BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009303
(538 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9UGP5|DPOLL_HUMAN DNA polymerase lambda OS=Homo sapiens GN=POLL PE=1 SV=1
Length = 575
Score = 231 bits (590), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 140/411 (34%), Positives = 214/411 (52%), Gaps = 36/411 (8%)
Query: 133 SDGESSHRKKIKSSTEDVE-----HFQAESKGDVETNALSEAPNSPMSSESLTNTLSTAS 187
SD E+S ++ + S D+E H+ +GD E P + ++ + A
Sbjct: 194 SDDEASDGEETQVSAADLEALISGHYPTSLEGDCE----------PSPAPAVLDKWVCAQ 243
Query: 188 ASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLP 247
S +++H N +ITE L Y G+ R+ Y KAI ++
Sbjct: 244 PSSQKATNH-------------NLHITEKLEVLAKAYSVQGDKWRALGYAKAINALKSFH 290
Query: 248 FKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPAT 307
+ S + +PGIGK M + I EI+ +G L KL+H E V + LF +WG G T
Sbjct: 291 KPVTSYQEACSIPGIGKRMAEKIIEILESGHLRKLDHI--SESVPVLELFSNIWGAGTKT 348
Query: 308 AQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLP 367
AQ Y++G R+L+D++++ SLT Q +GLK++ D R+PR E ++E+ +QKA +
Sbjct: 349 AQMWYQQGFRSLEDIRSQASLTTQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFNS 408
Query: 368 EVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSE 427
++ + GSYRRGKA+CGD+DV+I HPD +SH+G S+ + L++ FL +DL+ + E
Sbjct: 409 GLLCVACGSYRRGKATCGDVDVLITHPDGRSHRGIFSRLLDSLRQEGFLTDDLV--SQEE 466
Query: 428 EGTDSGVDTYFGLCTYPGRELRH-RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESK 486
G Y G+C PG RH R+D V P +A L+ +TG+ NR +R LA++K
Sbjct: 467 NGQQ---QKYLGVCRLPGPGRRHRRLDIIVVPYSEFACALLYFTGSAHFNRSMRALAKTK 523
Query: 487 GYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 537
G L + L A + V L TEK+VF LG P+ EP ER+
Sbjct: 524 GMSLSEHALSTAVVRNTHGCKVGPGRVLPTPTEKDVFRLLGLPYREPAERD 574
>sp|Q5RKI3|DPOLL_RAT DNA polymerase lambda OS=Rattus norvegicus GN=Poll PE=2 SV=1
Length = 573
Score = 231 bits (588), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 156/550 (28%), Positives = 258/550 (46%), Gaps = 34/550 (6%)
Query: 12 ALDSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVL---AMDLEA 68
A D+ G + +R ++ G+ R +++ ++++Q G V + VTH++ MD E
Sbjct: 33 AGDARGWLSSLRAHIMPTGIGRARAELFEKQIIQHGGQVCSAQAPGVTHIVVDEGMDYER 92
Query: 69 LLQQVSKQHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGN 128
L+ + +++ WL SL L EK D L ++ + S+ +
Sbjct: 93 ALRLLRLP-QLPPGAQLVKSAWL--SLCLQEKKLTDTDGFSLSSPKRSLNEPQPSKSGQD 149
Query: 129 GNTSSDGESSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPNSPMSSESLTNTLSTASA 188
+ R + S K + ++ + +S+ +S+A
Sbjct: 150 ASAPGTQGVLPRTTLSLSPPCTRAVSPPPKAEKPPKTQTQLSSEDEASDGEGPQVSSADL 209
Query: 189 SPDFSSHHITDPSLLYNP--------------------PDLNKNITEIFGKLINIYRALG 228
S H+ T P P + N +ITE L Y G
Sbjct: 210 QALISGHYPTPPGEDGGPDPAPEALGKWVCAQPSSQKATNYNLHITEKLEVLAKAYNVQG 269
Query: 229 EDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKD 288
+ R+ Y KAI ++ + S + +PG+G+ M + + EI+ +G L KL+H
Sbjct: 270 DKWRALGYAKAINALKSFHKPVSSYQEACSIPGVGRRMAEKVMEILESGHLRKLDHI--S 327
Query: 289 EKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPR 348
+ V + LF +WG G TAQ Y +G R+L+D++ SLT Q +GLK++DD R+PR
Sbjct: 328 DSVPVLELFSNIWGAGTKTAQMWYHQGFRSLEDIRGLASLTAQQAIGLKHYDDFLDRMPR 387
Query: 349 HEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVK 408
E ++E++++ + + P ++ + GS+RRGK +CGD+DV+I HPD +SH+G S +
Sbjct: 388 EEAAEIEQMVRVSAQAFNPGLLCVACGSFRRGKVTCGDVDVLITHPDGRSHQGIFSPLLD 447
Query: 409 KLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRH-RIDFKVYPRDIYAFGLI 467
L++ FL +DL+ + E G Y G+C PG RH R+D V P +A L+
Sbjct: 448 SLRQQGFLTDDLV--SQEENGQQ---QKYLGVCRLPGAGQRHRRLDIIVVPYSEFACALL 502
Query: 468 AWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLG 527
+TG+ NR +R LA++KG L + L A + V A L TEK+VF LG
Sbjct: 503 YFTGSAHFNRSMRALAKTKGMSLSEHALSAAVVRNSQGVKVGAGQVLPTPTEKDVFKLLG 562
Query: 528 FPWLEPHERN 537
P+ EP ER+
Sbjct: 563 LPYREPAERD 572
>sp|Q4R380|DPOLL_MACFA DNA polymerase lambda OS=Macaca fascicularis GN=POLL PE=2 SV=1
Length = 575
Score = 230 bits (587), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 165/549 (30%), Positives = 267/549 (48%), Gaps = 45/549 (8%)
Query: 19 FAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVL---AMDLEALLQQVSK 75
+ +R +V G+ R +++ +++VQ G + VTH++ MD E L+ +
Sbjct: 41 LSSLRAHVVRTGIGRARAELFEKQIVQHGGQLCPVQGPGVTHIVVDEGMDYERALRLLRL 100
Query: 76 QHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNG--NTSS 133
+++ WL SL L E+ D+ + I + L Q Q + +S
Sbjct: 101 P-RLPPGAQLVKSAWL--SLCLQERRLVDVAGFSI-----FIPSKYLDQSQPSKAEQDAS 152
Query: 134 DGESSHRKKIKSS----------------TEDVEHFQAESKGDVETNALSEAPNSPMSSE 177
+H ++++ T++ + QA+ D E + E S E
Sbjct: 153 LPPGTHEALLQTALPPPPSPTRPVSPPQKTKEAPNTQAQPISDDEASDGEETQVSAADLE 212
Query: 178 SLTNTLSTASASPDFS---SHHITDPSLLYNPP-----DLNKNITEIFGKLINIYRALGE 229
+L + AS D + + D + P + N +ITE L Y G+
Sbjct: 213 ALISGHYPASLEGDCDPSPAPVVLDKWVCAQPSSQKATNHNLHITEKLEVLAKAYSVQGD 272
Query: 230 DRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDE 289
R+ Y KAI ++ + S + +PGIGK M + I EI+ +G L KL+H E
Sbjct: 273 KWRALGYAKAINALKSFHKPVTSYQEACSIPGIGKRMAEKIIEILESGHLRKLDHI--SE 330
Query: 290 KVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRH 349
V + LF +WG G TAQ Y++G R+L+D++++ SLT Q +GLK+++D R+PR
Sbjct: 331 SVPVLELFSNIWGAGTKTAQMWYQQGFRSLEDIRSQASLTTQQAIGLKHYNDFLERMPRE 390
Query: 350 EVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKK 409
E ++E+ +QKA + ++ + GSYRRGKA+CGD+DV+I HPD +SH+G S+ +
Sbjct: 391 EATEIEQTVQKAAQAFNSGLLCVACGSYRRGKATCGDVDVLITHPDGRSHRGIFSRLLDS 450
Query: 410 LKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRH-RIDFKVYPRDIYAFGLIA 468
L++ FL +DL+ + E G Y G+C PG RH R+D V P +A L+
Sbjct: 451 LRQQGFLTDDLV--SQEENGQQ---QKYLGVCRLPGPGWRHRRLDIIVVPYSEFACALLY 505
Query: 469 WTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGF 528
+TG+ NR +R LA++KG L + L A + + L TEK+VF LG
Sbjct: 506 FTGSAHFNRSMRALAKTKGMSLSEHALSTAVVRNTHGCKMGPGRVLPTPTEKDVFRLLGL 565
Query: 529 PWLEPHERN 537
P+ EP ER+
Sbjct: 566 PYREPAERD 574
>sp|Q9QXE2|DPOLL_MOUSE DNA polymerase lambda OS=Mus musculus GN=Poll PE=2 SV=1
Length = 573
Score = 226 bits (577), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 156/555 (28%), Positives = 260/555 (46%), Gaps = 48/555 (8%)
Query: 14 DSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLA---MDLEALL 70
++ G + +R ++ G+ R +++ ++++ G V + VTH++ MD E L
Sbjct: 35 EARGWLSSLRAHIMPAGIGRARAELFEKQIIHHGGQVCSAQAPGVTHIVVDEDMDYERAL 94
Query: 71 QQVSKQHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNGN 130
+ + +++ WL L+ G + + + + R L + Q + +
Sbjct: 95 RLLRLP-QLPPGAQLVKSTWLSLCLQEGRLTDTEGFSLPM-------PKRSLDEPQPSKS 146
Query: 131 TSSDGESSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPNSPMSSESLTN-----TLST 185
++ + +T + + T + +SSE T+ +S+
Sbjct: 147 GQDASAPGTQRDLPRTTLSLSPPHTRAVSPPPTAEKPSRTQAQLSSEDETSDGEGPQVSS 206
Query: 186 ASASPDFSSHHITDPSLLYNP--------------------PDLNKNITEIFGKLINIYR 225
A + H+ T P P + N +ITE L Y
Sbjct: 207 ADLQALITGHYPTPPEEDGGPDPAPEALDKWVCAQPSSQKATNYNLHITEKLEVLAKAYS 266
Query: 226 ALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHF 285
G+ R+ Y KAI ++ + S + +PGIGK M + + EI+ +G L KL+H
Sbjct: 267 VQGDKWRALGYAKAINALKSFHKPVSSYQEACSIPGIGKRMAEKVMEILESGHLRKLDHI 326
Query: 286 EKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTR 345
+ V + LF +WG G TAQ Y +G R L+DL++ SLT Q +GLK++DD R
Sbjct: 327 --SDSVPVLELFSNIWGAGTKTAQMWYHQGFRNLEDLQSLGSLTAQQAIGLKHYDDFLDR 384
Query: 346 IPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSK 405
+PR E ++E+ ++ + + P ++ + GSYRRGK +CGD+DV+I HPD +SH+G S
Sbjct: 385 MPREEAAEIEQTVRISAQAFNPGLLCVACGSYRRGKMTCGDVDVLITHPDGRSHRGIFSC 444
Query: 406 YVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRH-RIDFKVYPRDIYAF 464
+ L++ FL +DL+ + E G Y G+C PG RH R+D V P +A
Sbjct: 445 LLDSLRQQGFLTDDLV--SQEENGQQ---QKYLGVCRLPGPGKRHRRLDIIVVPYCEFAC 499
Query: 465 GLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTS--LKFDTEKEV 522
L+ +TG+ NR +R LA++KG L + L A + QGV+ L TEK+V
Sbjct: 500 ALLYFTGSAHFNRSMRALAKTKGMSLSEHALSAAVVRN--SQGVKVGPGQVLPTPTEKDV 557
Query: 523 FDFLGFPWLEPHERN 537
F LG P+ EP ER+
Sbjct: 558 FKHLGLPYREPAERD 572
>sp|P06766|DPOLB_RAT DNA polymerase beta OS=Rattus norvegicus GN=Polb PE=1 SV=4
Length = 335
Score = 208 bits (530), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 121/340 (35%), Positives = 196/340 (57%), Gaps = 27/340 (7%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLVELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 326
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+KL ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPSAARKLVDEGIKTLEDLRKNED 130
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 386
L H QR+GLKYF+D + RIPR E+ QM+ ++ +++ PE I GS+RRG S GD
Sbjct: 131 KLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLNEVKKLDPEYIATVCGSFRRGAESSGD 190
Query: 387 LDVVIMHPDRKSHKG----FLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCT 442
+DV++ HP+ S L + V++L++++F+ + L G + G+C
Sbjct: 191 MDVLLTHPNFTSESSKQPKLLHRVVEQLQKVRFITDTL----------SKGETKFMGVCQ 240
Query: 443 YPG----RELRH-RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFP 497
P E H RID ++ P+D Y G++ +TG+D+ N+ +R A KG+ +++ + P
Sbjct: 241 LPSENDENEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRP 300
Query: 498 ATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 537
G GV A L D+E+++FD++ + + EP +R+
Sbjct: 301 L-----GVTGV-AGEPLPVDSEQDIFDYIQWRYREPKDRS 334
>sp|Q27958|DPOLB_BOVIN DNA polymerase beta OS=Bos taurus GN=POLB PE=2 SV=3
Length = 335
Score = 207 bits (528), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 121/340 (35%), Positives = 194/340 (57%), Gaps = 27/340 (7%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLTELANFEKNVNQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 326
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+K ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNED 130
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 386
L H QR+GLKYF+D + RIPR E+ QM+ ++ ++V E I GS+RRG S GD
Sbjct: 131 KLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLSEVKKVDSEYIATVCGSFRRGAESSGD 190
Query: 387 LDVVIMHPDRKSHKG----FLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCT 442
+DV++ HP S L + V++L++++F+ + L G + G+C
Sbjct: 191 MDVLLTHPSFTSESAKQPKLLHRVVEQLQKVRFITDTL----------SKGETKFMGVCQ 240
Query: 443 YPG----RELRH-RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFP 497
P +E H RID ++ P+D Y G++ +TG+D+ N+ +R A KG+ +++ + P
Sbjct: 241 LPSKNDEKEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRP 300
Query: 498 ATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 537
G GV A L D+EK++FD++ + + EP +R+
Sbjct: 301 L-----GVTGV-AGEPLPVDSEKDIFDYIQWKYREPKDRS 334
>sp|Q8K409|DPOLB_MOUSE DNA polymerase beta OS=Mus musculus GN=Polb PE=2 SV=3
Length = 335
Score = 206 bits (525), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 121/340 (35%), Positives = 195/340 (57%), Gaps = 27/340 (7%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLVELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 326
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+K ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPSAARKFVDEGIKTLEDLRKNED 130
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 386
L H QR+GLKYF+D + RIPR E+ QM+ ++ ++V E I GS+RRG S GD
Sbjct: 131 KLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLNEIKKVDSEYIATVCGSFRRGAESSGD 190
Query: 387 LDVVIMHPDRKSHKG----FLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCT 442
+DV++ HP+ S L + V++L+++ F+ + L G + G+C
Sbjct: 191 MDVLLTHPNFTSESSKQPKLLHRVVEQLQKVHFITDTL----------SKGETKFMGVCQ 240
Query: 443 YP----GRELRH-RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFP 497
P G+E H RID ++ P+D Y G++ +TG+D+ N+ +R A KG+ +++ + P
Sbjct: 241 LPSEKDGKEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRP 300
Query: 498 ATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 537
G GV A L D+E+++FD++ + + EP +R+
Sbjct: 301 L-----GVTGV-AGEPLPVDSEQDIFDYIQWRYREPKDRS 334
>sp|P06746|DPOLB_HUMAN DNA polymerase beta OS=Homo sapiens GN=POLB PE=1 SV=3
Length = 335
Score = 205 bits (521), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 121/340 (35%), Positives = 192/340 (56%), Gaps = 27/340 (7%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLTELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 326
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+K ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNED 130
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 386
L H QR+GLKYF D + RIPR E+ QM+ ++ ++V E I GS+RRG S GD
Sbjct: 131 KLNHHQRIGLKYFGDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGSFRRGAESSGD 190
Query: 387 LDVVIMHPDRKSHKG----FLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCT 442
+DV++ HP S L + V++L+++ F+ + L G + G+C
Sbjct: 191 MDVLLTHPSFTSESTKQPKLLHQVVEQLQKVHFITDTL----------SKGETKFMGVCQ 240
Query: 443 YPG----RELRH-RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFP 497
P +E H RID ++ P+D Y G++ +TG+D+ N+ +R A KG+ +++ + P
Sbjct: 241 LPSKNDEKEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRP 300
Query: 498 ATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 537
G GV A L D+EK++FD++ + + EP +R+
Sbjct: 301 L-----GVTGV-AGEPLPVDSEKDIFDYIQWKYREPKDRS 334
>sp|O57383|DPOLB_XENLA DNA polymerase beta OS=Xenopus laevis GN=polb PE=1 SV=3
Length = 334
Score = 203 bits (516), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 118/338 (34%), Positives = 187/338 (55%), Gaps = 26/338 (7%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQD 268
N+ IT+ +L N R + + +Y KA VI K P KI+S + K L G+G + +
Sbjct: 12 NEGITDFLVELANYERNVNRAIHKYNAYRKAASVIAKYPTKIKSGTEAKKLDGVGAKIAE 71
Query: 269 HIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLK-NEDS 327
I E + TGKL KLE +D+ +I+ V GIGPA A+K +++G +TLDDL+ NE
Sbjct: 72 KIDEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPAAARKFFDEGIKTLDDLRNNEHK 131
Query: 328 LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDL 387
L H Q++GLK+FDD + RIPR E+ QM+ ++ + PE I GS+RRG S GD+
Sbjct: 132 LNHHQKIGLKHFDDFEKRIPRKEMLQMQEIILDKVNNLDPEYIATVCGSFRRGAESSGDM 191
Query: 388 DVVIMHPDRKSHKG----FLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTY 443
D+++ HPD S L + V+ L++ F+ + L+ G + G+C
Sbjct: 192 DILLTHPDFTSESAKQPRLLHQVVQCLEDCNFITDTLV----------KGDTKFMGVCQL 241
Query: 444 PGRELR----HRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPAT 499
P + RID ++ P+D Y G++ +TG+D+ N+ +R A KG+ L++ L P
Sbjct: 242 PCESDQDYPYRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRTHALEKGFTLNEYTLRPL- 300
Query: 500 YGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 537
G G+ A L D+EK++FD++ + + EP +R+
Sbjct: 301 ----GVTGI-AGEPLPIDSEKDIFDYIQWKYREPKDRS 333
>sp|Q6DRD3|DPOLB_DANRE DNA polymerase beta OS=Danio rerio GN=polb PE=2 SV=2
Length = 336
Score = 195 bits (495), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 121/342 (35%), Positives = 185/342 (54%), Gaps = 29/342 (8%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN+ IT+ +L N R + + +Y KA VI K P KI+S + K L G+G +
Sbjct: 10 LNEGITDFLVELANYERNVNRAIHKYNAYRKAASVIAKYPQKIKSGTEAKKLDGVGAKIA 69
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKN-ED 326
+ I E +TTGKL KLE D+ +I+ V GIGPA A+K +++G R L+DLK E
Sbjct: 70 EKIDEFLTTGKLRKLEKIRNDDTSSSINFLTRVTGIGPAAARKFFDEGVRNLEDLKKIEH 129
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 386
L H Q++GLKYF++ + RIPR E+++ME L+ K + V PE I GSYRRG S GD
Sbjct: 130 KLNHHQQIGLKYFEEFEKRIPRSEMQKMEALILKELDIVDPEYIGTICGSYRRGAESSGD 189
Query: 387 LDVVIMHPDRKSHK----GFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCT 442
+D+++ HPD S L V L+ + F+ + L G + G+C
Sbjct: 190 IDILLTHPDFTSQSEKQPKLLHAVVDHLESIGFITDTL----------SKGDTKFMGVCQ 239
Query: 443 YP-------GRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGL 495
L RID ++ P+D Y G++ +TG+D+ N+ +R A KG+ L++ +
Sbjct: 240 LQKEKEEEEEESLHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRTHALEKGFTLNEYTI 299
Query: 496 FPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 537
P G GV A L D+EK++F+++ + + EP +R+
Sbjct: 300 RPL-----GVTGV-AGEPLLVDSEKDIFEYIQWKYREPKDRS 335
>sp|Q7T6Y4|DPOLX_MIMIV Probable DNA polymerase family X OS=Acanthamoeba polyphaga
mimivirus GN=MIMI_L318 PE=1 SV=2
Length = 354
Score = 162 bits (411), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 111/324 (34%), Positives = 174/324 (53%), Gaps = 37/324 (11%)
Query: 235 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKL-EHF--EKDEKV 291
S KA+ +++ L F+I A+ VKG+PGIG I+EI+ TGKL L + F EK +++
Sbjct: 41 SIKKALSILKNLDFEITDANDVKGIPGIGAGTIKRIKEILETGKLHDLKDKFSPEKQKQI 100
Query: 292 RTISLFGEVWGIGPATAQKLYEK-GHRTLDDLKN-----EDSLTHSQRLGLKYFDDIKTR 345
I V GIG +TA+KL + G R++DDLK + ++ S LGLKY+ ++
Sbjct: 101 EGIQELENVIGIGSSTAKKLISQYGIRSVDDLKKAIETGKVKVSTSIMLGLKYYGIVQRD 160
Query: 346 IPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFL-- 403
IPR E+ +E+LL K ++ P++ I+ GSYRRGK + GD+DV++ HP K+ K L
Sbjct: 161 IPRKEITAIEKLLSKEAHKIDPDLEIIICGSYRRGKKTSGDIDVLMYHPKMKTSKEMLHP 220
Query: 404 ---------SKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRHRIDF 454
+ Y+ +L E FL +D+ F+ + + Y G C Y +R RID
Sbjct: 221 EKFDLEPYFNLYIDRLTEKGFLIDDITFNPNKK---------YMGFCKYKLNPVR-RIDI 270
Query: 455 KVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSL 514
+ P + A ++ +TG LN ++R A+ + L++ GLF K G A+ L
Sbjct: 271 RFIPYNSLAPAMLYFTGPMELNTKMRSAAKKRKMILNEYGLFKT-----DKNG--AQIPL 323
Query: 515 KFDTEKEVFDFLGFPWLEPHERNL 538
+E ++F LG +L P +R L
Sbjct: 324 DTKSEADIFHALGMDYLTPQQREL 347
>sp|Q9JIW4|DPOLM_MOUSE DNA-directed DNA/RNA polymerase mu OS=Mus musculus GN=Polm PE=1
SV=2
Length = 496
Score = 151 bits (381), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 95/331 (28%), Positives = 158/331 (47%), Gaps = 35/331 (10%)
Query: 232 RSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKV 291
R S+ +A V++ LP + S Q+ GLP G+ IQE++ G +++ E+
Sbjct: 175 RLLSFSRAASVLKSLPCPVASLSQLHGLPYFGEHSTRVIQELLEHGTCEEVKQVRCSERY 234
Query: 292 RTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS-LTHSQRLGLKYFDDIKTRIPRHE 350
+T+ LF +V+G+G TA + Y++G RTLD+L+ + LT Q+ GL+Y+ D+ T + R +
Sbjct: 235 QTMKLFTQVFGVGVKTANRWYQEGLRTLDELREQPQRLTQQQKAGLQYYQDLSTPVRRAD 294
Query: 351 VEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKL 410
E +++L++ A + LP + G +RRGK D+D +I HP+ G L K + L
Sbjct: 295 AEALQQLIEAAVRQTLPGATVTLTGGFRRGKLQGHDVDFLITHPEEGQEVGLLPKVMSCL 354
Query: 411 KEM------KFLREDLIFSTHSEEGTDSGVDTY---FGLCTYPGRELRH----------- 450
+ ++ R L S H+ S +D + F + P +
Sbjct: 355 QSQGLVLYHQYHRSHLADSAHNLRQRSSTMDAFERSFCILGLPQPQQAALAGALPPCPTW 414
Query: 451 ---RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLA-ESKGYRLDDTGLFPATYGSGGKQ 506
R+D V P + F L+ WTG+ R LR + + KG L+ GLF
Sbjct: 415 KAVRVDLVVTPSSQFPFALLGWTGSQFFERELRRFSRQEKGLWLNSHGLF---------- 464
Query: 507 GVRARTSLKFDTEKEVFDFLGFPWLEPHERN 537
+ +E++VF LG +L P +RN
Sbjct: 465 DPEQKRVFHATSEEDVFRLLGLKYLPPEQRN 495
>sp|P42118|TDT_XENLA DNA nucleotidylexotransferase OS=Xenopus laevis GN=dntt PE=2 SV=1
Length = 507
Score = 147 bits (370), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 104/358 (29%), Positives = 172/358 (48%), Gaps = 38/358 (10%)
Query: 208 DLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
D N+ T+ F L + R+ ++ +A +I+ LPF I + +++GLP +G M+
Sbjct: 159 DTNRIFTDAFDILAEHFEFCENKGRTVAFLRASSLIKSLPFPITAMKELEGLPWLGDQMK 218
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED- 326
I+EI+ GK K+ +E+ ++ F V+G+G T+ K + G RTL+++KNE
Sbjct: 219 GIIEEILEEGKSYKVLEVMNEERYKSFKQFTSVFGVGLKTSDKWFRMGFRTLEEIKNEKE 278
Query: 327 -SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 385
LT Q+ GL Y++DI + + R E E E+L++ + +P+ I+ G +RRGK
Sbjct: 279 LKLTKMQKCGLLYYEDITSYVSRAEAETTEQLIKSIVWKFVPDAIVTLTGGFRRGKKKGH 338
Query: 386 DLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLR-EDLIFSTHSEEGTDS----GVDTY--- 437
D+D++I + K L + LK L ++I ST E S +D +
Sbjct: 339 DVDILITCARKGKEKNILHNTMSVLKNRGLLLFYNIIESTFDETKLPSRHVDALDHFQKC 398
Query: 438 FGLCTYPGREL-----------------RHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLR 480
F + P R++ R+D + P + Y + L+ WTG+ R LR
Sbjct: 399 FTILKLPKRQMDIGNIIDPHECERKNWKAVRLDLVITPYEQYPYALLGWTGSRQFERDLR 458
Query: 481 LLA-ESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 537
A K LD+ GL+ T + LK + E+++F LG +LEP ERN
Sbjct: 459 RYATHEKRMMLDNHGLYDKTKNN----------FLKANNEEDIFKQLGLDYLEPWERN 506
>sp|Q9NP87|DPOLM_HUMAN DNA-directed DNA/RNA polymerase mu OS=Homo sapiens GN=POLM PE=1
SV=1
Length = 494
Score = 146 bits (368), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 92/351 (26%), Positives = 169/351 (48%), Gaps = 33/351 (9%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N ++E L G + R ++ +A V++ LP + + Q++GLP G+
Sbjct: 153 NTGLSEALEILAEAAGFEGSEGRLLTFCRAASVLKALPSPVTTLSQLQGLPHFGEHSSRV 212
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNE-DSL 328
+QE++ G ++E + E+ +T+ LF +++G+G TA + Y +G RTLDDL+ + L
Sbjct: 213 VQELLEHGVCEEVERVRRSERYQTMKLFTQIFGVGVKTADRWYREGLRTLDDLREQPQKL 272
Query: 329 THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLD 388
T Q+ GL++ D+ T + R +V+ +++++++A + LP + G +RRGK D+D
Sbjct: 273 TQQQKAGLQHHQDLSTPVLRSDVDALQQVVEEAVGQALPGATVTLTGGFRRGKLQGHDVD 332
Query: 389 VVIMHPDRKSHKGFLSKYVKKLKEMKFL----REDLIFSTHSEEGTDSGVDTY------F 438
+I HP G L + + +L++ + + + + S +D + F
Sbjct: 333 FLITHPKEGQEAGLLPRVMCRLQDQGLILYHQHQHSCCESPTRLAQQSHMDAFERSFCIF 392
Query: 439 GLCTYPGREL-----------RHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLA-ESK 486
L PG + R+D V P + F L+ WTG+ + R LR + + K
Sbjct: 393 RLPQPPGAAVGGSTRPCPSWKAVRVDLVVAPVSQFPFALLGWTGSKLFQRELRRFSRKEK 452
Query: 487 GYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 537
G L+ GLF +T + +E+++F LG +L P +RN
Sbjct: 453 GLWLNSHGLF----------DPEQKTFFQAASEEDIFRHLGLEYLPPEQRN 493
>sp|O02789|TDT_MONDO DNA nucleotidylexotransferase OS=Monodelphis domestica GN=DNTT PE=2
SV=1
Length = 518
Score = 139 bits (351), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 100/361 (27%), Positives = 167/361 (46%), Gaps = 43/361 (11%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N+ T+ F L Y D ++ +AI V++ LPF++ S +GLP IG ++
Sbjct: 167 NQRFTDAFEILAKNYEFKENDDTCLTFMRAISVLKCLPFEVVSLKDTEGLPWIGDEVKGI 226
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSL- 328
++EI+ G+ +++ DE+ ++ LF V+G+G TA K Y G RTL+ ++++ +L
Sbjct: 227 MEEIIEDGESLEVQAVLNDERYQSFKLFTSVFGVGLKTADKWYRMGFRTLNKIRSDKTLK 286
Query: 329 -THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDL 387
T Q+ GL Y++D+ + + E + + L+Q A LP+ ++ G +RRGK D+
Sbjct: 287 LTKMQKAGLCYYEDLIDCVSKAEADAVSLLVQDAVWTFLPDALVTITGGFRRGKEFGHDV 346
Query: 388 DVVIMHP--DRKSHKGFLSKYVKKLKEMKFLR---------EDLIFSTHSEEGTDSGVDT 436
D +I P +++ L K K+ L EDL + + D
Sbjct: 347 DFLITSPGAEKEQEDQLLQKVTNLWKKQGLLLYCDLIESTFEDLKLPSRKIDALDHFQKC 406
Query: 437 YFGLCTYPGRELRH-------------------RIDFKVYPRDIYAFGLIAWTGNDVLNR 477
+ L Y +E + R+D V P D YAF L+ W+G+ R
Sbjct: 407 FLILKLYHHKEDKRKWEMPTGSNESEAKSWKAIRVDLVVCPYDRYAFALLGWSGSRQFER 466
Query: 478 RLRLLA-ESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 536
LR A K LD+ L+ T + LK +E+E+F LG +++P ER
Sbjct: 467 DLRRYATHEKKMMLDNHALYDKT----------KKIFLKAKSEEEIFAHLGLEYIQPSER 516
Query: 537 N 537
N
Sbjct: 517 N 517
>sp|O57486|TDT_AMBME DNA nucleotidylexotransferase OS=Ambystoma mexicanum GN=DNTT PE=2
SV=2
Length = 510
Score = 132 bits (331), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 100/361 (27%), Positives = 169/361 (46%), Gaps = 43/361 (11%)
Query: 210 NKN--ITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
NKN T+ F L Y +R S+ +A V++ L F I V GLPG G ++
Sbjct: 159 NKNTLFTDAFEILAENYEFRENERSCLSFRQAASVLKSLTFTIAGMADVDGLPGFGDHIR 218
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 327
I++++ G+ SK+ DE R++ LF ++G+G TA+K + G RTL+++K+ ++
Sbjct: 219 AVIEDLIEDGESSKVSEVLNDEVYRSLKLFTTIFGVGLRTAEKWHRLGIRTLEEIKSNEN 278
Query: 328 LTHS--QRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 385
L S Q GL++++DI + + E + + +++ A LP+ ++ G +RRG +
Sbjct: 279 LKFSKMQIAGLQHYEDILGGVRKAEADAVAMVVRDAVWTFLPDAVVTLTGGFRRGNKTGH 338
Query: 386 DLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIF-STHSEEGTDS---GVDTYFGLC 441
D+D++I P + K L K + K+ L I ST E+ S + +F C
Sbjct: 339 DVDMLITSPIQGKEKELLHKVINLWKKQDLLLCHTIHESTMDEDNLPSKSVNLLDHFQKC 398
Query: 442 TYPGRELRH------------------------RIDFKVYPRDIYAFGLIAWTGNDVLNR 477
+ +H R+D P + YAF L+ WTG+ R
Sbjct: 399 FAILKSNQHRGEISSCDGPHDSRERGKRIWKAIRVDLVFCPFEQYAFALLGWTGSRQFER 458
Query: 478 RLRLLA-ESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 536
LR A K +D+ L+ T R +K ++E+E+F LG +++P ER
Sbjct: 459 DLRRYASHEKKMMIDNHALYDKT----------KRVFVKCESEEEIFGHLGLEYIDPVER 508
Query: 537 N 537
N
Sbjct: 509 N 509
>sp|Q92089|TDT_ONCMY DNA nucleotidylexotransferase OS=Oncorhynchus mykiss GN=dntt PE=2
SV=1
Length = 501
Score = 127 bits (319), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 107/411 (26%), Positives = 185/411 (45%), Gaps = 51/411 (12%)
Query: 163 TNALSEA-PNSPMSSESLTNTLSTASASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLI 221
T+++ E P + S+ NT + SP + +++ + N N +IF ++
Sbjct: 105 TDSMREGRPVRVETRHSIQNTPTGTDCSPPTAVANVSQYACQRRTTTENHN-NKIFTDVM 163
Query: 222 NIYRALGEDRRS----FSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTG 277
E S ++ +A V++ LP + ++GLP +G+ + ++EI+T G
Sbjct: 164 EELAESSEFNESKGPCLAFRQAASVLKSLPSAVHCLKAIQGLPCLGEHTKAVMEEILTFG 223
Query: 278 KLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS--LTHSQRLG 335
+ K+E DE+ + + LF V+G+GP TA+K Y +G R+L ++ E + L QR G
Sbjct: 224 RSFKVEEIRCDERYQALKLFTSVFGVGPKTAEKWYRRGLRSLQEILTEPNIQLNRMQRAG 283
Query: 336 LKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPD 395
Y+ DI + + E + + +++ + P+ I+ G +RRGK D+D ++ P+
Sbjct: 284 FLYYSDISKAVSKAEAKAVGCIIEDTFHWIAPDAILALTGGFRRGKEYGHDVDFLLTMPE 343
Query: 396 RKSHKGFLSKYVKKLKEMKFLR-------------------EDL------IFSTHSEEGT 430
+G L + +LK+ L ED+ E+G
Sbjct: 344 IGKDEGLLLHVIDRLKDQGILLYCDYQGSTFDVSKLPSCRFEDMDCFQKCFLILRLEQGQ 403
Query: 431 DSGVDTYFGLCTYPG--RELRH-RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAE-SK 486
V+ GL PG R R R+D P D YAF L+ WTG+ R LR A+ +
Sbjct: 404 ---VEGERGLQRDPGDSRGWRAVRVDLVAPPVDRYAFALLGWTGSR-FGRDLRTFAQKER 459
Query: 487 GYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 537
LD+ L+ T + L TE+++F LG ++EP +RN
Sbjct: 460 QMLLDNHALYDKT----------KKLCLLATTEEDIFTHLGLEYVEPWQRN 500
>sp|P09838|TDT_MOUSE DNA nucleotidylexotransferase OS=Mus musculus GN=Dntt PE=1 SV=3
Length = 530
Score = 127 bits (319), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 102/368 (27%), Positives = 173/368 (47%), Gaps = 43/368 (11%)
Query: 212 NITEIFGKLINIYRALGEDRRS----FSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
N ++F ++I E R + ++ +A V++ LPF I S +G+P +G ++
Sbjct: 163 NYNQLFTDALDILAENDELRENEGSCLAFMRASSVLKSLPFPITSMKDTEGIPCLGDKVK 222
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 327
I+ I+ G+ S+ + DE+ ++ LF V+G+G TA+K + G RTL ++++ S
Sbjct: 223 SIIEGIIEDGESSEAKAVLNDERYKSFKLFTSVFGVGLKTAEKWFRMGFRTLSKIQSDKS 282
Query: 328 L--THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 385
L T Q+ G Y++D+ + + R E E + L+++A LP+ ++ G +RRGK +
Sbjct: 283 LRFTQMQKAGFLYYEDLVSCVNRPEAEAVSMLVKEAVVTFLPDALVTMTGGFRRGKMTGH 342
Query: 386 DLDVVIMHPD--RKSHKGFLSKYVKKLKEMK-FLREDLIFSTHSEEGTDS-GVDT--YFG 439
D+D +I P+ + L K K+ L D++ ST + S VD +F
Sbjct: 343 DVDFLITSPEATEDEEQQLLHKVTDFWKQQGLLLYCDILESTFEKFKQPSRKVDALDHFQ 402
Query: 440 LCTYPGRELRH-------------------RIDFKVYPRDIYAFGLIAWTGNDVLNRRLR 480
C + +L H R+D + P D AF L+ WTG+ R LR
Sbjct: 403 KC-FLILKLDHGRVHSEKSGQQEGKGWKAIRVDLVMCPYDRRAFALLGWTGSRQFERDLR 461
Query: 481 LLA-ESKGYRLDDTGLFPATYGSG----------GKQGVRARTSLKFDTEKEVFDFLGFP 529
A + LD+ L+ T G K R L+ ++E+E+F LG
Sbjct: 462 RYATHERKMMLDNHALYDRTKGKTVTISPLDGKVSKLQKALRVFLEAESEEEIFAHLGLD 521
Query: 530 WLEPHERN 537
++EP ERN
Sbjct: 522 YIEPWERN 529
>sp|P04053|TDT_HUMAN DNA nucleotidylexotransferase OS=Homo sapiens GN=DNTT PE=1 SV=3
Length = 509
Score = 122 bits (305), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 103/356 (28%), Positives = 169/356 (47%), Gaps = 40/356 (11%)
Query: 212 NITEIFGKLINIYRALGEDRRS----FSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
N +IF +I E R + ++ +A V++ LPF I S +G+P +G ++
Sbjct: 163 NCNQIFTDAFDILAENCEFRENEDSCVTFMRAASVLKSLPFTIISMKDTEGIPCLGSKVK 222
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 327
I+EI+ G+ S+++ DE+ ++ LF V+G+G T++K + G RTL ++++ S
Sbjct: 223 GIIEEIIEDGESSEVKAVLNDERYQSFKLFTSVFGVGLKTSEKWFRMGFRTLSKVRSDKS 282
Query: 328 L--THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 385
L T Q+ G Y++D+ + + R E E + L+++A LP+ + G +RRGK
Sbjct: 283 LKFTRMQKAGFLYYEDLVSCVTRAEAEAVSVLVKEAVWAFLPDAFVTMTGGFRRGKKMGH 342
Query: 386 DLDVVIMHPDRKSHKGFLSKYVKKLKEMK--FLREDLIFSTHSEEGTDS-GVDT--YFGL 440
D+D +I P + L + V L E K L DL+ ST + S VD +F
Sbjct: 343 DVDFLITSPGSTEDEEQLLQKVMNLWEKKGLLLYYDLVESTFEKLRLPSRKVDALDHFQK 402
Query: 441 CTYPGRELRH------------------RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLL 482
C + R R+D + P + AF L+ WTG+ R LR
Sbjct: 403 CFLIFKLPRQRVDSDQSSWQEGKTWKAIRVDLVLCPYERRAFALLGWTGSRQFERDLRRY 462
Query: 483 A-ESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 537
A + LD+ L+ T R LK ++E+E+F LG ++EP ERN
Sbjct: 463 ATHERKMILDNHALYDKT----------KRIFLKAESEEEIFAHLGLDYIEPWERN 508
>sp|A4PCD4|TDT_EULMA DNA nucleotidylexotransferase OS=Eulemur macaco GN=DNTT PE=3 SV=1
Length = 511
Score = 121 bits (304), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 104/360 (28%), Positives = 173/360 (48%), Gaps = 42/360 (11%)
Query: 208 DLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
+ N T+ F L Y + + ++ +A V++ LPF I + +G+P + ++
Sbjct: 163 NCNHVFTDAFEILAENYEFKENEGCAVTFLRAASVLKSLPFTIITMRDTEGIPCLEDKVK 222
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 327
I+EI+ G+ S+++ DE+ ++ LF V+G+G T++K + G RTL ++++ S
Sbjct: 223 CIIEEIIEDGESSEVKAVLNDERYQSFKLFTSVFGVGLKTSEKWFRMGFRTLSKIRSDKS 282
Query: 328 LTHS--QRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 385
LT + QR G Y++D+ + + R E E + L+++A LP+ + G +RRGK
Sbjct: 283 LTFTRMQRAGFHYYEDLVSCVTRAEAEAVSVLVKEAVWAFLPDAFVTMTGGFRRGKKIGH 342
Query: 386 DLDVVIMHP--DRKSHKGFLSKYVKKLKEMK--FLREDLIFSTHSEEGTDS-GVDT--YF 438
D+D +I P + + L K V L E K L DL+ ST + S VD +F
Sbjct: 343 DVDFLITSPGSTEEEEEQLLHK-VMNLWEKKGLLLYCDLVESTFEKLKLPSRKVDALDHF 401
Query: 439 GLCTYPGRELRH--------------------RIDFKVYPRDIYAFGLIAWTGNDVLNRR 478
C + +L H R+D + P + AF L+ WTG+ R
Sbjct: 402 QKC-FLILKLHHQRVVDSQKSSQQDGKTWKAIRVDLVMCPYERRAFALLGWTGSRQFERD 460
Query: 479 LRLLA-ESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 537
LR A + LD+ GL+ T R LK ++E+E+F LG ++EP ERN
Sbjct: 461 LRRYATHERRMMLDNHGLWDKT----------KRIFLKAESEEEIFAHLGLDYIEPSERN 510
>sp|P06526|TDT_BOVIN DNA nucleotidylexotransferase OS=Bos taurus GN=DNTT PE=1 SV=2
Length = 509
Score = 119 bits (298), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 96/330 (29%), Positives = 161/330 (48%), Gaps = 38/330 (11%)
Query: 235 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTI 294
++ +A V++ LPF I S +G+P +G ++ I+EI+ G+ S+++ DE+ ++
Sbjct: 190 TFMRAASVLKSLPFTIISMKDTEGIPCLGDKVKCIIEEIIEDGESSEVKAVLNDERYQSF 249
Query: 295 SLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSL--THSQRLGLKYFDDIKTRIPRHEVE 352
LF V+G+G T++K + G R+L + ++ +L T Q+ G Y++D+ + + R E E
Sbjct: 250 KLFTSVFGVGLKTSEKWFRMGFRSLSKIMSDKTLKFTKMQKAGFLYYEDLVSCVTRAEAE 309
Query: 353 QMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKE 412
+ L+++A LP+ + G +RRGK D+D +I P + L V L E
Sbjct: 310 AVGVLVKEAVWAFLPDAFVTMTGGFRRGKKIGHDVDFLITSPGSAEDEEQLLPKVINLWE 369
Query: 413 MK--FLREDLIFSTHSEEGTDS-GVDT--YFGLCTYPGRELRH----------------- 450
K L DL+ ST + S VDT +F C + +L H
Sbjct: 370 KKGLLLYYDLVESTFEKFKLPSRQVDTLDHFQKC-FLILKLHHQRVDSSKSNQQEGKTWK 428
Query: 451 --RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLA-ESKGYRLDDTGLFPATYGSGGKQG 507
R+D + P + AF L+ WTG+ R +R A + LD+ L+ T
Sbjct: 429 AIRVDLVMCPYENRAFALLGWTGSRQFERDIRRYATHERKMMLDNHALYDKT-------- 480
Query: 508 VRARTSLKFDTEKEVFDFLGFPWLEPHERN 537
R LK ++E+E+F LG ++EP ERN
Sbjct: 481 --KRVFLKAESEEEIFAHLGLDYIEPWERN 508
>sp|P36195|TDT_CHICK DNA nucleotidylexotransferase OS=Gallus gallus GN=DNTT PE=2 SV=1
Length = 506
Score = 119 bits (297), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 96/357 (26%), Positives = 169/357 (47%), Gaps = 41/357 (11%)
Query: 208 DLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
+ NK T+ F + Y + + +A V++ LPF + ++GLP +G ++
Sbjct: 163 NCNKKFTDAFEIMAENYEFKENEIFCLEFLRAASVLKSLPFPVTRMKDIQGLPCMGDRVR 222
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 327
D I+EI+ G+ S+ + DE+ ++ F V+G+G T++K + G RT++++K + +
Sbjct: 223 DVIEEIIEEGESSRAKDVLNDERYKSFKEFTSVFGVGVKTSEKWFRMGLRTVEEVKADKT 282
Query: 328 LTHS--QRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 385
L S QR G Y++D+ + + + E + + +++ LP+ ++ G +RRGK
Sbjct: 283 LKLSKMQRAGFLYYEDLVSCVSKAEADAVSSIVKNTVCTFLPDALVTITGGFRRGKKIGH 342
Query: 386 DLDVVIMHPDRKS-----HKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGL 440
D+D +I P ++ HKG L + E F++E I S H + D + L
Sbjct: 343 DIDFLITSPGQREDDELLHKGLL--LYCDIIESTFVKEQ-IPSRHV-DAMDHFQKCFAIL 398
Query: 441 CTYPGR---------------ELRH----RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRL 481
Y R E++ R+D + P + YA+ L+ WTG+ R LR
Sbjct: 399 KLYQPRVDNSSYNMSKKCDMAEVKDWKAIRVDLVITPFEQYAYALLGWTGSRQFGRDLRR 458
Query: 482 LA-ESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 537
A + LD+ L+ R R LK +E+E+F LG ++EP ERN
Sbjct: 459 YATHERKMMLDNHALYDK----------RKRVFLKAGSEEEIFAHLGLDYVEPWERN 505
>sp|Q09693|DPO4_SCHPO DNA polymerase type-X family protein pol4 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=pol4 PE=3 SV=1
Length = 506
Score = 110 bits (275), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 84/334 (25%), Positives = 154/334 (46%), Gaps = 12/334 (3%)
Query: 211 KNITEIFGKLINIYRAL----GEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSM 266
K + + F +++ + GE R+ +Y AI I+ P I+SA+Q++ +PG G +
Sbjct: 176 KCVNQAFVNALSVLKTCREVNGESVRTRAYGMAIATIKAFPLPIDSAEQLEKMPGCGPKI 235
Query: 267 QDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNE 325
+E +TG L + E F+KD + + LF ++G+G + A + Y+KG RT++ + K++
Sbjct: 236 VHLWKEFASTGTLKEAEEFQKDPASKILLLFYNIFGVGASHAAEWYQKGWRTIEQVRKHK 295
Query: 326 DSLTHSQRLGLKYFDD-IKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASC 384
DS T ++GL++++D KT E E ++ + + + + ++ G +RRGK
Sbjct: 296 DSFTKQIKVGLEFYEDFCKTVTIEEATEIYETIVSRMPDGIKIQSCLV--GGFRRGKPVG 353
Query: 385 GDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYP 444
D+D+V+ S K + ++ L E +F + HS G V +
Sbjct: 354 ADVDMVLSPSHTHSTKHLVDVLLRILDE-EFQFRLISVQEHSCGGKKGYV--MLAVILSN 410
Query: 445 GRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESK-GYRLDDTGLFPATYGSG 503
++ R+D V P ++ W+G R L+L A S G D + G
Sbjct: 411 SSKINRRVDIIVVPPAYIGSAVLGWSGGIFFLRDLKLYANSHLGLSYDSFEIINLKTGKD 470
Query: 504 GKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 537
+ EK++F + ++EP RN
Sbjct: 471 ICPDEFNEWKDPVEAEKDIFRYFSLEYIEPKFRN 504
>sp|P25615|DPO4_YEAST DNA polymerase IV OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=POL4 PE=1 SV=4
Length = 582
Score = 63.5 bits (153), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 86/346 (24%), Positives = 139/346 (40%), Gaps = 63/346 (18%)
Query: 65 DLEALLQQVSKQHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQ 124
D++ L ++ + + K S I +W+++ +K +DL IK P I+D
Sbjct: 77 DVDEFLGKIEQSGIQCVKTSCIT-KWVQNDKFAFQK--DDL--IKFQPSIIVISD----- 126
Query: 125 IQGNGNTSSDGESSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPNSPM--SSESLTNT 182
+ DG+SS K+ + ST DVE+ ++ N M +S+ L
Sbjct: 127 ------NADDGQSSTDKESEIST------------DVESERNDDSNNKDMIQASKPLKRL 168
Query: 183 LSTASASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPV 242
L +TD + N N+ I +L Y GE R+ SY A
Sbjct: 169 LQGDKGRASL----VTDKTKYKN----NELIIGALKRLTKKYEIEGEKFRARSYRLAKQS 220
Query: 243 IEKLPFKIESADQV-KGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVW 301
+E F + S ++ L IG S+ IQ I+ TG L L E + F +
Sbjct: 221 MENCDFNVRSGEEAHTKLRNIGPSIAKKIQVILDTGVLPGLNDSVGLED--KLKYFKNCY 278
Query: 302 GIGPATAQKLYEKGHRTLDDLKNEDSLTHSQR-------------LGLKYFDDIKTRIPR 348
GIG A++ +L N +S + + G Y+DD ++ R
Sbjct: 279 GIGSEIAKRW---------NLLNFESFCVAAKKDPEEFVSDWTILFGWSYYDDWLCKMSR 329
Query: 349 HEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHP 394
+E + +QKA + PE + GSY RG + CGD+D++ P
Sbjct: 330 NECFTHLKKVQKALRGIDPECQVELQGSYNRGYSKCGDIDLLFFKP 375
Score = 50.8 bits (120), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 60/133 (45%), Gaps = 14/133 (10%)
Query: 407 VKKLKEMKFLREDLIFSTHSEEGTD-SGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFG 465
+++LKEMK L+ EE T +D Y L G R R+DF D G
Sbjct: 456 LEELKEMKNDEGTLLIEEEEEEETKLKPIDQYMSLNAKDGNYCR-RLDFFCCKWDELGAG 514
Query: 466 LIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDF 525
I +TG+ NR +R+LA KG++L GLF R L+ E+ +F+
Sbjct: 515 RIHYTGSKEYNRWIRILAAQKGFKLTQHGLF------------RNNILLESFNERRIFEL 562
Query: 526 LGFPWLEPHERNL 538
L + EP RN+
Sbjct: 563 LNLKYAEPEHRNI 575
>sp|P94544|POLX_BACSU DNA polymerase/3'-5' exonuclease PolX OS=Bacillus subtilis (strain
168) GN=polX PE=1 SV=1
Length = 570
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 73/334 (21%), Positives = 129/334 (38%), Gaps = 51/334 (15%)
Query: 221 INIYRALGEDR--RSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGK 278
I +Y L D + ++ KA +E+ + D + L GIGK I+E + GK
Sbjct: 13 IAVYMELKGDNPFKVSAFRKAAAALEQDDRSLSEMDDMMSLSGIGKGTYSVIKEYIDEGK 72
Query: 279 LSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-EKGHRTLDDLKNEDSLTHSQRLG-- 335
S LE +K+ + L ++ G+G KLY E G + LK Q L
Sbjct: 73 SSTLESLQKEVPEGLVPLL-KLPGLGGKKIAKLYKELGVHDAESLKEACEQQKVQGLAGF 131
Query: 336 --------LKYFDDIKTRIPRHEVEQMERLLQKAGEEV--LPEVIILC-GGSYRRGKASC 384
L+ + + R + R+ ++ E + +I GS RR + +
Sbjct: 132 GKKSEEKILQALGEAGKQPERFPIGYALRIAREIEEHLSQFTHIIKFSRAGSLRRARETV 191
Query: 385 GDLDVVIM--HPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCT 442
DLD +I HP +RE L+ + + SG + +
Sbjct: 192 KDLDYIIATDHPAE-------------------VREQLLELPNIKSVIASGDTKVSVILS 232
Query: 443 YPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGS 502
+ E +DF++ + + L +TG+ N ++R +A+ +G R+ + G+
Sbjct: 233 F---EYETSVDFRLVTEEQFPTTLHHFTGSKDHNIKMRQIAKERGERISEYGV------- 282
Query: 503 GGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 536
+ V F +E+E + G P + P R
Sbjct: 283 ---ETVETGEIKTFPSEREFYAHFGLPLIPPEIR 313
>sp|Q6LPL4|MUKE_PHOPR Chromosome partition protein MukE OS=Photobacterium profundum
GN=mukE PE=3 SV=3
Length = 235
Score = 34.7 bits (78), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 53/220 (24%), Positives = 84/220 (38%), Gaps = 42/220 (19%)
Query: 305 PATAQKLYEKGHRTLDDLKNEDSLTHSQR-LGLKY--FDDIKTRIPRHEVEQMERLLQKA 361
PA L H + +DL N L +R LG+ Y ++ R P R
Sbjct: 15 PALDNALRSGRHVSSEDLDNHALLIEFERELGMFYRRYNTELIRAPEGFFYLRPRSTSLI 74
Query: 362 GEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLRED-- 419
G VL E+ +L G K C + + P+R +H+G + + E+ L ++
Sbjct: 75 GRSVLSEIDMLVG------KVLC----FLYLSPERLAHEGIFTNQ-ELFDELLVLADEKK 123
Query: 420 -LIFSTHSEEGTDSGVDTYFGLCTYPGRELRHRIDFKV---------YPRDIYAFGLIAW 469
+ F TH G+D + + R LR RI + ++ FG
Sbjct: 124 LMKFVTHRASGSDLDREKLYDKVKTSLRRLR-RIGMLIPIGENGKFRISESVFRFGADVR 182
Query: 470 TGNDVLNRRLRLLAESK---------------GYRLDDTG 494
TG+DV +LRL+ + + G+ DDTG
Sbjct: 183 TGDDVREAQLRLIRDGEAVVHQQEPSQSSLLDGFDADDTG 222
>sp|Q9LL84|DNLI4_ARATH DNA ligase 4 OS=Arabidopsis thaliana GN=LIG4 PE=1 SV=1
Length = 1219
Score = 34.7 bits (78), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 83/193 (43%), Gaps = 35/193 (18%)
Query: 30 GVQNRRLQIWRQKLVQMGATVEEKLSKKVTH--VLAMDLEAL--------LQQVSKQHLA 79
G+ +RL + +++ G V L+ +H VLAM E L ++ K+ L
Sbjct: 825 GIMAKRLML---EVLMAGGKVSNNLAH-ASHLVVLAMAEEPLDFTLVSKSFSEMEKRLLL 880
Query: 80 RFKGSVIRYQWLEDSLRLGEKVSEDLYRIK------LDPEGENIADRVLSQIQGNGN--- 130
+ + V+ WLE+SL+ EK+ ED+Y ++ D E + ++ +++ G+
Sbjct: 881 KKRLHVVSSHWLEESLQREEKLCEDVYTLRPKYMEESDTEESDKSEHDTTEVASQGSAQT 940
Query: 131 ----------TSSDGESSHR--KKIKSSTEDVEHFQAESKGDVETNALSEAPNSPMSSES 178
TSS G S+ R K+ +SST ++ Q + E S S E
Sbjct: 941 KEPASSKIAITSSRGRSNTRAVKRGRSSTNSLQRVQRRRGKQPSKISGDETEESDASEEK 1000
Query: 179 LTNTLSTASASPD 191
++ LS + D
Sbjct: 1001 VSTRLSDIAEETD 1013
>sp|Q6NGD8|DPO4_CORDI DNA polymerase IV OS=Corynebacterium diphtheriae (strain ATCC
700971 / NCTC 13129 / Biotype gravis) GN=dinB PE=3 SV=1
Length = 451
Score = 34.3 bits (77), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 65/156 (41%), Gaps = 24/156 (15%)
Query: 258 GLP-----GIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY 312
GLP G GK + ++ + E +EK+ + + G +WG+GP T KL
Sbjct: 137 GLPASVGGGAGKQVAKICSDLAKPDGIYLCAASEHEEKMYPLPV-GRLWGVGPVTRTKLQ 195
Query: 313 EKGHRTLDDLKNEDSLTHSQRLGLKYFD-DIKTRIPRHEVEQMERLLQKAGE-EVLPEVI 370
+ G T+ DL R+ + D + T + R + RL Q + EV P I
Sbjct: 196 QLGVETIGDLA---------RMSEREIDISLGTTVGR----SLWRLAQGHDDREVAPRAI 242
Query: 371 ---ILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFL 403
I +Y + + +D I+ R+SH+ L
Sbjct: 243 AKQISVEHTYPKDLVTSRAVDTAIIRASRESHRRLL 278
>sp|Q6BHN9|SNX41_DEBHA Sorting nexin-41 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS
767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=SNX41 PE=3
SV=2
Length = 670
Score = 33.5 bits (75), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
Query: 171 NSPMSSESLTNTLSTASASPDF-SSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGE 229
N+ SS+ T T S + SPDF + +I D S L D+NK I F L N Y LG
Sbjct: 356 NTEASSQPSTGTTSPVNHSPDFIKNKYIIDNSCL---DDINKKIMANFIGLANDYTELGT 412
Query: 230 DRRSFS 235
SFS
Sbjct: 413 IFNSFS 418
>sp|P04152|UMUC_ECOLI Protein UmuC OS=Escherichia coli (strain K12) GN=umuC PE=1 SV=2
Length = 422
Score = 33.1 bits (74), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 28/51 (54%)
Query: 276 TGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED 326
TG + L + E+ K+ + +VWGIG ++KL G +T+ DL + D
Sbjct: 160 TGGVVDLSNLERQRKLMSALPVDDVWGIGRRISKKLDAMGIKTVLDLADTD 210
>sp|Q9JYS8|DPO4_NEIMB DNA polymerase IV OS=Neisseria meningitidis serogroup B (strain
MC58) GN=dinB PE=3 SV=1
Length = 318
Score = 33.1 bits (74), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
Query: 297 FGEVWGIGPATAQKLYEKGHRTLDDLKNEDS---LTHSQRLGLKYFDDIKTRIPRHEVEQ 353
G++ G+G T +K+ G RT DL+ + L H R G + +D ++ R +
Sbjct: 179 LGKIPGVGKVTLKKMQSLGMRTAGDLRRFERGELLNHFGRYGYRLYDLVRGTDERPVKAE 238
Query: 354 MERLLQKAGEEVLPE 368
ER LQ + E LPE
Sbjct: 239 RER-LQISTEITLPE 252
>sp|Q7TT79|MCPH1_MOUSE Microcephalin OS=Mus musculus GN=Mcph1 PE=2 SV=1
Length = 822
Score = 32.7 bits (73), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
Query: 29 KGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLEALLQQVSKQHLARFKGSVIRY 88
KG +N +Q L MGATV + L+K+VTHV+ D Q + + ++
Sbjct: 25 KGTENYSRTFAKQ-LEDMGATVSKTLNKQVTHVIFKD----GYQSTWDKAQKTGAKLVSV 79
Query: 89 QWLEDSLRLGEKVSEDLY 106
W+E G V E L+
Sbjct: 80 LWVEKCRMAGALVDESLF 97
>sp|Q04350|POLB_CHPVE ORFB polyprotein OS=Cryphonectria hypovirus 1 (strain EP713) PE=1
SV=1
Length = 3165
Score = 32.7 bits (73), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Query: 267 QDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIG--PATAQKLYEKGHRTLDDLKN 324
+DH++ I+T+GKL H D ++ + WGIG P + Y ++D +
Sbjct: 3041 EDHLERILTSGKLRYANHIPVDMAMQLLGNGHVTWGIGGVPTITRPRYPCDGMWVEDPSS 3100
Query: 325 EDSLTH 330
S H
Sbjct: 3101 RKSYAH 3106
>sp|A1KUQ3|DPO4_NEIMF DNA polymerase IV OS=Neisseria meningitidis serogroup C / serotype
2a (strain ATCC 700532 / FAM18) GN=dinB PE=3 SV=1
Length = 352
Score = 32.7 bits (73), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
Query: 297 FGEVWGIGPATAQKLYEKGHRTLDDLKNEDS---LTHSQRLGLKYFDDIKTRIPRHEVEQ 353
G++ G+G T +K+ G RT DL+ + L H R G + +D ++ R +
Sbjct: 179 LGKIPGVGKVTLKKMQSLGMRTAGDLRRFERGELLNHFGRYGYRLYDLVRGTDERPVKAE 238
Query: 354 MERLLQKAGEEVLPE 368
ER LQ + E LPE
Sbjct: 239 RER-LQISTEITLPE 252
>sp|A4QFK8|DPO4_CORGB DNA polymerase IV OS=Corynebacterium glutamicum (strain R) GN=dinB
PE=3 SV=1
Length = 467
Score = 32.3 bits (72), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 46/98 (46%), Gaps = 18/98 (18%)
Query: 298 GEVWGIGPATAQKLYEKGHRTLDDL----KNEDSLTHSQRLGLKYFD-----DIKTRIPR 348
G +WG+GP T KL G T+ DL + E ++ +G+ ++ D + PR
Sbjct: 181 GALWGVGPVTGSKLASMGVETIGDLAALTQKEVEISLGATIGISLWNLARGIDDRPVEPR 240
Query: 349 HEVEQMER-------LLQKAGEEVLPEVIILCGGSYRR 379
E +Q+ + LL + ++V +I G++RR
Sbjct: 241 AEAKQISQEHTYEKDLLTR--QQVDAAIIRSAEGAHRR 276
>sp|Q8NNP4|DPO4_CORGL DNA polymerase IV OS=Corynebacterium glutamicum (strain ATCC 13032
/ DSM 20300 / JCM 1318 / LMG 3730 / NCIMB 10025) GN=dinB
PE=3 SV=1
Length = 467
Score = 32.3 bits (72), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 46/98 (46%), Gaps = 18/98 (18%)
Query: 298 GEVWGIGPATAQKLYEKGHRTLDDL----KNEDSLTHSQRLGLKYFD-----DIKTRIPR 348
G +WG+GP T KL G T+ DL + E ++ +G+ ++ D + PR
Sbjct: 181 GALWGVGPVTGSKLASMGVETIGDLAALTQKEVEISLGATIGISLWNLARGIDDRPVEPR 240
Query: 349 HEVEQMER-------LLQKAGEEVLPEVIILCGGSYRR 379
E +Q+ + LL + ++V +I G++RR
Sbjct: 241 AEAKQISQEHTYEKDLLTR--QQVDAAIIRSAEGAHRR 276
>sp|P0CW91|RADA_AERPX DNA repair and recombination protein RadA OS=Aeropyrum pernix
GN=radA PE=3 SV=1
Length = 319
Score = 32.3 bits (72), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 25/48 (52%)
Query: 289 EKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGL 336
E R I ++ G+GP TAQKL E G+ TL+ + SQ G+
Sbjct: 3 EDKREIKDITDLPGVGPTTAQKLMEAGYTTLEAIAAATPQEVSQATGI 50
>sp|P0CW92|RADA_AERPE DNA repair and recombination protein RadA OS=Aeropyrum pernix
(strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138
/ K1) GN=radA PE=3 SV=1
Length = 319
Score = 32.3 bits (72), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 25/48 (52%)
Query: 289 EKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGL 336
E R I ++ G+GP TAQKL E G+ TL+ + SQ G+
Sbjct: 3 EDKREIKDITDLPGVGPTTAQKLMEAGYTTLEAIAAATPQEVSQATGI 50
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.135 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 208,690,249
Number of Sequences: 539616
Number of extensions: 9177477
Number of successful extensions: 30180
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 68
Number of HSP's that attempted gapping in prelim test: 30030
Number of HSP's gapped (non-prelim): 147
length of query: 538
length of database: 191,569,459
effective HSP length: 122
effective length of query: 416
effective length of database: 125,736,307
effective search space: 52306303712
effective search space used: 52306303712
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)