Query 009302
Match_columns 538
No_of_seqs 250 out of 1271
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 23:25:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009302.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009302hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3m65_A ATP-dependent protease 99.9 7.7E-27 2.6E-31 225.8 21.6 112 82-198 4-118 (209)
2 1zbo_A Hypothetical protein BP 99.9 2.2E-26 7.5E-31 222.7 20.1 109 85-198 2-115 (210)
3 3ljc_A ATP-dependent protease 99.9 3.8E-26 1.3E-30 227.4 16.1 111 83-198 14-127 (252)
4 2ane_A ATP-dependent protease 99.9 2E-22 6.9E-27 181.2 16.7 115 77-196 8-125 (125)
5 3e0o_A Peptide methionine sulf 83.9 1.1 3.8E-05 40.8 4.8 66 431-515 41-106 (144)
6 3hcg_A Peptide methionine sulf 83.4 1.1 3.8E-05 40.9 4.6 65 431-515 42-108 (146)
7 3cxk_A Methionine-R-sulfoxide 82.4 1 3.6E-05 41.8 4.0 65 431-515 72-138 (164)
8 3hcj_A MSRB, peptide methionin 80.9 0.86 2.9E-05 41.9 2.9 65 431-515 49-115 (154)
9 3mao_A Methionine-R-sulfoxide 78.5 1.9 6.6E-05 37.3 4.2 63 431-514 12-76 (105)
10 3eqt_A ATP-dependent RNA helic 76.1 1.1 3.8E-05 40.9 2.1 71 432-513 13-83 (145)
11 3e0m_A Peptide methionine sulf 75.8 2.3 7.8E-05 43.4 4.5 65 431-515 208-274 (313)
12 2kao_A Methionine-R-sulfoxide 75.7 2.7 9.1E-05 37.4 4.3 64 430-514 18-83 (124)
13 2l1u_A MSRB2, methionine-R-sul 73.8 2.8 9.5E-05 38.2 4.0 65 431-515 36-109 (143)
14 2k8d_A Peptide methionine sulf 71.6 1.1 3.7E-05 41.2 0.9 67 431-515 60-126 (151)
15 2kv1_A Methionine-R-sulfoxide 62.8 6.5 0.00022 34.9 4.0 63 431-514 19-83 (124)
16 1hxr_A Guanine nucleotide exch 55.5 9.1 0.00031 33.5 3.6 21 497-517 81-102 (115)
17 4a2v_A RIG-I, retinoic acid in 47.9 8.5 0.00029 34.5 2.3 68 432-513 7-77 (131)
18 3ga3_A Interferon-induced heli 45.4 7.7 0.00026 34.8 1.6 68 432-513 12-80 (133)
19 3lrr_A Probable ATP-dependent 44.8 8.1 0.00028 34.1 1.6 68 432-513 5-75 (121)
20 2kq9_A DNAK suppressor protein 40.8 35 0.0012 29.3 5.0 52 386-444 39-93 (112)
21 2qfd_A Probable ATP-dependent 36.8 26 0.00088 31.9 3.6 69 432-514 27-98 (145)
22 2e2z_A TIM15; protein import, 21.8 34 0.0011 29.2 1.5 16 499-514 38-59 (100)
No 1
>3m65_A ATP-dependent protease LA 1; coiled-coil, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; 2.60A {Bacillus subtilis}
Probab=99.95 E-value=7.7e-27 Score=225.81 Aligned_cols=112 Identities=26% Similarity=0.415 Sum_probs=101.3
Q ss_pred CeeeeEEEEeeCCceecCCCceeEEecChhHHHHHHHHHhcCCCCcEEEEEEeecCCC---CCCcccccceeEEEEEEEE
Q 009302 82 GAILTLPLFYLDGVVLFPEATLPLRVIKPNFIAAAERALSQVDVPYTIGVVRVFREPD---NGRITFATIGTTAEIRQYR 158 (538)
Q Consensus 82 g~~~~LPVlpL~~vVLFPG~tlPL~V~~p~~i~aV~~a~~~~da~~~IgVv~~~k~~~---~~~~~l~~IGT~AeI~~v~ 158 (538)
..+.+|||||++++|||||+++||+|+++++++||++|++++ +.||++++ ++.. ++.+++|.|||+|+|.++.
T Consensus 4 ~~~~~lPl~PLr~~vlfPg~~~pL~V~~~r~~~~v~~a~~~~---~~i~lv~q-~~~~~~~p~~~~l~~vGt~a~I~~~~ 79 (209)
T 3m65_A 4 ELKRSIPLLPLRGLLVYPTMVLHLDVGRDKSVQALEQAMMHD---HMIFLATQ-QDISIDEPGEDEIFTVGTYTKIKQML 79 (209)
T ss_dssp CEEEEEEEEEESSCCCCTTCEEEEEECSHHHHHHHHHHTTTT---SEEEEEEB-SSTTCSSCCGGGBCSEEEEEEEEEEE
T ss_pred CCCCceEEEEeCCccccCCccEEEEECCHHHHHHHHHHHhcC---CEEEEEEe-cCCCcCCCCcchhhheeEEEEEEEEE
Confidence 345789999999999999999999999999999999999875 78999987 5433 4457899999999999999
Q ss_pred ECCCCcEEEEEEEeEEEEEeeeeeccCCcceEEEEEecCC
Q 009302 159 RLEDGSLNVVTRGQQRFRLRRRWIDVEGVPCGEIQIIQED 198 (538)
Q Consensus 159 ~l~DGsl~V~v~G~qRfrI~~~~~~~dg~l~AeVeiL~E~ 198 (538)
+++||+++|+++|.+||+|.+ +.+.+||+.|+|+.++|.
T Consensus 80 ~l~dG~~~v~v~G~~R~ri~~-~~~~~~~~~a~v~~~~~~ 118 (209)
T 3m65_A 80 KLPNGTIRVLVEGLKRAHIVK-YNEHEDYTSVDIQLIHED 118 (209)
T ss_dssp ECTTSCEEEEEEEEEEEEEEE-EEECSSSEEEEEEECCCC
T ss_pred ECCCCeEEEEEEEEEEEEEEE-EEcCCCcEEEEEEEecCC
Confidence 999999999999999999998 788999999999999774
No 2
>1zbo_A Hypothetical protein BPP1347; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.60A {Bordetella parapertussis} SCOP: b.122.1.10
Probab=99.94 E-value=2.2e-26 Score=222.74 Aligned_cols=109 Identities=28% Similarity=0.444 Sum_probs=97.6
Q ss_pred eeEEEEeeCCceecCCCceeEEecChhHHHHHHHHHhcCCCCcEEEEEEeecCCC----C-CCcccccceeEEEEEEEEE
Q 009302 85 LTLPLFYLDGVVLFPEATLPLRVIKPNFIAAAERALSQVDVPYTIGVVRVFREPD----N-GRITFATIGTTAEIRQYRR 159 (538)
Q Consensus 85 ~~LPVlpL~~vVLFPG~tlPL~V~~p~~i~aV~~a~~~~da~~~IgVv~~~k~~~----~-~~~~l~~IGT~AeI~~v~~ 159 (538)
.+|||||| ++|||||+++||+|++|++++||++|++++ +.||++++ ++.. + ..+++|.|||+|+|.++.+
T Consensus 2 ~~lPl~PL-~~vlfPg~~~pL~V~~~r~~~~v~~a~~~~---~~~glv~~-~~~~~~~~~~~~~dl~~vGt~a~I~~~~~ 76 (210)
T 1zbo_A 2 AEIPLFPL-SNALFPAGVLRLRVFEIRYLDMVRRCIADG---SEFGVVVL-EQGTEVRRPDGREVLARAGTMARIDHWEA 76 (210)
T ss_dssp CEEEEEEE-SSCCCTTBEEEEEECSTTTHHHHHHHHHTT---CCEEEEEE-SSSCSSCCSSCCCCEEEEEEEEEEEEEEC
T ss_pred cEeeEEec-CeeecCCCceeeEECCHHHHHHHHHHHhcC---CcEEEEEe-CCCcccCcccccCchhceEEEEEEEEEEe
Confidence 46999999 999999999999999999999999999875 77999998 4322 2 2467999999999999999
Q ss_pred CCCCcEEEEEEEeEEEEEeeeeeccCCcceEEEEEecCC
Q 009302 160 LEDGSLNVVTRGQQRFRLRRRWIDVEGVPCGEIQIIQED 198 (538)
Q Consensus 160 l~DGsl~V~v~G~qRfrI~~~~~~~dg~l~AeVeiL~E~ 198 (538)
++||+++|+++|.+||+|.+.+.+.+||+.|+|++++|.
T Consensus 77 lpdG~~~v~v~G~~R~rI~~~~~~~~~y~~a~ve~l~~~ 115 (210)
T 1zbo_A 77 PMPALLELACTGTGRFRLHACTQGKYGLWTGQAEPVPDD 115 (210)
T ss_dssp SSTTCEEEEEEEEEEEEEEEEEECGGGCEEEEEEEECCC
T ss_pred CCCceEEEEEEEEEEEEEEEEeecCCCcEEEEEEEcCCC
Confidence 999999999999999999765788899999999999874
No 3
>3ljc_A ATP-dependent protease LA; LON N-domain, allosteric enzyme, ATP-binding, DNA-binding, H nucleotide-binding, serine protease, stress respo; 2.60A {Escherichia coli}
Probab=99.94 E-value=3.8e-26 Score=227.39 Aligned_cols=111 Identities=27% Similarity=0.384 Sum_probs=100.0
Q ss_pred eeeeEEEEeeCCceecCCCceeEEecChhHHHHHHHHHhcCCCCcEEEEEEeecCCC---CCCcccccceeEEEEEEEEE
Q 009302 83 AILTLPLFYLDGVVLFPEATLPLRVIKPNFIAAAERALSQVDVPYTIGVVRVFREPD---NGRITFATIGTTAEIRQYRR 159 (538)
Q Consensus 83 ~~~~LPVlpL~~vVLFPG~tlPL~V~~p~~i~aV~~a~~~~da~~~IgVv~~~k~~~---~~~~~l~~IGT~AeI~~v~~ 159 (538)
.+.+||||||+++|||||+++||+|++|+|++||++|++++ +.||++++ ++.. ++.+++|.|||+|+|.++.+
T Consensus 14 ~~~~lPl~PLr~~VlfPg~~~pL~I~~~r~~~~v~~a~~~~---~~~~lv~q-~~~~~~~p~~~~l~~vGt~a~I~~~~~ 89 (252)
T 3ljc_A 14 ERIEIPVLPLRDVVVYPHMVIPLFVGREKSIRCLEAAMDHD---KKIMLVAQ-KEASTDEPGVNDLFTVGTVASILQMLK 89 (252)
T ss_dssp CCCCCEEEEESSCCCCBTCEEEEEECCTTTHHHHHHHHTTT---TEEEEEEB-CSSCCSSCCSSSBCSEEEEEEECCCBC
T ss_pred CCCceeEEEeCCccccCCcceEEEECCHHHHHHHHHHHhcC---CEEEEEEe-cCCCcCCCCccchhheeEEEEEEEEEE
Confidence 45679999999999999999999999999999999999875 68999987 5433 45678999999999999999
Q ss_pred CCCCcEEEEEEEeEEEEEeeeeeccCCcceEEEEEecCC
Q 009302 160 LEDGSLNVVTRGQQRFRLRRRWIDVEGVPCGEIQIIQED 198 (538)
Q Consensus 160 l~DGsl~V~v~G~qRfrI~~~~~~~dg~l~AeVeiL~E~ 198 (538)
++||+++|+++|.+||+|.+ +.+.+||+.|+|+++++.
T Consensus 90 lpdG~~~v~v~G~~R~rI~~-~~~~~~~~~a~ve~l~d~ 127 (252)
T 3ljc_A 90 LPDGTVKVLVEGLQRARISA-LSDNGEHFSAKAEYLESP 127 (252)
T ss_dssp CTTSCEEEEEEEEEEEECSE-EEEETTEEEEECCCCCCC
T ss_pred CCCCeEEEEEEEEEEEEEEE-EEcCCCcEEEEEEeecCC
Confidence 99999999999999999997 778899999999988764
No 4
>2ane_A ATP-dependent protease LA; LONN119, LON protease, hydrolase; 2.03A {Escherichia coli} SCOP: b.122.1.10
Probab=99.89 E-value=2e-22 Score=181.17 Aligned_cols=115 Identities=27% Similarity=0.363 Sum_probs=98.1
Q ss_pred cccCCCeeeeEEEEeeCCceecCCCceeEEecChhHHHHHHHHHhcCCCCcEEEEEEeecCCC---CCCcccccceeEEE
Q 009302 77 AFLEGGAILTLPLFYLDGVVLFPEATLPLRVIKPNFIAAAERALSQVDVPYTIGVVRVFREPD---NGRITFATIGTTAE 153 (538)
Q Consensus 77 ~~le~g~~~~LPVlpL~~vVLFPG~tlPL~V~~p~~i~aV~~a~~~~da~~~IgVv~~~k~~~---~~~~~l~~IGT~Ae 153 (538)
...+++.+.+||||||+++|||||+++||.|+++++++||++|++++ +.||++++ ++.. ++.+++|.|||+|+
T Consensus 8 ~~~~~~~p~~lPl~PLr~~vlfPg~~~pL~V~~~r~i~~v~~a~~~~---~~i~lv~~-k~~~~~~p~~~dl~~vGt~a~ 83 (125)
T 2ane_A 8 MNPERSERIEIPVLPLRDVVVYPHMVIPLFVGREKSIRCLEAAMDHD---KKIMLVAQ-KEASTDEPGVNDLFTVGTVAS 83 (125)
T ss_dssp -------CEEEEEEEESSCCCCTTCEEEEEECCHHHHHHHHHHHTTT---SEEEEEEB-CTTCCSSCCGGGBCSEEEEEE
T ss_pred cCcccCCCCeEEEEEeCCeeeCCCccEEEEECCHHHHHHHHHHHhcC---CEEEEEEe-cCCCccCCCccchhccEEEEE
Confidence 34466777889999999999999999999999999999999999875 67999887 5432 44578999999999
Q ss_pred EEEEEECCCCcEEEEEEEeEEEEEeeeeeccCCcceEEEEEec
Q 009302 154 IRQYRRLEDGSLNVVTRGQQRFRLRRRWIDVEGVPCGEIQIIQ 196 (538)
Q Consensus 154 I~~v~~l~DGsl~V~v~G~qRfrI~~~~~~~dg~l~AeVeiL~ 196 (538)
|.++.+++||+++|+++|.+||+|.+ +.+.+||+.|+|++++
T Consensus 84 I~~~~~lpdG~~~ilv~G~~R~rI~~-~~~~~~~~~a~V~~l~ 125 (125)
T 2ane_A 84 ILQMLKLPDGTVKVLVEGLQRARISA-LSDNGEHFSAKAEYLE 125 (125)
T ss_dssp EEEEEECTTSCEEEEEEEEEEEEEEE-EEECSSSEEEEEEEC-
T ss_pred EEEEeeCCCCcEEEEEEEEEEEEEEE-EEcCCCcEEEEEEECC
Confidence 99999999999999999999999998 8889999999999874
No 5
>3e0o_A Peptide methionine sulfoxide reductase MSRB; oxidoreductase; 2.60A {Bacillus subtilis} SCOP: b.88.1.3 PDB: 1xm0_A 2kzn_A
Probab=83.86 E-value=1.1 Score=40.79 Aligned_cols=66 Identities=17% Similarity=0.200 Sum_probs=42.9
Q ss_pred CceecccccccccCCCceeeeccCCceeEEeCCCCceEEEEEEeeecCceecCCCCcccccCCCCceEEEeCccCCCCcc
Q 009302 431 DLVRCKTCKTAIAKRSDMLVMSSEGPLGAYVNPHGCVHEILTLNKANGLALYGPAETEYSWFPGYAWTVASCSICETHMG 510 (538)
Q Consensus 431 ~~l~C~~C~~~Ia~~~~~~~ms~~g~~~~~vNP~G~v~ei~t~~~a~~~~~~G~ps~e~SWFpGYaW~ia~C~~C~~HlG 510 (538)
.+.+|+.|++++....+-|. +..-.-+|..|--- .|... .+.|+ |..=|-+.|++|++|||
T Consensus 41 G~Y~C~~Cg~pLF~S~~Kfd--Sg~GWPSF~~pi~~--~v~~~-------------~D~s~--gm~RtEV~C~~Cg~HLG 101 (144)
T 3e0o_A 41 GLYVDIVSGKPLFTSKDKFD--SQCGWPSFTKPIEE--EVEEK-------------LDTSH--GMIRTEVRSRTADSHLG 101 (144)
T ss_dssp EEEEETTTCCEEEETTTBCC--CTTSSCEESCCSTT--TEEEE-------------EECCT--TSCEEEEEETTTCCEEE
T ss_pred EEEEeCCCCcccccCccccc--CCCCCcccCchhcc--ceEEe-------------ecCCC--CceEEEEEcCCCCCccC
Confidence 46899999999998887554 22234567666421 11111 11122 55556699999999999
Q ss_pred eeEEe
Q 009302 511 WLFTA 515 (538)
Q Consensus 511 W~F~a 515 (538)
--|.-
T Consensus 102 HVF~D 106 (144)
T 3e0o_A 102 HVFND 106 (144)
T ss_dssp EEESC
T ss_pred CccCC
Confidence 99963
No 6
>3hcg_A Peptide methionine sulfoxide reductase MSRA/MSRB; PILB, methionine sulfoxide reductase B, reduced form, disulfide bond; 1.82A {Neisseria meningitidis serogroup A} SCOP: b.88.1.3 PDB: 3hch_A* 1l1d_A
Probab=83.38 E-value=1.1 Score=40.92 Aligned_cols=65 Identities=15% Similarity=0.226 Sum_probs=43.6
Q ss_pred CceecccccccccCCCceeeeccCCceeEEeCCC--CceEEEEEEeeecCceecCCCCcccccCCCCceEEEeCccCCCC
Q 009302 431 DLVRCKTCKTAIAKRSDMLVMSSEGPLGAYVNPH--GCVHEILTLNKANGLALYGPAETEYSWFPGYAWTVASCSICETH 508 (538)
Q Consensus 431 ~~l~C~~C~~~Ia~~~~~~~ms~~g~~~~~vNP~--G~v~ei~t~~~a~~~~~~G~ps~e~SWFpGYaW~ia~C~~C~~H 508 (538)
.+.+|+.|+.++....+-|. |. .-.-+|..|- +.|-+.. +.|+ |..=+-+.|++|++|
T Consensus 42 G~Y~C~~Cg~pLF~S~~KFd-Sg-~GWPSF~~pi~~~~v~~~~----------------D~s~--gm~RtEV~C~~Cg~H 101 (146)
T 3hcg_A 42 GIYVDVVSGEPLFSSADKYD-SG-CGWPSFTRPIDAKSVTEHD----------------DFSY--NMRRTEVRSHAADSH 101 (146)
T ss_dssp EEEEETTTCCEEEEGGGEEC-CS-SSSCEESSCSSGGGEEEEE----------------EEET--TEEEEEEEETTTCCE
T ss_pred EEEEecCCCcccccCccccc-CC-CCChhhccccCCCceEEee----------------cCCC--CcEEEEEEeCCCCCc
Confidence 47899999999999888665 22 2355676664 3332221 1122 344466899999999
Q ss_pred cceeEEe
Q 009302 509 MGWLFTA 515 (538)
Q Consensus 509 lGW~F~a 515 (538)
||=-|.-
T Consensus 102 LGHVF~D 108 (146)
T 3hcg_A 102 LGHVFPD 108 (146)
T ss_dssp EEEEESC
T ss_pred cCceeCC
Confidence 9999953
No 7
>3cxk_A Methionine-R-sulfoxide reductase; structural genomics, MSRB, oxidoreductase, MIC labcard, PSI-2, protein structure initiative; 1.70A {Burkholderia pseudomallei strain} PDB: 3cez_A
Probab=82.40 E-value=1 Score=41.81 Aligned_cols=65 Identities=23% Similarity=0.514 Sum_probs=43.5
Q ss_pred CceecccccccccCCCceeeeccCCceeEEeCCC--CceEEEEEEeeecCceecCCCCcccccCCCCceEEEeCccCCCC
Q 009302 431 DLVRCKTCKTAIAKRSDMLVMSSEGPLGAYVNPH--GCVHEILTLNKANGLALYGPAETEYSWFPGYAWTVASCSICETH 508 (538)
Q Consensus 431 ~~l~C~~C~~~Ia~~~~~~~ms~~g~~~~~vNP~--G~v~ei~t~~~a~~~~~~G~ps~e~SWFpGYaW~ia~C~~C~~H 508 (538)
.+.+|+.|+.++....+-|. | ..-.-+|..|- +.|-+..- .|+ |..=+-+.|+.|+.|
T Consensus 72 GiY~C~~Cg~pLF~S~~KFd-S-GcGWPSF~~pi~~~~V~~~~D----------------~s~--gm~RtEV~C~~Cg~H 131 (164)
T 3cxk_A 72 GIYHCVVCGTALFESGAKYH-S-GCGWPSYFKPIDGEVIDEKMD----------------YTH--GMTRVEVRCNQCGAH 131 (164)
T ss_dssp EEEEETTTCCEEEEGGGBCC-C-CSSSCEESSCSSTTSEEEEEE----------------CGG--GCCEEEEEETTTCCE
T ss_pred eEEEccCCCccccCCchhcc-C-CCCCcccCcccCCCceEEeEC----------------CCC--CcEEEEEEeCCCCCc
Confidence 46899999999998887653 2 22245676663 22222221 222 455566999999999
Q ss_pred cceeEEe
Q 009302 509 MGWLFTA 515 (538)
Q Consensus 509 lGW~F~a 515 (538)
||=-|.-
T Consensus 132 LGHVF~D 138 (164)
T 3cxk_A 132 LGHVFED 138 (164)
T ss_dssp EEEEESC
T ss_pred cCcccCC
Confidence 9999963
No 8
>3hcj_A MSRB, peptide methionine sulfoxide reductase; methionine sulfoxide reductase B, oxidized form, oxidoreductase; 1.66A {Xanthomonas campestris PV} PDB: 3hci_A*
Probab=80.89 E-value=0.86 Score=41.95 Aligned_cols=65 Identities=23% Similarity=0.541 Sum_probs=39.7
Q ss_pred CceecccccccccCCCceeeeccCCceeEEeCCC--CceEEEEEEeeecCceecCCCCcccccCCCCceEEEeCccCCCC
Q 009302 431 DLVRCKTCKTAIAKRSDMLVMSSEGPLGAYVNPH--GCVHEILTLNKANGLALYGPAETEYSWFPGYAWTVASCSICETH 508 (538)
Q Consensus 431 ~~l~C~~C~~~Ia~~~~~~~ms~~g~~~~~vNP~--G~v~ei~t~~~a~~~~~~G~ps~e~SWFpGYaW~ia~C~~C~~H 508 (538)
.+.+|+.|+.++....+-|. |.-| .-+|..|- +.|-+ ..+.|+ |+.=+-+.|++|+.|
T Consensus 49 G~Y~C~~Cg~pLF~S~~KFd-Sg~G-WPSF~~pi~~~~v~~----------------~~D~s~--gm~RtEV~C~~Cg~H 108 (154)
T 3hcj_A 49 GVYTCRLCGLPLFRSNAKFD-SGTG-WPSFFAPYDPAHVRE----------------IRDTSY--GMIRTEIVCARCDSH 108 (154)
T ss_dssp EEEEETTTCCEEEEECTTCC-CCTT-SSTTEEESCGGGEEE----------------ECCTTT--TTSCEEEEETTTCCE
T ss_pred EEEEccCCCCccccCccccc-CCCC-CcccccccCccceEE----------------eecCCC--CceEEEEEeCCCCCc
Confidence 46899999999988777554 1111 22333221 11111 012222 555577999999999
Q ss_pred cceeEEe
Q 009302 509 MGWLFTA 515 (538)
Q Consensus 509 lGW~F~a 515 (538)
||=-|.-
T Consensus 109 LGHVF~D 115 (154)
T 3hcj_A 109 LGHVFPD 115 (154)
T ss_dssp EEEEESC
T ss_pred cCCccCC
Confidence 9999963
No 9
>3mao_A Methionine-R-sulfoxide reductase B1; oxidoreductase, structural genomics consortium, SGC, cytoplasm, metal-binding, nucleus, selenocysteine, zinc; HET: MLI; 1.42A {Homo sapiens}
Probab=78.54 E-value=1.9 Score=37.25 Aligned_cols=63 Identities=16% Similarity=0.267 Sum_probs=41.0
Q ss_pred CceecccccccccCCCceeeeccCCceeEEeCCC--CceEEEEEEeeecCceecCCCCcccccCCCCceEEEeCccCCCC
Q 009302 431 DLVRCKTCKTAIAKRSDMLVMSSEGPLGAYVNPH--GCVHEILTLNKANGLALYGPAETEYSWFPGYAWTVASCSICETH 508 (538)
Q Consensus 431 ~~l~C~~C~~~Ia~~~~~~~ms~~g~~~~~vNP~--G~v~ei~t~~~a~~~~~~G~ps~e~SWFpGYaW~ia~C~~C~~H 508 (538)
.+.+|+.|+.++....+-|. | ..-.-+|..|- +.|-+.. . .+ |+.=+-+.|++|+.|
T Consensus 12 G~Y~C~~Cg~pLF~S~~KFd-S-g~GWPSF~~pi~~~~v~~~~-----D------------~~--~~~RtEV~C~~C~~H 70 (105)
T 3mao_A 12 GVYVCAKCGYELFSSRSKYA-H-SSPWPAFTETIHADSVAKRP-----E------------HN--RSEALKVSCGKCGNG 70 (105)
T ss_dssp EEEEETTTCCEEEEGGGEEC-C-SSSSCEESCCSSTTSEEEEE-----C------------TT--STTEEEEEETTTCCE
T ss_pred EEEEcCCCCCccccCCcccC-C-CCCChhhccccCCCceEEEe-----c------------CC--CCCEEEEEeCCCCCc
Confidence 47899999999998888664 2 22355676663 2222110 0 01 123367999999999
Q ss_pred cceeEE
Q 009302 509 MGWLFT 514 (538)
Q Consensus 509 lGW~F~ 514 (538)
||--|.
T Consensus 71 LGHVF~ 76 (105)
T 3mao_A 71 LGHEFL 76 (105)
T ss_dssp EEEEET
T ss_pred cCcccC
Confidence 999994
No 10
>3eqt_A ATP-dependent RNA helicase DHX58; innate immunity, RIG-I-like helicases, viral RNA detection, LGP2/dsRNA complex, ATP-binding, coiled coil; 2.00A {Homo sapiens} PDB: 2w4r_A 2rqa_A
Probab=76.12 E-value=1.1 Score=40.88 Aligned_cols=71 Identities=25% Similarity=0.386 Sum_probs=44.6
Q ss_pred ceecccccccccCCCceeeeccCCceeEEeCCCCceEEEEEEeeecCceecCCCCcccccCCCCceEEEeCccCCCCcce
Q 009302 432 LVRCKTCKTAIAKRSDMLVMSSEGPLGAYVNPHGCVHEILTLNKANGLALYGPAETEYSWFPGYAWTVASCSICETHMGW 511 (538)
Q Consensus 432 ~l~C~~C~~~Ia~~~~~~~ms~~g~~~~~vNP~G~v~ei~t~~~a~~~~~~G~ps~e~SWFpGYaW~ia~C~~C~~HlGW 511 (538)
.|+|+.|...++..+||..+ ++..++-+||.=..+=++-..... .|..---|=|| ..+.|+.|++-.|-
T Consensus 13 kllCrkC~~~~C~g~DIr~i--e~~HhVnv~p~F~~~y~~~~~~~~------~~k~f~d~~~~---g~I~C~~Cgq~WG~ 81 (145)
T 3eqt_A 13 QLLCINCMVAVGHGSDLRKV--EGTHHVNVNPNFSNYYNVSRDPVV------INKVFKDWKPG---GVISCRNCGEVWGL 81 (145)
T ss_dssp EEEETTTCCEEEEGGGEEEE--TTTEEEECCGGGGGGEEEEEEECC------CSSCCSSEEEE---EEEEETTTCCEEEE
T ss_pred EEECCCCCeeEEeccceEEe--ccceEEeeChhheeeEEeccCCCC------CCcccccccCC---cEEEchhhChhhHh
Confidence 69999999999999999887 367888999963222122112221 12221123233 24999999998554
Q ss_pred eE
Q 009302 512 LF 513 (538)
Q Consensus 512 ~F 513 (538)
.-
T Consensus 82 ~m 83 (145)
T 3eqt_A 82 QM 83 (145)
T ss_dssp EE
T ss_pred hE
Confidence 43
No 11
>3e0m_A Peptide methionine sulfoxide reductase MSRA/MSRB 1; fusion, msrab, linker, hinge, cell membrane, membrane, multifunctional enzyme, oxidoreductase; 2.40A {Streptococcus pneumoniae}
Probab=75.78 E-value=2.3 Score=43.40 Aligned_cols=65 Identities=17% Similarity=0.190 Sum_probs=43.5
Q ss_pred CceecccccccccCCCceeeeccCCceeEEeCCC--CceEEEEEEeeecCceecCCCCcccccCCCCceEEEeCccCCCC
Q 009302 431 DLVRCKTCKTAIAKRSDMLVMSSEGPLGAYVNPH--GCVHEILTLNKANGLALYGPAETEYSWFPGYAWTVASCSICETH 508 (538)
Q Consensus 431 ~~l~C~~C~~~Ia~~~~~~~ms~~g~~~~~vNP~--G~v~ei~t~~~a~~~~~~G~ps~e~SWFpGYaW~ia~C~~C~~H 508 (538)
.+.+|+.|+.++....+-|. +....-+|..|- +.+-+. .+.|+ |..=+-+.|++|++|
T Consensus 208 G~Y~c~~cg~pLF~S~~Kfd--Sg~GWPSF~~~i~~~~v~~~----------------~D~s~--gm~RtEv~c~~c~~H 267 (313)
T 3e0m_A 208 GIYVDITTGEPLFFAKDKFA--SGCGWPSFSRPLSKELIHYY----------------KDLSH--GMERIEVRSRSGSAH 267 (313)
T ss_dssp EEEEETTTCCEEEEGGGBCC--CCSSSCEESSCSSGGGEEEE----------------EECCT--TCCEEEEEESSSCCE
T ss_pred eEEEecCCCccccCCCcccc--CCCCCcccCcccCCCceEEe----------------ecCCC--CcEEEEEECCCCCCc
Confidence 46899999999998887554 222355676664 222111 12233 555577999999999
Q ss_pred cceeEEe
Q 009302 509 MGWLFTA 515 (538)
Q Consensus 509 lGW~F~a 515 (538)
||=-|.-
T Consensus 268 LGHVF~D 274 (313)
T 3e0m_A 268 LGHVFTD 274 (313)
T ss_dssp EEEEESC
T ss_pred cCcccCC
Confidence 9999963
No 12
>2kao_A Methionine-R-sulfoxide reductase B1; mouse reduced methionine sulfoxide reductase B1 (MSRB1) (SEC95Cys mutant, selenocysteine; NMR {Mus musculus} PDB: 2kv1_A
Probab=75.66 E-value=2.7 Score=37.40 Aligned_cols=64 Identities=16% Similarity=0.277 Sum_probs=40.5
Q ss_pred CCceecccccccccCCCceeeeccCCceeEEeCCC--CceEEEEEEeeecCceecCCCCcccccCCCCceEEEeCccCCC
Q 009302 430 FDLVRCKTCKTAIAKRSDMLVMSSEGPLGAYVNPH--GCVHEILTLNKANGLALYGPAETEYSWFPGYAWTVASCSICET 507 (538)
Q Consensus 430 ~~~l~C~~C~~~Ia~~~~~~~ms~~g~~~~~vNP~--G~v~ei~t~~~a~~~~~~G~ps~e~SWFpGYaW~ia~C~~C~~ 507 (538)
..+..|+.|++++....+-|. | ..-.-+|..|- +.|-+.. -. + |+.=|-+.|++|+.
T Consensus 18 ~GiY~C~~Cg~pLF~S~~KFd-S-G~GWPSF~~pi~~~~v~~~~----D~------------~---~~~RtEV~C~~Cg~ 76 (124)
T 2kao_A 18 PGVYVCAKCSYELFSSHSKYA-H-SSPWPAFTETIHPDSVTKCP----EK------------N---RPEALKVSCGKCGN 76 (124)
T ss_dssp CCEEEESSSCCCCCCTTTSCC-C-CCSSCCBSCCCCCSSCEEEE----CS------------S---CTTCEEEECTTTTC
T ss_pred CEEEEeCCCCCccccCccccc-C-CCCChhhCccCCccceEEEe----cC------------C---CCCEEEEEeCCCCC
Confidence 357899999999999887554 1 12244565553 2221111 00 0 12226799999999
Q ss_pred CcceeEE
Q 009302 508 HMGWLFT 514 (538)
Q Consensus 508 HlGW~F~ 514 (538)
|||=-|.
T Consensus 77 HLGHVF~ 83 (124)
T 2kao_A 77 GLGHEFL 83 (124)
T ss_dssp CCEEECC
T ss_pred cCCccCC
Confidence 9999994
No 13
>2l1u_A MSRB2, methionine-R-sulfoxide reductase B2, mitochondria; methionine sulfoxide reductase, oxidoreductase; NMR {Mus musculus}
Probab=73.75 E-value=2.8 Score=38.17 Aligned_cols=65 Identities=18% Similarity=0.435 Sum_probs=42.3
Q ss_pred CceecccccccccCCCceeeeccCCceeEEeCCCC---------ceEEEEEEeeecCceecCCCCcccccCCCCceEEEe
Q 009302 431 DLVRCKTCKTAIAKRSDMLVMSSEGPLGAYVNPHG---------CVHEILTLNKANGLALYGPAETEYSWFPGYAWTVAS 501 (538)
Q Consensus 431 ~~l~C~~C~~~Ia~~~~~~~ms~~g~~~~~vNP~G---------~v~ei~t~~~a~~~~~~G~ps~e~SWFpGYaW~ia~ 501 (538)
.+.+|+.|+.++....+-|. |. .-.-+|..|-. .|-+ ..+.|+ |..=+-+.
T Consensus 36 G~Y~C~~Cg~pLF~S~~KFd-Sg-~GWPSF~~pi~~~~~~~~~~~V~~----------------~~D~s~--gm~RtEV~ 95 (143)
T 2l1u_A 36 GMYHCVCCDSPLFSSEKKYC-SG-TGWPSFSEAYGSKGSDESHTGILR----------------RLDTSL--GCPRMEVV 95 (143)
T ss_dssp EEEEESSSSCEEEEGGGBCT-TT-TCCSBBSSCCSCCTTHHHHTCEEE----------------EEECTT--SSCEEEEE
T ss_pred eEEEeCCCCCeeecCccccc-CC-CCChhhchhhccccccCCCCceEE----------------eecccC--CceEEEEE
Confidence 46799999999988887554 22 22445655542 1111 112233 45556699
Q ss_pred CccCCCCcceeEEe
Q 009302 502 CSICETHMGWLFTA 515 (538)
Q Consensus 502 C~~C~~HlGW~F~a 515 (538)
|+.|++|||=-|.-
T Consensus 96 C~~Cg~HLGHVF~D 109 (143)
T 2l1u_A 96 CKQCEAHLGHVFPD 109 (143)
T ss_dssp ESSSCCCCEEEECC
T ss_pred ECCCCCcCCcccCC
Confidence 99999999999964
No 14
>2k8d_A Peptide methionine sulfoxide reductase MSRB; thermophilic, Zn binding, metal-binding, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=71.59 E-value=1.1 Score=41.16 Aligned_cols=67 Identities=18% Similarity=0.396 Sum_probs=42.8
Q ss_pred CceecccccccccCCCceeeeccCCceeEEeCCCCceEEEEEEeeecCceecCCCCcccccCCCCceEEEeCccCCCCcc
Q 009302 431 DLVRCKTCKTAIAKRSDMLVMSSEGPLGAYVNPHGCVHEILTLNKANGLALYGPAETEYSWFPGYAWTVASCSICETHMG 510 (538)
Q Consensus 431 ~~l~C~~C~~~Ia~~~~~~~ms~~g~~~~~vNP~G~v~ei~t~~~a~~~~~~G~ps~e~SWFpGYaW~ia~C~~C~~HlG 510 (538)
.+.+|+.|+.++....+-|. |. .-.-+|..|--- ..+. -..+.|+ |..=+-+.|+.|++|||
T Consensus 60 G~Y~C~~Cg~pLF~S~~KFd-Sg-~GWPSF~~pi~~----------~~V~----~~~D~s~--gm~RtEV~C~~Cg~HLG 121 (151)
T 2k8d_A 60 GIYRCICCGTDLFDSETKFD-SG-TGWPSFYDVVSE----------HNIK----LREDRSL--GMVRCEVLCARCDAHLG 121 (151)
T ss_dssp SEEEETTTTEEEEEGGGSCC-ST-TCCSEESCCSCT----------TSEE----CCCCBTT--SSCEEEEEETTEEEEEE
T ss_pred EEEEecCCCCcccCCccccc-CC-CCCcccCcccCC----------CceE----EeeCCCC--CceEEEEEeCCCCCcCC
Confidence 47899999999988877553 21 224456555310 0111 1122333 55667799999999999
Q ss_pred eeEEe
Q 009302 511 WLFTA 515 (538)
Q Consensus 511 W~F~a 515 (538)
--|.-
T Consensus 122 HVF~D 126 (151)
T 2k8d_A 122 HVFDD 126 (151)
T ss_dssp EEEEC
T ss_pred cccCC
Confidence 99974
No 15
>2kv1_A Methionine-R-sulfoxide reductase B1; MSRB1, SELR, metal-binding, nucleus, oxidoreductase, seleniu; NMR {Mus musculus}
Probab=62.84 E-value=6.5 Score=34.92 Aligned_cols=63 Identities=17% Similarity=0.305 Sum_probs=39.3
Q ss_pred CceecccccccccCCCceeeeccCCceeEEeCCC--CceEEEEEEeeecCceecCCCCcccccCCCCceEEEeCccCCCC
Q 009302 431 DLVRCKTCKTAIAKRSDMLVMSSEGPLGAYVNPH--GCVHEILTLNKANGLALYGPAETEYSWFPGYAWTVASCSICETH 508 (538)
Q Consensus 431 ~~l~C~~C~~~Ia~~~~~~~ms~~g~~~~~vNP~--G~v~ei~t~~~a~~~~~~G~ps~e~SWFpGYaW~ia~C~~C~~H 508 (538)
.+.+|+.|+.++....+-|. |. .-.-+|..|- +.+-++-. . + |..=+-+.|++|+.|
T Consensus 19 G~Y~C~~Cg~pLF~S~~Kfd-Sg-~GWPSF~~~i~~~~v~~~~d---~-------------~---~~~r~Ev~C~~Cg~H 77 (124)
T 2kv1_A 19 GVYVCAKCSYELFSSHSKYA-HS-SPWPAFTETIHPDSVTKCPE---K-------------N---RPEALKVSCGKCGNG 77 (124)
T ss_dssp EEEEETTTCCBCCCTTSCCC-CC-SSSCCBSCCCCCSSCEEEEC---S-------------S---STTCEEEECTTTTCC
T ss_pred EEEEecCCCCcccccCCccc-CC-CCCceeecccccceEEEEec---c-------------C---CceEEEEEEecCCCc
Confidence 47899999999999888554 21 2244555553 33221110 0 0 111245899999999
Q ss_pred cceeEE
Q 009302 509 MGWLFT 514 (538)
Q Consensus 509 lGW~F~ 514 (538)
||=-|.
T Consensus 78 LGHVF~ 83 (124)
T 2kv1_A 78 LGHEFL 83 (124)
T ss_dssp CEEECT
T ss_pred cCCccC
Confidence 999995
No 16
>1hxr_A Guanine nucleotide exchange factor MSS4; RAB GTPase, membrane trafficking, Zn binding site, metal binding protein; 1.65A {Rattus norvegicus} SCOP: b.88.1.1 PDB: 1fwq_A 2fu5_A
Probab=55.52 E-value=9.1 Score=33.46 Aligned_cols=21 Identities=29% Similarity=0.624 Sum_probs=16.5
Q ss_pred eEEEeCccCC-CCcceeEEecC
Q 009302 497 WTVASCSICE-THMGWLFTATK 517 (538)
Q Consensus 497 W~ia~C~~C~-~HlGW~F~a~~ 517 (538)
=+...|+-|. -.|||+..+.+
T Consensus 81 ~KyL~CadCe~GPiG~~~~~~~ 102 (115)
T 1hxr_A 81 VKFLVCADCEIGPIGWHCLDDK 102 (115)
T ss_dssp EEEEECTTTCCBCSEEEETTST
T ss_pred cCEecccCCCCCCcEeecCCCC
Confidence 4568899995 58999997643
No 17
>4a2v_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 1.44A {Anas platyrhynchos} PDB: 4a2x_A
Probab=47.87 E-value=8.5 Score=34.46 Aligned_cols=68 Identities=13% Similarity=0.234 Sum_probs=44.1
Q ss_pred ceecccccccccCCCceeeeccCCceeEEeCCCCceEEEEEEeeecCceecCCCCcccccCCCCc-eEEEeCc--cCCCC
Q 009302 432 LVRCKTCKTAIAKRSDMLVMSSEGPLGAYVNPHGCVHEILTLNKANGLALYGPAETEYSWFPGYA-WTVASCS--ICETH 508 (538)
Q Consensus 432 ~l~C~~C~~~Ia~~~~~~~ms~~g~~~~~vNP~G~v~ei~t~~~a~~~~~~G~ps~e~SWFpGYa-W~ia~C~--~C~~H 508 (538)
.|+|+.|...++..+||..+. +..|+-+||.=..+-++ ...+ .|.. |.+|. =..+.|+ .|++-
T Consensus 7 kllCrkC~~~vC~g~DIr~ie--~~HhVnv~p~F~~~y~~--~~~~------~~k~----f~d~~~~g~I~C~~~~Cg~~ 72 (131)
T 4a2v_A 7 NLLCGKCKAYACSTDDIRIIK--DSHHIVLGEAFKERYTT--KPHK------KPMQ----FDGFEKKSKMYCRNNNCQHD 72 (131)
T ss_dssp EEEETTTCCEEEEGGGEEEET--TTEEEECSSGGGGGEEE--EECC------CCCC----TTSEEEEEEEEESCTTTCCE
T ss_pred EEEccCCCeeEEeccceEEee--cceEEeeChhheeeEEe--cCCC------CCch----hhcccCCcEEEeCccccChh
Confidence 699999999999999998774 66888999963222111 1111 1222 34331 1349999 99998
Q ss_pred cceeE
Q 009302 509 MGWLF 513 (538)
Q Consensus 509 lGW~F 513 (538)
.|=.-
T Consensus 73 WG~~m 77 (131)
T 4a2v_A 73 WGITV 77 (131)
T ss_dssp EEEEE
T ss_pred hhhhE
Confidence 55443
No 18
>3ga3_A Interferon-induced helicase C domain-containing protein 1, MDA5; innate immune receptor, RNA biniding, RLR, alternative splicing, antiviral defense; 1.45A {Homo sapiens} PDB: 2rqb_A
Probab=45.39 E-value=7.7 Score=34.82 Aligned_cols=68 Identities=16% Similarity=0.256 Sum_probs=42.9
Q ss_pred ceecccccccccCCCceeeeccCCceeEEeCCCCceEEEEEEeeecCceecCCCCcccccCCCCce-EEEeCccCCCCcc
Q 009302 432 LVRCKTCKTAIAKRSDMLVMSSEGPLGAYVNPHGCVHEILTLNKANGLALYGPAETEYSWFPGYAW-TVASCSICETHMG 510 (538)
Q Consensus 432 ~l~C~~C~~~Ia~~~~~~~ms~~g~~~~~vNP~G~v~ei~t~~~a~~~~~~G~ps~e~SWFpGYaW-~ia~C~~C~~HlG 510 (538)
.|+|+.|...++..+||..+ ++..++-+||.=..+ .+++ ++|...-+ |.+|.= ..+.|+ |++-.|
T Consensus 12 kllCrkC~~~~C~g~DIR~i--e~~HhVnv~p~F~~~--y~~~--------~~~~~~k~-f~d~~~~g~I~C~-Cgq~WG 77 (133)
T 3ga3_A 12 TFLCKNCSVLACSGEDIHVI--EKMHHVNMTPEFKEL--YIVR--------ENKALQKK-CADYQINGEIICK-CGQAWG 77 (133)
T ss_dssp EEEETTTCCEEEEGGGCEEE--TTTEEECCCTGGGGS--EEEE--------CCTTTCEE-CSSCEEEEEEEET-TSCEEE
T ss_pred EEEccCCCeeEEeccceEEe--ccceEEeeChhheee--EEec--------CCCCccch-hccccCCceEEEe-cCChhh
Confidence 58999999999999999877 366788888852221 1111 22221111 344322 348999 999855
Q ss_pred eeE
Q 009302 511 WLF 513 (538)
Q Consensus 511 W~F 513 (538)
=.-
T Consensus 78 ~~m 80 (133)
T 3ga3_A 78 TMM 80 (133)
T ss_dssp EEE
T ss_pred hhE
Confidence 443
No 19
>3lrr_A Probable ATP-dependent RNA helicase DDX58; innate immunity, viral RNA, RIG-I like receptors, antiviral ATP-binding, helicase, hydrolase; HET: ATP; 2.15A {Homo sapiens} PDB: 3lrn_A* 3og8_A 2rmj_A 3ncu_A*
Probab=44.78 E-value=8.1 Score=34.14 Aligned_cols=68 Identities=13% Similarity=0.250 Sum_probs=42.9
Q ss_pred ceecccccccccCCCceeeeccCCceeEEeCCCCceEEEEEEeeecCceecCCCCcccccCCCCc-eEEEeCc--cCCCC
Q 009302 432 LVRCKTCKTAIAKRSDMLVMSSEGPLGAYVNPHGCVHEILTLNKANGLALYGPAETEYSWFPGYA-WTVASCS--ICETH 508 (538)
Q Consensus 432 ~l~C~~C~~~Ia~~~~~~~ms~~g~~~~~vNP~G~v~ei~t~~~a~~~~~~G~ps~e~SWFpGYa-W~ia~C~--~C~~H 508 (538)
.|+|+.|...++..+|+..+. +..|+-+||.=..+ ..+ ...+ .|.. |.+|. =..+.|+ .|++-
T Consensus 5 ~llC~kC~~~~C~g~DIr~ie--~~HhVnv~p~F~~~-y~~-~~~~------~~k~----f~d~~~~g~I~C~~~~Cg~~ 70 (121)
T 3lrr_A 5 KLLCRKCKALACYTADVRVIE--ESHYTVLGDAFKEC-FVS-RPHP------KPKQ----FSSFEKRAKIFCARQNCSHD 70 (121)
T ss_dssp EEEETTTCCEEEEGGGEEEET--TTEEEECSHHHHTT-EEE-EECS------SCCE----ETTEEEEEEEEECSTTTCCE
T ss_pred EEECCCCCeEEEeccceEEee--cceEEeeChhheee-EEe-cCCC------CCch----hhcccCCcEEEeCccccChh
Confidence 589999999999999988774 66788888852111 111 1111 1222 33331 1349999 99998
Q ss_pred cceeE
Q 009302 509 MGWLF 513 (538)
Q Consensus 509 lGW~F 513 (538)
.|=.-
T Consensus 71 WG~~m 75 (121)
T 3lrr_A 71 WGIHV 75 (121)
T ss_dssp EEEEE
T ss_pred hhheE
Confidence 55443
No 20
>2kq9_A DNAK suppressor protein; zinc binding protein, structural genomics, PSI-2, protein ST initiative; NMR {Agrobacterium tumefaciens str}
Probab=40.81 E-value=35 Score=29.26 Aligned_cols=52 Identities=17% Similarity=0.185 Sum_probs=30.1
Q ss_pred CCCCcchhhhhhhc---CCCCHHHhhhhhccCChhHHHHHHHHHHhcCCceecccccccccC
Q 009302 386 VKKPDLLSFYIASK---IPVSESTRQELLEIDGVSYRLRREIELLESFDLVRCKTCKTAIAK 444 (538)
Q Consensus 386 ~~~P~~~Sywva~~---lpl~~~~r~~LL~~d~~~~RL~~el~~l~~~~~l~C~~C~~~Ia~ 444 (538)
..||.+.+.-.... +-+....|.+|-+|+.+..|+ ...+...|..||.+|..
T Consensus 39 ~~D~~D~a~~~~~~~~~~al~~r~r~~L~~i~~Al~ri-------~~g~yg~C~~Cg~~I~~ 93 (112)
T 2kq9_A 39 NPDDEDRASERSNDEVLDELGQVGQDELRAIDAALARI-------ASGTFGTCVKCGKRISE 93 (112)
T ss_dssp SCSSSCCCCTTCCCCCCTTSCHHHHHHHHHHHHHHHHH-------HHTCCSEETTTTEECCH
T ss_pred CCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------hCCCcCeeCCCCCcccH
Confidence 34555544432222 334455555555555554443 45678899999999964
No 21
>2qfd_A Probable ATP-dependent RNA helicase DDX58; zinc finger, alternative splicing, antiviral defense, ATP- binding, hydrolase, immune response; 2.70A {Homo sapiens} PDB: 2qfb_A
Probab=36.75 E-value=26 Score=31.88 Aligned_cols=69 Identities=13% Similarity=0.191 Sum_probs=45.7
Q ss_pred ceecccccccccCCCceeeeccCCceeEEeCCCCceEEEEEEeeecCceecCCCCcccccCCCC-ceEEEeCc--cCCCC
Q 009302 432 LVRCKTCKTAIAKRSDMLVMSSEGPLGAYVNPHGCVHEILTLNKANGLALYGPAETEYSWFPGY-AWTVASCS--ICETH 508 (538)
Q Consensus 432 ~l~C~~C~~~Ia~~~~~~~ms~~g~~~~~vNP~G~v~ei~t~~~a~~~~~~G~ps~e~SWFpGY-aW~ia~C~--~C~~H 508 (538)
.|+|+.|...++..+||..+. +..++-+||.=...-++. ..+ .|-. |.+| .=..+.|. .|++-
T Consensus 27 ~llCrkC~~~~C~g~DIrvie--~~HhV~v~p~F~~~y~v~--~~~------~~k~----f~d~~~~g~I~C~~~~Cg~~ 92 (145)
T 2qfd_A 27 KLLCRKCKALACYTADVRVIE--ECHYTVLGDAFKECFVSR--PHP------KPKQ----FSSFEKRAKIFCARQNCSHD 92 (145)
T ss_dssp EEEETTTCCEEEEGGGEEEET--TTEEEECSTTGGGTEEEE--ECS------SCCC----CSSEEEEEEEEECSTTTCCE
T ss_pred EEEccCCCeeEEcccceeEec--CCcEEecCcCceeeEEEc--CCc------ccch----hhceeCCceEEeCCcccCcc
Confidence 699999999999999998884 678888999632211111 111 1211 5555 22469999 99997
Q ss_pred cceeEE
Q 009302 509 MGWLFT 514 (538)
Q Consensus 509 lGW~F~ 514 (538)
.|=.-.
T Consensus 93 WG~~m~ 98 (145)
T 2qfd_A 93 WGIHVK 98 (145)
T ss_dssp EEEEEE
T ss_pred hhceEE
Confidence 775543
No 22
>2e2z_A TIM15; protein import, zinc finger, protein transport, chaperone regulator; NMR {Saccharomyces cerevisiae}
Probab=21.84 E-value=34 Score=29.24 Aligned_cols=16 Identities=25% Similarity=0.696 Sum_probs=12.7
Q ss_pred EEeCccCCC------CcceeEE
Q 009302 499 VASCSICET------HMGWLFT 514 (538)
Q Consensus 499 ia~C~~C~~------HlGW~F~ 514 (538)
|+.|+.|.+ ||||-..
T Consensus 38 iv~C~gC~n~HlIaDnLgwF~d 59 (100)
T 2e2z_A 38 LISCPHCKVRHLIADHLKIFHD 59 (100)
T ss_dssp EEECTTTCCEEESCCSSCSGGG
T ss_pred EEEcCCCccceEeehhhhhhcc
Confidence 688999965 7999654
Done!