Query 009303
Match_columns 538
No_of_seqs 326 out of 950
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 23:26:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009303.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009303hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ihm_A POL MU, DNA polymerase 100.0 5.9E-83 2E-87 667.4 33.0 321 207-538 14-360 (360)
2 2bcq_A DNA polymerase lambda; 100.0 4.7E-83 1.6E-87 662.2 31.1 328 202-538 5-335 (335)
3 1jms_A Terminal deoxynucleotid 100.0 1.7E-82 5.8E-87 667.6 33.7 321 207-538 33-381 (381)
4 2fmp_A DNA polymerase beta; nu 100.0 1.1E-79 3.9E-84 637.2 32.7 315 208-538 10-335 (335)
5 3b0x_A DNA polymerase beta fam 100.0 5.6E-62 1.9E-66 539.3 25.9 295 208-537 1-315 (575)
6 2w9m_A Polymerase X; SAXS, DNA 100.0 2.6E-59 8.7E-64 518.0 25.1 282 207-537 7-305 (578)
7 1jaj_A DNA polymerase beta-lik 100.0 4.4E-42 1.5E-46 323.0 -0.6 166 334-537 6-174 (174)
8 2dun_A POL MU, DNA polymerase 99.9 7.2E-27 2.5E-31 207.1 9.4 98 12-109 4-107 (133)
9 2coe_A Deoxynucleotidyltransfe 99.9 2.3E-24 7.8E-29 190.0 10.1 101 10-110 12-116 (120)
10 2jw5_A DNA polymerase lambda; 99.8 4.7E-22 1.6E-26 172.6 1.9 98 13-111 6-106 (106)
11 1wf6_A Similar to S.pombe -RAD 99.6 6E-15 2.1E-19 132.7 9.3 93 13-109 35-127 (132)
12 3pa6_A Microcephalin; BRCT dom 99.6 4.8E-15 1.7E-19 128.5 7.7 91 17-111 6-98 (107)
13 1vq8_Y 50S ribosomal protein L 99.5 1.4E-16 4.8E-21 156.9 -5.5 177 295-492 15-231 (241)
14 3ii6_X DNA ligase 4; XRCC4, NH 99.5 3E-14 1E-18 142.7 9.0 93 14-108 160-263 (263)
15 4id3_A DNA repair protein REV1 99.5 1.3E-13 4.4E-18 115.4 8.0 88 13-108 2-91 (92)
16 2ebw_A DNA repair protein REV1 99.4 3.4E-13 1.2E-17 114.4 7.6 91 10-109 4-96 (97)
17 3l3e_A DNA topoisomerase 2-bin 99.3 1.9E-12 6.6E-17 111.9 5.3 93 14-111 11-105 (107)
18 2d8m_A DNA-repair protein XRCC 99.3 4.1E-12 1.4E-16 113.7 7.0 97 10-112 14-110 (129)
19 3pc6_A DNA repair protein XRCC 99.2 2.1E-11 7.1E-16 104.9 8.6 90 16-109 5-95 (104)
20 2cou_A ECT2 protein; BRCT doma 99.2 3.3E-12 1.1E-16 111.0 3.7 88 16-109 10-97 (109)
21 2ep8_A Pescadillo homolog 1; A 99.1 4.2E-11 1.4E-15 102.4 6.4 84 12-107 6-100 (100)
22 3l46_A Protein ECT2; alternati 99.1 4.2E-11 1.4E-15 104.5 4.9 88 17-110 20-107 (112)
23 1z56_C DNA ligase IV; DNA repa 99.1 2E-11 6.7E-16 121.8 2.9 95 13-108 155-261 (264)
24 2kp7_A Crossover junction endo 99.0 7.8E-10 2.7E-14 91.9 7.7 68 208-276 13-80 (87)
25 2nte_A BARD-1, BRCA1-associate 98.9 9.3E-10 3.2E-14 105.9 7.5 81 26-109 5-87 (210)
26 1t15_A Breast cancer type 1 su 98.9 1.2E-09 4.1E-14 104.9 5.7 82 25-109 6-92 (214)
27 3pc7_A DNA ligase 3; DNA repai 98.9 1.4E-09 4.9E-14 90.3 4.4 74 15-103 13-87 (88)
28 1l0b_A BRCA1; TANDEM-BRCT, thr 98.8 2.9E-09 9.8E-14 103.6 6.8 88 17-109 3-95 (229)
29 3ef0_A RNA polymerase II subun 98.7 8.6E-09 2.9E-13 107.8 7.2 90 16-108 280-371 (372)
30 3ii6_X DNA ligase 4; XRCC4, NH 98.7 1.5E-08 5.1E-13 101.2 7.9 93 12-109 4-96 (263)
31 3olc_X DNA topoisomerase 2-bin 98.7 1.8E-08 6.1E-13 102.5 8.3 90 15-110 196-286 (298)
32 1kzy_C Tumor suppressor P53-bi 98.6 1.1E-07 3.8E-12 94.7 8.2 97 10-109 7-136 (259)
33 3ef1_A RNA polymerase II subun 98.5 6.2E-08 2.1E-12 102.9 6.7 89 16-108 350-441 (442)
34 3u3z_A Microcephalin; DNA repa 98.5 7.6E-08 2.6E-12 92.1 6.4 81 26-109 14-95 (199)
35 3sqd_A PAX-interacting protein 98.5 8.4E-08 2.9E-12 93.2 6.2 85 19-109 14-98 (219)
36 3al2_A DNA topoisomerase 2-bin 98.5 2E-07 6.8E-12 91.6 7.1 85 20-109 8-94 (235)
37 2etx_A Mediator of DNA damage 98.4 2.4E-07 8.3E-12 89.1 5.7 84 17-109 8-91 (209)
38 3olc_X DNA topoisomerase 2-bin 98.3 8E-07 2.7E-11 90.3 7.2 88 13-106 100-187 (298)
39 1l0b_A BRCA1; TANDEM-BRCT, thr 98.2 1.6E-06 5.5E-11 84.0 7.0 93 16-109 115-213 (229)
40 2vxb_A DNA repair protein RHP9 98.2 1.6E-06 5.6E-11 85.3 6.7 90 18-110 2-118 (241)
41 1z56_C DNA ligase IV; DNA repa 98.1 1.8E-07 6.1E-12 93.0 -1.3 90 15-109 2-101 (264)
42 1kzy_C Tumor suppressor P53-bi 98.1 2.1E-06 7E-11 85.5 6.1 88 15-106 152-249 (259)
43 1t15_A Breast cancer type 1 su 98.1 1.6E-06 5.6E-11 82.8 4.8 94 15-109 112-211 (214)
44 3l41_A BRCT-containing protein 98.1 1.1E-06 3.6E-11 85.5 2.3 66 40-109 22-87 (220)
45 3u3z_A Microcephalin; DNA repa 98.0 3E-06 1E-10 81.0 3.8 82 15-108 116-197 (199)
46 2vxb_A DNA repair protein RHP9 97.9 9.5E-06 3.2E-10 79.8 5.9 80 16-103 149-241 (241)
47 2etx_A Mediator of DNA damage 97.7 4.5E-05 1.5E-09 73.1 6.7 89 16-110 113-203 (209)
48 2edu_A Kinesin-like protein KI 97.6 4.4E-05 1.5E-09 64.5 4.6 57 252-322 38-95 (98)
49 2nte_A BARD-1, BRCA1-associate 97.5 5.8E-05 2E-09 72.2 4.4 85 16-104 102-209 (210)
50 2duy_A Competence protein come 97.2 8.5E-05 2.9E-09 59.5 1.5 46 253-313 26-71 (75)
51 3arc_U Photosystem II 12 kDa e 97.1 0.00055 1.9E-08 57.7 4.9 47 252-313 24-70 (97)
52 1s5l_U Photosystem II 12 kDa e 97.0 0.00073 2.5E-08 59.8 5.1 46 252-312 61-106 (134)
53 3al2_A DNA topoisomerase 2-bin 96.9 0.00089 3E-08 65.4 5.5 91 16-109 133-229 (235)
54 2l42_A DNA-binding protein RAP 96.9 0.0013 4.5E-08 54.9 5.4 85 15-111 8-97 (106)
55 2k6g_A Replication factor C su 96.8 0.0061 2.1E-07 52.4 9.8 81 15-99 29-109 (109)
56 2cok_A Poly [ADP-ribose] polym 96.7 0.0029 9.8E-08 54.8 6.4 86 16-105 8-104 (113)
57 1l7b_A DNA ligase; BRCT, autos 96.6 0.0023 7.8E-08 53.4 4.9 77 15-97 4-80 (92)
58 1x2i_A HEF helicase/nuclease; 96.5 0.003 1E-07 49.8 4.8 51 254-313 14-64 (75)
59 1ixr_A Holliday junction DNA h 96.3 0.0025 8.5E-08 60.3 4.1 53 255-313 73-125 (191)
60 2ebu_A Replication factor C su 96.3 0.014 4.7E-07 50.5 8.4 78 16-97 20-97 (112)
61 2i5h_A Hypothetical protein AF 96.3 0.0033 1.1E-07 59.4 4.7 58 231-306 115-173 (205)
62 1kft_A UVRC, excinuclease ABC 96.2 0.004 1.4E-07 50.0 4.2 51 254-313 24-74 (78)
63 2ztd_A Holliday junction ATP-d 96.1 0.0035 1.2E-07 60.2 4.2 53 255-313 89-141 (212)
64 2duy_A Competence protein come 96.1 0.0036 1.2E-07 49.9 3.3 46 293-344 25-71 (75)
65 1z00_A DNA excision repair pro 96.0 0.0083 2.8E-07 49.3 5.3 52 254-314 19-70 (89)
66 1cuk_A RUVA protein; DNA repai 96.0 0.0035 1.2E-07 59.9 3.5 52 255-313 74-126 (203)
67 3arc_U Photosystem II 12 kDa e 96.0 0.0017 5.7E-08 54.8 1.0 47 293-345 24-71 (97)
68 2owo_A DNA ligase; protein-DNA 96.0 0.012 4E-07 65.7 7.9 84 254-347 480-565 (671)
69 1dgs_A DNA ligase; AMP complex 95.8 0.0072 2.5E-07 67.3 5.6 83 254-346 475-559 (667)
70 2a1j_B DNA excision repair pro 95.8 0.0097 3.3E-07 49.2 5.0 51 254-313 32-82 (91)
71 3qbz_A DDK kinase regulatory s 95.6 0.0092 3.1E-07 54.2 4.3 48 17-64 57-115 (160)
72 3oq0_A DBF4, protein DNA52; DD 95.5 0.02 6.7E-07 51.6 5.9 47 18-64 21-77 (151)
73 2a1j_B DNA excision repair pro 95.4 0.012 4.1E-07 48.6 4.0 52 290-342 27-80 (91)
74 3sqd_A PAX-interacting protein 95.3 0.029 9.8E-07 54.0 7.1 85 16-108 120-218 (219)
75 1s5l_U Photosystem II 12 kDa e 95.1 0.0073 2.5E-07 53.5 2.0 40 293-338 61-101 (134)
76 3oq4_A DBF4, protein DNA52; DD 95.1 0.036 1.2E-06 49.0 6.3 48 17-64 3-60 (134)
77 1z00_A DNA excision repair pro 95.0 0.018 6.3E-07 47.2 3.9 48 291-339 15-64 (89)
78 3bqs_A Uncharacterized protein 95.0 0.015 5.2E-07 48.5 3.3 31 296-326 5-35 (93)
79 3nyb_A Poly(A) RNA polymerase 94.6 0.31 1.1E-05 49.5 12.9 124 355-489 46-177 (323)
80 1kft_A UVRC, excinuclease ABC 94.5 0.0088 3E-07 47.9 0.7 48 294-342 23-72 (78)
81 1x2i_A HEF helicase/nuclease; 94.4 0.019 6.4E-07 45.1 2.5 49 293-342 12-62 (75)
82 2bgw_A XPF endonuclease; hydro 94.2 0.045 1.6E-06 52.4 5.1 51 255-314 163-213 (219)
83 4b21_A Probable DNA-3-methylad 94.0 0.08 2.7E-06 51.4 6.5 62 254-316 107-171 (232)
84 2i5h_A Hypothetical protein AF 93.8 0.025 8.5E-07 53.4 2.4 76 268-343 104-186 (205)
85 3mab_A Uncharacterized protein 93.5 0.052 1.8E-06 45.2 3.6 31 296-326 5-35 (93)
86 3s6i_A DNA-3-methyladenine gly 93.5 0.1 3.6E-06 50.4 6.4 56 261-316 102-160 (228)
87 2w9m_A Polymerase X; SAXS, DNA 93.4 0.049 1.7E-06 59.9 4.4 53 252-311 95-147 (578)
88 1vq8_Y 50S ribosomal protein L 93.2 0.016 5.5E-07 56.7 0.0 54 253-314 14-67 (241)
89 4glx_A DNA ligase; inhibitor, 93.1 0.096 3.3E-06 57.5 6.0 83 254-346 480-564 (586)
90 1ylq_A Putative nucleotidyltra 92.8 0.27 9.2E-06 40.7 7.1 31 365-395 14-46 (96)
91 1u9l_A Transcription elongatio 92.8 0.056 1.9E-06 42.6 2.6 51 293-343 4-56 (70)
92 2ztd_A Holliday junction ATP-d 92.7 0.029 1E-06 53.8 1.1 52 291-342 84-139 (212)
93 2a1j_A DNA repair endonuclease 92.6 0.099 3.4E-06 40.2 3.8 30 295-325 4-33 (63)
94 3b0x_A DNA polymerase beta fam 92.1 0.085 2.9E-06 57.9 4.0 55 252-312 91-145 (575)
95 1ixr_A Holliday junction DNA h 91.9 0.051 1.7E-06 51.3 1.6 51 292-342 69-123 (191)
96 1z00_B DNA repair endonuclease 91.7 0.16 5.6E-06 41.4 4.2 34 291-325 14-47 (84)
97 1cuk_A RUVA protein; DNA repai 91.3 0.063 2.2E-06 51.1 1.6 51 292-342 70-124 (203)
98 1dgs_A DNA ligase; AMP complex 91.3 0.055 1.9E-06 60.3 1.3 49 299-347 445-496 (667)
99 3fhg_A Mjogg, N-glycosylase/DN 91.2 2.2 7.6E-05 40.3 12.4 124 238-365 50-186 (207)
100 2owo_A DNA ligase; protein-DNA 91.0 0.037 1.3E-06 61.7 -0.5 49 298-346 449-500 (671)
101 2rff_A Putative nucleotidyltra 90.9 0.98 3.3E-05 38.5 8.6 41 354-395 19-61 (111)
102 1wcn_A Transcription elongatio 90.8 0.12 4.2E-06 40.6 2.5 29 297-325 9-37 (70)
103 4gfj_A Topoisomerase V; helix- 90.6 0.16 5.4E-06 52.8 3.9 49 294-343 467-525 (685)
104 3l41_A BRCT-containing protein 90.5 0.46 1.6E-05 45.6 6.9 84 16-100 111-206 (220)
105 2yg9_A DNA-3-methyladenine gly 89.7 0.52 1.8E-05 45.3 6.5 54 261-315 110-166 (225)
106 2a1j_A DNA repair endonuclease 89.3 0.32 1.1E-05 37.2 3.8 49 254-313 4-53 (63)
107 4dez_A POL IV 1, DNA polymeras 88.9 0.21 7.1E-06 51.3 3.2 30 297-326 180-209 (356)
108 1b22_A DNA repair protein RAD5 88.7 0.15 5E-06 44.1 1.6 47 293-340 24-72 (114)
109 1q79_A Poly(A) polymerase alph 88.7 3.6 0.00012 44.4 12.9 52 366-417 92-144 (514)
110 2edu_A Kinesin-like protein KI 88.5 0.23 7.8E-06 41.4 2.6 43 294-342 39-86 (98)
111 3t7k_A RTT107, regulator of TY 88.3 0.32 1.1E-05 47.4 3.9 67 41-109 41-119 (256)
112 4e8f_A Poly(A) RNA polymerase 88.2 0.84 2.9E-05 47.8 7.3 59 355-413 69-128 (405)
113 3c65_A Uvrabc system protein C 88.1 0.078 2.7E-06 51.3 -0.6 50 254-313 173-222 (226)
114 2hhp_A Poly(A) polymerase; tem 87.8 5.4 0.00018 43.2 13.6 50 368-417 81-131 (530)
115 3i0w_A 8-oxoguanine-DNA-glycos 87.8 1.1 3.8E-05 44.8 7.6 58 254-314 170-230 (290)
116 3n0u_A Probable N-glycosylase/ 87.7 0.27 9.3E-06 47.3 3.0 93 264-364 100-197 (219)
117 3sgi_A DNA ligase; HET: DNA AM 87.4 0.11 3.8E-06 57.2 0.0 87 254-350 491-585 (615)
118 1no5_A Hypothetical protein HI 87.2 2.2 7.6E-05 36.1 8.2 47 346-396 9-56 (114)
119 1jx4_A DNA polymerase IV (fami 86.6 0.22 7.5E-06 51.0 1.7 29 297-325 180-208 (352)
120 3osn_A DNA polymerase IOTA; ho 86.1 0.35 1.2E-05 51.0 3.0 29 297-325 236-264 (420)
121 2jhn_A ALKA, 3-methyladenine D 85.9 1 3.4E-05 45.1 6.1 59 255-317 174-232 (295)
122 3bzc_A TEX; helix-turn-helix, 85.9 0.67 2.3E-05 52.5 5.3 51 252-314 506-557 (785)
123 1im4_A DBH; DNA polymerase PAL 85.6 0.28 9.6E-06 47.1 1.8 29 297-325 186-214 (221)
124 3gqc_A DNA repair protein REV1 85.4 0.39 1.3E-05 51.8 3.0 29 297-325 317-345 (504)
125 3c1y_A DNA integrity scanning 85.2 0.51 1.7E-05 48.8 3.6 53 290-343 310-364 (377)
126 2va8_A SSO2462, SKI2-type heli 85.1 0.4 1.4E-05 53.5 3.0 34 289-323 652-685 (715)
127 1wcn_A Transcription elongatio 84.9 1 3.5E-05 35.3 4.4 52 254-313 7-58 (70)
128 2zj8_A DNA helicase, putative 84.5 0.26 9E-06 55.1 1.2 46 292-338 644-691 (720)
129 2h56_A DNA-3-methyladenine gly 84.5 1.3 4.5E-05 42.7 6.0 61 254-316 96-159 (233)
130 3bq0_A POL IV, DBH, DNA polyme 84.5 0.27 9.1E-06 50.4 1.1 29 297-325 181-209 (354)
131 2bgw_A XPF endonuclease; hydro 83.6 0.52 1.8E-05 44.9 2.7 49 293-342 160-210 (219)
132 1z00_B DNA repair endonuclease 83.5 0.89 3E-05 36.9 3.7 50 254-314 18-68 (84)
133 2aq4_A DNA repair protein REV1 83.5 0.56 1.9E-05 49.5 3.2 29 297-325 243-273 (434)
134 2ikf_A RNA uridylyl transferas 83.4 7.1 0.00024 39.8 11.4 124 354-493 56-202 (353)
135 4fh3_A Poly(A) RNA polymerase 82.8 2.6 8.9E-05 42.7 7.8 59 356-414 42-101 (349)
136 4glx_A DNA ligase; inhibitor, 82.8 0.21 7.3E-06 54.8 -0.5 49 298-346 449-500 (586)
137 4f4y_A POL IV, DNA polymerase 81.3 0.32 1.1E-05 50.1 0.2 29 297-325 181-209 (362)
138 3vdp_A Recombination protein R 80.7 0.83 2.9E-05 43.4 2.8 21 292-312 23-43 (212)
139 3c65_A Uvrabc system protein C 79.8 0.36 1.2E-05 46.6 0.0 47 295-343 173-221 (226)
140 3im1_A Protein SNU246, PRE-mRN 79.2 4 0.00014 41.2 7.6 28 297-324 159-186 (328)
141 1vdd_A Recombination protein R 78.7 1.1 3.6E-05 43.1 2.8 22 291-312 8-29 (228)
142 2nrt_A Uvrabc system protein C 77.4 1.6 5.5E-05 41.9 3.7 31 294-325 167-197 (220)
143 1wot_A Putative minimal nucleo 77.4 4.3 0.00015 33.3 6.0 43 352-395 10-53 (98)
144 1exn_A 5'-exonuclease, 5'-nucl 77.2 1.2 4E-05 44.6 2.8 26 299-325 207-232 (290)
145 2p6r_A Afuhel308 helicase; pro 76.5 1.4 4.9E-05 49.0 3.6 41 285-326 623-663 (702)
146 3pzp_A DNA polymerase kappa; D 76.3 1.4 4.9E-05 47.5 3.4 29 297-325 340-368 (517)
147 1kea_A Possible G-T mismatches 76.0 1.6 5.3E-05 41.8 3.3 23 292-314 112-134 (221)
148 2nrt_A Uvrabc system protein C 75.9 1.5 5E-05 42.1 3.0 49 254-313 168-217 (220)
149 3q8k_A Flap endonuclease 1; he 75.1 1.4 4.9E-05 45.0 2.9 25 299-325 236-261 (341)
150 3huf_A DNA repair and telomere 74.9 2.7 9.3E-05 42.4 4.7 70 19-96 113-186 (325)
151 1kg2_A A/G-specific adenine gl 74.7 1.8 6E-05 41.5 3.3 22 293-314 107-128 (225)
152 3fhf_A Mjogg, N-glycosylase/DN 74.4 2.9 0.0001 39.8 4.7 94 265-365 95-193 (214)
153 3bqs_A Uncharacterized protein 74.0 2.4 8.3E-05 35.0 3.5 56 252-313 2-57 (93)
154 1t94_A Polymerase (DNA directe 73.9 1.8 6.2E-05 45.9 3.4 29 297-325 284-312 (459)
155 3psf_A Transcription elongatio 73.6 2.5 8.5E-05 49.3 4.6 47 254-312 717-765 (1030)
156 2q0z_X Protein Pro2281; SEC63, 73.0 4.9 0.00017 40.7 6.3 28 297-324 163-190 (339)
157 4ecq_A DNA polymerase ETA; tra 72.8 1.2 4.1E-05 47.1 1.6 29 297-325 255-284 (435)
158 2xhi_A N-glycosylase/DNA lyase 71.6 4.2 0.00014 41.8 5.4 54 261-315 215-273 (360)
159 3n5n_X A/G-specific adenine DN 70.9 8.3 0.00028 38.3 7.2 21 294-314 127-148 (287)
160 2abk_A Endonuclease III; DNA-r 70.2 2.5 8.6E-05 39.9 3.1 23 292-314 106-128 (211)
161 3qe9_Y Exonuclease 1; exonucle 69.4 2.6 8.8E-05 43.3 3.2 27 298-324 228-255 (352)
162 3sgi_A DNA ligase; HET: DNA AM 69.4 0.96 3.3E-05 49.8 0.0 65 296-361 459-532 (615)
163 3psi_A Transcription elongatio 68.7 3.6 0.00012 48.8 4.6 48 254-313 714-763 (1219)
164 1pu6_A 3-methyladenine DNA gly 68.1 2.3 7.9E-05 40.5 2.4 25 292-316 118-142 (218)
165 1rxw_A Flap structure-specific 67.4 2.7 9.2E-05 42.7 2.9 26 298-325 238-264 (336)
166 1ci4_A Protein (barrier-TO-aut 67.1 4.5 0.00015 33.1 3.5 29 296-324 19-47 (89)
167 1a76_A Flap endonuclease-1 pro 66.7 3 0.0001 42.1 3.0 25 299-325 229-254 (326)
168 1orn_A Endonuclease III; DNA r 66.3 4 0.00014 39.0 3.7 22 293-314 111-132 (226)
169 2fmp_A DNA polymerase beta; nu 64.9 1.7 5.8E-05 44.3 0.8 50 294-343 56-115 (335)
170 4f92_B U5 small nuclear ribonu 64.9 8.6 0.00029 47.5 7.1 29 297-325 1559-1587(1724)
171 2bcq_A DNA polymerase lambda; 64.1 1.5 5.1E-05 44.7 0.2 50 294-343 56-113 (335)
172 3mab_A Uncharacterized protein 63.2 3.2 0.00011 34.4 2.0 38 252-293 2-39 (93)
173 1z3e_B DNA-directed RNA polyme 63.1 8 0.00027 30.4 4.2 23 254-276 41-63 (73)
174 1kg2_A A/G-specific adenine gl 62.8 9.6 0.00033 36.2 5.6 66 232-304 85-152 (225)
175 3psf_A Transcription elongatio 62.7 5.6 0.00019 46.4 4.6 32 293-324 715-752 (1030)
176 2b4v_A RNA editing complex pro 62.6 11 0.00039 40.0 6.6 59 355-413 45-109 (468)
177 2ihm_A POL MU, DNA polymerase 61.9 2.3 7.9E-05 43.8 1.1 47 297-343 63-119 (360)
178 1kny_A Kntase, kanamycin nucle 61.0 9.2 0.00031 37.0 5.2 51 345-395 6-59 (253)
179 2izo_A FEN1, flap structure-sp 60.7 2.9 0.0001 42.6 1.6 25 299-324 238-262 (346)
180 1ul1_X Flap endonuclease-1; pr 60.5 4.4 0.00015 41.9 3.0 32 293-325 224-261 (379)
181 3bzc_A TEX; helix-turn-helix, 60.3 4.5 0.00015 45.9 3.1 31 294-324 507-542 (785)
182 3r8n_M 30S ribosomal protein S 59.9 5.1 0.00017 34.4 2.7 25 293-317 14-39 (114)
183 1jx4_A DNA polymerase IV (fami 59.5 11 0.00039 38.1 5.8 53 256-318 180-234 (352)
184 1kea_A Possible G-T mismatches 59.4 8.4 0.00029 36.6 4.5 43 232-274 91-135 (221)
185 3vdp_A Recombination protein R 58.5 4.3 0.00015 38.5 2.2 32 254-285 26-57 (212)
186 4e9f_A Methyl-CPG-binding doma 58.3 3.9 0.00013 37.2 1.9 24 252-275 102-125 (161)
187 1pzn_A RAD51, DNA repair and r 57.3 6 0.00021 40.2 3.3 30 296-325 36-65 (349)
188 4ebj_A Aminoglycoside nucleoti 56.9 13 0.00043 36.4 5.2 48 347-395 18-68 (272)
189 1b43_A Protein (FEN-1); nuclea 54.9 5.4 0.00018 40.5 2.4 26 299-325 241-266 (340)
190 3u5c_S 40S ribosomal protein S 54.8 6.7 0.00023 35.1 2.7 25 293-317 28-53 (146)
191 4gfj_A Topoisomerase V; helix- 54.5 9 0.00031 40.0 3.9 56 256-323 470-525 (685)
192 1mpg_A ALKA, 3-methyladenine D 54.5 12 0.00041 36.9 4.8 25 291-315 203-227 (282)
193 3n5n_X A/G-specific adenine DN 54.4 9.4 0.00032 38.0 4.0 66 232-304 104-172 (287)
194 1b22_A DNA repair protein RAD5 54.4 4.9 0.00017 34.4 1.7 63 252-323 24-93 (114)
195 3fsp_A A/G-specific adenine gl 53.9 10 0.00035 38.8 4.4 66 232-304 94-161 (369)
196 2kng_A Protein LSR2; DNA-bindi 53.8 8.5 0.00029 28.6 2.6 22 476-497 15-36 (55)
197 3k4g_A DNA-directed RNA polyme 53.1 15 0.00051 29.8 4.3 23 254-276 44-66 (86)
198 3psi_A Transcription elongatio 52.3 5.2 0.00018 47.5 2.0 32 293-324 712-749 (1219)
199 1orn_A Endonuclease III; DNA r 52.2 15 0.00051 35.0 5.0 43 232-274 89-133 (226)
200 3c1y_A DNA integrity scanning 50.9 5.2 0.00018 41.3 1.5 20 294-313 346-365 (377)
201 3iz6_M 40S ribosomal protein S 50.6 8.2 0.00028 34.8 2.6 26 292-317 25-51 (152)
202 3j20_O 30S ribosomal protein S 50.5 8.4 0.00029 34.5 2.7 25 293-317 21-46 (148)
203 1jms_A Terminal deoxynucleotid 50.5 4.7 0.00016 41.8 1.1 46 297-342 82-137 (381)
204 3gfk_B DNA-directed RNA polyme 49.5 16 0.00055 29.2 3.9 23 254-276 48-70 (79)
205 2abk_A Endonuclease III; DNA-r 49.1 14 0.00047 34.7 4.1 43 232-274 85-129 (211)
206 1gm5_A RECG; helicase, replica 48.9 5.2 0.00018 45.4 1.3 27 297-323 117-143 (780)
207 3mfi_A DNA polymerase ETA; DNA 48.7 5.5 0.00019 43.0 1.4 28 297-324 309-340 (520)
208 3fhg_A Mjogg, N-glycosylase/DN 48.7 7.4 0.00025 36.6 2.1 22 252-273 115-136 (207)
209 2fcl_A Hypothetical protein TM 48.2 31 0.0011 31.3 6.3 54 354-417 22-79 (169)
210 3hj4_A Minor editosome-associa 48.2 23 0.00077 36.7 5.8 37 360-396 37-74 (384)
211 4dez_A POL IV 1, DNA polymeras 48.1 24 0.00081 35.7 6.0 53 256-318 180-234 (356)
212 1vdd_A Recombination protein R 47.5 7.7 0.00026 37.2 2.0 32 254-285 12-43 (228)
213 1r89_A TRNA nucleotidyltransfe 47.5 21 0.00072 37.5 5.6 30 369-398 40-71 (437)
214 2xzm_M RPS18E; ribosome, trans 47.2 9.9 0.00034 34.3 2.6 25 293-317 28-53 (155)
215 1z3e_B DNA-directed RNA polyme 47.0 5.5 0.00019 31.4 0.8 43 301-343 14-58 (73)
216 3ory_A Flap endonuclease 1; hy 46.5 7.8 0.00027 39.8 2.1 24 299-324 255-279 (363)
217 3jz0_A Lincosamide nucleotidyl 45.6 70 0.0024 31.6 8.8 44 350-395 24-69 (287)
218 2vqe_M 30S ribosomal protein S 44.9 6.3 0.00022 34.4 0.9 25 293-317 15-40 (126)
219 3osn_A DNA polymerase IOTA; ho 44.6 23 0.00077 37.0 5.3 53 256-318 236-290 (420)
220 2xhi_A N-glycosylase/DNA lyase 43.7 24 0.00081 36.1 5.2 51 224-274 211-273 (360)
221 1px5_A 2'-5'-oligoadenylate sy 42.8 26 0.0009 35.3 5.4 26 370-395 56-83 (349)
222 3ci0_K Pseudopilin GSPK; gener 42.8 6.3 0.00021 39.3 0.6 75 249-325 153-235 (298)
223 3k4g_A DNA-directed RNA polyme 42.3 7.9 0.00027 31.5 1.0 42 302-343 18-61 (86)
224 3gfk_B DNA-directed RNA polyme 42.1 7.2 0.00025 31.2 0.8 43 301-343 21-65 (79)
225 3i0w_A 8-oxoguanine-DNA-glycos 41.6 27 0.00093 34.5 5.1 46 228-273 176-230 (290)
226 1pu6_A 3-methyladenine DNA gly 41.0 19 0.00065 34.0 3.7 43 232-274 93-141 (218)
227 2i1q_A DNA repair and recombin 41.0 12 0.00042 37.0 2.4 29 297-325 5-33 (322)
228 4b21_A Probable DNA-3-methylad 40.9 21 0.00073 34.1 4.1 42 232-273 118-169 (232)
229 4e9f_A Methyl-CPG-binding doma 40.8 11 0.00038 34.1 2.0 19 294-312 103-121 (161)
230 3gqc_A DNA repair protein REV1 40.6 32 0.0011 36.8 5.8 53 256-318 317-371 (504)
231 2h56_A DNA-3-methyladenine gly 40.5 16 0.00054 35.0 3.1 22 253-274 137-158 (233)
232 2zc2_A DNAD-like replication p 40.5 15 0.00051 28.7 2.4 18 306-323 60-77 (78)
233 1mpg_A ALKA, 3-methyladenine D 39.5 29 0.00099 34.0 4.9 52 226-278 171-230 (282)
234 3bq0_A POL IV, DBH, DNA polyme 39.3 28 0.00096 35.1 4.9 95 256-367 181-279 (354)
235 4gns_A Chitin biosynthesis pro 37.8 14 0.00046 33.9 1.9 74 34-111 179-256 (290)
236 1coo_A RNA polymerase alpha su 37.7 28 0.00096 28.9 3.7 23 254-276 56-78 (98)
237 4f4y_A POL IV, DNA polymerase 37.1 28 0.00095 35.5 4.5 95 256-367 181-279 (362)
238 2csb_A Topoisomerase V, TOP61; 36.5 48 0.0016 32.4 5.7 65 270-336 388-457 (519)
239 2pbe_A AAD6, aminoglycoside 6- 36.3 90 0.0031 30.7 8.0 43 353-397 9-55 (294)
240 2aq4_A DNA repair protein REV1 35.0 33 0.0011 35.8 4.7 56 256-319 243-301 (434)
241 2yg9_A DNA-3-methyladenine gly 33.1 39 0.0013 32.0 4.5 42 232-273 115-165 (225)
242 2i1q_A DNA repair and recombin 32.9 67 0.0023 31.5 6.5 62 254-323 3-71 (322)
243 3fsp_A A/G-specific adenine gl 32.6 19 0.00066 36.7 2.4 22 293-314 116-137 (369)
244 3s6i_A DNA-3-methyladenine gly 32.3 36 0.0012 32.3 4.2 46 228-273 102-158 (228)
245 3pq1_A Poly(A) RNA polymerase; 31.1 53 0.0018 34.8 5.5 40 356-395 160-200 (464)
246 2ziu_A MUS81 protein; helix-ha 30.6 32 0.0011 34.1 3.5 59 254-314 237-303 (311)
247 3pkr_A FLIG, flagellar motor s 29.7 87 0.003 30.8 6.5 87 236-323 87-188 (279)
248 1ci4_A Protein (barrier-TO-aut 28.6 1.3E+02 0.0044 24.4 6.1 57 254-313 18-79 (89)
249 3e1s_A Exodeoxyribonuclease V, 28.3 12 0.00043 40.6 0.1 46 299-344 15-62 (574)
250 1t94_A Polymerase (DNA directe 28.2 66 0.0022 33.7 5.7 52 256-318 284-337 (459)
251 3im1_A Protein SNU246, PRE-mRN 27.9 3.9E+02 0.013 26.2 11.2 52 254-313 157-208 (328)
252 3fhf_A Mjogg, N-glycosylase/DN 27.2 34 0.0012 32.4 2.9 21 253-273 123-144 (214)
253 2z43_A DNA repair and recombin 26.9 13 0.00046 36.9 0.0 47 297-343 14-62 (324)
254 2kz3_A Putative uncharacterize 26.5 93 0.0032 24.8 4.9 52 300-361 9-60 (83)
255 2kp7_A Crossover junction endo 25.6 39 0.0013 27.3 2.6 21 293-313 56-76 (87)
256 3n0u_A Probable N-glycosylase/ 25.4 24 0.00083 33.5 1.5 21 253-273 128-149 (219)
257 3e1s_A Exodeoxyribonuclease V, 24.8 14 0.0005 40.1 -0.2 50 261-318 18-68 (574)
258 2i5u_A DNAD domain protein; st 24.6 33 0.0011 27.1 2.0 18 306-323 65-82 (83)
259 3bbn_M Ribosomal protein S13; 24.2 7.6 0.00026 34.6 -2.1 21 296-316 63-84 (145)
260 2va8_A SSO2462, SKI2-type heli 24.0 3.5E+02 0.012 29.4 10.9 49 254-313 657-705 (715)
261 4ecq_A DNA polymerase ETA; tra 22.0 1.1E+02 0.0037 31.9 5.9 54 256-318 255-310 (435)
262 2zix_A Crossover junction endo 20.7 14 0.00049 36.7 -1.2 59 254-314 233-299 (307)
263 3k7d_A Glutamate-ammonia-ligas 20.0 1.4E+02 0.0047 31.8 6.2 45 368-412 234-289 (498)
No 1
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=100.00 E-value=5.9e-83 Score=667.43 Aligned_cols=321 Identities=29% Similarity=0.538 Sum_probs=291.1
Q ss_pred CCCcHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCccccchhhhcCCCCCCHHHHHHHHHHHHhCCcchhHHHH
Q 009303 207 PDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFE 286 (538)
Q Consensus 207 ~~~N~~ia~~l~~la~~~e~~g~~~r~~aY~rAa~~l~~l~~~i~~~~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~ 286 (538)
+++|++|+++|++||++|++.|+.||++||++||++|+++|++|+++.++.+|||||+++|++|.||++||++.++|+++
T Consensus 14 ~~~N~~i~~~L~~ia~~~e~~g~~~r~~AYr~Aa~~l~~l~~~i~~~~~l~~lpGIG~~~A~kI~E~l~tG~~~~le~L~ 93 (360)
T 2ihm_A 14 THHNTLLSEALETLAEAAGFEANEGRLLSFSRAASVLKSLPCPVASLSQLHGLPYFGEHSTRVIQELLEHGTCEEVKQVR 93 (360)
T ss_dssp SCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCSSCCCSGGGGTTCTTCCHHHHHHHHHHHHHSCCHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCcccCCHHHHhcCCCCCHHHHHHHHHHHHcCChHHHHHHh
Confidence 57899999999999999999996689999999999999999999999999999999999999999999999999999999
Q ss_pred hhchhHHHHHHhhccCCCHHHHHHHHHhCCCCHHHHhhc-cCcchhhhccccchhhhccCcCHHHHHHHHHHHHHHhhhc
Q 009303 287 KDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNE-DSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEV 365 (538)
Q Consensus 287 ~~~~~~~l~lf~~I~GvGpktA~~ly~~GirtledL~~~-~~L~~~q~~Glk~~ed~~~~i~r~Ea~~i~~iv~~~~~~~ 365 (538)
+++.+.+|..|++|||||||||++||++||+||+||+.. ++|+..|++|++||+|+.++|||+||+++.++|.+.++.+
T Consensus 94 ~d~~~~~l~~l~~I~GvG~kta~~l~~~Gi~tledL~~~~~~L~~~~~~Gl~~~~d~~~ripr~ea~~i~~~i~~~l~~~ 173 (360)
T 2ihm_A 94 CSERYQTMKLFTQVFGVGVKTANRWYQEGLRTLDELREQPQRLTQQQKAGLQYYQDLSTPVRRADAEALQQLIEAAVRQT 173 (360)
T ss_dssp HSHHHHHHHHHHTSTTCCHHHHHHHHHTTCCSHHHHHTCCTTCCHHHHHHHHTHHHHHSCEEHHHHHHHHHHHHHHHHTT
T ss_pred cccchHHHHHHhCCCCCCHHHHHHHHHcCCCCHHHHHhcccchHHHHHHHHHHHHHhcCCEEHHHHHHHHHHHHHHHHhc
Confidence 988889999999999999999999999999999999943 4899999999999999999999999999999999998889
Q ss_pred CCCeEEEecccccccCCcCCCeeEEEecCCcchhhhhHHHHHHHHHHcCcccceeee-ccc---------cCCCCCCcce
Q 009303 366 LPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIF-STH---------SEEGTDSGVD 435 (538)
Q Consensus 366 ~p~~~v~~~Gs~RRgke~~~DVDiLit~~~~~~~~~~l~~vv~~L~~~g~l~~~l~~-s~~---------~~~~~~~~~~ 435 (538)
.|++.|++||||||||++||||||||||+++..+.++|.+|++.|.+.|++++.+.. ++. ....+ ..++
T Consensus 174 ~~~~~v~i~GSyRRgket~gDvDilit~~~~~~~~~ll~~v~~~L~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-d~~~ 252 (360)
T 2ihm_A 174 LPGATVTLTGGFRRGKLQGHDVDFLITHPEEGQEVGLLPKVMSCLQSQGLVLYHQYHRSHLADSAHNLRQRSSTM-DVFE 252 (360)
T ss_dssp CTTCEEEECHHHHTTCSEESEEEEEEECSSTTTTTTHHHHHHHHHHHTTCEEEEEEECCC----------------CCCC
T ss_pred CCCcEEEEccccccCCCccCCeEEEEecCChhhhhhHHHHHHHHHHhCCCeeeecchhhhhcccccccccccccc-cccc
Confidence 999999999999999999999999999999998899999999999999999854321 111 00111 2356
Q ss_pred eeeeeeecCC--------------CccceeeeEEEecCchhHHHHHHhhccHHHHHHHHHHHHH-cCCccCCCCCccccc
Q 009303 436 TYFGLCTYPG--------------RELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAES-KGYRLDDTGLFPATY 500 (538)
Q Consensus 436 ~~~g~~~~~~--------------~~~~~RVDl~~~p~~~~~~aLl~~TGS~~fnr~lR~~A~~-kg~~L~~~gL~~~~~ 500 (538)
+++|+|++|+ .+.++||||++||+++||+||+|||||++|||+||++|++ |||+||+||||+..
T Consensus 253 k~~~v~~lp~~~~~~~g~~~~~~~~~~~~rVDl~~vp~~~~g~ALl~fTGS~~fnr~lR~~A~~~kG~~L~e~Gl~~~~- 331 (360)
T 2ihm_A 253 RSFCILGLPQPQQAALAGALPPCPTWKAVRVDLVVTPSSQFPFALLGWTGSQFFERELRRFSRQEKGLWLNSHGLFDPE- 331 (360)
T ss_dssp EEEEEEEEECC-------------CEEEEEEEEEECCTTSHHHHHHHHHSCHHHHHHHHHHHHHHHSCEECSSCEECSS-
T ss_pred ceeeEeecCccccccccccccccccCCceEEEEEEECHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCcCccccccCC-
Confidence 8999999983 1236899999999999999999999999999999999986 99999999999643
Q ss_pred CCCCcccccccCCCCCCCHHHHHhhcCCCCCCCCCcCC
Q 009303 501 GSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERNL 538 (538)
Q Consensus 501 ~~~g~~~~~~~~~~~~~tEedIF~~LGL~yipPe~Rn~ 538 (538)
.+..+++.+|+|||++|||||||||+||.
T Consensus 332 ---------~~~~i~~~~E~~If~~LGl~yipPe~Re~ 360 (360)
T 2ihm_A 332 ---------QKRVFHATSEEDVFRLLGLKYLPPEQRNA 360 (360)
T ss_dssp ---------TTCCCCCSSHHHHHHHTTCCCCCGGGBCC
T ss_pred ---------CCccCCCCCHHHHHHHcCCCCCCccccCC
Confidence 13578999999999999999999999984
No 2
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=100.00 E-value=4.7e-83 Score=662.25 Aligned_cols=328 Identities=37% Similarity=0.677 Sum_probs=293.5
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCccccchhhhcCCCCCCHHHHHHHHHHHHhCCcch
Q 009303 202 LLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSK 281 (538)
Q Consensus 202 ~~~~~~~~N~~ia~~l~~la~~~e~~g~~~r~~aY~rAa~~l~~l~~~i~~~~~l~~lpgIG~~ia~kI~Eil~tG~~~~ 281 (538)
++.+++|+|++|+++|++||++|++.|++||++||++||++|+++|++|++++++.+|||||+++|++|.||++||++.+
T Consensus 5 ~~~~~~~~N~~i~~~L~~ia~~~e~~g~~~r~~AYr~Aa~~l~~l~~~i~~~~~l~~lpGIG~~~A~kI~E~l~tG~~~~ 84 (335)
T 2bcq_A 5 SSQKATNHNLHITEKLEVLAKAYSVQGDKWRALGYAKAINALKSFHKPVTSYQEACSIPGIGKRMAEKIIEILESGHLRK 84 (335)
T ss_dssp -------CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSCCSCCCCHHHHHTSTTCCHHHHHHHHHHHHSSSCGG
T ss_pred CCCCCCCChHHHHHHHHHHHHHHHHcCccHhHHHHHHHHHHHHhCCccccCHHHHhcCCCccHHHHHHHHHHHHcCCchH
Confidence 33466899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhchhHHHHHHhhccCCCHHHHHHHHHhCCCCHHHHhhccCcchhhhccccchhhhccCcCHHHHHHHHHHHHHH
Q 009303 282 LEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKA 361 (538)
Q Consensus 282 le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~~GirtledL~~~~~L~~~q~~Glk~~ed~~~~i~r~Ea~~i~~iv~~~ 361 (538)
+|+++.+ ++++++|++|||||||||++||++||+||+||+++.+++..|++|++||+|+.++|||+||+++.+.|.+.
T Consensus 85 le~l~~~--~p~l~ll~~v~GiG~k~a~~l~~~Gi~tledL~~a~~~k~~q~Igl~~~~~~~~ripr~ea~~ia~~i~~~ 162 (335)
T 2bcq_A 85 LDHISES--VPVLELFSNIWGAGTKTAQMWYQQGFRSLEDIRSQASLTTQQAIGLKHYSDFLERMPREEATEIEQTVQKA 162 (335)
T ss_dssp GGGCCTT--HHHHHHHHTSTTCCHHHHHHHHHTTCCSHHHHHHHCCCCHHHHHHHHTTTGGGCCEEHHHHHHHHHHHHHH
T ss_pred HHHHhhh--hHHHHHHhcCCCcCHHHHHHHHHcCCCCHHHHHHHhcccHHHHHHHHHHHHhcCCEEHHHHHHHHHHHHHH
Confidence 9999754 44999999999999999999999999999999998999999999999999999999999999999999998
Q ss_pred hhhcCCCeEEEecccccccCCcCCCeeEEEecCCcchhhhhHHHHHHHHHHcCcccceeeeccccCCCCCCc-ceeeeee
Q 009303 362 GEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSG-VDTYFGL 440 (538)
Q Consensus 362 ~~~~~p~~~v~~~Gs~RRgke~~~DVDiLit~~~~~~~~~~l~~vv~~L~~~g~l~~~l~~s~~~~~~~~~~-~~~~~g~ 440 (538)
+..+.|++.+++||||||||++||||||||||+++.++.++|.+|++.|.+.|++++++..+. ..+ ..++|++
T Consensus 163 l~~~~~~~~v~i~GS~RRgket~gDiDilit~~~~~~~~~ll~~v~~~l~~~~~i~~~l~~~~------~~g~~~k~~~v 236 (335)
T 2bcq_A 163 AQAFNSGLLCVACGSYRRGKATCGDVDVLITHPDGRSHRGIFSRLLDSLRQEGFLTDDLVSQE------ENGQQQKYLGV 236 (335)
T ss_dssp HHTTCTTCEEEECHHHHTTCSEESSEEEEEECTTSSTTTTCHHHHHHHHHHTTCEEEEEECCT------TSTTCCEEEEE
T ss_pred HHhcCCCcEEEEccccccCCCCCCCeEEEEecCCchhhhhHHHHHHHHHHhCCchHHHhhccc------cCCCCceEEEE
Confidence 888899999999999999999999999999999999899999999999999999998875321 112 4578999
Q ss_pred eecCCCc-cceeeeEEEecCchhHHHHHHhhccHHHHHHHHHHHHHcCCccCCCCCcccccCC-CCcccccccCCCCCCC
Q 009303 441 CTYPGRE-LRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGS-GGKQGVRARTSLKFDT 518 (538)
Q Consensus 441 ~~~~~~~-~~~RVDl~~~p~~~~~~aLl~~TGS~~fnr~lR~~A~~kg~~L~~~gL~~~~~~~-~g~~~~~~~~~~~~~t 518 (538)
|++++.. .++||||++||+++||+||+|||||++|||+||++|+++||+||+||||+.+... +|.+ ...+..+++.+
T Consensus 237 ~~l~~~~~~~~rVDl~~vp~~~~g~ALl~fTGS~~fnr~lR~~A~~~G~kL~e~Gl~~~~~r~~~~~~-~~~~~~~~~~~ 315 (335)
T 2bcq_A 237 CRLPGPGRRHRRLDIIVVPYSEFACALLYFTGSAHFNRSMRALAKTKGMSLSEHALSTAVVRNTHGCK-VGPGRVLPTPT 315 (335)
T ss_dssp ECCSSTTCCCEEEEEEECCGGGHHHHHHHHHCCHHHHHHHHHHHHHTTCEECSSCEEESCEECTTSCE-EECCEECCCSS
T ss_pred EEccCCCCCceEEEEEEECHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCcccccccccccccccccc-ccCCCcCCCCC
Confidence 9998542 4689999999999999999999999999999999999999999999999743211 1211 11245799999
Q ss_pred HHHHHhhcCCCCCCCCCcCC
Q 009303 519 EKEVFDFLGFPWLEPHERNL 538 (538)
Q Consensus 519 EedIF~~LGL~yipPe~Rn~ 538 (538)
|+|||++|||||||||+||+
T Consensus 316 E~~If~~LGl~yipPe~Rn~ 335 (335)
T 2bcq_A 316 EKDVFRLLGLPYREPAERDW 335 (335)
T ss_dssp HHHHHHHTTCCCCCGGGGCC
T ss_pred HHHHHHHcCCCCcCccccCc
Confidence 99999999999999999996
No 3
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=100.00 E-value=1.7e-82 Score=667.64 Aligned_cols=321 Identities=28% Similarity=0.484 Sum_probs=291.4
Q ss_pred CCCcHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCccccchhhhcCCCCCCHHHHHHHHHHHHhCCcchhHHHH
Q 009303 207 PDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFE 286 (538)
Q Consensus 207 ~~~N~~ia~~l~~la~~~e~~g~~~r~~aY~rAa~~l~~l~~~i~~~~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~ 286 (538)
+++|++|+++|++||++|++.|+.||++||++||++|+++|++|+++.++.+|||||+++|++|.||++||++++||+++
T Consensus 33 ~~~N~~i~~~L~~ia~~~e~~g~~~rv~AYr~Aa~~l~~l~~~i~~~~~l~~lpGIG~~ia~kI~E~l~tG~~~~le~l~ 112 (381)
T 1jms_A 33 NNYNQLFTDALDILAENDELRENEGSCLAFMRASSVLKSLPFPITSMKDTEGIPCLGDKVKSIIEGIIEDGESSEAKAVL 112 (381)
T ss_dssp CCTTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTCSSCCCSGGGGTTCSSCCHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHhCCccccCHHHHhcCCCCcHHHHHHHHHHHHcCCcHHHHHHh
Confidence 68899999999999999999996689999999999999999999999999999999999999999999999999999999
Q ss_pred hhchhHHHHHHhhccCCCHHHHHHHHHhCCCCHHHHhh-c-cCcchhhhccccchhhhccCcCHHHHHHHHHHHHHHhhh
Q 009303 287 KDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKN-E-DSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEE 364 (538)
Q Consensus 287 ~~~~~~~l~lf~~I~GvGpktA~~ly~~GirtledL~~-~-~~L~~~q~~Glk~~ed~~~~i~r~Ea~~i~~iv~~~~~~ 364 (538)
+++.+..|..|++|||||||||++||++||+||+||++ . .+++..|++|++||+|+.++|||+||+++.++|.+.++.
T Consensus 113 ~d~~~~~l~~l~~I~GvGpk~a~~ly~~Gi~tledL~~~~g~kl~~~q~~Gl~~~~d~~~ripr~ea~~ia~~i~~~l~~ 192 (381)
T 1jms_A 113 NDERYKSFKLFTSVFGVGLKTAEKWFRMGFRTLSKIQSDKSLRFTQMQKAGFLYYEDLVSCVNRPEAEAVSMLVKEAVVT 192 (381)
T ss_dssp HCHHHHHHHHHHTSTTCCHHHHHHHHHTTCCSHHHHHHCSSCCCCHHHHHHHHTHHHHHSCBCHHHHHHHHHHHHHHHHH
T ss_pred cCcchhHHHHHHccCCCCHHHHHHHHHcCCCcHHHHHhCcccchHHHHHHHHHHHHHhcCCEEHHHHHHHHHHHHHHHHh
Confidence 98888999999999999999999999999999999995 2 379999999999999999999999999999999998888
Q ss_pred cCCCeEEEecccccccCCcCCCeeEEEecCCcchhhh--hHHHHHHHHHHcCcccceee-ecc--------ccCCCCCCc
Q 009303 365 VLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKG--FLSKYVKKLKEMKFLREDLI-FST--------HSEEGTDSG 433 (538)
Q Consensus 365 ~~p~~~v~~~Gs~RRgke~~~DVDiLit~~~~~~~~~--~l~~vv~~L~~~g~l~~~l~-~s~--------~~~~~~~~~ 433 (538)
+.|++.|++||||||||++||||||||||+++..+.+ +|.+|++.|.+.|++++.+. .+. +....+ .+
T Consensus 193 ~~~~~~v~i~GSyRRgket~gDvDilit~~~~~~~~~~~ll~~vv~~L~~~~~i~~~~~~~~~~~~~~lp~~~~~~~-~~ 271 (381)
T 1jms_A 193 FLPDALVTMTGGFRRGKMTGHDVDFLITSPEATEDEEQQLLHKVTDFWKQQGLLLYCDILESTFEKFKQPSRKVDAL-DH 271 (381)
T ss_dssp HCTTCEEEECHHHHTTCSCBSSEEEEEECTTCCHHHHHHHHHHHHHHHHHTTCEEEEEEECCCCCTTCCCCSSCCSC-CC
T ss_pred cCCCcEEEEccccccCCCCcCCeEEEEeCCCccccchhhHHHHHHHHHHhCCCcccccccccccccccccccccccc-cc
Confidence 9999999999999999999999999999999987777 99999999999999975432 211 111112 24
Q ss_pred ceeeeeeeecCCC--------------ccceeeeEEEecCchhHHHHHHhhccHHHHHHHHHHHHH-cCCccCCCCCccc
Q 009303 434 VDTYFGLCTYPGR--------------ELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAES-KGYRLDDTGLFPA 498 (538)
Q Consensus 434 ~~~~~g~~~~~~~--------------~~~~RVDl~~~p~~~~~~aLl~~TGS~~fnr~lR~~A~~-kg~~L~~~gL~~~ 498 (538)
++++||+|++|.. +.++||||++||+++||+||+|||||++|||+||++|++ |||+||+||||+.
T Consensus 272 ~~k~~~i~~lp~~~~~~g~~~~~~~~~~~~~rVDl~~vp~~~~g~ALlyfTGS~~fnr~lR~~A~~~kG~kLne~GL~~~ 351 (381)
T 1jms_A 272 FQKCFLILKLDHGRVHSEKSGQQEGKGWKAIRVDLVMCPYDRRAFALLGWTGSRQFERDLRRYATHERKMMLDNHALYDR 351 (381)
T ss_dssp CEEEEEEEEEEGGGCCSSCC---CCSSEEEEEEEEEECCGGGHHHHHHHHHCCHHHHHHHHHHHHHHHCEEECSSCEEET
T ss_pred ccceeeEeecCccccccccccccccCCCCceEEEEEEECHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCcchhhcccC
Confidence 6789999988642 236899999999999999999999999999999999986 9999999999974
Q ss_pred ccCCCCcccccccCCCCCCCHHHHHhhcCCCCCCCCCcCC
Q 009303 499 TYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERNL 538 (538)
Q Consensus 499 ~~~~~g~~~~~~~~~~~~~tEedIF~~LGL~yipPe~Rn~ 538 (538)
. .+..+++.+|+|||++|||||||||+||.
T Consensus 352 ~----------~g~~i~~~sE~~If~~LGL~yipPe~Re~ 381 (381)
T 1jms_A 352 T----------KRVFLEAESEEEIFAHLGLDYIEPWERNA 381 (381)
T ss_dssp T----------TTEECCCSSHHHHHHHHTCCCCCGGGBCC
T ss_pred C----------CCccCCCCCHHHHHHHcCCCCCChhhcCC
Confidence 2 13578999999999999999999999984
No 4
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=100.00 E-value=1.1e-79 Score=637.25 Aligned_cols=315 Identities=36% Similarity=0.684 Sum_probs=291.5
Q ss_pred CCcHHHHHHHHHHHHHHHHcCCC-hhHHHHHHHHHHHhcCCccccchhhhcCCCCCCHHHHHHHHHHHHhCCcchhHHHH
Q 009303 208 DLNKNITEIFGKLINIYRALGED-RRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFE 286 (538)
Q Consensus 208 ~~N~~ia~~l~~la~~~e~~g~~-~r~~aY~rAa~~l~~l~~~i~~~~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~ 286 (538)
.+|++|+++|++||++|++.|+| ||++||++||++|+++|++|+++.++.+|||||+++|++|.||++||++.+||+++
T Consensus 10 ~~N~~i~~~L~~ia~l~e~~~~~~~rv~AYr~Aa~~l~~l~~~i~~~~~l~~LpGIG~~~A~kI~E~l~tG~~~~le~l~ 89 (335)
T 2fmp_A 10 TLNGGITDMLTELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIAEKIDEFLATGKLRKLEKIR 89 (335)
T ss_dssp CTTHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHCSSCCCCHHHHHTSTTCCHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhCCccccCHHHHhcCCCCcHHHHHHHHHHHHhCCcHHHHHHH
Confidence 36999999999999999999888 79999999999999999999999999999999999999999999999999999999
Q ss_pred hhchhHHHHHHhhccCCCHHHHHHHHHhCCCCHHHHhh-ccCcchhhhccccchhhhccCcCHHHHHHHHHHHHHHhhhc
Q 009303 287 KDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKN-EDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEV 365 (538)
Q Consensus 287 ~~~~~~~l~lf~~I~GvGpktA~~ly~~GirtledL~~-~~~L~~~q~~Glk~~ed~~~~i~r~Ea~~i~~iv~~~~~~~ 365 (538)
+++.+..+..|++|||||||||++||++||+||+||++ .++|+..|++|++||+|+.++|||+||+++.+.|.+.+..+
T Consensus 90 ~~~~~~~l~~l~~V~GiGpk~a~~l~~~Gi~tledL~~a~~~l~~~~~~gl~~~~~~~~ripr~ea~~ia~~i~~~l~~~ 169 (335)
T 2fmp_A 90 QDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNEDKLNHHQRIGLKYFGDFEKRIPREEMLQMQDIVLNEVKKV 169 (335)
T ss_dssp HCHHHHHHHHHTTSTTCCHHHHHHHHHTTCCSHHHHHTCGGGSCHHHHHHHHTHHHHTSCEEHHHHHHHHHHHHHHHHHH
T ss_pred cccchhHHHHHhCCCCCCHHHHHHHHHcCCCCHHHHHHhhhhhHHHHHHHHHHHHHhcCcEEHHHHHHHHHHHHHHHHhc
Confidence 99888999999999999999999999999999999997 67899999999999999999999999999999999988888
Q ss_pred CCCeEEEecccccccCCcCCCeeEEEecCCcchhh----hhHHHHHHHHHHcCcccceeeeccccCCCCCCcceeeeeee
Q 009303 366 LPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHK----GFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLC 441 (538)
Q Consensus 366 ~p~~~v~~~Gs~RRgke~~~DVDiLit~~~~~~~~----~~l~~vv~~L~~~g~l~~~l~~s~~~~~~~~~~~~~~~g~~ 441 (538)
.|++.+++||||||||++||||||||||++..++. +++.+|++.|.+.|++++++..+ ..+++|+|
T Consensus 170 ~~~~~v~i~GS~RRgket~gDiDilit~~~~~~~~~~~~~l~~~v~~~l~~~~~v~~~l~~g----------~~k~~~v~ 239 (335)
T 2fmp_A 170 DSEYIATVCGSFRRGAESSGDMDVLLTHPSFTSESTKQPKLLHQVVEQLQKVHFITDTLSKG----------ETKFMGVC 239 (335)
T ss_dssp CTTCEEEECHHHHTTCSEESSEEEEEECTTBCSSCBCSSCHHHHHHHHHHHTTSEEEEEEEC----------SSEEEEEE
T ss_pred CCCcEEEeccccccccCccCCeEEEEECCCccccccchhhhHHHHHHHHHhCCcceeeeecC----------CceEEEEE
Confidence 99999999999999999999999999999877665 78999999999999999887532 13789999
Q ss_pred ecCCCc-----cceeeeEEEecCchhHHHHHHhhccHHHHHHHHHHHHHcCCccCCCCCcccccCCCCcccccccCCCCC
Q 009303 442 TYPGRE-----LRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKF 516 (538)
Q Consensus 442 ~~~~~~-----~~~RVDl~~~p~~~~~~aLl~~TGS~~fnr~lR~~A~~kg~~L~~~gL~~~~~~~~g~~~~~~~~~~~~ 516 (538)
++++.. .++||||++||+++||+||+|||||++|||+||++|+++||+||+||||+... +|. .+..+++
T Consensus 240 ~l~~~~~~~~~~~~rVDl~~vp~~~~~~aLl~fTGS~~fnr~lR~~A~~kG~kl~e~Gl~~~~~--~~~----~g~~~~~ 313 (335)
T 2fmp_A 240 QLPSKNDEKEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPLGV--TGV----AGEPLPV 313 (335)
T ss_dssp CCCCCTTCCCCCCEEEEEEECCGGGHHHHHHHHHCCHHHHHHHHHHHHHTTEEECSSCEEECCT--TCC----CCCCCCC
T ss_pred EeCCcccccCCCceEEEEEEECHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCcccccccccccc--ccc----CCCccCC
Confidence 998632 36899999999999999999999999999999999999999999999997532 222 2358999
Q ss_pred CCHHHHHhhcCCCCCCCCCcCC
Q 009303 517 DTEKEVFDFLGFPWLEPHERNL 538 (538)
Q Consensus 517 ~tEedIF~~LGL~yipPe~Rn~ 538 (538)
.+|+|||++|||||||||+||+
T Consensus 314 ~~E~~If~~LGl~yipPe~Re~ 335 (335)
T 2fmp_A 314 DSEKDIFDYIQWKYREPKDRSE 335 (335)
T ss_dssp CSHHHHHHHTTCCCCCGGGCCC
T ss_pred CCHHHHHHHcCCCCCCccccCC
Confidence 9999999999999999999985
No 5
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=100.00 E-value=5.6e-62 Score=539.33 Aligned_cols=295 Identities=29% Similarity=0.414 Sum_probs=262.0
Q ss_pred CCcHHHHHHHHHHHHHHHHcCCC-hhHHHHHHHHHHHhcCCccccchhh-----hcCCCCCCHHHHHHHHHHHHhCCcch
Q 009303 208 DLNKNITEIFGKLINIYRALGED-RRSFSYYKAIPVIEKLPFKIESADQ-----VKGLPGIGKSMQDHIQEIVTTGKLSK 281 (538)
Q Consensus 208 ~~N~~ia~~l~~la~~~e~~g~~-~r~~aY~rAa~~l~~l~~~i~~~~~-----l~~lpgIG~~ia~kI~Eil~tG~~~~ 281 (538)
|+|++|+++|++||++|+++|+| ||++||+|||++|+++|++|+++.+ +.+|||||++++.+|.|+++||.+..
T Consensus 1 ~~N~~i~~~l~~~a~~~e~~g~~~~r~~aYr~Aa~~l~~~~~~i~~~~~~~~~~~~~lp~iG~~~~~~i~~~v~~g~~~l 80 (575)
T 3b0x_A 1 MRNQELARIFEEIGLMSEFLGDNPFRVRAYHQAARTLYDLDTPIEEIAEKGKEALMELPGVGPDLAEKILEFLRTGKVRK 80 (575)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHCCSCHHHHHTTCHHHHHTSTTCCHHHHHHHHHHHHHSSCHH
T ss_pred CChHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhCCcchhhHhhcchhHHHhCCCCCHHHHHHHHHHHHcCcHHH
Confidence 57999999999999999999999 8999999999999999999999976 99999999999999999999999999
Q ss_pred hHHHHhhchhHHHHHHhhccCCCHHHHHHHHHh-CCCCHHHHhhc---cCcchhhhc----------cccchhhhccCcC
Q 009303 282 LEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDLKNE---DSLTHSQRL----------GLKYFDDIKTRIP 347 (538)
Q Consensus 282 le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~~-GirtledL~~~---~~L~~~q~~----------Glk~~ed~~~~i~ 347 (538)
++.+..+++. .+.+|++|+|||||+|.+||.. |++|++||+++ +.|+++++| ||++|+++.+|||
T Consensus 81 ~~~~~~~~~~-~~~~l~~v~GvGpk~A~~~~~~lg~~~~~~l~~a~~~~~l~~~~GiG~k~a~~i~~~l~~~~~~~~r~~ 159 (575)
T 3b0x_A 81 HEELSRKVPR-GVLEVMEVPGVGPKTARLLYEGLGIDSLEKLKAALDRGDLTRLKGFGPKRAERIREGLALAQAAGKRRP 159 (575)
T ss_dssp HHHHHHHSCH-HHHHHHTSTTTCHHHHHHHHHTSCCCSHHHHHHHHHHTGGGGSTTCCHHHHHHHHHHHHHHHHHTCCEE
T ss_pred HhhhhhhhHH-HHHHHhcCCCcCHHHHHHHHHhcCCCCHHHHHHHHHcCCcccCCCCCccHHHHHHHHHHHHHHhcccee
Confidence 9999987754 6777779999999999999997 99999999853 457766665 6999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcCCCeEEEecccccccCCcCCCeeEEEecCCcchhhhhHHHHHHHHHHcCcccceeeeccccC
Q 009303 348 RHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSE 427 (538)
Q Consensus 348 r~Ea~~i~~iv~~~~~~~~p~~~v~~~Gs~RRgke~~~DVDiLit~~~~~~~~~~l~~vv~~L~~~g~l~~~l~~s~~~~ 427 (538)
|+||+++.+.|.+.+..+.|.+.+++||||||||++||||||||||+++.. +++.|.+.+++++.+...
T Consensus 160 ~~e~~~~~~~i~~~l~~~~~~~~~~~~Gs~RRgke~~gDiD~li~~~~~~~-------v~~~l~~~~~~~~~~~~g---- 228 (575)
T 3b0x_A 160 LGAVLSLARSLLEAIRALPGVERAELCGSARRYKDTVGDLDFLVASREGER-------AVEGFVRLPQVKEVYAKG---- 228 (575)
T ss_dssp HHHHHHHHHHHHHHHHTSTTCCEEEECHHHHTTCSEESSEEEEEECSSHHH-------HHHHHHTSTTEEEEEEEC----
T ss_pred HHHHHHHHHHHHHHHHhCCCCcEEEEccccccCCCccCCeEEEEeCCCHHH-------HHHHHHhCcchhhHhhcC----
Confidence 999999999888888877777899999999999999999999999998763 678888889888665321
Q ss_pred CCCCCcceeeeeeeecCCCccceeeeEEEecCchhHHHHHHhhccHHHHHHHHHHHHHcCCccCCCCCcccccCCCCccc
Q 009303 428 EGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQG 507 (538)
Q Consensus 428 ~~~~~~~~~~~g~~~~~~~~~~~RVDl~~~p~~~~~~aLl~~TGS~~fnr~lR~~A~~kg~~L~~~gL~~~~~~~~g~~~ 507 (538)
+ .++.+ +++ .++||||++||+++||+||+|||||++|||+||++|++|||+||+||||+.
T Consensus 229 ---~---~k~~~--~~~---~~~rvDl~~~~~~~~~~al~~~TGs~~~n~~lR~~A~~~g~~l~~~gl~~~--------- 288 (575)
T 3b0x_A 229 ---K---ERATV--FLK---NGLQVDLRVVPPESYGAGLQYLTGSAAHSIRLRALAQEKGLKLSEYGVFRG--------- 288 (575)
T ss_dssp ---S---SEEEE--EET---TSCEEEEEEECGGGHHHHHHHHHCCHHHHHHHHHHHHHTTCEEETTEEEET---------
T ss_pred ---C---CceEE--Ecc---CCcEEEEEEECHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCcchhhccCC---------
Confidence 1 12222 233 247999999999999999999999999999999999999999999999952
Q ss_pred ccccCCCCCCCHHHHHhhcCCCCCCCCCcC
Q 009303 508 VRARTSLKFDTEKEVFDFLGFPWLEPHERN 537 (538)
Q Consensus 508 ~~~~~~~~~~tEedIF~~LGL~yipPe~Rn 537 (538)
...++++||++||+.+||+|+||++|+
T Consensus 289 ---~~~~~~~~E~~if~~lgl~~i~p~~R~ 315 (575)
T 3b0x_A 289 ---EKRIAGETEEEVYAALGLPWIPPPLRE 315 (575)
T ss_dssp ---TEEEECSSHHHHHHHTTCCCCCGGGCS
T ss_pred ---CcccCCCCHHHHHHHcCCCCCCHHHcC
Confidence 116889999999999999999999997
No 6
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=100.00 E-value=2.6e-59 Score=517.95 Aligned_cols=282 Identities=18% Similarity=0.280 Sum_probs=238.0
Q ss_pred CCCcHHHHHHHHHHHHHHHHcCCC-hhHHHHHHHHHHHhcCCccccchhh--hcCCCCCCHHHHHHHHHHHHhCCcchhH
Q 009303 207 PDLNKNITEIFGKLINIYRALGED-RRSFSYYKAIPVIEKLPFKIESADQ--VKGLPGIGKSMQDHIQEIVTTGKLSKLE 283 (538)
Q Consensus 207 ~~~N~~ia~~l~~la~~~e~~g~~-~r~~aY~rAa~~l~~l~~~i~~~~~--l~~lpgIG~~ia~kI~Eil~tG~~~~le 283 (538)
.++|++|+++|++||++|++.|+| ||++||++|+++|+.+|.+|+++.+ +..|||||++++.+|.|++++|.+..++
T Consensus 7 ~~~N~~i~~~l~~~a~~~e~~g~~~~r~~ay~~Aa~~i~~l~~~i~~~~~~~~~~lp~iG~~~~~~i~~~v~~g~~~~~~ 86 (578)
T 2w9m_A 7 APSRHRLVHALERTADLLDILGGEDFKSRAYRSAARSLEELNEETPELLAREFTGIPKVGKGIAAELSDFARSGTFAPLE 86 (578)
T ss_dssp -CCHHHHHHHHHHHHHHHHHC---CCSHHHHHHHHHHHHSCC----------CCSSTTCCHHHHHHHHHHHHHSSCHHHH
T ss_pred CCChHHHHHHHHHHHHHHHhhCCCcccHHHHHHHHHHHHhCchhhhhhhHhhhhhcCCCChhHHHHHHHHHcCChHHHHH
Confidence 457999999999999999999988 7999999999999999999999977 9999999999999999999999999999
Q ss_pred HHHhhchhHHHHHHhhccCCCHHHHHHHHHhCCCCHHHHhhc---cCcch--------hhhc--cccchhhhccCcCHHH
Q 009303 284 HFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNE---DSLTH--------SQRL--GLKYFDDIKTRIPRHE 350 (538)
Q Consensus 284 ~l~~~~~~~~l~lf~~I~GvGpktA~~ly~~GirtledL~~~---~~L~~--------~q~~--Glk~~ed~~~~i~r~E 350 (538)
.+..+++. .+..|++|+|||||+|++||+.||+|++||+++ ++|+. +|++ |+++|+++.+||||+|
T Consensus 87 ~~~~~~~~-~~~~L~~v~GVGpk~A~~i~~~G~~s~edL~~a~~~~~L~~~~GiG~Ktaq~I~~~l~~~~~~~~r~~~~e 165 (578)
T 2w9m_A 87 AAAGQLPP-GLLDLLGVRGLGPKKIRSLWLAGIDSLERLREAAESGELAGLKGFGAKSAATILENVVFLFEARQRQSLRA 165 (578)
T ss_dssp HHHHHSCH-HHHHHTTSTTCCHHHHHHHHHTTCCSHHHHHHHHHHTTTTTSTTCCHHHHHHHHHHHHHHHHHCSSEEHHH
T ss_pred HHhhhhHH-HHHHHhCCCCcCHHHHHHHHHcCCCCHHHHHHHHhhCccccCCCCCHHHHHHHHHHHHHHHhhcCCeeHHH
Confidence 99988865 667777999999999999999999999999964 57887 5666 7999999999999999
Q ss_pred HHHHHHHHHHHhhhcCCCeEEEecccccccCCcCCCeeEEEecCCcchhhhhHHHHHHHHHHcCcccceeeeccccCCCC
Q 009303 351 VEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGT 430 (538)
Q Consensus 351 a~~i~~iv~~~~~~~~p~~~v~~~Gs~RRgke~~~DVDiLit~~~~~~~~~~l~~vv~~L~~~g~l~~~l~~s~~~~~~~ 430 (538)
|+++.+.|.+.++.+. |++||||||||++|||||||||| ++.. | |.+.++++ . .+
T Consensus 166 ~~~~~~~i~~~l~~~~----~~~~Gs~RR~~e~~gDiD~li~~-~~~~-------v---l~~~~~v~---~------~g- 220 (578)
T 2w9m_A 166 GLAVAEELAGALTDLS----PAPAGDVRRGLETVRAAELTVTG-TPDD-------V---LARLPELT---V------QG- 220 (578)
T ss_dssp HHHHHHHHHHHTGGGC----CEECHHHHHTCSEESSEEEEEES-CHHH-------H---HHHCTTCE---E------C--
T ss_pred HHHHHHHHHHHHHhCC----CEEecccccCCCccCCEEEEEec-ChHH-------H---HhcCccce---e------cC-
Confidence 9999888888776543 88999999999999999999999 7653 1 66677765 0 01
Q ss_pred CCcceeeeeeeecCCCccceeeeEEEecCchhHHHHHHhhccHHHH-HHHHHHHHHcCCccCCCCCcccccCCCCccccc
Q 009303 431 DSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLN-RRLRLLAESKGYRLDDTGLFPATYGSGGKQGVR 509 (538)
Q Consensus 431 ~~~~~~~~g~~~~~~~~~~~RVDl~~~p~~~~~~aLl~~TGS~~fn-r~lR~~A~~kg~~L~~~gL~~~~~~~~g~~~~~ 509 (538)
+ .++++. ++ ++||||++||+++||+||+|||| .|| |+||++|++|||+||+||||+..
T Consensus 221 ~---~k~~~~--~~----~~~vDl~~~~~~~~~~al~~~TG--~~n~~~lr~~A~~~g~~l~~~gl~~~~---------- 279 (578)
T 2w9m_A 221 D---GVLSGD--YE----GVPVEIACAPAEARGALDLLRSG--EHFAGQVQAAAQARGFTLTAGGLSRGD---------- 279 (578)
T ss_dssp -----CEEEE--ET----TEEEEEEEECTTTHHHHHHHTSC--HHHHHHHHHHHHTTTCEEETTEEEETT----------
T ss_pred C---ceEEEE--EC----CEEEEEEEECHHHHHHHHHHHhh--hhHHHHHHHHHHHcCCCcChhhccCCC----------
Confidence 1 234443 23 37999999999999999999999 888 99999999999999999999521
Q ss_pred ccCCCCCCCHHHHHhhcCCCCCCCCCcC
Q 009303 510 ARTSLKFDTEKEVFDFLGFPWLEPHERN 537 (538)
Q Consensus 510 ~~~~~~~~tEedIF~~LGL~yipPe~Rn 537 (538)
..+++.||++||++|||||||||+||
T Consensus 280 --~~~~~~~E~~if~~lgl~~i~Pe~Re 305 (578)
T 2w9m_A 280 --EVLPTPTEAVVFHALDLPFRPAEYRE 305 (578)
T ss_dssp --EEECCCSHHHHHHHTTCCCCCGGGCS
T ss_pred --ccCCCCCHHHHHHHcCCCCCChhhcC
Confidence 16889999999999999999999998
No 7
>1jaj_A DNA polymerase beta-like protein; CIS peptide, viral protein; HET: DNA; NMR {African swine fever virus} SCOP: d.218.1.2 PDB: 1jqr_A*
Probab=100.00 E-value=4.4e-42 Score=322.95 Aligned_cols=166 Identities=23% Similarity=0.334 Sum_probs=139.2
Q ss_pred ccccchhhhccCcCHHHHHHHHHHHHHHhhhcCCCeEEEecccccccCCcCCCeeEEEecCCcchhhhhHHHHHHHHHH-
Q 009303 334 LGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKE- 412 (538)
Q Consensus 334 ~Glk~~ed~~~~i~r~Ea~~i~~iv~~~~~~~~p~~~v~~~Gs~RRgke~~~DVDiLit~~~~~~~~~~l~~vv~~L~~- 412 (538)
+|+++++++.+++.++.+.++ | -.||+.+++||||||||++||||||||||+++. .+++.|.+
T Consensus 6 ~~~~~~~~l~~~~~~~~~~~~---i------k~~g~~v~iaGS~RRgket~gDiDiLit~~~~~-------~v~~~L~~~ 69 (174)
T 1jaj_A 6 QGKKIVNHLRSRLAFEYNGQL---I------KILSKNIVAVGSLRREEKMLNDVDLLIIVPEKK-------LLKHVLPNI 69 (174)
T ss_dssp HHHHHHHHHHHSEEEEETTEE---E------EECTTTEEEEEHHHHTCSEECCEEEEEEESSHH-------HHHTSSSEE
T ss_pred hHHHHHHHHHhhhhHHhhccc---c------cCCCcEEEEeccccCCCCCCCCEEEEEecCCHH-------HHHHHHHhc
Confidence 689999999999998877543 1 158999999999999999999999999999854 47788888
Q ss_pred -cCccc-ceeeeccccCCCCCCcceeeeeeeecCCCccceeeeEEEecCchhHHHHHHhhccHHHHHHHHHHHHHcCCcc
Q 009303 413 -MKFLR-EDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRL 490 (538)
Q Consensus 413 -~g~l~-~~l~~s~~~~~~~~~~~~~~~g~~~~~~~~~~~RVDl~~~p~~~~~~aLl~~TGS~~fnr~lR~~A~~kg~~L 490 (538)
.|+++ +.+... + .++++ ++++...++||||++||+++|++||+|||||++||++||++|+++||+|
T Consensus 70 ~~~~v~~~~l~~g-------~---~k~~~--~l~~~~~~~rVDl~~vp~~~fg~ALl~fTGSk~hn~~lR~~A~~kG~~L 137 (174)
T 1jaj_A 70 RIKGLSFSVKVCG-------E---RKCVL--FIEWEKKTYQLDLFTALAEEKPYAIFHFTGPVSYLIRIRAALKKKNYKL 137 (174)
T ss_dssp EESSCEEEEEEET-------T---TEEEE--EEESSSCCEEEEEEEEETTCHHHHHHHHHSCHHHHHHHHHHHHHTTEEE
T ss_pred cCCceeHhHeecC-------C---CeEEE--EeCCCCCceEEEEEEeCHHHHHHHHHHhHCCHHHHHHHHHHHHHcCCCc
Confidence 99988 765321 1 14444 3443224689999999999999999999999999999999999999999
Q ss_pred CCCCCcccccCCCCcccccccCCCCCCCHHHHHhhcCCCCCCCCCcC
Q 009303 491 DDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 537 (538)
Q Consensus 491 ~~~gL~~~~~~~~g~~~~~~~~~~~~~tEedIF~~LGL~yipPe~Rn 537 (538)
|+||||+.. .+..+++++|+|||++|||||||||+|.
T Consensus 138 ~e~Gl~~~~----------~g~~i~~~sE~~If~~LGL~yipPelR~ 174 (174)
T 1jaj_A 138 NQYGLFKNQ----------TLVPLKITTEKELIKELGFTYRIPKKRL 174 (174)
T ss_dssp ETTEEEETT----------EEECCCCSSHHHHHHHHTSCCCCGGGCC
T ss_pred CccccccCC----------CCcccCCCCHHHHHHHcCCCCcCccccC
Confidence 999999632 1357899999999999999999999994
No 8
>2dun_A POL MU, DNA polymerase MU; layers A/B/A, parallel beta-sheet of 4 strands, non- homologous END jonting, somatic hypermutation, V(D)J recombination; HET: DNA; NMR {Homo sapiens} PDB: 2htf_A*
Probab=99.94 E-value=7.2e-27 Score=207.09 Aligned_cols=98 Identities=18% Similarity=0.236 Sum_probs=86.3
Q ss_pred CCCCCCCCcCcEEEEecCCCChhHHHHHHHHHHhcCCEEEeecCCCccEEEEcCCh--HHHHHH--HHhhhc-c-cCccc
Q 009303 12 ALDSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLE--ALLQQV--SKQHLA-R-FKGSV 85 (538)
Q Consensus 12 ~~~~~~~F~g~~iy~~~~~~g~~R~~~l~~~~~~~G~~V~~~ls~~VTHVV~~~~~--~~~~~l--~~~~~~-~-~~~~l 85 (538)
.+.+..+|++++|||++.+||.+|++||+++|+++||+|++.+|++|||||+++++ ++++|| +...++ . ..++|
T Consensus 4 ~~~~~~~F~~v~iyive~kmG~sRr~fL~~la~~kGf~v~~~~S~~VTHVV~E~~s~~~~~~~L~~~~~~l~~~~~~~~l 83 (133)
T 2dun_A 4 GSSGSTRFPGVAIYLVEPRMGRSRRAFLTGLARSKGFRVLDACSSEATHVVMEETSAEEAVSWQERRMAAAPPGCTPPAL 83 (133)
T ss_dssp CCCSSCSEEEEEEEECHHHHCSHHHHHHHHHHHHHTEEECSSCCTTCCEEEESSCCHHHHHHHHHHHHHHSCTTCCCCEE
T ss_pred CCCCccccCccEEEEecCCcCHHHHHHHHHHHHhcCCEeccccCCCceEEEecCCCHHHHHHHHHHhhcccCcCCCCcEE
Confidence 46778999999999999999999999999999999999999999999999998876 488899 666665 2 24899
Q ss_pred cccchHHHHHhcCcccCccccccc
Q 009303 86 IRYQWLEDSLRLGEKVSEDLYRIK 109 (538)
Q Consensus 86 V~~~Wl~ecik~g~lv~e~~y~l~ 109 (538)
|+++||+|||++|+|||++.|.+.
T Consensus 84 LdisWltecm~~g~pV~~e~~~~l 107 (133)
T 2dun_A 84 LDISWLTESLGAGQPVPVECRHRL 107 (133)
T ss_dssp EEHHHHHHHHHHTSCCCCCTTTSC
T ss_pred eccHHHHHHHhcCCcCCcccceEe
Confidence 999999999999999998554443
No 9
>2coe_A Deoxynucleotidyltransferase, terminal variant; BRCT domain, DNA polymerase, teminal deoxynucleotidyltransferase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.91 E-value=2.3e-24 Score=190.03 Aligned_cols=101 Identities=21% Similarity=0.298 Sum_probs=87.7
Q ss_pred CCCCCCCCCCcCcEEEEecCCCChhHHHHHHHHHHhcCCEEEeecCCCccEEEEcCCh--HHHHHHHHhhhccc-Ccccc
Q 009303 10 TPALDSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLE--ALLQQVSKQHLARF-KGSVI 86 (538)
Q Consensus 10 ~~~~~~~~~F~g~~iy~~~~~~g~~R~~~l~~~~~~~G~~V~~~ls~~VTHVV~~~~~--~~~~~l~~~~~~~~-~~~lV 86 (538)
.+++++.++|+||+|||++.+|+.+|++||+++++++||+|++.++++|||||++|.+ ++++|++..++... +++||
T Consensus 12 ~~~~~p~~~F~g~~iy~v~~~~g~~R~~~l~~l~r~~G~~V~~~ls~~VTHVVve~~~~~e~~~~l~~~~l~~~~~~~lv 91 (120)
T 2coe_A 12 MASSPQDIKFQDLVVFILEKKMGTTRRALLMELARRKGFRVENELSDSVTHIVAENNSGSDVLEWLQAQKVQVSSQPELL 91 (120)
T ss_dssp SSSCSSCCSCTTCEEEEECTTTCHHHHHHHHHHHHHHTCEECSSCCTTCCEEEESSCCHHHHHHHHHHCCCCCSSCCEEE
T ss_pred CCCCCcccccCCeEEEEeecccchHHHHHHHHHHHHcCCEEeeccCCCcCEEEecCCCHHHHHHHHhccccccccccEEe
Confidence 4568889999999999999999999999999999999999999999999999998665 36777776655542 48999
Q ss_pred ccchHHHHHhcCcccCccc-ccccc
Q 009303 87 RYQWLEDSLRLGEKVSEDL-YRIKL 110 (538)
Q Consensus 87 ~~~Wl~ecik~g~lv~e~~-y~l~~ 110 (538)
+++||+|||++|++|||++ |+|.+
T Consensus 92 ~i~Wl~esmk~g~lv~ee~~~~l~~ 116 (120)
T 2coe_A 92 DVSWLIECIGAGKPVEMTGKHQLSG 116 (120)
T ss_dssp EHHHHHHHHHTTSCCCCSSSSBCCC
T ss_pred ecHHHHHHHHcCCccCcccceEecc
Confidence 9999999999999999855 55543
No 10
>2jw5_A DNA polymerase lambda; BRCT domain, family X polymerase, nonhomologous END joining (NHEJ), DNA damage, DNA repair, DNA replication, DNA synthesis; HET: DNA; NMR {Homo sapiens}
Probab=99.83 E-value=4.7e-22 Score=172.60 Aligned_cols=98 Identities=18% Similarity=0.351 Sum_probs=85.2
Q ss_pred CCCCCCCcCcEEEEecCCCChhHHHHHHHHHHhcCCEEEeecCCCccEEEEcC-C--hHHHHHHHHhhhcccCccccccc
Q 009303 13 LDSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMD-L--EALLQQVSKQHLARFKGSVIRYQ 89 (538)
Q Consensus 13 ~~~~~~F~g~~iy~~~~~~g~~R~~~l~~~~~~~G~~V~~~ls~~VTHVV~~~-~--~~~~~~l~~~~~~~~~~~lV~~~ 89 (538)
..+.++|+||++||++.+|+..|++++.++++++||+|++.++++|||||+++ . .+++++++.+.++. +++||+++
T Consensus 6 ~~~~~~F~g~~v~~~p~~~~~~r~~i~~~~a~~~Ga~v~~~~~~~vTHVVvd~~~s~~~~l~~l~~~~l~~-~~~iV~~~ 84 (106)
T 2jw5_A 6 EEAEEWLSSLRAHVVRTGIGRARAELFEKQIVQHGGQLCPAQGPGVTHIVVDEGMDYERALRLLRLPQLPP-GAQLVKSA 84 (106)
T ss_dssp CCGGGCGGGSCCCBCTTTCCSSSTTHHHHHHHHTTCCCCSTTCTTCCEEEECSSSCHHHHHHHTTCSSCCS-SCEEEEHH
T ss_pred ccCcCEeCCeEEEEEecCCchHHHHHHHHHHHHcCCEEeeccCCCccEEEEcCCCCHHHHHHHHhhcccCC-CcEEecCc
Confidence 45789999999999999999999999999999999999999999999999974 3 34667776433332 47999999
Q ss_pred hHHHHHhcCcccCccccccccC
Q 009303 90 WLEDSLRLGEKVSEDLYRIKLD 111 (538)
Q Consensus 90 Wl~ecik~g~lv~e~~y~l~~~ 111 (538)
|++|||++|++|||++|.+.++
T Consensus 85 Wv~dci~~~~llde~~y~~~~~ 106 (106)
T 2jw5_A 85 WLSLCLQERRLVDVAGFSIFIP 106 (106)
T ss_dssp HHHHHHHTCSCCCGGGTBCSCC
T ss_pred hHHHHHhcCcccCcccccccCC
Confidence 9999999999999999988753
No 11
>1wf6_A Similar to S.pombe -RAD4+/CUT5+product (A40727); BRCT, topoisomerase II binding protein, checkpoint; NMR {Homo sapiens} SCOP: c.15.1.5
Probab=99.56 E-value=6e-15 Score=132.73 Aligned_cols=93 Identities=25% Similarity=0.415 Sum_probs=74.5
Q ss_pred CCCCCCCcCcEEEEecCCCChhHHHHHHHHHHhcCCEEEeecCCCccEEEEcCChHHHHHHHHhhhcccCccccccchHH
Q 009303 13 LDSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLEALLQQVSKQHLARFKGSVIRYQWLE 92 (538)
Q Consensus 13 ~~~~~~F~g~~iy~~~~~~g~~R~~~l~~~~~~~G~~V~~~ls~~VTHVV~~~~~~~~~~l~~~~~~~~~~~lV~~~Wl~ 92 (538)
..+..+|+||+|||. +....+++.|+++++++||+|++.+++.|||||+.+....++.... .....++||+++||.
T Consensus 35 ~~~~~lF~g~~i~i~--G~~~~~~~~L~~~i~~~Gg~v~~~l~~~vTHvI~~~~~~~~~~~~~--~~~~~~~iV~~~Wv~ 110 (132)
T 1wf6_A 35 QAPEDLLDGCRIYLC--GFSGRKLDKLRRLINSGGGVRFNQLNEDVTHVIVGDYDDELKQFWN--KSAHRPHVVGAKWLL 110 (132)
T ss_dssp CCCTTTTTTCEEEEE--SCCSHHHHHHHHHHHHTTCEEESSCCSSCCEEEESSCCSHHHHHHH--HSCCCCCEEEHHHHH
T ss_pred cccccccCCEEEEEE--CCChHHHHHHHHHHHHCCCEEeCcCCCCCeEEEECCchHHHHHHHH--hhCCCCeEechHHHH
Confidence 445799999999997 4456788999999999999999999999999999764332221111 112247999999999
Q ss_pred HHHhcCcccCccccccc
Q 009303 93 DSLRLGEKVSEDLYRIK 109 (538)
Q Consensus 93 ecik~g~lv~e~~y~l~ 109 (538)
|||++|++|||+.|.+.
T Consensus 111 dsi~~~~ll~e~~Y~~~ 127 (132)
T 1wf6_A 111 ECFSKGYMLSEEPYIHS 127 (132)
T ss_dssp HHHHHSSCCCSGGGBCC
T ss_pred HHHHcCCcCCHhhccCC
Confidence 99999999999999764
No 12
>3pa6_A Microcephalin; BRCT domain, cell cycle; HET: MSE; 1.50A {Homo sapiens} PDB: 3ktf_A* 2wt8_A*
Probab=99.56 E-value=4.8e-15 Score=128.54 Aligned_cols=91 Identities=21% Similarity=0.285 Sum_probs=73.0
Q ss_pred CCCcCcEEEEecCC-CCh-hHHHHHHHHHHhcCCEEEeecCCCccEEEEcCChHHHHHHHHhhhcccCccccccchHHHH
Q 009303 17 GIFAGMRVFLVEKG-VQN-RRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLEALLQQVSKQHLARFKGSVIRYQWLEDS 94 (538)
Q Consensus 17 ~~F~g~~iy~~~~~-~g~-~R~~~l~~~~~~~G~~V~~~ls~~VTHVV~~~~~~~~~~l~~~~~~~~~~~lV~~~Wl~ec 94 (538)
.+|+||+|||.... .|. .|.+.+.++++++||+|++.++.+|||||+.+.... ++ ++. ...+.+||++.||.||
T Consensus 6 p~f~g~vvyvd~~~~~g~~~~s~~l~~~l~~~GA~v~~~l~~~vTHvV~~~~~~~-~~-~~A--~~~~i~iV~~~Wv~~C 81 (107)
T 3pa6_A 6 PILKDVVAYVEVWSSNGTENYSKTFTTQLVDMGAKVSKTFNKQVTHVIFKDGYQS-TW-DKA--QKRGVKLVSVLWVEKC 81 (107)
T ss_dssp CTTTTCEEEEEEBCTTSCCBCHHHHHHHHHHTTCEECSSCCTTCCEEEEESCCHH-HH-HHH--HHHTCEEECHHHHHHH
T ss_pred cccCCEEEEEeccCCCChhhHHHHHHHHHHHcCCEEecccCCCccEEEEeCCCCh-HH-HHH--hcCCCEEECHHHHHHH
Confidence 49999999997664 454 567889999999999999999999999999654321 11 111 1124799999999999
Q ss_pred HhcCcccCccccccccC
Q 009303 95 LRLGEKVSEDLYRIKLD 111 (538)
Q Consensus 95 ik~g~lv~e~~y~l~~~ 111 (538)
+++|++|||++|.+..+
T Consensus 82 ~~~~~~vdE~~Y~i~~~ 98 (107)
T 3pa6_A 82 RTAGAHIDESLFPAANM 98 (107)
T ss_dssp HHHTSCCCGGGSBCCCT
T ss_pred HHhCccCChhcccCCCC
Confidence 99999999999998644
No 13
>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ...
Probab=99.52 E-value=1.4e-16 Score=156.90 Aligned_cols=177 Identities=19% Similarity=0.148 Sum_probs=71.4
Q ss_pred HHHhhccCCCHHHHHHHHHhCCCCHHHHhhc--cCcchhhhccccchhhhccC-------------cC-HHHHHHH-HHH
Q 009303 295 SLFGEVWGIGPATAQKLYEKGHRTLDDLKNE--DSLTHSQRLGLKYFDDIKTR-------------IP-RHEVEQM-ERL 357 (538)
Q Consensus 295 ~lf~~I~GvGpktA~~ly~~GirtledL~~~--~~L~~~q~~Glk~~ed~~~~-------------i~-r~Ea~~i-~~i 357 (538)
..|.+|+||||++|+.|++.||.|+++|..+ ..|..+.+||.+..+.|... ++ ..++..+ +.+
T Consensus 15 ~~L~~IpGIGpk~a~~Ll~~gf~sve~L~~a~~~eL~~v~GIG~ktAe~I~~~l~~~~~~~~r~~~~~~~~~a~~~a~~i 94 (241)
T 1vq8_Y 15 TELTDISGVGPSKAESLREAGFESVEDVRGADQSALADVSGIGNALAARIKADVGGLEVESETEAEVEEEGGEEAPDEDV 94 (241)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHhcCCCCCHHHHHHHHHcCCCCHHHHHhCCHHHHHhccCCCHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHH
Confidence 3456999999999999999999999999744 36888999997777776543 44 4444443 233
Q ss_pred HHHHhhhcCCC-e-EEEecccccccC---------CcCC-CeeEEE----ecCCcchhhhhHHHHHHHHHHcCcccceee
Q 009303 358 LQKAGEEVLPE-V-IILCGGSYRRGK---------ASCG-DLDVVI----MHPDRKSHKGFLSKYVKKLKEMKFLREDLI 421 (538)
Q Consensus 358 v~~~~~~~~p~-~-~v~~~Gs~RRgk---------e~~~-DVDiLi----t~~~~~~~~~~l~~vv~~L~~~g~l~~~l~ 421 (538)
+..+. -.|+ + .++++||+||.+ ++++ |+|+++ +...+.- +-.++...++.++.+....-
T Consensus 95 ~~~l~--~~~~~~~~~~~ags~RR~~~~~~~~~~~efvr~d~d~~~~~~~~wrkP~g---~d~~vr~~f~g~~~~~~ig~ 169 (241)
T 1vq8_Y 95 ETELQ--ARGLTEKTPDLSDEDARLLTQRHRVGKPQFNRQDHHKKKRVSTSWRKPRG---QLSKQRRGIKGKGDTVEAGF 169 (241)
T ss_dssp -CCEE--ECSCTTCCCCCCHHHHHHHHHHHHHCCCCCCCTTGGGCTTSCSSCCCCCC---TTCTTTTTCTTSCCCCCGGG
T ss_pred HHHHH--hCCCCcCceecChHHHHHHHHhcccCCCCeeccchhheeecccCcCCCCC---ccHHHHHHHhCCCCCCcccc
Confidence 32222 2455 4 789999999999 9999 999999 5444431 11112222222222211110
Q ss_pred eccccCCCCCCcceeeeeeeecCCCccceee-------eEEEecCchhHHHHHHhhccHHHHHHHHHHHHHcCCccCC
Q 009303 422 FSTHSEEGTDSGVDTYFGLCTYPGRELRHRI-------DFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDD 492 (538)
Q Consensus 422 ~s~~~~~~~~~~~~~~~g~~~~~~~~~~~RV-------Dl~~~p~~~~~~aLl~~TGS~~fnr~lR~~A~~kg~~L~~ 492 (538)
.+ .... .+. +|. ..++ ||.+++++.|+++|.|||||+.|| .|+..|.++|+++.+
T Consensus 170 ---~s--~~k~-----r~~--lp~---G~~~~~v~n~~dL~~l~~~~~~a~i~~~tGskkh~-~i~~~A~~~gikv~n 231 (241)
T 1vq8_Y 170 ---RS--PTAV-----RGK--HPS---GFEEVRVHNVDDLEGVDGDTEAVRIASKVGARKRE-RIEEEAEDAGIRVLN 231 (241)
T ss_dssp ---CC--CTTT-----TTC--CTT---SCEEEEESSGGGGTTCCTTTEEEEECTTSCHHHHH-HHHHHHHHTTCCBSS
T ss_pred ---CC--CCce-----EEE--CCC---CCEeeeccCHhHhhccCcHHHHHHHHHHhccHhHH-HHHHHHHHcCCcccC
Confidence 00 0000 011 121 2366 999999999999999999999999 999999999999755
No 14
>3ii6_X DNA ligase 4; XRCC4, NHEJ, DNA repair, BRCT, alternative splicing, coiled coil, DNA damage, DNA recombination, isopeptide bond, nucleus; HET: DNA; 2.40A {Homo sapiens} PDB: 2e2w_A*
Probab=99.50 E-value=3e-14 Score=142.72 Aligned_cols=93 Identities=24% Similarity=0.312 Sum_probs=74.8
Q ss_pred CCCCCCcCcEEEEec--------CCCChhHHHHHHHHHHhcCCEEEeecCCCccEEEEcCC-hHH--HHHHHHhhhcccC
Q 009303 14 DSNGIFAGMRVFLVE--------KGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDL-EAL--LQQVSKQHLARFK 82 (538)
Q Consensus 14 ~~~~~F~g~~iy~~~--------~~~g~~R~~~l~~~~~~~G~~V~~~ls~~VTHVV~~~~-~~~--~~~l~~~~~~~~~ 82 (538)
.+..||+||+|||.. ..++..|+++++++++++||+|++.++++|||||+.+. ++. ++.++. .....
T Consensus 160 ~~~~lF~~~~vy~~~~~~~~~~~~~i~~~~l~~~~~~i~~~GG~v~~~l~~~vTHVVv~~~~~r~~~~~~~~~--~~~~~ 237 (263)
T 3ii6_X 160 SPLSMFRRHTVYLDSYAVINDLSTKNEGTRLAIKALELRFHGAKVVSCLAEGVSHVIIGEDHSRVADFKAFRR--TFKRK 237 (263)
T ss_dssp CGGGTTTTCEEEECCBSSTTCGGGBCCSSHHHHHHHHHHHTTCEEESSCCTTCCEEEECSCCTTHHHHHHHHH--TCSSC
T ss_pred CcchhhCCeEEEEecccccCCcccccchhHHHHHHHHHHccCCEEecCCCCCceEEEECCCCccHHHHHHHHh--hcCCC
Confidence 467999999999964 24456689999999999999999999999999999753 332 222222 11224
Q ss_pred ccccccchHHHHHhcCcccCcccccc
Q 009303 83 GSVIRYQWLEDSLRLGEKVSEDLYRI 108 (538)
Q Consensus 83 ~~lV~~~Wl~ecik~g~lv~e~~y~l 108 (538)
++||+++||.|||++|++|||++|.+
T Consensus 238 ~~iV~~~Wv~dci~~~~~l~E~~Y~i 263 (263)
T 3ii6_X 238 FKILKESWVTDSIDKCELQEENQYLI 263 (263)
T ss_dssp CEEEETHHHHHHHHTTSCCCGGGTBC
T ss_pred CEEeChHHHHHHHHcCCcCCHhhCCC
Confidence 89999999999999999999999975
No 15
>4id3_A DNA repair protein REV1; BRCT domain, protein binding; HET: DNA; 1.97A {Saccharomyces cerevisiae S288C}
Probab=99.45 E-value=1.3e-13 Score=115.43 Aligned_cols=88 Identities=20% Similarity=0.255 Sum_probs=67.7
Q ss_pred CCCCCCCcCcEEEEecCCCChhHHHHHHHHHHhcCCEEEeecC--CCccEEEEcCChHHHHHHHHhhhcccCccccccch
Q 009303 13 LDSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLS--KKVTHVLAMDLEALLQQVSKQHLARFKGSVIRYQW 90 (538)
Q Consensus 13 ~~~~~~F~g~~iy~~~~~~g~~R~~~l~~~~~~~G~~V~~~ls--~~VTHVV~~~~~~~~~~l~~~~~~~~~~~lV~~~W 90 (538)
++...+|+|++|||...... . +..++++++++||+++..++ +.+||||+.+.... +. .. ..+.+||+++|
T Consensus 2 ~~~~~~f~g~~~~i~g~~~~-~-~~~l~~~i~~~GG~~~~~~~~~~~~THlI~~~~~~~-K~---~~--~~~~~iV~~~W 73 (92)
T 4id3_A 2 SQSSKIFKNCVIYINGYTKP-G-RLQLHEMIVLHGGKFLHYLSSKKTVTHIVASNLPLK-KR---IE--FANYKVVSPDW 73 (92)
T ss_dssp ----CTTTTCEEEECSCCSS-C-HHHHHHHHHHTTCEEESSCCCTTTCCEEECSCCCHH-HH---HH--TTTSCEECTHH
T ss_pred CccccccCCEEEEEeCCCCc-C-HHHHHHHHHHCCCEEEEEecCCCceEEEEecCCCHH-HH---HH--cCCCCEEcccH
Confidence 46778999999999653322 3 45678999999999999998 89999999765432 11 11 12478999999
Q ss_pred HHHHHhcCcccCcccccc
Q 009303 91 LEDSLRLGEKVSEDLYRI 108 (538)
Q Consensus 91 l~ecik~g~lv~e~~y~l 108 (538)
|.||+++|++|||++|.+
T Consensus 74 i~dci~~~~~l~e~~Y~l 91 (92)
T 4id3_A 74 IVDSVKEARLLPWQNYSL 91 (92)
T ss_dssp HHHHHHHTSCCCGGGGBC
T ss_pred HHHHHHcCCcCChhhccc
Confidence 999999999999999986
No 16
>2ebw_A DNA repair protein REV1; A/B/A 3 layers, parallel beta-sheet, DNA replication, translession synthesis, TLS, DNA polymerase zeta, PCNA; HET: DNA; NMR {Homo sapiens}
Probab=99.40 E-value=3.4e-13 Score=114.37 Aligned_cols=91 Identities=23% Similarity=0.372 Sum_probs=71.4
Q ss_pred CCCCCCCCCCcCcEEEEecCCCChhHHHHHHHHHHhcCCEEEeecC-CCccEEEEcCChH-HHHHHHHhhhcccCccccc
Q 009303 10 TPALDSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLS-KKVTHVLAMDLEA-LLQQVSKQHLARFKGSVIR 87 (538)
Q Consensus 10 ~~~~~~~~~F~g~~iy~~~~~~g~~R~~~l~~~~~~~G~~V~~~ls-~~VTHVV~~~~~~-~~~~l~~~~~~~~~~~lV~ 87 (538)
+.+++...+|+|++||+.....+ .++.|+++++.+||++...++ ..+||||+.+... ..+. .. +.+||+
T Consensus 4 ~~~~~~~~lF~g~~~~isg~~~~--~~~~L~~~i~~~GG~~~~~~~~~~~THlI~~~~~~~k~~~-----~~--~~~iV~ 74 (97)
T 2ebw_A 4 GSSGTSSTIFSGVAIYVNGYTDP--SAEELRKLMMLHGGQYHVYYSRSKTTHIIATNLPNAKIKE-----LK--GEKVIR 74 (97)
T ss_dssp SCCSCCCCTTTTCEEEECSSCSS--CHHHHHHHHHHTTCEECSSCCSSSCCEEECSCCCTTHHHH-----TS--SSCCBC
T ss_pred ccCCCCCCCCCCeEEEEeCCCcc--cHHHHHHHHHHcCCEEeeecCCCCCEEEEecCCChHHHHH-----hc--CCCEeC
Confidence 34566779999999999544333 357789999999999998876 6899999976532 1111 11 478999
Q ss_pred cchHHHHHhcCcccCccccccc
Q 009303 88 YQWLEDSLRLGEKVSEDLYRIK 109 (538)
Q Consensus 88 ~~Wl~ecik~g~lv~e~~y~l~ 109 (538)
++||.||+++|++||++.|.+.
T Consensus 75 p~Wl~dci~~~~~l~~~~Y~l~ 96 (97)
T 2ebw_A 75 PEWIVESIKAGRLLSYIPYQLY 96 (97)
T ss_dssp THHHHHHHHHTSCCCSGGGBSC
T ss_pred hHHHHHHHHcCCccCchHcEec
Confidence 9999999999999999999874
No 17
>3l3e_A DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, cell cycle checkpoints, acetylation, cytoplasm, cytoskeleton, DNA damage; HET: DNA; 1.26A {Homo sapiens} PDB: 3pd7_A* 3jve_A*
Probab=99.29 E-value=1.9e-12 Score=111.90 Aligned_cols=93 Identities=15% Similarity=0.199 Sum_probs=69.5
Q ss_pred CCCCCCcCcEEEEecCCCChhHHHHHHHHHHhcCCEEEeecCCCccEEEEcCCh--HHHHHHHHhhhcccCccccccchH
Q 009303 14 DSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLE--ALLQQVSKQHLARFKGSVIRYQWL 91 (538)
Q Consensus 14 ~~~~~F~g~~iy~~~~~~g~~R~~~l~~~~~~~G~~V~~~ls~~VTHVV~~~~~--~~~~~l~~~~~~~~~~~lV~~~Wl 91 (538)
....+|.|++|+|-.. -...+..+++++..+||+|...++..|||||+.... ...++.... ..+.+||+++||
T Consensus 11 ~~~~~l~g~~i~isg~--~~~~r~~l~~li~~~Gg~v~~~~s~~~THlI~~~~~~~~~~K~~~A~---~~gi~IV~~~Wl 85 (107)
T 3l3e_A 11 EAPKPLHKVVVCVSKK--LSKKQSELNGIAASLGADYRRSFDETVTHFIYQGRPNDTNREYKSVK---ERGVHIVSEHWL 85 (107)
T ss_dssp ---CTTTTCEEEECGG--GGGGHHHHHHHHHHTTCEEESSCCTTCCEEECCCCTTCCCHHHHHHH---HTTCEEECHHHH
T ss_pred cccCCCCCeEEEEeCC--ChHhHHHHHHHHHHcCCEEeccccCCceEEEecCCCCCCCHHHHHHH---HCCCeEecHHHH
Confidence 4457999999999543 224567778999999999999999999999994311 112222222 134799999999
Q ss_pred HHHHhcCcccCccccccccC
Q 009303 92 EDSLRLGEKVSEDLYRIKLD 111 (538)
Q Consensus 92 ~ecik~g~lv~e~~y~l~~~ 111 (538)
.+|+++|++|||+.|.+...
T Consensus 86 ~~c~~~~~~l~e~~Y~~~~~ 105 (107)
T 3l3e_A 86 LDCAQECKHLPESLYPHTYN 105 (107)
T ss_dssp HHHHHHTSCCCGGGCCTTCC
T ss_pred HHHHHhCCCCchhhCCCCCC
Confidence 99999999999999988643
No 18
>2d8m_A DNA-repair protein XRCC1; parallel beta-sheet, DNA ligase III, poly(ADP-ribose) polymerase-1, DNA polymerase beta, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=4.1e-12 Score=113.67 Aligned_cols=97 Identities=16% Similarity=0.253 Sum_probs=73.6
Q ss_pred CCCCCCCCCCcCcEEEEecCCCChhHHHHHHHHHHhcCCEEEeecCCCccEEEEcCChHHHHHHHHhhhcccCccccccc
Q 009303 10 TPALDSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLEALLQQVSKQHLARFKGSVIRYQ 89 (538)
Q Consensus 10 ~~~~~~~~~F~g~~iy~~~~~~g~~R~~~l~~~~~~~G~~V~~~ls~~VTHVV~~~~~~~~~~l~~~~~~~~~~~lV~~~ 89 (538)
....+...+|.|++|+|-..- +. .+..+++++..+||+|...++..+||||+.+... .++.... ....+||+.+
T Consensus 14 ~~~~~~~~~f~g~~i~itG~~-~~-~r~~l~~~i~~~Gg~v~~~~s~~~ThLI~~~~~~-~K~~~A~---~~gi~IV~~~ 87 (129)
T 2d8m_A 14 AGPEELGKILQGVVVVLSGFQ-NP-FRSELRDKALELGAKYRPDWTRDSTHLICAFANT-PKYSQVL---GLGGRIVRKE 87 (129)
T ss_dssp CCHHHHTTTSTTEEEEEESCC-TT-HHHHHHHHHHHTTEEEESSCCTTCCEEEESSSSC-HHHHHHH---HHTCEEEETH
T ss_pred ccCCCccccCCCeEEEEeCCC-cH-HHHHHHHHHHHcCCEEeCCcCCCCeEEEecCCCC-hHHHHHH---HCCCcEecHH
Confidence 334455678999999995443 33 4566789999999999999999999999975421 1222111 1247899999
Q ss_pred hHHHHHhcCcccCccccccccCC
Q 009303 90 WLEDSLRLGEKVSEDLYRIKLDP 112 (538)
Q Consensus 90 Wl~ecik~g~lv~e~~y~l~~~~ 112 (538)
||.+|+++|++|||+.|.+..++
T Consensus 88 Wl~d~~~~~~~l~e~~Y~l~~~~ 110 (129)
T 2d8m_A 88 WVLDCHRMRRRLPSQRYLMAGPG 110 (129)
T ss_dssp HHHHHHHTTSCCCGGGGBCSSSS
T ss_pred HHHHHHHhCCcCChHhcccCCCC
Confidence 99999999999999999987543
No 19
>3pc6_A DNA repair protein XRCC1; BRCT domain, protein:protein interactions, DNA L III-alpha BRCT2 domain, DNA binding protein; HET: DNA; 1.90A {Mus musculus} SCOP: c.15.1.1 PDB: 3pc8_A* 3qvg_B* 1cdz_A
Probab=99.23 E-value=2.1e-11 Score=104.95 Aligned_cols=90 Identities=12% Similarity=0.242 Sum_probs=71.0
Q ss_pred CCCCcCcEEEEecCCCChhHHHHHHHHHHhcCCEEEeecCCCccEEEEcCC-hHHHHHHHHhhhcccCccccccchHHHH
Q 009303 16 NGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDL-EALLQQVSKQHLARFKGSVIRYQWLEDS 94 (538)
Q Consensus 16 ~~~F~g~~iy~~~~~~g~~R~~~l~~~~~~~G~~V~~~ls~~VTHVV~~~~-~~~~~~l~~~~~~~~~~~lV~~~Wl~ec 94 (538)
..+|.|+++||..... ...+..+.+++..+||.|++.++++|||||++.. +..++... .......+|.++||.+|
T Consensus 5 pd~F~g~~f~l~~~~p-~~~r~~l~ryiia~GG~v~~~~~~~vTHvIt~~~~d~~~~~a~---~~~p~~~~V~P~WI~~C 80 (104)
T 3pc6_A 5 PDFFEGKHFFLYGEFP-GDERRRLIRYVTAFNGELEDYMNERVQFVITAQEWDPNFEEAL---MENPSLAFVRPRWIYSC 80 (104)
T ss_dssp CCTTTTCEEEEESCCS-TTHHHHHHHHHHHTTCEECSSCCTTCCEEEESSCCCHHHHHHH---TTCTTCEEECHHHHHHH
T ss_pred chhhCCeEEEEcCCCc-HHHHHHHHHHHHHcCCEEEcccCCCceEEEeCCCCChhHHHHh---hhCCCCeEEccHHHHHH
Confidence 4699999999965542 3456677899999999999999999999999754 23333221 12224789999999999
Q ss_pred HhcCcccCccccccc
Q 009303 95 LRLGEKVSEDLYRIK 109 (538)
Q Consensus 95 ik~g~lv~e~~y~l~ 109 (538)
++.+++||++.|.+.
T Consensus 81 i~~~klvp~~~y~~~ 95 (104)
T 3pc6_A 81 NEKQKLLPHQLYGVV 95 (104)
T ss_dssp HHHTSCCCGGGGBCC
T ss_pred HhcCccCCcccceec
Confidence 999999999999885
No 20
>2cou_A ECT2 protein; BRCT domain, RHO GTPase, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.23 E-value=3.3e-12 Score=111.00 Aligned_cols=88 Identities=13% Similarity=0.167 Sum_probs=70.4
Q ss_pred CCCCcCcEEEEecCCCChhHHHHHHHHHHhcCCEEEeecCCCccEEEEcCChHHHHHHHHhhhcccCccccccchHHHHH
Q 009303 16 NGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLEALLQQVSKQHLARFKGSVIRYQWLEDSL 95 (538)
Q Consensus 16 ~~~F~g~~iy~~~~~~g~~R~~~l~~~~~~~G~~V~~~ls~~VTHVV~~~~~~~~~~l~~~~~~~~~~~lV~~~Wl~eci 95 (538)
-.+|.||+|+| .++....+..+++++.++||.+...+++.+||||+.+.... +.+.....+.+||+.+||.||+
T Consensus 10 ~~~F~g~~i~~--sg~~~~~r~~l~~~i~~~GG~~~~~~~~~~THLV~~~~~~~----K~~~a~~~~i~IV~~~Wl~dsi 83 (109)
T 2cou_A 10 VPPFQDCILSF--LGFSDEEKHSMEEMTEMQGGSYLPVGDERCTHLIVEENTVK----DLPFEPSKKLFVVKQEWFWGSI 83 (109)
T ss_dssp CCTTTTCBEEE--ESSCHHHHHHHHHHHHHHTCBCCCTTCTTCSEEEECTTTCS----SCSSCCCTTSEEECHHHHHHHH
T ss_pred CCcCCCeEEEe--cCCCHHHHHHHHHHHHHcCCEEecccCCCccEEEEeCCccH----HHHHHHHCCCeEecHHHHHHHH
Confidence 46899999999 55765666777899999999999999999999999654311 0111112357999999999999
Q ss_pred hcCcccCccccccc
Q 009303 96 RLGEKVSEDLYRIK 109 (538)
Q Consensus 96 k~g~lv~e~~y~l~ 109 (538)
+.|+++||..|.+.
T Consensus 84 ~~g~~ldE~~Y~~~ 97 (109)
T 2cou_A 84 QMDARAGETMYLYE 97 (109)
T ss_dssp HTTSCCCGGGTBCC
T ss_pred HcCCcCChhccCCC
Confidence 99999999999885
No 21
>2ep8_A Pescadillo homolog 1; A/B/A 3 layers, nucleolus, ribosome biogenesis, DNA damage, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.14 E-value=4.2e-11 Score=102.43 Aligned_cols=84 Identities=15% Similarity=0.215 Sum_probs=65.6
Q ss_pred CCCCCCCCcCcEEEEecCCCChhHHHHHHHHHHhcCCEEEee-----------cCCCccEEEEcCChHHHHHHHHhhhcc
Q 009303 12 ALDSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEK-----------LSKKVTHVLAMDLEALLQQVSKQHLAR 80 (538)
Q Consensus 12 ~~~~~~~F~g~~iy~~~~~~g~~R~~~l~~~~~~~G~~V~~~-----------ls~~VTHVV~~~~~~~~~~l~~~~~~~ 80 (538)
......+|+|+++||.. ...+..|...++++||.|+.. .+++|||+|++.... + . ..
T Consensus 6 ~~~~~~LF~g~~F~i~~----e~p~~~le~~I~~~GG~v~~~~~~~~g~~~~~~~~~iTh~I~drp~~-----~-~--~~ 73 (100)
T 2ep8_A 6 SGKHKKLFEGLKFFLNR----EVPREALAFIIRSFGGEVSWDKSLCIGATYDVTDSRITHQIVDRPGQ-----Q-T--SV 73 (100)
T ss_dssp CSCSCCTTSSCEEECCS----SSCHHHHHHHHHHTTCEEECCTTTSSCCCSCTTCTTCCEEECSCTTT-----S-C--CB
T ss_pred cCchHHHcCCcEEEEec----CCCHHHHHHHHHHcCCEEEeccccccCcccccCCCceEEEEecccch-----h-h--hc
Confidence 45667899999999953 234678889999999999875 357899999975421 1 0 11
Q ss_pred cCccccccchHHHHHhcCcccCccccc
Q 009303 81 FKGSVIRYQWLEDSLRLGEKVSEDLYR 107 (538)
Q Consensus 81 ~~~~lV~~~Wl~ecik~g~lv~e~~y~ 107 (538)
.+..+|.++||.||++++++||+++|.
T Consensus 74 ~~r~~VqPqWV~Dcin~~~lLp~~~Y~ 100 (100)
T 2ep8_A 74 IGRCYVQPQWVFDSVNARLLLPVAEYF 100 (100)
T ss_dssp TTBEEECTHHHHHHHHHTSCCCTTTCC
T ss_pred CCCeEEcchHHHHHHhcCCcCChhhcC
Confidence 235899999999999999999999984
No 22
>3l46_A Protein ECT2; alternative splicing, guanine-nucleotide releasing factor, phosphoprotein, polymorphism, proto-oncogene, structural genomics; 1.48A {Homo sapiens}
Probab=99.11 E-value=4.2e-11 Score=104.47 Aligned_cols=88 Identities=13% Similarity=0.142 Sum_probs=72.0
Q ss_pred CCCcCcEEEEecCCCChhHHHHHHHHHHhcCCEEEeecCCCccEEEEcCChHHHHHHHHhhhcccCccccccchHHHHHh
Q 009303 17 GIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLEALLQQVSKQHLARFKGSVIRYQWLEDSLR 96 (538)
Q Consensus 17 ~~F~g~~iy~~~~~~g~~R~~~l~~~~~~~G~~V~~~ls~~VTHVV~~~~~~~~~~l~~~~~~~~~~~lV~~~Wl~ecik 96 (538)
..|.||+|+| .++....+.-+++++.++||.+...+...+||+|+.+.... +.......+.+||+.+||.||++
T Consensus 20 p~F~g~~Ic~--sGf~~~er~~l~~~i~~~GG~~~~~l~~~cTHLV~~~~~~~----K~~~A~~~~i~IVs~eWl~dsi~ 93 (112)
T 3l46_A 20 PPFQDCILSF--LGFSDEEKTNMEEMTEMQGGKYLPLGDERCTHLVVEENIVK----DLPFEPSKKLYVVKQEWFWGSIQ 93 (112)
T ss_dssp CTTTTCEECE--ESCCHHHHHHHHHHHHHTTCEECCTTCTTCSEEEECTTTBS----SCSSCCCSSCEEEEHHHHHHHHH
T ss_pred CccCCeEEEE--eCCCHHHHHHHHHHHHHcCCEECcccCCCceEEEecCCchh----hHHHHHHCCeeEecHHHHHHHHH
Confidence 6899999999 56766667788999999999999999999999999765321 11111223589999999999999
Q ss_pred cCcccCcccccccc
Q 009303 97 LGEKVSEDLYRIKL 110 (538)
Q Consensus 97 ~g~lv~e~~y~l~~ 110 (538)
.|.++||..|.+..
T Consensus 94 ~g~~ldE~~Y~~~~ 107 (112)
T 3l46_A 94 MDARAGETMYLYEK 107 (112)
T ss_dssp HTSCCCGGGSBCCC
T ss_pred cCCccChhhceecc
Confidence 99999999999963
No 23
>1z56_C DNA ligase IV; DNA repair, BRCT, NHEJ, XRCC4, DNA ligase, coiled-coil; HET: DNA; 3.92A {Saccharomyces cerevisiae}
Probab=99.10 E-value=2e-11 Score=121.84 Aligned_cols=95 Identities=13% Similarity=0.184 Sum_probs=54.3
Q ss_pred CCCCCCCcCcEEEEecCCCChhHHHHHHHHHHhcCCEEEeecCCCccEEEEcCCh----HHHHHHHHhhhcc-------c
Q 009303 13 LDSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLE----ALLQQVSKQHLAR-------F 81 (538)
Q Consensus 13 ~~~~~~F~g~~iy~~~~~~g~~R~~~l~~~~~~~G~~V~~~ls~~VTHVV~~~~~----~~~~~l~~~~~~~-------~ 81 (538)
..+..+|+||++||... .+..+++++...++++||+|++.++..+||||+.... ..++.++.....+ .
T Consensus 155 ~~~~~lF~g~~~yl~~~-~~~~~~~~l~~~i~~~GG~v~~~l~~~t~hVV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (264)
T 1z56_C 155 RFPLFLFSNRIAYVPRR-KISTEDDIIEMKIKLFGGKITDQQSLCNLIIIPYTDPILRKDCMNEVHEKIKEQIKASDTIP 233 (264)
T ss_dssp CCCCC---------------------CHHHHHHHTTSCCCCSSSCSEEECCCSSTTTHHHHSSHHHHTTTTTTTSSSSCC
T ss_pred cCchhhhCCeEEEEecC-CCchhHHHHHHHHHHcCCEEecccCCCEEEEEeCCCccchHHHHHHHHHHHHhhcccccccC
Confidence 46789999999999765 2356788999999999999999998777777764321 1222333322222 1
Q ss_pred C-ccccccchHHHHHhcCcccCcccccc
Q 009303 82 K-GSVIRYQWLEDSLRLGEKVSEDLYRI 108 (538)
Q Consensus 82 ~-~~lV~~~Wl~ecik~g~lv~e~~y~l 108 (538)
+ ++||.++||.+||++|++|||+.|.+
T Consensus 234 ~~~~iV~~~Wv~dci~~~~ll~e~~Y~~ 261 (264)
T 1z56_C 234 KIARVVAPEWVDHSINENCQVPEEDFPV 261 (264)
T ss_dssp CCCEEECTHHHHHHHTTSCCCSSCCC--
T ss_pred CCCEEecHHHHHHHHHcCCcCCHHHcCC
Confidence 3 59999999999999999999999976
No 24
>2kp7_A Crossover junction endonuclease MUS81; helix-hairpin-helix, tumour suppressor, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; NMR {Mus musculus}
Probab=98.99 E-value=7.8e-10 Score=91.93 Aligned_cols=68 Identities=15% Similarity=0.214 Sum_probs=62.0
Q ss_pred CCcHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCccccchhhhcCCCCCCHHHHHHHHHHHHh
Q 009303 208 DLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTT 276 (538)
Q Consensus 208 ~~N~~ia~~l~~la~~~e~~g~~~r~~aY~rAa~~l~~l~~~i~~~~~l~~lpgIG~~ia~kI~Eil~t 276 (538)
..|..|++-|+++++.++.. +..++.+|++|+.+|+++|.+|.+..|+..|+|||++|+++|.|+|+.
T Consensus 13 ~~N~lf~~wL~e~~~~a~~r-~~k~~~~Y~KA~~sLk~~P~~i~s~~e~~~L~giG~ki~~~L~e~L~~ 80 (87)
T 2kp7_A 13 CPNPLFVRWLTEWRDEAASR-GRHTRFVFQKALRSLQRYPLPLRSGKEAKILQHFGDRLCRMLDEKLKQ 80 (87)
T ss_dssp SCCCHHHHHHHHHHHHHHHH-TCTTHHHHHHHHHHHHHCCSCCCSHHHHHTCTTTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHhCCCCCCCHHHHHHhhcccHHHHHHHHHHHHH
Confidence 45999999999999988844 356788999999999999999999999999999999999999999863
No 25
>2nte_A BARD-1, BRCA1-associated ring domain protein 1; BRCT, ring finger, zinc-binding protein, ubiquitin LI antitumor protein; 1.90A {Homo sapiens} PDB: 3fa2_A 2r1z_A
Probab=98.95 E-value=9.3e-10 Score=105.95 Aligned_cols=81 Identities=19% Similarity=0.352 Sum_probs=67.5
Q ss_pred EecCCCChhHHHHHHHHHHhcCCEEEeecCCCccEEEEcC--ChHHHHHHHHhhhcccCccccccchHHHHHhcCcccCc
Q 009303 26 LVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMD--LEALLQQVSKQHLARFKGSVIRYQWLEDSLRLGEKVSE 103 (538)
Q Consensus 26 ~~~~~~g~~R~~~l~~~~~~~G~~V~~~ls~~VTHVV~~~--~~~~~~~l~~~~~~~~~~~lV~~~Wl~ecik~g~lv~e 103 (538)
|+.+++...++..+.++++++||.+++.+++.+||||+.+ ..+..+++.. +.. ..+||+.+||++|+++|++|||
T Consensus 5 i~~sg~~~~~~~~l~~~~~~~G~~~~~~~~~~~THlV~~~~~~~rt~K~l~a--~~~-g~~IV~~~Wl~~c~~~~~~~~e 81 (210)
T 2nte_A 5 LIGSGLSSEQQKMLSELAVILKAKKYTEFDSTVTHVVVPGDAVQSTLKCMLG--ILN-GCWILKFEWVKACLRRKVCEQE 81 (210)
T ss_dssp EEESSCCHHHHHHHHHHHHHTTCEEESSCCTTCCEEEESSSSCCCSHHHHHH--HHT-TCEEEETHHHHHHHHHTSCCCG
T ss_pred EEECCCCHHHHHHHHHHHHHcCCEEeCCCCCCCeEEEEcCCCcchHHHHHHH--Hhc-CCEEecHHHHHHHHHcCCcCCh
Confidence 3448898888999999999999999999999999999976 3445555542 222 3689999999999999999999
Q ss_pred cccccc
Q 009303 104 DLYRIK 109 (538)
Q Consensus 104 ~~y~l~ 109 (538)
+.|.+.
T Consensus 82 ~~y~~~ 87 (210)
T 2nte_A 82 EKYEIP 87 (210)
T ss_dssp GGTBCT
T ss_pred hhccCC
Confidence 999985
No 26
>1t15_A Breast cancer type 1 susceptibility protein; protein-peptide complex, antitumor protein; HET: SEP; 1.85A {Homo sapiens} SCOP: c.15.1.3 c.15.1.3 PDB: 1jnx_X* 1t29_A* 1t2v_A* 1y98_A* 3coj_X* 3k0h_A* 3k0k_A* 3pxe_A* 3pxb_A 3pxc_X 1t2u_A 1n5o_X 3pxa_A 3k15_A* 3k16_A* 3pxd_A 2ing_X 1oqa_A
Probab=98.88 E-value=1.2e-09 Score=104.90 Aligned_cols=82 Identities=17% Similarity=0.254 Sum_probs=67.5
Q ss_pred EEecCCCChhHHHHHHHHHHhcCCEEEeecCCCccEEEEcCC-----hHHHHHHHHhhhcccCccccccchHHHHHhcCc
Q 009303 25 FLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDL-----EALLQQVSKQHLARFKGSVIRYQWLEDSLRLGE 99 (538)
Q Consensus 25 y~~~~~~g~~R~~~l~~~~~~~G~~V~~~ls~~VTHVV~~~~-----~~~~~~l~~~~~~~~~~~lV~~~Wl~ecik~g~ 99 (538)
+|+.++++..++..+.++++++||.+++.+++.+||||+.+. .+..+++..- .. ...||+++||.+|+++|+
T Consensus 6 ~~~~sg~~~~~~~~l~~~~~~~G~~~~~~~~~~~THli~~~~~~~~~~rt~k~~~a~--~~-g~~IV~~~Wl~~~~~~~~ 82 (214)
T 1t15_A 6 SMVVSGLTPEEFMLVYKFARKHHITLTNLITEETTHVVMKTDAEFVCERTLKYFLGI--AG-GKWVVSYFWVTQSIKERK 82 (214)
T ss_dssp EEEEESCCHHHHHHHHHHHHHHTCEECSSCCTTCCEEEECBCTTSEECCBHHHHHHH--HT-TCEEEETHHHHHHHHTTS
T ss_pred EEEECCCCHHHHHHHHHHHHHhCCEEeCccCCCCcEEEEeCCcccchhhhHHHHHHH--hc-CCEEeCHHHHHHHHHCCC
Confidence 344578888889999999999999999999999999999764 3344544432 22 367999999999999999
Q ss_pred ccCccccccc
Q 009303 100 KVSEDLYRIK 109 (538)
Q Consensus 100 lv~e~~y~l~ 109 (538)
+|||+.|.+.
T Consensus 83 ~~~e~~y~~~ 92 (214)
T 1t15_A 83 MLNEHDFEVR 92 (214)
T ss_dssp CCCGGGGBCC
T ss_pred cCChHHeEee
Confidence 9999999886
No 27
>3pc7_A DNA ligase 3; DNA repair, BRCT domain, protein:protein interactions, XRCC1 domain, DNA binding protein; HET: DNA MSE; 1.65A {Homo sapiens} SCOP: c.15.1.2 PDB: 3pc8_C* 1imo_A* 1in1_A* 3qvg_A*
Probab=98.85 E-value=1.4e-09 Score=90.35 Aligned_cols=74 Identities=19% Similarity=0.318 Sum_probs=59.4
Q ss_pred CCCCCcCcEEEEecCCCChhHHHHHHHHHHhcCCEEEeecC-CCccEEEEcCChHHHHHHHHhhhcccCccccccchHHH
Q 009303 15 SNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLS-KKVTHVLAMDLEALLQQVSKQHLARFKGSVIRYQWLED 93 (538)
Q Consensus 15 ~~~~F~g~~iy~~~~~~g~~R~~~l~~~~~~~G~~V~~~ls-~~VTHVV~~~~~~~~~~l~~~~~~~~~~~lV~~~Wl~e 93 (538)
-..+|.|+++|+... .+ +...|.++++.+||.|+..++ ++|||||+.+. .....++|.++||-|
T Consensus 13 LpdiFsg~~~~l~~~-v~--~~~~l~RyiiAfgG~v~~~~~~~~vTHvI~~~~------------~~~~~~~V~p~WI~d 77 (88)
T 3pc7_A 13 LLDIFTGVRLYLPPS-TP--DFSRLRRYFVAFDGDLVQEFDMTSATHVLGSRD------------KNPAAQQVSPEWIWA 77 (88)
T ss_dssp CCCCSTTCEECCCTT-ST--THHHHHHHHHHTTCEECCGGGGGGCSEEESCCT------------TCTTSEEECHHHHHH
T ss_pred CChhhcCeEEEccCC-cC--chhhheeeeeecCCEEecccCCCcCeEEecCCC------------cCCCCcEEchHHHHH
Confidence 358999999998543 33 236788999999999988775 58999997653 122368999999999
Q ss_pred HHhcCcccCc
Q 009303 94 SLRLGEKVSE 103 (538)
Q Consensus 94 cik~g~lv~e 103 (538)
|++.|++|++
T Consensus 78 cI~k~~Ll~~ 87 (88)
T 3pc7_A 78 CIRKRRLVAP 87 (88)
T ss_dssp HHHHTSCCSC
T ss_pred HHhCCcccCC
Confidence 9999999985
No 28
>1l0b_A BRCA1; TANDEM-BRCT, three-helix bundle, unknown function; 2.30A {Rattus norvegicus} SCOP: c.15.1.3 c.15.1.3
Probab=98.84 E-value=2.9e-09 Score=103.59 Aligned_cols=88 Identities=15% Similarity=0.245 Sum_probs=71.5
Q ss_pred CCCcCcEEEEecCCCChhHHHHHHHHHHhcCCEEEeecCCCccEEEEcCC-----hHHHHHHHHhhhcccCccccccchH
Q 009303 17 GIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDL-----EALLQQVSKQHLARFKGSVIRYQWL 91 (538)
Q Consensus 17 ~~F~g~~iy~~~~~~g~~R~~~l~~~~~~~G~~V~~~ls~~VTHVV~~~~-----~~~~~~l~~~~~~~~~~~lV~~~Wl 91 (538)
.-+++++|.+ +++.......+.++++.+||.+++.+++.+||||+... .+..+.+..- .. ...||+.+||
T Consensus 3 ~~~~~~~i~~--sg~~~~~~~~l~~~~~~~G~~~~~~~~~~~THlI~~~~~~~~~~rt~K~~~a~--~~-g~~IV~~~Wl 77 (229)
T 1l0b_A 3 RAERDISMVV--SGLTPKEVMIVQKFAEKYRLALTDVITEETTHVIIKTDAEFVCERTLKYFLGI--AG-GKWIVSYSWV 77 (229)
T ss_dssp CCCCCCEEEE--ESCCHHHHHHHHHHHHHTTCEECSSCCSSCCEEEECBCTTSEECCCHHHHHHH--HT-TCEEEETHHH
T ss_pred CCCCCeEEEE--cCCCHHHHHHHHHHHHHcCCEEeCCcCCCCCEEEEcCCccccccccHHHHHHH--HC-CCcEecHHHH
Confidence 3477888888 77887778889999999999999999999999999764 2334443321 12 3579999999
Q ss_pred HHHHhcCcccCccccccc
Q 009303 92 EDSLRLGEKVSEDLYRIK 109 (538)
Q Consensus 92 ~ecik~g~lv~e~~y~l~ 109 (538)
.+|+++|++|||+.|.+.
T Consensus 78 ~~~~~~~~~~~e~~y~~~ 95 (229)
T 1l0b_A 78 IKSIQERKLLSVHEFEVK 95 (229)
T ss_dssp HHHHTTTSCCCSGGGBCC
T ss_pred HHHHHCCCcCChHHeEec
Confidence 999999999999999885
No 29
>3ef0_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, ALF4, transition state analog, cobalt, magnesium; 2.10A {Schizosaccharomyces pombe}
Probab=98.75 E-value=8.6e-09 Score=107.80 Aligned_cols=90 Identities=18% Similarity=0.201 Sum_probs=67.8
Q ss_pred CCCCcCcEEEEecCC--CChhHHHHHHHHHHhcCCEEEeecCCCccEEEEcCChHHHHHHHHhhhcccCccccccchHHH
Q 009303 16 NGIFAGMRVFLVEKG--VQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLEALLQQVSKQHLARFKGSVIRYQWLED 93 (538)
Q Consensus 16 ~~~F~g~~iy~~~~~--~g~~R~~~l~~~~~~~G~~V~~~ls~~VTHVV~~~~~~~~~~l~~~~~~~~~~~lV~~~Wl~e 93 (538)
..+|+||+|+|-..- +....+.-+.+++.++||+|...++++|||||+.+... .+...... ..+.+||++.||.+
T Consensus 280 ~~~L~G~~ivfSG~~~~~~~~~~~~l~~l~~~lGa~v~~~vs~~vTHLVa~~~~t-~K~~~A~~--~~~I~IV~~~Wl~~ 356 (372)
T 3ef0_A 280 QKVLKGCRLLFSGVIPLGVDVLSSDIAKWAMSFGAEVVLDFSVPPTHLIAAKIRT-EKVKKAVS--MGNIKVVKLNWLTE 356 (372)
T ss_dssp TTTSTTCEEEEESSSCTTSCTTTSHHHHHHHHTTCEEESSSSSCCSEEEECSCCC-HHHHHHHH--SSSCCEEEHHHHHH
T ss_pred hhhcCCcEEEEecccCCCcchhHHHHHHHHHHcCCEEeCcCCCCceEEEEcCCCc-hHHHHHHh--cCCCEEEcHHHHHH
Confidence 378999999995432 11223455679999999999999999999999965321 11222111 22479999999999
Q ss_pred HHhcCcccCcccccc
Q 009303 94 SLRLGEKVSEDLYRI 108 (538)
Q Consensus 94 cik~g~lv~e~~y~l 108 (538)
|++.|++|||+.|.+
T Consensus 357 c~~~~~~vdE~~Y~l 371 (372)
T 3ef0_A 357 SLSQWKRLPESDYLL 371 (372)
T ss_dssp HHHTTSCCCGGGGBC
T ss_pred HHHhCCcCChhhcee
Confidence 999999999999986
No 30
>3ii6_X DNA ligase 4; XRCC4, NHEJ, DNA repair, BRCT, alternative splicing, coiled coil, DNA damage, DNA recombination, isopeptide bond, nucleus; HET: DNA; 2.40A {Homo sapiens} PDB: 2e2w_A*
Probab=98.73 E-value=1.5e-08 Score=101.21 Aligned_cols=93 Identities=11% Similarity=0.173 Sum_probs=67.8
Q ss_pred CCCCCCCCcCcEEEEecCCCChhHHHHHHHHHHhcCCEEEeecCCCccEEEEcCChHHHHHHHHhhhcccCccccccchH
Q 009303 12 ALDSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLEALLQQVSKQHLARFKGSVIRYQWL 91 (538)
Q Consensus 12 ~~~~~~~F~g~~iy~~~~~~g~~R~~~l~~~~~~~G~~V~~~ls~~VTHVV~~~~~~~~~~l~~~~~~~~~~~lV~~~Wl 91 (538)
.+..+.+|.|+++|+..- .....++-|+++++++||+|+...++.+||||+.......+.+ ..+.+..||+++||
T Consensus 4 ~~~~s~lF~G~~f~V~sg-~~~~~k~~L~~lI~~~GG~v~~n~~~~t~~iIa~~~~~k~~~~----~~~g~~~IV~p~Wv 78 (263)
T 3ii6_X 4 GSKISNIFEDVEFCVMSG-TDSQPKPDLENRIAEFGGYIVQNPGPDTYCVIAGSENIRVKNI----ILSNKHDVVKPAWL 78 (263)
T ss_dssp --CCCCTTTTCEEEECCC-C--CCHHHHHHHHHHTTCEECSSCCTTEEEEECSSCCHHHHHH----HHSCSCCEECHHHH
T ss_pred CCcCcccCCCeEEEEEcC-CCCCCHHHHHHHHHHcCCEEEecCCCCEEEEEeCCCCHHHHHH----HhcCCCCEeehHHH
Confidence 345678999999998642 2223356678999999999998888778888887654221111 11223689999999
Q ss_pred HHHHhcCcccCccccccc
Q 009303 92 EDSLRLGEKVSEDLYRIK 109 (538)
Q Consensus 92 ~ecik~g~lv~e~~y~l~ 109 (538)
.||+++|++||+++|.+.
T Consensus 79 ~Dci~~~~llp~~p~~~~ 96 (263)
T 3ii6_X 79 LECFKTKSFVPWQPRFMI 96 (263)
T ss_dssp HHHHHHTSCCCCCGGGEE
T ss_pred HHHHhcCCcCCCCHHHHh
Confidence 999999999999888765
No 31
>3olc_X DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, RAD9, DNA binding protein; HET: DNA; 2.40A {Homo sapiens} PDB: 2xnk_A* 2xnh_A*
Probab=98.72 E-value=1.8e-08 Score=102.49 Aligned_cols=90 Identities=20% Similarity=0.302 Sum_probs=71.2
Q ss_pred CCCCCcCcEEEEecCCCChhHHHHHHHHHHhcCCEEEeecC-CCccEEEEcCChHHHHHHHHhhhcccCccccccchHHH
Q 009303 15 SNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLS-KKVTHVLAMDLEALLQQVSKQHLARFKGSVIRYQWLED 93 (538)
Q Consensus 15 ~~~~F~g~~iy~~~~~~g~~R~~~l~~~~~~~G~~V~~~ls-~~VTHVV~~~~~~~~~~l~~~~~~~~~~~lV~~~Wl~e 93 (538)
...+|+|++|+| ++.....+.-+++++..+||++...++ ..+||||+.+.... ++... ...+.+||+.+||.|
T Consensus 196 ~~~~f~g~~i~~--tG~~~~~r~~l~~li~~~GG~~~~~ls~~~~THLI~~~~~g~-K~~~A---~~~gi~IV~~~Wl~d 269 (298)
T 3olc_X 196 KCPIFLGCIICV--TGLCGLDRKEVQQLTVKHGGQYMGQLKMNECTHLIVQEPKGQ-KYECA---KRWNVHCVTTQWFFD 269 (298)
T ss_dssp BCCTTTTCEEEE--CSCCHHHHHHHHHHHHHTTCEECSSCCTTTCCEEECSSSCSH-HHHHH---HHTTCEEECHHHHHH
T ss_pred cccccCCeEEEE--eCCCCccHHHHHHHHHHcCCEEeceecCCCceEEEEeCCCch-HHHHH---HHCCCeEEeHHHHHH
Confidence 357899999999 556545567788999999999999998 79999999654321 11111 122489999999999
Q ss_pred HHhcCcccCcccccccc
Q 009303 94 SLRLGEKVSEDLYRIKL 110 (538)
Q Consensus 94 cik~g~lv~e~~y~l~~ 110 (538)
|++.|+++||+.|.+..
T Consensus 270 si~~g~~lde~~Y~l~~ 286 (298)
T 3olc_X 270 SIEKGFCQDESIYKTEP 286 (298)
T ss_dssp HHHHTSCCCGGGSBSCC
T ss_pred HHHCCCCCCchhcCCCC
Confidence 99999999999999964
No 32
>1kzy_C Tumor suppressor P53-binding protein 1; tandem-BRCT and linker complexed with non-BRCT protein, three-helix bundle, parallel beta sheet; 2.50A {Homo sapiens} SCOP: c.15.1.4 c.15.1.4 PDB: 1gzh_B
Probab=98.55 E-value=1.1e-07 Score=94.71 Aligned_cols=97 Identities=12% Similarity=0.055 Sum_probs=73.0
Q ss_pred CCCCCCCCCCcCcEEEEecCCCC---------------------------hhHHHHHHHHHHhcCCEEEeecCCC-----
Q 009303 10 TPALDSNGIFAGMRVFLVEKGVQ---------------------------NRRLQIWRQKLVQMGATVEEKLSKK----- 57 (538)
Q Consensus 10 ~~~~~~~~~F~g~~iy~~~~~~g---------------------------~~R~~~l~~~~~~~G~~V~~~ls~~----- 57 (538)
.|.+....+|.|+.++|-..... .....-|+++++.+||.|++.+.+.
T Consensus 7 ~p~p~~~~iF~g~~F~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~~~I~~~GG~v~~~~~~~~~~~~ 86 (259)
T 1kzy_C 7 GPLPLNKTLFLGYAFLLTMATTSDKLASRSKLPDGPTGSSEEEEEFLEIPPFNKQYTESQLRAGAGYILEDFNEAQCNTA 86 (259)
T ss_dssp CCCCSSTTTTTTEEEEECCCC---------------------------CCCCCHHHHHHHHHTTTCEECSSCCTTTTTTT
T ss_pred CCCCCCCcCcCCcEEEEEcccccccccccccccccccccccccccccccCcccHHHHHHHHHHCCCEEecCccccccccC
Confidence 34566789999999998432111 1244678999999999999988654
Q ss_pred -ccEEEEcCChHHHHHHHHhhhcccCccccccchHHHHHhcCcccCccccccc
Q 009303 58 -VTHVLAMDLEALLQQVSKQHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIK 109 (538)
Q Consensus 58 -VTHVV~~~~~~~~~~l~~~~~~~~~~~lV~~~Wl~ecik~g~lv~e~~y~l~ 109 (538)
.||+|+....+..+.+..-. ....||+.+||.+|+++|+++|++.|.+.
T Consensus 87 ~~t~LIa~~~~rt~K~l~ala---~g~~iVs~~Wl~dc~~~~~~l~~~~Y~l~ 136 (259)
T 1kzy_C 87 YQCLLIADQHCRTRKYFLCLA---SGIPCVSHVWVHDSCHANQLQNYRNYLLP 136 (259)
T ss_dssp CEEEEEESSCCCSHHHHHHHH---HTCCEEETHHHHHHHHHTSCCCGGGSBCC
T ss_pred CCeEEEcCCCCCcHHHHHHHh---cCCCCccHHHHHHHHHcCCcCCHHHccCC
Confidence 79999976555445544321 13679999999999999999999999985
No 33
>3ef1_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, BEF3, acylphosphate analog, cobalt, magnesium; HET: BFD; 2.15A {Schizosaccharomyces pombe}
Probab=98.55 E-value=6.2e-08 Score=102.87 Aligned_cols=89 Identities=20% Similarity=0.277 Sum_probs=67.2
Q ss_pred CCCCcCcEEEEecC---CCChhHHHHHHHHHHhcCCEEEeecCCCccEEEEcCChHHHHHHHHhhhcccCccccccchHH
Q 009303 16 NGIFAGMRVFLVEK---GVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLEALLQQVSKQHLARFKGSVIRYQWLE 92 (538)
Q Consensus 16 ~~~F~g~~iy~~~~---~~g~~R~~~l~~~~~~~G~~V~~~ls~~VTHVV~~~~~~~~~~l~~~~~~~~~~~lV~~~Wl~ 92 (538)
..+|+||+|.|-.. .....| .-+.+++..+||++...++..|||||+.+... .++..... ..+.+||+.+||.
T Consensus 350 ~~~L~G~~IvfSG~~p~~~~~~r-~~l~~~~~~lGa~~~~~vs~~vTHLVa~~~~t-~K~~~A~~--~g~IkIVs~~WL~ 425 (442)
T 3ef1_A 350 QKVLKGCRLLFSGVIPLGVDVLS-SDIAKWAMSFGAEVVLDFSVPPTHLIAAKIRT-EKVKKAVS--MGNIKVVKLNWLT 425 (442)
T ss_dssp HTTSTTCEEEEESSSCTTSCSTT-SHHHHHHHTTTCEECSSSSSCCSEEEECSCCC-HHHHHHHH--HSSSEEEEHHHHH
T ss_pred hcccCCcEEEEecccCCCCCccH-HHHHHHHHHcCCEEeCCCCCCceEEEeCCCCC-HHHHHHHh--cCCCEEEeHHHHH
Confidence 36899999998543 222234 44579999999999999999999999965421 12222221 1247999999999
Q ss_pred HHHhcCcccCcccccc
Q 009303 93 DSLRLGEKVSEDLYRI 108 (538)
Q Consensus 93 ecik~g~lv~e~~y~l 108 (538)
+|++.|+++||..|.+
T Consensus 426 dcl~~~krldE~~YlL 441 (442)
T 3ef1_A 426 ESLSQWKRLPESDYLL 441 (442)
T ss_dssp HHHHHTSCCCGGGTBC
T ss_pred HHHHcCCcCChhcccc
Confidence 9999999999999986
No 34
>3u3z_A Microcephalin; DNA repair, cell cycle regulation, cell cycle; HET: SEP PTR; 1.50A {Homo sapiens} PDB: 3szm_A* 3t1n_A* 3sht_A 3shv_A*
Probab=98.54 E-value=7.6e-08 Score=92.14 Aligned_cols=81 Identities=23% Similarity=0.339 Sum_probs=63.5
Q ss_pred EecCCCChhHHHHHHHHHHhcCC-EEEeecCCCccEEEEcCChHHHHHHHHhhhcccCccccccchHHHHHhcCcccCcc
Q 009303 26 LVEKGVQNRRLQIWRQKLVQMGA-TVEEKLSKKVTHVLAMDLEALLQQVSKQHLARFKGSVIRYQWLEDSLRLGEKVSED 104 (538)
Q Consensus 26 ~~~~~~g~~R~~~l~~~~~~~G~-~V~~~ls~~VTHVV~~~~~~~~~~l~~~~~~~~~~~lV~~~Wl~ecik~g~lv~e~ 104 (538)
|+-+++.......+.+.+...|| .+++.+++.+||||+....+..+.+..- .. ...||+.+||.+|+++|+.+||+
T Consensus 14 ~~~sgl~~~~~~~l~~~i~~lgG~~~~~~~~~~~THlv~~~~~rT~K~l~ai--~~-g~~Iv~~~Wv~~~~~~g~~l~e~ 90 (199)
T 3u3z_A 14 LVMTSMPSEKQNVVIQVVDKLKGFSIAPDVCETTTHVLSGKPLRTLNVLLGI--AR-GCWVLSYDWVLWSLELGHWISEE 90 (199)
T ss_dssp EEEESCCHHHHHHHHHHHHHHCSCEEESSCCTTEEEEEESSCCCBHHHHHHH--HT-TCEEEETHHHHHHHHHTSCCCSG
T ss_pred EEEcCCCHHHHHHHHHHHHHcCCcEEecCCCCCCeEEEECCCCCCHHHHHHH--HC-CCcEEeHHHHHHHhhCCCCCChh
Confidence 44578877777778899999866 7778899999999996654444444422 12 36799999999999999999999
Q ss_pred ccccc
Q 009303 105 LYRIK 109 (538)
Q Consensus 105 ~y~l~ 109 (538)
.|.+.
T Consensus 91 ~y~~~ 95 (199)
T 3u3z_A 91 PFELS 95 (199)
T ss_dssp GGBCT
T ss_pred hcccc
Confidence 99885
No 35
>3sqd_A PAX-interacting protein 1; tandem BRCT domains, cell cycle; HET: SEP; 2.15A {Homo sapiens}
Probab=98.52 E-value=8.4e-08 Score=93.24 Aligned_cols=85 Identities=21% Similarity=0.386 Sum_probs=68.4
Q ss_pred CcCcEEEEecCCCChhHHHHHHHHHHhcCCEEEeecCCCccEEEEcCChHHHHHHHHhhhcccCccccccchHHHHHhcC
Q 009303 19 FAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLEALLQQVSKQHLARFKGSVIRYQWLEDSLRLG 98 (538)
Q Consensus 19 F~g~~iy~~~~~~g~~R~~~l~~~~~~~G~~V~~~ls~~VTHVV~~~~~~~~~~l~~~~~~~~~~~lV~~~Wl~ecik~g 98 (538)
..+++|.| +|+.......+++.++.+||.|++.. ..+||+|+.+..+..+++.. + .....||+.+||.+|+++|
T Consensus 14 ~~~~~i~~--SG~~~~~~~~l~~~i~~lGg~v~~~~-~~~THLI~~~~~rT~K~l~A--~-~~g~~IVs~~Wl~~c~~~~ 87 (219)
T 3sqd_A 14 ELTPFVLF--TGFEPVQVQQYIKKLYILGGEVAESA-QKCTHLIASKVTRTVKFLTA--I-SVVKHIVTPEWLEECFRCQ 87 (219)
T ss_dssp GGCCEEEE--CSCCHHHHHHHHHHHHHTTCEECSSG-GGCSEEECSSCCCCHHHHHH--T-TTCSEEECHHHHHHHHHHT
T ss_pred CCCeEEEE--eCCChHHHHHHHHHHHHCCCEEeCCC-CCceEEEECCCCCCHHHHHH--H-HcCCCEecHHHHHHHHHcC
Confidence 56677777 77876667788999999999999886 78999999766554454442 2 2236899999999999999
Q ss_pred cccCccccccc
Q 009303 99 EKVSEDLYRIK 109 (538)
Q Consensus 99 ~lv~e~~y~l~ 109 (538)
+.|||+.|.+.
T Consensus 88 ~~l~e~~y~l~ 98 (219)
T 3sqd_A 88 KFIDEQNYILR 98 (219)
T ss_dssp SCCCSGGGBCC
T ss_pred CCCChHhccCC
Confidence 99999999985
No 36
>3al2_A DNA topoisomerase 2-binding protein 1; BRCT domain, protein binding, DNA binding protein; HET: DNA MSE; 2.00A {Homo sapiens} PDB: 3al3_A*
Probab=98.46 E-value=2e-07 Score=91.58 Aligned_cols=85 Identities=16% Similarity=0.134 Sum_probs=65.8
Q ss_pred cCcEEEEecCCCChhHHHHHHHHHHhcCCEEEe--ecCCCccEEEEcCChHHHHHHHHhhhcccCccccccchHHHHHhc
Q 009303 20 AGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEE--KLSKKVTHVLAMDLEALLQQVSKQHLARFKGSVIRYQWLEDSLRL 97 (538)
Q Consensus 20 ~g~~iy~~~~~~g~~R~~~l~~~~~~~G~~V~~--~ls~~VTHVV~~~~~~~~~~l~~~~~~~~~~~lV~~~Wl~ecik~ 97 (538)
++.+|.| +++......-+.+.+++.||.|++ .+++.+||||+....+..+.+..- .. ...||+.+||++|+++
T Consensus 8 ~~~~~~~--Sg~~~~~~~~l~~~i~~LGg~~~~~~~~~~~~THlV~~~~~RT~K~l~ai--a~-G~wIvs~~wl~~s~~~ 82 (235)
T 3al2_A 8 KQYIFQL--SSLNPQERIDYCHLIEKLGGLVIEKQCFDPTCTHIVVGHPLRNEKYLASV--AA-GKWVLHRSYLEACRTA 82 (235)
T ss_dssp CCCEEEE--ESCCHHHHHHHHHHHHHTTCEECCSSSCCTTCCEEEESSCCCSHHHHHHH--HT-TCEEECTHHHHHHHHH
T ss_pred CCEEEEE--cCCCHHHHHHHHHHHHHcCCEEeccCCCCCCCcEEEECCCCCCHHHHHHH--Hc-CCcCccHHHHHHHHHc
Confidence 3445544 567655556688999999999986 578899999998765555555432 12 3689999999999999
Q ss_pred CcccCccccccc
Q 009303 98 GEKVSEDLYRIK 109 (538)
Q Consensus 98 g~lv~e~~y~l~ 109 (538)
|+.|||+.|.+.
T Consensus 83 g~~l~E~~ye~~ 94 (235)
T 3al2_A 83 GHFVQEEDYEWG 94 (235)
T ss_dssp TSCCCSGGGBTT
T ss_pred CCCCChhceeec
Confidence 999999999885
No 37
>2etx_A Mediator of DNA damage checkpoint protein 1; tandem BRCT domains histone gamma-H2AX, cell cycle; 1.33A {Homo sapiens} PDB: 2azm_A* 3k05_A* 2ado_A
Probab=98.39 E-value=2.4e-07 Score=89.12 Aligned_cols=84 Identities=15% Similarity=0.326 Sum_probs=61.1
Q ss_pred CCCcCcEEEEecCCCChhHHHHHHHHHHhcCCEEEeecCCCccEEEEcCChHHHHHHHHhhhcccCccccccchHHHHHh
Q 009303 17 GIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLEALLQQVSKQHLARFKGSVIRYQWLEDSLR 96 (538)
Q Consensus 17 ~~F~g~~iy~~~~~~g~~R~~~l~~~~~~~G~~V~~~ls~~VTHVV~~~~~~~~~~l~~~~~~~~~~~lV~~~Wl~ecik 96 (538)
....+++|.| +|+.... +++.++.+||.+++.+++ +||+|+....+..+.+..- .. ...||+.+||.+|++
T Consensus 8 ~~~~~~~v~~--sG~~~~~---~~~~i~~lGg~~~~~~~~-~THlI~~~~~rt~K~l~a~--~~-g~~IV~~~Wl~~~~~ 78 (209)
T 2etx_A 8 QESTAPKVLF--TGVVDAR---GERAVLALGGSLAGSAAE-ASHLVTDRIRRTVKFLCAL--GR-GIPILSLDWLHQSRK 78 (209)
T ss_dssp ----CCEEEE--CSSCCHH---HHHHHHHTTCEECSSTTT-CSEEECSSCCCSHHHHHHH--HH-TCCEECTHHHHHHHH
T ss_pred ccCCCcEEEE--eCCCcHH---HHHHHHHCCCEEeCCCCC-ceEEEECCCCCCHHHHHHH--hc-CCccccHHHHHHHHH
Confidence 3455677776 5554332 378999999999999885 9999997654444444332 12 367999999999999
Q ss_pred cCcccCccccccc
Q 009303 97 LGEKVSEDLYRIK 109 (538)
Q Consensus 97 ~g~lv~e~~y~l~ 109 (538)
+|+.|||+.|.+.
T Consensus 79 ~~~~l~e~~y~~~ 91 (209)
T 2etx_A 79 AGFFLPPDEYVVT 91 (209)
T ss_dssp HTSCCCSGGGBCC
T ss_pred cCCCCChhhcccc
Confidence 9999999999884
No 38
>3olc_X DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, RAD9, DNA binding protein; HET: DNA; 2.40A {Homo sapiens} PDB: 2xnk_A* 2xnh_A*
Probab=98.29 E-value=8e-07 Score=90.25 Aligned_cols=88 Identities=14% Similarity=0.225 Sum_probs=67.9
Q ss_pred CCCCCCCcCcEEEEecCCCChhHHHHHHHHHHhcCCEEEeecCCCccEEEEcCChHHHHHHHHhhhcccCccccccchHH
Q 009303 13 LDSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLEALLQQVSKQHLARFKGSVIRYQWLE 92 (538)
Q Consensus 13 ~~~~~~F~g~~iy~~~~~~g~~R~~~l~~~~~~~G~~V~~~ls~~VTHVV~~~~~~~~~~l~~~~~~~~~~~lV~~~Wl~ 92 (538)
+.....|+|++|.+ .++....+.-+.+++..+||++...+++++||||+.+... .++.... .....||+.+||.
T Consensus 100 P~y~~~l~g~~~~~--tG~~~~~r~~l~~~i~~~GG~v~~~~t~~tTHLI~~~~~t-~Ky~~A~---~~gi~IV~~~Wl~ 173 (298)
T 3olc_X 100 PVYNMVMSDVTISC--TSLEKEKREEVHKYVQMMGGRVYRDLNVSVTHLIAGEVGS-KKYLVAA---NLKKPILLPSWIK 173 (298)
T ss_dssp CBCCCTTTTCEEEE--ESCCHHHHHHHHHHHHHTTCEECSSCCTTCCEEEESSSCS-HHHHHHH---HTTCCEECHHHHH
T ss_pred cccccccCCeEEEe--CCCcHHhHHHHHHHHHHCCCEEecCcCCCeeEEEEeCCCC-hHHHHHH---HCCCeEeeHHHHH
Confidence 34467999999999 5665556778889999999999999999999999965421 1222211 1247899999999
Q ss_pred HHHhcCcccCcccc
Q 009303 93 DSLRLGEKVSEDLY 106 (538)
Q Consensus 93 ecik~g~lv~e~~y 106 (538)
+||+.|+.++..+|
T Consensus 174 ~c~~~~~~~~~~~~ 187 (298)
T 3olc_X 174 TLWEKSQEKKITRY 187 (298)
T ss_dssp HHHHHHHTTCCSSG
T ss_pred HHHHcCCcCCcccc
Confidence 99999998876554
No 39
>1l0b_A BRCA1; TANDEM-BRCT, three-helix bundle, unknown function; 2.30A {Rattus norvegicus} SCOP: c.15.1.3 c.15.1.3
Probab=98.21 E-value=1.6e-06 Score=84.02 Aligned_cols=93 Identities=17% Similarity=0.290 Sum_probs=60.5
Q ss_pred CCCCcCcEEEEecCCCChhHHHHHHHHHHhcCCEEEeecCC-----CccEEEEcCChHHHHHHHHhhh-cccCccccccc
Q 009303 16 NGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSK-----KVTHVLAMDLEALLQQVSKQHL-ARFKGSVIRYQ 89 (538)
Q Consensus 16 ~~~F~g~~iy~~~~~~g~~R~~~l~~~~~~~G~~V~~~ls~-----~VTHVV~~~~~~~~~~l~~~~~-~~~~~~lV~~~ 89 (538)
..+|.|+.|||........ ...|+++++.+||+|+..+.. ..||+|+.......+....+.+ ...+.++|+.+
T Consensus 115 ~~lF~g~~~~~~~~~~~~~-~~~l~~li~~~GG~v~~~~~~~~~~~~~~~~vvv~~~~~~~~~~~~~l~~~~~i~iVs~~ 193 (229)
T 1l0b_A 115 EKLFEGLQIYCCEPFTNMP-KDELERMLQLCGASVVKELPLLTRDTGAHPIVLVQPSAWTEDNDCPDIGQLCKGRLVMWD 193 (229)
T ss_dssp --CCTTCEEEECSCCSSSC-HHHHHHHHHHTTCEEECSSSCGGGCCSSCCEEEEC-------------------CEEETH
T ss_pred hhhhcCceEEEEecCCCCC-HHHHHHHHHHCCCEEeCCcccccccCCCceEEEEcCCccchhhhHHHHHHHcCCeEeehh
Confidence 4799999999976544334 456679999999999998854 3688555332110000000001 12247899999
Q ss_pred hHHHHHhcCcccCccccccc
Q 009303 90 WLEDSLRLGEKVSEDLYRIK 109 (538)
Q Consensus 90 Wl~ecik~g~lv~e~~y~l~ 109 (538)
||.|||..+++++++.|.+.
T Consensus 194 WlldsI~~~~~~~~~~Y~l~ 213 (229)
T 1l0b_A 194 WVLDSISVYRCRDLDAYLVQ 213 (229)
T ss_dssp HHHHHHHTTSCCCGGGGBCC
T ss_pred HHHHHHhcCCcCCccceEcc
Confidence 99999999999999999885
No 40
>2vxb_A DNA repair protein RHP9; BRCT, nucleus, cell cycle, DNA damage, DNA replication inhibitor, phosphoprotein, checkpoint signalling; HET: DNA; 2.3A {Schizosaccharomyces pombe} PDB: 2vxc_A*
Probab=98.20 E-value=1.6e-06 Score=85.32 Aligned_cols=90 Identities=11% Similarity=0.127 Sum_probs=66.8
Q ss_pred CCcCcEEEEecCC-CChhHHHHHHHHHHhcCCEEEee-----c--CC-------------------CccEEEEcCChHHH
Q 009303 18 IFAGMRVFLVEKG-VQNRRLQIWRQKLVQMGATVEEK-----L--SK-------------------KVTHVLAMDLEALL 70 (538)
Q Consensus 18 ~F~g~~iy~~~~~-~g~~R~~~l~~~~~~~G~~V~~~-----l--s~-------------------~VTHVV~~~~~~~~ 70 (538)
+|.|++++|.... ....+..-+++++.++||+|.+. + .. +.||||+....+..
T Consensus 2 lF~g~~F~ls~~~~~~~~~k~~L~~~I~~~GG~v~~~g~~~lf~~~~~~~~~~~~~~k~~~~~~~~~~t~lia~~~~rt~ 81 (241)
T 2vxb_A 2 IFDDCVFAFSGPVHEDAYDRSALETVVQDHGGLVLDTGLRPLFNDPFKSKQKKLRHLKPQKRSKSWNQAFVVSDTFSRKV 81 (241)
T ss_dssp TTTTEEEEECCCSSTTSSCHHHHHHHHHHTTCEECTTCSGGGBCCSCC----CCCSCCBCGGGGGCSEEEEECSSCCCCH
T ss_pred CCCCcEEEEecCCCCchhhHHHHHHHHHHCCCEEecCcchhhccCccccccccccccccccccccccceEEEcCCCCCcH
Confidence 7999999986541 22344566789999999999886 2 11 35999997654444
Q ss_pred HHHHHhhhcccCccccccchHHHHHhcCcccCcccccccc
Q 009303 71 QQVSKQHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKL 110 (538)
Q Consensus 71 ~~l~~~~~~~~~~~lV~~~Wl~ecik~g~lv~e~~y~l~~ 110 (538)
+.+.... ....||+.+||.+|+++|+++|++.|.|..
T Consensus 82 K~~~ala---~gipiV~~~Wi~dc~~~~~~~~~~~ylL~~ 118 (241)
T 2vxb_A 82 KYLEALA---FNIPCVHPQFIKQCLKMNRVVDFSPYLLAS 118 (241)
T ss_dssp HHHHHHH---HTCCEECTHHHHHHHHHTSCCCSGGGBBEE
T ss_pred HHHHHHH---cCCCEecHHHHHHHHHcCCcCChhhccCCC
Confidence 4444321 136799999999999999999999999963
No 41
>1z56_C DNA ligase IV; DNA repair, BRCT, NHEJ, XRCC4, DNA ligase, coiled-coil; HET: DNA; 3.92A {Saccharomyces cerevisiae}
Probab=98.15 E-value=1.8e-07 Score=93.03 Aligned_cols=90 Identities=12% Similarity=0.143 Sum_probs=61.3
Q ss_pred CCCCCcCcEEEEecCCC-----ChhHHHHHHHHHHhcCCEEEeecCCC-----ccEEEEcCChHHHHHHHHhhhcccCcc
Q 009303 15 SNGIFAGMRVFLVEKGV-----QNRRLQIWRQKLVQMGATVEEKLSKK-----VTHVLAMDLEALLQQVSKQHLARFKGS 84 (538)
Q Consensus 15 ~~~~F~g~~iy~~~~~~-----g~~R~~~l~~~~~~~G~~V~~~ls~~-----VTHVV~~~~~~~~~~l~~~~~~~~~~~ 84 (538)
.+.+|+|+++||+.... ....++-|.++++++||+++...... .||||++..+.. ..........
T Consensus 2 ~s~lF~g~~f~v~~~~~~p~~~~~~~~~~L~~li~~~GG~~~~~~~~~t~~~~~~~iI~~~~t~k-----~~~~~~~~~~ 76 (264)
T 1z56_C 2 ISNIFAGLLFYVLSDYVTEDTGIRITRAELEKTIVEHGGKLIYNVILKRHSIGDVRLISCKTTTE-----CKALIDRGYD 76 (264)
T ss_dssp -CCCCCTTCCCCSEEEECCCCCSSSSCCCTHHHHHHHHTTSCCCSSCCCCCSSCCEEEECSCCGG-----GGGGTTTTCC
T ss_pred ccccCCCcEEEEEcCCCCccccccCCHHHHHHHHHHcCCEEeecCCCCccCccceEEEecCCcHH-----HHHHHhCCCC
Confidence 35799999999863211 11124456799999999887644322 478888754321 1111122268
Q ss_pred ccccchHHHHHhcCcccCccccccc
Q 009303 85 VIRYQWLEDSLRLGEKVSEDLYRIK 109 (538)
Q Consensus 85 lV~~~Wl~ecik~g~lv~e~~y~l~ 109 (538)
||+++||.||+++|++||++.|.+.
T Consensus 77 vV~p~Wv~dci~~~~llp~~~y~~~ 101 (264)
T 1z56_C 77 ILHPNWVLDCIAYKRLILIEPNYCF 101 (264)
T ss_dssp CBCSSTTHHHHSSCSCCCCCSCBSC
T ss_pred EEechHHHHHhhcCCCCCCChHHhh
Confidence 9999999999999999999998775
No 42
>1kzy_C Tumor suppressor P53-binding protein 1; tandem-BRCT and linker complexed with non-BRCT protein, three-helix bundle, parallel beta sheet; 2.50A {Homo sapiens} SCOP: c.15.1.4 c.15.1.4 PDB: 1gzh_B
Probab=98.14 E-value=2.1e-06 Score=85.48 Aligned_cols=88 Identities=20% Similarity=0.331 Sum_probs=65.3
Q ss_pred CCCCCcCcEEEEecCCCChhHHHHHHHHHHhcCCEEEeecC---------CCccEEEEcCCh-HHHHHHHHhhhcccCcc
Q 009303 15 SNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLS---------KKVTHVLAMDLE-ALLQQVSKQHLARFKGS 84 (538)
Q Consensus 15 ~~~~F~g~~iy~~~~~~g~~R~~~l~~~~~~~G~~V~~~ls---------~~VTHVV~~~~~-~~~~~l~~~~~~~~~~~ 84 (538)
...+|+|++||+.+...+ .+..++...++.+||.|+..+. .+.+|||+.+.+ .. ...+. ....+++
T Consensus 152 ~~~LF~G~~I~i~~~~~~-~~~~~~~~Il~~~Ga~vv~~~~s~~~~~d~~~~~~~viv~d~~~~~-~~~~~--a~~~~i~ 227 (259)
T 1kzy_C 152 RENPFQNLKVLLVSDQQQ-NFLELWSEILMTGGAASVKQHHSSAHNKDIALGVFDVVVTDPSCPA-SVLKC--AEALQLP 227 (259)
T ss_dssp CCCTTTTCEEEEEESCTT-TTHHHHHHHHHHTTCSEEEEEESSSSCCCSCGGGCSEEEECTTCCH-HHHHH--HHHHTCC
T ss_pred cCCCCCCeEEEEecCCCC-CHHHHHHHHHHhcCCEEEeccccchhhhhccCCCCeEEEECCCChH-HHHHH--HHhcCCC
Confidence 368999999999887544 4568899999999999998773 257888875432 11 11111 1122478
Q ss_pred ccccchHHHHHhcCcccCcccc
Q 009303 85 VIRYQWLEDSLRLGEKVSEDLY 106 (538)
Q Consensus 85 lV~~~Wl~ecik~g~lv~e~~y 106 (538)
||+.+||.+||..|+++|++.|
T Consensus 228 iVs~EWv~~sI~~~~ll~~~~h 249 (259)
T 1kzy_C 228 VVSQEWVIQCLIVGERIGFKQH 249 (259)
T ss_dssp EECHHHHHHHHHHTSCCCTTSS
T ss_pred EecHHHHHHHHHhCCcCCCCcC
Confidence 9999999999999999998765
No 43
>1t15_A Breast cancer type 1 susceptibility protein; protein-peptide complex, antitumor protein; HET: SEP; 1.85A {Homo sapiens} SCOP: c.15.1.3 c.15.1.3 PDB: 1jnx_X* 1t29_A* 1t2v_A* 1y98_A* 3coj_X* 3k0h_A* 3k0k_A* 3pxe_A* 3pxb_A 3pxc_X 1t2u_A 1n5o_X 3pxa_A 3k15_A* 3k16_A* 3pxd_A 2ing_X 1oqa_A
Probab=98.12 E-value=1.6e-06 Score=82.84 Aligned_cols=94 Identities=19% Similarity=0.237 Sum_probs=63.7
Q ss_pred CCCCCcCcEEEEecCCCChhHHHHHHHHHHhcCCEEEeecCC-----CccEEEEcCChHHHHHHHHhhh-cccCcccccc
Q 009303 15 SNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSK-----KVTHVLAMDLEALLQQVSKQHL-ARFKGSVIRY 88 (538)
Q Consensus 15 ~~~~F~g~~iy~~~~~~g~~R~~~l~~~~~~~G~~V~~~ls~-----~VTHVV~~~~~~~~~~l~~~~~-~~~~~~lV~~ 88 (538)
...+|.|++|||...-.... +..|+.+++.+||+|++.+.. +++|||+.+............+ ...+.++|+.
T Consensus 112 ~~~lF~g~~~~~~~~~~~~~-~~~l~~li~~~GG~v~~~~~~~~~~~~~~~ivi~~~~~~~~~~~~~~~a~~~~~~iV~~ 190 (214)
T 1t15_A 112 DRKIFRGLEICCYGPFTNMP-TDQLEWMVQLCGASVVKELSSFTLGTGVHPIVVVQPDAWTEDNGFHAIGQMCEAPVVTR 190 (214)
T ss_dssp TSCTTTTCEEEECSCCSSSC-HHHHHHHHHHTTCEECCSGGGCCCSTTCCEEEEECGGGCSSCGGGGSSTTTCSSCEEEH
T ss_pred CCcccCCCEEEEEecCCCCC-HHHHHHHHHHCCCEEecCccccccCCCCccEEEECCCcccchhhHHHHHHhcCCcEEec
Confidence 45799999999976543333 455689999999999998854 2234655332110000000101 1224789999
Q ss_pred chHHHHHhcCcccCccccccc
Q 009303 89 QWLEDSLRLGEKVSEDLYRIK 109 (538)
Q Consensus 89 ~Wl~ecik~g~lv~e~~y~l~ 109 (538)
+||.||+..++++|++.|.+.
T Consensus 191 ~Wi~dsi~~~~~l~~~~Y~l~ 211 (214)
T 1t15_A 191 EWVLDSVALYQCQELDTYLIP 211 (214)
T ss_dssp HHHHHHHHHTSCCCSGGGBCC
T ss_pred cHHHHhHhhcCcCCCcceeec
Confidence 999999999999999999774
No 44
>3l41_A BRCT-containing protein 1; BRC1, BRCT domain, tandem BRCT repeat, phosphoserine binding domain, DNA repair, cell division, mitosis; HET: SEP; 1.45A {Schizosaccharomyces pombe} PDB: 3l40_A*
Probab=98.06 E-value=1.1e-06 Score=85.52 Aligned_cols=66 Identities=20% Similarity=0.333 Sum_probs=54.3
Q ss_pred HHHHHhcCCEEEeecCCCccEEEEcCChHHHHHHHHhhhcccCccccccchHHHHHhcCcccCccccccc
Q 009303 40 RQKLVQMGATVEEKLSKKVTHVLAMDLEALLQQVSKQHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIK 109 (538)
Q Consensus 40 ~~~~~~~G~~V~~~ls~~VTHVV~~~~~~~~~~l~~~~~~~~~~~lV~~~Wl~ecik~g~lv~e~~y~l~ 109 (538)
.+.++..||.|++..+ .+||+|+....+..+.+..- .. ...||+.+||.+|+++|+.+||+.|.+.
T Consensus 22 ~~~i~~lGg~v~~~~~-~~THlV~~~~~RT~K~l~Ai--a~-g~~IVs~~Wl~~~~~~~~~l~e~~y~l~ 87 (220)
T 3l41_A 22 IDNLKKLDMSITSNPS-KCTHLIAPRILRTSKFLCSI--PY-GPCVVTMDWINSCLKTHEIVDEEPYLLN 87 (220)
T ss_dssp CGGGGGGTEEECSCTT-TCSEEECSSCCCBHHHHHHG--GG-CCEEECHHHHHHHHHHTSCCCSGGGBCC
T ss_pred cchHhhcceeeccCch-hhhhhhhhhHhhhcceeecC--CC-CCeEEEhHHHHhhhhhhhccccCccccC
Confidence 6889999999999875 59999997765555555432 22 3689999999999999999999999985
No 45
>3u3z_A Microcephalin; DNA repair, cell cycle regulation, cell cycle; HET: SEP PTR; 1.50A {Homo sapiens} PDB: 3szm_A* 3t1n_A* 3sht_A 3shv_A*
Probab=97.99 E-value=3e-06 Score=80.97 Aligned_cols=82 Identities=12% Similarity=0.182 Sum_probs=61.2
Q ss_pred CCCCCcCcEEEEecCCCChhHHHHHHHHHHhcCCEEEeecCCCccEEEEcCChHHHHHHHHhhhcccCccccccchHHHH
Q 009303 15 SNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLEALLQQVSKQHLARFKGSVIRYQWLEDS 94 (538)
Q Consensus 15 ~~~~F~g~~iy~~~~~~g~~R~~~l~~~~~~~G~~V~~~ls~~VTHVV~~~~~~~~~~l~~~~~~~~~~~lV~~~Wl~ec 94 (538)
...+|.|+.+|++....... +..|+.+++.+||+|+..+.. +||++.+.... ...+..+|+++||.||
T Consensus 116 ~~~LF~g~~~~~v~~~~~~~-~~~L~~lI~~~GG~v~~~~~~--~~iiI~~~~~~---------~~~~~~~V~p~Wi~Ds 183 (199)
T 3u3z_A 116 RGTLFADQPVMFVSPASSPP-VAKLCELVHLCGGRVSQVPRQ--ASIVIGPYSGK---------KKATVKYLSEKWVLDS 183 (199)
T ss_dssp CCCTTTTSCCEEECTTCSSC-HHHHHHHHHHTTCCBCSSGGG--CSEEESCCCSC---------CCTTCEEECHHHHHHH
T ss_pred cchhhCCCeEEEECCCCCCC-HHHHHHHHHHcCCEEeccCCC--CEEEEeCCchh---------ccCCCcEEChhHHHHH
Confidence 45899999766665544434 367899999999999998852 44555443221 1224679999999999
Q ss_pred HhcCcccCcccccc
Q 009303 95 LRLGEKVSEDLYRI 108 (538)
Q Consensus 95 ik~g~lv~e~~y~l 108 (538)
|.+++++|++.|.+
T Consensus 184 I~~~~llp~~~Y~~ 197 (199)
T 3u3z_A 184 ITQHKVCAPENYLL 197 (199)
T ss_dssp HHHTSCCCGGGGBC
T ss_pred HHcCCcCChHhccC
Confidence 99999999999976
No 46
>2vxb_A DNA repair protein RHP9; BRCT, nucleus, cell cycle, DNA damage, DNA replication inhibitor, phosphoprotein, checkpoint signalling; HET: DNA; 2.3A {Schizosaccharomyces pombe} PDB: 2vxc_A*
Probab=97.91 E-value=9.5e-06 Score=79.84 Aligned_cols=80 Identities=11% Similarity=0.226 Sum_probs=60.8
Q ss_pred CCCCcCcEEEEecCCCChh-----------HHHHHHHHHHhcCCEE--EeecCCCccEEEEcCChHHHHHHHHhhhcccC
Q 009303 16 NGIFAGMRVFLVEKGVQNR-----------RLQIWRQKLVQMGATV--EEKLSKKVTHVLAMDLEALLQQVSKQHLARFK 82 (538)
Q Consensus 16 ~~~F~g~~iy~~~~~~g~~-----------R~~~l~~~~~~~G~~V--~~~ls~~VTHVV~~~~~~~~~~l~~~~~~~~~ 82 (538)
..+|+|++|||+...-... .++.+...++.+||.+ +..+...++|+|+.+.... ....+
T Consensus 149 ~~Lf~g~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~Ga~~~~v~~~~~~~~d~v~~~~~~~--------~~~~~ 220 (241)
T 2vxb_A 149 KGPLFGKKILFIIPEAKSWQKKIENTEQGQKALAHVYHALALGADVEIRPNVAHLECDLILTMDGNI--------VDETN 220 (241)
T ss_dssp CCTTTTCEEEECCCC------------CHHHHHHHHHHHHHTTCEEECCSCCSSCCCSEEECSSSCC--------CSSCS
T ss_pred CcCCCCcEEEEEeCCCcccccccccccccchHHHHHHHHHHcCCceecccccccCCccEEEECCccc--------cccCC
Confidence 5899999999986533211 2588999999999999 5555667899999754311 12335
Q ss_pred ccccccchHHHHHhcCcccCc
Q 009303 83 GSVIRYQWLEDSLRLGEKVSE 103 (538)
Q Consensus 83 ~~lV~~~Wl~ecik~g~lv~e 103 (538)
++||+.+||.+||..|+++|+
T Consensus 221 ~~iV~~eWv~~~i~~g~~l~~ 241 (241)
T 2vxb_A 221 CPVVDPEWIVECLISQSDIST 241 (241)
T ss_dssp SCEECHHHHHHHHHHTSCTTC
T ss_pred CCEecHHHHHHHHHhceecCC
Confidence 899999999999999999974
No 47
>2etx_A Mediator of DNA damage checkpoint protein 1; tandem BRCT domains histone gamma-H2AX, cell cycle; 1.33A {Homo sapiens} PDB: 2azm_A* 3k05_A* 2ado_A
Probab=97.70 E-value=4.5e-05 Score=73.15 Aligned_cols=89 Identities=9% Similarity=0.088 Sum_probs=63.1
Q ss_pred CCCCcCcEEEEecCCCChhHHHHHHHHHHhcCCEEEeecCCCc--cEEEEcCChHHHHHHHHhhhcccCccccccchHHH
Q 009303 16 NGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKV--THVLAMDLEALLQQVSKQHLARFKGSVIRYQWLED 93 (538)
Q Consensus 16 ~~~F~g~~iy~~~~~~g~~R~~~l~~~~~~~G~~V~~~ls~~V--THVV~~~~~~~~~~l~~~~~~~~~~~lV~~~Wl~e 93 (538)
..+|.|++|||.+...+ . ...++.+++.+||+|...+...+ +|||+........+ . .....+..+|+.+||.+
T Consensus 113 ~~lF~g~~~~~~~~~~~-~-~~~l~~li~~~GG~v~~~~~~~~~~~~ivI~~~~d~~~~-~--~~~~~~i~vvs~eWi~~ 187 (209)
T 2etx_A 113 RRLLEGYEIYVTPGVQP-P-PPQMGEIISCCGGTYLPSMPRSYKPQRVVITCPQDFPHC-S--IPLRVGLPLLSPEFLLT 187 (209)
T ss_dssp SCTTTTCEEEECTTCSS-C-HHHHHHHHHHTTCEECSSCCCSCCTTEEEECCGGGGGGC-H--HHHHHTCCEECTHHHHH
T ss_pred CCCcCCcEEEEeCCCCC-C-HHHHHHHHHHCCCEEECCCCCCCCCceEEEECcccHHHH-H--HHHHCCCeEEcHHHHHH
Confidence 37999999999765433 3 35677999999999999886543 78887432211000 0 01122468999999999
Q ss_pred HHhcCcccCcccccccc
Q 009303 94 SLRLGEKVSEDLYRIKL 110 (538)
Q Consensus 94 cik~g~lv~e~~y~l~~ 110 (538)
||...++ |.+.|.|.-
T Consensus 188 sI~~q~l-d~e~y~l~~ 203 (209)
T 2etx_A 188 GVLKQEA-KPEAFVLSP 203 (209)
T ss_dssp HHHHTCC-CGGGGBCCT
T ss_pred HHHhccc-ChHHheecC
Confidence 9999775 999999863
No 48
>2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain, helix turn helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.2.7
Probab=97.61 E-value=4.4e-05 Score=64.52 Aligned_cols=57 Identities=23% Similarity=0.263 Sum_probs=46.7
Q ss_pred chhhhcCCCCCCHHHHHHHHHHHH-hCCcchhHHHHhhchhHHHHHHhhccCCCHHHHHHHHHhCCCCHHHH
Q 009303 252 SADQVKGLPGIGKSMQDHIQEIVT-TGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL 322 (538)
Q Consensus 252 ~~~~l~~lpgIG~~ia~kI~Eil~-tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~~GirtledL 322 (538)
+.++|..|||||+.+|.+|.+..+ +|.+..+++ |.+|+|||++++++|++.|+ ++++
T Consensus 38 ~~~~L~~ipGIG~~~A~~Il~~r~~~g~f~s~ed------------L~~v~Gig~k~~~~l~~~g~--ld~~ 95 (98)
T 2edu_A 38 SARDLRSLQRIGPKKAQLIVGWRELHGPFSQVED------------LERVEGITGKQMESFLKANI--LGLA 95 (98)
T ss_dssp CHHHHHHSTTCCHHHHHHHHHHHHHHCCCSSGGG------------GGGSTTCCHHHHHHHHHHHH--HHHH
T ss_pred CHHHHHHCCCCCHHHHHHHHHHHHhcCCcCCHHH------------HHhCCCCCHHHHHHHHHCcC--hhcc
Confidence 356789999999999999999986 488755555 45899999999999999885 4444
No 49
>2nte_A BARD-1, BRCA1-associated ring domain protein 1; BRCT, ring finger, zinc-binding protein, ubiquitin LI antitumor protein; 1.90A {Homo sapiens} PDB: 3fa2_A 2r1z_A
Probab=97.51 E-value=5.8e-05 Score=72.16 Aligned_cols=85 Identities=12% Similarity=0.053 Sum_probs=57.7
Q ss_pred CCCCcCcEEEEecCCCChhHHHHHHHHHHhcCCEEEeecC-----------------------CCccEEEEcCChHHHHH
Q 009303 16 NGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLS-----------------------KKVTHVLAMDLEALLQQ 72 (538)
Q Consensus 16 ~~~F~g~~iy~~~~~~g~~R~~~l~~~~~~~G~~V~~~ls-----------------------~~VTHVV~~~~~~~~~~ 72 (538)
..+|.|+.|||...-.. ..+..|+++++.+||+|+.... ...||.|+...... +
T Consensus 102 ~~lF~g~~~~l~~~~~~-~~~~~l~~lI~~~GG~v~~~~p~~~~~~~~~~~~v~~~~~~~~~~~~~t~~iv~~~~~~--~ 178 (210)
T 2nte_A 102 PKLFDGCYFYLWGTFKH-HPKDNLIKLVTAGGGQILSRKPKPDSDVTQTINTVAYHARPDSDQRFCTQYIIYEDLCN--Y 178 (210)
T ss_dssp CCTTTTCEEEECSCCSS-SCHHHHHHHHHHTTCEEESSCCCGGGCGGGSSCCCCTTSCTTCGGGTCCEEEEECSCSS--C
T ss_pred ccccCceEEEEeccCCC-CCHHHHHHHHHHCCCEEEecCCCCccccccccceeeeccCCCcccccceEEEEeccccc--c
Confidence 57999999999764333 3356788999999999996321 23577776432110 0
Q ss_pred HHHhhhcccCccccccchHHHHHhcCcccCcc
Q 009303 73 VSKQHLARFKGSVIRYQWLEDSLRLGEKVSED 104 (538)
Q Consensus 73 l~~~~~~~~~~~lV~~~Wl~ecik~g~lv~e~ 104 (538)
...+....+..+|+.+||.|||..++++|.+
T Consensus 179 -~~~~~~~~~v~~V~~~Wl~dcI~~~~llp~~ 209 (210)
T 2nte_A 179 -HPERVRQGKVWKAPSSWFIDCVMSFELLPLD 209 (210)
T ss_dssp -CCSCSEETTEEEEEHHHHHHHHHHTSCCCSC
T ss_pred -CHHHHhccCcccccHHHHHHHHHhCeeccCC
Confidence 0001112235799999999999999999975
No 50
>2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} SCOP: a.60.2.7
Probab=97.22 E-value=8.5e-05 Score=59.50 Aligned_cols=46 Identities=33% Similarity=0.464 Sum_probs=37.0
Q ss_pred hhhhcCCCCCCHHHHHHHHHHHHhCCcchhHHHHhhchhHHHHHHhhccCCCHHHHHHHHH
Q 009303 253 ADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYE 313 (538)
Q Consensus 253 ~~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~ 313 (538)
.++|..|||||+..|.+|.+.. +...++.|.+|+|+|++++++++.
T Consensus 26 ~~~L~~ipGIG~~~A~~Il~~r---------------~~~s~~eL~~v~Gig~k~~~~i~~ 71 (75)
T 2duy_A 26 LEELMALPGIGPVLARRIVEGR---------------PYARVEDLLKVKGIGPATLERLRP 71 (75)
T ss_dssp HHHHTTSTTCCHHHHHHHHHTC---------------CCSSGGGGGGSTTCCHHHHHHHGG
T ss_pred HHHHHhCCCCCHHHHHHHHHHc---------------ccCCHHHHHhCCCCCHHHHHHHHH
Confidence 4679999999999999999864 223344466999999999999874
No 51
>3arc_U Photosystem II 12 kDa extrinsic protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_U* 2axt_U* 3bz2_U* 3kzi_U* 3prq_U* 3prr_U* 3a0b_U* 3a0h_U*
Probab=97.05 E-value=0.00055 Score=57.72 Aligned_cols=47 Identities=15% Similarity=0.153 Sum_probs=39.6
Q ss_pred chhhhcCCCCCCHHHHHHHHHHHHhCCcchhHHHHhhchhHHHHHHhhccCCCHHHHHHHHH
Q 009303 252 SADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYE 313 (538)
Q Consensus 252 ~~~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~ 313 (538)
+.++|..|||||+.+|+.|.+ .|.+..+++| .+|+|+|+++..++-.
T Consensus 24 s~~eL~~lpGIG~~~A~~IV~---~GpF~s~edL------------~~V~Gig~~~~e~l~~ 70 (97)
T 3arc_U 24 NIAAFIQYRGLYPTLAKLIVK---NAPYESVEDV------------LNIPGLTERQKQILRE 70 (97)
T ss_dssp CGGGGGGSTTCTTHHHHHHHH---HCCCSSGGGG------------GGCTTCCHHHHHHHHH
T ss_pred CHHHHhHCCCCCHHHHHHHHH---cCCCCCHHHH------------HhccCCCHHHHHHHHH
Confidence 458999999999999999988 6776666664 4899999999998855
No 52
>1s5l_U Photosystem II 12 kDa extrinsic protein; photosynthesis, oxygen-evolving, tetra- manganese, membrane; HET: CL1 PHO HEM PL9 LMT BCR; 3.50A {Thermosynechococcus elongatus}
Probab=96.97 E-value=0.00073 Score=59.85 Aligned_cols=46 Identities=13% Similarity=0.122 Sum_probs=38.6
Q ss_pred chhhhcCCCCCCHHHHHHHHHHHHhCCcchhHHHHhhchhHHHHHHhhccCCCHHHHHHHH
Q 009303 252 SADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY 312 (538)
Q Consensus 252 ~~~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly 312 (538)
+.++++.|||||+..|++|. ++|-+..+|++ .+|+|||+|+.+.+-
T Consensus 61 ~~~eL~~LpGiGp~~A~~II---~~GpF~svedL------------~~V~GIg~k~~e~l~ 106 (134)
T 1s5l_U 61 NIAAFIQYRGLYPTLAKLIV---KNAPYESVEDV------------LNIPGLTERQKQILR 106 (134)
T ss_dssp CGGGGGGSTTCTHHHHHHHH---HTCCCSSGGGG------------GGCTTCCHHHHHHHH
T ss_pred CHHHHHHCCCCCHHHHHHHH---HcCCCCCHHHH------------HhCCCCCHHHHHHHH
Confidence 45789999999999999998 67888777775 389999999877764
No 53
>3al2_A DNA topoisomerase 2-binding protein 1; BRCT domain, protein binding, DNA binding protein; HET: DNA MSE; 2.00A {Homo sapiens} PDB: 3al3_A*
Probab=96.89 E-value=0.00089 Score=65.43 Aligned_cols=91 Identities=22% Similarity=0.223 Sum_probs=65.1
Q ss_pred CCCCcCcEEEEecCCCChhHHHHHHHHHHhcCCEEEeecC----CCccEEEEcCChHHHHH--HHHhhhcccCccccccc
Q 009303 16 NGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLS----KKVTHVLAMDLEALLQQ--VSKQHLARFKGSVIRYQ 89 (538)
Q Consensus 16 ~~~F~g~~iy~~~~~~g~~R~~~l~~~~~~~G~~V~~~ls----~~VTHVV~~~~~~~~~~--l~~~~~~~~~~~lV~~~ 89 (538)
..+|.|+.|||..+ ..+..-++++++..||+|....+ ...||++++-....... .....+...++.+|+.+
T Consensus 133 ~~lF~g~~v~l~~~---~~~~~~l~~ii~agGg~vl~~~~~~~~~~~t~~~vd~~~~~~~~~~~~~~~~~~~~i~~v~~e 209 (235)
T 3al2_A 133 EGAFSGWKVILHVD---QSREAGFKRLLQSGGAKVLPGHSVPLFKEATHLFSDLNKLKPDDSGVNIAEAAAQNVYCLRTE 209 (235)
T ss_dssp SSTTTTCEEEEECC---HHHHHHHHHHHHHTTCEECSSCCGGGGGGCSEEEECC--------CCCHHHHHHTTCEEEETH
T ss_pred CCCCCCcEEEEecC---CCcHHHHHHHHHcCCcEEecCCCCCccccCceEEEecccCCccchhHHHHHHHHcCCcEEcHH
Confidence 58999999999874 35667789999999999987653 34799987532110000 01111122347899999
Q ss_pred hHHHHHhcCcccCccccccc
Q 009303 90 WLEDSLRLGEKVSEDLYRIK 109 (538)
Q Consensus 90 Wl~ecik~g~lv~e~~y~l~ 109 (538)
||.+|+-..++.+.+.|.+.
T Consensus 210 wlld~i~~~~~~~~~~y~l~ 229 (235)
T 3al2_A 210 YIADYLMQESPPHVENYCLP 229 (235)
T ss_dssp HHHHHHHCSSCCCHHHHBCG
T ss_pred HHHHHHhcCCCCChhheEcc
Confidence 99999999999999999884
No 54
>2l42_A DNA-binding protein RAP1; BRCT domain, protein binding; NMR {Saccharomyces cerevisiae}
Probab=96.87 E-value=0.0013 Score=54.92 Aligned_cols=85 Identities=8% Similarity=0.137 Sum_probs=62.5
Q ss_pred CCCCCcCcEEEEecCCC---ChhHHHHHHHHHHhcCCEEEeecCCCc--cEEEEcCChHHHHHHHHhhhcccCccccccc
Q 009303 15 SNGIFAGMRVFLVEKGV---QNRRLQIWRQKLVQMGATVEEKLSKKV--THVLAMDLEALLQQVSKQHLARFKGSVIRYQ 89 (538)
Q Consensus 15 ~~~~F~g~~iy~~~~~~---g~~R~~~l~~~~~~~G~~V~~~ls~~V--THVV~~~~~~~~~~l~~~~~~~~~~~lV~~~ 89 (538)
....|.|+.+||..... ...-.+-|+++++.+||.|...+-.+. -+.|+.... ..+...|+..
T Consensus 8 ~~~vF~g~~Fyin~d~~a~ds~~d~d~L~~lI~~nGG~Vl~~lP~~s~~~~yVVSpyN------------~t~LpTVtpT 75 (106)
T 2l42_A 8 SGPPLSNMKFYLNRDADAHDSLNDIDQLARLIRANGGEVLDSKPRESKENVFIVSPYN------------HTNLPTVTPT 75 (106)
T ss_dssp SSCSSCCCCBEECCSSSCSSCSSTHHHHHHHHHTTTSCCCEECCCCCSSCCCCBCTTC------------CCSSSBCCTT
T ss_pred cCccccCcEEEEcCCCccchhhhHHHHHHHHHHhcCcEEhhhCcccccCCeEEEeCCC------------CCCCccccHH
Confidence 34669999999986422 234467899999999999999994322 233333221 1134679999
Q ss_pred hHHHHHhcCcccCccccccccC
Q 009303 90 WLEDSLRLGEKVSEDLYRIKLD 111 (538)
Q Consensus 90 Wl~ecik~g~lv~e~~y~l~~~ 111 (538)
++..|+..++||+.+.|.+..+
T Consensus 76 YI~aC~~~nTLLnv~~YLvp~d 97 (106)
T 2l42_A 76 YIKACCQSNSLLNMENYLVPYD 97 (106)
T ss_dssp HHHHHHHSTTSCGGGGCCBCSC
T ss_pred HHHHHHhcCceecccccccCch
Confidence 9999999999999999999754
No 55
>2k6g_A Replication factor C subunit 1; protein, BRCT, DNA binding, activator, alternative splicing, ATP-binding, DNA replication, DNA- binding; NMR {Homo sapiens} PDB: 2k7f_A
Probab=96.85 E-value=0.0061 Score=52.43 Aligned_cols=81 Identities=12% Similarity=0.054 Sum_probs=58.0
Q ss_pred CCCCCcCcEEEEecCCCChhHHHHHHHHHHhcCCEEEeecCCCccEEEEcCChHHHHHHHHhhhcccCccccccchHHHH
Q 009303 15 SNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLEALLQQVSKQHLARFKGSVIRYQWLEDS 94 (538)
Q Consensus 15 ~~~~F~g~~iy~~~~~~g~~R~~~l~~~~~~~G~~V~~~ls~~VTHVV~~~~~~~~~~l~~~~~~~~~~~lV~~~Wl~ec 94 (538)
....|.|.+|.|-..-..-. +.-+++++..+||.|....+..++|||+-+.....+..+.. .....||+.+||.++
T Consensus 29 ~~~~l~G~~~v~TG~l~~~~-R~e~~~~i~~~Gg~v~~sVSkkTd~LV~G~~~g~sK~~kA~---~lgI~Ii~E~~f~~l 104 (109)
T 2k6g_A 29 AENCLEGLIFVITGVLESIE-RDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAA---ALGTKIIDEDGLLNL 104 (109)
T ss_dssp CTTTTTTCEEEEESBCSSCC-HHHHHHHHHHTTCEEESSCCTTCCEEEECBCCCHHHHHHHH---HHTCEEECHHHHHHH
T ss_pred CCCCCCCCEEEEeeeCCCCC-HHHHHHHHHHcCCEeeCcccCCceEEEECCCCChHHHHHHH---HcCCeEEeHHHHHHH
Confidence 34569999999976532224 45568999999999999999999999996542211111111 224789999999999
Q ss_pred HhcCc
Q 009303 95 LRLGE 99 (538)
Q Consensus 95 ik~g~ 99 (538)
+..++
T Consensus 105 l~~~E 109 (109)
T 2k6g_A 105 IRNLE 109 (109)
T ss_dssp HHHTC
T ss_pred HHhCC
Confidence 97653
No 56
>2cok_A Poly [ADP-ribose] polymerase-1; BRCT domain, DNA repair, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2le0_A
Probab=96.66 E-value=0.0029 Score=54.85 Aligned_cols=86 Identities=9% Similarity=0.125 Sum_probs=58.0
Q ss_pred CCCCcCcEEEEecCCCChhHHHHHHHHHHhcCCEEEeecCCCccEEEEcCC-hHHHHHHHHhhhcccCccccccch----
Q 009303 16 NGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDL-EALLQQVSKQHLARFKGSVIRYQW---- 90 (538)
Q Consensus 16 ~~~F~g~~iy~~~~~~g~~R~~~l~~~~~~~G~~V~~~ls~~VTHVV~~~~-~~~~~~l~~~~~~~~~~~lV~~~W---- 90 (538)
...|.|++|.|-.. +... +.-+++++..+||.|....+..+||||+.+. ...-..+++ .......||+.+|
T Consensus 8 ~~~l~G~~~ViTG~-l~~~-R~e~k~~ie~~Ggkv~~sVskkT~~lV~g~~~e~~gsKl~k--A~~lgI~IvsE~~l~~~ 83 (113)
T 2cok_A 8 DKPLSNMKILTLGK-LSRN-KDEVKAMIEKLGGKLTGTANKASLCISTKKEVEKMNKKMEE--VKEANIRVVSEDFLQDV 83 (113)
T ss_dssp CCSSSSCEEEECSC-CSSC-HHHHHHHHHHTTCEEESCSTTCSEEECCHHHHHHCCHHHHH--HHHTTCCEECTHHHHHH
T ss_pred CCCcCCCEEEEEec-CCCC-HHHHHHHHHHCCCEEcCccccCccEEEECCCCCCCChHHHH--HHHCCCcEEeHHHHHHH
Confidence 44699999998654 3334 4556899999999999999999999998622 110011111 1223578999999
Q ss_pred ------HHHHHhcCcccCccc
Q 009303 91 ------LEDSLRLGEKVSEDL 105 (538)
Q Consensus 91 ------l~ecik~g~lv~e~~ 105 (538)
+.+||+..+..||+.
T Consensus 84 ~~~~~~~~~~i~k~~i~~w~~ 104 (113)
T 2cok_A 84 SASTKSLQELFLAHILSSWGA 104 (113)
T ss_dssp HSCCSCHHHHHHHTBCSSCCC
T ss_pred HhhchhHHHHHHHhcCCCCCC
Confidence 555555555555544
No 57
>1l7b_A DNA ligase; BRCT, autostructure, structural genomics, NESG, PSI, protein structure initiative, northeast structural genomics consortium; HET: DNA; NMR {Thermus thermophilus} SCOP: c.15.1.2
Probab=96.57 E-value=0.0023 Score=53.42 Aligned_cols=77 Identities=12% Similarity=0.110 Sum_probs=56.4
Q ss_pred CCCCCcCcEEEEecCCCChhHHHHHHHHHHhcCCEEEeecCCCccEEEEcCChHHHHHHHHhhhcccCccccccchHHHH
Q 009303 15 SNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLEALLQQVSKQHLARFKGSVIRYQWLEDS 94 (538)
Q Consensus 15 ~~~~F~g~~iy~~~~~~g~~R~~~l~~~~~~~G~~V~~~ls~~VTHVV~~~~~~~~~~l~~~~~~~~~~~lV~~~Wl~ec 94 (538)
+...|.|.+|.|-..--. . +.-+++++..+||.|....+..+||||+-+... .+..+ .......||+.+||.++
T Consensus 4 ~~~~l~G~~~v~TG~l~~-~-R~e~~~~i~~~Gg~v~~sVskkt~~LV~g~~~g-sK~~k---A~~lgI~Ii~E~~f~~~ 77 (92)
T 1l7b_A 4 GGEALKGLTFVITGELSR-P-REEVKALLRRLGAKVTDSVSRKTSYLVVGENPG-SKLEK---ARALGVPTLTEEELYRL 77 (92)
T ss_dssp CCCSSTTCEEECSTTTTS-C-HHHHHHHHHHTTCEEESCCSSSCCCBEECSSSS-TTHHH---HHCSSSCCEEHHHHHHH
T ss_pred CCCCcCCcEEEEecCCCC-C-HHHHHHHHHHcCCEEeCcccCCeeEEEeCCCCC-hHHHH---HHHcCCcEEeHHHHHHH
Confidence 345699999998544323 4 566789999999999999999999999965432 11111 12335889999999999
Q ss_pred Hhc
Q 009303 95 LRL 97 (538)
Q Consensus 95 ik~ 97 (538)
+..
T Consensus 78 l~~ 80 (92)
T 1l7b_A 78 LEA 80 (92)
T ss_dssp HHH
T ss_pred HHh
Confidence 864
No 58
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=96.46 E-value=0.003 Score=49.82 Aligned_cols=51 Identities=22% Similarity=0.367 Sum_probs=38.6
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHhCCcchhHHHHhhchhHHHHHHhhccCCCHHHHHHHHH
Q 009303 254 DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYE 313 (538)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~ 313 (538)
..|.+|||||..++..|.+.. |.+ +.+.+. ..+.|..|+|||+++|..++.
T Consensus 14 ~~L~~i~giG~~~a~~Ll~~f--gs~---~~l~~a----~~~~L~~i~Gig~~~a~~i~~ 64 (75)
T 1x2i_A 14 LIVEGLPHVSATLARRLLKHF--GSV---ERVFTA----SVAELMKVEGIGEKIAKEIRR 64 (75)
T ss_dssp HHHTTSTTCCHHHHHHHHHHH--CSH---HHHHHC----CHHHHTTSTTCCHHHHHHHHH
T ss_pred HHHcCCCCCCHHHHHHHHHHc--CCH---HHHHhC----CHHHHhcCCCCCHHHHHHHHH
Confidence 458899999999999988754 544 444332 234567999999999999986
No 59
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=96.31 E-value=0.0025 Score=60.32 Aligned_cols=53 Identities=13% Similarity=0.192 Sum_probs=38.2
Q ss_pred hhcCCCCCCHHHHHHHHHHHHhCCcchhHHHHhhchhHHHHHHhhccCCCHHHHHHHHH
Q 009303 255 QVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYE 313 (538)
Q Consensus 255 ~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~ 313 (538)
.|.++||||+++|..|-.......+ .+.+. ....+.|++|||||+|||++++.
T Consensus 73 ~L~~v~GIGpk~A~~iL~~f~~~~l--~~aI~----~~d~~~L~~vpGIG~K~A~rI~~ 125 (191)
T 1ixr_A 73 LLLSVSGVGPKVALALLSALPPRLL--ARALL----EGDARLLTSASGVGRRLAERIAL 125 (191)
T ss_dssp HHHSSSCCCHHHHHHHHHHSCHHHH--HHHHH----TTCHHHHTTSTTCCHHHHHHHHH
T ss_pred HHhcCCCcCHHHHHHHHHhCChHHH--HHHHH----hCCHHHHHhCCCCCHHHHHHHHH
Confidence 4778999999999988765433111 22233 23456788999999999999975
No 60
>2ebu_A Replication factor C subunit 1; A/B/A 3 layers, parallel beta-sheet, DNA replication, clamp loader, RFC1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.31 E-value=0.014 Score=50.46 Aligned_cols=78 Identities=13% Similarity=0.073 Sum_probs=56.0
Q ss_pred CCCCcCcEEEEecCCCChhHHHHHHHHHHhcCCEEEeecCCCccEEEEcCChHHHHHHHHhhhcccCccccccchHHHHH
Q 009303 16 NGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLEALLQQVSKQHLARFKGSVIRYQWLEDSL 95 (538)
Q Consensus 16 ~~~F~g~~iy~~~~~~g~~R~~~l~~~~~~~G~~V~~~ls~~VTHVV~~~~~~~~~~l~~~~~~~~~~~lV~~~Wl~eci 95 (538)
...|.|.+|.|-..--.-. +.-+++++..+||.|....+..++|||+-+.....+..+. ......||+.+||.+++
T Consensus 20 ~~~l~G~~~v~TG~l~~~~-R~e~~~~i~~~Ggkv~~sVSkkTd~LV~G~~~g~sKl~KA---~~lgI~IisE~~f~~ll 95 (112)
T 2ebu_A 20 ENCLEGLIFVITGVLESIE-RDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKA---AALGTKIIDEDGLLNLI 95 (112)
T ss_dssp SSSSTTCEEEECSCCSSSC-HHHHHHHHHHTTCEECSSCCSSCCEEEECSSCCSHHHHHH---HHHTCEEEEHHHHHHHH
T ss_pred CCCcCCCEEEEeeeCCCCC-HHHHHHHHHHcCCEEeccccCCeeEEEecCCCChHHHHHH---HHcCCeEEeHHHHHHHH
Confidence 4569999999965422224 4556899999999999999999999999654221111111 12247899999999999
Q ss_pred hc
Q 009303 96 RL 97 (538)
Q Consensus 96 k~ 97 (538)
..
T Consensus 96 ~~ 97 (112)
T 2ebu_A 96 RT 97 (112)
T ss_dssp HH
T ss_pred hh
Confidence 74
No 61
>2i5h_A Hypothetical protein AF1531; PFAM:DUF655, PSI-2, structural genomics, protein structure initiative; 1.74A {Archaeoglobus fulgidus} SCOP: e.71.1.1
Probab=96.27 E-value=0.0033 Score=59.35 Aligned_cols=58 Identities=24% Similarity=0.360 Sum_probs=43.3
Q ss_pred hhHHHHHHHHHHHhcCCcccc-chhhhcCCCCCCHHHHHHHHHHHHhCCcchhHHHHhhchhHHHHHHhhccCCCHH
Q 009303 231 RRSFSYYKAIPVIEKLPFKIE-SADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPA 306 (538)
Q Consensus 231 ~r~~aY~rAa~~l~~l~~~i~-~~~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpk 306 (538)
.++..|-+.+ .+|+ +.++|..|||||++.|..|.++-+.|.+..+|+|.+ +|.|||..
T Consensus 115 ~~fv~f~n~a-------~pITA~~~eL~~LpGIG~k~A~~IIeyRe~G~F~s~eDL~~-----------RV~GIg~~ 173 (205)
T 2i5h_A 115 KKYVDFFNKA-------DSITTRMHQLELLPGVGKKMMWAIIEERKKRPFESFEDIAQ-----------RVKGIQRP 173 (205)
T ss_dssp HHHHHHHC---------CCBCSSSBGGGGSTTCCHHHHHHHHHHHHHSCCCSHHHHHH-----------HSTTCCCH
T ss_pred hhhhhhcccc-------CCccCCHHHHhcCCCcCHHHHHHHHHHHhcCCCCCHHHHHH-----------hcCCCCcc
Confidence 4565663333 3444 568899999999999999999998899998888753 58995543
No 62
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=96.18 E-value=0.004 Score=49.95 Aligned_cols=51 Identities=18% Similarity=0.394 Sum_probs=38.6
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHhCCcchhHHHHhhchhHHHHHHhhccCCCHHHHHHHHH
Q 009303 254 DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYE 313 (538)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~ 313 (538)
..|..|||||+..+.+|.+.. |. ++.+.+. ..+.|.+|+|||+++|..+++
T Consensus 24 ~~L~~I~gIG~~~A~~Ll~~f--gs---l~~l~~a----~~eeL~~i~GIG~~~a~~I~~ 74 (78)
T 1kft_A 24 SSLETIEGVGPKRRQMLLKYM--GG---LQGLRNA----SVEEIAKVPGISQGLAEKIFW 74 (78)
T ss_dssp CGGGGCTTCSSSHHHHHHHHH--SC---HHHHHHC----CHHHHTTSSSTTSHHHHHHHH
T ss_pred HHHhcCCCCCHHHHHHHHHHc--CC---HHHHHHC----CHHHHHHCCCCCHHHHHHHHH
Confidence 358899999999999988764 44 4444332 234577999999999999976
No 63
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=96.14 E-value=0.0035 Score=60.25 Aligned_cols=53 Identities=15% Similarity=0.224 Sum_probs=37.6
Q ss_pred hhcCCCCCCHHHHHHHHHHHHhCCcchhHHHHhhchhHHHHHHhhccCCCHHHHHHHHH
Q 009303 255 QVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYE 313 (538)
Q Consensus 255 ~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~ 313 (538)
.|.+++|||+++|..|-+.+.. ..+.. ..-..-.+.|++|||||+|||+++..
T Consensus 89 ~L~sv~GIGpk~A~~Ils~~~~---~~l~~---aI~~~d~~~L~~vpGIG~KtA~rIi~ 141 (212)
T 2ztd_A 89 TLLSVSGVGPRLAMAALAVHDA---PALRQ---VLADGNVAALTRVPGIGKRGAERMVL 141 (212)
T ss_dssp HHHTSTTCCHHHHHHHHHHSCH---HHHHH---HHHTTCHHHHHTSTTCCHHHHHHHHH
T ss_pred HhcCcCCcCHHHHHHHHHhCCH---HHHHH---HHHhCCHHHHhhCCCCCHHHHHHHHH
Confidence 4777999999999998765433 23321 11122345678999999999999975
No 64
>2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} SCOP: a.60.2.7
Probab=96.07 E-value=0.0036 Score=49.87 Aligned_cols=46 Identities=20% Similarity=0.385 Sum_probs=36.4
Q ss_pred HHHHHhhccCCCHHHHHHHHHh-CCCCHHHHhhccCcchhhhccccchhhhcc
Q 009303 293 TISLFGEVWGIGPATAQKLYEK-GHRTLDDLKNEDSLTHSQRLGLKYFDDIKT 344 (538)
Q Consensus 293 ~l~lf~~I~GvGpktA~~ly~~-GirtledL~~~~~L~~~q~~Glk~~ed~~~ 344 (538)
....|.+|+|||+++|+++++. ++.|++||.+ ..++|.+.++.+..
T Consensus 25 ~~~~L~~ipGIG~~~A~~Il~~r~~~s~~eL~~------v~Gig~k~~~~i~~ 71 (75)
T 2duy_A 25 SLEELMALPGIGPVLARRIVEGRPYARVEDLLK------VKGIGPATLERLRP 71 (75)
T ss_dssp CHHHHTTSTTCCHHHHHHHHHTCCCSSGGGGGG------STTCCHHHHHHHGG
T ss_pred CHHHHHhCCCCCHHHHHHHHHHcccCCHHHHHh------CCCCCHHHHHHHHH
Confidence 4556779999999999999997 8999998874 56677766666554
No 65
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=96.00 E-value=0.0083 Score=49.31 Aligned_cols=52 Identities=17% Similarity=0.337 Sum_probs=38.4
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHhCCcchhHHHHhhchhHHHHHHhhccCCCHHHHHHHHHh
Q 009303 254 DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK 314 (538)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~~ 314 (538)
..|.+|||||+..+.+|.+.. |. ++.+.+.. .+.|.+|+|||+++|..++..
T Consensus 19 ~~L~~IpgIG~~~A~~Ll~~f--gs---l~~l~~a~----~~eL~~i~GIG~~~a~~I~~~ 70 (89)
T 1z00_A 19 ECLTTVKSVNKTDSQTLLTTF--GS---LEQLIAAS----REDLALCPGLGPQKARRLFDV 70 (89)
T ss_dssp HHHTTSSSCCHHHHHHHHHHT--CB---HHHHHHCC----HHHHHTSTTCCHHHHHHHHHH
T ss_pred HHHHcCCCCCHHHHHHHHHHC--CC---HHHHHhCC----HHHHHhCCCCCHHHHHHHHHH
Confidence 457899999999988887643 43 44444322 345679999999999999863
No 66
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=96.00 E-value=0.0035 Score=59.88 Aligned_cols=52 Identities=19% Similarity=0.291 Sum_probs=37.4
Q ss_pred hhcCCCCCCHHHHHHHHHHHHhCCcchh-HHHHhhchhHHHHHHhhccCCCHHHHHHHHH
Q 009303 255 QVKGLPGIGKSMQDHIQEIVTTGKLSKL-EHFEKDEKVRTISLFGEVWGIGPATAQKLYE 313 (538)
Q Consensus 255 ~l~~lpgIG~~ia~kI~Eil~tG~~~~l-e~l~~~~~~~~l~lf~~I~GvGpktA~~ly~ 313 (538)
.|.++||||+++|..|-..... ..+ +.+. ....+.|++|||||+|||++++.
T Consensus 74 ~L~~V~GIGpk~A~~iL~~f~~---~~l~~aI~----~~d~~~L~~vpGIG~K~A~rI~~ 126 (203)
T 1cuk_A 74 ELIKTNGVGPKLALAILSGMSA---QQFVNAVE----REEVGALVKLPGIGKKTAERLIV 126 (203)
T ss_dssp HHHHSSSCCHHHHHHHHHHSCH---HHHHHHHH----TTCHHHHHTSTTCCHHHHHHHHH
T ss_pred HHhcCCCcCHHHHHHHHhhCCh---HHHHHHHH----hCCHHHHhhCCCCCHHHHHHHHH
Confidence 4667999999999988764432 222 2333 23466788999999999999975
No 67
>3arc_U Photosystem II 12 kDa extrinsic protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_U* 2axt_U* 3bz2_U* 3kzi_U* 3prq_U* 3prr_U* 3a0b_U* 3a0h_U*
Probab=95.99 E-value=0.0017 Score=54.79 Aligned_cols=47 Identities=17% Similarity=0.229 Sum_probs=38.2
Q ss_pred HHHHHhhccCCCHHHHHHHHHh-CCCCHHHHhhccCcchhhhccccchhhhccC
Q 009303 293 TISLFGEVWGIGPATAQKLYEK-GHRTLDDLKNEDSLTHSQRLGLKYFDDIKTR 345 (538)
Q Consensus 293 ~l~lf~~I~GvGpktA~~ly~~-GirtledL~~~~~L~~~q~~Glk~~ed~~~~ 345 (538)
..+.|+.||||||++|+++.+. +|+|++||.+ ..++|-+.++.+...
T Consensus 24 s~~eL~~lpGIG~~~A~~IV~~GpF~s~edL~~------V~Gig~~~~e~l~~~ 71 (97)
T 3arc_U 24 NIAAFIQYRGLYPTLAKLIVKNAPYESVEDVLN------IPGLTERQKQILREN 71 (97)
T ss_dssp CGGGGGGSTTCTTHHHHHHHHHCCCSSGGGGGG------CTTCCHHHHHHHHHT
T ss_pred CHHHHhHCCCCCHHHHHHHHHcCCCCCHHHHHh------ccCCCHHHHHHHHHH
Confidence 4567889999999999999998 7999999985 567777777766543
No 68
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=95.96 E-value=0.012 Score=65.69 Aligned_cols=84 Identities=18% Similarity=0.298 Sum_probs=62.8
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHhCCcchhHHHHhhchhHHHHHHhhccCCCHHHHHHHHHhCCCCHHHHhhcc--Ccchh
Q 009303 254 DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED--SLTHS 331 (538)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~~GirtledL~~~~--~L~~~ 331 (538)
+++..|+|+|++.+++|.+-++.-+-..| .+.+--| .|+|||+++|+.|.+. +.|++.|.++. .|..+
T Consensus 480 ~~L~~l~gfG~Ksa~nLl~aIe~sk~~~l--------~R~L~al-gi~~VG~~~Ak~La~~-Fgsl~~l~~As~eeL~~i 549 (671)
T 2owo_A 480 GKLTGLERMGPKSAQNVVNALEKAKETTF--------ARFLYAL-GIREVGEATAAGLAAY-FGTLEALEAASIEELQKV 549 (671)
T ss_dssp HHHHTSTTCCHHHHHHHHHHHHHHTBCCH--------HHHHHHT-TCTTCCHHHHHHHHHH-HCSHHHHHTCCHHHHTTS
T ss_pred HHhhcccccchhHHHHHHHHHHHHhcCCh--------hheehhh-cccCccHHHHHHHHHH-cCCHHHHHhCCHHHHhhc
Confidence 67899999999999999876654222222 2334445 9999999999999886 67899998653 57888
Q ss_pred hhccccchhhhccCcC
Q 009303 332 QRLGLKYFDDIKTRIP 347 (538)
Q Consensus 332 q~~Glk~~ed~~~~i~ 347 (538)
.++|.+..+.+..-+.
T Consensus 550 ~GIG~~~A~sI~~ff~ 565 (671)
T 2owo_A 550 PDVGIVVASHVHNFFA 565 (671)
T ss_dssp TTCCHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHH
Confidence 8999877777765544
No 69
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=95.83 E-value=0.0072 Score=67.30 Aligned_cols=83 Identities=19% Similarity=0.298 Sum_probs=61.3
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHhCCcchhHHHHhhchhHHHHHHhhccCCCHHHHHHHHHhCCCCHHHHhhcc--Ccchh
Q 009303 254 DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED--SLTHS 331 (538)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~~GirtledL~~~~--~L~~~ 331 (538)
++|..++|+|++.+++|.+-++.-+-..+ ...+--| +|+|||+++|+.|.+. +.|++.|.++. .|..+
T Consensus 475 e~L~~l~g~G~Ksa~nLl~aIe~sk~~~l--------~R~L~al-GI~~VG~~~Ak~La~~-Fgsl~~l~~As~eeL~~I 544 (667)
T 1dgs_A 475 EDLLGLERMGEKSAQNLLRQIEESKHRGL--------ERLLYAL-GLPGVGEVLARNLARR-FGTMDRLLEASLEELIEV 544 (667)
T ss_dssp HHHHTTSSCCSTTHHHHHHHHHHGGGCCH--------HHHHHHT-TCSSCCHHHHHHHHHT-TSBHHHHTTCCHHHHHTS
T ss_pred HHHhcccccchhhHHHHHHHHHHHhcCcH--------HHhhHhh-ccCCccHHHHHHHHHH-cCCHHHHHhCCHHHHHhc
Confidence 67899999999999998766553221111 2234444 9999999999999875 77899997653 57788
Q ss_pred hhccccchhhhccCc
Q 009303 332 QRLGLKYFDDIKTRI 346 (538)
Q Consensus 332 q~~Glk~~ed~~~~i 346 (538)
.++|.+..+.+...+
T Consensus 545 ~GIG~~~A~sI~~ff 559 (667)
T 1dgs_A 545 EEVGELTARAILETL 559 (667)
T ss_dssp TTCCHHHHHHHHHHH
T ss_pred cCcCHHHHHHHHHHH
Confidence 899988777776544
No 70
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=95.82 E-value=0.0097 Score=49.18 Aligned_cols=51 Identities=18% Similarity=0.354 Sum_probs=38.1
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHhCCcchhHHHHhhchhHHHHHHhhccCCCHHHHHHHHH
Q 009303 254 DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYE 313 (538)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~ 313 (538)
..|.+|||||+..+.+|.+.. |. ++.+.... .+.|.+|+|||+++|..+++
T Consensus 32 ~~L~~IpgIG~~~A~~Ll~~f--gs---~~~l~~as----~~eL~~i~GIG~~~a~~I~~ 82 (91)
T 2a1j_B 32 ECLTTVKSVNKTDSQTLLTTF--GS---LEQLIAAS----REDLALCPGLGPQKARRLFD 82 (91)
T ss_dssp HHHTTSTTCCHHHHHHHHHHH--SS---HHHHHSCC----HHHHHTSSSCCSHHHHHHHH
T ss_pred HHHHcCCCCCHHHHHHHHHHC--CC---HHHHHhCC----HHHHHhCCCCCHHHHHHHHH
Confidence 457899999999999887654 44 34444322 34567999999999999986
No 71
>3qbz_A DDK kinase regulatory subunit DBF4; FHA domain,RAD53, replication checkpoint, cell cycle; 2.69A {Saccharomyces cerevisiae}
Probab=95.61 E-value=0.0092 Score=54.15 Aligned_cols=48 Identities=17% Similarity=0.338 Sum_probs=37.6
Q ss_pred CCCc-CcEEEEecCCCC------h----hHHHHHHHHHHhcCCEEEeecCCCccEEEEc
Q 009303 17 GIFA-GMRVFLVEKGVQ------N----RRLQIWRQKLVQMGATVEEKLSKKVTHVLAM 64 (538)
Q Consensus 17 ~~F~-g~~iy~~~~~~g------~----~R~~~l~~~~~~~G~~V~~~ls~~VTHVV~~ 64 (538)
.+|+ +++|||...... . .+..++++.+...||+|+.-+|..|||||..
T Consensus 57 kifk~~~vfYFDt~~~~~~~~~~k~kl~K~~~llkr~f~~LGA~I~~FFd~~VTiVIT~ 115 (160)
T 3qbz_A 57 KIMKRDSRIYFDITDDVEMNTYNKSKMDKRRDLLKRGFLTLGAQITQFFDTTVTIVITR 115 (160)
T ss_dssp HHHHHHCEEEECCCCSSCCCHHHHHHHHHHHHHHHHHHHTTTCEEESSCCTTCCEEEES
T ss_pred HhCccCcEEEecCCChhhhhHHHHHHHHHHHHHHHHHHHHcCCEeeeeccCCeEEEEec
Confidence 5798 899999865432 1 1234566788899999999999999999983
No 72
>3oq0_A DBF4, protein DNA52; DDK, BRCT, RAD53, replication checkpoint, FHA domain, regula subunit of DDK, CDC7, phosphorylation, nuclear; 2.70A {Saccharomyces cerevisiae}
Probab=95.46 E-value=0.02 Score=51.57 Aligned_cols=47 Identities=15% Similarity=0.316 Sum_probs=39.4
Q ss_pred CCcCcEEEEecCCCC----------hhHHHHHHHHHHhcCCEEEeecCCCccEEEEc
Q 009303 18 IFAGMRVFLVEKGVQ----------NRRLQIWRQKLVQMGATVEEKLSKKVTHVLAM 64 (538)
Q Consensus 18 ~F~g~~iy~~~~~~g----------~~R~~~l~~~~~~~G~~V~~~ls~~VTHVV~~ 64 (538)
|=++.+|||...+.. ..+..+|++.+...||+|++-++.+|||||..
T Consensus 21 M~r~s~iYFdt~~~~~~~~~~~~~l~k~~~llkk~f~~LGa~I~~FFd~~VTiIITr 77 (151)
T 3oq0_A 21 MKRDSRIYFDITDDVEMNTYNKSKMDKRRDLLKRGFLTLGAQITQFFDTTVTIVITR 77 (151)
T ss_dssp CCCCCEEEECCCCSSCCCHHHHHHHHHHHHHHHHHHHHHTCEEESSCCTTCCEEEES
T ss_pred hccCCEEEEeCCCcchhhHHHHHHHHHHHHHHHHHHHHcCCEEeeecCCceEEEEeC
Confidence 339999999977542 34567888999999999999999999999984
No 73
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=95.37 E-value=0.012 Score=48.63 Aligned_cols=52 Identities=17% Similarity=0.210 Sum_probs=37.6
Q ss_pred hhHHHHHHhhccCCCHHHHHHHHHhCCCCHHHHhhcc--Ccchhhhccccchhhh
Q 009303 290 KVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED--SLTHSQRLGLKYFDDI 342 (538)
Q Consensus 290 ~~~~l~lf~~I~GvGpktA~~ly~~GirtledL~~~~--~L~~~q~~Glk~~ed~ 342 (538)
....+..|+.|+|||+++|++|++. +.|+++|..+. .|..+.++|.+..+.+
T Consensus 27 ~~~~~~~L~~IpgIG~~~A~~Ll~~-fgs~~~l~~as~~eL~~i~GIG~~~a~~I 80 (91)
T 2a1j_B 27 VSRVTECLTTVKSVNKTDSQTLLTT-FGSLEQLIAASREDLALCPGLGPQKARRL 80 (91)
T ss_dssp HHHHHHHHTTSTTCCHHHHHHHHHH-HSSHHHHHSCCHHHHHTSSSCCSHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHH-CCCHHHHHhCCHHHHHhCCCCCHHHHHHH
Confidence 3446667779999999999999986 33788888543 4666677776554443
No 74
>3sqd_A PAX-interacting protein 1; tandem BRCT domains, cell cycle; HET: SEP; 2.15A {Homo sapiens}
Probab=95.33 E-value=0.029 Score=54.02 Aligned_cols=85 Identities=9% Similarity=0.089 Sum_probs=57.3
Q ss_pred CCCCcCcEEEEecCCCChhHHHHHHHHHHhcCCEEEeecCC-----------C-c-cEEEEcCCh-HHHHHHHHhhhccc
Q 009303 16 NGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSK-----------K-V-THVLAMDLE-ALLQQVSKQHLARF 81 (538)
Q Consensus 16 ~~~F~g~~iy~~~~~~g~~R~~~l~~~~~~~G~~V~~~ls~-----------~-V-THVV~~~~~-~~~~~l~~~~~~~~ 81 (538)
..+|.|+.||+.+.-.+ . ...++.++..+||+|...... . . ..||+.+.. ...+.+. +.
T Consensus 120 ~~LF~G~~f~it~~~~~-~-~~~l~~lI~~~GG~v~~~~p~~~~~~~~~~~~~~~~~ivis~~~d~~~~~~~~-----~~ 192 (219)
T 3sqd_A 120 SPLFKAKYFYITPGICP-S-LSTMKAIVECAGGKVLSKQPSFRKLMEHKQNSSLSEIILISCENDLHLCREYF-----AR 192 (219)
T ss_dssp SCTTTTEEEEECTTCSS-C-HHHHHHHHHHTTCEEESSCCCHHHHHHHHHCTTSCEEEEEECGGGGGGGHHHH-----HT
T ss_pred ccccCCcEEEEeCCCCC-C-HHHHHHHHHHCCCEEECCCCchHHhhhhhcccCCCCEEEEecccHHHHHHHHH-----HC
Confidence 47999999999775433 3 467899999999999998732 1 2 233333221 1212111 12
Q ss_pred CccccccchHHHHHhcCcccCcccccc
Q 009303 82 KGSVIRYQWLEDSLRLGEKVSEDLYRI 108 (538)
Q Consensus 82 ~~~lV~~~Wl~ecik~g~lv~e~~y~l 108 (538)
+..+++.+|+.+||=..++ |-+.|.+
T Consensus 193 ~~~v~s~E~il~~Il~q~l-d~~~~~~ 218 (219)
T 3sqd_A 193 GIDVHNAEFVLTGVLTQTL-DYESYKF 218 (219)
T ss_dssp TCCCEETHHHHHHHHHTCC-CTTTSBC
T ss_pred CCcEEeHHHHHHHHHheee-cchhccc
Confidence 4679999999999996554 8888876
No 75
>1s5l_U Photosystem II 12 kDa extrinsic protein; photosynthesis, oxygen-evolving, tetra- manganese, membrane; HET: CL1 PHO HEM PL9 LMT BCR; 3.50A {Thermosynechococcus elongatus}
Probab=95.13 E-value=0.0073 Score=53.45 Aligned_cols=40 Identities=20% Similarity=0.273 Sum_probs=32.6
Q ss_pred HHHHHhhccCCCHHHHHHHHHh-CCCCHHHHhhccCcchhhhccccc
Q 009303 293 TISLFGEVWGIGPATAQKLYEK-GHRTLDDLKNEDSLTHSQRLGLKY 338 (538)
Q Consensus 293 ~l~lf~~I~GvGpktA~~ly~~-GirtledL~~~~~L~~~q~~Glk~ 338 (538)
..+.|+++|||||++|+++.+. .+.|+|||.+ ..++|-+.
T Consensus 61 ~~~eL~~LpGiGp~~A~~II~~GpF~svedL~~------V~GIg~k~ 101 (134)
T 1s5l_U 61 NIAAFIQYRGLYPTLAKLIVKNAPYESVEDVLN------IPGLTERQ 101 (134)
T ss_dssp CGGGGGGSTTCTHHHHHHHHHTCCCSSGGGGGG------CTTCCHHH
T ss_pred CHHHHHHCCCCCHHHHHHHHHcCCCCCHHHHHh------CCCCCHHH
Confidence 4556779999999999999987 7999999986 45666543
No 76
>3oq4_A DBF4, protein DNA52; DDK, BRCT, RAD53, replication checkpoint, FHA domain, regula subunit of DDK, CDC7, phosphorylation, nuclear; 2.40A {Saccharomyces cerevisiae}
Probab=95.12 E-value=0.036 Score=48.96 Aligned_cols=48 Identities=15% Similarity=0.300 Sum_probs=40.0
Q ss_pred CCCcCcEEEEecCCCC----------hhHHHHHHHHHHhcCCEEEeecCCCccEEEEc
Q 009303 17 GIFAGMRVFLVEKGVQ----------NRRLQIWRQKLVQMGATVEEKLSKKVTHVLAM 64 (538)
Q Consensus 17 ~~F~g~~iy~~~~~~g----------~~R~~~l~~~~~~~G~~V~~~ls~~VTHVV~~ 64 (538)
.|=++.+|||...... ..|.++|++-++..||+|++-++.+|||||..
T Consensus 3 ~m~r~s~iyfd~~~~~~~~~~~~~k~~k~~~llk~~f~~LGa~I~~FFd~~VTiiITr 60 (134)
T 3oq4_A 3 HMKRDSRIYFDITDDVEMNTYNKSKMDKRRDLLKRGFLTLGAQITQFFDTTVTIVITR 60 (134)
T ss_dssp CCCTTCEEEECCCCSSCCCHHHHHHHHHHHHHHHHHHHHTTCEEESSCCTTCCEEEES
T ss_pred cccccceEEecCCchHHHHHHHHHhhHHHHHHHHHHHHHcCCEEeeecCCceEEEEeC
Confidence 4667899999976422 34678999999999999999999999999984
No 77
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=94.97 E-value=0.018 Score=47.21 Aligned_cols=48 Identities=19% Similarity=0.223 Sum_probs=35.1
Q ss_pred hHHHHHHhhccCCCHHHHHHHHHhCCCCHHHHhhcc--Ccchhhhccccch
Q 009303 291 VRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED--SLTHSQRLGLKYF 339 (538)
Q Consensus 291 ~~~l~lf~~I~GvGpktA~~ly~~GirtledL~~~~--~L~~~q~~Glk~~ 339 (538)
......|+.|+|||+++|++|++. +.|+++|.++. .|....++|.+..
T Consensus 15 ~~~~~~L~~IpgIG~~~A~~Ll~~-fgsl~~l~~a~~~eL~~i~GIG~~~a 64 (89)
T 1z00_A 15 SRVTECLTTVKSVNKTDSQTLLTT-FGSLEQLIAASREDLALCPGLGPQKA 64 (89)
T ss_dssp HHHHHHHTTSSSCCHHHHHHHHHH-TCBHHHHHHCCHHHHHTSTTCCHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHH-CCCHHHHHhCCHHHHHhCCCCCHHHH
Confidence 345666779999999999999986 44788887543 4666666665443
No 78
>3bqs_A Uncharacterized protein; 10114F, NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.42A {Listeria monocytogenes str} PDB: 3bqt_A 3mab_A
Probab=94.96 E-value=0.015 Score=48.51 Aligned_cols=31 Identities=29% Similarity=0.335 Sum_probs=28.1
Q ss_pred HHhhccCCCHHHHHHHHHhCCCCHHHHhhcc
Q 009303 296 LFGEVWGIGPATAQKLYEKGHRTLDDLKNED 326 (538)
Q Consensus 296 lf~~I~GvGpktA~~ly~~GirtledL~~~~ 326 (538)
-|+.+|+|||++++.|++.||.|++||+..+
T Consensus 5 ~L~~LPNiG~~~e~~L~~vGI~s~e~L~~~G 35 (93)
T 3bqs_A 5 NLSELPNIGKVLEQDLIKAGIKTPVELKDVG 35 (93)
T ss_dssp CGGGSTTCCHHHHHHHHHTTCCSHHHHHHHH
T ss_pred HhhcCCCCCHHHHHHHHHcCCCCHHHHHhCC
Confidence 3679999999999999999999999999654
No 79
>3nyb_A Poly(A) RNA polymerase protein 2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=94.61 E-value=0.31 Score=49.47 Aligned_cols=124 Identities=15% Similarity=0.187 Sum_probs=73.1
Q ss_pred HHHHHHHhhhcCCCeEEEecccccccCC-cCCCeeEEEecCCcch-hhhhHHHHHHHHHHcCcccceeeeccccCCCCCC
Q 009303 355 ERLLQKAGEEVLPEVIILCGGSYRRGKA-SCGDLDVVIMHPDRKS-HKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDS 432 (538)
Q Consensus 355 ~~iv~~~~~~~~p~~~v~~~Gs~RRgke-~~~DVDiLit~~~~~~-~~~~l~~vv~~L~~~g~l~~~l~~s~~~~~~~~~ 432 (538)
-+.++++++...|++.|.+.||+++|.- -.+|||++|..|.... ...+|..+.+.|++.+...+...... -..
T Consensus 46 ~~~l~~~~~~~~p~~~v~~fGS~~~g~~~~~SDiDl~v~~~~~~~~~~~~l~~l~~~L~~~~~~~~v~~I~~-----ArV 120 (323)
T 3nyb_A 46 ISTIREAVKQLWPDADLHVFGSYSTDLYLPGSDIDCVVTSELGGKESRNNLYSLASHLKKKNLATEVEVVAK-----ARV 120 (323)
T ss_dssp HHHHHHHHHTTCTTCCEEEESTTTTTCCCTTSCEEEEECSSCCGGGHHHHHHHHHHHHHHTTSCSSCEEEES-----SSC
T ss_pred HHHHHHHHHHHCCCCEEEEeCccccCCCCCCCCceEEEecCCCChhHHHHHHHHHHHHhhCCCceEEEEEec-----cCC
Confidence 3444555555679999999999999976 4689999998877542 24577788888888876543211100 000
Q ss_pred cceeeeeeeecCCCccceeeeEEEecCchhHHH-HH-Hh----hccHHHHHHHHHHHHHcCCc
Q 009303 433 GVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFG-LI-AW----TGNDVLNRRLRLLAESKGYR 489 (538)
Q Consensus 433 ~~~~~~g~~~~~~~~~~~RVDl~~~p~~~~~~a-Ll-~~----TGS~~fnr~lR~~A~~kg~~ 489 (538)
.+-++ ..+ ...+.|||-+....-.-.+ ++ .| ..=+...+-++.||+.+|+.
T Consensus 121 PIIk~----~~~--~~gi~vDIs~~~~~g~~~t~li~~~~~~~~~~r~lv~~iK~wak~r~l~ 177 (323)
T 3nyb_A 121 PIIKF----VEP--HSGIHIAVSFERTNGIEAAKLIREWLDDTPGLRELVLIVKQFLHARRLN 177 (323)
T ss_dssp EEEEE----EET--TTTEEEEEESSCSSTTHHHHHHHHHHHSCTTHHHHHHHHHHHHHHTTCS
T ss_pred CEEEE----EEc--CCCceEEEEecCcHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHcCCC
Confidence 11111 101 1236888877654333222 22 12 23344556678899887764
No 80
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=94.48 E-value=0.0088 Score=47.92 Aligned_cols=48 Identities=21% Similarity=0.324 Sum_probs=35.8
Q ss_pred HHHHhhccCCCHHHHHHHHHhCCCCHHHHhhcc--Ccchhhhccccchhhh
Q 009303 294 ISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED--SLTHSQRLGLKYFDDI 342 (538)
Q Consensus 294 l~lf~~I~GvGpktA~~ly~~GirtledL~~~~--~L~~~q~~Glk~~ed~ 342 (538)
...|..|+||||++|++|++. +.|+++|.++. .|....++|.+..+.+
T Consensus 23 ~~~L~~I~gIG~~~A~~Ll~~-fgsl~~l~~a~~eeL~~i~GIG~~~a~~I 72 (78)
T 1kft_A 23 TSSLETIEGVGPKRRQMLLKY-MGGLQGLRNASVEEIAKVPGISQGLAEKI 72 (78)
T ss_dssp CCGGGGCTTCSSSHHHHHHHH-HSCHHHHHHCCHHHHTTSSSTTSHHHHHH
T ss_pred HHHHhcCCCCCHHHHHHHHHH-cCCHHHHHHCCHHHHHHCCCCCHHHHHHH
Confidence 334669999999999999997 44799988643 4666777776655544
No 81
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=94.40 E-value=0.019 Score=45.14 Aligned_cols=49 Identities=12% Similarity=0.204 Sum_probs=35.8
Q ss_pred HHHHHhhccCCCHHHHHHHHHhCCCCHHHHhhcc--Ccchhhhccccchhhh
Q 009303 293 TISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED--SLTHSQRLGLKYFDDI 342 (538)
Q Consensus 293 ~l~lf~~I~GvGpktA~~ly~~GirtledL~~~~--~L~~~q~~Glk~~ed~ 342 (538)
....|+.|+|||+++|++|++. +.|+++|..+. .|....++|.+..+.+
T Consensus 12 ~~~~L~~i~giG~~~a~~Ll~~-fgs~~~l~~a~~~~L~~i~Gig~~~a~~i 62 (75)
T 1x2i_A 12 QRLIVEGLPHVSATLARRLLKH-FGSVERVFTASVAELMKVEGIGEKIAKEI 62 (75)
T ss_dssp HHHHHTTSTTCCHHHHHHHHHH-HCSHHHHHHCCHHHHTTSTTCCHHHHHHH
T ss_pred HHHHHcCCCCCCHHHHHHHHHH-cCCHHHHHhCCHHHHhcCCCCCHHHHHHH
Confidence 4555779999999999999985 56788887543 4666677776554443
No 82
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=94.16 E-value=0.045 Score=52.38 Aligned_cols=51 Identities=29% Similarity=0.487 Sum_probs=38.2
Q ss_pred hhcCCCCCCHHHHHHHHHHHHhCCcchhHHHHhhchhHHHHHHhhccCCCHHHHHHHHHh
Q 009303 255 QVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK 314 (538)
Q Consensus 255 ~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~~ 314 (538)
.|.+|||||+..|..|.+-. |+ ++.+.+.. .+.|.+|+|||+++|+++++.
T Consensus 163 ~L~~i~gVg~~~a~~Ll~~f--gs---~~~l~~a~----~e~L~~v~GiG~~~a~~i~~~ 213 (219)
T 2bgw_A 163 ILQSFPGIGRRTAERILERF--GS---LERFFTAS----KAEISKVEGIGEKRAEEIKKI 213 (219)
T ss_dssp HHHTSTTCCHHHHHHHHHHH--SS---HHHHTTCC----HHHHHHSTTCCHHHHHHHHHH
T ss_pred HHhcCCCCCHHHHHHHHHHc--CC---HHHHHhCC----HHHHhhCCCCCHHHHHHHHHH
Confidence 47799999999999988754 33 44444322 234679999999999999863
No 83
>4b21_A Probable DNA-3-methyladenine glycosylase 2; hydrolase-DNA complex, helix-hairpin-helix; HET: BGC 3DR; 1.45A {Schizosaccharomyces pombe} PDB: 4b22_A* 4b23_A* 4b24_A*
Probab=93.96 E-value=0.08 Score=51.43 Aligned_cols=62 Identities=11% Similarity=0.118 Sum_probs=44.6
Q ss_pred hhhcCCCCCCHHHHHHHHHH---HHhCCcchhHHHHhhchhHHHHHHhhccCCCHHHHHHHHHhCC
Q 009303 254 DQVKGLPGIGKSMQDHIQEI---VTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGH 316 (538)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~Ei---l~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~~Gi 316 (538)
++|..+ |++..=+.-|.++ +..|.++.++.+..-....+++.|++|+||||+||..+--.++
T Consensus 107 e~Lr~~-Gl~~~Ka~~l~~~A~~~~~g~~p~l~~l~~~~~~~~~~~L~~l~GIG~~TA~~ill~al 171 (232)
T 4b21_A 107 ETLHEC-GFSKLKSQEIHIVAEAALNKQIPSKSEIEKMSEEELMESLSKIKGVKRWTIEMYSIFTL 171 (232)
T ss_dssp HHHHTT-TCCHHHHHHHHHHHHHHHTTCSCCHHHHHHSCHHHHHHHHTTSTTCCHHHHHHHHHHTS
T ss_pred HHHHHc-CCcHHHHHHHHHHHHHHHhCCCCCHHHHHcCCHHHHHHHHHhCCCcCHHHHHHHHHHhC
Confidence 445543 8887655555443 4568887777776655567899999999999999999876543
No 84
>2i5h_A Hypothetical protein AF1531; PFAM:DUF655, PSI-2, structural genomics, protein structure initiative; 1.74A {Archaeoglobus fulgidus} SCOP: e.71.1.1
Probab=93.78 E-value=0.025 Score=53.40 Aligned_cols=76 Identities=13% Similarity=0.276 Sum_probs=43.1
Q ss_pred HHHHHHHHhCCcchhHHHHhhchh-HHHHHHhhccCCCHHHHHHHHHh----CCCCHHHHhhc-cCc-chhhhccccchh
Q 009303 268 DHIQEIVTTGKLSKLEHFEKDEKV-RTISLFGEVWGIGPATAQKLYEK----GHRTLDDLKNE-DSL-THSQRLGLKYFD 340 (538)
Q Consensus 268 ~kI~Eil~tG~~~~le~l~~~~~~-~~l~lf~~I~GvGpktA~~ly~~----GirtledL~~~-~~L-~~~q~~Glk~~e 340 (538)
..|+++++...-..++-+....+. -.+..|..+|||||++|+++.+. .++|++||.+. .-+ ....-+|-+.++
T Consensus 104 ~~v~~iV~~~E~~fv~f~n~a~pITA~~~eL~~LpGIG~k~A~~IIeyRe~G~F~s~eDL~~RV~GIg~~~~~Ig~r~le 183 (205)
T 2i5h_A 104 YVIEHIIKQDEKKYVDFFNKADSITTRMHQLELLPGVGKKMMWAIIEERKKRPFESFEDIAQRVKGIQRPEKLIVSRIIY 183 (205)
T ss_dssp HHHHHHHHTTHHHHHHHHC--CCBCSSSBGGGGSTTCCHHHHHHHHHHHHHSCCCSHHHHHHHSTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHhchhhhhhhccccCCccCCHHHHhcCCCcCHHHHHHHHHHHhcCCCCCHHHHHHhcCCCCcchhHHHHHHHH
Confidence 445555554433333322212221 24455678999999999999852 69999999752 111 122335666665
Q ss_pred hhc
Q 009303 341 DIK 343 (538)
Q Consensus 341 d~~ 343 (538)
.+.
T Consensus 184 ~lk 186 (205)
T 2i5h_A 184 EIK 186 (205)
T ss_dssp HHH
T ss_pred Hhh
Confidence 553
No 85
>3mab_A Uncharacterized protein; NYSGXRC, PSI-2, structural genomics; 1.42A {Listeria monocytogenes} PDB: 3bqt_A
Probab=93.51 E-value=0.052 Score=45.23 Aligned_cols=31 Identities=29% Similarity=0.335 Sum_probs=28.3
Q ss_pred HHhhccCCCHHHHHHHHHhCCCCHHHHhhcc
Q 009303 296 LFGEVWGIGPATAQKLYEKGHRTLDDLKNED 326 (538)
Q Consensus 296 lf~~I~GvGpktA~~ly~~GirtledL~~~~ 326 (538)
-|+.+|.|||++++.|.+.||.|.+||+..+
T Consensus 5 ~L~dLPNig~~~e~~L~~~GI~t~~~Lr~~G 35 (93)
T 3mab_A 5 NLSELPNIGKVLEQDLIKAGIKTPVELKDVG 35 (93)
T ss_dssp CGGGSTTCCHHHHHHHHHTTCCSHHHHHHHC
T ss_pred HHhhCCCCCHHHHHHHHHcCCCCHHHHHhCC
Confidence 3678999999999999999999999999755
No 86
>3s6i_A DNA-3-methyladenine glycosylase 1; DNA glycosylase, DNA repair, helix-hairpin-helix (HHH), ABAS tetrahydrofuran (THF); HET: 3DR; 2.28A {Schizosaccharomyces pombe}
Probab=93.49 E-value=0.1 Score=50.43 Aligned_cols=56 Identities=20% Similarity=0.224 Sum_probs=41.8
Q ss_pred CCCHHHHHHHHH---HHHhCCcchhHHHHhhchhHHHHHHhhccCCCHHHHHHHHHhCC
Q 009303 261 GIGKSMQDHIQE---IVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGH 316 (538)
Q Consensus 261 gIG~~ia~kI~E---il~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~~Gi 316 (538)
|++..=+..|.+ .+..|.++.++.+..-....+++.|++|+||||+||..+--.++
T Consensus 102 G~~~rKa~~i~~~A~~~~~g~~p~~~~l~~~~~~e~~~~L~~l~GIG~~TA~~ill~~l 160 (228)
T 3s6i_A 102 GFSARKIDSLKSIAEATISGLIPTKEEAERLSNEELIERLTQIKGIGRWTVEMLLIFSL 160 (228)
T ss_dssp TCCHHHHHHHHHHHHHHHHTSSCCHHHHTTSCHHHHHHHHTTSTTCCHHHHHHHHHHTS
T ss_pred CCCHHHHHHHHHHHHHHHcCCCCChHHHhcCCHHHHHHHHHhCCCcCHHHHHHHHHHhC
Confidence 777764554444 34478887778777666667899999999999999999875433
No 87
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=93.41 E-value=0.049 Score=59.88 Aligned_cols=53 Identities=15% Similarity=0.277 Sum_probs=41.8
Q ss_pred chhhhcCCCCCCHHHHHHHHHHHHhCCcchhHHHHhhchhHHHHHHhhccCCCHHHHHHH
Q 009303 252 SADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKL 311 (538)
Q Consensus 252 ~~~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~l 311 (538)
...+|.+|||||.+.|.+|.+ . -+..+++|.+....+ .+++++|||+|||+++
T Consensus 95 ~~~~L~~v~GVGpk~A~~i~~---~-G~~s~edL~~a~~~~---~L~~~~GiG~Ktaq~I 147 (578)
T 2w9m_A 95 GLLDLLGVRGLGPKKIRSLWL---A-GIDSLERLREAAESG---ELAGLKGFGAKSAATI 147 (578)
T ss_dssp HHHHHTTSTTCCHHHHHHHHH---T-TCCSHHHHHHHHHHT---TTTTSTTCCHHHHHHH
T ss_pred HHHHHhCCCCcCHHHHHHHHH---c-CCCCHHHHHHHHhhC---ccccCCCCCHHHHHHH
Confidence 467899999999999999875 3 556777776532222 5779999999999999
No 88
>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ...
Probab=93.17 E-value=0.016 Score=56.69 Aligned_cols=54 Identities=24% Similarity=0.445 Sum_probs=0.0
Q ss_pred hhhhcCCCCCCHHHHHHHHHHHHhCCcchhHHHHhhchhHHHHHHhhccCCCHHHHHHHHHh
Q 009303 253 ADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK 314 (538)
Q Consensus 253 ~~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~~ 314 (538)
..+|..|||||++.+.+|.+. | +..++.|.+ ...+.|.+|+|||+++|+++++.
T Consensus 14 ~~~L~~IpGIGpk~a~~Ll~~---g-f~sve~L~~----a~~~eL~~v~GIG~ktAe~I~~~ 67 (241)
T 1vq8_Y 14 YTELTDISGVGPSKAESLREA---G-FESVEDVRG----ADQSALADVSGIGNALAARIKAD 67 (241)
T ss_dssp --------------------------------------------------------------
T ss_pred hhHHhcCCCCCHHHHHHHHHc---C-CCCHHHHHh----CCHHHHHhccCCCHHHHHHHHHH
Confidence 357899999999999998875 2 334555542 23455679999999999999764
No 89
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=93.12 E-value=0.096 Score=57.49 Aligned_cols=83 Identities=18% Similarity=0.292 Sum_probs=63.2
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHhCCcchhHHHHhhchhHHHHHHhhccCCCHHHHHHHHHhCCCCHHHHhhcc--Ccchh
Q 009303 254 DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED--SLTHS 331 (538)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~~GirtledL~~~~--~L~~~ 331 (538)
++|.+|+|+|++.+++|.+=++.-+-..+ .+.|--| +|++||.++|+.|-+ .+.|++.|.++. .|..+
T Consensus 480 ~~L~~l~g~geKsa~nL~~aIe~sk~~~l--------~r~l~aL-GI~~vG~~~a~~La~-~f~sl~~l~~a~~e~l~~i 549 (586)
T 4glx_A 480 GKLTGLERMGPKSAQNVVNALEKAKETTF--------ARFLYAL-GIREVGEATAAGLAA-YFGTLEALEAASIEELQKV 549 (586)
T ss_dssp HHHHTSTTCCHHHHHHHHHHHHHHTBCCH--------HHHHHHT-TCTTCCHHHHHHHHH-HHCSHHHHHHCCHHHHTTS
T ss_pred HHHhcccCccHHHHHHHHHHHHHHcCCCH--------HHHHHHc-CCCchhHHHHHHHHH-HcCCHHHHHccCHHHHhcC
Confidence 78999999999999998876654333333 3345556 999999999998865 466999998653 58888
Q ss_pred hhccccchhhhccCc
Q 009303 332 QRLGLKYFDDIKTRI 346 (538)
Q Consensus 332 q~~Glk~~ed~~~~i 346 (538)
.++|-...+.+..-+
T Consensus 550 ~giG~~~A~si~~ff 564 (586)
T 4glx_A 550 PDVGIVVASHVHNFF 564 (586)
T ss_dssp TTCCHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHH
Confidence 999987777766544
No 90
>1ylq_A Putative nucleotidyltransferase, hypothetical Pro AF0614; structural genomics, PSI, protein ST initiative; 2.02A {Archaeoglobus fulgidus} SCOP: d.218.1.5
Probab=92.82 E-value=0.27 Score=40.69 Aligned_cols=31 Identities=32% Similarity=0.362 Sum_probs=25.4
Q ss_pred cCCCeEEEecccccccCCcCC--CeeEEEecCC
Q 009303 365 VLPEVIILCGGSYRRGKASCG--DLDVVIMHPD 395 (538)
Q Consensus 365 ~~p~~~v~~~Gs~RRgke~~~--DVDiLit~~~ 395 (538)
..+...+.+-||+-||..+-+ ||||+|..++
T Consensus 14 ~~~~~~v~LFGS~ArG~~~~~~SDiDllV~~~~ 46 (96)
T 1ylq_A 14 DVQDAEIYLYGSVVEGDYSIGLSDIDVAIVSDV 46 (96)
T ss_dssp HCTTCEEEEESHHHHCCSSSCCCSEEEEEECGG
T ss_pred HcCCcEEEEEEEEEeCCCCCCCCceEEEEEeCC
Confidence 355578999999999998765 9999997654
No 91
>1u9l_A Transcription elongation protein NUSA; escherichia coli NUSA, phage lambda protein N, regulation of RNA binding, transcription antitermination, X-RAY crystallography; 1.90A {Escherichia coli} SCOP: a.60.4.2 PDB: 1wcl_A
Probab=92.77 E-value=0.056 Score=42.63 Aligned_cols=51 Identities=24% Similarity=0.307 Sum_probs=39.9
Q ss_pred HHHHHhhccCCCHHHHHHHHHhCCCCHHHHhhc--cCcchhhhccccchhhhc
Q 009303 293 TISLFGEVWGIGPATAQKLYEKGHRTLDDLKNE--DSLTHSQRLGLKYFDDIK 343 (538)
Q Consensus 293 ~l~lf~~I~GvGpktA~~ly~~GirtledL~~~--~~L~~~q~~Glk~~ed~~ 343 (538)
..++|+++.||+...|++|.+.||.|+++|--. ..|..+.||.-..-+++.
T Consensus 4 ~~~~f~~~lgI~e~~a~~L~~~Gf~tve~vA~~~~~eL~~I~G~dE~~a~~l~ 56 (70)
T 1u9l_A 4 AIDTFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALR 56 (70)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHTTCCCHHHHHHSCHHHHTTSTTCCHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHcCcCcHHHHHcCCHHHHhhccCCCHHHHHHHH
Confidence 568899999999999999999999999999843 246666666654444443
No 92
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=92.74 E-value=0.029 Score=53.77 Aligned_cols=52 Identities=17% Similarity=0.211 Sum_probs=40.6
Q ss_pred hHHHHHHhhccCCCHHHHHHHHHh-CCCCHHHH-hhc--cCcchhhhccccchhhh
Q 009303 291 VRTISLFGEVWGIGPATAQKLYEK-GHRTLDDL-KNE--DSLTHSQRLGLKYFDDI 342 (538)
Q Consensus 291 ~~~l~lf~~I~GvGpktA~~ly~~-GirtledL-~~~--~~L~~~q~~Glk~~ed~ 342 (538)
...+++|.+|+|||||+|..+... |..+|..- ... ..|+..+++|-|..+.|
T Consensus 84 r~lf~~L~sv~GIGpk~A~~Ils~~~~~~l~~aI~~~d~~~L~~vpGIG~KtA~rI 139 (212)
T 2ztd_A 84 RDLFLTLLSVSGVGPRLAMAALAVHDAPALRQVLADGNVAALTRVPGIGKRGAERM 139 (212)
T ss_dssp HHHHHHHHTSTTCCHHHHHHHHHHSCHHHHHHHHHTTCHHHHHTSTTCCHHHHHHH
T ss_pred HHHHHHhcCcCCcCHHHHHHHHHhCCHHHHHHHHHhCCHHHHhhCCCCCHHHHHHH
Confidence 457777889999999999999987 88888743 332 36889999998876543
No 93
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=92.63 E-value=0.099 Score=40.18 Aligned_cols=30 Identities=10% Similarity=0.226 Sum_probs=24.9
Q ss_pred HHHhhccCCCHHHHHHHHHhCCCCHHHHhhc
Q 009303 295 SLFGEVWGIGPATAQKLYEKGHRTLDDLKNE 325 (538)
Q Consensus 295 ~lf~~I~GvGpktA~~ly~~GirtledL~~~ 325 (538)
..|.+||||||++++.|.+ .+.|+++|.++
T Consensus 4 s~L~~IpGIG~kr~~~LL~-~Fgs~~~i~~A 33 (63)
T 2a1j_A 4 DFLLKMPGVNAKNCRSLMH-HVKNIAELAAL 33 (63)
T ss_dssp HHHHTSTTCCHHHHHHHHH-HCSSHHHHHTC
T ss_pred hHHHcCCCCCHHHHHHHHH-HcCCHHHHHHC
Confidence 4567999999999999996 56688888864
No 94
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=92.12 E-value=0.085 Score=57.94 Aligned_cols=55 Identities=22% Similarity=0.349 Sum_probs=38.1
Q ss_pred chhhhcCCCCCCHHHHHHHHHHHHhCCcchhHHHHhhchhHHHHHHhhccCCCHHHHHHHH
Q 009303 252 SADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY 312 (538)
Q Consensus 252 ~~~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly 312 (538)
...+|.+++|||+++|.+|-.-+-.-++..|...-.+.. ++++||||+|||+++.
T Consensus 91 ~~~~l~~v~GvGpk~A~~~~~~lg~~~~~~l~~a~~~~~------l~~~~GiG~k~a~~i~ 145 (575)
T 3b0x_A 91 GVLEVMEVPGVGPKTARLLYEGLGIDSLEKLKAALDRGD------LTRLKGFGPKRAERIR 145 (575)
T ss_dssp HHHHHHTSTTTCHHHHHHHHHTSCCCSHHHHHHHHHHTG------GGGSTTCCHHHHHHHH
T ss_pred HHHHHhcCCCcCHHHHHHHHHhcCCCCHHHHHHHHHcCC------cccCCCCCccHHHHHH
Confidence 357899999999999998865432233344433221111 6799999999999984
No 95
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=91.89 E-value=0.051 Score=51.29 Aligned_cols=51 Identities=27% Similarity=0.343 Sum_probs=37.2
Q ss_pred HHHHHHhhccCCCHHHHHHHHHh-CCCCHHH-Hhhc--cCcchhhhccccchhhh
Q 009303 292 RTISLFGEVWGIGPATAQKLYEK-GHRTLDD-LKNE--DSLTHSQRLGLKYFDDI 342 (538)
Q Consensus 292 ~~l~lf~~I~GvGpktA~~ly~~-Girtled-L~~~--~~L~~~q~~Glk~~ed~ 342 (538)
..+..|.+|+|||||+|..+... |-.++.+ +.++ ..|++.+|+|-+..+.+
T Consensus 69 ~~f~~L~~v~GIGpk~A~~iL~~f~~~~l~~aI~~~d~~~L~~vpGIG~K~A~rI 123 (191)
T 1ixr_A 69 ALFELLLSVSGVGPKVALALLSALPPRLLARALLEGDARLLTSASGVGRRLAERI 123 (191)
T ss_dssp HHHHHHHSSSCCCHHHHHHHHHHSCHHHHHHHHHTTCHHHHTTSTTCCHHHHHHH
T ss_pred HHHHHHhcCCCcCHHHHHHHHHhCChHHHHHHHHhCCHHHHHhCCCCCHHHHHHH
Confidence 45667779999999999999986 7766654 3333 25788888887765543
No 96
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=91.67 E-value=0.16 Score=41.35 Aligned_cols=34 Identities=9% Similarity=0.155 Sum_probs=28.2
Q ss_pred hHHHHHHhhccCCCHHHHHHHHHhCCCCHHHHhhc
Q 009303 291 VRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNE 325 (538)
Q Consensus 291 ~~~l~lf~~I~GvGpktA~~ly~~GirtledL~~~ 325 (538)
.....+|..|||||||+++.|.+ .+.|+++|.++
T Consensus 14 ~~~~s~L~~IpGIG~kr~~~LL~-~FgSl~~i~~A 47 (84)
T 1z00_B 14 PGPQDFLLKMPGVNAKNCRSLMH-HVKNIAELAAL 47 (84)
T ss_dssp HHHHHHHHTCSSCCHHHHHHHHH-HSSCHHHHHHS
T ss_pred ccHHHHHHhCCCCCHHHHHHHHH-HcCCHHHHHHC
Confidence 44667778999999999999996 67788888864
No 97
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=91.29 E-value=0.063 Score=51.11 Aligned_cols=51 Identities=16% Similarity=0.261 Sum_probs=37.7
Q ss_pred HHHHHHhhccCCCHHHHHHHHHh-CCCCHHH-Hhhc--cCcchhhhccccchhhh
Q 009303 292 RTISLFGEVWGIGPATAQKLYEK-GHRTLDD-LKNE--DSLTHSQRLGLKYFDDI 342 (538)
Q Consensus 292 ~~l~lf~~I~GvGpktA~~ly~~-Girtled-L~~~--~~L~~~q~~Glk~~ed~ 342 (538)
..++.|.+|+|||||+|..+... |-.+|-+ +.++ ..|++.+|+|-+..+.+
T Consensus 70 ~~f~~L~~V~GIGpk~A~~iL~~f~~~~l~~aI~~~d~~~L~~vpGIG~K~A~rI 124 (203)
T 1cuk_A 70 TLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKTAERL 124 (203)
T ss_dssp HHHHHHHHSSSCCHHHHHHHHHHSCHHHHHHHHHTTCHHHHHTSTTCCHHHHHHH
T ss_pred HHHHHHhcCCCcCHHHHHHHHhhCChHHHHHHHHhCCHHHHhhCCCCCHHHHHHH
Confidence 45667779999999999999986 7666654 4433 25788888887765544
No 98
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=91.29 E-value=0.055 Score=60.28 Aligned_cols=49 Identities=27% Similarity=0.392 Sum_probs=41.7
Q ss_pred hccCCCHHHHHHHHHh-CCCCHHHHhhc--cCcchhhhccccchhhhccCcC
Q 009303 299 EVWGIGPATAQKLYEK-GHRTLDDLKNE--DSLTHSQRLGLKYFDDIKTRIP 347 (538)
Q Consensus 299 ~I~GvGpktA~~ly~~-GirtledL~~~--~~L~~~q~~Glk~~ed~~~~i~ 347 (538)
.|.|+|+|++.+||+. +++|+.||... .+|..+.+||-|..+.|...|-
T Consensus 445 dI~GLG~k~i~~L~~~g~I~~~~DL~~L~~e~L~~l~g~G~Ksa~nLl~aIe 496 (667)
T 1dgs_A 445 DIEGLGEKLIERLLEKGLVRDVADLYHLRKEDLLGLERMGEKSAQNLLRQIE 496 (667)
T ss_dssp CCTTCCHHHHHHHHHTTSCSSGGGGGGGCCHHHHTTSSCCSTTHHHHHHHHH
T ss_pred CcCcCCHHHHHHHHHcCCCCCHHHHHhcCHHHHhcccccchhhHHHHHHHHH
Confidence 8999999999999999 68999999854 3577888999998888876553
No 99
>3fhg_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase, hydrolase; 1.90A {Sulfolobus solfataricus}
Probab=91.22 E-value=2.2 Score=40.29 Aligned_cols=124 Identities=15% Similarity=0.173 Sum_probs=72.9
Q ss_pred HHHHHHhcCCccccch--hhhcC-CC--CCC--HHHHHHHHHHHHh---CCcchhHHHHhhchhHHHHHHhhccCCCHHH
Q 009303 238 KAIPVIEKLPFKIESA--DQVKG-LP--GIG--KSMQDHIQEIVTT---GKLSKLEHFEKDEKVRTISLFGEVWGIGPAT 307 (538)
Q Consensus 238 rAa~~l~~l~~~i~~~--~~l~~-lp--gIG--~~ia~kI~Eil~t---G~~~~le~l~~~~~~~~l~lf~~I~GvGpkt 307 (538)
+|..+..+||..+... +++.+ |. |+| ..-|..|.++.+. +.-..++.+....+..+.+.|+++|||||+|
T Consensus 50 ~~~~~~~~L~~~l~~~~~e~l~~~ir~~G~g~~~~KA~~l~~~a~~~~~~~~~~l~~~~~~~~~~~~~~L~~lpGIG~kT 129 (207)
T 3fhg_A 50 SAYQALNCLGQKIYYANEEEIRNILKSCKYRFYNLKAKYIIMAREKVYGRLKEEIKPLADEDQQLARERLLNIKGIGMQE 129 (207)
T ss_dssp HHHHHHHHHGGGGGTCCHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHTTTHHHHHHHHHHHCHHHHHHHHTTSTTCCHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHhhhhHHHHhCCCHHHHHHHHHcCCCcCHHH
Confidence 3444555555555432 34332 33 433 3456666666551 1112366666566668999999999999999
Q ss_pred HHHHHHh-CCCCHHHHh-hcc-CcchhhhccccchhhhccCcCHHHHHHHHHHHHHHhhhc
Q 009303 308 AQKLYEK-GHRTLDDLK-NED-SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEV 365 (538)
Q Consensus 308 A~~ly~~-GirtledL~-~~~-~L~~~q~~Glk~~ed~~~~i~r~Ea~~i~~iv~~~~~~~ 365 (538)
|..+-.. |+. +.- -+. -..-++++|+-. +++...++..+..+++..+...++.+
T Consensus 130 A~~il~~~~~~---~~~~vD~~v~Ri~~rlg~~~-~~~~k~~~~k~y~~~~~~l~~~~~~~ 186 (207)
T 3fhg_A 130 ASHFLRNVGYF---DLAIIDRHIIDFMRRIGAIG-ETNVKQLSKSLYISFENILKSIASNL 186 (207)
T ss_dssp HHHHHHHTTCC---SSCCCCHHHHHHHHHTTSSC-CCCCSCCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCC---CcceecHHHHHHHHHcCCCC-ccccccCCHHHHHHHHHHHHHHHHHh
Confidence 9998775 662 222 111 123345566532 12667788888888877777665543
No 100
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=90.98 E-value=0.037 Score=61.70 Aligned_cols=49 Identities=29% Similarity=0.297 Sum_probs=40.8
Q ss_pred hhccCCCHHHHHHHHHh-CCCCHHHHhhc--cCcchhhhccccchhhhccCc
Q 009303 298 GEVWGIGPATAQKLYEK-GHRTLDDLKNE--DSLTHSQRLGLKYFDDIKTRI 346 (538)
Q Consensus 298 ~~I~GvGpktA~~ly~~-GirtledL~~~--~~L~~~q~~Glk~~ed~~~~i 346 (538)
++|+|+|+|++.+||+. +|+|++||... .+|..+.+||-|..+.+...|
T Consensus 449 ldI~GLG~k~i~~L~~~g~I~~~aDL~~L~~~~L~~l~gfG~Ksa~nLl~aI 500 (671)
T 2owo_A 449 MDVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGLERMGPKSAQNVVNAL 500 (671)
T ss_dssp TCCTTCCHHHHHHHHHTTCCSSGGGGGTCCHHHHHTSTTCCHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHcCCCCCHHHHHhhCHHHhhcccccchhHHHHHHHHH
Confidence 39999999999999999 57999999853 357778899988888777544
No 101
>2rff_A Putative nucleotidyltransferase; NP_343093.1, nucleotidyltransferase domain, structural genomics; HET: MSE; 1.40A {Sulfolobus solfataricus P2}
Probab=90.93 E-value=0.98 Score=38.46 Aligned_cols=41 Identities=17% Similarity=0.418 Sum_probs=30.0
Q ss_pred HHHHHHHHhhhcCCCe-EEEecccccccCC-cCCCeeEEEecCC
Q 009303 354 MERLLQKAGEEVLPEV-IILCGGSYRRGKA-SCGDLDVVIMHPD 395 (538)
Q Consensus 354 i~~iv~~~~~~~~p~~-~v~~~Gs~RRgke-~~~DVDiLit~~~ 395 (538)
+.+++..+... .|++ .+.+-||+-||.. ..+||||+|..++
T Consensus 19 l~~~~~~l~~~-~~~v~~v~LFGS~ArG~~~~~SDIDl~V~~~~ 61 (111)
T 2rff_A 19 AKEIVEEVASS-FPNLEEVYIFGSRARGDYLDTSDIDILFVFKG 61 (111)
T ss_dssp HHHHHHHHHHH-CTTEEEEEEESHHHHSCCCTTCCEEEEEEESS
T ss_pred HHHHHHHHHHH-cCCccEEEEEeeeecCCCCCCCCEEEEEEecC
Confidence 46666665543 4676 6889999999985 3589999996554
No 102
>1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B
Probab=90.80 E-value=0.12 Score=40.62 Aligned_cols=29 Identities=31% Similarity=0.384 Sum_probs=26.1
Q ss_pred HhhccCCCHHHHHHHHHhCCCCHHHHhhc
Q 009303 297 FGEVWGIGPATAQKLYEKGHRTLDDLKNE 325 (538)
Q Consensus 297 f~~I~GvGpktA~~ly~~GirtledL~~~ 325 (538)
+.+++|||+.++.+|-+.||.|+++|-..
T Consensus 9 l~~L~Gi~~~~~~kL~e~Gi~TvedlA~~ 37 (70)
T 1wcn_A 9 LLNLEGVDRDLAFKLAARGVCTLEDLAEQ 37 (70)
T ss_dssp HHSSTTCCHHHHHHHHTTTCCSHHHHHTS
T ss_pred HHHcCCCCHHHHHHHHHcCCCcHHHHHcC
Confidence 44889999999999999999999999853
No 103
>4gfj_A Topoisomerase V; helix-hairpin-helix, DNA repair enzyme, DNA B isomerase; 2.91A {Methanopyrus kandleri AV19}
Probab=90.65 E-value=0.16 Score=52.78 Aligned_cols=49 Identities=29% Similarity=0.484 Sum_probs=31.9
Q ss_pred HHHHhhccCCCHHHHHHHHHh-C-C-----CCHHHHhhccCcchhh--h-ccccchhhhc
Q 009303 294 ISLFGEVWGIGPATAQKLYEK-G-H-----RTLDDLKNEDSLTHSQ--R-LGLKYFDDIK 343 (538)
Q Consensus 294 l~lf~~I~GvGpktA~~ly~~-G-i-----rtledL~~~~~L~~~q--~-~Glk~~ed~~ 343 (538)
..++++|+||||.+|++|.+. | + -|.+||+.+| +...| . .||+....+.
T Consensus 467 eamLtAIaGIGp~tAeRLLEkFGSVe~Vm~AteDELRedG-IGekqarrI~gl~~l~~~~ 525 (685)
T 4gfj_A 467 YASLISIRGIDRERAERLLKKYGGYSKVREAGVEELREDG-LTDAQIRELKGLKTLESIV 525 (685)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHHTSHHHHHHSCHHHHHHTT-CCHHHHHHHHTCHHHHHHS
T ss_pred eeeeeccCCCCHHHHHHHHHHhcCHHHHHhCCHHHHHHcc-ccHHHHHHHhhHHHHHHHh
Confidence 567889999999999999987 5 2 3666665432 22221 1 3666655543
No 104
>3l41_A BRCT-containing protein 1; BRC1, BRCT domain, tandem BRCT repeat, phosphoserine binding domain, DNA repair, cell division, mitosis; HET: SEP; 1.45A {Schizosaccharomyces pombe} PDB: 3l40_A*
Probab=90.52 E-value=0.46 Score=45.57 Aligned_cols=84 Identities=11% Similarity=0.122 Sum_probs=52.4
Q ss_pred CCCCcCcEEEEecCCC-ChhHHHHHHHHHHhcCCEEEeecC----------CCccEEEEcCChH-HHHHHHHhhhcccCc
Q 009303 16 NGIFAGMRVFLVEKGV-QNRRLQIWRQKLVQMGATVEEKLS----------KKVTHVLAMDLEA-LLQQVSKQHLARFKG 83 (538)
Q Consensus 16 ~~~F~g~~iy~~~~~~-g~~R~~~l~~~~~~~G~~V~~~ls----------~~VTHVV~~~~~~-~~~~l~~~~~~~~~~ 83 (538)
..+|+|+.||+.+.-. ... .+.++.++..+||+|...-+ ++-.+||+...+. ....++...-....+
T Consensus 111 ~~LF~G~~f~it~~~~~~p~-~~~l~~iI~~~GG~v~~~p~~~~~~~~~~~~~~~~vis~~~d~~~~~~f~~~~~~~~~~ 189 (220)
T 3l41_A 111 PSLLEDYVVYLTSKTVAPEN-VPAVISIVKSNGGVCSTLNVYNKRLARHLEDGNVVLITCNEDSHIWTNFLDNASQNKTI 189 (220)
T ss_dssp SCTTTTSEEEEETTSSCGGG-HHHHHHHHHHTTCEEEEECSCCHHHHHHHHHCCEEEEECGGGHHHHTTTHHHHTTCTTE
T ss_pred chhhhheeEEEeccccCCCC-CceEEEEEecCCcEechhhHHHHHHHHhcccCCEEEEEeCCcchHHHHhhccccccceE
Confidence 6899999999987652 223 56789999999999998110 1124555543322 212222111111236
Q ss_pred cccccchHHHHHhcCcc
Q 009303 84 SVIRYQWLEDSLRLGEK 100 (538)
Q Consensus 84 ~lV~~~Wl~ecik~g~l 100 (538)
+||+.+|+.+|+=..++
T Consensus 190 ~i~~~e~ll~~il~q~l 206 (220)
T 3l41_A 190 FLQNYDWLIKTVLRQEI 206 (220)
T ss_dssp EEEEHHHHHHHHHHTCC
T ss_pred EEechhHHHHHHHHHHc
Confidence 79999999999986554
No 105
>2yg9_A DNA-3-methyladenine glycosidase II, putative; hydrolase, DNA repair; 1.95A {Deinococcus radiodurans} PDB: 2yg8_A
Probab=89.67 E-value=0.52 Score=45.35 Aligned_cols=54 Identities=19% Similarity=0.258 Sum_probs=35.9
Q ss_pred CCCHHHHHHHHHHH---HhCCcchhHHHHhhchhHHHHHHhhccCCCHHHHHHHHHhC
Q 009303 261 GIGKSMQDHIQEIV---TTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKG 315 (538)
Q Consensus 261 gIG~~ia~kI~Eil---~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~~G 315 (538)
|++..=++.|.++. ..|.+ .++.+..-....+++.|++|+||||+||..+--.+
T Consensus 110 G~~~~KA~~i~~lA~~~~~g~~-~l~~l~~~~~~e~~~~L~~l~GIG~~TA~~ill~~ 166 (225)
T 2yg9_A 110 GLSWAKVRTVQAAAAAAVSGQI-DFAHLSGQPDELVIAELVQLPGIGRWTAEMFLLFA 166 (225)
T ss_dssp TCCHHHHHHHHHHHHHHHTTSS-CGGGCTTSCHHHHHHHHHTSTTCCHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHHHHhCCc-CHHHHhcCCHHHHHHHHHcCCCCCHHHHHHHHHHh
Confidence 67665454444443 34664 34555444445678888999999999999887643
No 106
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=89.31 E-value=0.32 Score=37.24 Aligned_cols=49 Identities=16% Similarity=0.356 Sum_probs=34.2
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHhCCcchhHHHHhhchhHHHHHHhhccCCCHHH-HHHHHH
Q 009303 254 DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPAT-AQKLYE 313 (538)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpkt-A~~ly~ 313 (538)
+.|.+|||||++-+..+-. .-|.+. ++++- .++.|.+| +|++. |+++|+
T Consensus 4 s~L~~IpGIG~kr~~~LL~--~Fgs~~---~i~~A----s~eeL~~v--ig~~~~A~~I~~ 53 (63)
T 2a1j_A 4 DFLLKMPGVNAKNCRSLMH--HVKNIA---ELAAL----SQDELTSI--LGNAANAKQLYD 53 (63)
T ss_dssp HHHHTSTTCCHHHHHHHHH--HCSSHH---HHHTC----CHHHHHHH--HSCHHHHHHHHH
T ss_pred hHHHcCCCCCHHHHHHHHH--HcCCHH---HHHHC----CHHHHHHH--cCchHHHHHHHH
Confidence 4688999999998877653 344444 44432 34556667 88999 999997
No 107
>4dez_A POL IV 1, DNA polymerase IV 1; Y-family, transferase; HET: DNA; 2.60A {Mycobacterium smegmatis}
Probab=88.91 E-value=0.21 Score=51.30 Aligned_cols=30 Identities=40% Similarity=0.699 Sum_probs=26.7
Q ss_pred HhhccCCCHHHHHHHHHhCCCCHHHHhhcc
Q 009303 297 FGEVWGIGPATAQKLYEKGHRTLDDLKNED 326 (538)
Q Consensus 297 f~~I~GvGpktA~~ly~~GirtledL~~~~ 326 (538)
+..|||||++++++|.+.||+|+.||.+..
T Consensus 180 v~~l~GiG~~~~~~L~~~GI~Ti~dL~~~~ 209 (356)
T 4dez_A 180 PDALWGVGPKTTKKLAAMGITTVADLAVTD 209 (356)
T ss_dssp GGGSTTCCHHHHHHHHHTTCCSHHHHHTSC
T ss_pred HHHHcCCchhHHHHHHHcCCCeecccccCC
Confidence 358999999999999999999999998643
No 108
>1b22_A DNA repair protein RAD51; DNA binding, riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.60.4.1
Probab=88.75 E-value=0.15 Score=44.09 Aligned_cols=47 Identities=23% Similarity=0.315 Sum_probs=35.4
Q ss_pred HHHHHhhccCCCHHHHHHHHHhCCCCHHHHhhcc--Ccchhhhccccchh
Q 009303 293 TISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED--SLTHSQRLGLKYFD 340 (538)
Q Consensus 293 ~l~lf~~I~GvGpktA~~ly~~GirtledL~~~~--~L~~~q~~Glk~~e 340 (538)
.+..|.++ ||||.++++|.+.||.|+++|.... .|...+++|-...+
T Consensus 24 ~I~~L~~~-GIg~~~i~kL~eAG~~Tve~va~a~~~eL~~i~GIse~ka~ 72 (114)
T 1b22_A 24 PISRLEQC-GINANDVKKLEEAGFHTVEAVAYAPKKELINIKGISEAKAD 72 (114)
T ss_dssp CHHHHHHT-TCSHHHHHHHHTTCCSSGGGBTSSBHHHHHTTTTCSTTHHH
T ss_pred cHHHHHhc-CCCHHHHHHHHHcCcCcHHHHHhCCHHHHHHccCCCHHHHH
Confidence 34555455 9999999999999999999998543 47777777744433
No 109
>1q79_A Poly(A) polymerase alpha; mRNA processing, nucleotidyl transferase, transferase; HET: 3AT; 2.15A {Bos taurus} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1q78_A* 1f5a_A*
Probab=88.72 E-value=3.6 Score=44.39 Aligned_cols=52 Identities=25% Similarity=0.369 Sum_probs=39.0
Q ss_pred CCCeEEEecccccccCCc-CCCeeEEEecCCcchhhhhHHHHHHHHHHcCccc
Q 009303 366 LPEVIILCGGSYRRGKAS-CGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLR 417 (538)
Q Consensus 366 ~p~~~v~~~Gs~RRgke~-~~DVDiLit~~~~~~~~~~l~~vv~~L~~~g~l~ 417 (538)
.++++|.+.||||-|.-. .+|||+++..|.......+|..+.+.|++...+.
T Consensus 92 ~~~~~v~~FGS~~lG~~~p~SDID~~~v~p~~~~~~dff~~l~~~L~~~~~v~ 144 (514)
T 1q79_A 92 NVGGKIFTFGSYRLGVHTKGADIDALCVAPRHVDRSDFFTSFYDKLKLQEEVK 144 (514)
T ss_dssp TCBCEEEEEHHHHHTCCCTTCCEEEEEEECTTSCHHHHTTHHHHHHHTCTTEE
T ss_pred cCCceEEEeeeeccCCCCCCCceeEEEecCCcCCHHHHHHHHHHHHhcCccCc
Confidence 467899999999999753 5799999988765444567777778787755443
No 110
>2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain, helix turn helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.2.7
Probab=88.53 E-value=0.23 Score=41.42 Aligned_cols=43 Identities=19% Similarity=0.232 Sum_probs=30.1
Q ss_pred HHHHhhccCCCHHHHHHHHHh-----CCCCHHHHhhccCcchhhhccccchhhh
Q 009303 294 ISLFGEVWGIGPATAQKLYEK-----GHRTLDDLKNEDSLTHSQRLGLKYFDDI 342 (538)
Q Consensus 294 l~lf~~I~GvGpktA~~ly~~-----GirtledL~~~~~L~~~q~~Glk~~ed~ 342 (538)
...|..|+|||+++|+++++. .+.+++||.+ +.++|.+.++.|
T Consensus 39 ~~~L~~ipGIG~~~A~~Il~~r~~~g~f~s~edL~~------v~Gig~k~~~~l 86 (98)
T 2edu_A 39 ARDLRSLQRIGPKKAQLIVGWRELHGPFSQVEDLER------VEGITGKQMESF 86 (98)
T ss_dssp HHHHHHSTTCCHHHHHHHHHHHHHHCCCSSGGGGGG------STTCCHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHhcCCcCCHHHHHh------CCCCCHHHHHHH
Confidence 345669999999999999963 4778888643 345555555544
No 111
>3t7k_A RTT107, regulator of TY1 transposition protein 107; BRCT, DNA repair, phospho-peptide, protein binding; HET: SEP; 2.03A {Saccharomyces cerevisiae} PDB: 3t7j_A* 3t7i_A
Probab=88.28 E-value=0.32 Score=47.44 Aligned_cols=67 Identities=15% Similarity=0.204 Sum_probs=49.5
Q ss_pred HHHHhcCCEEEeecC--CCccEEEEcCChHHHHHHHHhhhcccC-ccccccchHHHHHhc---Cc------ccCcccccc
Q 009303 41 QKLVQMGATVEEKLS--KKVTHVLAMDLEALLQQVSKQHLARFK-GSVIRYQWLEDSLRL---GE------KVSEDLYRI 108 (538)
Q Consensus 41 ~~~~~~G~~V~~~ls--~~VTHVV~~~~~~~~~~l~~~~~~~~~-~~lV~~~Wl~ecik~---g~------lv~e~~y~l 108 (538)
+.+|..|-.|++..+ ..++|++|-.--|..+.|.. +...+ -.+|.++|+++|++. |+ +++.++|.+
T Consensus 41 ~~Lr~LGI~Iv~d~~~~~~~n~LiAPkilRT~KFL~s--La~~P~~~il~p~FI~~~Lk~ih~~~~~~~~~~l~~~dY~L 118 (256)
T 3t7k_A 41 EILNQLGIKIFDNIKETDKLNCIFAPKILRTEKFLKS--LSFEPLKFALKPEFIIDLLKQIHSKKDKLSQININLFDYEI 118 (256)
T ss_dssp HHHHHTTEEECSSCCGGGCCCEEECSSCCCBHHHHHH--TTSTTCCEEECTHHHHHHHHHHC-------CCCCCSSTTBC
T ss_pred HHHHHcCeEEEecCcccCCCCEEEcCchhhHHHHHHH--hccCccceEeCHHHHHHHHHHhhcCCcccccccCChhhccC
Confidence 788999999999985 37999999554444444442 22222 259999999999999 88 888899997
Q ss_pred c
Q 009303 109 K 109 (538)
Q Consensus 109 ~ 109 (538)
.
T Consensus 119 ~ 119 (256)
T 3t7k_A 119 N 119 (256)
T ss_dssp T
T ss_pred C
Confidence 4
No 112
>4e8f_A Poly(A) RNA polymerase protein CID1; beta polymerase-like nucleotidyl transferase, terminal uridi transferase, UTP, cytoplasmic; 2.60A {Schizosaccharomyces pombe 972h-} PDB: 4e7x_A* 4e80_A
Probab=88.17 E-value=0.84 Score=47.81 Aligned_cols=59 Identities=17% Similarity=0.250 Sum_probs=42.6
Q ss_pred HHHHHHHhhhcCCCeEEEecccccccCCc-CCCeeEEEecCCcchhhhhHHHHHHHHHHc
Q 009303 355 ERLLQKAGEEVLPEVIILCGGSYRRGKAS-CGDLDVVIMHPDRKSHKGFLSKYVKKLKEM 413 (538)
Q Consensus 355 ~~iv~~~~~~~~p~~~v~~~Gs~RRgke~-~~DVDiLit~~~~~~~~~~l~~vv~~L~~~ 413 (538)
-..|+.+++...|++.|.+.||++.|.-+ ..|||++|..+.......++.++.+.|++.
T Consensus 69 ~~~l~~~i~~~~p~~~v~~fGS~~~G~~~~~SDiDl~v~~~~~~~~~~~l~~l~~~L~~~ 128 (405)
T 4e8f_A 69 LDTLRLCLKRISPDAELVAFGSLESGLALKNSDMDLCVLMDSRVQSDTIALQFYEELIAE 128 (405)
T ss_dssp HHHHHHHHHHHCTTCEEEEESHHHHTCCBSSCCEEEEEECCC---CTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCCEEEEEeeccCCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHHhc
Confidence 33344455556899999999999999877 789999998876433344677777777776
No 113
>3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus}
Probab=88.08 E-value=0.078 Score=51.26 Aligned_cols=50 Identities=24% Similarity=0.515 Sum_probs=0.0
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHhCCcchhHHHHhhchhHHHHHHhhccCCCHHHHHHHHH
Q 009303 254 DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYE 313 (538)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~ 313 (538)
..|.+|||||+..+.++.+.. |++..+ .+ -..+.|.+| |||+++|+.+|+
T Consensus 173 s~L~~IpGIG~k~ak~Ll~~F--GSl~~i---~~----As~eeL~~V-GIG~~~A~~I~~ 222 (226)
T 3c65_A 173 SVLDDIPGVGEKRKKALLNYF--GSVKKM---KE----ATVEELQRA-NIPRAVAEKIYE 222 (226)
T ss_dssp ------------------------------------------------------------
T ss_pred ccccccCCCCHHHHHHHHHHh--CCHHHH---Hh----CCHHHHHHc-CCCHHHHHHHHH
Confidence 458999999999999887653 444443 32 134567799 999999999986
No 114
>2hhp_A Poly(A) polymerase; template-independent RNA polymerase, transferase; HET: FLC; 1.80A {Saccharomyces cerevisiae} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1fa0_A* 3c66_A* 2o1p_A 2q66_A*
Probab=87.85 E-value=5.4 Score=43.19 Aligned_cols=50 Identities=28% Similarity=0.434 Sum_probs=38.4
Q ss_pred CeEEEecccccccCC-cCCCeeEEEecCCcchhhhhHHHHHHHHHHcCccc
Q 009303 368 EVIILCGGSYRRGKA-SCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLR 417 (538)
Q Consensus 368 ~~~v~~~Gs~RRgke-~~~DVDiLit~~~~~~~~~~l~~vv~~L~~~g~l~ 417 (538)
+++|.+.||||-|.- -.+|||+++..|..-....+|..+.+.|++.+.+.
T Consensus 81 ~~~V~~FGSy~lG~~~p~SDID~~v~~p~~~~~~dff~~l~~~L~~~~~v~ 131 (530)
T 2hhp_A 81 GGKIFTYGSYRLGVHGPGSDIDTLVVVPKHVTREDFFTVFDSLLRERKELD 131 (530)
T ss_dssp BCEEEEEHHHHHTCCCTTCCEEEEEEECTTCCHHHHHHHHHHHHHTCTTEE
T ss_pred CceEEEecccccCCCCCCCceeEEEecCCcCCHHHHHHHHHHHHhcCCCCc
Confidence 789999999999975 35899999988865444567888888887765443
No 115
>3i0w_A 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8-OXOG, 8OXOG, glycosylase, cytosine, hydrolase,lyase/DNA complex; HET: 8OG; 1.73A {Clostridium acetobutylicum} PDB: 3i0x_A* 3f10_A* 3f0z_A
Probab=87.83 E-value=1.1 Score=44.75 Aligned_cols=58 Identities=16% Similarity=0.233 Sum_probs=38.3
Q ss_pred hhhcCCCCCCHHHHHHHHHH---HHhCCcchhHHHHhhchhHHHHHHhhccCCCHHHHHHHHHh
Q 009303 254 DQVKGLPGIGKSMQDHIQEI---VTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK 314 (538)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~Ei---l~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~~ 314 (538)
++|..+ |+|-+ ++-|.++ +..|.+ .++.+..-....+++.|++++||||+||...--.
T Consensus 170 e~L~~~-g~g~R-a~~I~~~A~~i~~g~~-~l~~l~~~~~~~~~~~L~~lpGIG~~TA~~ill~ 230 (290)
T 3i0w_A 170 KDFEEC-TAGFR-AKYLKDTVDRIYNGEL-NLEYIKSLNDNECHEELKKFMGVGPQVADCIMLF 230 (290)
T ss_dssp HHHHHT-TCGGG-HHHHHHHHHHHHTTSS-CHHHHHHSCHHHHHHHHTTSTTCCHHHHHHHHHH
T ss_pred HHHHHc-CCchH-HHHHHHHHHHHHhCCC-CHHHHhcCCHHHHHHHHHhCCCcCHHHHHHHHHH
Confidence 445553 67765 4444443 345654 3455554455668888999999999999988654
No 116
>3n0u_A Probable N-glycosylase/DNA lyase; structural genomics, ISFI, DNA repair, 8-oxoguanine, base EX repair, PSI-2, protein structure initiative; 1.50A {Thermotoga maritima}
Probab=87.73 E-value=0.27 Score=47.26 Aligned_cols=93 Identities=24% Similarity=0.319 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHh-CCcchhHHHHhhchhHHHHHHh-hccCCCHHHHHHHHHh-CCCCHHHHhh-c-cCcchhhhccccc
Q 009303 264 KSMQDHIQEIVTT-GKLSKLEHFEKDEKVRTISLFG-EVWGIGPATAQKLYEK-GHRTLDDLKN-E-DSLTHSQRLGLKY 338 (538)
Q Consensus 264 ~~ia~kI~Eil~t-G~~~~le~l~~~~~~~~l~lf~-~I~GvGpktA~~ly~~-GirtledL~~-~-~~L~~~q~~Glk~ 338 (538)
..=|..|.++.+. | .+.++.......+++.|+ +++|||||||..+... |.. +.-- + .-+.-+.++|+-.
T Consensus 100 ~~KA~~I~~~a~~ig---~l~~~~~~~~~~~r~~L~~~l~GVG~kTA~~vL~~~g~~---~~~~VDthv~Ri~~rlg~~~ 173 (219)
T 3n0u_A 100 QKRAEFIVENRKLLG---KLKNLVKGDPFQSREFLVRNAKGIGWKEASHFLRNTGVE---DLAILDKHVLRLMKRHGLIQ 173 (219)
T ss_dssp HHHHHHHHHHGGGTT---THHHHHHSCHHHHHHHHHHHSTTCCHHHHHHHHHTTTCC---SCCCCCHHHHHHHHHTTSCS
T ss_pred HHHHHHHHHHHHHHH---HHHHHhcCCcHHHHHHHHHhCCCCCHHHHHHHHHHcCCC---CeeeecHHHHHHHHHcCCCC
Confidence 4455555555542 2 234444445567899999 9999999999988764 552 1111 1 0122344556522
Q ss_pred hhhhccCcCHHHHHHHHHHHHHHhhh
Q 009303 339 FDDIKTRIPRHEVEQMERLLQKAGEE 364 (538)
Q Consensus 339 ~ed~~~~i~r~Ea~~i~~iv~~~~~~ 364 (538)
.+....+...-.++++.+.+.+.+
T Consensus 174 --~~~k~~t~k~y~~ie~~~~~~a~~ 197 (219)
T 3n0u_A 174 --EIPKGWSKKRYLYVEEILRKVAEA 197 (219)
T ss_dssp --SCCSSCCHHHHHHHHHHHHHHHHH
T ss_pred --cCcCcCCHHHHHHHHHHHHHHHHH
Confidence 234566666667777766665544
No 117
>3sgi_A DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tuberculosis}
Probab=87.35 E-value=0.11 Score=57.17 Aligned_cols=87 Identities=14% Similarity=0.166 Sum_probs=0.0
Q ss_pred hhhcCCCCC------CHHHHHHHHHHHHhCCcchhHHHHhhchhHHHHHHhhccCCCHHHHHHHHHhCCCCHHHHhhc--
Q 009303 254 DQVKGLPGI------GKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNE-- 325 (538)
Q Consensus 254 ~~l~~lpgI------G~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~~GirtledL~~~-- 325 (538)
++|.+|+|+ |++.++++.+-++.-+-..| .+.|--| +|+|||+++|+.|.+. +.|++.|.++
T Consensus 491 ~~L~~l~~~~~~~g~g~ksa~nLl~aIe~sk~~~l--------~r~L~aL-GIp~VG~~~ak~La~~-Fgsle~L~~As~ 560 (615)
T 3sgi_A 491 RDLLRTDLFRTKAGELSANGKRLLVNLDKAKAAPL--------WRVLVAL-SIRHVGPTAARALATE-FGSLDAIAAAST 560 (615)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHhhccccccccCccchHHHHHHHHHHHhcCCCH--------HHHHHHc-CCCCCCHHHHHHHHHH-cCCHHHHHhCCH
Confidence 567778855 57777777655553332222 3345556 9999999999999654 6799999865
Q ss_pred cCcchhhhccccchhhhccCcCHHH
Q 009303 326 DSLTHSQRLGLKYFDDIKTRIPRHE 350 (538)
Q Consensus 326 ~~L~~~q~~Glk~~ed~~~~i~r~E 350 (538)
..|..+.++|.+..+.+..-+.-++
T Consensus 561 eeL~~I~GIG~~~A~sI~~ff~~~~ 585 (615)
T 3sgi_A 561 DQLAAVEGVGPTIAAAVTEWFAVDW 585 (615)
T ss_dssp -------------------------
T ss_pred HHHhhCCCCCHHHHHHHHHHHcCHH
Confidence 3588888999888887776664443
No 118
>1no5_A Hypothetical protein HI0073; structural genomics, nucleotidyl transferase structure 2 function project, S2F, unknown function; 1.80A {Haemophilus influenzae} SCOP: d.218.1.5
Probab=87.23 E-value=2.2 Score=36.11 Aligned_cols=47 Identities=30% Similarity=0.521 Sum_probs=32.2
Q ss_pred cCHHHHHHHHHHHHHHhhhcCCCeEEEecccccccCC-cCCCeeEEEecCCc
Q 009303 346 IPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKA-SCGDLDVVIMHPDR 396 (538)
Q Consensus 346 i~r~Ea~~i~~iv~~~~~~~~p~~~v~~~Gs~RRgke-~~~DVDiLit~~~~ 396 (538)
++..+.+.+.+++++ ..+...+.+-||+-||.. ..+||||+|..+++
T Consensus 9 l~~~~~~~i~~~l~~----~~~v~~v~LFGS~ArG~~~~~SDIDl~V~~~~~ 56 (114)
T 1no5_A 9 IKSEELAIVKTILQQ----LVPDYTVWAFGSRVKGKAKKYSDLDLAIISEEP 56 (114)
T ss_dssp SCHHHHHHHHHHHHH----HCTTSEEEEEGGGTTTCCCTTCCEEEEEECSSC
T ss_pred CCHHHHHHHHHHHHH----hCCCCEEEEEeccCCCCCCCCCCeEEEEEeCCC
Confidence 444555556555554 234458999999999974 35899999976653
No 119
>1jx4_A DNA polymerase IV (family Y); protein-DNA complex, Y-family, transferase-D complex; HET: DNA MSE ADI; 1.70A {Sulfolobus solfataricus} SCOP: d.240.1.1 e.8.1.7 PDB: 1jxl_A* 1n48_A* 1n56_A* 1ryr_A* 1rys_A* 1s0m_A* 1s0n_A* 1s0o_A* 1s10_A* 1s97_A* 1s9f_A* 2ia6_A* 2ibk_A* 2r8g_A* 2r8h_A* 2r8i_A* 2rdj_A* 3fds_A* 3m9m_B* 3m9n_B* ...
Probab=86.60 E-value=0.22 Score=51.04 Aligned_cols=29 Identities=38% Similarity=0.396 Sum_probs=26.3
Q ss_pred HhhccCCCHHHHHHHHHhCCCCHHHHhhc
Q 009303 297 FGEVWGIGPATAQKLYEKGHRTLDDLKNE 325 (538)
Q Consensus 297 f~~I~GvGpktA~~ly~~GirtledL~~~ 325 (538)
+..+||||++++++|.+.||+|+.||.+.
T Consensus 180 v~~l~GiG~~~~~~L~~~Gi~t~~dL~~~ 208 (352)
T 1jx4_A 180 IADVPGIGNITAEKLKKLGINKLVDTLSI 208 (352)
T ss_dssp GGGSTTCCHHHHHHHHTTTCCBGGGGGSS
T ss_pred CCcccccCHHHHHHHHHcCCchHHHHHCC
Confidence 46899999999999988899999999864
No 120
>3osn_A DNA polymerase IOTA; hoogsteen base PAIR, protein-DNA complex, Y-family DNA polym translesion synthesis, nucleoside triphosphate; HET: DNA DOC 6OG TTP; 1.90A {Homo sapiens} PDB: 2dpj_A* 2fll_A* 2fln_A* 2flp_A* 3epg_A* 3epi_A* 2dpi_A* 3g6v_A* 3g6y_A* 3g6x_A* 3gv7_B* 3gv8_B* 3ngd_A* 3gv5_B* 3q8p_B* 3q8q_B* 3q8r_B* 3q8s_B* 4ebc_A* 4ebd_A* ...
Probab=86.08 E-value=0.35 Score=50.98 Aligned_cols=29 Identities=34% Similarity=0.376 Sum_probs=26.4
Q ss_pred HhhccCCCHHHHHHHHHhCCCCHHHHhhc
Q 009303 297 FGEVWGIGPATAQKLYEKGHRTLDDLKNE 325 (538)
Q Consensus 297 f~~I~GvGpktA~~ly~~GirtledL~~~ 325 (538)
+..|||||++++++|-+.||+|+.||.+.
T Consensus 236 v~~l~GIG~~t~~~L~~lGI~TigdLa~~ 264 (420)
T 3osn_A 236 IKEIPGIGYKTAKCLEALGINSVRDLQTF 264 (420)
T ss_dssp GGGSTTCCHHHHHHHHHTTCCSHHHHHHS
T ss_pred HHHccCCCHHHHHHHHHhCCCcHHHHhhC
Confidence 56899999999999999999999999864
No 121
>2jhn_A ALKA, 3-methyladenine DNA-glycosylase; DNA repair, N1-methyladenine, N3-methylcytosine, hyperthermophiles, hydrolase; HET: MBO MES; 1.8A {Archaeoglobus fulgidus} PDB: 2jhj_A
Probab=85.91 E-value=1 Score=45.11 Aligned_cols=59 Identities=19% Similarity=0.236 Sum_probs=43.0
Q ss_pred hhcCCCCCCHHHHHHHHHHHHhCCcchhHHHHhhchhHHHHHHhhccCCCHHHHHHHHHhCCC
Q 009303 255 QVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHR 317 (538)
Q Consensus 255 ~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~~Gir 317 (538)
+|..+ |++..=++-|.++.+.| .++.+..-....+++.|++|+||||+||..+--.++.
T Consensus 174 ~Lr~~-G~~~rKa~~i~~~A~~g---~l~~l~~~~~~e~~~~L~~lpGIG~~TA~~ill~~lg 232 (295)
T 2jhn_A 174 GLREC-GLSRRKAELIVEIAKEE---NLEELKEWGEEEAYEYLTSFKGIGRWTAELVLSIALG 232 (295)
T ss_dssp HHHHT-TCCHHHHHHHHHHHTCS---SGGGGGGSCHHHHHHHHHTSTTCCHHHHHHHHHHTTC
T ss_pred HHHHc-CCCHHHHHHHHHHHHCC---CHhhhhcCCHHHHHHHHhcCCCcCHHHHHHHHHHccC
Confidence 44443 78888788888888775 4444433334457888999999999999998776555
No 122
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=85.87 E-value=0.67 Score=52.54 Aligned_cols=51 Identities=16% Similarity=0.251 Sum_probs=42.0
Q ss_pred chhhhcCCCCCCHHHHHHHHHHHH-hCCcchhHHHHhhchhHHHHHHhhccCCCHHHHHHHHHh
Q 009303 252 SADQVKGLPGIGKSMQDHIQEIVT-TGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK 314 (538)
Q Consensus 252 ~~~~l~~lpgIG~~ia~kI~Eil~-tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~~ 314 (538)
+.++|..|||||+..|+.|.++.+ .|.+...++|. +|+|+|+++..++-..
T Consensus 506 s~~~L~~v~GiG~~~A~~Iv~yR~~~G~f~sr~~L~------------~V~giG~k~~ekl~~F 557 (785)
T 3bzc_A 506 SAALLARISGLNSTLAQNIVAHRDANGAFRTRDELK------------KVSRLGEKTFEQAAGF 557 (785)
T ss_dssp CHHHHHTSTTCCHHHHHHHHHHHHHHCCCSSGGGGG------------GSTTCCHHHHHHHGGG
T ss_pred CHHHHhhcCCCCHHHHHHHHHHHHhcCCCCCHHHHH------------hcCCCCHHHHHHhhhe
Confidence 457899999999999999999975 57887777653 7899999998887653
No 123
>1im4_A DBH; DNA polymerase PALM, thumb, fingers, helix-hairpin-helix, fidelity, processivity, transferase; 2.30A {Sulfolobus solfataricus} SCOP: e.8.1.7
Probab=85.61 E-value=0.28 Score=47.09 Aligned_cols=29 Identities=34% Similarity=0.542 Sum_probs=23.4
Q ss_pred HhhccCCCHHHHHHHHHhCCCCHHHHhhc
Q 009303 297 FGEVWGIGPATAQKLYEKGHRTLDDLKNE 325 (538)
Q Consensus 297 f~~I~GvGpktA~~ly~~GirtledL~~~ 325 (538)
+..+||||++++++|-+.||+|+.||.+.
T Consensus 186 v~~l~giG~~~~~~L~~~Gi~TigdL~~~ 214 (221)
T 1im4_A 186 IDEIPGIGSVLARRLNELGIQKLRDILSK 214 (221)
T ss_dssp GGGSTTCCHHHHHHHHHTTCCBTTC----
T ss_pred cccccCCCHHHHHHHHHcCCCcHHHHHCC
Confidence 46889999999999999999999999853
No 124
>3gqc_A DNA repair protein REV1; protein-DNA complex, DNA damage, DNA repair, DNA synthesis, binding, magnesium, metal-binding; HET: DNA DOC DCP; 2.50A {Homo sapiens}
Probab=85.39 E-value=0.39 Score=51.80 Aligned_cols=29 Identities=28% Similarity=0.354 Sum_probs=26.4
Q ss_pred HhhccCCCHHHHHHHHHhCCCCHHHHhhc
Q 009303 297 FGEVWGIGPATAQKLYEKGHRTLDDLKNE 325 (538)
Q Consensus 297 f~~I~GvGpktA~~ly~~GirtledL~~~ 325 (538)
+..+||||++++++|.+.||+|+.||.+.
T Consensus 317 V~~l~GIG~~t~~kL~~lGI~TigDLa~~ 345 (504)
T 3gqc_A 317 VTNLPGVGHSMESKLASLGIKTCGDLQYM 345 (504)
T ss_dssp GGGSTTCCHHHHHHHHHTTCCBHHHHTTS
T ss_pred hhHhhCcCHHHHHHHHHcCCCcHHHHHhc
Confidence 35889999999999999999999999864
No 125
>3c1y_A DNA integrity scanning protein DISA; DNA damage, DNA repair, DNA-binding, DNA binding protein; HET: DNA 2BA; 2.10A {Thermotoga maritima} PDB: 3c1z_A* 3c21_A* 3c23_A*
Probab=85.19 E-value=0.51 Score=48.81 Aligned_cols=53 Identities=21% Similarity=0.249 Sum_probs=31.6
Q ss_pred hhHHHHHHhhccCCCHHHHHHHHHhCCCCHHHHhhcc--Ccchhhhccccchhhhc
Q 009303 290 KVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED--SLTHSQRLGLKYFDDIK 343 (538)
Q Consensus 290 ~~~~l~lf~~I~GvGpktA~~ly~~GirtledL~~~~--~L~~~q~~Glk~~ed~~ 343 (538)
.+...+++.+||+|||+.|++|.+. |-||+.|.++. .|....|+|-+....|.
T Consensus 310 sprGyRiLs~IPrl~~~iae~Lv~~-FGsLq~Il~AS~eEL~~VeGIGe~rAr~Ir 364 (377)
T 3c1y_A 310 SARGYRLLKTVARIPLSIGYNVVRM-FKTLDQISKASVEDLKKVEGIGEKRARAIS 364 (377)
T ss_dssp CCCSHHHHHHTSCCCHHHHHHHHHH-HCSHHHHTTCCHHHHTTSTTCCHHHHHHHH
T ss_pred CchHHHHHhhCCCCCHHHHHHHHHH-hCCHHHHHhCCHHHHHhccCccHHHHHHHH
Confidence 3445667777777777777777764 33666666442 35555566655554443
No 126
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=85.07 E-value=0.4 Score=53.51 Aligned_cols=34 Identities=29% Similarity=0.514 Sum_probs=29.3
Q ss_pred chhHHHHHHhhccCCCHHHHHHHHHhCCCCHHHHh
Q 009303 289 EKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLK 323 (538)
Q Consensus 289 ~~~~~l~lf~~I~GvGpktA~~ly~~GirtledL~ 323 (538)
.+...+.|+ +|||||+.+|++||+.|++|++||.
T Consensus 652 v~~e~~~L~-qlp~i~~~rar~L~~~g~~s~~~l~ 685 (715)
T 2va8_A 652 IKEELLELV-QISGVGRKRARLLYNNGIKELGDVV 685 (715)
T ss_dssp CCGGGHHHH-TSTTCCHHHHHHHHHTTCCSHHHHH
T ss_pred CChhhcchh-hCCCCCHHHHHHHHHcCCCCHHHHh
Confidence 334456666 9999999999999999999999998
No 127
>1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B
Probab=84.88 E-value=1 Score=35.27 Aligned_cols=52 Identities=19% Similarity=0.373 Sum_probs=39.2
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHhCCcchhHHHHhhchhHHHHHHhhccCCCHHHHHHHHH
Q 009303 254 DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYE 313 (538)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~ 313 (538)
+++..|||||..++.+..| .| +.-+|.+-. ...+.|..|.|++..+|.++..
T Consensus 7 ~~l~~L~Gi~~~~~~kL~e---~G-i~TvedlA~----~~~~eL~~i~gise~kA~~ii~ 58 (70)
T 1wcn_A 7 DDLLNLEGVDRDLAFKLAA---RG-VCTLEDLAE----QGIDDLADIEGLTDEKAGALIM 58 (70)
T ss_dssp HHHHSSTTCCHHHHHHHHT---TT-CCSHHHHHT----SCHHHHHTSSSCCHHHHHHHHH
T ss_pred hHHHHcCCCCHHHHHHHHH---cC-CCcHHHHHc----CCHHHHHHccCCCHHHHHHHHH
Confidence 5689999999999887654 44 455666643 3455566899999999999975
No 128
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=84.54 E-value=0.26 Score=55.13 Aligned_cols=46 Identities=26% Similarity=0.498 Sum_probs=33.2
Q ss_pred HHHHHHhhccCCCHHHHHHHHHhCCCCHHHHhhcc--Ccchhhhccccc
Q 009303 292 RTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED--SLTHSQRLGLKY 338 (538)
Q Consensus 292 ~~l~lf~~I~GvGpktA~~ly~~GirtledL~~~~--~L~~~q~~Glk~ 338 (538)
..+.|+ +|||||..+|+++|+.|++|+.||.+.. .+..+.++|-+-
T Consensus 644 e~~~L~-qlp~v~~~rar~L~~~G~~s~~dl~~~~~~~l~~~~~~~~~i 691 (720)
T 2zj8_A 644 ELIPLM-QLPLVGRRRARALYNSGFRSIEDISQARPEELLKIEGIGVKT 691 (720)
T ss_dssp GGGGGT-TSTTCCHHHHHHHHTTTCCSHHHHHTCCHHHHHTSTTCCHHH
T ss_pred cchhhh-hCCCCCHHHHHHHHHcCCCCHHHHHhCCHHHHHHhHhHHHHH
Confidence 344445 9999999999999999999999998643 233334444333
No 129
>2h56_A DNA-3-methyladenine glycosidase; 10174367, EC 3.2.2.-, struc genomics, PSI-2, protein structure initiative, joint center structural genomics; 2.55A {Bacillus halodurans}
Probab=84.49 E-value=1.3 Score=42.73 Aligned_cols=61 Identities=21% Similarity=0.357 Sum_probs=38.1
Q ss_pred hhhcCCCCCCHHHHHHHHHHH---HhCCcchhHHHHhhchhHHHHHHhhccCCCHHHHHHHHHhCC
Q 009303 254 DQVKGLPGIGKSMQDHIQEIV---TTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGH 316 (538)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~Eil---~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~~Gi 316 (538)
++|..+ |++..=++.|.++. ..|.+ .++.+..-....+++.|++|+||||+||..+--.++
T Consensus 96 e~Lr~~-G~~~~KA~~I~~~A~~i~~~~~-~~~~l~~~p~~~~~~~L~~lpGIG~kTA~~ill~al 159 (233)
T 2h56_A 96 EALRQA-GVSKRKIEYIRHVCEHVESGRL-DFTELEGAEATTVIEKLTAIKGIGQWTAEMFMMFSL 159 (233)
T ss_dssp HHHHHT-TCCHHHHHHHHHHHHHHHTTSS-CHHHHTTSCHHHHHHHHHTSTTCCHHHHHHHHHHTT
T ss_pred HHHHHc-CCCHHHHHHHHHHHHHHHhCCC-CHHHHhcCCHHHHHHHHHhCCCcCHHHHHHHHHHhC
Confidence 344333 67775555555544 34542 344443333346888889999999999999876533
No 130
>3bq0_A POL IV, DBH, DNA polymerase IV; Y-family, lesion bypass; HET: DNA; 2.60A {Sulfolobus acidocaldarius} SCOP: d.240.1.1 e.8.1.7 PDB: 3bq1_A* 3bq2_A* 1k1q_A 1k1s_A
Probab=84.47 E-value=0.27 Score=50.44 Aligned_cols=29 Identities=34% Similarity=0.542 Sum_probs=26.2
Q ss_pred HhhccCCCHHHHHHHHHhCCCCHHHHhhc
Q 009303 297 FGEVWGIGPATAQKLYEKGHRTLDDLKNE 325 (538)
Q Consensus 297 f~~I~GvGpktA~~ly~~GirtledL~~~ 325 (538)
+..+||||++++++|.+.||+|+.||.+.
T Consensus 181 v~~l~GiG~~~~~~L~~~Gi~t~~dL~~~ 209 (354)
T 3bq0_A 181 IDEIPGIGSVLARRLNELGIQKLRDILSK 209 (354)
T ss_dssp STTSTTCCHHHHHHHTTTTCCBGGGGGGS
T ss_pred cccccCcCHHHHHHHHHcCCccHHHHhcC
Confidence 46889999999999988899999999864
No 131
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=83.56 E-value=0.52 Score=44.86 Aligned_cols=49 Identities=20% Similarity=0.413 Sum_probs=35.0
Q ss_pred HHHHHhhccCCCHHHHHHHHHhCCCCHHHHhhcc--Ccchhhhccccchhhh
Q 009303 293 TISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED--SLTHSQRLGLKYFDDI 342 (538)
Q Consensus 293 ~l~lf~~I~GvGpktA~~ly~~GirtledL~~~~--~L~~~q~~Glk~~ed~ 342 (538)
...+++.|+|||+++|+.|.+. +.|+++|.++. .|....++|.+..+.+
T Consensus 160 ~~~~L~~i~gVg~~~a~~Ll~~-fgs~~~l~~a~~e~L~~v~GiG~~~a~~i 210 (219)
T 2bgw_A 160 QLYILQSFPGIGRRTAERILER-FGSLERFFTASKAEISKVEGIGEKRAEEI 210 (219)
T ss_dssp HHHHHHTSTTCCHHHHHHHHHH-HSSHHHHTTCCHHHHHHSTTCCHHHHHHH
T ss_pred HHHHHhcCCCCCHHHHHHHHHH-cCCHHHHHhCCHHHHhhCCCCCHHHHHHH
Confidence 3445679999999999999986 44688887543 4666667776554443
No 132
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=83.54 E-value=0.89 Score=36.94 Aligned_cols=50 Identities=18% Similarity=0.346 Sum_probs=35.0
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHhCCcchhHHHHhhchhHHHHHHhhccCCCHHH-HHHHHHh
Q 009303 254 DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPAT-AQKLYEK 314 (538)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpkt-A~~ly~~ 314 (538)
..|..|||||++-+..+-. .-|.+..+ ++- .++.|..| ||.+. |+++|+-
T Consensus 18 s~L~~IpGIG~kr~~~LL~--~FgSl~~i---~~A----S~eEL~~v--ig~~~~A~~I~~~ 68 (84)
T 1z00_B 18 DFLLKMPGVNAKNCRSLMH--HVKNIAEL---AAL----SQDELTSI--LGNAANAKQLYDF 68 (84)
T ss_dssp HHHHTCSSCCHHHHHHHHH--HSSCHHHH---HHS----CHHHHHHH--HSCHHHHHHHHHH
T ss_pred HHHHhCCCCCHHHHHHHHH--HcCCHHHH---HHC----CHHHHHHH--hCchHHHHHHHHH
Confidence 4588999999998877653 44555444 332 34455567 88999 9999984
No 133
>2aq4_A DNA repair protein REV1; polymerase, PAD, N-digit, G-loop, transferase; HET: DNA DOC DCP; 2.32A {Saccharomyces cerevisiae} PDB: 3bjy_A* 3osp_A*
Probab=83.51 E-value=0.56 Score=49.51 Aligned_cols=29 Identities=24% Similarity=0.510 Sum_probs=26.8
Q ss_pred HhhccCCCHHHHHHHHH--hCCCCHHHHhhc
Q 009303 297 FGEVWGIGPATAQKLYE--KGHRTLDDLKNE 325 (538)
Q Consensus 297 f~~I~GvGpktA~~ly~--~GirtledL~~~ 325 (538)
+..+||||++++++|.+ .||+|+.||.+.
T Consensus 243 v~~l~GiG~~~~~~L~~~~~GI~ti~dL~~~ 273 (434)
T 2aq4_A 243 LDDLPGVGHSTLSRLESTFDSPHSLNDLRKR 273 (434)
T ss_dssp GGGSTTCCHHHHHHHHHHTTCCCSHHHHHHH
T ss_pred cccccCcCHHHHHHHHHhcCCceEHHHHHhc
Confidence 46899999999999999 899999999875
No 134
>2ikf_A RNA uridylyl transferase; tutase, nucleotidyltransferase, UTP-binding, RNA editing; HET: UTP; 2.00A {Trypanosoma brucei} PDB: 2nom_A* 2q0c_A* 2q0d_A* 2q0e_A* 2q0f_A* 2q0g_A*
Probab=83.43 E-value=7.1 Score=39.78 Aligned_cols=124 Identities=15% Similarity=0.123 Sum_probs=66.8
Q ss_pred HHHHHHHHhhhcCCCeEEEeccccc-ccCC-cCCCeeEEEecCCc----c-----------hhhhhHHHHHHHHHHcCcc
Q 009303 354 MERLLQKAGEEVLPEVIILCGGSYR-RGKA-SCGDLDVVIMHPDR----K-----------SHKGFLSKYVKKLKEMKFL 416 (538)
Q Consensus 354 i~~iv~~~~~~~~p~~~v~~~Gs~R-Rgke-~~~DVDiLit~~~~----~-----------~~~~~l~~vv~~L~~~g~l 416 (538)
++++|+. ..|+++|.+-|||+ -|-- -.+|||++|..|.. . ....+|.++-+.|++.+..
T Consensus 56 l~~~i~~----~~p~~~v~~FGS~~vtGl~lp~SDIDl~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~ 131 (353)
T 2ikf_A 56 VLDCVAA----VDPLMRLYTFGSTVVYGVHEKGSDVDFVVLNKTDVEDGKGGDAATQVAKGLQADILAKLARVIRQKHLS 131 (353)
T ss_dssp HHHHHHH----HCTTCEEEEESHHHHHSSCCTTCCEEEEEECHHHHHSTTCCCCCSHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHH----HCCCcEEEEecCccccCCCCCCcceeEEEeecccccccccccchhhhhhhhHHHHHHHHHHHHHhcCCC
Confidence 4555554 58999999999998 6653 46899999975421 0 0134666666777776654
Q ss_pred cceeeeccccCCCCCCcceeeeeeeecCCCccceeeeEEEecCchhHHHHHHh------hccHHHHHHHHHHHHHcCCcc
Q 009303 417 REDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAW------TGNDVLNRRLRLLAESKGYRL 490 (538)
Q Consensus 417 ~~~l~~s~~~~~~~~~~~~~~~g~~~~~~~~~~~RVDl~~~p~~~~~~aLl~~------TGS~~fnr~lR~~A~~kg~~L 490 (538)
....... + -...+-++ .. + ..+.+||-+....-...+-+.- --=+...+-++.||+.+|+.=
T Consensus 132 ~~v~~i~-~----ArVPIiK~----~~-~--~~i~~Dis~~n~~g~~~t~ll~~~~~~~p~~r~l~~~iK~wa~~r~l~~ 199 (353)
T 2ikf_A 132 WNVEEVR-R----TRVPVVRV----KG-G--GAVDFDITAYRRNGVRNSALLRAYFEQNPPCRWLSMSIKRWSKQTGLNA 199 (353)
T ss_dssp SEEEEEC-S----SSSCEEEE----EC-S--SSCEEEEEESCCHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTCBT
T ss_pred CceEEec-c----cceeEEEE----Ec-C--CCcEEEEEecCccHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCCCC
Confidence 3221110 0 01111111 11 1 2357888876543332222111 112344566788998877553
Q ss_pred CCC
Q 009303 491 DDT 493 (538)
Q Consensus 491 ~~~ 493 (538)
+..
T Consensus 200 ~~~ 202 (353)
T 2ikf_A 200 SVI 202 (353)
T ss_dssp TST
T ss_pred CCC
Confidence 333
No 135
>4fh3_A Poly(A) RNA polymerase protein CID1; nucleotidyltransferase, poly(U) polymerase, transferase; 2.00A {Schizosaccharomyces pombe} PDB: 4fh5_A* 4fhp_A* 4fhv_A* 4fhw_A* 4fhy_A* 4fhx_A* 4ep7_A*
Probab=82.84 E-value=2.6 Score=42.70 Aligned_cols=59 Identities=17% Similarity=0.260 Sum_probs=42.1
Q ss_pred HHHHHHhhhcCCCeEEEecccccccCCc-CCCeeEEEecCCcchhhhhHHHHHHHHHHcC
Q 009303 356 RLLQKAGEEVLPEVIILCGGSYRRGKAS-CGDLDVVIMHPDRKSHKGFLSKYVKKLKEMK 414 (538)
Q Consensus 356 ~iv~~~~~~~~p~~~v~~~Gs~RRgke~-~~DVDiLit~~~~~~~~~~l~~vv~~L~~~g 414 (538)
+.|+.+++...|+++|.+-|||+-|--+ .+|||++|..|.......++..+...+...+
T Consensus 42 ~~l~~~i~~~~p~~~v~~fGS~~~g~~~~~SDiDl~v~~~~~~~~~~~~~~~~~~~~~~~ 101 (349)
T 4fh3_A 42 DTLRLCLKRISPDAELVAFGSLESGLALKNSDMDLCVLMDSRVQSDTIALQFYEELIAEG 101 (349)
T ss_dssp HHHHHHHHTTCTTCEEEEESHHHHTCCBSSCCEEEEEECCTTSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCCEEEEEeeccCCCCCCCCCEEEEEecCCCCChHHHHHHHHHHHHhhc
Confidence 3344455557899999999999999755 4699999987766555555555666565554
No 136
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=82.82 E-value=0.21 Score=54.77 Aligned_cols=49 Identities=29% Similarity=0.338 Sum_probs=40.4
Q ss_pred hhccCCCHHHHHHHHHhC-CCCHHHHhh--ccCcchhhhccccchhhhccCc
Q 009303 298 GEVWGIGPATAQKLYEKG-HRTLDDLKN--EDSLTHSQRLGLKYFDDIKTRI 346 (538)
Q Consensus 298 ~~I~GvGpktA~~ly~~G-irtledL~~--~~~L~~~q~~Glk~~ed~~~~i 346 (538)
++|.|+|++++++||+.| ++++.||.. ...|..+.+||-|..+.+...|
T Consensus 449 mdI~GlG~~~i~~L~~~g~i~~~~Dly~L~~~~L~~l~g~geKsa~nL~~aI 500 (586)
T 4glx_A 449 MDVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGLERMGPKSAQNVVNAL 500 (586)
T ss_dssp TCCTTCCHHHHHHHHHTTCCSSGGGGGTCCHHHHHTSTTCCHHHHHHHHHHH
T ss_pred ccCCCcCHHHHHHHHhcCCCCCHHHHhCCCHHHHhcccCccHHHHHHHHHHH
Confidence 479999999999999997 599999974 3457778889988887776554
No 137
>4f4y_A POL IV, DNA polymerase IV; Y-family polymerase, transferase-DNA complex; HET: DNA DCP; 2.34A {Sulfolobus acidocaldarius} PDB: 3bq0_A* 3bq1_A* 3bq2_A* 4hyk_A* 1k1q_A 1k1s_A
Probab=81.27 E-value=0.32 Score=50.15 Aligned_cols=29 Identities=34% Similarity=0.542 Sum_probs=26.2
Q ss_pred HhhccCCCHHHHHHHHHhCCCCHHHHhhc
Q 009303 297 FGEVWGIGPATAQKLYEKGHRTLDDLKNE 325 (538)
Q Consensus 297 f~~I~GvGpktA~~ly~~GirtledL~~~ 325 (538)
+..+||||++++++|.+.||+|+.||.+.
T Consensus 181 v~~l~GiG~~~~~~L~~~GI~Ti~dL~~~ 209 (362)
T 4f4y_A 181 IDEIPGIGSVLARRLNELGIQKLRDILSK 209 (362)
T ss_dssp STTSTTCCSTTHHHHHHTTCCBGGGGTTS
T ss_pred hhhccCCCHHHHHHHHHcCCChHHHHhcC
Confidence 35799999999999999999999999854
No 138
>3vdp_A Recombination protein RECR; zinc finger, DNA repair, DNA binding; 2.45A {Thermoanaerobacter tengcongensis} PDB: 3vdu_A 3ve5_D
Probab=80.71 E-value=0.83 Score=43.42 Aligned_cols=21 Identities=43% Similarity=0.631 Sum_probs=18.8
Q ss_pred HHHHHHhhccCCCHHHHHHHH
Q 009303 292 RTISLFGEVWGIGPATAQKLY 312 (538)
Q Consensus 292 ~~l~lf~~I~GvGpktA~~ly 312 (538)
..++.|.++||||||+|+++-
T Consensus 23 ~LI~~l~~LPGIG~KsA~RlA 43 (212)
T 3vdp_A 23 KLIEELSKLPGIGPKTAQRLA 43 (212)
T ss_dssp HHHHHHHTSTTCCHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHH
Confidence 478889999999999999983
No 139
>3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus}
Probab=79.81 E-value=0.36 Score=46.59 Aligned_cols=47 Identities=15% Similarity=0.301 Sum_probs=0.0
Q ss_pred HHHhhccCCCHHHHHHHHHhCCCCHHHHhhcc--Ccchhhhccccchhhhc
Q 009303 295 SLFGEVWGIGPATAQKLYEKGHRTLDDLKNED--SLTHSQRLGLKYFDDIK 343 (538)
Q Consensus 295 ~lf~~I~GvGpktA~~ly~~GirtledL~~~~--~L~~~q~~Glk~~ed~~ 343 (538)
..|..|+|||+++|++|.+. +.|++.|.++. .|... ++|.+..+.+.
T Consensus 173 s~L~~IpGIG~k~ak~Ll~~-FGSl~~i~~As~eeL~~V-GIG~~~A~~I~ 221 (226)
T 3c65_A 173 SVLDDIPGVGEKRKKALLNY-FGSVKKMKEATVEELQRA-NIPRAVAEKIY 221 (226)
T ss_dssp ---------------------------------------------------
T ss_pred ccccccCCCCHHHHHHHHHH-hCCHHHHHhCCHHHHHHc-CCCHHHHHHHH
Confidence 45679999999999999885 66788887543 47777 88876665554
No 140
>3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular model mRNA splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A
Probab=79.16 E-value=4 Score=41.17 Aligned_cols=28 Identities=14% Similarity=0.081 Sum_probs=26.0
Q ss_pred HhhccCCCHHHHHHHHHhCCCCHHHHhh
Q 009303 297 FGEVWGIGPATAQKLYEKGHRTLDDLKN 324 (538)
Q Consensus 297 f~~I~GvGpktA~~ly~~GirtledL~~ 324 (538)
|.++||||+..++++++.|++|++||..
T Consensus 159 L~Qlp~i~~~~~~~l~~~~i~s~~~l~~ 186 (328)
T 3im1_A 159 LRQIPHFNNKILEKCKEINVETVYDIMA 186 (328)
T ss_dssp GGGSTTCCHHHHHHHHHTTCCSHHHHHH
T ss_pred eeCCCCCCHHHHHHHHhCCCCCHHHHhc
Confidence 4599999999999999999999999985
No 141
>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger, toprim, walker B ATP binding motif; 2.50A {Deinococcus radiodurans} SCOP: e.49.1.1 PDB: 2v1c_A
Probab=78.67 E-value=1.1 Score=43.12 Aligned_cols=22 Identities=41% Similarity=0.576 Sum_probs=19.4
Q ss_pred hHHHHHHhhccCCCHHHHHHHH
Q 009303 291 VRTISLFGEVWGIGPATAQKLY 312 (538)
Q Consensus 291 ~~~l~lf~~I~GvGpktA~~ly 312 (538)
...++.|.++||||||+|+++-
T Consensus 8 ~~LI~~l~~LPGIG~KSA~RlA 29 (228)
T 1vdd_A 8 VSLIRELSRLPGIGPKSAQRLA 29 (228)
T ss_dssp HHHHHHHHTSTTCCHHHHHHHH
T ss_pred HHHHHHHhHCCCCCHHHHHHHH
Confidence 3478889999999999999984
No 142
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=77.44 E-value=1.6 Score=41.87 Aligned_cols=31 Identities=32% Similarity=0.584 Sum_probs=25.2
Q ss_pred HHHHhhccCCCHHHHHHHHHhCCCCHHHHhhc
Q 009303 294 ISLFGEVWGIGPATAQKLYEKGHRTLDDLKNE 325 (538)
Q Consensus 294 l~lf~~I~GvGpktA~~ly~~GirtledL~~~ 325 (538)
-..|..|+|||+++|+.|.+. +.|++.|.++
T Consensus 167 ~s~LdgIpGIG~k~ak~Ll~~-FgSl~~i~~A 197 (220)
T 2nrt_A 167 RSVLDNVPGIGPIRKKKLIEH-FGSLENIRSA 197 (220)
T ss_dssp HHHHTTSTTCCHHHHHHHHHH-HCSHHHHHTS
T ss_pred cccccCCCCcCHHHHHHHHHH-cCCHHHHHhC
Confidence 345679999999999999996 3389998864
No 143
>1wot_A Putative minimal nucleotidyltransferase; alpha and beta, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: d.218.1.5
Probab=77.36 E-value=4.3 Score=33.33 Aligned_cols=43 Identities=21% Similarity=0.228 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhhhcCCCeEEEecccccccCCc-CCCeeEEEecCC
Q 009303 352 EQMERLLQKAGEEVLPEVIILCGGSYRRGKAS-CGDLDVVIMHPD 395 (538)
Q Consensus 352 ~~i~~iv~~~~~~~~p~~~v~~~Gs~RRgke~-~~DVDiLit~~~ 395 (538)
+.+.+.+..+++.. +-..+.+-|||-||..+ .+||||+|..++
T Consensus 10 ~~l~~~i~~l~~~~-~v~~v~LFGS~arG~~~~~SDiDl~V~~~~ 53 (98)
T 1wot_A 10 RARREAVLSLCARH-GAVRVRVFGSVARGEAREDSDLDLLVAFEE 53 (98)
T ss_dssp HHHHHHHHHHHHHH-TCSSCEECSHHHHTCCCTTCCCEEEECCCS
T ss_pred HHHHHHHHHHHHHc-CCcEEEEEccccCCCCCCCCCEEEEEEeCC
Confidence 34566666665443 32368899999999864 589999995544
No 144
>1exn_A 5'-exonuclease, 5'-nuclease; hydrolase; 2.50A {Enterobacteria phage T5} SCOP: a.60.7.1 c.120.1.2 PDB: 1ut5_A 1ut8_A 1xo1_A
Probab=77.19 E-value=1.2 Score=44.62 Aligned_cols=26 Identities=19% Similarity=0.322 Sum_probs=22.0
Q ss_pred hccCCCHHHHHHHHHhCCCCHHHHhhc
Q 009303 299 EVWGIGPATAQKLYEKGHRTLDDLKNE 325 (538)
Q Consensus 299 ~I~GvGpktA~~ly~~GirtledL~~~ 325 (538)
+|+|||||||.+|.++ +.|||.|.+.
T Consensus 207 GVpGIG~KTA~kLL~~-~gsle~i~~~ 232 (290)
T 1exn_A 207 GVEGIGAKRGYNIIRE-FGNVLDIIDQ 232 (290)
T ss_dssp CCTTCCHHHHHHHHHH-HCSHHHHHHH
T ss_pred CCCcCCHhHHHHHHHH-cCCHHHHHHH
Confidence 4899999999999986 4489998854
No 145
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=76.47 E-value=1.4 Score=48.98 Aligned_cols=41 Identities=27% Similarity=0.451 Sum_probs=32.7
Q ss_pred HHhhchhHHHHHHhhccCCCHHHHHHHHHhCCCCHHHHhhcc
Q 009303 285 FEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED 326 (538)
Q Consensus 285 l~~~~~~~~l~lf~~I~GvGpktA~~ly~~GirtledL~~~~ 326 (538)
+....+...+.|+ +|||||..+|+++|+.|++|+.||.+..
T Consensus 623 i~~gv~~~~~~L~-qlp~v~~~~ar~l~~~g~~s~~~l~~~~ 663 (702)
T 2p6r_A 623 IKHGVKEELLELV-RIRHIGRVRARKLYNAGIRNAEDIVRHR 663 (702)
T ss_dssp HHHTCCGGGHHHH-TSTTCCHHHHHHHHTTTCCSHHHHHHTH
T ss_pred HHcCCCcchHhhh-cCCCCCHHHHHHHHHcCCCCHHHHHhhh
Confidence 3334444556666 9999999999999999999999998543
No 146
>3pzp_A DNA polymerase kappa; DNA nucleotidyltransferase, DNA binding nucleotide binding M binding, nucleus; HET: DNA TTD DTP; 3.34A {Homo sapiens}
Probab=76.25 E-value=1.4 Score=47.54 Aligned_cols=29 Identities=31% Similarity=0.351 Sum_probs=26.1
Q ss_pred HhhccCCCHHHHHHHHHhCCCCHHHHhhc
Q 009303 297 FGEVWGIGPATAQKLYEKGHRTLDDLKNE 325 (538)
Q Consensus 297 f~~I~GvGpktA~~ly~~GirtledL~~~ 325 (538)
+..|||||++++++|-..||+|+.||.+.
T Consensus 340 V~kl~GIG~~t~~~L~~lGI~TigDL~~~ 368 (517)
T 3pzp_A 340 IRKVSGIGKVTEKMLKALGIITCTELYQQ 368 (517)
T ss_dssp GGGSTTCCHHHHHHHHHTTCCBHHHHHHH
T ss_pred hhhhccccHHHHHHHHHhCCCcHHHHHhh
Confidence 45799999999999999999999999863
No 147
>1kea_A Possible G-T mismatches repair enzyme; DNA repair, DNA glycosylase, DNA mismatch, methylation; 2.00A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.96.1.2
Probab=76.05 E-value=1.6 Score=41.77 Aligned_cols=23 Identities=17% Similarity=0.150 Sum_probs=18.9
Q ss_pred HHHHHHhhccCCCHHHHHHHHHh
Q 009303 292 RTISLFGEVWGIGPATAQKLYEK 314 (538)
Q Consensus 292 ~~l~lf~~I~GvGpktA~~ly~~ 314 (538)
..++.|++++||||+||..+--.
T Consensus 112 ~~~~~L~~lpGIG~~TA~~il~~ 134 (221)
T 1kea_A 112 RNRKAILDLPGVGKYTCAAVMCL 134 (221)
T ss_dssp SCHHHHHTSTTCCHHHHHHHHHH
T ss_pred HHHHHHHhCCCCcHHHHHHHHHH
Confidence 35666779999999999998765
No 148
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=75.94 E-value=1.5 Score=42.13 Aligned_cols=49 Identities=24% Similarity=0.507 Sum_probs=36.0
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHhCCcchhHHHHhhchhHHHHHHhhccCCCH-HHHHHHHH
Q 009303 254 DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGP-ATAQKLYE 313 (538)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGp-ktA~~ly~ 313 (538)
..|.+|||||+..+.++-... |+ ++.+.+- ..+.|.+| ||+ ++|+.+|+
T Consensus 168 s~LdgIpGIG~k~ak~Ll~~F--gS---l~~i~~A----s~EeL~~V--IG~~~~A~~I~~ 217 (220)
T 2nrt_A 168 SVLDNVPGIGPIRKKKLIEHF--GS---LENIRSA----SLEEIARV--IGSTEIARRVLD 217 (220)
T ss_dssp HHHTTSTTCCHHHHHHHHHHH--CS---HHHHHTS----CHHHHHHH--HTCHHHHHHHHH
T ss_pred ccccCCCCcCHHHHHHHHHHc--CC---HHHHHhC----CHHHHHHH--hChHHHHHHHHH
Confidence 358999999999999887743 44 4444432 23456678 999 99999986
No 149
>3q8k_A Flap endonuclease 1; helix-3 turn-helix, hydrophobic wedge, 3' flap binding site, hydrolase-DNA complex, DNA repair, replication; HET: DNA; 2.20A {Homo sapiens} PDB: 3q8l_A* 3q8m_A*
Probab=75.15 E-value=1.4 Score=44.96 Aligned_cols=25 Identities=28% Similarity=0.613 Sum_probs=21.9
Q ss_pred hccCCCHHHHHHHHHh-CCCCHHHHhhc
Q 009303 299 EVWGIGPATAQKLYEK-GHRTLDDLKNE 325 (538)
Q Consensus 299 ~I~GvGpktA~~ly~~-GirtledL~~~ 325 (538)
+|||||||||.+|.++ | ||+.+.+.
T Consensus 236 gipGiG~KtA~kll~~~g--sle~i~~~ 261 (341)
T 3q8k_A 236 SIRGIGPKRAVDLIQKHK--SIEEIVRR 261 (341)
T ss_dssp CCTTCCHHHHHHHHHHHC--SHHHHHHH
T ss_pred CCCCccHHHHHHHHHHcC--CHHHHHHH
Confidence 6999999999999997 5 89998753
No 150
>3huf_A DNA repair and telomere maintenance protein NBS1; NBS1, FHA domain, BRCT domain, phosphoprotein binding, phosp binding, DNA repair; HET: DNA TPO; 2.15A {Schizosaccharomyces pombe} PDB: 3hue_A* 3i0m_A* 3i0n_A*
Probab=74.86 E-value=2.7 Score=42.39 Aligned_cols=70 Identities=16% Similarity=0.223 Sum_probs=44.5
Q ss_pred CcCcEEEEecCCCChhHHHHHHHHHHhcCCEEEeec-CCCccEEEEcC--ChH-HHHHHHHhhhcccCccccccchHHHH
Q 009303 19 FAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKL-SKKVTHVLAMD--LEA-LLQQVSKQHLARFKGSVIRYQWLEDS 94 (538)
Q Consensus 19 F~g~~iy~~~~~~g~~R~~~l~~~~~~~G~~V~~~l-s~~VTHVV~~~--~~~-~~~~l~~~~~~~~~~~lV~~~Wl~ec 94 (538)
+..++++| + ...-+.-|++.+.+.|+.++ .+ ++..||||+.. ... ..+.+.. +-. ...||+.+|+.+.
T Consensus 113 W~P~Vl~~-S---ske~~~~L~~~L~~LGik~v-~~~~detTHlVm~krnT~KvTvK~L~A--LI~-gkPIV~~~Fl~al 184 (325)
T 3huf_A 113 WRSMCIQF-D---NPEMLSQWASNLNLLGIPTG-LRDSDATTHFVMNRQAGSSITVGTMYA--FLK-KTVIIDDSYLQYL 184 (325)
T ss_dssp ECCCCEEE-S---CHHHHHHHHHHHHTTTCCEE-SSCCTTCCEEECCCCCSSCCCHHHHHH--HHT-TCEEECHHHHHHH
T ss_pred EeeeEEEe-c---CHHHHHHHHHHHHHcCCEEE-EccCCCEEEEEEeccccccchHHHHHH--HHC-CCcEecHHHHHHH
Confidence 45566666 2 11123338899999999999 77 78899999953 211 1122221 112 2479999999996
Q ss_pred Hh
Q 009303 95 LR 96 (538)
Q Consensus 95 ik 96 (538)
.+
T Consensus 185 ~~ 186 (325)
T 3huf_A 185 ST 186 (325)
T ss_dssp TT
T ss_pred HH
Confidence 44
No 151
>1kg2_A A/G-specific adenine glycosylase; DNA repair, hydrolase; 1.20A {Escherichia coli} SCOP: a.96.1.2 PDB: 1kg3_A 1muy_A 1kg6_A 1kg5_A 1mun_A 1mud_A 1kg4_A 1weg_A 1wei_A* 1wef_A* 1kg7_A 1kqj_A
Probab=74.72 E-value=1.8 Score=41.49 Aligned_cols=22 Identities=23% Similarity=0.293 Sum_probs=18.4
Q ss_pred HHHHHhhccCCCHHHHHHHHHh
Q 009303 293 TISLFGEVWGIGPATAQKLYEK 314 (538)
Q Consensus 293 ~l~lf~~I~GvGpktA~~ly~~ 314 (538)
.++.|++++||||+||..+--.
T Consensus 107 ~~~~L~~lpGIG~~TA~~il~~ 128 (225)
T 1kg2_A 107 TFEEVAALPGVGRSTAGAILSL 128 (225)
T ss_dssp SHHHHHTSTTCCHHHHHHHHHH
T ss_pred HHHHHhcCCCCcHHHHHHHHHH
Confidence 5677779999999999988654
No 152
>3fhf_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase; 2.00A {Methanocaldococcus jannaschii} PDB: 3knt_A*
Probab=74.44 E-value=2.9 Score=39.83 Aligned_cols=94 Identities=18% Similarity=0.211 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHhCCcchhHHHHh-hchhHHHHHHh-hccCCCHHHHHHHHHh-CCCCHH--HHhhccCcchhhhccccch
Q 009303 265 SMQDHIQEIVTTGKLSKLEHFEK-DEKVRTISLFG-EVWGIGPATAQKLYEK-GHRTLD--DLKNEDSLTHSQRLGLKYF 339 (538)
Q Consensus 265 ~ia~kI~Eil~tG~~~~le~l~~-~~~~~~l~lf~-~I~GvGpktA~~ly~~-Girtle--dL~~~~~L~~~q~~Glk~~ 339 (538)
.=|..|.++.+-| .-++.+.. .......+.|+ ++||||||||.-+-.. |...+. |.- -..-++++|+-.
T Consensus 95 ~KA~~I~~~a~~~--~l~~~~~~~~~~~~~re~Ll~~LpGVG~KTA~~vL~~~g~~~~~vVDth---v~Ri~~RlG~~~- 168 (214)
T 3fhf_A 95 KRAEYIVLARRFK--NIKDIVESFENEKVAREFLVRNIKGIGYKEASHFLRNVGYDDVAIIDRH---ILRELYENNYID- 168 (214)
T ss_dssp HHHHHHHHHGGGC--CHHHHHHHSSSHHHHHHHHHHHSTTCCHHHHHHHHHHTTCCSCCCCCHH---HHHHHHHTTSSS-
T ss_pred HHHHHHHHHHHhh--HHHHHhcccCCcHHHHHHHHHhCCCCCHHHHHHHHHHcCCCCcccCcHH---HHHHHHHcCCCC-
Confidence 3455566655522 12344433 13456888898 9999999999986543 543221 111 122344556532
Q ss_pred hhhccCcCHHHHHHHHHHHHHHhhhc
Q 009303 340 DDIKTRIPRHEVEQMERLLQKAGEEV 365 (538)
Q Consensus 340 ed~~~~i~r~Ea~~i~~iv~~~~~~~ 365 (538)
.....+|.....+++..+...++.+
T Consensus 169 -~~~k~lt~~~y~e~~~~l~~~g~~~ 193 (214)
T 3fhf_A 169 -EIPKTLSRRKYLEIENILRDIGEEV 193 (214)
T ss_dssp -SCCSSCCHHHHHHHHHHHHHHHHHT
T ss_pred -CCCCcCCHHHHHHHHHHHHHHHHHH
Confidence 1235677777777777776665544
No 153
>3bqs_A Uncharacterized protein; 10114F, NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.42A {Listeria monocytogenes str} PDB: 3bqt_A 3mab_A
Probab=73.96 E-value=2.4 Score=35.02 Aligned_cols=56 Identities=16% Similarity=0.222 Sum_probs=37.1
Q ss_pred chhhhcCCCCCCHHHHHHHHHHHHhCCcchhHHHHhhchhHHHHHHhhccCCCHHHHHHHHH
Q 009303 252 SADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYE 313 (538)
Q Consensus 252 ~~~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~ 313 (538)
|+.+|+.||+||+++++...++ -+..+++|+..-+..+..-+... |..|-. ..||.
T Consensus 2 ~~~~L~~LPNiG~~~e~~L~~v----GI~s~e~L~~~Ga~~ay~rL~~~-~~~~c~-~~L~a 57 (93)
T 3bqs_A 2 SLANLSELPNIGKVLEQDLIKA----GIKTPVELKDVGSKEAFLRIWEN-DSSVCM-SELYA 57 (93)
T ss_dssp CCSCGGGSTTCCHHHHHHHHHT----TCCSHHHHHHHHHHHHHHHHHTT-CTTCCH-HHHHH
T ss_pred ChHHhhcCCCCCHHHHHHHHHc----CCCCHHHHHhCCHHHHHHHHHHH-CCCCCH-HHHHH
Confidence 5678999999999988765433 45667777765555555555444 555544 55554
No 154
>1t94_A Polymerase (DNA directed) kappa; replication, DNA repair, Y-family DNA polymerase, translesion DNA synthesis, lesion bypass; 2.40A {Homo sapiens} SCOP: d.240.1.1 e.8.1.7 PDB: 2oh2_A* 2w7o_A* 2w7p_A* 3hed_A* 3in5_A*
Probab=73.89 E-value=1.8 Score=45.87 Aligned_cols=29 Identities=31% Similarity=0.351 Sum_probs=26.0
Q ss_pred HhhccCCCHHHHHHHHHhCCCCHHHHhhc
Q 009303 297 FGEVWGIGPATAQKLYEKGHRTLDDLKNE 325 (538)
Q Consensus 297 f~~I~GvGpktA~~ly~~GirtledL~~~ 325 (538)
+..|||||++++++|-..||+|+.||.+.
T Consensus 284 v~~l~GiG~~~~~~L~~lGI~T~gdL~~~ 312 (459)
T 1t94_A 284 IRKVSGIGKVTEKMLKALGIITCTELYQQ 312 (459)
T ss_dssp GGGCTTSCHHHHHHHHHTTCCBHHHHHHT
T ss_pred HHhcCCcCHHHHHHHHHcCCCcHHHHHhh
Confidence 46899999999999988899999999863
No 155
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae}
Probab=73.55 E-value=2.5 Score=49.34 Aligned_cols=47 Identities=11% Similarity=0.017 Sum_probs=38.4
Q ss_pred hhhcCCCCCCHHHHHHHHHHH-H-hCCcchhHHHHhhchhHHHHHHhhccCCCHHHHHHHH
Q 009303 254 DQVKGLPGIGKSMQDHIQEIV-T-TGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY 312 (538)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~Eil-~-tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly 312 (538)
..|.-|+|||++.|+.|.++. + .|.+...++|. +|+|+|||+-.+.-
T Consensus 717 ~lL~~v~GlGp~kA~~Iv~~r~~~~G~f~sr~~L~------------~v~~iG~k~fe~~a 765 (1030)
T 3psf_A 717 SALKYISGFGKRKAIDFLQSLQRLNEPLLARQQLI------------THNILHKTIFMNSA 765 (1030)
T ss_dssp TTGGGSTTCCHHHHHHHHHHHHHTCSCCCCTTHHH------------HTTSSCHHHHHHHT
T ss_pred HHHhhCCCCCHHHHHHHHHHHHHhCCCCCCHHHHH------------hcCCccHHHHHhcc
Confidence 458899999999999999998 4 68887666543 68999999877664
No 156
>2q0z_X Protein Pro2281; SEC63, SEC, NESG, HR1979, structural genomics, translocase, northeast structural genomics consortium, PSI-2; 2.00A {Homo sapiens} SCOP: a.289.1.1 b.1.18.22
Probab=72.97 E-value=4.9 Score=40.69 Aligned_cols=28 Identities=11% Similarity=0.177 Sum_probs=26.0
Q ss_pred HhhccCCCHHHHHHHHHhCCCCHHHHhh
Q 009303 297 FGEVWGIGPATAQKLYEKGHRTLDDLKN 324 (538)
Q Consensus 297 f~~I~GvGpktA~~ly~~GirtledL~~ 324 (538)
|.++||+|+..++++++.|++|++||..
T Consensus 163 L~Qlp~i~~~~~~~l~~~~i~s~~~l~~ 190 (339)
T 2q0z_X 163 LKQLPHFTSEHIKRCTDKGVESVFDIME 190 (339)
T ss_dssp GGGSTTCCHHHHHHHHHTTCCSHHHHHH
T ss_pred eecCCCCCHHHHHHHHhcCCCCHHHHHh
Confidence 4599999999999999999999999985
No 157
>4ecq_A DNA polymerase ETA; transferase-DNA complex; HET: DNA DTP; 1.50A {Homo sapiens} PDB: 3mr2_A* 3mr4_A* 3mr5_A* 3si8_A* 4dl2_A* 4dl3_A* 4dl4_A* 4dl5_A* 4dl6_A* 4dl7_A* 3mr3_A* 4ecr_A* 4ecs_A* 4ect_A* 4ecu_A* 4ecv_A* 4ecw_A* 4ecx_A* 4ecy_A* 4ecz_A* ...
Probab=72.76 E-value=1.2 Score=47.06 Aligned_cols=29 Identities=10% Similarity=0.166 Sum_probs=24.5
Q ss_pred HhhccCCCHHHHHH-HHHhCCCCHHHHhhc
Q 009303 297 FGEVWGIGPATAQK-LYEKGHRTLDDLKNE 325 (538)
Q Consensus 297 f~~I~GvGpktA~~-ly~~GirtledL~~~ 325 (538)
+..|||||++++++ |...||+|+.||.+.
T Consensus 255 v~~l~GiG~~~~~~lL~~lGI~TigdLa~~ 284 (435)
T 4ecq_A 255 IRKIRSLGGKLGASVIEILGIEYMGELTQF 284 (435)
T ss_dssp GGGSTTCSSHHHHHHHHHHTCCBGGGGGGS
T ss_pred HHHhcCCCHHHHHHHHHHcCCCcHHHHhhC
Confidence 45899999999887 566799999999864
No 158
>2xhi_A N-glycosylase/DNA lyase; lyase-DNA complex, lyase/DNA complex, separation-OF-function helix-hairpin-helix, DNA repair; HET: 8OG; 1.55A {Homo sapiens} PDB: 1ko9_A 1lwy_A* 1hu0_A* 1lwv_A* 1lww_A* 2noe_A* 2noh_A* 2nol_A* 1n3c_A* 1fn7_A* 2noz_A* 1yqk_A 1yqr_A* 1yql_A* 1yqm_A* 2noi_A 1ebm_A* 1m3q_A* 1m3h_A* 1n39_A* ...
Probab=71.55 E-value=4.2 Score=41.78 Aligned_cols=54 Identities=15% Similarity=0.222 Sum_probs=34.9
Q ss_pred CCCHHHHHHHHHHHH---hCC--cchhHHHHhhchhHHHHHHhhccCCCHHHHHHHHHhC
Q 009303 261 GIGKSMQDHIQEIVT---TGK--LSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKG 315 (538)
Q Consensus 261 gIG~~ia~kI~Eil~---tG~--~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~~G 315 (538)
|+|.+ ++.|.++.+ .|. --.++.+..-....+++.|++|+||||+||..+--.+
T Consensus 215 Gl~~R-A~~I~~~A~~i~~~~~G~~~L~~l~~~~~~~~~~~L~~LpGIGp~TA~~ill~a 273 (360)
T 2xhi_A 215 GLGYR-ARYVSASARAILEEQGGLAWLQQLRESSYEEAHKALCILPGVGTCVADKICLMA 273 (360)
T ss_dssp TCTTH-HHHHHHHHHHHHHTTCTHHHHHGGGTSCHHHHHHHHTTSTTCCHHHHHHHHHHH
T ss_pred CCcHH-HHHHHHHHHHHHhccCCccCHHHHhcCCHHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence 55654 555554442 332 1235666543445688999999999999999986543
No 159
>3n5n_X A/G-specific adenine DNA glycosylase; alpha-helices, helix-hairpin-helix motif, iron-sulfur cluste hydrolase; 2.30A {Homo sapiens}
Probab=70.89 E-value=8.3 Score=38.35 Aligned_cols=21 Identities=19% Similarity=0.208 Sum_probs=16.8
Q ss_pred HHHHhh-ccCCCHHHHHHHHHh
Q 009303 294 ISLFGE-VWGIGPATAQKLYEK 314 (538)
Q Consensus 294 l~lf~~-I~GvGpktA~~ly~~ 314 (538)
++.|++ ++|||++||..+--.
T Consensus 127 ~~~Ll~~LpGIG~kTA~~iL~~ 148 (287)
T 3n5n_X 127 AETLQQLLPGVGRYTAGAIASI 148 (287)
T ss_dssp HHHHHHHSTTCCHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHH
Confidence 555667 999999999987654
No 160
>2abk_A Endonuclease III; DNA-repair, DNA glycosylase; 1.85A {Escherichia coli} SCOP: a.96.1.1
Probab=70.22 E-value=2.5 Score=39.93 Aligned_cols=23 Identities=17% Similarity=0.257 Sum_probs=18.9
Q ss_pred HHHHHHhhccCCCHHHHHHHHHh
Q 009303 292 RTISLFGEVWGIGPATAQKLYEK 314 (538)
Q Consensus 292 ~~l~lf~~I~GvGpktA~~ly~~ 314 (538)
..++.|++++||||+||..+--.
T Consensus 106 ~~~~~L~~l~GIG~~tA~~il~~ 128 (211)
T 2abk_A 106 EDRAALEALPGVGRKTANVVLNT 128 (211)
T ss_dssp SCHHHHHHSTTCCHHHHHHHHHH
T ss_pred HHHHHHHhCCCCChHHHHHHHHH
Confidence 35677779999999999988654
No 161
>3qe9_Y Exonuclease 1; exonuclease, hydrolase-DNA complex; HET: DNA; 2.51A {Homo sapiens} PDB: 3qeb_Z* 3qea_Z*
Probab=69.44 E-value=2.6 Score=43.26 Aligned_cols=27 Identities=22% Similarity=0.287 Sum_probs=23.7
Q ss_pred hhccCCCHHHHHHHHHh-CCCCHHHHhh
Q 009303 298 GEVWGIGPATAQKLYEK-GHRTLDDLKN 324 (538)
Q Consensus 298 ~~I~GvGpktA~~ly~~-GirtledL~~ 324 (538)
-+|+|||||||.+|.++ |-.||+.+.+
T Consensus 228 pgv~GiG~ktA~kli~~~~~~~l~~il~ 255 (352)
T 3qe9_Y 228 SSLRGIGLAKACKVLRLANNPDIVKVIK 255 (352)
T ss_dssp CCCTTCCHHHHHHHHHHCCCSCHHHHHT
T ss_pred CCCCCeeHHHHHHHHHHhCCCCHHHHHH
Confidence 47999999999999998 7678998875
No 162
>3sgi_A DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tuberculosis}
Probab=69.43 E-value=0.96 Score=49.80 Aligned_cols=65 Identities=11% Similarity=0.059 Sum_probs=0.0
Q ss_pred HHhhccCCCHHHHHHHHHhC-CCCHHHHhh--ccCcchhhhc------cccchhhhccCcCHHHHHHHHHHHHHH
Q 009303 296 LFGEVWGIGPATAQKLYEKG-HRTLDDLKN--EDSLTHSQRL------GLKYFDDIKTRIPRHEVEQMERLLQKA 361 (538)
Q Consensus 296 lf~~I~GvGpktA~~ly~~G-irtledL~~--~~~L~~~q~~------Glk~~ed~~~~i~r~Ea~~i~~iv~~~ 361 (538)
.| +|-|+|++++++|++.| |+++.||.. ...|..+.+| |-|..+.+...|-.+--..+..++-.+
T Consensus 459 am-dI~GlG~~~i~~L~~~g~i~~~aDly~L~~~~L~~l~~~~~~~g~g~ksa~nLl~aIe~sk~~~l~r~L~aL 532 (615)
T 3sgi_A 459 GL-DIEVLGYEAGVALLQAKVIADEGELFALTERDLLRTDLFRTKAGELSANGKRLLVNLDKAKAAPLWRVLVAL 532 (615)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred cc-CccccCHHHHHHHHHCCCcCCHHHHhhCCHHHHhhccccccccCccchHHHHHHHHHHHhcCCCHHHHHHHc
Confidence 35 89999999999999997 799999863 3446666655 567777777766554444455555443
No 163
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae}
Probab=68.66 E-value=3.6 Score=48.80 Aligned_cols=48 Identities=10% Similarity=0.011 Sum_probs=38.2
Q ss_pred hhhcCCCCCCHHHHHHHHHHH-H-hCCcchhHHHHhhchhHHHHHHhhccCCCHHHHHHHHH
Q 009303 254 DQVKGLPGIGKSMQDHIQEIV-T-TGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYE 313 (538)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~Eil-~-tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~ 313 (538)
..|.-|+|||++.|..|.++. + .|.+...++|. +|+|+|||+-.+.--
T Consensus 714 ~lL~~v~GlGp~kA~~Iv~~r~~~~G~f~sr~~L~------------~v~~iG~k~fe~~ag 763 (1219)
T 3psi_A 714 SALKYISGFGKRKAIDFLQSLQRLNEPLLARQQLI------------THNILHKTIFMNSAG 763 (1219)
T ss_dssp TTGGGSTTCCHHHHHHHHHHHHHHCSCCCCTTHHH------------HTTCSCHHHHHHHGG
T ss_pred HHHHhCCCCCHHHHHHHHHHHHHhCCCCCCHHHHh------------hCCCccHHHHHhccc
Confidence 457889999999999999998 4 68887666543 689999988766543
No 164
>1pu6_A 3-methyladenine DNA glycosylase; helix-hairpin-helix, base excision repair, hydrolase; HET: KCX; 1.64A {Helicobacter pylori} SCOP: a.96.1.5 PDB: 1pu7_A* 1pu8_A*
Probab=68.14 E-value=2.3 Score=40.53 Aligned_cols=25 Identities=20% Similarity=0.146 Sum_probs=20.4
Q ss_pred HHHHHHhhccCCCHHHHHHHHHhCC
Q 009303 292 RTISLFGEVWGIGPATAQKLYEKGH 316 (538)
Q Consensus 292 ~~l~lf~~I~GvGpktA~~ly~~Gi 316 (538)
.+++.|+++|||||+||..+--.++
T Consensus 118 ~~~~~L~~lpGIG~kTA~~il~~a~ 142 (218)
T 1pu6_A 118 VTREWLLDQKGIGKESADAILCYAC 142 (218)
T ss_dssp CCHHHHHTSTTCCHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCcCHHHHHHHHHHHC
Confidence 4677778999999999999876533
No 165
>1rxw_A Flap structure-specific endonuclease; helical clamp, helix-3 turn-helix, hydrophobic wedge, 3' FLA site, hydrolase-DNA complex; 2.00A {Archaeoglobus fulgidus} SCOP: a.60.7.1 c.120.1.2 PDB: 1rxv_A
Probab=67.35 E-value=2.7 Score=42.66 Aligned_cols=26 Identities=19% Similarity=0.217 Sum_probs=22.2
Q ss_pred hhccCCCHHHHHHHHHh-CCCCHHHHhhc
Q 009303 298 GEVWGIGPATAQKLYEK-GHRTLDDLKNE 325 (538)
Q Consensus 298 ~~I~GvGpktA~~ly~~-GirtledL~~~ 325 (538)
-+|+|||||||.+|.++ | |++.+.+.
T Consensus 238 pGv~GiG~KtA~kLl~~~g--sle~i~~~ 264 (336)
T 1rxw_A 238 EGVKGVGVKKALNYIKTYG--DIFRALKA 264 (336)
T ss_dssp CCCTTCCHHHHHHHHHHHS--SHHHHHHH
T ss_pred CCCCCcCHHHHHHHHHHcC--CHHHHHHh
Confidence 37999999999999997 5 79988754
No 166
>1ci4_A Protein (barrier-TO-autointegration factor (BAF) ); DNA binding protein, retroviral integration, preintegration complex; 1.90A {Homo sapiens} SCOP: a.60.5.1 PDB: 1qck_A 2bzf_A 2ezx_A 2ezy_A 2ezz_A 2odg_A
Probab=67.08 E-value=4.5 Score=33.08 Aligned_cols=29 Identities=28% Similarity=0.353 Sum_probs=25.4
Q ss_pred HHhhccCCCHHHHHHHHHhCCCCHHHHhh
Q 009303 296 LFGEVWGIGPATAQKLYEKGHRTLDDLKN 324 (538)
Q Consensus 296 lf~~I~GvGpktA~~ly~~GirtledL~~ 324 (538)
-.+.|+||||..+++|-++||..--.|..
T Consensus 19 ~V~evpGIG~~~~~~L~~~Gf~kAy~lLG 47 (89)
T 1ci4_A 19 PVGSLAGIGEVLGKKLEERGFDKAYVVLG 47 (89)
T ss_dssp CGGGSTTCCHHHHHHHHHTTCCSHHHHHH
T ss_pred CcccCCCcCHHHHHHHHHcCccHHHHHHH
Confidence 35699999999999999999999777763
No 167
>1a76_A Flap endonuclease-1 protein; 5'-3' EXO/endo nuclease, DNA replication, RTH, RAD27, DNA repair; 2.00A {Methanocaldococcus jannaschii} SCOP: a.60.7.1 c.120.1.2 PDB: 1a77_A
Probab=66.73 E-value=3 Score=42.15 Aligned_cols=25 Identities=32% Similarity=0.326 Sum_probs=22.5
Q ss_pred hccCCCHHHHHHHHHhCCCCHHHHh-hc
Q 009303 299 EVWGIGPATAQKLYEKGHRTLDDLK-NE 325 (538)
Q Consensus 299 ~I~GvGpktA~~ly~~GirtledL~-~~ 325 (538)
+|+|||||||.+|.++ .|++.+. +.
T Consensus 229 GvpGiG~ktA~kli~~--gsle~i~~~~ 254 (326)
T 1a76_A 229 GVKGIGFKRAYELVRS--GVAKDVLKKE 254 (326)
T ss_dssp TTTTCCHHHHHHHHHH--TCHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHc--CCHHHHHHHH
Confidence 7999999999999999 8999987 53
No 168
>1orn_A Endonuclease III; DNA repair, DNA glycosylase, [4Fe-4S] cluster, iron-sulfur cluster, hydrolase/DNA complex; HET: PED; 1.70A {Geobacillus stearothermophilus} SCOP: a.96.1.1 PDB: 1orp_A* 1p59_A*
Probab=66.31 E-value=4 Score=39.02 Aligned_cols=22 Identities=18% Similarity=0.152 Sum_probs=18.7
Q ss_pred HHHHHhhccCCCHHHHHHHHHh
Q 009303 293 TISLFGEVWGIGPATAQKLYEK 314 (538)
Q Consensus 293 ~l~lf~~I~GvGpktA~~ly~~ 314 (538)
.++.|++++||||+||..+--.
T Consensus 111 ~~~~L~~lpGIG~~TA~~il~~ 132 (226)
T 1orn_A 111 DRDELMKLPGVGRKTANVVVSV 132 (226)
T ss_dssp CHHHHTTSTTCCHHHHHHHHHH
T ss_pred HHHHHHHCCCccHHHHHHHHHH
Confidence 5677889999999999988754
No 169
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=64.94 E-value=1.7 Score=44.29 Aligned_cols=50 Identities=24% Similarity=0.311 Sum_probs=36.1
Q ss_pred HHHHhhccCCCHHHHHHHHHh---C-CCCHHHHhhcc------Ccchhhhccccchhhhc
Q 009303 294 ISLFGEVWGIGPATAQKLYEK---G-HRTLDDLKNED------SLTHSQRLGLKYFDDIK 343 (538)
Q Consensus 294 l~lf~~I~GvGpktA~~ly~~---G-irtledL~~~~------~L~~~q~~Glk~~ed~~ 343 (538)
+..+++|||||+++|+++.+- | +..+++|+++. .|..+.|+|.+....|-
T Consensus 56 ~~~l~~LpGIG~~~A~kI~E~l~tG~~~~le~l~~~~~~~~l~~l~~V~GiGpk~a~~l~ 115 (335)
T 2fmp_A 56 GAEAKKLPGVGTKIAEKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFV 115 (335)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHHHHSSCHHHHHHHHCHHHHHHHHHTTSTTCCHHHHHHHH
T ss_pred HHHHhcCCCCcHHHHHHHHHHHHhCCcHHHHHHHcccchhHHHHHhCCCCCCHHHHHHHH
Confidence 334679999999999999873 4 67788887543 26667777766665553
No 170
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=64.87 E-value=8.6 Score=47.49 Aligned_cols=29 Identities=10% Similarity=0.148 Sum_probs=26.7
Q ss_pred HhhccCCCHHHHHHHHHhCCCCHHHHhhc
Q 009303 297 FGEVWGIGPATAQKLYEKGHRTLDDLKNE 325 (538)
Q Consensus 297 f~~I~GvGpktA~~ly~~GirtledL~~~ 325 (538)
|.+|||||+.+|+++|+.||+|+.||.+.
T Consensus 1559 L~qip~i~~~~ar~l~~~gi~t~~dl~~~ 1587 (1724)
T 4f92_B 1559 LKQLPHFTSEHIKRCTDKGVESVFDIMEM 1587 (1724)
T ss_dssp GGGSTTCCHHHHHHHHHHTCCSHHHHHSS
T ss_pred EecCCCCCHHHHHHHHHCCCCCHHHHHhC
Confidence 46999999999999999999999999854
No 171
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=64.11 E-value=1.5 Score=44.71 Aligned_cols=50 Identities=24% Similarity=0.223 Sum_probs=35.3
Q ss_pred HHHHhhccCCCHHHHHHHHHh---C-CCCHHHHhhcc---C-cchhhhccccchhhhc
Q 009303 294 ISLFGEVWGIGPATAQKLYEK---G-HRTLDDLKNED---S-LTHSQRLGLKYFDDIK 343 (538)
Q Consensus 294 l~lf~~I~GvGpktA~~ly~~---G-irtledL~~~~---~-L~~~q~~Glk~~ed~~ 343 (538)
+..+++|||||+++|+++.+- | +..+++|+..- . |+...|+|.+....|-
T Consensus 56 ~~~l~~lpGIG~~~A~kI~E~l~tG~~~~le~l~~~~p~l~ll~~v~GiG~k~a~~l~ 113 (335)
T 2bcq_A 56 YQEACSIPGIGKRMAEKIIEILESGHLRKLDHISESVPVLELFSNIWGAGTKTAQMWY 113 (335)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHHHSSSCGGGGGCCTTHHHHHHHHTSTTCCHHHHHHHH
T ss_pred HHHHhcCCCccHHHHHHHHHHHHcCCchHHHHHhhhhHHHHHHhcCCCcCHHHHHHHH
Confidence 444779999999999999863 4 67888885332 1 3466777877666654
No 172
>3mab_A Uncharacterized protein; NYSGXRC, PSI-2, structural genomics; 1.42A {Listeria monocytogenes} PDB: 3bqt_A
Probab=63.22 E-value=3.2 Score=34.35 Aligned_cols=38 Identities=16% Similarity=0.281 Sum_probs=25.5
Q ss_pred chhhhcCCCCCCHHHHHHHHHHHHhCCcchhHHHHhhchhHH
Q 009303 252 SADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRT 293 (538)
Q Consensus 252 ~~~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~ 293 (538)
++.+|..||+||+.+.+...++ -+..+++|+.--+..+
T Consensus 2 sm~~L~dLPNig~~~e~~L~~~----GI~t~~~Lr~~Ga~~a 39 (93)
T 3mab_A 2 SLANLSELPNIGKVLEQDLIKA----GIKTPVELKDVGSKEA 39 (93)
T ss_dssp -CCCGGGSTTCCHHHHHHHHHT----TCCSHHHHHHHCHHHH
T ss_pred CHHHHhhCCCCCHHHHHHHHHc----CCCCHHHHHhCCHHHH
Confidence 5678999999999988765443 3566677765444443
No 173
>1z3e_B DNA-directed RNA polymerase alpha chain; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: a.60.3.1 PDB: 3ihq_B
Probab=63.07 E-value=8 Score=30.41 Aligned_cols=23 Identities=4% Similarity=0.297 Sum_probs=20.6
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHh
Q 009303 254 DQVKGLPGIGKSMQDHIQEIVTT 276 (538)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~Eil~t 276 (538)
+++.+++|+|++..+.|.+.|+.
T Consensus 41 ~dLlki~n~G~kSl~EI~~~L~~ 63 (73)
T 1z3e_B 41 EDMMKVRNLGRKSLEEVKAKLEE 63 (73)
T ss_dssp HHHHTSTTCCHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHH
Confidence 57899999999999999999863
No 174
>1kg2_A A/G-specific adenine glycosylase; DNA repair, hydrolase; 1.20A {Escherichia coli} SCOP: a.96.1.2 PDB: 1kg3_A 1muy_A 1kg6_A 1kg5_A 1mun_A 1mud_A 1kg4_A 1weg_A 1wei_A* 1wef_A* 1kg7_A 1kqj_A
Probab=62.76 E-value=9.6 Score=36.24 Aligned_cols=66 Identities=20% Similarity=0.233 Sum_probs=41.7
Q ss_pred hHHHHHHHHHHHh-cCCcccc-chhhhcCCCCCCHHHHHHHHHHHHhCCcchhHHHHhhchhHHHHHHhhccCCC
Q 009303 232 RSFSYYKAIPVIE-KLPFKIE-SADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIG 304 (538)
Q Consensus 232 r~~aY~rAa~~l~-~l~~~i~-~~~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvG 304 (538)
|+..-..+|..|. .+...+. ..++|..|||||..+|+.|--+.- |.-. +- ....+.+.+.+++|+.
T Consensus 85 kA~~l~~~a~~i~~~~~g~~p~~~~~L~~lpGIG~~TA~~il~~a~-~~~~----~~--vD~~v~Rv~~rl~~~~ 152 (225)
T 1kg2_A 85 RARNLHKAAQQVATLHGGKFPETFEEVAALPGVGRSTAGAILSLSL-GKHF----PI--LDGNVKRVLARCYAVS 152 (225)
T ss_dssp HHHHHHHHHHHHHHHSTTSCCCSHHHHHTSTTCCHHHHHHHHHHHH-CCSC----CC--CCHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHhCCCchHHHHHHhcCCCCcHHHHHHHHHHhC-CCCc----ce--eCHHHHHHHHHHcCCC
Confidence 6666667776654 3333333 468899999999999999876653 3321 11 2344666666666654
No 175
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae}
Probab=62.73 E-value=5.6 Score=46.43 Aligned_cols=32 Identities=16% Similarity=0.145 Sum_probs=26.8
Q ss_pred HHHHHhhccCCCHHHHHHHHH---h---CCCCHHHHhh
Q 009303 293 TISLFGEVWGIGPATAQKLYE---K---GHRTLDDLKN 324 (538)
Q Consensus 293 ~l~lf~~I~GvGpktA~~ly~---~---GirtledL~~ 324 (538)
...+|..|+||||++|+.+.+ + .+.|.+||.+
T Consensus 715 s~~lL~~v~GlGp~kA~~Iv~~r~~~~G~f~sr~~L~~ 752 (1030)
T 3psf_A 715 YASALKYISGFGKRKAIDFLQSLQRLNEPLLARQQLIT 752 (1030)
T ss_dssp HHTTGGGSTTCCHHHHHHHHHHHHHTCSCCCCTTHHHH
T ss_pred CHHHHhhCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHh
Confidence 567788999999999999952 2 5899999986
No 176
>2b4v_A RNA editing complex protein MP57; tbret2, TBMP57, terminal uridylyl transferase, editosome, transferase/RNA binding protein complex; 1.80A {Trypanosoma brucei} SCOP: a.160.1.4 d.218.1.10 PDB: 2b51_A* 2b56_A*
Probab=62.59 E-value=11 Score=40.00 Aligned_cols=59 Identities=25% Similarity=0.366 Sum_probs=39.3
Q ss_pred HHHHHHHhhhcCCCeEEEecccc-cccCC-cCCCeeEEEecCCcch-h-hh--hHHHHHHHHHHc
Q 009303 355 ERLLQKAGEEVLPEVIILCGGSY-RRGKA-SCGDLDVVIMHPDRKS-H-KG--FLSKYVKKLKEM 413 (538)
Q Consensus 355 ~~iv~~~~~~~~p~~~v~~~Gs~-RRgke-~~~DVDiLit~~~~~~-~-~~--~l~~vv~~L~~~ 413 (538)
.+-++.+++.+.|++.|.+.||| +-|.- -++|||+++..++... . .. .+.++...|+..
T Consensus 45 ~~~l~~~v~~~~p~a~v~~FGS~v~~Gl~lp~SDiDl~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 109 (468)
T 2b4v_A 45 QQQLQGLADKWTPDAKVYCCGSMVTYGQMERGSDLDLACMFDDPYPSHEVQAKRTDKLRTVIKRY 109 (468)
T ss_dssp HHHHHHHHHHHCTTCEEEEETHHHHHSSCBTTCCEEEEEECSSSSCCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCCCcEEEEeeCchhcCCCCCCCceeEEEecCCCCccchhhHHHHHHHHHHHHHh
Confidence 33445555557899999999999 66774 5899999998764321 1 11 123456667666
No 177
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=61.85 E-value=2.3 Score=43.77 Aligned_cols=47 Identities=13% Similarity=0.172 Sum_probs=35.4
Q ss_pred HhhccCCCHHHHHHHHHh---C-CCCHHHHhhcc------Ccchhhhccccchhhhc
Q 009303 297 FGEVWGIGPATAQKLYEK---G-HRTLDDLKNED------SLTHSQRLGLKYFDDIK 343 (538)
Q Consensus 297 f~~I~GvGpktA~~ly~~---G-irtledL~~~~------~L~~~q~~Glk~~ed~~ 343 (538)
+++|||||+++|+++.+- | +..+++|+++. .|..+.|+|.+....|-
T Consensus 63 l~~lpGIG~~~A~kI~E~l~tG~~~~le~L~~d~~~~~l~~l~~I~GvG~kta~~l~ 119 (360)
T 2ihm_A 63 LHGLPYFGEHSTRVIQELLEHGTCEEVKQVRCSERYQTMKLFTQVFGVGVKTANRWY 119 (360)
T ss_dssp GTTCTTCCHHHHHHHHHHHHHSCCHHHHHHHHSHHHHHHHHHHTSTTCCHHHHHHHH
T ss_pred HhcCCCCCHHHHHHHHHHHHcCChHHHHHHhcccchHHHHHHhCCCCCCHHHHHHHH
Confidence 679999999999998863 4 68888887532 36677788877666553
No 178
>1kny_A Kntase, kanamycin nucleotidyltransferase; antibiotic resistance, plasmid; HET: APC KAN; 2.50A {Staphylococcus aureus} SCOP: a.24.16.1 d.218.1.1 PDB: 1kan_A
Probab=60.96 E-value=9.2 Score=36.99 Aligned_cols=51 Identities=16% Similarity=0.210 Sum_probs=33.9
Q ss_pred CcCHHHHHH-HHHHHHHHhhhcCCCe-EEEecccccccCCc-CCCeeEEEecCC
Q 009303 345 RIPRHEVEQ-MERLLQKAGEEVLPEV-IILCGGSYRRGKAS-CGDLDVVIMHPD 395 (538)
Q Consensus 345 ~i~r~Ea~~-i~~iv~~~~~~~~p~~-~v~~~Gs~RRgke~-~~DVDiLit~~~ 395 (538)
.|.++++.. +.+++..+....-..+ .+.+-||+-||..+ -.||||+|...+
T Consensus 6 ~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~lfGS~arg~~~~~SDiD~~v~~~~ 59 (253)
T 1kny_A 6 IMTREERMKIVHEIKERILDKYGDDVKAIGVYGSLGRQTDGPYSDIEMMCVMST 59 (253)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHGGGEEEEEEEHHHHHTCCCTTCCEEEEEEESS
T ss_pred CCCHHHHHHHHHHHHHHHHHHcCCCeeEEEEEccccCCCCCCCCCeeEEEEecC
Confidence 355666554 4556555543332235 68899999999875 489999996544
No 179
>2izo_A FEN1, flap structure-specific endonuclease; hydrolase, DNA repair, DNA-binding, endonuclease, metal-BIND excision repair, DNA replication, PCNA; HET: DNA; 2.9A {Sulfolobus solfataricus}
Probab=60.71 E-value=2.9 Score=42.63 Aligned_cols=25 Identities=28% Similarity=0.470 Sum_probs=17.3
Q ss_pred hccCCCHHHHHHHHHhCCCCHHHHhh
Q 009303 299 EVWGIGPATAQKLYEKGHRTLDDLKN 324 (538)
Q Consensus 299 ~I~GvGpktA~~ly~~GirtledL~~ 324 (538)
+|+|||||||.+|.++- .|++.+.+
T Consensus 238 Gv~GIG~KtA~kLi~~~-gsle~i~~ 262 (346)
T 2izo_A 238 GIRGIGPERALKIIKKY-GKIEKAME 262 (346)
T ss_dssp CSTTCCHHHHHHHHHHS-SCC-----
T ss_pred CCCCcCHHHHHHHHHHc-CCHHHHHH
Confidence 79999999999999972 36777764
No 180
>1ul1_X Flap endonuclease-1; protein complex, DNA-binding protein, flap DNA, flap endonuclease, sliding clamp, DNA clamp; 2.90A {Homo sapiens} SCOP: a.60.7.1 c.120.1.2
Probab=60.53 E-value=4.4 Score=41.88 Aligned_cols=32 Identities=25% Similarity=0.605 Sum_probs=25.2
Q ss_pred HHHHHhh------ccCCCHHHHHHHHHhCCCCHHHHhhc
Q 009303 293 TISLFGE------VWGIGPATAQKLYEKGHRTLDDLKNE 325 (538)
Q Consensus 293 ~l~lf~~------I~GvGpktA~~ly~~GirtledL~~~ 325 (538)
-+.+|++ |||||||||.+|.++ +.|++.+.+.
T Consensus 224 d~~~L~G~D~~d~IpGIG~KtA~kLl~~-~gsle~i~~~ 261 (379)
T 1ul1_X 224 DLCILLGSDYCESIRGIGPKRAVDLIQK-HKSIEEIVRR 261 (379)
T ss_dssp HHHHHHHCSSSCCCTTCCHHHHHHHHHH-SSSHHHHHTT
T ss_pred HHHHHhCCCcCCCCCCcCHHHHHHHHHH-cCCHHHHHHH
Confidence 3445666 999999999999997 2489998754
No 181
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=60.32 E-value=4.5 Score=45.88 Aligned_cols=31 Identities=29% Similarity=0.479 Sum_probs=26.2
Q ss_pred HHHHhhccCCCHHHHHHHHH---h--CCCCHHHHhh
Q 009303 294 ISLFGEVWGIGPATAQKLYE---K--GHRTLDDLKN 324 (538)
Q Consensus 294 l~lf~~I~GvGpktA~~ly~---~--GirtledL~~ 324 (538)
..+|..|+||||++|+.+.+ + +|.|.+||.+
T Consensus 507 ~~~L~~v~GiG~~~A~~Iv~yR~~~G~f~sr~~L~~ 542 (785)
T 3bzc_A 507 AALLARISGLNSTLAQNIVAHRDANGAFRTRDELKK 542 (785)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHHHHHCCCSSGGGGGG
T ss_pred HHHHhhcCCCCHHHHHHHHHHHHhcCCCCCHHHHHh
Confidence 46788999999999999764 2 6999999985
No 182
>3r8n_M 30S ribosomal protein S13; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_M* 3j18_M 3oaq_M 3ofa_M 3ofx_M 3ofo_M 3r8o_M 4a2i_M 4gd1_M 4gd2_M 3i1m_M 1vs7_M* 3e1a_F 3e1c_F 1vs5_M 3i1o_M 3i1q_M 3i1s_M 3i1z_M 3i21_M ...
Probab=59.95 E-value=5.1 Score=34.38 Aligned_cols=25 Identities=12% Similarity=0.448 Sum_probs=20.9
Q ss_pred HHHHHhhccCCCHHHHHHHHHh-CCC
Q 009303 293 TISLFGEVWGIGPATAQKLYEK-GHR 317 (538)
Q Consensus 293 ~l~lf~~I~GvGpktA~~ly~~-Gir 317 (538)
+.--|+.|+|||+.+|..+.+. ||.
T Consensus 14 v~~aLt~I~GIG~~~A~~I~~~~gid 39 (114)
T 3r8n_M 14 AVIALTSIYGVGKTRSKAILAAAGIA 39 (114)
T ss_dssp HHHHGGGSTTCCHHHHHHHHHHTTCC
T ss_pred eHhhHhhhcCcCHHHHHHHHHHcCcC
Confidence 5556789999999999999876 764
No 183
>1jx4_A DNA polymerase IV (family Y); protein-DNA complex, Y-family, transferase-D complex; HET: DNA MSE ADI; 1.70A {Sulfolobus solfataricus} SCOP: d.240.1.1 e.8.1.7 PDB: 1jxl_A* 1n48_A* 1n56_A* 1ryr_A* 1rys_A* 1s0m_A* 1s0n_A* 1s0o_A* 1s10_A* 1s97_A* 1s9f_A* 2ia6_A* 2ibk_A* 2r8g_A* 2r8h_A* 2r8i_A* 2rdj_A* 3fds_A* 3m9m_B* 3m9n_B* ...
Probab=59.48 E-value=11 Score=38.10 Aligned_cols=53 Identities=21% Similarity=0.320 Sum_probs=36.1
Q ss_pred hcCCCCCCHHHHHHHHHHHHhCCcchhHHHHhhchhHHHHHHhhccCCCHHHHHHHHHh--CCCC
Q 009303 256 VKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK--GHRT 318 (538)
Q Consensus 256 l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~~--Girt 318 (538)
+..|||||+.+++++..+ -+..+.+|.+-.+....+.| |+.+..++|+. |+..
T Consensus 180 v~~l~GiG~~~~~~L~~~----Gi~t~~dL~~~~~~~L~~~f------G~~~g~~l~~~a~G~d~ 234 (352)
T 1jx4_A 180 IADVPGIGNITAEKLKKL----GINKLVDTLSIEFDKLKGMI------GEAKAKYLISLARDEYN 234 (352)
T ss_dssp GGGSTTCCHHHHHHHHTT----TCCBGGGGGSSCHHHHHHHH------CHHHHHHHHHHHTTCCC
T ss_pred CCcccccCHHHHHHHHHc----CCchHHHHHCCCHHHHHHhc------ChhHHHHHHHHhCCCCC
Confidence 677899999888876542 35667777654444455555 56768888875 8864
No 184
>1kea_A Possible G-T mismatches repair enzyme; DNA repair, DNA glycosylase, DNA mismatch, methylation; 2.00A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.96.1.2
Probab=59.35 E-value=8.4 Score=36.60 Aligned_cols=43 Identities=16% Similarity=0.243 Sum_probs=29.9
Q ss_pred hHHHHHHHHHHHhc-CCccc-cchhhhcCCCCCCHHHHHHHHHHH
Q 009303 232 RSFSYYKAIPVIEK-LPFKI-ESADQVKGLPGIGKSMQDHIQEIV 274 (538)
Q Consensus 232 r~~aY~rAa~~l~~-l~~~i-~~~~~l~~lpgIG~~ia~kI~Eil 274 (538)
|+..-..+|..+.. +...+ ...++|..|||||+.+|+.|--+.
T Consensus 91 KA~~l~~~a~~i~~~~~g~~p~~~~~L~~lpGIG~~TA~~il~~~ 135 (221)
T 1kea_A 91 RAEQLKELARVVINDYGGRVPRNRKAILDLPGVGKYTCAAVMCLA 135 (221)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCSCHHHHHTSTTCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhCCCchHHHHHHHhCCCCcHHHHHHHHHHh
Confidence 56666666666543 23333 346889999999999999987553
No 185
>3vdp_A Recombination protein RECR; zinc finger, DNA repair, DNA binding; 2.45A {Thermoanaerobacter tengcongensis} PDB: 3vdu_A 3ve5_D
Probab=58.47 E-value=4.3 Score=38.50 Aligned_cols=32 Identities=19% Similarity=0.444 Sum_probs=23.5
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHhCCcchhHHH
Q 009303 254 DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHF 285 (538)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l 285 (538)
+++..|||||++.|.++.=.|-.-.-..++.|
T Consensus 26 ~~l~~LPGIG~KsA~RlA~hLL~~~~~~~~~L 57 (212)
T 3vdp_A 26 EELSKLPGIGPKTAQRLAFFIINMPLDEVRSL 57 (212)
T ss_dssp HHHHTSTTCCHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHHHcCCHHHHHHH
Confidence 67899999999999999876654333344443
No 186
>4e9f_A Methyl-CPG-binding domain protein 4; HHH DNA glycosylase family, hydrolase-DNA complex; HET: DNA 3DR; 1.79A {Homo sapiens} PDB: 4e9e_A* 4e9g_A* 4e9h_A* 4ea5_A* 4dk9_A* 1ngn_A 4ea4_A* 4ew4_A* 4evv_A* 4ew0_A* 3iho_A
Probab=58.25 E-value=3.9 Score=37.17 Aligned_cols=24 Identities=25% Similarity=0.181 Sum_probs=20.2
Q ss_pred chhhhcCCCCCCHHHHHHHHHHHH
Q 009303 252 SADQVKGLPGIGKSMQDHIQEIVT 275 (538)
Q Consensus 252 ~~~~l~~lpgIG~~ia~kI~Eil~ 275 (538)
+.++|.+|||||+.+|+.|.-|..
T Consensus 102 ~~~~L~~LpGVG~yTAdav~~F~~ 125 (161)
T 4e9f_A 102 QWKYPIELHGIGKYGNDSYRIFCV 125 (161)
T ss_dssp CCSSGGGSTTCCHHHHHHHHHHTS
T ss_pred ChhhhhcCCCchHHHHHHHHHHHC
Confidence 467899999999999999876653
No 187
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=57.34 E-value=6 Score=40.18 Aligned_cols=30 Identities=40% Similarity=0.582 Sum_probs=26.6
Q ss_pred HHhhccCCCHHHHHHHHHhCCCCHHHHhhc
Q 009303 296 LFGEVWGIGPATAQKLYEKGHRTLDDLKNE 325 (538)
Q Consensus 296 lf~~I~GvGpktA~~ly~~GirtledL~~~ 325 (538)
.+..++||||.++++|-+.||.|++++...
T Consensus 36 ~l~~l~Gi~~~~~~kL~~ag~~t~~~~~~~ 65 (349)
T 1pzn_A 36 SIEDLPGVGPATAEKLREAGYDTLEAIAVA 65 (349)
T ss_dssp CSSCCTTCCHHHHHHHHTTTCCSHHHHHTC
T ss_pred cHHHcCCCCHHHHHHHHHcCCCcHHHHHhC
Confidence 356789999999999999999999999853
No 188
>4ebj_A Aminoglycoside nucleotidyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 1.60A {Pseudomonas aeruginosa} PDB: 4ebk_A*
Probab=56.88 E-value=13 Score=36.38 Aligned_cols=48 Identities=29% Similarity=0.483 Sum_probs=33.2
Q ss_pred CHHHHHH-HHHHHHHHhhhcCCCe-EEEecccccccCCc-CCCeeEEEecCC
Q 009303 347 PRHEVEQ-MERLLQKAGEEVLPEV-IILCGGSYRRGKAS-CGDLDVVIMHPD 395 (538)
Q Consensus 347 ~r~Ea~~-i~~iv~~~~~~~~p~~-~v~~~Gs~RRgke~-~~DVDiLit~~~ 395 (538)
.++++.. +.++++.+... .+++ .+.+-|||-||... -+||||+|....
T Consensus 18 ~~q~Vq~eL~~ive~L~~~-~~~i~~I~LFGS~ARG~~~~~SDIDilVv~~~ 68 (272)
T 4ebj_A 18 YFQGVQHTIARWVDRLREE-YADAVAILLKGSYARGDAATWSDIDFDVLVST 68 (272)
T ss_dssp HHHHHHHHHHHHHHHHHHH-CTTEEEEEEEHHHHHTCCCTTCCEEEEEEESS
T ss_pred ChHHHHHHHHHHHHHHHHh-cCCceEEEEEeceeCCCCCCCCceEEEEEecC
Confidence 3445533 56666665543 4455 78899999999865 589999996544
No 189
>1b43_A Protein (FEN-1); nuclease, DNA repair, DNA replication, transferase; 2.00A {Pyrococcus furiosus} SCOP: a.60.7.1 c.120.1.2 PDB: 1mc8_A
Probab=54.88 E-value=5.4 Score=40.47 Aligned_cols=26 Identities=15% Similarity=0.144 Sum_probs=21.4
Q ss_pred hccCCCHHHHHHHHHhCCCCHHHHhhc
Q 009303 299 EVWGIGPATAQKLYEKGHRTLDDLKNE 325 (538)
Q Consensus 299 ~I~GvGpktA~~ly~~GirtledL~~~ 325 (538)
+|+|||||||.+|.++. .|++.+.+.
T Consensus 241 gv~GiG~ktA~kli~~~-gsle~il~~ 266 (340)
T 1b43_A 241 GIKGIGLKKALEIVRHS-KDPLAKFQK 266 (340)
T ss_dssp CSTTCCHHHHHHHHHTC-SSGGGGTGG
T ss_pred CCCCccHHHHHHHHHHc-CCHHHHHcC
Confidence 79999999999999972 478877653
No 190
>3u5c_S 40S ribosomal protein S18-A, 40S ribosomal protein S17-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_M 3o30_L 3o2z_L 3u5g_S 1s1h_M 3jyv_M* 2zkq_m
Probab=54.77 E-value=6.7 Score=35.09 Aligned_cols=25 Identities=12% Similarity=0.214 Sum_probs=20.3
Q ss_pred HHHHHhhccCCCHHHHHHHHHh-CCC
Q 009303 293 TISLFGEVWGIGPATAQKLYEK-GHR 317 (538)
Q Consensus 293 ~l~lf~~I~GvGpktA~~ly~~-Gir 317 (538)
+.--||.|+|||+++|..+.+. ||.
T Consensus 28 v~~ALt~I~GIG~~~A~~I~~~~gid 53 (146)
T 3u5c_S 28 IVYALTTIKGVGRRYSNLVCKKADVD 53 (146)
T ss_dssp TTTTGGGSTTCCHHHHHHHHHHHTCC
T ss_pred hHhhHhhhcCCCHHHHHHHHHHcCCC
Confidence 3445789999999999999876 764
No 191
>4gfj_A Topoisomerase V; helix-hairpin-helix, DNA repair enzyme, DNA B isomerase; 2.91A {Methanopyrus kandleri AV19}
Probab=54.53 E-value=9 Score=39.98 Aligned_cols=56 Identities=21% Similarity=0.363 Sum_probs=37.1
Q ss_pred hcCCCCCCHHHHHHHHHHHHhCCcchhHHHHhhchhHHHHHHhhccCCCHHHHHHHHHhCCCCHHHHh
Q 009303 256 VKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLK 323 (538)
Q Consensus 256 l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~~GirtledL~ 323 (538)
+..|||||+..|+.+-| .-|+++.+-.. ....| ..-|||.|+|+++ .|++||+...
T Consensus 470 LtAIaGIGp~tAeRLLE--kFGSVe~Vm~A-------teDEL-RedGIGekqarrI--~gl~~l~~~~ 525 (685)
T 4gfj_A 470 LISIRGIDRERAERLLK--KYGGYSKVREA-------GVEEL-REDGLTDAQIREL--KGLKTLESIV 525 (685)
T ss_dssp HHTSTTCCHHHHHHHHH--HHTSHHHHHHS-------CHHHH-HHTTCCHHHHHHH--HTCHHHHHHS
T ss_pred eeccCCCCHHHHHHHHH--HhcCHHHHHhC-------CHHHH-HHccccHHHHHHH--hhHHHHHHHh
Confidence 56788888888887655 34555555331 12234 4499999999988 4777776544
No 192
>1mpg_A ALKA, 3-methyladenine DNA glycosylase II; DNA repair, base excision, methylation, ALK hydrolase; 1.80A {Escherichia coli} SCOP: a.96.1.3 d.129.1.2 PDB: 1diz_A 1pvs_A* 3cvs_A* 3cvt_A* 3cw7_A* 3cwa_A* 3cws_A* 3cwt_A* 3cwu_A* 3d4v_A* 3ogd_A* 3oh9_A* 3oh6_A*
Probab=54.46 E-value=12 Score=36.86 Aligned_cols=25 Identities=24% Similarity=0.268 Sum_probs=20.5
Q ss_pred hHHHHHHhhccCCCHHHHHHHHHhC
Q 009303 291 VRTISLFGEVWGIGPATAQKLYEKG 315 (538)
Q Consensus 291 ~~~l~lf~~I~GvGpktA~~ly~~G 315 (538)
..+++.|++++||||+||..+--.+
T Consensus 203 ~~~~~~L~~lpGIG~~TA~~ill~~ 227 (282)
T 1mpg_A 203 EQAMKTLQTFPGIGRWTANYFALRG 227 (282)
T ss_dssp HHHHHHHTTSTTCCHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCcCHHHHHHHHHHh
Confidence 4578888899999999999876543
No 193
>3n5n_X A/G-specific adenine DNA glycosylase; alpha-helices, helix-hairpin-helix motif, iron-sulfur cluste hydrolase; 2.30A {Homo sapiens}
Probab=54.38 E-value=9.4 Score=37.97 Aligned_cols=66 Identities=20% Similarity=0.276 Sum_probs=40.6
Q ss_pred hHHHHHHHHHHHh-cCCccc-cchhhhcC-CCCCCHHHHHHHHHHHHhCCcchhHHHHhhchhHHHHHHhhccCCC
Q 009303 232 RSFSYYKAIPVIE-KLPFKI-ESADQVKG-LPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIG 304 (538)
Q Consensus 232 r~~aY~rAa~~l~-~l~~~i-~~~~~l~~-lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvG 304 (538)
|+..-.++|..|. .+...+ .+.++|.. |||||..+|+.|--+. -|.-. +- ....+.+++.++.+++
T Consensus 104 KA~~L~~~A~~i~~~~~g~~p~~~~~Ll~~LpGIG~kTA~~iL~~a-~g~p~----~~--VDt~V~Rv~~Rlg~i~ 172 (287)
T 3n5n_X 104 RGRRLQEGARKVVEELGGHMPRTAETLQQLLPGVGRYTAGAIASIA-FGQAT----GV--VDGNVARVLCRVRAIG 172 (287)
T ss_dssp HHHHHHHHHHHHHHHSTTCCCSSHHHHHHHSTTCCHHHHHHHHHHH-SCCCC----CC--CCHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHhCCCCcHHHHHHHHHcCCCCHHHHHHHHHHh-cCCCC----cc--ccHHHHHHHHHhCCCC
Confidence 6666666666654 333333 24688988 9999999999997544 34321 11 2234666676666655
No 194
>1b22_A DNA repair protein RAD51; DNA binding, riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.60.4.1
Probab=54.36 E-value=4.9 Score=34.41 Aligned_cols=63 Identities=19% Similarity=0.288 Sum_probs=36.1
Q ss_pred chhhhcCCCCCCHHHHHHHHHHHHhCCcchhHHHHhhchhHHHHHHhhccCCCHHHHHHHHHh-------CCCCHHHHh
Q 009303 252 SADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-------GHRTLDDLK 323 (538)
Q Consensus 252 ~~~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~~-------GirtledL~ 323 (538)
.+++|.++ |||...++|+.+ .|. .-++.+..- .-+.|..|+|||+.+|.+|.+. |+.|-.|+.
T Consensus 24 ~I~~L~~~-GIg~~~i~kL~e---AG~-~Tve~va~a----~~~eL~~i~GIse~ka~kIi~aA~kl~~~gF~ta~e~~ 93 (114)
T 1b22_A 24 PISRLEQC-GINANDVKKLEE---AGF-HTVEAVAYA----PKKELINIKGISEAKADKILAEAAKLVPMGFTTATEFH 93 (114)
T ss_dssp CHHHHHHT-TCSHHHHHHHHT---TCC-SSGGGBTSS----BHHHHHTTTTCSTTHHHHHHHHHHHHSCCC--------
T ss_pred cHHHHHhc-CCCHHHHHHHHH---cCc-CcHHHHHhC----CHHHHHHccCCCHHHHHHHHHHHHHHcccCCCcHHHHH
Confidence 45555555 999888877654 443 334444322 2345669999999999999752 566655554
No 195
>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*
Probab=53.90 E-value=10 Score=38.75 Aligned_cols=66 Identities=12% Similarity=0.186 Sum_probs=41.0
Q ss_pred hHHHHHHHHHHHhc-CCccc-cchhhhcCCCCCCHHHHHHHHHHHHhCCcchhHHHHhhchhHHHHHHhhccCCC
Q 009303 232 RSFSYYKAIPVIEK-LPFKI-ESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIG 304 (538)
Q Consensus 232 r~~aY~rAa~~l~~-l~~~i-~~~~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvG 304 (538)
|+..-.++|..|.. +...+ ...++|.+|||||..+|+.|--+.- |.-. +- ....+.+.+.++.++.
T Consensus 94 ra~~l~~~a~~~~~~~~g~~p~~~~~L~~l~GIG~~tA~~il~~~~-~~~~----~~--vD~~v~Rv~~rl~~~~ 161 (369)
T 3fsp_A 94 RVRNLHAAVKEVKTRYGGKVPDDPDEFSRLKGVGPYTVGAVLSLAY-GVPE----PA--VDGNVMRVLSRLFLVT 161 (369)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCSHHHHHTSTTCCHHHHHHHHHHHH-CCCC----CC--CCHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHcCCCChhHHHHHhcCCCcCHHHHHHHHHHHC-CCCc----cc--ccHHHHHHHHHHcCcc
Confidence 66666666666543 22222 3568899999999999999987753 3311 11 1234666676666654
No 196
>2kng_A Protein LSR2; DNA-binding domain, immune response, DNA binding protein; NMR {Mycobacterium tuberculosis}
Probab=53.75 E-value=8.5 Score=28.58 Aligned_cols=22 Identities=23% Similarity=0.409 Sum_probs=19.7
Q ss_pred HHHHHHHHHHcCCccCCCCCcc
Q 009303 476 NRRLRLLAESKGYRLDDTGLFP 497 (538)
Q Consensus 476 nr~lR~~A~~kg~~L~~~gL~~ 497 (538)
++.+|.||++.||..++.|-..
T Consensus 15 ~~aIR~WAr~nG~~VsdRGRIp 36 (55)
T 2kng_A 15 SAAIREWARRNGHNVSTRGRIP 36 (55)
T ss_dssp HHHHHHHHHHTTCCCCSSSCCC
T ss_pred hHHHHHHHHHcCCcCCCCCCCC
Confidence 6899999999999999998654
No 197
>3k4g_A DNA-directed RNA polymerase subunit alpha; bacterial transcription regulation, DNA-directed RNA polymer nucleotidyltransferase; HET: MLY; 2.05A {Escherichia coli k-12} SCOP: a.60.3.1 PDB: 3n4m_B* 1lb2_B* 3n97_B* 1xs9_D
Probab=53.06 E-value=15 Score=29.84 Aligned_cols=23 Identities=13% Similarity=0.361 Sum_probs=20.9
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHh
Q 009303 254 DQVKGLPGIGKSMQDHIQEIVTT 276 (538)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~Eil~t 276 (538)
+++.+|+|+|++..+.|.+.|+.
T Consensus 44 ~dLlki~n~G~KSl~EI~~~L~~ 66 (86)
T 3k4g_A 44 VELLXTPNLGXXSLTEIXDVLAS 66 (86)
T ss_dssp HHHHTSTTCCHHHHHHHHHHHHT
T ss_pred HHHhhccccCcccHHHHHHHHHH
Confidence 67999999999999999999964
No 198
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae}
Probab=52.28 E-value=5.2 Score=47.49 Aligned_cols=32 Identities=16% Similarity=0.098 Sum_probs=26.6
Q ss_pred HHHHHhhccCCCHHHHHHHH--H-h---CCCCHHHHhh
Q 009303 293 TISLFGEVWGIGPATAQKLY--E-K---GHRTLDDLKN 324 (538)
Q Consensus 293 ~l~lf~~I~GvGpktA~~ly--~-~---GirtledL~~ 324 (538)
.-.+|..|+||||++|+.+. . + .+.|.+||.+
T Consensus 712 s~~lL~~v~GlGp~kA~~Iv~~r~~~~G~f~sr~~L~~ 749 (1219)
T 3psi_A 712 YASALKYISGFGKRKAIDFLQSLQRLNEPLLARQQLIT 749 (1219)
T ss_dssp HHTTGGGSTTCCHHHHHHHHHHHHHHCSCCCCTTHHHH
T ss_pred CHHHHHhCCCCCHHHHHHHHHHHHHhCCCCCCHHHHhh
Confidence 56778899999999999995 2 2 4899999986
No 199
>1orn_A Endonuclease III; DNA repair, DNA glycosylase, [4Fe-4S] cluster, iron-sulfur cluster, hydrolase/DNA complex; HET: PED; 1.70A {Geobacillus stearothermophilus} SCOP: a.96.1.1 PDB: 1orp_A* 1p59_A*
Probab=52.24 E-value=15 Score=35.01 Aligned_cols=43 Identities=16% Similarity=0.339 Sum_probs=30.2
Q ss_pred hHHHHHHHHHHHh-cCCcccc-chhhhcCCCCCCHHHHHHHHHHH
Q 009303 232 RSFSYYKAIPVIE-KLPFKIE-SADQVKGLPGIGKSMQDHIQEIV 274 (538)
Q Consensus 232 r~~aY~rAa~~l~-~l~~~i~-~~~~l~~lpgIG~~ia~kI~Eil 274 (538)
|+..-..+|..+. .+...+. ..++|..|||||..+|+.|--+.
T Consensus 89 KA~~l~~~a~~i~~~~~g~~p~~~~~L~~lpGIG~~TA~~il~~a 133 (226)
T 1orn_A 89 KARNIQKLCAMLIDKYNGEVPRDRDELMKLPGVGRKTANVVVSVA 133 (226)
T ss_dssp HHHHHHHHHHHHHHHSTTSCCSCHHHHTTSTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCcHHHHHHHHHCCCccHHHHHHHHHHH
Confidence 5555566665554 3433343 46889999999999999988654
No 200
>3c1y_A DNA integrity scanning protein DISA; DNA damage, DNA repair, DNA-binding, DNA binding protein; HET: DNA 2BA; 2.10A {Thermotoga maritima} PDB: 3c1z_A* 3c21_A* 3c23_A*
Probab=50.89 E-value=5.2 Score=41.31 Aligned_cols=20 Identities=30% Similarity=0.411 Sum_probs=11.9
Q ss_pred HHHHhhccCCCHHHHHHHHH
Q 009303 294 ISLFGEVWGIGPATAQKLYE 313 (538)
Q Consensus 294 l~lf~~I~GvGpktA~~ly~ 313 (538)
.+.|.+|.|||+++|+.+++
T Consensus 346 ~eEL~~VeGIGe~rAr~Ire 365 (377)
T 3c1y_A 346 VEDLKKVEGIGEKRARAISE 365 (377)
T ss_dssp HHHHTTSTTCCHHHHHHHHH
T ss_pred HHHHHhccCccHHHHHHHHH
Confidence 34455666666666666654
No 201
>3iz6_M 40S ribosomal protein S18 (S13P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=50.56 E-value=8.2 Score=34.76 Aligned_cols=26 Identities=12% Similarity=0.219 Sum_probs=21.3
Q ss_pred HHHHHHhhccCCCHHHHHHHHHh-CCC
Q 009303 292 RTISLFGEVWGIGPATAQKLYEK-GHR 317 (538)
Q Consensus 292 ~~l~lf~~I~GvGpktA~~ly~~-Gir 317 (538)
.+.--||.|+|||+++|..+.+. ||.
T Consensus 25 ~v~~ALt~I~GIG~~~A~~I~~~~gid 51 (152)
T 3iz6_M 25 KIMFALTSIKGVGRRFSNIVCKKADID 51 (152)
T ss_dssp BHHHHHTTSTTCCHHHHHHHHHHHTCC
T ss_pred EeHhhhhhccCcCHHHHHHHHHHcCCC
Confidence 35556789999999999999876 764
No 202
>3j20_O 30S ribosomal protein S13P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=50.54 E-value=8.4 Score=34.54 Aligned_cols=25 Identities=20% Similarity=0.133 Sum_probs=20.8
Q ss_pred HHHHHhhccCCCHHHHHHHHHh-CCC
Q 009303 293 TISLFGEVWGIGPATAQKLYEK-GHR 317 (538)
Q Consensus 293 ~l~lf~~I~GvGpktA~~ly~~-Gir 317 (538)
+.--||.|+|||+++|..+.+. ||.
T Consensus 21 v~~aLt~I~GIG~~~A~~I~~~~gid 46 (148)
T 3j20_O 21 LRWALTAIKGIGINFATMVCRVAGLD 46 (148)
T ss_dssp HHHHHHHSTTCCHHHHHHHHHHHTCC
T ss_pred ehhhhhhccCcCHHHHHHHHHHhCCC
Confidence 5556789999999999999876 764
No 203
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=50.53 E-value=4.7 Score=41.81 Aligned_cols=46 Identities=15% Similarity=0.146 Sum_probs=34.3
Q ss_pred HhhccCCCHHHHHHHHHh---C-CCCHHHHhhcc------Ccchhhhccccchhhh
Q 009303 297 FGEVWGIGPATAQKLYEK---G-HRTLDDLKNED------SLTHSQRLGLKYFDDI 342 (538)
Q Consensus 297 f~~I~GvGpktA~~ly~~---G-irtledL~~~~------~L~~~q~~Glk~~ed~ 342 (538)
+++|||||+++|+++.+- | +..+++|+++. .|..+.|+|.+....|
T Consensus 82 l~~lpGIG~~ia~kI~E~l~tG~~~~le~l~~d~~~~~l~~l~~I~GvGpk~a~~l 137 (381)
T 1jms_A 82 TEGIPCLGDKVKSIIEGIIEDGESSEAKAVLNDERYKSFKLFTSVFGVGLKTAEKW 137 (381)
T ss_dssp GTTCSSCCHHHHHHHHHHHHHSSCHHHHHHHHCHHHHHHHHHHTSTTCCHHHHHHH
T ss_pred HhcCCCCcHHHHHHHHHHHHcCCcHHHHHHhcCcchhHHHHHHccCCCCHHHHHHH
Confidence 679999999999999873 4 67888888632 3566777776665554
No 204
>3gfk_B DNA-directed RNA polymerase subunit alpha; protein-protein complex, cytoplasm, redox-active center, stress response, transcription; 2.30A {Bacillus subtilis} SCOP: a.60.3.1
Probab=49.51 E-value=16 Score=29.16 Aligned_cols=23 Identities=4% Similarity=0.297 Sum_probs=20.6
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHh
Q 009303 254 DQVKGLPGIGKSMQDHIQEIVTT 276 (538)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~Eil~t 276 (538)
+++.+++|+|++..+.|.+.|+.
T Consensus 48 ~dLlki~n~G~kSl~EI~~~L~e 70 (79)
T 3gfk_B 48 EDMMKVRNLGRKSLEEVKAKLEE 70 (79)
T ss_dssp HHHTTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCHhHHHHHHHHHHH
Confidence 67999999999999999998853
No 205
>2abk_A Endonuclease III; DNA-repair, DNA glycosylase; 1.85A {Escherichia coli} SCOP: a.96.1.1
Probab=49.14 E-value=14 Score=34.71 Aligned_cols=43 Identities=14% Similarity=0.316 Sum_probs=30.7
Q ss_pred hHHHHHHHHHHHh-cCCccc-cchhhhcCCCCCCHHHHHHHHHHH
Q 009303 232 RSFSYYKAIPVIE-KLPFKI-ESADQVKGLPGIGKSMQDHIQEIV 274 (538)
Q Consensus 232 r~~aY~rAa~~l~-~l~~~i-~~~~~l~~lpgIG~~ia~kI~Eil 274 (538)
|+..-..+|..+. .+...+ +..++|..|||||..+|+.|--+.
T Consensus 85 KA~~l~~~a~~~~~~~~g~~~~~~~~L~~l~GIG~~tA~~il~~~ 129 (211)
T 2abk_A 85 KAENIIKTCRILLEQHNGEVPEDRAALEALPGVGRKTANVVLNTA 129 (211)
T ss_dssp HHHHHHHHHHHHHHHTTTSCCSCHHHHHHSTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCchHHHHHHHhCCCCChHHHHHHHHHH
Confidence 6666667776664 333333 346889999999999999987654
No 206
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=48.93 E-value=5.2 Score=45.39 Aligned_cols=27 Identities=37% Similarity=0.497 Sum_probs=24.6
Q ss_pred HhhccCCCHHHHHHHHHhCCCCHHHHh
Q 009303 297 FGEVWGIGPATAQKLYEKGHRTLDDLK 323 (538)
Q Consensus 297 f~~I~GvGpktA~~ly~~GirtledL~ 323 (538)
++.++|||||+|+.|-+.||.|+.||.
T Consensus 117 ~~~l~gvg~~~~~~l~~lgi~~~~dll 143 (780)
T 1gm5_A 117 IQYAKGVGPNRKKKLKKLGIETLRDLL 143 (780)
T ss_dssp SSSSSSCCHHHHHHHHTTTCCSSGGGT
T ss_pred chhcCCCCHHHHHHHHHCCCCcHHHHH
Confidence 457899999999999888999999997
No 207
>3mfi_A DNA polymerase ETA; DNA damage, DNA repair, DNA replication, DNA synthesis, NUCL binding, magnesium; HET: DNA DOC TTD DTP; 1.76A {Saccharomyces cerevisiae} PDB: 3mfh_A* 3oha_A* 3ohb_A* 2r8j_A* 2r8k_A* 2wtf_A* 2xgp_A* 2xgq_A* 1jih_A*
Probab=48.69 E-value=5.5 Score=43.00 Aligned_cols=28 Identities=11% Similarity=0.448 Sum_probs=23.4
Q ss_pred HhhccCCCHHHHHHHHHh-CC---CCHHHHhh
Q 009303 297 FGEVWGIGPATAQKLYEK-GH---RTLDDLKN 324 (538)
Q Consensus 297 f~~I~GvGpktA~~ly~~-Gi---rtledL~~ 324 (538)
+..+||||++++++|.+. || +|+.+|..
T Consensus 309 V~~l~GIG~~t~~~L~~llGI~~~~ti~~i~~ 340 (520)
T 3mfi_A 309 ITSFWTLGGVLGKELIDVLDLPHENSIKHIRE 340 (520)
T ss_dssp GGGSTTCSSHHHHHHHHHTTCCSSSHHHHHHH
T ss_pred HHHhcCCCHHHHHHHHHhcCCCcccchhhhhh
Confidence 457999999999999999 99 88765553
No 208
>3fhg_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase, hydrolase; 1.90A {Sulfolobus solfataricus}
Probab=48.69 E-value=7.4 Score=36.61 Aligned_cols=22 Identities=18% Similarity=0.369 Sum_probs=18.5
Q ss_pred chhhhcCCCCCCHHHHHHHHHH
Q 009303 252 SADQVKGLPGIGKSMQDHIQEI 273 (538)
Q Consensus 252 ~~~~l~~lpgIG~~ia~kI~Ei 273 (538)
..++|.+|||||..+|+.|--+
T Consensus 115 ~~~~L~~lpGIG~kTA~~il~~ 136 (207)
T 3fhg_A 115 ARERLLNIKGIGMQEASHFLRN 136 (207)
T ss_dssp HHHHHTTSTTCCHHHHHHHHHH
T ss_pred HHHHHHcCCCcCHHHHHHHHHH
Confidence 4578999999999999998543
No 209
>2fcl_A Hypothetical protein TM1012; putative nucleotidyltransferase, structural genomics, joint for structural genomics, JCSG; HET: MLY; 1.20A {Thermotoga maritima} SCOP: d.218.1.11 PDB: 2ewr_A
Probab=48.23 E-value=31 Score=31.27 Aligned_cols=54 Identities=11% Similarity=0.104 Sum_probs=32.2
Q ss_pred HHHHHHHHhhhcCCCeEEEecccc----cccCCcCCCeeEEEecCCcchhhhhHHHHHHHHHHcCccc
Q 009303 354 MERLLQKAGEEVLPEVIILCGGSY----RRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLR 417 (538)
Q Consensus 354 i~~iv~~~~~~~~p~~~v~~~Gs~----RRgke~~~DVDiLit~~~~~~~~~~l~~vv~~L~~~g~l~ 417 (538)
+..+...+- .-++...++||| +=.-...+||||+|...+ ..++.+.|...|+-.
T Consensus 22 L~~i~~~L~---~~~V~~~l~Gs~Al~~~G~~~~~~DIDi~i~~~d-------a~~~~~~L~~~g~~~ 79 (169)
T 2fcl_A 22 LRXIYDRLX---NEXVNWVVTGSLSFALQGVPVEVHDIDIQTDEEG-------AYEIERIFSEFVSXX 79 (169)
T ss_dssp HHHHHHHHT---TSSCCEEEEHHHHHHHTTCCCCCCSEEEEECHHH-------HHHHHHHTGGGEEEE
T ss_pred HHHHHHHHH---hcCCCEEEeHHHHHHHcCCCCCCCccEEEecccC-------HHHHHHHHHHHhhcc
Confidence 444444432 346777888984 445668999999993321 223455566655433
No 210
>3hj4_A Minor editosome-associated tutase; nucleotidyltransferase, RNA UTP-binding, transferase; 1.56A {Trypanosoma brucei} PDB: 3hiy_A 3hj1_A*
Probab=48.17 E-value=23 Score=36.69 Aligned_cols=37 Identities=16% Similarity=0.114 Sum_probs=29.5
Q ss_pred HHhhhcCCCeEEEecccccccCCc-CCCeeEEEecCCc
Q 009303 360 KAGEEVLPEVIILCGGSYRRGKAS-CGDLDVVIMHPDR 396 (538)
Q Consensus 360 ~~~~~~~p~~~v~~~Gs~RRgke~-~~DVDiLit~~~~ 396 (538)
++.....|++.|.+-||+.-|.-+ .+|||+.|..++.
T Consensus 37 ~ii~~~~p~~~v~~FGS~~tgl~lp~SDiDlvI~~~~~ 74 (384)
T 3hj4_A 37 DIGMLAVNKAHVELFGSHVSGFCTPHSDADISLTYRNF 74 (384)
T ss_dssp HHHHHHSTTCEEEEESHHHHSCCCTTCCEEEEEECTTC
T ss_pred HHHHHHCCCcEEEEeeeccCCCCCCCCCeeEEEecCCC
Confidence 333446799999999999999765 5799999987653
No 211
>4dez_A POL IV 1, DNA polymerase IV 1; Y-family, transferase; HET: DNA; 2.60A {Mycobacterium smegmatis}
Probab=48.07 E-value=24 Score=35.72 Aligned_cols=53 Identities=17% Similarity=0.293 Sum_probs=38.1
Q ss_pred hcCCCCCCHHHHHHHHHHHHhCCcchhHHHHhhchhHHHHHHhhccCCCHHHHHHHHHh--CCCC
Q 009303 256 VKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK--GHRT 318 (538)
Q Consensus 256 l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~~--Girt 318 (538)
+..|||||+.+++++..+ -+..+.+|.+-.+....+.| |+++..++|+. |+..
T Consensus 180 v~~l~GiG~~~~~~L~~~----GI~Ti~dL~~~~~~~L~~~f------G~~~g~~l~~~a~G~d~ 234 (356)
T 4dez_A 180 PDALWGVGPKTTKKLAAM----GITTVADLAVTDPSVLTTAF------GPSTGLWLLLLAKGGGD 234 (356)
T ss_dssp GGGSTTCCHHHHHHHHHT----TCCSHHHHHTSCHHHHHHHH------CHHHHHHHHHHHTTCCC
T ss_pred HHHHcCCchhHHHHHHHc----CCCeecccccCCHHHHHHHh------CChHHHHHHHHHcCCCc
Confidence 578999999999987654 35666777665555555666 67888888875 8753
No 212
>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger, toprim, walker B ATP binding motif; 2.50A {Deinococcus radiodurans} SCOP: e.49.1.1 PDB: 2v1c_A
Probab=47.48 E-value=7.7 Score=37.16 Aligned_cols=32 Identities=19% Similarity=0.339 Sum_probs=24.1
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHhCCcchhHHH
Q 009303 254 DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHF 285 (538)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l 285 (538)
+++..|||||++.|.++.-.|-.-.-..++.|
T Consensus 12 ~~l~~LPGIG~KSA~RlA~hLL~~~~~~~~~L 43 (228)
T 1vdd_A 12 RELSRLPGIGPKSAQRLAFHLFEQPREDIERL 43 (228)
T ss_dssp HHHHTSTTCCHHHHHHHHHHHSSSCHHHHHHH
T ss_pred HHHhHCCCCCHHHHHHHHHHHHcCCHHHHHHH
Confidence 67999999999999999877754444444444
No 213
>1r89_A TRNA nucleotidyltransferase; CCA adding enzyme, incoming nucleotide, nucleotidyltransfera superfamily; HET: CTP; 1.80A {Archaeoglobus fulgidus} SCOP: a.160.1.3 d.218.1.7 d.58.16.2 PDB: 1r8a_A 1r8b_A* 1r8c_A* 1sz1_A* 1tfw_A* 1tfy_A* 1uet_A 1ueu_A* 1uev_A* 2dr5_A 2dr7_A 2dr8_A* 2dr9_A 2dra_A* 2drb_A 2dvi_A* 2zh1_A 2zh2_A 2zh3_A 2zh4_A ...
Probab=47.48 E-value=21 Score=37.55 Aligned_cols=30 Identities=30% Similarity=0.388 Sum_probs=24.8
Q ss_pred eEEEecccccccCCcC--CCeeEEEecCCcch
Q 009303 369 VIILCGGSYRRGKASC--GDLDVVIMHPDRKS 398 (538)
Q Consensus 369 ~~v~~~Gs~RRgke~~--~DVDiLit~~~~~~ 398 (538)
+.+.++|||+||--.- +||||.|.-|...+
T Consensus 40 ~~v~~~GS~AkgT~Lrg~sDIDIfv~f~~~~~ 71 (437)
T 1r89_A 40 VEYVFVGSYARNTWLKGSLEIDVFLLFPEEFS 71 (437)
T ss_dssp CCEEEEHHHHHTCCCTTCCEEEEEEEECTTSC
T ss_pred CeEEEeccccCCCcCCCCCCceEEEEcCCCCC
Confidence 6888999999998887 58999998776544
No 214
>2xzm_M RPS18E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_M
Probab=47.24 E-value=9.9 Score=34.34 Aligned_cols=25 Identities=20% Similarity=0.120 Sum_probs=20.8
Q ss_pred HHHHHhhccCCCHHHHHHHHHh-CCC
Q 009303 293 TISLFGEVWGIGPATAQKLYEK-GHR 317 (538)
Q Consensus 293 ~l~lf~~I~GvGpktA~~ly~~-Gir 317 (538)
+.--|+.|+|||..+|..+.+. ||.
T Consensus 28 v~~aLt~I~GIG~~~A~~I~~~~gid 53 (155)
T 2xzm_M 28 TPIALTGIRGIGRRFAYIICKVLKID 53 (155)
T ss_dssp HHHHHTTSTTCCHHHHHHHHHHTTCC
T ss_pred EEEeeecccccCHHHHHHHHHHcCCC
Confidence 5556789999999999999876 764
No 215
>1z3e_B DNA-directed RNA polymerase alpha chain; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: a.60.3.1 PDB: 3ihq_B
Probab=47.04 E-value=5.5 Score=31.36 Aligned_cols=43 Identities=21% Similarity=0.394 Sum_probs=31.9
Q ss_pred cCCCHHHHHHHHHhCCCCHHHHhhc--cCcchhhhccccchhhhc
Q 009303 301 WGIGPATAQKLYEKGHRTLDDLKNE--DSLTHSQRLGLKYFDDIK 343 (538)
Q Consensus 301 ~GvGpktA~~ly~~GirtledL~~~--~~L~~~q~~Glk~~ed~~ 343 (538)
-++.+....-|-+.||.|+.||.+. ..|-++.+||.+..+++.
T Consensus 14 L~LS~Ra~NcLkragI~Tv~dL~~~s~~dLlki~n~G~kSl~EI~ 58 (73)
T 1z3e_B 14 LDLSVRSYNCLKRAGINTVQELANKTEEDMMKVRNLGRKSLEEVK 58 (73)
T ss_dssp SCCBHHHHHHHHHTTCCBHHHHHTSCHHHHHTSTTCCHHHHHHHH
T ss_pred hCCCHHHHHHHHHcCCCcHHHHHcCCHHHHHHcCCCCHHHHHHHH
Confidence 3667777777878899999999853 357778888877765544
No 216
>3ory_A Flap endonuclease 1; hydrolase; 2.00A {Desulfurococcus amylolyticus}
Probab=46.54 E-value=7.8 Score=39.84 Aligned_cols=24 Identities=29% Similarity=0.556 Sum_probs=19.9
Q ss_pred hccCCCHHHHHHHHHh-CCCCHHHHhh
Q 009303 299 EVWGIGPATAQKLYEK-GHRTLDDLKN 324 (538)
Q Consensus 299 ~I~GvGpktA~~ly~~-GirtledL~~ 324 (538)
+|+|||||||.+|.++ | ||+.+.+
T Consensus 255 GVpGIG~KtA~kLl~~~g--sle~il~ 279 (363)
T 3ory_A 255 GFEGIGPKKALQLVKAYG--GIEKIPK 279 (363)
T ss_dssp CSTTCCHHHHHHHHHHHT--SSTTSCG
T ss_pred CCCCcCHHHHHHHHHHcC--CHHHHHH
Confidence 7889999999999987 5 6666654
No 217
>3jz0_A Lincosamide nucleotidyltransferase; alpha-beta structure, transferase-antibiotic CO; HET: APC CLY; 2.00A {Enterococcus faecium} PDB: 3jyy_A*
Probab=45.59 E-value=70 Score=31.57 Aligned_cols=44 Identities=14% Similarity=0.261 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHhhhcCCCeE-EEecccccccCCcC-CCeeEEEecCC
Q 009303 350 EVEQMERLLQKAGEEVLPEVI-ILCGGSYRRGKASC-GDLDVVIMHPD 395 (538)
Q Consensus 350 Ea~~i~~iv~~~~~~~~p~~~-v~~~Gs~RRgke~~-~DVDiLit~~~ 395 (538)
+-+-+..|++.+.. .+.+. |.+.||+-||.... .|+||+|...+
T Consensus 24 ~~e~l~~I~~~~~~--d~~i~av~l~GS~~~~~~D~~SD~Di~~vV~~ 69 (287)
T 3jz0_A 24 QKELIANVKNLTES--DERITACMMYGSFTKGEGDQYSDIEFYIFLKH 69 (287)
T ss_dssp HHHHHHHHHHHHHH--CTTEEEEEECSGGGTTCCCTTCCEEEEEEECG
T ss_pred HHHHHHHHHHHHhc--CCCEEEEEEECCccCCCCCCccceeEEEEEcC
Confidence 33444555554432 67884 77899999986443 79999997655
No 218
>2vqe_M 30S ribosomal protein S13, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: a.156.1.1 PDB: 1gix_P* 1hnw_M* 1hnx_M* 1hnz_M* 1hr0_M 1ibk_M* 1ibl_M* 1ibm_M 1j5e_M 1jgo_P* 1jgp_P* 1jgq_P* 1mj1_P* 1ml5_P* 1n32_M* 1n33_M* 1n34_M 1n36_M 1xmo_M* 1xmq_M* ...
Probab=44.95 E-value=6.3 Score=34.38 Aligned_cols=25 Identities=32% Similarity=0.449 Sum_probs=20.4
Q ss_pred HHHHHhhccCCCHHHHHHHHHh-CCC
Q 009303 293 TISLFGEVWGIGPATAQKLYEK-GHR 317 (538)
Q Consensus 293 ~l~lf~~I~GvGpktA~~ly~~-Gir 317 (538)
+.--|+.|+|||+.+|..+.+. ||.
T Consensus 15 v~~aLt~I~GIG~~~A~~I~~~~gi~ 40 (126)
T 2vqe_M 15 VDVALTYIYGIGKARAKEALEKTGIN 40 (126)
T ss_dssp HHHHHTTSSSCCSHHHHHHTTTTTCC
T ss_pred eeeehhccccccHHHHHHHHHHcCCC
Confidence 4555789999999999999775 664
No 219
>3osn_A DNA polymerase IOTA; hoogsteen base PAIR, protein-DNA complex, Y-family DNA polym translesion synthesis, nucleoside triphosphate; HET: DNA DOC 6OG TTP; 1.90A {Homo sapiens} PDB: 2dpj_A* 2fll_A* 2fln_A* 2flp_A* 3epg_A* 3epi_A* 2dpi_A* 3g6v_A* 3g6y_A* 3g6x_A* 3gv7_B* 3gv8_B* 3ngd_A* 3gv5_B* 3q8p_B* 3q8q_B* 3q8r_B* 3q8s_B* 4ebc_A* 4ebd_A* ...
Probab=44.63 E-value=23 Score=37.00 Aligned_cols=53 Identities=19% Similarity=0.380 Sum_probs=37.0
Q ss_pred hcCCCCCCHHHHHHHHHHHHhCCcchhHHHHhhchhHHHHHHhhccCCCHHHHHHHHHh--CCCC
Q 009303 256 VKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK--GHRT 318 (538)
Q Consensus 256 l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~~--Girt 318 (538)
+..|||||+++++++..+ | +..+.+|.+-.+....+.| |.+.+..||+. |+..
T Consensus 236 v~~l~GIG~~t~~~L~~l---G-I~TigdLa~~~~~~L~~~f------G~~~g~~L~~~a~G~d~ 290 (420)
T 3osn_A 236 IKEIPGIGYKTAKCLEAL---G-INSVRDLQTFSPKILEKEL------GISVAQRIQKLSFGEDN 290 (420)
T ss_dssp GGGSTTCCHHHHHHHHHT---T-CCSHHHHHHSCHHHHHHHH------HHHHHHHHHHHHTTCCC
T ss_pred HHHccCCCHHHHHHHHHh---C-CCcHHHHhhCCHHHHHHHh------CchHHHHHHHHhcCCCc
Confidence 678999999999988763 3 4556666654444344455 56788999984 8864
No 220
>2xhi_A N-glycosylase/DNA lyase; lyase-DNA complex, lyase/DNA complex, separation-OF-function helix-hairpin-helix, DNA repair; HET: 8OG; 1.55A {Homo sapiens} PDB: 1ko9_A 1lwy_A* 1hu0_A* 1lwv_A* 1lww_A* 2noe_A* 2noh_A* 2nol_A* 1n3c_A* 1fn7_A* 2noz_A* 1yqk_A 1yqr_A* 1yql_A* 1yqm_A* 2noi_A 1ebm_A* 1m3q_A* 1m3h_A* 1n39_A* ...
Probab=43.66 E-value=24 Score=36.14 Aligned_cols=51 Identities=24% Similarity=0.212 Sum_probs=32.5
Q ss_pred HHHcCCChhHHHHHHHHHHHhc-CCcc--------c---cchhhhcCCCCCCHHHHHHHHHHH
Q 009303 224 YRALGEDRRSFSYYKAIPVIEK-LPFK--------I---ESADQVKGLPGIGKSMQDHIQEIV 274 (538)
Q Consensus 224 ~e~~g~~~r~~aY~rAa~~l~~-l~~~--------i---~~~~~l~~lpgIG~~ia~kI~Eil 274 (538)
+.-.|-..|+..-..+|..+.. .... + +..++|..|||||..+|+.|.=+.
T Consensus 211 Lr~~Gl~~RA~~I~~~A~~i~~~~~G~~~L~~l~~~~~~~~~~~L~~LpGIGp~TA~~ill~a 273 (360)
T 2xhi_A 211 LRKLGLGYRARYVSASARAILEEQGGLAWLQQLRESSYEEAHKALCILPGVGTCVADKICLMA 273 (360)
T ss_dssp HHHTTCTTHHHHHHHHHHHHHHTTCTHHHHHGGGTSCHHHHHHHHTTSTTCCHHHHHHHHHHH
T ss_pred HHHcCCcHHHHHHHHHHHHHHhccCCccCHHHHhcCCHHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence 3344554576666667666543 1111 1 234679999999999999987543
No 221
>1px5_A 2'-5'-oligoadenylate synthetase 1; 5-stranded antiparalel beta sheet, four helix bundle, transferase; HET: YCM; 1.74A {Sus scrofa} SCOP: a.160.1.2 d.218.1.6
Probab=42.82 E-value=26 Score=35.34 Aligned_cols=26 Identities=31% Similarity=0.534 Sum_probs=14.6
Q ss_pred EEEecccccccCCcCC--CeeEEEecCC
Q 009303 370 IILCGGSYRRGKASCG--DLDVVIMHPD 395 (538)
Q Consensus 370 ~v~~~Gs~RRgke~~~--DVDiLit~~~ 395 (538)
.+..+|||.||-..-| |||++|--+.
T Consensus 56 ~v~~~GSyargT~lrg~sDiDlvV~l~~ 83 (349)
T 1px5_A 56 KVVKGGSSGKGTTLRGRSDADLVVFLTK 83 (349)
T ss_dssp EEEEEEEC--------CEEEEEEEEEES
T ss_pred EEEEecCcCCCcccCCCCceeEEEEECC
Confidence 5778999999998865 9999995543
No 222
>3ci0_K Pseudopilin GSPK; general secretory pathway, pseudopilus, type 4 pilin biogene methylation, protein transport; 2.20A {Escherichia coli} SCOP: a.60.16.1 a.60.16.1 d.24.1.6
Probab=42.75 E-value=6.3 Score=39.30 Aligned_cols=75 Identities=11% Similarity=0.273 Sum_probs=43.9
Q ss_pred cccchhhhcCCCCCCHHHHHHHHHHHHhCCc--chhHHHHh-h-chhHHHHHHhhccCCCHHHHHHHHHh----CCCCHH
Q 009303 249 KIESADQVKGLPGIGKSMQDHIQEIVTTGKL--SKLEHFEK-D-EKVRTISLFGEVWGIGPATAQKLYEK----GHRTLD 320 (538)
Q Consensus 249 ~i~~~~~l~~lpgIG~~ia~kI~Eil~tG~~--~~le~l~~-~-~~~~~l~lf~~I~GvGpktA~~ly~~----Girtle 320 (538)
++.+.+||..++|+...+-.++..++.---. ..+ .+.. + ++..+|..+ --+|||+..|+++.+. |+.+++
T Consensus 153 ~~~~~~EL~~v~G~~~~~~~~l~p~vtv~p~~~~~i-NiNTa~~~~a~vL~al-~~~~i~~~~A~~ii~~R~~~gf~~v~ 230 (298)
T 3ci0_K 153 PLADISEMRVVQGMDAGLYQKLKPLVCALPMTRQQI-NINTLDVTQSVILEAL-FDPWLSPVQARALLQQRPAKGWEDVD 230 (298)
T ss_dssp CCSSGGGGGGSTTCCHHHHHHHTTTEECCSCSSCCE-ETTTCCGGGTHHHHHH-TC-------CCHHHHTCCTTCCSCHH
T ss_pred CCCCHHHHHhccCCCHHHHHhhcCeEEEecCCCcce-eccccChhhHHHHHHh-cCCCCCHHHHHHHHHhcccCCCCCHH
Confidence 5788899999999999999998887754210 111 1111 0 122233322 1289999999999973 899999
Q ss_pred HHhhc
Q 009303 321 DLKNE 325 (538)
Q Consensus 321 dL~~~ 325 (538)
|+.+.
T Consensus 231 ~~~~~ 235 (298)
T 3ci0_K 231 QFLAQ 235 (298)
T ss_dssp HHHTS
T ss_pred HHHhh
Confidence 99853
No 223
>3k4g_A DNA-directed RNA polymerase subunit alpha; bacterial transcription regulation, DNA-directed RNA polymer nucleotidyltransferase; HET: MLY; 2.05A {Escherichia coli k-12} SCOP: a.60.3.1 PDB: 3n4m_B* 1lb2_B* 3n97_B* 1xs9_D
Probab=42.30 E-value=7.9 Score=31.48 Aligned_cols=42 Identities=19% Similarity=0.240 Sum_probs=31.5
Q ss_pred CCCHHHHHHHHHhCCCCHHHHhhc--cCcchhhhccccchhhhc
Q 009303 302 GIGPATAQKLYEKGHRTLDDLKNE--DSLTHSQRLGLKYFDDIK 343 (538)
Q Consensus 302 GvGpktA~~ly~~GirtledL~~~--~~L~~~q~~Glk~~ed~~ 343 (538)
++.+....-|-+.||.|+.||.+. ..|-++.+||-+..+++.
T Consensus 18 ~LSvRa~NcLkragI~Tv~dL~~~se~dLlki~n~G~KSl~EI~ 61 (86)
T 3k4g_A 18 ELTVRSANCLXAEAIHYIGDLVQRTEVELLXTPNLGXXSLTEIX 61 (86)
T ss_dssp CCCHHHHHHHHHTTCCBHHHHHHSCHHHHHTSTTCCHHHHHHHH
T ss_pred CCCHHHHHHHHHcCCCcHHHHHhCCHHHHhhccccCcccHHHHH
Confidence 677888888888899999999853 357777888877655443
No 224
>3gfk_B DNA-directed RNA polymerase subunit alpha; protein-protein complex, cytoplasm, redox-active center, stress response, transcription; 2.30A {Bacillus subtilis} SCOP: a.60.3.1
Probab=42.10 E-value=7.2 Score=31.20 Aligned_cols=43 Identities=21% Similarity=0.394 Sum_probs=32.5
Q ss_pred cCCCHHHHHHHHHhCCCCHHHHhhc--cCcchhhhccccchhhhc
Q 009303 301 WGIGPATAQKLYEKGHRTLDDLKNE--DSLTHSQRLGLKYFDDIK 343 (538)
Q Consensus 301 ~GvGpktA~~ly~~GirtledL~~~--~~L~~~q~~Glk~~ed~~ 343 (538)
-++.+....-|-+.||.|+.||.+. ..|..+.+||-+..+++.
T Consensus 21 L~LS~Ra~NcLk~agI~Tv~dL~~~se~dLlki~n~G~kSl~EI~ 65 (79)
T 3gfk_B 21 LDLSVRSYNCLKRAGINTVQELANKTEEDMMKVRNLGRKSLEEVK 65 (79)
T ss_dssp SCCBHHHHHHHHHTTCCBHHHHTTCCHHHHTTSTTCHHHHHHHHH
T ss_pred hCCCHHHHHHHHHhCCCCHHHHHhCCHHHHHHcCCCCHhHHHHHH
Confidence 3667777788888899999999853 357778888877766554
No 225
>3i0w_A 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8-OXOG, 8OXOG, glycosylase, cytosine, hydrolase,lyase/DNA complex; HET: 8OG; 1.73A {Clostridium acetobutylicum} PDB: 3i0x_A* 3f10_A* 3f0z_A
Probab=41.61 E-value=27 Score=34.50 Aligned_cols=46 Identities=17% Similarity=0.229 Sum_probs=32.1
Q ss_pred CCChhHHHHHHHHHHHhcCCcccc---------chhhhcCCCCCCHHHHHHHHHH
Q 009303 228 GEDRRSFSYYKAIPVIEKLPFKIE---------SADQVKGLPGIGKSMQDHIQEI 273 (538)
Q Consensus 228 g~~~r~~aY~rAa~~l~~l~~~i~---------~~~~l~~lpgIG~~ia~kI~Ei 273 (538)
|-.+|+..-..+|..+..-...+. ..++|..|||||+.+|+.|.=+
T Consensus 176 g~g~Ra~~I~~~A~~i~~g~~~l~~l~~~~~~~~~~~L~~lpGIG~~TA~~ill~ 230 (290)
T 3i0w_A 176 TAGFRAKYLKDTVDRIYNGELNLEYIKSLNDNECHEELKKFMGVGPQVADCIMLF 230 (290)
T ss_dssp TCGGGHHHHHHHHHHHHTTSSCHHHHHHSCHHHHHHHHTTSTTCCHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHhCCCCHHHHhcCCHHHHHHHHHhCCCcCHHHHHHHHHH
Confidence 444577777777777764322211 2367999999999999999854
No 226
>1pu6_A 3-methyladenine DNA glycosylase; helix-hairpin-helix, base excision repair, hydrolase; HET: KCX; 1.64A {Helicobacter pylori} SCOP: a.96.1.5 PDB: 1pu7_A* 1pu8_A*
Probab=41.05 E-value=19 Score=34.04 Aligned_cols=43 Identities=21% Similarity=0.128 Sum_probs=28.2
Q ss_pred hHHHHHHHHHHHhc-CCc----cc-cchhhhcCCCCCCHHHHHHHHHHH
Q 009303 232 RSFSYYKAIPVIEK-LPF----KI-ESADQVKGLPGIGKSMQDHIQEIV 274 (538)
Q Consensus 232 r~~aY~rAa~~l~~-l~~----~i-~~~~~l~~lpgIG~~ia~kI~Eil 274 (538)
|+..-..+|..+.. ... ++ ...++|.+|||||..+|+.|--+.
T Consensus 93 KA~~L~~~a~~i~~~~~~l~~~~~~~~~~~L~~lpGIG~kTA~~il~~a 141 (218)
T 1pu6_A 93 KAKRLIDLSGNILKDFQSFENFKQEVTREWLLDQKGIGKESADAILCYA 141 (218)
T ss_dssp HHHHHHHHHHHHHHHHSSHHHHHHHCCHHHHHTSTTCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcCChhhccchHHHHHHHcCCCcCHHHHHHHHHHH
Confidence 55555566655532 211 11 345779999999999999997654
No 227
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=40.96 E-value=12 Score=36.99 Aligned_cols=29 Identities=31% Similarity=0.526 Sum_probs=25.9
Q ss_pred HhhccCCCHHHHHHHHHhCCCCHHHHhhc
Q 009303 297 FGEVWGIGPATAQKLYEKGHRTLDDLKNE 325 (538)
Q Consensus 297 f~~I~GvGpktA~~ly~~GirtledL~~~ 325 (538)
+.+++||++..+++|-+.||.|++||...
T Consensus 5 ~~~l~gi~~~~~~kL~~~gi~t~~~~~~~ 33 (322)
T 2i1q_A 5 LTDLPGVGPSTAEKLVEAGYIDFMKIATA 33 (322)
T ss_dssp CTTSTTCCHHHHHHHHHHTCCSHHHHHTC
T ss_pred HhhcCCCCHHHHHHHHHcCCCcHHHHHhC
Confidence 34788999999999999999999999854
No 228
>4b21_A Probable DNA-3-methyladenine glycosylase 2; hydrolase-DNA complex, helix-hairpin-helix; HET: BGC 3DR; 1.45A {Schizosaccharomyces pombe} PDB: 4b22_A* 4b23_A* 4b24_A*
Probab=40.89 E-value=21 Score=34.13 Aligned_cols=42 Identities=12% Similarity=0.143 Sum_probs=27.3
Q ss_pred hHHHHHHHHHHHhc--CC--ccc------cchhhhcCCCCCCHHHHHHHHHH
Q 009303 232 RSFSYYKAIPVIEK--LP--FKI------ESADQVKGLPGIGKSMQDHIQEI 273 (538)
Q Consensus 232 r~~aY~rAa~~l~~--l~--~~i------~~~~~l~~lpgIG~~ia~kI~Ei 273 (538)
|+..-..+|..+.. +| ..+ +..++|..|||||..+|+.|-=+
T Consensus 118 Ka~~l~~~A~~~~~g~~p~l~~l~~~~~~~~~~~L~~l~GIG~~TA~~ill~ 169 (232)
T 4b21_A 118 KSQEIHIVAEAALNKQIPSKSEIEKMSEEELMESLSKIKGVKRWTIEMYSIF 169 (232)
T ss_dssp HHHHHHHHHHHHHTTCSCCHHHHHHSCHHHHHHHHTTSTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHcCCHHHHHHHHHhCCCcCHHHHHHHHHH
Confidence 45555556666654 22 011 23467999999999999988744
No 229
>4e9f_A Methyl-CPG-binding domain protein 4; HHH DNA glycosylase family, hydrolase-DNA complex; HET: DNA 3DR; 1.79A {Homo sapiens} PDB: 4e9e_A* 4e9g_A* 4e9h_A* 4ea5_A* 4dk9_A* 1ngn_A 4ea4_A* 4ew4_A* 4evv_A* 4ew0_A* 3iho_A
Probab=40.79 E-value=11 Score=34.09 Aligned_cols=19 Identities=21% Similarity=0.121 Sum_probs=15.5
Q ss_pred HHHHhhccCCCHHHHHHHH
Q 009303 294 ISLFGEVWGIGPATAQKLY 312 (538)
Q Consensus 294 l~lf~~I~GvGpktA~~ly 312 (538)
.+.++++||||+.||..+-
T Consensus 103 ~~~L~~LpGVG~yTAdav~ 121 (161)
T 4e9f_A 103 WKYPIELHGIGKYGNDSYR 121 (161)
T ss_dssp CSSGGGSTTCCHHHHHHHH
T ss_pred hhhhhcCCCchHHHHHHHH
Confidence 3456799999999999864
No 230
>3gqc_A DNA repair protein REV1; protein-DNA complex, DNA damage, DNA repair, DNA synthesis, binding, magnesium, metal-binding; HET: DNA DOC DCP; 2.50A {Homo sapiens}
Probab=40.56 E-value=32 Score=36.81 Aligned_cols=53 Identities=30% Similarity=0.550 Sum_probs=38.7
Q ss_pred hcCCCCCCHHHHHHHHHHHHhCCcchhHHHHhhchhHHHHHHhhccCCCHHHHHHHHHh--CCCC
Q 009303 256 VKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK--GHRT 318 (538)
Q Consensus 256 l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~~--Girt 318 (538)
+..|||||+.+++++..+ | +..+.+|.+-.+..+.+.| |+++...||+. |+..
T Consensus 317 V~~l~GIG~~t~~kL~~l---G-I~TigDLa~~~~~~L~~~f------G~~~g~~L~~~a~GiD~ 371 (504)
T 3gqc_A 317 VTNLPGVGHSMESKLASL---G-IKTCGDLQYMTMAKLQKEF------GPKTGQMLYRFCRGLDD 371 (504)
T ss_dssp GGGSTTCCHHHHHHHHHT---T-CCBHHHHTTSCHHHHHHHH------CHHHHHHHHHHTTTCCC
T ss_pred hhHhhCcCHHHHHHHHHc---C-CCcHHHHHhccHHHHHHhh------ChhHHHHHHHHhcCCCc
Confidence 688999999999988764 3 5667777664444455555 67889999974 8853
No 231
>2h56_A DNA-3-methyladenine glycosidase; 10174367, EC 3.2.2.-, struc genomics, PSI-2, protein structure initiative, joint center structural genomics; 2.55A {Bacillus halodurans}
Probab=40.54 E-value=16 Score=35.01 Aligned_cols=22 Identities=14% Similarity=0.335 Sum_probs=18.5
Q ss_pred hhhhcCCCCCCHHHHHHHHHHH
Q 009303 253 ADQVKGLPGIGKSMQDHIQEIV 274 (538)
Q Consensus 253 ~~~l~~lpgIG~~ia~kI~Eil 274 (538)
.++|..|||||..+|+.|--+.
T Consensus 137 ~~~L~~lpGIG~kTA~~ill~a 158 (233)
T 2h56_A 137 IEKLTAIKGIGQWTAEMFMMFS 158 (233)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHT
T ss_pred HHHHHhCCCcCHHHHHHHHHHh
Confidence 4679999999999999887543
No 232
>2zc2_A DNAD-like replication protein; GI 24377835, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Streptococcus mutans UA159}
Probab=40.46 E-value=15 Score=28.66 Aligned_cols=18 Identities=22% Similarity=0.303 Sum_probs=16.1
Q ss_pred HHHHHHHHhCCCCHHHHh
Q 009303 306 ATAQKLYEKGHRTLDDLK 323 (538)
Q Consensus 306 ktA~~ly~~GirtledL~ 323 (538)
+.+..|.+.||+|++|++
T Consensus 60 ~Il~~W~~~gi~T~e~a~ 77 (78)
T 2zc2_A 60 AILRNWRHEGISTLRQVE 77 (78)
T ss_dssp HHHHHHHHTTCCSHHHHC
T ss_pred HHHHHHHHcCCCCHHHHh
Confidence 678999999999999985
No 233
>1mpg_A ALKA, 3-methyladenine DNA glycosylase II; DNA repair, base excision, methylation, ALK hydrolase; 1.80A {Escherichia coli} SCOP: a.96.1.3 d.129.1.2 PDB: 1diz_A 1pvs_A* 3cvs_A* 3cvt_A* 3cw7_A* 3cwa_A* 3cws_A* 3cwt_A* 3cwu_A* 3d4v_A* 3ogd_A* 3oh9_A* 3oh6_A*
Probab=39.50 E-value=29 Score=34.02 Aligned_cols=52 Identities=21% Similarity=0.253 Sum_probs=35.3
Q ss_pred HcCC-ChhHHHHHHHHHHHhc--CCccc-cc----hhhhcCCCCCCHHHHHHHHHHHHhCC
Q 009303 226 ALGE-DRRSFSYYKAIPVIEK--LPFKI-ES----ADQVKGLPGIGKSMQDHIQEIVTTGK 278 (538)
Q Consensus 226 ~~g~-~~r~~aY~rAa~~l~~--l~~~i-~~----~~~l~~lpgIG~~ia~kI~Eil~tG~ 278 (538)
-.|- +.|+..-.++|..+.. ++... .+ .++|..|||||..+|+.|.-+. -|.
T Consensus 171 ~~G~~~~ra~~i~~~A~~~~~~~~~~~~~~~~~~~~~~L~~lpGIG~~TA~~ill~~-lg~ 230 (282)
T 1mpg_A 171 ALGMPLKRAEALIHLANAALEGTLPMTIPGDVEQAMKTLQTFPGIGRWTANYFALRG-WQA 230 (282)
T ss_dssp HTTSCHHHHHHHHHHHHHHHHTCSCSSCCSCHHHHHHHHTTSTTCCHHHHHHHHHHH-SCC
T ss_pred HcCCCHHHHHHHHHHHHHHHcCCCCccccCCHHHHHHHHhcCCCcCHHHHHHHHHHh-CCC
Confidence 3454 3577777788877764 43222 22 4779999999999999987543 344
No 234
>3bq0_A POL IV, DBH, DNA polymerase IV; Y-family, lesion bypass; HET: DNA; 2.60A {Sulfolobus acidocaldarius} SCOP: d.240.1.1 e.8.1.7 PDB: 3bq1_A* 3bq2_A* 1k1q_A 1k1s_A
Probab=39.32 E-value=28 Score=35.15 Aligned_cols=95 Identities=16% Similarity=0.216 Sum_probs=53.3
Q ss_pred hcCCCCCCHHHHHHHHHHHHhCCcchhHHHHhhchhHHHHHHhhccCCCHHHHHHHHHh--CCCCHHHHhhccCcchhhh
Q 009303 256 VKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK--GHRTLDDLKNEDSLTHSQR 333 (538)
Q Consensus 256 l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~~--GirtledL~~~~~L~~~q~ 333 (538)
+..|||||+.+++++..+ -+..+.+|.+-.+....+.| |+.+..++|+. |+..- .+... . .+.
T Consensus 181 v~~l~GiG~~~~~~L~~~----Gi~t~~dL~~~~~~~L~~~f------G~~~g~~l~~~a~G~d~~-~v~~~---~-~ks 245 (354)
T 3bq0_A 181 IDEIPGIGSVLARRLNEL----GIQKLRDILSKNYNELEKIT------GKAKALYLLKLAQNKYSE-PVENK---S-KIP 245 (354)
T ss_dssp STTSTTCCHHHHHHHTTT----TCCBGGGGGGSCHHHHHHHH------CHHHHHHHHHHHTTCCCC-CCCSE---E-CCC
T ss_pred cccccCcCHHHHHHHHHc----CCccHHHHhcCCHHHHHHHH------CHHHHHHHHHHhCCCCCC-CCcCC---C-Cce
Confidence 688899999888876542 35667777664444455555 66768888875 88641 11111 1 123
Q ss_pred ccccchhhhccCc-CHHHHHH-HHHHHHHHhhhcCC
Q 009303 334 LGLKYFDDIKTRI-PRHEVEQ-MERLLQKAGEEVLP 367 (538)
Q Consensus 334 ~Glk~~ed~~~~i-~r~Ea~~-i~~iv~~~~~~~~p 367 (538)
+|.. ..|...+ ..+++.. +..+..+++..+..
T Consensus 246 i~~~--~tf~~~~~~~~~l~~~l~~l~~~l~~rL~~ 279 (354)
T 3bq0_A 246 HGRY--LTLPYNTRDVKVILPYLKKAINEAYNKVNG 279 (354)
T ss_dssp EEEE--EEEEEEECCHHHHHHHHHHHHHHHHTTTSS
T ss_pred eEEe--EeCCCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 3311 1122233 4556555 56666666655444
No 235
>4gns_A Chitin biosynthesis protein CHS5; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=37.77 E-value=14 Score=33.95 Aligned_cols=74 Identities=20% Similarity=0.263 Sum_probs=49.4
Q ss_pred hHHHHHHHHHHhcCCEEEeec-CCCccEEEEcCCh--H-HHHHHHHhhhcccCccccccchHHHHHhcCcccCccccccc
Q 009303 34 RRLQIWRQKLVQMGATVEEKL-SKKVTHVLAMDLE--A-LLQQVSKQHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIK 109 (538)
Q Consensus 34 ~R~~~l~~~~~~~G~~V~~~l-s~~VTHVV~~~~~--~-~~~~l~~~~~~~~~~~lV~~~Wl~ecik~g~lv~e~~y~l~ 109 (538)
+.++| .+-+---|++-...- .-..||.|..|.. . -.+.++.. ..+.-||.++|+-.|--+.+.|-...|-+.
T Consensus 179 sdlqi-sqclshigarplqrhvaidtthfvcndldneesneelirak---hnnipivrpewvracevekrivgvrgfyld 254 (290)
T 4gns_A 179 SDLQI-SQCLSHIGARPLQRHVAIDTTHFVCNDLDNEESNEELIRAK---HNNIPIVRPEWVRACEVEKRIVGVRGFYLD 254 (290)
T ss_dssp CHHHH-HHHHHHTTCCCCBSSCCTTCCEEECSCCTTCTTCHHHHHHH---HTTCCEECTHHHHHHHHTTSCCCSGGGBTT
T ss_pred hhccH-HHHHHHhCCchhhheeeeecceeeecCCCcccchHHHHhhh---ccCCCccCHHHHHHHhhhheeeeeeeEEEc
Confidence 34555 456666788765543 4568999985432 1 11223322 123679999999999999999999999886
Q ss_pred cC
Q 009303 110 LD 111 (538)
Q Consensus 110 ~~ 111 (538)
.+
T Consensus 255 ad 256 (290)
T 4gns_A 255 AD 256 (290)
T ss_dssp SC
T ss_pred cc
Confidence 43
No 236
>1coo_A RNA polymerase alpha subunit; transcription regulation, nucleotidyl transferase; NMR {Escherichia coli} SCOP: a.60.3.1 PDB: 2jzb_A
Probab=37.73 E-value=28 Score=28.91 Aligned_cols=23 Identities=17% Similarity=0.427 Sum_probs=20.9
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHh
Q 009303 254 DQVKGLPGIGKSMQDHIQEIVTT 276 (538)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~Eil~t 276 (538)
+++.+|+|+|++..+.|.+.|+.
T Consensus 56 ~dLlki~n~G~KSl~EI~~~L~~ 78 (98)
T 1coo_A 56 VELLKTPNLGKKSLTEIKDVLAS 78 (98)
T ss_dssp HHHTTSTTCCHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHHH
Confidence 67899999999999999999964
No 237
>4f4y_A POL IV, DNA polymerase IV; Y-family polymerase, transferase-DNA complex; HET: DNA DCP; 2.34A {Sulfolobus acidocaldarius} PDB: 3bq0_A* 3bq1_A* 3bq2_A* 4hyk_A* 1k1q_A 1k1s_A
Probab=37.13 E-value=28 Score=35.46 Aligned_cols=95 Identities=16% Similarity=0.259 Sum_probs=54.7
Q ss_pred hcCCCCCCHHHHHHHHHHHHhCCcchhHHHHhhchhHHHHHHhhccCCCHHHHHHHHHh--CCCCHHHHhhccCcchhhh
Q 009303 256 VKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK--GHRTLDDLKNEDSLTHSQR 333 (538)
Q Consensus 256 l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~~--GirtledL~~~~~L~~~q~ 333 (538)
+..|||||+.+++++..+ | +..+.+|.+-.+....+.| |++...+||+. |+..- .+... .. +.
T Consensus 181 v~~l~GiG~~~~~~L~~~---G-I~Ti~dL~~~~~~~L~~~f------G~~~g~~l~~~a~G~d~~-~v~~~---~~-ks 245 (362)
T 4f4y_A 181 IDEIPGIGSVLARRLNEL---G-IQKLRDILSKNYNELEKIT------GKAKALYLLKLAQDEYNE-PIRTR---VR-KS 245 (362)
T ss_dssp STTSTTCCSTTHHHHHHT---T-CCBGGGGTTSCHHHHHHHH------CHHHHHHHHHHHTTCCCC-CCCCC---CC-CE
T ss_pred hhhccCCCHHHHHHHHHc---C-CChHHHHhcCCHHHHHHHh------ChHHHHHHHHHhcCCCCC-cCccC---CC-cc
Confidence 678999999999987764 3 5566666654444455556 77888999974 88642 12111 11 33
Q ss_pred ccccchhhhccCc-CHHHHHH-HHHHHHHHhhhcCC
Q 009303 334 LGLKYFDDIKTRI-PRHEVEQ-MERLLQKAGEEVLP 367 (538)
Q Consensus 334 ~Glk~~ed~~~~i-~r~Ea~~-i~~iv~~~~~~~~p 367 (538)
+|.. ..|...+ ..+++.. +..+..+++..+..
T Consensus 246 i~~~--~tf~~~~~~~~~l~~~l~~l~~~l~~rLr~ 279 (362)
T 4f4y_A 246 IGRY--LTLPYNTRDVKVILPYLKKAINEAYNKVNG 279 (362)
T ss_dssp EEEE--EEEEEEECCHHHHHHHHHHHHHHHHHHCSS
T ss_pred eEEE--EecCCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 4321 1122233 2555554 46666666555444
No 238
>2csb_A Topoisomerase V, TOP61; topoisomerase IB, helix-turn-helix, helix-H helix, HHH motif, three helix bundle, methanopyrus kandleri isomerase; 2.30A {Methanopyrus kandleri} SCOP: a.60.2.4 a.60.2.4 a.60.2.4 a.60.2.4 a.267.1.1 PDB: 2csd_A
Probab=36.53 E-value=48 Score=32.40 Aligned_cols=65 Identities=23% Similarity=0.429 Sum_probs=36.1
Q ss_pred HHHHHHhCCcchhHHHHhhchhHHHHHHhhccCCCHHHHHHHHHh-CC-CCHHHHhhcc---Ccchhhhccc
Q 009303 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GH-RTLDDLKNED---SLTHSQRLGL 336 (538)
Q Consensus 270 I~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~~-Gi-rtledL~~~~---~L~~~q~~Gl 336 (538)
|+-+.+.|++++ |..++.... .+..+++-.|||.|||.+|... |- .-+.+|-..- +|....+.|-
T Consensus 388 iermyeegrlse-eayraavei-qlaeltkkegvgrktaerllrafgnpervkqlarefeieklasvegvge 457 (519)
T 2csb_A 388 IERMYEEGRLSE-EAYRAAVEI-QLAELTKKEGVGRKTAERLLRAFGNPERVKQLAREFEIEKLASVEGVGE 457 (519)
T ss_dssp HHHHHHHTSSCH-HHHHHHHHH-HHHHHHTSTTCCHHHHHHHHHHHSSHHHHHHHHHTTCHHHHHTSTTCSH
T ss_pred HHHHHHcccccH-HHHHHHHHH-HHHHHhhhcccchhHHHHHHHHhCCHHHHHHHHHHHhHHHHhhccchHH
Confidence 444455666654 223332222 3455679999999999999886 52 2333333221 3444555553
No 239
>2pbe_A AAD6, aminoglycoside 6-adenylyltransferase; NYSGXRC, aminoglycoside 6-adenyltransferase, PSI-2, structural genomics; 2.65A {Bacillus subtilis} SCOP: a.160.1.5 d.218.1.13
Probab=36.33 E-value=90 Score=30.74 Aligned_cols=43 Identities=19% Similarity=0.151 Sum_probs=22.6
Q ss_pred HHHHHHHHHhhhcCCCeE-EEecccccccC---CcCCCeeEEEecCCcc
Q 009303 353 QMERLLQKAGEEVLPEVI-ILCGGSYRRGK---ASCGDLDVVIMHPDRK 397 (538)
Q Consensus 353 ~i~~iv~~~~~~~~p~~~-v~~~Gs~RRgk---e~~~DVDiLit~~~~~ 397 (538)
-+..|+.-+. ..+.++ |.+.||+-++. -.=.|+||++...+..
T Consensus 9 m~~~i~~~a~--~d~rI~Av~l~GSr~n~~~~~D~fSDyDi~~vv~d~~ 55 (294)
T 2pbe_A 9 MMDIFLDFAL--NDERIRLVTLEGSRTNRNIPPDNFQDYDISYFVTDVE 55 (294)
T ss_dssp HHHHHHHHHH--HCTTEEEEEEC------------CCCEEEEEEESCHH
T ss_pred HHHHHHHHHc--CCcCEEEEEEecCCCCCCCCCCCcccceEEEEEcCch
Confidence 3444444433 367785 67899976644 6678999999877653
No 240
>2aq4_A DNA repair protein REV1; polymerase, PAD, N-digit, G-loop, transferase; HET: DNA DOC DCP; 2.32A {Saccharomyces cerevisiae} PDB: 3bjy_A* 3osp_A*
Probab=34.97 E-value=33 Score=35.82 Aligned_cols=56 Identities=18% Similarity=0.268 Sum_probs=37.0
Q ss_pred hcCCCCCCHHHHHHHHHHHHhCCcchhHHHHhh-chhHHHHHHhhccCCCHHHHHHHHHh--CCCCH
Q 009303 256 VKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKD-EKVRTISLFGEVWGIGPATAQKLYEK--GHRTL 319 (538)
Q Consensus 256 l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~-~~~~~l~lf~~I~GvGpktA~~ly~~--Girtl 319 (538)
+..|||||+.+++++..-+ .-+..+.+|.+- .+....+.| |++...++|+. |+..-
T Consensus 243 v~~l~GiG~~~~~~L~~~~--~GI~ti~dL~~~~~~~~L~~~f------G~~~g~~l~~~a~G~d~~ 301 (434)
T 2aq4_A 243 LDDLPGVGHSTLSRLESTF--DSPHSLNDLRKRYTLDALKASV------GSKLGMKIHLALQGQDDE 301 (434)
T ss_dssp GGGSTTCCHHHHHHHHHHT--TCCCSHHHHHHHCCHHHHHHHH------CSSHHHHHHHHTTTCCCH
T ss_pred cccccCcCHHHHHHHHHhc--CCceEHHHHHhcCCHHHHHHHh------CHHHHHHHHHHhcCCCcc
Confidence 6789999999998887721 124556666554 344444555 56677888875 98763
No 241
>2yg9_A DNA-3-methyladenine glycosidase II, putative; hydrolase, DNA repair; 1.95A {Deinococcus radiodurans} PDB: 2yg8_A
Probab=33.10 E-value=39 Score=32.01 Aligned_cols=42 Identities=14% Similarity=0.154 Sum_probs=27.5
Q ss_pred hHHHHHHHHHHHhcCCcccc---------chhhhcCCCCCCHHHHHHHHHH
Q 009303 232 RSFSYYKAIPVIEKLPFKIE---------SADQVKGLPGIGKSMQDHIQEI 273 (538)
Q Consensus 232 r~~aY~rAa~~l~~l~~~i~---------~~~~l~~lpgIG~~ia~kI~Ei 273 (538)
|+..-..+|..+..=...+. ..++|..|||||..+|+.|--+
T Consensus 115 KA~~i~~lA~~~~~g~~~l~~l~~~~~~e~~~~L~~l~GIG~~TA~~ill~ 165 (225)
T 2yg9_A 115 KVRTVQAAAAAAVSGQIDFAHLSGQPDELVIAELVQLPGIGRWTAEMFLLF 165 (225)
T ss_dssp HHHHHHHHHHHHHTTSSCGGGCTTSCHHHHHHHHHTSTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcCHHHHhcCCHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 55555666666654111111 1367999999999999988744
No 242
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=32.91 E-value=67 Score=31.45 Aligned_cols=62 Identities=24% Similarity=0.425 Sum_probs=42.2
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHhCCcchhHHHHhhchhHHHHHHhhccCCCHHHHHHHHHh-------CCCCHHHHh
Q 009303 254 DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-------GHRTLDDLK 323 (538)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~~-------GirtledL~ 323 (538)
.++..||||++.++.|..+ .| +.-++++.... .+.|..+.|+..++|.+|.+. |+.|-.++.
T Consensus 3 ~~~~~l~gi~~~~~~kL~~---~g-i~t~~~~~~~~----~~~L~~~~gis~~~a~~~i~~a~~~~~~~~~~~~~~~ 71 (322)
T 2i1q_A 3 DNLTDLPGVGPSTAEKLVE---AG-YIDFMKIATAT----VGELTDIEGISEKAAAKMIMGARDLCDLGFKSGIDLL 71 (322)
T ss_dssp --CTTSTTCCHHHHHHHHH---HT-CCSHHHHHTCC----HHHHHTSTTCCHHHHHHHHHHHHHHTTCSCCCTHHHH
T ss_pred ccHhhcCCCCHHHHHHHHH---cC-CCcHHHHHhCC----HHHHHHhhCcCHHHHHHHHHHHHHhhhhcCCcHHHHH
Confidence 4688899999999988776 34 45566665433 233558999999999888752 566656554
No 243
>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*
Probab=32.55 E-value=19 Score=36.67 Aligned_cols=22 Identities=23% Similarity=0.365 Sum_probs=18.4
Q ss_pred HHHHHhhccCCCHHHHHHHHHh
Q 009303 293 TISLFGEVWGIGPATAQKLYEK 314 (538)
Q Consensus 293 ~l~lf~~I~GvGpktA~~ly~~ 314 (538)
.++.|++++|||++||..+--.
T Consensus 116 ~~~~L~~l~GIG~~tA~~il~~ 137 (369)
T 3fsp_A 116 DPDEFSRLKGVGPYTVGAVLSL 137 (369)
T ss_dssp SHHHHHTSTTCCHHHHHHHHHH
T ss_pred HHHHHhcCCCcCHHHHHHHHHH
Confidence 5667779999999999987654
No 244
>3s6i_A DNA-3-methyladenine glycosylase 1; DNA glycosylase, DNA repair, helix-hairpin-helix (HHH), ABAS tetrahydrofuran (THF); HET: 3DR; 2.28A {Schizosaccharomyces pombe}
Probab=32.34 E-value=36 Score=32.33 Aligned_cols=46 Identities=15% Similarity=0.204 Sum_probs=29.1
Q ss_pred CCCh-hHHHHHHHHHHHhc--CCc--cccc------hhhhcCCCCCCHHHHHHHHHH
Q 009303 228 GEDR-RSFSYYKAIPVIEK--LPF--KIES------ADQVKGLPGIGKSMQDHIQEI 273 (538)
Q Consensus 228 g~~~-r~~aY~rAa~~l~~--l~~--~i~~------~~~l~~lpgIG~~ia~kI~Ei 273 (538)
|-.. |+..-..+|..+.+ +|. .+.. .++|..|||||..+|+.|--+
T Consensus 102 G~~~rKa~~i~~~A~~~~~g~~p~~~~l~~~~~~e~~~~L~~l~GIG~~TA~~ill~ 158 (228)
T 3s6i_A 102 GFSARKIDSLKSIAEATISGLIPTKEEAERLSNEELIERLTQIKGIGRWTVEMLLIF 158 (228)
T ss_dssp TCCHHHHHHHHHHHHHHHHTSSCCHHHHTTSCHHHHHHHHTTSTTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCCCChHHHhcCCHHHHHHHHHhCCCcCHHHHHHHHHH
Confidence 4443 45555666666653 221 1111 467999999999999988743
No 245
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=31.11 E-value=53 Score=34.76 Aligned_cols=40 Identities=20% Similarity=0.242 Sum_probs=29.7
Q ss_pred HHHHHHhhhcCCCeEEEecccccccCCc-CCCeeEEEecCC
Q 009303 356 RLLQKAGEEVLPEVIILCGGSYRRGKAS-CGDLDVVIMHPD 395 (538)
Q Consensus 356 ~iv~~~~~~~~p~~~v~~~Gs~RRgke~-~~DVDiLit~~~ 395 (538)
..|+++.....|+++|.+-||+.=|--. .+|||++|..++
T Consensus 160 ~~le~ii~~~fP~a~V~~FGS~~tGL~lp~SDIDlvl~~~~ 200 (464)
T 3pq1_A 160 SLIEDMAAAYFPDCIVRPFGSSVNTFGKLGCDLDMFLDLDE 200 (464)
T ss_dssp HHHHHHHTTTSTTCEEEEEGGGTSSCCBTTCCEEEEEECC-
T ss_pred HHHHHHHHHHCCCCEEEEeCCCccCCCCCCCCeEEEEecCC
Confidence 3445555557899999999999987654 679999986543
No 246
>2ziu_A MUS81 protein; helix-hairpin-helix, alternative splicing, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; 2.70A {Danio rerio} PDB: 2ziv_A 2ziw_A
Probab=30.57 E-value=32 Score=34.14 Aligned_cols=59 Identities=22% Similarity=0.391 Sum_probs=38.6
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHhCCcchhH-HHHhh-chhHHHHHHhhcc-C-----CCHHHHHHHHHh
Q 009303 254 DQVKGLPGIGKSMQDHIQEIVTTGKLSKLE-HFEKD-EKVRTISLFGEVW-G-----IGPATAQKLYEK 314 (538)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~Eil~tG~~~~le-~l~~~-~~~~~l~lf~~I~-G-----vGpktA~~ly~~ 314 (538)
.+|..||||+...|..|.+- -++...|- .++.- .+....+||.++. | |||..++++|+.
T Consensus 237 ~mL~~IpGVs~~~A~~I~~~--ypTp~~L~~Ay~~~~~~~e~~~lL~~i~~g~~~r~IG~~lS~kI~~~ 303 (311)
T 2ziu_A 237 RQLMQISGVSGDKAAAVLEH--YSTVSSLLQAYDKCSSETEKEKLLSSVKYGKLKRNLGPALSRTIYQL 303 (311)
T ss_dssp HHHTTBTTCCHHHHHHHHHH--CSSHHHHHHHHHHCSSHHHHTTTTTTCEETTTTEECHHHHHHHHHHH
T ss_pred HHHHhccCCCHHHHHHHHHH--CCCHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCcCHHHHHHHHHH
Confidence 67999999999999888754 34454442 23221 1122333565663 4 999999999975
No 247
>3pkr_A FLIG, flagellar motor switch protein; FLIF, FLIM, MOTA, motor prote; 2.60A {Helicobacter pylori} PDB: 3usw_A 3pl4_A 3usy_A
Probab=29.73 E-value=87 Score=30.80 Aligned_cols=87 Identities=10% Similarity=0.175 Sum_probs=60.3
Q ss_pred HHHHHHHHhcCCccccc--hhhhcCCCCCCHHHHHHHHHHHHh------------CCcchhHHHHhhchhHHH-HHHhhc
Q 009303 236 YYKAIPVIEKLPFKIES--ADQVKGLPGIGKSMQDHIQEIVTT------------GKLSKLEHFEKDEKVRTI-SLFGEV 300 (538)
Q Consensus 236 Y~rAa~~l~~l~~~i~~--~~~l~~lpgIG~~ia~kI~Eil~t------------G~~~~le~l~~~~~~~~l-~lf~~I 300 (538)
-.+||.+|..||..+.. +..+..+.++-+.+.+.|.+.|+. |-...+-++.|......- .+|..+
T Consensus 87 ~~~AA~VL~~Lp~~~r~dV~~Ria~l~~v~p~~l~~le~~L~~~l~~~~~~~~~~gG~~~vA~ILN~~d~~~e~~iL~~L 166 (279)
T 3pkr_A 87 APNAAETLSYFPDEMKAEISIRMANLGEISPQVVKRVSTVLENKLESLTSYKIEVGGLRAVAEIFNRLGQKSAKTTLARI 166 (279)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHTCC---CCCCSHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHhccccccccCcHHHHHHHHHcCChHHHHHHHHHH
Confidence 36899999999987665 356788888899999999988864 223445555555544433 366666
Q ss_pred cCCCHHHHHHHHHhCCCCHHHHh
Q 009303 301 WGIGPATAQKLYEKGHRTLDDLK 323 (538)
Q Consensus 301 ~GvGpktA~~ly~~GirtledL~ 323 (538)
--.-|..|.++ +.-+=+++||.
T Consensus 167 ~~~dpelAe~I-r~~MF~FeDl~ 188 (279)
T 3pkr_A 167 ESVDNKLAGAI-KEMMFTFEDIV 188 (279)
T ss_dssp HTTCHHHHHHH-HTTSCCGGGGG
T ss_pred HhhCHHHHHHH-HHhccCHHHHh
Confidence 67777777777 33555666665
No 248
>1ci4_A Protein (barrier-TO-autointegration factor (BAF) ); DNA binding protein, retroviral integration, preintegration complex; 1.90A {Homo sapiens} SCOP: a.60.5.1 PDB: 1qck_A 2bzf_A 2ezx_A 2ezy_A 2ezz_A 2odg_A
Probab=28.58 E-value=1.3e+02 Score=24.43 Aligned_cols=57 Identities=16% Similarity=0.246 Sum_probs=34.4
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHhCCcchhHHH-----HhhchhHHHHHHhhccCCCHHHHHHHHH
Q 009303 254 DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHF-----EKDEKVRTISLFGEVWGIGPATAQKLYE 313 (538)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l-----~~~~~~~~l~lf~~I~GvGpktA~~ly~ 313 (538)
.++..+||||+.++.+..| .|--.-+.-| .......-.+-|..+-|+-.|-|..-|+
T Consensus 18 K~V~evpGIG~~~~~~L~~---~Gf~kAy~lLGqFL~l~kd~~~F~~WLk~~~gan~kq~~dc~~ 79 (89)
T 1ci4_A 18 KPVGSLAGIGEVLGKKLEE---RGFDKAYVVLGQFLVLKKDEDLFREWLKDTCGANAKQSRDCFG 79 (89)
T ss_dssp CCGGGSTTCCHHHHHHHHH---TTCCSHHHHHHHHHHTTTCHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred CCcccCCCcCHHHHHHHHH---cCccHHHHHHHHHHHcCCCHHHHHHHHHHHhCcCHHHHHHHHH
Confidence 3689999999999998887 4433322111 1111222334455566888887776664
No 249
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=28.31 E-value=12 Score=40.61 Aligned_cols=46 Identities=24% Similarity=0.344 Sum_probs=9.0
Q ss_pred hccCCCHHHHHHHHHh-CCCCHHHHhhcc-Ccchhhhccccchhhhcc
Q 009303 299 EVWGIGPATAQKLYEK-GHRTLDDLKNED-SLTHSQRLGLKYFDDIKT 344 (538)
Q Consensus 299 ~I~GvGpktA~~ly~~-GirtledL~~~~-~L~~~q~~Glk~~ed~~~ 344 (538)
+=+||+++.|.++|+. |-.+++-|+++. +|....++|++..+.|..
T Consensus 15 ~~~g~~~~~a~~i~~~yg~~~~~~i~~nPy~l~~i~gigf~~aD~ia~ 62 (574)
T 3e1s_A 15 QGLGLTINQAQRAVKHFGADALDRLEKDLFTLTEVEGIGFLTADKLWQ 62 (574)
T ss_dssp -----------------------------CGGGTSSSCCHHHHHTTC-
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHhCCcccCCcCCCCHHHHHHHHH
Confidence 5566666666666665 666665555432 454445555555555543
No 250
>1t94_A Polymerase (DNA directed) kappa; replication, DNA repair, Y-family DNA polymerase, translesion DNA synthesis, lesion bypass; 2.40A {Homo sapiens} SCOP: d.240.1.1 e.8.1.7 PDB: 2oh2_A* 2w7o_A* 2w7p_A* 3hed_A* 3in5_A*
Probab=28.22 E-value=66 Score=33.72 Aligned_cols=52 Identities=15% Similarity=0.330 Sum_probs=34.3
Q ss_pred hcCCCCCCHHHHHHHHHHHHhCCcchhHHHHhhchhHHHHHHhhccCCCHHHHHHHHHh--CCCC
Q 009303 256 VKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK--GHRT 318 (538)
Q Consensus 256 l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~~--Girt 318 (538)
+..|||||+.+++++..+ | +..+.+|.+. +....+.| |++++..||+. |+..
T Consensus 284 v~~l~GiG~~~~~~L~~l---G-I~T~gdL~~~-~~~L~~~f------G~~~~~~l~~~a~G~d~ 337 (459)
T 1t94_A 284 IRKVSGIGKVTEKMLKAL---G-IITCTELYQQ-RALLSLLF------SETSWHYFLHISLGLGS 337 (459)
T ss_dssp GGGCTTSCHHHHHHHHHT---T-CCBHHHHHHT-HHHHHHHS------CHHHHHHHHHHHTTCCC
T ss_pred HHhcCCcCHHHHHHHHHc---C-CCcHHHHHhh-HHHHHHHh------ChHhHHHHHHHHcCCCC
Confidence 678999999988877543 3 4556666553 33233333 67788888874 8854
No 251
>3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular model mRNA splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A
Probab=27.88 E-value=3.9e+02 Score=26.19 Aligned_cols=52 Identities=4% Similarity=0.126 Sum_probs=32.0
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHhCCcchhHHHHhhchhHHHHHHhhccCCCHHHHHHHHH
Q 009303 254 DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYE 313 (538)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~ 313 (538)
..|.+|||||..+++++. +. .+..++++..-.+...-++ -|+++..++.+++
T Consensus 157 ~pL~Qlp~i~~~~~~~l~---~~-~i~s~~~l~~~~~~e~~~l----l~~~~~~~~~v~~ 208 (328)
T 3im1_A 157 NPLRQIPHFNNKILEKCK---EI-NVETVYDIMALEDEERDEI----LTLTDSQLAQVAA 208 (328)
T ss_dssp CGGGGSTTCCHHHHHHHH---HT-TCCSHHHHHHSCHHHHHHH----CCCCHHHHHHHHH
T ss_pred CceeCCCCCCHHHHHHHH---hC-CCCCHHHHhcCCHHHHHhH----hCCCHHHHHHHHH
Confidence 358899999999888865 33 3455666654333333333 2677766666544
No 252
>3fhf_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase; 2.00A {Methanocaldococcus jannaschii} PDB: 3knt_A*
Probab=27.16 E-value=34 Score=32.37 Aligned_cols=21 Identities=19% Similarity=0.298 Sum_probs=17.9
Q ss_pred hhhhc-CCCCCCHHHHHHHHHH
Q 009303 253 ADQVK-GLPGIGKSMQDHIQEI 273 (538)
Q Consensus 253 ~~~l~-~lpgIG~~ia~kI~Ei 273 (538)
.++|. +|||||..+|+.|--+
T Consensus 123 re~Ll~~LpGVG~KTA~~vL~~ 144 (214)
T 3fhf_A 123 REFLVRNIKGIGYKEASHFLRN 144 (214)
T ss_dssp HHHHHHHSTTCCHHHHHHHHHH
T ss_pred HHHHHHhCCCCCHHHHHHHHHH
Confidence 46788 9999999999998654
No 253
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=26.89 E-value=13 Score=36.92 Aligned_cols=47 Identities=23% Similarity=0.317 Sum_probs=0.0
Q ss_pred HhhccCCCHHHHHHHHHhCCCCHHHHhhcc--Ccchhhhccccchhhhc
Q 009303 297 FGEVWGIGPATAQKLYEKGHRTLDDLKNED--SLTHSQRLGLKYFDDIK 343 (538)
Q Consensus 297 f~~I~GvGpktA~~ly~~GirtledL~~~~--~L~~~q~~Glk~~ed~~ 343 (538)
+..++||++.++++|-+.||.|++++.... .|....++.....+++.
T Consensus 14 ~~~l~g~~~~~~~~l~~~g~~t~~~~~~~~~~~l~~~~g~s~~~~~~~~ 62 (324)
T 2z43_A 14 INDLPGISQTVINKLIEAGYSSLETLAVASPQDLSVAAGIPLSTAQKII 62 (324)
T ss_dssp -------------------------------------------------
T ss_pred HHHcCCCCHHHHHHHHHcCCCcHHHHHcCCHHHHHHhhCCCHHHHHHHH
Confidence 446779999999999999999999998543 45555555544444443
No 254
>2kz3_A Putative uncharacterized protein RAD51L3; RAD51D, homologous recombination, unknown function; NMR {Homo sapiens}
Probab=26.50 E-value=93 Score=24.84 Aligned_cols=52 Identities=23% Similarity=0.240 Sum_probs=36.7
Q ss_pred ccCCCHHHHHHHHHhCCCCHHHHhhccCcchhhhccccchhhhccCcCHHHHHHHHHHHHHH
Q 009303 300 VWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKA 361 (538)
Q Consensus 300 I~GvGpktA~~ly~~GirtledL~~~~~L~~~q~~Glk~~ed~~~~i~r~Ea~~i~~iv~~~ 361 (538)
+||+-+..++.|-+.||+|.+|+...+.+.-++..|+- +.++.++...+.+.
T Consensus 9 ~p~Lse~~~~~L~~~~I~Tv~Dfl~~d~~eL~~~~~ls----------~~~v~~l~r~l~~~ 60 (83)
T 2kz3_A 9 CPGLTEEMIQLLRSHRIKTVVDLVSADLEEVAQKCGLS----------YKALVALRRVLLAQ 60 (83)
T ss_dssp STTCCHHHHHHHHHTTCCCHHHHTTSCHHHHHHHHTCC----------HHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHCCCCCHHHHHhCCHHHHHHHhCCC----------HHHHHHHHHHHHHH
Confidence 48999999999999999999999876644444444443 55666665555443
No 255
>2kp7_A Crossover junction endonuclease MUS81; helix-hairpin-helix, tumour suppressor, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; NMR {Mus musculus}
Probab=25.61 E-value=39 Score=27.26 Aligned_cols=21 Identities=14% Similarity=-0.056 Sum_probs=16.8
Q ss_pred HHHHHhhccCCCHHHHHHHHH
Q 009303 293 TISLFGEVWGIGPATAQKLYE 313 (538)
Q Consensus 293 ~l~lf~~I~GvGpktA~~ly~ 313 (538)
.-.....++|||++++++|-+
T Consensus 56 s~~e~~~L~giG~ki~~~L~e 76 (87)
T 2kp7_A 56 SGKEAKILQHFGDRLCRMLDE 76 (87)
T ss_dssp SHHHHHTCTTTCHHHHHHHHH
T ss_pred CHHHHHHhhcccHHHHHHHHH
Confidence 344556999999999999865
No 256
>3n0u_A Probable N-glycosylase/DNA lyase; structural genomics, ISFI, DNA repair, 8-oxoguanine, base EX repair, PSI-2, protein structure initiative; 1.50A {Thermotoga maritima}
Probab=25.43 E-value=24 Score=33.50 Aligned_cols=21 Identities=19% Similarity=0.213 Sum_probs=17.7
Q ss_pred hhhhc-CCCCCCHHHHHHHHHH
Q 009303 253 ADQVK-GLPGIGKSMQDHIQEI 273 (538)
Q Consensus 253 ~~~l~-~lpgIG~~ia~kI~Ei 273 (538)
.++|. +|||||..+|+.|--+
T Consensus 128 r~~L~~~l~GVG~kTA~~vL~~ 149 (219)
T 3n0u_A 128 REFLVRNAKGIGWKEASHFLRN 149 (219)
T ss_dssp HHHHHHHSTTCCHHHHHHHHHT
T ss_pred HHHHHHhCCCCCHHHHHHHHHH
Confidence 46788 9999999999988644
No 257
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=24.81 E-value=14 Score=40.08 Aligned_cols=50 Identities=28% Similarity=0.363 Sum_probs=15.7
Q ss_pred CCCHHHHHHHHHHHHhCCcchhHHHHhhchhHHHHHHhhccCCCHHHHHHHHHh-CCCC
Q 009303 261 GIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRT 318 (538)
Q Consensus 261 gIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~~-Girt 318 (538)
||+.+++.+|........ ++.+++ .||+. ..|+|||.++|..+-.. |+..
T Consensus 18 g~~~~~a~~i~~~yg~~~---~~~i~~-nPy~l----~~i~gigf~~aD~ia~~~g~~~ 68 (574)
T 3e1s_A 18 GLTINQAQRAVKHFGADA---LDRLEK-DLFTL----TEVEGIGFLTADKLWQARGGAL 68 (574)
T ss_dssp ------------------------------CGG----GTSSSCCHHHHHTTC-------
T ss_pred CCCHHHHHHHHHHHHHHH---HHHHHh-CCccc----CCcCCCCHHHHHHHHHHcCCCC
Confidence 889999999988775533 344443 46754 48999999999999877 8853
No 258
>2i5u_A DNAD domain protein; structural genomics, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG, U function; HET: MSE; 1.50A {Enterococcus faecalis} SCOP: a.275.1.1
Probab=24.64 E-value=33 Score=27.15 Aligned_cols=18 Identities=11% Similarity=0.381 Sum_probs=11.4
Q ss_pred HHHHHHHHhCCCCHHHHh
Q 009303 306 ATAQKLYEKGHRTLDDLK 323 (538)
Q Consensus 306 ktA~~ly~~GirtledL~ 323 (538)
+..+.|+++|++|++|++
T Consensus 65 ~IL~~W~~~gi~T~e~v~ 82 (83)
T 2i5u_A 65 AILKDWEQRGFKSVEERE 82 (83)
T ss_dssp HHHHHHHHHTCCC-----
T ss_pred HHHHHHHHcCCCCHHHHh
Confidence 567889999999999985
No 259
>3bbn_M Ribosomal protein S13; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=24.20 E-value=7.6 Score=34.63 Aligned_cols=21 Identities=14% Similarity=0.328 Sum_probs=18.8
Q ss_pred HHhhccCCCHHHHHHHHHh-CC
Q 009303 296 LFGEVWGIGPATAQKLYEK-GH 316 (538)
Q Consensus 296 lf~~I~GvGpktA~~ly~~-Gi 316 (538)
-|+.|+|||+.+|..+.+. ||
T Consensus 63 aLt~IyGIG~~~A~~I~~~~gI 84 (145)
T 3bbn_M 63 SLQYIHGIGRSRSRQILLDLNF 84 (145)
T ss_dssp GGGGSTTCCSSTTTGGGTTTTC
T ss_pred eeeeecCccHHHHHHHHHHcCC
Confidence 4689999999999999887 88
No 260
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=24.02 E-value=3.5e+02 Score=29.40 Aligned_cols=49 Identities=14% Similarity=0.301 Sum_probs=35.8
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHhCCcchhHHHHhhchhHHHHHHhhccCCCHHHHHHHHH
Q 009303 254 DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYE 313 (538)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~ 313 (538)
-.|.+|||||...|.++. +.| +..++++. -.+....+++ |++.++++++
T Consensus 657 ~~L~qlp~i~~~rar~L~---~~g-~~s~~~l~-~~~~~l~~~l------~~~~~~~i~~ 705 (715)
T 2va8_A 657 LELVQISGVGRKRARLLY---NNG-IKELGDVV-MNPDKVKNLL------GQKLGEKVVQ 705 (715)
T ss_dssp HHHHTSTTCCHHHHHHHH---HTT-CCSHHHHH-HCHHHHHHHH------CHHHHHHHHH
T ss_pred cchhhCCCCCHHHHHHHH---HcC-CCCHHHHh-CCHHHHHHHh------ChhHHHHHHH
Confidence 468899999999999864 555 47788887 5566666666 3666666665
No 261
>4ecq_A DNA polymerase ETA; transferase-DNA complex; HET: DNA DTP; 1.50A {Homo sapiens} PDB: 3mr2_A* 3mr4_A* 3mr5_A* 3si8_A* 4dl2_A* 4dl3_A* 4dl4_A* 4dl5_A* 4dl6_A* 4dl7_A* 3mr3_A* 4ecr_A* 4ecs_A* 4ect_A* 4ecu_A* 4ecv_A* 4ecw_A* 4ecx_A* 4ecy_A* 4ecz_A* ...
Probab=21.98 E-value=1.1e+02 Score=31.87 Aligned_cols=54 Identities=19% Similarity=0.372 Sum_probs=33.6
Q ss_pred hcCCCCCCHHHHHHHHHHHHhCCcchhHHHHhhchhHHHHHHhhccCCCHHHHHHHHHh--CCCC
Q 009303 256 VKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK--GHRT 318 (538)
Q Consensus 256 l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~~--Girt 318 (538)
+..|+|||.++..++-+-+ | +..+.+|.+-.+..+.+.| |++++..||+. |+..
T Consensus 255 v~~l~GiG~~~~~~lL~~l--G-I~TigdLa~~~~~~L~~~f------G~~~g~~L~~~a~G~d~ 310 (435)
T 4ecq_A 255 IRKIRSLGGKLGASVIEIL--G-IEYMGELTQFTESQLQSHF------GEKNGSWLYAMCRGIEH 310 (435)
T ss_dssp GGGSTTCSSHHHHHHHHHH--T-CCBGGGGGGSCHHHHHHHH------CHHHHHHHHHHTTTCCC
T ss_pred HHHhcCCCHHHHHHHHHHc--C-CCcHHHHhhCCHHHHHHHh------CccHHHHHHHHhhCCCC
Confidence 6788999998876643222 2 3444455443333344445 58899999874 8763
No 262
>2zix_A Crossover junction endonuclease MUS81; helix-hairpin-helix, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium, metal-binding, nucleus; 3.50A {Homo sapiens}
Probab=20.67 E-value=14 Score=36.68 Aligned_cols=59 Identities=15% Similarity=0.295 Sum_probs=35.9
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHhCCcchh-HHHHhh-chhHHHHHHhhc-cC-----CCHHHHHHHHHh
Q 009303 254 DQVKGLPGIGKSMQDHIQEIVTTGKLSKL-EHFEKD-EKVRTISLFGEV-WG-----IGPATAQKLYEK 314 (538)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~Eil~tG~~~~l-e~l~~~-~~~~~l~lf~~I-~G-----vGpktA~~ly~~ 314 (538)
.+|..|||||...|..|.+... +...| +.++.. .+.....+|.++ .| |||..++++|+.
T Consensus 233 ~~L~~I~GVs~~~A~~I~~~yp--Tp~~L~~Ay~~~~~~~e~~~lL~~l~~g~~~r~IG~~lSrkI~~~ 299 (307)
T 2zix_A 233 RQLMQVRGVSGEKAAALVDRYS--TPASLLAAYDACATPKEQETLLSTIKCGRLQRNLGPALSRTLSQL 299 (307)
T ss_dssp HTTTCSTTCCSTTTTTSSSSSC--SHHHHHHHHHCCSSGGGTTTTTSCCCCTTTTCCCCHHHHHHHHHH
T ss_pred HHHHhccCCCHHHHHHHHHHcC--CHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCccCHHHHHHHHHH
Confidence 6799999999988888776332 23322 222220 111122244445 23 999999999985
No 263
>3k7d_A Glutamate-ammonia-ligase adenylyltransferase; nucleotidyl transferase domain, ATP-binding, nucleotide-BIND nucleotidyltransferase; 2.40A {Escherichia coli}
Probab=20.02 E-value=1.4e+02 Score=31.83 Aligned_cols=45 Identities=13% Similarity=0.247 Sum_probs=29.5
Q ss_pred CeEEEecccccccCC-cCCCeeEEEecCCcc----------hhhhhHHHHHHHHHH
Q 009303 368 EVIILCGGSYRRGKA-SCGDLDVVIMHPDRK----------SHKGFLSKYVKKLKE 412 (538)
Q Consensus 368 ~~~v~~~Gs~RRgke-~~~DVDiLit~~~~~----------~~~~~l~~vv~~L~~ 412 (538)
++.|..+|+|=|+.- .+.|||+++.+++.. ....++.++.+++..
T Consensus 234 ~~aviamGklGg~EL~~~SDiDlifv~~~~~~~~t~g~~~~~~~~~f~rlaq~li~ 289 (498)
T 3k7d_A 234 GFAVVGYGKLGGWELGYSSDLDLIFLHDCPMDAMTDGEREIDGRQFYLRLAQRIMH 289 (498)
T ss_dssp SEEEEEEHHHHTTCCCTTCCEEEEEEECCCTTCBBSSSSCCBHHHHHHHHHHHHHH
T ss_pred CEEEEeeccccccccCcccccceeeeecCcccccccccccchHHHHHHHHHHHHHH
Confidence 356778899977654 589999999776431 123456666555544
Done!