Query 009298
Match_columns 538
No_of_seqs 178 out of 1489
Neff 6.6
Searched_HMMs 13730
Date Mon Mar 25 23:20:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009298.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/009298hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1t94a2 e.8.1.7 (A:75-407) DNA 100.0 3.3E-47 2.4E-51 391.9 23.4 195 3-198 64-333 (333)
2 d1jx4a2 e.8.1.7 (A:1-240) DinB 100.0 8.4E-47 6.1E-51 372.5 18.7 195 2-200 44-239 (240)
3 d1zeta2 e.8.1.7 (A:27-299) DNA 100.0 1E-46 7.4E-51 378.7 19.5 199 3-204 39-273 (273)
4 d1im4a_ e.8.1.7 (A:) DinB homo 100.0 4.4E-43 3.2E-47 339.0 16.0 161 3-166 49-209 (209)
5 d1jiha2 e.8.1.7 (A:1-389) DNA 100.0 9.5E-41 6.9E-45 349.4 16.6 168 2-171 60-332 (389)
6 d1t94a1 d.240.1.1 (A:411-515) 99.6 4.2E-16 3.1E-20 132.4 5.0 98 203-300 2-105 (105)
7 d1jx4a1 d.240.1.1 (A:241-341) 99.5 6.5E-14 4.7E-18 118.4 12.5 96 204-302 2-101 (101)
8 d1unnc_ d.240.1.1 (C:) DNA pol 99.4 5.4E-13 3.9E-17 114.3 14.2 105 205-317 1-109 (111)
9 d1k1sa1 d.240.1.1 (A:240-344) 99.4 2.6E-13 1.9E-17 115.4 11.0 98 202-303 2-104 (105)
10 d1zeta1 d.240.1.1 (A:300-414) 99.3 1.6E-14 1.1E-18 125.1 -4.8 98 205-302 1-115 (115)
11 d1jiha1 d.240.1.1 (A:390-509) 99.3 1.6E-11 1.1E-15 106.7 11.6 100 203-302 2-118 (120)
12 d2i1qa1 a.60.4.1 (A:5-64) DNA 96.9 0.00043 3.1E-08 51.5 4.7 50 141-191 1-53 (60)
13 d1pzna1 a.60.4.1 (A:35-95) DNA 95.9 0.0057 4.1E-07 45.2 5.4 50 140-190 2-54 (61)
14 d1szpa1 a.60.4.1 (A:81-144) DN 95.7 0.0065 4.7E-07 45.5 5.2 52 139-191 1-57 (64)
15 d2fmpa2 a.60.12.1 (A:92-148) D 94.9 0.0072 5.2E-07 44.1 3.0 30 141-171 9-38 (57)
16 d2bcqa2 a.60.12.1 (A:329-385) 94.7 0.0077 5.6E-07 43.9 2.7 29 141-170 10-38 (57)
17 d1kfta_ a.60.2.3 (A:) Excinucl 94.4 0.013 9.2E-07 42.6 3.2 47 141-189 4-53 (56)
18 d2a1ja1 a.60.2.5 (A:837-898) D 94.1 0.03 2.2E-06 41.2 4.8 49 141-191 5-55 (62)
19 d1jmsa3 a.60.12.1 (A:243-302) 94.0 0.013 9.7E-07 43.1 2.7 29 141-170 10-38 (60)
20 d2p6ra2 a.289.1.2 (A:489-686) 91.6 0.06 4.4E-06 48.9 4.0 47 139-186 144-190 (198)
21 d1gm5a2 b.40.4.9 (A:106-285) R 91.3 0.033 2.4E-06 49.4 1.9 31 139-170 10-40 (180)
22 d1doqa_ a.60.3.1 (A:) C-termin 90.8 0.1 7.3E-06 39.3 3.9 48 138-187 7-57 (69)
23 d1b22a_ a.60.4.1 (A:) DNA repa 90.6 0.051 3.7E-06 41.1 2.0 53 137-190 6-63 (70)
24 d2bgwa1 a.60.2.5 (A:160-229) D 90.0 0.15 1.1E-05 38.2 4.3 47 141-189 15-64 (70)
25 d1x2ia1 a.60.2.5 (A:2-69) ATP- 89.2 0.17 1.3E-05 37.6 4.1 48 141-190 12-62 (68)
26 d1z3eb1 a.60.3.1 (B:245-311) C 87.6 0.39 2.9E-05 35.6 5.1 49 137-187 5-56 (67)
27 d1lb2b_ a.60.3.1 (B:) C-termin 87.2 0.49 3.6E-05 35.6 5.6 48 138-187 5-55 (72)
28 d2a1jb1 a.60.2.5 (B:219-296) D 83.9 0.5 3.6E-05 35.9 4.2 48 141-190 21-71 (78)
29 d1ci4a_ a.60.5.1 (A:) Barrier- 80.0 0.55 4E-05 36.4 3.1 32 135-167 14-45 (89)
30 d2q0zx1 a.289.1.1 (X:33-208) P 75.5 1.8 0.00013 37.4 5.6 49 139-188 119-170 (176)
31 d1a1ia3 g.37.1.1 (A:160-187) Z 74.6 0.22 1.6E-05 30.1 -0.5 24 451-476 4-27 (28)
32 d1bvsa2 a.60.2.1 (A:64-134) DN 60.1 1.3 9.2E-05 33.1 1.0 43 102-156 16-61 (71)
33 d2axtu1 a.60.12.2 (U:37-134) P 43.2 5.8 0.00043 31.2 2.4 30 141-171 29-59 (98)
34 d1ixra1 a.60.2.1 (A:63-135) DN 41.2 4.8 0.00035 29.9 1.5 43 102-156 17-62 (73)
35 d1vqou1 g.39.1.6 (U:4-56) Ribo 40.9 4.2 0.00031 28.4 1.0 12 452-463 2-13 (53)
36 d1dfxa2 g.41.5.2 (A:1-36) Desu 38.6 3.3 0.00024 26.5 0.1 11 449-459 5-15 (36)
37 d1cuka2 a.60.2.1 (A:65-142) DN 37.9 5.1 0.00037 30.2 1.2 43 102-156 16-61 (78)
38 d1dxga_ g.41.5.2 (A:) Desulfor 37.8 3.4 0.00025 26.4 0.1 11 449-459 5-15 (36)
39 d1x6ea2 g.37.1.1 (A:41-66) Zin 37.7 3.7 0.00027 24.5 0.3 11 450-460 2-12 (26)
40 d1vzia2 g.41.5.2 (A:1-37) Desu 37.5 3.5 0.00025 26.5 0.1 11 449-459 5-15 (37)
41 d1a1ia2 g.37.1.1 (A:132-159) Z 34.3 4.4 0.00032 24.4 0.2 11 450-460 3-13 (28)
42 d1dgsa1 a.60.2.2 (A:401-581) N 34.2 14 0.001 31.9 3.7 44 140-184 42-89 (181)
43 d1kbea_ g.49.1.1 (A:) Kinase s 32.2 4.7 0.00034 27.5 0.1 14 444-458 22-35 (49)
44 d1faqa_ g.49.1.1 (A:) RAF-1 {H 31.6 5.7 0.00041 27.2 0.5 15 444-459 22-36 (52)
45 d1rxwa1 a.60.7.1 (A:220-324) F 30.2 14 0.001 28.8 2.8 25 143-169 20-44 (105)
46 d1xo1a1 a.60.7.1 (A:186-290) T 30.2 14 0.0011 28.9 2.9 27 141-169 21-47 (105)
47 d2cora1 g.39.1.3 (A:43-73) Pin 29.7 6.1 0.00044 24.0 0.3 18 453-470 2-19 (31)
48 d1vdda_ e.49.1.1 (A:) Recombin 29.3 8.1 0.00059 34.2 1.2 16 141-156 14-29 (199)
49 d2dlqa1 g.37.1.1 (A:93-118) GL 26.4 6.7 0.00049 22.4 0.0 9 450-458 2-10 (26)
50 d1x6ha2 g.37.1.1 (A:8-43) Tran 26.1 7.5 0.00055 24.6 0.3 11 450-460 8-18 (36)
51 d1dgsa1 a.60.2.2 (A:401-581) N 25.8 35 0.0025 29.2 4.9 50 132-186 103-155 (181)
52 d2adra1 g.37.1.1 (A:102-130) A 25.4 8.7 0.00063 23.2 0.5 11 450-460 2-12 (29)
53 d2cota2 g.37.1.1 (A:7-44) Zinc 25.0 9.3 0.00068 24.4 0.6 11 450-460 12-22 (38)
54 d1znfa_ g.37.1.1 (A:) XFIN, th 24.9 8.8 0.00064 21.9 0.4 13 451-467 1-13 (26)
55 d1sp1a_ g.37.1.1 (A:) Transcri 24.3 9.5 0.00069 23.0 0.5 11 450-460 2-12 (29)
56 d1i9ga_ c.66.1.13 (A:) Probabl 24.0 94 0.0069 27.8 7.9 68 4-71 85-178 (264)
57 d1njqa_ g.37.1.3 (A:) SUPERMAN 23.8 6.3 0.00046 25.4 -0.5 14 450-463 5-18 (37)
58 d3bzka1 a.60.2.6 (A:474-563) T 23.4 15 0.0011 28.0 1.6 30 141-171 37-71 (90)
59 d2ct1a2 g.37.1.1 (A:8-43) Tran 22.1 9.8 0.00072 24.0 0.2 11 450-460 8-18 (36)
60 d2fmpa1 a.60.6.1 (A:10-91) DNA 22.0 15 0.0011 27.5 1.3 17 141-157 50-66 (82)
61 d1a77a1 a.60.7.1 (A:209-316) F 22.0 19 0.0014 28.1 2.1 26 142-169 20-45 (108)
62 d2f4ma1 d.3.1.4 (A:164-450) Pe 21.7 17 0.0012 33.8 2.0 18 442-459 73-90 (287)
63 d2bcqa1 a.60.6.1 (A:252-327) D 20.6 16 0.0012 26.6 1.3 17 141-157 48-64 (76)
64 d2duya1 a.60.2.7 (A:11-75) Unc 20.6 24 0.0017 25.0 2.2 29 141-170 19-48 (65)
65 d1srka_ g.37.1.1 (A:) Zinc fin 20.5 11 0.00081 23.7 0.3 11 450-460 7-17 (35)
66 d1p7aa_ g.37.1.1 (A:) Kruppel- 20.4 12 0.0009 23.6 0.5 11 450-460 11-21 (37)
No 1
>d1t94a2 e.8.1.7 (A:75-407) DNA polymerase kappa {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00 E-value=3.3e-47 Score=391.87 Aligned_cols=195 Identities=54% Similarity=0.906 Sum_probs=182.4
Q ss_pred ccCHHHHHcCCCCCCcHHHHHhhCCCeEEEcCChHHHHHHHHHHHHHHHhcCCCeEeeCccEEEEEcCccchh-------
Q 009298 3 FELLSARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRE------- 75 (538)
Q Consensus 3 ~~syeAR~~GVr~GM~l~~A~~LCP~Lvvvp~d~~~Y~~~s~~l~~il~~~sp~Ve~~SiDEafLDlT~~~~l------- 75 (538)
-|||+||++||++||++++|+++||+++++++|++.|+++|+++++++.+|+|.||++|+||+|||+|+....
T Consensus 64 a~nY~AR~~GVk~gm~i~eA~~lCP~lii~~~d~~~Yr~~S~~i~~il~~~~~~vE~~SIDE~flDlT~~~~~~~~~~~~ 143 (333)
T d1t94a2 64 TSNYHARRFGVRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYLNITKHLEERQNWPED 143 (333)
T ss_dssp EECHHHHHTTCCTTCCHHHHHHHCTTCEEECCCHHHHHHHHHHHHHHHHHHCTTCEECSSSEEEEECHHHHHHHTTCCGG
T ss_pred ECCHHHHHhCCCCCCcHHHHHHhCCCcEEEcCcHHHHHHHHHHHHHHHHHcCCCEEEEeccEEEEecchhhhhhcccccc
Confidence 5899999999999999999999999999999999999999999999999999999999999999999975431
Q ss_pred --------------------------------------------------------------------cCCCHHHHHHHH
Q 009298 76 --------------------------------------------------------------------RGISGIEIAEEL 87 (538)
Q Consensus 76 --------------------------------------------------------------------~g~~~~~la~~I 87 (538)
++..+.++|.+|
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~la~~I 223 (333)
T d1t94a2 144 KRRYFIKMGSSVENDNPGKEVNKLSEHERSISPLLFEESPSDVQPPGDPFQVNFEEQNNPQILQNSVVFGTSAQEVVKEI 223 (333)
T ss_dssp GSEEECCC---CCCCCCCGGGGGGSTTTTTTGGGCC----------------------CCCCCCCEEECCSSHHHHHHHH
T ss_pred hhhhhccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhhhhccccHHHHHHHH
Confidence 122467899999
Q ss_pred HHHHHHHhCCceEEEecCChhHHHHHhcccCCCCeEEecCChHHHHHhhcCCCcccccCCCHHHHHHHHhhcCCCchHHH
Q 009298 88 RTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM 167 (538)
Q Consensus 88 R~~I~~~~Glt~S~GIA~nk~lAKLAS~~aKP~G~~vl~~~~~~~~~fL~~lPl~~L~GIG~kt~~kL~~~lGI~TlgDL 167 (538)
|++|++++|||||+|||+||++||||+..+|||||+++.++.+++..||+++||++|||||+++.++|+. +||+|++||
T Consensus 224 R~~I~~etG~t~SaGIa~NK~LAKLAs~~~KPngq~~i~~~~~~~~~~l~~lpi~~i~GiG~~~~~~L~~-~gi~ti~dl 302 (333)
T d1t94a2 224 RFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPNRQAVMDFIKDLPIRKVSGIGKVTEKMLKA-LGIITCTEL 302 (333)
T ss_dssp HHHHHHHHSCCEEEEEESSHHHHHHHHHHTTTTCEEECCSSHHHHHHHHTTCBGGGCTTSCHHHHHHHHH-TTCCBHHHH
T ss_pred HHHHHHHhCCCeEEeECccHHHHHHHHHhcCcCccceecCCHHHHHHHHhCCCccccCCcCHHHHHHHHH-cCCcCHHHH
Confidence 9999999999999999999999999999999999999988766789999999999999999999999997 999999999
Q ss_pred HhchHHHHHHcChhHHHHHHHhccCCCCCCC
Q 009298 168 LQKGSLLCAVFSHSTADFFLSVGLGLGSTNT 198 (538)
Q Consensus 168 ~~lp~~L~krFG~~~~~~L~~~a~Gid~~~v 198 (538)
++.+..|.+.||...+.|||+.++|+|++.|
T Consensus 303 ~~~~~~l~~~fG~~~g~~l~~~a~GID~~~v 333 (333)
T d1t94a2 303 YQQRALLSLLFSETSWHYFLHISLGLGSTHL 333 (333)
T ss_dssp HHTHHHHHHHSCHHHHHHHHHHHTTCCCSCC
T ss_pred hcCHHHHHHHhCHHHHHHHHHHhcCCCCCCC
Confidence 9987889999999989999999999998754
No 2
>d1jx4a2 e.8.1.7 (A:1-240) DinB homolog (DBH) {Archaeon Sulfolobus solfataricus, DNA polymerase IV [TaxId: 2287]}
Probab=100.00 E-value=8.4e-47 Score=372.55 Aligned_cols=195 Identities=27% Similarity=0.480 Sum_probs=187.7
Q ss_pred CccCHHHHHcCCCCCCcHHHHHhhCCCeEEEcCChHHHHHHHHHHHHHHHhcCCCeEeeCccEEEEEcCccchhcCCCHH
Q 009298 2 RFELLSARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 81 (538)
Q Consensus 2 ~~~syeAR~~GVr~GM~l~~A~~LCP~Lvvvp~d~~~Y~~~s~~l~~il~~~sp~Ve~~SiDEafLDlT~~~~l~g~~~~ 81 (538)
..|||+||++||++||++++|+++||+|+++++|++.|+++++.+++++..|+|.||++|+||+|+|+|+..+.++ .+.
T Consensus 44 ~a~ny~Ar~~GV~~gm~~~~A~~~cP~l~~~~~~~~~y~~~s~~i~~~l~~~~~~ve~~siDE~~ldl~~~~~~~~-~~~ 122 (240)
T d1jx4a2 44 ATANYEARKFGVKAGIPIVEAKKILPNAVYLPMRKEVYQQVSSRIMNLLREYSEKIEIASIDEAYLDISDKVRDYR-EAY 122 (240)
T ss_dssp EEECHHHHTTTCCTTSBHHHHHHHCTTSEEEECCHHHHHHHHHHHHHHHTTTCSCEEEEETTEEEEECTTTCSSHH-HHH
T ss_pred EecCHHHHHhCCcccCChhhhhccccccccccccHHHHHHHHHHHHHHHHhhcceeeeccchhhhhcccccccccc-cHH
Confidence 3689999999999999999999999999999999999999999999999999999999999999999999999888 789
Q ss_pred HHHHHHHHHHHHHhCCceEEEecCChhHHHHHhcccCCCCeEEecCChHHHHHhhcCCCcccccCCCHHHHHHHHhhcCC
Q 009298 82 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGI 161 (538)
Q Consensus 82 ~la~~IR~~I~~~~Glt~S~GIA~nk~lAKLAS~~aKP~G~~vl~~~~~~~~~fL~~lPl~~L~GIG~kt~~kL~~~lGI 161 (538)
++|++||++|++++|++||+|||+||++||||++.+||+|+++++++ ++.+||+++||++|||||+++.++|++ +||
T Consensus 123 ~~a~~i~~~i~~~~g~~~siGia~nk~lAKlAs~~~KP~g~~vi~~~--~~~~~L~~lpl~~l~GiG~~~~~~L~~-~Gi 199 (240)
T d1jx4a2 123 NLGLEIKNKILEKEKITVTVGISKNKVFAKIAADMAKPNGIKVIDDE--EVKRLIRELDIADVPGIGNITAEKLKK-LGI 199 (240)
T ss_dssp HHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHHHCSSCEEECCHH--HHHHHHHHSBGGGSTTCCHHHHHHHHT-TTC
T ss_pred HHHHHHHHHHHHhhccccceeecchhhHHHHHhhhcccceeeecccc--cccccccccchhhcCCCCHHHHHHHHH-hCC
Confidence 99999999999999999999999999999999999999999999764 789999999999999999999999997 999
Q ss_pred CchHHHHhch-HHHHHHcChhHHHHHHHhccCCCCCCCCC
Q 009298 162 NTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLGSTNTPQ 200 (538)
Q Consensus 162 ~TlgDL~~lp-~~L~krFG~~~~~~L~~~a~Gid~~~v~~ 200 (538)
+|++||+++| ..|.++||...+.+||++++|+|.+||.+
T Consensus 200 ~t~gdl~~~~~~~L~~~fG~~~g~~l~~~a~G~d~~pV~~ 239 (240)
T d1jx4a2 200 NKLVDTLSIEFDKLKGMIGEAKAKYLISLARDEYNEPIRT 239 (240)
T ss_dssp CBGGGGGSSCHHHHHHHHCHHHHHHHHHHHTTCCCCCCCC
T ss_pred CcHHHHHcCCHHHHHHHHCHHHHHHHHHHHcCCCCCCCCC
Confidence 9999999999 89999999888999999999999998864
No 3
>d1zeta2 e.8.1.7 (A:27-299) DNA polymerase iota {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00 E-value=1e-46 Score=378.69 Aligned_cols=199 Identities=32% Similarity=0.471 Sum_probs=184.2
Q ss_pred ccCHHHHHcCCCCCCcHHHHHhhCCCeEEE-cCChHHHHHHHHHHHHHHHhcCCCeEeeCccEEEEEcCccchhc-----
Q 009298 3 FELLSARRFGVRAAMPGFIARKLCPELIFV-PTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER----- 76 (538)
Q Consensus 3 ~~syeAR~~GVr~GM~l~~A~~LCP~Lvvv-p~d~~~Y~~~s~~l~~il~~~sp~Ve~~SiDEafLDlT~~~~l~----- 76 (538)
-|||+||++||++||++++|+++||+++++ ++|++.|+++|+++++++.+|+|.||.+|+||+|||+|++....
T Consensus 39 a~sy~AR~~GVk~gm~~~~A~~~cP~l~v~~~~~~~~Y~~~S~~i~~~l~~~~~~ve~~SiDE~flDlt~~~~~~~~~~~ 118 (273)
T d1zeta2 39 TCNYEARKLGVKKLMNVRDAKEKCPQLVLVNGEDLTRYREMSYKVTELLEEFSPVVERLGFDENFVDLTEMVEKRLQQLQ 118 (273)
T ss_dssp EECHHHHTTTCCSCBCHHHHHHTCTTCCCEECCCCHHHHHHHHHHHHHHHHHCSCEEEETTTEEEEECHHHHHHHHHHSC
T ss_pred EeCHHHHHhCCCCCCCHHHHHHhCccccccccccHHHHHHHHHHHHHHHHHhCCeeEEEcCcceEEeccccccccccccc
Confidence 589999999999999999999999999877 58999999999999999999999999999999999999865321
Q ss_pred --------------C--------------CCHHHHHHHHHHHHHHHhCCceEEEecCChhHHHHHhcccCCCCeEEecCC
Q 009298 77 --------------G--------------ISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPND 128 (538)
Q Consensus 77 --------------g--------------~~~~~la~~IR~~I~~~~Glt~S~GIA~nk~lAKLAS~~aKP~G~~vl~~~ 128 (538)
+ ..+..+|++||++|++++|+|||+|||+||++||||++.+||||++++.++
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~a~~ir~~I~~~~g~~~svGIa~nk~lAKlAs~~~KP~g~~vi~~~ 198 (273)
T d1zeta2 119 SDELSAVTVSGHVYNNQSINLLDVLHIRLLVGSQIAAEMREAMYNQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPE 198 (273)
T ss_dssp SSGGGGCCCCSEEGGGCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHTSSCSSCEEECCGG
T ss_pred cchhhcccccccccccccccchhhhhhhcccHHHHHHHHHHHHHHHhCCCeEeeecCcHHHHHHHhhccccccccchhhh
Confidence 0 024789999999999999999999999999999999999999999999886
Q ss_pred hHHHHHhhcCC-CcccccCCCHHHHHHHHhhcCCCchHHHHhch-HHHHHHcChhHHHHHHHhccCCCCCCCCCCCCC
Q 009298 129 RMAVMTFISSL-PIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLGSTNTPQARFR 204 (538)
Q Consensus 129 ~~~~~~fL~~l-Pl~~L~GIG~kt~~kL~~~lGI~TlgDL~~lp-~~L~krFG~~~~~~L~~~a~Gid~~~v~~~~~p 204 (538)
++..||+++ ||++|||||+++.++|++ +||+|++||+++| ..|.++||...+.+||+.++|+|++||.+..+|
T Consensus 199 --~~~~~l~~l~pv~~l~GiG~~~~~~L~~-~GI~ti~dl~~~~~~~L~~~fG~~~g~~l~~~a~G~D~~pV~~~~~P 273 (273)
T d1zeta2 199 --SCQHLIHSLNHIKEIPGIGYKTAKCLEA-LGINSVRDLQTFSPKILEKELGISVAQRIQKLSFGEDNSPVILSGPP 273 (273)
T ss_dssp --GHHHHHTTCSSGGGSTTCCHHHHHHHHT-TTCCSHHHHHHSCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCCCCSC
T ss_pred --hHHHHHhcCcchHHhcCCCHHHHHHHHH-hCCCcHHHHhcCCHHHHHHHHCHHHHHHHHHHHcCcCCCCCCCCCCC
Confidence 789999998 899999999999999997 9999999999998 899999999888999999999999999877665
No 4
>d1im4a_ e.8.1.7 (A:) DinB homolog (DBH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Probab=100.00 E-value=4.4e-43 Score=338.97 Aligned_cols=161 Identities=35% Similarity=0.556 Sum_probs=153.8
Q ss_pred ccCHHHHHcCCCCCCcHHHHHhhCCCeEEEcCChHHHHHHHHHHHHHHHhcCCCeEeeCccEEEEEcCccchhcCCCHHH
Q 009298 3 FELLSARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 82 (538)
Q Consensus 3 ~~syeAR~~GVr~GM~l~~A~~LCP~Lvvvp~d~~~Y~~~s~~l~~il~~~sp~Ve~~SiDEafLDlT~~~~l~g~~~~~ 82 (538)
.|||+||++||++|||+++|+++||+++++++|++.|+++++++++++.+|+|.||++|+||+|||+|+..+.+..++..
T Consensus 49 a~sy~Ar~~GI~~gm~~~~A~~~cP~l~~v~~~~~~Y~~~s~~i~~il~~~~p~ve~~SiDE~fldlt~~~~~~~~~~~~ 128 (209)
T d1im4a_ 49 TANYEARKLGVKAGMPIIKAMQIAPSAIYVPMRKPIYEAFSNRIMNLLNKHADKIEVASIDEAYLDVTNKVEGNFENGIE 128 (209)
T ss_dssp EECHHHHTTTCCTTCBHHHHHHHCTTSEEEECCHHHHHHHHHHHHHHHHTTCSEEEEEETTEEEEECTTTTTTCHHHHHH
T ss_pred EcCHHHHHhCCCcchhHHHHHhhCCcccccCccHHHHHHHHHHHHHHHHhcCCceeeccccceeeeeccchhhccchHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999987655436789
Q ss_pred HHHHHHHHHHHHhCCceEEEecCChhHHHHHhcccCCCCeEEecCChHHHHHhhcCCCcccccCCCHHHHHHHHhhcCCC
Q 009298 83 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGIN 162 (538)
Q Consensus 83 la~~IR~~I~~~~Glt~S~GIA~nk~lAKLAS~~aKP~G~~vl~~~~~~~~~fL~~lPl~~L~GIG~kt~~kL~~~lGI~ 162 (538)
+|++||++|++++|++||+|||+||++||||++.+||||++++.++ ++.+||+++||++|||||+++.++|++ +||+
T Consensus 129 ~a~~ir~~I~~~~gl~~SiGIa~nk~lAKias~~~KP~g~~~i~~~--~~~~~L~~lpi~~i~GIG~~~~~~L~~-~Gi~ 205 (209)
T d1im4a_ 129 LARKIKQEILEKEKITVTVGVAPNKILAKIIADKSKPNGLGVIRPT--EVQDFLNELDIDEIPGIGSVLARRLNE-LGIQ 205 (209)
T ss_dssp HHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHHTCSSCEEECCGG--GHHHHHHTCBGGGSTTCCHHHHHHHHH-TTCC
T ss_pred HHHHHHHHHHHhcCCceeeccccchhhHHHHHhccCCceEEEECHH--HHHHHHhCCCceeeCCchHHHHHHHHH-cCCc
Confidence 9999999999999999999999999999999999999999999875 789999999999999999999999997 9999
Q ss_pred chHH
Q 009298 163 TCEE 166 (538)
Q Consensus 163 TlgD 166 (538)
|++|
T Consensus 206 Ti~D 209 (209)
T d1im4a_ 206 KLRD 209 (209)
T ss_dssp BTTC
T ss_pred cccC
Confidence 9986
No 5
>d1jiha2 e.8.1.7 (A:1-389) DNA polymerase eta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=100.00 E-value=9.5e-41 Score=349.40 Aligned_cols=168 Identities=24% Similarity=0.350 Sum_probs=151.9
Q ss_pred CccCHHHHHcCCCCCCcHHHHHhhCCCeEEE----------------------------------cCChHHHHHHHHHHH
Q 009298 2 RFELLSARRFGVRAAMPGFIARKLCPELIFV----------------------------------PTDFTKYTYYSDLTR 47 (538)
Q Consensus 2 ~~~syeAR~~GVr~GM~l~~A~~LCP~Lvvv----------------------------------p~d~~~Y~~~s~~l~ 47 (538)
.-|||+||++||++||++++|+++||+|+++ ++|++.|+++|++++
T Consensus 60 ia~sYeAR~~GVk~gm~~~eA~k~CP~li~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~Yr~~S~~v~ 139 (389)
T d1jiha2 60 IAVSYAARKYGISRMDTIQEALKKCSNLIPIHTAVFKKGEDFWQYHDGCGSWVQDPAKQISVEDHKVSLEPYRRESRKAL 139 (389)
T ss_dssp EEECHHHHTTTCCTTSCHHHHHHHCTTCEEEECCEEETTCSSEECCTTCSTTCSCTTSCCCSSSEEECCHHHHHHHHHHH
T ss_pred EEECHHHHHhCCCCCCcHHHHHHhCCcceEeecccccccccccccccccccccccchhcccccccCCCHHHHHHHHHHHH
Confidence 3589999999999999999999999999998 568999999999999
Q ss_pred HHHHhcCCCeEeeCccEEEEEcCccchhcC--------------------------------------------------
Q 009298 48 KVFCKYDPNFMAASLDEAYLDITEVCRERG-------------------------------------------------- 77 (538)
Q Consensus 48 ~il~~~sp~Ve~~SiDEafLDlT~~~~l~g-------------------------------------------------- 77 (538)
+++.+|+|.||++||||+|||||+......
T Consensus 140 ~il~~~~~~vE~~SIDEaflDlT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (389)
T d1jiha2 140 KIFKSACDLVERASIDEVFLDLGRICFNMLMFDNEYELTGDLKLKDALSNIREAFIGGNYDINSHLPLIPEKIKSLKFEG 219 (389)
T ss_dssp HHHHHHCSCEEEEETTEEEEECHHHHHHHHHHCCSCBSSSSCBHHHHTHHHHHHHHHCCSCTTSBCCCCCGGGGGCCCCS
T ss_pred HHHHHhCCCeeEeecceEEEEcchhhhhccccccchhccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999999999999997543210
Q ss_pred -------------------CCHHHHHHHHHHHHHHHhCCceEEEecCChhHHHHHhcccCCCCeEEecCChHHHHHhhc-
Q 009298 78 -------------------ISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFIS- 137 (538)
Q Consensus 78 -------------------~~~~~la~~IR~~I~~~~Glt~S~GIA~nk~lAKLAS~~aKP~G~~vl~~~~~~~~~fL~- 137 (538)
..+..+|.+||++|+++||||||+|||+||++||||++.+|||||+++.++ ++.+||+
T Consensus 220 ~~~~~~~~~~~~~~~d~~l~~g~~ia~~IR~~I~~etGlt~S~GIa~NK~LAKlAs~~~KPngqtvl~~~--~v~~fl~~ 297 (389)
T d1jiha2 220 DVFNPEGRDLITDWDDVILALGSQVCKGIRDSIKDILGYTTSCGLSSTKNVCKLASNYKKPDAQTIVKND--CLLDFLDC 297 (389)
T ss_dssp EECCTTCCCSCCSHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEESSHHHHHHHHTTTCSSCEEECCGG--GHHHHHTS
T ss_pred ccccccccccccchhhhhhhHHHHHHHHHHHHHHHHhCCCceecccccHHHHHHHHHhcCCCceEeeCHH--HHHHHHHh
Confidence 014578999999999999999999999999999999999999999999886 7899995
Q ss_pred -CCCcccccCCCHHHHHHHHhhcCCCchHHHHhch
Q 009298 138 -SLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG 171 (538)
Q Consensus 138 -~lPl~~L~GIG~kt~~kL~~~lGI~TlgDL~~lp 171 (538)
++||++|||||++++++|.+.|||.|++||+++.
T Consensus 298 ~~lpi~ki~GIG~k~~kkL~~~lgi~t~~di~~l~ 332 (389)
T d1jiha2 298 GKFEITSFWTLGGVLGKELIDVLDLPHENSIKHIR 332 (389)
T ss_dssp SSCCGGGSGGGSSHHHHHHHHHTTCCSSSHHHHHH
T ss_pred cCCChhhcCCCCHHHHHHHHHHhCCCccccHHHHH
Confidence 7999999999999999996559999999998764
No 6
>d1t94a1 d.240.1.1 (A:411-515) DNA polymerase kappa {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.58 E-value=4.2e-16 Score=132.39 Aligned_cols=98 Identities=46% Similarity=0.683 Sum_probs=85.1
Q ss_pred CCccceeeeccCccCCHHHHHHHHHHHHHHHHHHHHHhCCCccEEEEEEEEcCCceeEEEEecCCCCCCHHHHHHHHHHH
Q 009298 203 FRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL 282 (538)
Q Consensus 203 ~pKSIs~e~tF~~~~d~e~L~~~L~~Lae~L~~RLr~~gl~~rtLtL~Lr~~d~~~~srs~~L~~~t~~~~~L~~~a~~L 282 (538)
++||||+++||....+.+++...|..|+++|+.||++.++.+++|+|++++++|...+++.+++.|+++.++|+..|..|
T Consensus 2 erKSis~e~Tf~d~~~~~~i~~~l~~L~~~v~~rlr~~~~~~rtv~lkir~~df~~~trs~tl~~~t~~~~~i~~~a~~L 81 (105)
T d1t94a1 2 ERKSMSVERTFSEINKAEEQYSLCQELCSELAQDLQKERLKGRTVTIKLKNVNFEVKTRASTVSSVVSTAEEIFAIAKEL 81 (105)
T ss_dssp --CCEEEEEEEEEECCHHHHHHHHHHHHSSTTCCCC---CCCSCEEEEEEETTCCEEEECC-CCCCCCC--CHHHHHHHH
T ss_pred CCCccccccccccCCCHHHHHHHHHHHHHHHHHHHHHcCCCccEEEEEEEeCCCceeEEEEEcCccCCCHHHHHHHHHHH
Confidence 57999999999767899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhC------CCCEEEEEEEecC
Q 009298 283 LKAEL------PVSLRLIGLRVTQ 300 (538)
Q Consensus 283 L~~~l------p~~VR~IGV~ls~ 300 (538)
|++.+ +.+||+|||+++|
T Consensus 82 l~~~~~~~~~~~~~iRLlGv~vsn 105 (105)
T d1t94a1 82 LKTEIDADFPHPLRLRLMGVRISS 105 (105)
T ss_dssp HHHHHSSSTTSCCCEEEEEEEECC
T ss_pred HHHHHhccCCCCCCEEEEEEEEeC
Confidence 99864 2489999999986
No 7
>d1jx4a1 d.240.1.1 (A:241-341) DinB homolog (DBH) {Archaeon Sulfolobus solfataricus, DNA polymerase IV [TaxId: 2287]}
Probab=99.51 E-value=6.5e-14 Score=118.40 Aligned_cols=96 Identities=21% Similarity=0.203 Sum_probs=84.1
Q ss_pred CccceeeeccCc-cCCHHHHHHHHHHHHHHHHHHHHHhCCCccEEEEEEEEcCCceeEEEEecCCCCCCHHHHHHHHHHH
Q 009298 204 RKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL 282 (538)
Q Consensus 204 pKSIs~e~tF~~-~~d~e~L~~~L~~Lae~L~~RLr~~gl~~rtLtL~Lr~~d~~~~srs~~L~~~t~~~~~L~~~a~~L 282 (538)
+||||+|.||+. ..+.+++...|..|+++|+.||+ +..+++|+|++++++|.+.+++.+++.|+++ .+++..+..+
T Consensus 2 rKSig~e~Tf~~D~~~~~ei~~~l~~L~~~v~~rl~--~~~~rTVtlKik~~dF~t~Trs~tl~~~t~~-~~~~~~~~~l 78 (101)
T d1jx4a1 2 RKSIGRIVTMKRNSRNLEEIKPYLFRAIEESYYKLD--KRIPKAIHVVAVTEDLDIVSRGRTFPHGISK-ETAYSESVKL 78 (101)
T ss_dssp CCEEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHT--TCCEEEEEEEEEETTSCEEEEEEECSSCCCH-HHHHHHHHHH
T ss_pred CCcccCcEeCCCCccCHHHHHHHHHHHHHHHHHHhh--hcccceEEEEEEECCCeEEeeecccCCccch-HHHHHHHHHH
Confidence 699999999998 69999999999999999999985 5689999999999999999999999999976 5555666666
Q ss_pred HHhh-C--CCCEEEEEEEecCCC
Q 009298 283 LKAE-L--PVSLRLIGLRVTQFN 302 (538)
Q Consensus 283 L~~~-l--p~~VR~IGV~ls~L~ 302 (538)
|.+. + ..+||+|||++++|.
T Consensus 79 L~~~~~~~~~~vRLiGV~~s~Lv 101 (101)
T d1jx4a1 79 LQKILEEDERKIRRIGVRFSKFI 101 (101)
T ss_dssp HHHHHHHCCSCEEEEEEEEEEEC
T ss_pred HHHHhhcCCCCEEEEEEEeeecC
Confidence 6554 2 369999999999984
No 8
>d1unnc_ d.240.1.1 (C:) DNA polymerase IV {Escherichia coli [TaxId: 562]}
Probab=99.45 E-value=5.4e-13 Score=114.31 Aligned_cols=105 Identities=20% Similarity=0.203 Sum_probs=92.1
Q ss_pred ccceeeeccCc-cCCHHHHHHHHHHHHHHHHHHHHHhC--CCccEEEEEEEEcCCceeEEEEecCCCCCCHHHHHHHHHH
Q 009298 205 KSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEG--LRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASV 281 (538)
Q Consensus 205 KSIs~e~tF~~-~~d~e~L~~~L~~Lae~L~~RLr~~g--l~~rtLtL~Lr~~d~~~~srs~~L~~~t~~~~~L~~~a~~ 281 (538)
.+||+|.||+. ..+.+++...|..|+++|+.||++++ ..+++|+|++++++|.+.+++.+++. .+.++|+..+..
T Consensus 1 ~~IG~E~Tf~~Dl~~~~~~~~~l~~L~~~v~~Rl~k~~~~~~~~tv~lKik~~dF~~~Tr~~~~~~--~~~~~i~~~~~~ 78 (111)
T d1unnc_ 1 HHVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQEHVWPR--LNKADLIATARK 78 (111)
T ss_dssp CEEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCTTCBCSEEEEEEEETTSCEEEEEEECSB--CCHHHHHHHHHH
T ss_pred CCCCCcccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhccceEEEEEEEecCCceEEEEcccCCC--CCHHHHHHHHHH
Confidence 37999999998 79999999999999999999999876 47889999999999999999999865 467899999999
Q ss_pred HHHhhC-CCCEEEEEEEecCCCcCcccCCCCcccccH
Q 009298 282 LLKAEL-PVSLRLIGLRVTQFNEDKVRAPSDPTQKTL 317 (538)
Q Consensus 282 LL~~~l-p~~VR~IGV~ls~L~~~~~~~~~~~~Q~tI 317 (538)
+|++.+ +.+||+|||+++++.+.. +.|.+|
T Consensus 79 ll~~~~~~~piRLlGV~v~~l~~~~------~~QlsL 109 (111)
T d1unnc_ 79 TWDERRGGRGVRLVGLHVTLLDPQM------ERQLVL 109 (111)
T ss_dssp HHHHHCTTCCEEEEEEEEECCCCCC------CCBCCC
T ss_pred HHHhcccCCCEeEEEEEeecCCCCC------cccCCC
Confidence 998875 579999999999987653 457665
No 9
>d1k1sa1 d.240.1.1 (A:240-344) DinB homolog (DBH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Probab=99.43 E-value=2.6e-13 Score=115.42 Aligned_cols=98 Identities=15% Similarity=0.148 Sum_probs=86.0
Q ss_pred CCCccceeeeccCc-cCCHHHHHHHHHHHHHHHHHHHHHhCCCccEEEEEEEEcCCceeEEEEecCCCCCCHHHHHHHHH
Q 009298 202 RFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHAS 280 (538)
Q Consensus 202 ~~pKSIs~e~tF~~-~~d~e~L~~~L~~Lae~L~~RLr~~gl~~rtLtL~Lr~~d~~~~srs~~L~~~t~~~~~L~~~a~ 280 (538)
+.+||+|.+.||+. ..+.+.+...|.+++++++.++ +..+++|+|+++++||.+.+++.+++.|++ .+.++..+.
T Consensus 2 rerks~G~e~Tf~~D~~d~~~i~~~L~~l~~~~~~r~---~~~~kTvtlkik~~dF~t~TRs~tl~~~t~-~~~i~~~a~ 77 (105)
T d1k1sa1 2 KSKIPHGRYLTLPYNTRDVKVILPYLKKAINEAYNKV---NGIPMRITVIAIMEDLDILSKGKKFKHGIS-IDNAYKVAE 77 (105)
T ss_dssp EECCCEEEEEEEEEEECCHHHHHHHHHHHHHHHHHTC---SSBCSEEEEEEEETTTEEEEEEEECSSCCC-HHHHHHHHH
T ss_pred CCccccCCceeCCCcccCHHHHHHHHHHHHHHHHHHh---hhheeEEEEEEEeCCCceeeeeccCCCCcc-HHHHHHHHH
Confidence 46899999999998 6899999999998888876554 578899999999999999999999999996 578899999
Q ss_pred HHHHhhC----CCCEEEEEEEecCCCc
Q 009298 281 VLLKAEL----PVSLRLIGLRVTQFNE 303 (538)
Q Consensus 281 ~LL~~~l----p~~VR~IGV~ls~L~~ 303 (538)
.||...+ ..+||+|||++++|..
T Consensus 78 ~LL~~~~~~~~~~~iRLiGV~~s~LV~ 104 (105)
T d1k1sa1 78 DLLRELLVRDKRRNVRRIGVKLDNIII 104 (105)
T ss_dssp HHHHHHHTTCCSCCEEEEEEEEECEEC
T ss_pred HHHHHHhcccCCCeEEEEEEEeehccc
Confidence 9998763 2589999999999864
No 10
>d1zeta1 d.240.1.1 (A:300-414) DNA polymerase iota {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.31 E-value=1.6e-14 Score=125.07 Aligned_cols=98 Identities=16% Similarity=0.228 Sum_probs=85.6
Q ss_pred ccceeeeccCccCCHHHHHHHHHHHHHHHHHHHHHhCCCccEEEEEEEEcCCceeEE----EEecCCC---------CCC
Q 009298 205 KSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTR----AVTLQKY---------ISS 271 (538)
Q Consensus 205 KSIs~e~tF~~~~d~e~L~~~L~~Lae~L~~RLr~~gl~~rtLtL~Lr~~d~~~~sr----s~~L~~~---------t~~ 271 (538)
||||.|.||..+.+.+++...|..|+++|+.||++.|+.+++|+|++++.+|.+.++ +.++|.+ +++
T Consensus 1 KSis~E~TF~~~~~~~ei~~~l~~L~~~v~~rl~~~~~~~rtv~lkir~~df~t~tr~~t~~~pip~~~~~~~~~~~~~~ 80 (115)
T d1zeta1 1 QSFSEEDSFKKCSSEVEAKNKIEELLASLLNRVCQDGRKPHTVRLIIRRYSSEKHYGRESRQCPIPSHVIQKLGTGNYDV 80 (115)
T ss_dssp SBCCCCCSSSSSCCCCCCSHHHHTTTSHHHHTSTTTTCCBCEEEECCCCSCSTTTCCCCCCEEECCCTTTTCSSSCCGGG
T ss_pred CCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCccEEEEEEECCCCceeeeeeeccCCCcchhhhccccccchh
Confidence 799999999878899999999999999999999999999999999999999987554 4444432 456
Q ss_pred HHHHHHHHHHHHHhhC----CCCEEEEEEEecCCC
Q 009298 272 SEDILKHASVLLKAEL----PVSLRLIGLRVTQFN 302 (538)
Q Consensus 272 ~~~L~~~a~~LL~~~l----p~~VR~IGV~ls~L~ 302 (538)
.+.|++.+..||++++ |.+||++||++++|+
T Consensus 81 ~~~l~~~a~~L~~~~~~~~~~~~iRLlGV~~snl~ 115 (115)
T d1zeta1 81 MTPMVDILMKLFRNMVNVKMPFHLTLLSVCFCNLK 115 (115)
T ss_dssp HHHHHHHHHHHSTTSCTTSSCSSSSCCCEECBCBC
T ss_pred hHHHHHHHHHHHHHhccccCCCcEEEEEEEeecCC
Confidence 7999999999999976 357999999999985
No 11
>d1jiha1 d.240.1.1 (A:390-509) DNA polymerase eta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=99.25 E-value=1.6e-11 Score=106.68 Aligned_cols=100 Identities=20% Similarity=0.203 Sum_probs=88.6
Q ss_pred CCccceeeeccCc--cCCHHHHHHHHHHHHHHHHHHHHH------hCCCccEEEEEEEEcCCceeEEEEecCCCCCC--H
Q 009298 203 FRKSISSERTFSV--TEDKALLYRKLAEIAEMLSADMQK------EGLRGRTLTLKLKTASFEVRTRAVTLQKYISS--S 272 (538)
Q Consensus 203 ~pKSIs~e~tF~~--~~d~e~L~~~L~~Lae~L~~RLr~------~gl~~rtLtL~Lr~~d~~~~srs~~L~~~t~~--~ 272 (538)
.+|||+++++|+. +.+.+++..||..|+.+|+.||.+ +...++||+|++++.++.+.||+.+++.++.+ .
T Consensus 2 ~~KSm~s~K~F~~~~~~s~~~~~~WL~~la~el~~RL~~~~~~~~~~~~~kTltl~~r~~~~~~~SRs~~i~~~~~~~~~ 81 (120)
T d1jiha1 2 VVKSMMSNKNLRGKSCNSIVDCISWLEVFCAELTSRIQDLEQEYNKIVIPRTVSISLKTKSYEVYRKSGPVAYKGINFQS 81 (120)
T ss_dssp CCCCEEEEEECCTTTTCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEEECTTCCEEEEEEECCCSSSSCHH
T ss_pred CCcccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccEEEEEEEeCCCCEecceeecCCCcccccH
Confidence 4799999999974 799999999999999999999987 35679999999999999999999999877664 5
Q ss_pred HHHHHHHHHHHHhhC-------CCCEEEEEEEecCCC
Q 009298 273 EDILKHASVLLKAEL-------PVSLRLIGLRVTQFN 302 (538)
Q Consensus 273 ~~L~~~a~~LL~~~l-------p~~VR~IGV~ls~L~ 302 (538)
++|+..+..||+++. ..|||++||++++|+
T Consensus 82 ~~i~~~a~~LL~~l~~~~~~~~~~Pi~~LglSvSnFe 118 (120)
T d1jiha1 82 HELLKVGIKFVTDLDIKGKNKSYYPLTKLSMTITNFD 118 (120)
T ss_dssp HHHHHHHHHHHHHHHHHTSSSSCSSCSEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhhccccCccCeeEEEEEEEcce
Confidence 889999999998752 158999999999986
No 12
>d2i1qa1 a.60.4.1 (A:5-64) DNA repair protein Rad51, N-terminal domain {Archaeon Methanococcus voltae [TaxId: 2188]}
Probab=96.93 E-value=0.00043 Score=51.47 Aligned_cols=50 Identities=16% Similarity=0.192 Sum_probs=41.8
Q ss_pred cccccCCCHHHHHHHHhhcCCCchHHHHhch-HHHHHH--cChhHHHHHHHhcc
Q 009298 141 IRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAV--FSHSTADFFLSVGL 191 (538)
Q Consensus 141 l~~L~GIG~kt~~kL~~~lGI~TlgDL~~lp-~~L~kr--FG~~~~~~L~~~a~ 191 (538)
|.+|||||++++++|.+ .|+.|+.+|+..+ ..|.+. ||...+..+...++
T Consensus 1 L~~IpGIG~~~a~~L~~-~G~~tv~~l~~a~~eeL~~i~Gi~~~~A~~i~~~ar 53 (60)
T d2i1qa1 1 LTDLPGVGPSTAEKLVE-AGYIDFMKIATATVGELTDIEGISEKAAAKMIMGAR 53 (60)
T ss_dssp CTTSTTCCHHHHHHHHH-HTCCSHHHHHTCCHHHHHTSTTCCHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHH-ccCCCHHHHHhCCHHHHHHCCCCCHHHHHHHHHHHH
Confidence 57899999999999997 8999999999987 788876 67777777765543
No 13
>d1pzna1 a.60.4.1 (A:35-95) DNA repair protein Rad51, N-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=95.87 E-value=0.0057 Score=45.24 Aligned_cols=50 Identities=28% Similarity=0.319 Sum_probs=39.9
Q ss_pred CcccccCCCHHHHHHHHhhcCCCchHHHHhch-HHHHHHc--ChhHHHHHHHhc
Q 009298 140 PIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVF--SHSTADFFLSVG 190 (538)
Q Consensus 140 Pl~~L~GIG~kt~~kL~~~lGI~TlgDL~~lp-~~L~krF--G~~~~~~L~~~a 190 (538)
.|.+|||||++++++|.. .|+.|+.+|+..+ ..|.+.- |...+..+...+
T Consensus 2 ~L~~i~GIG~~~a~~L~~-~g~~sv~~l~~a~~~eL~~i~Gi~~~~A~~i~~~a 54 (61)
T d1pzna1 2 SIEDLPGVGPATAEKLRE-AGYDTLEAIAVASPIELKEVAGISEGTALKIIQAA 54 (61)
T ss_dssp CSSCCTTCCHHHHHHHHT-TTCCSHHHHHTCCHHHHHHHHCCCHHHHHHHHHHH
T ss_pred ccccCCCCCHHHHHHHHH-hcCCCHHHHHhCCHHHHHHCCCCCHHHHHHHHHHH
Confidence 378899999999999997 8999999999986 6776654 456666665544
No 14
>d1szpa1 a.60.4.1 (A:81-144) DNA repair protein Rad51, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=95.72 E-value=0.0065 Score=45.45 Aligned_cols=52 Identities=29% Similarity=0.399 Sum_probs=41.2
Q ss_pred CCcccc--cCCCHHHHHHHHhhcCCCchHHHHhch-HHHHHH--cChhHHHHHHHhcc
Q 009298 139 LPIRKI--GGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAV--FSHSTADFFLSVGL 191 (538)
Q Consensus 139 lPl~~L--~GIG~kt~~kL~~~lGI~TlgDL~~lp-~~L~kr--FG~~~~~~L~~~a~ 191 (538)
+||+.| +|||+.+.++|.+ -|++|+.+|+..+ ..|.+. ||...++.+...++
T Consensus 1 ~pi~~L~~~Gig~~~~~kL~~-aG~~Tve~ia~~t~~~L~~i~Gi~e~~a~KIi~~A~ 57 (64)
T d1szpa1 1 VPIEKLQVNGITMADVKKLRE-SGLHTAEAVAYAPRKDLLEIKGISEAKADKLLNEAA 57 (64)
T ss_dssp CCGGGGCCTTCCHHHHHHHHT-TSCCSHHHHHHSCSHHHHTSTTCCHHHHHHHHHHHH
T ss_pred CCHHHHhHCCCCHHHHHHHHH-cCCCcHHHHHhCCHHHHHHcCCCCHHHHHHHHHHHH
Confidence 467777 6999999999998 8999999999987 777764 55666777655443
No 15
>d2fmpa2 a.60.12.1 (A:92-148) DNA polymerase beta {Human (Homo sapiens) [TaxId: 9606]}
Probab=94.93 E-value=0.0072 Score=44.13 Aligned_cols=30 Identities=27% Similarity=0.502 Sum_probs=26.4
Q ss_pred cccccCCCHHHHHHHHhhcCCCchHHHHhch
Q 009298 141 IRKIGGIGKVTEHILRDVFGINTCEEMLQKG 171 (538)
Q Consensus 141 l~~L~GIG~kt~~kL~~~lGI~TlgDL~~lp 171 (538)
+..|||||++++++|-+ .||+|+.||...+
T Consensus 9 l~~I~GvGp~~A~~l~~-~Gi~ti~dLr~~~ 38 (57)
T d2fmpa2 9 LTRVSGIGPSAARKFVD-EGIKTLEDLRKNE 38 (57)
T ss_dssp HTTSTTCCHHHHHHHHH-TTCCSHHHHHTCG
T ss_pred HhccccccHHHHHHHHH-hCCCCHHHHHhhh
Confidence 46789999999999997 8999999997643
No 16
>d2bcqa2 a.60.12.1 (A:329-385) DNA polymerase lambda {Human (Homo sapiens) [TaxId: 9606]}
Probab=94.72 E-value=0.0077 Score=43.94 Aligned_cols=29 Identities=21% Similarity=0.353 Sum_probs=25.8
Q ss_pred cccccCCCHHHHHHHHhhcCCCchHHHHhc
Q 009298 141 IRKIGGIGKVTEHILRDVFGINTCEEMLQK 170 (538)
Q Consensus 141 l~~L~GIG~kt~~kL~~~lGI~TlgDL~~l 170 (538)
++.|||||++++++|-+ .|++|+.||...
T Consensus 10 ft~I~GvGp~~A~~l~~-~Gi~ti~dLr~~ 38 (57)
T d2bcqa2 10 FSNIWGAGTKTAQMWYQ-QGFRSLEDIRSQ 38 (57)
T ss_dssp HHTSTTCCHHHHHHHHH-TTCCSHHHHHHH
T ss_pred HhccccccHHHHHHHHH-hCCCCHHHHHhc
Confidence 46789999999999997 899999999763
No 17
>d1kfta_ a.60.2.3 (A:) Excinuclease UvrC C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=94.38 E-value=0.013 Score=42.56 Aligned_cols=47 Identities=17% Similarity=0.293 Sum_probs=38.6
Q ss_pred cccccCCCHHHHHHHHhhcCCCchHHHHhch-HHHHHH--cChhHHHHHHHh
Q 009298 141 IRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAV--FSHSTADFFLSV 189 (538)
Q Consensus 141 l~~L~GIG~kt~~kL~~~lGI~TlgDL~~lp-~~L~kr--FG~~~~~~L~~~ 189 (538)
|..|||||++++++|.+.|| ++.++.+.+ ..|.+. +|+..++.+++.
T Consensus 4 L~~I~gVG~~~a~~L~~~F~--s~~~i~~As~eeL~~v~GIg~~~A~~I~~~ 53 (56)
T d1kfta_ 4 LETIEGVGPKRRQMLLKYMG--GLQGLRNASVEEIAKVPGISQGLAEKIFWS 53 (56)
T ss_dssp GGGCTTCSSSHHHHHHHHHS--CHHHHHHCCHHHHTTSSSTTSHHHHHHHHH
T ss_pred cccCCCccHHHHHHHHHHhC--CHHHHHHhhHHHHHhcCCCCHHHHHHHHHH
Confidence 67899999999999987555 999999887 788877 677777777654
No 18
>d2a1ja1 a.60.2.5 (A:837-898) DNA repair endonuclease XPF {Human (Homo sapiens) [TaxId: 9606]}
Probab=94.05 E-value=0.03 Score=41.20 Aligned_cols=49 Identities=12% Similarity=0.152 Sum_probs=40.7
Q ss_pred cccccCCCHHHHHHHHhhcCCCchHHHHhch-HHHHHHcC-hhHHHHHHHhcc
Q 009298 141 IRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFS-HSTADFFLSVGL 191 (538)
Q Consensus 141 l~~L~GIG~kt~~kL~~~lGI~TlgDL~~lp-~~L~krFG-~~~~~~L~~~a~ 191 (538)
|..|||||++..+.|.+ .+.++.+|.+.+ +.|.+.-| +..+..+|+..+
T Consensus 5 L~~iPGIg~~~~~~Ll~--~f~Si~~l~~As~~eL~~v~G~~~~A~~i~~f~~ 55 (62)
T d2a1ja1 5 LLKMPGVNAKNCRSLMH--HVKNIAELAALSQDELTSILGNAANAKQLYDFIH 55 (62)
T ss_dssp HHTSTTCCHHHHHHHHH--HCSSHHHHHTCCHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HhcCCCCCHHHHHHHHH--HhccHHHHHhCCHHHHHHCcCcHHHHHHHHHHHh
Confidence 56789999999999986 778999999998 88999887 556777776644
No 19
>d1jmsa3 a.60.12.1 (A:243-302) Terminal deoxynucleotidyl transferase {Mouse (Mus musculus) [TaxId: 10090]}
Probab=94.03 E-value=0.013 Score=43.10 Aligned_cols=29 Identities=17% Similarity=0.248 Sum_probs=25.7
Q ss_pred cccccCCCHHHHHHHHhhcCCCchHHHHhc
Q 009298 141 IRKIGGIGKVTEHILRDVFGINTCEEMLQK 170 (538)
Q Consensus 141 l~~L~GIG~kt~~kL~~~lGI~TlgDL~~l 170 (538)
+..|||||++++++|-+ .|++|+.||.+.
T Consensus 10 f~~I~GvGp~~A~~l~~-~Gi~ti~dL~~~ 38 (60)
T d1jmsa3 10 FTSVFGVGLKTAEKWFR-MGFRTLSKIQSD 38 (60)
T ss_dssp HHTSTTCCHHHHHHHHH-TTCCSHHHHHHC
T ss_pred HhccccccHHHHHHHHH-hCCCCHHHHHhc
Confidence 46789999999999987 899999999753
No 20
>d2p6ra2 a.289.1.2 (A:489-686) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=91.59 E-value=0.06 Score=48.90 Aligned_cols=47 Identities=21% Similarity=0.401 Sum_probs=36.9
Q ss_pred CCcccccCCCHHHHHHHHhhcCCCchHHHHhchHHHHHHcChhHHHHH
Q 009298 139 LPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFF 186 (538)
Q Consensus 139 lPl~~L~GIG~kt~~kL~~~lGI~TlgDL~~lp~~L~krFG~~~~~~L 186 (538)
+|+-.|||||++.+++|-+ .||+|+.||+..+..+....|+..+..+
T Consensus 144 l~L~~i~gvgr~rAr~L~~-~Gi~t~~dl~~a~~~~~~~~~~g~g~ki 190 (198)
T d2p6ra2 144 LELVRIRHIGRVRARKLYN-AGIRNAEDIVRHREKVASLIGRGIAERV 190 (198)
T ss_dssp HHHHTSTTCCHHHHHHHHT-TTCCSHHHHHHTHHHHHHHHCHHHHHHH
T ss_pred HhHhcCCCCCHHHHHHHHH-cCCCCHHHHHHccHhhHHHHhcchHHHH
Confidence 5788899999999999997 9999999999887444444555544444
No 21
>d1gm5a2 b.40.4.9 (A:106-285) RecG "wedge" domain {Thermotoga maritima [TaxId: 2336]}
Probab=91.32 E-value=0.033 Score=49.39 Aligned_cols=31 Identities=26% Similarity=0.458 Sum_probs=28.4
Q ss_pred CCcccccCCCHHHHHHHHhhcCCCchHHHHhc
Q 009298 139 LPIRKIGGIGKVTEHILRDVFGINTCEEMLQK 170 (538)
Q Consensus 139 lPl~~L~GIG~kt~~kL~~~lGI~TlgDL~~l 170 (538)
-||+.|.|||+++++.|++ +||.|++||+..
T Consensus 10 ~~i~~lkGvGpk~~~~L~k-lgI~ti~DLL~~ 40 (180)
T d1gm5a2 10 TDIQYAKGVGPNRKKKLKK-LGIETLRDLLEF 40 (180)
T ss_dssp CCSSSSSSCCHHHHHHHHT-TTCCSSGGGTSC
T ss_pred CChhhcCCcCHHHHHHHHH-hCCCcHHHHHHh
Confidence 5899999999999999997 999999999654
No 22
>d1doqa_ a.60.3.1 (A:) C-terminal domain of RNA polymerase alpha subunit {Thermus thermophilus [TaxId: 274]}
Probab=90.82 E-value=0.1 Score=39.27 Aligned_cols=48 Identities=19% Similarity=0.319 Sum_probs=38.9
Q ss_pred CCCcccccCCCHHHHHHHHhhcCCCchHHHHhch-HHHHH--HcChhHHHHHH
Q 009298 138 SLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCA--VFSHSTADFFL 187 (538)
Q Consensus 138 ~lPl~~L~GIG~kt~~kL~~~lGI~TlgDL~~lp-~~L~k--rFG~~~~~~L~ 187 (538)
..||.++ +++.++...|++ .||.|++||..++ ..|.+ -||.....-+.
T Consensus 7 ~~~I~~L-~LS~R~~N~L~~-~gI~tv~dL~~~s~~dLl~i~n~G~ksl~EI~ 57 (69)
T d1doqa_ 7 DLPLEEL-GLSTRVLHSLKE-EGIESVRALLALNLKDLKNIPGIGERSLEEIK 57 (69)
T ss_dssp CCCHHHH-TCCHHHHHHHHH-TTCCSHHHHHHSCHHHHTTSTTCCHHHHHHHH
T ss_pred CCcHHHc-CCCHHHHHHHHH-cCCccHHHHHHCCHHHHHhCCCCCHHHHHHHH
Confidence 5689898 899999999998 9999999999998 55553 57877655553
No 23
>d1b22a_ a.60.4.1 (A:) DNA repair protein Rad51, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=90.57 E-value=0.051 Score=41.11 Aligned_cols=53 Identities=25% Similarity=0.327 Sum_probs=41.9
Q ss_pred cCCCcccc--cCCCHHHHHHHHhhcCCCchHHHHhch-HHHHHH--cChhHHHHHHHhc
Q 009298 137 SSLPIRKI--GGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAV--FSHSTADFFLSVG 190 (538)
Q Consensus 137 ~~lPl~~L--~GIG~kt~~kL~~~lGI~TlgDL~~lp-~~L~kr--FG~~~~~~L~~~a 190 (538)
.++||..| +|||+.+.++|.. .|++|+.+|+..+ ..|.+. ||...++.+...+
T Consensus 6 gp~~i~~L~~~Gig~~~i~kL~~-aG~~Tv~~i~~at~~~L~~i~G~~e~~A~KIi~~a 63 (70)
T d1b22a_ 6 GPQPISRLEQCGINANDVKKLEE-AGFHTVEAVAYAPKKELINIKGISEAKADKILAEA 63 (70)
T ss_dssp SCCCHHHHHHTTCSHHHHHHHHT-TCCSSGGGBTSSBHHHHHTTTTCSTTHHHHHHHHH
T ss_pred CCccHHHHhhCCCCHHHHHHHHH-cCcchHHHHHhCCHHHHHHcCCCCHHHHHHHHHHH
Confidence 56788876 6999999999998 8999999999987 667654 5566677665543
No 24
>d2bgwa1 a.60.2.5 (A:160-229) DNA repair endonuclease XPF {Aeropyrum pernix [TaxId: 56636]}
Probab=90.02 E-value=0.15 Score=38.17 Aligned_cols=47 Identities=19% Similarity=0.384 Sum_probs=36.9
Q ss_pred cccccCCCHHHHHHHHhhcCCCchHHHHhch-HHHHHH--cChhHHHHHHHh
Q 009298 141 IRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAV--FSHSTADFFLSV 189 (538)
Q Consensus 141 l~~L~GIG~kt~~kL~~~lGI~TlgDL~~lp-~~L~kr--FG~~~~~~L~~~ 189 (538)
+..|||||++++++|.+.+| ++.+|.+.+ ..|.+. +|...+..++++
T Consensus 15 L~~IpgIG~~~a~~L~~~F~--s~~~l~~As~eeL~~v~GIG~~~A~~I~~~ 64 (70)
T d2bgwa1 15 LQSFPGIGRRTAERILERFG--SLERFFTASKAEISKVEGIGEKRAEEIKKI 64 (70)
T ss_dssp HHTSTTCCHHHHHHHHHHHS--SHHHHTTCCHHHHHHSTTCCHHHHHHHHHH
T ss_pred HcCCCCcCHHHHHHHHHHhC--CHHHHHHcCHHHHHcCCCCCHHHHHHHHHH
Confidence 67899999999999987555 888988876 777775 677777777654
No 25
>d1x2ia1 a.60.2.5 (A:2-69) ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Probab=89.19 E-value=0.17 Score=37.63 Aligned_cols=48 Identities=15% Similarity=0.149 Sum_probs=38.4
Q ss_pred cccccCCCHHHHHHHHhhcCCCchHHHHhch-HHHHHH--cChhHHHHHHHhc
Q 009298 141 IRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAV--FSHSTADFFLSVG 190 (538)
Q Consensus 141 l~~L~GIG~kt~~kL~~~lGI~TlgDL~~lp-~~L~kr--FG~~~~~~L~~~a 190 (538)
|..|||||++++++|.+.+ .|+.++.+.+ ..|.+. +|...++.++++.
T Consensus 12 L~~I~gIG~~~a~~L~~~f--~s~~~i~~As~eeL~~i~GIG~~~A~~I~~~~ 62 (68)
T d1x2ia1 12 VEGLPHVSATLARRLLKHF--GSVERVFTASVAELMKVEGIGEKIAKEIRRVI 62 (68)
T ss_dssp HTTSTTCCHHHHHHHHHHH--CSHHHHHHCCHHHHTTSTTCCHHHHHHHHHHH
T ss_pred HcCCCCcCHHHHHHHHHHc--CCHHHHHHhHHHHHHhCCCcCHHHHHHHHHHH
Confidence 5679999999999998744 5899998877 777776 7788788777654
No 26
>d1z3eb1 a.60.3.1 (B:245-311) C-terminal domain of RNA polymerase alpha subunit {Bacillus subtilis [TaxId: 1423]}
Probab=87.58 E-value=0.39 Score=35.65 Aligned_cols=49 Identities=16% Similarity=0.234 Sum_probs=39.9
Q ss_pred cCCCcccccCCCHHHHHHHHhhcCCCchHHHHhch-HHHH--HHcChhHHHHHH
Q 009298 137 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLC--AVFSHSTADFFL 187 (538)
Q Consensus 137 ~~lPl~~L~GIG~kt~~kL~~~lGI~TlgDL~~lp-~~L~--krFG~~~~~~L~ 187 (538)
-..||.++ +++..+..-|++ .||.|++||..++ ..|. +-||.....-+.
T Consensus 5 L~~~I~~L-~LS~R~~N~Lk~-~~I~tv~dL~~~s~~dLl~~~nfG~kSl~EIk 56 (67)
T d1z3eb1 5 LEMTIEEL-DLSVRSYNCLKR-AGINTVQELANKTEEDMMKVRNLGRKSLEEVK 56 (67)
T ss_dssp HTCBGGGS-CCBHHHHHHHHH-TTCCBHHHHHTSCHHHHHTSTTCCHHHHHHHH
T ss_pred hcCCHHHh-cCCHHHHHHHHH-cCCcCHHHHHHCCHHHHHhCCCCchhhHHHHH
Confidence 34799998 899999999997 9999999999997 5555 468877665553
No 27
>d1lb2b_ a.60.3.1 (B:) C-terminal domain of RNA polymerase alpha subunit {Escherichia coli [TaxId: 562]}
Probab=87.23 E-value=0.49 Score=35.62 Aligned_cols=48 Identities=10% Similarity=0.132 Sum_probs=38.3
Q ss_pred CCCcccccCCCHHHHHHHHhhcCCCchHHHHhch-HHHHH--HcChhHHHHHH
Q 009298 138 SLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCA--VFSHSTADFFL 187 (538)
Q Consensus 138 ~lPl~~L~GIG~kt~~kL~~~lGI~TlgDL~~lp-~~L~k--rFG~~~~~~L~ 187 (538)
..||.++ +++.++...|++ .||.|++||..+. ..|.+ -||....+-+.
T Consensus 5 ~k~I~~L-~lS~R~~N~L~~-~gI~tvgdL~~~s~~dLl~~~n~G~KSl~EI~ 55 (72)
T d1lb2b_ 5 LRPVDDL-ELTVRSANCLKA-EAIHYIGDLVQRTEVELLKTPNLGKKSLTEIK 55 (72)
T ss_dssp TSBGGGG-CCCHHHHHHHHH-TTCCBHHHHHTCCHHHHHHSTTCCHHHHHHHH
T ss_pred cCcHHHh-CCCHHHHHHHhH-cCCcCHHHHHhCCHHHHHhCCCCcHhHHHHHH
Confidence 3588888 799999999998 9999999999997 55554 68876655443
No 28
>d2a1jb1 a.60.2.5 (B:219-296) DNA excision repair protein ERCC-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=83.92 E-value=0.5 Score=35.87 Aligned_cols=48 Identities=15% Similarity=0.252 Sum_probs=38.4
Q ss_pred cccccCCCHHHHHHHHhhcCCCchHHHHhch-HHHHHH--cChhHHHHHHHhc
Q 009298 141 IRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAV--FSHSTADFFLSVG 190 (538)
Q Consensus 141 l~~L~GIG~kt~~kL~~~lGI~TlgDL~~lp-~~L~kr--FG~~~~~~L~~~a 190 (538)
|+.|+|||++++..|.+.+ .|+.+|.+.. ..|... +|...+..++++.
T Consensus 21 L~~I~gIg~~~a~~L~~~F--~s~~~i~~A~~eeL~~i~GiG~~~A~~i~~~f 71 (78)
T d2a1jb1 21 LTTVKSVNKTDSQTLLTTF--GSLEQLIAASREDLALCPGLGPQKARRLFDVL 71 (78)
T ss_dssp HTTSTTCCHHHHHHHHHHH--SSHHHHHSCCHHHHHTSSSCCSHHHHHHHHHH
T ss_pred hcCCCCcCHHHHHHHHHHh--CCcHHHHhhhHHHHHHhhhhhHHHHHHHHHHH
Confidence 4578999999999998744 4899998876 788887 7887777776653
No 29
>d1ci4a_ a.60.5.1 (A:) Barrier-to-autointegration factor, BAF {Human (Homo sapiens) [TaxId: 9606]}
Probab=79.96 E-value=0.55 Score=36.45 Aligned_cols=32 Identities=22% Similarity=0.416 Sum_probs=26.7
Q ss_pred hhcCCCcccccCCCHHHHHHHHhhcCCCchHHH
Q 009298 135 FISSLPIRKIGGIGKVTEHILRDVFGINTCEEM 167 (538)
Q Consensus 135 fL~~lPl~~L~GIG~kt~~kL~~~lGI~TlgDL 167 (538)
-+..-||++|||||+.+.++|.+ -|+.....+
T Consensus 14 PMG~K~V~~l~GIG~~lg~~L~~-kGfdKAy~v 45 (89)
T d1ci4a_ 14 PMGEKPVGSLAGIGEVLGKKLEE-RGFDKAYVV 45 (89)
T ss_dssp CCTTCCGGGSTTCCHHHHHHHHH-TTCCSHHHH
T ss_pred CCCCCcccccCCccHHHHHHHHH-cCccHHHHH
Confidence 34567999999999999999997 899875554
No 30
>d2q0zx1 a.289.1.1 (X:33-208) Protein pro2281 {Human (Homo sapiens) [TaxId: 9606]}
Probab=75.49 E-value=1.8 Score=37.39 Aligned_cols=49 Identities=8% Similarity=0.042 Sum_probs=38.3
Q ss_pred CCcccccCCCHHHHHHHHhhcCCCchHHHHhch-HHHHHHcC--hhHHHHHHH
Q 009298 139 LPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFS--HSTADFFLS 188 (538)
Q Consensus 139 lPl~~L~GIG~kt~~kL~~~lGI~TlgDL~~lp-~~L~krFG--~~~~~~L~~ 188 (538)
-|+..||++|+.+..+|.+ .|+.|+.||.+++ ..+....| ...+..+..
T Consensus 119 ~~L~Qlp~~~~~~~~kl~~-~~i~sl~~l~~~~~~e~~~ll~~~~~~~~~i~~ 170 (176)
T d2q0zx1 119 SYLKQLPHFTSEHIKRCTD-KGVESVFDIMEMEDEERNALLQLTDSQIADVAR 170 (176)
T ss_dssp CGGGGSTTCCHHHHHHHHH-TTCCSHHHHHHSCHHHHHHHHCCCHHHHHHHHH
T ss_pred CCccCCCcCCHHHHHHHHH-CCCCCHHHHHhCCHHHHHHHHcCCHHHHHHHHH
Confidence 4789999999999999997 8999999999997 56555554 444444433
No 31
>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=74.62 E-value=0.22 Score=30.13 Aligned_cols=24 Identities=38% Similarity=1.023 Sum_probs=20.3
Q ss_pred ccccccccCCCCCcHhhhhccccchH
Q 009298 451 YKCSLCGTEMPPSFIEERQEHSDFHL 476 (538)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (538)
|.|.+||...--| .||..|.++||
T Consensus 4 f~C~~CgrkFArs--derkRH~kiH~ 27 (28)
T d1a1ia3 4 FACDICGRKFARS--DERKRHTKIHL 27 (28)
T ss_dssp EECTTTCCEESSH--HHHHHHHGGGC
T ss_pred cccchhhhhhhcc--hhhhhhhhhcc
Confidence 6899999987654 78999999997
No 32
>d1bvsa2 a.60.2.1 (A:64-134) DNA helicase RuvA subunit, middle domain {Mycobacterium leprae [TaxId: 1769]}
Probab=60.08 E-value=1.3 Score=33.12 Aligned_cols=43 Identities=19% Similarity=0.322 Sum_probs=26.9
Q ss_pred EecCChhHHHHHhcccCCCCeEEecCChHHHHHhhcCCC---cccccCCCHHHHHHHH
Q 009298 102 GVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLP---IRKIGGIGKVTEHILR 156 (538)
Q Consensus 102 GIA~nk~lAKLAS~~aKP~G~~vl~~~~~~~~~fL~~lP---l~~L~GIG~kt~~kL~ 156 (538)
|||+-..+|-|.+.- + +++...+..-. +..+||||++|++++-
T Consensus 16 GIGpK~Al~iLs~~~----------~--~~l~~aI~~~D~~~L~~vpGIG~KtA~rIi 61 (71)
T d1bvsa2 16 GVGPRLAMATLAVHD----------A--AALRQALADSDVASLTRVPGIGRRGAERIV 61 (71)
T ss_dssp SCCHHHHHHHHHHSC----------H--HHHHHHTTTTCHHHHHTSTTCCHHHHHHHH
T ss_pred CcCHHHHHHHHHhCC----------H--HHHHHHHHcCCHHHhhcCCCCCHHHHHHHH
Confidence 788766666554421 1 13444444432 6678999999998874
No 33
>d2axtu1 a.60.12.2 (U:37-134) Photosystem II 12 kDa extrinsic protein PsbU {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=43.24 E-value=5.8 Score=31.17 Aligned_cols=30 Identities=10% Similarity=0.164 Sum_probs=24.9
Q ss_pred cccccCCCHHHHHHHHhhcC-CCchHHHHhch
Q 009298 141 IRKIGGIGKVTEHILRDVFG-INTCEEMLQKG 171 (538)
Q Consensus 141 l~~L~GIG~kt~~kL~~~lG-I~TlgDL~~lp 171 (538)
+..|||||+++++++-+ .| ..++.||.+.+
T Consensus 29 L~~lpGIg~~~A~~Iv~-~gpf~s~edL~~V~ 59 (98)
T d2axtu1 29 FIQYRGLYPTLAKLIVK-NAPYESVEDVLNIP 59 (98)
T ss_dssp GTTSTTCTHHHHHHHHH-SCCCSSGGGGGGCT
T ss_pred HHHhhhhcHHHHHHHHH-cCCcCCHHHHhhCC
Confidence 57789999999999986 76 67888887764
No 34
>d1ixra1 a.60.2.1 (A:63-135) DNA helicase RuvA subunit, middle domain {Thermus thermophilus [TaxId: 274]}
Probab=41.19 E-value=4.8 Score=29.93 Aligned_cols=43 Identities=16% Similarity=0.185 Sum_probs=27.1
Q ss_pred EecCChhHHHHHhcccCCCCeEEecCChHHHHHhhcCC---CcccccCCCHHHHHHHH
Q 009298 102 GVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSL---PIRKIGGIGKVTEHILR 156 (538)
Q Consensus 102 GIA~nk~lAKLAS~~aKP~G~~vl~~~~~~~~~fL~~l---Pl~~L~GIG~kt~~kL~ 156 (538)
|||+...+|-|.+.- + +++...+..- -+..+||||++|++++-
T Consensus 17 GIGpk~Al~iLs~~~----------~--~~l~~aI~~~D~~~L~~vpGIG~KtA~rIi 62 (73)
T d1ixra1 17 GVGPKVALALLSALP----------P--RLLARALLEGDARLLTSASGVGRRLAERIA 62 (73)
T ss_dssp CCCHHHHHHHHHHSC----------H--HHHHHHHHTTCHHHHTTSTTCCHHHHHHHH
T ss_pred CcCHHHHHHHHHHcc----------H--HHHHHHHHhcCHHHhhcCCCCCHHHHHHHH
Confidence 788877777664421 1 1333333332 36788999999999874
No 35
>d1vqou1 g.39.1.6 (U:4-56) Ribosomal protein L24e {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=40.91 E-value=4.2 Score=28.40 Aligned_cols=12 Identities=42% Similarity=1.290 Sum_probs=11.4
Q ss_pred cccccccCCCCC
Q 009298 452 KCSLCGTEMPPS 463 (538)
Q Consensus 452 ~~~~~~~~~~~~ 463 (538)
+||.||.+++|+
T Consensus 2 ~CsF~g~~I~PG 13 (53)
T d1vqou1 2 ECDYCGTDIEPG 13 (53)
T ss_dssp BCTTTCCBCCTT
T ss_pred cccccCCeecCC
Confidence 799999999998
No 36
>d1dfxa2 g.41.5.2 (A:1-36) Desulfoferrodoxin N-terminal domain {Desulfovibrio desulfuricans [TaxId: 876]}
Probab=38.57 E-value=3.3 Score=26.51 Aligned_cols=11 Identities=45% Similarity=1.144 Sum_probs=8.9
Q ss_pred cCccccccccC
Q 009298 449 DDYKCSLCGTE 459 (538)
Q Consensus 449 ~~~~~~~~~~~ 459 (538)
.-|||.+||-.
T Consensus 5 evYkC~~CGNi 15 (36)
T d1dfxa2 5 EVYKCTHCGNI 15 (36)
T ss_dssp CEEECTTTCCE
T ss_pred cEEEecccCcE
Confidence 45999999953
No 37
>d1cuka2 a.60.2.1 (A:65-142) DNA helicase RuvA subunit, middle domain {Escherichia coli [TaxId: 562]}
Probab=37.90 E-value=5.1 Score=30.16 Aligned_cols=43 Identities=28% Similarity=0.334 Sum_probs=26.9
Q ss_pred EecCChhHHHHHhcccCCCCeEEecCChHHHHHhhcCC---CcccccCCCHHHHHHHH
Q 009298 102 GVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSL---PIRKIGGIGKVTEHILR 156 (538)
Q Consensus 102 GIA~nk~lAKLAS~~aKP~G~~vl~~~~~~~~~fL~~l---Pl~~L~GIG~kt~~kL~ 156 (538)
|||+-..+|-|.+.- | +++...+..- -|..+||||++|++++-
T Consensus 16 GIGpK~Al~iLs~~~--~----------~~l~~aI~~~D~~~L~~vpGIG~KtA~rIi 61 (78)
T d1cuka2 16 GVGPKLALAILSGMS--A----------QQFVNAVEREEVGALVKLPGIGKKTAERLI 61 (78)
T ss_dssp SCCHHHHHHHHHHSC--H----------HHHHHHHHTTCHHHHHTSTTCCHHHHHHHH
T ss_pred CccHHHHHHHHHhCC--H----------HHHHHHHHccCHHHhhcCCCCCHHHHHHHH
Confidence 788877777664421 1 1233333332 25678999999999984
No 38
>d1dxga_ g.41.5.2 (A:) Desulforedoxin {Desulfovibrio gigas [TaxId: 879]}
Probab=37.81 E-value=3.4 Score=26.39 Aligned_cols=11 Identities=64% Similarity=1.352 Sum_probs=8.7
Q ss_pred cCccccccccC
Q 009298 449 DDYKCSLCGTE 459 (538)
Q Consensus 449 ~~~~~~~~~~~ 459 (538)
.-|||.+||-.
T Consensus 5 evYkC~~CGNi 15 (36)
T d1dxga_ 5 DVYKCELCGQV 15 (36)
T ss_dssp CEEECTTTCCE
T ss_pred cEEEeccCCcE
Confidence 35999999953
No 39
>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}
Probab=37.73 E-value=3.7 Score=24.46 Aligned_cols=11 Identities=45% Similarity=1.111 Sum_probs=8.8
Q ss_pred CccccccccCC
Q 009298 450 DYKCSLCGTEM 460 (538)
Q Consensus 450 ~~~~~~~~~~~ 460 (538)
-|+|..||.-.
T Consensus 2 Py~C~eCgK~F 12 (26)
T d1x6ea2 2 PYKCLECGKAF 12 (26)
T ss_dssp CEECSSSCCEE
T ss_pred CccCCCCcCee
Confidence 38999999753
No 40
>d1vzia2 g.41.5.2 (A:1-37) Desulfoferrodoxin N-terminal domain {Desulfoarculus baarsii (Desulfovibrio baarsii) [TaxId: 887]}
Probab=37.50 E-value=3.5 Score=26.54 Aligned_cols=11 Identities=45% Similarity=1.162 Sum_probs=8.8
Q ss_pred cCccccccccC
Q 009298 449 DDYKCSLCGTE 459 (538)
Q Consensus 449 ~~~~~~~~~~~ 459 (538)
.-|||.+||-.
T Consensus 5 evYkC~~CGNi 15 (37)
T d1vzia2 5 QVYKCEVCGNI 15 (37)
T ss_dssp CEEECTTTCCE
T ss_pred cEEEecccCcE
Confidence 45999999953
No 41
>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=34.32 E-value=4.4 Score=24.43 Aligned_cols=11 Identities=18% Similarity=0.917 Sum_probs=8.7
Q ss_pred CccccccccCC
Q 009298 450 DYKCSLCGTEM 460 (538)
Q Consensus 450 ~~~~~~~~~~~ 460 (538)
-|+|+.||.-.
T Consensus 3 Py~C~~C~k~F 13 (28)
T d1a1ia2 3 PFQCRICMRNF 13 (28)
T ss_dssp CEECTTTCCEE
T ss_pred CccCCCCcCEe
Confidence 38999999753
No 42
>d1dgsa1 a.60.2.2 (A:401-581) NAD+-dependent DNA ligase, domain 3 {Thermus filiformis [TaxId: 276]}
Probab=34.24 E-value=14 Score=31.89 Aligned_cols=44 Identities=16% Similarity=0.225 Sum_probs=33.9
Q ss_pred CcccccCCCHHHHHHHHhhcC-CCchHHHHhch-HHHHH--HcChhHHH
Q 009298 140 PIRKIGGIGKVTEHILRDVFG-INTCEEMLQKG-SLLCA--VFSHSTAD 184 (538)
Q Consensus 140 Pl~~L~GIG~kt~~kL~~~lG-I~TlgDL~~lp-~~L~k--rFG~~~~~ 184 (538)
..-+|-|+|+++.+.|-+ .| |.++.||..+. ..|.. +||...+.
T Consensus 42 ~amdI~GlG~~~i~~L~~-~g~i~~~~Dly~L~~~~l~~l~~~g~ksa~ 89 (181)
T d1dgsa1 42 KAMDIEGLGEKLIERLLE-KGLVRDVADLYHLRKEDLLGLERMGEKSAQ 89 (181)
T ss_dssp TSSCCTTCCHHHHHHHHH-TTSCSSGGGGGGGCCHHHHTTSSCCSTTHH
T ss_pred HHHHHHHHHHHHHHHHhh-cCCcchhhhhhhhhhHHHhcccccchHHHH
Confidence 445668999999999997 89 59999999886 55554 57865444
No 43
>d1kbea_ g.49.1.1 (A:) Kinase suppressor of Ras, Ksr {Mouse (Mus musculus) [TaxId: 10090]}
Probab=32.18 E-value=4.7 Score=27.51 Aligned_cols=14 Identities=21% Similarity=0.382 Sum_probs=11.4
Q ss_pred cceeecCcccccccc
Q 009298 444 QFIWLDDYKCSLCGT 458 (538)
Q Consensus 444 ~~~~~~~~~~~~~~~ 458 (538)
.++| .||+|..|++
T Consensus 22 ~~l~-qg~~C~~C~~ 35 (49)
T d1kbea_ 22 KSMI-FGVKCKHCRL 35 (49)
T ss_dssp CSSC-CEEEETTTTE
T ss_pred hhhh-CcCCcCCCCC
Confidence 3557 7999999986
No 44
>d1faqa_ g.49.1.1 (A:) RAF-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=31.57 E-value=5.7 Score=27.17 Aligned_cols=15 Identities=27% Similarity=1.077 Sum_probs=12.1
Q ss_pred cceeecCccccccccC
Q 009298 444 QFIWLDDYKCSLCGTE 459 (538)
Q Consensus 444 ~~~~~~~~~~~~~~~~ 459 (538)
.++| .||+|+.||.-
T Consensus 22 ~~i~-~g~~C~~C~~~ 36 (52)
T d1faqa_ 22 KFLL-NGFRCQTCGYK 36 (52)
T ss_dssp SEEC-SEEECTTTTCC
T ss_pred Cccc-cCCCcCCCCCh
Confidence 3567 79999999974
No 45
>d1rxwa1 a.60.7.1 (A:220-324) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=30.19 E-value=14 Score=28.81 Aligned_cols=25 Identities=16% Similarity=0.258 Sum_probs=19.1
Q ss_pred cccCCCHHHHHHHHhhcCCCchHHHHh
Q 009298 143 KIGGIGKVTEHILRDVFGINTCEEMLQ 169 (538)
Q Consensus 143 ~L~GIG~kt~~kL~~~lGI~TlgDL~~ 169 (538)
-+||||++|+-+|-+.+| |+..+.+
T Consensus 20 GV~GIG~ktA~kli~~~g--sle~i~~ 44 (105)
T d1rxwa1 20 GVKGVGVKKALNYIKTYG--DIFRALK 44 (105)
T ss_dssp CCTTCCHHHHHHHHHHHS--SHHHHHH
T ss_pred CCCCcCHHHHHHHHHHhC--CHHHHHH
Confidence 578999999888766576 6776654
No 46
>d1xo1a1 a.60.7.1 (A:186-290) T5 5'-exonuclease {Bacteriophage T5 [TaxId: 10726]}
Probab=30.17 E-value=14 Score=28.88 Aligned_cols=27 Identities=26% Similarity=0.463 Sum_probs=19.3
Q ss_pred cccccCCCHHHHHHHHhhcCCCchHHHHh
Q 009298 141 IRKIGGIGKVTEHILRDVFGINTCEEMLQ 169 (538)
Q Consensus 141 l~~L~GIG~kt~~kL~~~lGI~TlgDL~~ 169 (538)
|-=+||||++|+.+|-..+| |+.++.+
T Consensus 21 ipGV~GiG~KtA~kli~~~g--sle~i~~ 47 (105)
T d1xo1a1 21 IRGVEGIGAKRGYNIIREFG--NVLDIID 47 (105)
T ss_dssp BCCCTTCCHHHHHHHHHHHC--SHHHHHH
T ss_pred CcCcCCcCHHHHHHHHHHcc--hhHHHHH
Confidence 45568999999988766465 6666644
No 47
>d2cora1 g.39.1.3 (A:43-73) Pinch (particularly interesting new Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=29.74 E-value=6.1 Score=24.00 Aligned_cols=18 Identities=33% Similarity=0.676 Sum_probs=13.5
Q ss_pred ccccccCCCCCcHhhhhc
Q 009298 453 CSLCGTEMPPSFIEERQE 470 (538)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~ 470 (538)
|.-||.||+..--|.|-|
T Consensus 2 C~~CgkeltadArEl~ge 19 (31)
T d2cora1 2 CANCGKELTADARELKGE 19 (31)
T ss_dssp CSSSCCBCCTTCEEETTE
T ss_pred ccccccccchhHHHhcCC
Confidence 899999999766555443
No 48
>d1vdda_ e.49.1.1 (A:) Recombination protein RecR {Deinococcus radiodurans [TaxId: 1299]}
Probab=29.28 E-value=8.1 Score=34.20 Aligned_cols=16 Identities=25% Similarity=0.524 Sum_probs=14.7
Q ss_pred cccccCCCHHHHHHHH
Q 009298 141 IRKIGGIGKVTEHILR 156 (538)
Q Consensus 141 l~~L~GIG~kt~~kL~ 156 (538)
+++|||||+++++++.
T Consensus 14 l~kLPGIG~KsA~Rla 29 (199)
T d1vdda_ 14 LSRLPGIGPKSAQRLA 29 (199)
T ss_dssp HHTSTTCCHHHHHHHH
T ss_pred HHHCCCCCHHHHHHHH
Confidence 6889999999999996
No 49
>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=26.37 E-value=6.7 Score=22.43 Aligned_cols=9 Identities=56% Similarity=1.250 Sum_probs=7.3
Q ss_pred Ccccccccc
Q 009298 450 DYKCSLCGT 458 (538)
Q Consensus 450 ~~~~~~~~~ 458 (538)
-||||-|..
T Consensus 2 pykcsscsq 10 (26)
T d2dlqa1 2 PYKCSSCSQ 10 (26)
T ss_dssp SEECSSSCC
T ss_pred CCcccHHHH
Confidence 499999974
No 50
>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.07 E-value=7.5 Score=24.59 Aligned_cols=11 Identities=36% Similarity=0.960 Sum_probs=9.1
Q ss_pred CccccccccCC
Q 009298 450 DYKCSLCGTEM 460 (538)
Q Consensus 450 ~~~~~~~~~~~ 460 (538)
-|+|..||.-.
T Consensus 8 Py~C~~C~k~F 18 (36)
T d1x6ha2 8 PYACSHCDKTF 18 (36)
T ss_dssp CEECSSSSCEE
T ss_pred CEECCCCCCCc
Confidence 49999999754
No 51
>d1dgsa1 a.60.2.2 (A:401-581) NAD+-dependent DNA ligase, domain 3 {Thermus filiformis [TaxId: 276]}
Probab=25.84 E-value=35 Score=29.16 Aligned_cols=50 Identities=22% Similarity=0.315 Sum_probs=28.7
Q ss_pred HHHhhcCCCcccccCCCHHHHHHHHhhcCCCchHHHHhch-HHHHHH--cChhHHHHH
Q 009298 132 VMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAV--FSHSTADFF 186 (538)
Q Consensus 132 ~~~fL~~lPl~~L~GIG~kt~~kL~~~lGI~TlgDL~~lp-~~L~kr--FG~~~~~~L 186 (538)
...||..+- ||+||.++++.|.+ -..++.+|.+.. ..|.+. +|+..+.-+
T Consensus 103 l~r~l~aLG---I~~vG~~~Ak~La~--~f~sl~~l~~as~eeL~~I~GIG~~~A~si 155 (181)
T d1dgsa1 103 LERLLYALG---LPGVGEVLARNLAR--RFGTMDRLLEASLEELIEVEEVGELTARAI 155 (181)
T ss_dssp HHHHHHHTT---CSSCCHHHHHHHHH--TTSBHHHHTTCCHHHHHTSTTCCHHHHHHH
T ss_pred HHHHHHHHH---hhhhhHHHHHHHHH--HhhhhhhhhhhHHHHHhhcCCcCHHHHHHH
Confidence 445666654 36778888887775 355666666654 444443 344433333
No 52
>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}
Probab=25.42 E-value=8.7 Score=23.15 Aligned_cols=11 Identities=18% Similarity=0.884 Sum_probs=9.0
Q ss_pred CccccccccCC
Q 009298 450 DYKCSLCGTEM 460 (538)
Q Consensus 450 ~~~~~~~~~~~ 460 (538)
-|+|..||...
T Consensus 2 p~~C~~C~k~F 12 (29)
T d2adra1 2 SFVCEVCTRAF 12 (29)
T ss_dssp CBCCTTTCCCB
T ss_pred cCCCCCCCCCC
Confidence 38999999864
No 53
>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.03 E-value=9.3 Score=24.37 Aligned_cols=11 Identities=45% Similarity=1.207 Sum_probs=9.1
Q ss_pred CccccccccCC
Q 009298 450 DYKCSLCGTEM 460 (538)
Q Consensus 450 ~~~~~~~~~~~ 460 (538)
-|+|..||.-.
T Consensus 12 py~C~~CgK~F 22 (38)
T d2cota2 12 RYKCDECGKSF 22 (38)
T ss_dssp SSBCSSSCCBC
T ss_pred CEecCCCCcee
Confidence 49999999754
No 54
>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}
Probab=24.92 E-value=8.8 Score=21.91 Aligned_cols=13 Identities=62% Similarity=1.377 Sum_probs=10.2
Q ss_pred ccccccccCCCCCcHhh
Q 009298 451 YKCSLCGTEMPPSFIEE 467 (538)
Q Consensus 451 ~~~~~~~~~~~~~~~~~ 467 (538)
|||-||. -||+|.
T Consensus 1 ykcglce----rsfvek 13 (26)
T d1znfa_ 1 YKCGLCE----RSFVEK 13 (26)
T ss_dssp CBCSSSC----CBCSSH
T ss_pred CcccchH----HHHHHH
Confidence 8999996 478764
No 55
>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.29 E-value=9.5 Score=23.02 Aligned_cols=11 Identities=18% Similarity=0.797 Sum_probs=9.0
Q ss_pred CccccccccCC
Q 009298 450 DYKCSLCGTEM 460 (538)
Q Consensus 450 ~~~~~~~~~~~ 460 (538)
-|+|..||...
T Consensus 2 py~C~~C~k~F 12 (29)
T d1sp1a_ 2 KFACPECPKRF 12 (29)
T ss_dssp CSCCTTTTCCC
T ss_pred CEECCcCCCee
Confidence 38999999864
No 56
>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=23.95 E-value=94 Score=27.81 Aligned_cols=68 Identities=13% Similarity=0.061 Sum_probs=43.6
Q ss_pred cCHHHHHcCCCCCCcH------------HHHHhhCCC--eEEEcCChHHHHHHHHHHHHHHHhcCCCeE-----------
Q 009298 4 ELLSARRFGVRAAMPG------------FIARKLCPE--LIFVPTDFTKYTYYSDLTRKVFCKYDPNFM----------- 58 (538)
Q Consensus 4 ~syeAR~~GVr~GM~l------------~~A~~LCP~--Lvvvp~d~~~Y~~~s~~l~~il~~~sp~Ve----------- 58 (538)
+++....++|++||.+ .-|+...|+ +..+..+.+..+.+.+.+..........+.
T Consensus 85 ~s~Ii~~l~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~~~ 164 (264)
T d1i9ga_ 85 AAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSEL 164 (264)
T ss_dssp HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCC
T ss_pred HHHHHHHhCCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEecccccccc
Confidence 3567778899998874 556777887 455667777777766666555433333222
Q ss_pred -eeCccEEEEEcCc
Q 009298 59 -AASLDEAYLDITE 71 (538)
Q Consensus 59 -~~SiDEafLDlT~ 71 (538)
-.++|-+|||+..
T Consensus 165 ~~~~fDaV~ldlp~ 178 (264)
T d1i9ga_ 165 PDGSVDRAVLDMLA 178 (264)
T ss_dssp CTTCEEEEEEESSC
T ss_pred cCCCcceEEEecCC
Confidence 2456778888754
No 57
>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=23.80 E-value=6.3 Score=25.40 Aligned_cols=14 Identities=36% Similarity=0.954 Sum_probs=11.6
Q ss_pred CccccccccCCCCC
Q 009298 450 DYKCSLCGTEMPPS 463 (538)
Q Consensus 450 ~~~~~~~~~~~~~~ 463 (538)
.|+|..|+.+.|.+
T Consensus 5 ~~~C~~C~k~F~s~ 18 (37)
T d1njqa_ 5 SYTCSFCKREFRSA 18 (37)
T ss_dssp SEECTTTCCEESSH
T ss_pred ccCCCCCCCccCCc
Confidence 59999999988753
No 58
>d3bzka1 a.60.2.6 (A:474-563) Transcriptional accessory factor Tex {Pseudomonas aeruginosa [TaxId: 287]}
Probab=23.45 E-value=15 Score=28.02 Aligned_cols=30 Identities=13% Similarity=0.290 Sum_probs=22.4
Q ss_pred cccccCCCHHHHHHHHhhc-----CCCchHHHHhch
Q 009298 141 IRKIGGIGKVTEHILRDVF-----GINTCEEMLQKG 171 (538)
Q Consensus 141 l~~L~GIG~kt~~kL~~~l-----GI~TlgDL~~lp 171 (538)
+..+||||+++++++-+ + ++.++.||...+
T Consensus 37 L~~lpGig~~~A~~Iv~-~R~~~G~f~s~edL~~v~ 71 (90)
T d3bzka1 37 LARISGLNSTLAQNIVA-HRDANGAFRTRDELKKVS 71 (90)
T ss_dssp HTTSTTCCHHHHHHHHH-HHHHHCSCSSSGGGGGST
T ss_pred HhHCCCCCHHHHHHHHH-HHHHcCCCCCHHHHhhCC
Confidence 56778999998888765 3 678888886653
No 59
>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.11 E-value=9.8 Score=24.05 Aligned_cols=11 Identities=27% Similarity=1.011 Sum_probs=8.8
Q ss_pred CccccccccCC
Q 009298 450 DYKCSLCGTEM 460 (538)
Q Consensus 450 ~~~~~~~~~~~ 460 (538)
-|+|..||...
T Consensus 8 P~~C~~C~k~F 18 (36)
T d2ct1a2 8 PYECYICHARF 18 (36)
T ss_dssp SEECTTTCCEE
T ss_pred CEeCCCCcccc
Confidence 48999999753
No 60
>d2fmpa1 a.60.6.1 (A:10-91) DNA polymerase beta, N-terminal (8 kD)-domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.02 E-value=15 Score=27.46 Aligned_cols=17 Identities=18% Similarity=0.470 Sum_probs=14.8
Q ss_pred cccccCCCHHHHHHHHh
Q 009298 141 IRKIGGIGKVTEHILRD 157 (538)
Q Consensus 141 l~~L~GIG~kt~~kL~~ 157 (538)
+..|||||+.+++++.+
T Consensus 50 l~~i~GIGk~ia~kI~E 66 (82)
T d2fmpa1 50 AKKLPGVGTKIAEKIDE 66 (82)
T ss_dssp HHTSTTCCHHHHHHHHH
T ss_pred HhcCCCccHHHHHHHHH
Confidence 56889999999999876
No 61
>d1a77a1 a.60.7.1 (A:209-316) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=22.02 E-value=19 Score=28.07 Aligned_cols=26 Identities=15% Similarity=0.003 Sum_probs=18.6
Q ss_pred ccccCCCHHHHHHHHhhcCCCchHHHHh
Q 009298 142 RKIGGIGKVTEHILRDVFGINTCEEMLQ 169 (538)
Q Consensus 142 ~~L~GIG~kt~~kL~~~lGI~TlgDL~~ 169 (538)
.-|||||++|+-+|-+.+| ++..+.+
T Consensus 20 pGV~GIGpktA~klIk~~g--~ie~l~~ 45 (108)
T d1a77a1 20 GGVKGIGFKRAYELVRSGV--AKDVLKK 45 (108)
T ss_dssp TCSTTCCHHHHHHHHHTTC--HHHHHHH
T ss_pred CCCCCcCHHHHHHHHHHcC--CHHHHHH
Confidence 3579999999988876566 5555543
No 62
>d2f4ma1 d.3.1.4 (A:164-450) Peptide:N-glycanase 1, PNG1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=21.73 E-value=17 Score=33.81 Aligned_cols=18 Identities=39% Similarity=1.038 Sum_probs=12.3
Q ss_pred CCcceeecCccccccccC
Q 009298 442 KDQFIWLDDYKCSLCGTE 459 (538)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~ 459 (538)
.+-|.|+|-..|+.||.+
T Consensus 73 ~~fF~wv~~ppC~~C~~~ 90 (287)
T d2f4ma1 73 EEFFRWVNNIVCSKCGGE 90 (287)
T ss_dssp HTTCEECSSCCCTTTCCC
T ss_pred hcCceecCCCCCcccCCc
Confidence 345777777777777665
No 63
>d2bcqa1 a.60.6.1 (A:252-327) DNA polymerase lambda {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.64 E-value=16 Score=26.63 Aligned_cols=17 Identities=29% Similarity=0.368 Sum_probs=14.7
Q ss_pred cccccCCCHHHHHHHHh
Q 009298 141 IRKIGGIGKVTEHILRD 157 (538)
Q Consensus 141 l~~L~GIG~kt~~kL~~ 157 (538)
+..|||||+.+.+++.+
T Consensus 48 l~~lpGiG~~i~~kI~E 64 (76)
T d2bcqa1 48 ACSIPGIGKRMAEKIIE 64 (76)
T ss_dssp HHTSTTCCHHHHHHHHH
T ss_pred HhcCCCccHHHHHHHHH
Confidence 56789999999999876
No 64
>d2duya1 a.60.2.7 (A:11-75) Uncharacterized protein TTHA1967 {Thermus thermophilus [TaxId: 274]}
Probab=20.57 E-value=24 Score=25.05 Aligned_cols=29 Identities=21% Similarity=0.321 Sum_probs=21.6
Q ss_pred cccccCCCHHHHHHHHhhcC-CCchHHHHhc
Q 009298 141 IRKIGGIGKVTEHILRDVFG-INTCEEMLQK 170 (538)
Q Consensus 141 l~~L~GIG~kt~~kL~~~lG-I~TlgDL~~l 170 (538)
|..+||||.++++++-. +. +.++.||.+.
T Consensus 19 L~~lpgig~~~A~~Iv~-~R~f~s~edL~~v 48 (65)
T d2duya1 19 LMALPGIGPVLARRIVE-GRPYARVEDLLKV 48 (65)
T ss_dssp HTTSTTCCHHHHHHHHH-TCCCSSGGGGGGS
T ss_pred HHHCCCCCHHHHHHHHH-cCCCCCHHHHHhC
Confidence 45679999999999886 54 5666666654
No 65
>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=20.53 E-value=11 Score=23.72 Aligned_cols=11 Identities=18% Similarity=0.818 Sum_probs=8.7
Q ss_pred CccccccccCC
Q 009298 450 DYKCSLCGTEM 460 (538)
Q Consensus 450 ~~~~~~~~~~~ 460 (538)
-|+|..||...
T Consensus 7 Py~C~~C~k~F 17 (35)
T d1srka_ 7 PFVCRICLSAF 17 (35)
T ss_dssp CEECSSSCCEE
T ss_pred cccCCCCCCcc
Confidence 38999999753
No 66
>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}
Probab=20.41 E-value=12 Score=23.61 Aligned_cols=11 Identities=18% Similarity=0.818 Sum_probs=8.9
Q ss_pred CccccccccCC
Q 009298 450 DYKCSLCGTEM 460 (538)
Q Consensus 450 ~~~~~~~~~~~ 460 (538)
-|+|..||.-.
T Consensus 11 Py~C~~C~k~F 21 (37)
T d1p7aa_ 11 PFQCPDCDRSF 21 (37)
T ss_dssp SBCCTTTCCCB
T ss_pred CeEeCCCCCEe
Confidence 49999999754
Done!