BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009298
(538 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9UBT6|POLK_HUMAN DNA polymerase kappa OS=Homo sapiens GN=POLK PE=1 SV=1
Length = 870
Score = 214 bits (544), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 116/258 (44%), Positives = 168/258 (65%), Gaps = 12/258 (4%)
Query: 77 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 135
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 287 GTSAQEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 345
Query: 136 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 195
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 346 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGS 404
Query: 196 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 255
T+ + RKS+S ERTFS Y E+ L+ D+QKE L+GRT+T+KLK +
Sbjct: 405 THLTRDGERKSMSVERTFSEINKAEEQYSLCQELCSELAQDLQKERLKGRTVTIKLKNVN 464
Query: 256 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVRAP 309
FEV+TRA T+ +S++E+I A LLK E+ P+ LRL+G+R++ F ++ R
Sbjct: 465 FEVKTRASTVSSVVSTAEEIFAIAKELLKTEIDADFPHPLRLRLMGVRISSFPNEEDRKH 524
Query: 310 SDPTQKTLTNFMTSGHAS 327
Q+++ F+ +G+ +
Sbjct: 525 Q---QRSIIGFLQAGNQA 539
Score = 100 bits (250), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 44/69 (63%), Positives = 53/69 (76%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFGVRAAMPGFIA++LCP+LI VP +F KY S +++ YDPNFMA SLDEAYL
Sbjct: 143 ARRFGVRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYL 202
Query: 68 DITEVCRER 76
+IT+ ER
Sbjct: 203 NITKHLEER 211
>sp|Q9QUG2|POLK_MOUSE DNA polymerase kappa OS=Mus musculus GN=Polk PE=1 SV=1
Length = 852
Score = 213 bits (542), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 116/263 (44%), Positives = 167/263 (63%), Gaps = 10/263 (3%)
Query: 77 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 136
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ + R AVM FI
Sbjct: 286 GTSAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPSRSAVMDFI 345
Query: 137 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 196
LPIRK+ GIGKVTE +L GI TC E+ Q+ +LL +FS ++ +FL + LGLGST
Sbjct: 346 KDLPIRKVSGIGKVTEKMLM-ALGIVTCTELYQQRALLSLLFSETSWHYFLHIALGLGST 404
Query: 197 NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 256
+ + RKS+S ERTFS Y E+ L+ D+QKEGL+GRT+T+KLK +F
Sbjct: 405 DLARDGERKSMSVERTFSEISKTEEQYSLCQELCAELAHDLQKEGLKGRTVTIKLKNVNF 464
Query: 257 EVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVRAPS 310
EV+TRA T+ IS++E+I A LL+ E+ P+ LRL+G+R++ F+ + R
Sbjct: 465 EVKTRASTVPAAISTAEEIFAIAKELLRTEVNVGSPHPLRLRLMGVRMSTFSSEDDRKHQ 524
Query: 311 DPTQKTLTNFMTSGHASKKIVGD 333
Q+++ F+ +G+ + GD
Sbjct: 525 ---QRSIIGFLQAGNQALSSTGD 544
Score = 102 bits (255), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 44/69 (63%), Positives = 55/69 (79%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFGVRAAMPGFIA++LCP+LI VP +F KY S +++ +YDPNFMA SLDEAYL
Sbjct: 142 ARRFGVRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILAEYDPNFMAMSLDEAYL 201
Query: 68 DITEVCRER 76
+IT+ +ER
Sbjct: 202 NITQHLQER 210
>sp|O74944|POLK_SCHPO DNA polymerase kappa OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=mug40 PE=1 SV=3
Length = 547
Score = 202 bits (515), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 109/302 (36%), Positives = 182/302 (60%), Gaps = 9/302 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGVR+AMP FIARK+CP+L+ +P + ++Y S + V +YD N AS+DE Y+
Sbjct: 171 ARKFGVRSAMPEFIARKICPDLVVIPLNLSEYAIKSKEIQNVLAQYDSNLCPASIDEFYM 230
Query: 68 DITEVCRERGIS-GIE----IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQ 122
++T R + ++ +E + E++R V+EE G+T S G+A N+LLAK+ S+ KPN Q
Sbjct: 231 NLTSHLRLQELAFTVENITMVVEKIRKQVHEETGVTVSCGIAANKLLAKIASNKRKPNNQ 290
Query: 123 FVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHST 182
F +P D + + F++ LP+R++ GIG+V E L + I TC ++ + +L +F +
Sbjct: 291 FFIPFDEIGISKFMNDLPVREVSGIGRVLEQQLLGL-EIKTCGDIQRNLVILSYIFLPKS 349
Query: 183 ADFFLSVGLGLGSTNTPQ--ARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQK 239
L G G+T + RK+I SE TFS +++ KL + + +S ++QK
Sbjct: 350 FQNLLRCSYGFGTTILDEYGESKRKTIGSEATFSSNLSSPSIIEYKLRLLVQNVSENLQK 409
Query: 240 EGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVT 299
GL ++ +K KT+ F+V T+ ++ ++I S D+LK A LL+ P+++RL+G+R T
Sbjct: 410 RGLVTNSIAIKYKTSEFQVHTKQKSIGQFIHSESDLLKPALQLLRQSYPMTIRLLGVRAT 469
Query: 300 QF 301
+
Sbjct: 470 KL 471
>sp|P34409|POLK_CAEEL DNA polymerase kappa OS=Caenorhabditis elegans GN=polk-1 PE=3 SV=3
Length = 596
Score = 201 bits (510), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 148/391 (37%), Positives = 204/391 (52%), Gaps = 69/391 (17%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTD---FTKYT---------------------YYS 43
ARRFGVRA MPGFI+ KLCP L VP + +TK + +
Sbjct: 125 ARRFGVRAGMPGFISNKLCPSLTIVPGNYPKYTKVSRQFSQIFMEYDSDVGMMSLDEAFI 184
Query: 44 DLT--------RKVF----------C---KYDPN---FMAASLDEAYLDITEVCR----- 74
DLT +K F C ++D N ++E+ E R
Sbjct: 185 DLTDYVASNTEKKTFKRHRFGGDCPCWLPRFDENENTLEDLKIEESICPKCEKSRKIYYD 244
Query: 75 --ERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAV 132
E G E E+R V + GLTCSAG+A N +LAK+CSD+NKPNGQ+VL ND+ A+
Sbjct: 245 HVEFGTGREEAVREIRFRVEQLTGLTCSAGIASNFMLAKICSDLNKPNGQYVLENDKNAI 304
Query: 133 MTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLG 192
M F+ LPIRK+GGIG+V E L+ I T +M K +L F+ + + FL LG
Sbjct: 305 MEFLKDLPIRKVGGIGRVCEAQLK-AMDIQTVGDMNLKKNLYPLCFTPLSQESFLRTALG 363
Query: 193 LGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGL-RGRTLTLKL 251
L + RKSIS ERTFS T D +L + EI ML D++K G+ G+T+TLKL
Sbjct: 364 LPGRPSESDPRRKSISVERTFSPTSDFNILLEEHQEICRMLEEDVRKSGIVGGKTVTLKL 423
Query: 252 KTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQ--FNEDKVRAP 309
K +SF+V TR++T + S EDI K + LL+ E +RL+G+R++Q F ED+ +
Sbjct: 424 KLSSFDVLTRSLTPSDVVKSLEDIQKFSLELLEKEKGKEIRLLGVRLSQLIFEEDEKKR- 482
Query: 310 SDPTQKTLTNFMTSGHASKKIVGDQNSLGSD 340
KT+T F ++K + QN GS+
Sbjct: 483 ----SKTITEFW-----NEKKLQIQNLQGSE 504
>sp|P58965|DPO4_THETN DNA polymerase IV OS=Thermoanaerobacter tengcongensis (strain DSM
15242 / JCM 11007 / NBRC 100824 / MB4) GN=dinB PE=3 SV=1
Length = 384
Score = 169 bits (429), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 108/298 (36%), Positives = 172/298 (57%), Gaps = 11/298 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++G+ +AMP ++A+KLCP+ IF+P +Y S+ ++ P S+DEAYL
Sbjct: 48 ARKYGIHSAMPMYMAKKLCPQGIFLPVRRKRYEEVSEQIFRILYDITPFVEPVSIDEAYL 107
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T V + + +IA E++ V + GLT S G++ N+ LAK+ SD NKP+G V+
Sbjct: 108 DVTHVDK----NPEDIALEIKKRVKDATGLTVSVGISYNKFLAKLASDWNKPDGLMVITE 163
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHSTADFF 186
D V + LP+ K+ GIG+ + LR + GI T E++L+ L +F + + +
Sbjct: 164 D--MVPEILKPLPVTKVHGIGEKSAEKLRSI-GIETVEDLLKLPQENLIELFGKTGVEIY 220
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
+ G+ R KSI E+T T++K LL + L E +E++S ++ KE L R
Sbjct: 221 NRIR-GIDERPVETMREIKSIGKEKTLEKDTKNKELLIQHLKEFSEIVSEELIKERLYCR 279
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHA-SVLLKAELPVSLRLIGLRVTQFN 302
T+T+K+KTA F V T++ T+ KYI SEDI + A +L + +L +RLIGL V+ +
Sbjct: 280 TVTVKIKTADFAVHTKSKTVDKYIRFSEDIYEVAKGILEEWKLEQYVRLIGLSVSNLS 337
>sp|Q5FSM8|DPO4_GLUOX DNA polymerase IV OS=Gluconobacter oxydans (strain 621H) GN=dinB
PE=3 SV=1
Length = 356
Score = 168 bits (426), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 109/299 (36%), Positives = 160/299 (53%), Gaps = 9/299 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFGVR+AMP A++LCPEL+FVP F Y S +F +Y P SLDEAYL
Sbjct: 49 ARRFGVRSAMPSVTAKRLCPELLFVPARFDVYRSVSAQIHDIFSRYTPLIQPLSLDEAYL 108
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T+ G S +A+ +R ++ E GLT SAGV+ NR LAK+ SD KP+G FV+
Sbjct: 109 DLTDHLGAYG-SATLVADRIRADIHAETGLTASAGVSYNRFLAKLASDYRKPDGLFVI-T 166
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
M F+++LP+ GIG +R GI T ++ ++ A F+
Sbjct: 167 PAMGP-EFVAALPVDAFHGIGPAMARKMR-ALGIETGADLRERDIETLTRHFGKAATFYY 224
Query: 188 SVGLGLGSTNTPQARFRKSISSERTF--SVTEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
+ G+ R RKS+ +E+T+ +T + A ++ L +IA L Q+ L+ R
Sbjct: 225 GISRGIDHRPVVVNRERKSLGTEQTYLRDLTSE-ADAHQALTQIAATLWGSAQRRQLQAR 283
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFN 302
T+TLK+K A F TRA TL + S E +L+ L+ P +RL+GL ++ F+
Sbjct: 284 TVTLKVKYADFRQITRARTLSAPVPSEEVLLETGQSLMAPLFPFVPGVRLLGLTLSGFH 342
>sp|Q8UJK7|DPO42_AGRT5 DNA polymerase IV 2 OS=Agrobacterium tumefaciens (strain C58 / ATCC
33970) GN=dinB2 PE=3 SV=2
Length = 357
Score = 168 bits (426), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 108/302 (35%), Positives = 162/302 (53%), Gaps = 9/302 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FGVR+AMP A + CP+LIFVP F Y S R +F +Y SLDEAYL
Sbjct: 47 AREFGVRSAMPSVTAARRCPDLIFVPPRFDVYKAVSQQIRAIFAEYTRLIEPLSLDEAYL 106
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-P 126
D+TE + I+ EIA E+R + + GL SAG++ N+ LAK+ SD+NKPNGQ V+ P
Sbjct: 107 DVTENLKGMEIA-TEIASEIRERIKQITGLNASAGISYNKFLAKMASDLNKPNGQAVITP 165
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFF 186
+ A F+ L ++K G+G T + FGI T ++ K A + +F
Sbjct: 166 KNGPA---FVEQLAVKKFHGVGPATAEKMHR-FGIETGADLKSKSLQFLAEHFGKSGAYF 221
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGR 245
+ G+ R RKS+ +E TFSV D L +L +AE + + + + G+
Sbjct: 222 YGIARGIDERQVRPDRIRKSVGAEDTFSVDINDLDLATAELRPLAEKVWHHCEAQRVSGK 281
Query: 246 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFNE 303
T+T+K+K + F TR+ T ++ ++IL+ AS LL P S+RL+G+ ++
Sbjct: 282 TVTVKVKYSDFTQATRSRTSALPVNGIQEILEAASALLATVYPFRRSVRLLGVTLSSLTN 341
Query: 304 DK 305
D+
Sbjct: 342 DQ 343
>sp|B4SIF5|DPO4_STRM5 DNA polymerase IV OS=Stenotrophomonas maltophilia (strain R551-3)
GN=dinB PE=3 SV=1
Length = 356
Score = 165 bits (418), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 116/306 (37%), Positives = 166/306 (54%), Gaps = 21/306 (6%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FGVR+AMP A +LCP+ IFVP DF +Y S R++F ++ SLDEAYL
Sbjct: 50 ARVFGVRSAMPAVRAERLCPDAIFVPPDFARYKAVSQQVREIFLRHTDLVEPLSLDEAYL 109
Query: 68 DITEVCRERGISGIE----IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF 123
D+TE SG+E IA +R + EE LT SAG+APN+ LAK+ SD KP+GQF
Sbjct: 110 DVTEPK-----SGMELATDIARTIRAQIREETQLTASAGIAPNKFLAKIASDWRKPDGQF 164
Query: 124 VLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTA 183
V+P R V F+ LP+ ++ G+GKV E L GI TC ++ Q + S
Sbjct: 165 VIPPQR--VDAFLLPLPVNRVPGVGKVMEGKL-AARGIVTCGDLRQWALIDLEEAFGSFG 221
Query: 184 DFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEG 241
+ G+ + +SISSE TF+ ED L L + ++AE +K
Sbjct: 222 RSLYNRARGVDERPVEPDQQVQSISSEDTFA--EDLPLEDLGEAIVQLAEKTWNATRKTE 279
Query: 242 LRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKA--ELPVS--LRLIGLR 297
G T+ LKLKTA F + TR+ T ++ S E+ L+ ++ L+A +LP RL+G+
Sbjct: 280 RVGHTVVLKLKTAQFRILTRSFTPERPPESMEE-LRDIALALRARVDLPADTRYRLVGVG 338
Query: 298 VTQFNE 303
++ F +
Sbjct: 339 LSGFRD 344
>sp|B2FLR2|DPO4_STRMK DNA polymerase IV OS=Stenotrophomonas maltophilia (strain K279a)
GN=dinB PE=3 SV=1
Length = 364
Score = 164 bits (416), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 116/306 (37%), Positives = 164/306 (53%), Gaps = 21/306 (6%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FGVR+AMP A +LCP+ IFVP DF +Y S R +F ++ SLDEAYL
Sbjct: 50 ARVFGVRSAMPAVRAERLCPDAIFVPPDFARYKAVSQQVRAIFLRHTDLVEPLSLDEAYL 109
Query: 68 DITEVCRERGISGIE----IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF 123
D++E SGIE IA +R + EE LT SAG+APN+ LAK+ SD KP+GQF
Sbjct: 110 DVSEPK-----SGIELATDIARTIRAQIREETNLTASAGIAPNKFLAKIASDWRKPDGQF 164
Query: 124 VLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTA 183
V+P R V F++ LP+ ++ G+GKV E L GI TC ++ Q + S
Sbjct: 165 VIPPQR--VDAFLAPLPVNRVPGVGKVMEGKL-AARGIVTCGDLRQWALIDLEEAFGSFG 221
Query: 184 DFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEG 241
+ G+ + +SISSE TF+ ED L L + ++A +K
Sbjct: 222 RSLYNRARGIDERPVEPDQQVQSISSEDTFA--EDLLLEDLTEAIVQLAGKTWNATRKTE 279
Query: 242 LRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKA--ELPVS--LRLIGLR 297
G T+ LKLKTA F + TR+ T ++ S E+ L+ ++ L+A +LP RL+G+
Sbjct: 280 RIGHTVVLKLKTAQFRILTRSFTPERPPESMEE-LRDIALALRARVDLPAETRYRLVGVG 338
Query: 298 VTQFNE 303
+ F E
Sbjct: 339 LGGFRE 344
>sp|Q8PCW8|DPO4_XANCP DNA polymerase IV OS=Xanthomonas campestris pv. campestris (strain
ATCC 33913 / NCPPB 528 / LMG 568) GN=dinB PE=3 SV=1
Length = 359
Score = 161 bits (407), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 115/308 (37%), Positives = 173/308 (56%), Gaps = 15/308 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FG+R+AMP A +LCP+ +FVP DF +Y S R++F ++ SLDEAYL
Sbjct: 47 ARTFGIRSAMPAVRAERLCPDAVFVPPDFARYKAVSRQVREIFHRHTDLVEPLSLDEAYL 106
Query: 68 DITEVCRERGIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP 126
D+TE + G+ EIA+ +RT + EE LT SAG+APN+ LAK+ SD KP+GQFV+
Sbjct: 107 DVTEA--KTGMQLATEIAQLIRTQIREETQLTASAGIAPNKFLAKIASDWRKPDGQFVIA 164
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM-LQKGSLLCAVFSHSTADF 185
R V F+ LP+ +I G+GKV + L GI T ++ L+ L A F S
Sbjct: 165 PSR--VDAFLLPLPVNRIPGVGKVMDGKL-AALGIVTVSDLRLRPLEELQAHFG-SFGQS 220
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLR 243
G+ + +S+SSE TFS ED AL L + +AE ++
Sbjct: 221 LYRRARGIDERPVEPDQEVQSVSSEDTFS--EDLALDALDPHIQRLAEKTWHATRRTERI 278
Query: 244 GRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELP--VSLRLIGLRVTQ 300
GRT+ LKLKT++F + TR+ T ++ +S + ++ A L + ELP RL+G+ ++
Sbjct: 279 GRTVVLKLKTSNFRILTRSYTPEQPPASLQGLVDIALGLTRRVELPPETRYRLVGVGLSG 338
Query: 301 FNEDKVRA 308
F++ +++A
Sbjct: 339 FSDPELQA 346
>sp|Q4UQI2|DPO4_XANC8 DNA polymerase IV OS=Xanthomonas campestris pv. campestris (strain
8004) GN=dinB PE=3 SV=1
Length = 359
Score = 161 bits (407), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 115/308 (37%), Positives = 173/308 (56%), Gaps = 15/308 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FG+R+AMP A +LCP+ +FVP DF +Y S R++F ++ SLDEAYL
Sbjct: 47 ARTFGIRSAMPAVRAERLCPDAVFVPPDFARYKAVSRQVREIFHRHTDLVEPLSLDEAYL 106
Query: 68 DITEVCRERGIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP 126
D+TE + G+ EIA+ +RT + EE LT SAG+APN+ LAK+ SD KP+GQFV+
Sbjct: 107 DVTEA--KTGMQLATEIAQLIRTQIREETQLTASAGIAPNKFLAKIASDWRKPDGQFVIA 164
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM-LQKGSLLCAVFSHSTADF 185
R V F+ LP+ +I G+GKV + L GI T ++ L+ L A F S
Sbjct: 165 PSR--VDAFLLPLPVNRIPGVGKVMDGKL-AALGIVTVSDLRLRPLEELQAHFG-SFGQS 220
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLR 243
G+ + +S+SSE TFS ED AL L + +AE ++
Sbjct: 221 LYRRARGIDERPVEPDQEVQSVSSEDTFS--EDLALDALDPHIQRLAEKTWHATRRTERI 278
Query: 244 GRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELP--VSLRLIGLRVTQ 300
GRT+ LKLKT++F + TR+ T ++ +S + ++ A L + ELP RL+G+ ++
Sbjct: 279 GRTVVLKLKTSNFRILTRSYTPEQPPASLQGLVDIALGLTRRVELPPETRYRLVGVGLSG 338
Query: 301 FNEDKVRA 308
F++ +++A
Sbjct: 339 FSDPELQA 346
>sp|Q9JRG1|DPO4_NEIMA DNA polymerase IV OS=Neisseria meningitidis serogroup A / serotype
4A (strain Z2491) GN=dinB PE=3 SV=1
Length = 352
Score = 159 bits (401), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 104/299 (34%), Positives = 163/299 (54%), Gaps = 17/299 (5%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG+ +AM A++LCP+ ++VP F Y S VF +Y SLDEAYL
Sbjct: 49 ARQFGLHSAMSVATAKRLCPQAVYVPPHFDLYRQVSAQIHAVFRRYTDLIEPLSLDEAYL 108
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T + + E+A+E+R +++ E GLT SAG+APN+ LAK+ SD KPNGQFVLP
Sbjct: 109 DVTRNFKNIPYAS-EVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPP 167
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADF 185
+ VM F+ +LP+ KI G+GKVT ++ + G+ T ++ ++G LL +H
Sbjct: 168 HK--VMAFLETLPLGKIPGVGKVTLKKMQSL-GMQTAGDLRRFERGELL----NHFGRYG 220
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLR 243
+ L G+ P R+ + ++ ED L L +AE L + ++ +
Sbjct: 221 YRLYDLARGTDERPVKAERECLQISTEITLPEDLPLEQAAGHLPHLAEDLWRQITRKNVE 280
Query: 244 GRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV----SLRLIGLRV 298
+++TLKLKT F + TR +T + +L+ A +L+ A +P + RLIG+ V
Sbjct: 281 AQSVTLKLKTYDFRIITRTLTYSSVLPDCTALLQAAQMLM-ARVPPQTEDAFRLIGIGV 338
>sp|Q8PGJ4|DPO4_XANAC DNA polymerase IV OS=Xanthomonas axonopodis pv. citri (strain 306)
GN=dinB PE=3 SV=1
Length = 359
Score = 159 bits (401), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 111/302 (36%), Positives = 164/302 (54%), Gaps = 13/302 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FG+R+AMP A +LCP+ IFVP DFT+Y S R++F ++ SLDEAYL
Sbjct: 47 ARIFGIRSAMPAVRAERLCPDAIFVPPDFTRYKAVSRQVREIFHRHTDLVEPLSLDEAYL 106
Query: 68 DITEVCRERGIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP 126
D+T + G+ E+A+ +RT + EE LT SAG+APN+ LAK+ SD KP+GQFV+
Sbjct: 107 DVTHA--KTGMQLATEVAQLIRTQIREETQLTASAGIAPNKFLAKIASDWRKPDGQFVIA 164
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFF 186
R V F+ L + +I G+GKV + L GI T ++ Q+ S
Sbjct: 165 PSR--VDAFLLPLKVNRIPGVGKVMDGKL-AALGIVTVADLRQRPLEELQAHFGSFGQSL 221
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRG 244
G+ + +S+SSE TFS ED AL L + +AE ++ G
Sbjct: 222 YRRARGIDERPVEPDQEVQSVSSEDTFS--EDLALDALAPHILRLAEKTWLATRRTERIG 279
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELPVS--LRLIGLRVTQF 301
RT+ LKLKT++F + TR+ T ++ +S E + + A L + ELP RL+G+ + F
Sbjct: 280 RTVVLKLKTSNFRILTRSYTPEQPPTSQEALAQIALALTRRVELPAQTRYRLVGVGLGGF 339
Query: 302 NE 303
++
Sbjct: 340 SD 341
>sp|Q92XH8|DPO42_RHIME DNA polymerase IV 2 OS=Rhizobium meliloti (strain 1021) GN=dinB2
PE=3 SV=2
Length = 354
Score = 158 bits (399), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 102/298 (34%), Positives = 156/298 (52%), Gaps = 7/298 (2%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGV +AMP A++ CPELIFVP F Y S + +F +Y P SLDEAYL
Sbjct: 47 ARKFGVHSAMPSVTAKRKCPELIFVPHRFDVYRAVSRQIQAIFAEYTPLVEPLSLDEAYL 106
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+TE R ++ EIAEE+R + E LT SAGV+ N+ LAK+ SD KP+G FV+
Sbjct: 107 DVTENFRGLKLA-TEIAEEIRGRIRAETHLTASAGVSYNKFLAKMASDQRKPDGLFVITP 165
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
F+ +LP++K G+G T ++ + GI T ++ + + +F
Sbjct: 166 KHGP--DFVQALPVKKFHGVGPATAEKMKRL-GIETGADLKSRDLAFLQQHFGKSGPYFY 222
Query: 188 SVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRT 246
+ G+ R RKSI +E TF D L + + + + G+RG+T
Sbjct: 223 WIARGIDERKVKPDRIRKSIGAEDTFREDVHDLETARAGLKPLIDKVWHYCEASGIRGKT 282
Query: 247 LTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFN 302
+TLK+K A F TR+ T+ I+S ++ + A +LL P +RL+G+ ++ +
Sbjct: 283 MTLKVKWADFTQITRSKTIVAPIASVAEMSEIAELLLSPIFPAPKGIRLLGVTLSSLD 340
>sp|Q98NW7|DPO43_RHILO DNA polymerase IV 3 OS=Rhizobium loti (strain MAFF303099) GN=dinB3
PE=3 SV=1
Length = 361
Score = 158 bits (399), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 114/303 (37%), Positives = 164/303 (54%), Gaps = 16/303 (5%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FGVR+AMP A++ CPELIFVP F Y S R VF ++ SLDEAYL
Sbjct: 55 ARAFGVRSAMPSVTAKRKCPELIFVPPRFDVYRAVSAQIRDVFAEHTDLIEPLSLDEAYL 114
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-P 126
D+T+ R S IAE +R + E GLT SAG++ N+ LAK+ SD NKPNGQFV+ P
Sbjct: 115 DVTQ-NRLNISSATTIAEMIRAKILEVTGLTASAGISYNKFLAKMASDQNKPNGQFVITP 173
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADF 185
A F+ +LP+ K G+G T + + GI T ++ ++ S L F S +
Sbjct: 174 RHGPA---FVETLPVNKFHGVGPATAAKM-EALGIETGADLKERSLSFLQQHFGKSGL-W 228
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADM---QKEGL 242
+ + + R RKSI +E TF+ D L LAE+ +++ + +G+
Sbjct: 229 YYQIARAIDERAVDPDRPRKSIGAEDTFAA--DIVDLETSLAELKPLVAKVWGYCEGKGI 286
Query: 243 RGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQ 300
RGRT+TLK+K A F+ TR+ T+ I S D A+ LL + PV +RL+G+ ++
Sbjct: 287 RGRTVTLKIKFADFQQITRSRTVAVPIELS-DFEHLAADLLGSVFPVRKGIRLLGVTLSS 345
Query: 301 FNE 303
+
Sbjct: 346 LGD 348
>sp|Q3BP42|DPO4_XANC5 DNA polymerase IV OS=Xanthomonas campestris pv. vesicatoria (strain
85-10) GN=dinB PE=3 SV=1
Length = 359
Score = 158 bits (399), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 110/302 (36%), Positives = 164/302 (54%), Gaps = 13/302 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FG+R+AMP A +LCP+ IFVP DF +Y S R++F ++ SLDEAYL
Sbjct: 47 ARTFGIRSAMPAVRAERLCPDAIFVPPDFARYKAVSRQVREIFHRHTDLVEPLSLDEAYL 106
Query: 68 DITEVCRERGIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP 126
D+T + G+ E+A+ +RT + EE LT SAG+APN+ LAK+ SD KP+GQFV+
Sbjct: 107 DVTHA--KTGMQLATEVAQLIRTQIREETQLTASAGIAPNKFLAKIASDWRKPDGQFVIA 164
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFF 186
R V F+ L + +I G+GKV + L GI T ++ Q+ S
Sbjct: 165 PSR--VDAFLLPLKVNRIPGVGKVMDGKL-AALGIVTVADLRQRPLEELQAHFGSFGQSL 221
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRG 244
G+ + +S+SSE TFS ED AL L + +AE ++ G
Sbjct: 222 YRRARGIDERPVEPDQEVQSVSSEDTFS--EDLALDALDPHILRLAEKTWLATRRTERIG 279
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELPVS--LRLIGLRVTQF 301
RT+ LKLKT++F + TR+ T ++ +S E + + A L + ELP RL+G+ ++ F
Sbjct: 280 RTVVLKLKTSNFRILTRSYTPEQPPTSQEALAQIALALTRRVELPTQTRYRLVGVGLSGF 339
Query: 302 NE 303
++
Sbjct: 340 SD 341
>sp|Q5F8N2|DPO4_NEIG1 DNA polymerase IV OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA
1090) GN=dinB PE=3 SV=1
Length = 352
Score = 158 bits (399), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 104/299 (34%), Positives = 162/299 (54%), Gaps = 17/299 (5%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG+ +AM ++LCP+ ++VP F Y S VF +Y SLDEAYL
Sbjct: 49 ARQFGLHSAMSVATVKRLCPQAVYVPPHFDLYRQVSAQIHAVFRRYTDLIEPLSLDEAYL 108
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T + +G E+A+E+R +++ E GLT SAG+APN+ LAK+ SD KPNGQFVLP
Sbjct: 109 DVTRNFKNIPYAG-EVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPP 167
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADF 185
+ VM F+ +LP+ KI G GKVT ++ + G+ T ++ ++G LL +H
Sbjct: 168 HK--VMAFLETLPLGKIPGAGKVTLKKMQSL-GMRTAGDLRRFERGELL----NHFGRYG 220
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLR 243
+ L G+ P R+ + ++ ED L L +AE L + ++ +
Sbjct: 221 YRLYDLARGTDEHPVKAERERLQISTEITLPEDLPLGQAAGHLPHLAEDLWRQITRKNVE 280
Query: 244 GRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV----SLRLIGLRV 298
+++TLKLKT F + TR +T + +L+ A +L+ A +P + RLIG+ V
Sbjct: 281 AQSVTLKLKTYDFRIITRTLTYSSVLPDCAALLQAAQMLM-ARVPPQTEDAFRLIGIGV 338
>sp|A1KUQ3|DPO4_NEIMF DNA polymerase IV OS=Neisseria meningitidis serogroup C / serotype
2a (strain ATCC 700532 / FAM18) GN=dinB PE=3 SV=1
Length = 352
Score = 157 bits (397), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 104/299 (34%), Positives = 163/299 (54%), Gaps = 17/299 (5%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG+ +AM A++LCP+ ++VP F Y S VF +Y SLDEAYL
Sbjct: 49 ARQFGLHSAMSVATAKRLCPQAVYVPPHFDLYRQVSAQIHAVFRRYTDLIEPLSLDEAYL 108
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T + + E+A+E+R +++ E GLT SAG+APN+ LAK+ SD KPNGQFVLP
Sbjct: 109 DVTRNFKNIPYAS-EVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPP 167
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADF 185
+ VM F+ +LP+ KI G+GKVT ++ + G+ T ++ ++G LL +H
Sbjct: 168 HK--VMAFLETLPLGKIPGVGKVTLKKMQSL-GMRTAGDLRRFERGELL----NHFGRYG 220
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLR 243
+ L G+ P R+ + ++ ED L L +AE L + ++ +
Sbjct: 221 YRLYDLVRGTDERPVKAERERLQISTEITLPEDLPLEQAAGHLPHLAEDLWRQITRKNVE 280
Query: 244 GRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV----SLRLIGLRV 298
+++TLKLKT F + TR +T + +L+ A +L+ A +P + RLIG+ V
Sbjct: 281 AQSVTLKLKTYDFRIITRTLTYSSVLPDCAALLQAAQMLI-ARVPPQTEDAFRLIGIGV 338
>sp|Q0A4X2|DPO4_ALHEH DNA polymerase IV OS=Alkalilimnicola ehrlichei (strain MLHE-1)
GN=dinB PE=3 SV=1
Length = 355
Score = 157 bits (397), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 101/297 (34%), Positives = 168/297 (56%), Gaps = 12/297 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARR G+ +AMP + A +LCP+ +F+ F Y S + +F +Y P SLDEAYL
Sbjct: 50 ARRHGIHSAMPAWRAARLCPDAVFLRPRFDVYRSISAQIQALFREYTPLVEPLSLDEAYL 109
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+++ C RG S IA E+R ++E+ GLT SAGV+ N+ LAK+ SD++KP+G V+P
Sbjct: 110 DVSD-CPRRGGSATLIAREIRARIHEQTGLTASAGVSCNKFLAKIASDLDKPDGLHVIPP 168
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
++ F+++LP+ KI G+G+ T + + G+ T ++ + L S A F+
Sbjct: 169 EQ--AEAFVAALPVGKIHGVGQATRQRM-ERMGVRTGADLRRLTLLELQRAFGSRARFYY 225
Query: 188 SVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRT 246
+ G R RKS+ +E TF + A + ++A +A+ ++A + + GL GRT
Sbjct: 226 ELARGRDERPVRPRRERKSVGAETTFGEDLNNPAEMLERMAPLADKVAASLHRRGLAGRT 285
Query: 247 LTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK----AELPVSLRLIGLRVT 299
+TLK+K F TR+++ + + S+++I LL+ + PV RL+G+ V+
Sbjct: 286 VTLKVKYHDFRQITRSLS-GRPVQSADEIRARLPALLQDTEAGDRPV--RLLGVTVS 339
>sp|B2UKN1|DPO4_AKKM8 DNA polymerase IV OS=Akkermansia muciniphila (strain ATCC BAA-835)
GN=dinB PE=3 SV=1
Length = 359
Score = 154 bits (389), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 109/304 (35%), Positives = 158/304 (51%), Gaps = 13/304 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
ARRFGVR+AMP A KLCP LIF Y S +F +Y SLDEA+L
Sbjct: 49 ARRFGVRSAMPSMKALKLCPHLIFTRNRMDVYKAVSAQIHAIFHRYTDLVEPLSLDEAFL 108
Query: 68 DITEVCRERGIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP 126
D+TE + GI ++IA ++ + E LT SAGV+ N+ LAK+ SD KP+G F +
Sbjct: 109 DVTE--NKPGIPLAVDIARRIKKEIRRELHLTASAGVSYNKFLAKIASDYRKPDGLFTIH 166
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFF 186
R FI++LPI G+G T +R + N + + L F + A F+
Sbjct: 167 PSRAE--KFIAALPIEAFWGVGHATAERMRALSITNGAQLRARDKDFLVRHFGKTGAIFY 224
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTF--SVTEDKALLYRKLAEIAEMLSADMQKEGLRG 244
+ G+ +R RKS+ E T+ +VT +AL R L +AE L+ + + G RG
Sbjct: 225 -NFARGVDDRPVEPSRMRKSVGCEETYRENVTRAEALEQR-LPLLAEELAGRLARSGFRG 282
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV---SLRLIGLRVTQF 301
TLTLK+K F +TR T+ + ++ E IL A L++ EL + RL+GL V+
Sbjct: 283 NTLTLKVKFPDFVQKTRCATVPEILTEKEGILPLARTLME-ELDSGDRTFRLLGLSVSHP 341
Query: 302 NEDK 305
E++
Sbjct: 342 QEEQ 345
>sp|Q2P7M9|DPO4_XANOM DNA polymerase IV OS=Xanthomonas oryzae pv. oryzae (strain MAFF
311018) GN=dinB PE=3 SV=1
Length = 359
Score = 154 bits (388), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 113/302 (37%), Positives = 165/302 (54%), Gaps = 15/302 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FG+R+AMP A +LCP IFVP DF +Y S R++F ++ SLDEAYL
Sbjct: 47 ARTFGIRSAMPAVRAERLCPNAIFVPPDFVRYKAVSRQVREIFHRHTDLVEPLSLDEAYL 106
Query: 68 DITEVCRERGIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP 126
D+T+ + G+ EIA+ +RT + EE LT SAG+APN+ LAK+ SD KP+GQFV+
Sbjct: 107 DVTQA--KTGMQLATEIAQLIRTQIREETELTASAGIAPNKFLAKIASDWRKPDGQFVIA 164
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM-LQKGSLLCAVFSHSTADF 185
R + F+ L + +I G+GKV + L GI T ++ L+ L A F S
Sbjct: 165 PSR--IDAFLLPLKVNRIPGVGKVMDGKL-AALGIVTVADLRLRPLEELQAHFG-SFGQS 220
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLR 243
G+ + +S+SSE TFS ED AL L + +AE ++
Sbjct: 221 LYRRARGIDERPVEPDQDVQSVSSEDTFS--EDLALDALDTHILRLAEKTWLATRRTERI 278
Query: 244 GRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELPVS--LRLIGLRVTQ 300
GRT+ LKLKT++F + TR+ T ++ S E + + A L + ELP RL+G+ ++
Sbjct: 279 GRTVVLKLKTSNFRILTRSCTPEQPPVSQEALAQIALALTRRVELPAQTRYRLVGVGLSG 338
Query: 301 FN 302
F+
Sbjct: 339 FS 340
>sp|Q6FFG4|DPO4_ACIAD DNA polymerase IV OS=Acinetobacter sp. (strain ADP1) GN=dinB PE=3
SV=1
Length = 351
Score = 153 bits (387), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 102/304 (33%), Positives = 166/304 (54%), Gaps = 19/304 (6%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR +G+R+AMP ARKLCP+LI + +F KY S ++F ++ SLDEAYL
Sbjct: 47 ARVYGLRSAMPMGQARKLCPDLIIIEPNFDKYRAVSHQIHQIFQQHTHIIEPLSLDEAYL 106
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+TE S ++A ++R ++E+ LT SAGVAPN+ LAK+ SD NKPNG V+
Sbjct: 107 DVTENLNNLP-SATDVAIQIRQQIWEQTSLTASAGVAPNKFLAKIASDWNKPNGLCVIKP 165
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHSTADFF 186
+ VM FI +LP++KI G+G+VT+ L+ + + T ++ + ++L F +
Sbjct: 166 HQ--VMQFIQNLPLKKIPGVGRVTQDKLQQL-KLETLGDLQHIEEAVLIQHFGKYGKQLY 222
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAE----IAEMLSADMQKEGL 242
L G+ + R R+ IS E TF D+ L + + +AE + +Q + L
Sbjct: 223 L-YAQGIDHRSVQAERVRQQISKETTF----DQDLYLHECSSYWLMLAEKVWQSLQNKNL 277
Query: 243 RGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSL----RLIGLRV 298
+ R + +KLK F+V + + ++ + S ++ K LL E+ ++L RLIG+ +
Sbjct: 278 QARGVNIKLKNKHFQVFQHSKSFKRALQSLDE-FKSVLALLLQEISLTLDDQYRLIGVGL 336
Query: 299 TQFN 302
Q +
Sbjct: 337 YQLS 340
>sp|Q1JF59|DPO4_STRPD DNA polymerase IV OS=Streptococcus pyogenes serotype M2 (strain
MGAS10270) GN=dinB PE=3 SV=1
Length = 364
Score = 153 bits (387), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 113/316 (35%), Positives = 176/316 (55%), Gaps = 36/316 (11%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++G+ +AM A + CP+ IF+ ++ KY D R++F +Y S+DEAYL
Sbjct: 61 ARKYGIHSAMSSKEAYERCPKAIFISGNYEKYRTVGDQIRRIFKRYTDVVEPMSIDEAYL 120
Query: 68 DITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVL 125
D+T+ + GI S ++IA+ ++ +++E GLTCSAGV+ N+ LAK+ SD KP+G VL
Sbjct: 121 DVTD--NKLGIKSAVKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKPHGLTLVL 178
Query: 126 PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADF 185
D + F++ LPI K G+GK + L D+ GI T +++L AV + D
Sbjct: 179 KED---ALCFLAKLPIEKFHGVGKKSVEKLHDM-GIYTGQDLL-------AVPEMTLIDH 227
Query: 186 FLSVGLGL-----GSTNTP--QARFRKSISSERTFSVTEDKALLYRKL---AEI---AEM 232
F G L G +N+P R RKSI SERT++ LLY++ AEI A+
Sbjct: 228 FGRFGFDLYRKARGISNSPVKSDRIRKSIGSERTYA-----KLLYQETDIKAEISKNAKR 282
Query: 233 LSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVS 290
++A +Q G+T+ LK++ A F T+ VTL + ++ I + A + +E P
Sbjct: 283 VAALLQDHKKLGKTIVLKVRYADFTTLTKRVTLPELTRNAAQIEQVAGDIFDSLSENPAG 342
Query: 291 LRLIGLRVTQFNEDKV 306
+RL+G+ +T EDKV
Sbjct: 343 IRLLGVTMTNL-EDKV 357
>sp|Q8NZI1|DPO4_STRP8 DNA polymerase IV OS=Streptococcus pyogenes serotype M18 (strain
MGAS8232) GN=dinB PE=3 SV=1
Length = 364
Score = 153 bits (386), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 113/316 (35%), Positives = 176/316 (55%), Gaps = 36/316 (11%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++G+ +AM A + CP+ IF+ ++ KY D R++F +Y S+DEAYL
Sbjct: 61 ARKYGIHSAMSSKEAYERCPKAIFISGNYEKYRTVGDQIRRIFKRYTDLVEPMSIDEAYL 120
Query: 68 DITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVL 125
D+T+ + GI S ++IA+ ++ +++E GLTCSAGV+ N+ LAK+ SD KP+G VL
Sbjct: 121 DVTD--NKLGIKSAVKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKPHGLTLVL 178
Query: 126 PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADF 185
D + F++ LPI K G+GK + L D+ GI T +++L AV + D
Sbjct: 179 KED---ALCFLAKLPIEKFHGVGKKSVEKLHDM-GIYTGQDLL-------AVPEMTLIDH 227
Query: 186 FLSVGLGL-----GSTNTP--QARFRKSISSERTFSVTEDKALLYRKL---AEI---AEM 232
F G L G +N+P R RKSI SERT++ LLY++ AEI A+
Sbjct: 228 FGRFGFDLYRKARGISNSPVKSDRIRKSIGSERTYA-----KLLYQETDIKAEISKNAKR 282
Query: 233 LSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVS 290
++A +Q G+T+ LK++ A F T+ VTL + ++ I + A + +E P
Sbjct: 283 VAALLQDHKKLGKTIVLKVRYADFTTLTKRVTLPELTRNAAQIEQVAGDIFDSLSENPAG 342
Query: 291 LRLIGLRVTQFNEDKV 306
+RL+G+ +T EDKV
Sbjct: 343 IRLLGVTMTNL-EDKV 357
>sp|A2RCQ1|DPO4_STRPG DNA polymerase IV OS=Streptococcus pyogenes serotype M5 (strain
Manfredo) GN=dinB PE=3 SV=1
Length = 364
Score = 153 bits (386), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 113/316 (35%), Positives = 176/316 (55%), Gaps = 36/316 (11%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++G+ +AM A + CP+ IF+ ++ KY D R++F +Y S+DEAYL
Sbjct: 61 ARKYGIHSAMSSKEAYERCPKAIFISGNYEKYRTVGDQIRRIFKRYTDLVEPMSIDEAYL 120
Query: 68 DITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVL 125
D+T+ + GI S ++IA+ ++ +++E GLTCSAGV+ N+ LAK+ SD KP+G VL
Sbjct: 121 DVTD--NKLGIKSAVKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKPHGLTLVL 178
Query: 126 PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADF 185
D + F++ LPI K G+GK + L D+ GI T +++L AV + D
Sbjct: 179 KED---ALCFLAKLPIEKFHGVGKKSVEKLHDM-GIYTGQDLL-------AVPEMTLIDH 227
Query: 186 FLSVGLGL-----GSTNTP--QARFRKSISSERTFSVTEDKALLYRKL---AEI---AEM 232
F G L G +N+P R RKSI SERT++ LLY++ AEI A+
Sbjct: 228 FGRFGFDLYRKARGISNSPVKSDRIRKSIGSERTYA-----KLLYQETDIKAEISKNAKR 282
Query: 233 LSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVS 290
++A +Q G+T+ LK++ A F T+ VTL + ++ I + A + +E P
Sbjct: 283 VAALLQDHKKLGKTIVLKVRYADFTTLTKRVTLPELTRNAAQIEQVAGDIFDSLSENPAG 342
Query: 291 LRLIGLRVTQFNEDKV 306
+RL+G+ +T EDKV
Sbjct: 343 IRLLGVTMTNL-EDKV 357
>sp|Q48RJ4|DPO4_STRPM DNA polymerase IV OS=Streptococcus pyogenes serotype M28 (strain
MGAS6180) GN=dinB PE=3 SV=1
Length = 364
Score = 153 bits (386), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 113/316 (35%), Positives = 175/316 (55%), Gaps = 36/316 (11%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++G+ +AM A + CP+ IF+ ++ KY D R++F +Y S+DEAYL
Sbjct: 61 ARKYGIHSAMSSKEAYERCPKAIFISGNYEKYRTVGDQIRRIFKRYTDVVEPMSIDEAYL 120
Query: 68 DITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVL 125
D+T + GI S ++IA+ ++ +++E GLTCSAGV+ N+ LAK+ SD KP+G VL
Sbjct: 121 DVTN--NKLGIKSAVKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKPHGLTLVL 178
Query: 126 PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADF 185
D + F++ LPI K G+GK + L D+ GI T +++L AV + D
Sbjct: 179 KED---ALCFLAKLPIEKFHGVGKKSVEKLHDM-GIYTGQDLL-------AVPEMTLIDH 227
Query: 186 FLSVGLGL-----GSTNTP--QARFRKSISSERTFSVTEDKALLYRKL---AEI---AEM 232
F G L G +N+P R RKSI SERT++ LLY++ AEI A+
Sbjct: 228 FGRFGFDLYRKARGISNSPVKSDRIRKSIGSERTYA-----KLLYQETDIKAEISKNAKR 282
Query: 233 LSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVS 290
++A +Q G+T+ LK++ A F T+ VTL + ++ I + A + +E P
Sbjct: 283 VAALLQDHKKLGKTIVLKVRYADFTTLTKRVTLPELTRNAAQIEQVAGDIFDSLSENPAG 342
Query: 291 LRLIGLRVTQFNEDKV 306
+RL+G+ +T EDKV
Sbjct: 343 IRLLGITMTNL-EDKV 357
>sp|Q5XA48|DPO4_STRP6 DNA polymerase IV OS=Streptococcus pyogenes serotype M6 (strain
ATCC BAA-946 / MGAS10394) GN=dinB PE=3 SV=1
Length = 364
Score = 152 bits (385), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 113/316 (35%), Positives = 175/316 (55%), Gaps = 36/316 (11%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++G+ +AM A + CP+ IF+ ++ KY D R++F +Y S+DEAYL
Sbjct: 61 ARKYGIHSAMSSKEAYERCPKAIFISGNYEKYRTVGDQIRRIFKRYTDVVEPMSIDEAYL 120
Query: 68 DITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVL 125
D+T + GI S ++IA+ ++ +++E GLTCSAGV+ N+ LAK+ SD KP+G VL
Sbjct: 121 DVTN--NKLGIKSAVKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKPHGLTLVL 178
Query: 126 PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADF 185
D + F++ LPI K G+GK + L D+ GI T +++L AV + D
Sbjct: 179 KED---ALCFLAKLPIEKFHGVGKKSVEKLHDM-GIYTGQDLL-------AVPEMTLIDH 227
Query: 186 FLSVGLGL-----GSTNTP--QARFRKSISSERTFSVTEDKALLYRKL---AEI---AEM 232
F G L G +N+P R RKSI SERT++ LLY++ AEI A+
Sbjct: 228 FGRFGFDLYRKARGISNSPVKSDRIRKSIGSERTYA-----KLLYQETDIKAEISKNAKR 282
Query: 233 LSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVS 290
++A +Q G+T+ LK++ A F T+ VTL + ++ I + A + +E P
Sbjct: 283 VAALLQDHKKLGKTIVLKVRYADFTTLTKRVTLPELTRNAAQIEQVAGDIFDSLSENPAG 342
Query: 291 LRLIGLRVTQFNEDKV 306
+RL+G+ +T EDKV
Sbjct: 343 IRLLGVTMTNL-EDKV 357
>sp|Q99Y66|DPO4_STRP1 DNA polymerase IV OS=Streptococcus pyogenes serotype M1 GN=dinB
PE=3 SV=1
Length = 364
Score = 152 bits (383), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 112/316 (35%), Positives = 176/316 (55%), Gaps = 36/316 (11%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++G+ +AM A + CP+ IF+ ++ KY D R++F +Y S+DEAYL
Sbjct: 61 ARKYGIHSAMSSKEAYERCPKAIFISGNYEKYRTVGDQIRRIFKRYTDVVEPMSIDEAYL 120
Query: 68 DITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVL 125
D+T+ + GI S ++IA+ ++ +++E GLTCSAGV+ N+ LAK+ SD KP+G VL
Sbjct: 121 DVTD--NKLGIKSAVKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKPHGLTLVL 178
Query: 126 PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADF 185
D + F++ LPI K G+GK + L D+ GI T +++L AV + D
Sbjct: 179 KED---ALCFLAKLPIEKFHGVGKKSVKKLHDM-GIYTGQDLL-------AVPEMTLIDH 227
Query: 186 FLSVGLGL-----GSTNTPQA--RFRKSISSERTFSVTEDKALLYRKL---AEIA---EM 232
F G L G +N+P R RKSI SERT++ LLY++ AEI+ +
Sbjct: 228 FGRFGFDLYRKARGISNSPVKYDRIRKSIGSERTYA-----KLLYQETDIKAEISKNVKR 282
Query: 233 LSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVS 290
++A +Q G+T+ LK++ A F T+ VTL + ++ I + A + +E P
Sbjct: 283 VAALLQDHKKLGKTIVLKVRYADFTTLTKRVTLPELTRNAAQIEQVAGDIFDSLSENPAG 342
Query: 291 LRLIGLRVTQFNEDKV 306
+RL+G+ +T EDKV
Sbjct: 343 IRLLGVTMTNL-EDKV 357
>sp|Q2A3L2|DPO4_FRATH DNA polymerase IV OS=Francisella tularensis subsp. holarctica
(strain LVS) GN=dinB PE=3 SV=1
Length = 349
Score = 151 bits (382), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 106/297 (35%), Positives = 166/297 (55%), Gaps = 17/297 (5%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR +GVR+AMP IA + CP LI + TDF KY S + R +F + SLDEAYL
Sbjct: 51 AREYGVRSAMPTAIAMQKCPNLILLNTDFAKYKAASAVIRDIFYSFTDKVEPLSLDEAYL 110
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T+V +E S IA+ ++ ++ + GLT SAGVAPN+LLAK+ SDINKPNG +V+
Sbjct: 111 DVTDV-KEYKNSATLIAQAIKQEIFNKTGLTGSAGVAPNKLLAKIASDINKPNGLYVVTP 169
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAV--FSHSTADF 185
+ V +F+ LP++K+ G+GKV++ L+ + G+ TC + LQ+ SL V F +
Sbjct: 170 KQ--VDSFVKDLPVKKLFGVGKVSQEKLKSM-GVETCLD-LQQLSLATLVDKFGKFGSSL 225
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALL---YRKLAEIAEMLSADMQKEGL 242
+ + G+ + R RKS+S E T+ ED L KL + + L++ M +E
Sbjct: 226 Y-NYARGIDNREVNPVRIRKSVSVENTY--LEDLKTLGACLEKLPSLYDKLTSRMTEEHY 282
Query: 243 RGRT-LTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRV 298
+ + +K F +T + K + +++LK+ + L + +RLIG+ V
Sbjct: 283 KSIIGIVVKFTDTKFN-KTSLTRVAKIL--DKEMLKNLIIELHQKRNHPIRLIGIGV 336
>sp|A7NC07|DPO4_FRATF DNA polymerase IV OS=Francisella tularensis subsp. holarctica
(strain FTNF002-00 / FTA) GN=dinB PE=3 SV=1
Length = 349
Score = 151 bits (382), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 106/297 (35%), Positives = 166/297 (55%), Gaps = 17/297 (5%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR +GVR+AMP IA + CP LI + TDF KY S + R +F + SLDEAYL
Sbjct: 51 AREYGVRSAMPTAIAMQKCPNLILLNTDFAKYKAASAVIRDIFYSFTDKVEPLSLDEAYL 110
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T+V +E S IA+ ++ ++ + GLT SAGVAPN+LLAK+ SDINKPNG +V+
Sbjct: 111 DVTDV-KEYKNSATLIAQAIKQEIFNKTGLTGSAGVAPNKLLAKIASDINKPNGLYVVTP 169
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAV--FSHSTADF 185
+ V +F+ LP++K+ G+GKV++ L+ + G+ TC + LQ+ SL V F +
Sbjct: 170 KQ--VDSFVKDLPVKKLFGVGKVSQEKLKSM-GVETCLD-LQQLSLATLVDKFGKFGSSL 225
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALL---YRKLAEIAEMLSADMQKEGL 242
+ + G+ + R RKS+S E T+ ED L KL + + L++ M +E
Sbjct: 226 Y-NYARGIDNREVNPVRIRKSVSVENTY--LEDLKTLGACLEKLPSLYDKLTSRMTEEHY 282
Query: 243 RGRT-LTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRV 298
+ + +K F +T + K + +++LK+ + L + +RLIG+ V
Sbjct: 283 KSIIGIVVKFTDTKFN-KTSLTRVAKIL--DKEMLKNLIIELHQKRNHPIRLIGIGV 336
>sp|B0TZS5|DPO4_FRAP2 DNA polymerase IV OS=Francisella philomiragia subsp. philomiragia
(strain ATCC 25017) GN=dinB PE=3 SV=1
Length = 350
Score = 151 bits (381), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 104/297 (35%), Positives = 165/297 (55%), Gaps = 17/297 (5%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR +GVR+AMP IA + CP LI + TDF KY S + R +F + SLDEAYL
Sbjct: 51 AREYGVRSAMPTAIAMQKCPNLILLNTDFAKYKATSAVIRDIFYSFTDKVEPLSLDEAYL 110
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T+V +E S IA+ ++ ++ + GLT SAGVAPN+LLAK+ SDINKPNG +V+
Sbjct: 111 DVTDV-KEYKNSATLIAQAIKQEIFNKTGLTGSAGVAPNKLLAKIASDINKPNGLYVITP 169
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAV--FSHSTADF 185
++ V +F+ LP++K+ G+GKV++ L+++ + TC + LQ+ SL V F +
Sbjct: 170 EQ--VDSFVKDLPVKKLFGVGKVSQEKLKNM-NVETCLD-LQQLSLATLVDKFGKFGSSL 225
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALL---YRKLAEIAEMLSADMQKEGL 242
+ + G+ + R RKS+S E T+ ED L KL + L++ M +E
Sbjct: 226 Y-NYARGIDNREVNPVRIRKSVSVENTY--LEDLKTLEACLEKLPNLYNKLTSRMTEEHY 282
Query: 243 RGRT-LTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRV 298
+ + +K F +T + K + + +LK+ + L + +RLIG+ +
Sbjct: 283 KSIIGIVVKFTDTKFN-KTSLTRVAKTL--DKKVLKNLIIELHQKQNYHIRLIGIGI 336
>sp|Q0BM23|DPO4_FRATO DNA polymerase IV OS=Francisella tularensis subsp. holarctica
(strain OSU18) GN=dinB PE=3 SV=1
Length = 349
Score = 151 bits (381), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 106/297 (35%), Positives = 166/297 (55%), Gaps = 17/297 (5%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR +GVR+AMP IA + CP LI + TDF KY S + R +F + SLDEAYL
Sbjct: 51 AREYGVRSAMPTAIAMQKCPNLILLNTDFAKYKAASAVIRDIFYYFTDKVEPLSLDEAYL 110
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T+V +E S IA+ ++ ++ + GLT SAGVAPN+LLAK+ SDINKPNG +V+
Sbjct: 111 DVTDV-KEYKNSATLIAQAIKQEIFNKTGLTGSAGVAPNKLLAKIASDINKPNGLYVVTP 169
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAV--FSHSTADF 185
+ V +F+ LP++K+ G+GKV++ L+ + G+ TC + LQ+ SL V F +
Sbjct: 170 KQ--VDSFVKDLPVKKLFGVGKVSQEKLKSM-GVETCLD-LQQLSLATLVDKFGKFGSSL 225
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALL---YRKLAEIAEMLSADMQKEGL 242
+ + G+ + R RKS+S E T+ ED L KL + + L++ M +E
Sbjct: 226 Y-NYARGIDNREVNPVRIRKSVSVENTY--LEDLKTLGACLEKLPSLYDKLTSRMTEEHY 282
Query: 243 RGRT-LTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRV 298
+ + +K F +T + K + +++LK+ + L + +RLIG+ V
Sbjct: 283 KSIIGIVVKFTDTKFN-KTSLTRVAKIL--DKEMLKNLIIELHQKRNHPIRLIGIGV 336
>sp|Q1JK63|DPO4_STRPC DNA polymerase IV OS=Streptococcus pyogenes serotype M12 (strain
MGAS9429) GN=dinB PE=3 SV=1
Length = 364
Score = 150 bits (380), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 112/316 (35%), Positives = 175/316 (55%), Gaps = 36/316 (11%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++G+ +AM A + CP+ IF+ ++ KY + R++F +Y S+DEAYL
Sbjct: 61 ARKYGIHSAMSSKEAYERCPKAIFISGNYEKYRTVGEQIRRIFKRYTDVVEPMSIDEAYL 120
Query: 68 DITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVL 125
D+T + GI S ++IA+ ++ +++E GLTCSAGV+ N+ LAK+ SD KP+G VL
Sbjct: 121 DVTN--NKLGIKSAVKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKPHGLTLVL 178
Query: 126 PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADF 185
D + F++ LPI K G+GK + L D+ GI T +++L AV + D
Sbjct: 179 KED---ALCFLAKLPIEKFHGVGKKSVEKLHDM-GIYTGQDLL-------AVPEMTLIDH 227
Query: 186 FLSVGLGL-----GSTNTP--QARFRKSISSERTFSVTEDKALLYRKL---AEI---AEM 232
F G L G +N+P R RKSI SERT++ LLY++ AEI A+
Sbjct: 228 FGRFGFDLYRKARGISNSPVKSDRIRKSIGSERTYA-----KLLYQETDIKAEISKNAKR 282
Query: 233 LSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVS 290
++A +Q G+T+ LK++ A F T+ VTL + ++ I + A + +E P
Sbjct: 283 VAALLQDHKKLGKTIVLKVRYADFTTLTKRVTLPELTRNAAQIEQVAGDIFDSLSENPAG 342
Query: 291 LRLIGLRVTQFNEDKV 306
+RL+G+ +T EDKV
Sbjct: 343 IRLLGVTMTNL-EDKV 357
>sp|Q1JA16|DPO4_STRPB DNA polymerase IV OS=Streptococcus pyogenes serotype M12 (strain
MGAS2096) GN=dinB PE=3 SV=1
Length = 364
Score = 150 bits (380), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 112/316 (35%), Positives = 175/316 (55%), Gaps = 36/316 (11%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++G+ +AM A + CP+ IF+ ++ KY + R++F +Y S+DEAYL
Sbjct: 61 ARKYGIHSAMSSKEAYERCPKAIFISGNYEKYRTVGEQIRRIFKRYTDVVEPMSIDEAYL 120
Query: 68 DITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVL 125
D+T + GI S ++IA+ ++ +++E GLTCSAGV+ N+ LAK+ SD KP+G VL
Sbjct: 121 DVTN--NKLGIKSAVKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKPHGLTLVL 178
Query: 126 PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADF 185
D + F++ LPI K G+GK + L D+ GI T +++L AV + D
Sbjct: 179 KED---ALCFLAKLPIEKFHGVGKKSVEKLHDM-GIYTGQDLL-------AVPEMTLIDH 227
Query: 186 FLSVGLGL-----GSTNTP--QARFRKSISSERTFSVTEDKALLYRKL---AEI---AEM 232
F G L G +N+P R RKSI SERT++ LLY++ AEI A+
Sbjct: 228 FGRFGFDLYRKARGISNSPVKSDRIRKSIGSERTYA-----KLLYQETDIKAEISKNAKR 282
Query: 233 LSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVS 290
++A +Q G+T+ LK++ A F T+ VTL + ++ I + A + +E P
Sbjct: 283 VAALLQDHKKLGKTIVLKVRYADFTTLTKRVTLPELTRNAAQIEQVAGDIFDSLSENPAG 342
Query: 291 LRLIGLRVTQFNEDKV 306
+RL+G+ +T EDKV
Sbjct: 343 IRLLGVTMTNL-EDKV 357
>sp|A1WY69|DPO4_HALHL DNA polymerase IV OS=Halorhodospira halophila (strain DSM 244 /
SL1) GN=dinB PE=3 SV=1
Length = 356
Score = 150 bits (380), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 106/305 (34%), Positives = 155/305 (50%), Gaps = 12/305 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FG+R+A P AR+ CPE IF+ F +Y S +F + SLDEAYL
Sbjct: 50 ARAFGIRSAQPAAWARRRCPEAIFLRPRFDRYRAISRQIHGIFADFATTIEPLSLDEAYL 109
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T R RG S +A+ +R + EE GLT SAGV+ N+LLAK+ SD KP+G +V+P
Sbjct: 110 DVTGSQRFRG-SATHMAQAIRRRIREETGLTASAGVSYNKLLAKLASDEGKPDGLYVVPP 168
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 187
+ ++++ PIR++ G+G T L + GI ++L VF + A
Sbjct: 169 EDGP--AYVAAQPIRRLHGVGPATAARL-ERLGIRQVGDLLDWELADLHVFLGNRAGTLH 225
Query: 188 SVGLGLGSTNTPQARFRKSISSERTFS-VTEDKALLYRKLAEIAEMLSADMQKEGLRGRT 246
G+ R RKSI +ERTF T D ++++LA + ++ ++ L RT
Sbjct: 226 DAARGIDHRPVRPRRSRKSIGAERTFGDDTRDLGEIHQRLAPLITKVATRLEHHELVART 285
Query: 247 LTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL----KAELPVSL---RLIGLRVT 299
+TLKL+ A FE TR V+ ++ + DI LL PV L L GL+
Sbjct: 286 VTLKLRYADFESITRRVSPPGPVAQAADIEALIPALLAETEAGSRPVRLLGVSLSGLQPK 345
Query: 300 QFNED 304
Q +D
Sbjct: 346 QREQD 350
>sp|Q02WA3|DPO4_LACLS DNA polymerase IV OS=Lactococcus lactis subsp. cremoris (strain
SK11) GN=dinB PE=3 SV=1
Length = 364
Score = 150 bits (379), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 100/309 (32%), Positives = 167/309 (54%), Gaps = 22/309 (7%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FG+ +AM A LCP+ IF+ ++ KYT S R++F +Y N AAS+DEAYL
Sbjct: 61 ARAFGIHSAMSAKEAYDLCPQAIFISGNYEKYTKVSKQVREIFKRYTDNIEAASIDEAYL 120
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLP 126
D+TE + S I+IA+ ++ ++ E GLTCSAGV+ N+ LAK+ SD KP+G ++P
Sbjct: 121 DVTE-NKIGAQSAIKIAKLIQHDIFVELGLTCSAGVSYNKFLAKIASDYEKPHGLTLIMP 179
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADF 185
++ + F++ LP+ K G+GK T L G T ++ + + L F +
Sbjct: 180 DE---ALEFLAKLPVEKFHGVGKATVPKLH-ALGFFTGGDLQKADPVDLAEKFGIYGWEL 235
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLY------RKLAEIAEMLSADMQK 239
F G+ ++ R RKS+ ERT+ LLY +L +I++ +S +++
Sbjct: 236 FQKAN-GIHNSKVKNHRERKSVGKERTYG-----KLLYLPDDIKAELIKISKQVSESLKR 289
Query: 240 EGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK---AELPVSLRLIGL 296
L+G + LKL+ + F T+ ++ + + S EDI + A + + + + +RL+G+
Sbjct: 290 HQLKGNIIILKLRYSDFTTLTKRKSMVENLDSPEDIAEAAQQIFEEIDYDESLGVRLLGV 349
Query: 297 RVTQFNEDK 305
V+ F K
Sbjct: 350 TVSGFGVQK 358
>sp|Q9JYS8|DPO4_NEIMB DNA polymerase IV OS=Neisseria meningitidis serogroup B (strain
MC58) GN=dinB PE=3 SV=1
Length = 318
Score = 150 bits (378), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 94/261 (36%), Positives = 146/261 (55%), Gaps = 12/261 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FG+ +AM A++LCP+ ++VP F Y S VF +Y SLDEAYL
Sbjct: 49 ARQFGLHSAMSVATAKRLCPQAVYVPPHFDLYRQVSAQIHAVFRRYTDLIEPLSLDEAYL 108
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T + +G ++A+E+R +++ E GLT SAG+APN+ LAK+ SD KPNGQFVLP
Sbjct: 109 DVTRNFKNIPYAG-DVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPP 167
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADF 185
+ VM F+ +LP+ KI G+GKVT ++ + G+ T ++ ++G LL +H
Sbjct: 168 HK--VMAFLETLPLGKIPGVGKVTLKKMQSL-GMRTAGDLRRFERGELL----NHFGRYG 220
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLR 243
+ L G+ P R+ + ++ ED L L +AE L + ++ +
Sbjct: 221 YRLYDLVRGTDERPVKAERERLQISTEITLPEDLPLEQAAGHLPHLAEDLWRQITRKNVE 280
Query: 244 GRTLTLKLKTASFEVRTRAVT 264
+++TLKLKT F + TR +T
Sbjct: 281 AQSVTLKLKTYDFRIITRTLT 301
>sp|B8FBE8|DPO4_DESAA DNA polymerase IV OS=Desulfatibacillum alkenivorans (strain AK-01)
GN=dinB PE=3 SV=1
Length = 396
Score = 150 bits (378), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 104/300 (34%), Positives = 160/300 (53%), Gaps = 13/300 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR GVR+AMP ARKLCP +F+P +Y S ++F +Y P SLDEA++
Sbjct: 49 ARALGVRSAMPIVTARKLCPRGVFLPVRRARYQEISRKVFEIFHQYTPLVEPISLDEAFM 108
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T R G SG EIA +R + G+T SAG+A N+L+AK+ SD+ KPNG V+P
Sbjct: 109 DVTSSTRLFG-SGEEIAANIRRQIESSLGITASAGIAKNKLVAKIASDLCKPNGLLVVPA 167
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHSTADFF 186
D+ F+ LPI ++ G+G + + L G+ T ++ + +L A F + +
Sbjct: 168 DQ--TQEFLDPLPISRLWGVGPASRNKLIS-LGVKTIRDVRKLTQEMLSANFGRN-GEVI 223
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFS---VTEDKALLYRKLAEIAEMLSADMQKEGLR 243
+ G+ KSI E TF T ++A Y+ + ++E ++ M+KE
Sbjct: 224 YAFARGMDDRPVEPPGAAKSIGREITFDRNVYTLEEA--YKWMLFLSERVARRMRKEEAT 281
Query: 244 GRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS--LRLIGLRVTQF 301
GRT+ +K+K A F TR+VTL+ +I HA LL+ L S +RL+G+ ++Q
Sbjct: 282 GRTVNIKVKYADFIQVTRSVTLESPTDDPGEIYTHAKKLLQKTLVGSKAVRLLGVTLSQL 341
>sp|B2SH34|DPO4_FRATM DNA polymerase IV OS=Francisella tularensis subsp. mediasiatica
(strain FSC147) GN=dinB PE=3 SV=1
Length = 349
Score = 149 bits (377), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 105/297 (35%), Positives = 165/297 (55%), Gaps = 17/297 (5%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR +GVR+AMP IA + CP LI + TDF KY S + R +F + SLDEAYL
Sbjct: 51 AREYGVRSAMPTAIAMQKCPNLILLNTDFAKYKAASAVIRDIFYSFTDKVEPLSLDEAYL 110
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T+V +E S IA+ ++ ++ + GLT SAGVAPN+LLAK+ SDINKPNG +V+
Sbjct: 111 DVTDV-KEYKNSATLIAQAIKQEIFNKTGLTGSAGVAPNKLLAKIASDINKPNGLYVVTP 169
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAV--FSHSTADF 185
+ V +F+ LP++K+ G+GKV++ L+ G+ TC + LQ+ SL V F +
Sbjct: 170 KQ--VDSFVKDLPVKKLFGVGKVSQEKLKST-GVETCLD-LQQLSLATLVDKFGKFGSSL 225
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALL---YRKLAEIAEMLSADMQKEGL 242
+ + G+ + R RKS+S E T+ ED L KL + + L++ + +E
Sbjct: 226 Y-NYARGIDNREVNPVRIRKSVSVENTY--LEDLKTLGACLEKLPSLYDKLTSRITEEHY 282
Query: 243 RGRT-LTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRV 298
+ + +K F +T + K + +++LK+ + L + +RLIG+ V
Sbjct: 283 KSIIGIVVKFTDTKFN-KTSLTRVAKIL--DKEMLKNLIIELHQKQNHPIRLIGIGV 336
>sp|A2RNH9|DPO4_LACLM DNA polymerase IV OS=Lactococcus lactis subsp. cremoris (strain
MG1363) GN=dinB PE=3 SV=1
Length = 364
Score = 149 bits (377), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 100/309 (32%), Positives = 167/309 (54%), Gaps = 22/309 (7%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR FG+ +AM A LCP+ IF+ ++ KYT S R++F +Y N AAS+DEAYL
Sbjct: 61 ARAFGIHSAMSAKEAYDLCPQAIFISGNYEKYTKVSKQVREIFKRYTDNIEAASIDEAYL 120
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLP 126
D+TE + S I+IA+ ++ ++ E GLTCSAGV+ N+ LAK+ SD KP+G ++P
Sbjct: 121 DVTE-NKIGAQSAIKIAKLIQHDIFVELGLTCSAGVSYNKFLAKIASDYEKPHGLTLIMP 179
Query: 127 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADF 185
++ + F++ LP+ K G+GK T L G T ++ + + L F +
Sbjct: 180 DE---ALEFLAKLPVEKFHGVGKATVPKLH-ALGFFTGGDLQKADPVDLAERFGIYGWEL 235
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLY------RKLAEIAEMLSADMQK 239
F G+ ++ R RKS+ ERT+ LLY +L +I++ +S +++
Sbjct: 236 FQKAN-GIHNSKVKNHRERKSVGKERTYG-----KLLYLPDDIKAELIKISKQVSESLKR 289
Query: 240 EGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK---AELPVSLRLIGL 296
L+G + LKL+ + F T+ ++ + + S EDI + A + + + + +RL+G+
Sbjct: 290 HQLKGNIIILKLRYSDFTTLTKRKSMVENLDSPEDIAEAARQIFEEIDYDESLGVRLLGV 349
Query: 297 RVTQFNEDK 305
V+ F K
Sbjct: 350 TVSGFGVQK 358
>sp|A0Q6K9|DPO4_FRATN DNA polymerase IV OS=Francisella tularensis subsp. novicida (strain
U112) GN=dinB PE=3 SV=1
Length = 349
Score = 149 bits (375), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 94/238 (39%), Positives = 139/238 (58%), Gaps = 13/238 (5%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR +GVR+AMP IA + CP LI + TDF KY S + R +F + SLDEAYL
Sbjct: 51 AREYGVRSAMPTAIAMQKCPNLILLNTDFAKYKAASAVIRDIFYSFTDKVEPLSLDEAYL 110
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
D+T+V +E S IA+ ++ ++ + GLT SAGVAPN+LLAK+ SDINKPNG +V+
Sbjct: 111 DVTDV-KEYKNSATLIAQAIKQEIFNKTGLTGSAGVAPNKLLAKIASDINKPNGLYVITP 169
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL--LCAVFSHSTADF 185
++ V +F+ LP++K+ G+GKV++ L+ + TC + LQ+ SL L F +
Sbjct: 170 EQ--VDSFVKDLPVKKLFGVGKVSQEKLK-TMNVETCLD-LQQLSLATLLDKFGKFGNNL 225
Query: 186 FLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALL---YRKLAEIAEMLSADMQKE 240
+ S G+ + R RKS+S E T+ ED L KL + + L++ M +E
Sbjct: 226 Y-SYARGIDNREVNPVRIRKSVSVENTY--LEDLKTLNACLEKLPSLYDKLTSRMTEE 280
>sp|A0AK80|DPO4_LISW6 DNA polymerase IV OS=Listeria welshimeri serovar 6b (strain ATCC
35897 / DSM 20650 / SLCC5334) GN=dinB PE=3 SV=1
Length = 356
Score = 149 bits (375), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 105/301 (34%), Positives = 161/301 (53%), Gaps = 15/301 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGV +AMP A KLCP IF+ + Y S+ R++F +Y SLDEAYL
Sbjct: 51 ARKFGVHSAMPTRQAAKLCPNGIFIHGNMAHYVEVSNQIREIFSRYTDIIEPLSLDEAYL 110
Query: 68 DITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL- 125
D+TE ++G+ S +A +++ ++Y E GLT SAGV+ N+ +AK+ SD KP G V+
Sbjct: 111 DVTE--NKKGMKSATMVARDIQQTIYHELGLTASAGVSFNKFIAKIASDFKKPAGMTVVA 168
Query: 126 PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTA 183
P + A F+ +P+ K G+GKVT L + GI T ++ + L+ + H
Sbjct: 169 PEEAEA---FLEQIPVTKFYGVGKVTAEKLHRL-GIETGADLKKWSEWDLIRELHKHGYH 224
Query: 184 DFFLSVGLGLGSTNTPQARFRKSISSERTFSVTE-DKALLYRKLAEIAEMLSADMQKEGL 242
+ G N P R RKS+ E TF D +L + L + A+ + A + K
Sbjct: 225 LYRHVRGRSNNIVN-PH-RDRKSVGKETTFEFNVLDSRILEQSLMQFAKKVEARLIKLQK 282
Query: 243 RGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQ 300
G+T+ LKL+ + F T+ +TL +Y + + I + A++LL+ S+RLIGL VT
Sbjct: 283 HGKTVVLKLRYSDFTTITKRLTLNEYTNDANQIYQAAALLLRESYTGQDSIRLIGLTVTN 342
Query: 301 F 301
Sbjct: 343 L 343
>sp|P58964|DPO4_STAAW DNA polymerase IV OS=Staphylococcus aureus (strain MW2) GN=dinB
PE=3 SV=1
Length = 356
Score = 148 bits (374), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 101/301 (33%), Positives = 162/301 (53%), Gaps = 11/301 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++GV +AMP A KLCP FV ++F Y S +F Y SLDEAYL
Sbjct: 50 ARKYGVHSAMPMSQAHKLCPNGYFVTSNFGAYRETSAQIMSIFRSYTDKVEPMSLDEAYL 109
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
DITE+ R + +IA+ +R + E+ LT SAGV+ N+ LAK+ S +NKP+G V+
Sbjct: 110 DITELVRP-DLPASKIAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGMTVI-- 166
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFF 186
D V + +L I G+GK ++ ++ D GI ++ +K L +F +
Sbjct: 167 DYQNVHDILMTLDIGDFPGVGKASKKVMHDN-GIFNGRDLYEKTEFELIRLFGKRGRGLY 225
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRG 244
+ G+ + +R RKS+ +ERTF+ V +D+ +L RK+ E++ + + K
Sbjct: 226 -NKARGIDHSEVKSSRVRKSVGTERTFATDVNDDEEIL-RKVWELSGKTAERLNKLQKSA 283
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRVTQFN 302
+T+T+K+KT FE ++ ++L+ +SS EDI A +L + V +RLIG+ V
Sbjct: 284 KTVTVKIKTYQFETLSKQMSLRDSVSSEEDIYNIAYLLYNDLKDPDVPIRLIGVTVGNLE 343
Query: 303 E 303
+
Sbjct: 344 Q 344
>sp|Q6G838|DPO4_STAAS DNA polymerase IV OS=Staphylococcus aureus (strain MSSA476) GN=dinB
PE=3 SV=1
Length = 356
Score = 148 bits (374), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 101/301 (33%), Positives = 162/301 (53%), Gaps = 11/301 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++GV +AMP A KLCP FV ++F Y S +F Y SLDEAYL
Sbjct: 50 ARKYGVHSAMPMSQAHKLCPNGYFVTSNFGAYRETSAQIMSIFRSYTDKVEPMSLDEAYL 109
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
DITE+ R + +IA+ +R + E+ LT SAGV+ N+ LAK+ S +NKP+G V+
Sbjct: 110 DITELVRP-DLPASKIAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGMTVI-- 166
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFF 186
D V + +L I G+GK ++ ++ D GI ++ +K L +F +
Sbjct: 167 DYQNVHDILMTLDIGDFPGVGKASKKVMHDN-GIFNGRDLYEKTEFELIRLFGKRGRGLY 225
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRG 244
+ G+ + +R RKS+ +ERTF+ V +D+ +L RK+ E++ + + K
Sbjct: 226 -NKARGIDHSEVKSSRVRKSVGTERTFATDVNDDEEIL-RKVWELSGKTAERLNKLQKSA 283
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRVTQFN 302
+T+T+K+KT FE ++ ++L+ +SS EDI A +L + V +RLIG+ V
Sbjct: 284 KTVTVKIKTYQFETLSKQMSLRDSVSSEEDIYNIAYLLYNDLKDPDVPIRLIGVTVGNLE 343
Query: 303 E 303
+
Sbjct: 344 Q 344
>sp|A6QIC3|DPO4_STAAE DNA polymerase IV OS=Staphylococcus aureus (strain Newman) GN=dinB
PE=3 SV=1
Length = 356
Score = 148 bits (374), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 101/301 (33%), Positives = 162/301 (53%), Gaps = 11/301 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++GV +AMP A KLCP FV ++F Y S +F Y SLDEAYL
Sbjct: 50 ARKYGVHSAMPMSQAHKLCPNGYFVTSNFGAYRETSAQIMSIFRSYTDKVEPMSLDEAYL 109
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
DITE+ R + +IA+ +R + E+ LT SAGV+ N+ LAK+ S +NKP+G V+
Sbjct: 110 DITELVRP-DLPASKIAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGMTVI-- 166
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFF 186
D V + +L I G+GK ++ ++ D GI ++ +K L +F +
Sbjct: 167 DYQNVHDILMTLDIGDFPGVGKASKKVMHDN-GIFNGRDLYEKTEFELIRLFGKRGRGLY 225
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRG 244
+ G+ + +R RKS+ +ERTF+ V +D+ +L RK+ E++ + + K
Sbjct: 226 -NKARGIDHSEVKSSRVRKSVGTERTFATDVNDDEEIL-RKVWELSGKTAERLNKLQKSA 283
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRVTQFN 302
+T+T+K+KT FE ++ ++L+ +SS EDI A +L + V +RLIG+ V
Sbjct: 284 KTVTVKIKTYQFETLSKQMSLRDSVSSEEDIYNIAYLLYNDLKDPDVPIRLIGVTVGNLE 343
Query: 303 E 303
+
Sbjct: 344 Q 344
>sp|Q5HEM7|DPO4_STAAC DNA polymerase IV OS=Staphylococcus aureus (strain COL) GN=dinB
PE=3 SV=1
Length = 356
Score = 148 bits (374), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 101/301 (33%), Positives = 162/301 (53%), Gaps = 11/301 (3%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++GV +AMP A KLCP FV ++F Y S +F Y SLDEAYL
Sbjct: 50 ARKYGVHSAMPMSQAHKLCPNGYFVTSNFGAYRETSAQIMSIFRSYTDKVEPMSLDEAYL 109
Query: 68 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127
DITE+ R + +IA+ +R + E+ LT SAGV+ N+ LAK+ S +NKP+G V+
Sbjct: 110 DITELVRP-DLPASKIAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGMTVI-- 166
Query: 128 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFF 186
D V + +L I G+GK ++ ++ D GI ++ +K L +F +
Sbjct: 167 DYQNVHDILMTLDIGDFPGVGKASKKVMHDN-GIFNGRDLYEKTEFELIRLFGKRGRGLY 225
Query: 187 LSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRG 244
+ G+ + +R RKS+ +ERTF+ V +D+ +L RK+ E++ + + K
Sbjct: 226 -NKARGIDHSEVKSSRVRKSVGTERTFATDVNDDEEIL-RKVWELSGKTAERLNKLQKSA 283
Query: 245 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRVTQFN 302
+T+T+K+KT FE ++ ++L+ +SS EDI A +L + V +RLIG+ V
Sbjct: 284 KTVTVKIKTYQFETLSKQMSLRDSVSSEEDIYNIAYLLYNDLKDPDVPIRLIGVTVGNLE 343
Query: 303 E 303
+
Sbjct: 344 Q 344
>sp|Q1J509|DPO4_STRPF DNA polymerase IV OS=Streptococcus pyogenes serotype M4 (strain
MGAS10750) GN=dinB PE=3 SV=1
Length = 364
Score = 148 bits (373), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 111/316 (35%), Positives = 174/316 (55%), Gaps = 36/316 (11%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++G+ +AM A + CP+ IF+ ++ KY D R++F +Y S+DEAY+
Sbjct: 61 ARKYGIHSAMSCKEAYERCPKAIFISGNYEKYRTVGDQIRRIFKRYTDVVEPMSIDEAYV 120
Query: 68 DITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVL 125
D+T + GI S ++IA+ ++ +++E GLTCSAGV+ N+ L K+ SD KP+G VL
Sbjct: 121 DVTN--NKLGIKSAVKIAKLIQHDMWKEVGLTCSAGVSYNKFLGKLASDFEKPHGLTLVL 178
Query: 126 PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADF 185
D + F++ LPI K G+GK + L D+ GI T +++L AV + D
Sbjct: 179 KED---ALCFLAKLPIEKFHGVGKKSVEKLHDM-GIYTGQDLL-------AVPEMTLIDH 227
Query: 186 FLSVGLGL-----GSTNTP--QARFRKSISSERTFSVTEDKALLYRKL---AEI---AEM 232
F G L G +N+P R RKSI SERT++ LLY++ AEI A+
Sbjct: 228 FGRFGFDLYRKARGISNSPVKSDRIRKSIGSERTYA-----KLLYQETDIKAEISKNAKR 282
Query: 233 LSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVS 290
++A +Q G+T+ LK++ A F T+ VTL + ++ I + A + +E P
Sbjct: 283 VAALLQDHKKLGKTIVLKVRYADFTTLTKRVTLPELTRNAAQIEQVAGDIFDSLSENPAG 342
Query: 291 LRLIGLRVTQFNEDKV 306
+RL+G+ +T EDKV
Sbjct: 343 IRLLGVTMTNL-EDKV 357
>sp|C1KWR9|DPO4_LISMC DNA polymerase IV OS=Listeria monocytogenes serotype 4b (strain
CLIP80459) GN=dinB PE=3 SV=1
Length = 356
Score = 148 bits (373), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 105/301 (34%), Positives = 160/301 (53%), Gaps = 15/301 (4%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR+FGV +AMP A KLCP IF+ + Y S+ R++F +Y SLDEAYL
Sbjct: 51 ARKFGVHSAMPTRQAAKLCPNGIFIHGNMAHYVEVSNQIREIFSRYTDIIEPLSLDEAYL 110
Query: 68 DITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVL 125
D+TE ++G+ S +A E++ ++Y+E GLT SAGV+ N+ +AK+ SD KP G V
Sbjct: 111 DVTE--NKKGMKSATMVAREIQQTIYQELGLTASAGVSFNKFIAKIASDFKKPAGITVVT 168
Query: 126 PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTA 183
P + A F+ +P+ K G+GKVT L + GI T ++ + L+ + H
Sbjct: 169 PEEAEA---FLEQIPVTKFYGVGKVTAEKLHRL-GIETGADLKKWSEWDLIRELHKHGYH 224
Query: 184 DFFLSVGLGLGSTNTPQARFRKSISSERTFSVTE-DKALLYRKLAEIAEMLSADMQKEGL 242
+ G N P R RKS+ E TF D +L + L + A+ + + K
Sbjct: 225 LYRHVRGRSNNIVN-PH-RDRKSVGKETTFEFNVLDSRVLEQSLMQFAKKVEERLIKLQK 282
Query: 243 RGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQ 300
G+T+ LKL+ + F T+ +TL +Y + + I + A++LL+ S+RLIGL VT
Sbjct: 283 HGKTVVLKLRYSDFTTITKRLTLNEYTNDASQIYQAAALLLRESYTGQDSIRLIGLTVTN 342
Query: 301 F 301
Sbjct: 343 L 343
>sp|P0DA79|DPO4_STRPQ DNA polymerase IV OS=Streptococcus pyogenes serotype M3 (strain
SSI-1) GN=dinB PE=3 SV=1
Length = 365
Score = 148 bits (373), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 112/316 (35%), Positives = 173/316 (54%), Gaps = 36/316 (11%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++G+ +AM A + CP+ IF+ ++ KY D R++F +Y S+DEAYL
Sbjct: 61 ARKYGIHSAMSSKEAYERCPKAIFISGNYEKYRTVGDQIRRIFKRYTDVVEPMSIDEAYL 120
Query: 68 DITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVL 125
D+T+ + GI S ++IA+ ++ +++E GLTCSAGV+ N+ LAK+ SD KP+G VL
Sbjct: 121 DVTD--NKLGIKSAVKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKPHGLTLVL 178
Query: 126 PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADF 185
D + F++ LPI K G+GK + L D+ GI T +++L AV + D
Sbjct: 179 KED---ALCFLAKLPIEKFHGVGKKSVEKLHDM-GIYTGQDLL-------AVPEMTLIDH 227
Query: 186 FLSVGLGL-----GSTNTP--QARFRKSISSERTFSVTEDKALLYRKL---AEI---AEM 232
F G L G +N+P R RKSI SERT++ LLY++ AEI A+
Sbjct: 228 FGRFGFDLYRKARGISNSPVKSDRIRKSIGSERTYA-----KLLYQETDIKAEISKNAKR 282
Query: 233 LSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKA--ELPVS 290
+ A +Q G+T+ LK++ A F T+ VTL + + I + A + E V
Sbjct: 283 VVALLQDHKKLGKTIVLKVRYADFITLTKRVTLPELTRDAAQIEQVAESIFDTLPEHTVG 342
Query: 291 LRLIGLRVTQFNEDKV 306
+RL+G+ +T EDK+
Sbjct: 343 IRLLGVTMTNL-EDKM 357
>sp|P0DA78|DPO4_STRP3 DNA polymerase IV OS=Streptococcus pyogenes serotype M3 (strain
ATCC BAA-595 / MGAS315) GN=dinB PE=3 SV=1
Length = 365
Score = 148 bits (373), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 112/316 (35%), Positives = 173/316 (54%), Gaps = 36/316 (11%)
Query: 8 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 67
AR++G+ +AM A + CP+ IF+ ++ KY D R++F +Y S+DEAYL
Sbjct: 61 ARKYGIHSAMSSKEAYERCPKAIFISGNYEKYRTVGDQIRRIFKRYTDVVEPMSIDEAYL 120
Query: 68 DITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVL 125
D+T+ + GI S ++IA+ ++ +++E GLTCSAGV+ N+ LAK+ SD KP+G VL
Sbjct: 121 DVTD--NKLGIKSAVKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKPHGLTLVL 178
Query: 126 PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADF 185
D + F++ LPI K G+GK + L D+ GI T +++L AV + D
Sbjct: 179 KED---ALCFLAKLPIEKFHGVGKKSVEKLHDM-GIYTGQDLL-------AVPEMTLIDH 227
Query: 186 FLSVGLGL-----GSTNTP--QARFRKSISSERTFSVTEDKALLYRKL---AEI---AEM 232
F G L G +N+P R RKSI SERT++ LLY++ AEI A+
Sbjct: 228 FGRFGFDLYRKARGISNSPVKSDRIRKSIGSERTYA-----KLLYQETDIKAEISKNAKR 282
Query: 233 LSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKA--ELPVS 290
+ A +Q G+T+ LK++ A F T+ VTL + + I + A + E V
Sbjct: 283 VVALLQDHKKLGKTIVLKVRYADFITLTKRVTLPELTRDAAQIEQVAESIFDTLPEHTVG 342
Query: 291 LRLIGLRVTQFNEDKV 306
+RL+G+ +T EDK+
Sbjct: 343 IRLLGVTMTNL-EDKM 357
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.134 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 194,884,656
Number of Sequences: 539616
Number of extensions: 8272142
Number of successful extensions: 22416
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 243
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 21566
Number of HSP's gapped (non-prelim): 318
length of query: 538
length of database: 191,569,459
effective HSP length: 122
effective length of query: 416
effective length of database: 125,736,307
effective search space: 52306303712
effective search space used: 52306303712
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)