIQTIGE-LAKQSLPQLVQWFGRAYGN 277
Query: 185 FFLSVGLGLGS----TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKE 240
+ V G T++ + + ER D+A L ++ E L+ D+Q++
Sbjct: 278 WLHGVSWGRDERPVVTHSEPVSMSRETTFERDLHAVRDRAELSAIFTDLCERLAQDLQRK 337
Query: 241 GLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK-AELPVSLRLIGLRV 298
G GRT+ +KL+ F+ TR TL+ ++ + + + A LK L LRL+G+RV
Sbjct: 338 GYMGRTVGIKLRYDDFKTATRDHTLELPMADAATLRRAAGQCLKRVPLAKRLRLLGVRV 396
>gi|451821300|ref|YP_007457501.1| DNA polymerase IV [Clostridium saccharoperbutylacetonicum
N1-4(HMT)]
gi|451787279|gb|AGF58247.1| DNA polymerase IV [Clostridium saccharoperbutylacetonicum
N1-4(HMT)]
Length = 348
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 101/299 (33%), Positives = 160/299 (53%), Gaps = 10/299 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGV +AMP F+A++ CP IFVP + +YT S K+F + P S+DE +L
Sbjct: 48 ARKFGVHSAMPIFMAKEKCPNGIFVPGRYGRYTKVSQEIFKIFNEVTPLVEQVSIDEGFL 107
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
DI++ + G+E A ++ V+ E GLT S G++ N+ LAK+ SD NKPNG +
Sbjct: 108 DISQ---GKFNDGMEAARYIKNKVFREVGLTLSIGISYNKFLAKLASDWNKPNGIKEINK 164
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHSTADFF 186
+ + + F LPI KI G+GKV+ L ++ GI +++ F + D +
Sbjct: 165 EMLPDILF--PLPISKIHGLGKVSVAKLNNI-GIYYVKDLYNMPKDFYIDCFGKNGIDIY 221
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
+ G+ + RKS+ E T T +K L L E + + ++++ + G+
Sbjct: 222 NRI-RGIDNRKVETLHERKSVGKETTLKFDTRNKEELAEYLKEFSFEIEEILRRKNVVGK 280
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHAS-VLLKAELPVSLRLIGLRVTQFNE 303
T+TLK KT +FE TR+ TL YI ++ +I A +L EL +RLIG+ ++ F E
Sbjct: 281 TITLKFKTKNFENHTRSKTLNYYIGNNSEIFNVAKELLEDEELNEEVRLIGISISSFKE 339
>gi|77361305|ref|YP_340880.1| DNA polymerase IV [Pseudoalteromonas haloplanktis TAC125]
gi|123588548|sp|Q3II35.1|DPO4_PSEHT RecName: Full=DNA polymerase IV; Short=Pol IV
gi|76876216|emb|CAI87438.1| DNA polymerase IV, devoid of proofreading, damage-inducible protein
P [Pseudoalteromonas haloplanktis TAC125]
Length = 351
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 95/259 (36%), Positives = 147/259 (56%), Gaps = 17/259 (6%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR +GVR+AM + A++LCP+L+ VP Y S R VF +Y SLDEAYL
Sbjct: 47 AREYGVRSAMSNYHAKQLCPDLVIVPGRMAVYKDVSTQIRAVFSRYTDLIEPLSLDEAYL 106
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T + +G S IA+++R +Y GLT SAG+AP + +AK+ SD NKPNGQFV+
Sbjct: 107 DVTHSEQCKG-SATLIAQQIRADIYNATGLTASAGIAPIKFIAKIASDENKPNGQFVVLP 165
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
D+ V F++ LP+ KI G+GKVT L ++ G+ T +++ +KG +F +
Sbjct: 166 DQ--VDAFLAQLPLGKIPGVGKVTLEKL-NLKGLYTGQDVRKKG---VNWMQQHVGNFGV 219
Query: 188 SV-----GLGLGSTNTPQARFRKSISSERTFSVTEDKAL-LYRKLAEIAEMLSADMQKEG 241
S+ G +G +T R RKS+S E T+ ++ +L + E L+ + K+
Sbjct: 220 SLYQKCAGEHIGRVST--ERVRKSLSVEHTYEYNKNSLQECLEQLPSLLEELTTRLNKQQ 277
Query: 242 LRGRT--LTLKLKTASFEV 258
L+ + L++K+K A+F V
Sbjct: 278 LQNQVNKLSVKVKFANFVV 296
>gi|359447912|ref|ZP_09237471.1| DNA polymerase IV [Pseudoalteromonas sp. BSi20480]
gi|358046272|dbj|GAA73720.1| DNA polymerase IV [Pseudoalteromonas sp. BSi20480]
Length = 333
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 102/262 (38%), Positives = 150/262 (57%), Gaps = 23/262 (8%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FGVR+AM + A++LCP+L+ VP Y S R+VF +Y SLDEAYL
Sbjct: 30 AREFGVRSAMSNYHAKQLCPDLVIVPGRMAVYKEISSQIREVFSRYTHLVEPLSLDEAYL 89
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLP 126
D+T+ +G S IA+++R +Y GLT SAGVAP + +AK+ SD NKPNGQF VLP
Sbjct: 90 DVTDSKACKG-SATLIAQQIRADIYNATGLTASAGVAPVKFIAKIASDENKPNGQFVVLP 148
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFF 186
++ V F+ LP+ KI G+GKVT L ++ G+ T +++ +KG +F
Sbjct: 149 DE---VDPFLEQLPLGKIPGVGKVTLERL-NLKGLYTGKDVREKG---VNWMQQHVGNFG 201
Query: 187 LSV-----GLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEM---LSADMQ 238
+S+ G +GS +T R RKS+S E T+ +K L L +I + L+ +
Sbjct: 202 VSLYQKCAGEYIGSVST--ERIRKSLSVEHTYEY--NKTSLQECLDQIPSLIDELTRRLD 257
Query: 239 KEGLRGRT--LTLKLKTASFEV 258
K+ L+ R L++K+K A+F V
Sbjct: 258 KQQLQSRINKLSVKVKFANFVV 279
>gi|121595598|ref|YP_987494.1| DNA-directed DNA polymerase [Acidovorax sp. JS42]
gi|120607678|gb|ABM43418.1| DNA-directed DNA polymerase [Acidovorax sp. JS42]
Length = 399
Score = 145 bits (367), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 99/300 (33%), Positives = 150/300 (50%), Gaps = 13/300 (4%)
Query: 7 SARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAY 66
+AR+FGV +AM A +LCP+ + +P DF Y YS L ++V P +DE Y
Sbjct: 82 AARQFGVGSAMGLMKAARLCPQAVLLPVDFAAYRRYSRLFKEVILSIAPVMEDRGVDEVY 141
Query: 67 LDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVL 125
+D T V + G +A ++ S+++ GLTCS GVAPN+L+AK+ S+ NKPNG V
Sbjct: 142 IDFTRVAGGQRDGGRVLARLIQKSIFDATGLTCSIGVAPNKLIAKMASEFNKPNGISIVQ 201
Query: 126 PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTAD 184
P D + I L RKI G+G E L GI T E+ Q+ L F S
Sbjct: 202 PGD---LQPLIWPLDCRKINGVGPKAEARLL-AHGIRTIGELAQRPLPWLMQQFGRSYGA 257
Query: 185 FFLSVGLGLGS----TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKE 240
+ G T + + + ER D+A L R + E ++ D+ +
Sbjct: 258 WLHDAAWGRDERAVVTESEPVSMSRETTFERDLHAVHDRAELGRIFTALCEQVAGDLIAK 317
Query: 241 GLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS--LRLIGLRV 298
G GRT+ +KL+ F++ TR T+ + + I + A + LK +P++ LRL+G+RV
Sbjct: 318 GYAGRTIGIKLRYDDFKIATRDQTVADFTQDAATIRRVAGLCLK-RVPLTKRLRLLGVRV 376
>gi|334365065|ref|ZP_08514033.1| DNA polymerase IV [Alistipes sp. HGB5]
gi|313158762|gb|EFR58149.1| DNA polymerase IV [Alistipes sp. HGB5]
Length = 358
Score = 145 bits (367), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 101/295 (34%), Positives = 161/295 (54%), Gaps = 13/295 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR +GVR+A+ +A++LCP LIFVP F Y S R VF Y SLDEA+L
Sbjct: 49 ARPYGVRSAISSALAKRLCPNLIFVPARFDVYKEVSRQIRAVFRDYTELVEPLSLDEAFL 108
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T + S A E++ + E GLT SAG++ N++LAK+ SD KP+G F +P
Sbjct: 109 DVTHLR-----SATLAAREIKARILAETGLTASAGISVNKMLAKIASDYRKPDGLFTIPP 163
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM-LQKGSLLCAVFSHSTADFF 186
+ + F+++LPI + GIG+VT + + GI+T ++ L+ + L F + ++
Sbjct: 164 GQ--IEEFVAALPIERFFGIGEVTARKMHGM-GIHTGADLRLRDEAELVRHFGKAGHSYY 220
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
G+ R RKS+ +E TF+ T+D+ L +L+ + E + + + +G+
Sbjct: 221 -GYARGIDEREVTPNRIRKSLGAETTFAEDTDDREQLRLELSAVREEVWNRLMRHEFKGK 279
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAE--LPVSLRLIGLRV 298
T+ LKLK +F TR+ TL ++S+E + + + LL A +RLIGL V
Sbjct: 280 TVVLKLKFDNFRQITRSKTLFAPVNSAETLRQVSEELLAAVDFRGRKIRLIGLTV 334
>gi|19568907|gb|AAL91965.1|AF483102_1 DNA polymerase DinB [Escherichia coli]
Length = 336
Score = 145 bits (367), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 106/302 (35%), Positives = 160/302 (52%), Gaps = 16/302 (5%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR+AMP +A KLCP L +P F Y S+ R++F +Y SLDEAYL
Sbjct: 42 ARKFGVRSAMPTGMALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYL 101
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-P 126
D+T+ G S IA+E+R +++ E LT SAGVAP + LAK+ SD+NKPNGQFV+ P
Sbjct: 102 DVTDSVHCHG-SATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITP 160
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHST-ADF 185
+ V F+ +LP+ KI G+GKV+ L + G+ TC + +QK L+ +
Sbjct: 161 AE---VPAFLQTLPLAKIPGVGKVSAAKL-EAMGLRTCSD-VQKCDLVTLLKRFGKFGRI 215
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFS-----VTEDKALLYRKLAEIAEMLSADMQKE 240
G+ + R RKS+ ERT + +E +A++ R E+ L A ++ +
Sbjct: 216 LWECSQGIDERDVNSERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRL-AKVKPD 274
Query: 241 GLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQ 300
L R +KLK F+ T+ + ++ S+ I + +RL+GL VT
Sbjct: 275 LLIARQ-GVKLKFDDFQQTTQEHVWPR-LNKSDLIATARKTWDERRGGRGVRLVGLHVTL 332
Query: 301 FN 302
+
Sbjct: 333 LD 334
>gi|227550409|ref|ZP_03980458.1| DNA-directed DNA polymerase [Enterococcus faecium TX1330]
gi|293379604|ref|ZP_06625741.1| DNA polymerase IV [Enterococcus faecium PC4.1]
gi|431758358|ref|ZP_19546985.1| DNA polymerase IV [Enterococcus faecium E3083]
gi|227180468|gb|EEI61440.1| DNA-directed DNA polymerase [Enterococcus faecium TX1330]
gi|292641753|gb|EFF59926.1| DNA polymerase IV [Enterococcus faecium PC4.1]
gi|430617416|gb|ELB54289.1| DNA polymerase IV [Enterococcus faecium E3083]
Length = 373
Score = 145 bits (367), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 101/304 (33%), Positives = 163/304 (53%), Gaps = 19/304 (6%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG+ +AM A +LCP+ IF P D KY+ S R+VF Y S+DEAYL
Sbjct: 63 ARKFGIHSAMSAQKAYELCPQAIFKPGDHHKYSEISKQVREVFYHYTDIVEPVSIDEAYL 122
Query: 68 DITEV---CRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QF 123
D+TE C+ S I+IA ++ ++E LTCSAGV+ N+ LAK+ SD KP G
Sbjct: 123 DVTENKINCK----SAIKIARMIQADIWERVQLTCSAGVSYNKFLAKLASDYQKPRGITV 178
Query: 124 VLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHST 182
V P D + F+ +LPI K G+GK T + ++ GI T +++ + + L F
Sbjct: 179 VAPQD---AVPFLKTLPIEKFHGVGKKTVPRMHEL-GIYTGKDLYECTEMTLIRNFGKMG 234
Query: 183 ADFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKE 240
+ V G+ + R RKS+ E T+ + ++A+L +L ++AE + +++
Sbjct: 235 YSLYRKVR-GIHDSPVNVTRERKSVGKEHTYGQPLQTEEAVL-AQLRQLAEKVEEALRRV 292
Query: 241 GLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRV 298
G+T+ LK++ + T+ VTL +YI E + AS++ + L V +RL+G+ +
Sbjct: 293 QKHGKTVVLKVRYTDYSTVTKRVTLPEYIYKKEALFYQASLIWEEILGVEKGIRLLGITL 352
Query: 299 TQFN 302
T +
Sbjct: 353 TNLD 356
>gi|212709381|ref|ZP_03317509.1| hypothetical protein PROVALCAL_00417 [Providencia alcalifaciens DSM
30120]
gi|212688293|gb|EEB47821.1| hypothetical protein PROVALCAL_00417 [Providencia alcalifaciens DSM
30120]
Length = 351
Score = 145 bits (367), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 85/208 (40%), Positives = 119/208 (57%), Gaps = 6/208 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARR+GV +AM +A KLCP L VP Y S R++F +Y SLDEAYL
Sbjct: 48 ARRYGVHSAMSTALALKLCPHLKVVPGRMAVYKEVSHHIRQIFARYTDLIEPLSLDEAYL 107
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T+ C++ S IAE +R +++E LT SAG+AP + LAK+ SD+NKPNGQFV+
Sbjct: 108 DVTD-CQQLHGSATLIAEAIRQQIFDELQLTASAGIAPIKFLAKIASDMNKPNGQFVITP 166
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHST-ADFF 186
+ TF++SLP++KI G+GKVT L D+ G+ TC ++ QK +L + S
Sbjct: 167 QELP--TFVASLPLKKIPGVGKVTAQKLADM-GLLTCSDV-QKYDMLALIKSMGKFGQAL 222
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFS 214
G+ R RKS+ ERT +
Sbjct: 223 WERCHGIDERAVNPERLRKSVGVERTLA 250
>gi|238752553|ref|ZP_04614027.1| DNA polymerase IV [Yersinia rohdei ATCC 43380]
gi|238709228|gb|EEQ01472.1| DNA polymerase IV [Yersinia rohdei ATCC 43380]
Length = 371
Score = 145 bits (367), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 85/211 (40%), Positives = 121/211 (57%), Gaps = 12/211 (5%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARR+GVR+AMP +A KLCP+L +P Y S R++F +Y P SLDEAYL
Sbjct: 67 ARRYGVRSAMPTAMALKLCPQLKVIPGRMAAYKEASLHIREIFARYTPLIEPLSLDEAYL 126
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+++ C+ S IA+E+R S+ E LT SAG+AP + LAK+ SD+NKPNGQ+V+
Sbjct: 127 DVSD-CQVCSGSATLIAQEIRQSIAMELNLTASAGIAPIKFLAKIASDLNKPNGQYVITP 185
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLL--CAVFSHSTA 183
D+ V++F+ LP+ KI G+GKVT L++ G+ TC ++ + LL F H
Sbjct: 186 DK--VLSFLHDLPLSKIPGVGKVTAKRLQE-LGLITCSDVQNFSQAELLKRFGKFGH--- 239
Query: 184 DFFLSVGLGLGSTNTPQARFRKSISSERTFS 214
G+ R RKS+ ERT +
Sbjct: 240 -VLWERSHGIDEREVSPDRLRKSVGVERTLA 269
>gi|390947019|ref|YP_006410779.1| nucleotidyltransferase/DNA polymerase [Alistipes finegoldii DSM
17242]
gi|390423588|gb|AFL78094.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Alistipes finegoldii DSM 17242]
Length = 358
Score = 145 bits (367), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 101/295 (34%), Positives = 161/295 (54%), Gaps = 13/295 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR +GVR+A+ +A++LCP LIFVP F Y S R VF Y SLDEA+L
Sbjct: 49 ARPYGVRSAISSALAKRLCPNLIFVPARFDVYKEVSRQIRAVFRDYTELVEPLSLDEAFL 108
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T + S A E++ + E GLT SAG++ N++LAK+ SD KP+G F +P
Sbjct: 109 DVTHLR-----SATLAAREIKARILAETGLTASAGISVNKMLAKIASDYRKPDGLFTIPP 163
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM-LQKGSLLCAVFSHSTADFF 186
+ + F+++LPI + GIG+VT + + GI+T ++ L+ + L F + ++
Sbjct: 164 GQ--IEEFVAALPIERFFGIGEVTARKMHGM-GIHTGADLRLRDEAELVRHFGKAGHSYY 220
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
G+ R RKS+ +E TF+ T+D+ L +L+ + E + + + +G+
Sbjct: 221 -GYARGIDEREVTPNRIRKSLGAETTFAEDTDDREQLRLELSAVREEVWNRLMRHEFKGK 279
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAE--LPVSLRLIGLRV 298
T+ LKLK +F TR+ TL ++S+E + + + LL A +RLIGL V
Sbjct: 280 TVVLKLKFDNFRQITRSKTLFAPVNSAETLRQVSEELLAAVDFRGRKIRLIGLTV 334
>gi|347537985|ref|YP_004845409.1| DNA polymerase IV [Pseudogulbenkiania sp. NH8B]
gi|345641162|dbj|BAK74995.1| DNA polymerase IV [Pseudogulbenkiania sp. NH8B]
Length = 359
Score = 145 bits (367), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 109/315 (34%), Positives = 161/315 (51%), Gaps = 20/315 (6%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARR+GV +AM A LCP L+ VP DF +Y S ++ + SLDEAYL
Sbjct: 52 ARRYGVHSAMSSARALHLCPRLLIVPPDFARYKTASQQILAIYQDFTELVEPLSLDEAYL 111
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-P 126
D++ +G + + +AE +R+ + +E G+T SAG+APN+ LAKV SD NKP+GQFV+ P
Sbjct: 112 DVSGRPHYQGSASL-MAEAIRSRIRDEVGITASAGIAPNKFLAKVASDWNKPDGQFVIRP 170
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH--STAD 184
D V F+ +LP+ KI G+G VT L G+ CE++ +G L + H +
Sbjct: 171 ED---VDAFVLALPVEKIPGVGAVTASRLH-ALGVRHCEDV--RGWELAELVRHFGRFGE 224
Query: 185 FFLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLR 243
++ G+ R RKSIS E T++V D KL E+ E L+ +++ G
Sbjct: 225 RLHALARGIDPRPVSIERLRKSISVEETYAVDLPDLDACLAKLPELLERLAHRLERAGQP 284
Query: 244 G-RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQFN 302
R L++KLK A F T+ Q S D L + A +RL+G+ V
Sbjct: 285 AFRGLSVKLKFADF---TQTTVEQAGQQLSRDTLAALLQVGHARGAQPVRLLGVGVRLAA 341
Query: 303 EDKVRAPSDPTQKTL 317
+D ++P Q L
Sbjct: 342 DD-----TEPRQLAL 351
>gi|41057942|gb|AAR98928.1| SOS inducible DNA polymerase, partial [Escherichia coli]
Length = 324
Score = 145 bits (367), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 91/234 (38%), Positives = 132/234 (56%), Gaps = 13/234 (5%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR+AMP +A KLCP L +P F Y S+ R++F +Y SLDEAYL
Sbjct: 30 ARKFGVRSAMPTGMALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYL 89
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-P 126
D+T+ G S IA+E+R +++ E LT SAGVAP + LAK+ SD+NKPNGQFV+ P
Sbjct: 90 DVTDSVHCHG-SATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITP 148
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHST-ADF 185
+ V TF+ +LP+ KI G+GKV+ L + G+ TC ++ QK L+ +
Sbjct: 149 AE---VPTFLQTLPLAKIPGVGKVSAAKL-EAMGLRTCGDV-QKCDLVILLKRFGKFGRI 203
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFS-----VTEDKALLYRKLAEIAEMLS 234
G+ + R RKS+ ERT + +E +A++ R E+ L+
Sbjct: 204 LWERSQGIDERDVNSERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLA 257
>gi|19568895|gb|AAL91959.1|AF483096_1 DNA polymerase DinB [Escherichia coli]
gi|19568897|gb|AAL91960.1|AF483097_1 DNA polymerase DinB [Escherichia coli]
gi|19568899|gb|AAL91961.1|AF483098_1 DNA polymerase DinB [Escherichia coli]
Length = 336
Score = 145 bits (367), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 106/302 (35%), Positives = 161/302 (53%), Gaps = 16/302 (5%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR+AMP +A KLCP L +P F Y S+ R++F +Y SLDEAYL
Sbjct: 42 ARKFGVRSAMPTGMALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYL 101
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-P 126
D+T+ G S IA+E+R +++ E LT SAGVAP + LAK+ SD+NKPNGQFV+ P
Sbjct: 102 DVTDSVHCHG-SATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITP 160
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHST-ADF 185
+ V TF+ +LP+ KI G+GKV+ L + G+ TC + +QK L+ +
Sbjct: 161 AE---VPTFLQTLPLAKIPGVGKVSAAKL-EAMGLRTCGD-VQKCDLVTLLKRFGKFGRI 215
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFS-----VTEDKALLYRKLAEIAEMLSADMQKE 240
G+ + R RKS+ ERT + +E +A++ R E+ L A ++ +
Sbjct: 216 LWERSQGIDERDVNSERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRL-AKVKPD 274
Query: 241 GLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQ 300
L R +KLK F+ T+ + ++ ++ I + +RL+GL VT
Sbjct: 275 LLIARQ-GVKLKFDDFQQTTQEHVWPR-LNKADLIATARKTWDERRGGRGVRLVGLHVTL 332
Query: 301 FN 302
+
Sbjct: 333 LD 334
>gi|302346217|ref|YP_003814515.1| DNA polymerase IV [Prevotella melaninogenica ATCC 25845]
gi|302150325|gb|ADK96586.1| DNA polymerase IV [Prevotella melaninogenica ATCC 25845]
Length = 366
Score = 145 bits (367), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 107/301 (35%), Positives = 162/301 (53%), Gaps = 19/301 (6%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FGV +AM A++ CP+LI V + F +Y S VF +Y SLDEA+L
Sbjct: 47 ARPFGVHSAMSMAQAKRRCPQLIVVSSHFDRYKEVSRQIHAVFHEYTDLVEPISLDEAFL 106
Query: 68 DITEVCRERGIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP 126
D++E ++GI ++IA+E++ ++E LT SAG++ N+LLAK+ SD+ KPNG F +
Sbjct: 107 DVSE--NKKGIELAVDIAKEIKQKIFERTSLTASAGISYNKLLAKIASDMRKPNGIFTVH 164
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHSTADF 185
DR + FI LPI K+ G+G T + + G+ T E++ + L VF +
Sbjct: 165 PDR--ALDFIGKLPIEKLWGVGPKTAERMHSM-GVFTGEQLREISREHLVQVFG-KMGNV 220
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSV---TEDKALLYRKLAEIAEMLSADMQKEGL 242
+ G+ + A RKS+ ERTF E K ++ +L I L ++ +
Sbjct: 221 YYDFSRGIDNRPVIVAYERKSVGCERTFLEDLHVESKIII--ELYHITLELVERIKTKDF 278
Query: 243 RGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK----AELPVSLRLIGLRV 298
+GRTLTLKLK + TR++T K + + +DIL A LLK P+ RL+GL V
Sbjct: 279 KGRTLTLKLKWDATTQITRSLTQDKILRTKDDILPLAKQLLKDTDYHNRPI--RLMGLSV 336
Query: 299 T 299
+
Sbjct: 337 S 337
>gi|332281409|ref|ZP_08393822.1| DNA polymerase IV [Shigella sp. D9]
gi|417627167|ref|ZP_12277415.1| DNA polymerase IV [Escherichia coli STEC_MHI813]
gi|432748683|ref|ZP_19983307.1| DNA polymerase IV [Escherichia coli KTE29]
gi|332103761|gb|EGJ07107.1| DNA polymerase IV [Shigella sp. D9]
gi|345378609|gb|EGX10537.1| DNA polymerase IV [Escherichia coli STEC_MHI813]
gi|431300789|gb|ELF90337.1| DNA polymerase IV [Escherichia coli KTE29]
Length = 351
Score = 145 bits (367), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 91/234 (38%), Positives = 132/234 (56%), Gaps = 13/234 (5%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR+AMP +A KLCP L +P F Y S+ R++F +Y SLDEAYL
Sbjct: 48 ARKFGVRSAMPTGMALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYL 107
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-P 126
D+T+ G S IA+E+R +++ E LT SAGVAP + LAK+ SD+NKPNGQFV+ P
Sbjct: 108 DVTDSVHCHG-SATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITP 166
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHST-ADF 185
+ V TF+ +LP+ KI G+GKV+ L + G+ TC + +QK L+ +
Sbjct: 167 AE---VPTFLQTLPLAKIPGVGKVSAAKL-EAMGLRTCGD-VQKCDLVILLKRFGKFGRI 221
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFS-----VTEDKALLYRKLAEIAEMLS 234
G+ + R RKS+ ERT + +E +A++ R E+ L+
Sbjct: 222 LWERSQGIDERDVNSERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLA 275
>gi|432541635|ref|ZP_19778496.1| DNA polymerase IV [Escherichia coli KTE236]
gi|432546975|ref|ZP_19783773.1| DNA polymerase IV [Escherichia coli KTE237]
gi|432620356|ref|ZP_19856404.1| DNA polymerase IV [Escherichia coli KTE76]
gi|432813757|ref|ZP_20047568.1| DNA polymerase IV [Escherichia coli KTE115]
gi|431078152|gb|ELD85210.1| DNA polymerase IV [Escherichia coli KTE236]
gi|431085457|gb|ELD91562.1| DNA polymerase IV [Escherichia coli KTE237]
gi|431163277|gb|ELE63711.1| DNA polymerase IV [Escherichia coli KTE76]
gi|431368776|gb|ELG55007.1| DNA polymerase IV [Escherichia coli KTE115]
Length = 351
Score = 145 bits (367), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 91/234 (38%), Positives = 132/234 (56%), Gaps = 13/234 (5%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR+AMP +A KLCP L +P F Y S+ R++F +Y SLDEAYL
Sbjct: 48 ARKFGVRSAMPTGMALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYL 107
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-P 126
D+T+ G S IA+E+R +++ E LT SAGVAP + LAK+ SD+NKPNGQFV+ P
Sbjct: 108 DVTDSVHCHG-SATLIAQEIRQTIFSELQLTASAGVAPVKFLAKIASDMNKPNGQFVITP 166
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHST-ADF 185
+ V TF+ +LP+ KI G+GKV+ L + G+ TC + +QK L+ +
Sbjct: 167 AE---VPTFLQTLPLAKIPGVGKVSAAKL-EAMGLRTCGD-VQKCDLVTLLKRFGKFGRI 221
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFS-----VTEDKALLYRKLAEIAEMLS 234
G+ + R RKS+ ERT + +E +A++ R E+ L+
Sbjct: 222 LWERSQGIDERDVNSERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLA 275
>gi|303248472|ref|ZP_07334730.1| DNA-directed DNA polymerase [Desulfovibrio fructosovorans JJ]
gi|302490092|gb|EFL50012.1| DNA-directed DNA polymerase [Desulfovibrio fructosovorans JJ]
Length = 388
Score = 145 bits (367), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 103/299 (34%), Positives = 152/299 (50%), Gaps = 6/299 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FGV +AMP A++ CP +F+P + +Y S L P AS+DEAY+
Sbjct: 46 ARTFGVHSAMPVAEAKRRCPHGVFLPGNRRRYAEVSRLVMATLQAVSPLVEPASIDEAYV 105
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
DIT G + L++ + E GL CS G+AP + +AK+ SD +KP+G ++
Sbjct: 106 DITGTETLFGPPET-LGRRLKSMIREATGLNCSVGIAPVKFIAKIASDYDKPDGLTIVAP 164
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
D++++ F++ LP+ KI G+GK + L GI E+ Q
Sbjct: 165 DQVSL--FLADLPVGKIPGVGKRAQAAL-SRLGIRVVGEIPQYPPEFWQRHLGKWGLDLY 221
Query: 188 SVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRT 246
+ G GS R KS+S+E TFS T D+A L L +E + +++++ GRT
Sbjct: 222 ARACGQGSDTVNPCREAKSVSAENTFSTDTADRARLAAWLLHQSERVGRELRRDNQSGRT 281
Query: 247 LTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFNED 304
+TLKLK F TR+ TL +S I A LL+AE LP LRLIG+ V+ F +
Sbjct: 282 ITLKLKFNDFRQITRSRTLPDPTASDTVIYAVAKELLEAEPLPKPLRLIGVGVSNFGNE 340
>gi|301019119|ref|ZP_07183323.1| DNA polymerase IV [Escherichia coli MS 69-1]
gi|331661627|ref|ZP_08362550.1| DNA polymerase IV [Escherichia coli TA143]
gi|419917055|ref|ZP_14435335.1| DNA polymerase IV [Escherichia coli KD2]
gi|422330511|ref|ZP_16411528.1| DNA polymerase IV [Escherichia coli 4_1_47FAA]
gi|432390183|ref|ZP_19633048.1| DNA polymerase IV [Escherichia coli KTE21]
gi|432769059|ref|ZP_20003434.1| DNA polymerase IV [Escherichia coli KTE50]
gi|432791514|ref|ZP_20025608.1| DNA polymerase IV [Escherichia coli KTE78]
gi|432797481|ref|ZP_20031509.1| DNA polymerase IV [Escherichia coli KTE79]
gi|432959552|ref|ZP_20149930.1| DNA polymerase IV [Escherichia coli KTE202]
gi|433061471|ref|ZP_20248440.1| DNA polymerase IV [Escherichia coli KTE125]
gi|300399378|gb|EFJ82916.1| DNA polymerase IV [Escherichia coli MS 69-1]
gi|331060049|gb|EGI32013.1| DNA polymerase IV [Escherichia coli TA143]
gi|373248531|gb|EHP67959.1| DNA polymerase IV [Escherichia coli 4_1_47FAA]
gi|388394924|gb|EIL56165.1| DNA polymerase IV [Escherichia coli KD2]
gi|430922926|gb|ELC43664.1| DNA polymerase IV [Escherichia coli KTE21]
gi|431319354|gb|ELG07025.1| DNA polymerase IV [Escherichia coli KTE50]
gi|431342310|gb|ELG29289.1| DNA polymerase IV [Escherichia coli KTE78]
gi|431345701|gb|ELG32615.1| DNA polymerase IV [Escherichia coli KTE79]
gi|431479984|gb|ELH59715.1| DNA polymerase IV [Escherichia coli KTE202]
gi|431588521|gb|ELI59795.1| DNA polymerase IV [Escherichia coli KTE125]
Length = 351
Score = 145 bits (367), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 91/234 (38%), Positives = 132/234 (56%), Gaps = 13/234 (5%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR+AMP +A KLCP L +P F Y S+ R++F +Y SLDEAYL
Sbjct: 48 ARKFGVRSAMPTGMALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYL 107
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-P 126
D+T+ G S IA+E+R +++ E LT SAGVAP + LAK+ SD+NKPNGQFV+ P
Sbjct: 108 DVTDSVHCHG-SATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITP 166
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHST-ADF 185
+ V TF+ +LP+ KI G+GKV+ L + G+ TC + +QK L+ +
Sbjct: 167 AE---VPTFLQTLPLAKIPGVGKVSAAKL-EAMGLRTCGD-VQKCDLVTLLKRFGKFGRI 221
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFS-----VTEDKALLYRKLAEIAEMLS 234
G+ + R RKS+ ERT + +E +A++ R E+ L+
Sbjct: 222 LWERSQGIDERDVNSERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLA 275
>gi|255100011|ref|ZP_05328988.1| DNA polymerase IV [Clostridium difficile QCD-63q42]
gi|255305898|ref|ZP_05350070.1| DNA polymerase IV [Clostridium difficile ATCC 43255]
gi|423090257|ref|ZP_17078565.1| putative DNA polymerase IV [Clostridium difficile 70-100-2010]
gi|357556932|gb|EHJ38503.1| putative DNA polymerase IV [Clostridium difficile 70-100-2010]
Length = 365
Score = 145 bits (367), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 102/309 (33%), Positives = 163/309 (52%), Gaps = 22/309 (7%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG+ +AMP +A CP +FV F Y S+ R +F +Y SLDEAYL
Sbjct: 51 ARKFGIHSAMPSAVAYNRCPYAVFVRPRFDVYKSVSEQIRDIFYRYTDLVEPLSLDEAYL 110
Query: 68 DITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP 126
D+T+ ++ I S IEIA++++ ++ E GLT SAGV+ N+ LAK+ SD+ KPNG V+
Sbjct: 111 DVTK--NKKNIDSSIEIAKQIKKDIFREVGLTSSAGVSYNKFLAKIASDLRKPNGLTVIT 168
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINT-----CEEMLQKGSLLCAVFSHS 181
+ F+ LP+ K G+GKVT + L+++ GI T C + + L +F
Sbjct: 169 EEN--AQDFLDKLPVNKFFGVGKVTSNTLKNL-GIKTGYDLRCLNLFE----LENIFKKR 221
Query: 182 TADFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQK 239
+ + G+ R RKS+ +E T S + D+ L E+ E + ++
Sbjct: 222 GYELY-KFARGIDDRPVEPNRVRKSVGAETTLSHNLDIDEEETRNILDELCEEVCHRLKN 280
Query: 240 EGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS---LRLIGL 296
G+TLTLK+K F TR+++L+ YI DI LL+ + V+ +RL+G+
Sbjct: 281 SEKFGKTLTLKIKYEDFTKITRSLSLEHYIDEYNDIRSGVDNLLR-NVEVNGKQIRLLGV 339
Query: 297 RVTQFNEDK 305
++ ++ K
Sbjct: 340 TISNLSDKK 348
>gi|157871748|ref|XP_001684423.1| putative DNA polymerase kappa [Leishmania major strain Friedlin]
gi|68127492|emb|CAJ05431.1| putative DNA polymerase kappa [Leishmania major strain Friedlin]
Length = 751
Score = 145 bits (367), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 107/341 (31%), Positives = 164/341 (48%), Gaps = 56/341 (16%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEA-- 65
AR++GV++ MPGFI +LCP+L+ VPTDF S + V +YDP+ +DE
Sbjct: 273 ARKYGVQSGMPGFIGMRLCPQLVIVPTDFAACRVESAKFKGVVREYDPDAQLLGMDEVMM 332
Query: 66 ---------YLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDI 116
++D+T ++ + EE R + E GLT SAG+AP LAK+ S+
Sbjct: 333 CLDDYLAHHHVDVTTHAGRFDVAE-RVIEECRRRIAEATGLTVSAGIAPTPTLAKMASNY 391
Query: 117 NKPNGQFVLP-NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLC 175
KPNGQF + R AV+ +++S+P+R++ GIGK E IL + GI T E+ ++ L
Sbjct: 392 KKPNGQFAVRLFSREAVINYLASIPVRQVPGIGKSRESILAGL-GIRTLGEVYEQRHRLF 450
Query: 176 AVFSHSTADFFLSVGLGLGST-----NTPQARF---------------------RKSISS 209
+ + T +F L+ +G+G P + RKS+
Sbjct: 451 YILTRKTYEFLLASSIGIGGMYDSRETAPSSSAGATTGKTVAAMDGASNEDDWGRKSVGH 510
Query: 210 ERTFSVTEDK----ALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTL 265
ERTF ++ A+ Y+ L E L +EGL + LKLK SF V+ + +L
Sbjct: 511 ERTFYKLMNRMALQAIAYKNLRRSQETLV----EEGLLCSQVVLKLKHHSFHVKQHSKSL 566
Query: 266 QKYISSSEDILKHASVLLKAELPV-----SLRLIGLRVTQF 301
Y E + + LL LPV RL+G+R+ +
Sbjct: 567 NVYTDDHEVLRRALDELL---LPVMDDFAEFRLLGVRLEKL 604
>gi|456863265|gb|EMF81755.1| ImpB/MucB/SamB family protein [Leptospira weilii serovar Topaz str.
LT2116]
Length = 352
Score = 145 bits (367), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 99/307 (32%), Positives = 163/307 (53%), Gaps = 18/307 (5%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR+AMP A +L P+ IFV F Y SD R++F +Y SLDE YL
Sbjct: 40 ARKFGVRSAMPCSKAAQLAPQAIFVSPRFKAYKEVSDRIREIFLEYTDRVEMLSLDEGYL 99
Query: 68 DITEVCRERGIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVL 125
D+T ++ I + IA+E+R+ +++ LT SAGV ++ +AK+ S+ NKPNG VL
Sbjct: 100 DVT--FNKKNIPFAVTIAKEIRSEIFKRTELTASAGVGNSKFIAKLASEKNKPNGLAVVL 157
Query: 126 PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADF 185
P+D V+ FI LP+ G+GKVT ++++ I T +++ K +
Sbjct: 158 PDD---VIAFIDPLPVSSFHGVGKVTAQKMKEL-EIYTGKDLRAKNIDELVQHFGKMGIY 213
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSVTE-DKALLYRKLAEIAEMLSADMQKEGLRG 244
+ + G R RKS+ +E TF + D+ L ++L E+A + +++ G
Sbjct: 214 YYKISRGEDEREVESCRERKSLGAENTFHQDKIDREDLLQQLREVAVEVERRLKERDFAG 273
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV---------SLRLIG 295
+TLTLK+K F +RTR+ TL + I +++ A+ L + + ++RL+G
Sbjct: 274 KTLTLKIKFQDFSLRTRSKTLSEPIFGVDELYSVAAELFEEFFEIKNGKQISIKAIRLLG 333
Query: 296 LRVTQFN 302
+ ++ N
Sbjct: 334 INLSHPN 340
>gi|161594047|ref|NP_904033.2| DNA polymerase IV [Chromobacterium violaceum ATCC 12472]
Length = 379
Score = 145 bits (367), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 95/254 (37%), Positives = 140/254 (55%), Gaps = 12/254 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARR+GV +AM A +LCPEL+ VP D +Y S ++ +Y SLDEAYL
Sbjct: 52 ARRYGVHSAMSSARALRLCPELLIVPPDMARYRLASQQIMAIYQRYTEVIEPLSLDEAYL 111
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-P 126
D+T ERG S +AE +R + +E G+T SAG+APN+ LAKV SD NKP+GQ+++ P
Sbjct: 112 DVTGQPHERG-SATLMAEAIRRQIRDEVGITASAGIAPNKFLAKVASDWNKPDGQYLIRP 170
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH--STAD 184
D + F++ LP+ KI G+G+VT L + GI +C ++ + +F H S +
Sbjct: 171 RD---IDAFVAVLPVEKIHGVGRVTAERLHRL-GIRSCGDLRRWSP--ADLFRHFGSFGE 224
Query: 185 FFLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLR 243
L++ G R RK+IS E T++ D A KL E+ + L A + + G
Sbjct: 225 RLLALAHGRDERPVSTDRSRKTISVEETYAQDLPDLASCLSKLPELVDRLQARLARSGSP 284
Query: 244 G-RTLTLKLKTASF 256
+ L++KLK F
Sbjct: 285 AFKGLSVKLKFDDF 298
>gi|359446237|ref|ZP_09235933.1| DNA polymerase IV [Pseudoalteromonas sp. BSi20439]
gi|358039920|dbj|GAA72182.1| DNA polymerase IV [Pseudoalteromonas sp. BSi20439]
Length = 334
Score = 145 bits (367), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 97/262 (37%), Positives = 151/262 (57%), Gaps = 23/262 (8%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR +GVR+AM + A++LCP+L+ VP Y S R +F +Y SLDEAYL
Sbjct: 30 AREYGVRSAMSNYHAKQLCPDLVIVPGRMAVYKQVSTQIRAIFNRYTDLVEPLSLDEAYL 89
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLP 126
D+T+ +G S IAE++RT ++ GLT SAG+AP + +AK+ SD NKPNGQF VLP
Sbjct: 90 DVTDSTAFKG-SATLIAEQIRTDIFNTTGLTASAGIAPIKFIAKIASDENKPNGQFVVLP 148
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFF 186
V F++ LP+ KI G+GKVT L ++ G+ T +++ +KG+ +F
Sbjct: 149 EQ---VDLFLAQLPLGKIPGVGKVTLEKL-NLKGLYTGQDVREKGA---NWMQQHVGNFG 201
Query: 187 LSV-----GLGLGSTNTPQARFRKSISSERTFSVTE---DKALLYRKLAEIAEMLSADMQ 238
+S+ G +G +T R RKS+S E T+ + D+ L +L ++ + L+ +
Sbjct: 202 VSLYQKCMGDHIGRVST--ERVRKSLSVEHTYEYNKNSLDECL--EQLPQLLDELTVRLN 257
Query: 239 KEGLRGRT--LTLKLKTASFEV 258
K+ L+ + L++K+K A+F V
Sbjct: 258 KQQLQNKINKLSVKVKFANFVV 279
>gi|257897187|ref|ZP_05676840.1| DNA damage inducible protein P, partial [Enterococcus faecium
Com12]
gi|257833752|gb|EEV60173.1| DNA damage inducible protein P [Enterococcus faecium Com12]
Length = 371
Score = 145 bits (367), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 101/304 (33%), Positives = 163/304 (53%), Gaps = 19/304 (6%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG+ +AM A +LCP+ IF P D KY+ S R+VF Y S+DEAYL
Sbjct: 65 ARKFGIHSAMSAQKAYELCPQAIFKPGDHHKYSEISKQVREVFYHYTDIVEPVSIDEAYL 124
Query: 68 DITEV---CRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QF 123
D+TE C+ S I+IA ++ ++E LTCSAGV+ N+ LAK+ SD KP G
Sbjct: 125 DVTENKINCK----SAIKIARMIQADIWERVQLTCSAGVSYNKFLAKLASDYQKPRGITV 180
Query: 124 VLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHST 182
V P D + F+ +LPI K G+GK T + ++ GI T +++ + + L F
Sbjct: 181 VAPQD---AVPFLKTLPIEKFHGVGKKTVPRMHEL-GIYTGKDLYECTEMTLIRNFGKMG 236
Query: 183 ADFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKE 240
+ V G+ + R RKS+ E T+ + ++A+L +L ++AE + +++
Sbjct: 237 YSLYRKVR-GIHDSPVNVTRERKSVGKEHTYGQPLQTEEAVL-AQLRQLAEKVEEALRRV 294
Query: 241 GLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRV 298
G+T+ LK++ + T+ VTL +YI E + AS++ + L V +RL+G+ +
Sbjct: 295 QKHGKTVVLKVRYTDYSTVTKRVTLPEYIYKKEALFYQASLIWEEILGVEKGIRLLGITL 354
Query: 299 TQFN 302
T +
Sbjct: 355 TNLD 358
>gi|146317857|ref|YP_001197569.1| DNA polymerase IV [Streptococcus suis 05ZYH33]
gi|145688663|gb|ABP89169.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Streptococcus suis 05ZYH33]
Length = 337
Score = 145 bits (366), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 101/312 (32%), Positives = 168/312 (53%), Gaps = 35/312 (11%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FG+ +AM A + CP+ IF+ ++ KY R++F +Y S+DEAYL
Sbjct: 43 ARAFGIHSAMSSKEAYERCPQAIFISGNYEKYQEVGRQVREIFHRYTDLVEPMSIDEAYL 102
Query: 68 DITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVL 125
D+TE + GI S ++IA+ ++ ++ E LT SAGV+ N+ LAK+ SD+ KP+G +L
Sbjct: 103 DVTE--NKLGISSAVKIAKLIQYDIWNELHLTASAGVSYNKFLAKIASDMEKPHGLTLIL 160
Query: 126 PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADF 185
P D + ++ +SLP+ K G+GK T L ++ G+ T +++L ++ D
Sbjct: 161 PEDAVGIL---ASLPVEKFHGVGKKTVERLHEM-GVYTGQDLLDVPEMVL-------IDR 209
Query: 186 FLSVGLGL-----GSTNTPQA--RFRKSISSERTFSVTEDKALLYR------KLAEIAEM 232
F G L G +N+P R RKS ERT+ + LLYR +L + +
Sbjct: 210 FGRFGFDLYRKARGISNSPVKVDRVRKSSGKERTY-----RKLLYREEDVLKELISLCQR 264
Query: 233 LSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVS 290
++A +++ G +GRT+ LK++ F T+ +L+ Y +E I K L++ ++
Sbjct: 265 VAASLKRNGKKGRTIVLKVRYGDFSTLTKRHSLEVYTDQTETIEKEVRQLIEEIGKIEKG 324
Query: 291 LRLIGLRVTQFN 302
+RL+G+ VT F
Sbjct: 325 IRLLGVTVTNFQ 336
>gi|93006387|ref|YP_580824.1| DNA-directed DNA polymerase [Psychrobacter cryohalolentis K5]
gi|92394065|gb|ABE75340.1| DNA-directed DNA polymerase [Psychrobacter cryohalolentis K5]
Length = 371
Score = 145 bits (366), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 101/268 (37%), Positives = 141/268 (52%), Gaps = 9/268 (3%)
Query: 9 RRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLD 68
R+FGVR+AM + ARK CPE+IFVP F Y S R++ P+ SLDEAYLD
Sbjct: 67 RKFGVRSAMSCYEARKRCPEVIFVPPRFDVYRAVSVEIRRIMHILTPHVEPLSLDEAYLD 126
Query: 69 ITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PN 127
+T + +G S +A LR + + GL SAGV+ N++LAK+ SDINKPNG V+ P
Sbjct: 127 VTGLSVHQG-SATLMANWLRAQILGQTGLNASAGVSFNKMLAKIASDINKPNGTAVITPA 185
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
D A FIS+LPI + GIGK T L + N + ++L F F+
Sbjct: 186 DADA---FISALPIERFHGIGKATAKRLHAMGVSNGADLRRTPAAILVNEFG-KRGQFYH 241
Query: 188 SVGLGLGSTNTPQARFRKSISSERTF--SVTEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
+ G R KS+ SE TF ++T+D L + + A+ S + K+ L
Sbjct: 242 DIAHGRDERAVKSERTHKSVGSETTFRENLTDDNELKIQIYEQNADAFS-QLHKKQLIAY 300
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSE 273
T+TLK+K + F TR+ TL S+E
Sbjct: 301 TITLKVKYSDFTQVTRSHTLSTAFDSAE 328
>gi|170727937|ref|YP_001761963.1| DNA polymerase IV [Shewanella woodyi ATCC 51908]
gi|254781923|sp|B1KD33.1|DPO4_SHEWM RecName: Full=DNA polymerase IV; Short=Pol IV
gi|169813284|gb|ACA87868.1| DNA-directed DNA polymerase [Shewanella woodyi ATCC 51908]
Length = 364
Score = 145 bits (366), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 77/160 (48%), Positives = 104/160 (65%), Gaps = 4/160 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FGVR+AM A KLCP+LI VP + Y S R +F +Y SLDEAYL
Sbjct: 52 ARAFGVRSAMASGYALKLCPDLILVPGRMSVYKEVSAQIRDIFARYTDLIEPLSLDEAYL 111
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+TE C++ S IA+ +R ++E GLT SAG+AP + LAKV SD+NKPNGQ+V+
Sbjct: 112 DVTE-CKQCQGSATLIAQAIRQEIFEVTGLTASAGIAPVKFLAKVASDLNKPNGQYVITP 170
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM 167
D ++ +FI++LP+ KI G+GKVT L D+ G+ TC E+
Sbjct: 171 DMIS--SFITTLPLTKIPGVGKVTGKKLEDI-GLTTCGEL 207
>gi|386579169|ref|YP_006075574.1| DNA polymerase IV [Streptococcus suis JS14]
gi|319757361|gb|ADV69303.1| DNA polymerase IV [Streptococcus suis JS14]
Length = 355
Score = 145 bits (366), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 101/312 (32%), Positives = 168/312 (53%), Gaps = 35/312 (11%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FG+ +AM A + CP+ IF+ ++ KY R++F +Y S+DEAYL
Sbjct: 61 ARAFGIHSAMSSKEAYERCPQAIFISGNYEKYQEVGRQVREIFHRYTDLVEPMSIDEAYL 120
Query: 68 DITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVL 125
D+TE + GI S ++IA+ ++ ++ E LT SAGV+ N+ LAK+ SD+ KP+G +L
Sbjct: 121 DVTE--NKLGISSAVKIAKLIQYDIWNELHLTASAGVSYNKFLAKIASDMEKPHGLTLIL 178
Query: 126 PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADF 185
P D + ++ +SLP+ K G+GK T L ++ G+ T +++L ++ D
Sbjct: 179 PEDAVGIL---ASLPVEKFHGVGKKTVERLHEM-GVYTGQDLLDVPEMVL-------IDR 227
Query: 186 FLSVGLGL-----GSTNTPQA--RFRKSISSERTFSVTEDKALLYR------KLAEIAEM 232
F G L G +N+P R RKS ERT+ + LLYR +L + +
Sbjct: 228 FGRFGFDLYRKARGISNSPVKVDRVRKSSGKERTY-----RKLLYREEDVLKELISLCQR 282
Query: 233 LSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVS 290
++A +++ G +GRT+ LK++ F T+ +L+ Y +E I K L++ ++
Sbjct: 283 VAASLKRNGKKGRTIVLKVRYGDFSTLTKRHSLEVYTDKTETIEKEVRQLIEEIGKIEKG 342
Query: 291 LRLIGLRVTQFN 302
+RL+G+ VT F
Sbjct: 343 IRLLGVTVTNFQ 354
>gi|146320049|ref|YP_001199760.1| DNA polymerase IV [Streptococcus suis 98HAH33]
gi|253751099|ref|YP_003024240.1| DNA polymerase IV [Streptococcus suis SC84]
gi|253753000|ref|YP_003026140.1| DNA polymerase IV [Streptococcus suis P1/7]
gi|253754823|ref|YP_003027963.1| DNA polymerase IV [Streptococcus suis BM407]
gi|386577190|ref|YP_006073595.1| DNA-directed DNA polymerase [Streptococcus suis GZ1]
gi|386581236|ref|YP_006077640.1| DNA polymerase IV [Streptococcus suis SS12]
gi|386587467|ref|YP_006083868.1| DNA polymerase IV [Streptococcus suis A7]
gi|403060877|ref|YP_006649093.1| DNA polymerase IV [Streptococcus suis S735]
gi|189044615|sp|A4VZ21.1|DPO4_STRS2 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|145690855|gb|ABP91360.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Streptococcus suis 98HAH33]
gi|251815388|emb|CAZ50961.1| DNA polymerase IV [Streptococcus suis SC84]
gi|251817287|emb|CAZ55017.1| DNA polymerase IV [Streptococcus suis BM407]
gi|251819245|emb|CAR44505.1| DNA polymerase IV [Streptococcus suis P1/7]
gi|292557652|gb|ADE30653.1| DNA-directed DNA polymerase [Streptococcus suis GZ1]
gi|353733382|gb|AER14392.1| DNA polymerase IV [Streptococcus suis SS12]
gi|354984628|gb|AER43526.1| DNA polymerase IV [Streptococcus suis A7]
gi|402808203|gb|AFQ99694.1| DNA polymerase IV [Streptococcus suis S735]
Length = 355
Score = 145 bits (366), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 101/312 (32%), Positives = 168/312 (53%), Gaps = 35/312 (11%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FG+ +AM A + CP+ IF+ ++ KY R++F +Y S+DEAYL
Sbjct: 61 ARAFGIHSAMSSKEAYERCPQAIFISGNYEKYQEVGRQVREIFHRYTDLVEPMSIDEAYL 120
Query: 68 DITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVL 125
D+TE + GI S ++IA+ ++ ++ E LT SAGV+ N+ LAK+ SD+ KP+G +L
Sbjct: 121 DVTE--NKLGISSAVKIAKLIQYDIWNELHLTASAGVSYNKFLAKIASDMEKPHGLTLIL 178
Query: 126 PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADF 185
P D + ++ +SLP+ K G+GK T L ++ G+ T +++L ++ D
Sbjct: 179 PEDAVGIL---ASLPVEKFHGVGKKTVERLHEM-GVYTGQDLLDVPEMVL-------IDR 227
Query: 186 FLSVGLGL-----GSTNTPQA--RFRKSISSERTFSVTEDKALLYR------KLAEIAEM 232
F G L G +N+P R RKS ERT+ + LLYR +L + +
Sbjct: 228 FGRFGFDLYRKARGISNSPVKVDRVRKSSGKERTY-----RKLLYREEDVLKELISLCQR 282
Query: 233 LSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVS 290
++A +++ G +GRT+ LK++ F T+ +L+ Y +E I K L++ ++
Sbjct: 283 VAASLKRNGKKGRTIVLKVRYGDFSTLTKRHSLEVYTDQTETIEKEVRQLIEEIGKIEKG 342
Query: 291 LRLIGLRVTQFN 302
+RL+G+ VT F
Sbjct: 343 IRLLGVTVTNFQ 354
>gi|311280780|ref|YP_003943011.1| DNA-directed DNA polymerase [Enterobacter cloacae SCF1]
gi|308749975|gb|ADO49727.1| DNA-directed DNA polymerase [Enterobacter cloacae SCF1]
Length = 351
Score = 145 bits (366), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 104/304 (34%), Positives = 160/304 (52%), Gaps = 20/304 (6%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR+AMP +A KLCP L +P F Y S R++F +Y SLDEAYL
Sbjct: 48 ARKFGVRSAMPTAMALKLCPHLTLLPGRFDAYKDASVHIREIFSRYTSLIEPLSLDEAYL 107
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T+ +G S +A+E+R ++++E LT SAGVAP + LAK+ SD+NKPNGQ+V+
Sbjct: 108 DVTDSPHCQG-SATRMAQEIRQTIFDELQLTASAGVAPVKFLAKIASDLNKPNGQYVITP 166
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
D V F+++LP+ KI G+GKV+ L + G+ TC ++ Q L
Sbjct: 167 DE--VPAFLTTLPLAKIPGVGKVSAAKL-ESMGLRTCGDVQQSDLALLLKRFGKFGRVLW 223
Query: 188 SVGLGLGSTNTPQARFRKSISSERTFS-----VTEDKALLYRKLAEIAEMLSADMQKEGL 242
G+ R RKS+ ERT + ++ +A++ R E+ L+ K L
Sbjct: 224 ERSNGVDERGVNNTRLRKSVGVERTLAEDIHDWSDCEAIIERLYPELERRLAK--VKPDL 281
Query: 243 RGRTLTLKLKTASFEVRTRAVTLQKYISSS---EDILKHA-SVLLKAELPVSLRLIGLRV 298
R +KLK F+ +T Q++I + +D++ A + + +RL+GL V
Sbjct: 282 RIARQGVKLKFNDFQ-----LTTQEHIWPTLNKDDLIATAYNTWQERRGGRGVRLVGLHV 336
Query: 299 TQFN 302
T +
Sbjct: 337 TLLD 340
>gi|417840269|ref|ZP_12486413.1| DNA polymerase IV [Haemophilus haemolyticus M19107]
gi|341949079|gb|EGT75689.1| DNA polymerase IV [Haemophilus haemolyticus M19107]
Length = 355
Score = 145 bits (366), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 107/308 (34%), Positives = 156/308 (50%), Gaps = 20/308 (6%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG+ +AMP A K CP LI VP + Y S ++F +Y SLDEAYL
Sbjct: 51 ARKFGLHSAMPTAQAIKKCPNLILVPVNMALYKQVSAQIHQIFHRYTDIIEPLSLDEAYL 110
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-P 126
D+T C++ S IA+E+R ++++E LT SAGVAP + LAK+ SD+NKPNGQFV+ P
Sbjct: 111 DVTH-CQKCSGSATWIAQEIRQAIFDELNLTASAGVAPLKFLAKIASDMNKPNGQFVIKP 169
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFF 186
N+ V FI +L + KI G+GKVT L D+ G+ TC ++ ++
Sbjct: 170 NE---VSEFIKTLSLNKIPGVGKVTSQRLLDM-GLETCADIQNFDQIVLLNQFGKAGKRI 225
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTF-----SVTEDKAL---LYRKLAEIAEMLSADMQ 238
G+ R RKS+ E+T ++ + L LY +L E +S ++
Sbjct: 226 WDFSHGIDDREVQAHRERKSVGVEQTLIENIHTIEQASELLNNLYDELIRRLERVSCNIP 285
Query: 239 KEGLRGRTLTLKLKTASFEVRTRAVT-LQKYISSSEDILKHASVLLKAELPVSLRLIGLR 297
R + +KLK F+V T T L + S + + + K S+RLIGL
Sbjct: 286 LSAF--RKIGVKLKFEDFQVTTLEKTGLPLSLESFQQLFPQIFMRAKGR---SIRLIGLH 340
Query: 298 VTQFNEDK 305
V E+K
Sbjct: 341 VNLPEENK 348
>gi|388602497|ref|ZP_10160893.1| DNA polymerase IV [Vibrio campbellii DS40M4]
gi|444424982|ref|ZP_21220431.1| DNA polymerase IV [Vibrio campbellii CAIM 519 = NBRC 15631]
gi|444241767|gb|ELU53287.1| DNA polymerase IV [Vibrio campbellii CAIM 519 = NBRC 15631]
Length = 357
Score = 145 bits (366), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 115/315 (36%), Positives = 158/315 (50%), Gaps = 32/315 (10%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR+AMP A ++CP L+ VP Y S R +F +Y SLDEAYL
Sbjct: 55 ARKFGVRSAMPTARALQICPNLLVVPGRMHVYKQVSQQIRAIFERYTQLIEPLSLDEAYL 114
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T+ RG S IAE +R ++ E GLT SAG+AP + LAKV SD+NKPNGQFV+P
Sbjct: 115 DVTDSTACRG-SATLIAESIRRDIHTELGLTASAGIAPIKFLAKVASDMNKPNGQFVIPP 173
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFF 186
D+ V + LP+ KI G+GKV+ L G CE++ L F A +
Sbjct: 174 DK--VQEVVDKLPLEKIPGVGKVSLEKLHQA-GFYLCEDIKNSDYRELLRQFGRQGASLW 230
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFS-----------VTEDKALLYRKLAEIAEMLSA 235
G+ R RKS+ ERTFS V EDK L+ +L E S
Sbjct: 231 -KRSHGIDDREVVVERERKSVGVERTFSENIATYDECWQVIEDK--LFPELERRLEKASP 287
Query: 236 D--MQKEGLRGRTLTLKLKTASFEVRT-RAVTLQKYISSSEDILKHASVLLKAELPVSLR 292
D + K+G +KLK A F++ T + Q + + +L+ +LK + +R
Sbjct: 288 DKSIIKQG-------IKLKFADFQLTTIEHIHPQLELEDFKVLLRD---ILKRQNGREIR 337
Query: 293 LIGLRVTQFNEDKVR 307
L+GL V E + R
Sbjct: 338 LLGLSVMLKPEQQAR 352
>gi|392539667|ref|ZP_10286804.1| DNA polymerase IV [Pseudoalteromonas marina mano4]
Length = 342
Score = 145 bits (366), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 102/262 (38%), Positives = 150/262 (57%), Gaps = 23/262 (8%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FGVR+AM + A++LCP+L+ VP Y S R+VF +Y SLDEAYL
Sbjct: 39 AREFGVRSAMSNYHAKQLCPDLVIVPGRMAVYKEISSQIREVFSRYTHLVEPLSLDEAYL 98
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLP 126
D+T+ +G S IA+++R +Y GLT SAGVAP + +AK+ SD NKPNGQF VLP
Sbjct: 99 DVTDSKACKG-SATLIAQQIRADIYNATGLTASAGVAPVKFIAKIASDENKPNGQFVVLP 157
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFF 186
++ V F+ LP+ KI G+GKVT L ++ G+ T +++ +KG +F
Sbjct: 158 DE---VDPFLEQLPLGKIPGVGKVTLERL-NLKGLYTGKDVREKG---VNWMQQHVGNFG 210
Query: 187 LSV-----GLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEM---LSADMQ 238
+S+ G +GS +T R RKS+S E T+ +K L L +I + L+ +
Sbjct: 211 VSLYQKCAGEYIGSVST--ERIRKSLSVEHTYEY--NKTSLQECLDQIPSLIDELTRRLD 266
Query: 239 KEGLRGRT--LTLKLKTASFEV 258
K+ L+ R L++K+K A+F V
Sbjct: 267 KQQLQSRINKLSVKVKFANFVV 288
>gi|239814330|ref|YP_002943240.1| DNA-directed DNA polymerase [Variovorax paradoxus S110]
gi|239800907|gb|ACS17974.1| DNA-directed DNA polymerase [Variovorax paradoxus S110]
Length = 416
Score = 145 bits (366), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 99/297 (33%), Positives = 155/297 (52%), Gaps = 9/297 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGV +AM A KLCP+ I +P DF + YS ++V + P +DE Y+
Sbjct: 88 ARQFGVGSAMGLMKAAKLCPQAIILPVDFEEIRKYSRTFKQVIREVAPLMEDRGVDEVYI 147
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D T+V + G +A ++ ++ + GLTCS GVAPN+L+AK+ S+ NKPNG V+
Sbjct: 148 DFTDVPGGQREGGRSLARLIQKAILDATGLTCSIGVAPNKLIAKMASEFNKPNGISVVYE 207
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQK-GSLLCAVFSHSTADFF 186
D + T I LP RK+ GIG + L+ FGI T ++ + L F ST +
Sbjct: 208 DDL--QTRIWPLPCRKVNGIGPKADEKLKR-FGIETVGQLAARERDWLIQNFGKSTGAWM 264
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFS----VTEDKALLYRKLAEIAEMLSADMQKEGL 242
V G + S+S E TF D+A L + E ++ D+Q++G
Sbjct: 265 HEVAWGRDNRPVVTESEPVSMSRETTFDRDLHAVRDRAELGAIFTHLCEKVAEDLQRKGY 324
Query: 243 RGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK-AELPVSLRLIGLRV 298
G+T+ +KL+ F++ TR T++++ + + I + + LK L LRL+G+RV
Sbjct: 325 VGKTIGIKLRYDDFKIATRDQTIERHTADGKTIRQVGGLCLKRVPLDRPLRLLGVRV 381
>gi|257056496|ref|YP_003134328.1| DNA repair nucleotidyltransferase/DNA polymerase [Saccharomonospora
viridis DSM 43017]
gi|256586368|gb|ACU97501.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Saccharomonospora viridis DSM 43017]
Length = 415
Score = 145 bits (366), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 97/296 (32%), Positives = 154/296 (52%), Gaps = 10/296 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFG+ +AMP ARKLCP +++P Y+ S +F + P SLDEA+L
Sbjct: 72 ARRFGISSAMPVAAARKLCPHAVYLPPSRGLYSEVSRSVMALFREITPLVEPLSLDEAFL 131
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+ R G + EI LR V E G+TCS GVA + +AK+ S + KP+G V+P
Sbjct: 132 DVGGALRRLGATATEIGARLRARVEAEHGVTCSVGVAGMKFVAKLASGMAKPDGMVVVPV 191
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGS-LLCAVFSHSTADFF 186
+ ++F+ LP+ + G+G T +LR G++T ++ L +TA+
Sbjct: 192 EE--TVSFLHPLPVSALWGVGPKTAEVLRG-HGLHTIADIAATPPDRLRRWVGVATAEQL 248
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
++ G KS+ +ERTF D+ R+L +++E +++ ++ GLRGR
Sbjct: 249 HALAHGRDERRVVPETEEKSLGAERTFDTDLSDREAQRRQLLDLSEKVASTLRHRGLRGR 308
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK---AELPVSLRLIGLRV 298
T+++K++ + F TRA TL + +I A LL+ PV RL+G+RV
Sbjct: 309 TVSIKVRFSDFRTVTRARTLPSATDVAREIHSTAVALLEEMGTTAPV--RLLGVRV 362
>gi|126698476|ref|YP_001087373.1| DNA polymerase IV (Pol IV) [Clostridium difficile 630]
gi|123174445|sp|Q18A91.1|DPO4_CLOD6 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|115249913|emb|CAJ67732.1| DNA polymerase IV (Pol IV) [Clostridium difficile 630]
Length = 365
Score = 145 bits (366), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 102/309 (33%), Positives = 163/309 (52%), Gaps = 22/309 (7%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG+ +AMP +A CP +FV F Y S+ R +F +Y SLDEAYL
Sbjct: 51 ARKFGIHSAMPSAVAYNRCPYAVFVRPRFDVYKSVSEKIRDIFYRYTDLVEPLSLDEAYL 110
Query: 68 DITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP 126
D+T+ ++ I S IEIA++++ ++ E GLT SAGV+ N+ LAK+ SD+ KPNG V+
Sbjct: 111 DVTK--NKKNIDSSIEIAKQIKKDIFREVGLTSSAGVSYNKFLAKIASDLRKPNGLTVIT 168
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINT-----CEEMLQKGSLLCAVFSHS 181
+ F+ LP+ K G+GKVT + L+++ GI T C + + L +F
Sbjct: 169 EEN--AQDFLDKLPVNKFFGVGKVTSNTLKNL-GIKTGYDLRCLNLFE----LENIFKKR 221
Query: 182 TADFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQK 239
+ + G+ R RKS+ +E T S + D+ L E+ E + ++
Sbjct: 222 GYELY-KFARGIDDRPVEPNRVRKSVGAETTLSHNLDIDEEETRNILDELCEEVCHRLKN 280
Query: 240 EGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS---LRLIGL 296
G+TLTLK+K F TR+++L+ YI DI LL+ + V+ +RL+G+
Sbjct: 281 SEKFGKTLTLKIKYEDFTKITRSLSLEHYIDEYNDIRSGVDNLLR-NVEVNGKQIRLLGV 339
Query: 297 RVTQFNEDK 305
++ ++ K
Sbjct: 340 TISNLSDKK 348
>gi|338215016|ref|YP_004646508.1| DNA polymerase IV [Runella slithyformis DSM 19594]
gi|336309135|gb|AEI52232.1| DNA polymerase IV [Runella slithyformis DSM 19594]
Length = 355
Score = 145 bits (366), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 110/325 (33%), Positives = 159/325 (48%), Gaps = 29/325 (8%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++GVR+AM +A + CP LIFV F Y Y S+ R +F ++ P SLDEAYL
Sbjct: 48 ARKYGVRSAMSSKVAARKCPALIFVKPRFEVYKYVSEQIRGIFAEFTPLIEPLSLDEAYL 107
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+TE ++ S IA+E++ + E LT SAGV+ N+ LAK+ SD KPNG +V+
Sbjct: 108 DVTENLKKMR-SATLIAQEIKQRIVETTQLTASAGVSYNKFLAKLASDFRKPNGIYVIGP 166
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
D F+++L + K GIGKVT + + GI T ++ K ++
Sbjct: 167 DEGE--AFVANLTVNKFHGIGKVTAEKMNQL-GIQTGMDLKSKTEFFLRTHFGKMGSYYY 223
Query: 188 SVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEM------LSADMQKEG 241
++ G+ R RKS+ SE TF R L +AEM L D+ K
Sbjct: 224 NIARGIDQRPVEADRIRKSVGSENTFD---------RDLETLAEMEGGLLPLIEDVWKWC 274
Query: 242 LR----GRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIG 295
R GRT TLK+K F++ TR+ + I K LL P +RL+G
Sbjct: 275 TRTQIYGRTATLKIKFNDFQMITRSQSAFLPIREKALFEKIIFELLNKNFPTDKPVRLLG 334
Query: 296 LRVTQFNEDKVRAPSDPTQKTLTNF 320
+ + +V P++ Q TL NF
Sbjct: 335 VSIHNL---EVTHPTEGQQLTL-NF 355
>gi|422416497|ref|ZP_16493454.1| DNA polymerase IV [Listeria innocua FSL J1-023]
gi|313623066|gb|EFR93347.1| DNA polymerase IV [Listeria innocua FSL J1-023]
Length = 356
Score = 145 bits (366), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 104/301 (34%), Positives = 158/301 (52%), Gaps = 15/301 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGV +AMP A KLCP IF+ + Y S+ R++F +Y SLDEAYL
Sbjct: 51 ARKFGVHSAMPTRQAAKLCPNGIFIHGNMAHYVEVSNQIREIFSRYTDIIEPLSLDEAYL 110
Query: 68 DITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVL 125
D+TE ++G+ S +A E++ ++Y E LT SAGV+ N+ +AK+ SD KP G V
Sbjct: 111 DVTE--NKKGMKSATMVAREIQQTIYHELALTASAGVSFNKFIAKIASDFKKPAGITVVT 168
Query: 126 PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTA 183
P + A F+ +P+ K G+GKVT L + GI T ++ + L+ + H
Sbjct: 169 PEEAEA---FLEQIPVTKFYGVGKVTAEKLHRL-GIETGADLKKWSEWDLIRELHKHGYH 224
Query: 184 DFFLSVGLGLGSTNTPQARFRKSISSERTFSVTE-DKALLYRKLAEIAEMLSADMQKEGL 242
+ G N P R RKS+ E TF D +L + L + A+ + + K
Sbjct: 225 LYRHVRGRSNNIVN-PH-RDRKSVGKETTFEFNVLDSRILEQSLMQFAKKVEERLIKLQK 282
Query: 243 RGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQ 300
G+T+ LKL+ + F T+ +TL +Y + + I + A++LL+ S+RLIGL VT
Sbjct: 283 HGKTVVLKLRYSDFTTITKRLTLNEYTNDANQIYQAAALLLRESYTGQDSIRLIGLTVTN 342
Query: 301 F 301
Sbjct: 343 L 343
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.318 0.134 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,067,677,456
Number of Sequences: 23463169
Number of extensions: 336580045
Number of successful extensions: 873349
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 5295
Number of HSP's successfully gapped in prelim test: 1945
Number of HSP's that attempted gapping in prelim test: 855080
Number of HSP's gapped (non-prelim): 8714
length of query: 538
length of database: 8,064,228,071
effective HSP length: 148
effective length of query: 390
effective length of database: 8,886,646,355
effective search space: 3465792078450
effective search space used: 3465792078450
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 79 (35.0 bits)