Query 009301
Match_columns 538
No_of_seqs 254 out of 1595
Neff 6.2
Searched_HMMs 46136
Date Thu Mar 28 22:53:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009301.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009301hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00332 Glyco_hydro_17: Glyco 100.0 3.5E-81 7.6E-86 644.2 20.6 309 93-412 1-310 (310)
2 COG5309 Exo-beta-1,3-glucanase 100.0 1.2E-40 2.5E-45 327.0 22.3 251 89-404 42-305 (305)
3 smart00768 X8 Possibly involve 100.0 1.9E-29 4.1E-34 213.1 8.0 85 451-536 1-85 (85)
4 PF03198 Glyco_hydro_72: Gluca 99.9 2.6E-22 5.6E-27 204.1 14.2 235 92-405 29-294 (314)
5 PF07983 X8: X8 domain; Inter 99.9 4.7E-23 1E-27 171.2 5.9 73 451-523 1-78 (78)
6 PF07745 Glyco_hydro_53: Glyco 99.0 1.4E-08 3E-13 106.2 19.3 242 108-409 27-328 (332)
7 COG3867 Arabinogalactan endo-1 98.7 4.9E-07 1.1E-11 91.6 14.6 254 108-411 66-389 (403)
8 PRK10150 beta-D-glucuronidase; 98.3 0.00011 2.3E-09 83.2 23.4 258 92-410 294-585 (604)
9 PF00150 Cellulase: Cellulase 98.1 0.00038 8.2E-09 69.7 20.6 124 91-216 9-166 (281)
10 smart00633 Glyco_10 Glycosyl h 97.5 0.011 2.5E-07 59.6 18.9 212 130-409 20-250 (254)
11 PF11790 Glyco_hydro_cc: Glyco 96.9 0.064 1.4E-06 53.9 17.3 67 325-406 166-232 (239)
12 PF02836 Glyco_hydro_2_C: Glyc 96.7 0.088 1.9E-06 54.2 17.2 96 92-187 17-132 (298)
13 TIGR03356 BGL beta-galactosida 95.8 1.5 3.2E-05 48.0 21.6 78 108-188 57-163 (427)
14 PRK10340 ebgA cryptic beta-D-g 95.3 0.28 6E-06 59.2 14.9 99 91-189 335-452 (1021)
15 PLN02814 beta-glucosidase 94.4 5 0.00011 45.0 20.8 78 108-188 80-187 (504)
16 PLN02998 beta-glucosidase 94.0 6.4 0.00014 44.0 20.5 42 108-150 85-146 (497)
17 PLN02849 beta-glucosidase 93.3 14 0.00031 41.3 21.8 40 108-148 82-141 (503)
18 PF02449 Glyco_hydro_42: Beta- 89.3 1.6 3.4E-05 46.6 8.7 82 108-189 13-140 (374)
19 PF01229 Glyco_hydro_39: Glyco 87.2 13 0.00027 41.4 14.4 250 111-407 46-350 (486)
20 PRK09593 arb 6-phospho-beta-gl 85.9 63 0.0014 36.0 24.3 43 108-151 76-139 (478)
21 PRK09936 hypothetical protein; 85.6 18 0.00039 37.6 13.4 132 79-210 8-170 (296)
22 PF00232 Glyco_hydro_1: Glycos 77.2 2 4.4E-05 47.2 3.3 79 108-189 61-169 (455)
23 COG3934 Endo-beta-mannanase [C 75.8 6.9 0.00015 43.2 6.7 61 162-223 123-184 (587)
24 PRK09525 lacZ beta-D-galactosi 73.6 24 0.00052 43.0 11.3 98 92-189 352-465 (1027)
25 PF03662 Glyco_hydro_79n: Glyc 72.0 11 0.00023 39.9 6.9 82 130-211 113-202 (319)
26 cd02875 GH18_chitobiase Chitob 69.6 31 0.00067 36.8 9.9 95 118-215 55-151 (358)
27 PLN03059 beta-galactosidase; P 65.1 1.6E+02 0.0035 35.2 15.2 115 108-225 62-223 (840)
28 PF00925 GTP_cyclohydro2: GTP 64.1 8.2 0.00018 36.8 3.8 37 111-147 132-168 (169)
29 PRK13511 6-phospho-beta-galact 62.7 27 0.00058 38.7 8.1 43 108-151 57-119 (469)
30 PF14488 DUF4434: Domain of un 62.0 1.3E+02 0.0029 28.5 11.7 100 108-212 23-151 (166)
31 PRK00393 ribA GTP cyclohydrola 59.7 14 0.0003 36.2 4.7 36 111-146 134-169 (197)
32 TIGR00505 ribA GTP cyclohydrol 59.4 14 0.00031 35.9 4.7 34 111-144 131-164 (191)
33 COG4782 Uncharacterized protei 53.9 47 0.001 35.8 7.6 60 302-364 125-187 (377)
34 TIGR01579 MiaB-like-C MiaB-lik 53.8 1.3E+02 0.0027 32.6 11.3 58 198-275 275-332 (414)
35 COG2730 BglC Endoglucanase [Ca 52.4 1E+02 0.0022 33.4 10.4 106 108-213 76-219 (407)
36 cd00641 GTP_cyclohydro2 GTP cy 50.0 25 0.00054 34.2 4.6 37 111-147 133-169 (193)
37 cd00598 GH18_chitinase-like Th 49.9 43 0.00094 31.9 6.3 84 130-214 53-142 (210)
38 PRK12485 bifunctional 3,4-dihy 49.2 20 0.00044 38.6 4.2 33 111-144 331-363 (369)
39 PRK14019 bifunctional 3,4-dihy 47.6 22 0.00048 38.2 4.2 35 111-146 328-362 (367)
40 PRK09318 bifunctional 3,4-dihy 44.7 30 0.00065 37.5 4.7 37 111-147 320-356 (387)
41 cd02874 GH18_CFLE_spore_hydrol 44.6 1E+02 0.0022 31.9 8.4 83 128-214 47-138 (313)
42 PRK09314 bifunctional 3,4-dihy 44.4 29 0.00062 37.0 4.4 33 111-143 301-334 (339)
43 PLN02831 Bifunctional GTP cycl 44.4 30 0.00065 38.3 4.7 37 111-147 373-409 (450)
44 PRK09311 bifunctional 3,4-dihy 43.6 32 0.00069 37.5 4.7 37 111-147 339-375 (402)
45 PRK09319 bifunctional 3,4-dihy 43.0 32 0.0007 38.9 4.7 37 111-147 343-379 (555)
46 PRK08815 GTP cyclohydrolase; P 42.8 33 0.00072 37.1 4.6 37 111-147 305-341 (375)
47 PF06117 DUF957: Enterobacteri 42.3 40 0.00086 27.2 3.8 40 160-211 12-54 (65)
48 PF13547 GTA_TIM: GTA TIM-barr 41.8 16 0.00035 37.8 2.0 82 175-272 17-111 (299)
49 PF01301 Glyco_hydro_35: Glyco 41.2 2.3E+02 0.0051 29.7 10.6 104 108-216 27-174 (319)
50 PF13547 GTA_TIM: GTA TIM-barr 40.7 28 0.00061 36.1 3.5 41 323-363 205-265 (299)
51 COG1433 Uncharacterized conser 40.2 58 0.0013 29.6 5.1 40 108-147 55-94 (121)
52 COG4213 XylF ABC-type xylose t 39.7 70 0.0015 33.8 6.2 75 130-225 176-252 (341)
53 smart00481 POLIIIAc DNA polyme 38.5 1E+02 0.0022 24.1 5.7 44 105-148 15-63 (67)
54 TIGR01233 lacG 6-phospho-beta- 37.3 1E+02 0.0022 34.3 7.5 43 108-151 56-118 (467)
55 PRK09589 celA 6-phospho-beta-g 35.8 72 0.0015 35.6 6.0 44 108-151 70-133 (476)
56 PF00331 Glyco_hydro_10: Glyco 35.8 61 0.0013 34.0 5.2 220 130-409 63-312 (320)
57 COG3250 LacZ Beta-galactosidas 35.6 1.3E+02 0.0029 35.8 8.4 99 92-190 302-410 (808)
58 PF12876 Cellulase-like: Sugar 34.4 1.1E+02 0.0025 25.5 5.8 51 172-224 5-64 (88)
59 cd06545 GH18_3CO4_chitinase Th 34.0 1.3E+02 0.0027 30.2 7.0 80 130-214 50-133 (253)
60 KOG0626 Beta-glucosidase, lact 32.2 81 0.0018 35.5 5.6 85 308-403 393-486 (524)
61 PRK07198 hypothetical protein; 32.1 40 0.00087 36.6 3.1 38 111-148 338-376 (418)
62 PRK09852 cryptic 6-phospho-bet 32.1 1.6E+02 0.0036 32.7 8.1 44 108-151 74-137 (474)
63 PF02055 Glyco_hydro_30: O-Gly 31.9 7.8E+02 0.017 27.7 15.5 86 137-222 166-278 (496)
64 PF05990 DUF900: Alpha/beta hy 31.1 1.3E+02 0.0027 30.1 6.4 43 318-363 43-88 (233)
65 PRK15014 6-phospho-beta-glucos 30.7 1.5E+02 0.0033 33.0 7.5 40 108-147 72-131 (477)
66 PRK14328 (dimethylallyl)adenos 30.5 4.1E+02 0.0089 29.0 10.8 56 198-273 284-339 (439)
67 cd02876 GH18_SI-CLP Stabilin-1 30.1 3.6E+02 0.0077 27.9 9.8 90 131-223 56-155 (318)
68 COG0807 RibA GTP cyclohydrolas 29.5 96 0.0021 30.5 5.0 39 111-149 133-171 (193)
69 PF14871 GHL6: Hypothetical gl 29.3 1.2E+02 0.0025 27.9 5.3 43 107-149 2-67 (132)
70 PRK14330 (dimethylallyl)adenos 29.1 4.8E+02 0.01 28.5 11.0 56 198-273 277-332 (434)
71 PRK14334 (dimethylallyl)adenos 28.7 6E+02 0.013 27.8 11.7 23 248-271 305-327 (440)
72 PRK14582 pgaB outer membrane N 28.0 2.3E+02 0.0049 33.2 8.5 151 126-403 475-646 (671)
73 cd02873 GH18_IDGF The IDGF's ( 27.0 4.3E+02 0.0094 28.7 10.1 17 198-214 171-187 (413)
74 PRK14327 (dimethylallyl)adenos 26.6 9.6E+02 0.021 27.0 13.0 56 198-273 349-404 (509)
75 PRK14339 (dimethylallyl)adenos 26.4 8.4E+02 0.018 26.5 12.3 56 198-273 267-322 (420)
76 PRK14331 (dimethylallyl)adenos 25.7 8.7E+02 0.019 26.5 12.3 107 198-332 282-388 (437)
77 PLN00196 alpha-amylase; Provis 25.4 2.1E+02 0.0045 31.5 7.3 56 92-147 28-113 (428)
78 PF04909 Amidohydro_2: Amidohy 24.9 4.5E+02 0.0097 25.5 9.1 80 160-267 56-137 (273)
79 PRK09989 hypothetical protein; 24.2 7.1E+02 0.015 24.6 11.4 164 93-274 4-184 (258)
80 cd02872 GH18_chitolectin_chito 22.2 2.3E+02 0.005 29.8 6.8 75 137-212 68-150 (362)
81 TIGR03822 AblA_like_2 lysine-2 22.1 3.6E+02 0.0079 28.2 8.1 41 109-149 157-207 (321)
82 cd01543 PBP1_XylR Ligand-bindi 22.1 2.7E+02 0.0058 27.1 6.9 100 108-227 98-210 (265)
83 PRK13347 coproporphyrinogen II 21.9 85 0.0018 34.5 3.5 18 198-215 265-282 (453)
84 TIGR01125 MiaB-like tRNA modif 20.1 1.1E+03 0.024 25.5 13.2 58 198-275 272-329 (430)
85 PRK14332 (dimethylallyl)adenos 20.0 8.6E+02 0.019 26.8 10.9 109 198-333 288-396 (449)
No 1
>PF00332 Glyco_hydro_17: Glycosyl hydrolases family 17; InterPro: IPR000490 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 17 GH17 from CAZY comprises enzymes with several known activities; endo-1,3-beta-glucosidase (3.2.1.39 from EC); lichenase (3.2.1.73 from EC); exo-1,3-glucanase (3.2.1.58 from EC). Currently these enzymes have only been found in plants and in fungi. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1AQ0_B 1GHR_A 1GHS_B 2CYG_A 3UR8_A 3UR7_B 3EM5_C 3F55_D.
Probab=100.00 E-value=3.5e-81 Score=644.17 Aligned_cols=309 Identities=53% Similarity=0.918 Sum_probs=254.7
Q ss_pred eeEEecCCCCCCCCHHHHHHHHHhcCCCEEEEccCChHHHHHHhcCCCEEEEecCCCchhhhhCChhHHHHHHHHHhhhc
Q 009301 93 IGVNYGRIANNLPSASKVVQLLKSQGIERVKVFDTDAAVLKALSGSGIKVTVDLPNELLFSAAKRPSFAFSWVQKNVAAY 172 (538)
Q Consensus 93 ~GvnYg~~~~n~p~~~~vv~llk~~~i~~VRlY~~d~~vL~A~a~sgI~V~lgv~n~~~~~~a~~~~aa~~Wv~~nv~~y 172 (538)
+|||||+.|+|+|+|.++++++|+++|++||||++|+++|+|++++||+|++||+|+++.++++++.+|..|+++||.+|
T Consensus 1 iGvnyG~~~~nlp~p~~vv~l~ks~~i~~vri~d~~~~iL~a~a~S~i~v~v~vpN~~l~~la~~~~~A~~Wv~~nv~~~ 80 (310)
T PF00332_consen 1 IGVNYGRVGNNLPSPCKVVSLLKSNGITKVRIYDADPSILRAFAGSGIEVMVGVPNEDLASLASSQSAAGSWVRTNVLPY 80 (310)
T ss_dssp EEEEE---SSS---HHHHHHHHHHTT--EEEESS--HHHHHHHTTS--EEEEEE-GGGHHHHHHHHHHHHHHHHHHTCTC
T ss_pred CeEeccCccCCCCCHHHHHHHHHhcccccEEeecCcHHHHHHHhcCCceeeeccChHHHHHhccCHHHHhhhhhhccccc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEeecCccccCCCCChhh-HHHHHHHHHHHHHhCCCCCceeEecccccccccccCCCCCcccCccccchhhhh
Q 009301 173 HPDTQIEAIGVGNEVFVDPHNTTKF-LLPAMKNVHEALVKYNLHSSIKVSSPIALSALQNSYPSSAGSFRPELIEPVFKP 251 (538)
Q Consensus 173 ~p~~~I~~I~VGNEvl~~~~~~~~~-L~~ai~nvk~aL~~~gl~~~I~Vst~~~~~~l~~s~pPS~g~F~~~~~~~~l~~ 251 (538)
+|.++|++|+||||++... ... |+|+|+++|++|++.||+++|||+|+++++++.++||||+|.|++++. .+|++
T Consensus 81 ~~~~~i~~i~VGnEv~~~~---~~~~lvpAm~ni~~aL~~~~L~~~IkVst~~~~~vl~~s~PPS~g~F~~~~~-~~~~~ 156 (310)
T PF00332_consen 81 LPAVNIRYIAVGNEVLTGT---DNAYLVPAMQNIHNALTAAGLSDQIKVSTPHSMDVLSNSFPPSAGVFRSDIA-SVMDP 156 (310)
T ss_dssp TTTSEEEEEEEEES-TCCS---GGGGHHHHHHHHHHHHHHTT-TTTSEEEEEEEGGGEEE-SSGGG-EESHHHH-HHHHH
T ss_pred CcccceeeeecccccccCc---cceeeccHHHHHHHHHHhcCcCCcceeccccccccccccCCCccCcccccch-hhhhH
Confidence 9999999999999999874 334 999999999999999999889999999999999999999999999987 68999
Q ss_pred HHHHHhhcCCceeeccCCCcccCCCCCccccccccccCCCceeeCCCCccccchHHHHHHHHHHHHHhcCCCCccEEEee
Q 009301 252 MLNFLRQTGSFLMVNAYPFFAYESNTDVISLDYALFRENPGVVDAGNGLRYFSLFDAQIDAVFAALSALKYDDIRMVVTE 331 (538)
Q Consensus 252 ~ldFL~~~~s~~~vNiyPyf~~~~~p~~i~ldyAlF~~~~g~~d~~t~~~Y~n~fda~~Dav~~a~~~~g~~~~~VvVsE 331 (538)
+++||.++++|||+|+||||.|..+|.+++||||+|+++.+++|. +++|+||||+|+|++++||+++|+++++|+|+|
T Consensus 157 ~l~fL~~t~spf~vN~yPyfa~~~~~~~~~l~yAlf~~~~~~~D~--~~~y~nlfDa~~da~~~a~~~~g~~~~~vvv~E 234 (310)
T PF00332_consen 157 LLKFLDGTNSPFMVNVYPYFAYQNNPQNISLDYALFQPNSGVVDG--GLAYTNLFDAMVDAVYAAMEKLGFPNVPVVVGE 234 (310)
T ss_dssp HHHHHHHHT--EEEE--HHHHHHHSTTTS-HHHHTT-SSS-SEET--TEEESSHHHHHHHHHHHHHHTTT-TT--EEEEE
T ss_pred HHHHhhccCCCceeccchhhhccCCcccCCccccccccccccccc--chhhhHHHHHHHHHHHHHHHHhCCCCceeEEec
Confidence 999999999999999999999999999999999999998777754 889999999999999999999999999999999
Q ss_pred eccCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCCCCCCCCccEEEEEeecCCCCCCCCCCCccccccCCCceeeecc
Q 009301 332 TGWPSKGDENENGASVENAAAYNGNLVRRILTGGGTPLRPKADLTVYLFALFNEDQKPGPTSERNYGLFYPNEEKVYNIP 411 (538)
Q Consensus 332 tGWPS~G~~~~~~as~~Na~~y~~~lv~~~~~~~GTP~rpg~~~~~yiF~lFdE~~K~G~~~E~~wGLf~~dg~pky~l~ 411 (538)
|||||+|+. +|+++||+.|++++++|+. +|||+||+.++++||||+|||+||+|+.+|||||||++||++||+++
T Consensus 235 TGWPs~G~~---~a~~~nA~~~~~nl~~~~~--~gt~~~~~~~~~~y~F~~FdE~~K~~~~~E~~wGlf~~d~~~ky~~~ 309 (310)
T PF00332_consen 235 TGWPSAGDP---GATPENAQAYNQNLIKHVL--KGTPLRPGNGIDVYIFEAFDENWKPGPEVERHWGLFYPDGTPKYDLD 309 (310)
T ss_dssp E---SSSST---TCSHHHHHHHHHHHHHHCC--GBBSSSBSS---EEES-SB--TTSSSSGGGGG--SB-TTSSBSS---
T ss_pred cccccCCCC---CCCcchhHHHHHHHHHHHh--CCCcccCCCCCeEEEEEEecCcCCCCCcccceeeeECCCCCeecCCC
Confidence 999999993 5899999999999999997 59999999999999999999999999889999999999999999998
Q ss_pred c
Q 009301 412 F 412 (538)
Q Consensus 412 ~ 412 (538)
|
T Consensus 310 f 310 (310)
T PF00332_consen 310 F 310 (310)
T ss_dssp -
T ss_pred C
Confidence 6
No 2
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.2e-40 Score=326.97 Aligned_cols=251 Identities=22% Similarity=0.318 Sum_probs=199.9
Q ss_pred ccCceeEEecCCCCCCCCH--HHH---HHHHHhcCCCEEEEccCCh----HHHHHHhcCCCEEEEecCCCchhhhhCChh
Q 009301 89 DAGSIGVNYGRIANNLPSA--SKV---VQLLKSQGIERVKVFDTDA----AVLKALSGSGIKVTVDLPNELLFSAAKRPS 159 (538)
Q Consensus 89 ~~~~~GvnYg~~~~n~p~~--~~v---v~llk~~~i~~VRlY~~d~----~vL~A~a~sgI~V~lgv~n~~~~~~a~~~~ 159 (538)
..++.||+|+++.++..|| +++ +++|++.+. .||+|++|| ++++|+...|++|.+|||..+...-+
T Consensus 42 a~g~~~f~l~~~n~dGtCKSa~~~~sDLe~l~~~t~-~IR~Y~sDCn~le~v~pAa~~~g~kv~lGiw~tdd~~~~---- 116 (305)
T COG5309 42 ASGFLAFTLGPYNDDGTCKSADQVASDLELLASYTH-SIRTYGSDCNTLENVLPAAEASGFKVFLGIWPTDDIHDA---- 116 (305)
T ss_pred cccccceeccccCCCCCCcCHHHHHhHHHHhccCCc-eEEEeeccchhhhhhHHHHHhcCceEEEEEeeccchhhh----
Confidence 4567899999999987776 444 667777654 999999997 67899999999999999985432221
Q ss_pred HHHHHHHHHhhhcCCCCeEEEEeecCccccCCCCChhh-HHHHHHHHHHHHHhCCCCCceeEecccccccccccCCCCCc
Q 009301 160 FAFSWVQKNVAAYHPDTQIEAIGVGNEVFVDPHNTTKF-LLPAMKNVHEALVKYNLHSSIKVSSPIALSALQNSYPSSAG 238 (538)
Q Consensus 160 aa~~Wv~~nv~~y~p~~~I~~I~VGNEvl~~~~~~~~~-L~~ai~nvk~aL~~~gl~~~I~Vst~~~~~~l~~s~pPS~g 238 (538)
.++-+...+.+|...+.|++|.||||.|++++ ..++ |+.+|.+||.+|+++|++ .||+|+++|.++.+.
T Consensus 117 -~~~til~ay~~~~~~d~v~~v~VGnEal~r~~-~tasql~~~I~~vrsav~~agy~--gpV~T~dsw~~~~~n------ 186 (305)
T COG5309 117 -VEKTILSAYLPYNGWDDVTTVTVGNEALNRND-LTASQLIEYIDDVRSAVKEAGYD--GPVTTVDSWNVVINN------ 186 (305)
T ss_pred -HHHHHHHHHhccCCCCceEEEEechhhhhcCC-CCHHHHHHHHHHHHHHHHhcCCC--CceeecccceeeeCC------
Confidence 12235566778888899999999999999975 4566 999999999999999998 599999999998752
Q ss_pred ccCccccchhhhhHHHHHhhcCCceeeccCCCcccCCCCCccccccccccCCCceeeCCCCccccchHHHHHHHHHHHHH
Q 009301 239 SFRPELIEPVFKPMLNFLRQTGSFLMVNAYPFFAYESNTDVISLDYALFRENPGVVDAGNGLRYFSLFDAQIDAVFAALS 318 (538)
Q Consensus 239 ~F~~~~~~~~l~~~ldFL~~~~s~~~vNiyPyf~~~~~p~~i~ldyAlF~~~~g~~d~~t~~~Y~n~fda~~Dav~~a~~ 318 (538)
+.+++..|| +|+|.||||+.....+ +. ..++-.|+..++.+.
T Consensus 187 --------p~l~~~SDf-------ia~N~~aYwd~~~~a~----------------~~------~~f~~~q~e~vqsa~- 228 (305)
T COG5309 187 --------PELCQASDF-------IAANAHAYWDGQTVAN----------------AA------GTFLLEQLERVQSAC- 228 (305)
T ss_pred --------hHHhhhhhh-------hhcccchhccccchhh----------------hh------hHHHHHHHHHHHHhc-
Confidence 334466677 9999999999754311 00 123445677776652
Q ss_pred hcCCCCccEEEeeeccCCCCCCC-CCCCCHHHHHHHHHHHHHHHHhCCCCCCCCCCCccEEEEEeecCCCCC-CC-CCCC
Q 009301 319 ALKYDDIRMVVTETGWPSKGDEN-ENGASVENAAAYNGNLVRRILTGGGTPLRPKADLTVYLFALFNEDQKP-GP-TSER 395 (538)
Q Consensus 319 ~~g~~~~~VvVsEtGWPS~G~~~-~~~as~~Na~~y~~~lv~~~~~~~GTP~rpg~~~~~yiF~lFdE~~K~-G~-~~E~ 395 (538)
| .+|+++|+||||||+|..+ ++.||++||+.|++++++.+++ .++++|+||+|||+||+ |. ++|+
T Consensus 229 --g-~~k~~~v~EtGWPS~G~~~G~a~pS~anq~~~~~~i~~~~~~---------~G~d~fvfeAFdd~WK~~~~y~VEk 296 (305)
T COG5309 229 --G-TKKTVWVTETGWPSDGRTYGSAVPSVANQKIAVQEILNALRS---------CGYDVFVFEAFDDDWKADGSYGVEK 296 (305)
T ss_pred --C-CCccEEEeeccCCCCCCccCCcCCChhHHHHHHHHHHhhhhc---------cCccEEEeeeccccccCccccchhh
Confidence 3 3499999999999999997 4679999999999999998875 47999999999999994 55 7999
Q ss_pred ccccccCCC
Q 009301 396 NYGLFYPNE 404 (538)
Q Consensus 396 ~wGLf~~dg 404 (538)
+||+++.|+
T Consensus 297 ywGv~~s~~ 305 (305)
T COG5309 297 YWGVLSSDR 305 (305)
T ss_pred ceeeeccCC
Confidence 999998764
No 3
>smart00768 X8 Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges.
Probab=99.96 E-value=1.9e-29 Score=213.10 Aligned_cols=85 Identities=56% Similarity=1.078 Sum_probs=82.9
Q ss_pred eeEEecCCCChHHHhhhhcccccCCCCCCcccCCCCCccCCCChhhhHhHHHHHHHHhhCCCCCCCCCCCceEEEecCCC
Q 009301 451 TWCVANAEVGKEKLQRGLDYACGEGGADCRPIQRGATCYNPNTLEAHASFAFNSYYQKQSRAGGSCYFGGAAYVVTQPPS 530 (538)
Q Consensus 451 ~~Cv~~~~~~~~~l~~~l~~aCg~~~~dC~~I~~~g~cy~~~t~~~~aSya~N~Yyq~~~~~~~~CdF~G~a~i~~~~ps 530 (538)
.|||+|+++++++||++||||||++ +||++|++||+||+||++++|||||||+|||++++.+++|||+|+|+++++|||
T Consensus 1 ~wCv~~~~~~~~~l~~~~~yaCg~~-~dC~~I~~~g~c~~~~~~~~~aS~a~N~YYq~~~~~~~aC~F~G~a~~~~~~ps 79 (85)
T smart00768 1 LWCVAKPDADEAALQAALDYACGQG-ADCTAIQPGGSCYSPNTVKAHASYAFNSYYQKQGQSSGACDFGGTATITTTDPS 79 (85)
T ss_pred CccccCCCCCHHHHHHHHHHHhcCC-CCccccCCCCcccCCCCHHHHHHHHHHHHHHHcCCCCCcCCCCCceEEEecCCC
Confidence 4999999999999999999999987 999999999999999999999999999999999999999999999999999999
Q ss_pred CCceee
Q 009301 531 TCSVFY 536 (538)
Q Consensus 531 ~~~C~~ 536 (538)
.++|+|
T Consensus 80 ~~~C~~ 85 (85)
T smart00768 80 TGSCKF 85 (85)
T ss_pred CCccCC
Confidence 999986
No 4
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=99.88 E-value=2.6e-22 Score=204.09 Aligned_cols=235 Identities=24% Similarity=0.363 Sum_probs=126.0
Q ss_pred ceeEEecCCCCC--------CCCH---HHHHHHHHhcCCCEEEEccCCh-----HHHHHHhcCCCEEEEecCCCchhhhh
Q 009301 92 SIGVNYGRIANN--------LPSA---SKVVQLLKSQGIERVKVFDTDA-----AVLKALSGSGIKVTVDLPNELLFSAA 155 (538)
Q Consensus 92 ~~GvnYg~~~~n--------~p~~---~~vv~llk~~~i~~VRlY~~d~-----~vL~A~a~sgI~V~lgv~n~~~~~~a 155 (538)
..||.|-+.++. |..+ ++++++||++|++.||+|+.|| .||++|++.||+|+++|..+.. +|.
T Consensus 29 ikGVaYQp~~~~~~~~~~DPLad~~~C~rDi~~l~~LgiNtIRVY~vdp~~nHd~CM~~~~~aGIYvi~Dl~~p~~-sI~ 107 (314)
T PF03198_consen 29 IKGVAYQPGGSSEPSNYIDPLADPEACKRDIPLLKELGINTIRVYSVDPSKNHDECMSAFADAGIYVILDLNTPNG-SIN 107 (314)
T ss_dssp EEEEE----------SS--GGG-HHHHHHHHHHHHHHT-SEEEES---TTS--HHHHHHHHHTT-EEEEES-BTTB-S--
T ss_pred EeeEEcccCCCCCCccCcCcccCHHHHHHhHHHHHHcCCCEEEEEEeCCCCCHHHHHHHHHhCCCEEEEecCCCCc-ccc
Confidence 479999998762 1122 5789999999999999999985 7999999999999999998733 333
Q ss_pred C-ChhHHHHHH-------HHHhhhcCCCCeEEEEeecCccccCCCCC-hhh-HHHHHHHHHHHHHhCCCCCceeEecccc
Q 009301 156 K-RPSFAFSWV-------QKNVAAYHPDTQIEAIGVGNEVFVDPHNT-TKF-LLPAMKNVHEALVKYNLHSSIKVSSPIA 225 (538)
Q Consensus 156 ~-~~~aa~~Wv-------~~nv~~y~p~~~I~~I~VGNEvl~~~~~~-~~~-L~~ai~nvk~aL~~~gl~~~I~Vst~~~ 225 (538)
+ ++ +..|- ..-|..+...+|+.++++||||+...... .++ +++++|++|+++++.+++. |||+++-+
T Consensus 108 r~~P--~~sw~~~l~~~~~~vid~fa~Y~N~LgFf~GNEVin~~~~t~aap~vKAavRD~K~Yi~~~~~R~-IPVGYsaa 184 (314)
T PF03198_consen 108 RSDP--APSWNTDLLDRYFAVIDAFAKYDNTLGFFAGNEVINDASNTNAAPYVKAAVRDMKAYIKSKGYRS-IPVGYSAA 184 (314)
T ss_dssp TTS--------HHHHHHHHHHHHHHTT-TTEEEEEEEESSS-STT-GGGHHHHHHHHHHHHHHHHHSSS-----EEEEE-
T ss_pred CCCC--cCCCCHHHHHHHHHHHHHhccCCceEEEEecceeecCCCCcccHHHHHHHHHHHHHHHHhcCCCC-CceeEEcc
Confidence 2 33 22442 22234444459999999999999886333 456 9999999999999999985 99999865
Q ss_pred cccccccCCCCCcccCccccchhhhhHHHHHhhc-----CCceeeccCCCcccCCCCCccccccccccCCCceeeCCCCc
Q 009301 226 LSALQNSYPSSAGSFRPELIEPVFKPMLNFLRQT-----GSFLMVNAYPFFAYESNTDVISLDYALFRENPGVVDAGNGL 300 (538)
Q Consensus 226 ~~~l~~s~pPS~g~F~~~~~~~~l~~~ldFL~~~-----~s~~~vNiyPyf~~~~~p~~i~ldyAlF~~~~g~~d~~t~~ 300 (538)
... ....++.+||.|. .|++++|.|.|+... .|+. +|
T Consensus 185 D~~------------------~~r~~~a~Yl~Cg~~~~~iDf~g~N~Y~WCg~S-----------tf~~-SG-------- 226 (314)
T PF03198_consen 185 DDA------------------EIRQDLANYLNCGDDDERIDFFGLNSYEWCGDS-----------TFET-SG-------- 226 (314)
T ss_dssp --T------------------TTHHHHHHHTTBTT-----S-EEEEE----SS-------------HHH-HS--------
T ss_pred CCh------------------hHHHHHHHHhcCCCcccccceeeeccceecCCC-----------cccc-cc--------
Confidence 431 1223667777764 488999999997542 2332 22
Q ss_pred cccchHHHHHHHHHHHHHhcCCCCccEEEeeeccCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCCCCCCCCccEEEE
Q 009301 301 RYFSLFDAQIDAVFAALSALKYDDIRMVVTETGWPSKGDENENGASVENAAAYNGNLVRRILTGGGTPLRPKADLTVYLF 380 (538)
Q Consensus 301 ~Y~n~fda~~Dav~~a~~~~g~~~~~VvVsEtGWPS~G~~~~~~as~~Na~~y~~~lv~~~~~~~GTP~rpg~~~~~yiF 380 (538)
|..+ ...++ ++ .+||+++|+||.+..++ +|.+ +..+.+.++|....|+ .+|
T Consensus 227 -y~~l--------~~~f~--~y-~vPvffSEyGCn~~~pR-----------~f~e--v~aly~~~Mt~v~SGG----ivY 277 (314)
T PF03198_consen 227 -YDRL--------TKEFS--NY-SVPVFFSEYGCNTVTPR-----------TFTE--VPALYSPEMTDVWSGG----IVY 277 (314)
T ss_dssp -HHHH--------HHHHT--T--SS-EEEEEE---SSSS--------------TH--HHHHTSHHHHTTEEEE----EES
T ss_pred -HHHH--------HHHhh--CC-CCCeEEcccCCCCCCCc-----------cchH--hHHhhCccchhheece----EEE
Confidence 3322 22222 33 69999999999875533 2222 2333322233333332 788
Q ss_pred EeecCCCCCCCCCCCccccccCCCc
Q 009301 381 ALFNEDQKPGPTSERNYGLFYPNEE 405 (538)
Q Consensus 381 ~lFdE~~K~G~~~E~~wGLf~~dg~ 405 (538)
|+|.| +++|||+..++.
T Consensus 278 Ey~~e--------~n~yGlV~~~~~ 294 (314)
T PF03198_consen 278 EYFQE--------ANNYGLVEISGD 294 (314)
T ss_dssp -SB----------SSS--SEEE-TT
T ss_pred EEecc--------CCceEEEEEcCC
Confidence 99998 478999987544
No 5
>PF07983 X8: X8 domain; InterPro: IPR012946 The X8 domain [] contains 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen [] as well as at the C terminus of family 17 glycosyl hydrolases []. This domain may be involved in carbohydrate binding.; PDB: 2JON_A 2W61_A 2W62_A 2W63_A.
Probab=99.88 E-value=4.7e-23 Score=171.24 Aligned_cols=73 Identities=49% Similarity=0.947 Sum_probs=63.2
Q ss_pred eeEEecCCCChHHHhhhhcccccCCCCCCcccCCCCC-----ccCCCChhhhHhHHHHHHHHhhCCCCCCCCCCCceE
Q 009301 451 TWCVANAEVGKEKLQRGLDYACGEGGADCRPIQRGAT-----CYNPNTLEAHASFAFNSYYQKQSRAGGSCYFGGAAY 523 (538)
Q Consensus 451 ~~Cv~~~~~~~~~l~~~l~~aCg~~~~dC~~I~~~g~-----cy~~~t~~~~aSya~N~Yyq~~~~~~~~CdF~G~a~ 523 (538)
+|||+++++++++|+++|||||+++++||++|++||+ .|++|+.++|||||||+|||++++.+.+|||+|+|+
T Consensus 1 l~Cv~~~~~~~~~l~~~l~~aC~~~~~dC~~I~~~g~~G~YG~~S~C~~~~~lSya~N~YY~~~~~~~~~C~F~G~at 78 (78)
T PF07983_consen 1 LWCVAKPDADDKELQDLLDYACGQGGVDCSPIQPNGTTGVYGAYSMCSPRQHLSYAFNQYYQKQGRNSSACDFSGNAT 78 (78)
T ss_dssp -EEEE-TTS-HHHHHHHHHHHTTT-SSSCCCC-EETTTTEE-TTTTS-CCHHHHHHHHHHHHHHTSSCCG-SS-STEE
T ss_pred CcceeCCCCCHHHHHHHHHHHHcCCCCChhhhCCCCcccccccccCCCHHHHHHHHHHHHHHHcCCCCCcCCCCCCCC
Confidence 5999999999999999999999998899999999998 888999999999999999999999999999999996
No 6
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=99.03 E-value=1.4e-08 Score=106.19 Aligned_cols=242 Identities=18% Similarity=0.249 Sum_probs=120.3
Q ss_pred HHHHHHHHhcCCCEEEEccC-C---------hH---HHHHHhcCCCEEEEecCCCchhhh-----------hCChhH---
Q 009301 108 SKVVQLLKSQGIERVKVFDT-D---------AA---VLKALSGSGIKVTVDLPNELLFSA-----------AKRPSF--- 160 (538)
Q Consensus 108 ~~vv~llk~~~i~~VRlY~~-d---------~~---vL~A~a~sgI~V~lgv~n~~~~~~-----------a~~~~a--- 160 (538)
.+++++||..|++.|||=-. | .. ..+.+++.||+|+|..--+|...- ..+.++
T Consensus 27 ~d~~~ilk~~G~N~vRlRvwv~P~~~g~~~~~~~~~~akrak~~Gm~vlldfHYSD~WaDPg~Q~~P~aW~~~~~~~l~~ 106 (332)
T PF07745_consen 27 KDLFQILKDHGVNAVRLRVWVNPYDGGYNDLEDVIALAKRAKAAGMKVLLDFHYSDFWADPGKQNKPAAWANLSFDQLAK 106 (332)
T ss_dssp --HHHHHHHTT--EEEEEE-SS-TTTTTTSHHHHHHHHHHHHHTT-EEEEEE-SSSS--BTTB-B--TTCTSSSHHHHHH
T ss_pred CCHHHHHHhcCCCeEEEEeccCCcccccCCHHHHHHHHHHHHHCCCeEEEeecccCCCCCCCCCCCCccCCCCCHHHHHH
Confidence 67899999999988877421 1 13 345666899999999965432210 011222
Q ss_pred -HHHHHHHHhhhcC-CCCeEEEEeecCccccCC-----CCChhh-HHHHHHHHHHHHHhCCCCCceeEec--cccccccc
Q 009301 161 -AFSWVQKNVAAYH-PDTQIEAIGVGNEVFVDP-----HNTTKF-LLPAMKNVHEALVKYNLHSSIKVSS--PIALSALQ 230 (538)
Q Consensus 161 -a~~Wv~~nv~~y~-p~~~I~~I~VGNEvl~~~-----~~~~~~-L~~ai~nvk~aL~~~gl~~~I~Vst--~~~~~~l~ 230 (538)
..++.++-+...- -+..+..|.||||+-..= ...-.. +...++.-.+++++..-+ +||-. +...+.
T Consensus 107 ~v~~yT~~vl~~l~~~G~~pd~VQVGNEin~Gmlwp~g~~~~~~~~a~ll~ag~~AVr~~~p~--~kV~lH~~~~~~~-- 182 (332)
T PF07745_consen 107 AVYDYTKDVLQALKAAGVTPDMVQVGNEINNGMLWPDGKPSNWDNLAKLLNAGIKAVREVDPN--IKVMLHLANGGDN-- 182 (332)
T ss_dssp HHHHHHHHHHHHHHHTT--ESEEEESSSGGGESTBTTTCTT-HHHHHHHHHHHHHHHHTHSST--SEEEEEES-TTSH--
T ss_pred HHHHHHHHHHHHHHHCCCCccEEEeCccccccccCcCCCccCHHHHHHHHHHHHHHHHhcCCC--CcEEEEECCCCch--
Confidence 2222222222211 146788999999987641 112233 666666666777765543 44433 222111
Q ss_pred ccCCCCCcccCccccchhhhhHHHHHhhc---CCceeeccCCCcccCCCCCccccccccccCCCceeeCCCCccccchHH
Q 009301 231 NSYPSSAGSFRPELIEPVFKPMLNFLRQT---GSFLMVNAYPFFAYESNTDVISLDYALFRENPGVVDAGNGLRYFSLFD 307 (538)
Q Consensus 231 ~s~pPS~g~F~~~~~~~~l~~~ldFL~~~---~s~~~vNiyPyf~~~~~p~~i~ldyAlF~~~~g~~d~~t~~~Y~n~fd 307 (538)
..++-..+-|... =|.++++.||||... + +-+.
T Consensus 183 ----------------~~~~~~f~~l~~~g~d~DviGlSyYP~w~~~-------l---------------------~~l~ 218 (332)
T PF07745_consen 183 ----------------DLYRWFFDNLKAAGVDFDVIGLSYYPFWHGT-------L---------------------EDLK 218 (332)
T ss_dssp ----------------HHHHHHHHHHHHTTGG-SEEEEEE-STTST--------H---------------------HHHH
T ss_pred ----------------HHHHHHHHHHHhcCCCcceEEEecCCCCcch-------H---------------------HHHH
Confidence 0111222223222 299999999998751 0 0111
Q ss_pred HHHHHHHHHHHhcCCCCccEEEeeeccCCCCC---C--CC---------CCCCHHHHHHHHHHHHHHHHhCCCCCCCCCC
Q 009301 308 AQIDAVFAALSALKYDDIRMVVTETGWPSKGD---E--NE---------NGASVENAAAYNGNLVRRILTGGGTPLRPKA 373 (538)
Q Consensus 308 a~~Dav~~a~~~~g~~~~~VvVsEtGWPS~G~---~--~~---------~~as~~Na~~y~~~lv~~~~~~~GTP~rpg~ 373 (538)
..++.+. ++. +|||+|.|||||.... . +. -.+|++.|+.|.+.|++.+.+- |- +.
T Consensus 219 ~~l~~l~---~ry---~K~V~V~Et~yp~t~~d~D~~~n~~~~~~~~~~yp~t~~GQ~~~l~~l~~~v~~~---p~--~~ 287 (332)
T PF07745_consen 219 NNLNDLA---SRY---GKPVMVVETGYPWTLDDGDGTGNIIGATSLISGYPATPQGQADFLRDLINAVKNV---PN--GG 287 (332)
T ss_dssp HHHHHHH---HHH---T-EEEEEEE---SBS--SSSS--SSSSSTGGTTS-SSHHHHHHHHHHHHHHHHTS-------TT
T ss_pred HHHHHHH---HHh---CCeeEEEeccccccccccccccccCccccccCCCCCCHHHHHHHHHHHHHHHHHh---cc--CC
Confidence 2222222 333 6999999999998611 1 11 1268999999999999998762 11 12
Q ss_pred CccEEEEE-eecCCC-----CCCCCCCCccccccCCCceeee
Q 009301 374 DLTVYLFA-LFNEDQ-----KPGPTSERNYGLFYPNEEKVYN 409 (538)
Q Consensus 374 ~~~~yiF~-lFdE~~-----K~G~~~E~~wGLf~~dg~pky~ 409 (538)
++-+|+-| ..-..+ ..|...|+. +||+.+|++--.
T Consensus 288 g~GvfYWeP~w~~~~~~~~~~~g~~w~n~-~lFD~~g~~l~s 328 (332)
T PF07745_consen 288 GLGVFYWEPAWIPVENGWDWGGGSSWDNQ-ALFDFNGNALPS 328 (332)
T ss_dssp EEEEEEE-TT-GGGTTHHHHTTTSSSSBG-SSB-TTSBB-GG
T ss_pred eEEEEeeccccccCCcccccCCCCCcccc-ccCCCCCCCchH
Confidence 34445444 332222 234344444 899988887433
No 7
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=98.66 E-value=4.9e-07 Score=91.60 Aligned_cols=254 Identities=19% Similarity=0.273 Sum_probs=133.7
Q ss_pred HHHHHHHHhcCCCEEEEc------cCC--------h------HHHHHHhcCCCEEEEecCCCchhhhhCChhHHHHHH--
Q 009301 108 SKVVQLLKSQGIERVKVF------DTD--------A------AVLKALSGSGIKVTVDLPNELLFSAAKRPSFAFSWV-- 165 (538)
Q Consensus 108 ~~vv~llk~~~i~~VRlY------~~d--------~------~vL~A~a~sgI~V~lgv~n~~~~~~a~~~~aa~~Wv-- 165 (538)
++.+++||..|++.|||- +.| . ++-+.+.+.||+|++..--+|-..--..+..-.+|.
T Consensus 66 qD~~~iLK~~GvNyvRlRvwndP~dsngn~yggGnnD~~k~ieiakRAk~~GmKVl~dFHYSDfwaDPakQ~kPkaW~~l 145 (403)
T COG3867 66 QDALQILKNHGVNYVRLRVWNDPYDSNGNGYGGGNNDLKKAIEIAKRAKNLGMKVLLDFHYSDFWADPAKQKKPKAWENL 145 (403)
T ss_pred HHHHHHHHHcCcCeEEEEEecCCccCCCCccCCCcchHHHHHHHHHHHHhcCcEEEeeccchhhccChhhcCCcHHhhhc
Confidence 566899999999988873 333 1 233455689999999986654332111111111232
Q ss_pred -----HHHhhhcC---------CCCeEEEEeecCccccC-----CCCChhh-HHHHHHHHHHHHHhCCCCCceeEecccc
Q 009301 166 -----QKNVAAYH---------PDTQIEAIGVGNEVFVD-----PHNTTKF-LLPAMKNVHEALVKYNLHSSIKVSSPIA 225 (538)
Q Consensus 166 -----~~nv~~y~---------p~~~I~~I~VGNEvl~~-----~~~~~~~-L~~ai~nvk~aL~~~gl~~~I~Vst~~~ 225 (538)
+..|-.|- ....+.-|.||||.-.. ++..-.. +...++.--++++... ..|||-.-.+
T Consensus 146 ~fe~lk~avy~yTk~~l~~m~~eGi~pdmVQVGNEtn~gflwp~Ge~~~f~k~a~L~n~g~~avrev~--p~ikv~lHla 223 (403)
T COG3867 146 NFEQLKKAVYSYTKYVLTTMKKEGILPDMVQVGNETNGGFLWPDGEGRNFDKMAALLNAGIRAVREVS--PTIKVALHLA 223 (403)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCccceEeccccCCceeccCCCCcChHHHHHHHHHHhhhhhhcC--CCceEEEEec
Confidence 22332221 13567789999998653 1211112 3333343344444332 3477755332
Q ss_pred cccccccCCCCCcccCccccchhhhhHHHHHhhcCCceeeccCCCcccCCCCCccccccccccCCCceeeCCCCccccch
Q 009301 226 LSALQNSYPSSAGSFRPELIEPVFKPMLNFLRQTGSFLMVNAYPFFAYESNTDVISLDYALFRENPGVVDAGNGLRYFSL 305 (538)
Q Consensus 226 ~~~l~~s~pPS~g~F~~~~~~~~l~~~ldFL~~~~s~~~vNiyPyf~~~~~p~~i~ldyAlF~~~~g~~d~~t~~~Y~n~ 305 (538)
-.. -.+.||- +.+.+-+.-+|| |.|+.-.||||...-+ .| -+||
T Consensus 224 ~g~-------~n~~y~~-~fd~ltk~nvdf-----DVig~SyYpyWhgtl~----nL-------------------~~nl 267 (403)
T COG3867 224 EGE-------NNSLYRW-IFDELTKRNVDF-----DVIGSSYYPYWHGTLN----NL-------------------TTNL 267 (403)
T ss_pred CCC-------CCchhhH-HHHHHHHcCCCc-----eEEeeeccccccCcHH----HH-------------------HhHH
Confidence 221 1223321 122233344555 8899999999986211 00 0122
Q ss_pred HHHHHHHHHHHHHhcCCCCccEEEeeecc--------------CCCCCCCCCCCCHHHHHHHHHHHHHHHHhCC------
Q 009301 306 FDAQIDAVFAALSALKYDDIRMVVTETGW--------------PSKGDENENGASVENAAAYNGNLVRRILTGG------ 365 (538)
Q Consensus 306 fda~~Dav~~a~~~~g~~~~~VvVsEtGW--------------PS~G~~~~~~as~~Na~~y~~~lv~~~~~~~------ 365 (538)
++ +- .+ .+|.|+|.||+. |+.+...+-..+++-|++|.+.+|+.+..-.
T Consensus 268 -~d----ia---~r---Y~K~VmV~Etay~yTlEdgDg~~Nt~~~~~~t~~ypitVQGQat~vrDvie~V~nvp~~~GlG 336 (403)
T COG3867 268 -ND----IA---SR---YHKDVMVVETAYTYTLEDGDGHENTFPSSEQTGGYPITVQGQATFVRDVIEAVKNVPKSNGLG 336 (403)
T ss_pred -HH----HH---HH---hcCeEEEEEecceeeeccCCCCCCcCCcccccCCCceEEechhhHHHHHHHHHHhCCCCCceE
Confidence 11 11 11 369999999997 4333221113678889999999999987521
Q ss_pred -------CCCCCCCCCccE-EEEEeecCCCCCCCCCCCccccccCCCceeeecc
Q 009301 366 -------GTPLRPKADLTV-YLFALFNEDQKPGPTSERNYGLFYPNEEKVYNIP 411 (538)
Q Consensus 366 -------GTP~rpg~~~~~-yiF~lFdE~~K~G~~~E~~wGLf~~dg~pky~l~ 411 (538)
-.|.++|.++.+ |--++-.|+|+.|..+++. -||+-+|.|--.++
T Consensus 337 vFYWEp~wipv~~g~gwat~~~~~y~~e~w~~gsavdNq-aLfdf~G~~LPSl~ 389 (403)
T COG3867 337 VFYWEPAWIPVVLGSGWATSYAAKYDPENWGEGSAVDNQ-ALFDFNGHPLPSLN 389 (403)
T ss_pred EEEecccceeccCCCccccchhhccCcccccCCCccchh-hhhhccCCcCcchh
Confidence 123333322222 2223445566666444433 56666666655543
No 8
>PRK10150 beta-D-glucuronidase; Provisional
Probab=98.30 E-value=0.00011 Score=83.22 Aligned_cols=258 Identities=12% Similarity=0.074 Sum_probs=143.3
Q ss_pred ceeEEecCCCC---CCCCH---HHHHHHHHhcCCCEEEEcc--CChHHHHHHhcCCCEEEEecCCCch------------
Q 009301 92 SIGVNYGRIAN---NLPSA---SKVVQLLKSQGIERVKVFD--TDAAVLKALSGSGIKVTVDLPNELL------------ 151 (538)
Q Consensus 92 ~~GvnYg~~~~---n~p~~---~~vv~llk~~~i~~VRlY~--~d~~vL~A~a~sgI~V~lgv~n~~~------------ 151 (538)
..|+|+-.... ...+. .++++++|+.|++.||+-. .++..+.++-..||.|+.-++.-..
T Consensus 294 lrG~~~h~~~~~~G~a~~~~~~~~d~~l~K~~G~N~vR~sh~p~~~~~~~~cD~~GllV~~E~p~~~~~~~~~~~~~~~~ 373 (604)
T PRK10150 294 FKGFGKHEDADIRGKGLDEVLNVHDHNLMKWIGANSFRTSHYPYSEEMLDLADRHGIVVIDETPAVGLNLSFGAGLEAGN 373 (604)
T ss_pred EEeeeccCCCCccCCcCCHHHHHHHHHHHHHCCCCEEEeccCCCCHHHHHHHHhcCcEEEEecccccccccccccccccc
Confidence 45888743211 11233 3568899999999999932 3568999999999999976642100
Q ss_pred ---hhhh------CChhHHHHHHHHHhhhcCCCCeEEEEeecCccccCCCCChhhHHHHHHHHHHHHHhCCCCCceeEec
Q 009301 152 ---FSAA------KRPSFAFSWVQKNVAAYHPDTQIEAIGVGNEVFVDPHNTTKFLLPAMKNVHEALVKYNLHSSIKVSS 222 (538)
Q Consensus 152 ---~~~a------~~~~aa~~Wv~~nv~~y~p~~~I~~I~VGNEvl~~~~~~~~~L~~ai~nvk~aL~~~gl~~~I~Vst 222 (538)
.... ...++..+-+++.|.++.-..-|..-.+|||.-... .. ....++.+.+.+++.--+ =+|++
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~mv~r~~NHPSIi~Ws~gNE~~~~~--~~--~~~~~~~l~~~~k~~Dpt--R~vt~ 447 (604)
T PRK10150 374 KPKETYSEEAVNGETQQAHLQAIRELIARDKNHPSVVMWSIANEPASRE--QG--AREYFAPLAELTRKLDPT--RPVTC 447 (604)
T ss_pred cccccccccccchhHHHHHHHHHHHHHHhccCCceEEEEeeccCCCccc--hh--HHHHHHHHHHHHHhhCCC--CceEE
Confidence 0000 001122233556666665456688999999974331 11 333445555555544433 36777
Q ss_pred ccccccccccCCCCCcccCccccchhhhhHHHHHhhcCCceeeccCCCcccCCCCCccccccccccCCCceeeCCCCccc
Q 009301 223 PIALSALQNSYPSSAGSFRPELIEPVFKPMLNFLRQTGSFLMVNAYPFFAYESNTDVISLDYALFRENPGVVDAGNGLRY 302 (538)
Q Consensus 223 ~~~~~~l~~s~pPS~g~F~~~~~~~~l~~~ldFL~~~~s~~~vNiyPyf~~~~~p~~i~ldyAlF~~~~g~~d~~t~~~Y 302 (538)
+.... . .+. .+ .+.+.+|+ ++.|.|+=|-. +.++. + ..
T Consensus 448 ~~~~~---~--~~~----~~-----~~~~~~Dv-------~~~N~Y~~wy~--~~~~~----~---------------~~ 485 (604)
T PRK10150 448 VNVMF---A--TPD----TD-----TVSDLVDV-------LCLNRYYGWYV--DSGDL----E---------------TA 485 (604)
T ss_pred Eeccc---C--Ccc----cc-----cccCcccE-------EEEcccceecC--CCCCH----H---------------HH
Confidence 64211 0 000 01 11244555 99998753221 11000 0 00
Q ss_pred cchHHHHHHHHHHHHHhcCCCCccEEEeeeccCCCCCC---CCCCCCHHHHHHHHHHHHHHHHhCCCCCCCCCCCccEEE
Q 009301 303 FSLFDAQIDAVFAALSALKYDDIRMVVTETGWPSKGDE---NENGASVENAAAYNGNLVRRILTGGGTPLRPKADLTVYL 379 (538)
Q Consensus 303 ~n~fda~~Dav~~a~~~~g~~~~~VvVsEtGWPS~G~~---~~~~as~~Na~~y~~~lv~~~~~~~GTP~rpg~~~~~yi 379 (538)
...++..++... ++ + ++|++++|+|+-+..+. ....-+.+.|..|++...+.+.+ +|. -.-.||
T Consensus 486 ~~~~~~~~~~~~---~~--~-~kP~~isEyg~~~~~~~h~~~~~~~~ee~q~~~~~~~~~~~~~------~p~-~~G~~i 552 (604)
T PRK10150 486 EKVLEKELLAWQ---EK--L-HKPIIITEYGADTLAGLHSMYDDMWSEEYQCAFLDMYHRVFDR------VPA-VVGEQV 552 (604)
T ss_pred HHHHHHHHHHHH---Hh--c-CCCEEEEccCCccccccccCCCCCCCHHHHHHHHHHHHHHHhc------CCc-eEEEEE
Confidence 111222222211 11 3 79999999997653211 11125788999998877766553 232 244588
Q ss_pred EEeecCCCCCCC--CCCCccccccCCCceeeec
Q 009301 380 FALFNEDQKPGP--TSERNYGLFYPNEEKVYNI 410 (538)
Q Consensus 380 F~lFdE~~K~G~--~~E~~wGLf~~dg~pky~l 410 (538)
..+||-....|. ....+.||++.||+||-..
T Consensus 553 W~~~D~~~~~g~~~~~g~~~Gl~~~dr~~k~~~ 585 (604)
T PRK10150 553 WNFADFATSQGILRVGGNKKGIFTRDRQPKSAA 585 (604)
T ss_pred EeeeccCCCCCCcccCCCcceeEcCCCCChHHH
Confidence 899996555432 1235789999999998654
No 9
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=98.12 E-value=0.00038 Score=69.72 Aligned_cols=124 Identities=17% Similarity=0.131 Sum_probs=81.0
Q ss_pred CceeEEecCCCCCCCCHHHHHHHHHhcCCCEEEEccC-------------Ch-------HHHHHHhcCCCEEEEecCCCc
Q 009301 91 GSIGVNYGRIANNLPSASKVVQLLKSQGIERVKVFDT-------------DA-------AVLKALSGSGIKVTVDLPNEL 150 (538)
Q Consensus 91 ~~~GvnYg~~~~n~p~~~~vv~llk~~~i~~VRlY~~-------------d~-------~vL~A~a~sgI~V~lgv~n~~ 150 (538)
...|+|-. ..+.. ..+++++.+++.|++.|||.-. +. .+|+++++.||+|++.+....
T Consensus 9 ~~~G~n~~-w~~~~-~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vild~h~~~ 86 (281)
T PF00150_consen 9 NWRGFNTH-WYNPS-ITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYVILDLHNAP 86 (281)
T ss_dssp EEEEEEET-TSGGG-SHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EEEEEEEEST
T ss_pred Eeeeeecc-cCCCC-CHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeEEEEeccCc
Confidence 45577766 22212 6688999999999999999632 11 578899999999999987641
Q ss_pred h----hhhhCChhHHHHHHHH---Hh-hhcCCCCeEEEEeecCccccCCCCC-----hhh-HHHHHHHHHHHHHhCCCCC
Q 009301 151 L----FSAAKRPSFAFSWVQK---NV-AAYHPDTQIEAIGVGNEVFVDPHNT-----TKF-LLPAMKNVHEALVKYNLHS 216 (538)
Q Consensus 151 ~----~~~a~~~~aa~~Wv~~---nv-~~y~p~~~I~~I~VGNEvl~~~~~~-----~~~-L~~ai~nvk~aL~~~gl~~ 216 (538)
. ...........+|+++ .+ ..|-....|.++-+.||+....... ... +.+.++.+.++|++.+-..
T Consensus 87 ~w~~~~~~~~~~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~~~~~~w~~~~~~~~~~~~~~~~~~Ir~~~~~~ 166 (281)
T PF00150_consen 87 GWANGGDGYGNNDTAQAWFKSFWRALAKRYKDNPPVVGWELWNEPNGGNDDANWNAQNPADWQDWYQRAIDAIRAADPNH 166 (281)
T ss_dssp TCSSSTSTTTTHHHHHHHHHHHHHHHHHHHTTTTTTEEEESSSSGCSTTSTTTTSHHHTHHHHHHHHHHHHHHHHTTSSS
T ss_pred cccccccccccchhhHHHHHhhhhhhccccCCCCcEEEEEecCCccccCCccccccccchhhhhHHHHHHHHHHhcCCcc
Confidence 0 1111122223333332 23 3342446688999999998864321 125 8889999999999998764
No 10
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=97.45 E-value=0.011 Score=59.63 Aligned_cols=212 Identities=16% Similarity=0.100 Sum_probs=110.3
Q ss_pred HHHHHHhcCCCEEEE--ecCCCchhhhh------CChhHHHHHHHHHhhhcCCCCeEEEEeecCccccCCCC----Chhh
Q 009301 130 AVLKALSGSGIKVTV--DLPNELLFSAA------KRPSFAFSWVQKNVAAYHPDTQIEAIGVGNEVFVDPHN----TTKF 197 (538)
Q Consensus 130 ~vL~A~a~sgI~V~l--gv~n~~~~~~a------~~~~aa~~Wv~~nv~~y~p~~~I~~I~VGNEvl~~~~~----~~~~ 197 (538)
.+++.+++.||+|.- -+|-...+.-. ...++..+++++.+.+| ...|..+-|.||++..+.. +...
T Consensus 20 ~~~~~a~~~gi~v~gH~l~W~~~~P~W~~~~~~~~~~~~~~~~i~~v~~ry--~g~i~~wdV~NE~~~~~~~~~~~~~w~ 97 (254)
T smart00633 20 AIVNFAKENGIKVRGHTLVWHSQTPDWVFNLSKETLLARLENHIKTVVGRY--KGKIYAWDVVNEALHDNGSGLRRSVWY 97 (254)
T ss_pred HHHHHHHHCCCEEEEEEEeecccCCHhhhcCCHHHHHHHHHHHHHHHHHHh--CCcceEEEEeeecccCCCcccccchHH
Confidence 455666677777622 24533222111 11234566777777776 4569999999999875311 1221
Q ss_pred -HH--HHHHHHHHHHHhCCCCCceeEecccccccccccCCCCCcccCccccchhhhhHHHHHhhcCC---ceeeccCCCc
Q 009301 198 -LL--PAMKNVHEALVKYNLHSSIKVSSPIALSALQNSYPSSAGSFRPELIEPVFKPMLNFLRQTGS---FLMVNAYPFF 271 (538)
Q Consensus 198 -L~--~ai~nvk~aL~~~gl~~~I~Vst~~~~~~l~~s~pPS~g~F~~~~~~~~l~~~ldFL~~~~s---~~~vNiyPyf 271 (538)
.+ .+|+..-+..+++.- ++++-.-+ .++.. ++ . + . .-+..+++.|.+.+- -+++..|-+
T Consensus 98 ~~~G~~~i~~af~~ar~~~P--~a~l~~Nd-y~~~~---~~---~-k---~-~~~~~~v~~l~~~g~~iDgiGlQ~H~~- 162 (254)
T smart00633 98 QILGEDYIEKAFRYAREADP--DAKLFYND-YNTEE---PN---A-K---R-QAIYELVKKLKAKGVPIDGIGLQSHLS- 162 (254)
T ss_pred HhcChHHHHHHHHHHHHhCC--CCEEEEec-cCCcC---cc---H-H---H-HHHHHHHHHHHHCCCccceeeeeeeec-
Confidence 22 444444444444442 25554432 11111 00 0 0 1 122355666655543 333322211
Q ss_pred ccCCCCCccccccccccCCCceeeCCCCccccchHHHHHHHHHHHHHhcCCCCccEEEeeeccCCCCCCCCCCCCHHHHH
Q 009301 272 AYESNTDVISLDYALFRENPGVVDAGNGLRYFSLFDAQIDAVFAALSALKYDDIRMVVTETGWPSKGDENENGASVENAA 351 (538)
Q Consensus 272 ~~~~~p~~i~ldyAlF~~~~g~~d~~t~~~Y~n~fda~~Dav~~a~~~~g~~~~~VvVsEtGWPS~G~~~~~~as~~Na~ 351 (538)
. . +.+ ++.+...|++++-.++||.|||++-+..+ +.+.|+
T Consensus 163 -~-~--------------------------~~~-----~~~~~~~l~~~~~~g~pi~iTE~dv~~~~-------~~~~qA 202 (254)
T smart00633 163 -L-G--------------------------SPN-----IAEIRAALDRFASLGLEIQITELDISGYP-------NPQAQA 202 (254)
T ss_pred -C-C--------------------------CCC-----HHHHHHHHHHHHHcCCceEEEEeecCCCC-------cHHHHH
Confidence 0 0 001 11233334444334799999999988742 337888
Q ss_pred HHHHHHHHHHHhCCCCCCCCCCCccEEEEEeecC-CCCCCCCCCCccccccCCCceeee
Q 009301 352 AYNGNLVRRILTGGGTPLRPKADLTVYLFALFNE-DQKPGPTSERNYGLFYPNEEKVYN 409 (538)
Q Consensus 352 ~y~~~lv~~~~~~~GTP~rpg~~~~~yiF~lFdE-~~K~G~~~E~~wGLf~~dg~pky~ 409 (538)
.+++.+++.+.+. | + ...+++..+.|. .|.++ .+-|||+.|+++|-.
T Consensus 203 ~~~~~~l~~~~~~---p---~-v~gi~~Wg~~d~~~W~~~----~~~~L~d~~~~~kpa 250 (254)
T smart00633 203 ADYEEVFKACLAH---P---A-VTGVTVWGVTDKYSWLDG----GAPLLFDANYQPKPA 250 (254)
T ss_pred HHHHHHHHHHHcC---C---C-eeEEEEeCCccCCcccCC----CCceeECCCCCCChh
Confidence 9999999998863 2 1 122344445543 45543 457899999988754
No 11
>PF11790 Glyco_hydro_cc: Glycosyl hydrolase catalytic core; InterPro: IPR024655 This entry represents the glycosyl hydrolase catalytic core of a group of uncharacterised proteins.
Probab=96.87 E-value=0.064 Score=53.89 Aligned_cols=67 Identities=19% Similarity=0.166 Sum_probs=44.9
Q ss_pred ccEEEeeeccCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCCCCCCCCccEEEEEeecCCCCCCCCCCCccccccCCC
Q 009301 325 IRMVVTETGWPSKGDENENGASVENAAAYNGNLVRRILTGGGTPLRPKADLTVYLFALFNEDQKPGPTSERNYGLFYPNE 404 (538)
Q Consensus 325 ~~VvVsEtGWPS~G~~~~~~as~~Na~~y~~~lv~~~~~~~GTP~rpg~~~~~yiF~lFdE~~K~G~~~E~~wGLf~~dg 404 (538)
+||+|||.|+...+. ..+.+.++.|.+..+..+.+. +. --.++||. |...+. ....+-.|++.+|
T Consensus 166 kPIWITEf~~~~~~~----~~~~~~~~~fl~~~~~~ld~~------~~-VeryawF~-~~~~~~---~~~~~~~L~~~~G 230 (239)
T PF11790_consen 166 KPIWITEFGCWNGGS----QGSDEQQASFLRQALPWLDSQ------PY-VERYAWFG-FMNDGS---GVNPNSALLDADG 230 (239)
T ss_pred CCEEEEeecccCCCC----CCCHHHHHHHHHHHHHHHhcC------CC-eeEEEecc-cccccC---CCccccccccCCC
Confidence 999999999876222 378889999999999988752 22 23456666 222222 3345567777777
Q ss_pred ce
Q 009301 405 EK 406 (538)
Q Consensus 405 ~p 406 (538)
++
T Consensus 231 ~l 232 (239)
T PF11790_consen 231 SL 232 (239)
T ss_pred Cc
Confidence 54
No 12
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=96.69 E-value=0.088 Score=54.22 Aligned_cols=96 Identities=20% Similarity=0.188 Sum_probs=58.7
Q ss_pred ceeEEecCCCCC---CCCH---HHHHHHHHhcCCCEEEEccC--ChHHHHHHhcCCCEEEEecCCCch--hh-------h
Q 009301 92 SIGVNYGRIANN---LPSA---SKVVQLLKSQGIERVKVFDT--DAAVLKALSGSGIKVTVDLPNELL--FS-------A 154 (538)
Q Consensus 92 ~~GvnYg~~~~n---~p~~---~~vv~llk~~~i~~VRlY~~--d~~vL~A~a~sgI~V~lgv~n~~~--~~-------~ 154 (538)
..|||+...... ..+. .++++++|+.|++.||+..- ++..+.++-..||-|+..++.... .. .
T Consensus 17 l~Gv~~h~~~~~~g~a~~~~~~~~d~~l~k~~G~N~iR~~h~p~~~~~~~~cD~~GilV~~e~~~~~~~~~~~~~~~~~~ 96 (298)
T PF02836_consen 17 LRGVNRHQDYPGLGRAMPDEAMERDLELMKEMGFNAIRTHHYPPSPRFYDLCDELGILVWQEIPLEGHGSWQDFGNCNYD 96 (298)
T ss_dssp EEEEEE-S-BTTTBT---HHHHHHHHHHHHHTT-SEEEETTS--SHHHHHHHHHHT-EEEEE-S-BSCTSSSSTSCTSCT
T ss_pred EEEEeeCcCcccccccCCHHHHHHHHHHHHhcCcceEEcccccCcHHHHHHHhhcCCEEEEeccccccCccccCCccccC
Confidence 469998864322 2333 35688999999999999643 578999999999999998866211 00 0
Q ss_pred hCCh---hHHHHHHHHHhhhcCCCCeEEEEeecCcc
Q 009301 155 AKRP---SFAFSWVQKNVAAYHPDTQIEAIGVGNEV 187 (538)
Q Consensus 155 a~~~---~aa~~Wv~~nv~~y~p~~~I~~I~VGNEv 187 (538)
..++ +.+.+-+++.|.++.-...|..=.+|||.
T Consensus 97 ~~~~~~~~~~~~~~~~~v~~~~NHPSIi~W~~gNE~ 132 (298)
T PF02836_consen 97 ADDPEFRENAEQELREMVRRDRNHPSIIMWSLGNES 132 (298)
T ss_dssp TTSGGHHHHHHHHHHHHHHHHTT-TTEEEEEEEESS
T ss_pred CCCHHHHHHHHHHHHHHHHcCcCcCchheeecCccC
Confidence 1122 23344556667666544568888999999
No 13
>TIGR03356 BGL beta-galactosidase.
Probab=95.81 E-value=1.5 Score=47.97 Aligned_cols=78 Identities=15% Similarity=0.158 Sum_probs=48.8
Q ss_pred HHHHHHHHhcCCCEEEEccC-------------C-------hHHHHHHhcCCCEEEEecCCCchh-hhh-----CChh--
Q 009301 108 SKVVQLLKSQGIERVKVFDT-------------D-------AAVLKALSGSGIKVTVDLPNELLF-SAA-----KRPS-- 159 (538)
Q Consensus 108 ~~vv~llk~~~i~~VRlY~~-------------d-------~~vL~A~a~sgI~V~lgv~n~~~~-~~a-----~~~~-- 159 (538)
++++++|+++|++.+|+ +. | .++|..+.+.||+++|.+.--+++ .+. .+++
T Consensus 57 ~eDi~l~~~~G~~~~R~-si~Wsri~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~Hfd~P~~l~~~gGw~~~~~~ 135 (427)
T TIGR03356 57 EEDVALMKELGVDAYRF-SIAWPRIFPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTLYHWDLPQALEDRGGWLNRDTA 135 (427)
T ss_pred HHHHHHHHHcCCCeEEc-ccchhhcccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEeeccCCccHHHHhcCCCCChHHH
Confidence 68999999999999997 22 2 268899999999999999432222 111 1221
Q ss_pred -HHHHHHHHHhhhcCCCCeEEEEeecCccc
Q 009301 160 -FAFSWVQKNVAAYHPDTQIEAIGVGNEVF 188 (538)
Q Consensus 160 -aa~~Wv~~nv~~y~p~~~I~~I~VGNEvl 188 (538)
.-.+..+.-+..| ++.|+....=||+.
T Consensus 136 ~~f~~ya~~~~~~~--~d~v~~w~t~NEp~ 163 (427)
T TIGR03356 136 EWFAEYAAVVAERL--GDRVKHWITLNEPW 163 (427)
T ss_pred HHHHHHHHHHHHHh--CCcCCEEEEecCcc
Confidence 1122223333344 34677777778875
No 14
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=95.30 E-value=0.28 Score=59.24 Aligned_cols=99 Identities=19% Similarity=0.167 Sum_probs=61.6
Q ss_pred CceeEEecCCCCC---CCCH---HHHHHHHHhcCCCEEEEccC--ChHHHHHHhcCCCEEEEecCCC--ch------hhh
Q 009301 91 GSIGVNYGRIANN---LPSA---SKVVQLLKSQGIERVKVFDT--DAAVLKALSGSGIKVTVDLPNE--LL------FSA 154 (538)
Q Consensus 91 ~~~GvnYg~~~~n---~p~~---~~vv~llk~~~i~~VRlY~~--d~~vL~A~a~sgI~V~lgv~n~--~~------~~~ 154 (538)
-..|+|+-..... ..++ .++++++|+.|++.||+-.- ++..+.++-..||.|+.-+... .. ..+
T Consensus 335 ~lrGvnrh~~~p~~G~a~~~e~~~~dl~lmK~~g~NavR~sHyP~~~~fydlcDe~GllV~dE~~~e~~g~~~~~~~~~~ 414 (1021)
T PRK10340 335 KLHGVNRHDNDHRKGRAVGMDRVEKDIQLMKQHNINSVRTAHYPNDPRFYELCDIYGLFVMAETDVESHGFANVGDISRI 414 (1021)
T ss_pred EEEEeecCCCCcccCccCCHHHHHHHHHHHHHCCCCEEEecCCCCCHHHHHHHHHCCCEEEECCcccccCcccccccccc
Confidence 3468886543211 1233 35688999999999999542 3578999999999999865321 00 011
Q ss_pred hCChh---HHHHHHHHHhhhcCCCCeEEEEeecCcccc
Q 009301 155 AKRPS---FAFSWVQKNVAAYHPDTQIEAIGVGNEVFV 189 (538)
Q Consensus 155 a~~~~---aa~~Wv~~nv~~y~p~~~I~~I~VGNEvl~ 189 (538)
..++. +..+-+++.|.++.-..-|..-.+|||.-.
T Consensus 415 ~~~p~~~~~~~~~~~~mV~RdrNHPSIi~WslGNE~~~ 452 (1021)
T PRK10340 415 TDDPQWEKVYVDRIVRHIHAQKNHPSIIIWSLGNESGY 452 (1021)
T ss_pred cCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCccc
Confidence 22221 122335566666544456888899999744
No 15
>PLN02814 beta-glucosidase
Probab=94.44 E-value=5 Score=44.95 Aligned_cols=78 Identities=17% Similarity=0.225 Sum_probs=49.2
Q ss_pred HHHHHHHHhcCCCEEEEccC-------------C-------hHHHHHHhcCCCEEEEecCCCchhh-hhC------ChhH
Q 009301 108 SKVVQLLKSQGIERVKVFDT-------------D-------AAVLKALSGSGIKVTVDLPNELLFS-AAK------RPSF 160 (538)
Q Consensus 108 ~~vv~llk~~~i~~VRlY~~-------------d-------~~vL~A~a~sgI~V~lgv~n~~~~~-~a~------~~~a 160 (538)
+++++++|++|++.-|+ +. | .+++.++.+.||+-+|.+.-=+++. +.. +++.
T Consensus 80 ~EDI~L~k~lG~~ayRf-SIsWsRI~P~G~g~~N~~Gl~fY~~lId~l~~~GI~P~VTL~H~dlP~~L~~~yGGW~n~~~ 158 (504)
T PLN02814 80 KEDVKLMAEMGLESFRF-SISWSRLIPNGRGLINPKGLLFYKNLIKELRSHGIEPHVTLYHYDLPQSLEDEYGGWINRKI 158 (504)
T ss_pred HHHHHHHHHcCCCEEEE-eccHhhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCceEEEecCCCCCHHHHHhcCCcCChhH
Confidence 68999999999888875 32 2 2789999999999999996433332 211 1111
Q ss_pred H---HHHHHHHhhhcCCCCeEEEEeecCccc
Q 009301 161 A---FSWVQKNVAAYHPDTQIEAIGVGNEVF 188 (538)
Q Consensus 161 a---~~Wv~~nv~~y~p~~~I~~I~VGNEvl 188 (538)
+ .+..+.-+..| +++|+.-+.=||+.
T Consensus 159 i~~F~~YA~~~f~~f--gdrVk~WiT~NEP~ 187 (504)
T PLN02814 159 IEDFTAFADVCFREF--GEDVKLWTTINEAT 187 (504)
T ss_pred HHHHHHHHHHHHHHh--CCcCCEEEeccccc
Confidence 1 11112222333 46777777778865
No 16
>PLN02998 beta-glucosidase
Probab=93.99 E-value=6.4 Score=43.99 Aligned_cols=42 Identities=21% Similarity=0.327 Sum_probs=34.2
Q ss_pred HHHHHHHHhcCCCEEEEccC-------------Ch-------HHHHHHhcCCCEEEEecCCCc
Q 009301 108 SKVVQLLKSQGIERVKVFDT-------------DA-------AVLKALSGSGIKVTVDLPNEL 150 (538)
Q Consensus 108 ~~vv~llk~~~i~~VRlY~~-------------d~-------~vL~A~a~sgI~V~lgv~n~~ 150 (538)
+++++++|++|++.-|+ +. |. +++.++.+.||+-+|.+.-=+
T Consensus 85 ~EDi~lmk~lG~~~YRf-SIsWsRI~P~G~g~vN~~gl~~Y~~lid~L~~~GIeP~VTL~H~d 146 (497)
T PLN02998 85 KEDVKLMADMGLEAYRF-SISWSRLLPSGRGPINPKGLQYYNNLIDELITHGIQPHVTLHHFD 146 (497)
T ss_pred HHHHHHHHHcCCCeEEe-eccHHhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCceEEEecCCC
Confidence 68999999999888886 22 22 789999999999999996433
No 17
>PLN02849 beta-glucosidase
Probab=93.29 E-value=14 Score=41.33 Aligned_cols=40 Identities=20% Similarity=0.382 Sum_probs=33.3
Q ss_pred HHHHHHHHhcCCCEEEEccC-------------Ch-------HHHHHHhcCCCEEEEecCC
Q 009301 108 SKVVQLLKSQGIERVKVFDT-------------DA-------AVLKALSGSGIKVTVDLPN 148 (538)
Q Consensus 108 ~~vv~llk~~~i~~VRlY~~-------------d~-------~vL~A~a~sgI~V~lgv~n 148 (538)
++++++++++|++.-|+ +. |+ +++.++.+.||+-+|.+.-
T Consensus 82 ~eDI~Lm~~lG~~aYRf-SIsWsRI~P~G~g~vN~~gl~fY~~lid~l~~~GI~P~VTL~H 141 (503)
T PLN02849 82 KEDVKLMVETGLDAFRF-SISWSRLIPNGRGSVNPKGLQFYKNFIQELVKHGIEPHVTLFH 141 (503)
T ss_pred HHHHHHHHHcCCCeEEE-eccHHhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEeecC
Confidence 68999999999888875 22 22 7899999999999999964
No 18
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=89.26 E-value=1.6 Score=46.59 Aligned_cols=82 Identities=18% Similarity=0.255 Sum_probs=55.1
Q ss_pred HHHHHHHHhcCCCEEEEccC-----C-----------hHHHHHHhcCCCEEEEecCCCchh--------h----------
Q 009301 108 SKVVQLLKSQGIERVKVFDT-----D-----------AAVLKALSGSGIKVTVDLPNELLF--------S---------- 153 (538)
Q Consensus 108 ~~vv~llk~~~i~~VRlY~~-----d-----------~~vL~A~a~sgI~V~lgv~n~~~~--------~---------- 153 (538)
+++++++|+.|++.|||-.. . ..+|+.+++.||+|+++++....+ .
T Consensus 13 ~~d~~~m~~~G~n~vri~~~~W~~lEP~eG~ydF~~lD~~l~~a~~~Gi~viL~~~~~~~P~Wl~~~~Pe~~~~~~~g~~ 92 (374)
T PF02449_consen 13 EEDLRLMKEAGFNTVRIGEFSWSWLEPEEGQYDFSWLDRVLDLAAKHGIKVILGTPTAAPPAWLYDKYPEILPVDADGRR 92 (374)
T ss_dssp HHHHHHHHHHT-SEEEE-CCEHHHH-SBTTB---HHHHHHHHHHHCTT-EEEEEECTTTS-HHHHCCSGCCC-B-TTTSB
T ss_pred HHHHHHHHHcCCCEEEEEEechhhccCCCCeeecHHHHHHHHHHHhccCeEEEEecccccccchhhhcccccccCCCCCc
Confidence 67899999999999998432 1 268899999999999999642100 0
Q ss_pred --hhC-------C---hhHHHHHHHHHhhhcCCCCeEEEEeecCcccc
Q 009301 154 --AAK-------R---PSFAFSWVQKNVAAYHPDTQIEAIGVGNEVFV 189 (538)
Q Consensus 154 --~a~-------~---~~aa~~Wv~~nv~~y~p~~~I~~I~VGNEvl~ 189 (538)
... + ++.+.+.+++.+..|-....|.++.|+||.-.
T Consensus 93 ~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p~vi~~~i~NE~~~ 140 (374)
T PF02449_consen 93 RGFGSRQHYCPNSPAYREYARRFIRALAERYGDHPAVIGWQIDNEPGY 140 (374)
T ss_dssp EECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTTTTEEEEEECCSTTC
T ss_pred CccCCccccchhHHHHHHHHHHHHHHHHhhccccceEEEEEeccccCc
Confidence 000 0 22355666666667765678999999999866
No 19
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=87.17 E-value=13 Score=41.39 Aligned_cols=250 Identities=16% Similarity=0.162 Sum_probs=111.2
Q ss_pred HHHHHhcCCCEEEEccCC-----------------------hHHHHHHhcCCCEEEEecCCC--chh----h-hh-----
Q 009301 111 VQLLKSQGIERVKVFDTD-----------------------AAVLKALSGSGIKVTVDLPNE--LLF----S-AA----- 155 (538)
Q Consensus 111 v~llk~~~i~~VRlY~~d-----------------------~~vL~A~a~sgI~V~lgv~n~--~~~----~-~a----- 155 (538)
..+.+..||++||+...- ..++..+.+.||+-+|-+... .+. . ..
T Consensus 46 ~~~~~~~gf~yvR~h~l~~ddm~~~~~~~~~~~~~Ynf~~lD~i~D~l~~~g~~P~vel~f~p~~~~~~~~~~~~~~~~~ 125 (486)
T PF01229_consen 46 RELQEELGFRYVRFHGLFSDDMMVYSESDEDGIPPYNFTYLDQILDFLLENGLKPFVELGFMPMALASGYQTVFWYKGNI 125 (486)
T ss_dssp HHHHCCS--SEEEES-TTSTTTT-EEEEETTEEEEE--HHHHHHHHHHHHCT-EEEEEE-SB-GGGBSS--EETTTTEE-
T ss_pred HHHHhccCceEEEEEeeccCchhhccccccCCCCcCChHHHHHHHHHHHHcCCEEEEEEEechhhhcCCCCccccccCCc
Confidence 334446789999987541 167899999999998877531 110 0 00
Q ss_pred ---CChhH----HHHHHHHHhhhcCCCCeEE--EEeecCccccCC--CCChhh-HHHHHHHHHHHHHhCCCCCceeEecc
Q 009301 156 ---KRPSF----AFSWVQKNVAAYHPDTQIE--AIGVGNEVFVDP--HNTTKF-LLPAMKNVHEALVKYNLHSSIKVSSP 223 (538)
Q Consensus 156 ---~~~~a----a~~Wv~~nv~~y~p~~~I~--~I~VGNEvl~~~--~~~~~~-L~~ai~nvk~aL~~~gl~~~I~Vst~ 223 (538)
.+.+. ..++++.-+.+|- ...|+ .+=|=||+=... ...... -....+.+.++|++.. ..++|+-+
T Consensus 126 ~pp~~~~~W~~lv~~~~~h~~~RYG-~~ev~~W~fEiWNEPd~~~f~~~~~~~ey~~ly~~~~~~iK~~~--p~~~vGGp 202 (486)
T PF01229_consen 126 SPPKDYEKWRDLVRAFARHYIDRYG-IEEVSTWYFEIWNEPDLKDFWWDGTPEEYFELYDATARAIKAVD--PELKVGGP 202 (486)
T ss_dssp S-BS-HHHHHHHHHHHHHHHHHHHH-HHHHTTSEEEESS-TTSTTTSGGG-HHHHHHHHHHHHHHHHHH---TTSEEEEE
T ss_pred CCcccHHHHHHHHHHHHHHHHhhcC-CccccceeEEeCcCCCcccccCCCCHHHHHHHHHHHHHHHHHhC--CCCcccCc
Confidence 11222 2233333334441 11111 455789964432 111222 5566666777777655 34889887
Q ss_pred cccccccccCCCCCcccCccccchhhhhHHHHHhhc---CCceeeccCCCcccCCCCCccccccccccCCCceeeCCCCc
Q 009301 224 IALSALQNSYPSSAGSFRPELIEPVFKPMLNFLRQT---GSFLMVNAYPFFAYESNTDVISLDYALFRENPGVVDAGNGL 300 (538)
Q Consensus 224 ~~~~~l~~s~pPS~g~F~~~~~~~~l~~~ldFL~~~---~s~~~vNiyPyf~~~~~p~~i~ldyAlF~~~~g~~d~~t~~ 300 (538)
- +..+. . ..+...++|.... -|++..|.||.-...... ......-.
T Consensus 203 ~----~~~~~-----------~-~~~~~~l~~~~~~~~~~DfiS~H~y~~~~~~~~~-------------~~~~~~~~-- 251 (486)
T PF01229_consen 203 A----FAWAY-----------D-EWCEDFLEFCKGNNCPLDFISFHSYGTDSAEDIN-------------ENMYERIE-- 251 (486)
T ss_dssp E----EETT------------T-HHHHHHHHHHHHCT---SEEEEEEE-BESESE-S-------------S-EEEEB---
T ss_pred c----ccccH-----------H-HHHHHHHHHHhcCCCCCCEEEEEecccccccccc-------------hhHHhhhh--
Confidence 1 11000 0 2345666776553 377889998862211100 01111000
Q ss_pred cccchHHHHHHHHHHHHHhcCCCCccEEEeeeccCCCCCCCCC-CCCHHHHHHHHHHHHHHHHhCCCCCCCCCCCccEEE
Q 009301 301 RYFSLFDAQIDAVFAALSALKYDDIRMVVTETGWPSKGDENEN-GASVENAAAYNGNLVRRILTGGGTPLRPKADLTVYL 379 (538)
Q Consensus 301 ~Y~n~fda~~Dav~~a~~~~g~~~~~VvVsEtGWPS~G~~~~~-~as~~Na~~y~~~lv~~~~~~~GTP~rpg~~~~~yi 379 (538)
....+++.. ..+...+...+.+++++.++| |.+.-..... --|.-+|+-..+++++.... .++.|-
T Consensus 252 ~~~~~~~~~-~~~~~~~~~e~~p~~~~~~tE--~n~~~~~~~~~~dt~~~aA~i~k~lL~~~~~----------~l~~~s 318 (486)
T PF01229_consen 252 DSRRLFPEL-KETRPIINDEADPNLPLYITE--WNASISPRNPQHDTCFKAAYIAKNLLSNDGA----------FLDSFS 318 (486)
T ss_dssp -HHHHHHHH-HHHHHHHHTSSSTT--EEEEE--EES-SSTT-GGGGSHHHHHHHHH-HHHHGGG----------T-SEEE
T ss_pred hHHHHHHHH-HHHHHHHhhccCCCCceeecc--cccccCCCcchhccccchhhHHHHHHHhhhh----------hhhhhh
Confidence 011222222 222233445568899999999 7764333211 13445555555555555432 133332
Q ss_pred E----EeecCCCCCCCCCCCccccccCCCcee
Q 009301 380 F----ALFNEDQKPGPTSERNYGLFYPNEEKV 407 (538)
Q Consensus 380 F----~lFdE~~K~G~~~E~~wGLf~~dg~pk 407 (538)
| ..|.|+--+...+-.-|||++.+|-+|
T Consensus 319 ywt~sD~Fee~~~~~~pf~ggfGLlt~~gI~K 350 (486)
T PF01229_consen 319 YWTFSDRFEENGTPRKPFHGGFGLLTKLGIPK 350 (486)
T ss_dssp ES-SBS---TTSS-SSSSSS-S-SEECCCEE-
T ss_pred ccchhhhhhccCCCCCceecchhhhhccCCCc
Confidence 2 245554333234555699999998666
No 20
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=85.94 E-value=63 Score=36.01 Aligned_cols=43 Identities=14% Similarity=0.235 Sum_probs=34.3
Q ss_pred HHHHHHHHhcCCCEEEEccC--------------Ch-------HHHHHHhcCCCEEEEecCCCch
Q 009301 108 SKVVQLLKSQGIERVKVFDT--------------DA-------AVLKALSGSGIKVTVDLPNELL 151 (538)
Q Consensus 108 ~~vv~llk~~~i~~VRlY~~--------------d~-------~vL~A~a~sgI~V~lgv~n~~~ 151 (538)
+++++|+|++|++.-|+ +. |+ +++.++.+.||+-+|.+.-=++
T Consensus 76 ~eDi~Lm~~lG~~aYRf-SIsWsRI~P~G~~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL~H~dl 139 (478)
T PRK09593 76 KEDIALFAEMGFKTYRM-SIAWTRIFPKGDELEPNEAGLQFYEDIFKECHKYGIEPLVTITHFDC 139 (478)
T ss_pred HHHHHHHHHcCCCEEEE-ecchhhcccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecccCC
Confidence 68999999999888875 22 22 6889999999999999964333
No 21
>PRK09936 hypothetical protein; Provisional
Probab=85.56 E-value=18 Score=37.64 Aligned_cols=132 Identities=17% Similarity=0.180 Sum_probs=75.1
Q ss_pred HHHHhhhhccccCceeEEecCCCCCC-CCH---HHHHHHHHhcCCCEEEE-c----cCC--------hHHHHHHhcCCCE
Q 009301 79 FLLLSSFIFADAGSIGVNYGRIANNL-PSA---SKVVQLLKSQGIERVKV-F----DTD--------AAVLKALSGSGIK 141 (538)
Q Consensus 79 ~~~~~~~~~~~~~~~GvnYg~~~~n~-p~~---~~vv~llk~~~i~~VRl-Y----~~d--------~~vL~A~a~sgI~ 141 (538)
+|.++|.+.-.-+.-|+=|-+...+. -++ ++..+.++..|++.+=+ | +.| ...|+++.+.||+
T Consensus 8 ~l~~l~~~~~~~a~~g~F~Qp~n~d~~~~~~qWq~~~~~~~~~G~~tLivQWt~yG~~~fg~~~g~La~~l~~A~~~Gl~ 87 (296)
T PRK09936 8 LLTLLLVSPFSQAMKGIFYQPQNRDSQVTDTQWQGLWSQLRLQGFDTLVVQWTRYGDADFGGQRGWLAKRLAAAQQAGLK 87 (296)
T ss_pred HHHHHHcCchhhccccceeccccccCCCCHHHHHHHHHHHHHcCCcEEEEEeeeccCCCcccchHHHHHHHHHHHHcCCE
Confidence 34444443323345577799987663 244 45677888899987765 2 212 2788999999999
Q ss_pred EEEecCCCch--hhhhCChhHHHHHHHHHhhhcC---------CCCeEEEEeecCccc-cCCCCCh-hh-HHHHHHHHHH
Q 009301 142 VTVDLPNELL--FSAAKRPSFAFSWVQKNVAAYH---------PDTQIEAIGVGNEVF-VDPHNTT-KF-LLPAMKNVHE 207 (538)
Q Consensus 142 V~lgv~n~~~--~~~a~~~~aa~~Wv~~nv~~y~---------p~~~I~~I~VGNEvl-~~~~~~~-~~-L~~ai~nvk~ 207 (538)
|.+|++.|.. ..+..|.++.++|++......+ +...++|--.==|+= +.+.... -. |+..++++.+
T Consensus 88 v~vGL~~Dp~y~q~~~~d~~~~~~yl~~~l~~~~~qa~~~~~~~~~~v~GWYiP~ElDd~~W~~~~rR~~L~~~L~~~~~ 167 (296)
T PRK09936 88 LVVGLYADPEFFMHQKQDGAALESYLNRQLGASLQQARLWSAAWGVPVDGWYLPAELDDLNWRDEARRQPLLTWLNAAQR 167 (296)
T ss_pred EEEcccCChHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHhccCCCCCeEEeeeccchhcccCHHHHHHHHHHHHHHHH
Confidence 9999998742 2343454555566654332211 233444433333432 1221111 13 7778888877
Q ss_pred HHH
Q 009301 208 ALV 210 (538)
Q Consensus 208 aL~ 210 (538)
.|.
T Consensus 168 ~l~ 170 (296)
T PRK09936 168 LID 170 (296)
T ss_pred hCC
Confidence 665
No 22
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=77.15 E-value=2 Score=47.22 Aligned_cols=79 Identities=16% Similarity=0.162 Sum_probs=48.1
Q ss_pred HHHHHHHHhcCCCEEEEccC-------------C-------hHHHHHHhcCCCEEEEecCCCchhh-hh-----CChhHH
Q 009301 108 SKVVQLLKSQGIERVKVFDT-------------D-------AAVLKALSGSGIKVTVDLPNELLFS-AA-----KRPSFA 161 (538)
Q Consensus 108 ~~vv~llk~~~i~~VRlY~~-------------d-------~~vL~A~a~sgI~V~lgv~n~~~~~-~a-----~~~~aa 161 (538)
+++++++|++|++..|+==. | .++++.+...||+.+|.+.--+++. +. .+++..
T Consensus 61 ~eDi~l~~~lg~~~yRfsi~W~Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL~H~~~P~~l~~~ggw~~~~~~ 140 (455)
T PF00232_consen 61 KEDIALMKELGVNAYRFSISWSRIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTLYHFDLPLWLEDYGGWLNRETV 140 (455)
T ss_dssp HHHHHHHHHHT-SEEEEE--HHHHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEEESS--BHHHHHHTGGGSTHHH
T ss_pred hHHHHHHHhhccceeeeecchhheeecccccccCHhHhhhhHHHHHHHHhhccceeeeeeecccccceeecccccCHHHH
Confidence 68999999999999997311 2 1688999999999999996433221 11 122221
Q ss_pred HHHH----HHHhhhcCCCCeEEEEeecCcccc
Q 009301 162 FSWV----QKNVAAYHPDTQIEAIGVGNEVFV 189 (538)
Q Consensus 162 ~~Wv----~~nv~~y~p~~~I~~I~VGNEvl~ 189 (538)
+|. +.-+..| ++.|+..+.=||+..
T Consensus 141 -~~F~~Ya~~~~~~~--gd~V~~w~T~NEp~~ 169 (455)
T PF00232_consen 141 -DWFARYAEFVFERF--GDRVKYWITFNEPNV 169 (455)
T ss_dssp -HHHHHHHHHHHHHH--TTTBSEEEEEETHHH
T ss_pred -HHHHHHHHHHHHHh--CCCcceEEeccccce
Confidence 222 2222333 467888888899764
No 23
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=75.83 E-value=6.9 Score=43.23 Aligned_cols=61 Identities=16% Similarity=0.169 Sum_probs=43.1
Q ss_pred HHHHHHHhhhcCCCCeEEEEeecCccccCCCCChhh-HHHHHHHHHHHHHhCCCCCceeEecc
Q 009301 162 FSWVQKNVAAYHPDTQIEAIGVGNEVFVDPHNTTKF-LLPAMKNVHEALVKYNLHSSIKVSSP 223 (538)
Q Consensus 162 ~~Wv~~nv~~y~p~~~I~~I~VGNEvl~~~~~~~~~-L~~ai~nvk~aL~~~gl~~~I~Vst~ 223 (538)
.+.|.+-|.+|--...|.+-..-||.+.... .... ++...+.+.++|+..+-++-|.|+-+
T Consensus 123 kkyvedlVk~yk~~ptI~gw~l~Ne~lv~~p-~s~N~f~~w~~emy~yiK~ldd~hlvsvGD~ 184 (587)
T COG3934 123 KKYVEDLVKPYKLDPTIAGWALRNEPLVEAP-ISVNNFWDWSGEMYAYIKWLDDGHLVSVGDP 184 (587)
T ss_pred HHHHHHHhhhhccChHHHHHHhcCCcccccc-CChhHHHHHHHHHHHHhhccCCCCeeecCCc
Confidence 5667777777755567888888999776543 3445 88888999999998876654544444
No 24
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=73.55 E-value=24 Score=43.04 Aligned_cols=98 Identities=16% Similarity=0.102 Sum_probs=61.7
Q ss_pred ceeEEecCCCCC---CCCH---HHHHHHHHhcCCCEEEEccC--ChHHHHHHhcCCCEEEEecCCCc-----hhhhhCCh
Q 009301 92 SIGVNYGRIANN---LPSA---SKVVQLLKSQGIERVKVFDT--DAAVLKALSGSGIKVTVDLPNEL-----LFSAAKRP 158 (538)
Q Consensus 92 ~~GvnYg~~~~n---~p~~---~~vv~llk~~~i~~VRlY~~--d~~vL~A~a~sgI~V~lgv~n~~-----~~~~a~~~ 158 (538)
..|+|+-..... ..++ .++++++|+.|++.||+-.. ++..++.+-..||.|+--++... ...+..++
T Consensus 352 lrGvn~h~~~p~~G~a~t~e~~~~di~lmK~~g~NaVR~sHyP~~p~fydlcDe~GilV~dE~~~e~hg~~~~~~~~~dp 431 (1027)
T PRK09525 352 IRGVNRHEHHPEHGQVMDEETMVQDILLMKQHNFNAVRCSHYPNHPLWYELCDRYGLYVVDEANIETHGMVPMNRLSDDP 431 (1027)
T ss_pred EEEeEccccCcccCccCCHHHHHHHHHHHHHCCCCEEEecCCCCCHHHHHHHHHcCCEEEEecCccccCCccccCCCCCH
Confidence 468887543211 2344 35688999999999999432 56889999999999998865421 01112222
Q ss_pred h---HHHHHHHHHhhhcCCCCeEEEEeecCcccc
Q 009301 159 S---FAFSWVQKNVAAYHPDTQIEAIGVGNEVFV 189 (538)
Q Consensus 159 ~---aa~~Wv~~nv~~y~p~~~I~~I~VGNEvl~ 189 (538)
+ +..+-+++.|.+..-..-|..-++|||.-.
T Consensus 432 ~~~~~~~~~~~~mV~RdrNHPSIi~WSlgNE~~~ 465 (1027)
T PRK09525 432 RWLPAMSERVTRMVQRDRNHPSIIIWSLGNESGH 465 (1027)
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEEeCccCCCc
Confidence 2 122224455555544466888999999743
No 25
>PF03662 Glyco_hydro_79n: Glycosyl hydrolase family 79, N-terminal domain ; InterPro: IPR005199 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of endo-beta-N-glucuronidase, or heparanase belonging to glycoside hydrolase family 79 (GH79 from CAZY). Heparan sulphate proteoglycans (HSPGs) play a key role in the self- assembly, insolubility and barrier properties of basement membranes and extracellular matrices. Hence, cleavage of heparan sulphate (HS) affects the integrity and functional state of tissues and thereby fundamental normal and pathological phenomena involving cell migration and response to changes in the extracellular microenvironment. Heparanase degrades HS at specific intrachain sites. The enzyme is synthesized as a latent approximately 65 kDa protein that is processed at the N terminus into a highly active approximately 50 kDa form. Experimental evidence suggests that heparanase may facilitate both tumor cell invasion and neovascularization, both critical steps in cancer progression. The enzyme is also involved in cell migration associated with inflammation and autoimmunity [].; GO: 0016798 hydrolase activity, acting on glycosyl bonds, 0016020 membrane; PDB: 3VNY_A 3VO0_A 3VNZ_A.
Probab=72.02 E-value=11 Score=39.90 Aligned_cols=82 Identities=15% Similarity=0.138 Sum_probs=35.6
Q ss_pred HHHHHHhcCCCEEEEecCCCchhhhhCChhHHHHHHHHHhhhcCC-----CCeEEEEeecCccccCCC--CChhh-HHHH
Q 009301 130 AVLKALSGSGIKVTVDLPNELLFSAAKRPSFAFSWVQKNVAAYHP-----DTQIEAIGVGNEVFVDPH--NTTKF-LLPA 201 (538)
Q Consensus 130 ~vL~A~a~sgI~V~lgv~n~~~~~~a~~~~aa~~Wv~~nv~~y~p-----~~~I~~I~VGNEvl~~~~--~~~~~-L~~a 201 (538)
++-+-+..+|.+|+.|+.--.-.....+....-.|--+|-..++. .-+|.+-=.|||.-..+- ...+. +..-
T Consensus 113 ~l~~F~~~tG~~liFgLNAL~g~~~~~~~~~~g~WnssNA~~Ll~Yt~skgy~I~~WELGNEl~g~g~~~~v~a~qyakD 192 (319)
T PF03662_consen 113 ELNNFAQKTGLKLIFGLNALLGRRQLADRDWDGSWNSSNAQSLLKYTASKGYNIDSWELGNELNGSGVGASVSAEQYAKD 192 (319)
T ss_dssp HHHHHHHHHT-EEEEEE-TTTS-HHHHHHHHHHHHHHH-TTTEEEEEESS-GGG--------HHHHSSSTT--HHHHHHH
T ss_pred HHHHHHHHhCCEEEEEecccCCCCCCCCCCcCCCCChHHHHHHHHHHHHcCCCccccccccccCCCCCCCccCHHHHHHH
Confidence 334445589999999997421111111224456888888655542 356888889999765431 11233 6666
Q ss_pred HHHHHHHHHh
Q 009301 202 MKNVHEALVK 211 (538)
Q Consensus 202 i~nvk~aL~~ 211 (538)
...+|+.|++
T Consensus 193 ~~~Lr~il~~ 202 (319)
T PF03662_consen 193 FIQLRKILNE 202 (319)
T ss_dssp H---HHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666666654
No 26
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=69.55 E-value=31 Score=36.84 Aligned_cols=95 Identities=16% Similarity=0.283 Sum_probs=56.6
Q ss_pred CCCEEEEccC-ChHHHHHHhcCCCEEEEecCCCchhhhhCChhHHHHHHHHHhhhcCCCCeEEEEeecCccccCCCCChh
Q 009301 118 GIERVKVFDT-DAAVLKALSGSGIKVTVDLPNELLFSAAKRPSFAFSWVQKNVAAYHPDTQIEAIGVGNEVFVDPHNTTK 196 (538)
Q Consensus 118 ~i~~VRlY~~-d~~vL~A~a~sgI~V~lgv~n~~~~~~a~~~~aa~~Wv~~nv~~y~p~~~I~~I~VGNEvl~~~~~~~~ 196 (538)
.+++|-+|+- |++++..+...|++|++..-.. ...+ .+++.-.+++++ +..++....+.||-+==|-....+....
T Consensus 55 ~~tti~~~~~~~~~~~~~A~~~~v~v~~~~~~~-~~~l-~~~~~R~~fi~s-iv~~~~~~gfDGIdIDwE~p~~~~~~d~ 131 (358)
T cd02875 55 KVTTIAIFGDIDDELLCYAHSKGVRLVLKGDVP-LEQI-SNPTYRTQWIQQ-KVELAKSQFMDGINIDIEQPITKGSPEY 131 (358)
T ss_pred cceEEEecCCCCHHHHHHHHHcCCEEEEECccC-HHHc-CCHHHHHHHHHH-HHHHHHHhCCCeEEEcccCCCCCCcchH
Confidence 4678888864 7799999999999999865332 2222 344333344433 2223322345566554443322111223
Q ss_pred h-HHHHHHHHHHHHHhCCCC
Q 009301 197 F-LLPAMKNVHEALVKYNLH 215 (538)
Q Consensus 197 ~-L~~ai~nvk~aL~~~gl~ 215 (538)
. +..-|+++|++|++.+..
T Consensus 132 ~~~t~llkelr~~l~~~~~~ 151 (358)
T cd02875 132 YALTELVKETTKAFKKENPG 151 (358)
T ss_pred HHHHHHHHHHHHHHhhcCCC
Confidence 4 888999999999987543
No 27
>PLN03059 beta-galactosidase; Provisional
Probab=65.07 E-value=1.6e+02 Score=35.18 Aligned_cols=115 Identities=12% Similarity=0.029 Sum_probs=74.1
Q ss_pred HHHHHHHHhcCCCEEEEccC-----------C-------hHHHHHHhcCCCEEEEec---------------CCCchhh-
Q 009301 108 SKVVQLLKSQGIERVKVFDT-----------D-------AAVLKALSGSGIKVTVDL---------------PNELLFS- 153 (538)
Q Consensus 108 ~~vv~llk~~~i~~VRlY~~-----------d-------~~vL~A~a~sgI~V~lgv---------------~n~~~~~- 153 (538)
.+.++.+|..|++.|-+|-. | ...|+.+++.||+|++=+ |.-..+.
T Consensus 62 ~d~L~k~Ka~GlNtV~tYV~Wn~HEp~~G~~dF~G~~DL~~Fl~la~e~GLyvilRpGPYIcAEw~~GGlP~WL~~~~~i 141 (840)
T PLN03059 62 PDLIQKAKDGGLDVIQTYVFWNGHEPSPGNYYFEDRYDLVKFIKVVQAAGLYVHLRIGPYICAEWNFGGFPVWLKYVPGI 141 (840)
T ss_pred HHHHHHHHHcCCCeEEEEecccccCCCCCeeeccchHHHHHHHHHHHHcCCEEEecCCcceeeeecCCCCchhhhcCCCc
Confidence 35688889999999999954 1 256788899999999854 2111111
Q ss_pred -hh-CCh---hHHHHHHHHHhhhc------C-CCCeEEEEeecCccccCCCCChhh-HHHHHHHHHHHHHhCCCCCceeE
Q 009301 154 -AA-KRP---SFAFSWVQKNVAAY------H-PDTQIEAIGVGNEVFVDPHNTTKF-LLPAMKNVHEALVKYNLHSSIKV 220 (538)
Q Consensus 154 -~a-~~~---~aa~~Wv~~nv~~y------~-p~~~I~~I~VGNEvl~~~~~~~~~-L~~ai~nvk~aL~~~gl~~~I~V 220 (538)
+. .++ ++..+|+..-+... + ....|..+-|-||-=.-. ..... =..+|+.+++.+++.|+. ||.
T Consensus 142 ~~Rs~d~~fl~~v~~~~~~l~~~l~~~~l~~~~GGPIImvQIENEYGs~~-~~~~~~d~~Yl~~l~~~~~~~Gi~--VPl 218 (840)
T PLN03059 142 EFRTDNGPFKAAMQKFTEKIVDMMKSEKLFEPQGGPIILSQIENEYGPVE-WEIGAPGKAYTKWAADMAVKLGTG--VPW 218 (840)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHhhcceeecCCCcEEEEEeccccccee-cccCcchHHHHHHHHHHHHHcCCC--cce
Confidence 11 122 24556665443221 1 246799999999952210 01112 467999999999999986 788
Q ss_pred ecccc
Q 009301 221 SSPIA 225 (538)
Q Consensus 221 st~~~ 225 (538)
-|.+.
T Consensus 219 ~t~dg 223 (840)
T PLN03059 219 VMCKQ 223 (840)
T ss_pred EECCC
Confidence 77765
No 28
>PF00925 GTP_cyclohydro2: GTP cyclohydrolase II; InterPro: IPR000926 GTP cyclohydrolase II catalyses the first committed step in the biosynthesis of riboflavin. The enzyme converts GTP and water to formate, 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)- pyrimidine and pyrophosphate, and requires magnesium as a cofactor. It is sometimes found as a bifunctional enzyme with 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP_synthase) IPR000422 from INTERPRO. ; GO: 0003935 GTP cyclohydrolase II activity, 0009231 riboflavin biosynthetic process; PDB: 2BZ0_B 2BZ1_A.
Probab=64.05 E-value=8.2 Score=36.80 Aligned_cols=37 Identities=24% Similarity=0.573 Sum_probs=27.4
Q ss_pred HHHHHhcCCCEEEEccCChHHHHHHhcCCCEEEEecC
Q 009301 111 VQLLKSQGIERVKVFDTDAAVLKALSGSGIKVTVDLP 147 (538)
Q Consensus 111 v~llk~~~i~~VRlY~~d~~vL~A~a~sgI~V~lgv~ 147 (538)
.++|+.+|+++||+.+.+|.-+.++.+.||+|.=-|+
T Consensus 132 aqIL~dLGV~~~rLLtnnp~k~~~L~g~gleV~~~vp 168 (169)
T PF00925_consen 132 AQILRDLGVKKMRLLTNNPRKYVALEGFGLEVVERVP 168 (169)
T ss_dssp HHHHHHTT--SEEEE-S-HHHHHHHHHTT--EEEEE-
T ss_pred HHHHHHcCCCEEEECCCChhHHHHHhcCCCEEEEEec
Confidence 7899999999999999999999999999999975443
No 29
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=62.69 E-value=27 Score=38.75 Aligned_cols=43 Identities=9% Similarity=0.160 Sum_probs=34.6
Q ss_pred HHHHHHHHhcCCCEEEEccC-------------C-------hHHHHHHhcCCCEEEEecCCCch
Q 009301 108 SKVVQLLKSQGIERVKVFDT-------------D-------AAVLKALSGSGIKVTVDLPNELL 151 (538)
Q Consensus 108 ~~vv~llk~~~i~~VRlY~~-------------d-------~~vL~A~a~sgI~V~lgv~n~~~ 151 (538)
+++++|+|++|++.-|+ +. | .+++.++.+.||+-+|.+.--++
T Consensus 57 ~eDi~L~~~lG~~~yRf-SIsWsRI~P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL~H~dl 119 (469)
T PRK13511 57 PEDLKLAEEFGVNGIRI-SIAWSRIFPDGYGEVNPKGVEYYHRLFAECHKRHVEPFVTLHHFDT 119 (469)
T ss_pred HHHHHHHHHhCCCEEEe-eccHhhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEecCCCC
Confidence 68999999999888876 22 2 27899999999999999975443
No 30
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=62.03 E-value=1.3e+02 Score=28.51 Aligned_cols=100 Identities=13% Similarity=0.072 Sum_probs=57.3
Q ss_pred HHHHHHHHhcCCCEEEE----------ccCC--------------hHHHHHHhcCCCEEEEecCCCch-hhhhCChhH--
Q 009301 108 SKVVQLLKSQGIERVKV----------FDTD--------------AAVLKALSGSGIKVTVDLPNELL-FSAAKRPSF-- 160 (538)
Q Consensus 108 ~~vv~llk~~~i~~VRl----------Y~~d--------------~~vL~A~a~sgI~V~lgv~n~~~-~~~a~~~~a-- 160 (538)
++.++.+|+.||+.|=+ |.+. ..+|+++.+.||+|.+|+..+.. .. ..+.+.
T Consensus 23 ~~~~~~m~~~GidtlIlq~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~~~~~w~-~~~~~~~~ 101 (166)
T PF14488_consen 23 REEFRAMKAIGIDTLILQWTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLYFDPDYWD-QGDLDWEA 101 (166)
T ss_pred HHHHHHHHHcCCcEEEEEEeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCCCCchhhh-ccCHHHHH
Confidence 46788899999988833 2221 26789999999999999996521 12 122221
Q ss_pred --HHHHHHHHhhhcCCCCeEEEEeecCccccCCCCChhhHHHHHHHHHHHHHhC
Q 009301 161 --AFSWVQKNVAAYHPDTQIEAIGVGNEVFVDPHNTTKFLLPAMKNVHEALVKY 212 (538)
Q Consensus 161 --a~~Wv~~nv~~y~p~~~I~~I~VGNEvl~~~~~~~~~L~~ai~nvk~aL~~~ 212 (538)
...-..+-...|....-+.|-=+-.|+-... ....++.+.+.+.|++.
T Consensus 102 ~~~~~v~~el~~~yg~h~sf~GWYip~E~~~~~----~~~~~~~~~l~~~lk~~ 151 (166)
T PF14488_consen 102 ERNKQVADELWQRYGHHPSFYGWYIPYEIDDYN----WNAPERFALLGKYLKQI 151 (166)
T ss_pred HHHHHHHHHHHHHHcCCCCCceEEEecccCCcc----cchHHHHHHHHHHHHHh
Confidence 1121222223443334567777777764432 11455556666666543
No 31
>PRK00393 ribA GTP cyclohydrolase II; Reviewed
Probab=59.67 E-value=14 Score=36.16 Aligned_cols=36 Identities=22% Similarity=0.558 Sum_probs=32.3
Q ss_pred HHHHHhcCCCEEEEccCChHHHHHHhcCCCEEEEec
Q 009301 111 VQLLKSQGIERVKVFDTDAAVLKALSGSGIKVTVDL 146 (538)
Q Consensus 111 v~llk~~~i~~VRlY~~d~~vL~A~a~sgI~V~lgv 146 (538)
.++|+.+||++||+.+.++.-+.++.+.||+|.=-+
T Consensus 134 AQIL~dLGV~~mrLLtn~~~k~~~L~g~GleV~~~~ 169 (197)
T PRK00393 134 ADMLKALGVKKVRLLTNNPKKVEALTEAGINIVERV 169 (197)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEEEEe
Confidence 789999999999999999888899999999997333
No 32
>TIGR00505 ribA GTP cyclohydrolase II. Several members of the family are bifunctional, involving both ribA and ribB function. In these cases, ribA tends to be on the C-terminal end of the protein and ribB tends to be on the N-terminal. The function of archaeal members of the family has not been demonstrated and is assigned tentatively.
Probab=59.39 E-value=14 Score=35.87 Aligned_cols=34 Identities=18% Similarity=0.513 Sum_probs=31.4
Q ss_pred HHHHHhcCCCEEEEccCChHHHHHHhcCCCEEEE
Q 009301 111 VQLLKSQGIERVKVFDTDAAVLKALSGSGIKVTV 144 (538)
Q Consensus 111 v~llk~~~i~~VRlY~~d~~vL~A~a~sgI~V~l 144 (538)
.++|+.+|+++||+.+.++.-+.++.+.||+|.=
T Consensus 131 AQIL~dLGV~~~rLLtn~~~k~~~L~g~gleVv~ 164 (191)
T TIGR00505 131 ADILEDLGVKKVRLLTNNPKKIEILKKAGINIVE 164 (191)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEEE
Confidence 7899999999999999998888999999999973
No 33
>COG4782 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=53.86 E-value=47 Score=35.78 Aligned_cols=60 Identities=18% Similarity=0.300 Sum_probs=39.0
Q ss_pred ccchHHHHHHHHHHHHHhcCCCCccEEEeeeccCCCCCCC---CCCCCHHHHHHHHHHHHHHHHhC
Q 009301 302 YFSLFDAQIDAVFAALSALKYDDIRMVVTETGWPSKGDEN---ENGASVENAAAYNGNLVRRILTG 364 (538)
Q Consensus 302 Y~n~fda~~Dav~~a~~~~g~~~~~VvVsEtGWPS~G~~~---~~~as~~Na~~y~~~lv~~~~~~ 364 (538)
|.|-|++-+-....-....|+..++|++| |||.|.-- --..|....+.-.+++++.+...
T Consensus 125 fNntf~dav~R~aqI~~d~g~~~~pVvFS---WPS~g~l~~Yn~DreS~~~Sr~aLe~~lr~La~~ 187 (377)
T COG4782 125 FNNTFEDAVYRTAQIVHDSGNDGVPVVFS---WPSRGSLLGYNYDRESTNYSRPALERLLRYLATD 187 (377)
T ss_pred cCCchhHHHHHHHHHHhhcCCCcceEEEE---cCCCCeeeecccchhhhhhhHHHHHHHHHHHHhC
Confidence 55666654433333334457788999988 99998762 11356666777788888888764
No 34
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=53.82 E-value=1.3e+02 Score=32.64 Aligned_cols=58 Identities=17% Similarity=0.352 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHhCCCCCceeEecccccccccccCCCCCcccCccccchhhhhHHHHHhhcCCceeeccCCCcccCC
Q 009301 198 LLPAMKNVHEALVKYNLHSSIKVSSPIALSALQNSYPSSAGSFRPELIEPVFKPMLNFLRQTGSFLMVNAYPFFAYES 275 (538)
Q Consensus 198 L~~ai~nvk~aL~~~gl~~~I~Vst~~~~~~l~~s~pPS~g~F~~~~~~~~l~~~ldFL~~~~s~~~vNiyPyf~~~~ 275 (538)
++.+++.+|+.. .| |.|++..- -++| .+ .+..+.+.++|+.+.. +-.+++|+|--+-+
T Consensus 275 ~~~~v~~l~~~~--~g----i~i~~~~I-----vG~P-------gE-T~ed~~~tl~~i~~~~-~~~~~~~~~sp~pG 332 (414)
T TIGR01579 275 FLKLVNKLRSVR--PD----YAFGTDII-----VGFP-------GE-SEEDFQETLRMVKEIE-FSHLHIFPYSARPG 332 (414)
T ss_pred HHHHHHHHHHhC--CC----CeeeeeEE-----EECC-------CC-CHHHHHHHHHHHHhCC-CCEEEeeecCCCCC
Confidence 777777777632 23 45555421 1233 11 1235668899987754 45667777644433
No 35
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=52.41 E-value=1e+02 Score=33.41 Aligned_cols=106 Identities=15% Similarity=0.024 Sum_probs=62.0
Q ss_pred HHHHHHHHhcCCCEEEEccC----------Ch------------HHHHHHhcCCCEEEEecCCCc--------hh---hh
Q 009301 108 SKVVQLLKSQGIERVKVFDT----------DA------------AVLKALSGSGIKVTVDLPNEL--------LF---SA 154 (538)
Q Consensus 108 ~~vv~llk~~~i~~VRlY~~----------d~------------~vL~A~a~sgI~V~lgv~n~~--------~~---~~ 154 (538)
+++...+|+.|++.||+.-. +| ++++.+.+.||+|++.+-.-. .. ..
T Consensus 76 ~~~~~~ik~~G~n~VRiPi~~~~~~~~~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~H~~~~~~~~~~~s~~~~~~ 155 (407)
T COG2730 76 EEDFDQIKSAGFNAVRIPIGYWALQATDGDNPYLIGLTQLKILDEAINWAKKLGIYVLIDLHGYPGGNNGHEHSGYTSDY 155 (407)
T ss_pred hhHHHHHHHcCCcEEEcccchhhhhccCCCCCCeecchHHHHHHHHHHHHHhcCeeEEEEecccCCCCCCcCcccccccc
Confidence 67788999999999999743 22 457778899999999864311 11 11
Q ss_pred hCChhHHHHHH--HHHh-hhcCCCCeEEEEeecCccccCCCCChhh--HHHHHHHHHHHHHhCC
Q 009301 155 AKRPSFAFSWV--QKNV-AAYHPDTQIEAIGVGNEVFVDPHNTTKF--LLPAMKNVHEALVKYN 213 (538)
Q Consensus 155 a~~~~aa~~Wv--~~nv-~~y~p~~~I~~I~VGNEvl~~~~~~~~~--L~~ai~nvk~aL~~~g 213 (538)
..+.....+++ .+.| .+|-...+|.+|-+=||+..-.....+. +-+|..-|++.+...-
T Consensus 156 ~~~~~~~~~~~~~w~~ia~~f~~~~~VIg~~~~NEP~~~~~~~~w~~~~~~A~~~v~~~i~~~~ 219 (407)
T COG2730 156 KEENENVEATIDIWKFIANRFKNYDTVIGFELINEPNGIVTSETWNGGDDEAYDVVRNAILSNA 219 (407)
T ss_pred cccchhHHHHHHHHHHHHHhccCCCceeeeeeecCCcccCCccccccchHHHHHHHHhhhhhcC
Confidence 11000111111 1222 3343457788888889998511112333 4477777876665544
No 36
>cd00641 GTP_cyclohydro2 GTP cyclohydrolase II (RibA). GTP cyclohydrolase II catalyzes the conversion of GTP to 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5' phosphate, formate, pyrophosphate (APy), and GMP in the biosynthetic pathway of riboflavin. Riboflavin is the precursor molecule for the synthesis of the coenzymes flavin mononucleotide (FMN) and flavin adenine dinucleotide (FAD) which are essential to cell metabolism. The enzyme is present in plants and numerous pathogenic bacteria, especially gram negative organisms, who are dependent on endogenous synthesis of the vitamin because they lack an appropriate uptake system. For animals and humans, which lack this biosynthetic pathway, riboflavin is the essential vitamin B2. GTP cyclohydrolase II requires magnesium ions for activity and has a bound catalytic zinc. The functionally active form is thought to be a homodimer. A paralogous protein is encoded in the genome of Streptomyces coelicolor, which converts GTP to 2-amino-5-fo
Probab=49.98 E-value=25 Score=34.24 Aligned_cols=37 Identities=32% Similarity=0.637 Sum_probs=32.7
Q ss_pred HHHHHhcCCCEEEEccCChHHHHHHhcCCCEEEEecC
Q 009301 111 VQLLKSQGIERVKVFDTDAAVLKALSGSGIKVTVDLP 147 (538)
Q Consensus 111 v~llk~~~i~~VRlY~~d~~vL~A~a~sgI~V~lgv~ 147 (538)
.++|+.+|++.||+.+..+.-+.++.+.||+|.=-++
T Consensus 133 AQIL~dLGv~~mrLLs~~~~k~~~L~gfglevv~~~~ 169 (193)
T cd00641 133 AQILRDLGIKSVRLLTNNPDKIDALEGYGIEVVERVP 169 (193)
T ss_pred HHHHHHcCCCeEEECCCCHHHHHHHHhCCCEEEEEec
Confidence 7899999999999999988888999999999984443
No 37
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=49.86 E-value=43 Score=31.89 Aligned_cols=84 Identities=14% Similarity=0.229 Sum_probs=45.0
Q ss_pred HHHHHHhcC--CCEEEEecCCCchh---hhhCChhHHHHHHHHHhhhcCCCCeEEEEeecCccccCCCCChhh-HHHHHH
Q 009301 130 AVLKALSGS--GIKVTVDLPNELLF---SAAKRPSFAFSWVQKNVAAYHPDTQIEAIGVGNEVFVDPHNTTKF-LLPAMK 203 (538)
Q Consensus 130 ~vL~A~a~s--gI~V~lgv~n~~~~---~~a~~~~aa~~Wv~~nv~~y~p~~~I~~I~VGNEvl~~~~~~~~~-L~~ai~ 203 (538)
..++.+++. |++|++.|...... .++.+.+...+. .+++..+....++.||-+==|-....+..... ++..|+
T Consensus 53 ~~i~~l~~~~~g~kv~~sigg~~~~~~~~~~~~~~~~~~f-~~~~~~~v~~~~~DGidiD~E~~~~~~~~~~~~~~~ll~ 131 (210)
T cd00598 53 GALEELASKKPGLKVLISIGGWTDSSPFTLASDPASRAAF-ANSLVSFLKTYGFDGVDIDWEYPGAADNSDRENFITLLR 131 (210)
T ss_pred HHHHHHHHhCCCCEEEEEEcCCCCCCCchhhcCHHHHHHH-HHHHHHHHHHcCCCceEEeeeCCCCcCccHHHHHHHHHH
Confidence 345555554 99999988753221 233444433332 22333333334566666533433221111235 999999
Q ss_pred HHHHHHHhCCC
Q 009301 204 NVHEALVKYNL 214 (538)
Q Consensus 204 nvk~aL~~~gl 214 (538)
.+|++|.+.++
T Consensus 132 ~lr~~l~~~~~ 142 (210)
T cd00598 132 ELRSALGAANY 142 (210)
T ss_pred HHHHHhcccCc
Confidence 99999987654
No 38
>PRK12485 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=49.17 E-value=20 Score=38.59 Aligned_cols=33 Identities=18% Similarity=0.381 Sum_probs=30.4
Q ss_pred HHHHHhcCCCEEEEccCChHHHHHHhcCCCEEEE
Q 009301 111 VQLLKSQGIERVKVFDTDAAVLKALSGSGIKVTV 144 (538)
Q Consensus 111 v~llk~~~i~~VRlY~~d~~vL~A~a~sgI~V~l 144 (538)
.++||.+||++|||. .+|.-+.++.+.||+|.=
T Consensus 331 AqILr~LGV~kirLL-nNP~K~~~L~~~GIeV~~ 363 (369)
T PRK12485 331 AQILQDLGVGKLRHL-GPPLKYAGLTGYDLEVVE 363 (369)
T ss_pred HHHHHHcCCCEEEEC-CCchhhhhhhhCCcEEEE
Confidence 789999999999999 789999999999999973
No 39
>PRK14019 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=47.57 E-value=22 Score=38.25 Aligned_cols=35 Identities=23% Similarity=0.509 Sum_probs=31.6
Q ss_pred HHHHHhcCCCEEEEccCChHHHHHHhcCCCEEEEec
Q 009301 111 VQLLKSQGIERVKVFDTDAAVLKALSGSGIKVTVDL 146 (538)
Q Consensus 111 v~llk~~~i~~VRlY~~d~~vL~A~a~sgI~V~lgv 146 (538)
.++|+.+|+++||+.. +|.-+.++.+.||+|.==+
T Consensus 328 aqIL~~Lgv~~irLlT-np~K~~~L~~~Gi~V~~~~ 362 (367)
T PRK14019 328 AQILRDLGVGKMRLLS-SPRKFPSMSGFGLEVTGYV 362 (367)
T ss_pred HHHHHHcCCCeEEECC-CcHHHHhhhhCCcEEEEEe
Confidence 7899999999999999 8999999999999998433
No 40
>PRK09318 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=44.66 E-value=30 Score=37.52 Aligned_cols=37 Identities=38% Similarity=0.613 Sum_probs=33.7
Q ss_pred HHHHHhcCCCEEEEccCChHHHHHHhcCCCEEEEecC
Q 009301 111 VQLLKSQGIERVKVFDTDAAVLKALSGSGIKVTVDLP 147 (538)
Q Consensus 111 v~llk~~~i~~VRlY~~d~~vL~A~a~sgI~V~lgv~ 147 (538)
.++|+.+|+++||+.+.+|.-+.++.+.||+|.=-++
T Consensus 320 AqIL~dLGV~~irLLTNnp~K~~~L~~~GieV~~~vp 356 (387)
T PRK09318 320 FQILKALGIEKVRLLTNNPRKTKALEKYGIEVVETVP 356 (387)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEEEEec
Confidence 7899999999999999999999999999999985554
No 41
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=44.58 E-value=1e+02 Score=31.89 Aligned_cols=83 Identities=12% Similarity=0.151 Sum_probs=50.5
Q ss_pred ChHHHHHHhcCCCEEEEecCCCc--------hhhhhCChhHHHHHHHHHhhhcCCCCeEEEEeecCccccCCCCChhh-H
Q 009301 128 DAAVLKALSGSGIKVTVDLPNEL--------LFSAAKRPSFAFSWVQKNVAAYHPDTQIEAIGVGNEVFVDPHNTTKF-L 198 (538)
Q Consensus 128 d~~vL~A~a~sgI~V~lgv~n~~--------~~~~a~~~~aa~~Wv~~nv~~y~p~~~I~~I~VGNEvl~~~~~~~~~-L 198 (538)
++.+++++++.|++|++.|.+.+ ...+..++++-.+ +.+++..++....+.||.+-=|-+.. .... .
T Consensus 47 ~~~~~~~a~~~~~kv~~~i~~~~~~~~~~~~~~~~l~~~~~r~~-fi~~iv~~l~~~~~DGidiDwE~~~~---~d~~~~ 122 (313)
T cd02874 47 DERLIEAAKRRGVKPLLVITNLTNGNFDSELAHAVLSNPEARQR-LINNILALAKKYGYDGVNIDFENVPP---EDREAY 122 (313)
T ss_pred CHHHHHHHHHCCCeEEEEEecCCCCCCCHHHHHHHhcCHHHHHH-HHHHHHHHHHHhCCCcEEEecccCCH---HHHHHH
Confidence 35788888888999999886532 2334445432222 33334333322345666665555432 2234 8
Q ss_pred HHHHHHHHHHHHhCCC
Q 009301 199 LPAMKNVHEALVKYNL 214 (538)
Q Consensus 199 ~~ai~nvk~aL~~~gl 214 (538)
+.-|+.+|++|.+.|+
T Consensus 123 ~~fl~~lr~~l~~~~~ 138 (313)
T cd02874 123 TQFLRELSDRLHPAGY 138 (313)
T ss_pred HHHHHHHHHHhhhcCc
Confidence 8999999999987774
No 42
>PRK09314 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=44.38 E-value=29 Score=37.00 Aligned_cols=33 Identities=30% Similarity=0.535 Sum_probs=31.0
Q ss_pred HHHHHhcCCCEEEEccCC-hHHHHHHhcCCCEEE
Q 009301 111 VQLLKSQGIERVKVFDTD-AAVLKALSGSGIKVT 143 (538)
Q Consensus 111 v~llk~~~i~~VRlY~~d-~~vL~A~a~sgI~V~ 143 (538)
.++|+.+|+++||+...+ |.-+.++.+.||+|.
T Consensus 301 aqIL~dLGi~~irLlTnn~p~K~~~L~~~GieV~ 334 (339)
T PRK09314 301 AQILKYLGIKDIKLLSSSEDKEYVGLSGFGLNIV 334 (339)
T ss_pred HHHHHHCCCCEEEECCCCChhhhhhHhhCCcEEE
Confidence 789999999999999999 888999999999986
No 43
>PLN02831 Bifunctional GTP cyclohydrolase II/ 3,4-dihydroxy-2-butanone-4-phosphate synthase
Probab=44.38 E-value=30 Score=38.27 Aligned_cols=37 Identities=24% Similarity=0.542 Sum_probs=33.3
Q ss_pred HHHHHhcCCCEEEEccCChHHHHHHhcCCCEEEEecC
Q 009301 111 VQLLKSQGIERVKVFDTDAAVLKALSGSGIKVTVDLP 147 (538)
Q Consensus 111 v~llk~~~i~~VRlY~~d~~vL~A~a~sgI~V~lgv~ 147 (538)
.++|+.+||++||+.+.+|.-+.++.+.||+|.=-++
T Consensus 373 AqIL~dLGI~~irLLTNNp~K~~~L~~~GieVve~vp 409 (450)
T PLN02831 373 AQILRDLGVRTMRLMTNNPAKYTGLKGYGLAVVGRVP 409 (450)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHhhCCCEEEEEec
Confidence 7899999999999999999999999999999984443
No 44
>PRK09311 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=43.62 E-value=32 Score=37.53 Aligned_cols=37 Identities=24% Similarity=0.545 Sum_probs=33.2
Q ss_pred HHHHHhcCCCEEEEccCChHHHHHHhcCCCEEEEecC
Q 009301 111 VQLLKSQGIERVKVFDTDAAVLKALSGSGIKVTVDLP 147 (538)
Q Consensus 111 v~llk~~~i~~VRlY~~d~~vL~A~a~sgI~V~lgv~ 147 (538)
.++|+.+|+++||+.+.+|.-+.++.+.||+|.=-++
T Consensus 339 aqIL~~LGv~~irLLTnnp~K~~~L~~~GieV~~~v~ 375 (402)
T PRK09311 339 AQILVDLGVRSMRLLTNNPRKIAGLQGYGLHVTERVP 375 (402)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHhhCCCEEEEEec
Confidence 7899999999999999999999999999999984443
No 45
>PRK09319 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II/unknown domain fusion protein; Provisional
Probab=43.02 E-value=32 Score=38.92 Aligned_cols=37 Identities=27% Similarity=0.595 Sum_probs=33.8
Q ss_pred HHHHHhcCCCEEEEccCChHHHHHHhcCCCEEEEecC
Q 009301 111 VQLLKSQGIERVKVFDTDAAVLKALSGSGIKVTVDLP 147 (538)
Q Consensus 111 v~llk~~~i~~VRlY~~d~~vL~A~a~sgI~V~lgv~ 147 (538)
.++|+.+||++||+...+|.=+.++.+.||+|.=-++
T Consensus 343 AQIL~dLGI~kIrLLTNNP~Ki~~L~~~GIeVv~rvp 379 (555)
T PRK09319 343 AQILNDLGIKRLRLITNNPRKIAGLGGYGLEVVDRVP 379 (555)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEEEEec
Confidence 7899999999999999999999999999999985554
No 46
>PRK08815 GTP cyclohydrolase; Provisional
Probab=42.78 E-value=33 Score=37.05 Aligned_cols=37 Identities=27% Similarity=0.515 Sum_probs=33.4
Q ss_pred HHHHHhcCCCEEEEccCChHHHHHHhcCCCEEEEecC
Q 009301 111 VQLLKSQGIERVKVFDTDAAVLKALSGSGIKVTVDLP 147 (538)
Q Consensus 111 v~llk~~~i~~VRlY~~d~~vL~A~a~sgI~V~lgv~ 147 (538)
.++|+.+|+++||+.+.++.-+.++.+.||+|.=-++
T Consensus 305 AQIL~dLGV~kirLLTnnp~K~~~L~g~gieVv~~vp 341 (375)
T PRK08815 305 VAMLRGLGITRVRLLTNNPTKAERLRAAGIEVEDRIR 341 (375)
T ss_pred HHHHHHcCCCeEEECCCCHHHHHHHHhCCCEEEEEec
Confidence 7899999999999999999889999999999985444
No 47
>PF06117 DUF957: Enterobacterial protein of unknown function (DUF957); InterPro: IPR009301 This family consists of several hypothetical proteins from Escherichia coli, Salmonella typhi, Shigella flexneri and Proteus vulgaris. The function of this family is unknown.
Probab=42.32 E-value=40 Score=27.20 Aligned_cols=40 Identities=20% Similarity=0.513 Sum_probs=28.6
Q ss_pred HHHHHHHHHhhhcCCCCeEEEEeecCccccCCCC--Chhh-HHHHHHHHHHHHHh
Q 009301 160 FAFSWVQKNVAAYHPDTQIEAIGVGNEVFVDPHN--TTKF-LLPAMKNVHEALVK 211 (538)
Q Consensus 160 aa~~Wv~~nv~~y~p~~~I~~I~VGNEvl~~~~~--~~~~-L~~ai~nvk~aL~~ 211 (538)
-...|+++|| -.|+|.+++++. +... |+|+|...++.++.
T Consensus 12 iLi~WLedNi------------~~es~iiFDNded~tdSa~llp~ie~a~~~~r~ 54 (65)
T PF06117_consen 12 ILIAWLEDNI------------DCESDIIFDNDEDKTDSAALLPAIEQARADVRP 54 (65)
T ss_pred HHHHHHHccc------------CCCCCeeecCCCcccchHHHHHHHHHHHHHHHH
Confidence 4578998875 357777877532 2344 99999999888865
No 48
>PF13547 GTA_TIM: GTA TIM-barrel-like domain
Probab=41.77 E-value=16 Score=37.83 Aligned_cols=82 Identities=18% Similarity=0.304 Sum_probs=50.1
Q ss_pred CCeEEEEeecCcccc--CC---CCCh--hh-HHHHHHHHHHHHHhCCCCCceeEecccccccccccCCCCCc----ccCc
Q 009301 175 DTQIEAIGVGNEVFV--DP---HNTT--KF-LLPAMKNVHEALVKYNLHSSIKVSSPIALSALQNSYPSSAG----SFRP 242 (538)
Q Consensus 175 ~~~I~~I~VGNEvl~--~~---~~~~--~~-L~~ai~nvk~aL~~~gl~~~I~Vst~~~~~~l~~s~pPS~g----~F~~ 242 (538)
+..|..+++|+|-.- +. .... .. |+..+.+||+.| |- ..|||++-.|+++.. +.|..| .|+-
T Consensus 17 aggVdaF~IGSEl~gLT~iR~~~~~fPaV~~l~~LAa~VR~il---G~--~~kitYAADWsEY~~-~~p~dg~gd~~f~L 90 (299)
T PF13547_consen 17 AGGVDAFCIGSELRGLTRIRDGAGSFPAVEALRALAADVRAIL---GP--GTKITYAADWSEYFG-YQPADGSGDVYFHL 90 (299)
T ss_pred cCCCcEEEEchhhhhheeecCCCCCCcHHHHHHHHHHHHHHHh---CC--CceEEEeccCHHhcC-cCCCCCCCcccccC
Confidence 467899999999653 21 1122 34 777777777766 43 379999999999875 444433 3332
Q ss_pred cccchhh-hhHHHHHhhcCCceeeccCCCcc
Q 009301 243 ELIEPVF-KPMLNFLRQTGSFLMVNAYPFFA 272 (538)
Q Consensus 243 ~~~~~~l-~~~ldFL~~~~s~~~vNiyPyf~ 272 (538)
| ++- .+.+ |+++|+.|.=.+
T Consensus 91 D---pLWa~~~I-------DfIGID~Y~PLS 111 (299)
T PF13547_consen 91 D---PLWADPNI-------DFIGIDNYFPLS 111 (299)
T ss_pred c---ccccCCcC-------CEEEeecccccC
Confidence 2 111 1334 449998876443
No 49
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=41.16 E-value=2.3e+02 Score=29.71 Aligned_cols=104 Identities=16% Similarity=0.160 Sum_probs=63.1
Q ss_pred HHHHHHHHhcCCCEEEEccC-----------C-------hHHHHHHhcCCCEEEEec--CCC------chh---------
Q 009301 108 SKVVQLLKSQGIERVKVFDT-----------D-------AAVLKALSGSGIKVTVDL--PNE------LLF--------- 152 (538)
Q Consensus 108 ~~vv~llk~~~i~~VRlY~~-----------d-------~~vL~A~a~sgI~V~lgv--~n~------~~~--------- 152 (538)
.++++.+|+.|++.|-+|-. | ...|+.+++.||.|+|=. +.. .++
T Consensus 27 ~~~l~k~ka~G~n~v~~yv~W~~he~~~g~~df~g~~dl~~f~~~a~~~gl~vilrpGpyi~aE~~~gG~P~Wl~~~~~~ 106 (319)
T PF01301_consen 27 RDRLQKMKAAGLNTVSTYVPWNLHEPEEGQFDFTGNRDLDRFLDLAQENGLYVILRPGPYICAEWDNGGLPAWLLRKPDI 106 (319)
T ss_dssp HHHHHHHHHTT-SEEEEE--HHHHSSBTTB---SGGG-HHHHHHHHHHTT-EEEEEEES---TTBGGGG--GGGGGSTTS
T ss_pred HHHHHHHHhCCcceEEEeccccccCCCCCcccccchhhHHHHHHHHHHcCcEEEecccceecccccchhhhhhhhccccc
Confidence 56789999999999999954 1 257888999999999843 211 110
Q ss_pred hhh-CCh---hHHHHHHHHH---hhhcC--CCCeEEEEeecCccccCCCCChhhHHHHHHHHHHHHHhCCCCC
Q 009301 153 SAA-KRP---SFAFSWVQKN---VAAYH--PDTQIEAIGVGNEVFVDPHNTTKFLLPAMKNVHEALVKYNLHS 216 (538)
Q Consensus 153 ~~a-~~~---~aa~~Wv~~n---v~~y~--p~~~I~~I~VGNEvl~~~~~~~~~L~~ai~nvk~aL~~~gl~~ 216 (538)
.+. .++ ++..+|.+.. +.++. ....|..+-|-||.-... .-..+|+.+++..++.+...
T Consensus 107 ~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~GGpII~vQvENEyg~~~-----~~~~Y~~~l~~~~~~~g~~~ 174 (319)
T PF01301_consen 107 RLRTNDPPFLEAVERWYRALAKIIKPLQYTNGGPIIMVQVENEYGSYG-----TDRAYMEALKDAYRDWGIDP 174 (319)
T ss_dssp -SSSS-HHHHHHHHHHHHHHHHHHGGGBGGGTSSEEEEEESSSGGCTS-----S-HHHHHHHHHHHHHTT-SS
T ss_pred cccccchhHHHHHHHHHHHHHHHHHhhhhcCCCceehhhhhhhhCCCc-----ccHhHHHHHHHHHHHhhCcc
Confidence 011 111 2455665432 33332 135799999999976322 14568889999999998764
No 50
>PF13547 GTA_TIM: GTA TIM-barrel-like domain
Probab=40.67 E-value=28 Score=36.12 Aligned_cols=41 Identities=15% Similarity=0.053 Sum_probs=26.5
Q ss_pred CCccEEEeeeccCCCCC-CCCC----C-C--------------CHHHHHHHHHHHHHHHHh
Q 009301 323 DDIRMVVTETGWPSKGD-ENEN----G-A--------------SVENAAAYNGNLVRRILT 363 (538)
Q Consensus 323 ~~~~VvVsEtGWPS~G~-~~~~----~-a--------------s~~Na~~y~~~lv~~~~~ 363 (538)
..|||+++|.|||+-.. .|++ . - .---|++|.+.++.+...
T Consensus 205 ~sKpIwftE~GcpavDkgtNqPNvF~DpkSsEs~~P~~S~g~rDd~~Qr~~lea~~~~w~~ 265 (299)
T PF13547_consen 205 QSKPIWFTEYGCPAVDKGTNQPNVFLDPKSSESALPYFSNGARDDLIQRRYLEATLGYWDD 265 (299)
T ss_pred CCcceEEEecCCchhcCcCCCCccccCcccccccCCCCCCCCccHHHHHHHHHHHHHHhcC
Confidence 47999999999998332 2221 0 1 122378888887776654
No 51
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=40.24 E-value=58 Score=29.61 Aligned_cols=40 Identities=28% Similarity=0.405 Sum_probs=37.4
Q ss_pred HHHHHHHHhcCCCEEEEccCChHHHHHHhcCCCEEEEecC
Q 009301 108 SKVVQLLKSQGIERVKVFDTDAAVLKALSGSGIKVTVDLP 147 (538)
Q Consensus 108 ~~vv~llk~~~i~~VRlY~~d~~vL~A~a~sgI~V~lgv~ 147 (538)
.++.++|+..|++.|=+...-+..+++|++.||+|+.+-.
T Consensus 55 ~~~a~~l~~~gvdvvi~~~iG~~a~~~l~~~GIkv~~~~~ 94 (121)
T COG1433 55 IRIAELLVDEGVDVVIASNIGPNAYNALKAAGIKVYVAPG 94 (121)
T ss_pred HHHHHHHHHcCCCEEEECccCHHHHHHHHHcCcEEEecCC
Confidence 4689999999999999999999999999999999999977
No 52
>COG4213 XylF ABC-type xylose transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=39.68 E-value=70 Score=33.83 Aligned_cols=75 Identities=31% Similarity=0.235 Sum_probs=51.1
Q ss_pred HHHHHHhcCC-CEEEEec-CCCchhhhhCChhHHHHHHHHHhhhcCCCCeEEEEeecCccccCCCCChhhHHHHHHHHHH
Q 009301 130 AVLKALSGSG-IKVTVDL-PNELLFSAAKRPSFAFSWVQKNVAAYHPDTQIEAIGVGNEVFVDPHNTTKFLLPAMKNVHE 207 (538)
Q Consensus 130 ~vL~A~a~sg-I~V~lgv-~n~~~~~~a~~~~aa~~Wv~~nv~~y~p~~~I~~I~VGNEvl~~~~~~~~~L~~ai~nvk~ 207 (538)
+||+++-++| |++ +|= |.+ .-.++.|.+|....+.++ .+.|.+|+.-|.-+..+ +-+
T Consensus 176 ~VLkp~idsGkik~-~Ge~~~d-----~W~ps~Aq~~men~lta~--~~~vdaVvA~nDgtagG-------------aI~ 234 (341)
T COG4213 176 KVLKPLIDSGKIKV-VGEQWTD-----GWLPSNAQQIMENLLTAN--YNDIDAVVAPNDGTAGG-------------AIA 234 (341)
T ss_pred HHHHHHhhCCceEE-eeecccc-----ccCHHHHHHHHHHHHhcc--cCceeEEEcCCCchhHH-------------HHH
Confidence 7899888888 555 653 332 346677888888888776 35699988877533221 235
Q ss_pred HHHhCCCCCceeEecccc
Q 009301 208 ALVKYNLHSSIKVSSPIA 225 (538)
Q Consensus 208 aL~~~gl~~~I~Vst~~~ 225 (538)
+|+..||.+++|||=-++
T Consensus 235 aL~a~Gl~g~vpVsGQDA 252 (341)
T COG4213 235 ALKAQGLAGKVPVSGQDA 252 (341)
T ss_pred HHHhcccCCCCcccCccc
Confidence 677889998899765443
No 53
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=38.51 E-value=1e+02 Score=24.11 Aligned_cols=44 Identities=25% Similarity=0.360 Sum_probs=34.3
Q ss_pred CCHHHHHHHHHhcCCCEEEEccCC-----hHHHHHHhcCCCEEEEecCC
Q 009301 105 PSASKVVQLLKSQGIERVKVFDTD-----AAVLKALSGSGIKVTVDLPN 148 (538)
Q Consensus 105 p~~~~vv~llk~~~i~~VRlY~~d-----~~vL~A~a~sgI~V~lgv~n 148 (538)
-++++.++..++.|++.|=+=|-+ ....+.+++.||+|+.|+..
T Consensus 15 ~~~~~~~~~a~~~g~~~v~iTDh~~~~~~~~~~~~~~~~gi~~i~G~E~ 63 (67)
T smart00481 15 LSPEELVKRAKELGLKAIAITDHGNLFGAVEFYKAAKKAGIKPIIGLEA 63 (67)
T ss_pred CCHHHHHHHHHHcCCCEEEEeeCCcccCHHHHHHHHHHcCCeEEEEEEE
Confidence 457889999999999888776655 35566677899999999853
No 54
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=37.30 E-value=1e+02 Score=34.27 Aligned_cols=43 Identities=9% Similarity=0.148 Sum_probs=33.8
Q ss_pred HHHHHHHHhcCCCEEEEccC-------------C-------hHHHHHHhcCCCEEEEecCCCch
Q 009301 108 SKVVQLLKSQGIERVKVFDT-------------D-------AAVLKALSGSGIKVTVDLPNELL 151 (538)
Q Consensus 108 ~~vv~llk~~~i~~VRlY~~-------------d-------~~vL~A~a~sgI~V~lgv~n~~~ 151 (538)
+++++|++++|++.-|+ +. | .+++.++.+.||+-+|.+.-=++
T Consensus 56 ~eDi~L~~~lG~~~yRf-SIsWsRI~P~g~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL~H~dl 118 (467)
T TIGR01233 56 PVDLELAEEYGVNGIRI-SIAWSRIFPTGYGEVNEKGVEFYHKLFAECHKRHVEPFVTLHHFDT 118 (467)
T ss_pred HHHHHHHHHcCCCEEEE-ecchhhccCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEeccCCCC
Confidence 68899999999888775 22 2 16889999999999999975443
No 55
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=35.79 E-value=72 Score=35.56 Aligned_cols=44 Identities=16% Similarity=0.295 Sum_probs=34.3
Q ss_pred HHHHHHHHhcCCCEEEE-------cc------CCh-------HHHHHHhcCCCEEEEecCCCch
Q 009301 108 SKVVQLLKSQGIERVKV-------FD------TDA-------AVLKALSGSGIKVTVDLPNELL 151 (538)
Q Consensus 108 ~~vv~llk~~~i~~VRl-------Y~------~d~-------~vL~A~a~sgI~V~lgv~n~~~ 151 (538)
+++++++|++|++.-|+ += .|+ +++.++.+.||+-+|.+.--++
T Consensus 70 ~eDi~Lm~~lG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL~H~dl 133 (476)
T PRK09589 70 KEDIALFAEMGFKCFRTSIAWTRIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPVVTLSHFEM 133 (476)
T ss_pred HHHHHHHHHcCCCEEEeccchhhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCC
Confidence 68999999999888875 21 132 6899999999999999975443
No 56
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=35.76 E-value=61 Score=34.00 Aligned_cols=220 Identities=18% Similarity=0.172 Sum_probs=109.9
Q ss_pred HHHHHHhcCCCEEE--EecCCCchhh-hhC----C-------hhHHHHHHHHHhhhcCCC-CeEEEEeecCccccCCC--
Q 009301 130 AVLKALSGSGIKVT--VDLPNELLFS-AAK----R-------PSFAFSWVQKNVAAYHPD-TQIEAIGVGNEVFVDPH-- 192 (538)
Q Consensus 130 ~vL~A~a~sgI~V~--lgv~n~~~~~-~a~----~-------~~aa~~Wv~~nv~~y~p~-~~I~~I~VGNEvl~~~~-- 192 (538)
.+++-+...||+|- .-||-...+. +.. + .+...++|++.+..| .. .+|...=|=||++....
T Consensus 63 ~~~~~a~~~g~~vrGH~LvW~~~~P~w~~~~~~~~~~~~~~~~~~l~~~I~~v~~~y-~~~g~i~~WDVvNE~i~~~~~~ 141 (320)
T PF00331_consen 63 AILDWARENGIKVRGHTLVWHSQTPDWVFNLANGSPDEKEELRARLENHIKTVVTRY-KDKGRIYAWDVVNEAIDDDGNP 141 (320)
T ss_dssp HHHHHHHHTT-EEEEEEEEESSSS-HHHHTSTTSSBHHHHHHHHHHHHHHHHHHHHT-TTTTTESEEEEEES-B-TTSSS
T ss_pred HHHHHHHhcCcceeeeeEEEcccccceeeeccCCCcccHHHHHHHHHHHHHHHHhHh-ccccceEEEEEeeecccCCCcc
Confidence 56777778888876 4556543221 111 2 223456777666666 33 48999989999998742
Q ss_pred ----CCh------hh-HHHHHHHHHHHHHhCCCCCceeEecccccccccccCCCCCcccCccccchhhhhHHHHHhhcCC
Q 009301 193 ----NTT------KF-LLPAMKNVHEALVKYNLHSSIKVSSPIALSALQNSYPSSAGSFRPELIEPVFKPMLNFLRQTGS 261 (538)
Q Consensus 193 ----~~~------~~-L~~ai~nvk~aL~~~gl~~~I~Vst~~~~~~l~~s~pPS~g~F~~~~~~~~l~~~ldFL~~~~s 261 (538)
.+. .. +..+.+-.|++..+ ++.-.-+ .+++. +.-. .-+..++..|.+.+-
T Consensus 142 ~~~r~~~~~~~lG~~yi~~aF~~A~~~~P~------a~L~~ND-y~~~~-----------~~k~-~~~~~lv~~l~~~gv 202 (320)
T PF00331_consen 142 GGLRDSPWYDALGPDYIADAFRAAREADPN------AKLFYND-YNIES-----------PAKR-DAYLNLVKDLKARGV 202 (320)
T ss_dssp SSBCTSHHHHHHTTCHHHHHHHHHHHHHTT------SEEEEEE-SSTTS-----------THHH-HHHHHHHHHHHHTTH
T ss_pred ccccCChhhhcccHhHHHHHHHHHHHhCCC------cEEEecc-ccccc-----------hHHH-HHHHHHHHHHHhCCC
Confidence 111 23 55677777776653 3333322 11111 0001 123467777665543
Q ss_pred ceeeccCCCcccCCCCCccccccccccCCCceeeCCCCccccchHHHHHHHHHHHHHhcCCCCccEEEeeeccCCCCCCC
Q 009301 262 FLMVNAYPFFAYESNTDVISLDYALFRENPGVVDAGNGLRYFSLFDAQIDAVFAALSALKYDDIRMVVTETGWPSKGDEN 341 (538)
Q Consensus 262 ~~~vNiyPyf~~~~~p~~i~ldyAlF~~~~g~~d~~t~~~Y~n~fda~~Dav~~a~~~~g~~~~~VvVsEtGWPS~G~~~ 341 (538)
|+ |--=+| +....+ +. .+.+..+|+++.--+++|.|||.-=.......
T Consensus 203 pI-------------------dgIG~Q---~H~~~~----~~------~~~i~~~l~~~~~~Gl~i~ITElDv~~~~~~~ 250 (320)
T PF00331_consen 203 PI-------------------DGIGLQ---SHFDAG----YP------PEQIWNALDRFASLGLPIHITELDVRDDDNPP 250 (320)
T ss_dssp CS--------------------EEEEE---EEEETT----SS------HHHHHHHHHHHHTTTSEEEEEEEEEESSSTTS
T ss_pred cc-------------------ceechh---hccCCC----CC------HHHHHHHHHHHHHcCCceEEEeeeecCCCCCc
Confidence 32 111111 111111 01 23344444554445799999997644332211
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhCCCCCCCCCCCccEEEEE-eecC-CCCCCCCCCCccccccCCCceeee
Q 009301 342 ENGASVENAAAYNGNLVRRILTGGGTPLRPKADLTVYLFA-LFNE-DQKPGPTSERNYGLFYPNEEKVYN 409 (538)
Q Consensus 342 ~~~as~~Na~~y~~~lv~~~~~~~GTP~rpg~~~~~yiF~-lFdE-~~K~G~~~E~~wGLf~~dg~pky~ 409 (538)
. ....+.++.+++.+++.+.+. | +. .+..+.+- +.|. .|.+... ..+=+||+.|.+||-.
T Consensus 251 ~-~~~~~~qA~~~~~~~~~~~~~---~--~~-~v~git~Wg~~D~~sW~~~~~-~~~~~lfd~~~~~Kpa 312 (320)
T PF00331_consen 251 D-AEEEEAQAEYYRDFLTACFSH---P--PA-AVEGITWWGFTDGYSWRPDTP-PDRPLLFDEDYQPKPA 312 (320)
T ss_dssp C-HHHHHHHHHHHHHHHHHHHHT---T--HC-TEEEEEESSSBTTGSTTGGHS-EG--SSB-TTSBB-HH
T ss_pred c-hHHHHHHHHHHHHHHHHHHhC---C--cc-CCCEEEEECCCCCCcccCCCC-CCCCeeECCCcCCCHH
Confidence 1 234667888999999998873 1 01 35555555 4443 2544311 1224789999988843
No 57
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=35.62 E-value=1.3e+02 Score=35.78 Aligned_cols=99 Identities=16% Similarity=0.082 Sum_probs=59.8
Q ss_pred ceeEEecCCCCCC---CC---HHHHHHHHHhcCCCEEEEccC--ChHHHHHHhcCCCEEEEecCCCc--hhhhhCChhHH
Q 009301 92 SIGVNYGRIANNL---PS---ASKVVQLLKSQGIERVKVFDT--DAAVLKALSGSGIKVTVDLPNEL--LFSAAKRPSFA 161 (538)
Q Consensus 92 ~~GvnYg~~~~n~---p~---~~~vv~llk~~~i~~VRlY~~--d~~vL~A~a~sgI~V~lgv~n~~--~~~~a~~~~aa 161 (538)
..|+|.-....-+ -. -.++++++|+.|++.||+... ++.-++.+...||.|+--..... ...--.-.+.+
T Consensus 302 ~kGvnrHe~~~~~G~~~~~~~~~~dl~lmk~~n~N~vRtsHyP~~~~~ydLcDelGllV~~Ea~~~~~~~~~~~~~~k~~ 381 (808)
T COG3250 302 IRGVNRHEDDPILGRVTDEDAMERDLKLMKEANMNSVRTSHYPNSEEFYDLCDELGLLVIDEAMIETHGMPDDPEWRKEV 381 (808)
T ss_pred EeeeecccCCCccccccCHHHHHHHHHHHHHcCCCEEEecCCCCCHHHHHHHHHhCcEEEEecchhhcCCCCCcchhHHH
Confidence 4688876643321 11 256788999999999999854 35788888899999998765421 11000011222
Q ss_pred HHHHHHHhhhcCCCCeEEEEeecCccccC
Q 009301 162 FSWVQKNVAAYHPDTQIEAIGVGNEVFVD 190 (538)
Q Consensus 162 ~~Wv~~nv~~y~p~~~I~~I~VGNEvl~~ 190 (538)
..=+++.|.+.--.-.|.--++|||.-..
T Consensus 382 ~~~i~~mver~knHPSIiiWs~gNE~~~g 410 (808)
T COG3250 382 SEEVRRMVERDRNHPSIIIWSLGNESGHG 410 (808)
T ss_pred HHHHHHHHHhccCCCcEEEEeccccccCc
Confidence 22244444332112357778999997553
No 58
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=34.43 E-value=1.1e+02 Score=25.47 Aligned_cols=51 Identities=16% Similarity=0.003 Sum_probs=31.7
Q ss_pred cCCCCeEEEEeecCc-cccCC-------CCChhh-HHHHHHHHHHHHHhCCCCCceeEeccc
Q 009301 172 YHPDTQIEAIGVGNE-VFVDP-------HNTTKF-LLPAMKNVHEALVKYNLHSSIKVSSPI 224 (538)
Q Consensus 172 y~p~~~I~~I~VGNE-vl~~~-------~~~~~~-L~~ai~nvk~aL~~~gl~~~I~Vst~~ 224 (538)
|--..+|.+--|+|| +.... .....+ +.+.|+++-+++++..=. +|||+..
T Consensus 5 ~~~~~~Il~Wdl~NE~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~iR~~dP~--~pvt~g~ 64 (88)
T PF12876_consen 5 FGYDPRILAWDLWNEPPNNWADGYPAEWGDPKAEAYAEWLKEAFRWIRAVDPS--QPVTSGF 64 (88)
T ss_dssp TT-GGGEEEEESSTTTT-TT-TT-TT-TT-TTSHHHHHHHHHHHHHHHTT-TT--S-EE--B
T ss_pred hcCCCCEEEEEeecCCCCcccccccccccchhHHHHHHHHHHHHHHHHHhCCC--CcEEeec
Confidence 333578999999999 55211 111245 899999999999987753 7887763
No 59
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=33.98 E-value=1.3e+02 Score=30.22 Aligned_cols=80 Identities=20% Similarity=0.152 Sum_probs=44.6
Q ss_pred HHHHHHhcCCCEEEEecCCCch---hhhhCChhHHHHHHHHHhhhcCCCCeEEEEeecCccccCCCCChhh-HHHHHHHH
Q 009301 130 AVLKALSGSGIKVTVDLPNELL---FSAAKRPSFAFSWVQKNVAAYHPDTQIEAIGVGNEVFVDPHNTTKF-LLPAMKNV 205 (538)
Q Consensus 130 ~vL~A~a~sgI~V~lgv~n~~~---~~~a~~~~aa~~Wv~~nv~~y~p~~~I~~I~VGNEvl~~~~~~~~~-L~~ai~nv 205 (538)
..+++++..|++|++.|..... ..+..++++..++++ ++..++....+.||-+==|-... . .. ...-|+++
T Consensus 50 ~~~~~~~~~~~kvl~sigg~~~~~~~~~~~~~~~r~~fi~-~lv~~~~~~~~DGIdiDwE~~~~---~-~~~~~~fv~~L 124 (253)
T cd06545 50 SVVNAAHAHNVKILISLAGGSPPEFTAALNDPAKRKALVD-KIINYVVSYNLDGIDVDLEGPDV---T-FGDYLVFIRAL 124 (253)
T ss_pred HHHHHHHhCCCEEEEEEcCCCCCcchhhhcCHHHHHHHHH-HHHHHHHHhCCCceeEEeeccCc---c-HhHHHHHHHHH
Confidence 3456777789999988865321 223345443334333 33333222345555553343221 1 24 77789999
Q ss_pred HHHHHhCCC
Q 009301 206 HEALVKYNL 214 (538)
Q Consensus 206 k~aL~~~gl 214 (538)
|++|.+.|+
T Consensus 125 r~~l~~~~~ 133 (253)
T cd06545 125 YAALKKEGK 133 (253)
T ss_pred HHHHhhcCc
Confidence 999987764
No 60
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=32.21 E-value=81 Score=35.51 Aligned_cols=85 Identities=15% Similarity=0.312 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHhcCCCCccEEEeeeccCCCCCCC--CC-----CCCHHHHHHHHHHHHHHHHhCCCCCCCCCCCc-cEEE
Q 009301 308 AQIDAVFAALSALKYDDIRMVVTETGWPSKGDEN--EN-----GASVENAAAYNGNLVRRILTGGGTPLRPKADL-TVYL 379 (538)
Q Consensus 308 a~~Dav~~a~~~~g~~~~~VvVsEtGWPS~G~~~--~~-----~as~~Na~~y~~~lv~~~~~~~GTP~rpg~~~-~~yi 379 (538)
-+-+.+..+=+ .|.+.+|+|+|-|.....+.. .. ..=++..+.|.+.+.+.+... | ..+ -+|+
T Consensus 393 Glr~~L~yiK~--~Y~np~iyItENG~~d~~~~~~~~~~~l~D~~Ri~Y~~~~L~~~~kAi~~d-g------vnv~GYf~ 463 (524)
T KOG0626|consen 393 GLRKLLNYIKD--KYGNPPIYITENGFDDLDGGTKSLEVALKDTKRIEYLQNHLQAVLKAIKED-G------VNVKGYFV 463 (524)
T ss_pred HHHHHHHHHHh--hcCCCcEEEEeCCCCcccccccchhhhhcchHHHHHHHHHHHHHHHHHHhc-C------CceeeEEE
Confidence 33344444322 378999999999998754331 11 133445666667766666532 2 223 3567
Q ss_pred EEeecC-CCCCCCCCCCccccccCC
Q 009301 380 FALFNE-DQKPGPTSERNYGLFYPN 403 (538)
Q Consensus 380 F~lFdE-~~K~G~~~E~~wGLf~~d 403 (538)
.++-|- .|..| ..-.|||++.|
T Consensus 464 WSLmDnfEw~~G--y~~RFGlyyVD 486 (524)
T KOG0626|consen 464 WSLLDNFEWLDG--YKVRFGLYYVD 486 (524)
T ss_pred eEcccchhhhcC--cccccccEEEe
Confidence 777763 45555 44669999864
No 61
>PRK07198 hypothetical protein; Validated
Probab=32.08 E-value=40 Score=36.61 Aligned_cols=38 Identities=29% Similarity=0.494 Sum_probs=34.2
Q ss_pred HHHHHhcCCCEE-EEccCChHHHHHHhcCCCEEEEecCC
Q 009301 111 VQLLKSQGIERV-KVFDTDAAVLKALSGSGIKVTVDLPN 148 (538)
Q Consensus 111 v~llk~~~i~~V-RlY~~d~~vL~A~a~sgI~V~lgv~n 148 (538)
.++|+.+||++| |+.+.++.-+.++.+.||+|.==|+.
T Consensus 338 AQILrdLGV~Km~RLLTNnp~K~~gL~GfGLEVVErVpl 376 (418)
T PRK07198 338 PDVLHWLGIRRIHRLVSMSNMKYDAITGSGIEVGERVPI 376 (418)
T ss_pred HHHHHHhCCChhhhhcCCCHHHHHHHHhCCCEEEEEecc
Confidence 689999999999 99999998999999999999866653
No 62
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=32.08 E-value=1.6e+02 Score=32.75 Aligned_cols=44 Identities=18% Similarity=0.277 Sum_probs=34.0
Q ss_pred HHHHHHHHhcCCCEEEE-------cc------CCh-------HHHHHHhcCCCEEEEecCCCch
Q 009301 108 SKVVQLLKSQGIERVKV-------FD------TDA-------AVLKALSGSGIKVTVDLPNELL 151 (538)
Q Consensus 108 ~~vv~llk~~~i~~VRl-------Y~------~d~-------~vL~A~a~sgI~V~lgv~n~~~ 151 (538)
++++++++++|++..|+ +- .|. +++.++.+.||+.+|.+.--++
T Consensus 74 ~eDi~l~~~lG~~~yR~si~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL~H~~~ 137 (474)
T PRK09852 74 KEDIALMAEMGFKVFRTSIAWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLVTLCHFDV 137 (474)
T ss_pred HHHHHHHHHcCCCeEEeeceeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCC
Confidence 68999999999888775 21 132 6889999999999999865443
No 63
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=31.87 E-value=7.8e+02 Score=27.68 Aligned_cols=86 Identities=21% Similarity=0.056 Sum_probs=47.6
Q ss_pred cCCCEEEEecCCCc--------h---hhhhC---C--hhHHHHHHHHHhhhcCC-CCeEEEEeecCccccC------CCC
Q 009301 137 GSGIKVTVDLPNEL--------L---FSAAK---R--PSFAFSWVQKNVAAYHP-DTQIEAIGVGNEVFVD------PHN 193 (538)
Q Consensus 137 ~sgI~V~lgv~n~~--------~---~~~a~---~--~~aa~~Wv~~nv~~y~p-~~~I~~I~VGNEvl~~------~~~ 193 (538)
+.+|+|+..-|-.- . ..+.. + .++-...+.+-|+.|-. +..|-+|.+.||+... ...
T Consensus 166 ~~~lki~aSpWSpP~WMKtn~~~~g~g~l~g~~~~~y~~~yA~Y~vkfi~aY~~~GI~i~aiT~QNEP~~~~~~~~~~~s 245 (496)
T PF02055_consen 166 NPNLKIFASPWSPPAWMKTNGSMNGGGSLKGSLGDEYYQAYADYFVKFIQAYKKEGIPIWAITPQNEPDNGSDPNYPWPS 245 (496)
T ss_dssp HTT-EEEEEES---GGGBTTSSSCSS-BBSCGTTSHHHHHHHHHHHHHHHHHHCTT--ESEEESSSSCCGGGSTT-SSC-
T ss_pred CCCcEEEEecCCCCHHHccCCcCcCCCccCCCCCchhHHHHHHHHHHHHHHHHHCCCCeEEEeccCCCCCCCCCCCCCCc
Confidence 45699999998531 1 11111 1 01223445556666632 4789999999999863 111
Q ss_pred C--hhh-HHHHHHH-HHHHHHhCCCCCceeEec
Q 009301 194 T--TKF-LLPAMKN-VHEALVKYNLHSSIKVSS 222 (538)
Q Consensus 194 ~--~~~-L~~ai~n-vk~aL~~~gl~~~I~Vst 222 (538)
. .++ ...-|++ +.-+|++.|+...+||=.
T Consensus 246 ~~~t~~~~~~Fi~~~LgP~l~~~~~g~d~kI~~ 278 (496)
T PF02055_consen 246 MGWTPEEQADFIKNYLGPALRKAGLGKDVKILI 278 (496)
T ss_dssp -B--HHHHHHHHHHTHHHHHHTSTT-TTSEEEE
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEE
Confidence 1 244 6677776 888999999844477643
No 64
>PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like.
Probab=31.09 E-value=1.3e+02 Score=30.08 Aligned_cols=43 Identities=16% Similarity=0.356 Sum_probs=25.4
Q ss_pred HhcCCCCccEEEeeeccCCCCCCCC---CCCCHHHHHHHHHHHHHHHHh
Q 009301 318 SALKYDDIRMVVTETGWPSKGDENE---NGASVENAAAYNGNLVRRILT 363 (538)
Q Consensus 318 ~~~g~~~~~VvVsEtGWPS~G~~~~---~~as~~Na~~y~~~lv~~~~~ 363 (538)
..+++++++|++ .|||.|...+ ...+....+..+..+++.+..
T Consensus 43 ~~~~~~~~~i~F---sWPS~g~~~~Y~~d~~~a~~s~~~l~~~L~~L~~ 88 (233)
T PF05990_consen 43 HDLGFPGVVILF---SWPSDGSLLGYFYDRESARFSGPALARFLRDLAR 88 (233)
T ss_pred HHhCCCceEEEE---EcCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHh
Confidence 445677766665 5999887521 223444455555666666654
No 65
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=30.68 E-value=1.5e+02 Score=33.04 Aligned_cols=40 Identities=15% Similarity=0.333 Sum_probs=32.3
Q ss_pred HHHHHHHHhcCCCEEEE-------cc------CCh-------HHHHHHhcCCCEEEEecC
Q 009301 108 SKVVQLLKSQGIERVKV-------FD------TDA-------AVLKALSGSGIKVTVDLP 147 (538)
Q Consensus 108 ~~vv~llk~~~i~~VRl-------Y~------~d~-------~vL~A~a~sgI~V~lgv~ 147 (538)
+++++++|++|++.-|+ +- .|. ++|.++.+.||+.+|.+.
T Consensus 72 ~EDI~Lm~elG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL~ 131 (477)
T PRK15014 72 KEDIKLFAEMGFKCFRTSIAWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVITLS 131 (477)
T ss_pred HHHHHHHHHcCCCEEEecccceeeccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEee
Confidence 78999999999887775 21 132 689999999999999994
No 66
>PRK14328 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=30.54 E-value=4.1e+02 Score=29.03 Aligned_cols=56 Identities=13% Similarity=0.351 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHhCCCCCceeEecccccccccccCCCCCcccCccccchhhhhHHHHHhhcCCceeeccCCCccc
Q 009301 198 LLPAMKNVHEALVKYNLHSSIKVSSPIALSALQNSYPSSAGSFRPELIEPVFKPMLNFLRQTGSFLMVNAYPFFAY 273 (538)
Q Consensus 198 L~~ai~nvk~aL~~~gl~~~I~Vst~~~~~~l~~s~pPS~g~F~~~~~~~~l~~~ldFL~~~~s~~~vNiyPyf~~ 273 (538)
++.+++.+|+++. .+.+++.. + -+|| .+ .+..+.+.++|+.+.+ +-.+++++|--.
T Consensus 284 ~~~~i~~lr~~~~------~i~i~~d~----I-vG~P-------gE-T~ed~~~tl~~i~~l~-~~~~~~~~~sp~ 339 (439)
T PRK14328 284 YLELVEKIKSNIP------DVAITTDI----I-VGFP-------GE-TEEDFEETLDLVKEVR-YDSAFTFIYSKR 339 (439)
T ss_pred HHHHHHHHHHhCC------CCEEEEEE----E-EECC-------CC-CHHHHHHHHHHHHhcC-CCcccceEecCC
Confidence 7777777777531 14454432 1 1233 11 1234667888887653 445677766433
No 67
>cd02876 GH18_SI-CLP Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl hydrolase family 18 (GH18) domain but lacks a chitin-binding domain. The catalytic amino acids of the GH18 domain are not conserved in SI-CLP, similar to the chitolectins YKL-39, YKL-40, and YM1/2. Human SI-CLP is sorted to late endosomes and secretory lysosomes in alternatively activated macrophages.
Probab=30.12 E-value=3.6e+02 Score=27.95 Aligned_cols=90 Identities=14% Similarity=0.094 Sum_probs=46.2
Q ss_pred HHHHHhc--CCCEEE--E--ecCCC-chhhhhCChhHHHHHHHHHhhhcCCCCeEEEEeecC-ccccC-CCCChhh-HHH
Q 009301 131 VLKALSG--SGIKVT--V--DLPNE-LLFSAAKRPSFAFSWVQKNVAAYHPDTQIEAIGVGN-EVFVD-PHNTTKF-LLP 200 (538)
Q Consensus 131 vL~A~a~--sgI~V~--l--gv~n~-~~~~~a~~~~aa~~Wv~~nv~~y~p~~~I~~I~VGN-Evl~~-~~~~~~~-L~~ 200 (538)
.+.+++. .+++|+ + |=|.. ....++++++.-.+++ +++..+.....+.||-+=- |-... +...... ++.
T Consensus 56 ~~~~lk~~~~~lkvlp~i~~gg~~~~~f~~~~~~~~~R~~fi-~s~~~~~~~~~~DGidiD~we~p~~~~~~~d~~~~~~ 134 (318)
T cd02876 56 WIEEVRKANKNIKILPRVLFEGWSYQDLQSLLNDEQEREKLI-KLLVTTAKKNHFDGIVLEVWSQLAAYGVPDKRKELIQ 134 (318)
T ss_pred HHHHHHhhCCCcEEEeEEEECCCCHHHHHHHHcCHHHHHHHH-HHHHHHHHHcCCCcEEEechhhhcccCCHHHHHHHHH
Confidence 3445543 468888 4 33543 2445666655433433 3344443334555664421 11111 0111234 889
Q ss_pred HHHHHHHHHHhCCCCCceeEecc
Q 009301 201 AMKNVHEALVKYNLHSSIKVSSP 223 (538)
Q Consensus 201 ai~nvk~aL~~~gl~~~I~Vst~ 223 (538)
-|+.++++|.+.|+. +-|+.+
T Consensus 135 ~l~el~~~l~~~~~~--l~~~v~ 155 (318)
T cd02876 135 LVIHLGETLHSANLK--LILVIP 155 (318)
T ss_pred HHHHHHHHHhhcCCE--EEEEEc
Confidence 999999999887753 444443
No 68
>COG0807 RibA GTP cyclohydrolase II [Coenzyme metabolism]
Probab=29.50 E-value=96 Score=30.52 Aligned_cols=39 Identities=28% Similarity=0.531 Sum_probs=35.7
Q ss_pred HHHHHhcCCCEEEEccCChHHHHHHhcCCCEEEEecCCC
Q 009301 111 VQLLKSQGIERVKVFDTDAAVLKALSGSGIKVTVDLPNE 149 (538)
Q Consensus 111 v~llk~~~i~~VRlY~~d~~vL~A~a~sgI~V~lgv~n~ 149 (538)
.++|+.+||+.||+-+.+|.=..++.+.||+|.--++..
T Consensus 133 AqIL~dLGI~~irLLtnnp~K~~~l~~~Gi~vverv~~~ 171 (193)
T COG0807 133 AQILKDLGIKKIRLLTNNPRKIYGLEGFGINVVERVPLI 171 (193)
T ss_pred HHHHHHcCCcEEEEecCChHHHHHHHhCCceEEEEeecC
Confidence 689999999999999999999999999999999888764
No 69
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=29.25 E-value=1.2e+02 Score=27.85 Aligned_cols=43 Identities=19% Similarity=0.302 Sum_probs=34.0
Q ss_pred HHHHHHHHHhcCCCEEEEccCC-----------------------hHHHHHHhcCCCEEEEecCCC
Q 009301 107 ASKVVQLLKSQGIERVKVFDTD-----------------------AAVLKALSGSGIKVTVDLPNE 149 (538)
Q Consensus 107 ~~~vv~llk~~~i~~VRlY~~d-----------------------~~vL~A~a~sgI~V~lgv~n~ 149 (538)
|++.++.||+.+++.|-+|.-. .++++|+.+.||+|++-+...
T Consensus 2 ~~~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L~~Dllge~v~a~h~~Girv~ay~~~~ 67 (132)
T PF14871_consen 2 PEQFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGLKRDLLGEQVEACHERGIRVPAYFDFS 67 (132)
T ss_pred HHHHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCCCcCHHHHHHHHHHHCCCEEEEEEeee
Confidence 6788889998888888887531 267899999999999877543
No 70
>PRK14330 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=29.12 E-value=4.8e+02 Score=28.45 Aligned_cols=56 Identities=18% Similarity=0.330 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHhCCCCCceeEecccccccccccCCCCCcccCccccchhhhhHHHHHhhcCCceeeccCCCccc
Q 009301 198 LLPAMKNVHEALVKYNLHSSIKVSSPIALSALQNSYPSSAGSFRPELIEPVFKPMLNFLRQTGSFLMVNAYPFFAY 273 (538)
Q Consensus 198 L~~ai~nvk~aL~~~gl~~~I~Vst~~~~~~l~~s~pPS~g~F~~~~~~~~l~~~ldFL~~~~s~~~vNiyPyf~~ 273 (538)
...+++.+|+.+ . .|.|++.. + -+|| .+ .+..+.+.++|+.+.+ +-.+|+++|--.
T Consensus 277 ~~~~i~~lr~~~-----~-~i~i~~d~----I-vGfP-------gE-T~edf~~tl~fi~~~~-~~~~~~~~~sp~ 332 (434)
T PRK14330 277 YLELIEKIRSKV-----P-DASISSDI----I-VGFP-------TE-TEEDFMETVDLVEKAQ-FERLNLAIYSPR 332 (434)
T ss_pred HHHHHHHHHHhC-----C-CCEEEEEE----E-EECC-------CC-CHHHHHHHHHHHHhcC-CCEEeeeeccCC
Confidence 677777777752 1 25666643 1 1243 12 2235668899987765 345566666444
No 71
>PRK14334 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=28.66 E-value=6e+02 Score=27.77 Aligned_cols=23 Identities=13% Similarity=0.319 Sum_probs=14.8
Q ss_pred hhhhHHHHHhhcCCceeeccCCCc
Q 009301 248 VFKPMLNFLRQTGSFLMVNAYPFF 271 (538)
Q Consensus 248 ~l~~~ldFL~~~~s~~~vNiyPyf 271 (538)
.+.+.++|+.+.+ +-.+++|+|-
T Consensus 305 d~~~tl~~i~~l~-~~~i~~f~ys 327 (440)
T PRK14334 305 DFQETLSLYDEVG-YDSAYMFIYS 327 (440)
T ss_pred HHHHHHHHHHhcC-CCEeeeeEee
Confidence 4557888887654 4456777653
No 72
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=28.02 E-value=2.3e+02 Score=33.20 Aligned_cols=151 Identities=20% Similarity=0.328 Sum_probs=0.0
Q ss_pred cCChHHHHHHhcCCCEEEEecCCCchhhhhCChhHHHHHHHHHhhhcCCCCeEEEEeecCccccCCCCChhh-HHHHHHH
Q 009301 126 DTDAAVLKALSGSGIKVTVDLPNELLFSAAKRPSFAFSWVQKNVAAYHPDTQIEAIGVGNEVFVDPHNTTKF-LLPAMKN 204 (538)
Q Consensus 126 ~~d~~vL~A~a~sgI~V~lgv~n~~~~~~a~~~~aa~~Wv~~nv~~y~p~~~I~~I~VGNEvl~~~~~~~~~-L~~ai~n 204 (538)
|+.+..|.+.+..|+. +++..+.++++...+|-+---... ..... |...++.
T Consensus 475 d~s~~a~~~~~~~g~~-------~~~~~~~~~~~~~~~wt~~k~~~l--------------------~~f~~~l~~~v~~ 527 (671)
T PRK14582 475 DASAPAITAYQQAGFS-------GSLSEIRQNPEQFKQWTRFKSRAL--------------------TDFTLELSARVKA 527 (671)
T ss_pred cCCHHHHHHHHHcCCC-------cchhhhhcCHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHh
Q ss_pred HH--HHHHhCCCCCceeEecccccccccccCCCCCcccCccccchhhhhHHHHHhhcCCceeeccCCCcccCCCCCcccc
Q 009301 205 VH--EALVKYNLHSSIKVSSPIALSALQNSYPSSAGSFRPELIEPVFKPMLNFLRQTGSFLMVNAYPFFAYESNTDVISL 282 (538)
Q Consensus 205 vk--~aL~~~gl~~~I~Vst~~~~~~l~~s~pPS~g~F~~~~~~~~l~~~ldFL~~~~s~~~vNiyPyf~~~~~p~~i~l 282 (538)
++ ....+.++-. -+|..+.+...+++ .+-+||+ +=|+..|=..||-+.
T Consensus 528 ~~~~~~~tarni~a-~~~l~p~~e~w~aQ-------------------~l~~~~~-~yD~~a~mampyme~--------- 577 (671)
T PRK14582 528 IRGPQVKTARNIFA-LPVIQPESEAWFAQ-------------------NLDDFLK-SYDWTAPMAMPLMEG--------- 577 (671)
T ss_pred hcCccceeeccccc-cccCChhHHHHHHh-------------------HHHHHHh-hcchhhhhcchhhhc---------
Q ss_pred ccccccCCCceeeCCCCccccchHHHHHHHHHHHHHhcCCCCccEEEeeeccCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q 009301 283 DYALFRENPGVVDAGNGLRYFSLFDAQIDAVFAALSALKYDDIRMVVTETGWPSKGDENENGASVENAAAYNGNLVRRIL 362 (538)
Q Consensus 283 dyAlF~~~~g~~d~~t~~~Y~n~fda~~Dav~~a~~~~g~~~~~VvVsEtGWPS~G~~~~~~as~~Na~~y~~~lv~~~~ 362 (538)
++.+++..+..+|++++.
T Consensus 578 --------------------------------------------------------------~~~~~~~~wl~~l~~~v~ 595 (671)
T PRK14582 578 --------------------------------------------------------------VAEKSSDAWLIQLVNQVK 595 (671)
T ss_pred --------------------------------------------------------------cCcccHHHHHHHHHHHHH
Q ss_pred hCCCCCCCCCCCccEEEEEeecCCCCCCCC------------------CCCccccccCC
Q 009301 363 TGGGTPLRPKADLTVYLFALFNEDQKPGPT------------------SERNYGLFYPN 403 (538)
Q Consensus 363 ~~~GTP~rpg~~~~~yiF~lFdE~~K~G~~------------------~E~~wGLf~~d 403 (538)
. +|+ +.+-.+||+--.+|+.+.. .-+||| ++||
T Consensus 596 ~------~~~-~~~k~vfelq~~dw~~~~~~~i~~~~l~~~~~~l~~~g~~~~g-yyPd 646 (671)
T PRK14582 596 N------IPG-ALDKTIFELQARDWQKNGQQAISSQQLAHWMSLLQLNGVKNYG-YYPD 646 (671)
T ss_pred h------cCC-cccceEEEeeccccccCCCCCCCHHHHHHHHHHHHHcCCeeee-eCCc
No 73
>cd02873 GH18_IDGF The IDGF's (imaginal disc growth factors) are a family of growth factors identified in insects that include at least five members, some of which are encoded by genes in a tight cluster. The IDGF's have an eight-stranded alpha/beta barrel fold and are related to the glycosyl hydrolase family 18 (GH18) chitinases, but they have an amino acid substitution known to abolish chitinase catalytic activity. IDGFs may have evolved from chitinases to gain new functions as growth factors, interacting with cell surface glycoproteins involved in growth-promoting processes.
Probab=27.04 E-value=4.3e+02 Score=28.71 Aligned_cols=17 Identities=18% Similarity=0.270 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHhCCC
Q 009301 198 LLPAMKNVHEALVKYNL 214 (538)
Q Consensus 198 L~~ai~nvk~aL~~~gl 214 (538)
++.-|+.+|++|.+.++
T Consensus 171 f~~Ll~elr~~l~~~~~ 187 (413)
T cd02873 171 FTALVRELKNALRPDGL 187 (413)
T ss_pred HHHHHHHHHHHhcccCc
Confidence 88899999999988765
No 74
>PRK14327 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=26.57 E-value=9.6e+02 Score=27.03 Aligned_cols=56 Identities=20% Similarity=0.463 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHhCCCCCceeEecccccccccccCCCCCcccCccccchhhhhHHHHHhhcCCceeeccCCCccc
Q 009301 198 LLPAMKNVHEALVKYNLHSSIKVSSPIALSALQNSYPSSAGSFRPELIEPVFKPMLNFLRQTGSFLMVNAYPFFAY 273 (538)
Q Consensus 198 L~~ai~nvk~aL~~~gl~~~I~Vst~~~~~~l~~s~pPS~g~F~~~~~~~~l~~~ldFL~~~~s~~~vNiyPyf~~ 273 (538)
.+.+++.+|+++. .|.++|.. + -+|| .+ .+..+.+.++|+.+.+ +-.+++|+|--.
T Consensus 349 ~~~~v~~lr~~~p------~i~i~tdi----I-vGfP-------gE-T~edf~~Tl~~v~~l~-~d~~~~f~yspr 404 (509)
T PRK14327 349 YLELVRKIKEAIP------NVALTTDI----I-VGFP-------NE-TDEQFEETLSLYREVG-FDHAYTFIYSPR 404 (509)
T ss_pred HHHHHHHHHHhCC------CcEEeeeE----E-EeCC-------CC-CHHHHHHHHHHHHHcC-CCeEEEeeeeCC
Confidence 7777777777532 15555432 1 2243 11 1234567788877653 224566665333
No 75
>PRK14339 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=26.38 E-value=8.4e+02 Score=26.51 Aligned_cols=56 Identities=13% Similarity=0.331 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHhCCCCCceeEecccccccccccCCCCCcccCccccchhhhhHHHHHhhcCCceeeccCCCccc
Q 009301 198 LLPAMKNVHEALVKYNLHSSIKVSSPIALSALQNSYPSSAGSFRPELIEPVFKPMLNFLRQTGSFLMVNAYPFFAY 273 (538)
Q Consensus 198 L~~ai~nvk~aL~~~gl~~~I~Vst~~~~~~l~~s~pPS~g~F~~~~~~~~l~~~ldFL~~~~s~~~vNiyPyf~~ 273 (538)
.+.+++.+|+++. .+.++|. .+ -+|| .+ .+..+.+.++|+.+.. +-.+++++|--.
T Consensus 267 ~~~~v~~lr~~~p------~i~i~~d----~I-vGfP-------gE-Teedf~~Tl~fl~~l~-~~~~~~f~~sp~ 322 (420)
T PRK14339 267 FLNRAEKLRALVP------EVSISTD----II-VGFP-------GE-SDKDFEDTMDVLEKVR-FEQIFSFKYSPR 322 (420)
T ss_pred HHHHHHHHHHHCC------CCEEEEE----EE-EECC-------CC-CHHHHHHHHHHHHhcC-CCEEeeEecCCC
Confidence 6777777777532 1556653 22 2343 12 2235667888877654 234677765443
No 76
>PRK14331 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=25.72 E-value=8.7e+02 Score=26.45 Aligned_cols=107 Identities=19% Similarity=0.241 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHhCCCCCceeEecccccccccccCCCCCcccCccccchhhhhHHHHHhhcCCceeeccCCCcccCCCC
Q 009301 198 LLPAMKNVHEALVKYNLHSSIKVSSPIALSALQNSYPSSAGSFRPELIEPVFKPMLNFLRQTGSFLMVNAYPFFAYESNT 277 (538)
Q Consensus 198 L~~ai~nvk~aL~~~gl~~~I~Vst~~~~~~l~~s~pPS~g~F~~~~~~~~l~~~ldFL~~~~s~~~vNiyPyf~~~~~p 277 (538)
...+++.+|+++. | |.|++..- -+|| .+ .+..+.+.++|+.+.. +-.+++|+|--+-+.+
T Consensus 282 ~~~~v~~lr~~~~--g----i~i~~d~I-----vG~P-------gE-T~ed~~~tl~~l~~l~-~~~i~~f~~sp~pGT~ 341 (437)
T PRK14331 282 YLEKIELLKEYIP--D----ITFSTDII-----VGFP-------TE-TEEDFEETLDVLKKVE-FEQVFSFKYSPRPGTP 341 (437)
T ss_pred HHHHHHHHHHhCC--C----CEEecCEE-----EECC-------CC-CHHHHHHHHHHHHhcC-cceeeeeEecCCCCcc
Confidence 7777887776532 2 55555431 1233 11 1234668889887764 3356777763332221
Q ss_pred CccccccccccCCCceeeCCCCccccchHHHHHHHHHHHHHhcCCCCccEEEeee
Q 009301 278 DVISLDYALFRENPGVVDAGNGLRYFSLFDAQIDAVFAALSALKYDDIRMVVTET 332 (538)
Q Consensus 278 ~~i~ldyAlF~~~~g~~d~~t~~~Y~n~fda~~Dav~~a~~~~g~~~~~VvVsEt 332 (538)
-|. +. + .+.+.....+...|.+-+-+-.....++.-...++|+|.|.
T Consensus 342 -----~~~-~~-~-~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~g~~~~vlve~~ 388 (437)
T PRK14331 342 -----AAY-ME-G-QEPDEVKTKRMNRLLELQKEITFKKALSYEGTVQEVLVEEE 388 (437)
T ss_pred -----hhh-CC-C-CCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEe
Confidence 011 11 0 11111112344455554444333333443235678888653
No 77
>PLN00196 alpha-amylase; Provisional
Probab=25.37 E-value=2.1e+02 Score=31.54 Aligned_cols=56 Identities=25% Similarity=0.424 Sum_probs=38.0
Q ss_pred ceeEEecCCCCCCCC---HHHHHHHHHhcCCCEE-----------------EEccCC-h---------HHHHHHhcCCCE
Q 009301 92 SIGVNYGRIANNLPS---ASKVVQLLKSQGIERV-----------------KVFDTD-A---------AVLKALSGSGIK 141 (538)
Q Consensus 92 ~~GvnYg~~~~n~p~---~~~vv~llk~~~i~~V-----------------RlY~~d-~---------~vL~A~a~sgI~ 141 (538)
.-|++|.....+.-. -.+-++.|+++||+.| +.|+.| + ++++++.+.||+
T Consensus 28 ~Q~F~W~~~~~~gg~~~~i~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIk 107 (428)
T PLN00196 28 FQGFNWESWKQNGGWYNFLMGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQ 107 (428)
T ss_pred EEeeccCCCCCCCcCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCE
Confidence 348888653322112 2344778899998888 456665 2 567888899999
Q ss_pred EEEecC
Q 009301 142 VTVDLP 147 (538)
Q Consensus 142 V~lgv~ 147 (538)
|++++-
T Consensus 108 VilDvV 113 (428)
T PLN00196 108 VIADIV 113 (428)
T ss_pred EEEEEC
Confidence 999763
No 78
>PF04909 Amidohydro_2: Amidohydrolase; InterPro: IPR006992 These proteins are related to the metal-dependent hydrolase superfamily []. The family includes 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase which converts alpha-amino-beta-carboxymuconate-epsilon- semialdehyde (ACMS) to alpha-aminomuconate semialdehyde (AMS). ACMS can be converted non-enzymatically to quinolate, a potent endogenous excitoxin of neuronal cells which is implicated in the pathogenesis of various neurodegenerative disorders. In the presence of AMCSD, ACMS is converted to AMS, a benign catabolite. 2-amino-3-(3-oxoprop-2-enyl)-but-2-enedioate = 2-aminomuconate semialdehyde + CO2. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2QPX_A 4D8L_A 3K4W_I 3IRS_B 4DZI_B 3S4T_G 2GWG_B 3IJ6_A 2DVX_C 2DVT_C ....
Probab=24.94 E-value=4.5e+02 Score=25.49 Aligned_cols=80 Identities=14% Similarity=0.250 Sum_probs=47.3
Q ss_pred HHHHHHHHHhhhcCCCCeEEEEeecCccccCCCCChhh-HHHHHHHHHHHHHhCCCCCceeEecccccccccccCCCCCc
Q 009301 160 FAFSWVQKNVAAYHPDTQIEAIGVGNEVFVDPHNTTKF-LLPAMKNVHEALVKYNLHSSIKVSSPIALSALQNSYPSSAG 238 (538)
Q Consensus 160 aa~~Wv~~nv~~y~p~~~I~~I~VGNEvl~~~~~~~~~-L~~ai~nvk~aL~~~gl~~~I~Vst~~~~~~l~~s~pPS~g 238 (538)
....|+.+.+..+ + ..+.+...-. .. .-.+++.+.+.+.+.|+.+ |++.......
T Consensus 56 ~~n~~~~~~~~~~-~-~~~~~~~~~~----------~~~~~~~~~~l~~~~~~~g~~G-v~l~~~~~~~----------- 111 (273)
T PF04909_consen 56 GFNDWLVELAAKH-P-DRFIGFAAIP----------PPDPEDAVEELERALQELGFRG-VKLHPDLGGF----------- 111 (273)
T ss_dssp HHHHHHHHHHHHS-T-TTEEEEEEET----------TTSHHHHHHHHHHHHHTTTESE-EEEESSETTC-----------
T ss_pred HHHHHHHHHHHHc-C-CCEEEEEEec----------CCCchhHHHHHHHhccccceee-eEecCCCCcc-----------
Confidence 3466777767665 3 2333332211 11 3468888999999999886 8877643211
Q ss_pred ccCccccchhh-hhHHHHHhhcCCceeecc
Q 009301 239 SFRPELIEPVF-KPMLNFLRQTGSFLMVNA 267 (538)
Q Consensus 239 ~F~~~~~~~~l-~~~ldFL~~~~s~~~vNi 267 (538)
..+ ++.+ +++++.+++.+=|+.+|.
T Consensus 112 --~~~--~~~~~~~~~~~~~~~~~pv~~H~ 137 (273)
T PF04909_consen 112 --DPD--DPRLDDPIFEAAEELGLPVLIHT 137 (273)
T ss_dssp --CTT--SGHCHHHHHHHHHHHT-EEEEEE
T ss_pred --ccc--cHHHHHHHHHHHHhhccceeeec
Confidence 111 1223 378888888898888884
No 79
>PRK09989 hypothetical protein; Provisional
Probab=24.16 E-value=7.1e+02 Score=24.65 Aligned_cols=164 Identities=10% Similarity=0.115 Sum_probs=83.5
Q ss_pred eeEEecCCCCCCCCHHHHHHHHHhcCCCEEEEc---cCCh-HHHHHHhcCCCEEEE-ecCCCchh-------hhhCChhH
Q 009301 93 IGVNYGRIANNLPSASKVVQLLKSQGIERVKVF---DTDA-AVLKALSGSGIKVTV-DLPNELLF-------SAAKRPSF 160 (538)
Q Consensus 93 ~GvnYg~~~~n~p~~~~vv~llk~~~i~~VRlY---~~d~-~vL~A~a~sgI~V~l-gv~n~~~~-------~~a~~~~a 160 (538)
..+|.+..-.+. +-.+.++.+++.|++.|-+. +.+. ++-+.++++||+|.. +.+..++. ....+...
T Consensus 4 ~~~~~~~~~~~~-~l~~~l~~~~~~Gfd~VEl~~~~~~~~~~~~~~l~~~Gl~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (258)
T PRK09989 4 FAANLSMMFTEV-PFIERFAAARKAGFDAVEFLFPYDYSTLQIQKQLEQNHLTLALFNTAPGDINAGEWGLSALPGREHE 82 (258)
T ss_pred eeeehhhhhcCC-CHHHHHHHHHHcCCCEEEECCcccCCHHHHHHHHHHcCCcEEEeccCCCccCCCCCcccCCCccHHH
Confidence 346666665544 56788999999999999983 3343 666788899999987 32211110 11111222
Q ss_pred HHHHHHHHhh--hcCCCCeEEEEeecCccccCCC-CChhh-HHHHHHHHHHHHHhCCCCCceeEecccccccccccCCCC
Q 009301 161 AFSWVQKNVA--AYHPDTQIEAIGVGNEVFVDPH-NTTKF-LLPAMKNVHEALVKYNLHSSIKVSSPIALSALQNSYPSS 236 (538)
Q Consensus 161 a~~Wv~~nv~--~y~p~~~I~~I~VGNEvl~~~~-~~~~~-L~~ai~nvk~aL~~~gl~~~I~Vst~~~~~~l~~s~pPS 236 (538)
+.+.+++.+. .-+....| .+..|.-. ...+ ..... ++..++.+-...++.|.. +-+-. +.. .+-+
T Consensus 83 ~~~~l~~~i~~A~~lg~~~v-~v~~g~~~-~~~~~~~~~~~~~~~l~~l~~~a~~~gv~--l~lE~---l~~---~~~~- 151 (258)
T PRK09989 83 ARADIDLALEYALALNCEQV-HVMAGVVP-AGEDAERYRAVFIDNLRYAADRFAPHGKR--ILVEA---LSP---GVKP- 151 (258)
T ss_pred HHHHHHHHHHHHHHhCcCEE-EECccCCC-CCCCHHHHHHHHHHHHHHHHHHHHhcCCE--EEEEe---CCC---CCCC-
Confidence 3333444331 11222333 34455411 1111 11234 778888887777777742 22211 100 0000
Q ss_pred CcccCccccchhhhhHHHHHhhcCC-ceeeccCCCcccC
Q 009301 237 AGSFRPELIEPVFKPMLNFLRQTGS-FLMVNAYPFFAYE 274 (538)
Q Consensus 237 ~g~F~~~~~~~~l~~~ldFL~~~~s-~~~vNiyPyf~~~ 274 (538)
+.+ +. -..+++++|.+.++ -+++.+-.|+.+.
T Consensus 152 -~~~---~~--~~~~~~~ll~~v~~~~v~l~lD~~h~~~ 184 (258)
T PRK09989 152 -HYL---FS--SQYQALAIVEEVARDNVFIQLDTFHAQK 184 (258)
T ss_pred -CCc---cC--CHHHHHHHHHHcCCCCeEEEeehHhHHH
Confidence 001 11 12366777777653 4777776665543
No 80
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=22.25 E-value=2.3e+02 Score=29.82 Aligned_cols=75 Identities=13% Similarity=0.148 Sum_probs=39.7
Q ss_pred cCCCEEEEecC--CC---chhhhhCChhHHHHHHHHHhhhcCCCCeEEEEeecCccccC--CCCChhh-HHHHHHHHHHH
Q 009301 137 GSGIKVTVDLP--NE---LLFSAAKRPSFAFSWVQKNVAAYHPDTQIEAIGVGNEVFVD--PHNTTKF-LLPAMKNVHEA 208 (538)
Q Consensus 137 ~sgI~V~lgv~--n~---~~~~~a~~~~aa~~Wv~~nv~~y~p~~~I~~I~VGNEvl~~--~~~~~~~-L~~ai~nvk~a 208 (538)
+.+++|++.|- .. ....++.+.+.-.++++ ++..++...++.||.+==|-... ....... ++..|+.+|++
T Consensus 68 ~p~lkvlisiGG~~~~~~~f~~~~~~~~~r~~fi~-~iv~~l~~~~~DGidiDwE~p~~~~~~~~d~~~~~~ll~~lr~~ 146 (362)
T cd02872 68 NPNLKTLLAIGGWNFGSAKFSAMAASPENRKTFIK-SAIAFLRKYGFDGLDLDWEYPGQRGGPPEDKENFVTLLKELREA 146 (362)
T ss_pred CCCceEEEEEcCCCCCcchhHHHhCCHHHHHHHHH-HHHHHHHHcCCCCeeeeeeccccCCCCHHHHHHHHHHHHHHHHH
Confidence 35789988773 32 23445555544334333 23333322345555543332211 1112234 88999999999
Q ss_pred HHhC
Q 009301 209 LVKY 212 (538)
Q Consensus 209 L~~~ 212 (538)
|.+.
T Consensus 147 l~~~ 150 (362)
T cd02872 147 FEPE 150 (362)
T ss_pred HHhh
Confidence 9987
No 81
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=22.14 E-value=3.6e+02 Score=28.23 Aligned_cols=41 Identities=24% Similarity=0.334 Sum_probs=26.9
Q ss_pred HHHHHHHhcC-CCEEEEcc---------CChHHHHHHhcCCCEEEEecCCC
Q 009301 109 KVVQLLKSQG-IERVKVFD---------TDAAVLKALSGSGIKVTVDLPNE 149 (538)
Q Consensus 109 ~vv~llk~~~-i~~VRlY~---------~d~~vL~A~a~sgI~V~lgv~n~ 149 (538)
++++.+++.+ +..||+.. .+.+.++.++++|..+.+++--.
T Consensus 157 ~ll~~l~~i~~v~~iri~Tr~~v~~p~rit~ell~~L~~~g~~v~i~l~~~ 207 (321)
T TIGR03822 157 DIMARLAAIDHVKIVRFHTRVPVADPARVTPALIAALKTSGKTVYVALHAN 207 (321)
T ss_pred HHHHHHHhCCCccEEEEeCCCcccChhhcCHHHHHHHHHcCCcEEEEecCC
Confidence 3444555543 56778864 24577888888888777777543
No 82
>cd01543 PBP1_XylR Ligand-binding domain of DNA transcription repressor specific for xylose (XylR). Ligand-binding domain of DNA transcription repressor specific for xylose (XylR), a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of XylR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=22.10 E-value=2.7e+02 Score=27.12 Aligned_cols=100 Identities=10% Similarity=0.037 Sum_probs=49.8
Q ss_pred HHHHHHHHhcCCCEEEEccCCh---------HHHHHHhcCCCEEEEe--cCCCchhhhhCChhHHHHHHHHHhhhcCCCC
Q 009301 108 SKVVQLLKSQGIERVKVFDTDA---------AVLKALSGSGIKVTVD--LPNELLFSAAKRPSFAFSWVQKNVAAYHPDT 176 (538)
Q Consensus 108 ~~vv~llk~~~i~~VRlY~~d~---------~vL~A~a~sgI~V~lg--v~n~~~~~~a~~~~aa~~Wv~~nv~~y~p~~ 176 (538)
...++.|.+.|.++|=+.+... ...++++..|+.+... .+.....+.....+.+.+|++++ .
T Consensus 98 ~~~~~~l~~~g~~~i~~i~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------~ 170 (265)
T cd01543 98 RMAAEHFLERGFRHFAFYGLPGARWSDEREEAFRQLVAEAGYECSFFYRGLSTDAQSWEEEQEELAQWLQSL-------P 170 (265)
T ss_pred HHHHHHHHHCCCcEEEEEcCCCCHHHHHHHHHHHHHHHHcCCccccccCccccccccHHHHHHHHHHHHhcC-------C
Confidence 4567777777877776654331 2345677788876321 11111111111123445555432 2
Q ss_pred eEEEEeecCccccCCCCChhhHHHHHHHHHHHHHhCCC--CCceeEecccccc
Q 009301 177 QIEAIGVGNEVFVDPHNTTKFLLPAMKNVHEALVKYNL--HSSIKVSSPIALS 227 (538)
Q Consensus 177 ~I~~I~VGNEvl~~~~~~~~~L~~ai~nvk~aL~~~gl--~~~I~Vst~~~~~ 227 (538)
.+++|++.|+.+.. -+.++|++.|+ .+.|.|..-+...
T Consensus 171 ~~~ai~~~~d~~a~-------------g~~~~l~~~g~~vp~di~vigfd~~~ 210 (265)
T cd01543 171 KPVGIFACTDARAR-------------QLLEACRRAGIAVPEEVAVLGVDNDE 210 (265)
T ss_pred CCcEEEecChHHHH-------------HHHHHHHHhCCCCCCceEEEeeCCch
Confidence 35677776644322 12334444565 3457766655443
No 83
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=21.94 E-value=85 Score=34.54 Aligned_cols=18 Identities=17% Similarity=0.163 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHhCCCC
Q 009301 198 LLPAMKNVHEALVKYNLH 215 (538)
Q Consensus 198 L~~ai~nvk~aL~~~gl~ 215 (538)
.+.-++.+.+.|.++||.
T Consensus 265 ~~~~~~~~~~~L~~~Gy~ 282 (453)
T PRK13347 265 RLRQARAVADRLLAAGYV 282 (453)
T ss_pred HHHHHHHHHHHHHHCCCE
Confidence 566777888999999996
No 84
>TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125. This clade spans alpha and gamma proteobacteria, cyano bacteria, deinococcus, porphyromonas, aquifex, helicobacter, campylobacter, thermotoga, chlamydia, streptococcus coelicolor and clostridium, but does not include most other gram positive bacteria, archaea or eukaryotes.
Probab=20.12 E-value=1.1e+03 Score=25.48 Aligned_cols=58 Identities=19% Similarity=0.366 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHhCCCCCceeEecccccccccccCCCCCcccCccccchhhhhHHHHHhhcCCceeeccCCCcccCC
Q 009301 198 LLPAMKNVHEALVKYNLHSSIKVSSPIALSALQNSYPSSAGSFRPELIEPVFKPMLNFLRQTGSFLMVNAYPFFAYES 275 (538)
Q Consensus 198 L~~ai~nvk~aL~~~gl~~~I~Vst~~~~~~l~~s~pPS~g~F~~~~~~~~l~~~ldFL~~~~s~~~vNiyPyf~~~~ 275 (538)
++.+++.+|++. . .+.|++.. + -+|| .+ .+..+.+.++|+.+.+ +-.+|+++|--+-+
T Consensus 272 ~~~~i~~l~~~~----~--~i~i~~~~----I-~G~P-------gE-T~e~~~~t~~fl~~~~-~~~~~~~~~sp~pG 329 (430)
T TIGR01125 272 QLDFIERLREKC----P--DAVLRTTF----I-VGFP-------GE-TEEDFQELLDFVEEGQ-FDRLGAFTYSPEEG 329 (430)
T ss_pred HHHHHHHHHHhC----C--CCeEeEEE----E-EECC-------CC-CHHHHHHHHHHHHhcC-CCEEeeeeccCCCC
Confidence 777777777753 1 14455432 1 1233 11 1235678899987754 45667777755533
No 85
>PRK14332 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=20.04 E-value=8.6e+02 Score=26.78 Aligned_cols=109 Identities=17% Similarity=0.241 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHhCCCCCceeEecccccccccccCCCCCcccCccccchhhhhHHHHHhhcCCceeeccCCCcccCCCC
Q 009301 198 LLPAMKNVHEALVKYNLHSSIKVSSPIALSALQNSYPSSAGSFRPELIEPVFKPMLNFLRQTGSFLMVNAYPFFAYESNT 277 (538)
Q Consensus 198 L~~ai~nvk~aL~~~gl~~~I~Vst~~~~~~l~~s~pPS~g~F~~~~~~~~l~~~ldFL~~~~s~~~vNiyPyf~~~~~p 277 (538)
...+++.+|++... |.++|. .+ -+|| .+ .+..+.+.++|+.+.+ +-.+++|+|--..+.+
T Consensus 288 ~~~~i~~lr~~~p~------i~i~td----~I-vGfP-------gE-T~edf~~tl~~v~~l~-~~~~~~f~ys~~~GT~ 347 (449)
T PRK14332 288 FLDVVKEIRNIVPD------VGITTD----II-VGFP-------NE-TEEEFEDTLAVVREVQ-FDMAFMFKYSEREGTM 347 (449)
T ss_pred HHHHHHHHHHhCCC------CEEEEE----EE-eeCC-------CC-CHHHHHHHHHHHHhCC-CCEEEEEEecCCCCCh
Confidence 77888888876422 445443 22 2243 12 1234567888876654 3356777774443332
Q ss_pred CccccccccccCCCceeeCCCCccccchHHHHHHHHHHHHHhcCCCCccEEEeeec
Q 009301 278 DVISLDYALFRENPGVVDAGNGLRYFSLFDAQIDAVFAALSALKYDDIRMVVTETG 333 (538)
Q Consensus 278 ~~i~ldyAlF~~~~g~~d~~t~~~Y~n~fda~~Dav~~a~~~~g~~~~~VvVsEtG 333 (538)
. +..+.. .+.+.....++..+.+.|-.-.....++.-....+|+|.|.+
T Consensus 348 a-----~~~~~~--~v~~~~~~~R~~~l~~~~~~~~~~~~~~~vG~~~~vlve~~~ 396 (449)
T PRK14332 348 A-----KRKLPD--NVPEEVKSARLTKLVDLQTSISHEQNRARIGRVYSILIENTS 396 (449)
T ss_pred h-----HHhCcC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 1 111211 122222223444444444333333333332356888887644
Done!