BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 009300
         (538 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2XPL|A Chain A, Crystal Structure Of Iws1(Spn1) Conserved Domain From
           Encephalitozoon Cuniculi
 pdb|2XPL|B Chain B, Crystal Structure Of Iws1(Spn1) Conserved Domain From
           Encephalitozoon Cuniculi
          Length = 148

 Score = 93.6 bits (231), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 47/118 (39%), Positives = 71/118 (60%), Gaps = 6/118 (5%)

Query: 279 NRQGKPAINKLKKLSLLTEVLSKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAI 338
           N +G+PA  K++ +  ++++L  K LQ+  LD G+L  +K WLEPLPD S+PNI IR  +
Sbjct: 31  NLEGRPATGKIENVEEISDILMSKALQESLLDEGILDEIKGWLEPLPDKSMPNIKIRKRL 90

Query: 339 LKILTEFPIDLEQFDRREQLKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKWSRPIF 396
           L +L    I       +E L  SG+GK++ F S + +E+   R  AK LV KW+  +F
Sbjct: 91  LDVLKTMKI------HKEHLVTSGVGKIVYFYSINPKESKEVRASAKALVQKWTNEVF 142


>pdb|2XPN|A Chain A, Crystal Structure Of A Spt6-Iws1(Spn1) Complex From
           Encephalitozoon Cuniculi, Form I
 pdb|2XPO|A Chain A, Crystal Structure Of A Spt6-Iws1(Spn1) Complex From
           Encephalitozoon Cuniculi, Form Ii
 pdb|2XPO|C Chain C, Crystal Structure Of A Spt6-Iws1(Spn1) Complex From
           Encephalitozoon Cuniculi, Form Ii
 pdb|2XPP|A Chain A, Crystal Structure Of A Spt6-Iws1(Spn1) Complex From
           Encephalitozoon Cuniculi, Form Iii
          Length = 145

 Score = 93.2 bits (230), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 47/118 (39%), Positives = 71/118 (60%), Gaps = 6/118 (5%)

Query: 279 NRQGKPAINKLKKLSLLTEVLSKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAI 338
           N +G+PA  K++ +  ++++L  K LQ+  LD G+L  +K WLEPLPD S+PNI IR  +
Sbjct: 28  NLEGRPATGKIENVEEISDILMSKALQESLLDEGILDEIKGWLEPLPDKSMPNIKIRKRL 87

Query: 339 LKILTEFPIDLEQFDRREQLKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKWSRPIF 396
           L +L    I       +E L  SG+GK++ F S + +E+   R  AK LV KW+  +F
Sbjct: 88  LDVLKTMKI------HKEHLVTSGVGKIVYFYSINPKESKEVRASAKALVQKWTNEVF 139


>pdb|3NFQ|A Chain A, Crystal Structure Of The Conserved Central Domain Of Yeast
           Spn1IWS1
 pdb|3NFQ|B Chain B, Crystal Structure Of The Conserved Central Domain Of Yeast
           Spn1IWS1
          Length = 170

 Score = 90.5 bits (223), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 51/143 (35%), Positives = 80/143 (55%), Gaps = 7/143 (4%)

Query: 263 NVMAELEV-TAEEDAELNRQGKPAINKLKKLSLLTEVLSKKQLQQEFLDHGVLTLLKNWL 321
           N+ A+L++ T  +  E       A  K+K L  +  VLSK  L    LD+ +L  ++ WL
Sbjct: 26  NIAAQLDIDTLNKRIETGDTSLIAXQKVKLLPKVVSVLSKANLADTILDNNLLQSVRIWL 85

Query: 322 EPLPDGSLPNINIRAAILKILTEFPIDLEQFDRREQLKKSGLGKVIMFLSKSDEETTSNR 381
           EPLPDGSLP+  I+ ++   L + P+      + E LK+SGLG+V++F +KS        
Sbjct: 86  EPLPDGSLPSFEIQKSLFAALNDLPV------KTEHLKESGLGRVVIFYTKSKRVEAQLA 139

Query: 382 KLAKDLVDKWSRPIFNKSTRFED 404
           +LA+ L+ +W+RPI   S  + D
Sbjct: 140 RLAEKLIAEWTRPIIGASDNYRD 162


>pdb|3O8Z|A Chain A, Crystal Structure Of Spn1 (Iws1) Core Domain
          Length = 152

 Score = 87.0 bits (214), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 49/136 (36%), Positives = 78/136 (57%), Gaps = 7/136 (5%)

Query: 263 NVMAELEV-TAEEDAELNRQGKPAINKLKKLSLLTEVLSKKQLQQEFLDHGVLTLLKNWL 321
           N+ A+L++ T  +  E       A+ K+K L  +  VLSK  L    LD+ +L  ++ WL
Sbjct: 23  NIAAQLDIDTLNKRIETGDTSLIAMQKVKLLPKVVSVLSKANLADTILDNNLLQSVRIWL 82

Query: 322 EPLPDGSLPNINIRAAILKILTEFPIDLEQFDRREQLKKSGLGKVIMFLSKSDEETTSNR 381
           EPLPDGSLP+  I+ ++   L + P+      + E LK+SGLG+V++F +KS        
Sbjct: 83  EPLPDGSLPSFEIQKSLFAALNDLPV------KTEHLKESGLGRVVIFYTKSKRVEAQLA 136

Query: 382 KLAKDLVDKWSRPIFN 397
           +LA+ L+ +W+RPI  
Sbjct: 137 RLAEKLIAEWTRPIIG 152


>pdb|3OAK|A Chain A, Crystal Structure Of A Spn1 (Iws1)-Spt6 Complex
 pdb|3OAK|B Chain B, Crystal Structure Of A Spn1 (Iws1)-Spt6 Complex
          Length = 151

 Score = 85.1 bits (209), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 48/133 (36%), Positives = 77/133 (57%), Gaps = 7/133 (5%)

Query: 263 NVMAELEV-TAEEDAELNRQGKPAINKLKKLSLLTEVLSKKQLQQEFLDHGVLTLLKNWL 321
           N+ A+L++ T  +  E       A+ K+K L  +  VLSK  L    LD+ +L  ++ WL
Sbjct: 25  NIAAQLDIDTLNKRIETGDTSLIAMQKVKLLPKVVSVLSKANLADTILDNNLLQSVRIWL 84

Query: 322 EPLPDGSLPNINIRAAILKILTEFPIDLEQFDRREQLKKSGLGKVIMFLSKSDEETTSNR 381
           EPLPDGSLP+  I+ ++   L + P+      + E LK+SGLG+V++F +KS        
Sbjct: 85  EPLPDGSLPSFEIQKSLFAALNDLPV------KTEHLKESGLGRVVIFYTKSKRVEAQLA 138

Query: 382 KLAKDLVDKWSRP 394
           +LA+ L+ +W+RP
Sbjct: 139 RLAEKLIAEWTRP 151


>pdb|3SKV|A Chain A, Salicylyl-Acyltransferase Ssfx3 From A Tetracycline
           Biosynthetic Pathway
 pdb|3SKV|B Chain B, Salicylyl-Acyltransferase Ssfx3 From A Tetracycline
           Biosynthetic Pathway
          Length = 385

 Score = 31.6 bits (70), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 32/59 (54%), Gaps = 5/59 (8%)

Query: 243 MGKKRKKNE-KSPAEIALLVENVMAELEVTAE----EDAELNRQGKPAINKLKKLSLLT 296
           +G K K  E + PAE ALL   V  EL  T E     DAEL+  G PA +KL +L L T
Sbjct: 103 VGPKPKPGEPQPPAEPALLDVLVDGELARTVELKLDADAELHVDGLPAGDKLVELWLPT 161


>pdb|1HLG|A Chain A, Crystal Structure Of Human Gastric Lipase
 pdb|1HLG|B Chain B, Crystal Structure Of Human Gastric Lipase
          Length = 371

 Score = 29.3 bits (64), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 12/25 (48%), Positives = 15/25 (60%)

Query: 308 FLDHGVLTLLKNWLEPLPDGSLPNI 332
           FL HG+L    NW+  LP+ SL  I
Sbjct: 54  FLQHGLLASATNWISNLPNNSLAFI 78


>pdb|1K8Q|A Chain A, Crystal Structure Of Dog Gastric Lipase In Complex With A
           Phosphonate Inhibitor
 pdb|1K8Q|B Chain B, Crystal Structure Of Dog Gastric Lipase In Complex With A
           Phosphonate Inhibitor
          Length = 377

 Score = 28.5 bits (62), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 12/25 (48%), Positives = 15/25 (60%)

Query: 308 FLDHGVLTLLKNWLEPLPDGSLPNI 332
           FL HG+L    NW+  LP+ SL  I
Sbjct: 62  FLQHGLLASATNWISNLPNNSLAFI 86


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.312    0.130    0.360 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,518,439
Number of Sequences: 62578
Number of extensions: 389923
Number of successful extensions: 695
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 680
Number of HSP's gapped (non-prelim): 11
length of query: 538
length of database: 14,973,337
effective HSP length: 103
effective length of query: 435
effective length of database: 8,527,803
effective search space: 3709594305
effective search space used: 3709594305
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 54 (25.4 bits)