Query 009298
Match_columns 538
No_of_seqs 178 out of 1489
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 23:20:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009298.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009298hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pzp_A DNA polymerase kappa; D 100.0 2.8E-63 9.6E-68 542.0 35.1 303 2-305 126-509 (517)
2 1jx4_A DNA polymerase IV (fami 100.0 1E-62 3.4E-67 515.0 29.6 295 2-304 44-343 (352)
3 3bq0_A POL IV, DBH, DNA polyme 100.0 2.5E-62 8.7E-67 512.3 29.1 293 3-304 45-344 (354)
4 4f4y_A POL IV, DNA polymerase 100.0 5.4E-62 1.9E-66 511.3 30.6 294 3-305 45-345 (362)
5 3gqc_A DNA repair protein REV1 100.0 1.4E-61 4.6E-66 525.5 32.9 301 2-305 180-499 (504)
6 1t94_A Polymerase (DNA directe 100.0 4.3E-62 1.5E-66 527.0 28.7 303 2-305 70-453 (459)
7 4dez_A POL IV 1, DNA polymeras 100.0 8.9E-62 3E-66 508.6 23.0 297 3-305 47-347 (356)
8 3osn_A DNA polymerase IOTA; ho 100.0 1.5E-60 5.1E-65 509.1 32.3 301 2-305 64-417 (420)
9 2aq4_A DNA repair protein REV1 100.0 5.2E-58 1.8E-62 491.9 28.3 299 2-303 97-433 (434)
10 4ecq_A DNA polymerase ETA; tra 100.0 1.2E-57 3.9E-62 489.1 30.7 295 3-303 52-434 (435)
11 3mfi_A DNA polymerase ETA; DNA 100.0 4.2E-57 1.4E-61 493.0 29.0 300 3-305 68-517 (520)
12 1im4_A DBH; DNA polymerase PAL 100.0 1.5E-44 5E-49 354.6 16.3 170 2-175 49-220 (221)
13 1unn_C POL IV, DNA polymerase 99.4 9.2E-13 3.2E-17 115.5 12.0 97 205-304 5-106 (115)
14 2i5o_A DNA polymerase ETA; zin 98.8 3.1E-10 1.1E-14 79.9 -0.1 36 445-483 4-39 (39)
15 1wcn_A Transcription elongatio 95.2 0.014 4.7E-07 46.3 3.6 51 140-191 8-61 (70)
16 3mab_A Uncharacterized protein 94.4 0.046 1.6E-06 45.7 5.0 31 140-171 5-35 (93)
17 3bqs_A Uncharacterized protein 93.9 0.049 1.7E-06 45.5 4.1 31 140-171 5-35 (93)
18 2a1j_A DNA repair endonuclease 93.4 0.092 3.1E-06 40.5 4.6 49 141-191 6-56 (63)
19 1z3e_B DNA-directed RNA polyme 92.3 0.18 6E-06 40.2 5.0 51 136-188 6-59 (73)
20 1z00_B DNA repair endonuclease 92.1 0.13 4.5E-06 42.1 4.1 49 141-191 20-70 (84)
21 3gfk_B DNA-directed RNA polyme 88.7 0.35 1.2E-05 39.1 3.7 51 135-187 12-65 (79)
22 3k4g_A DNA-directed RNA polyme 87.2 1 3.6E-05 36.9 5.7 50 137-188 10-62 (86)
23 1b22_A DNA repair protein RAD5 86.5 0.27 9.4E-06 42.5 2.0 53 138-191 22-79 (114)
24 1ci4_A Protein (barrier-TO-aut 86.3 0.45 1.5E-05 39.1 3.1 33 136-169 15-47 (89)
25 1coo_A RNA polymerase alpha su 85.5 0.65 2.2E-05 39.0 3.7 48 138-187 23-73 (98)
26 1kft_A UVRC, excinuclease ABC 83.0 0.86 2.9E-05 36.1 3.3 49 138-188 23-74 (78)
27 2a1j_B DNA excision repair pro 81.6 1.6 5.5E-05 35.6 4.6 49 140-190 33-84 (91)
28 1z00_A DNA excision repair pro 81.4 1.8 6.3E-05 35.0 4.9 49 140-190 20-71 (89)
29 1vq8_Y 50S ribosomal protein L 79.1 0.39 1.3E-05 46.9 0.0 49 138-187 14-65 (241)
30 1pzn_A RAD51, DNA repair and r 78.2 1.8 6E-05 44.3 4.6 42 138-180 34-76 (349)
31 2nrt_A Uvrabc system protein C 77.2 2.1 7E-05 41.2 4.4 49 139-189 168-218 (220)
32 2i1q_A DNA repair and recombin 74.2 2 6.8E-05 42.9 3.6 52 139-191 3-57 (322)
33 2kz3_A Putative uncharacterize 72.9 4 0.00014 33.1 4.5 43 138-181 3-46 (83)
34 2fmp_A DNA polymerase beta; nu 71.9 2 6.7E-05 43.9 3.0 28 141-169 100-127 (335)
35 3im1_A Protein SNU246, PRE-mRN 71.8 5 0.00017 40.4 6.0 52 139-191 157-211 (328)
36 2va8_A SSO2462, SKI2-type heli 71.7 2.3 7.9E-05 47.3 3.8 48 139-188 657-705 (715)
37 2q0z_X Protein Pro2281; SEC63, 69.7 6.3 0.00021 39.9 6.2 52 139-191 161-215 (339)
38 1gm5_A RECG; helicase, replica 68.7 1.7 6E-05 49.3 1.9 31 139-170 115-145 (780)
39 2bcq_A DNA polymerase lambda; 68.3 2.6 9E-05 43.0 3.0 28 142-170 99-126 (335)
40 2p6r_A Afuhel308 helicase; pro 67.0 4.2 0.00014 45.2 4.5 52 139-191 632-683 (702)
41 2ihm_A POL MU, DNA polymerase 67.0 2.6 8.8E-05 43.5 2.6 28 141-169 104-131 (360)
42 1x2i_A HEF helicase/nuclease; 66.5 4.1 0.00014 31.3 3.2 48 140-189 15-65 (75)
43 2zj8_A DNA helicase, putative 66.2 4.7 0.00016 44.9 4.8 53 138-191 645-700 (720)
44 1jms_A Terminal deoxynucleotid 65.5 2.9 0.0001 43.4 2.7 29 140-169 122-150 (381)
45 2z43_A DNA repair and recombin 64.3 1.4 4.8E-05 44.3 0.0 41 139-180 12-53 (324)
46 2duy_A Competence protein come 57.7 5 0.00017 31.3 2.2 31 141-171 29-59 (75)
47 3tvk_A DGC, diguanylate cyclas 53.6 25 0.00084 32.1 6.5 61 41-104 58-129 (179)
48 3lda_A DNA repair protein RAD5 52.7 10 0.00035 39.5 4.2 46 135-181 77-125 (400)
49 1faq_A RAF-1; transferase, ser 43.9 5.8 0.0002 28.5 0.5 17 443-460 21-37 (52)
50 3c65_A Uvrabc system protein C 43.3 5 0.00017 38.7 0.0 49 138-188 172-222 (226)
51 2bgw_A XPF endonuclease; hydro 41.7 17 0.00058 34.2 3.5 47 141-189 164-213 (219)
52 1ixr_A Holliday junction DNA h 40.9 16 0.00055 34.1 3.1 53 140-192 73-129 (191)
53 3ign_A Diguanylate cyclase; gg 40.3 60 0.0021 28.2 6.8 63 40-105 63-136 (177)
54 1u9l_A Transcription elongatio 40.1 31 0.0011 26.8 4.2 45 145-190 12-59 (70)
55 1v5w_A DMC1, meiotic recombina 38.7 6.5 0.00022 39.8 0.0 42 138-180 23-68 (343)
56 2w9m_A Polymerase X; SAXS, DNA 37.1 17 0.00058 39.6 3.0 29 141-170 99-127 (578)
57 1znf_A 31ST zinc finger from X 33.1 14 0.00047 21.1 0.9 12 451-462 2-13 (27)
58 2lvt_A Zinc finger and BTB dom 38.2 9.7 0.00033 22.4 0.0 25 450-476 2-26 (29)
59 2owo_A DNA ligase; protein-DNA 31.0 40 0.0014 37.5 4.7 53 135-187 442-497 (671)
60 1dgs_A DNA ligase; AMP complex 30.8 38 0.0013 37.6 4.5 50 137-186 439-491 (667)
61 3b0x_A DNA polymerase beta fam 30.8 23 0.00079 38.5 2.8 30 141-170 95-124 (575)
62 3hva_A Protein FIMX; ggdef dig 30.3 84 0.0029 27.1 6.0 61 42-105 70-141 (177)
63 4f92_B U5 small nuclear ribonu 29.6 26 0.0009 43.3 3.2 40 139-179 1557-1597(1724)
64 2kvf_A Zinc finger and BTB dom 29.3 13 0.00044 21.6 0.3 12 450-461 3-14 (28)
65 1cuk_A RUVA protein; DNA repai 29.0 28 0.00095 32.8 2.6 49 140-188 74-126 (203)
66 2kvh_A Zinc finger and BTB dom 28.9 13 0.00046 21.4 0.3 12 450-461 3-14 (27)
67 3j21_V 50S ribosomal protein L 28.7 19 0.00065 27.8 1.2 14 450-463 4-17 (66)
68 3arc_U Photosystem II 12 kDa e 28.6 26 0.00088 29.1 2.0 30 141-171 28-58 (97)
69 1l8d_A DNA double-strand break 28.4 10 0.00035 31.8 -0.5 22 450-471 47-68 (112)
70 1s5l_U Photosystem II 12 kDa e 28.3 29 0.001 30.6 2.4 30 141-171 65-95 (134)
71 2edu_A Kinesin-like protein KI 28.2 32 0.0011 28.1 2.6 31 141-171 42-76 (98)
72 3hvw_A Diguanylate-cyclase (DG 27.0 61 0.0021 28.4 4.5 61 42-105 56-125 (176)
73 1ard_A Yeast transcription fac 26.8 18 0.00061 20.9 0.6 12 450-461 2-13 (29)
74 4rxn_A Rubredoxin; electron tr 26.3 18 0.0006 26.9 0.6 10 449-458 35-44 (54)
75 2lvu_A Zinc finger and BTB dom 32.1 14 0.00048 21.0 0.0 12 450-461 2-13 (26)
76 1klr_A Zinc finger Y-chromosom 25.9 21 0.00073 20.6 0.8 13 450-462 2-14 (30)
77 2kvg_A Zinc finger and BTB dom 25.7 15 0.00052 21.3 0.1 12 450-461 3-14 (27)
78 1paa_A Yeast transcription fac 25.7 22 0.00075 20.7 0.9 12 450-461 2-13 (30)
79 2ihm_A POL MU, DNA polymerase 25.6 63 0.0022 33.0 4.8 53 141-195 63-125 (360)
80 2qt7_A Receptor-type tyrosine- 25.5 1.9E+02 0.0065 23.6 6.6 65 40-106 20-90 (91)
81 2m0f_A Zinc finger and BTB dom 25.4 17 0.00057 21.0 0.2 12 450-461 2-13 (29)
82 3vdp_A Recombination protein R 25.3 22 0.00076 33.7 1.2 16 141-156 28-43 (212)
83 2lvr_A Zinc finger and BTB dom 31.2 15 0.00051 21.5 0.0 12 450-461 3-14 (30)
84 2m0e_A Zinc finger and BTB dom 25.0 26 0.00089 20.0 1.1 13 450-462 2-14 (29)
85 2elr_A Zinc finger protein 406 24.7 23 0.00078 21.8 0.9 12 450-461 9-20 (36)
86 2bcq_A DNA polymerase lambda; 24.7 45 0.0015 33.7 3.5 52 141-195 59-119 (335)
87 4glx_A DNA ligase; inhibitor, 23.8 55 0.0019 35.8 4.1 46 140-186 447-496 (586)
88 1vq8_U 50S ribosomal protein L 23.7 27 0.00091 27.0 1.1 13 451-463 4-16 (66)
89 2elx_A Zinc finger protein 406 23.1 20 0.00067 22.0 0.3 12 450-461 7-18 (35)
90 2m0d_A Zinc finger and BTB dom 22.2 21 0.00071 20.6 0.2 12 450-461 3-14 (30)
91 3idw_A Actin cytoskeleton-regu 22.1 93 0.0032 24.4 4.0 38 139-181 31-68 (72)
92 2elm_A Zinc finger protein 406 22.1 21 0.00072 22.6 0.3 11 450-460 9-19 (37)
93 1srk_A Zinc finger protein ZFP 22.0 21 0.00073 21.9 0.3 12 450-461 7-18 (35)
94 2kfq_A FP1; protein, de novo p 21.9 24 0.00081 21.5 0.5 10 450-459 2-11 (32)
95 1rik_A E6APC1 peptide; E6-bind 21.5 22 0.00076 20.5 0.3 12 450-461 2-13 (29)
96 2elv_A Zinc finger protein 406 21.5 22 0.00076 22.1 0.3 12 450-461 9-20 (36)
97 2elq_A Zinc finger protein 406 21.4 22 0.00076 22.0 0.3 13 450-462 9-21 (36)
98 2od8_B DNA ligase I, mitochond 21.4 28 0.00096 21.1 0.7 17 311-327 4-20 (26)
99 1vdd_A Recombination protein R 21.4 30 0.001 33.2 1.2 16 141-156 14-29 (228)
100 1w25_A Stalked-cell differenti 21.3 1.3E+02 0.0046 30.6 6.4 62 41-105 344-418 (459)
101 2elt_A Zinc finger protein 406 21.1 23 0.00078 21.9 0.3 12 450-461 9-20 (36)
102 2fmp_A DNA polymerase beta; nu 21.0 93 0.0032 31.3 4.9 53 141-195 59-121 (335)
103 3icl_A EAL/ggdef domain protei 20.6 2E+02 0.007 24.4 6.7 65 40-106 54-128 (171)
104 3ung_C CMR2DHD; ferredoxin fol 20.5 28 0.00094 38.6 0.9 12 449-460 266-277 (693)
105 1rim_A E6APC2 peptide; E6-bind 20.0 28 0.00095 21.4 0.5 12 450-461 2-13 (33)
No 1
>3pzp_A DNA polymerase kappa; DNA nucleotidyltransferase, DNA binding nucleotide binding M binding, nucleus; HET: DNA TTD DTP; 3.34A {Homo sapiens}
Probab=100.00 E-value=2.8e-63 Score=542.01 Aligned_cols=303 Identities=50% Similarity=0.808 Sum_probs=287.1
Q ss_pred CccCHHHHHcCCCCCCcHHHHHhhCCCeEEEcCChHHHHHHHHHHHHHHHhcCCCeEeeCccEEEEEcCccc--------
Q 009298 2 RFELLSARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVC-------- 73 (538)
Q Consensus 2 ~~~syeAR~~GVr~GM~l~~A~~LCP~Lvvvp~d~~~Y~~~s~~l~~il~~~sp~Ve~~SiDEafLDlT~~~-------- 73 (538)
.-|||+||++||++|||+++|+++||+|+++|+|++.|+++|++++.||.+|+|.||++|+||+|||||++.
T Consensus 126 ~t~nYeAR~~GVr~gMp~~~Ak~lCP~Lvvv~~d~~~Y~~~S~~v~~il~~ytp~ve~~SiDEafLDvT~~~~~~~~~~~ 205 (517)
T 3pzp_A 126 STSNYHARRFGVRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYLNITKHLEERQNWPE 205 (517)
T ss_dssp EEECHHHHTTTCCTTSCHHHHHHHCTTCEEECCCHHHHHHHHHHHHHHHHTTCTTCBCCSSSEEEEETHHHHHHHTSCCS
T ss_pred EecCHHHHHcCCCCCCcHHHHHHhCCceEEECCCHHHHHHHHHHHHHHHHHcCCcEEEECCceEEEEccccccccccccc
Confidence 358999999999999999999999999999999999999999999999999999999999999999999874
Q ss_pred -------------------------------------------------------------------hhcCCCHHHHHHH
Q 009298 74 -------------------------------------------------------------------RERGISGIEIAEE 86 (538)
Q Consensus 74 -------------------------------------------------------------------~l~g~~~~~la~~ 86 (538)
++||.++.++|++
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfg~~~~~ia~~ 285 (517)
T 3pzp_A 206 DKRRYFIKMGSSVENDNPGKEVNKLSEHERSISPLLFEESPSDVQPPGDPFQVNFEEQNNPQILQNSVVFGTSAQEVVKE 285 (517)
T ss_dssp TTTEEECC--------------------------------------------------------CCEEECCSSHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhcCChHHHHHHH
Confidence 3466568999999
Q ss_pred HHHHHHHHhCCceEEEecCChhHHHHHhcccCCCCeEEecCChHHHHHhhcCCCcccccCCCHHHHHHHHhhcCCCchHH
Q 009298 87 LRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEE 166 (538)
Q Consensus 87 IR~~I~~~~Glt~S~GIA~nk~lAKLAS~~aKP~G~~vl~~~~~~~~~fL~~lPl~~L~GIG~kt~~kL~~~lGI~TlgD 166 (538)
||++|++++|||||+|||+||++||||++.+||||+++++++++++.+||+++||++|||||+++.++|++ +||+||+|
T Consensus 286 IR~~I~~~tGlt~S~GIA~Nk~LAKlAs~~~KP~G~~vl~~~~~~v~~fL~~LPV~kl~GIG~~t~~~L~~-lGI~TigD 364 (517)
T 3pzp_A 286 IRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPNRQAVMDFIKDLPIRKVSGIGKVTEKMLKA-LGIITCTE 364 (517)
T ss_dssp HHHHHHHHHSCCEEEEEESSHHHHHHHHHTTCSSCEEECCSSHHHHHHHHTTCBGGGSTTCCHHHHHHHHH-TTCCBHHH
T ss_pred HHHHHHHHhCCeEEEEEcCCHHHHHHHhCcCCCCCEEEecCChHHHHHHHhcCChhhhccccHHHHHHHHH-hCCCcHHH
Confidence 99999999999999999999999999999999999999998755789999999999999999999999997 99999999
Q ss_pred HHhchHHHHHHcChhHHHHHHHhccCCCCCCCCCCCCCccceeeeccCccCCHHHHHHHHHHHHHHHHHHHHHhCCCccE
Q 009298 167 MLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRT 246 (538)
Q Consensus 167 L~~lp~~L~krFG~~~~~~L~~~a~Gid~~~v~~~~~pKSIs~e~tF~~~~d~e~L~~~L~~Lae~L~~RLr~~gl~~rt 246 (538)
|++++..|.++||...+.++++.|+|++..++.+..++|||+.+++|+.+.+.+++..+|.+|+++|+.||+++++.+++
T Consensus 365 L~~~~~~L~~~fG~~~~~~l~~~a~Gid~~~v~~~~~~KSi~~e~tf~~~~~~e~l~~~l~~La~~l~~rLr~~~~~~~~ 444 (517)
T 3pzp_A 365 LYQQRALLSLLFSETSWHYFLHISLGLGSTHLTRDGERKSMSVERTFSEINKAEEQYSLCQELCSELAQDLQKERLKGRT 444 (517)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHTTCCCCSCCCCCCCCCEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHTTTCCBSC
T ss_pred HHhhHHHHHHHhChHHHHHHHHHHcCCCcccccCCCCCccceeEEEcccccCHHHHHHHHHHHHHHHHHHHHHcCCceeE
Confidence 99998889999999888888899999999999888899999999999888889999999999999999999999999999
Q ss_pred EEEEEEEcCCceeEEEEecCCCCCCHHHHHHHHHHHHHhhC------CCCEEEEEEEecCCCcCc
Q 009298 247 LTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDK 305 (538)
Q Consensus 247 LtL~Lr~~d~~~~srs~~L~~~t~~~~~L~~~a~~LL~~~l------p~~VR~IGV~ls~L~~~~ 305 (538)
|+|++++++|.+.+++++++.||++..+|++++..||++.+ +..||+|||++++|.+..
T Consensus 445 vtlklk~~~f~~~tr~~tl~~~t~~~~~i~~~a~~Ll~~~~~~~~~~~~~iRllGV~~s~l~~~~ 509 (517)
T 3pzp_A 445 VTIKLKNVNFEVKTRASTVSSVVSTAEEIFAIAKELLKTEIDADFPHPLRLRLMGVRISSFPNEE 509 (517)
T ss_dssp EEEEEEETTSCEEEECCCCSSCBCSHHHHHHHHHHHHHHHHHHHTTSCCCEEEEEEEECCCCCCC
T ss_pred EEEEEEecCCceeeEEEeCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCcEEEEEEEecCCcChh
Confidence 99999999999999999999999999999999999999864 346999999999999874
No 2
>1jx4_A DNA polymerase IV (family Y); protein-DNA complex, Y-family, transferase-D complex; HET: DNA MSE ADI; 1.70A {Sulfolobus solfataricus} SCOP: d.240.1.1 e.8.1.7 PDB: 1jxl_A* 1n48_A* 1n56_A* 1ryr_A* 1rys_A* 1s0m_A* 1s0n_A* 1s0o_A* 1s10_A* 1s97_A* 1s9f_A* 2ia6_A* 2ibk_A* 2r8g_A* 2r8h_A* 2r8i_A* 2rdj_A* 3fds_A* 3m9m_B* 3m9n_B* ...
Probab=100.00 E-value=1e-62 Score=515.03 Aligned_cols=295 Identities=25% Similarity=0.393 Sum_probs=281.7
Q ss_pred CccCHHHHHcCCCCCCcHHHHHhhCCCeEEEcCChHHHHHHHHHHHHHHHhcCCCeEeeCccEEEEEcCccchhcCCCHH
Q 009298 2 RFELLSARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 81 (538)
Q Consensus 2 ~~~syeAR~~GVr~GM~l~~A~~LCP~Lvvvp~d~~~Y~~~s~~l~~il~~~sp~Ve~~SiDEafLDlT~~~~l~g~~~~ 81 (538)
..|||+||++||++|||+++|+++||+++++++|++.|+++|+++++++++|+|.||++|+||+|||||++.++|| ++.
T Consensus 44 ~a~syeAr~~GV~~gm~~~~A~~lcP~l~~~~~~~~~Y~~~s~~i~~il~~~tp~ve~~SiDE~~lDvt~~~~~~~-~~~ 122 (352)
T 1jx4_A 44 ATANYEARKFGVKAGIPIVEAKKILPNAVYLPMRKEVYQQVSSRIMNLLREYSEKIEIASIDEAYLDISDKVRDYR-EAY 122 (352)
T ss_dssp EEECHHHHTTTCCTTSBHHHHHHHCTTSEEEECCHHHHHHHHHHHHHHHTTTCSCEEEEETTEEEEECTTTCSSHH-HHH
T ss_pred EECCHHHHHcCCCCCCcHHHHHHHCCCeEEECCCHHHHHHHHHHHHHHHHHhCCCeEEecCceEEEeccCcccccc-cHH
Confidence 3589999999999999999999999999999999999999999999999999999999999999999999999888 899
Q ss_pred HHHHHHHHHHHHHhCCceEEEecCChhHHHHHhcccCCCCeEEecCChHHHHHhhcCCCcccccCCCHHHHHHHHhhcCC
Q 009298 82 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGI 161 (538)
Q Consensus 82 ~la~~IR~~I~~~~Glt~S~GIA~nk~lAKLAS~~aKP~G~~vl~~~~~~~~~fL~~lPl~~L~GIG~kt~~kL~~~lGI 161 (538)
++|++||++|++++|+|||+|||+||++||||++.+||+|+++++++ ++.+||+++||++|||||+++.++|++ +||
T Consensus 123 ~~a~~ir~~i~~~~Gl~~svGia~nk~lAKlAs~~~Kp~g~~~~~~~--~~~~~L~~lpv~~l~GiG~~~~~~L~~-~Gi 199 (352)
T 1jx4_A 123 NLGLEIKNKILEKEKITVTVGISKNKVFAKIAADMAKPNGIKVIDDE--EVKRLIRELDIADVPGIGNITAEKLKK-LGI 199 (352)
T ss_dssp HHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHHHCSSCEEECCHH--HHHHHHHHSBGGGSTTCCHHHHHHHHT-TTC
T ss_pred HHHHHHHHHHHHHHCCcEEEEEcCCHHHHHHHhccCCCCCEEEECHH--HHHHHHHhCCCCcccccCHHHHHHHHH-cCC
Confidence 99999999999999999999999999999999999999999999864 789999999999999999999999997 999
Q ss_pred CchHHHHhch-HHHHHHcChhHHHHHHHhccCCCCCCCCCCCCCccceeeeccCc-cCCHHHHHHHHHHHHHHHHHHHHH
Q 009298 162 NTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQK 239 (538)
Q Consensus 162 ~TlgDL~~lp-~~L~krFG~~~~~~L~~~a~Gid~~~v~~~~~pKSIs~e~tF~~-~~d~e~L~~~L~~Lae~L~~RLr~ 239 (538)
+|++||+++| ..|.++||...+.++|+.++|++..++.+.. +|||+++++|+. +.+.+++..+|.+|+++|+.||++
T Consensus 200 ~t~~dL~~~~~~~L~~~fG~~~g~~l~~~a~G~d~~~v~~~~-~ksi~~~~tf~~~~~~~~~l~~~l~~l~~~l~~rL~~ 278 (352)
T 1jx4_A 200 NKLVDTLSIEFDKLKGMIGEAKAKYLISLARDEYNEPIRTRV-RKSIGRIVTMKRNSRNLEEIKPYLFRAIEESYYKLDK 278 (352)
T ss_dssp CBGGGGGSSCHHHHHHHHCHHHHHHHHHHHTTCCCCCCCCCC-CCEEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHTT
T ss_pred chHHHHHCCCHHHHHHhcChhHHHHHHHHhCCCCCCCccCCC-CceEEeeeecCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999 8999999988678888999999999998888 999999999998 789999999999999999999999
Q ss_pred hCCCccEEEEEEEEcCCceeEEEEecCCCCCCHHHHHHHHHHHHHhhC---CCCEEEEEEEecCCCcC
Q 009298 240 EGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL---PVSLRLIGLRVTQFNED 304 (538)
Q Consensus 240 ~gl~~rtLtL~Lr~~d~~~~srs~~L~~~t~~~~~L~~~a~~LL~~~l---p~~VR~IGV~ls~L~~~ 304 (538)
+ .+++|+|++++++|...+++++++.||++...|++ +..+|++++ +.+||++||++++|.+.
T Consensus 279 ~--~~~~v~l~l~~~~~~~~~~~~~l~~pt~~~~~l~~-a~~ll~~~~~~~~~~vr~lgv~~~~l~~~ 343 (352)
T 1jx4_A 279 R--IPKAIHVVAVTEDLDIVSRGRTFPHGISKETAYSE-SVKLLQKILEEDERKIRRIGVRFSKFIEA 343 (352)
T ss_dssp C--CEEEEEEEEEETTSCEEEEEEECSSCCCHHHHHHH-HHHHHHHHHHHCCSCEEEEEEEEEEEC--
T ss_pred h--cCCEEEEEEEECCCCcceeEEecCCCCCCHHHHHH-HHHHHHHHHhcCCCCEEEEEEEEeCCCCc
Confidence 8 99999999999999999999999999999999999 999999974 57999999999999874
No 3
>3bq0_A POL IV, DBH, DNA polymerase IV; Y-family, lesion bypass; HET: DNA; 2.60A {Sulfolobus acidocaldarius} SCOP: d.240.1.1 e.8.1.7 PDB: 3bq1_A* 3bq2_A* 1k1q_A 1k1s_A
Probab=100.00 E-value=2.5e-62 Score=512.33 Aligned_cols=293 Identities=26% Similarity=0.377 Sum_probs=281.4
Q ss_pred ccCHHHHHcCCCCCCcHHHHHhhCCCeEEEcCChHHHHHHHHHHHHHHHhcCCCeEeeCccEEEEEcCccch-hcCCCHH
Q 009298 3 FELLSARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCR-ERGISGI 81 (538)
Q Consensus 3 ~~syeAR~~GVr~GM~l~~A~~LCP~Lvvvp~d~~~Y~~~s~~l~~il~~~sp~Ve~~SiDEafLDlT~~~~-l~g~~~~ 81 (538)
.|||+||++||++|||+++|+++||+++++++|++.|+++|+++++++++|+|.||++|+||+|||||++.+ +|| ++.
T Consensus 45 a~syeAr~~GV~~gm~~~~A~~lcP~l~~~~~~~~~Y~~~s~~i~~il~~~tp~ve~~SiDE~~lDvt~~~~~~~~-~~~ 123 (354)
T 3bq0_A 45 TANYEARKLGVKAGMPIIKAMQIAPSAIYVPMRKPIYEAFSNRIMNLLNKHADKIEVASIDEAYLDVTNKVEGNFE-NGI 123 (354)
T ss_dssp EECHHHHHTTCCTTCBHHHHHHHCTTCEEEECCHHHHHHHHHHHHHHHHTTCSEEEEEETTEEEEECTTTTTTCHH-HHH
T ss_pred ECCHHHHHhCCCCCCcHHHHHHHCCCeEEECCCHHHHHHHHHHHHHHHHHhCCCEEEecCCeeEEecCcchhhccC-CHH
Confidence 589999999999999999999999999999999999999999999999999999999999999999999998 888 899
Q ss_pred HHHHHHHHHHHHHhCCceEEEecCChhHHHHHhcccCCCCeEEecCChHHHHHhhcCCCcccccCCCHHHHHHHHhhcCC
Q 009298 82 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGI 161 (538)
Q Consensus 82 ~la~~IR~~I~~~~Glt~S~GIA~nk~lAKLAS~~aKP~G~~vl~~~~~~~~~fL~~lPl~~L~GIG~kt~~kL~~~lGI 161 (538)
++|++||++|++++|+|||+|||+||++||||++.+||+|+++++++ ++.+||+++||++|||||+++.++|++ +||
T Consensus 124 ~la~~ir~~i~~~~Gl~~svGia~nk~lAKlAs~~~Kp~g~~~~~~~--~~~~~L~~lpv~~l~GiG~~~~~~L~~-~Gi 200 (354)
T 3bq0_A 124 ELARKIKQEILEKEKITVTVGVAPNKILAKIIADKSKPNGLGVIRPT--EVQDFLNELDIDEIPGIGSVLARRLNE-LGI 200 (354)
T ss_dssp HHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCSSCEEECCGG--GHHHHHHHCBSTTSTTCCHHHHHHHTT-TTC
T ss_pred HHHHHHHHHHHHHHCCcEEeeeccCHHHHHHHhccCCCCCEEEECHH--HHHHHHHhCCcccccCcCHHHHHHHHH-cCC
Confidence 99999999999999999999999999999999999999999999875 789999999999999999999999997 999
Q ss_pred CchHHHHhch-HHHHHHcChhHHHHHHHhccCCCCCCCCCCCCCccceeeeccCc-cCCHHHHHHHHHHHHHHHHHHHHH
Q 009298 162 NTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQK 239 (538)
Q Consensus 162 ~TlgDL~~lp-~~L~krFG~~~~~~L~~~a~Gid~~~v~~~~~pKSIs~e~tF~~-~~d~e~L~~~L~~Lae~L~~RLr~ 239 (538)
+|++||+++| ..|.++||...+.++|+.++|+++.++.+.. +|||+++++|+. +.+.+++..+|.+|+++|+.||++
T Consensus 201 ~t~~dL~~~~~~~L~~~fG~~~g~~l~~~a~G~d~~~v~~~~-~ksi~~~~tf~~~~~~~~~l~~~l~~l~~~l~~rL~~ 279 (354)
T 3bq0_A 201 QKLRDILSKNYNELEKITGKAKALYLLKLAQNKYSEPVENKS-KIPHGRYLTLPYNTRDVKVILPYLKKAINEAYNKVNG 279 (354)
T ss_dssp CBGGGGGGSCHHHHHHHHCHHHHHHHHHHHTTCCCCCCCSEE-CCCEEEEEEEEEEECCHHHHHHHHHHHHHHHHTTTSS
T ss_pred ccHHHHhcCCHHHHHHHHCHHHHHHHHHHhCCCCCCCCcCCC-CceeEEeEeCCCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999998 8999999988678888999999999998888 999999999997 789999999999999999999998
Q ss_pred hCCCccEEEEEEEEcCCceeEEEEecCCCCCCHHHHHHHHHHHHHhhC-C-C-C-EEEEEEEecCCCcC
Q 009298 240 EGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL-P-V-S-LRLIGLRVTQFNED 304 (538)
Q Consensus 240 ~gl~~rtLtL~Lr~~d~~~~srs~~L~~~t~~~~~L~~~a~~LL~~~l-p-~-~-VR~IGV~ls~L~~~ 304 (538)
.+++|+|++++++|...+++++++.||++...|++ +..+|++++ + . + ||++||++++|.+.
T Consensus 280 ---~~~~v~l~~~~~~~~~~~~~~~l~~pt~~~~~i~~-~~~ll~~~~~~~~~~~vr~lgv~~~~l~~~ 344 (354)
T 3bq0_A 280 ---IPMRITVIAIMEDLDILSKGKKFKHGISIDNAYKV-AEDLLRELLVRDKRRNVRRIGVKLDNIIIN 344 (354)
T ss_dssp ---EEEEEEEEEEETTSCEEEEEEECSSCCCHHHHHHH-HHHHHHHHTTSCSSCCEEEEEEEEEEEECC
T ss_pred ---hCCEEEEEEEeCCCCcceEEEECCCccCCHHHHHH-HHHHHHHHhccCCCCceEEEEEEEecCCCC
Confidence 99999999999999999999999999999999999 999999985 3 3 8 99999999999886
No 4
>4f4y_A POL IV, DNA polymerase IV; Y-family polymerase, transferase-DNA complex; HET: DNA DCP; 2.34A {Sulfolobus acidocaldarius} PDB: 3bq0_A* 3bq1_A* 3bq2_A* 4hyk_A* 1k1q_A 1k1s_A
Probab=100.00 E-value=5.4e-62 Score=511.28 Aligned_cols=294 Identities=27% Similarity=0.384 Sum_probs=280.7
Q ss_pred ccCHHHHHcCCCCCCcHHHHHhhCCCeEEEcCChHHHHHHHHHHHHHHHhcCCCeEeeCccEEEEEcCccch-hcCCCHH
Q 009298 3 FELLSARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCR-ERGISGI 81 (538)
Q Consensus 3 ~~syeAR~~GVr~GM~l~~A~~LCP~Lvvvp~d~~~Y~~~s~~l~~il~~~sp~Ve~~SiDEafLDlT~~~~-l~g~~~~ 81 (538)
.|||+||++||++|||+++|+++||+++++++|++.|+++|+++++++.+|+|.||++|+||+|||+|++.+ +|| ++.
T Consensus 45 a~sy~Ar~~GV~~gm~~~~A~~lcP~l~~~~~~~~~Y~~~s~~i~~il~~~tp~ve~~SiDEa~LDvt~~~~~~~~-~~~ 123 (362)
T 4f4y_A 45 TANYEARKLGVKAGMPIIKAMQIAPSAIYVPMRKPIYEAFSNRIMNLLNKHADKIEVASIDEAYLDVTNKVEGNFE-NGI 123 (362)
T ss_dssp EECHHHHHTTCCTTCBHHHHHHHCTTSEEEECCHHHHHHHHHHHHHHHHTTCSEEEEEETTEEEEECTTTTTTCHH-HHH
T ss_pred ECCHHHHHcCCCCCCcHHHHHHHCCCeEEECCCHHHHHHHHHHHHHHHHHhCCCEEEecCceEEEecCCccccccC-CHH
Confidence 589999999999999999999999999999999999999999999999999999999999999999999988 887 799
Q ss_pred HHHHHHHHHHHHHhCCceEEEecCChhHHHHHhcccCCCCeEEecCChHHHHHhhcCCCcccccCCCHHHHHHHHhhcCC
Q 009298 82 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGI 161 (538)
Q Consensus 82 ~la~~IR~~I~~~~Glt~S~GIA~nk~lAKLAS~~aKP~G~~vl~~~~~~~~~fL~~lPl~~L~GIG~kt~~kL~~~lGI 161 (538)
++|++||++|++++|+|||+|||+||++||||++.+||+|+++++++ ++.+||+++||++|||||+++.++|++ +||
T Consensus 124 ~~a~~ir~~I~~~~Gl~~svGIa~nk~lAKlAs~~~Kp~g~~~~~~~--~~~~~L~~lpv~~l~GiG~~~~~~L~~-~GI 200 (362)
T 4f4y_A 124 ELARKIKQEILEKEKITVTVGVAPNKILAKIIADKSKPNGLGVIRPT--EVQDFLNELDIDEIPGIGSVLARRLNE-LGI 200 (362)
T ss_dssp HHHHHHHHHHHHHHCCCCEEEEESSHHHHHHHHHTSCSSCEEECCTT--THHHHHHTCBSTTSTTCCSTTHHHHHH-TTC
T ss_pred HHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhcccCCCEEEECHH--HHHHHHHhCChhhccCCCHHHHHHHHH-cCC
Confidence 99999999999999999999999999999999999999999999876 689999999999999999999999997 999
Q ss_pred CchHHHHhch-HHHHHHcChhHHHHHHHhccCCCCCCCCCCCCCccceeeeccCc-cCCHHHHHHHHHHHHHHHHHHHHH
Q 009298 162 NTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQK 239 (538)
Q Consensus 162 ~TlgDL~~lp-~~L~krFG~~~~~~L~~~a~Gid~~~v~~~~~pKSIs~e~tF~~-~~d~e~L~~~L~~Lae~L~~RLr~ 239 (538)
+|++||+++| ..|.++||...+.+++..++|+++.++.+..+ |||+.+++|+. +.+.+++..+|.+|+++|+.||++
T Consensus 201 ~Ti~dL~~~~~~~L~~~fG~~~g~~l~~~a~G~d~~~v~~~~~-ksi~~~~tf~~~~~~~~~l~~~l~~l~~~l~~rLr~ 279 (362)
T 4f4y_A 201 QKLRDILSKNYNELEKITGKAKALYLLKLAQDEYNEPIRTRVR-KSIGRYLTLPYNTRDVKVILPYLKKAINEAYNKVNG 279 (362)
T ss_dssp CBGGGGTTSCHHHHHHHHCHHHHHHHHHHHTTCCCCCCCCCCC-CEEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHCSS
T ss_pred ChHHHHhcCCHHHHHHHhChHHHHHHHHHhcCCCCCcCccCCC-cceEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999 89999999766888989999999999988877 99999999998 789999999999999999999998
Q ss_pred hCCCccEEEEEEEEcCCceeEEEEecCCCCCCHHHHHHHHHHHHHhhC---CCC-EEEEEEEecCCCcCc
Q 009298 240 EGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL---PVS-LRLIGLRVTQFNEDK 305 (538)
Q Consensus 240 ~gl~~rtLtL~Lr~~d~~~~srs~~L~~~t~~~~~L~~~a~~LL~~~l---p~~-VR~IGV~ls~L~~~~ 305 (538)
.+++|+|++++++|...+++++++.| ++...|++.+..+|++++ +.+ ||++||++++|.+..
T Consensus 280 ---~~~~v~l~i~~~~~~~~t~s~~l~~p-~d~~~i~~~a~~ll~~~~~~~~~~~vr~lGV~~~~L~~~~ 345 (362)
T 4f4y_A 280 ---IPMRITVIAIMEDLDILSKGKKFKHG-ISIDNAYKVAEDLLRELLVRDKRRNVRRIGVKLDNIIINK 345 (362)
T ss_dssp ---EEEEEEEEEEETTSCEEEEEEECSSC-CCHHHHHHHHHHHHHHHTTSSCSCCEEEEEEEEEEEEC--
T ss_pred ---CCCEEEEEEEECCCcEEEEEEECCCC-CCHHHHHHHHHHHHHHHHhhcCCccEEEEEEEEeccccCC
Confidence 99999999999999999999999999 999999999999999987 367 999999999999763
No 5
>3gqc_A DNA repair protein REV1; protein-DNA complex, DNA damage, DNA repair, DNA synthesis, binding, magnesium, metal-binding; HET: DNA DOC DCP; 2.50A {Homo sapiens}
Probab=100.00 E-value=1.4e-61 Score=525.50 Aligned_cols=301 Identities=27% Similarity=0.398 Sum_probs=285.9
Q ss_pred CccCHHHHHcCCCCCCcHHHHHhhCCCeEEEcCChHHHHHHHHHHHHHHHhcCCCeEeeCccEEEEEcCccchhcCCCHH
Q 009298 2 RFELLSARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 81 (538)
Q Consensus 2 ~~~syeAR~~GVr~GM~l~~A~~LCP~Lvvvp~d~~~Y~~~s~~l~~il~~~sp~Ve~~SiDEafLDlT~~~~l~g~~~~ 81 (538)
..|||+||++||++|||+++|++|||+++++|+|++.|+++|+++++++.+|+|.||++||||+|||||++.++||.++.
T Consensus 180 ~aaSyeAR~~GVrsGMp~~~A~~lcP~livv~~d~~~Y~~~S~~i~~il~~~tp~VE~~SiDEafLDvtg~~~l~g~~~~ 259 (504)
T 3gqc_A 180 ASCSYEARQLGIKNGMFFGHAKQLCPNLQAVPYDFHAYKEVAQTLYETLASYTHNIEAVSCDEALVDITEILAETKLTPD 259 (504)
T ss_dssp SEECHHHHTTTCCTTCBHHHHHHHCTTCEEECCCHHHHHHHHHHHHHHHHTTCSCEEEEETTEEEEECHHHHHHHCCCHH
T ss_pred EECCHHHHHcCCCCCCcHHHHHHhCCCcEEECCCHHHHHHHHHHHHHHHHHhCCeEEEecCCeEEEeccchHhhcCCCHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999998876799
Q ss_pred HHHHHHHHHHHHHhCCceEEEecCChhHHHHHhcccCCCCeEEecCChHHHHHhhcCCCcccccCCCHHHHHHHHhhcCC
Q 009298 82 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGI 161 (538)
Q Consensus 82 ~la~~IR~~I~~~~Glt~S~GIA~nk~lAKLAS~~aKP~G~~vl~~~~~~~~~fL~~lPl~~L~GIG~kt~~kL~~~lGI 161 (538)
++|++||++|++++|++||+|||+||++||||++.+||+|+++++++ ++.+||+++||++|||||+++.++|++ +||
T Consensus 260 ~la~~Ir~~I~~~tGlt~SvGIa~nk~LAKlAs~~~KP~G~~vl~~~--~~~~~L~~LPV~~l~GIG~~t~~kL~~-lGI 336 (504)
T 3gqc_A 260 EFANAVRMEIKDQTKCAASVGIGSNILLARMATRKAKPDGQYHLKPE--EVDDFIRGQLVTNLPGVGHSMESKLAS-LGI 336 (504)
T ss_dssp HHHHHHHHHHHHHHSCCEEEEEESSHHHHHHHHHHHCSSCEEECCGG--GHHHHHHHSBGGGSTTCCHHHHHHHHH-TTC
T ss_pred HHHHHHHHHHHHHhCCcEEEEEeCCHHHHHHHHhhCccCCEEEECHH--HHHHHHhcCChhHhhCcCHHHHHHHHH-cCC
Confidence 99999999999999999999999999999999999999999999876 689999999999999999999999997 999
Q ss_pred CchHHHHhch-HHHHHHcChhHHHHHHHhccCCCCCCCCCCCCCccceeeeccCc-cCCHHHHHHHHHHHHHHHHHHHHH
Q 009298 162 NTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQK 239 (538)
Q Consensus 162 ~TlgDL~~lp-~~L~krFG~~~~~~L~~~a~Gid~~~v~~~~~pKSIs~e~tF~~-~~d~e~L~~~L~~Lae~L~~RLr~ 239 (538)
+|++||+++| ..|.++||...+.+||..|+|+|+.++.+..++|||+.+++|+. +.+.+++..+|.+|+++|+.||++
T Consensus 337 ~TigDLa~~~~~~L~~~fG~~~g~~L~~~a~GiD~~pV~~~~~~KSi~~e~tf~~d~~~~~~l~~~L~~La~~l~~rLr~ 416 (504)
T 3gqc_A 337 KTCGDLQYMTMAKLQKEFGPKTGQMLYRFCRGLDDRPVRTEKERKSVSAEINYGIRFTQPKEAEAFLLSLSEEIQRRLEA 416 (504)
T ss_dssp CBHHHHTTSCHHHHHHHHCHHHHHHHHHHTTTCCCCCCCCCCCCCCEEEEECSSCCCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHhccHHHHHHhhChhHHHHHHHHhcCCCccccccccCCcceeeeeccCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998 89999999888899999999999999988888999999999998 789999999999999999999999
Q ss_pred hCCCccEEEEEEEEcC---------C------ceeEEEEecCCCCCCHHHHHHHHHHHHHhhC-C-CCEEEEEEEecCCC
Q 009298 240 EGLRGRTLTLKLKTAS---------F------EVRTRAVTLQKYISSSEDILKHASVLLKAEL-P-VSLRLIGLRVTQFN 302 (538)
Q Consensus 240 ~gl~~rtLtL~Lr~~d---------~------~~~srs~~L~~~t~~~~~L~~~a~~LL~~~l-p-~~VR~IGV~ls~L~ 302 (538)
+++.+++|+|++++++ | .+.+++++++.||++..+|++.+..||++++ + .+||+|||++++|.
T Consensus 417 ~~~~~~~vtLkl~~r~~d~~~~t~~f~~~g~~~~~trs~tL~~pT~d~~~I~~~A~~Ll~~~~~~~~~vRllGV~~s~L~ 496 (504)
T 3gqc_A 417 TGMKGKRLTLKIMVRKPGAPVETAKFGGHGICDNIARTVTLDQATDNAKIIGKAMLNMFHTMKLNISDMRGVGIHVNQLV 496 (504)
T ss_dssp TTEEEEEEEEEEEEECTTSCSBCSSTTCCCSEEEEEEEEEEEEEECCHHHHHHHHHHHHHTSCCCGGGEEEEEEEEEEEE
T ss_pred cCCceeEEEEEEEEecccccccccccccCCCcccceeEeecCCCcCCHHHHHHHHHHHHHHhcCCCCCeEEEEEEEcCcc
Confidence 9999999999998642 3 4678999999999999999999999999985 3 68999999999999
Q ss_pred cCc
Q 009298 303 EDK 305 (538)
Q Consensus 303 ~~~ 305 (538)
+..
T Consensus 497 ~~~ 499 (504)
T 3gqc_A 497 PTN 499 (504)
T ss_dssp ECC
T ss_pred cCC
Confidence 874
No 6
>1t94_A Polymerase (DNA directed) kappa; replication, DNA repair, Y-family DNA polymerase, translesion DNA synthesis, lesion bypass; 2.40A {Homo sapiens} SCOP: d.240.1.1 e.8.1.7 PDB: 2oh2_A* 2w7o_A* 2w7p_A* 3hed_A* 3in5_A*
Probab=100.00 E-value=4.3e-62 Score=527.01 Aligned_cols=303 Identities=50% Similarity=0.816 Sum_probs=272.9
Q ss_pred CccCHHHHHcCCCCCCcHHHHHhhCCCeEEEcCChHHHHHHHHHHHHHHHhcCCCeEeeCccEEEEEcCccchh------
Q 009298 2 RFELLSARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRE------ 75 (538)
Q Consensus 2 ~~~syeAR~~GVr~GM~l~~A~~LCP~Lvvvp~d~~~Y~~~s~~l~~il~~~sp~Ve~~SiDEafLDlT~~~~l------ 75 (538)
..|||+||++||++|||+++|+++||+|+++|+|++.|+++|++++.++.+|+|.||++|+||+|||||++.++
T Consensus 70 ~a~syeAR~~GV~~gm~~~~A~~lCP~lv~v~~d~~~Y~~~S~~i~~il~~~~p~ve~~SiDEafLDvT~~~~~~~~~~~ 149 (459)
T 1t94_A 70 STSNYHARRFGVRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYLNITKHLEERQNWPE 149 (459)
T ss_dssp EEECHHHHHTTCCTTCCHHHHHHHCTTCEEECCCHHHHHHHHHHHHHHHHHHCTTCEECSSSEEEEECHHHHHHHTTCCG
T ss_pred EecCHHHHHcCCCCCCcHHHHHHHCCCeEEECCCHHHHHHHHHHHHHHHHHhCCceEEeecceEEEECchhHHHhhcccc
Confidence 35899999999999999999999999999999999999999999999999999999999999999999998654
Q ss_pred ---------------------------------------------------------------------cCCCHHHHHHH
Q 009298 76 ---------------------------------------------------------------------RGISGIEIAEE 86 (538)
Q Consensus 76 ---------------------------------------------------------------------~g~~~~~la~~ 86 (538)
||.++..+|++
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~~~~~la~~ 229 (459)
T 1t94_A 150 DKRRYFIKMGSSVENDNPGKEVNKLSEHERSISPLLFEESPSDVQPPGDPFQVNFEEQNNPQILQNSVVFGTSAQEVVKE 229 (459)
T ss_dssp GGSEEECCC---CCCCCCCGGGGGGSTTTTTTGGGCC----------------------CCCCCCCEEECCSSHHHHHHH
T ss_pred cccccccccccccccccccCcccccccccccccccccccccccccccccccccccccccccccccchhhccCCHHHHHHH
Confidence 44368999999
Q ss_pred HHHHHHHHhCCceEEEecCChhHHHHHhcccCCCCeEEecCChHHHHHhhcCCCcccccCCCHHHHHHHHhhcCCCchHH
Q 009298 87 LRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEE 166 (538)
Q Consensus 87 IR~~I~~~~Glt~S~GIA~nk~lAKLAS~~aKP~G~~vl~~~~~~~~~fL~~lPl~~L~GIG~kt~~kL~~~lGI~TlgD 166 (538)
||++|++++|||||+|||+||++||||++.+||||+++++++++++.+||+++||++|||||+++.++|++ +||+|++|
T Consensus 230 IR~~I~~~~Glt~S~GIa~nk~LAKlAs~~~KP~g~~vl~~~~~~v~~fL~~lpv~~l~GiG~~~~~~L~~-lGI~T~gd 308 (459)
T 1t94_A 230 IRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPNRQAVMDFIKDLPIRKVSGIGKVTEKMLKA-LGIITCTE 308 (459)
T ss_dssp HHHHHHHHHSCCEEEEEESSHHHHHHHHHHTTTTCEEECCSSHHHHHHHHTTCBGGGCTTSCHHHHHHHHH-TTCCBHHH
T ss_pred HHHHHHHHhCCeEEEeecccHHHHHHHhhccCCCCEEEecCcHHHHHHHHHcCCHHhcCCcCHHHHHHHHH-cCCCcHHH
Confidence 99999999999999999999999999999999999999998644789999999999999999999999997 99999999
Q ss_pred HHhchHHHHHHcChhHHHHHHHhccCCCCCCCCCCCCCccceeeeccCccCCHHHHHHHHHHHHHHHHHHHHHhCCCccE
Q 009298 167 MLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRT 246 (538)
Q Consensus 167 L~~lp~~L~krFG~~~~~~L~~~a~Gid~~~v~~~~~pKSIs~e~tF~~~~d~e~L~~~L~~Lae~L~~RLr~~gl~~rt 246 (538)
|++.+..|.++||...+.+||+.++|++..++.+..++|||+++++|+.+.+.+++..+|.+|+++|+.||+++++.+++
T Consensus 309 L~~~~~~L~~~fG~~~~~~l~~~a~G~d~~~v~~~~~~kSi~~~~tf~~~~~~~~l~~~l~~L~~~l~~rL~~~~~~~~~ 388 (459)
T 1t94_A 309 LYQQRALLSLLFSETSWHYFLHISLGLGSTHLTRDGERKSMSVERTFSEINKAEEQYSLCQELCSELAQDLQKERLKGRT 388 (459)
T ss_dssp HHHTHHHHHHHSCHHHHHHHHHHHTTCCCSCC---C--CCEEEEEEEEEECCHHHHHHHHHHHHSSTTCCCC---CCCSC
T ss_pred HHhhHHHHHHHhChHhHHHHHHHHcCCCCcccCCCCCCcceeeeeecCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcce
Confidence 99998889999998888999999999999999888899999999999988899999999999999999999999999999
Q ss_pred EEEEEEEcCCceeEEEEecCCCCCCHHHHHHHHHHHHHhhC------CCCEEEEEEEecCCCcCc
Q 009298 247 LTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDK 305 (538)
Q Consensus 247 LtL~Lr~~d~~~~srs~~L~~~t~~~~~L~~~a~~LL~~~l------p~~VR~IGV~ls~L~~~~ 305 (538)
|+|++++++|...+++++++.|+++...|++++..||++.+ +.+||++||++++|.+..
T Consensus 389 vtl~l~~~~~~~~srs~~l~~~t~~~~~i~~~a~~ll~~~~~~~~~~~~~ir~lGv~~~~l~~~~ 453 (459)
T 1t94_A 389 VTIKLKNVNFEVKTRASTVSSVVSTAEEIFAIAKELLKTEIDADFPHPLRLRLMGVRISSFPNEE 453 (459)
T ss_dssp EEEEEEETTCCEEEECC-CCCCCCC--CHHHHHHHHHHHHHSSSTTSCCCEEEEEEEECC-----
T ss_pred EEEEEEECCCceeeEEEECCCccCCHHHHHHHHHHHHHHHHhhccCCCCcEEEEEEEEccCcCcc
Confidence 99999999999999999999999999999999999999874 457999999999999864
No 7
>4dez_A POL IV 1, DNA polymerase IV 1; Y-family, transferase; HET: DNA; 2.60A {Mycobacterium smegmatis}
Probab=100.00 E-value=8.9e-62 Score=508.58 Aligned_cols=297 Identities=27% Similarity=0.392 Sum_probs=184.0
Q ss_pred ccCHHHHHcCCCCCCcHHHHHhhCCCeEEEcCChHHHHHHHHHHHHHHHhcCCCeEeeCccEEEEEcCccchhcCCCHHH
Q 009298 3 FELLSARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 82 (538)
Q Consensus 3 ~~syeAR~~GVr~GM~l~~A~~LCP~Lvvvp~d~~~Y~~~s~~l~~il~~~sp~Ve~~SiDEafLDlT~~~~l~g~~~~~ 82 (538)
-|||+||++||++|||+++|+++||+++++++|++.|.++|+++++++.+|+|.||++|+||+|||+|+.. ++ ++.+
T Consensus 47 a~syeAr~~GV~~gm~~~~A~~lcP~l~~~~~~~~~Y~~~s~~v~~il~~~~p~ve~~SiDEafld~t~~~--~~-~~~~ 123 (356)
T 4dez_A 47 CASYEAREFGVHAGMPLRAAARRCPDATFLPSDPAAYDEASEQVMGLLRDLGHPLEVWGWDEAYLGADLPD--ES-DPVE 123 (356)
T ss_dssp EECHHHHTTTCCTTSBHHHHHHHCTTCEEEECCHHHHHHHHHHHHHHHHTTSSCEEEETTTEEEEEEECCT--TC-CHHH
T ss_pred EECHHHHHhCCCCCCcHHHHHHhCCCeEEECCcHHHHHHHHHHHHHHhhhcCCceeecCcchhheeccccc--CC-CHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999874 34 7899
Q ss_pred HHHHHHHHHHHHhCCceEEEecCChhHHHHHhcccCCCCeEEecCChHHHHHhhcCCCcccccCCCHHHHHHHHhhcCCC
Q 009298 83 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGIN 162 (538)
Q Consensus 83 la~~IR~~I~~~~Glt~S~GIA~nk~lAKLAS~~aKP~G~~vl~~~~~~~~~fL~~lPl~~L~GIG~kt~~kL~~~lGI~ 162 (538)
+|++||+.|++++|++||+|||+||++||+|++.+||+|+++++++ ++.+||+++||++|||||+++.++|++ +||+
T Consensus 124 ~a~~ir~~i~~~~gl~~siGIa~nk~lAKlAs~~~Kp~g~~~i~~~--~~~~~L~~lpv~~l~GiG~~~~~~L~~-~GI~ 200 (356)
T 4dez_A 124 VAERIRTVVAAETGLSCSVGISDNKQRAKVATGFAKPAGIYVLTEA--NWMTVMGDRPPDALWGVGPKTTKKLAA-MGIT 200 (356)
T ss_dssp HHHHHHHHHHHHHSCCEEEEEESSHHHHHHHHHHHCSSCEEECCTT--THHHHHTTSCGGGSTTCCHHHHHHHHH-TTCC
T ss_pred HHHHHHHHHHHHhCCccccchhccHHHHHHHHHHhhhcCcccccch--hhhhhhhcCcHHHHcCCchhHHHHHHH-cCCC
Confidence 9999999999999999999999999999999999999999999987 689999999999999999999999997 9999
Q ss_pred chHHHHhch-HHHHHHcChhHHHHHHHhccCCCCCCCCCC-CCCccceeeeccCc-cCCHHHHHHHHHHHHHHHHHHHHH
Q 009298 163 TCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLGSTNTPQA-RFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQK 239 (538)
Q Consensus 163 TlgDL~~lp-~~L~krFG~~~~~~L~~~a~Gid~~~v~~~-~~pKSIs~e~tF~~-~~d~e~L~~~L~~Lae~L~~RLr~ 239 (538)
|++||+++| ..|.++||...+.++|..++|++..++.+. ..+|||+++++|+. +.+.+++..+|..|+++++.||++
T Consensus 201 Ti~dL~~~~~~~L~~~fG~~~g~~l~~~a~G~d~~~v~~~~~~~ksi~~~~tf~~~~~~~~~l~~~l~~la~~~~~rLr~ 280 (356)
T 4dez_A 201 TVADLAVTDPSVLTTAFGPSTGLWLLLLAKGGGDTEVSSEPWVPRSRSHVVTFPQDLTERREMDSAVRDLALQTLAEIVE 280 (356)
T ss_dssp SHHHHHTSCHHHHHHHHCHHHHHHHHHHHTTCCCCCCCC-----------------------------------------
T ss_pred eecccccCCHHHHHHHhCChHHHHHHHHHcCCCcccccccccccccccccccCCCcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998 899999998888999999999999998764 46799999999987 789999999999999999999999
Q ss_pred hCCCccEEEEEEEEcCCceeEEEEecCCCCCCHHHHHHHHHHHHHhhC-CCCEEEEEEEecCCCcCc
Q 009298 240 EGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL-PVSLRLIGLRVTQFNEDK 305 (538)
Q Consensus 240 ~gl~~rtLtL~Lr~~d~~~~srs~~L~~~t~~~~~L~~~a~~LL~~~l-p~~VR~IGV~ls~L~~~~ 305 (538)
+++.+++|+|++++++|.+.+++.+++.||+++..|++.+..||++++ +.+||+|||++++|.++.
T Consensus 281 ~~~~~~~l~v~ir~~~f~~~t~~~~l~~pt~d~~~i~~~a~~ll~~~~~~~~vRliGV~ls~l~d~~ 347 (356)
T 4dez_A 281 QGRIVTRVAVTVRTSTFYTRTKIRKLPAPSTDAGQIVDTALAVLDQFELDRPVRLLGVRLELAMDDV 347 (356)
T ss_dssp -------------------------------------------------------------------
T ss_pred cCCceeEEEEEEEeCCCeEEEEEEECCcccCCHHHHHHHHHHHHHhccCCCCEEEEEEEECCCCCCC
Confidence 999999999999999999999999999999999999999999999985 478999999999998753
No 8
>3osn_A DNA polymerase IOTA; hoogsteen base PAIR, protein-DNA complex, Y-family DNA polym translesion synthesis, nucleoside triphosphate; HET: DNA DOC 6OG TTP; 1.90A {Homo sapiens} PDB: 2dpj_A* 2fll_A* 2fln_A* 2flp_A* 3epg_A* 3epi_A* 2dpi_A* 3g6v_A* 3g6y_A* 3g6x_A* 3gv7_B* 3gv8_B* 3ngd_A* 3gv5_B* 3q8p_B* 3q8q_B* 3q8r_B* 3q8s_B* 4ebc_A* 4ebd_A* ...
Probab=100.00 E-value=1.5e-60 Score=509.11 Aligned_cols=301 Identities=25% Similarity=0.371 Sum_probs=277.4
Q ss_pred CccCHHHHHcCCCCCCcHHHHHhhCCCeEEEcC-ChHHHHHHHHHHHHHHHhcCCCeEeeCccEEEEEcCccch------
Q 009298 2 RFELLSARRFGVRAAMPGFIARKLCPELIFVPT-DFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCR------ 74 (538)
Q Consensus 2 ~~~syeAR~~GVr~GM~l~~A~~LCP~Lvvvp~-d~~~Y~~~s~~l~~il~~~sp~Ve~~SiDEafLDlT~~~~------ 74 (538)
..|||+||++||++|||+++|+++||+++++++ |++.|+++|+++++++.+|+|.||++|+||+|||||++.+
T Consensus 64 ~a~syeAR~~GV~~gm~~~~A~~lcP~lv~v~~~~~~~Y~~~S~~i~~il~~~tp~ve~~SiDE~fLDvt~~~~~~l~~~ 143 (420)
T 3osn_A 64 VTCNYEARKLGVKKLMNVRDAKEKCPQLVLVNGEDLTRYREMSYKVTELLEEFSPVVERLGFDENFVDLTEMVEKRLQQL 143 (420)
T ss_dssp EEECHHHHTTTCCTTEEHHHHHHHCTTCEEEECCCCHHHHHHHHHHHHHHHHHCSCEEEETTTEEEEECHHHHHHHHHHS
T ss_pred EECCHHHHHcCCCCCCcHHHHHHhCccccccCCCCHHHHHHHHHHHHHHHHHhCCCeEEecCCEEEEECcccchhhcccc
Confidence 358999999999999999999999999999996 9999999999999999999999999999999999999853
Q ss_pred -------------hcCCC--------------HHHHHHHHHHHHHHHhCCceEEEecCChhHHHHHhcccCCCCeEEecC
Q 009298 75 -------------ERGIS--------------GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 127 (538)
Q Consensus 75 -------------l~g~~--------------~~~la~~IR~~I~~~~Glt~S~GIA~nk~lAKLAS~~aKP~G~~vl~~ 127 (538)
+||.. +.++|++||++|++++|+|||+|||+||++||||++.+||+|++++.+
T Consensus 144 ~~~~~~~~~~~g~l~g~~~~~~~~~~~~~l~~~~~la~~Ir~~I~~~~Glt~svGIa~nk~LAKlAs~~~KP~g~~vl~~ 223 (420)
T 3osn_A 144 QSDELSAVTVSGHVYNNQSINLLDVLHIRLLVGSQIAAEMREAMYNQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLP 223 (420)
T ss_dssp CSSSGGGCCCCSEEGGGCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHTSSCSSCEEECCG
T ss_pred ccccccccccccccccccccccccchhhcchHHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHhhhhcCCCCeEEecH
Confidence 34421 579999999999999999999999999999999999999999999987
Q ss_pred ChHHHHHhhcCCC-cccccCCCHHHHHHHHhhcCCCchHHHHhch-HHHHHHcChhHHHHHHHhccCCCCCCCCCCCCCc
Q 009298 128 DRMAVMTFISSLP-IRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRK 205 (538)
Q Consensus 128 ~~~~~~~fL~~lP-l~~L~GIG~kt~~kL~~~lGI~TlgDL~~lp-~~L~krFG~~~~~~L~~~a~Gid~~~v~~~~~pK 205 (538)
+ ++.+||+++| |++|||||+++.++|++ +||+|++||+++| ..|.++||...+.+||++++|+|+.++.+..++|
T Consensus 224 ~--~~~~~L~~Lppv~~l~GIG~~t~~~L~~-lGI~TigdLa~~~~~~L~~~fG~~~g~~L~~~a~G~d~~~V~~~~~~k 300 (420)
T 3osn_A 224 E--SCQHLIHSLNHIKEIPGIGYKTAKCLEA-LGINSVRDLQTFSPKILEKELGISVAQRIQKLSFGEDNSPVILSGPPQ 300 (420)
T ss_dssp G--GHHHHHHHCSSGGGSTTCCHHHHHHHHH-TTCCSHHHHHHSCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCCCCSCS
T ss_pred H--HHHHhhccCccHHHccCCCHHHHHHHHH-hCCCcHHHHhhCCHHHHHHHhCchHHHHHHHHhcCCCccccCCCCCCC
Confidence 5 6899999997 99999999999999997 9999999999998 8999999988789999999999999998888999
Q ss_pred cceeeeccCccCCHHHHHHHHHHHHHHHHHHHHHhCCCccEEEEEEEE-c---CCceeEEEEecCCC---------CCCH
Q 009298 206 SISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT-A---SFEVRTRAVTLQKY---------ISSS 272 (538)
Q Consensus 206 SIs~e~tF~~~~d~e~L~~~L~~Lae~L~~RLr~~gl~~rtLtL~Lr~-~---d~~~~srs~~L~~~---------t~~~ 272 (538)
||+.+++|..+.+.+++..+|.+|+++|+.||+++++.+++|+|++++ + ++...+++.+++.+ |++.
T Consensus 301 Si~~e~tf~~~~~~~~~~~~l~~La~~l~~rLr~~~~~~~tv~l~ir~~~~~~~~~~~sr~~~l~~~~~~~l~~~~t~~~ 380 (420)
T 3osn_A 301 SFSEEDSFKKCSSEVEAKNKIEELLASLLNRVCQDGRKPHTVRLIIRRYSSEKHYGRESRQCPIPSHVIQKLGTGNYDVM 380 (420)
T ss_dssp EEEEEEECSSCCCSSSHHHHHHHHHHHHHHHHHHHCSCEEEEEEEEEEECSSCCCCCEEEEEECCTTTCCC-----CTTH
T ss_pred ceeeeeeCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCcccEEEEEEEeCCCCCCCceeEEEEECCCccccccccCCCchH
Confidence 999999998877889999999999999999999999999999999995 3 46778999999986 7889
Q ss_pred HHHHHHHHHHHHhhCC--CC--EEEEEEEecCCCcCc
Q 009298 273 EDILKHASVLLKAELP--VS--LRLIGLRVTQFNEDK 305 (538)
Q Consensus 273 ~~L~~~a~~LL~~~lp--~~--VR~IGV~ls~L~~~~ 305 (538)
.+|++.+..||+++++ .+ ||+|||++++|.+..
T Consensus 381 ~~i~~~a~~Lf~~~~~~~~~~~iRllgv~~~~l~~~~ 417 (420)
T 3osn_A 381 TPMVDILMKLFRNMVNVKMPFHLTLLSVCFCNLKALN 417 (420)
T ss_dssp HHHHHHHHHHHHHHSCSSSCCEEEEEEEEEEEEC---
T ss_pred HHHHHHHHHHHHHhhcccCCcceeEEEEEEeCcccCc
Confidence 9999999999999863 34 999999999999864
No 9
>2aq4_A DNA repair protein REV1; polymerase, PAD, N-digit, G-loop, transferase; HET: DNA DOC DCP; 2.32A {Saccharomyces cerevisiae} PDB: 3bjy_A* 3osp_A*
Probab=100.00 E-value=5.2e-58 Score=491.86 Aligned_cols=299 Identities=19% Similarity=0.224 Sum_probs=272.7
Q ss_pred CccCHHHHHcCCCCCCcHHHHHhhCCC---eEEEcCChHHHHHHHHHHHHHHHhc--CCCeEeeCccEEEEE--cCccch
Q 009298 2 RFELLSARRFGVRAAMPGFIARKLCPE---LIFVPTDFTKYTYYSDLTRKVFCKY--DPNFMAASLDEAYLD--ITEVCR 74 (538)
Q Consensus 2 ~~~syeAR~~GVr~GM~l~~A~~LCP~---Lvvvp~d~~~Y~~~s~~l~~il~~~--sp~Ve~~SiDEafLD--lT~~~~ 74 (538)
..|||+||++||++|||+++|+++||+ ++++|+|++.|+++|+++++++.+| +|.||++|+||+||| +|+..+
T Consensus 97 ~a~syeAR~~GV~~gm~~~~A~~lcP~~~~lvv~~~~~~~Y~~~S~~i~~il~~~~~t~~ve~~SiDEaflD~~vt~~~~ 176 (434)
T 2aq4_A 97 ASCNYVARSYGIKNGMWVSQAEKMLPNGIKLISLPYTFEQFQLKSEAFYSTLKRLNIFNLILPISIDEAVCVRIIPDNIH 176 (434)
T ss_dssp SEECHHHHHTTCCTTCBHHHHHTTCCTTCCCEEECCCHHHHHHHHHHHHHHHHHTTCCSEEEEEETTEEEEEEEECC---
T ss_pred EEcCHHHHHcCCCCCCcHHHHHHhCCCCCCEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEcCceeEEcCcCccchh
Confidence 468999999999999999999999999 9999999999999999999999997 689999999999999 999887
Q ss_pred hc-CCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHHHHhcccCCCCeEEecCChHHH-HHhhcCCCcccccCCCHHH
Q 009298 75 ER-GISGIEIAEELRTSVYEEA-GLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAV-MTFISSLPIRKIGGIGKVT 151 (538)
Q Consensus 75 l~-g~~~~~la~~IR~~I~~~~-Glt~S~GIA~nk~lAKLAS~~aKP~G~~vl~~~~~~~-~~fL~~lPl~~L~GIG~kt 151 (538)
++ + ++.++|++||++|++++ |+|||+|||+||++||||++.+||+|+++++++ ++ .+||+++||++|||||+++
T Consensus 177 ~~~~-~~~~la~~Ir~~I~~~~gGlt~svGIa~nk~lAKlAs~~aKp~G~~~l~~~--~~~~~~l~~lpv~~l~GiG~~~ 253 (434)
T 2aq4_A 177 NTNT-LNARLCEEIRQEIFQGTNGCTVSIGCSDSLVLARLALKMAKPNGYNITFKS--NLSEEFWSSFKLDDLPGVGHST 253 (434)
T ss_dssp ---C-HHHHHHHHHHHHHHHHHSSCCEEEEEESSHHHHHHHHHHHCSSCEECCCGG--GCCHHHHTTCCGGGSTTCCHHH
T ss_pred hcCC-CHHHHHHHHHHHHHHHcCCCcEEEEecCCHHHHHHHHhcCCCCCEEEECCh--hhHHHHhhcCCcccccCcCHHH
Confidence 64 5 79999999999999999 899999999999999999999999999999875 44 6899999999999999999
Q ss_pred HHHHHhh-cCCCchHHHHhc-h-HHHHHHcChhHHHHHHHhccCCCCCCCC-----CC--CCCccceeeeccCc-cCCHH
Q 009298 152 EHILRDV-FGINTCEEMLQK-G-SLLCAVFSHSTADFFLSVGLGLGSTNTP-----QA--RFRKSISSERTFSV-TEDKA 220 (538)
Q Consensus 152 ~~kL~~~-lGI~TlgDL~~l-p-~~L~krFG~~~~~~L~~~a~Gid~~~v~-----~~--~~pKSIs~e~tF~~-~~d~e 220 (538)
.++|++. +||+|++||+++ | ..|.++||...+.++|+.++|+|..++. +. .++|||+.+++|+. +.+.+
T Consensus 254 ~~~L~~~~~GI~ti~dL~~~~~~~~L~~~fG~~~g~~l~~~a~G~d~~~v~~~~~~~~~~~~~ksi~~~~tf~~~~~~~~ 333 (434)
T 2aq4_A 254 LSRLESTFDSPHSLNDLRKRYTLDALKASVGSKLGMKIHLALQGQDDEESLKILYDPKEVLQRKSLSIDINWGIRFKNIT 333 (434)
T ss_dssp HHHHHHHTTCCCSHHHHHHHCCHHHHHHHHCSSHHHHHHHHTTTCCCHHHHHHHHCHHHHHSCCCEEEEECSSCCCSSHH
T ss_pred HHHHHHhcCCceEHHHHHhcCCHHHHHHHhCHHHHHHHHHHhcCCCcccccccccCcccCCCCceeEEEEECCCCCCCHH
Confidence 9999942 699999999999 8 8999999976678888999999999874 22 47899999999997 78999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCccEEEEEEEEc---------------CCceeEEEEecCCCCCCHHHHHHHHHHHHHh
Q 009298 221 LLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA---------------SFEVRTRAVTLQKYISSSEDILKHASVLLKA 285 (538)
Q Consensus 221 ~L~~~L~~Lae~L~~RLr~~gl~~rtLtL~Lr~~---------------d~~~~srs~~L~~~t~~~~~L~~~a~~LL~~ 285 (538)
++..+|.+|+++|+.||+++++.+++|+|++++. +|...+++++++.||++...|++.+..+|++
T Consensus 334 ~l~~~l~~l~~~l~~rLr~~~~~~~~v~l~l~~r~~~~~~~~~ky~g~gd~~~~s~s~~l~~pt~~~~~i~~~a~~ll~~ 413 (434)
T 2aq4_A 334 QVDLFIERGCQYLLEKLNEINKTTSQITLKLMRRCKDAPIEPPKYMGMGRCDSFSRSSRLGIPTNEFGIIATEMKSLYRT 413 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTEEEEEEEEEEEEECTTSCSSCSSTTCCCSEEEEEEEEEEEEEECCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEecCCCCcccccccCCCCcccceEEeecCCCcCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999842 2567889999999999999999999999999
Q ss_pred hC--CCCEEEEEEEecCCCc
Q 009298 286 EL--PVSLRLIGLRVTQFNE 303 (538)
Q Consensus 286 ~l--p~~VR~IGV~ls~L~~ 303 (538)
++ +.+||+|||++++|.+
T Consensus 414 ~~~~~~~vR~lgv~~s~l~~ 433 (434)
T 2aq4_A 414 LGCPPMELRGLALQFNKLVD 433 (434)
T ss_dssp HTCCGGGEEEEEEEEEEEEE
T ss_pred hcCCCCCEEEEEEEEeCccc
Confidence 85 3799999999999875
No 10
>4ecq_A DNA polymerase ETA; transferase-DNA complex; HET: DNA DTP; 1.50A {Homo sapiens} PDB: 3mr2_A* 3mr4_A* 3mr5_A* 3si8_A* 4dl2_A* 4dl3_A* 4dl4_A* 4dl5_A* 4dl6_A* 4dl7_A* 3mr3_A* 4ecr_A* 4ecs_A* 4ect_A* 4ecu_A* 4ecv_A* 4ecw_A* 4ecx_A* 4ecy_A* 4ecz_A* ...
Probab=100.00 E-value=1.2e-57 Score=489.10 Aligned_cols=295 Identities=26% Similarity=0.416 Sum_probs=271.2
Q ss_pred ccCHHHHHcCCCCCCcHHHHHhhCCCeEEEc-------CChHHHHHHHHHHHHHHHhcCCCeEeeCccEEEEEcCccch-
Q 009298 3 FELLSARRFGVRAAMPGFIARKLCPELIFVP-------TDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCR- 74 (538)
Q Consensus 3 ~~syeAR~~GVr~GM~l~~A~~LCP~Lvvvp-------~d~~~Y~~~s~~l~~il~~~sp~Ve~~SiDEafLDlT~~~~- 74 (538)
.|||+||++||++||++++|+++||++++++ +|++.|+++|+++++++.+|+ .||++||||+|||||++.+
T Consensus 52 A~syeAR~~GV~~gm~~~~A~~lcP~l~~~~~~~~~~~~~~~~Y~~~S~~i~~il~~~~-~vE~~SiDEafLDlT~~~~~ 130 (435)
T 4ecq_A 52 AVSYEARAFGVTRSMWADDAKKLCPDLLLAQVRESRGKANLTKYREASVEVMEIMSRFA-VIERASIDEAYVDLTSAVQE 130 (435)
T ss_dssp EECHHHHTTTCCTTCBHHHHHHHCTTCEEEECCEETTEECCHHHHHHHHHHHHHHHHHS-CEEEEETTEEEEECHHHHHH
T ss_pred EeCHHHHHhCCCCCCcHHHHHHhCCCeEEeccccccCCCCHHHHHHHHHHHHHHHHhcC-ceeecccceEEEECccchhh
Confidence 5899999999999999999999999999997 799999999999999999999 8999999999999999765
Q ss_pred ----hcCCC--------------------------------------------------------HHHHHHHHHHHHHHH
Q 009298 75 ----ERGIS--------------------------------------------------------GIEIAEELRTSVYEE 94 (538)
Q Consensus 75 ----l~g~~--------------------------------------------------------~~~la~~IR~~I~~~ 94 (538)
+||.. +..+|++||++|+++
T Consensus 131 ~l~~l~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ia~~Ir~~I~~~ 210 (435)
T 4ecq_A 131 RLQKLQGQPISADLLPSTYIEGLPQGPTTAEETVQKEGMRKQGLFQWLDSLQIDNLTSPDLQLTVGAVIVEEMRAAIERE 210 (435)
T ss_dssp HHHHHTTCCCCGGGCTTEEETTCSCCCC-----CSHHHHHHHHHHHHHHHCCTTCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhccccccccccccccccccCCCcccccccccchhhhhcccccccccccccccccchhhhhhHHHHHHHHHHHHHHHH
Confidence 34310 136899999999999
Q ss_pred hCCceEEEecCChhHHHHHhcccCCCCeEEecCChHHHHHhhcCCCcccccCCCHHHHHH-HHhhcCCCchHHHHhch-H
Q 009298 95 AGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHI-LRDVFGINTCEEMLQKG-S 172 (538)
Q Consensus 95 ~Glt~S~GIA~nk~lAKLAS~~aKP~G~~vl~~~~~~~~~fL~~lPl~~L~GIG~kt~~k-L~~~lGI~TlgDL~~lp-~ 172 (538)
+|+|||+|||+||++||||++.+||+|+++++++ ++.+||+++||++|||||+++.++ |++ +||+|++||+++| .
T Consensus 211 ~Gl~~svGIa~nk~lAKlAs~~~Kp~g~~vv~~~--~~~~~L~~lpv~~l~GiG~~~~~~lL~~-lGI~TigdLa~~~~~ 287 (435)
T 4ecq_A 211 TGFQCSAGISHNKVLAKLACGLNKPNRQTLVSHG--SVPQLFSQMPIRKIRSLGGKLGASVIEI-LGIEYMGELTQFTES 287 (435)
T ss_dssp HSCCEEEEEESSHHHHHHHHHHSCSSCEEECCGG--GHHHHHHTCBGGGSTTCSSHHHHHHHHH-HTCCBGGGGGGSCHH
T ss_pred hCCcEEEEecCCHHHHHHHhccCCCCceEEEehh--HHHHHHhhCCHHHhcCCCHHHHHHHHHH-cCCCcHHHHhhCCHH
Confidence 9999999999999999999999999999999875 689999999999999999998766 787 9999999999998 8
Q ss_pred HHHHHcChhHHHHHHHhccCCCCCCCCCCCCCccceeeeccCc---cCCHHHHHHHHHHHHHHHHHHHHHh----CCCcc
Q 009298 173 LLCAVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSV---TEDKALLYRKLAEIAEMLSADMQKE----GLRGR 245 (538)
Q Consensus 173 ~L~krFG~~~~~~L~~~a~Gid~~~v~~~~~pKSIs~e~tF~~---~~d~e~L~~~L~~Lae~L~~RLr~~----gl~~r 245 (538)
.|.++||...+.+||+.++|+|.+++.+..++|||+++++|+. +.+.+++..+|..|+++|+.||+++ ++.++
T Consensus 288 ~L~~~fG~~~g~~L~~~a~G~d~~~v~~~~~~ksi~~~~tf~~~~~i~~~~~l~~~l~~la~~l~~rLr~~~~~~~~~~~ 367 (435)
T 4ecq_A 288 QLQSHFGEKNGSWLYAMCRGIEHDPVKPRQLPKTIGCSKNFPGKTALATREQVQWWLLQLAQELEERLTKDRNDNDRVAT 367 (435)
T ss_dssp HHHHHHCHHHHHHHHHHTTTCCCCCCCCBCSCSCEEEEEECCGGGCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHSEEEE
T ss_pred HHHHHhCccHHHHHHHHhhCCCCcccCCCCCCCeeeeeEEcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhcCceEE
Confidence 9999999777888999999999999988889999999999996 5789999999999999999999997 89999
Q ss_pred EEEEEEEEcC---CceeEEEEecCCCCCCHHHHHHHHHHHHHhhCC--------CCEEEEEEEecCCCc
Q 009298 246 TLTLKLKTAS---FEVRTRAVTLQKYISSSEDILKHASVLLKAELP--------VSLRLIGLRVTQFNE 303 (538)
Q Consensus 246 tLtL~Lr~~d---~~~~srs~~L~~~t~~~~~L~~~a~~LL~~~lp--------~~VR~IGV~ls~L~~ 303 (538)
+|+|++++.+ +...+++.+++. +++..|...+..||++++. .+||.|||++++|++
T Consensus 368 ~l~v~ir~~~~~~~~~~~R~~~l~~--~~~~~i~~~a~~L~~~~~~~~~~~~~~~pir~lgvs~s~f~~ 434 (435)
T 4ecq_A 368 QLVVSIRVQGDKRLSSLRRCCALTR--YDAHKMSHDAFTVIKNCNTSGIQTEWSPPLTMLFLCATKFSA 434 (435)
T ss_dssp EEEEEEEETTCCSSCSEEEEEECCS--CCHHHHHHHHHHHHGGGCCCSSTTEEEEEEEEEEEEEEEEEE
T ss_pred EEEEEEEeCCCCCCceeEEeccCCC--CCHHHHHHHHHHHHHHHhhccccccCCCCeeEEEEEEeeccc
Confidence 9999999976 466889999975 6799999999999999872 479999999999985
No 11
>3mfi_A DNA polymerase ETA; DNA damage, DNA repair, DNA replication, DNA synthesis, NUCL binding, magnesium; HET: DNA DOC TTD DTP; 1.76A {Saccharomyces cerevisiae} PDB: 3mfh_A* 3oha_A* 3ohb_A* 2r8j_A* 2r8k_A* 2wtf_A* 2xgp_A* 2xgq_A* 1jih_A*
Probab=100.00 E-value=4.2e-57 Score=493.00 Aligned_cols=300 Identities=20% Similarity=0.242 Sum_probs=275.4
Q ss_pred ccCHHHHHcCCCCCCcHHHHHhhCCCeEEEc----------------------------------CChHHHHHHHHHHHH
Q 009298 3 FELLSARRFGVRAAMPGFIARKLCPELIFVP----------------------------------TDFTKYTYYSDLTRK 48 (538)
Q Consensus 3 ~~syeAR~~GVr~GM~l~~A~~LCP~Lvvvp----------------------------------~d~~~Y~~~s~~l~~ 48 (538)
.|||+||++||++|||+++|+++||++++++ ++++.|+++|+++++
T Consensus 68 a~sy~AR~~GI~~~~~~~~A~~~CP~l~~v~~~v~~~ge~~~~y~~~~~~~~~~~~~~~~~~~~k~~~~~Yr~~S~~i~~ 147 (520)
T 3mfi_A 68 AVSYAARKYGISRMDTIQEALKKCSNLIPIHTAVFKKGEDFWQYHDGCGSWVQDPAKQISVEDHKVSLEPYRRESRKALA 147 (520)
T ss_dssp EECHHHHTTTCCTTCBHHHHHTTCTTCEEEECEEEETTCSCEECCTTCSTTCSCTTSCCCTTSEEEECHHHHHHHHHHHH
T ss_pred EeCHHHHHcCCCCCCcHHHHHHhCccceEeeeeeeecccccccccccccccccccccccCcccccCCHHHHHHHHHHHHH
Confidence 5899999999999999999999999998862 389999999999999
Q ss_pred HHHhcCCCeEeeCccEEEEEcCccch--------------------------h---------------------------
Q 009298 49 VFCKYDPNFMAASLDEAYLDITEVCR--------------------------E--------------------------- 75 (538)
Q Consensus 49 il~~~sp~Ve~~SiDEafLDlT~~~~--------------------------l--------------------------- 75 (538)
+|.+|+|.||++||||+|||||+.+. .
T Consensus 148 il~~~~~~vE~~SIDEaflDlt~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~p~~~~~~~~~~~~g~ 227 (520)
T 3mfi_A 148 IFKWACDLVERASIDEVFLDLGRICFNMLMFDNEYELTGDLKLKDALSNIREAFIGGNYDINSHLPLIPEKIKSLKFEGD 227 (520)
T ss_dssp HHHHHCSCEEEEETTEEEEECHHHHHHHHHHCSSCEEETTEEHHHHTHHHHHHHHHTCCCTTSEEECCCGGGGGCCCCSE
T ss_pred HHHHhCCCeEEeccceEEEEcCcchhhccccccccccccccccccchhhhhhccccccccccccccccccchhccccccc
Confidence 99999999999999999999997641 0
Q ss_pred -cC---------------CCHHHHHHHHHHHHHHHhCCceEEEecCChhHHHHHhcccCCCCeEEecCChHHHHHhhcC-
Q 009298 76 -RG---------------ISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISS- 138 (538)
Q Consensus 76 -~g---------------~~~~~la~~IR~~I~~~~Glt~S~GIA~nk~lAKLAS~~aKP~G~~vl~~~~~~~~~fL~~- 138 (538)
|+ ..+.++|++||++|++++|||||+|||+||++||||++.+||+|+++++++ ++.+||++
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~ia~~IR~~I~~~tGlt~SvGIa~nK~LAKlAs~~~KP~G~~vi~~~--~~~~fL~~~ 305 (520)
T 3mfi_A 228 VFNPEGRDLITDWDDVILALGSQVCKGIRDSIKDILGYTTSCGLSSTKNVCKLASNYKKPDAQTIVKND--CLLDFLDCG 305 (520)
T ss_dssp ECCTTCCCSCCSHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHTTSCSSEEEECCGG--GHHHHHTSS
T ss_pred ccccccccccccccccccchHHHHHHHHHHHHHHHhCCcEEEEEeCCHHHHHHHhcccCCCCeEEcChH--HHHHHhhcc
Confidence 11 026899999999999999999999999999999999999999999999875 78999998
Q ss_pred -CCcccccCCCHHHHHHHHhhc-CC---Cch-----------HHHHhch-HHHHHHcCh------------hHHHHHHHh
Q 009298 139 -LPIRKIGGIGKVTEHILRDVF-GI---NTC-----------EEMLQKG-SLLCAVFSH------------STADFFLSV 189 (538)
Q Consensus 139 -lPl~~L~GIG~kt~~kL~~~l-GI---~Tl-----------gDL~~lp-~~L~krFG~------------~~~~~L~~~ 189 (538)
+||++|||||++++++|++ + || +|+ +||++++ ..|.++||. ..+.++|+.
T Consensus 306 ~lPV~~l~GIG~~t~~~L~~-llGI~~~~ti~~i~~l~~~t~~dL~~~~~~~L~~~fG~~~~~~~d~~~~g~~g~~L~~~ 384 (520)
T 3mfi_A 306 KFEITSFWTLGGVLGKELID-VLDLPHENSIKHIRETWPDNAGQLKEFLDAKVKQSDYDRSTSNIDPLKTADLAEKLFKL 384 (520)
T ss_dssp SCCGGGSTTCSSHHHHHHHH-HTTCCSSSHHHHHHHHSCSCHHHHHHHHHHHHHSTTCC---CCCCTTCHHHHHHHHHHH
T ss_pred CCcHHHhcCCCHHHHHHHHH-hcCCCcccchhhhhhccCCCHHHHHhcCHHHHHHhcCccccccccchhhhHHHHHHHHH
Confidence 9999999999999999998 7 99 665 7888887 789999995 568889999
Q ss_pred ccCCCCCCCCCCCCCccceeeeccCc--cCCHHHHHHHHHHHHHHHHHHHHHhC------CCccEEEEEEEEcCCceeEE
Q 009298 190 GLGLGSTNTPQARFRKSISSERTFSV--TEDKALLYRKLAEIAEMLSADMQKEG------LRGRTLTLKLKTASFEVRTR 261 (538)
Q Consensus 190 a~Gid~~~v~~~~~pKSIs~e~tF~~--~~d~e~L~~~L~~Lae~L~~RLr~~g------l~~rtLtL~Lr~~d~~~~sr 261 (538)
++|+|..++.+.+++|||+++++|.. +.+.+++..+|.+|+++|+.||++.+ +.+++|+|++++++|...++
T Consensus 385 arGid~~~V~~~~~~KSi~~~~tf~~~~i~~~~~l~~~L~~la~~l~~rLr~~~~~~~~~~~~rtvtl~ir~~df~~~tr 464 (520)
T 3mfi_A 385 SRGRYGLPLSSRPVVKSMMSNKNLRGKSCNSIVDCISWLEVFCAELTSRIQDLEQEYNKIVIPRTVSISLKTKSYEVYRK 464 (520)
T ss_dssp TTTCCCCCCCCCCSCSCEEEEEECCTTTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHTEEEEEEEEEEEEECTTCCEEEE
T ss_pred hCCCCCCCCCCCCCCCceeeEEEcCCCCcCCHHHHHHHHHHHHHHHHHHHHhcccccccceeeeEEEEEEEeCCCCcceE
Confidence 99999999988889999999999986 58999999999999999999999984 99999999999999999999
Q ss_pred EEecCCCC--CCHHHHHHHHHHHHHhhC-------CCCEEEEEEEecCCCcCc
Q 009298 262 AVTLQKYI--SSSEDILKHASVLLKAEL-------PVSLRLIGLRVTQFNEDK 305 (538)
Q Consensus 262 s~~L~~~t--~~~~~L~~~a~~LL~~~l-------p~~VR~IGV~ls~L~~~~ 305 (538)
+.+++.|| ++..+|++.+..||++++ ..+||+|||++++|+..+
T Consensus 465 s~~l~~pt~~~~~~~I~~~a~~Ll~~~~~~~~~~~~~~iRliGV~~s~Le~~~ 517 (520)
T 3mfi_A 465 SGPVAYKGINFQSHELLKVGIKFVTDLDIKGKNKSYYPLTKLSMTITNFDIID 517 (520)
T ss_dssp EEECCCCCGGGHHHHHHHHHHHHHHHHHHHTTTSSCSSCSEEEEEEEEEEEEE
T ss_pred EEECCCCCccCCHHHHHHHHHHHHHHHhhhcccccCCceeEEEEEEeCCEecC
Confidence 99999999 899999999999999974 268999999999998764
No 12
>1im4_A DBH; DNA polymerase PALM, thumb, fingers, helix-hairpin-helix, fidelity, processivity, transferase; 2.30A {Sulfolobus solfataricus} SCOP: e.8.1.7
Probab=100.00 E-value=1.5e-44 Score=354.56 Aligned_cols=170 Identities=35% Similarity=0.555 Sum_probs=156.5
Q ss_pred CccCHHHHHcCCCCCCcHHHHHhhCCCeEEEcCChHHHHHHHHHHHHHHHhcCCCeEeeCccEEEEEcCccch-hcCCCH
Q 009298 2 RFELLSARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCR-ERGISG 80 (538)
Q Consensus 2 ~~~syeAR~~GVr~GM~l~~A~~LCP~Lvvvp~d~~~Y~~~s~~l~~il~~~sp~Ve~~SiDEafLDlT~~~~-l~g~~~ 80 (538)
..|||+||++||++|||+++|+++||+++++++|++.|+++|+++++++.+|+|.||++|+||+|||+|++.+ +|| ++
T Consensus 49 ~a~s~~Ar~~GV~~gm~~~~A~~lcP~l~v~~~~~~~Y~~~s~~i~~~l~~~tp~ve~~siDE~~lDvt~~~~~l~~-~~ 127 (221)
T 1im4_A 49 ATANYEARKLGVKAGMPIIKAMQIAPSAIYVPMRKPIYEAFSNRIMNLLNKHADKIEVASIDEAYLDVTNKVEGNFE-NG 127 (221)
T ss_dssp EEECHHHHTTTCCTTCBHHHHHHHCTTSEEEECCHHHHHHHHHHHHHHHHTTCSEEEEEETTEEEEECTTTTTTCHH-HH
T ss_pred EECCHHHHHcCCCCCCcHHHHHHHCCCeEEECCCHHHHHHHHHHHHHHHHHhCCceEEecCCeEEEEecchhhhccC-CH
Confidence 3589999999999999999999999999999999999999999999999999999999999999999999998 888 79
Q ss_pred HHHHHHHHHHHHHHhCCceEEEecCChhHHHHHhcccCCCCeEEecCChHHHHHhhcCCCcccccCCCHHHHHHHHhhcC
Q 009298 81 IEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFG 160 (538)
Q Consensus 81 ~~la~~IR~~I~~~~Glt~S~GIA~nk~lAKLAS~~aKP~G~~vl~~~~~~~~~fL~~lPl~~L~GIG~kt~~kL~~~lG 160 (538)
.++|++||++|++++|+|||+|||+||++||||++.+||+|+++++++ ++.+||+++||++|||||+++.++|++ +|
T Consensus 128 ~~la~~ir~~i~~~~Gl~~svGia~nk~lAKlas~~~Kp~g~~~~~~~--~~~~~L~~lpv~~l~giG~~~~~~L~~-~G 204 (221)
T 1im4_A 128 IELARKIKQEILEKEKITVTVGVAPNKILAKIIADKSKPNGLGVIRPT--EVQDFLNELDIDEIPGIGSVLARRLNE-LG 204 (221)
T ss_dssp HHHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHHTCSSCEEECCGG--GHHHHHHTCBGGGSTTCCHHHHHHHHH-TT
T ss_pred HHHHHHHHHHHHHHhCCeEEEEeCCCHHHHHHHHhhcCCCCEEEECHH--HHHHHHHhCCcccccCCCHHHHHHHHH-cC
Confidence 999999999999999999999999999999999999999999999875 789999999999999999999999998 99
Q ss_pred CCchHHHHhch-HHHH
Q 009298 161 INTCEEMLQKG-SLLC 175 (538)
Q Consensus 161 I~TlgDL~~lp-~~L~ 175 (538)
|+|++||+++| ..|.
T Consensus 205 i~TigdL~~~~~~~L~ 220 (221)
T 1im4_A 205 IQKLRDILSKNYNELE 220 (221)
T ss_dssp CCBTTC----------
T ss_pred CCcHHHHHCCCHHHhh
Confidence 99999999998 5554
No 13
>1unn_C POL IV, DNA polymerase IV; beta-clamp, translesion, transferase, DNA-directed D polymerase, DNA replication; HET: DNA; 1.9A {Escherichia coli} SCOP: d.240.1.1
Probab=99.42 E-value=9.2e-13 Score=115.55 Aligned_cols=97 Identities=19% Similarity=0.193 Sum_probs=90.6
Q ss_pred ccceeeeccCc-cCCHHHHHHHHHHHHHHHHHHHHHhCCCccEEE---EEEEEcCCceeEEEEecCCCCCCHHHHHHHHH
Q 009298 205 KSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLT---LKLKTASFEVRTRAVTLQKYISSSEDILKHAS 280 (538)
Q Consensus 205 KSIs~e~tF~~-~~d~e~L~~~L~~Lae~L~~RLr~~gl~~rtLt---L~Lr~~d~~~~srs~~L~~~t~~~~~L~~~a~ 280 (538)
..+|+|.||+. +.+.+++...|..|+++++.||++.+ .+++|+ |++++++|...+++.+ .|+++...|+..|.
T Consensus 5 ~~~g~e~Tf~~d~~~~~~l~~~l~~l~~~v~~rLr~~~-~~~tV~k~~vkir~~dF~~~trs~t--~pt~~~~~i~~~a~ 81 (115)
T 1unn_C 5 HHVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVK-PDLLIARQGVKLKFDDFQQTTQEHV--WPRLNKADLIATAR 81 (115)
T ss_dssp CEEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHC-TTCBCSEEEEEEEETTSCEEEEEEE--CSBCCHHHHHHHHH
T ss_pred CCCccceECCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCCeEEEeEEEEEECCCCeEEeccc--cCcCCHHHHHHHHH
Confidence 45789999998 68999999999999999999999999 999999 9999999999999988 68999999999999
Q ss_pred HHHHhhCC-CCEEEEEEEecCCCcC
Q 009298 281 VLLKAELP-VSLRLIGLRVTQFNED 304 (538)
Q Consensus 281 ~LL~~~lp-~~VR~IGV~ls~L~~~ 304 (538)
.||++.++ .+||++||++++|.+.
T Consensus 82 ~Ll~~~~~~~~vRllGV~ls~L~~~ 106 (115)
T 1unn_C 82 KTWDERRGGRGVRLVGLHVTLLDPQ 106 (115)
T ss_dssp HHHHHHCTTCCEEEEEEEEECCCCC
T ss_pred HHHHhhhcCCCEEEEEEEEeCCCCC
Confidence 99998864 7899999999999876
No 14
>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}
Probab=98.84 E-value=3.1e-10 Score=79.93 Aligned_cols=36 Identities=36% Similarity=0.600 Sum_probs=31.2
Q ss_pred ceeecCccccccccCCCCCcHhhhhccccchHHHHhhhh
Q 009298 445 FIWLDDYKCSLCGTEMPPSFIEERQEHSDFHLAERLQKE 483 (538)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (538)
+.|.+.|.|+.||..+|. .++|||.|||+|..||+.
T Consensus 4 ~~~~~~~~C~~C~~~i~~---~~~~EH~D~H~A~~Lq~s 39 (39)
T 2i5o_A 4 MAAEDQVPCEKCGSLVPV---WDMPEHMDYHFALELQKS 39 (39)
T ss_dssp --CCCEEECTTTCCEEEG---GGHHHHHHHHHHHHHTTC
T ss_pred CCcCCCcccccccCcCCc---ccccchhhHHHHHHHhcC
Confidence 567889999999999995 689999999999999973
No 15
>1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B
Probab=95.20 E-value=0.014 Score=46.27 Aligned_cols=51 Identities=16% Similarity=0.252 Sum_probs=41.5
Q ss_pred CcccccCCCHHHHHHHHhhcCCCchHHHHhch-HHHHHHcC--hhHHHHHHHhcc
Q 009298 140 PIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFS--HSTADFFLSVGL 191 (538)
Q Consensus 140 Pl~~L~GIG~kt~~kL~~~lGI~TlgDL~~lp-~~L~krFG--~~~~~~L~~~a~ 191 (538)
+|..|+||++.+..+|.. .||.|+.+|+..+ ..|....| ...+..+...++
T Consensus 8 ~l~~L~Gi~~~~~~kL~e-~Gi~TvedlA~~~~~eL~~i~gise~kA~~ii~aAr 61 (70)
T 1wcn_A 8 DLLNLEGVDRDLAFKLAA-RGVCTLEDLAEQGIDDLADIEGLTDEKAGALIMAAR 61 (70)
T ss_dssp HHHSSTTCCHHHHHHHHT-TTCCSHHHHHTSCHHHHHTSSSCCHHHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHH-cCCCcHHHHHcCCHHHHHHccCCCHHHHHHHHHHHH
Confidence 366788999999999997 9999999999998 78888777 555666655554
No 16
>3mab_A Uncharacterized protein; NYSGXRC, PSI-2, structural genomics; 1.42A {Listeria monocytogenes} PDB: 3bqt_A
Probab=94.41 E-value=0.046 Score=45.68 Aligned_cols=31 Identities=35% Similarity=0.433 Sum_probs=28.8
Q ss_pred CcccccCCCHHHHHHHHhhcCCCchHHHHhch
Q 009298 140 PIRKIGGIGKVTEHILRDVFGINTCEEMLQKG 171 (538)
Q Consensus 140 Pl~~L~GIG~kt~~kL~~~lGI~TlgDL~~lp 171 (538)
.|++||+||+++++.|.+ .||.|+.||..+.
T Consensus 5 ~L~dLPNig~~~e~~L~~-~GI~t~~~Lr~~G 35 (93)
T 3mab_A 5 NLSELPNIGKVLEQDLIK-AGIKTPVELKDVG 35 (93)
T ss_dssp CGGGSTTCCHHHHHHHHH-TTCCSHHHHHHHC
T ss_pred HHhhCCCCCHHHHHHHHH-cCCCCHHHHHhCC
Confidence 478999999999999998 9999999999885
No 17
>3bqs_A Uncharacterized protein; 10114F, NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.42A {Listeria monocytogenes str} PDB: 3bqt_A 3mab_A
Probab=93.91 E-value=0.049 Score=45.54 Aligned_cols=31 Identities=35% Similarity=0.433 Sum_probs=28.8
Q ss_pred CcccccCCCHHHHHHHHhhcCCCchHHHHhch
Q 009298 140 PIRKIGGIGKVTEHILRDVFGINTCEEMLQKG 171 (538)
Q Consensus 140 Pl~~L~GIG~kt~~kL~~~lGI~TlgDL~~lp 171 (538)
.|++||+||+++++.|.+ .||+|+.||....
T Consensus 5 ~L~~LPNiG~~~e~~L~~-vGI~s~e~L~~~G 35 (93)
T 3bqs_A 5 NLSELPNIGKVLEQDLIK-AGIKTPVELKDVG 35 (93)
T ss_dssp CGGGSTTCCHHHHHHHHH-TTCCSHHHHHHHH
T ss_pred HhhcCCCCCHHHHHHHHH-cCCCCHHHHHhCC
Confidence 488999999999999998 9999999999884
No 18
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=93.36 E-value=0.092 Score=40.48 Aligned_cols=49 Identities=12% Similarity=0.166 Sum_probs=41.3
Q ss_pred cccccCCCHHHHHHHHhhcCCCchHHHHhch-HHHHHHcChhH-HHHHHHhcc
Q 009298 141 IRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHST-ADFFLSVGL 191 (538)
Q Consensus 141 l~~L~GIG~kt~~kL~~~lGI~TlgDL~~lp-~~L~krFG~~~-~~~L~~~a~ 191 (538)
|.+|||||++..+.|-+ -..++.+|.+.+ ..|.+..|... +..+|....
T Consensus 6 L~~IpGIG~kr~~~LL~--~Fgs~~~i~~As~eeL~~vig~~~~A~~I~~~l~ 56 (63)
T 2a1j_A 6 LLKMPGVNAKNCRSLMH--HVKNIAELAALSQDELTSILGNAANAKQLYDFIH 56 (63)
T ss_dssp HHTSTTCCHHHHHHHHH--HCSSHHHHHTCCHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHcCCCCCHHHHHHHHH--HcCCHHHHHHCCHHHHHHHcCchHHHHHHHHHHh
Confidence 57889999999999876 455999999988 88999999888 888887654
No 19
>1z3e_B DNA-directed RNA polymerase alpha chain; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: a.60.3.1 PDB: 3ihq_B
Probab=92.32 E-value=0.18 Score=40.21 Aligned_cols=51 Identities=16% Similarity=0.253 Sum_probs=41.6
Q ss_pred hcCCCcccccCCCHHHHHHHHhhcCCCchHHHHhch-HHHHH--HcChhHHHHHHH
Q 009298 136 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCA--VFSHSTADFFLS 188 (538)
Q Consensus 136 L~~lPl~~L~GIG~kt~~kL~~~lGI~TlgDL~~lp-~~L~k--rFG~~~~~~L~~ 188 (538)
+...||.++ +++..+..-|++ .||+|++||.+.+ ..|.+ -||+.....+..
T Consensus 6 ~l~~~Ie~L-~LS~Ra~NcLkr-agI~Tv~dL~~~s~~dLlki~n~G~kSl~EI~~ 59 (73)
T 1z3e_B 6 VLEMTIEEL-DLSVRSYNCLKR-AGINTVQELANKTEEDMMKVRNLGRKSLEEVKA 59 (73)
T ss_dssp HHTCBGGGS-CCBHHHHHHHHH-TTCCBHHHHHTSCHHHHHTSTTCCHHHHHHHHH
T ss_pred hhcCcHHHh-CCCHHHHHHHHH-cCCCcHHHHHcCCHHHHHHcCCCCHHHHHHHHH
Confidence 345899999 899999999998 9999999999998 66664 589876665543
No 20
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=92.13 E-value=0.13 Score=42.08 Aligned_cols=49 Identities=12% Similarity=0.166 Sum_probs=41.6
Q ss_pred cccccCCCHHHHHHHHhhcCCCchHHHHhch-HHHHHHcChhH-HHHHHHhcc
Q 009298 141 IRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHST-ADFFLSVGL 191 (538)
Q Consensus 141 l~~L~GIG~kt~~kL~~~lGI~TlgDL~~lp-~~L~krFG~~~-~~~L~~~a~ 191 (538)
|..|||||++..+.|.+ -+.++.+|.+.+ ..|.+..|... +..+|....
T Consensus 20 L~~IpGIG~kr~~~LL~--~FgSl~~i~~AS~eEL~~vig~~~~A~~I~~~l~ 70 (84)
T 1z00_B 20 LLKMPGVNAKNCRSLMH--HVKNIAELAALSQDELTSILGNAANAKQLYDFIH 70 (84)
T ss_dssp HHTCSSCCHHHHHHHHH--HSSCHHHHHHSCHHHHHHHHSCHHHHHHHHHHHT
T ss_pred HHhCCCCCHHHHHHHHH--HcCCHHHHHHCCHHHHHHHhCchHHHHHHHHHHH
Confidence 56789999999999986 567999999998 88999999888 888887654
No 21
>3gfk_B DNA-directed RNA polymerase subunit alpha; protein-protein complex, cytoplasm, redox-active center, stress response, transcription; 2.30A {Bacillus subtilis} SCOP: a.60.3.1
Probab=88.68 E-value=0.35 Score=39.07 Aligned_cols=51 Identities=16% Similarity=0.225 Sum_probs=41.4
Q ss_pred hhcCCCcccccCCCHHHHHHHHhhcCCCchHHHHhch-HHHHH--HcChhHHHHHH
Q 009298 135 FISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCA--VFSHSTADFFL 187 (538)
Q Consensus 135 fL~~lPl~~L~GIG~kt~~kL~~~lGI~TlgDL~~lp-~~L~k--rFG~~~~~~L~ 187 (538)
-+-..||.+| +++..+..-|++ .||+|++||.+.+ ..|.+ -||+.....+.
T Consensus 12 ~~l~~~Ie~L-~LS~Ra~NcLk~-agI~Tv~dL~~~se~dLlki~n~G~kSl~EI~ 65 (79)
T 3gfk_B 12 KVLEMTIEEL-DLSVRSYNCLKR-AGINTVQELANKTEEDMMKVRNLGRKSLEEVK 65 (79)
T ss_dssp CGGGCBGGGS-CCBHHHHHHHHH-TTCCBHHHHTTCCHHHHTTSTTCHHHHHHHHH
T ss_pred HHhcCcHHHh-CCCHHHHHHHHH-hCCCCHHHHHhCCHHHHHHcCCCCHhHHHHHH
Confidence 4557899999 899999999998 9999999999998 55554 58877665553
No 22
>3k4g_A DNA-directed RNA polymerase subunit alpha; bacterial transcription regulation, DNA-directed RNA polymer nucleotidyltransferase; HET: MLY; 2.05A {Escherichia coli k-12} SCOP: a.60.3.1 PDB: 3n4m_B* 1lb2_B* 3n97_B* 1xs9_D
Probab=87.19 E-value=1 Score=36.85 Aligned_cols=50 Identities=10% Similarity=0.106 Sum_probs=41.1
Q ss_pred cCCCcccccCCCHHHHHHHHhhcCCCchHHHHhch-HHHH--HHcChhHHHHHHH
Q 009298 137 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLC--AVFSHSTADFFLS 188 (538)
Q Consensus 137 ~~lPl~~L~GIG~kt~~kL~~~lGI~TlgDL~~lp-~~L~--krFG~~~~~~L~~ 188 (538)
-..||.+| +++..+..-|++ .||+|++||.+.+ ..|. +-||+.....+..
T Consensus 10 l~~~I~~L-~LSvRa~NcLkr-agI~Tv~dL~~~se~dLlki~n~G~KSl~EI~~ 62 (86)
T 3k4g_A 10 LLRPVDDL-ELTVRSANCLXA-EAIHYIGDLVQRTEVELLXTPNLGXXSLTEIXD 62 (86)
T ss_dssp GGSBGGGG-CCCHHHHHHHHH-TTCCBHHHHHHSCHHHHHTSTTCCHHHHHHHHH
T ss_pred HhCcHHHh-CCCHHHHHHHHH-cCCCcHHHHHhCCHHHHhhccccCcccHHHHHH
Confidence 46789999 899999999998 9999999999998 5555 4689877666543
No 23
>1b22_A DNA repair protein RAD51; DNA binding, riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.60.4.1
Probab=86.54 E-value=0.27 Score=42.48 Aligned_cols=53 Identities=23% Similarity=0.286 Sum_probs=42.1
Q ss_pred CCCccccc--CCCHHHHHHHHhhcCCCchHHHHhch-HHHHHHcC--hhHHHHHHHhcc
Q 009298 138 SLPIRKIG--GIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFS--HSTADFFLSVGL 191 (538)
Q Consensus 138 ~lPl~~L~--GIG~kt~~kL~~~lGI~TlgDL~~lp-~~L~krFG--~~~~~~L~~~a~ 191 (538)
++||.+|+ |||+.+.++|.. -|++|+.+|+..+ ..|.+.=| ...+..+...++
T Consensus 22 ~~~I~~L~~~GIg~~~i~kL~e-AG~~Tve~va~a~~~eL~~i~GIse~ka~kIi~aA~ 79 (114)
T 1b22_A 22 PQPISRLEQCGINANDVKKLEE-AGFHTVEAVAYAPKKELINIKGISEAKADKILAEAA 79 (114)
T ss_dssp CCCHHHHHHTTCSHHHHHHHHT-TCCSSGGGBTSSBHHHHHTTTTCSTTHHHHHHHHHH
T ss_pred CccHHHHHhcCCCHHHHHHHHH-cCcCcHHHHHhCCHHHHHHccCCCHHHHHHHHHHHH
Confidence 46889998 999999999998 8999999999887 77776544 555666655554
No 24
>1ci4_A Protein (barrier-TO-autointegration factor (BAF) ); DNA binding protein, retroviral integration, preintegration complex; 1.90A {Homo sapiens} SCOP: a.60.5.1 PDB: 1qck_A 2bzf_A 2ezx_A 2ezy_A 2ezz_A 2odg_A
Probab=86.31 E-value=0.45 Score=39.11 Aligned_cols=33 Identities=24% Similarity=0.472 Sum_probs=27.9
Q ss_pred hcCCCcccccCCCHHHHHHHHhhcCCCchHHHHh
Q 009298 136 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQ 169 (538)
Q Consensus 136 L~~lPl~~L~GIG~kt~~kL~~~lGI~TlgDL~~ 169 (538)
+..-||++|||||++++++|.+ -|+.+..+|..
T Consensus 15 mgeK~V~evpGIG~~~~~~L~~-~Gf~kAy~lLG 47 (89)
T 1ci4_A 15 MGEKPVGSLAGIGEVLGKKLEE-RGFDKAYVVLG 47 (89)
T ss_dssp CTTCCGGGSTTCCHHHHHHHHH-TTCCSHHHHHH
T ss_pred CCCCCcccCCCcCHHHHHHHHH-cCccHHHHHHH
Confidence 3346899999999999999998 89999777643
No 25
>1coo_A RNA polymerase alpha subunit; transcription regulation, nucleotidyl transferase; NMR {Escherichia coli} SCOP: a.60.3.1 PDB: 2jzb_A
Probab=85.55 E-value=0.65 Score=39.05 Aligned_cols=48 Identities=10% Similarity=0.132 Sum_probs=39.9
Q ss_pred CCCcccccCCCHHHHHHHHhhcCCCchHHHHhch-HHHHH--HcChhHHHHHH
Q 009298 138 SLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCA--VFSHSTADFFL 187 (538)
Q Consensus 138 ~lPl~~L~GIG~kt~~kL~~~lGI~TlgDL~~lp-~~L~k--rFG~~~~~~L~ 187 (538)
..||..| +++..+..-|++ .||+|++||.+.+ ..|.+ -||+.....+.
T Consensus 23 ~~~Ie~L-~LSvRs~NcLkr-agI~Tv~dL~~~se~dLlki~n~G~KSl~EI~ 73 (98)
T 1coo_A 23 LRPVDDL-ELTVRSANCLKA-EAIHYIGDLVQRTEVELLKTPNLGKKSLTEIK 73 (98)
T ss_dssp HSBGGGG-TCCTTTHHHHHT-TTCCBHHHHHTSCHHHHTTSTTCCHHHHHHHH
T ss_pred cCcHHHh-CCCHHHHHHHHH-cCCCcHHHHHhCCHHHHHhcCCCCHHHHHHHH
Confidence 3899999 899999999998 8999999999998 66654 59987665554
No 26
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=83.00 E-value=0.86 Score=36.12 Aligned_cols=49 Identities=16% Similarity=0.287 Sum_probs=36.4
Q ss_pred CCCcccccCCCHHHHHHHHhhcCCCchHHHHhch-HHHHHH--cChhHHHHHHH
Q 009298 138 SLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAV--FSHSTADFFLS 188 (538)
Q Consensus 138 ~lPl~~L~GIG~kt~~kL~~~lGI~TlgDL~~lp-~~L~kr--FG~~~~~~L~~ 188 (538)
...|..+||||++++++|-+.+| ++.++...+ ..|.+. +|...+..+..
T Consensus 23 ~~~L~~I~gIG~~~A~~Ll~~fg--sl~~l~~a~~eeL~~i~GIG~~~a~~I~~ 74 (78)
T 1kft_A 23 TSSLETIEGVGPKRRQMLLKYMG--GLQGLRNASVEEIAKVPGISQGLAEKIFW 74 (78)
T ss_dssp CCGGGGCTTCSSSHHHHHHHHHS--CHHHHHHCCHHHHTTSSSTTSHHHHHHHH
T ss_pred HHHHhcCCCCCHHHHHHHHHHcC--CHHHHHHCCHHHHHHCCCCCHHHHHHHHH
Confidence 44578999999999999887555 688888776 677766 66666666543
No 27
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=81.63 E-value=1.6 Score=35.62 Aligned_cols=49 Identities=16% Similarity=0.268 Sum_probs=37.3
Q ss_pred CcccccCCCHHHHHHHHhhcCCCchHHHHhch-HHHHHH--cChhHHHHHHHhc
Q 009298 140 PIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAV--FSHSTADFFLSVG 190 (538)
Q Consensus 140 Pl~~L~GIG~kt~~kL~~~lGI~TlgDL~~lp-~~L~kr--FG~~~~~~L~~~a 190 (538)
.|..|||||++++++|-+.+| ++.+|...+ ..|.+. +|...+..+....
T Consensus 33 ~L~~IpgIG~~~A~~Ll~~fg--s~~~l~~as~~eL~~i~GIG~~~a~~I~~~l 84 (91)
T 2a1j_B 33 CLTTVKSVNKTDSQTLLTTFG--SLEQLIAASREDLALCPGLGPQKARRLFDVL 84 (91)
T ss_dssp HHTTSTTCCHHHHHHHHHHHS--SHHHHHSCCHHHHHTSSSCCSHHHHHHHHHH
T ss_pred HHHcCCCCCHHHHHHHHHHCC--CHHHHHhCCHHHHHhCCCCCHHHHHHHHHHH
Confidence 467889999999999887555 788888776 777776 7777777775543
No 28
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=81.37 E-value=1.8 Score=35.01 Aligned_cols=49 Identities=16% Similarity=0.268 Sum_probs=37.7
Q ss_pred CcccccCCCHHHHHHHHhhcCCCchHHHHhch-HHHHHH--cChhHHHHHHHhc
Q 009298 140 PIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAV--FSHSTADFFLSVG 190 (538)
Q Consensus 140 Pl~~L~GIG~kt~~kL~~~lGI~TlgDL~~lp-~~L~kr--FG~~~~~~L~~~a 190 (538)
.|..+||||++++++|-+.+| ++.++...+ ..|.+. +|...+..+....
T Consensus 20 ~L~~IpgIG~~~A~~Ll~~fg--sl~~l~~a~~~eL~~i~GIG~~~a~~I~~~l 71 (89)
T 1z00_A 20 CLTTVKSVNKTDSQTLLTTFG--SLEQLIAASREDLALCPGLGPQKARRLFDVL 71 (89)
T ss_dssp HHTTSSSCCHHHHHHHHHHTC--BHHHHHHCCHHHHHTSTTCCHHHHHHHHHHH
T ss_pred HHHcCCCCCHHHHHHHHHHCC--CHHHHHhCCHHHHHhCCCCCHHHHHHHHHHH
Confidence 467889999999999887455 788888876 777776 7877777775543
No 29
>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ...
Probab=79.05 E-value=0.39 Score=46.89 Aligned_cols=49 Identities=22% Similarity=0.338 Sum_probs=0.0
Q ss_pred CCCcccccCCCHHHHHHHHhhcCCCchHHHHhch-HHHHHH--cChhHHHHHH
Q 009298 138 SLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAV--FSHSTADFFL 187 (538)
Q Consensus 138 ~lPl~~L~GIG~kt~~kL~~~lGI~TlgDL~~lp-~~L~kr--FG~~~~~~L~ 187 (538)
...|..|+|||++++..|.. .|+.++.+|...+ ..|.+. ||...++.++
T Consensus 14 ~~~L~~IpGIGpk~a~~Ll~-~gf~sve~L~~a~~~eL~~v~GIG~ktAe~I~ 65 (241)
T 1vq8_Y 14 YTELTDISGVGPSKAESLRE-AGFESVEDVRGADQSALADVSGIGNALAARIK 65 (241)
T ss_dssp -----------------------------------------------------
T ss_pred hhHHhcCCCCCHHHHHHHHH-cCCCCHHHHHhCCHHHHHhccCCCHHHHHHHH
Confidence 35788999999999999987 6999999997766 677776 7777666664
No 30
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=78.19 E-value=1.8 Score=44.26 Aligned_cols=42 Identities=26% Similarity=0.292 Sum_probs=36.5
Q ss_pred CCCcccccCCCHHHHHHHHhhcCCCchHHHHhch-HHHHHHcCh
Q 009298 138 SLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSH 180 (538)
Q Consensus 138 ~lPl~~L~GIG~kt~~kL~~~lGI~TlgDL~~lp-~~L~krFG~ 180 (538)
..+|.+||||++.+.++|++ .|++|+.+++..+ ..|.+.-|.
T Consensus 34 ~~~l~~l~Gi~~~~~~kL~~-ag~~t~~~~~~~~~~~L~~~~~~ 76 (349)
T 1pzn_A 34 IRSIEDLPGVGPATAEKLRE-AGYDTLEAIAVASPIELKEVAGI 76 (349)
T ss_dssp -CCSSCCTTCCHHHHHHHHT-TTCCSHHHHHTCCHHHHHHHHCC
T ss_pred cccHHHcCCCCHHHHHHHHH-cCCCcHHHHHhCCHHHHHhhcCC
Confidence 45899999999999999998 8999999999987 788877663
No 31
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=77.17 E-value=2.1 Score=41.19 Aligned_cols=49 Identities=20% Similarity=0.354 Sum_probs=40.3
Q ss_pred CCcccccCCCHHHHHHHHhhcCCCchHHHHhch-HHHHHHcCh-hHHHHHHHh
Q 009298 139 LPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSH-STADFFLSV 189 (538)
Q Consensus 139 lPl~~L~GIG~kt~~kL~~~lGI~TlgDL~~lp-~~L~krFG~-~~~~~L~~~ 189 (538)
-+|..|||||+++++.|.+.+| ++..|.+.+ +.|.+.+|. ..++.++++
T Consensus 168 s~LdgIpGIG~k~ak~Ll~~Fg--Sl~~i~~As~EeL~~VIG~~~~A~~I~~~ 218 (220)
T 2nrt_A 168 SVLDNVPGIGPIRKKKLIEHFG--SLENIRSASLEEIARVIGSTEIARRVLDI 218 (220)
T ss_dssp HHHTTSTTCCHHHHHHHHHHHC--SHHHHHTSCHHHHHHHHTCHHHHHHHHHH
T ss_pred ccccCCCCcCHHHHHHHHHHcC--CHHHHHhCCHHHHHHHhChHHHHHHHHHH
Confidence 4688999999999999987666 788888877 778877998 888877654
No 32
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=74.21 E-value=2 Score=42.88 Aligned_cols=52 Identities=15% Similarity=0.107 Sum_probs=38.7
Q ss_pred CCcccccCCCHHHHHHHHhhcCCCchHHHHhch-HHHHHHcChh--HHHHHHHhcc
Q 009298 139 LPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHS--TADFFLSVGL 191 (538)
Q Consensus 139 lPl~~L~GIG~kt~~kL~~~lGI~TlgDL~~lp-~~L~krFG~~--~~~~L~~~a~ 191 (538)
.+|.+|+||++.++++|++ -||.|+.|++..+ ..|.+.-|.. .+..+...++
T Consensus 3 ~~~~~l~gi~~~~~~kL~~-~gi~t~~~~~~~~~~~L~~~~gis~~~a~~~i~~a~ 57 (322)
T 2i1q_A 3 DNLTDLPGVGPSTAEKLVE-AGYIDFMKIATATVGELTDIEGISEKAAAKMIMGAR 57 (322)
T ss_dssp --CTTSTTCCHHHHHHHHH-HTCCSHHHHHTCCHHHHHTSTTCCHHHHHHHHHHHH
T ss_pred ccHhhcCCCCHHHHHHHHH-cCCCcHHHHHhCCHHHHHHhhCcCHHHHHHHHHHHH
Confidence 3688899999999999997 8999999999987 7787766633 3333434443
No 33
>2kz3_A Putative uncharacterized protein RAD51L3; RAD51D, homologous recombination, unknown function; NMR {Homo sapiens}
Probab=72.90 E-value=4 Score=33.07 Aligned_cols=43 Identities=16% Similarity=0.204 Sum_probs=36.6
Q ss_pred CCCcccccCCCHHHHHHHHhhcCCCchHHHHhch-HHHHHHcChh
Q 009298 138 SLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHS 181 (538)
Q Consensus 138 ~lPl~~L~GIG~kt~~kL~~~lGI~TlgDL~~lp-~~L~krFG~~ 181 (538)
.+.++..||+.....+.|++ -||.|+.|+...+ ..|.+..|..
T Consensus 3 ~l~~~~~p~Lse~~~~~L~~-~~I~Tv~Dfl~~d~~eL~~~~~ls 46 (83)
T 2kz3_A 3 VLRVGLCPGLTEEMIQLLRS-HRIKTVVDLVSADLEEVAQKCGLS 46 (83)
T ss_dssp CCCTTSSTTCCHHHHHHHHH-TTCCCHHHHTTSCHHHHHHHHTCC
T ss_pred ccccccCCCCCHHHHHHHHH-CCCCCHHHHHhCCHHHHHHHhCCC
Confidence 45566779999999999997 9999999999997 7888888754
No 34
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=71.89 E-value=2 Score=43.88 Aligned_cols=28 Identities=29% Similarity=0.538 Sum_probs=25.6
Q ss_pred cccccCCCHHHHHHHHhhcCCCchHHHHh
Q 009298 141 IRKIGGIGKVTEHILRDVFGINTCEEMLQ 169 (538)
Q Consensus 141 l~~L~GIG~kt~~kL~~~lGI~TlgDL~~ 169 (538)
+..|||||++++++|.+ -||+|+.||..
T Consensus 100 l~~V~GiGpk~a~~l~~-~Gi~tledL~~ 127 (335)
T 2fmp_A 100 LTRVSGIGPSAARKFVD-EGIKTLEDLRK 127 (335)
T ss_dssp HTTSTTCCHHHHHHHHH-TTCCSHHHHHT
T ss_pred HhCCCCCCHHHHHHHHH-cCCCCHHHHHH
Confidence 57889999999999998 69999999976
No 35
>3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular model mRNA splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A
Probab=71.81 E-value=5 Score=40.44 Aligned_cols=52 Identities=10% Similarity=0.098 Sum_probs=40.7
Q ss_pred CCcccccCCCHHHHHHHHhhcCCCchHHHHhch-HHHHHHcC--hhHHHHHHHhcc
Q 009298 139 LPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFS--HSTADFFLSVGL 191 (538)
Q Consensus 139 lPl~~L~GIG~kt~~kL~~~lGI~TlgDL~~lp-~~L~krFG--~~~~~~L~~~a~ 191 (538)
.|+..|||||+...++|.+ .|+.|+.||.+++ ..+.+.+| ...+..++..+.
T Consensus 157 ~pL~Qlp~i~~~~~~~l~~-~~i~s~~~l~~~~~~e~~~ll~~~~~~~~~v~~~~~ 211 (328)
T 3im1_A 157 NPLRQIPHFNNKILEKCKE-INVETVYDIMALEDEERDEILTLTDSQLAQVAAFVN 211 (328)
T ss_dssp CGGGGSTTCCHHHHHHHHH-TTCCSHHHHHHSCHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred CceeCCCCCCHHHHHHHHh-CCCCCHHHHhcCCHHHHHhHhCCCHHHHHHHHHHHH
Confidence 6899999999999999997 8999999999987 67777655 334455544443
No 36
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=71.73 E-value=2.3 Score=47.28 Aligned_cols=48 Identities=15% Similarity=0.344 Sum_probs=41.1
Q ss_pred CCcccccCCCHHHHHHHHhhcCCCchHHHHhch-HHHHHHcChhHHHHHHH
Q 009298 139 LPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLS 188 (538)
Q Consensus 139 lPl~~L~GIG~kt~~kL~~~lGI~TlgDL~~lp-~~L~krFG~~~~~~L~~ 188 (538)
+||..|||||+..+++|.+ .|++|+.||+ .+ ..|.+.+|+..+..+++
T Consensus 657 ~~L~qlp~i~~~rar~L~~-~g~~s~~~l~-~~~~~l~~~l~~~~~~~i~~ 705 (715)
T 2va8_A 657 LELVQISGVGRKRARLLYN-NGIKELGDVV-MNPDKVKNLLGQKLGEKVVQ 705 (715)
T ss_dssp HHHHTSTTCCHHHHHHHHH-TTCCSHHHHH-HCHHHHHHHHCHHHHHHHHH
T ss_pred cchhhCCCCCHHHHHHHHH-cCCCCHHHHh-CCHHHHHHHhChhHHHHHHH
Confidence 5888999999999999997 8999999999 76 78888888666666654
No 37
>2q0z_X Protein Pro2281; SEC63, SEC, NESG, HR1979, structural genomics, translocase, northeast structural genomics consortium, PSI-2; 2.00A {Homo sapiens} SCOP: a.289.1.1 b.1.18.22
Probab=69.66 E-value=6.3 Score=39.94 Aligned_cols=52 Identities=8% Similarity=0.008 Sum_probs=40.5
Q ss_pred CCcccccCCCHHHHHHHHhhcCCCchHHHHhch-HHHHHHcC--hhHHHHHHHhcc
Q 009298 139 LPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFS--HSTADFFLSVGL 191 (538)
Q Consensus 139 lPl~~L~GIG~kt~~kL~~~lGI~TlgDL~~lp-~~L~krFG--~~~~~~L~~~a~ 191 (538)
.|+..|||||+...++|.+ .|+.|+.||.+++ ..+...+| ...+..+...+.
T Consensus 161 ~pL~Qlp~i~~~~~~~l~~-~~i~s~~~l~~~~~~e~~~ll~l~~~~~~~i~~~~~ 215 (339)
T 2q0z_X 161 SYLKQLPHFTSEHIKRCTD-KGVESVFDIMEMEDEERNALLQLTDSQIADVARFCN 215 (339)
T ss_dssp CGGGGSTTCCHHHHHHHHH-TTCCSHHHHHHSCHHHHHHHHCCCHHHHHHHHHHHT
T ss_pred CceecCCCCCHHHHHHHHh-cCCCCHHHHHhCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 6899999999999999997 8999999999997 66666655 334444544443
No 38
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=68.72 E-value=1.7 Score=49.31 Aligned_cols=31 Identities=26% Similarity=0.458 Sum_probs=28.4
Q ss_pred CCcccccCCCHHHHHHHHhhcCCCchHHHHhc
Q 009298 139 LPIRKIGGIGKVTEHILRDVFGINTCEEMLQK 170 (538)
Q Consensus 139 lPl~~L~GIG~kt~~kL~~~lGI~TlgDL~~l 170 (538)
.||+.|+|||++++++|.+ +||.|++||+..
T Consensus 115 ~~~~~l~gvg~~~~~~l~~-lgi~~~~dll~~ 145 (780)
T 1gm5_A 115 TDIQYAKGVGPNRKKKLKK-LGIETLRDLLEF 145 (780)
T ss_dssp CCSSSSSSCCHHHHHHHHT-TTCCSSGGGTSC
T ss_pred CCchhcCCCCHHHHHHHHH-CCCCcHHHHHhh
Confidence 4899999999999999997 999999999753
No 39
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=68.26 E-value=2.6 Score=42.96 Aligned_cols=28 Identities=21% Similarity=0.354 Sum_probs=25.1
Q ss_pred ccccCCCHHHHHHHHhhcCCCchHHHHhc
Q 009298 142 RKIGGIGKVTEHILRDVFGINTCEEMLQK 170 (538)
Q Consensus 142 ~~L~GIG~kt~~kL~~~lGI~TlgDL~~l 170 (538)
..|||||++++++|.+ .||+|+.||...
T Consensus 99 ~~v~GiG~k~a~~l~~-~Gi~tledL~~a 126 (335)
T 2bcq_A 99 SNIWGAGTKTAQMWYQ-QGFRSLEDIRSQ 126 (335)
T ss_dssp HTSTTCCHHHHHHHHH-TTCCSHHHHHHH
T ss_pred hcCCCcCHHHHHHHHH-cCCCCHHHHHHH
Confidence 5889999999999998 699999999753
No 40
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=66.96 E-value=4.2 Score=45.17 Aligned_cols=52 Identities=19% Similarity=0.312 Sum_probs=43.7
Q ss_pred CCcccccCCCHHHHHHHHhhcCCCchHHHHhchHHHHHHcChhHHHHHHHhcc
Q 009298 139 LPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGL 191 (538)
Q Consensus 139 lPl~~L~GIG~kt~~kL~~~lGI~TlgDL~~lp~~L~krFG~~~~~~L~~~a~ 191 (538)
+|+..|||||+..+++|.+ .|+.|+.||++.+..|.+.+|+..+..+.+.+.
T Consensus 632 ~~L~qlp~v~~~~ar~l~~-~g~~s~~~l~~~~~~l~~ll~~~~~~~i~~~~~ 683 (702)
T 2p6r_A 632 LELVRIRHIGRVRARKLYN-AGIRNAEDIVRHREKVASLIGRGIAERVVEGIS 683 (702)
T ss_dssp HHHHTSTTCCHHHHHHHHT-TTCCSHHHHHHTHHHHHHHHCHHHHHHHHHHHH
T ss_pred HhhhcCCCCCHHHHHHHHH-cCCCCHHHHHhhhHHHHHHhChhHHHHHHHhcC
Confidence 5788999999999999997 899999999988877778888776777665544
No 41
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=66.95 E-value=2.6 Score=43.45 Aligned_cols=28 Identities=21% Similarity=0.337 Sum_probs=25.3
Q ss_pred cccccCCCHHHHHHHHhhcCCCchHHHHh
Q 009298 141 IRKIGGIGKVTEHILRDVFGINTCEEMLQ 169 (538)
Q Consensus 141 l~~L~GIG~kt~~kL~~~lGI~TlgDL~~ 169 (538)
+..|||||++++++|.+ -||+|+.||..
T Consensus 104 l~~I~GvG~kta~~l~~-~Gi~tledL~~ 131 (360)
T 2ihm_A 104 FTQVFGVGVKTANRWYQ-EGLRTLDELRE 131 (360)
T ss_dssp HHTSTTCCHHHHHHHHH-TTCCSHHHHHT
T ss_pred HhCCCCCCHHHHHHHHH-cCCCCHHHHHh
Confidence 57889999999999998 69999999974
No 42
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=66.49 E-value=4.1 Score=31.29 Aligned_cols=48 Identities=15% Similarity=0.162 Sum_probs=35.3
Q ss_pred CcccccCCCHHHHHHHHhhcCCCchHHHHhch-HHHHHH--cChhHHHHHHHh
Q 009298 140 PIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAV--FSHSTADFFLSV 189 (538)
Q Consensus 140 Pl~~L~GIG~kt~~kL~~~lGI~TlgDL~~lp-~~L~kr--FG~~~~~~L~~~ 189 (538)
.|..+||||+++++.|-..+ .++.+|...+ ..|.+. +|...+..+...
T Consensus 15 ~L~~i~giG~~~a~~Ll~~f--gs~~~l~~a~~~~L~~i~Gig~~~a~~i~~~ 65 (75)
T 1x2i_A 15 IVEGLPHVSATLARRLLKHF--GSVERVFTASVAELMKVEGIGEKIAKEIRRV 65 (75)
T ss_dssp HHTTSTTCCHHHHHHHHHHH--CSHHHHHHCCHHHHTTSTTCCHHHHHHHHHH
T ss_pred HHcCCCCCCHHHHHHHHHHc--CCHHHHHhCCHHHHhcCCCCCHHHHHHHHHH
Confidence 36789999999999998634 5678887766 667665 677777766544
No 43
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=66.25 E-value=4.7 Score=44.86 Aligned_cols=53 Identities=15% Similarity=0.223 Sum_probs=42.6
Q ss_pred CCCcccccCCCHHHHHHHHhhcCCCchHHHHhch-HHHHHH--cChhHHHHHHHhcc
Q 009298 138 SLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAV--FSHSTADFFLSVGL 191 (538)
Q Consensus 138 ~lPl~~L~GIG~kt~~kL~~~lGI~TlgDL~~lp-~~L~kr--FG~~~~~~L~~~a~ 191 (538)
.+||..|||||+..+++|.+ .|++|+.||++.+ ..+.+. +|......+...+.
T Consensus 645 ~~~L~qlp~v~~~rar~L~~-~G~~s~~dl~~~~~~~l~~~~~~~~~i~~~~~~~~~ 700 (720)
T 2zj8_A 645 LIPLMQLPLVGRRRARALYN-SGFRSIEDISQARPEELLKIEGIGVKTVEAIFKFLG 700 (720)
T ss_dssp GGGGTTSTTCCHHHHHHHHT-TTCCSHHHHHTCCHHHHHTSTTCCHHHHHHHHHHHC
T ss_pred chhhhhCCCCCHHHHHHHHH-cCCCCHHHHHhCCHHHHHHhHhHHHHHHHHHHHhcc
Confidence 36899999999999999997 9999999999987 666655 77766665544444
No 44
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=65.47 E-value=2.9 Score=43.41 Aligned_cols=29 Identities=17% Similarity=0.216 Sum_probs=25.6
Q ss_pred CcccccCCCHHHHHHHHhhcCCCchHHHHh
Q 009298 140 PIRKIGGIGKVTEHILRDVFGINTCEEMLQ 169 (538)
Q Consensus 140 Pl~~L~GIG~kt~~kL~~~lGI~TlgDL~~ 169 (538)
.+..|||||++++++|-+ .||+|+.||..
T Consensus 122 ~l~~I~GvGpk~a~~ly~-~Gi~tledL~~ 150 (381)
T 1jms_A 122 LFTSVFGVGLKTAEKWFR-MGFRTLSKIQS 150 (381)
T ss_dssp HHHTSTTCCHHHHHHHHH-TTCCSHHHHHH
T ss_pred HHHccCCCCHHHHHHHHH-cCCCcHHHHHh
Confidence 356789999999999998 69999999974
No 45
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=64.26 E-value=1.4 Score=44.28 Aligned_cols=41 Identities=17% Similarity=0.178 Sum_probs=0.0
Q ss_pred CCcccccCCCHHHHHHHHhhcCCCchHHHHhch-HHHHHHcCh
Q 009298 139 LPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSH 180 (538)
Q Consensus 139 lPl~~L~GIG~kt~~kL~~~lGI~TlgDL~~lp-~~L~krFG~ 180 (538)
.||..||||++.+.++|++ .|+.|+.+++..+ ..|.+.-|.
T Consensus 12 ~~~~~l~g~~~~~~~~l~~-~g~~t~~~~~~~~~~~l~~~~g~ 53 (324)
T 2z43_A 12 KTINDLPGISQTVINKLIE-AGYSSLETLAVASPQDLSVAAGI 53 (324)
T ss_dssp -------------------------------------------
T ss_pred ccHHHcCCCCHHHHHHHHH-cCCCcHHHHHcCCHHHHHHhhCC
Confidence 4899999999999999997 8999999999887 667766663
No 46
>2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} SCOP: a.60.2.7
Probab=57.70 E-value=5 Score=31.27 Aligned_cols=31 Identities=19% Similarity=0.268 Sum_probs=24.0
Q ss_pred cccccCCCHHHHHHHHhhcCCCchHHHHhch
Q 009298 141 IRKIGGIGKVTEHILRDVFGINTCEEMLQKG 171 (538)
Q Consensus 141 l~~L~GIG~kt~~kL~~~lGI~TlgDL~~lp 171 (538)
+..|||||+++++++-+..+..++.||.+.+
T Consensus 29 L~~ipGIG~~~A~~Il~~r~~~s~~eL~~v~ 59 (75)
T 2duy_A 29 LMALPGIGPVLARRIVEGRPYARVEDLLKVK 59 (75)
T ss_dssp HTTSTTCCHHHHHHHHHTCCCSSGGGGGGST
T ss_pred HHhCCCCCHHHHHHHHHHcccCCHHHHHhCC
Confidence 5667999999999988756777777776553
No 47
>3tvk_A DGC, diguanylate cyclase YDEH; putative zinc sensor, C-DI-GMP, transfe; HET: C2E; 1.80A {Escherichia coli}
Probab=53.65 E-value=25 Score=32.11 Aligned_cols=61 Identities=11% Similarity=0.091 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHhcCC---CeEeeCccEEEEEcCccchhcCCCHHHHHHHHHHHHHHH--------hCCceEEEec
Q 009298 41 YYSDLTRKVFCKYDP---NFMAASLDEAYLDITEVCRERGISGIEIAEELRTSVYEE--------AGLTCSAGVA 104 (538)
Q Consensus 41 ~~s~~l~~il~~~sp---~Ve~~SiDEafLDlT~~~~l~g~~~~~la~~IR~~I~~~--------~Glt~S~GIA 104 (538)
.++..+++.+....+ .|-.++-||..+=+.+.... ....++.+|++.|... ..+++|+||+
T Consensus 58 ~vL~~va~~L~~~~~~~~~v~R~gGDEF~ill~~~~~~---~~~~~~~~i~~~i~~~~~~~~~~~~~vt~SiGia 129 (179)
T 3tvk_A 58 VVLRTLATYLASWTRDYETVYRYGGEEFIIIVKAANDE---EACRAGVRICQLVDNHAITHSEGHINITVTAGVS 129 (179)
T ss_dssp HHHHHHHHHHHHTSCTTSCEEECSSSEEEEEEEESSHH---HHHHHHHHHHHHHHHSCEEETTEEECCCEEEEEE
T ss_pred HHHHHHHHHhHhcCCcccEEEEccCCEEEEEcCCCCHH---HHHHHHHHHHHHHHcCCcccCCceEEEEEEEEEE
Confidence 467777777877653 57778889976655433221 4567888999988542 2589999998
No 48
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=52.67 E-value=10 Score=39.47 Aligned_cols=46 Identities=26% Similarity=0.233 Sum_probs=38.6
Q ss_pred hhcCCCcccccC--CCHHHHHHHHhhcCCCchHHHHhch-HHHHHHcChh
Q 009298 135 FISSLPIRKIGG--IGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHS 181 (538)
Q Consensus 135 fL~~lPl~~L~G--IG~kt~~kL~~~lGI~TlgDL~~lp-~~L~krFG~~ 181 (538)
.....||.+|.+ |++.+.++|++ .|+.|+.+|+..+ ..|.+..|..
T Consensus 77 ~~~~~~~~~l~~~gi~~~~~~~L~~-ag~~tv~~~~~~~~~~L~~~~gis 125 (400)
T 3lda_A 77 LGSFVPIEKLQVNGITMADVKKLRE-SGLHTAEAVAYAPRKDLLEIKGIS 125 (400)
T ss_dssp -CCSCBGGGGCCTTCCHHHHHHHHH-TTCCBHHHHHHSCHHHHHTSTTCC
T ss_pred ccCccCHHHHHhCCCCHHHHHHHHH-cCCCcHHHHHhCCHHHHHHHhCCC
Confidence 345678999986 88999999998 8999999999887 7888888754
No 49
>1faq_A RAF-1; transferase, serine/threonine-protein kinase, proto- oncogene, zinc, ATP-binding, phorbol-ester binding; NMR {Homo sapiens} SCOP: g.49.1.1 PDB: 1far_A
Probab=43.93 E-value=5.8 Score=28.55 Aligned_cols=17 Identities=24% Similarity=0.999 Sum_probs=13.9
Q ss_pred CcceeecCccccccccCC
Q 009298 443 DQFIWLDDYKCSLCGTEM 460 (538)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~ 460 (538)
..++| .||+|..||.-.
T Consensus 21 ~~~l~-qG~~C~~C~~~~ 37 (52)
T 1faq_A 21 QKFLL-NGFRCQTCGYKF 37 (52)
T ss_dssp SSEEC-SEEECTTTTCCB
T ss_pred ccccc-cCCEeCCCCCeE
Confidence 45789 999999999653
No 50
>3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus}
Probab=43.33 E-value=5 Score=38.66 Aligned_cols=49 Identities=14% Similarity=0.227 Sum_probs=0.0
Q ss_pred CCCcccccCCCHHHHHHHHhhcCCCchHHHHhch-HHHHHH-cChhHHHHHHH
Q 009298 138 SLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAV-FSHSTADFFLS 188 (538)
Q Consensus 138 ~lPl~~L~GIG~kt~~kL~~~lGI~TlgDL~~lp-~~L~kr-FG~~~~~~L~~ 188 (538)
..+|..|||||++++++|.+. ..++..|.+.+ ..|.+. +|...++.+++
T Consensus 172 ~s~L~~IpGIG~k~ak~Ll~~--FGSl~~i~~As~eeL~~VGIG~~~A~~I~~ 222 (226)
T 3c65_A 172 HSVLDDIPGVGEKRKKALLNY--FGSVKKMKEATVEELQRANIPRAVAEKIYE 222 (226)
T ss_dssp -----------------------------------------------------
T ss_pred cccccccCCCCHHHHHHHHHH--hCCHHHHHhCCHHHHHHcCCCHHHHHHHHH
Confidence 457899999999999999873 44677776665 667776 55555555543
No 51
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=41.67 E-value=17 Score=34.17 Aligned_cols=47 Identities=19% Similarity=0.384 Sum_probs=36.1
Q ss_pred cccccCCCHHHHHHHHhhcCCCchHHHHhch-HHHHHH--cChhHHHHHHHh
Q 009298 141 IRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAV--FSHSTADFFLSV 189 (538)
Q Consensus 141 l~~L~GIG~kt~~kL~~~lGI~TlgDL~~lp-~~L~kr--FG~~~~~~L~~~ 189 (538)
+..+||||++++..|.+.+| ++.++.+.+ ..|.+. +|+..+..++..
T Consensus 164 L~~i~gVg~~~a~~Ll~~fg--s~~~l~~a~~e~L~~v~GiG~~~a~~i~~~ 213 (219)
T 2bgw_A 164 LQSFPGIGRRTAERILERFG--SLERFFTASKAEISKVEGIGEKRAEEIKKI 213 (219)
T ss_dssp HHTSTTCCHHHHHHHHHHHS--SHHHHTTCCHHHHHHSTTCCHHHHHHHHHH
T ss_pred HhcCCCCCHHHHHHHHHHcC--CHHHHHhCCHHHHhhCCCCCHHHHHHHHHH
Confidence 56899999999999987444 688887776 677776 777777777654
No 52
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=40.89 E-value=16 Score=34.09 Aligned_cols=53 Identities=15% Similarity=0.157 Sum_probs=36.9
Q ss_pred CcccccCCCHHHHHHHHhhcCCCchHH-HHhch-HHHHHH--cChhHHHHHHHhccC
Q 009298 140 PIRKIGGIGKVTEHILRDVFGINTCEE-MLQKG-SLLCAV--FSHSTADFFLSVGLG 192 (538)
Q Consensus 140 Pl~~L~GIG~kt~~kL~~~lGI~TlgD-L~~lp-~~L~kr--FG~~~~~~L~~~a~G 192 (538)
-|..++|||++++..|-..+|-.++-+ +..-+ ..|.+. .|+..++.+.....+
T Consensus 73 ~L~~v~GIGpk~A~~iL~~f~~~~l~~aI~~~d~~~L~~vpGIG~K~A~rI~~~lk~ 129 (191)
T 1ixr_A 73 LLLSVSGVGPKVALALLSALPPRLLARALLEGDARLLTSASGVGRRLAERIALELKG 129 (191)
T ss_dssp HHHSSSCCCHHHHHHHHHHSCHHHHHHHHHTTCHHHHTTSTTCCHHHHHHHHHHHTT
T ss_pred HHhcCCCcCHHHHHHHHHhCChHHHHHHHHhCCHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 456699999999998876677655543 34444 677777 678888887644443
No 53
>3ign_A Diguanylate cyclase; ggdef domain, A1U3W3_marav, NESG, MQR89A, structural genomics, PSI-2, protein structure initiative; HET: C2E; 1.83A {Marinobacter aquaeolei VT8}
Probab=40.33 E-value=60 Score=28.18 Aligned_cols=63 Identities=21% Similarity=0.085 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHhcCC---CeEeeCccEEEEEcCccchhcCCCHHHHHHHHHHHHHH--------HhCCceEEEecC
Q 009298 40 TYYSDLTRKVFCKYDP---NFMAASLDEAYLDITEVCRERGISGIEIAEELRTSVYE--------EAGLTCSAGVAP 105 (538)
Q Consensus 40 ~~~s~~l~~il~~~sp---~Ve~~SiDEafLDlT~~~~l~g~~~~~la~~IR~~I~~--------~~Glt~S~GIA~ 105 (538)
..+...+.+.+....+ .+-.++-||..+=+.+.... ....++++|++.+.. ...+++|+||+.
T Consensus 63 d~~L~~ia~~L~~~~~~~~~~~R~~~d~F~ill~~~~~~---~~~~~~~~i~~~~~~~~~~~~~~~~~~~~siGi~~ 136 (177)
T 3ign_A 63 DEVIRHTADVTRNNIRQSDSAGRYGGEEFGIILPETDAE---SARVICERIREAIEKSTVSTSAGDIQYTVSMGIAQ 136 (177)
T ss_dssp HHHHHHHHHHHHTTSCTTSEEEECSSSEEEEEEETCCHH---HHHHHHHHHHHHHHTCCEECSSCEECCCEEEEEEE
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEecCCeEEEEeCCCCHH---HHHHHHHHHHHHHHhcCcccCCCceeEEEEEEEEe
Confidence 3456677777776643 46677888876555433211 467888999998854 135789999984
No 54
>1u9l_A Transcription elongation protein NUSA; escherichia coli NUSA, phage lambda protein N, regulation of RNA binding, transcription antitermination, X-RAY crystallography; 1.90A {Escherichia coli} SCOP: a.60.4.2 PDB: 1wcl_A
Probab=40.11 E-value=31 Score=26.79 Aligned_cols=45 Identities=18% Similarity=0.154 Sum_probs=34.7
Q ss_pred cCCCHHHHHHHHhhcCCCchHHHHhch-HHHHHH--cChhHHHHHHHhc
Q 009298 145 GGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAV--FSHSTADFFLSVG 190 (538)
Q Consensus 145 ~GIG~kt~~kL~~~lGI~TlgDL~~lp-~~L~kr--FG~~~~~~L~~~a 190 (538)
.||+...+++|.. -|++|+.+++..| ..|... |+...++.|...+
T Consensus 12 lgI~e~~a~~L~~-~Gf~tve~vA~~~~~eL~~I~G~dE~~a~~l~~~A 59 (70)
T 1u9l_A 12 LDIDEDFATVLVE-EGFSTLEELAYVPMKELLEIEGLDEPTVEALRERA 59 (70)
T ss_dssp HTCCHHHHHHHHH-TTCCCHHHHHHSCHHHHTTSTTCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHH-cCcCcHHHHHcCCHHHHhhccCCCHHHHHHHHHHH
Confidence 4999999999997 8999999999988 666654 4555555554443
No 55
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=38.71 E-value=6.5 Score=39.76 Aligned_cols=42 Identities=24% Similarity=0.295 Sum_probs=0.0
Q ss_pred CC-Cccccc--CCCHHHHHHHHhhcCCCchHHHHhch-HHHHHHcCh
Q 009298 138 SL-PIRKIG--GIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSH 180 (538)
Q Consensus 138 ~l-Pl~~L~--GIG~kt~~kL~~~lGI~TlgDL~~lp-~~L~krFG~ 180 (538)
++ ||..|+ ||++.+.++|++ .|++|+.+++..+ ..|.+.-|.
T Consensus 23 ~~~~~~~l~~~g~~~~~~~~l~~-~g~~t~~~~~~~~~~~l~~~~~i 68 (343)
T 1v5w_A 23 LFQDIDLLQKHGINVADIKKLKS-VGICTIKGIQMTTRRALCNVKGL 68 (343)
T ss_dssp -----------------------------------------------
T ss_pred ccCcHHHHhhCCCCHHHHHHHHH-cCCCcHHHHHhCCHHHHHHhhCC
Confidence 44 899998 999999999997 8999999999886 667666553
No 56
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=37.05 E-value=17 Score=39.62 Aligned_cols=29 Identities=21% Similarity=0.304 Sum_probs=25.6
Q ss_pred cccccCCCHHHHHHHHhhcCCCchHHHHhc
Q 009298 141 IRKIGGIGKVTEHILRDVFGINTCEEMLQK 170 (538)
Q Consensus 141 l~~L~GIG~kt~~kL~~~lGI~TlgDL~~l 170 (538)
+..|||||++++.+|-. -|+.|+.||.+.
T Consensus 99 L~~v~GVGpk~A~~i~~-~G~~s~edL~~a 127 (578)
T 2w9m_A 99 LLGVRGLGPKKIRSLWL-AGIDSLERLREA 127 (578)
T ss_dssp HTTSTTCCHHHHHHHHH-TTCCSHHHHHHH
T ss_pred HhCCCCcCHHHHHHHHH-cCCCCHHHHHHH
Confidence 57889999999999987 599999999763
No 57
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=33.12 E-value=14 Score=21.13 Aligned_cols=12 Identities=42% Similarity=1.024 Sum_probs=9.7
Q ss_pred ccccccccCCCC
Q 009298 451 YKCSLCGTEMPP 462 (538)
Q Consensus 451 ~~~~~~~~~~~~ 462 (538)
|+|..||.....
T Consensus 2 ~~C~~C~k~f~~ 13 (27)
T 1znf_A 2 YKCGLCERSFVE 13 (27)
T ss_dssp CBCSSSCCBCSS
T ss_pred ccCCCCCCcCCC
Confidence 899999987653
No 58
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=38.21 E-value=9.7 Score=22.38 Aligned_cols=25 Identities=20% Similarity=0.501 Sum_probs=14.4
Q ss_pred CccccccccCCCCCcHhhhhccccchH
Q 009298 450 DYKCSLCGTEMPPSFIEERQEHSDFHL 476 (538)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (538)
-|+|..||....-. ..-..|...|.
T Consensus 2 ~~~C~~C~k~f~~~--~~l~~H~~~H~ 26 (29)
T 2lvt_A 2 PCQCVMCGKAFTQA--SSLIAHVRQHT 26 (29)
Confidence 48999999865322 22234544443
No 59
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=30.99 E-value=40 Score=37.47 Aligned_cols=53 Identities=13% Similarity=0.124 Sum_probs=39.5
Q ss_pred hhcCCCcccccCCCHHHHHHHHhhcCCCchHHHHhch-HHHHH--HcChhHHHHHH
Q 009298 135 FISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCA--VFSHSTADFFL 187 (538)
Q Consensus 135 fL~~lPl~~L~GIG~kt~~kL~~~lGI~TlgDL~~lp-~~L~k--rFG~~~~~~L~ 187 (538)
++..-..=+|+|+|+++.+.|-+..+|+++.||..+. ..|.. .||...++.|+
T Consensus 442 hf~sr~aldI~GLG~k~i~~L~~~g~I~~~aDL~~L~~~~L~~l~gfG~Ksa~nLl 497 (671)
T 2owo_A 442 HFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGLERMGPKSAQNVV 497 (671)
T ss_dssp HHHSTTTTCCTTCCHHHHHHHHHTTCCSSGGGGGTCCHHHHHTSTTCCHHHHHHHH
T ss_pred HHhhhhhcCCCCCCHHHHHHHHHcCCCCCHHHHHhhCHHHhhcccccchhHHHHHH
Confidence 3344567788999999999998745689999999886 45554 68877655543
No 60
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=30.83 E-value=38 Score=37.64 Aligned_cols=50 Identities=14% Similarity=0.101 Sum_probs=37.2
Q ss_pred cCCCcccccCCCHHHHHHHHhhcCCCchHHHHhch-HHHHH--HcChhHHHHH
Q 009298 137 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCA--VFSHSTADFF 186 (538)
Q Consensus 137 ~~lPl~~L~GIG~kt~~kL~~~lGI~TlgDL~~lp-~~L~k--rFG~~~~~~L 186 (538)
..-..=+|+|+|+++.++|-+..+|.++.||..+. ..|.. .||...++.|
T Consensus 439 ~sr~aldI~GLG~k~i~~L~~~g~I~~~~DL~~L~~e~L~~l~g~G~Ksa~nL 491 (667)
T 1dgs_A 439 ASRKAMDIEGLGEKLIERLLEKGLVRDVADLYHLRKEDLLGLERMGEKSAQNL 491 (667)
T ss_dssp HSTTSSCCTTCCHHHHHHHHHTTSCSSGGGGGGGCCHHHHTTSSCCSTTHHHH
T ss_pred hcccccCcCcCCHHHHHHHHHcCCCCCHHHHHhcCHHHHhcccccchhhHHHH
Confidence 34455688999999999998756789999999886 55554 5886554444
No 61
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=30.78 E-value=23 Score=38.48 Aligned_cols=30 Identities=23% Similarity=0.504 Sum_probs=24.4
Q ss_pred cccccCCCHHHHHHHHhhcCCCchHHHHhc
Q 009298 141 IRKIGGIGKVTEHILRDVFGINTCEEMLQK 170 (538)
Q Consensus 141 l~~L~GIG~kt~~kL~~~lGI~TlgDL~~l 170 (538)
+..+||||++++..+-..+|+.|+.||...
T Consensus 95 l~~v~GvGpk~A~~~~~~lg~~~~~~l~~a 124 (575)
T 3b0x_A 95 VMEVPGVGPKTARLLYEGLGIDSLEKLKAA 124 (575)
T ss_dssp HHTSTTTCHHHHHHHHHTSCCCSHHHHHHH
T ss_pred HhcCCCcCHHHHHHHHHhcCCCCHHHHHHH
Confidence 457899999999987544799999999653
No 62
>3hva_A Protein FIMX; ggdef diguanylate cyclase, biofilm, C-DI-GMP, transferase; 2.04A {Pseudomonas aeruginosa PAO1}
Probab=30.25 E-value=84 Score=27.14 Aligned_cols=61 Identities=13% Similarity=-0.066 Sum_probs=39.2
Q ss_pred HHHHHHHHHHhcC---CCeEeeCccEEEEEcCccchhcCCCHHHHHHHHHHHHHH--------HhCCceEEEecC
Q 009298 42 YSDLTRKVFCKYD---PNFMAASLDEAYLDITEVCRERGISGIEIAEELRTSVYE--------EAGLTCSAGVAP 105 (538)
Q Consensus 42 ~s~~l~~il~~~s---p~Ve~~SiDEafLDlT~~~~l~g~~~~~la~~IR~~I~~--------~~Glt~S~GIA~ 105 (538)
+...+.+.+..+. ..+-.++-||..+=+.+... . ....++++|+..+.+ ...+++|+||+.
T Consensus 70 ~L~~~a~~L~~~~~~~~~~~R~~~d~F~ill~~~~~--~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~siGi~~ 141 (177)
T 3hva_A 70 LLGQLAGLMREQFGEEADLARFGDSIFAALFKGKTP--E-QAQAALQRLLKKVENHLFELNGRSAQATLSIGVAG 141 (177)
T ss_dssp HHHHHHHHHHHHHGGGCEEEECSSSEEEEEEETCCH--H-HHHHHHHHHHHHHHTCCEEETTEEECCCEEEEEEE
T ss_pred HHHHHHHHHHHhCCCCceEEEecCCeEEEEeCCCCH--H-HHHHHHHHHHHHHHhCccccCCceeeEEEEEEEEE
Confidence 4455556665543 24667888887655543321 1 467788999999854 125899999984
No 63
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=29.55 E-value=26 Score=43.28 Aligned_cols=40 Identities=8% Similarity=0.086 Sum_probs=35.3
Q ss_pred CCcccccCCCHHHHHHHHhhcCCCchHHHHhch-HHHHHHcC
Q 009298 139 LPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFS 179 (538)
Q Consensus 139 lPl~~L~GIG~kt~~kL~~~lGI~TlgDL~~lp-~~L~krFG 179 (538)
.||..|||||+..+++|.. .||+|+.||+++. ..+.+.++
T Consensus 1557 ~~L~qip~i~~~~ar~l~~-~gi~t~~dl~~~~~~~~~~ll~ 1597 (1724)
T 4f92_B 1557 SYLKQLPHFTSEHIKRCTD-KGVESVFDIMEMEDEERNALLQ 1597 (1724)
T ss_dssp CGGGGSTTCCHHHHHHHHH-HTCCSHHHHHSSCHHHHTTSSC
T ss_pred cCEecCCCCCHHHHHHHHH-CCCCCHHHHHhCCHHHHHHHHC
Confidence 6899999999999999997 9999999999986 66666655
No 64
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=29.29 E-value=13 Score=21.55 Aligned_cols=12 Identities=42% Similarity=1.201 Sum_probs=9.7
Q ss_pred CccccccccCCC
Q 009298 450 DYKCSLCGTEMP 461 (538)
Q Consensus 450 ~~~~~~~~~~~~ 461 (538)
-|+|+.||....
T Consensus 3 ~~~C~~C~k~f~ 14 (28)
T 2kvf_A 3 PYSCSVCGKRFS 14 (28)
T ss_dssp SEECSSSCCEES
T ss_pred CccCCCCCcccC
Confidence 489999998654
No 65
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=29.00 E-value=28 Score=32.76 Aligned_cols=49 Identities=12% Similarity=0.182 Sum_probs=34.4
Q ss_pred CcccccCCCHHHHHHHHhhcCCCchHH-HHhch-HHHHHH--cChhHHHHHHH
Q 009298 140 PIRKIGGIGKVTEHILRDVFGINTCEE-MLQKG-SLLCAV--FSHSTADFFLS 188 (538)
Q Consensus 140 Pl~~L~GIG~kt~~kL~~~lGI~TlgD-L~~lp-~~L~kr--FG~~~~~~L~~ 188 (538)
-|..++|||++++..|-..+|..++-+ +.+-+ ..|.+. .|+..++.+..
T Consensus 74 ~L~~V~GIGpk~A~~iL~~f~~~~l~~aI~~~d~~~L~~vpGIG~K~A~rI~~ 126 (203)
T 1cuk_A 74 ELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKTAERLIV 126 (203)
T ss_dssp HHHHSSSCCHHHHHHHHHHSCHHHHHHHHHTTCHHHHHTSTTCCHHHHHHHHH
T ss_pred HHhcCCCcCHHHHHHHHhhCChHHHHHHHHhCCHHHHhhCCCCCHHHHHHHHH
Confidence 456799999999988876677655543 44444 677777 67777777643
No 66
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=28.86 E-value=13 Score=21.39 Aligned_cols=12 Identities=33% Similarity=0.839 Sum_probs=9.6
Q ss_pred CccccccccCCC
Q 009298 450 DYKCSLCGTEMP 461 (538)
Q Consensus 450 ~~~~~~~~~~~~ 461 (538)
-|+|..||....
T Consensus 3 ~~~C~~C~k~f~ 14 (27)
T 2kvh_A 3 PFSCSLCPQRSR 14 (27)
T ss_dssp CEECSSSSCEES
T ss_pred CccCCCcChhhC
Confidence 489999998654
No 67
>3j21_V 50S ribosomal protein L24E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=28.73 E-value=19 Score=27.85 Aligned_cols=14 Identities=36% Similarity=0.767 Sum_probs=12.6
Q ss_pred CccccccccCCCCC
Q 009298 450 DYKCSLCGTEMPPS 463 (538)
Q Consensus 450 ~~~~~~~~~~~~~~ 463 (538)
-.+|+-||.+++|+
T Consensus 4 ~~~C~Fcg~~IyPG 17 (66)
T 3j21_V 4 WNVCSYCGKPFEPG 17 (66)
T ss_dssp CCBCTTTCSBCCTT
T ss_pred eeEecCcCCcccCC
Confidence 36899999999998
No 68
>3arc_U Photosystem II 12 kDa extrinsic protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_U* 2axt_U* 3bz2_U* 3kzi_U* 3prq_U* 3prr_U* 3a0b_U* 3a0h_U*
Probab=28.62 E-value=26 Score=29.10 Aligned_cols=30 Identities=10% Similarity=0.164 Sum_probs=24.3
Q ss_pred cccccCCCHHHHHHHHhhcC-CCchHHHHhch
Q 009298 141 IRKIGGIGKVTEHILRDVFG-INTCEEMLQKG 171 (538)
Q Consensus 141 l~~L~GIG~kt~~kL~~~lG-I~TlgDL~~lp 171 (538)
|..|||||+++++++-. .| ..++.||.+.+
T Consensus 28 L~~lpGIG~~~A~~IV~-~GpF~s~edL~~V~ 58 (97)
T 3arc_U 28 FIQYRGLYPTLAKLIVK-NAPYESVEDVLNIP 58 (97)
T ss_dssp GGGSTTCTTHHHHHHHH-HCCCSSGGGGGGCT
T ss_pred HhHCCCCCHHHHHHHHH-cCCCCCHHHHHhcc
Confidence 67789999999998876 55 78888987664
No 69
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=28.37 E-value=10 Score=31.85 Aligned_cols=22 Identities=32% Similarity=0.591 Sum_probs=16.7
Q ss_pred CccccccccCCCCCcHhhhhcc
Q 009298 450 DYKCSLCGTEMPPSFIEERQEH 471 (538)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~ 471 (538)
|-.|.+||-++.|.+..+..++
T Consensus 47 g~~CPvCgs~l~~~~~~~~i~~ 68 (112)
T 1l8d_A 47 KGKCPVCGRELTDEHREELLSK 68 (112)
T ss_dssp SEECTTTCCEECHHHHHHHHHH
T ss_pred CCCCCCCCCcCCHHHHHHHHHH
Confidence 6789999999998665554443
No 70
>1s5l_U Photosystem II 12 kDa extrinsic protein; photosynthesis, oxygen-evolving, tetra- manganese, membrane; HET: CL1 PHO HEM PL9 LMT BCR; 3.50A {Thermosynechococcus elongatus}
Probab=28.29 E-value=29 Score=30.55 Aligned_cols=30 Identities=10% Similarity=0.164 Sum_probs=25.3
Q ss_pred cccccCCCHHHHHHHHhhcC-CCchHHHHhch
Q 009298 141 IRKIGGIGKVTEHILRDVFG-INTCEEMLQKG 171 (538)
Q Consensus 141 l~~L~GIG~kt~~kL~~~lG-I~TlgDL~~lp 171 (538)
+..|||||++.++++-+ .| ..++.||.+.+
T Consensus 65 L~~LpGiGp~~A~~II~-~GpF~svedL~~V~ 95 (134)
T 1s5l_U 65 FIQYRGLYPTLAKLIVK-NAPYESVEDVLNIP 95 (134)
T ss_dssp GGGSTTCTHHHHHHHHH-TCCCSSGGGGGGCT
T ss_pred HHHCCCCCHHHHHHHHH-cCCCCCHHHHHhCC
Confidence 56789999999999886 65 78999998875
No 71
>2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain, helix turn helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.2.7
Probab=28.24 E-value=32 Score=28.07 Aligned_cols=31 Identities=13% Similarity=0.233 Sum_probs=21.1
Q ss_pred cccccCCCHHHHHHHHhhc----CCCchHHHHhch
Q 009298 141 IRKIGGIGKVTEHILRDVF----GINTCEEMLQKG 171 (538)
Q Consensus 141 l~~L~GIG~kt~~kL~~~l----GI~TlgDL~~lp 171 (538)
|..|+|||+++++++-+.. .+.++.||.+.+
T Consensus 42 L~~ipGIG~~~A~~Il~~r~~~g~f~s~edL~~v~ 76 (98)
T 2edu_A 42 LRSLQRIGPKKAQLIVGWRELHGPFSQVEDLERVE 76 (98)
T ss_dssp HHHSTTCCHHHHHHHHHHHHHHCCCSSGGGGGGST
T ss_pred HHHCCCCCHHHHHHHHHHHHhcCCcCCHHHHHhCC
Confidence 5677899998888776533 255677765554
No 72
>3hvw_A Diguanylate-cyclase (DGC); alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.70A {Pseudomonas aeruginosa}
Probab=27.02 E-value=61 Score=28.43 Aligned_cols=61 Identities=13% Similarity=0.006 Sum_probs=40.2
Q ss_pred HHHHHHHHHHhcCC--CeEeeCccEEEEEcCccchhcCCCHHHHHHHHHHHHHH-------HhCCceEEEecC
Q 009298 42 YSDLTRKVFCKYDP--NFMAASLDEAYLDITEVCRERGISGIEIAEELRTSVYE-------EAGLTCSAGVAP 105 (538)
Q Consensus 42 ~s~~l~~il~~~sp--~Ve~~SiDEafLDlT~~~~l~g~~~~~la~~IR~~I~~-------~~Glt~S~GIA~ 105 (538)
+...+.+.+....+ .+-.++-||..+=+.+... . ....++++|++.+.+ ...+++|+||+.
T Consensus 56 ~L~~ia~~L~~~~~~~~v~R~~~deF~ill~~~~~--~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~siGi~~ 125 (176)
T 3hvw_A 56 LMLEARDRIRAELPDFTLYKISPTRFGLLLPRQQQ--E-ETESVCLRLLRAFESPVVCRGIPIKANVGLGVLP 125 (176)
T ss_dssp HHHHHHHHHHHHCTTSCEEEEETTEEEEEEEGGGG--G-GHHHHHHHHHHHTTSCEEETTEEECCCCEEEEEE
T ss_pred HHHHHHHHHHHHCCCCeEEEecCCEEEEEeCCCCH--H-HHHHHHHHHHHHHhCCcccCCEEEEEEEEEEEEe
Confidence 45566666665543 4566788887665554321 1 578899999988843 236889999984
No 73
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=26.76 E-value=18 Score=20.90 Aligned_cols=12 Identities=17% Similarity=0.819 Sum_probs=9.6
Q ss_pred CccccccccCCC
Q 009298 450 DYKCSLCGTEMP 461 (538)
Q Consensus 450 ~~~~~~~~~~~~ 461 (538)
-|+|..||....
T Consensus 2 ~~~C~~C~~~f~ 13 (29)
T 1ard_A 2 SFVCEVCTRAFA 13 (29)
T ss_dssp CCBCTTTCCBCS
T ss_pred CeECCCCCcccC
Confidence 489999998654
No 74
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=26.29 E-value=18 Score=26.88 Aligned_cols=10 Identities=60% Similarity=1.524 Sum_probs=5.5
Q ss_pred cCcccccccc
Q 009298 449 DDYKCSLCGT 458 (538)
Q Consensus 449 ~~~~~~~~~~ 458 (538)
+|++|..||.
T Consensus 35 ~dw~CP~Cg~ 44 (54)
T 4rxn_A 35 DDWVCPLCGV 44 (54)
T ss_dssp TTCBCTTTCC
T ss_pred CCCcCcCCCC
Confidence 4455666654
No 75
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=32.06 E-value=14 Score=21.05 Aligned_cols=12 Identities=33% Similarity=0.924 Sum_probs=9.4
Q ss_pred CccccccccCCC
Q 009298 450 DYKCSLCGTEMP 461 (538)
Q Consensus 450 ~~~~~~~~~~~~ 461 (538)
-|+|..||....
T Consensus 2 p~~C~~C~k~f~ 13 (26)
T 2lvu_A 2 PYVCERCGKRFV 13 (26)
Confidence 389999997654
No 76
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=25.90 E-value=21 Score=20.59 Aligned_cols=13 Identities=23% Similarity=0.720 Sum_probs=10.3
Q ss_pred CccccccccCCCC
Q 009298 450 DYKCSLCGTEMPP 462 (538)
Q Consensus 450 ~~~~~~~~~~~~~ 462 (538)
-|+|..||.....
T Consensus 2 ~~~C~~C~k~f~~ 14 (30)
T 1klr_A 2 TYQCQYCEFRSAD 14 (30)
T ss_dssp CCCCSSSSCCCSC
T ss_pred CccCCCCCCccCC
Confidence 4899999987654
No 77
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=25.74 E-value=15 Score=21.31 Aligned_cols=12 Identities=42% Similarity=1.184 Sum_probs=9.4
Q ss_pred CccccccccCCC
Q 009298 450 DYKCSLCGTEMP 461 (538)
Q Consensus 450 ~~~~~~~~~~~~ 461 (538)
-|+|..||....
T Consensus 3 ~~~C~~C~k~f~ 14 (27)
T 2kvg_A 3 PYRCPLCRAGCP 14 (27)
T ss_dssp TEEETTTTEEES
T ss_pred CcCCCCCCcccC
Confidence 489999998654
No 78
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=25.69 E-value=22 Score=20.74 Aligned_cols=12 Identities=33% Similarity=1.010 Sum_probs=9.7
Q ss_pred CccccccccCCC
Q 009298 450 DYKCSLCGTEMP 461 (538)
Q Consensus 450 ~~~~~~~~~~~~ 461 (538)
-|+|..||....
T Consensus 2 ~~~C~~C~k~f~ 13 (30)
T 1paa_A 2 AYACGLCNRAFT 13 (30)
T ss_dssp CSBCTTTCCBCS
T ss_pred CcCCcccCcccC
Confidence 489999998754
No 79
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=25.64 E-value=63 Score=32.96 Aligned_cols=53 Identities=17% Similarity=0.368 Sum_probs=35.2
Q ss_pred cccccCCCHHHHHHHHhhc--C-CCchHHHHh--ch---HHHHHHc--ChhHHHHHHHhccCCCC
Q 009298 141 IRKIGGIGKVTEHILRDVF--G-INTCEEMLQ--KG---SLLCAVF--SHSTADFFLSVGLGLGS 195 (538)
Q Consensus 141 l~~L~GIG~kt~~kL~~~l--G-I~TlgDL~~--lp---~~L~krF--G~~~~~~L~~~a~Gid~ 195 (538)
+..|||||+++++++.+.+ | +..+.+|.+ .| ..|.+.+ |+.++..||+. |+..
T Consensus 63 l~~lpGIG~~~A~kI~E~l~tG~~~~le~L~~d~~~~~l~~l~~I~GvG~kta~~l~~~--Gi~t 125 (360)
T 2ihm_A 63 LHGLPYFGEHSTRVIQELLEHGTCEEVKQVRCSERYQTMKLFTQVFGVGVKTANRWYQE--GLRT 125 (360)
T ss_dssp GTTCTTCCHHHHHHHHHHHHHSCCHHHHHHHHSHHHHHHHHHHTSTTCCHHHHHHHHHT--TCCS
T ss_pred HhcCCCCCHHHHHHHHHHHHcCChHHHHHHhcccchHHHHHHhCCCCCCHHHHHHHHHc--CCCC
Confidence 7899999999999988621 3 455566653 23 2445555 46677878764 7654
No 80
>2qt7_A Receptor-type tyrosine-protein phosphatase-like N; IA-2, ICA-512, protein-tyrosine phosphatase, transmembrane protein, diabetes, autoimmunity; 1.30A {Homo sapiens} PDB: 3n01_A 3np5_A 3ng8_A 3n4w_A
Probab=25.46 E-value=1.9e+02 Score=23.63 Aligned_cols=65 Identities=12% Similarity=0.189 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHhcCCCeEeeCcc--EEEEEcCccchhcCCCHHHHHH---HHHHHHHHHhCCce-EEEecCC
Q 009298 40 TYYSDLTRKVFCKYDPNFMAASLD--EAYLDITEVCRERGISGIEIAE---ELRTSVYEEAGLTC-SAGVAPN 106 (538)
Q Consensus 40 ~~~s~~l~~il~~~sp~Ve~~SiD--EafLDlT~~~~l~g~~~~~la~---~IR~~I~~~~Glt~-S~GIA~n 106 (538)
.+..+.+++++.--+..+.-.+++ ++-.-|.... .+..+.++|+ .++..|..++|+.+ +.|||..
T Consensus 20 ~~l~~~la~ll~l~~~~Ft~i~V~g~aVTFrV~~N~--~n~taadVa~~a~~~k~~Le~~~G~~Iv~aGVG~r 90 (91)
T 2qt7_A 20 VKLLEILAEHVHMSSGSFINISVVGPALTFRIRHNE--QNLSLADVTQQAGLVKSELEAQTGLQILQTGVGQR 90 (91)
T ss_dssp HHHHHHHHHHHTSCGGGEEEEEEETTEEEEEECCCT--TCCCHHHHHHHHHHTHHHHHHHHTSCEEEEEEECC
T ss_pred HHHHHHHHHHhcCCccceeeeEeecceEEEEeccCc--ccCCHHHHHHHHHHhHHHHHHhhCeEEEecccCCC
Confidence 344455555554333333323332 2333333222 2335555544 45899999999998 9999863
No 81
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=25.37 E-value=17 Score=20.96 Aligned_cols=12 Identities=33% Similarity=0.905 Sum_probs=9.4
Q ss_pred CccccccccCCC
Q 009298 450 DYKCSLCGTEMP 461 (538)
Q Consensus 450 ~~~~~~~~~~~~ 461 (538)
.|+|..||....
T Consensus 2 ~~~C~~C~k~f~ 13 (29)
T 2m0f_A 2 PLKCRECGKQFT 13 (29)
T ss_dssp CEECTTTSCEES
T ss_pred CccCCCCCCccC
Confidence 489999998654
No 82
>3vdp_A Recombination protein RECR; zinc finger, DNA repair, DNA binding; 2.45A {Thermoanaerobacter tengcongensis} PDB: 3vdu_A 3ve5_D
Probab=25.34 E-value=22 Score=33.71 Aligned_cols=16 Identities=38% Similarity=0.555 Sum_probs=14.5
Q ss_pred cccccCCCHHHHHHHH
Q 009298 141 IRKIGGIGKVTEHILR 156 (538)
Q Consensus 141 l~~L~GIG~kt~~kL~ 156 (538)
+.+|||||+|++++|.
T Consensus 28 l~~LPGIG~KsA~RlA 43 (212)
T 3vdp_A 28 LSKLPGIGPKTAQRLA 43 (212)
T ss_dssp HHTSTTCCHHHHHHHH
T ss_pred HHHCCCCCHHHHHHHH
Confidence 6788999999999996
No 83
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=31.20 E-value=15 Score=21.47 Aligned_cols=12 Identities=25% Similarity=0.753 Sum_probs=9.8
Q ss_pred CccccccccCCC
Q 009298 450 DYKCSLCGTEMP 461 (538)
Q Consensus 450 ~~~~~~~~~~~~ 461 (538)
-|+|..||....
T Consensus 3 ~~~C~~C~k~f~ 14 (30)
T 2lvr_A 3 PYVCIHCQRQFA 14 (30)
Confidence 489999998654
No 84
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=25.04 E-value=26 Score=19.97 Aligned_cols=13 Identities=23% Similarity=0.695 Sum_probs=10.2
Q ss_pred CccccccccCCCC
Q 009298 450 DYKCSLCGTEMPP 462 (538)
Q Consensus 450 ~~~~~~~~~~~~~ 462 (538)
-|+|..||.....
T Consensus 2 ~~~C~~C~~~f~~ 14 (29)
T 2m0e_A 2 EHKCPHCDKKFNQ 14 (29)
T ss_dssp CCCCSSCCCCCCT
T ss_pred CCcCCCCCcccCC
Confidence 3899999987654
No 85
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.73 E-value=23 Score=21.85 Aligned_cols=12 Identities=25% Similarity=0.858 Sum_probs=9.9
Q ss_pred CccccccccCCC
Q 009298 450 DYKCSLCGTEMP 461 (538)
Q Consensus 450 ~~~~~~~~~~~~ 461 (538)
-|+|..||....
T Consensus 9 ~~~C~~C~k~f~ 20 (36)
T 2elr_A 9 THLCDMCGKKFK 20 (36)
T ss_dssp SCBCTTTCCBCS
T ss_pred CeecCcCCCCcC
Confidence 599999998654
No 86
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=24.70 E-value=45 Score=33.69 Aligned_cols=52 Identities=21% Similarity=0.401 Sum_probs=32.7
Q ss_pred cccccCCCHHHHHHHHhhc---C-CCchHHHHh-ch--HHHHHHc--ChhHHHHHHHhccCCCC
Q 009298 141 IRKIGGIGKVTEHILRDVF---G-INTCEEMLQ-KG--SLLCAVF--SHSTADFFLSVGLGLGS 195 (538)
Q Consensus 141 l~~L~GIG~kt~~kL~~~l---G-I~TlgDL~~-lp--~~L~krF--G~~~~~~L~~~a~Gid~ 195 (538)
+..|||||+++++++.+ + | +..+.+|.. .| ..|.+.. |+.++..||+. |+..
T Consensus 59 l~~lpGIG~~~A~kI~E-~l~tG~~~~le~l~~~~p~l~ll~~v~GiG~k~a~~l~~~--Gi~t 119 (335)
T 2bcq_A 59 ACSIPGIGKRMAEKIIE-ILESGHLRKLDHISESVPVLELFSNIWGAGTKTAQMWYQQ--GFRS 119 (335)
T ss_dssp HHTSTTCCHHHHHHHHH-HHHSSSCGGGGGCCTTHHHHHHHHTSTTCCHHHHHHHHHT--TCCS
T ss_pred HhcCCCccHHHHHHHHH-HHHcCCchHHHHHhhhhHHHHHHhcCCCcCHHHHHHHHHc--CCCC
Confidence 67899999999999886 4 3 444445422 23 2222333 56778878764 7654
No 87
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=23.83 E-value=55 Score=35.79 Aligned_cols=46 Identities=13% Similarity=0.170 Sum_probs=35.7
Q ss_pred CcccccCCCHHHHHHHHhhcC-CCchHHHHhch-HHHHH--HcChhHHHHH
Q 009298 140 PIRKIGGIGKVTEHILRDVFG-INTCEEMLQKG-SLLCA--VFSHSTADFF 186 (538)
Q Consensus 140 Pl~~L~GIG~kt~~kL~~~lG-I~TlgDL~~lp-~~L~k--rFG~~~~~~L 186 (538)
.-=+|.|+|.++.++|-+ .| |+++.||..+. ..|.. +||...+..|
T Consensus 447 ~amdI~GlG~~~i~~L~~-~g~i~~~~Dly~L~~~~L~~l~g~geKsa~nL 496 (586)
T 4glx_A 447 RAMDVDGMGDKIIDQLVE-KEYVHTPADLFKLTAGKLTGLERMGPKSAQNV 496 (586)
T ss_dssp TTTCCTTCCHHHHHHHHH-TTCCSSGGGGGTCCHHHHHTSTTCCHHHHHHH
T ss_pred ccccCCCcCHHHHHHHHh-cCCCCCHHHHhCCCHHHHhcccCccHHHHHHH
Confidence 344678999999999997 88 59999999987 55654 6887655544
No 88
>1vq8_U 50S ribosomal protein L24E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.39.1.6 PDB: 1giy_R 1jj2_T 1k73_V* 1k8a_V* 1k9m_V* 1kc8_V* 1kd1_V* 1kqs_T* 1m1k_V* 1m90_V* 1ml5_r* 1n8r_V* 1nji_V* 1q7y_V* 1q81_V* 1q82_V* 1q86_V* 1qvf_T 1qvg_T 1s72_U* ...
Probab=23.69 E-value=27 Score=27.02 Aligned_cols=13 Identities=38% Similarity=1.145 Sum_probs=12.2
Q ss_pred ccccccccCCCCC
Q 009298 451 YKCSLCGTEMPPS 463 (538)
Q Consensus 451 ~~~~~~~~~~~~~ 463 (538)
.+|+-||.+++|+
T Consensus 4 ~~C~Fcg~~IyPG 16 (66)
T 1vq8_U 4 RECDYCGTDIEPG 16 (66)
T ss_dssp CBCTTTCCBCCSS
T ss_pred eEecCcCCcccCC
Confidence 6899999999998
No 89
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=23.14 E-value=20 Score=21.96 Aligned_cols=12 Identities=33% Similarity=0.861 Sum_probs=9.7
Q ss_pred CccccccccCCC
Q 009298 450 DYKCSLCGTEMP 461 (538)
Q Consensus 450 ~~~~~~~~~~~~ 461 (538)
.|+|..||....
T Consensus 7 ~~~C~~C~k~f~ 18 (35)
T 2elx_A 7 GYVCALCLKKFV 18 (35)
T ss_dssp SEECSSSCCEES
T ss_pred CeECCCCcchhC
Confidence 499999998654
No 90
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=22.24 E-value=21 Score=20.63 Aligned_cols=12 Identities=33% Similarity=1.129 Sum_probs=9.6
Q ss_pred CccccccccCCC
Q 009298 450 DYKCSLCGTEMP 461 (538)
Q Consensus 450 ~~~~~~~~~~~~ 461 (538)
-|+|..||...+
T Consensus 3 ~~~C~~C~~~f~ 14 (30)
T 2m0d_A 3 PYQCDYCGRSFS 14 (30)
T ss_dssp CEECTTTCCEES
T ss_pred CccCCCCCcccC
Confidence 489999998654
No 91
>3idw_A Actin cytoskeleton-regulatory complex protein SLA; clathrin adaptor, endocytosis, SAM domain, yeast, actin-BIND membrane, endosome; 1.85A {Saccharomyces cerevisiae}
Probab=22.14 E-value=93 Score=24.39 Aligned_cols=38 Identities=18% Similarity=0.286 Sum_probs=28.2
Q ss_pred CCcccccCCCHHHHHHHHhhcCCCchHHHHhchHHHHHHcChh
Q 009298 139 LPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHS 181 (538)
Q Consensus 139 lPl~~L~GIG~kt~~kL~~~lGI~TlgDL~~lp~~L~krFG~~ 181 (538)
+.-+-||.|.+. .|+. |||+ .||+.+.-..|.+.||..
T Consensus 31 i~e~mL~Dl~~~---~Lr~-LGi~-eGDIIrVmk~l~~k~~r~ 68 (72)
T 3idw_A 31 LTEDMMPDINNS---MLRT-LGLR-EGDIVRVMKHLDKKFGRE 68 (72)
T ss_dssp CCGGGGGGCCHH---HHHH-TTCC-HHHHHHHHHHHHHHTTC-
T ss_pred CCHHHHhhCCHH---HHHH-cCCc-hhhHHHHHHHHHHHhCcC
Confidence 455666777665 4887 9996 899998777778888854
No 92
>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.11 E-value=21 Score=22.57 Aligned_cols=11 Identities=36% Similarity=0.631 Sum_probs=9.1
Q ss_pred CccccccccCC
Q 009298 450 DYKCSLCGTEM 460 (538)
Q Consensus 450 ~~~~~~~~~~~ 460 (538)
-|+|+.||...
T Consensus 9 ~~~C~~C~k~f 19 (37)
T 2elm_A 9 LYYCSQCHYSS 19 (37)
T ss_dssp EEECSSSSCEE
T ss_pred CeECCCCCccc
Confidence 49999999864
No 93
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=21.98 E-value=21 Score=21.91 Aligned_cols=12 Identities=17% Similarity=0.753 Sum_probs=9.6
Q ss_pred CccccccccCCC
Q 009298 450 DYKCSLCGTEMP 461 (538)
Q Consensus 450 ~~~~~~~~~~~~ 461 (538)
-|+|..||....
T Consensus 7 ~~~C~~C~k~f~ 18 (35)
T 1srk_A 7 PFVCRICLSAFT 18 (35)
T ss_dssp CEECSSSCCEES
T ss_pred CeeCCCCCcccC
Confidence 489999998653
No 94
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Probab=21.93 E-value=24 Score=21.52 Aligned_cols=10 Identities=20% Similarity=0.850 Sum_probs=8.2
Q ss_pred CccccccccC
Q 009298 450 DYKCSLCGTE 459 (538)
Q Consensus 450 ~~~~~~~~~~ 459 (538)
-|+|..||..
T Consensus 2 p~~C~~C~k~ 11 (32)
T 2kfq_A 2 AFACPACPKR 11 (32)
T ss_dssp CSSSSSSCTT
T ss_pred CCCCCCCCcc
Confidence 3899999974
No 95
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=21.51 E-value=22 Score=20.50 Aligned_cols=12 Identities=17% Similarity=0.664 Sum_probs=9.4
Q ss_pred CccccccccCCC
Q 009298 450 DYKCSLCGTEMP 461 (538)
Q Consensus 450 ~~~~~~~~~~~~ 461 (538)
-|+|..||....
T Consensus 2 ~~~C~~C~k~f~ 13 (29)
T 1rik_A 2 KFACPECPKRFM 13 (29)
T ss_dssp CEECSSSSCEES
T ss_pred CccCCCCCchhC
Confidence 389999998654
No 96
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.46 E-value=22 Score=22.05 Aligned_cols=12 Identities=25% Similarity=0.863 Sum_probs=9.5
Q ss_pred CccccccccCCC
Q 009298 450 DYKCSLCGTEMP 461 (538)
Q Consensus 450 ~~~~~~~~~~~~ 461 (538)
-|+|..||....
T Consensus 9 ~~~C~~C~k~f~ 20 (36)
T 2elv_A 9 LYDCHICERKFK 20 (36)
T ss_dssp CEECSSSCCEES
T ss_pred CeECCCCCCccC
Confidence 489999997543
No 97
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.38 E-value=22 Score=22.03 Aligned_cols=13 Identities=38% Similarity=0.846 Sum_probs=10.2
Q ss_pred CccccccccCCCC
Q 009298 450 DYKCSLCGTEMPP 462 (538)
Q Consensus 450 ~~~~~~~~~~~~~ 462 (538)
-|+|..||.....
T Consensus 9 ~~~C~~C~k~f~~ 21 (36)
T 2elq_A 9 PFKCSLCEYATRS 21 (36)
T ss_dssp SEECSSSSCEESC
T ss_pred CccCCCCCchhCC
Confidence 4899999987543
No 98
>2od8_B DNA ligase I, mitochondrial precursor; homotrimer, PCNA-peptide complex, PCNA, protein binding; HET: DNA; 2.80A {Saccharomyces cerevisiae}
Probab=21.37 E-value=28 Score=21.14 Aligned_cols=17 Identities=41% Similarity=0.552 Sum_probs=13.9
Q ss_pred CcccccHHHHhccCccc
Q 009298 311 DPTQKTLTNFMTSGHAS 327 (538)
Q Consensus 311 ~~~Q~tI~~ff~~~~~~ 327 (538)
.+.|.+|.+||++..+.
T Consensus 4 kpkqatlarfftsmknk 20 (26)
T 2od8_B 4 KPKQATLARFFTSMKNK 20 (26)
T ss_pred ChhHhHHHHHHHHhccC
Confidence 46799999999987743
No 99
>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger, toprim, walker B ATP binding motif; 2.50A {Deinococcus radiodurans} SCOP: e.49.1.1 PDB: 2v1c_A
Probab=21.36 E-value=30 Score=33.20 Aligned_cols=16 Identities=25% Similarity=0.524 Sum_probs=14.3
Q ss_pred cccccCCCHHHHHHHH
Q 009298 141 IRKIGGIGKVTEHILR 156 (538)
Q Consensus 141 l~~L~GIG~kt~~kL~ 156 (538)
+.+|||||+|++++|.
T Consensus 14 l~~LPGIG~KSA~RlA 29 (228)
T 1vdd_A 14 LSRLPGIGPKSAQRLA 29 (228)
T ss_dssp HHTSTTCCHHHHHHHH
T ss_pred HhHCCCCCHHHHHHHH
Confidence 5788999999999996
No 100
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=21.29 E-value=1.3e+02 Score=30.56 Aligned_cols=62 Identities=16% Similarity=0.039 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHhcC---CCeEeeCccEEEEEcCccchhcCCCHHHHHHHHHHHHHH----------HhCCceEEEecC
Q 009298 41 YYSDLTRKVFCKYD---PNFMAASLDEAYLDITEVCRERGISGIEIAEELRTSVYE----------EAGLTCSAGVAP 105 (538)
Q Consensus 41 ~~s~~l~~il~~~s---p~Ve~~SiDEafLDlT~~~~l~g~~~~~la~~IR~~I~~----------~~Glt~S~GIA~ 105 (538)
.+...+++.+.... ..+-.++-||..+=+.+.... ....++++|+..+.. ...+++|+||+.
T Consensus 344 ~~L~~~a~~l~~~~~~~d~~~R~ggdeF~il~~~~~~~---~~~~~~~~i~~~~~~~~~~~~~~~~~~~~t~siG~~~ 418 (459)
T 1w25_A 344 EVLREFALRLASNVRAIDLPCRYGGEEFVVIMPDTALA---DALRIAERIRMHVSGSPFTVAHGREMLNVTISIGVSA 418 (459)
T ss_dssp HHHHHHHHHHHHTSCTTSEEEECSSSEEEEEETTCCHH---HHHHHHHHHHHHHHTSCEECGGGSCEECCCEEEEEEE
T ss_pred HHHHHHHHHHHHhCCCcCEEEEEcCceEEEEeCCCCHH---HHHHHHHHHHHHHHhCCccccCCCceeEEEEEEEEEe
Confidence 45666777777654 346778889977666543221 367889999998852 135899999974
No 101
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.07 E-value=23 Score=21.85 Aligned_cols=12 Identities=33% Similarity=0.819 Sum_probs=9.7
Q ss_pred CccccccccCCC
Q 009298 450 DYKCSLCGTEMP 461 (538)
Q Consensus 450 ~~~~~~~~~~~~ 461 (538)
-|+|..||....
T Consensus 9 ~~~C~~C~k~f~ 20 (36)
T 2elt_A 9 PYKCPQCSYASA 20 (36)
T ss_dssp SEECSSSSCEES
T ss_pred CCCCCCCCcccC
Confidence 599999998654
No 102
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=21.05 E-value=93 Score=31.35 Aligned_cols=53 Identities=25% Similarity=0.432 Sum_probs=33.8
Q ss_pred cccccCCCHHHHHHHHhhc--C-CCchHHHHhch--H---HHHHHc--ChhHHHHHHHhccCCCC
Q 009298 141 IRKIGGIGKVTEHILRDVF--G-INTCEEMLQKG--S---LLCAVF--SHSTADFFLSVGLGLGS 195 (538)
Q Consensus 141 l~~L~GIG~kt~~kL~~~l--G-I~TlgDL~~lp--~---~L~krF--G~~~~~~L~~~a~Gid~ 195 (538)
+..|||||+++++++.+.+ | +..+.+|.+-+ . .|.+.+ |+.++..||+. |+..
T Consensus 59 l~~LpGIG~~~A~kI~E~l~tG~~~~le~l~~~~~~~~l~~l~~V~GiGpk~a~~l~~~--Gi~t 121 (335)
T 2fmp_A 59 AKKLPGVGTKIAEKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDE--GIKT 121 (335)
T ss_dssp HHTSTTCCHHHHHHHHHHHHHSSCHHHHHHHHCHHHHHHHHHTTSTTCCHHHHHHHHHT--TCCS
T ss_pred HhcCCCCcHHHHHHHHHHHHhCCcHHHHHHHcccchhHHHHHhCCCCCCHHHHHHHHHc--CCCC
Confidence 6889999999999988722 3 34445554432 2 344444 46677778764 7654
No 103
>3icl_A EAL/ggdef domain protein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics, consortium, NESG; HET: MSE; 2.00A {Methylococcus capsulatus}
Probab=20.62 E-value=2e+02 Score=24.35 Aligned_cols=65 Identities=11% Similarity=0.042 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHhcCC---CeEeeCccEEEEEcCccchhcCCCHHHHHHHHHHHHHHH-------hCCceEEEecCC
Q 009298 40 TYYSDLTRKVFCKYDP---NFMAASLDEAYLDITEVCRERGISGIEIAEELRTSVYEE-------AGLTCSAGVAPN 106 (538)
Q Consensus 40 ~~~s~~l~~il~~~sp---~Ve~~SiDEafLDlT~~~~l~g~~~~~la~~IR~~I~~~-------~Glt~S~GIA~n 106 (538)
..+...+.+.+....+ .+-.++-||..+=+.+..... ....++++|+..+... ..+++|+||+..
T Consensus 54 d~~L~~~a~~L~~~~~~~~~~~R~~~d~F~ill~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~siGia~~ 128 (171)
T 3icl_A 54 DRLLRATAERIRTAVRDGDTVARIGGDKFTILLNGAKDTL--NGALVAQKILDGLAQPFVFGAQQIVISVSIGIAVS 128 (171)
T ss_dssp HHHHHHHHHHHHHHSCTTCEEEEETTTEEEEEESSCTTST--TTHHHHHHHHHHHTSCEEETTEEECCCEEEEEEET
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEecCCEEEEEecCCCChH--HHHHHHHHHHHHhhCCEEECCEEEEEEEEEEEEEc
Confidence 3455666777776543 466788899766555432211 3577888888887432 258899999843
No 104
>3ung_C CMR2DHD; ferredoxin fold, nucleotide-binding, polymerase, CMR complex function; HET: ADP; 2.31A {Pyrococcus furiosus} PDB: 3ur3_C 4doz_A
Probab=20.48 E-value=28 Score=38.64 Aligned_cols=12 Identities=33% Similarity=1.185 Sum_probs=0.0
Q ss_pred cCccccccccCC
Q 009298 449 DDYKCSLCGTEM 460 (538)
Q Consensus 449 ~~~~~~~~~~~~ 460 (538)
+||||+|||.-+
T Consensus 266 ~g~kc~lcGE~~ 277 (693)
T 3ung_C 266 KGWKCHVCGENL 277 (693)
T ss_dssp -CCBCSSSSSSB
T ss_pred CCceeeccCccc
No 105
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1
Probab=20.01 E-value=28 Score=21.41 Aligned_cols=12 Identities=17% Similarity=0.664 Sum_probs=9.6
Q ss_pred CccccccccCCC
Q 009298 450 DYKCSLCGTEMP 461 (538)
Q Consensus 450 ~~~~~~~~~~~~ 461 (538)
-|+|..||....
T Consensus 2 p~~C~~C~k~F~ 13 (33)
T 1rim_A 2 KFACPECPKRFM 13 (33)
T ss_dssp CCCCSSSCCCCS
T ss_pred cccCCCCCchhC
Confidence 389999998654
Done!