Query 009300
Match_columns 538
No_of_seqs 165 out of 208
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 23:22:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009300.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009300hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpp_A IWS1, ECU08_0440; trans 100.0 1.5E-51 5E-56 378.5 13.5 144 252-401 1-144 (145)
2 3nfq_A Transcription factor IW 100.0 6.7E-51 2.3E-55 382.3 14.4 156 247-408 3-166 (170)
3 1wjt_A Transcription elongatio 97.5 4.4E-05 1.5E-09 66.6 2.5 54 337-397 35-88 (103)
4 1pqv_S STP-alpha, transcriptio 97.0 0.00043 1.5E-08 70.2 4.3 54 337-398 25-79 (309)
5 1juq_A ADP-ribosylation factor 51.6 93 0.0032 28.6 10.0 61 285-346 67-127 (171)
6 3tpo_A Importin subunit alpha- 32.5 72 0.0025 33.0 6.7 78 304-391 412-495 (529)
7 4hxt_A De novo protein OR329; 32.3 2.4E+02 0.0082 24.7 9.3 83 302-394 160-242 (252)
8 4hxt_A De novo protein OR329; 32.0 1.9E+02 0.0064 25.4 8.5 80 303-392 35-114 (252)
9 4b8j_A Importin subunit alpha- 26.4 2E+02 0.0067 29.2 8.5 81 303-391 405-494 (528)
10 4db6_A Armadillo repeat protei 26.3 1.4E+02 0.0048 25.8 6.6 79 303-391 129-207 (210)
11 3ul1_B Importin subunit alpha- 25.7 1.7E+02 0.0058 30.1 8.1 78 304-391 393-476 (510)
12 3eg5_B Protein diaphanous homo 25.6 53 0.0018 33.8 4.2 95 290-389 86-187 (383)
13 4db8_A Armadillo-repeat protei 22.3 4.1E+02 0.014 23.5 9.1 81 301-392 85-166 (252)
14 4db8_A Armadillo-repeat protei 21.1 4.3E+02 0.015 23.3 9.0 76 305-390 47-122 (252)
15 1mhq_A ADP-ribosylation factor 20.8 4.5E+02 0.015 23.4 10.2 59 286-345 56-114 (148)
16 1jdh_A Beta-catenin; beta-cate 20.3 3.5E+02 0.012 26.8 8.9 84 296-390 444-527 (529)
No 1
>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A
Probab=100.00 E-value=1.5e-51 Score=378.52 Aligned_cols=144 Identities=34% Similarity=0.637 Sum_probs=135.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHhhhHHHHHHHhhHhHHHHHHhhhhHHHHHHhhccCCCCCCCC
Q 009300 252 KSPAEIALLVENVMAELEVTAEEDAELNRQGKPAINKLKKLSLLTEVLSKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPN 331 (538)
Q Consensus 252 ~~~~ei~~~v~~Li~~M~~AAe~D~ean~~gkPAl~KLkmLpeV~~~L~K~~Lq~~fLd~giL~vl~~WLePLPDgSLPn 331 (538)
++++||.++|.+|+.+|..||++|+++|++++|||+||+|||+|+.+|+|.+||.+||++|+|++|+.||+|||||||||
T Consensus 1 ~~~~e~~~~~~~l~~~M~~Aa~~D~~a~~~~~PA~~KlklL~~V~~~l~k~~l~~~~ld~giL~~l~~WL~PLpDgsLP~ 80 (145)
T 2xpp_A 1 MDPGTVLEISRSLKKRMQDILKKDNANNLEGRPATGKIENVEEISDILMSKALQESLLDEGILDEIKGWLEPLPDKSMPN 80 (145)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHTCTTTHHHHHHTTHHHHHHHHHSCCTTSCCCC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHhhHHHHHHHHhhHHHHHHHHHcCHHHHHHHHhCcCCCCCCCC
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCccccchHHHHhhcCccceehhhccCchhcHHHHHHHHHHHHHhhhhhhcCCcc
Q 009300 332 INIRAAILKILTEFPIDLEQFDRREQLKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKWSRPIFNKSTR 401 (538)
Q Consensus 332 l~IR~~LLkiL~~LPI~~e~~d~re~Lk~SGLGKvVmfl~K~p~ET~eNKrlA~~LI~kWsRPI~~~ss~ 401 (538)
|+||+.||++|.+|||++ +||++||||||||||++||+||++||++|.+||++|+||||++|++
T Consensus 81 ~~Ir~~lL~~L~~lPI~~------e~Lk~SglGkvv~~l~k~~~et~~nk~la~~Li~~WsRpi~~~s~~ 144 (145)
T 2xpp_A 81 IKIRKRLLDVLKTMKIHK------EHLVTSGVGKIVYFYSINPKESKEVRASAKALVQKWTNEVFKPEGG 144 (145)
T ss_dssp HHHHHHHHHHHHTSCCCH------HHHHHHCHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHCCCCH------HHhhcCCCCcchhhhhcCCccCHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 999999999999999974 7899999999999999999999999999999999999999999875
No 2
>3nfq_A Transcription factor IWS1; SPN1, RNA polymerase II; 1.85A {Saccharomyces cerevisiae} PDB: 3o8z_A 3oak_A
Probab=100.00 E-value=6.7e-51 Score=382.32 Aligned_cols=156 Identities=33% Similarity=0.629 Sum_probs=131.6
Q ss_pred ccccCCCH-HHHHHHHHHHHHHHHHHHHHHHHH-HH------cCChHHHHHhhhHHHHHHHhhHhHHHHHHhhhhHHHHH
Q 009300 247 RKKNEKSP-AEIALLVENVMAELEVTAEEDAEL-NR------QGKPAINKLKKLSLLTEVLSKKQLQQEFLDHGVLTLLK 318 (538)
Q Consensus 247 kkk~~~~~-~ei~~~v~~Li~~M~~AAe~D~ea-n~------~gkPAl~KLkmLpeV~~~L~K~~Lq~~fLd~giL~vl~ 318 (538)
||+.+.+. ...++.|.+|+.+|..||++|.++ |+ +++|||+||+|||+|+++|+|.+||.+||++|||++|+
T Consensus 3 ~~~~~~dl~~~~Dd~i~~L~~~M~~Aa~~D~~~~n~~~~~~~~~~PAl~KLkmL~~V~~~L~k~~L~~~~ld~giL~~l~ 82 (170)
T 3nfq_A 3 TRRDEDDLEQYLDEKILRLKDEMNIAAQLDIDTLNKRIETGDTSLIAMQKVKLLPKVVSVLSKANLADTILDNNLLQSVR 82 (170)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCCCCHHHHHHHHHHHHHTCGGGHHHHHHTTHHHHHH
T ss_pred ccchhhhHHHhhhHHHHHHHHHHHHHHHHhHHHHHhhhccccccccHHHHHhhHHHHHHHHhHHHHHHHHHHcchHHHHH
Confidence 34445554 566789999999999999999874 43 57999999999999999999999999999999999999
Q ss_pred HhhccCCCCCCCCHHHHHHHHHHHhcCCCCccccchHHHHhhcCccceehhhccCchhcHHHHHHHHHHHHHhhhhhhcC
Q 009300 319 NWLEPLPDGSLPNINIRAAILKILTEFPIDLEQFDRREQLKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKWSRPIFNK 398 (538)
Q Consensus 319 ~WLePLPDgSLPnl~IR~~LLkiL~~LPI~~e~~d~re~Lk~SGLGKvVmfl~K~p~ET~eNKrlA~~LI~kWsRPI~~~ 398 (538)
.||+||||||||||+||+.||++|.+|||++ +||++||||||||||++||+||++||++|.+||++||||||++
T Consensus 83 ~WLePLpDgSLP~~~Ir~~lL~~L~~lPI~~------e~Lk~SglGkvV~~l~k~~~et~~nkrla~~Li~~WsRpI~~~ 156 (170)
T 3nfq_A 83 IWLEPLPDGSLPSFEIQKSLFAALNDLPVKT------EHLKESGLGRVVIFYTKSKRVEAQLARLAEKLIAEWTRPIIGA 156 (170)
T ss_dssp HHHSCCTTSCCCCHHHHHHHHHHHHTSCCCH------HHHHHHSHHHHHHHHHHCTTSCHHHHHHHHHHHHHHTCCCC--
T ss_pred HHhCcCCCCCCCcHHHHHHHHHHHHHCCCCH------HHHhhCCCCceeeehhcCCcccHHHHHHHHHHHHHHHHHHhCc
Confidence 9999999999999999999999999999965 6899999999999999999999999999999999999999999
Q ss_pred Cccchhhhhh
Q 009300 399 STRFEDMKTV 408 (538)
Q Consensus 399 ss~Y~d~~~~ 408 (538)
|++|++++..
T Consensus 157 s~~y~~~~~~ 166 (170)
T 3nfq_A 157 SDNYRDKRIM 166 (170)
T ss_dssp ----------
T ss_pred Ccchhhhhhh
Confidence 9999997643
No 3
>1wjt_A Transcription elongation factor S-II protein 3; four-helix bundle, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.48.3.1
Probab=97.46 E-value=4.4e-05 Score=66.59 Aligned_cols=54 Identities=22% Similarity=0.346 Sum_probs=46.4
Q ss_pred HHHHHHhcCCCCccccchHHHHhhcCccceehhhccCchhcHHHHHHHHHHHHHhhhhhhc
Q 009300 337 AILKILTEFPIDLEQFDRREQLKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKWSRPIFN 397 (538)
Q Consensus 337 ~LLkiL~~LPI~~e~~d~re~Lk~SGLGKvVmfl~K~p~ET~eNKrlA~~LI~kWsRPI~~ 397 (538)
.+|+.|..|||.. +.|++++||++|.-|.|| ...++++.+|..||.+|...+-.
T Consensus 35 ~~L~~L~~~~iT~------e~L~~T~IGk~Vn~LrKh-~~~~~V~~lAk~Lv~~WK~~v~~ 88 (103)
T 1wjt_A 35 DLLKKLNSCQMSI------QLLQTTRIGVAVNGVRKH-CSDKEVVSLAKVLIKNWKRLLDS 88 (103)
T ss_dssp HHHHHHHTSCCCH------HHHHHTCHHHHHHHHHHH-CCCSHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHhCCCCCH------HHHHHcchhHHHHHHHcc-CCcHHHHHHHHHHHHHHHHHHHH
Confidence 5788889999854 689999999999999998 24458899999999999988754
No 4
>1pqv_S STP-alpha, transcription elongation factor S-II, DNA; mRNA cleavage, proofreading, BACKTRACKING, gene expression, multiprotein complex; 3.80A {Saccharomyces cerevisiae} SCOP: i.8.1.1 PDB: 1eo0_A
Probab=96.99 E-value=0.00043 Score=70.20 Aligned_cols=54 Identities=26% Similarity=0.426 Sum_probs=44.9
Q ss_pred HHHHHH-hcCCCCccccchHHHHhhcCccceehhhccCchhcHHHHHHHHHHHHHhhhhhhcC
Q 009300 337 AILKIL-TEFPIDLEQFDRREQLKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKWSRPIFNK 398 (538)
Q Consensus 337 ~LLkiL-~~LPI~~e~~d~re~Lk~SGLGKvVmfl~K~p~ET~eNKrlA~~LI~kWsRPI~~~ 398 (538)
.+|+.| ..+||.. +.|+.++||++|..|.+| ..++++.+|..||.+|...|...
T Consensus 25 ~~L~~L~~~~~it~------~~L~~T~IG~~Vn~lrkh--~~~~v~~~Ak~Li~~WK~~v~~~ 79 (309)
T 1pqv_S 25 EILHVLDKEFVPTE------KLLRETKVGVEVNKFKKS--TNVEISKLVKKMISSWKDAINKN 79 (309)
T ss_pred HHHHHHHhcCCCCH------HHHHhCChhHHHHHHHcC--CCHHHHHHHHHHHHHHHHHHHHh
Confidence 455555 5569854 689999999999999999 45589999999999999998664
No 5
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=51.57 E-value=93 Score=28.63 Aligned_cols=61 Identities=15% Similarity=0.219 Sum_probs=48.1
Q ss_pred HHHHHhhhHHHHHHHhhHhHHHHHHhhhhHHHHHHhhccCCCCCCCCHHHHHHHHHHHhcCC
Q 009300 285 AINKLKKLSLLTEVLSKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTEFP 346 (538)
Q Consensus 285 Al~KLkmLpeV~~~L~K~~Lq~~fLd~giL~vl~~WLePLPDgSLPnl~IR~~LLkiL~~LP 346 (538)
++.=|.+|..++.-+- ..+|..+-...+|+.|...+.|-++++-.+..||+.+|.+|...-
T Consensus 67 ql~AL~LLd~~vkNCG-~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 127 (171)
T 1juq_A 67 ALQALTVLEACMKNCG-RRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWT 127 (171)
T ss_dssp HHHHHHHHHHHHHHSH-HHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcC-HHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 4555555666665543 467778888999999999999988888888999999999998753
No 6
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=32.54 E-value=72 Score=32.96 Aligned_cols=78 Identities=19% Similarity=0.280 Sum_probs=58.1
Q ss_pred HHHHHHhhhhHHHHHHhhccCCCCCCCCHHHHHHHHHHHhcCC-----C-CccccchHHHHhhcCccceehhhccCchhc
Q 009300 304 LQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTEFP-----I-DLEQFDRREQLKKSGLGKVIMFLSKSDEET 377 (538)
Q Consensus 304 Lq~~fLd~giL~vl~~WLePLPDgSLPnl~IR~~LLkiL~~LP-----I-~~e~~d~re~Lk~SGLGKvVmfl~K~p~ET 377 (538)
....|++.|++..|..-|. -++-.|+..+|.+|.++= + ..+.+ +..+.++|.=..|..|..|+.
T Consensus 412 ~~~~l~~~g~i~~L~~LL~------~~d~~i~~~~L~aL~nil~~~~~~~~~~~~--~~~iee~ggl~~ie~Lq~~~n-- 481 (529)
T 3tpo_A 412 QIVYLVHCGIIEPLMNLLS------AKDTKIIQVILDAISNIFQAAEKLGETEKL--SIMIEECGGLDKIEALQRHEN-- 481 (529)
T ss_dssp HHHHHHHTTCHHHHHHGGG------CSCHHHHHHHHHHHHHHHHHHHTTTCHHHH--HHHHHHTTCHHHHTGGGGCSS--
T ss_pred HHHHHHHCcCHHHHHHHhc------CCCHHHHHHHHHHHHHHHHHhHhccChHHH--HHHHHHCCcHHHHHHHHcCCC--
Confidence 3456889999999999885 356789998888887751 1 11111 345778888888889988864
Q ss_pred HHHHHHHHHHHHHh
Q 009300 378 TSNRKLAKDLVDKW 391 (538)
Q Consensus 378 ~eNKrlA~~LI~kW 391 (538)
.++..+|..||++|
T Consensus 482 ~~i~~~A~~iie~y 495 (529)
T 3tpo_A 482 ESVYKASLNLIEKY 495 (529)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 57889999999987
No 7
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=32.29 E-value=2.4e+02 Score=24.65 Aligned_cols=83 Identities=13% Similarity=0.171 Sum_probs=61.7
Q ss_pred HhHHHHHHhhhhHHHHHHhhccCCCCCCCCHHHHHHHHHHHhcCCCCccccchHHHHhhcCccceehhhccCchhcHHHH
Q 009300 302 KQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTEFPIDLEQFDRREQLKKSGLGKVIMFLSKSDEETTSNR 381 (538)
Q Consensus 302 ~~Lq~~fLd~giL~vl~~WLePLPDgSLPnl~IR~~LLkiL~~LPI~~e~~d~re~Lk~SGLGKvVmfl~K~p~ET~eNK 381 (538)
......+++.|++..|-..|.. ++..+|...+.+|.+|-.... ..+..|.++|+=..++-+-+++ .+..+
T Consensus 160 ~~~~~~~~~~~~i~~L~~ll~~------~~~~v~~~a~~~L~~l~~~~~--~~~~~l~~~~~i~~L~~ll~~~--~~~v~ 229 (252)
T 4hxt_A 160 DEAIKAIVDAGGVEVLVKLLTS------TDSEVQKEAARALANIASGPT--SAIKAIVDAGGVEVLQKLLTST--DSEVQ 229 (252)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTC------SCHHHHHHHHHHHHHHTTSBH--HHHHHHHHTTHHHHHHHGGGCS--CHHHH
T ss_pred HHHHHHHHHCcCHHHHHHHHCC------CCHHHHHHHHHHHHHHHcCCH--HHHHHHHHCCCHHHHHHHHCCC--cHHHH
Confidence 3445678899999999999872 557999999999999975322 2356788888877777777665 45788
Q ss_pred HHHHHHHHHhhhh
Q 009300 382 KLAKDLVDKWSRP 394 (538)
Q Consensus 382 rlA~~LI~kWsRP 394 (538)
..|-.++..-...
T Consensus 230 ~~a~~~L~~l~~~ 242 (252)
T 4hxt_A 230 KEAQRALENIKSG 242 (252)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcC
Confidence 8888887654443
No 8
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=31.99 E-value=1.9e+02 Score=25.37 Aligned_cols=80 Identities=14% Similarity=0.191 Sum_probs=59.4
Q ss_pred hHHHHHHhhhhHHHHHHhhccCCCCCCCCHHHHHHHHHHHhcCCCCccccchHHHHhhcCccceehhhccCchhcHHHHH
Q 009300 303 QLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTEFPIDLEQFDRREQLKKSGLGKVIMFLSKSDEETTSNRK 382 (538)
Q Consensus 303 ~Lq~~fLd~giL~vl~~WLePLPDgSLPnl~IR~~LLkiL~~LPI~~e~~d~re~Lk~SGLGKvVmfl~K~p~ET~eNKr 382 (538)
.....|++.|++..|-..|.- ++..+|...+.+|.+|-.... ..+..+..+|+-..++-+-++ ..+..+.
T Consensus 35 ~~~~~~~~~g~i~~L~~ll~~------~~~~v~~~a~~~L~~l~~~~~--~~~~~~~~~~~i~~l~~ll~~--~~~~v~~ 104 (252)
T 4hxt_A 35 SAIKAIVDAGGVEVLVKLLTS------TDSEVQKEAARALANIASGPD--EAIKAIVDAGGVEVLVKLLTS--TDSEVQK 104 (252)
T ss_dssp HHHHHHHHTTHHHHHHHHTTC------SCHHHHHHHHHHHHHHTTSCH--HHHHHHHHTTHHHHHHHHTTC--SSHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHhC------CCHHHHHHHHHHHHHHHcCCh--HHHHHHHHCCCHHHHHHHHcC--CCHHHHH
Confidence 367788999999999999874 468999999999999986522 246777777766666655555 3467777
Q ss_pred HHHHHHHHhh
Q 009300 383 LAKDLVDKWS 392 (538)
Q Consensus 383 lA~~LI~kWs 392 (538)
.|-.++..-+
T Consensus 105 ~a~~~L~~l~ 114 (252)
T 4hxt_A 105 EAARALANIA 114 (252)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 7777776554
No 9
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=26.35 E-value=2e+02 Score=29.16 Aligned_cols=81 Identities=16% Similarity=0.107 Sum_probs=55.6
Q ss_pred hHHHHHHhhhhHHHHHHhhccCCCCCCCCHHHHHHHHHHHhcCCCCccc---------cchHHHHhhcCccceehhhccC
Q 009300 303 QLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTEFPIDLEQ---------FDRREQLKKSGLGKVIMFLSKS 373 (538)
Q Consensus 303 ~Lq~~fLd~giL~vl~~WLePLPDgSLPnl~IR~~LLkiL~~LPI~~e~---------~d~re~Lk~SGLGKvVmfl~K~ 373 (538)
.....|++.|++..|-.-|.- ++..|+...+.+|.+|=-..+. ..-...|.++|.-..+..|..|
T Consensus 405 ~~~~~l~~~~~i~~L~~lL~~------~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~ 478 (528)
T 4b8j_A 405 DQIKYLVSEGCIKPLCDLLIC------PDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSH 478 (528)
T ss_dssp HHHHHHHHTTCHHHHHHGGGC------SCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGC
T ss_pred HHHHHHHHCCCHHHHHHHHcC------CCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcC
Confidence 344456677777777766643 5679999999998887210000 0014678888877788888877
Q ss_pred chhcHHHHHHHHHHHHHh
Q 009300 374 DEETTSNRKLAKDLVDKW 391 (538)
Q Consensus 374 p~ET~eNKrlA~~LI~kW 391 (538)
+ ..+++..|..||++.
T Consensus 479 ~--~~~v~~~a~~il~~~ 494 (528)
T 4b8j_A 479 D--NNEIYEKAVKILEAY 494 (528)
T ss_dssp S--SHHHHHHHHHHHHHH
T ss_pred C--CHHHHHHHHHHHHHH
Confidence 6 456899999999763
No 10
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=26.27 E-value=1.4e+02 Score=25.85 Aligned_cols=79 Identities=23% Similarity=0.300 Sum_probs=58.1
Q ss_pred hHHHHHHhhhhHHHHHHhhccCCCCCCCCHHHHHHHHHHHhcCCCCccccchHHHHhhcCccceehhhccCchhcHHHHH
Q 009300 303 QLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTEFPIDLEQFDRREQLKKSGLGKVIMFLSKSDEETTSNRK 382 (538)
Q Consensus 303 ~Lq~~fLd~giL~vl~~WLePLPDgSLPnl~IR~~LLkiL~~LPI~~e~~d~re~Lk~SGLGKvVmfl~K~p~ET~eNKr 382 (538)
.....+++.|++..|-..|.- ++..+|...+.+|.+|-.... ..+..+.+.|+-..++-+-.+ ..+..++
T Consensus 129 ~~~~~~~~~~~i~~L~~ll~~------~~~~v~~~a~~aL~~l~~~~~--~~~~~~~~~g~i~~L~~ll~~--~~~~v~~ 198 (210)
T 4db6_A 129 EQIQAVIDAGALPALVQLLSS------PNEQILQEALWALSNIASGGN--EQKQAVKEAGALEKLEQLQSH--ENEKIQK 198 (210)
T ss_dssp HHHHHHHHTTHHHHHHHHTTC------SCHHHHHHHHHHHHHHHTSCH--HHHHHHHHTTHHHHHHHGGGC--SCHHHHH
T ss_pred HHHHHHHHcCcHHHHHHHHcC------CCHHHHHHHHHHHHHHHcCCc--HHHHHHHHCCCHHHHHHHHhC--CCHHHHH
Confidence 344568889999999988863 578999999999999854321 235678888876666666655 4667888
Q ss_pred HHHHHHHHh
Q 009300 383 LAKDLVDKW 391 (538)
Q Consensus 383 lA~~LI~kW 391 (538)
.|-.++...
T Consensus 199 ~a~~aL~~l 207 (210)
T 4db6_A 199 EAQEALEKL 207 (210)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888877654
No 11
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=25.73 E-value=1.7e+02 Score=30.13 Aligned_cols=78 Identities=21% Similarity=0.296 Sum_probs=57.9
Q ss_pred HHHHHHhhhhHHHHHHhhccCCCCCCCCHHHHHHHHHHHhcCC-----C-CccccchHHHHhhcCccceehhhccCchhc
Q 009300 304 LQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTEFP-----I-DLEQFDRREQLKKSGLGKVIMFLSKSDEET 377 (538)
Q Consensus 304 Lq~~fLd~giL~vl~~WLePLPDgSLPnl~IR~~LLkiL~~LP-----I-~~e~~d~re~Lk~SGLGKvVmfl~K~p~ET 377 (538)
....|++.|++..|..-|. -++..|+..+|.+|.+|= + ..+.+ +..+.++|.=..|-.|..|+.+
T Consensus 393 ~~~~L~~~g~i~~L~~LL~------~~d~~i~~~~L~aL~nil~~~~~~~~~~~~--~~~iee~ggl~~ie~Lq~~~n~- 463 (510)
T 3ul1_B 393 QIVYLVHCGIIEPLMNLLS------AKDTKIIQVILDAISNIFQAAEKLGETEKL--SIMIEECGGLDKIEALQRHENE- 463 (510)
T ss_dssp HHHHHHHTTCHHHHHHGGG------CSCHHHHHHHHHHHHHHHHHHHTTTCHHHH--HHHHHHTTHHHHHHHGGGCSSH-
T ss_pred HHHHHHHCCCHHHHHHHhc------CCCHHHHHHHHHHHHHHHHHhHhccchHHH--HHHHHHcCcHHHHHHHHcCCCH-
Confidence 3456889999999999885 356789999888887651 1 11111 3457788888888899988655
Q ss_pred HHHHHHHHHHHHHh
Q 009300 378 TSNRKLAKDLVDKW 391 (538)
Q Consensus 378 ~eNKrlA~~LI~kW 391 (538)
++.++|..||+++
T Consensus 464 -~i~~~A~~iie~y 476 (510)
T 3ul1_B 464 -SVYKASLNLIEKY 476 (510)
T ss_dssp -HHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHH
Confidence 6888999999887
No 12
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=25.61 E-value=53 Score=33.78 Aligned_cols=95 Identities=18% Similarity=0.065 Sum_probs=55.2
Q ss_pred hhhHHHHHHHhh--HhHHHHHHhhhhHHHHHHhhccCCCCC-----CCCHHHHHHHHHHHhcCCCCccccchHHHHhhcC
Q 009300 290 KKLSLLTEVLSK--KQLQQEFLDHGVLTLLKNWLEPLPDGS-----LPNINIRAAILKILTEFPIDLEQFDRREQLKKSG 362 (538)
Q Consensus 290 kmLpeV~~~L~K--~~Lq~~fLd~giL~vl~~WLePLPDgS-----LPnl~IR~~LLkiL~~LPI~~e~~d~re~Lk~SG 362 (538)
+.|..+.-.|+. ..|...|+ ++.+.+|..+|.-+.... -....++..+++||..+= +...+ ....|....
T Consensus 86 ~~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalm-N~~~G-~~~vl~~~~ 162 (383)
T 3eg5_B 86 SCLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM-NNKFG-IKTMLETEE 162 (383)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHT-SSHHH-HHHHHTCSS
T ss_pred HHHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHh-cchhh-HHHHHcChH
Confidence 345555566666 48889998 778899999998764333 235789999999998773 22111 122333333
Q ss_pred ccceehhhccCchhcHHHHHHHHHHHH
Q 009300 363 LGKVIMFLSKSDEETTSNRKLAKDLVD 389 (538)
Q Consensus 363 LGKvVmfl~K~p~ET~eNKrlA~~LI~ 389 (538)
.=..|...- -...+..+..|-+|+.
T Consensus 163 ~i~~l~~~L--~s~~~~~~~~aleLL~ 187 (383)
T 3eg5_B 163 GILLLVRAM--DPAVPNMMIDAAKLLS 187 (383)
T ss_dssp HHHHHHHTC--CTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHh--CCCchHHHHHHHHHHH
Confidence 222222221 1233456667777763
No 13
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=22.33 E-value=4.1e+02 Score=23.50 Aligned_cols=81 Identities=19% Similarity=0.156 Sum_probs=58.2
Q ss_pred hHhHHHHHHhhhhHHHHHHhhccCCCCCCCCHHHHHHHHHHHhcCCCCccccchH-HHHhhcCccceehhhccCchhcHH
Q 009300 301 KKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTEFPIDLEQFDRR-EQLKKSGLGKVIMFLSKSDEETTS 379 (538)
Q Consensus 301 K~~Lq~~fLd~giL~vl~~WLePLPDgSLPnl~IR~~LLkiL~~LPI~~e~~d~r-e~Lk~SGLGKvVmfl~K~p~ET~e 379 (538)
....+..+++.|++..|-..|.- ++..||...+.+|.+|-...+ .+ ..+..+|+=..++-+-.++ .+.
T Consensus 85 ~~~~~~~i~~~g~i~~L~~lL~~------~~~~v~~~a~~~L~~l~~~~~---~~~~~~~~~~~i~~L~~lL~~~--~~~ 153 (252)
T 4db8_A 85 GNEQIQAVIDAGALPALVQLLSS------PNEQILQEALWALSNIASGGN---EQIQAVIDAGALPALVQLLSSP--NEQ 153 (252)
T ss_dssp CHHHHHHHHHTTHHHHHHHGGGC------SCHHHHHHHHHHHHHHTTSCH---HHHHHHHHTTHHHHHHHGGGCS--CHH
T ss_pred CHHHHHHHHHcCCHHHHHHHHcC------CCHHHHHHHHHHHHHhhcCCc---hHHHHHHHCCCHHHHHHHHhCC--CHH
Confidence 35677889999999999998864 678999999999999965432 23 5677776666666555554 556
Q ss_pred HHHHHHHHHHHhh
Q 009300 380 NRKLAKDLVDKWS 392 (538)
Q Consensus 380 NKrlA~~LI~kWs 392 (538)
.+..|-..+..-+
T Consensus 154 v~~~a~~~L~~l~ 166 (252)
T 4db8_A 154 ILQEALWALSNIA 166 (252)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH
Confidence 6766766665443
No 14
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=21.15 E-value=4.3e+02 Score=23.33 Aligned_cols=76 Identities=20% Similarity=0.170 Sum_probs=54.7
Q ss_pred HHHHHhhhhHHHHHHhhccCCCCCCCCHHHHHHHHHHHhcCCCCccccchHHHHhhcCccceehhhccCchhcHHHHHHH
Q 009300 305 QQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTEFPIDLEQFDRREQLKKSGLGKVIMFLSKSDEETTSNRKLA 384 (538)
Q Consensus 305 q~~fLd~giL~vl~~WLePLPDgSLPnl~IR~~LLkiL~~LPI~~e~~d~re~Lk~SGLGKvVmfl~K~p~ET~eNKrlA 384 (538)
...|++.|++..|-..|.- ++..+|...+.+|.+|-.... ..+..+..+|+-..++-+-+++ .+..+..|
T Consensus 47 ~~~~~~~g~i~~L~~lL~~------~~~~v~~~a~~~L~~l~~~~~--~~~~~i~~~g~i~~L~~lL~~~--~~~v~~~a 116 (252)
T 4db8_A 47 IQAVIDAGALPALVQLLSS------PNEQILQEALWALSNIASGGN--EQIQAVIDAGALPALVQLLSSP--NEQILQEA 116 (252)
T ss_dssp HHHHHHTTHHHHHHHGGGC------SCHHHHHHHHHHHHHHTTSCH--HHHHHHHHTTHHHHHHHGGGCS--CHHHHHHH
T ss_pred HHHHHHcCcHHHHHHHHcC------CCHHHHHHHHHHHHHHhcCCH--HHHHHHHHcCCHHHHHHHHcCC--CHHHHHHH
Confidence 4568889999999888864 347899999999999976322 2467777787766666666564 46677777
Q ss_pred HHHHHH
Q 009300 385 KDLVDK 390 (538)
Q Consensus 385 ~~LI~k 390 (538)
-..+..
T Consensus 117 ~~~L~~ 122 (252)
T 4db8_A 117 LWALSN 122 (252)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666644
No 15
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=20.83 E-value=4.5e+02 Score=23.41 Aligned_cols=59 Identities=19% Similarity=0.263 Sum_probs=43.3
Q ss_pred HHHHhhhHHHHHHHhhHhHHHHHHhhhhHHHHHHhhccCCCCCCCCHHHHHHHHHHHhcC
Q 009300 286 INKLKKLSLLTEVLSKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTEF 345 (538)
Q Consensus 286 l~KLkmLpeV~~~L~K~~Lq~~fLd~giL~vl~~WLePLPDgSLPnl~IR~~LLkiL~~L 345 (538)
+.=|.+|..++.-+- ..+|..+-...+|+.|...+.|=-+++-++..||+.+|.+|...
T Consensus 56 l~AL~LLe~~vkNCG-~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W 114 (148)
T 1mhq_A 56 LYALTVLEMCMNHCG-EKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSW 114 (148)
T ss_dssp HHHHHHHHHHHHHSC-HHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-HHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHH
Confidence 444444555555433 46888888999999999988874445567789999999999875
No 16
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=20.29 E-value=3.5e+02 Score=26.80 Aligned_cols=84 Identities=17% Similarity=0.143 Sum_probs=61.8
Q ss_pred HHHHhhHhHHHHHHhhhhHHHHHHhhccCCCCCCCCHHHHHHHHHHHhcCCCCccccchHHHHhhcCccceehhhccCch
Q 009300 296 TEVLSKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTEFPIDLEQFDRREQLKKSGLGKVIMFLSKSDE 375 (538)
Q Consensus 296 ~~~L~K~~Lq~~fLd~giL~vl~~WLePLPDgSLPnl~IR~~LLkiL~~LPI~~e~~d~re~Lk~SGLGKvVmfl~K~p~ 375 (538)
...+.-...+..|.+.|++..|-.-|. + ++.+|+.....+|.+|-.+.+ .+..+.++|.-..++.|..|+
T Consensus 444 ~~L~~~~~~~~~l~~~~~v~~l~~ll~---~---~~~~v~~~a~~~l~~l~~~~~---~~~~i~~~~~~~~L~~l~~~~- 513 (529)
T 1jdh_A 444 HILARDVHNRIVIRGLNTIPLFVQLLY---S---PIENIQRVAAGVLCELAQDKE---AAEAIEAEGATAPLTELLHSR- 513 (529)
T ss_dssp HHHTTSHHHHHHHHHTTCHHHHHHGGG---C---SCHHHHHHHHHHHHHHTTSHH---HHHHHHHTTCHHHHHHGGGCS-
T ss_pred HHHhcCchHHHHHhccCCccHHHHHHc---C---CchHHHHHHHHHHHHHhcCHH---HHHHHHHcCChHHHHHHhcCC-
Confidence 333344555677899999988887775 2 467899999999998864322 367788888888888888775
Q ss_pred hcHHHHHHHHHHHHH
Q 009300 376 ETTSNRKLAKDLVDK 390 (538)
Q Consensus 376 ET~eNKrlA~~LI~k 390 (538)
.++++..|..++.+
T Consensus 514 -~~~v~~~a~~aL~~ 527 (529)
T 1jdh_A 514 -NEGVATYAAAVLFR 527 (529)
T ss_dssp -SHHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHh
Confidence 56688888877754
Done!