Query 009304
Match_columns 538
No_of_seqs 304 out of 2096
Neff 7.6
Searched_HMMs 46136
Date Thu Mar 28 22:55:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009304.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009304hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01677 pln_FAD_oxido plant- 100.0 6E-115 1E-119 941.1 50.6 530 1-530 23-557 (557)
2 KOG4730 D-arabinono-1, 4-lacto 100.0 1.8E-98 4E-103 756.9 34.1 471 1-487 41-517 (518)
3 PLN00107 FAD-dependent oxidore 100.0 4.3E-87 9.3E-92 642.5 22.3 245 289-533 6-256 (257)
4 TIGR01678 FAD_lactone_ox sugar 100.0 1.2E-77 2.6E-82 638.1 40.3 425 1-476 6-438 (438)
5 TIGR01676 GLDHase galactonolac 100.0 2.3E-76 5E-81 631.7 40.0 442 1-482 53-540 (541)
6 TIGR01679 bact_FAD_ox FAD-link 100.0 7.3E-75 1.6E-79 616.1 39.3 413 1-483 3-419 (419)
7 PLN02465 L-galactono-1,4-lacto 100.0 7.5E-74 1.6E-78 617.0 40.0 444 1-484 88-572 (573)
8 PLN02441 cytokinin dehydrogena 100.0 3.4E-41 7.3E-46 361.6 35.5 423 1-484 56-520 (525)
9 PF04030 ALO: D-arabinono-1,4- 100.0 1.2E-41 2.5E-46 340.7 11.8 257 179-481 1-259 (259)
10 COG0277 GlcD FAD/FMN-containin 100.0 6.9E-38 1.5E-42 338.1 25.6 409 6-480 28-457 (459)
11 PLN02805 D-lactate dehydrogena 100.0 1E-34 2.2E-39 316.0 29.2 192 8-209 132-332 (555)
12 PRK11230 glycolate oxidase sub 100.0 1.6E-32 3.5E-37 297.1 29.1 196 5-209 51-255 (499)
13 TIGR00387 glcD glycolate oxida 100.0 1.9E-31 4.1E-36 283.8 30.0 189 13-210 1-199 (413)
14 PRK11282 glcE glycolate oxidas 100.0 6E-29 1.3E-33 256.5 18.5 181 18-210 3-194 (352)
15 KOG1231 Proteins containing th 100.0 2.9E-27 6.3E-32 240.3 24.0 176 5-189 59-241 (505)
16 PF01565 FAD_binding_4: FAD bi 99.9 2.3E-25 5.1E-30 201.7 13.2 138 10-157 1-139 (139)
17 KOG1233 Alkyl-dihydroxyacetone 99.9 1.5E-24 3.3E-29 215.7 20.1 205 2-209 153-364 (613)
18 PRK11183 D-lactate dehydrogena 99.9 1.7E-23 3.7E-28 221.7 17.7 198 7-209 36-289 (564)
19 KOG1232 Proteins containing th 99.9 2.7E-23 5.8E-28 206.7 10.1 191 2-196 82-276 (511)
20 PRK13905 murB UDP-N-acetylenol 99.9 3.8E-21 8.2E-26 195.9 15.8 164 5-187 26-193 (298)
21 PRK14652 UDP-N-acetylenolpyruv 99.8 1.7E-17 3.8E-22 168.7 16.7 164 5-187 31-196 (302)
22 KOG1262 FAD-binding protein DI 99.7 3.6E-17 7.8E-22 163.7 17.2 390 58-479 104-523 (543)
23 TIGR00179 murB UDP-N-acetyleno 99.7 3.3E-17 7.2E-22 165.5 15.8 167 5-188 8-177 (284)
24 PRK13906 murB UDP-N-acetylenol 99.7 3.5E-17 7.6E-22 166.8 15.7 164 5-186 32-197 (307)
25 PRK12436 UDP-N-acetylenolpyruv 99.7 1.9E-16 4E-21 161.5 15.3 163 5-186 32-197 (305)
26 PRK13903 murB UDP-N-acetylenol 99.7 3E-16 6.6E-21 162.5 16.3 165 5-187 28-197 (363)
27 PRK14649 UDP-N-acetylenolpyruv 99.6 2E-15 4.3E-20 153.2 15.5 166 5-187 16-193 (295)
28 PRK14653 UDP-N-acetylenolpyruv 99.6 3.6E-15 7.8E-20 150.9 15.5 162 5-187 29-194 (297)
29 PF09129 Chol_subst-bind: Chol 99.6 3.1E-14 6.7E-19 137.5 13.9 245 205-483 26-321 (321)
30 PRK14650 UDP-N-acetylenolpyruv 99.5 1.4E-13 3.1E-18 139.0 14.8 165 5-187 28-195 (302)
31 PRK00046 murB UDP-N-acetylenol 99.5 1.5E-13 3.3E-18 140.8 14.6 165 5-187 16-189 (334)
32 COG0812 MurB UDP-N-acetylmuram 99.5 2.3E-13 5E-18 135.4 14.9 165 5-186 16-183 (291)
33 PRK14648 UDP-N-acetylenolpyruv 99.4 1.4E-12 3E-17 133.6 14.9 128 5-142 25-156 (354)
34 PRK14651 UDP-N-acetylenolpyruv 99.3 5.4E-11 1.2E-15 118.7 13.4 152 6-186 17-170 (273)
35 PRK13904 murB UDP-N-acetylenol 98.9 1E-08 2.2E-13 101.5 11.4 146 5-187 14-160 (257)
36 PF00941 FAD_binding_5: FAD bi 97.4 0.00027 5.8E-09 66.4 6.1 129 10-146 2-140 (171)
37 PRK09799 putative oxidoreducta 96.9 0.0027 5.9E-08 63.6 8.0 102 12-119 4-111 (258)
38 TIGR03312 Se_sel_red_FAD proba 96.6 0.007 1.5E-07 60.6 8.1 101 12-119 3-110 (257)
39 PF09265 Cytokin-bind: Cytokin 96.5 0.0047 1E-07 62.1 5.9 130 329-475 133-276 (281)
40 TIGR02963 xanthine_xdhA xanthi 96.0 0.03 6.6E-07 60.9 9.4 105 10-119 192-304 (467)
41 PF02913 FAD-oxidase_C: FAD li 95.6 0.016 3.5E-07 56.7 4.8 115 340-475 126-245 (248)
42 PF08031 BBE: Berberine and be 95.4 0.0088 1.9E-07 43.5 1.9 29 449-477 14-44 (47)
43 TIGR03195 4hydrxCoA_B 4-hydrox 95.3 0.026 5.7E-07 58.2 5.6 105 10-119 4-118 (321)
44 PRK09971 xanthine dehydrogenas 95.2 0.023 5.1E-07 57.9 4.8 103 12-119 6-119 (291)
45 TIGR03199 pucC xanthine dehydr 94.9 0.028 6.1E-07 56.5 4.4 98 16-118 1-109 (264)
46 PLN02906 xanthine dehydrogenas 93.7 0.33 7.2E-06 59.4 10.5 104 11-119 229-351 (1319)
47 TIGR02969 mam_aldehyde_ox alde 93.0 0.36 7.8E-06 59.1 9.5 108 11-123 237-363 (1330)
48 PLN00192 aldehyde oxidase 93.0 0.27 5.8E-06 60.3 8.3 108 10-119 233-353 (1344)
49 COG4630 XdhA Xanthine dehydrog 92.9 0.27 5.8E-06 50.8 6.7 125 10-146 203-337 (493)
50 COG1319 CoxM Aerobic-type carb 92.5 1.1 2.5E-05 45.3 10.7 156 10-184 3-173 (284)
51 KOG0430 Xanthine dehydrogenase 57.4 22 0.00047 42.4 6.3 103 12-121 216-334 (1257)
52 PF03392 OS-D: Insect pheromon 52.5 7.5 0.00016 32.7 1.2 25 450-476 70-94 (95)
53 PF03614 Flag1_repress: Repres 42.7 37 0.0008 30.8 4.1 37 12-48 8-44 (165)
54 PF07317 YcgR: Flagellar regul 40.1 36 0.00079 29.1 3.6 67 16-100 4-70 (108)
55 PF14625 Lustrin_cystein: Lust 39.9 21 0.00045 25.2 1.8 22 503-526 19-40 (45)
56 PF11478 Tachystatin_B: Antimi 34.8 26 0.00057 23.5 1.4 28 495-524 4-35 (42)
57 PRK04322 peptidyl-tRNA hydrola 33.8 1.1E+02 0.0023 26.7 5.5 39 7-45 45-83 (113)
58 PRK11282 glcE glycolate oxidas 30.9 38 0.00082 35.6 2.7 52 423-476 293-346 (352)
59 PF00396 Granulin: Granulin; 30.0 33 0.00071 24.4 1.4 16 503-519 21-36 (43)
60 TIGR03752 conj_TIGR03752 integ 29.7 45 0.00098 36.1 3.0 41 110-158 287-327 (472)
61 PRK02947 hypothetical protein; 29.6 1.5E+02 0.0033 29.3 6.6 87 16-105 116-221 (246)
62 PF01981 PTH2: Peptidyl-tRNA h 29.2 1.5E+02 0.0032 25.6 5.8 38 8-45 49-86 (116)
63 COG5470 Uncharacterized conser 29.0 84 0.0018 26.4 3.8 50 416-466 16-84 (96)
64 TIGR00283 arch_pth2 peptidyl-t 26.7 1.9E+02 0.0041 25.2 5.9 39 7-45 47-85 (115)
65 cd02407 PTH2_family Peptidyl-t 26.1 1.8E+02 0.004 25.2 5.7 39 7-45 47-85 (115)
66 PF04706 Dickkopf_N: Dickkopf 23.0 70 0.0015 23.8 2.1 26 503-530 2-27 (52)
67 cd02430 PTH2 Peptidyl-tRNA hyd 22.9 2.6E+02 0.0056 24.4 6.0 37 9-45 49-85 (115)
68 KOG3282 Uncharacterized conser 22.2 2.2E+02 0.0049 26.9 5.7 39 7-45 122-160 (190)
69 COG1154 Dxs Deoxyxylulose-5-ph 21.6 5.5E+02 0.012 29.0 9.5 80 8-93 439-520 (627)
70 COG0351 ThiD Hydroxymethylpyri 20.8 2.4E+02 0.0052 28.4 6.0 80 15-104 151-232 (263)
71 COG4981 Enoyl reductase domain 20.2 1.4E+02 0.003 33.1 4.4 96 8-115 150-256 (717)
No 1
>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase. This model represents an uncharacterized plant-specific family of FAD-dependent oxidoreductases. At least seven distinct members are found in Arabidopsis thaliana. The family shows considerable sequence similarity to three different enzymes of ascorbic acid biosynthesis: L-galactono-1,4-lactone dehydrogenase (EC 1.3.2.3) from higher plants, D-arabinono-1,4-lactone oxidase (EC 1.1.3.37 from Saccharomyces cerevisiae, and L-gulonolactone oxidase (EC 1.1.3.8) from mouse, as well as to a bacterial sorbitol oxidase. The class of compound acted on by members of this family is unknown.
Probab=100.00 E-value=6.2e-115 Score=941.08 Aligned_cols=530 Identities=65% Similarity=1.176 Sum_probs=477.0
Q ss_pred CCCCCCCCCcCEEEeCCCHHHHHHHHHHHHHcCCceEEEeCCCCCCCCCCccCCC-CcEEEEcCCCCCeeEEeCCCCEEE
Q 009304 1 MFPDRSACKAADVAYPTSEQEIISVVSAATIAKRKMKVATRFSHSIPKLVCPDGQ-DGLLISTKYLNKIINIDTEAMTIT 79 (538)
Q Consensus 1 ~W~~~~~~~p~~v~~P~s~~el~~~v~~a~~~~~~v~v~~ggghS~~~~~~~~~~-~gv~Idl~~ln~v~~vd~~~~~vt 79 (538)
||++++.+.|..|++|+|++||+++|+.|++++++|++++|+|||+++++++++. +|++|||++||+|+++|.++++||
T Consensus 23 nWag~~~~~p~~vv~P~s~eeV~~iV~~A~~~g~~v~v~GG~gHs~~~~a~t~~~~ggvvIdL~~Ln~il~iD~~~~tVt 102 (557)
T TIGR01677 23 AFPDRSTCRAANVAYPKTEAELVSVVAAATAAGRKMKVVTRYSHSIPKLACPDGSDGALLISTKRLNHVVAVDATAMTVT 102 (557)
T ss_pred hcCCcccCCCCEEEecCCHHHHHHHHHHHHHCCCeEEEEeCCCCCcCcccccCCCCCEEEEEcccCCCCEEEeCCCCEEE
Confidence 8999999999999999999999999999999999999997789999998887533 469999999999999999999999
Q ss_pred EeCCCCHHHHHHHHHHCCCcccccccccccchhhhhccCCcCCCccCCCCchhcceeEEEEEeeCCCCCCcccEEEcCCC
Q 009304 80 MESGVTLRQIIGESAKAGLALPYTPYWWGLTIGGLIGTGAHGSSLWGRGSSIHDYVVELRIVSSGGPDDGYAKVRVLNEN 159 (538)
Q Consensus 80 v~aGv~l~~L~~~l~~~Gl~l~~~~~~~~~tvGG~i~tg~hGs~~~~~~G~~~d~V~~l~vV~~~G~~~g~~~v~~~~~~ 159 (538)
|+||+++.+|.+.|.++|+++++.|++..+||||+|+||+||++..+++|.++|+|++++||+++|+.+|++++++++++
T Consensus 103 V~AG~~l~~L~~~L~~~Glal~~~~~~~~~TVGGaiatGthGs~~~~~~G~l~d~V~~l~vV~a~G~a~G~~~v~~~s~~ 182 (557)
T TIGR01677 103 VESGMSLRELIVEAEKAGLALPYAPYWWGLTVGGMMGTGAHGSSLWGKGSAVHDYVVGIRLVVPASAAEGFAKVRILSEG 182 (557)
T ss_pred ECCCCcHHHHHHHHHHcCCEeccCCCCCCeEeeEhhhCCCCCccccccccchhheEEEEEEEeCCCcccCcceEEEeCCC
Confidence 99999999999999999999999999889999999999999999866689999999999999999977777779888874
Q ss_pred -cc-chhhhhcCCCCeEEEEEEEEEeEecCceeEEEEecCchhHHHHHhhhccccceeEEEEeeCCCcEEEEecCCCCCC
Q 009304 160 -DQ-DLDAAKVSLGVLGVISQVTLKLQPLFKRSITFLMKNDSELGDEAGSFGHQHEFADIVWYPSQHKALYRIDDRISSN 237 (538)
Q Consensus 160 -~~-~f~a~~~s~G~lGVIt~vtl~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~P~~~~~~~~~~~r~~~~ 237 (538)
++ +|+|+++|+|+|||||++|||++|.+++..++...+++++.+.++++.++++|.+++|+|++++++++..+|++..
T Consensus 183 ~~~dLf~a~rgslG~lGVVtevTL~~~P~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~f~w~P~~~~~~~~~~~r~~~~ 262 (557)
T TIGR01677 183 DTPNEFNAAKVSLGVLGVISQVTLALQPMFKRSVTYTMRDDSDFEDQFVTFGKKHEFADITWYPSQGKAVYRRDDRVPVN 262 (557)
T ss_pred CCHHHHHhhccCCCccEeeeEEEEEEEccccceEEEEcCCHHHHHHHHHHhhcCCeEEEEEEECCCCeEEEEecCcCCCC
Confidence 44 5999999999999999999999999998788888888888888999999999999999999999999999998876
Q ss_pred CCCCccccccccccchhhhhhhhccchhhhhhcccccccccccchhhhhhhhhccccc-cCCccccCccccccccccccc
Q 009304 238 ATGNAVYNYIPFRSTLSATLATIRTTEENQESRSDANGKCIGAKLVTSTLVTSAFGLT-NNGIAFTGYPVIGHHNRLQSS 316 (538)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~t~~pvvg~~~~~~~~ 316 (538)
.++++++++++++..++.+....+..++.++...+..++|..+...+.......+++. +++..++++|++|++++|+++
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~v~~~ 342 (557)
T TIGR01677 263 ASGNGVNDFLGFRSTLIAAIAGIRALEETFERSRNANGKCVTATITSAALFLPGYGLTNSGGIIFTGYPVVGSQGRMQTS 342 (557)
T ss_pred CCcchhhhhccccccchhhhhhhhhhhHHHhhhcccccceeccccccchhhhhcccccccccccccCCceecchHhhccc
Confidence 5666777777776554444444454555555555556677766555544444445544 355667788999999999999
Q ss_pred ccccCCCCcccccccccCCCCCC-ccEEEEEEEEeccchHHHHHHHHHHHHhCcccccCceeecceEEEEecCCCCCCCC
Q 009304 317 GTCLDSPQDSLITACAWDPRIKG-EFFHQTTFSIRLSVVKSFIDDIQKLIKLEPKALCGLELYNGILMRYVKASSAYLGK 395 (538)
Q Consensus 317 ~~~~~~~~~~~~~~~~w~~r~~~-~~~~~~E~~vP~~~~~~~i~dv~~l~~~~~~~~~~~~~~~pi~iRfv~~s~a~Ls~ 395 (538)
+.|.+.++.++...|.|+++.++ .+|+||||+||++++.++|++|+++++.++..+|.++++||||+||+++|++||||
T Consensus 343 ~~c~~~~~~~~~~~~~~~~~~~~~~~f~e~EyavP~e~~~~al~~vr~~~~~~~~~~~~~~~~fpievR~v~aDd~wLSp 422 (557)
T TIGR01677 343 GSCLDSPQDGLLTACAWDPRYKGLFFFHQTTLSVPVSRFRDFVLDVKRLRDMEPKSLCGVELYNGILIRYVKASPAYLGK 422 (557)
T ss_pred ccccccccccccccCccccccccccceeEEEEEeeHHHHHHHHHHHHHHHHhcccccCceeeecCeEEEEecCCccccCC
Confidence 99999988888889999999887 88999999999999999999999999998877888899999999999999999999
Q ss_pred CCCeEEEEEeEeccCCCCCccchHHHHHHHHHHHHhhcCCeeccCCCCCcchhhHHHhCCCHHHHHHHHHhcCCCCCCCc
Q 009304 396 QEDSLDFDITYYRSKDPMTPRLYEDILEEIEQLAVFKYGGFPHWGKNRNLVFDGVIKKYKNAGEFFKVKDKYDPLGLFSS 475 (538)
Q Consensus 396 ~~d~~~i~i~~y~~~~~~~p~~~~~~~~eie~~~~~k~gGrPHWgK~~~~~~~~~~~~Yp~~~~F~~~r~~~DP~g~F~n 475 (538)
+||+|+|+|++|++.++++||.|++||+++|+|+|.+|||||||||+|++++++++++||+|++|+++|+++||+|+|+|
T Consensus 423 ~rds~~i~~~~~~~~~~~~~~~~~~~f~~~E~i~l~~yggRPHWGK~h~~~~~~l~~~YP~~~dF~alR~~~DP~g~F~N 502 (557)
T TIGR01677 423 EEDAVDFDFTYYRAKDPLTPRLYEDVIEEIEQMAFFKYGALPHWGKNRNLAFDGVIRKYPNADKFLKVKDSYDPKGLFSS 502 (557)
T ss_pred CCceEEEEEEEecCCCCcccchHHHHHHHHHHHHHhhcCCCCCccccccchHHHHHHhCCCHHHHHHHHHhcCCCCccCC
Confidence 99999999999999999999999999999999867999999999999999999999999999999999999999999999
Q ss_pred hhhHhhhCCCCCccccCCCCCCcceeecCCCCCCCCCCCccccCCcccccccccc
Q 009304 476 EWTDQVLGLKEGVTIYKEGCALEGLCICSQDIHCAPTKGYLCRPGKVYKDARVCT 530 (538)
Q Consensus 476 ~~~~~llg~~~~~~~~~~~c~~~~~c~c~~~~hc~~~~~~~c~~~~~~~~~~~c~ 530 (538)
+|+++|||..|.+.++.+|||+||+|+|++|+||||++|||||||+||+||||||
T Consensus 503 ~yl~~l~~~~~~~~~~~~~c~~~~~c~c~~d~hc~~~~~~~c~~~~~~~e~~~c~ 557 (557)
T TIGR01677 503 EWSDEILGIKGNASIKADGCALEGLCVCSEDAHCAPSKGYLCRPGKVYKEARVCT 557 (557)
T ss_pred HHHHHHhCcCCCccccCCCccccceEecCCCCCCCCCCCccccCCcccCcccccC
Confidence 9999999998877789999999999999999999999999999999999999996
No 2
>KOG4730 consensus D-arabinono-1, 4-lactone oxidase [Defense mechanisms]
Probab=100.00 E-value=1.8e-98 Score=756.90 Aligned_cols=471 Identities=57% Similarity=0.963 Sum_probs=444.8
Q ss_pred CCCCCCCCCcCEEEeCCCHHHHHHHHHHHHHcCCceEEEeCCCCCCCCCCccCCCCcEEEEcCCCCCeeEEeCCCCEEEE
Q 009304 1 MFPDRSACKAADVAYPTSEQEIISVVSAATIAKRKMKVATRFSHSIPKLVCPDGQDGLLISTKYLNKIINIDTEAMTITM 80 (538)
Q Consensus 1 ~W~~~~~~~p~~v~~P~s~~el~~~v~~a~~~~~~v~v~~ggghS~~~~~~~~~~~gv~Idl~~ln~v~~vd~~~~~vtv 80 (538)
.|+++..|+++.|-+|+|++||+++|+.|+++|+|+|++ ++|||+++++|++ |++|+|++||+++++|++.++|||
T Consensus 41 afPdr~~c~aanv~yP~teaeL~~lVa~A~~a~~kirvV-g~gHSp~~l~ctd---g~lisl~~lnkVv~~dpe~~tvTV 116 (518)
T KOG4730|consen 41 AFPDRSTCKAANVNYPKTEAELVELVAAATEAGKKIRVV-GSGHSPSKLVCTD---GLLISLDKLNKVVEFDPELKTVTV 116 (518)
T ss_pred ccCchhhhhhcccCCCCCHHHHHHHHHHHHHcCceEEEe-cccCCCCcceecc---ccEEEhhhhccceeeCchhceEEe
Confidence 488999999999999999999999999999999999999 6999999999997 799999999999999999999999
Q ss_pred eCCCCHHHHHHHHHHCCCcccccccccccchhhhhccCCcCCCccCCCCchhcceeEEEEEeeCCCCCCcccEEEcCCC-
Q 009304 81 ESGVTLRQIIGESAKAGLALPYTPYWWGLTIGGLIGTGAHGSSLWGRGSSIHDYVVELRIVSSGGPDDGYAKVRVLNEN- 159 (538)
Q Consensus 81 ~aGv~l~~L~~~l~~~Gl~l~~~~~~~~~tvGG~i~tg~hGs~~~~~~G~~~d~V~~l~vV~~~G~~~g~~~v~~~~~~- 159 (538)
|||++++||++++++.||+||+.|+|.++||||+|+||+|||+++ +||+|.++.+|.+--..+|+ ++.++++
T Consensus 117 ~aGirlrQLie~~~~~GlsL~~~~si~e~sVgGii~TGaHGSS~~-----vH~~v~~i~~v~~~~~~~G~--v~~Ls~e~ 189 (518)
T KOG4730|consen 117 QAGIRLRQLIEELAKLGLSLPNAPSISEQSVGGIISTGAHGSSLW-----VHDYVSEIISVSPITPADGF--VVVLSEEK 189 (518)
T ss_pred ccCcCHHHHHHHHHhcCccccCCCceecceeeeEEecccCCCccc-----cCcccceeEEEeeeccCCce--EEEecccC
Confidence 999999999999999999999999999999999999999999985 78889888888875445666 8888875
Q ss_pred cc-chhhhhcCCCCeEEEEEEEEEeEecCceeEEEEecCchhHHHHHh-hhccccceeEEEEeeCCCcEEEEecCCCCCC
Q 009304 160 DQ-DLDAAKVSLGVLGVISQVTLKLQPLFKRSITFLMKNDSELGDEAG-SFGHQHEFADIVWYPSQHKALYRIDDRISSN 237 (538)
Q Consensus 160 ~~-~f~a~~~s~G~lGVIt~vtl~l~p~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~w~P~~~~~~~~~~~r~~~~ 237 (538)
+| +|+|+++|+|.||||++|||+++|+|+++.++...++.++.++.. .++.+|||.+++|+|+++++||+.+||++.+
T Consensus 190 dpe~F~AAkvSLG~LGVIs~VTl~~vp~Fk~s~t~~v~n~~dl~~d~~~~~~~~~EF~~~~w~Py~~kvV~~~~nrv~~n 269 (518)
T KOG4730|consen 190 DPELFNAAKVSLGVLGVISQVTLSVVPAFKRSLTYVVTNDSDLFKDWKVTLGESHEFVDVLWYPYTGKVVYRRDNRVPVN 269 (518)
T ss_pred CHHHHhhhhhcccceeEEEEEEEEEEecceeeeEEEEechHHHHHHHHHHhcccccceEEEEeccCCeEEEEecCccccc
Confidence 45 499999999999999999999999999999999999999655554 9999999999999999999999999999988
Q ss_pred CCCCccccccccccchhhhhhhhccchhhhhhcccccccccccchhhhhhhhhccccccCCccccCcccccccccccccc
Q 009304 238 ATGNAVYNYIPFRSTLSATLATIRTTEENQESRSDANGKCIGAKLVTSTLVTSAFGLTNNGIAFTGYPVIGHHNRLQSSG 317 (538)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~t~~pvvg~~~~~~~~~ 317 (538)
+ |++||.+|+|+++..+...|..++..+..++..++|..+....+.++.+.||++|++..||+|||+|.+++|+.+|
T Consensus 270 t---g~~~f~p~~~~~s~~~~~~~s~~e~~~~~r~~~~kc~~a~~~tp~l~~~sf~~~~~~~~~t~~pvig~q~~~~~s~ 346 (518)
T KOG4730|consen 270 T---GLPDFKPFRPQPSAVLAKLRSFEESIELFRDANGKCVSADSVTPYLERFSFGLTNGGKLFTGYPVIGVQGKMMSSG 346 (518)
T ss_pred c---CCccccCCCCcHHHHHHHHHHHHHHHHHhhhccCceecCcccchhHHHhhhheecCcEeeecCcccCccchhccch
Confidence 6 8999999999999998888988998888888899999888788888999999999999999999999999999999
Q ss_pred cccCCCCcccccccccCCCCCCccEEEEEEEEeccchHHHHHHHHHHHHhCcccccCceeecceEEEEecCCCCCCCCCC
Q 009304 318 TCLDSPQDSLITACAWDPRIKGEFFHQTTFSIRLSVVKSFIDDIQKLIKLEPKALCGLELYNGILMRYVKASSAYLGKQE 397 (538)
Q Consensus 318 ~~~~~~~~~~~~~~~w~~r~~~~~~~~~E~~vP~~~~~~~i~dv~~l~~~~~~~~~~~~~~~pi~iRfv~~s~a~Ls~~~ 397 (538)
+|+++..++ +.|.|++|+.|.||+|+.++||++++.+||.+++.+.+.+++.+|+.+.+.||+|||+++|.+||+...
T Consensus 347 sCl~s~~~g--~~~~W~~ri~g~f~~qt~~s~pl~~~~~ai~dik~l~~ie~~~~c~~~~~~pi~iR~~t~sPayl~~t~ 424 (518)
T KOG4730|consen 347 SCLDSQSDG--TACEWDPRIKGFFFHQTTFSIPLTAVKDAINDIKDLVKIEPKSLCGLETYNPILIRYVTSSPAYLGKTS 424 (518)
T ss_pred hhhhhccCc--cccCCCccccCchhheeeeccchhhhhhHhhhhhhhcccChhhhhhhhhccceeEEEecCCchhhccCc
Confidence 999998888 799999999999999999999999999999999999999999999999999999999999999999989
Q ss_pred CeEEEEEeEeccC--CCCCccchHH-HHHHHHHHHHhhcCCeeccCCCCCcchhhHHHhCCCHHHHHHHHHhcCCCCCCC
Q 009304 398 DSLDFDITYYRSK--DPMTPRLYED-ILEEIEQLAVFKYGGFPHWGKNRNLVFDGVIKKYKNAGEFFKVKDKYDPLGLFS 474 (538)
Q Consensus 398 d~~~i~i~~y~~~--~~~~p~~~~~-~~~eie~~~~~k~gGrPHWgK~~~~~~~~~~~~Yp~~~~F~~~r~~~DP~g~F~ 474 (538)
+.|.|++.||+.. +|-+||.|++ ++++||||++.+|||.||||||++++|+++.++||++++|+++|+++||+|+|+
T Consensus 425 ~~~~fd~~Y~~a~dyrp~~~~l~e~~~~e~lEq~al~kyna~PHWaKn~~lafe~vi~ky~n~~~flkvr~~lDP~~lFs 504 (518)
T KOG4730|consen 425 EDCDFDTTYYRAKDYRPLTPRLYEDFYFEELEQIALFKYNAKPHWAKNRNLAFEGVIRKYKNLDKFLKVRKELDPKGLFS 504 (518)
T ss_pred ccceeeeeeeeccCCCcCCCCcchhHHHHHHHHHHHHHhcCCcchhhhhhhhHHHHHHhccChHHHHHHHHhcCccchhh
Confidence 9999999999987 7889999999 899999999889999999999999999999999999999999999999999999
Q ss_pred chhhHhhhCCCCC
Q 009304 475 SEWTDQVLGLKEG 487 (538)
Q Consensus 475 n~~~~~llg~~~~ 487 (538)
|+|.+++||..|.
T Consensus 505 sew~d~il~~~g~ 517 (518)
T KOG4730|consen 505 SEWTDQILGVKGN 517 (518)
T ss_pred hhhHHHHhcccCC
Confidence 9999999998874
No 3
>PLN00107 FAD-dependent oxidoreductase; Provisional
Probab=100.00 E-value=4.3e-87 Score=642.51 Aligned_cols=245 Identities=64% Similarity=1.185 Sum_probs=237.3
Q ss_pred hhccccccCCcc--ccCcccccccccccccccccCCCCcccccccccCCCCC-CccEEEEEEEEeccchHHHHHHHHHHH
Q 009304 289 TSAFGLTNNGIA--FTGYPVIGHHNRLQSSGTCLDSPQDSLITACAWDPRIK-GEFFHQTTFSIRLSVVKSFIDDIQKLI 365 (538)
Q Consensus 289 ~~~~g~~~~~~~--~t~~pvvg~~~~~~~~~~~~~~~~~~~~~~~~w~~r~~-~~~~~~~E~~vP~~~~~~~i~dv~~l~ 365 (538)
..+||++|+|.. ||||||||+|++||+||+|+++++++++++|+||+|++ |.+|+|+||+||++++.++|++|++|+
T Consensus 6 ~~~~g~~~~~~~~~f~g~pv~g~q~~~~~sg~c~~~~~~~~~~~c~wd~r~~~g~~F~E~EyaVP~e~~~~aL~elr~l~ 85 (257)
T PLN00107 6 AGHLAKQRRGVIPPFPGAAVIGSQDRIMSSGACLDGADDGLITACPWDPRIKHGEFFFQSAISVPLSGAAAFINDIKALR 85 (257)
T ss_pred hhhhCcccCCccccccCCceeccccccccccccccCccccccccCCCCccccCCcceEEEEEEecHHHHHHHHHHHHHHH
Confidence 467999999977 99999999999999999999999999999999999998 999999999999999999999999999
Q ss_pred HhCcccccCceeecceEEEEecCCCCCCCCCCCeEEEEEeEeccC-CCCCccchHHHHHHHHHHHHhhcCCeeccCCCCC
Q 009304 366 KLEPKALCGLELYNGILMRYVKASSAYLGKQEDSLDFDITYYRSK-DPMTPRLYEDILEEIEQLAVFKYGGFPHWGKNRN 444 (538)
Q Consensus 366 ~~~~~~~~~~~~~~pi~iRfv~~s~a~Ls~~~d~~~i~i~~y~~~-~~~~p~~~~~~~~eie~~~~~k~gGrPHWgK~~~ 444 (538)
+.++..+|++++++|||||||++|++|||++||+|+|+|++|++. ++.+|+.|+++|++||||+|.||||||||||+|+
T Consensus 86 ~~~~~~l~~~ev~fPIevR~vaADdawLSp~rDSv~I~~~~yr~~~~~~~pr~~~~~f~eiEqial~kygGRPHWGK~h~ 165 (257)
T PLN00107 86 DIEPDALCGLELNYGVLLRYVRASPAHLGKEEDALDFDLTYYRSKDDPAAPRLHEDAMEEIEQMAILKYGALPHWGKNRN 165 (257)
T ss_pred HhCcccccccccccCeEEEEecCcchhhCCCCCeEEEEEEEecccCCccccccHHHHHHHHHHHHHHhcCCcCCchhccC
Confidence 999988999999999999999999999999999999999999998 7888999999999999998899999999999999
Q ss_pred cchhhHHHhCCCHHHHHHHHHhcCCCCCCCchhhHhhhCC--CCCccccCCCCCCcceeecCCCCCCCCCCCccccCCcc
Q 009304 445 LVFDGVIKKYKNAGEFFKVKDKYDPLGLFSSEWTDQVLGL--KEGVTIYKEGCALEGLCICSQDIHCAPTKGYLCRPGKV 522 (538)
Q Consensus 445 ~~~~~~~~~Yp~~~~F~~~r~~~DP~g~F~n~~~~~llg~--~~~~~~~~~~c~~~~~c~c~~~~hc~~~~~~~c~~~~~ 522 (538)
+++++++++||+|++|+++|+++||+|+|+|+|++++||+ .|+++++++|||+||+|+||+|+||||+||||||||+|
T Consensus 166 l~~~~l~~lYPr~~dFlavR~~lDP~G~F~N~yl~rllg~~~~~~~~~~~~gCa~eg~C~C~~d~HC~p~~g~~Crpg~~ 245 (257)
T PLN00107 166 AAFDGAIAKYKKAGEFLKVKERLDPEGLFSSEWSDKILGLAGAGGVSIVKDGCALEGLCICSDDAHCAPEKGYLCRPGKV 245 (257)
T ss_pred CCHHHHHHHCcCHHHHHHHHHHhCCCCccCCHHHHHHhCccCCCCccccCCCccccceEecCCCCCCCCCCCcccCCCcc
Confidence 9999999999999999999999999999999999999999 56899999999999999999999999999999999999
Q ss_pred ccccccccccc
Q 009304 523 YKDARVCTRIS 533 (538)
Q Consensus 523 ~~~~~~c~~~~ 533 (538)
|+||||||+++
T Consensus 246 ~~~arvc~~~~ 256 (257)
T PLN00107 246 YKEARVCRLVA 256 (257)
T ss_pred cccceeeeccC
Confidence 99999999865
No 4
>TIGR01678 FAD_lactone_ox sugar 1,4-lactone oxidases. This model represents a family of at least two different sugar 1,4 lactone oxidases, both involved in synthesizing ascorbic acid or a derivative. These include L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae. Members are proposed to have the cofactor FAD covalently bound at a site specified by Prosite motif PS00862; OX2_COVAL_FAD; 1.
Probab=100.00 E-value=1.2e-77 Score=638.10 Aligned_cols=425 Identities=24% Similarity=0.354 Sum_probs=347.7
Q ss_pred CCCCCCCCCcCEEEeCCCHHHHHHHHHHHHHcCCceEEEeCCCCCCCCCCccCCCCcEEEEcCCCCCeeEEeCCCCEEEE
Q 009304 1 MFPDRSACKAADVAYPTSEQEIISVVSAATIAKRKMKVATRFSHSIPKLVCPDGQDGLLISTKYLNKIINIDTEAMTITM 80 (538)
Q Consensus 1 ~W~~~~~~~p~~v~~P~s~~el~~~v~~a~~~~~~v~v~~ggghS~~~~~~~~~~~gv~Idl~~ln~v~~vd~~~~~vtv 80 (538)
||++++.+.|..+++|+|++||+++|+.|++++.+|+++ |+|||++++++++ |++|||++||+|+++|+++++|||
T Consensus 6 nW~~~~~~~p~~v~~P~s~eev~~iv~~A~~~~~~v~v~-G~GhS~s~~~~~~---gvvIdl~~l~~i~~id~~~~~vtV 81 (438)
T TIGR01678 6 NWAKTYSASPEVYYQPTSVEEVREVLALAREQKKKVKVV-GGGHSPSDIACTD---GFLIHLDKMNKVLQFDKEKKQITV 81 (438)
T ss_pred eCCCcccCCCCEEEecCCHHHHHHHHHHHHHCCCeEEEE-CCCCCCCCCccCC---eEEEEhhhcCCceEEcCCCCEEEE
Confidence 899999999999999999999999999999999999999 9999999988764 899999999999999999999999
Q ss_pred eCCCCHHHHHHHHHHCCCcccccccccccchhhhhccCCcCCCccCCCCchhcceeEEEEEeeCCCCCCcccEEEcCCC-
Q 009304 81 ESGVTLRQIIGESAKAGLALPYTPYWWGLTIGGLIGTGAHGSSLWGRGSSIHDYVVELRIVSSGGPDDGYAKVRVLNEN- 159 (538)
Q Consensus 81 ~aGv~l~~L~~~l~~~Gl~l~~~~~~~~~tvGG~i~tg~hGs~~~~~~G~~~d~V~~l~vV~~~G~~~g~~~v~~~~~~- 159 (538)
+||+++.+|.+.|.++|+++|+.++++.+||||++++|+||++. ++|.++|+|+++++|+++|+ +++++++
T Consensus 82 ~aG~~l~~L~~~L~~~Gl~l~~~g~~~~~TvGG~iatg~hG~~~--~~G~~~d~V~~l~vV~~~G~------i~~~s~~~ 153 (438)
T TIGR01678 82 EAGIRLYQLHEQLDEHGYSMSNLGSISEVSVAGIISTGTHGSSI--KHGILATQVVALTIMTADGE------VLECSEER 153 (438)
T ss_pred cCCCCHHHHHHHHHHcCCEecCCCCCCCceeeehhcCCCCCCcc--ccCcHHhhEEEEEEEcCCCc------EEEeCCCC
Confidence 99999999999999999999999999999999999999999875 48999999999999999999 9988874
Q ss_pred ccc-hhhhhcCCCCeEEEEEEEEEeEecCceeEEEEecCchhHHHHHhhhccccceeEEEEeeCCCcEEEEecCCCCCCC
Q 009304 160 DQD-LDAAKVSLGVLGVISQVTLKLQPLFKRSITFLMKNDSELGDEAGSFGHQHEFADIVWYPSQHKALYRIDDRISSNA 238 (538)
Q Consensus 160 ~~~-f~a~~~s~G~lGVIt~vtl~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~P~~~~~~~~~~~r~~~~~ 238 (538)
+++ |+++++|+|+|||||++||+++|.+.+.......+.+++.+.+.++.++++|++++|||++++++++..++++..
T Consensus 154 ~~dlf~a~~~~~G~lGIIt~vtl~l~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~~~~~~~- 232 (438)
T TIGR01678 154 NADVFQAARVSLGCLGIIVTVTIQVVPQFHLQETSFVSTLKELLDNWDSHWKSSEFFRVLWFPYTENVVIWRQNKTNKA- 232 (438)
T ss_pred ChhHHHHHhcCCCceEeeEEEEEEEEeccceEEEEecCCHHHHHHHHHHHhhcCCeEEEEEEcCCCcEEEEECccCCCC-
Confidence 444 999999999999999999999999998887777888999999999999999999999999999998888886632
Q ss_pred CCCccccccccccchhhhhhhhccchhhhhhcccccccccccchhhhhhhhhccccccCCccccCccccccccccccccc
Q 009304 239 TGNAVYNYIPFRSTLSATLATIRTTEENQESRSDANGKCIGAKLVTSTLVTSAFGLTNNGIAFTGYPVIGHHNRLQSSGT 318 (538)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~t~~pvvg~~~~~~~~~~ 318 (538)
+....+.+.+. .......+.+... +++. +.....+..+.+...-.....+..+++|.+++++.
T Consensus 233 ~~~~~~~~~~~--------~~~~~~~~~l~~~----~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~--- 295 (438)
T TIGR01678 233 PSSPSNSFWDY--------KLGFFLYEFLLWT----SKYL--PCLTPWIERFFFWMLYGEKSSTKKESSNLSHKIFT--- 295 (438)
T ss_pred cccccchhhhh--------hHHHHHHHHHHHH----Hhhc--ccccHHHHHHHHHhhcCCccCCCcceecchHHhhc---
Confidence 11111111100 0000011111000 0110 00000011111111000111123356778887764
Q ss_pred ccCCCCcccccccccCCCCCCccEEEEEEEEeccchHHHHHHHHHHHHhCcccccCceeecceEEEEecC---CCCCCCC
Q 009304 319 CLDSPQDSLITACAWDPRIKGEFFHQTTFSIRLSVVKSFIDDIQKLIKLEPKALCGLELYNGILMRYVKA---SSAYLGK 395 (538)
Q Consensus 319 ~~~~~~~~~~~~~~w~~r~~~~~~~~~E~~vP~~~~~~~i~dv~~l~~~~~~~~~~~~~~~pi~iRfv~~---s~a~Ls~ 395 (538)
+.|.| .++++||+||++++.++|++|++++++++... ++++++|||+||+++ |++||||
T Consensus 296 ----------~~~~f-------~~~~~Ey~vP~~~~~~al~~l~~~~~~~~~~~-~~~v~fpiEvR~~~~~~~Dd~wLSp 357 (438)
T TIGR01678 296 ----------MECRF-------SQHVQEWGIPREKTKEALLELKAMLEAHAKNK-EVYAHYPVEVRFTRGTLPDECLLSP 357 (438)
T ss_pred ----------cccee-------ehhceeecccHHHHHHHHHHHHHHHHhccccc-CceEeeeEEEEEeCCCCCCceecCC
Confidence 13444 34578999999999999999999999875433 467999999999999 9999998
Q ss_pred --CCCeEEEEEeEeccCCCCCccchHHHHHHHHHHHHhhcCCeeccCCCCC-cchhhHHHhCCCHHHHHHHHHhcCCCCC
Q 009304 396 --QEDSLDFDITYYRSKDPMTPRLYEDILEEIEQLAVFKYGGFPHWGKNRN-LVFDGVIKKYKNAGEFFKVKDKYDPLGL 472 (538)
Q Consensus 396 --~~d~~~i~i~~y~~~~~~~p~~~~~~~~eie~~~~~k~gGrPHWgK~~~-~~~~~~~~~Yp~~~~F~~~r~~~DP~g~ 472 (538)
++|+|+|+|++|++.+.+.| |++||+++|++ |++|||||||||+|. ++.++++++||+|++|+++|+++||+|+
T Consensus 358 ~~~rds~~i~~~~y~~~~~~~~--~~~~f~~~E~i-~~~~gGRPHWgK~h~~~~~~~l~~~YP~~~~F~~vr~~~DP~g~ 434 (438)
T TIGR01678 358 CFQVDTCYINAIMYRPFGKDVP--RLDYFLAYETI-MKKFGGKPHWAKAHNVCKQKDFEEMYPTLHKFCDIRKKLDPTGV 434 (438)
T ss_pred CCCCceEEEEEEEccCCCCCCC--HHHHHHHHHHH-HHHcCCCCCchhcccccCHHHHHHHCcCHHHHHHHHHhhCcccc
Confidence 69999999999998866555 88999999999 799999999999999 8888999999999999999999999999
Q ss_pred CCch
Q 009304 473 FSSE 476 (538)
Q Consensus 473 F~n~ 476 (538)
|+|+
T Consensus 435 F~N~ 438 (438)
T TIGR01678 435 FLNS 438 (438)
T ss_pred cCCC
Confidence 9996
No 5
>TIGR01676 GLDHase galactonolactone dehydrogenase. This model represents L-Galactono-gamma-lactone dehydrogenase (EC 1.3.2.3). This enzyme catalyzes the final step in ascorbic acid biosynthesis in higher plants. This protein is homologous to ascorbic acid biosynthesis enzymes of other species: L-gulono-gamma-lactone oxidase in rat and L-galactono-gamma-lactone oxidase in yeast. All three covalently bind the cofactor FAD.
Probab=100.00 E-value=2.3e-76 Score=631.74 Aligned_cols=442 Identities=15% Similarity=0.206 Sum_probs=339.8
Q ss_pred CCCCCCCCCcCEEEeCCCHHHHHHHHHHHHHcCCceEEEeCCCCCCCCCCccCCCCcEEEEcCCCCCeeEEeCCCCEEEE
Q 009304 1 MFPDRSACKAADVAYPTSEQEIISVVSAATIAKRKMKVATRFSHSIPKLVCPDGQDGLLISTKYLNKIINIDTEAMTITM 80 (538)
Q Consensus 1 ~W~~~~~~~p~~v~~P~s~~el~~~v~~a~~~~~~v~v~~ggghS~~~~~~~~~~~gv~Idl~~ln~v~~vd~~~~~vtv 80 (538)
||++++.+.|..+++|+|++||+++|+.|+++|.+|+++ |+|||++++++++ +.+|||++||+|++||+++++|||
T Consensus 53 NWsg~~~~~p~~~~~P~s~eEV~~iV~~A~~~g~~Vr~~-GsGhS~sg~a~t~---g~lldL~~ln~Vl~vD~~~~tVtV 128 (541)
T TIGR01676 53 NWSGTHEVLTRTFHQPEAIEELEGIVKQANEKKARIRPV-GSGLSPNGIGLSR---AGMVNLALMDKVLEVDEEKKRVRV 128 (541)
T ss_pred ccCCccccCcceEECCCCHHHHHHHHHHHHHcCCcEEEE-CCCcCCCCcccCC---CeEEEhhhCCCCEEEcCCCCEEEE
Confidence 899999999999999999999999999999999999999 9999999998875 568999999999999999999999
Q ss_pred eCCCCHHHHHHHHHHCCCcccccccccccchhhhhccCCcCCCccCCCCchhcceeEEEEEeeCCCCCCcccEEEcCCC-
Q 009304 81 ESGVTLRQIIGESAKAGLALPYTPYWWGLTIGGLIGTGAHGSSLWGRGSSIHDYVVELRIVSSGGPDDGYAKVRVLNEN- 159 (538)
Q Consensus 81 ~aGv~l~~L~~~l~~~Gl~l~~~~~~~~~tvGG~i~tg~hGs~~~~~~G~~~d~V~~l~vV~~~G~~~g~~~v~~~~~~- 159 (538)
|||+++.+|.++|.++|+++++.++++.+||||+|+||+||++. ++|.++|+|++++||+++|+ +++++++
T Consensus 129 ~AG~~l~~L~~~L~~~Glal~n~gsi~~~TIGGaiatgtHGtg~--~~G~l~d~V~~l~lVta~G~------vv~~s~~~ 200 (541)
T TIGR01676 129 QAGIRVQQLVDAIKEYGITLQNFASIREQQIGGIIQVGAHGTGA--KLPPIDEQVIAMKLVTPAKG------TIEISKDK 200 (541)
T ss_pred cCCCCHHHHHHHHHHcCCEeccCCCCCCceEccccccCCcCCCC--CCCCHHHhEEEEEEEECCCC------EEEECCCC
Confidence 99999999999999999999999999999999999999999987 48999999999999999998 8888774
Q ss_pred cc-chhhhhcCCCCeEEEEEEEEEeEecCceeEEEEecCchhHHHHHhhhccccceeEEEEeeCCCcEEEEecCCCCCCC
Q 009304 160 DQ-DLDAAKVSLGVLGVISQVTLKLQPLFKRSITFLMKNDSELGDEAGSFGHQHEFADIVWYPSQHKALYRIDDRISSNA 238 (538)
Q Consensus 160 ~~-~f~a~~~s~G~lGVIt~vtl~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~P~~~~~~~~~~~r~~~~~ 238 (538)
++ +|+|+++|+|+|||||+|||+++|++.+.......+.+++.+.+++++++++|++++|||+++.++++..|+++...
T Consensus 201 ~pdLF~AargslG~LGVItevTLr~~Pa~~l~~~~~~~~~~e~l~~~~~~~~~~~h~~f~wfP~t~~~~~~~~~~~~~~~ 280 (541)
T TIGR01676 201 DPELFFLARCGLGGLGVVAEVTLQCVERQELVEHTFISNMKDIKKNHKKFLADNKHVKYLHIPYTDAIVVVTCNPISKSR 280 (541)
T ss_pred CHHHHHHHhcCCCceEeEEEEEEEEEeccceeEEEEecCHHHHHHHHHHHHhcCCcEEEEEEcCCCceeEEEcCCCCccc
Confidence 45 49999999999999999999999999987766678999999999999999999999999999999999988865211
Q ss_pred C-CCcccccc---ccccchhh---hhhhhc--cch-----hhhhhccccccccccc----chhhhhhhhhccccccCCcc
Q 009304 239 T-GNAVYNYI---PFRSTLSA---TLATIR--TTE-----ENQESRSDANGKCIGA----KLVTSTLVTSAFGLTNNGIA 300 (538)
Q Consensus 239 ~-~~~~~~~~---~~~~~~~~---~~~~~r--~~~-----~~~~~~~~~~~~~~~~----~~~~~~~~~~~~g~~~~~~~ 300 (538)
. ....+.+. ...+...+ .....+ ... ..+. +......+... +..+.....++.-... ...
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~l~~~~~~~~~l~~~~~~~in~~~~~-~~~ 358 (541)
T TIGR01676 281 GPPKFKPKYTSEEAIQHVRDLYRESLKKYRGQVADSASEEPDID-EFSFTELRDKLLALDPLNKEHVIEINKAEAE-FWR 358 (541)
T ss_pred CCCCccccccchhhhhhhhhhhhhhhhhhhcccccccccccchh-hhHHHHHHHHHhhCCcccchhHHHHHHHHHH-Hhh
Confidence 1 00000000 00000000 000000 000 0000 00000000100 1111100011000000 000
Q ss_pred ccCcccccccccccccccccCCCCcccccccccCCCCCCccEEEEEEEEecc-------chHHHHHHHHHHHHhCccccc
Q 009304 301 FTGYPVIGHHNRLQSSGTCLDSPQDSLITACAWDPRIKGEFFHQTTFSIRLS-------VVKSFIDDIQKLIKLEPKALC 373 (538)
Q Consensus 301 ~t~~pvvg~~~~~~~~~~~~~~~~~~~~~~~~w~~r~~~~~~~~~E~~vP~~-------~~~~~i~dv~~l~~~~~~~~~ 373 (538)
...-..+|++++++.. .|. ..++++||+||++ +..++|++|+++++++.
T Consensus 359 ~s~~~~v~~S~~vf~~-------------~~~-------f~q~~~EyaiP~e~~~~~~~~~~~~l~el~~~i~~~~---- 414 (541)
T TIGR01676 359 KSEGYKVGWSDEILGF-------------DCG-------GHQWVSETCFPAGTLAKPNMKDIEYIEELKQLIEKEN---- 414 (541)
T ss_pred cCCceEeCcHHHhcCc-------------ccc-------cceEEEEEEEecccccccccchHHHHHHHHHHHHhcC----
Confidence 0111256788887741 232 3567789999999 66999999999999763
Q ss_pred CceeecceEEEEecCCCCCCCC--CCC----eEEEEEeEeccCCCC--CccchHHHH---HHHHHHHHhhcCCeeccCCC
Q 009304 374 GLELYNGILMRYVKASSAYLGK--QED----SLDFDITYYRSKDPM--TPRLYEDIL---EEIEQLAVFKYGGFPHWGKN 442 (538)
Q Consensus 374 ~~~~~~pi~iRfv~~s~a~Ls~--~~d----~~~i~i~~y~~~~~~--~p~~~~~~~---~eie~~~~~k~gGrPHWgK~ 442 (538)
+++++|||+||+++|++|||| ++| +|||.|++|++..+. .+...++|| ..+|+++..+|||||||||.
T Consensus 415 -~~~~fPiEvR~ta~Dd~~LSpa~~r~~~~~s~~I~v~~y~~~~~~~~~~~~~~~~f~~~~~~e~i~~~~ygGRPHWgK~ 493 (541)
T TIGR01676 415 -IPAPAPIEQRWTACSKSPMSPASSSADDDIFSWVGIIMYLPTMDARQRKEITEEFFHYRHLTQALLWDHFSAFEHWAKI 493 (541)
T ss_pred -CCCCCCeEEEeecCCCcccCCccCCCCCCceEEEEEEecCCCCChhhhhhhHHHHHhhhHHHHHHHHHhcCCccCccee
Confidence 458999999999999999998 678 799999999976310 000114788 67777756666999999999
Q ss_pred CCc-chhh-------HHHhCCCHHHHHHHHHhcCCCCCCCchhhHhhh
Q 009304 443 RNL-VFDG-------VIKKYKNAGEFFKVKDKYDPLGLFSSEWTDQVL 482 (538)
Q Consensus 443 ~~~-~~~~-------~~~~Yp~~~~F~~~r~~~DP~g~F~n~~~~~ll 482 (538)
|.+ +.++ ++++|| |++|+++|+++||+|+|+|+|+++||
T Consensus 494 h~~~~~~~l~~~yprl~~~YP-~d~F~~~R~~lDP~g~F~N~yL~~lf 540 (541)
T TIGR01676 494 EVPKDKDELAALQARLKKKFP-VDASNKARKALDPNKILSNNKLEKLF 540 (541)
T ss_pred cCCCCHHHHHHHHHHHHhhCC-HHHHHHHHHHhCCCCccccHHHHHhh
Confidence 999 9999 777788 89999999999999999999999987
No 6
>TIGR01679 bact_FAD_ox FAD-linked oxidoreductase. This model represents a family of bacterial oxidoreductases with covalently linked FAD, closely related to two different eukaryotic oxidases, L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae.
Probab=100.00 E-value=7.3e-75 Score=616.07 Aligned_cols=413 Identities=23% Similarity=0.339 Sum_probs=340.5
Q ss_pred CCCCCCCCCcCEEEeCCCHHHHHHHHHHHHHcCCceEEEeCCCCCCCCCCccCCCCcEEEEcCCCCCeeEEeCCCCEEEE
Q 009304 1 MFPDRSACKAADVAYPTSEQEIISVVSAATIAKRKMKVATRFSHSIPKLVCPDGQDGLLISTKYLNKIINIDTEAMTITM 80 (538)
Q Consensus 1 ~W~~~~~~~p~~v~~P~s~~el~~~v~~a~~~~~~v~v~~ggghS~~~~~~~~~~~gv~Idl~~ln~v~~vd~~~~~vtv 80 (538)
||++++.+.|..+++|+|++||+++|+.|++ +|+++ |+|||++++++++ |++|||++||+|+++|+++++|||
T Consensus 3 nW~~~~~~~p~~v~~P~s~~ev~~~v~~a~~---~v~~~-G~Ghs~~~~~~~~---g~~idl~~l~~i~~~d~~~~~v~v 75 (419)
T TIGR01679 3 NWSGEQVAAPSAIVRPTDEGELADVIAQAAK---PVRAV-GSGHSFTDLACTD---GTMISLTGLQGVVDVDQPTGLATV 75 (419)
T ss_pred CCCCCccCCCCeEECCCCHHHHHHHHHHhCC---CEEEE-eCCCCCCCcccCC---CEEEEhhHcCCceeecCCCCEEEE
Confidence 8999999999999999999999999999863 69998 8999999887664 899999999999999999999999
Q ss_pred eCCCCHHHHHHHHHHCCCcccccccccccchhhhhccCCcCCCccCCCCchhcceeEEEEEeeCCCCCCcccEEEcCCC-
Q 009304 81 ESGVTLRQIIGESAKAGLALPYTPYWWGLTIGGLIGTGAHGSSLWGRGSSIHDYVVELRIVSSGGPDDGYAKVRVLNEN- 159 (538)
Q Consensus 81 ~aGv~l~~L~~~l~~~Gl~l~~~~~~~~~tvGG~i~tg~hGs~~~~~~G~~~d~V~~l~vV~~~G~~~g~~~v~~~~~~- 159 (538)
|||+++.+|.++|.++|+++|+.++++.+||||+++|++||++. ++|.++|+|++++||+++|+ +++++++
T Consensus 76 ~aG~~l~~l~~~L~~~G~~l~~~~~~~~~tvGG~ia~~~hG~g~--~~G~~~d~V~~l~vV~a~G~------v~~~~~~~ 147 (419)
T TIGR01679 76 EAGTRLGALGPQLAQRGLGLENQGDIDPQSIGGALGTATHGTGV--RFQALHARIVSLRLVTAGGK------VLDLSEGD 147 (419)
T ss_pred cCCCCHHHHHHHHHHcCCccccCCCCCCceeccceecCCCCCCc--cCCchhhhEEEEEEEcCCCC------EEEEcCCC
Confidence 99999999999999999999999999899999999999999986 48999999999999999999 9988874
Q ss_pred cc-chhhhhcCCCCeEEEEEEEEEeEecCceeEEEEecCchhHHHHHhhhccccceeEEEEeeCCCcEEEEecCCCCCCC
Q 009304 160 DQ-DLDAAKVSLGVLGVISQVTLKLQPLFKRSITFLMKNDSELGDEAGSFGHQHEFADIVWYPSQHKALYRIDDRISSNA 238 (538)
Q Consensus 160 ~~-~f~a~~~s~G~lGVIt~vtl~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~P~~~~~~~~~~~r~~~~~ 238 (538)
++ +|+|++||+|+|||||++|||++|.+++.......+.++..+.+.++++.+++.+++|+|++++++++..++++...
T Consensus 148 ~~dLf~a~~g~~G~lGVIt~vtl~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 227 (419)
T TIGR01679 148 DQDMYLAARVSLGALGVISQVTLQTVALFRLRRRDWRRPLAQTLERLDEFVDGHRHFEFYVFPFAGKALTITMDRSDEQP 227 (419)
T ss_pred CHHHHHHHHhCCCceEEEEEEEEEeecceEeEEEEEecCHHHHHHHHHHHHhcCCeEEEEEecCCCeEEEEECCcCCCcc
Confidence 45 49999999999999999999999999988888888989999999999999999999999999999999988876321
Q ss_pred CCCccccccccccchhhhhhhhccchhhhhhcccccccccccchhhhhhhhhccccccCCccccCccccccccccccccc
Q 009304 239 TGNAVYNYIPFRSTLSATLATIRTTEENQESRSDANGKCIGAKLVTSTLVTSAFGLTNNGIAFTGYPVIGHHNRLQSSGT 318 (538)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~t~~pvvg~~~~~~~~~~ 318 (538)
.... ....+. ....++ ..+...+..+......+.... ..+.....++..++++.+
T Consensus 228 ~~~~--~~~~~~------------~~~~~~------~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~r~~~~-- 282 (419)
T TIGR01679 228 KPRQ--RDVDEN------------FLGGLR------LLRQTLRRFPSLRPRLNRLMT---NMMSSETVVDRAYKVFAT-- 282 (419)
T ss_pred cccc--cchhhh------------HHHHHH------HHHHhcccCchhHHHHHHHHH---hhcCCceeeccceEEecc--
Confidence 1000 000000 000000 001111111111111111000 011111234455555421
Q ss_pred ccCCCCcccccccccCCCCCCccEEEEEEEEeccchHHHHHHHHHHHHhCcccccCceeecceEEEEecCCCCCCCC--C
Q 009304 319 CLDSPQDSLITACAWDPRIKGEFFHQTTFSIRLSVVKSFIDDIQKLIKLEPKALCGLELYNGILMRYVKASSAYLGK--Q 396 (538)
Q Consensus 319 ~~~~~~~~~~~~~~w~~r~~~~~~~~~E~~vP~~~~~~~i~dv~~l~~~~~~~~~~~~~~~pi~iRfv~~s~a~Ls~--~ 396 (538)
+ ++.+|.|+||+||++++.++|++|+++++++. ...++||++||+++|++|||| +
T Consensus 283 ---------------~---~~~~f~q~e~~iP~~~~~~al~~i~~~i~~~~-----~~~~~pve~R~~~ad~~~LS~~~~ 339 (419)
T TIGR01679 283 ---------------Q---RKVRFNEMEYHLPRENGRKALQEVIDLVERRS-----PPVMFPIEVRFSAPDDSWLSPFYG 339 (419)
T ss_pred ---------------c---ccceeeEEEEecchhHHHHHHHHHHHHHHhcC-----CCccceEEEEEecCCCcccCCCCC
Confidence 1 23679999999999999999999999999753 247899999999999999995 8
Q ss_pred CCeEEEEEeEeccCCCCCccchHHHHHHHHHHHHhhcCCeeccCCCCCcchhhHHHhCCCHHHHHHHHHhcCCCCCCCch
Q 009304 397 EDSLDFDITYYRSKDPMTPRLYEDILEEIEQLAVFKYGGFPHWGKNRNLVFDGVIKKYKNAGEFFKVKDKYDPLGLFSSE 476 (538)
Q Consensus 397 ~d~~~i~i~~y~~~~~~~p~~~~~~~~eie~~~~~k~gGrPHWgK~~~~~~~~~~~~Yp~~~~F~~~r~~~DP~g~F~n~ 476 (538)
+|+++|.+++|... .+++|++++|+| +.+|||||||||+|.+++++++++||+|++|+++|+++||+|+|+|+
T Consensus 340 r~~~~ia~~~~~~~------~~~~~~~~~e~i-~~~~gGRpHwgK~~~l~~~~l~~~YP~~~~F~~~r~~~DP~g~F~n~ 412 (419)
T TIGR01679 340 RPTCSIAVHQYAGM------DFESYFRAVEPI-FRRYAGRPHWGKRHYLTAATLRERYPRWDDFAAVRDDLDPDRRFLNP 412 (419)
T ss_pred CCcEEEEEEEcCCC------CHHHHHHHHHHH-HHHcCCCCCchhccCCCHHHHHHHCcCHHHHHHHHHHhCCCCccCCH
Confidence 99999999998753 388999999999 79999999999999999999999999999999999999999999999
Q ss_pred hhHhhhC
Q 009304 477 WTDQVLG 483 (538)
Q Consensus 477 ~~~~llg 483 (538)
|++++||
T Consensus 413 ~~~rl~~ 419 (419)
T TIGR01679 413 YTRGLFG 419 (419)
T ss_pred HHHHhhC
Confidence 9999996
No 7
>PLN02465 L-galactono-1,4-lactone dehydrogenase
Probab=100.00 E-value=7.5e-74 Score=617.03 Aligned_cols=444 Identities=17% Similarity=0.237 Sum_probs=344.3
Q ss_pred CCCCCCCCCcCEEEeCCCHHHHHHHHHHHHHcCCceEEEeCCCCCCCCCCccCCCCcEEEEcCCCCCeeEEeCCCCEEEE
Q 009304 1 MFPDRSACKAADVAYPTSEQEIISVVSAATIAKRKMKVATRFSHSIPKLVCPDGQDGLLISTKYLNKIINIDTEAMTITM 80 (538)
Q Consensus 1 ~W~~~~~~~p~~v~~P~s~~el~~~v~~a~~~~~~v~v~~ggghS~~~~~~~~~~~gv~Idl~~ln~v~~vd~~~~~vtv 80 (538)
||++++.+.|..++.|+|++||+++|+.|+++|++|+++ |+|||++++++++ +.+|||++||+|+++|+++++|||
T Consensus 88 NWsg~~~~~p~~vv~P~S~eEV~~iV~~A~~~g~~Vrvv-GsGhS~~~l~~td---~glIdL~~l~~Il~vD~e~~~VtV 163 (573)
T PLN02465 88 NWSGTHEVQTRRYHQPESLEELEDIVKEAHEKGRRIRPV-GSGLSPNGLAFSR---EGMVNLALMDKVLEVDKEKKRVTV 163 (573)
T ss_pred ccccccCCCCCEEEEeCCHHHHHHHHHHHHHcCCcEEEE-cCCcCCCCeeeCC---CEEEECcCCCCcEEEeCCCCEEEE
Confidence 899999999999999999999999999999999999999 8999999988775 568999999999999999999999
Q ss_pred eCCCCHHHHHHHHHHCCCcccccccccccchhhhhccCCcCCCccCCCCchhcceeEEEEEeeCCCCCCcccEEEcCCC-
Q 009304 81 ESGVTLRQIIGESAKAGLALPYTPYWWGLTIGGLIGTGAHGSSLWGRGSSIHDYVVELRIVSSGGPDDGYAKVRVLNEN- 159 (538)
Q Consensus 81 ~aGv~l~~L~~~l~~~Gl~l~~~~~~~~~tvGG~i~tg~hGs~~~~~~G~~~d~V~~l~vV~~~G~~~g~~~v~~~~~~- 159 (538)
+||+++.+|.+.|.++||+|++++++..+||||+|+||+||++.. +|.++|+|++++||+++|+ +++++++
T Consensus 164 ~AG~~l~~L~~~L~~~GLal~n~g~I~~~TIGGaIstGtHGtG~~--~g~i~d~V~~l~lVta~G~------vv~~s~~~ 235 (573)
T PLN02465 164 QAGARVQQVVEALRPHGLTLQNYASIREQQIGGFIQVGAHGTGAR--IPPIDEQVVSMKLVTPAKG------TIELSKED 235 (573)
T ss_pred ccCCCHHHHHHHHHHcCCEeccCCCCCCeeecchhhCCCCCcCCC--cCcHhheEEEEEEEECCCC------EEEECCCC
Confidence 999999999999999999999999999999999999999999874 7899999999999999998 8888774
Q ss_pred cc-chhhhhcCCCCeEEEEEEEEEeEecCceeEEEEecCchhHHHHHhhhccccceeEEEEeeCCCcEEEEecCCCCCCC
Q 009304 160 DQ-DLDAAKVSLGVLGVISQVTLKLQPLFKRSITFLMKNDSELGDEAGSFGHQHEFADIVWYPSQHKALYRIDDRISSNA 238 (538)
Q Consensus 160 ~~-~f~a~~~s~G~lGVIt~vtl~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~P~~~~~~~~~~~r~~~~~ 238 (538)
++ +|+++++++|.|||||+|||+++|.+++.......+.+++.+.+.++++++++++++|||++++++++..|+++...
T Consensus 236 ~pdLF~aar~glG~lGVIteVTLql~P~~~L~~~~~~~~~~~~~~~~~~~~~~~~h~~f~wfP~td~~~v~~~~~~~~~~ 315 (573)
T PLN02465 236 DPELFRLARCGLGGLGVVAEVTLQCVPAHRLVEHTFVSNRKEIKKNHKKWLSENKHIRYMWIPYTDTVVVVTCNPLSKWK 315 (573)
T ss_pred CHHHHhHhhccCCCCcEEEEEEEEEEecCceEEEEEEecHHHHHHHHHHHHHhCcccceeecCCcceEEEEeCCCCCCcc
Confidence 44 59999999999999999999999999987666778889999999999999999999999999999999988864321
Q ss_pred CCCccc-ccc---ccccchhhhhh-hhccchhh------hhhccccccc-ccccchhhhhhhhhccccccCCccccCccc
Q 009304 239 TGNAVY-NYI---PFRSTLSATLA-TIRTTEEN------QESRSDANGK-CIGAKLVTSTLVTSAFGLTNNGIAFTGYPV 306 (538)
Q Consensus 239 ~~~~~~-~~~---~~~~~~~~~~~-~~r~~~~~------~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~t~~pv 306 (538)
+..... .+. ...+...+... ..+...+. ...+...... +...+..++....++. +.........-..
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~l~p~~~~~vn~-~~~~~~~~s~~~~ 394 (573)
T PLN02465 316 EPPKIKPKYSEDERVQPLRDLYKESAGTKSSENPEPDIQEMGFGELRDKLLALDPLDPDHVKRVNA-AEAEFWRRSEGYR 394 (573)
T ss_pred CCcccccccchhhhhhhhhhhhhhhccccccccccccccccchHHHHHHHhhcCccchhhhHHHHH-HHHHHhhcCCCcE
Confidence 111000 000 00000000000 00000000 0000000000 0001111111111100 0000000001125
Q ss_pred ccccccccccccccCCCCcccccccccCCCCCCccEEEEEEEEecc-------chHHHHHHHHHHHHhCcccccCceeec
Q 009304 307 IGHHNRLQSSGTCLDSPQDSLITACAWDPRIKGEFFHQTTFSIRLS-------VVKSFIDDIQKLIKLEPKALCGLELYN 379 (538)
Q Consensus 307 vg~~~~~~~~~~~~~~~~~~~~~~~~w~~r~~~~~~~~~E~~vP~~-------~~~~~i~dv~~l~~~~~~~~~~~~~~~ 379 (538)
+|++++++.. .|. ..++++||+||++ +..++|++|+++++++. +++++
T Consensus 395 v~~S~~if~~-------------~~~-------~~q~~~EyaiP~~~~~~~~~~~~~~l~el~~~i~~~~-----~~~~f 449 (573)
T PLN02465 395 VGWSDEILGF-------------DCG-------GQQWVSEVCFPAGTLAKPSMKDLEFMEELLALIEKEG-----IPAPA 449 (573)
T ss_pred eCcHHHhcCc-------------ccc-------ceeEEEEEEEeccccccccccHHHHHHHHHHHHHhcC-----CCCCC
Confidence 6788887741 232 4567789999999 66699999999999753 45899
Q ss_pred ceEEEEecCCCCCCCC--C----CCeEEEEEeEeccCCC-----CCccchHHHH-HHHHHHHHhhcCCeeccCCCCC---
Q 009304 380 GILMRYVKASSAYLGK--Q----EDSLDFDITYYRSKDP-----MTPRLYEDIL-EEIEQLAVFKYGGFPHWGKNRN--- 444 (538)
Q Consensus 380 pi~iRfv~~s~a~Ls~--~----~d~~~i~i~~y~~~~~-----~~p~~~~~~~-~eie~~~~~k~gGrPHWgK~~~--- 444 (538)
|||+||+++|++|||| + +++|||.|++|++.+. ..-..+.+|| .++|+| +.+|||||||||.|.
T Consensus 450 PiE~R~ta~dd~~LSpa~~~~~d~~s~~I~i~~Y~~~~~~~~~~~~~~~~~~yf~~~~e~i-~~~yggRPHWgK~h~~~~ 528 (573)
T PLN02465 450 PIEQRWTASSSSPMSPASSPSPDDLHSWVGIIMYLPTEDERQRKEITEEFFHYRKKTQRNL-WDKYSAYEHWAKIEVPKD 528 (573)
T ss_pred ceEEEeecCCccccCcccCCCCCCceEEEEEEeccCCChhhhhhhhhHHHHHHHHHHHHHH-HHHcCCCcccceeccccc
Confidence 9999999999999998 5 4499999999997631 0111235888 999999 899999999999999
Q ss_pred -----cchhhHHHhCCCHHHHHHHHHhcCCCCCCCchhhHhhhCC
Q 009304 445 -----LVFDGVIKKYKNAGEFFKVKDKYDPLGLFSSEWTDQVLGL 484 (538)
Q Consensus 445 -----~~~~~~~~~Yp~~~~F~~~r~~~DP~g~F~n~~~~~llg~ 484 (538)
++.++++++|| |++|+++|+++||+|+|+|+|+++|||.
T Consensus 529 ~~~~~~~~~~L~~~YP-~d~F~~~R~~lDP~g~f~N~~L~~lf~~ 572 (573)
T PLN02465 529 KEELEALRERLRKRFP-VDAFNKARKELDPKGILSNNLLEKLFPK 572 (573)
T ss_pred cchhhcCHHHHHhhCC-HHHHHHHHHHhCCCCccCCHHHHHhhCC
Confidence 99999999999 9999999999999999999999999985
No 8
>PLN02441 cytokinin dehydrogenase
Probab=100.00 E-value=3.4e-41 Score=361.64 Aligned_cols=423 Identities=20% Similarity=0.270 Sum_probs=288.8
Q ss_pred CCCCCCCCCcCEEEeCCCHHHHHHHHHHHH--HcCCceEEEeCCCCCCCCCCccCCCCcEEEEcCCCCC------eeEEe
Q 009304 1 MFPDRSACKAADVAYPTSEQEIISVVSAAT--IAKRKMKVATRFSHSIPKLVCPDGQDGLLISTKYLNK------IINID 72 (538)
Q Consensus 1 ~W~~~~~~~p~~v~~P~s~~el~~~v~~a~--~~~~~v~v~~ggghS~~~~~~~~~~~gv~Idl~~ln~------v~~vd 72 (538)
||++...+.|.+|++|+|++||+++|+.|+ +++.+|+++ |+|||+.+++.+ .+|++|||++||+ ++++|
T Consensus 56 d~g~~~~~~P~aVv~P~S~eDVa~iVr~A~~~~~~~~V~~r-GgGHS~~G~a~~--~~GivIdms~Ln~i~~~~~ii~vd 132 (525)
T PLN02441 56 DFGNLVHSLPAAVLYPSSVEDIASLVRAAYGSSSPLTVAAR-GHGHSLNGQAQA--PGGVVVDMRSLRGGVRGPPVIVVS 132 (525)
T ss_pred CcccccCCCCCEEEeCCCHHHHHHHHHHHhhccCCceEEEE-CCCcCCCCCccC--CCeEEEECCCCCCcCccCceEEEc
Confidence 699999999999999999999999999997 568888888 999999988876 3599999999999 78999
Q ss_pred CCCCEEEEeCCCCHHHHHHHHHHCCCcccccccccccchhhhhccCCcCCCccCCCCchhcceeEEEEEeeCCCCCCccc
Q 009304 73 TEAMTITMESGVTLRQIIGESAKAGLALPYTPYWWGLTIGGLIGTGAHGSSLWGRGSSIHDYVVELRIVSSGGPDDGYAK 152 (538)
Q Consensus 73 ~~~~~vtv~aGv~l~~L~~~l~~~Gl~l~~~~~~~~~tvGG~i~tg~hGs~~~~~~G~~~d~V~~l~vV~~~G~~~g~~~ 152 (538)
.+..+|+|++|++|.+|.+++.++|+++++.+++..+||||+++|+++|.... ++|.++|+|++++||+++|+
T Consensus 133 ~~~~~VtV~aG~~~~dv~~~l~~~GlaP~~~~d~~~~TVGG~ist~G~gg~s~-ryG~~~d~Vl~leVVtadGe------ 205 (525)
T PLN02441 133 GDGPYVDVSGGELWIDVLKATLKHGLAPRSWTDYLYLTVGGTLSNAGISGQAF-RHGPQISNVLELDVVTGKGE------ 205 (525)
T ss_pred CCCCEEEEcCCCCHHHHHHHHHHCCCccCCccccCceEEeEEcCCCCcccccc-ccCcHHHhEEEEEEEeCCce------
Confidence 99999999999999999999999999999999999999999999955443443 58999999999999999999
Q ss_pred EEEcCCC-cc-chhhhhcCCCCeEEEEEEEEEeEecCce--eEEEEecCchhHHHHHhhhcc-----ccceeEEEEeeC-
Q 009304 153 VRVLNEN-DQ-DLDAAKVSLGVLGVISQVTLKLQPLFKR--SITFLMKNDSELGDEAGSFGH-----QHEFADIVWYPS- 222 (538)
Q Consensus 153 v~~~~~~-~~-~f~a~~~s~G~lGVIt~vtl~l~p~~~~--~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~w~P~- 222 (538)
++++++. ++ +|+|++||+|.|||||++||+++|+++. +......+.+++.+.++++++ ..||.+.+|+|.
T Consensus 206 vv~~s~~~n~DLF~Av~GglG~fGIIT~atlrL~Pap~~v~~~~~~y~~~~~~~~d~~~li~~~~~~~~d~veg~~~p~~ 285 (525)
T PLN02441 206 VVTCSPTQNSDLFFAVLGGLGQFGIITRARIALEPAPKRVRWIRVLYSDFSTFTRDQERLISRPPENSFDYVEGFVIVNR 285 (525)
T ss_pred EEEeCCCCChhHHHhhccCCCCcEEEEEEEEEEEecCCceEEEEEEcCCHHHHHHHHHHHHhcCCCCCcceEeEEEEeCC
Confidence 9998874 44 5999999999999999999999999994 334445677778888888776 789999999999
Q ss_pred CCcEEEEecCCCCCCCCCCccccccccccchhhhhhhhccchhhhhhcccccccccc-cch----hh----hhhhhhccc
Q 009304 223 QHKALYRIDDRISSNATGNAVYNYIPFRSTLSATLATIRTTEENQESRSDANGKCIG-AKL----VT----STLVTSAFG 293 (538)
Q Consensus 223 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~-~~~----~~----~~~~~~~~g 293 (538)
++.+..+.. ++.+ |.+.. +. .... +.+ ...-|.. +.. .. .....+..+
T Consensus 286 ~~~~~~~~~--~~~~-~~~~~------~~---~~~~----------~~~-~~~y~le~~~~~~~~~~~~~~~~~~~ll~~ 342 (525)
T PLN02441 286 NGLINNWRS--SFFS-PSDPV------RA---SSLP----------SDG-GVLYCLEVAKYYDEDTSDTVDQEVESLLKR 342 (525)
T ss_pred CCceeeeec--ccCC-ccccc------hh---hccc----------cCC-ceEEEEEEEEeeCCCCccchhhHHHHHHhh
Confidence 555543321 1111 11100 00 0000 000 0000110 000 00 011111112
Q ss_pred cc-cCCccc-cCcccccccccccccccccCCCCcccccccccCCCCCCccEEEEEEEEeccchHHHHHHHHHHHHhCccc
Q 009304 294 LT-NNGIAF-TGYPVIGHHNRLQSSGTCLDSPQDSLITACAWDPRIKGEFFHQTTFSIRLSVVKSFIDDIQKLIKLEPKA 371 (538)
Q Consensus 294 ~~-~~~~~~-t~~pvvg~~~~~~~~~~~~~~~~~~~~~~~~w~~r~~~~~~~~~E~~vP~~~~~~~i~dv~~l~~~~~~~ 371 (538)
+. ..+..| ++.+.+.+-+++... +..+-....|+..+. . ...+||-+++.+|.+.+-+-+-.+.
T Consensus 343 L~~~~~~~~~~d~~y~~fl~rv~~~-------e~~lr~~G~W~~phP---W--lnlfvp~s~i~~f~~~v~~~i~~~~-- 408 (525)
T PLN02441 343 LSFIPGLLFTTDVSYVDFLDRVHVE-------ELKLRSKGLWEVPHP---W--LNLFVPKSRIADFDDGVFKGILLDG-- 408 (525)
T ss_pred cCCCCCCceecccCHHHHHHhhhhH-------HHHHhhcCCcCCCCc---h--hheeCcHHHHHHHHHHHHhhccccc--
Confidence 21 122222 233444455554321 222223567763321 1 4678999999999988865553221
Q ss_pred ccCceeecceEEEEecCCC--CCCC---CCCCeEEEEEeEeccCCCCCccchHHHHHHHHHHH--HhhcCC-----eecc
Q 009304 372 LCGLELYNGILMRYVKASS--AYLG---KQEDSLDFDITYYRSKDPMTPRLYEDILEEIEQLA--VFKYGG-----FPHW 439 (538)
Q Consensus 372 ~~~~~~~~pi~iRfv~~s~--a~Ls---~~~d~~~i~i~~y~~~~~~~p~~~~~~~~eie~~~--~~k~gG-----rPHW 439 (538)
. ..|+++-=+..+. .-+| |.++.. .-|-..++..|+.+ ..+...++-++|+ ..+.|+ .|||
T Consensus 409 ~-----~G~~liyP~~~~~~~~~~s~~~P~~~~~-y~v~~l~~~~p~~~-~~~~~~~~n~~i~~~~~~~g~~~k~Yl~~~ 481 (525)
T PLN02441 409 T-----NGPILVYPLNRSKWDNRTSAVIPDEDIF-YLVALLRSALPSGD-DLEHLLAQNKEILRFCEKAGIGVKQYLPHY 481 (525)
T ss_pred C-----CCeEEEEecccccCCCCCccccCCCCeE-EEEEEcCCCCCCcc-cHHHHHHHHHHHHHHHHHcCCceEEcCCCC
Confidence 1 1345554333332 2343 445543 34455555544322 3455555444542 234466 7888
Q ss_pred CCCCCcchhhHHHhC-CCHHHHHHHHHhcCCCCCCCchhhHhhhCC
Q 009304 440 GKNRNLVFDGVIKKY-KNAGEFFKVKDKYDPLGLFSSEWTDQVLGL 484 (538)
Q Consensus 440 gK~~~~~~~~~~~~Y-p~~~~F~~~r~~~DP~g~F~n~~~~~llg~ 484 (538)
.+.+++++-| ++|++|.+.|++|||.++++.. +++|..
T Consensus 482 -----~~~~~W~~HfG~~w~~f~~~K~~yDP~~iL~pg--q~if~~ 520 (525)
T PLN02441 482 -----TTQEEWKRHFGPKWETFVRRKAKFDPLAILSPG--QRIFNR 520 (525)
T ss_pred -----CCHHHHHHHhcchHHHHHHHHhhCCchhhcCCC--CccCCC
Confidence 6678898888 8999999999999999999987 566653
No 9
>PF04030 ALO: D-arabinono-1,4-lactone oxidase ; InterPro: IPR007173 This domain is specific to D-arabinono-1,4-lactone oxidase 1.1.3.37 from EC, which is involved in the final step of the D-erythroascorbic acid biosynthesis pathway [].; GO: 0003885 D-arabinono-1,4-lactone oxidase activity, 0055114 oxidation-reduction process, 0016020 membrane; PDB: 2VFU_A 2VFV_A 2VFT_A 2VFS_A 2VFR_A.
Probab=100.00 E-value=1.2e-41 Score=340.71 Aligned_cols=257 Identities=23% Similarity=0.353 Sum_probs=99.6
Q ss_pred EEEEeEecCceeEEEEecCchhHHHHHhhhccccceeEEEEeeCCCcEEEEecCCCCCCCCCCccccccccccchhhhhh
Q 009304 179 VTLKLQPLFKRSITFLMKNDSELGDEAGSFGHQHEFADIVWYPSQHKALYRIDDRISSNATGNAVYNYIPFRSTLSATLA 258 (538)
Q Consensus 179 vtl~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~P~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (538)
||||++|++++..+....+.+++++.+.+++++++|.+++|||++++++++..|+++....... +.+
T Consensus 1 VTlq~~p~f~L~~~~~~~~~~e~l~~~~~~~~~~~h~e~~wfP~t~~~~v~~~~~t~~~~~~~~-~~~------------ 67 (259)
T PF04030_consen 1 VTLQCVPAFRLRERERPEPLDEVLENLDELLASHDHFEFFWFPYTDKVVVKTWNRTDEPPSKPR-NWF------------ 67 (259)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccc------------
Confidence 7999999999998888899999999999999999999999999999999999998775531000 000
Q ss_pred hhccchhhhhhcccccccccccchhhhhhhhhccccccCCccccCcccccccccccccccccCCCCcccccccccCCCCC
Q 009304 259 TIRTTEENQESRSDANGKCIGAKLVTSTLVTSAFGLTNNGIAFTGYPVIGHHNRLQSSGTCLDSPQDSLITACAWDPRIK 338 (538)
Q Consensus 259 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~t~~pvvg~~~~~~~~~~~~~~~~~~~~~~~~w~~r~~ 338 (538)
.++.++ +......+..+...+.....+...... ....+....++.+++++.. .|
T Consensus 68 ----~~~~l~-~~~~~~l~~~~~~~p~~~~~~~~~~~~-~~~~~~~~~~~~s~~~~~~-------------~~------- 121 (259)
T PF04030_consen 68 ----DDELLG-NFAFEALLWLARWFPSLTPPINRLSFR-LLSSSPTERVDPSYRVFNF-------------DC------- 121 (259)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ----cccccc-ccccccccccccccccccccccccccc-ccccccccccccccccccc-------------cc-------
Confidence 000010 000111122222222221111110000 0000112356677776631 22
Q ss_pred CccEEEEEEEEeccchHHHHHHHHHHHHhCcccccCceeecceEEEEecCCCCCCCC--CCCeEEEEEeEeccCCCCCcc
Q 009304 339 GEFFHQTTFSIRLSVVKSFIDDIQKLIKLEPKALCGLELYNGILMRYVKASSAYLGK--QEDSLDFDITYYRSKDPMTPR 416 (538)
Q Consensus 339 ~~~~~~~E~~vP~~~~~~~i~dv~~l~~~~~~~~~~~~~~~pi~iRfv~~s~a~Ls~--~~d~~~i~i~~y~~~~~~~p~ 416 (538)
+..|+++||+||++++.++|++++++++++. ++.+++||++||+++|++|||| ++++|+|+|++|++.+...+
T Consensus 122 ~~~~~~~E~~iP~~~~~~~l~~l~~~~~~~~----~~~~~~pie~R~~~~d~~~Ls~~~~~~~~~i~~~~~~~~~~~~~- 196 (259)
T PF04030_consen 122 LVRFWEMEYAIPIENAPEALRELRALIDKEG----GFPVHFPIEVRFVKADDAWLSPAYGRDTCYIEIHMYRPMGDPVP- 196 (259)
T ss_dssp -----EEEEEEEGGGHHHHHHHHHHTHHHHG------GGEEEEEEEEE--B-STT-TTBTS-EEEEEEEE-S-HH---H-
T ss_pred cccceeEEEeeCHHHHHHHHHHHHHHHHHcc----cCceeEEEEEEEECCChhhcCCCCCCCEEEEEEEEeCCcccccc-
Confidence 2467899999999999999999999999766 2347899999999999999998 68999999999997743333
Q ss_pred chHHHHHHHHHHHHhhcCCeeccCCCCCcchhhHHHhCCCHHHHHHHHHhcCCCCCCCchhhHhh
Q 009304 417 LYEDILEEIEQLAVFKYGGFPHWGKNRNLVFDGVIKKYKNAGEFFKVKDKYDPLGLFSSEWTDQV 481 (538)
Q Consensus 417 ~~~~~~~eie~~~~~k~gGrPHWgK~~~~~~~~~~~~Yp~~~~F~~~r~~~DP~g~F~n~~~~~l 481 (538)
+++|++++|++ +.+|||||||||++.++++++++.||+|++|+++|+++||+|+|+|+|++++
T Consensus 197 -~~~~~~~~e~~-~~~~ggRpHWgK~~~~~~~~l~~~Yp~~~~F~~~r~~~DP~g~F~n~~~~r~ 259 (259)
T PF04030_consen 197 -YEEFFRAFEQI-LRKYGGRPHWGKNHTLTAEQLRKLYPRLDDFLAVRKKLDPQGVFLNDYLRRV 259 (259)
T ss_dssp -HHHHHHHHHHH-HGGGT-EE-TTS-----HHHHHHT-TTHHHHHHHHHHH-TT-TT--HHHH--
T ss_pred -HHHHHHHHHHH-HHHcCCEECcCcCCCCCHHHHHHHCcCHHHHHHHHHHhCCCCCCCCHhhhcC
Confidence 89999999999 7999999999999999999999999999999999999999999999999985
No 10
>COG0277 GlcD FAD/FMN-containing dehydrogenases [Energy production and conversion]
Probab=100.00 E-value=6.9e-38 Score=338.06 Aligned_cols=409 Identities=22% Similarity=0.184 Sum_probs=262.6
Q ss_pred CCCCcCEEEeCCCHHHHHHHHHHHHHcCCceEEEeCCCCCCCCCCccCCCCcEEEEcCCCCCeeEEeCCCCEEEEeCCCC
Q 009304 6 SACKAADVAYPTSEQEIISVVSAATIAKRKMKVATRFSHSIPKLVCPDGQDGLLISTKYLNKIINIDTEAMTITMESGVT 85 (538)
Q Consensus 6 ~~~~p~~v~~P~s~~el~~~v~~a~~~~~~v~v~~ggghS~~~~~~~~~~~gv~Idl~~ln~v~~vd~~~~~vtv~aGv~ 85 (538)
....|..++.|+|++||+++|+.|++++++|.++ |+|||..+.+.+. . +++|||++||+|+++|+++++|+||||++
T Consensus 28 ~~~~p~~v~~p~s~~eV~~iv~~a~~~~~~v~pr-G~gts~~g~~~~~-~-gvvl~l~~mn~i~~id~~~~~~~v~aGv~ 104 (459)
T COG0277 28 YRGLPLAVVFPKSEEEVAAILRLANENGIPVVPR-GGGTSLSGGAVPD-G-GVVLDLSRLNRILEIDPEDGTATVQAGVT 104 (459)
T ss_pred hcCCCCEEEccCCHHHHHHHHHHHHHcCCeEEEE-CCCCCccccccCC-C-cEEEEchhhcchhccCcCCCEEEEcCCcc
Confidence 3467889999999999999999999999999998 9999999998885 3 99999999999999999999999999999
Q ss_pred HHHHHHHHHHCCCccccccccc-ccchhhhhccCCcCCCccCCCCchhcceeEEEEEeeCCCCCCcccEEEcCC------
Q 009304 86 LRQIIGESAKAGLALPYTPYWW-GLTIGGLIGTGAHGSSLWGRGSSIHDYVVELRIVSSGGPDDGYAKVRVLNE------ 158 (538)
Q Consensus 86 l~~L~~~l~~~Gl~l~~~~~~~-~~tvGG~i~tg~hGs~~~~~~G~~~d~V~~l~vV~~~G~~~g~~~v~~~~~------ 158 (538)
+.+|.++|.++|+.+|..|+.. .+||||+|+||+||.... +||.++|+|+++++|+++|+ ++++..
T Consensus 105 l~~l~~~l~~~G~~~p~~p~s~~~~tIGG~ia~~~~G~~~~-~yG~~~d~v~~l~vV~~dG~------i~~~~~~~~k~~ 177 (459)
T COG0277 105 LEDLEKALAPHGLFLPVDPSSSGTATIGGNIATNAGGLRSL-RYGLTRDNVLGLRVVLPDGE------ILRLGRKLRKDN 177 (459)
T ss_pred HHHHHHHHHHcCCccCCCccccccceEccchhcCCCCccce-ecccHHHheeEEEEEcCCce------ehhhcCcccCCC
Confidence 9999999999999999999986 899999999999998877 69999999999999999998 555443
Q ss_pred -CccchhhhhcCCCCeEEEEEEEEEeEecCceeEEEE-ecCchhHHHHHhhhccc--------cceeEEEEeeCCCcEE-
Q 009304 159 -NDQDLDAAKVSLGVLGVISQVTLKLQPLFKRSITFL-MKNDSELGDEAGSFGHQ--------HEFADIVWYPSQHKAL- 227 (538)
Q Consensus 159 -~~~~f~a~~~s~G~lGVIt~vtl~l~p~~~~~~~~~-~~~~~~~~~~~~~~~~~--------~~~~~~~w~P~~~~~~- 227 (538)
+.+++.+..+|+|+|||||++||++.|.++...+.. ..+..+........... ....++..-+ ....
T Consensus 178 ~g~dl~~l~iGs~GtlGiit~~tl~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~--~~~~~ 255 (459)
T COG0277 178 AGYDLTALFVGSEGTLGIITEATLKLLPLPETKATAVAGFPSIEAAARLAVAAIALLEALGVIPAALEFMDRP--IKAAE 255 (459)
T ss_pred CCCCHHHhcccCCccceEEEEEEEEeccCCchheEEEEeCCCHHHHHHHHHHHHHhhhhcCCCceeeeecchh--HHHHH
Confidence 233466667899999999999999999988654433 33333333221111110 0111111111 0000
Q ss_pred -EEecCCCCCCCCCCccccccccccchhhhhhhhccchhhhhhcccccccccccchhhhhhhhhccccccCCccccCccc
Q 009304 228 -YRIDDRISSNATGNAVYNYIPFRSTLSATLATIRTTEENQESRSDANGKCIGAKLVTSTLVTSAFGLTNNGIAFTGYPV 306 (538)
Q Consensus 228 -~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~t~~pv 306 (538)
+......|...+..-+...-+.. . .......+...+........ .......... . ... .
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~--------------~~~--~ 315 (459)
T COG0277 256 AYLGGGALPLEAPARLLVEVEGSD-E-AAVDEALEALGELLLEHGLA-RDLVVAQDLA-E--------------AAR--L 315 (459)
T ss_pred HhccccCCCCCCceEEEEEEcCCc-H-HHHHHHHHHHHHHHHhcCCc-eeEEEeCCHH-H--------------HHH--H
Confidence 00000011000000000000000 0 00000000000000000000 0000000000 0 000 0
Q ss_pred ccccccccccccccCCCCcccccccccCCCCCCccEEEEEEEEeccchHHHHHHHHHHHHhCcccccCceeecceEEEEe
Q 009304 307 IGHHNRLQSSGTCLDSPQDSLITACAWDPRIKGEFFHQTTFSIRLSVVKSFIDDIQKLIKLEPKALCGLELYNGILMRYV 386 (538)
Q Consensus 307 vg~~~~~~~~~~~~~~~~~~~~~~~~w~~r~~~~~~~~~E~~vP~~~~~~~i~dv~~l~~~~~~~~~~~~~~~pi~iRfv 386 (538)
+.....+. .+... .+..+..+++.+|.+++.++++++.+.++.... ..++.+++.
T Consensus 316 ~~~r~~~~-----------------~~~~~-~~~~~~~~d~~vp~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~ 370 (459)
T COG0277 316 WLARKGAL-----------------AAAGA-LGPGVIQEDVVVPLEALPEFLREILALLDKAGL-------ALRVALFGH 370 (459)
T ss_pred HHHHHHHH-----------------HHHHh-hCCCccccceeeeHHHHHHHHHHHHHHHHhcCC-------Cceeeeecc
Confidence 00000000 00000 011145678999999999999999999986431 133445554
Q ss_pred cCCCCCCCCCCCeEEEEEeEeccCCCCCccchHHHHHHHHHHHHhhcCCeeccCCCCCcchhhHHHhCCC--HHHHHHHH
Q 009304 387 KASSAYLGKQEDSLDFDITYYRSKDPMTPRLYEDILEEIEQLAVFKYGGFPHWGKNRNLVFDGVIKKYKN--AGEFFKVK 464 (538)
Q Consensus 387 ~~s~a~Ls~~~d~~~i~i~~y~~~~~~~p~~~~~~~~eie~~~~~k~gGrPHWgK~~~~~~~~~~~~Yp~--~~~F~~~r 464 (538)
..+. .+++.+.+...........+..+++.++++ ..+|||+++|.+...+....+...|++ |..|+++|
T Consensus 371 ~~dg--------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~gG~~~~~h~~g~~~~~~~~~~~~~~~~~~~~~k 441 (459)
T COG0277 371 AGDG--------NLHLNILYDVGDEAEELARAEALNEAIEAL-AVELGGSISGEHGIGRTKAEFLELEPGEAWALLRAIK 441 (459)
T ss_pred cCCC--------cceeeeccCCCccHHHHHHHHHHHHHHHHH-HHHhCCeeEEecccchhhHHHHHHHHhHHHHHHHHHH
Confidence 4433 344444443321112223466788888888 689999999999999999899999984 99999999
Q ss_pred HhcCCCCCCCchhhHh
Q 009304 465 DKYDPLGLFSSEWTDQ 480 (538)
Q Consensus 465 ~~~DP~g~F~n~~~~~ 480 (538)
++|||+|+|.+..+..
T Consensus 442 ~~~DP~~i~npg~~~~ 457 (459)
T COG0277 442 RAFDPNGIFNPGKLFR 457 (459)
T ss_pred HhcCCCCCCCCCccCC
Confidence 9999999999987643
No 11
>PLN02805 D-lactate dehydrogenase [cytochrome]
Probab=100.00 E-value=1e-34 Score=316.02 Aligned_cols=192 Identities=25% Similarity=0.281 Sum_probs=164.3
Q ss_pred CCcCEEEeCCCHHHHHHHHHHHHHcCCceEEEeCCCCCCCCCCccCCCCcEEEEcCCCCCeeEEeCCCCEEEEeCCCCHH
Q 009304 8 CKAADVAYPTSEQEIISVVSAATIAKRKMKVATRFSHSIPKLVCPDGQDGLLISTKYLNKIINIDTEAMTITMESGVTLR 87 (538)
Q Consensus 8 ~~p~~v~~P~s~~el~~~v~~a~~~~~~v~v~~ggghS~~~~~~~~~~~gv~Idl~~ln~v~~vd~~~~~vtv~aGv~l~ 87 (538)
..|.+|++|+|++||+++|+.|++++++|.++ |+|||+.+.+.+ ..++++|||++||+|+++|+++++|+||||+++.
T Consensus 132 ~~P~~Vv~P~s~eeV~~ivk~a~~~~ipv~pr-GgGts~~G~~~~-~~ggivIdl~~mn~I~~id~~~~~vtVeaGv~~~ 209 (555)
T PLN02805 132 NIPDVVVFPRSEEEVSKIVKSCNKYKVPIVPY-GGATSIEGHTLA-PHGGVCIDMSLMKSVKALHVEDMDVVVEPGIGWL 209 (555)
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHCCCcEEEE-CCCCCCCCCccC-CCCEEEEEccCCCCeEEEeCCCCEEEEeCCcCHH
Confidence 46999999999999999999999999999998 899998887654 3468999999999999999999999999999999
Q ss_pred HHHHHHHHCCCcccccccccccchhhhhccCCcCCCccCCCCchhcceeEEEEEeeCCCCCCcccEEEcCC-------Cc
Q 009304 88 QIIGESAKAGLALPYTPYWWGLTIGGLIGTGAHGSSLWGRGSSIHDYVVELRIVSSGGPDDGYAKVRVLNE-------ND 160 (538)
Q Consensus 88 ~L~~~l~~~Gl~l~~~~~~~~~tvGG~i~tg~hGs~~~~~~G~~~d~V~~l~vV~~~G~~~g~~~v~~~~~-------~~ 160 (538)
+|.++|.++|+.+|..|+ +.+||||+++||+||+... +||.++|+|++++||+++|+ +++... +.
T Consensus 210 ~L~~~L~~~Gl~~p~~p~-~~~TIGG~ia~n~~G~~s~-~yG~~~d~V~~levVl~dG~------iv~~~~~~~k~~~g~ 281 (555)
T PLN02805 210 ELNEYLEPYGLFFPLDPG-PGATIGGMCATRCSGSLAV-RYGTMRDNVISLKVVLPNGD------VVKTASRARKSAAGY 281 (555)
T ss_pred HHHHHHHHcCCEeCCCCc-cccChhhHhhCCCcccccC-ccccHHHhEEEEEEEcCCce------EEEecCccccCCCCc
Confidence 999999999999999987 5689999999999998765 68999999999999999998 665421 23
Q ss_pred cchhhhhcCCCCeEEEEEEEEEeEecCceeE-EEEecC-chhHHHHHhhhc
Q 009304 161 QDLDAAKVSLGVLGVISQVTLKLQPLFKRSI-TFLMKN-DSELGDEAGSFG 209 (538)
Q Consensus 161 ~~f~a~~~s~G~lGVIt~vtl~l~p~~~~~~-~~~~~~-~~~~~~~~~~~~ 209 (538)
++|++++||+|+|||||++||++.|.+.... ....++ .++..+.+.++.
T Consensus 282 dL~~l~~GseGtLGIIT~~tlrl~p~P~~~~~~~~~f~~~~~a~~av~~i~ 332 (555)
T PLN02805 282 DLTRLVIGSEGTLGVITEVTLRLQKIPQHSVVAMCNFPTIKDAADVAIATM 332 (555)
T ss_pred cHHHHhccCCCceEEEEEEEEEeecCCcceEEEEEEcCCHHHHHHHHHHHH
Confidence 4589999999999999999999999988433 232333 455555555544
No 12
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=100.00 E-value=1.6e-32 Score=297.05 Aligned_cols=196 Identities=18% Similarity=0.221 Sum_probs=164.7
Q ss_pred CCCCCcCEEEeCCCHHHHHHHHHHHHHcCCceEEEeCCCCCCCCCCccCCCCcEEEEcCCCCCeeEEeCCCCEEEEeCCC
Q 009304 5 RSACKAADVAYPTSEQEIISVVSAATIAKRKMKVATRFSHSIPKLVCPDGQDGLLISTKYLNKIINIDTEAMTITMESGV 84 (538)
Q Consensus 5 ~~~~~p~~v~~P~s~~el~~~v~~a~~~~~~v~v~~ggghS~~~~~~~~~~~gv~Idl~~ln~v~~vd~~~~~vtv~aGv 84 (538)
.....|.+|++|+|++||+++|+.|++++++|.++ |+||+.++.+.+. .+|++|||++||+|+++|+++++|+||||+
T Consensus 51 ~~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~r-G~Gt~~~gg~~~~-~~gividl~~ln~I~~id~~~~~v~VeaGv 128 (499)
T PRK11230 51 AYRTRPLLVVLPKQMEQVQALLAVCHRLRVPVVAR-GAGTGLSGGALPL-EKGVLLVMARFNRILDINPVGRRARVQPGV 128 (499)
T ss_pred ccCCCCCEEEeeCCHHHHHHHHHHHHHcCCeEEEE-CCCcCcCCCcccC-CCcEEEEcccCCCceEEcCCCCEEEEcCCc
Confidence 34668999999999999999999999999999887 8888887766552 458999999999999999999999999999
Q ss_pred CHHHHHHHHHHCCCcccccccc-cccchhhhhccCCcCCCccCCCCchhcceeEEEEEeeCCCCCCcccEEEcCCC----
Q 009304 85 TLRQIIGESAKAGLALPYTPYW-WGLTIGGLIGTGAHGSSLWGRGSSIHDYVVELRIVSSGGPDDGYAKVRVLNEN---- 159 (538)
Q Consensus 85 ~l~~L~~~l~~~Gl~l~~~~~~-~~~tvGG~i~tg~hGs~~~~~~G~~~d~V~~l~vV~~~G~~~g~~~v~~~~~~---- 159 (538)
++.+|.++|.++|+.++..|.. ...||||++++|++|.... +||...|+|++++||+++|+ +++++..
T Consensus 129 ~~~~L~~~l~~~Gl~~~~~p~s~~~~tvGG~ia~nagG~~~~-~yG~~~d~v~~levVl~~G~------i~~~~~~~~~~ 201 (499)
T PRK11230 129 RNLAISQAAAPHGLYYAPDPSSQIACSIGGNVAENAGGVHCL-KYGLTVHNLLKVEILTLDGE------ALTLGSDALDS 201 (499)
T ss_pred cHHHHHHHHHHcCCeeCCCCCccccceEcceeccCCCCccce-eeCChhhheeEEEEEcCCCc------EEEeCCccCCC
Confidence 9999999999999998877754 4589999999999998775 68999999999999999999 7776531
Q ss_pred -cc-chhhhhcCCCCeEEEEEEEEEeEecCceeEE--EEecCchhHHHHHhhhc
Q 009304 160 -DQ-DLDAAKVSLGVLGVISQVTLKLQPLFKRSIT--FLMKNDSELGDEAGSFG 209 (538)
Q Consensus 160 -~~-~f~a~~~s~G~lGVIt~vtl~l~p~~~~~~~--~~~~~~~~~~~~~~~~~ 209 (538)
.+ ++++++||+|+|||||++|||+.|.++.... +.+.+.++..+.+.++.
T Consensus 202 ~g~dl~~l~~Gs~GtlGIIt~atlkl~p~p~~~~~~~~~f~~~~~a~~~~~~~~ 255 (499)
T PRK11230 202 PGFDLLALFTGSEGMLGVVTEVTVKLLPKPPVARVLLASFDSVEKAGLAVGDII 255 (499)
T ss_pred CccchHhhhccCCCccEEEEEEEEEEEcCCcceEEEEEECCCHHHHHHHHHHHH
Confidence 33 4778899999999999999999999985433 23334445555554443
No 13
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=100.00 E-value=1.9e-31 Score=283.83 Aligned_cols=189 Identities=21% Similarity=0.269 Sum_probs=159.2
Q ss_pred EEeCCCHHHHHHHHHHHHHcCCceEEEeCCCCCCCCCCccCCCCcEEEEcCCCCCeeEEeCCCCEEEEeCCCCHHHHHHH
Q 009304 13 VAYPTSEQEIISVVSAATIAKRKMKVATRFSHSIPKLVCPDGQDGLLISTKYLNKIINIDTEAMTITMESGVTLRQIIGE 92 (538)
Q Consensus 13 v~~P~s~~el~~~v~~a~~~~~~v~v~~ggghS~~~~~~~~~~~gv~Idl~~ln~v~~vd~~~~~vtv~aGv~l~~L~~~ 92 (538)
|++|+|++||+++|+.|++++++|.++ |+||++.+.+.+. +++++|||++||+|+++|+++++|+||||+++.+|.++
T Consensus 1 Vv~P~s~eev~~iv~~a~~~~i~v~~~-G~Gt~~~g~~~~~-~~~vvidl~~mn~i~~id~~~~~v~veaGv~~~~l~~~ 78 (413)
T TIGR00387 1 VVFPKNTEQVARILKLCHEHRIPIVPR-GAGTGLSGGALPE-EGGLVLVFKHMNKILEIDVVNLTAVVQPGVRNLELEQA 78 (413)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCcEEEE-CCCCCCCCCccCC-CCeEEEEhHHcCceeEEcCCCCEEEEcCCccHHHHHHH
Confidence 578999999999999999999999998 8899987776653 46899999999999999999999999999999999999
Q ss_pred HHHCCCcccccccc-cccchhhhhccCCcCCCccCCCCchhcceeEEEEEeeCCCCCCcccEEEcCC-------Cccchh
Q 009304 93 SAKAGLALPYTPYW-WGLTIGGLIGTGAHGSSLWGRGSSIHDYVVELRIVSSGGPDDGYAKVRVLNE-------NDQDLD 164 (538)
Q Consensus 93 l~~~Gl~l~~~~~~-~~~tvGG~i~tg~hGs~~~~~~G~~~d~V~~l~vV~~~G~~~g~~~v~~~~~-------~~~~f~ 164 (538)
|.++|+.+|..|.. ...||||+++||++|.... +||.++|+|+++++|+++|+ +++++. +.++++
T Consensus 79 l~~~gl~~~~~p~s~~~~tiGG~ia~na~G~~~~-~yG~~~d~v~~l~vV~~~G~------~~~~~~~~~~~~~g~dl~~ 151 (413)
T TIGR00387 79 VEEHNLFYPPDPSSQISSTIGGNIAENAGGMRGL-KYGTTVDYVLGLEVVTADGE------ILRIGGKTAKDVAGYDLTG 151 (413)
T ss_pred HHHcCCeeCCCCcccccceehhhhhcCCCCCcce-eeccHHhheeeEEEEeCCCC------EEEeCCcccCCCCCCChhh
Confidence 99999999987764 4589999999999997766 58999999999999999998 666542 123466
Q ss_pred hhhcCCCCeEEEEEEEEEeEecCcee--EEEEecCchhHHHHHhhhcc
Q 009304 165 AAKVSLGVLGVISQVTLKLQPLFKRS--ITFLMKNDSELGDEAGSFGH 210 (538)
Q Consensus 165 a~~~s~G~lGVIt~vtl~l~p~~~~~--~~~~~~~~~~~~~~~~~~~~ 210 (538)
...+|.|+|||||++|||+.|.++.. ..+.+.+.++..+.+.++.+
T Consensus 152 l~~Gs~GtlGiit~~~lkl~p~p~~~~~~~~~f~~~~~~~~~~~~~~~ 199 (413)
T TIGR00387 152 LFVGSEGTLGIVTEATLKLLPKPENIVVALAFFDSIEKAMQAVYDIIA 199 (413)
T ss_pred hcccCCccceEEEEEEEEeecCCCccEEEEEECCCHHHHHHHHHHHHh
Confidence 77889999999999999999999853 33334445555555555443
No 14
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional
Probab=99.96 E-value=6e-29 Score=256.54 Aligned_cols=181 Identities=22% Similarity=0.338 Sum_probs=152.7
Q ss_pred CHHHHHHHHHHHHHcCCceEEEeCCC-CCCCCCCccCCCCcEEEEcCCCCCeeEEeCCCCEEEEeCCCCHHHHHHHHHHC
Q 009304 18 SEQEIISVVSAATIAKRKMKVATRFS-HSIPKLVCPDGQDGLLISTKYLNKIINIDTEAMTITMESGVTLRQIIGESAKA 96 (538)
Q Consensus 18 s~~el~~~v~~a~~~~~~v~v~~ggg-hS~~~~~~~~~~~gv~Idl~~ln~v~~vd~~~~~vtv~aGv~l~~L~~~l~~~ 96 (538)
.++||+++|+.|++++.+|+++ |+| |++.+.. . ++++|||++||+|+++|+++++|||+||+++.+|.++|+++
T Consensus 3 ~~~ev~~~v~~A~~~~~~v~~~-GgGt~~~~g~~-~---~~~vldl~~ln~Ile~d~~~~~vtV~AG~~l~el~~~L~~~ 77 (352)
T PRK11282 3 ISAALLERVRQAAADGTPLRIR-GGGSKDFYGRA-L---AGEVLDTRAHRGIVSYDPTELVITARAGTPLAELEAALAEA 77 (352)
T ss_pred hHHHHHHHHHHHHHCCCeEEEE-CCCCCCCCCCC-C---CCeEEEcccCCCcEEEcCCCCEEEECCCCCHHHHHHHHHHc
Confidence 4799999999999999999999 566 5665552 2 36799999999999999999999999999999999999999
Q ss_pred CCccccccc-cc-ccchhhhhccCCcCCCccCCCCchhcceeEEEEEeeCCCCCCcccEEEcCC-------Cccchhhhh
Q 009304 97 GLALPYTPY-WW-GLTIGGLIGTGAHGSSLWGRGSSIHDYVVELRIVSSGGPDDGYAKVRVLNE-------NDQDLDAAK 167 (538)
Q Consensus 97 Gl~l~~~~~-~~-~~tvGG~i~tg~hGs~~~~~~G~~~d~V~~l~vV~~~G~~~g~~~v~~~~~-------~~~~f~a~~ 167 (538)
|+.+|..|. +. .+||||+++||+||+... +||.++|+|+++++|+++|+ +++++. +.++|++++
T Consensus 78 G~~lp~~p~~~~~~~TIGG~iatg~~G~~~~-~yG~~~D~Vlg~~vV~~~Ge------i~~~gg~v~kn~~G~DL~~l~~ 150 (352)
T PRK11282 78 GQMLPFEPPHFGGGATLGGMVAAGLSGPRRP-WAGAVRDFVLGTRLINGRGE------HLRFGGQVMKNVAGYDVSRLMA 150 (352)
T ss_pred CCeeCCCCCCcCCCcEehhHHhcCCCCcccc-ccCCHHHhEeeEEEEcCCce------EEEeCCcccCCCCCchHHHHHh
Confidence 999998653 44 489999999999999886 68999999999999999999 666542 234599999
Q ss_pred cCCCCeEEEEEEEEEeEecCceeEEEE-ecCchhHHHHHhhhcc
Q 009304 168 VSLGVLGVISQVTLKLQPLFKRSITFL-MKNDSELGDEAGSFGH 210 (538)
Q Consensus 168 ~s~G~lGVIt~vtl~l~p~~~~~~~~~-~~~~~~~~~~~~~~~~ 210 (538)
||+|+|||||++|||+.|.+....++. ..++.+..+.+.++..
T Consensus 151 Gs~GtLGVitevtlkl~P~p~~~~t~~~~~~~~~a~~~~~~~~~ 194 (352)
T PRK11282 151 GSLGTLGVLLEVSLKVLPRPRAELTLRLEMDAAEALRKLNEWGG 194 (352)
T ss_pred hCCchhhhheEEEEEEEecCceEEEEEEecCHHHHHHHHHHHhc
Confidence 999999999999999999998665533 3345666666666654
No 15
>KOG1231 consensus Proteins containing the FAD binding domain [Energy production and conversion]
Probab=99.96 E-value=2.9e-27 Score=240.34 Aligned_cols=176 Identities=17% Similarity=0.291 Sum_probs=150.0
Q ss_pred CCCCCcCEEEeCCCHHHHHHHHHHHHHc--CCceEEEeCCCCCCCCCCccCCCCcEEE--EcC-CCCCeeEEeCCCCEEE
Q 009304 5 RSACKAADVAYPTSEQEIISVVSAATIA--KRKMKVATRFSHSIPKLVCPDGQDGLLI--STK-YLNKIINIDTEAMTIT 79 (538)
Q Consensus 5 ~~~~~p~~v~~P~s~~el~~~v~~a~~~--~~~v~v~~ggghS~~~~~~~~~~~gv~I--dl~-~ln~v~~vd~~~~~vt 79 (538)
+..-.|.+|..|+|++||.++++.|+.. ..+|.+. |+|||..+++.+ ..+|++| +++ .++++..++.++..|.
T Consensus 59 ~~~~~P~aVL~P~S~edVs~ilk~~~~~~s~~pVaar-G~GhSl~Gqa~a-~~~GvvV~m~~~~~~~~~~~~~~~~~yvd 136 (505)
T KOG1231|consen 59 RTQLPPLAVLFPSSVEDVSKILKHCNDYGSNFPVAAR-GGGHSLEGQALA-TRGGVVVCMDSSLLMKDVPVLVVDDLYVD 136 (505)
T ss_pred cCCCCCeeEEcCCCHHHHHHHHHHHhccCCcceeecc-CCcccccCcccc-CCCCeEEEEehhhccCCCceeecccceEE
Confidence 3455799999999999999999999999 5555555 789999999876 3567655 443 4677777888889999
Q ss_pred EeCCCCHHHHHHHHHHCCCcccccccccccchhhhhccCCcCCCccCCCCchhcceeEEEEEeeCCCCCCcccEEEcCCC
Q 009304 80 MESGVTLRQIIGESAKAGLALPYTPYWWGLTIGGLIGTGAHGSSLWGRGSSIHDYVVELRIVSSGGPDDGYAKVRVLNEN 159 (538)
Q Consensus 80 v~aGv~l~~L~~~l~~~Gl~l~~~~~~~~~tvGG~i~tg~hGs~~~~~~G~~~d~V~~l~vV~~~G~~~g~~~v~~~~~~ 159 (538)
|+||..|-+|.+++.++||+.-...++..+||||.+|+++.|+..+ +||...++|.+|+||+++|+ +++++..
T Consensus 137 V~~g~~Widll~~t~e~GL~p~swtDyl~ltVGGtlsnagiggqaf-RyGpqi~NV~~LdVVtgkGe------iv~cs~r 209 (505)
T KOG1231|consen 137 VSAGTLWIDLLDYTLEYGLSPFSWTDYLPLTVGGTLSNAGIGGQAF-RYGPQISNVIELDVVTGKGE------IVTCSKR 209 (505)
T ss_pred eeCChhHHHHHHHHHHcCCCccCcCCccceeecceeccCcccccee-eccchhhceEEEEEEcCCCc------EEecccc
Confidence 9999999999999999999644444444499999999999999888 68999999999999999999 9988873
Q ss_pred --ccchhhhhcCCCCeEEEEEEEEEeEecCce
Q 009304 160 --DQDLDAAKVSLGVLGVISQVTLKLQPLFKR 189 (538)
Q Consensus 160 --~~~f~a~~~s~G~lGVIt~vtl~l~p~~~~ 189 (538)
..+|..+.||+|.|||||++|++|+|+|++
T Consensus 210 ~n~~lf~~vlGglGqfGIITrArI~le~aP~~ 241 (505)
T KOG1231|consen 210 ANSNLFFLVLGGLGQFGIITRARIKLEPAPKR 241 (505)
T ss_pred cCceeeeeeeccCcceeeEEEEEEEeccCCcc
Confidence 446999999999999999999999999976
No 16
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. One of the enzymes Vanillyl-alcohol oxidase (VAO, 1.1.3.38 from EC) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110 []. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyses the oxidation of a wide variety of substrates, ranging from aromatic amines to 4-alkylphenols. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZR6_A 3HSU_A 2AXR_A 3D2J_A 3D2H_A 3FW9_A 3FW8_A 3FW7_A 3GSY_A 3FWA_A ....
Probab=99.93 E-value=2.3e-25 Score=201.73 Aligned_cols=138 Identities=32% Similarity=0.388 Sum_probs=124.8
Q ss_pred cCEEEeCCCHHHHHHHHHHHHHcCCceEEEeCCCCCCCCCCccCCCCcEEEEcCCCCCeeEEeCCCCEEEEeCCCCHHHH
Q 009304 10 AADVAYPTSEQEIISVVSAATIAKRKMKVATRFSHSIPKLVCPDGQDGLLISTKYLNKIINIDTEAMTITMESGVTLRQI 89 (538)
Q Consensus 10 p~~v~~P~s~~el~~~v~~a~~~~~~v~v~~ggghS~~~~~~~~~~~gv~Idl~~ln~v~~vd~~~~~vtv~aGv~l~~L 89 (538)
|.+|++|+|++||+++|++|++++.+++++ ++||++.+.+. ..++++|||++||+|+++|++.++++|+||+++.||
T Consensus 1 P~~vv~P~s~~ev~~~v~~a~~~~~~v~~~-g~G~~~~~~~~--~~~~ivi~~~~l~~i~~id~~~~~v~v~aG~~~~~l 77 (139)
T PF01565_consen 1 PAAVVRPKSVEEVQAIVKFANENGVPVRVR-GGGHSWTGQSS--DEGGIVIDMSRLNKIIEIDPENGTVTVGAGVTWGDL 77 (139)
T ss_dssp ESEEEEESSHHHHHHHHHHHHHTTSEEEEE-SSSTTSSSTTS--STTEEEEECTTCGCEEEEETTTTEEEEETTSBHHHH
T ss_pred CcEEEEeCCHHHHHHHHHHHHHcCCcEEEE-cCCCCcccccc--cCCcEEEeeccccccccccccceeEEEeccccchhc
Confidence 789999999999999999999999999999 89999886664 346999999999999999999999999999999999
Q ss_pred HHHHHHCCCcccccc-cccccchhhhhccCCcCCCccCCCCchhcceeEEEEEeeCCCCCCcccEEEcC
Q 009304 90 IGESAKAGLALPYTP-YWWGLTIGGLIGTGAHGSSLWGRGSSIHDYVVELRIVSSGGPDDGYAKVRVLN 157 (538)
Q Consensus 90 ~~~l~~~Gl~l~~~~-~~~~~tvGG~i~tg~hGs~~~~~~G~~~d~V~~l~vV~~~G~~~g~~~v~~~~ 157 (538)
.++|.++|+.++..+ .....||||++++|+||+... .+|.++|+|+++++|+++|+ +++++
T Consensus 78 ~~~l~~~g~~~~~~~~~~~~~tvGG~i~~~~~g~~~~-~~G~~~d~v~~~~~V~~~G~------v~~~s 139 (139)
T PF01565_consen 78 YEALAPRGLMLPVEPGSGIPGTVGGAIAGNGHGSGSR-RYGTAADNVLSVEVVLADGE------VVRCS 139 (139)
T ss_dssp HHHHHHHTEEESSGGGSTTTSBHHHHHHTT-EETTHH-HHCBGGGGEEEEEEEETTSS------EEEEE
T ss_pred ccccccccccccccccccccceEchhhcCCCcccccc-ccccHHHeEEEEEEEcCCCc------EEEeC
Confidence 999999999998654 445689999999999998876 57999999999999999999 87764
No 17
>KOG1233 consensus Alkyl-dihydroxyacetonephosphate synthase [General function prediction only]
Probab=99.93 E-value=1.5e-24 Score=215.71 Aligned_cols=205 Identities=23% Similarity=0.279 Sum_probs=168.3
Q ss_pred CCCCCCCCcCEEEeCCCHHHHHHHHHHHHHcCCceEEEeCCCCC-CCCCCccCCCCcE--EEEcCCCCCeeEEeCCCCEE
Q 009304 2 FPDRSACKAADVAYPTSEQEIISVVSAATIAKRKMKVATRFSHS-IPKLVCPDGQDGL--LISTKYLNKIINIDTEAMTI 78 (538)
Q Consensus 2 W~~~~~~~p~~v~~P~s~~el~~~v~~a~~~~~~v~v~~ggghS-~~~~~~~~~~~gv--~Idl~~ln~v~~vd~~~~~v 78 (538)
|-+.....|..|+.|+..+||+++|+.|.+++.-+.++ |||-| ..++.||....-. .+||+.||+|+.+|.++.|+
T Consensus 153 regkf~RiPDiVvWP~chdevVkiv~lA~khN~~iiPi-GGGTSVs~al~cP~~E~R~iislDtsqmnriLWidreNLT~ 231 (613)
T KOG1233|consen 153 REGKFPRIPDIVVWPKCHDEVVKIVELAMKHNCAIIPI-GGGTSVSNALDCPETEKRAIISLDTSQMNRILWIDRENLTC 231 (613)
T ss_pred hcCccCCCCceEecccchHHHHHHHHHHhhcCeEEEEe-CCcccccccccCCcccceeEEEecHHhhhheeEeccccceE
Confidence 56778889999999999999999999999999888887 77777 4577888655444 46788899999999999999
Q ss_pred EEeCCCCHHHHHHHHHHCCCccccccccc-ccchhhhhccCCcCCCccCCCCchhcceeEEEEEeeCCCCCCcccEEEcC
Q 009304 79 TMESGVTLRQIIGESAKAGLALPYTPYWW-GLTIGGLIGTGAHGSSLWGRGSSIHDYVVELRIVSSGGPDDGYAKVRVLN 157 (538)
Q Consensus 79 tv~aGv~l~~L~~~l~~~Gl~l~~~~~~~-~~tvGG~i~tg~hGs~~~~~~G~~~d~V~~l~vV~~~G~~~g~~~v~~~~ 157 (538)
.+|+|++-.+|.+.|.+.|+...+-|+.- -.|+||+++|.+.|.-.. +||.+-|.|+.+++|+|.|..+-..++.+.+
T Consensus 232 ~~eaGIvGQ~LERqL~~~G~t~GHEPDS~EFSTlGGWVsTRASGMKKN-~YGNIEDLVVh~~mVtP~Giiek~Cq~PRmS 310 (613)
T KOG1233|consen 232 RAEAGIVGQSLERQLNKKGFTCGHEPDSIEFSTLGGWVSTRASGMKKN-KYGNIEDLVVHLNMVTPKGIIEKQCQVPRMS 310 (613)
T ss_pred EEecCcchHHHHHHHhhcCcccCCCCCceeeecccceeeecccccccc-ccCChhHheEEEEeecCcchhhhhhcCCccc
Confidence 99999999999999999999999998754 479999999999998776 7999999999999999999744333444444
Q ss_pred CCccchhhh-hcCCCCeEEEEEEEEEeEecCcee--EEEEecCchhHHHHHhhhc
Q 009304 158 ENDQDLDAA-KVSLGVLGVISQVTLKLQPLFKRS--ITFLMKNDSELGDEAGSFG 209 (538)
Q Consensus 158 ~~~~~f~a~-~~s~G~lGVIt~vtl~l~p~~~~~--~~~~~~~~~~~~~~~~~~~ 209 (538)
. .||++.+ .||.|+|||||++|+++.|.|... -.+.+-++++-..-+.+.+
T Consensus 311 ~-GPDihh~IlGSEGTLGVitEvtiKirPiPe~~ryGS~aFPNFEqGV~f~REvA 364 (613)
T KOG1233|consen 311 S-GPDIHHIILGSEGTLGVITEVTIKIRPIPEVKRYGSFAFPNFEQGVNFFREVA 364 (613)
T ss_pred C-CCCcceEEeccCcceeEEEEEEEEEeechhhhhcCccccCcHHHHHHHHHHHH
Confidence 3 4788776 789999999999999999998843 3444555555444444443
No 18
>PRK11183 D-lactate dehydrogenase; Provisional
Probab=99.91 E-value=1.7e-23 Score=221.70 Aligned_cols=198 Identities=21% Similarity=0.233 Sum_probs=154.5
Q ss_pred CCCcCEEEeCCCHHHHHHHHHHHHHcCCceEEEeCCCCCCCCCCccCCC----CcEEEEcCCCCCeeEEeCCCCEEEEeC
Q 009304 7 ACKAADVAYPTSEQEIISVVSAATIAKRKMKVATRFSHSIPKLVCPDGQ----DGLLISTKYLNKIINIDTEAMTITMES 82 (538)
Q Consensus 7 ~~~p~~v~~P~s~~el~~~v~~a~~~~~~v~v~~ggghS~~~~~~~~~~----~gv~Idl~~ln~v~~vd~~~~~vtv~a 82 (538)
...|.+|++|.|++||+++|+.|++++++|.+. |+|-+.++.+.|... ++|+|||++||+|++|| ++++|+|||
T Consensus 36 ~g~P~AVV~P~SteEVa~IVklC~e~~vPVIPR-GgGTGLtGGAvP~~~~~dR~gVVIsl~RMNrIleID-~~~~VvVeP 113 (564)
T PRK11183 36 QGDALAVVFPGTLLELWRVLQACVAADKIIIMQ-AANTGLTGGSTPNGNDYDRDIVIISTLRLDKIQLLN-NGKQVLALP 113 (564)
T ss_pred CCCCCEEEecCCHHHHHHHHHHHHHcCCeEEEe-CCCcccccCcccCCCCCcCCEEEEEhhHcCCcEEEC-CCCeEEEeC
Confidence 457999999999999999999999999888665 555557787777433 37999999999999999 567999999
Q ss_pred CCCHHHHHHHHHHCCCccccccccc--ccchhhhhccCCcCCCccCCCCchhcceeEEEEEeeCCCC-------------
Q 009304 83 GVTLRQIIGESAKAGLALPYTPYWW--GLTIGGLIGTGAHGSSLWGRGSSIHDYVVELRIVSSGGPD------------- 147 (538)
Q Consensus 83 Gv~l~~L~~~l~~~Gl~l~~~~~~~--~~tvGG~i~tg~hGs~~~~~~G~~~d~V~~l~vV~~~G~~------------- 147 (538)
|+++.+|.++|+++|+.++..++.. +.||||.|+||+.|+... +||.+.++|+. ++|+++|++
T Consensus 114 GVtl~~LeeaLk~~Gl~p~sd~GSS~IGasIGGnIAtNAGG~~vl-Rgga~te~vL~-~~V~~dGel~lVn~lgi~lG~~ 191 (564)
T PRK11183 114 GTTLYQLEKALKPLGREPHSVIGSSCIGASVIGGICNNSGGALVQ-RGPAYTEMALY-AQIDEDGKLELVNHLGIDLGET 191 (564)
T ss_pred CCcHHHHHHHHHHhCCCCCCcccccccCCCCccceEECCcchhhe-Ecchhhhhhhh-hEECCCCcEEEeeccCcccCCC
Confidence 9999999999999999877765333 569999999999999877 79999999999 999999994
Q ss_pred ----------CCc------------------ccEEEcCCCc-----cc-hhh--hhcCCCCeEEEEEEEEEeEecCce-e
Q 009304 148 ----------DGY------------------AKVRVLNEND-----QD-LDA--AKVSLGVLGVISQVTLKLQPLFKR-S 190 (538)
Q Consensus 148 ----------~g~------------------~~v~~~~~~~-----~~-f~a--~~~s~G~lGVIt~vtl~l~p~~~~-~ 190 (538)
.|| ..|+.++.+. .| .+. +.||.|.|||| +|+|++.|.++. .
T Consensus 192 ~e~il~~l~~~gy~~~~~~~~~~~~~d~~y~~~vr~v~~~~parfnaDl~~LfeasGseGkLgV~-avrLdtfp~p~~~~ 270 (564)
T PRK11183 192 PEEILTRLEDGRFDDEDVRHDGRHASDHEYAERVRDVDADTPARFNADPRRLFEASGCAGKLAVF-AVRLDTFPAEKNTQ 270 (564)
T ss_pred HHHHHHhhhcCCCCccccCCccccCchhhHHHhhhccCCCCcccccCCHHHHhhccCCCceEEEE-EEEeccccCCCcce
Confidence 022 0112222211 12 222 37899999999 999999999885 4
Q ss_pred EEEEecCchhHHHHHhhhc
Q 009304 191 ITFLMKNDSELGDEAGSFG 209 (538)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~ 209 (538)
+.+...++.+.+..+...+
T Consensus 271 vf~ig~n~~~~~~~~rr~i 289 (564)
T PRK11183 271 VFYIGTNDPAVLTEIRRHI 289 (564)
T ss_pred EEEEeCCCHHHHHHHHHHH
Confidence 5566666655555444433
No 19
>KOG1232 consensus Proteins containing the FAD binding domain [Energy production and conversion]
Probab=99.89 E-value=2.7e-23 Score=206.67 Aligned_cols=191 Identities=24% Similarity=0.270 Sum_probs=158.4
Q ss_pred CCCCCCCCcCEEEeCCCHHHHHHHHHHHHHcCCceEEEeCCCCC-CCCCCccCCCCcEEEEcCCCCCeeEEeCCCCEEEE
Q 009304 2 FPDRSACKAADVAYPTSEQEIISVVSAATIAKRKMKVATRFSHS-IPKLVCPDGQDGLLISTKYLNKIINIDTEAMTITM 80 (538)
Q Consensus 2 W~~~~~~~p~~v~~P~s~~el~~~v~~a~~~~~~v~v~~ggghS-~~~~~~~~~~~gv~Idl~~ln~v~~vd~~~~~vtv 80 (538)
|-+...+....+.+|.|.+||.+|+++|++. |+.|++.||++ ..+.+.| .-+.++|+|..||+|+++|+-.+++++
T Consensus 82 wm~kyrG~sklvL~Pkst~eVS~ILkYCn~~--kLAVVPQGGNTgLVGgSVP-vfDEiVlsl~~mNKi~sfDevsGil~c 158 (511)
T KOG1232|consen 82 WMKKYRGQSKLVLKPKSTEEVSAILKYCNDR--KLAVVPQGGNTGLVGGSVP-VFDEIVLSLGLMNKILSFDEVSGILKC 158 (511)
T ss_pred HHHhccCCceEEecCCCHHHHHHHHHhhccc--cEEEecCCCCcccccCccc-chHHHhhhhhhhccccccccccceEEe
Confidence 6677788889999999999999999999875 57889999997 4555555 456899999999999999999999999
Q ss_pred eCCCCHHHHHHHHHHCCCcccccccc-cccchhhhhccCCcCCCccCCCCchhcceeEEEEEeeCCCC-CCcccEEEcCC
Q 009304 81 ESGVTLRQIIGESAKAGLALPYTPYW-WGLTIGGLIGTGAHGSSLWGRGSSIHDYVVELRIVSSGGPD-DGYAKVRVLNE 158 (538)
Q Consensus 81 ~aGv~l~~L~~~l~~~Gl~l~~~~~~-~~~tvGG~i~tg~hGs~~~~~~G~~~d~V~~l~vV~~~G~~-~g~~~v~~~~~ 158 (538)
+||+.++++..+|++.|+.+|...+. ..+.|||.++|+++|-... +||++|.+|+++++|+|+|++ +-...+++-+.
T Consensus 159 daG~ILen~d~~l~e~g~m~PlDLgAKgsCqiGG~vsTnAGGlrll-RYGsLHgsvLGle~Vlp~G~vl~~~~slRKDNT 237 (511)
T KOG1232|consen 159 DAGVILENADNFLAEKGYMFPLDLGAKGSCQIGGNVSTNAGGLRLL-RYGSLHGSVLGLEVVLPNGTVLDLLSSLRKDNT 237 (511)
T ss_pred ccceEehhhHHHHHhcCceeeecCCCcccceecceeeccCCceEEE-EecccccceeeeEEEcCCCchhhhhhhhcccCc
Confidence 99999999999999999999988665 4489999999999999988 599999999999999999991 22222222222
Q ss_pred CccchhhhhcCCCCeEEEEEEEEEeEecCce-eEEEEec
Q 009304 159 NDQDLDAAKVSLGVLGVISQVTLKLQPLFKR-SITFLMK 196 (538)
Q Consensus 159 ~~~~f~a~~~s~G~lGVIt~vtl~l~p~~~~-~~~~~~~ 196 (538)
+.+.=+..+||.|.|||||.+++-+.|.++. .+.|...
T Consensus 238 gydlkhLFIGSEGtlGVvT~vSil~~~kpksvn~af~gi 276 (511)
T KOG1232|consen 238 GYDLKHLFIGSEGTLGVVTKVSILAPPKPKSVNVAFIGI 276 (511)
T ss_pred cccchhheecCCceeeEEeeEEEeecCCCcceeEEEEcc
Confidence 3222344589999999999999999999883 4555544
No 20
>PRK13905 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.86 E-value=3.8e-21 Score=195.93 Aligned_cols=164 Identities=21% Similarity=0.238 Sum_probs=134.9
Q ss_pred CCCCCcCEEEeCCCHHHHHHHHHHHHHcCCceEEEeCCCCCCCCCCccCCCCcEEEEcCC-CCCeeEEeCCCCEEEEeCC
Q 009304 5 RSACKAADVAYPTSEQEIISVVSAATIAKRKMKVATRFSHSIPKLVCPDGQDGLLISTKY-LNKIINIDTEAMTITMESG 83 (538)
Q Consensus 5 ~~~~~p~~v~~P~s~~el~~~v~~a~~~~~~v~v~~ggghS~~~~~~~~~~~gv~Idl~~-ln~v~~vd~~~~~vtv~aG 83 (538)
++.+.|..++.|+|++||+++++.|+++++++.++ |+||+.. ....+-+|++|+|++ |+++ +.++.+|+|+||
T Consensus 26 ~igg~a~~vv~P~s~edv~~~v~~a~~~~~p~~v~-GgGsnll--~~d~g~~gvvI~l~~~l~~i---~~~~~~v~v~aG 99 (298)
T PRK13905 26 RVGGPADYLVEPADIEDLQEFLKLLKENNIPVTVL-GNGSNLL--VRDGGIRGVVIRLGKGLNEI---EVEGNRITAGAG 99 (298)
T ss_pred ecCceEeEEEeCCCHHHHHHHHHHHHHcCCCEEEE-eCCceEE--ecCCCcceEEEEecCCcceE---EecCCEEEEECC
Confidence 35577899999999999999999999999999999 7777632 111123489999999 9885 445679999999
Q ss_pred CCHHHHHHHHHHCCCc-ccccccccccchhhhhccCCcCCCccCCCCchhcceeEEEEEeeCCCCCCcccEEEcCCCccc
Q 009304 84 VTLRQIIGESAKAGLA-LPYTPYWWGLTIGGLIGTGAHGSSLWGRGSSIHDYVVELRIVSSGGPDDGYAKVRVLNENDQD 162 (538)
Q Consensus 84 v~l~~L~~~l~~~Gl~-l~~~~~~~~~tvGG~i~tg~hGs~~~~~~G~~~d~V~~l~vV~~~G~~~g~~~v~~~~~~~~~ 162 (538)
++|.+|.++|.++|+. +....++++ ||||++++|+++ +++.++|+|+++++|+++|+ +++++.+ +.
T Consensus 100 ~~~~~L~~~l~~~Gl~gle~~~gipG-TVGGai~~NaG~-----~G~~~~d~v~~v~vv~~~G~------~~~~~~~-e~ 166 (298)
T PRK13905 100 APLIKLARFAAEAGLSGLEFAAGIPG-TVGGAVFMNAGA-----YGGETADVLESVEVLDRDGE------IKTLSNE-EL 166 (298)
T ss_pred CcHHHHHHHHHHcCCCcchhccCCCc-chhHHHHHcCCc-----CceEhheeEEEEEEEeCCCC------EEEEEHH-Hc
Confidence 9999999999999984 566667665 999999998865 24589999999999999998 8887643 45
Q ss_pred hhhhhcCCCC--eEEEEEEEEEeEecC
Q 009304 163 LDAAKVSLGV--LGVISQVTLKLQPLF 187 (538)
Q Consensus 163 f~a~~~s~G~--lGVIt~vtl~l~p~~ 187 (538)
+++.+.+.+. +||||++||++.|..
T Consensus 167 ~~~yR~s~~~~~~gII~~~~l~l~~~~ 193 (298)
T PRK13905 167 GFGYRHSALQEEGLIVLSATFQLEPGD 193 (298)
T ss_pred CCcCccccCCCCCEEEEEEEEEEcCCC
Confidence 7788876554 799999999999974
No 21
>PRK14652 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.75 E-value=1.7e-17 Score=168.66 Aligned_cols=164 Identities=16% Similarity=0.190 Sum_probs=124.3
Q ss_pred CCCCCcCEEEeCCCHHHHHHHHHHHHHcCCceEEEeCCCCCCCCCCccCCCCcEEEEcCCCCCeeEEeCCCCEEEEeCCC
Q 009304 5 RSACKAADVAYPTSEQEIISVVSAATIAKRKMKVATRFSHSIPKLVCPDGQDGLLISTKYLNKIINIDTEAMTITMESGV 84 (538)
Q Consensus 5 ~~~~~p~~v~~P~s~~el~~~v~~a~~~~~~v~v~~ggghS~~~~~~~~~~~gv~Idl~~ln~v~~vd~~~~~vtv~aGv 84 (538)
++.+.|..++.|+|++||++++++|+++++++.++ |+||+.. ....+-.|++|+++++...+. .++.+++|+||+
T Consensus 31 ~igg~a~~~v~p~~~edl~~~v~~a~~~~ip~~vl-GgGSNll--v~d~g~~gvVI~l~~~~~~i~--~~~~~v~v~AG~ 105 (302)
T PRK14652 31 RVGGPADLLVRPADPDALSALLRAVRELGVPLSIL-GGGANTL--VADAGVRGVVLRLPQDFPGES--TDGGRLVLGAGA 105 (302)
T ss_pred ecCCcceEEEEcCCHHHHHHHHHHHHHCCCcEEEE-cCCccee--ecCCCEeeEEEEecCCcceEE--ecCCEEEEECCC
Confidence 45678999999999999999999999999999999 6666531 222222389999977422233 345699999999
Q ss_pred CHHHHHHHHHHCCCc-ccccccccccchhhhhccCCcCCCccCCCCchhcceeEEEEEeeCCCCCCcccEEEcCCCccch
Q 009304 85 TLRQIIGESAKAGLA-LPYTPYWWGLTIGGLIGTGAHGSSLWGRGSSIHDYVVELRIVSSGGPDDGYAKVRVLNENDQDL 163 (538)
Q Consensus 85 ~l~~L~~~l~~~Gl~-l~~~~~~~~~tvGG~i~tg~hGs~~~~~~G~~~d~V~~l~vV~~~G~~~g~~~v~~~~~~~~~f 163 (538)
.|.+|.+++.++||+ +....++++ ||||++.+|+.. ++|.++|.|.++++|+++|. . .++.+ +..
T Consensus 106 ~~~~L~~~~~~~GL~GlE~l~gIPG-TvGGav~mNaGa-----~ggei~d~v~~v~vv~~~G~------~-~~~~~-e~~ 171 (302)
T PRK14652 106 PISRLPARAHAHGLVGMEFLAGIPG-TLGGAVAMNAGT-----KLGEMKDVVTAVELATADGA------G-FVPAA-ALG 171 (302)
T ss_pred cHHHHHHHHHHcCCcccccccCCCc-chhHHHHHcCCC-----CceEhhheEEEEEEECCCCc------E-Eeehh-hcC
Confidence 999999999999997 445556665 999999999852 57899999999999999984 2 33332 233
Q ss_pred hhhhcC-CCCeEEEEEEEEEeEecC
Q 009304 164 DAAKVS-LGVLGVISQVTLKLQPLF 187 (538)
Q Consensus 164 ~a~~~s-~G~lGVIt~vtl~l~p~~ 187 (538)
++.+.+ ++.-||||++||++.|..
T Consensus 172 f~YR~s~~~~~~II~~a~~~L~~~~ 196 (302)
T PRK14652 172 YAYRTCRLPPGAVITRVEVRLRPGD 196 (302)
T ss_pred cccceeccCCCeEEEEEEEEEecCC
Confidence 344332 122389999999999954
No 22
>KOG1262 consensus FAD-binding protein DIMINUTO [General function prediction only]
Probab=99.75 E-value=3.6e-17 Score=163.73 Aligned_cols=390 Identities=18% Similarity=0.231 Sum_probs=231.1
Q ss_pred EEEEcCCCCCeeEEeCCCCEEEEeCCCCHHHHHHHHHHCCCcccccccccccchhhhhccCCcCCCccCCCCchhcceeE
Q 009304 58 LLISTKYLNKIINIDTEAMTITMESGVTLRQIIGESAKAGLALPYTPYWWGLTIGGLIGTGAHGSSLWGRGSSIHDYVVE 137 (538)
Q Consensus 58 v~Idl~~ln~v~~vd~~~~~vtv~aGv~l~~L~~~l~~~Gl~l~~~~~~~~~tvGG~i~tg~hGs~~~~~~G~~~d~V~~ 137 (538)
.-|++..|..|+++|.+++||+|||+|+++|+.++|.+.|++||+.|..+..|+||.|.+-+.-++++ ++|.+.+.+++
T Consensus 104 ~~v~id~l~dILeld~ekmtvrvEP~Vtmgqis~~lip~g~tLaV~~EldDlTvGGLinG~Gies~Sh-kyGlfq~~~~a 182 (543)
T KOG1262|consen 104 HQVPIDELHDILELDEEKMTVRVEPLVTMGQISKFLIPKGYTLAVLPELDDLTVGGLINGVGIESSSH-KYGLFQHICTA 182 (543)
T ss_pred ccCCHHHHhHHHhcchhcceEEecCCccHHHHHHHhccCCceeeeecccccceecceeeecccccccc-hhhhHHhhhhe
Confidence 45666677889999999999999999999999999999999999999999999999996655555555 79999999999
Q ss_pred EEEEeeCCCCCCcccEEEcCCC---ccchhhhhcCCCCeEEEEEEEEEeEecCc-eeEEEEecCc-hhHHHHHhhh---c
Q 009304 138 LRIVSSGGPDDGYAKVRVLNEN---DQDLDAAKVSLGVLGVISQVTLKLQPLFK-RSITFLMKND-SELGDEAGSF---G 209 (538)
Q Consensus 138 l~vV~~~G~~~g~~~v~~~~~~---~~~f~a~~~s~G~lGVIt~vtl~l~p~~~-~~~~~~~~~~-~~~~~~~~~~---~ 209 (538)
.|||++||+ +++++++ +++|.|+-.|.|+||..+.+|+++.|..+ ...+|..... ++..+.+.++ .
T Consensus 183 YEvVladGe------lv~~t~dne~sdLfyaiPWSqGTlgfLVaatiriIkvK~Yvkltyip~~~l~e~c~k~~e~~~ds 256 (543)
T KOG1262|consen 183 YEVVLADGE------LVRVTPDNEHSDLFYAIPWSQGTLGFLVAATIRIIKVKKYVKLTYIPVHGLDEYCKKITELSGDS 256 (543)
T ss_pred eEEEecCCe------EEEecCCcccCceEEEcccccCchheeeeeEEEEEeccceEEEEEEecccHHHHHHHHHhhcccc
Confidence 999999999 8888775 34699999999999999999999999877 4566654432 3333333331 1
Q ss_pred ccc----ceeEEEEeeCCCcEEEE--ecCCCCCCCCCCccccccccccchhhhhhhhccchhhhhhccccc------ccc
Q 009304 210 HQH----EFADIVWYPSQHKALYR--IDDRISSNATGNAVYNYIPFRSTLSATLATIRTTEENQESRSDAN------GKC 277 (538)
Q Consensus 210 ~~~----~~~~~~w~P~~~~~~~~--~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~------~~~ 277 (538)
+++ +|.+..-|.....+++. ..|.+... +.+-+|+- +|--.+. ...-+|..+......- -.-
T Consensus 257 dkntk~~dfvE~liyn~~egviMvG~fad~~dak-~~~kvN~v-gwwyKpW----FykHvet~lkkge~~EYIPlr~Yyh 330 (543)
T KOG1262|consen 257 DKNTKNADFVEGLIYNKNEGVIMVGNFADKVDAK-SNAKVNDV-GWWYKPW----FYKHVETFLKKGEGEEYIPLRSYYH 330 (543)
T ss_pred cccccccchhheeeecCCccEEEEEeccCccccc-cccccccc-hhhhhhH----HHHHHHHHHhcCCCceeeeHHHHHH
Confidence 112 56676666665555542 23433322 22234442 2211110 0001122211100000 000
Q ss_pred cccchhhhhhhhhccccccCCccccCcccccccccccccccccCCCCcccccccccCCCCCCcc---EEEEEEEEeccch
Q 009304 278 IGAKLVTSTLVTSAFGLTNNGIAFTGYPVIGHHNRLQSSGTCLDSPQDSLITACAWDPRIKGEF---FHQTTFSIRLSVV 354 (538)
Q Consensus 278 ~~~~~~~~~~~~~~~g~~~~~~~~t~~pvvg~~~~~~~~~~~~~~~~~~~~~~~~w~~r~~~~~---~~~~E~~vP~~~~ 354 (538)
+-.+.+.|.+.. -.+|-.-|+ .+.+...-|- |.-.++ +..=..-+|... ...++.-||+.++
T Consensus 331 RHtrsifWe~~~--------iiPFGn~~~----FRyllgWl~P--PKia~L-KaTt~ealRkly~~~hV~QDmlvPl~kl 395 (543)
T KOG1262|consen 331 RHTRSIFWELED--------IIPFGNNPV----FRYLLGWLCP--PKIAFL-KATTGEALRKLYFAKHVFQDMLVPLDKL 395 (543)
T ss_pred hccceeEEeeee--------eeecCCcHH----HHHHHHhcCC--ChHHHh-hcccHHHHHHHHHHHHHHHHhhccHHHH
Confidence 000011111110 011111111 0111122221 111111 000000001100 1125678999999
Q ss_pred HHHHHHHHHHHHhCcccccCceeec-c--eEEEEecCCCCCCCCCC-CeEEEEEeEeccC---CCCCccchHHHHHHHHH
Q 009304 355 KSFIDDIQKLIKLEPKALCGLELYN-G--ILMRYVKASSAYLGKQE-DSLDFDITYYRSK---DPMTPRLYEDILEEIEQ 427 (538)
Q Consensus 355 ~~~i~dv~~l~~~~~~~~~~~~~~~-p--i~iRfv~~s~a~Ls~~~-d~~~i~i~~y~~~---~~~~p~~~~~~~~eie~ 427 (538)
.++|.-+.+.++-+|-++|+...+. | =.+|--. ..=|.++. .++++|+-.|-.. ....|-....-++.||.
T Consensus 396 ~eald~~hke~evYPiwlcP~~l~~qp~~Gq~~~~p--~~r~~~~~~~~my~DvGvYg~pg~v~r~e~y~~~~a~RrmEk 473 (543)
T KOG1262|consen 396 KEALDTFHKEFEVYPIWLCPFRLYSQPGQGQLRPPP--KSRLVPGTNASMYNDVGVYGTPGQVERREPYNPTHAMRRMEK 473 (543)
T ss_pred HHHHHHHHhhheeeeeeeeeeeccCCCCCceecCCc--cccCCCCCcceeEEecccccCCccccccCCCCHHHHHHHHHH
Confidence 9999999999999999998744211 1 1111111 12244433 4899999877422 01222234567899999
Q ss_pred HHHhhcCCeeccCCCCCcchhhHHHhCCCHHHHHHHHHhcCCCCCCCchhhH
Q 009304 428 LAVFKYGGFPHWGKNRNLVFDGVIKKYKNAGEFFKVKDKYDPLGLFSSEWTD 479 (538)
Q Consensus 428 ~~~~k~gGrPHWgK~~~~~~~~~~~~Yp~~~~F~~~r~~~DP~g~F~n~~~~ 479 (538)
. ++.-+|---..-.-.++.+++.+++. -.-|-++|.+|-=.|-|-.-|-+
T Consensus 474 f-vr~v~Gfq~~YAd~~m~eeef~eMFd-~tLY~~~R~ky~cigaFp~vYdK 523 (543)
T KOG1262|consen 474 F-VRSVHGFQMLYADIYMSEEEFWEMFD-GTLYNQVRLKYHCIGAFPRVYDK 523 (543)
T ss_pred H-HHHccCcceeehhhhcCHHHHHHHhh-hHHHHHHHHHcCccccchHHHHh
Confidence 8 67777754444455667777777775 36677788888888888766543
No 23
>TIGR00179 murB UDP-N-acetylenolpyruvoylglucosamine reductase. This model describes MurB, UDP-N-acetylenolpyruvoylglucosamine reductase, which is also called UDP-N-acetylmuramate dehydrogenase. It is part of the pathway for the biosynthesis of the UDP-N-acetylmuramoyl-pentapeptide that is a precursor of bacterial peptidoglycan.
Probab=99.74 E-value=3.3e-17 Score=165.53 Aligned_cols=167 Identities=18% Similarity=0.274 Sum_probs=129.5
Q ss_pred CCCCCcCEEEeCCCHHHHHHHHHHHHHcCCceEEEeCCCCCCCCCCccCCCCcEEEEcCCCCCeeEEeCCCCEEEEeCCC
Q 009304 5 RSACKAADVAYPTSEQEIISVVSAATIAKRKMKVATRFSHSIPKLVCPDGQDGLLISTKYLNKIINIDTEAMTITMESGV 84 (538)
Q Consensus 5 ~~~~~p~~v~~P~s~~el~~~v~~a~~~~~~v~v~~ggghS~~~~~~~~~~~gv~Idl~~ln~v~~vd~~~~~vtv~aGv 84 (538)
++...|..+++|+|++||++++++|+++++++.++ |+||+.. ....+.++++|++++|+.+ .+|+ ..+++|+||+
T Consensus 8 ~igg~a~~~v~p~s~edl~~~l~~a~~~~~p~~vl-GgGSNll--~~d~~~~gvvi~l~~~~~~-~~~~-~~~v~v~aG~ 82 (284)
T TIGR00179 8 KIGGNARHIVCPESIEQLVNVLDNAKEEDQPLLIL-GEGSNLL--ILDDGRGGVIINLGKGIDI-EDDE-GEYVHVGGGE 82 (284)
T ss_pred ecCceeeEEEEeCCHHHHHHHHHHHHHcCCCEEEE-ecceEEE--EccCCcCeEEEECCCCceE-EEec-CCEEEEEcCC
Confidence 45778999999999999999999999999999999 6666532 1112346899999999886 4566 5799999999
Q ss_pred CHHHHHHHHHHCCCc-ccccccccccchhhhhccCCcCCCccCCCCchhcceeEEEEEeeCCCCCCcccEEEcCCCccch
Q 009304 85 TLRQIIGESAKAGLA-LPYTPYWWGLTIGGLIGTGAHGSSLWGRGSSIHDYVVELRIVSSGGPDDGYAKVRVLNENDQDL 163 (538)
Q Consensus 85 ~l~~L~~~l~~~Gl~-l~~~~~~~~~tvGG~i~tg~hGs~~~~~~G~~~d~V~~l~vV~~~G~~~g~~~v~~~~~~~~~f 163 (538)
.|.+|.+++.++||+ +....++++ ||||++.+|+.+ ++..+.|.|+++++|+++|+ +++++.++-.|
T Consensus 83 ~~~~l~~~~~~~Gl~GlE~l~giPG-tvGGai~mNAGa-----yG~~i~d~l~~v~vv~~~G~------~~~~~~~~~~f 150 (284)
T TIGR00179 83 NWHKLVKYALKNGLSGLEFLAGIPG-TVGGAVIMNAGA-----YGVEISEVLVYATILLATGK------TEWLTNEQLGF 150 (284)
T ss_pred cHHHHHHHHHHCCCcccccCCCCCc-hHHHHHHHhccc-----chhehhheEEEEEEEeCCCC------EEEEEHHHccc
Confidence 999999999999995 445555555 999999999977 34568889999999999998 88776643222
Q ss_pred hhhhcCCC-C-eEEEEEEEEEeEecCc
Q 009304 164 DAAKVSLG-V-LGVISQVTLKLQPLFK 188 (538)
Q Consensus 164 ~a~~~s~G-~-lGVIt~vtl~l~p~~~ 188 (538)
..-...+- . ..||++++|++.+.+.
T Consensus 151 ~YR~S~f~~~~~~iil~a~~~l~~~~~ 177 (284)
T TIGR00179 151 GYRTSIFQHKYVGLVLKAEFQLTLGFG 177 (284)
T ss_pred cCCccccCCCCcEEEEEEEEEeccccc
Confidence 22111111 1 3799999999977654
No 24
>PRK13906 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.74 E-value=3.5e-17 Score=166.83 Aligned_cols=164 Identities=21% Similarity=0.239 Sum_probs=127.9
Q ss_pred CCCCCcCEEEeCCCHHHHHHHHHHHHHcCCceEEEeCCCCCCCCCCccCCCCcEEEEcCCCCCeeEEeCCCCEEEEeCCC
Q 009304 5 RSACKAADVAYPTSEQEIISVVSAATIAKRKMKVATRFSHSIPKLVCPDGQDGLLISTKYLNKIINIDTEAMTITMESGV 84 (538)
Q Consensus 5 ~~~~~p~~v~~P~s~~el~~~v~~a~~~~~~v~v~~ggghS~~~~~~~~~~~gv~Idl~~ln~v~~vd~~~~~vtv~aGv 84 (538)
++...+..++.|+|++||++++++|+++++++.++ |+||... ....+-+|++|++++||++ +++. .+++|+||+
T Consensus 32 ~iGG~A~~~v~p~~~edv~~~v~~a~~~~ip~~vl-GgGSNll--~~d~g~~GvvI~l~~l~~i-~~~~--~~v~v~aG~ 105 (307)
T PRK13906 32 KTGGNADFYITPTKNEEVQAVVKYAYQNEIPVTYL-GNGSNII--IREGGIRGIVISLLSLDHI-EVSD--DAIIAGSGA 105 (307)
T ss_pred CcCceeEEEEEcCCHHHHHHHHHHHHHcCCCEEEE-cCceeEe--ecCCCcceEEEEecCccce-EEeC--CEEEEECCC
Confidence 34567899999999999999999999999999999 7777532 1112234899999889995 5653 589999999
Q ss_pred CHHHHHHHHHHCCCc-ccccccccccchhhhhccCCcCCCccCCCCchhcceeEEEEEeeCCCCCCcccEEEcCCCccch
Q 009304 85 TLRQIIGESAKAGLA-LPYTPYWWGLTIGGLIGTGAHGSSLWGRGSSIHDYVVELRIVSSGGPDDGYAKVRVLNENDQDL 163 (538)
Q Consensus 85 ~l~~L~~~l~~~Gl~-l~~~~~~~~~tvGG~i~tg~hGs~~~~~~G~~~d~V~~l~vV~~~G~~~g~~~v~~~~~~~~~f 163 (538)
.+.+|.+++.++||. +....++++ ||||++.+|+.+ ++|.++|.|.++++|+++|+ ++++++++-.|
T Consensus 106 ~~~~l~~~~~~~Gl~GlE~~~gIPG-tVGGav~mNaGa-----yGg~i~D~l~~v~vv~~~G~------~~~~~~~e~~f 173 (307)
T PRK13906 106 AIIDVSRVARDYALTGLEFACGIPG-SIGGAVYMNAGA-----YGGEVKDCIDYALCVNEQGS------LIKLTTKELEL 173 (307)
T ss_pred cHHHHHHHHHHcCCccchhhcCCCc-cHhHHHHhhCCc-----chhhhhhheeEEEEEeCCCC------EEEEEHHHccC
Confidence 999999999999996 334446666 999999999965 35789999999999999998 88887654333
Q ss_pred hhhhcCCC-CeEEEEEEEEEeEec
Q 009304 164 DAAKVSLG-VLGVISQVTLKLQPL 186 (538)
Q Consensus 164 ~a~~~s~G-~lGVIt~vtl~l~p~ 186 (538)
..-...+- .--||++++|++.|.
T Consensus 174 ~YR~S~~~~~~~ii~~~~~~l~~~ 197 (307)
T PRK13906 174 DYRNSIIQKEHLVVLEAAFTLAPG 197 (307)
T ss_pred cCCcccCCCCCEEEEEEEEEECCC
Confidence 22211111 124999999999873
No 25
>PRK12436 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.70 E-value=1.9e-16 Score=161.48 Aligned_cols=163 Identities=17% Similarity=0.181 Sum_probs=128.5
Q ss_pred CCCCCcCEEEeCCCHHHHHHHHHHHHHcCCceEEEeCCCCCCCCCCccCCCCcEEEEcCCCCCeeEEeCCCCEEEEeCCC
Q 009304 5 RSACKAADVAYPTSEQEIISVVSAATIAKRKMKVATRFSHSIPKLVCPDGQDGLLISTKYLNKIINIDTEAMTITMESGV 84 (538)
Q Consensus 5 ~~~~~p~~v~~P~s~~el~~~v~~a~~~~~~v~v~~ggghS~~~~~~~~~~~gv~Idl~~ln~v~~vd~~~~~vtv~aGv 84 (538)
++...|..++.|+|++||++++++|+++++++.++ |+||+.. ....+-+|++|+|++|+++ +++ ..+++|+||+
T Consensus 32 ~igg~a~~vv~p~~~edv~~~l~~a~~~~ip~~v~-GgGSNll--~~d~g~~GvvI~l~~l~~i-~~~--~~~v~v~aG~ 105 (305)
T PRK12436 32 KVGGKADVFVAPTNYDEIQEVIKYANKYNIPVTFL-GNGSNVI--IKDGGIRGITVSLIHITGV-TVT--GTTIVAQCGA 105 (305)
T ss_pred ccCceEEEEEecCCHHHHHHHHHHHHHcCCCEEEE-cCCeEEE--EeCCCeeEEEEEeCCcCcE-EEe--CCEEEEEeCC
Confidence 56778999999999999999999999999999999 7777643 1111224899999889984 565 4689999999
Q ss_pred CHHHHHHHHHHCCCc-ccccccccccchhhhhccCCcCCCccCCCCchhcceeEEEEEeeCCCCCCcccEEEcCCCccch
Q 009304 85 TLRQIIGESAKAGLA-LPYTPYWWGLTIGGLIGTGAHGSSLWGRGSSIHDYVVELRIVSSGGPDDGYAKVRVLNENDQDL 163 (538)
Q Consensus 85 ~l~~L~~~l~~~Gl~-l~~~~~~~~~tvGG~i~tg~hGs~~~~~~G~~~d~V~~l~vV~~~G~~~g~~~v~~~~~~~~~f 163 (538)
.+.+|.+++.++||. +....+++ .||||++++|+.+ +++.++|.+..+++++++|+ ++++++++ ..
T Consensus 106 ~~~~L~~~~~~~gl~Gle~~~giP-GtVGGav~~NAGa-----yG~~~~dvl~~v~vv~~~G~------v~~~~~~e-~~ 172 (305)
T PRK12436 106 AIIDVSRIALDHNLTGLEFACGIP-GSVGGALYMNAGA-----YGGEISFVLTEAVVMTGDGE------LRTLTKEA-FE 172 (305)
T ss_pred cHHHHHHHHHHcCCccchhhcCCc-cchhHHHHhcCcc-----chhehheeeeEEEEEeCCCC------EEEEEHHH-hc
Confidence 999999999999986 33333444 3999999999877 34578899999999999998 88887643 34
Q ss_pred hhhhcC-CC-CeEEEEEEEEEeEec
Q 009304 164 DAAKVS-LG-VLGVISQVTLKLQPL 186 (538)
Q Consensus 164 ~a~~~s-~G-~lGVIt~vtl~l~p~ 186 (538)
++.+.| +. .-.||++++|++.|.
T Consensus 173 f~YR~s~~~~~~~iil~a~~~l~~~ 197 (305)
T PRK12436 173 FGYRKSVFANNHYIILEARFELEEG 197 (305)
T ss_pred CcCCCCcCCCCCEEEEEEEEEEcCC
Confidence 444443 22 247999999999875
No 26
>PRK13903 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.70 E-value=3e-16 Score=162.47 Aligned_cols=165 Identities=19% Similarity=0.257 Sum_probs=134.3
Q ss_pred CCCCCcCEEEeCCCHHHHHHHHHHHHHcCCceEEEeCCCCCCCCCCccCCCCcEEEEcCCCCCeeEEeCCCCEEEEeCCC
Q 009304 5 RSACKAADVAYPTSEQEIISVVSAATIAKRKMKVATRFSHSIPKLVCPDGQDGLLISTKYLNKIINIDTEAMTITMESGV 84 (538)
Q Consensus 5 ~~~~~p~~v~~P~s~~el~~~v~~a~~~~~~v~v~~ggghS~~~~~~~~~~~gv~Idl~~ln~v~~vd~~~~~vtv~aGv 84 (538)
++...|..++.|+|++||++++++|+++++++.|+ |+||.. +...++-+|++|+++ +++ ++++.+..+|+|+||+
T Consensus 28 ~iGg~A~~~~~p~s~edl~~~l~~a~~~~~p~~vl-GgGSNl--Lv~D~g~~GvVI~l~-~~~-i~i~~~~~~v~vgAG~ 102 (363)
T PRK13903 28 RVGGPARRLVTCTSTEELVAAVRELDAAGEPLLVL-GGGSNL--VIADDGFDGTVVRVA-TRG-VTVDCGGGLVRAEAGA 102 (363)
T ss_pred ecCccceEEEEeCCHHHHHHHHHHHHHCCCCEEEE-eCCeeE--eECCCCccEEEEEeC-CCc-EEEeCCCCEEEEEcCC
Confidence 45677899999999999999999999999999999 666653 222223458999997 577 4677667799999999
Q ss_pred CHHHHHHHHHHCCCc-ccccccccccchhhhhccCCcCCCccCCCCchhcceeEEEEEeeC-CCCCCcccEEEcCCCccc
Q 009304 85 TLRQIIGESAKAGLA-LPYTPYWWGLTIGGLIGTGAHGSSLWGRGSSIHDYVVELRIVSSG-GPDDGYAKVRVLNENDQD 162 (538)
Q Consensus 85 ~l~~L~~~l~~~Gl~-l~~~~~~~~~tvGG~i~tg~hGs~~~~~~G~~~d~V~~l~vV~~~-G~~~g~~~v~~~~~~~~~ 162 (538)
.|.+|.+++.++||+ |..+.++++ ||||++.+|+.+ ++..++|.|.++++++.+ |+ +++++. ++.
T Consensus 103 ~~~~l~~~a~~~GL~GlE~laGIPG-TVGGAv~mNaGa-----yG~ei~D~l~sV~vvd~~~G~------~~~~~~-~el 169 (363)
T PRK13903 103 VWDDVVARTVEAGLGGLECLSGIPG-SAGATPVQNVGA-----YGQEVSDTITRVRLLDRRTGE------VRWVPA-ADL 169 (363)
T ss_pred CHHHHHHHHHHcCCccccccCCCCc-chhhHhhcCCCh-----hHHHHhhhEeEEEEEECCCCE------EEEEEH-HHc
Confidence 999999999999998 777777775 999999999977 345799999999999965 88 888764 245
Q ss_pred hhhhhcC---CCCeEEEEEEEEEeEecC
Q 009304 163 LDAAKVS---LGVLGVISQVTLKLQPLF 187 (538)
Q Consensus 163 f~a~~~s---~G~lGVIt~vtl~l~p~~ 187 (538)
+++.+.| .+..+||++++|++.|..
T Consensus 170 ~f~YR~S~f~~~~~~IIl~a~f~L~~~~ 197 (363)
T PRK13903 170 GFGYRTSVLKHSDRAVVLEVEFQLDPSG 197 (363)
T ss_pred ceeccccccCCCCCEEEEEEEEEEEcCC
Confidence 6677764 223789999999999874
No 27
>PRK14649 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.65 E-value=2e-15 Score=153.24 Aligned_cols=166 Identities=18% Similarity=0.162 Sum_probs=131.0
Q ss_pred CCCCCcCEEEeCCCHHHHHHHHHHHHHcCCceEEEeCCCCCCCCCCccCCCCcEEEEcCCCC-CeeEEeCCCCEEEEeCC
Q 009304 5 RSACKAADVAYPTSEQEIISVVSAATIAKRKMKVATRFSHSIPKLVCPDGQDGLLISTKYLN-KIINIDTEAMTITMESG 83 (538)
Q Consensus 5 ~~~~~p~~v~~P~s~~el~~~v~~a~~~~~~v~v~~ggghS~~~~~~~~~~~gv~Idl~~ln-~v~~vd~~~~~vtv~aG 83 (538)
++.+.+..++.|+|++||++++++|+++++++.++ |+||.. +....+-+|++|++++++ + +..+.+..+|+|+||
T Consensus 16 ~iGg~a~~~v~p~~~~dl~~~l~~~~~~~ip~~vl-G~GSNl--L~~d~g~~GvVI~l~~~~~~-i~~~~~~~~v~v~AG 91 (295)
T PRK14649 16 RIGGPARYFVEPTTPDEAIAAAAWAEQRQLPLFWL-GGGSNL--LVRDEGFDGLVARYRGQRWE-LHEHGDTAEVWVEAG 91 (295)
T ss_pred eeCceeeEEEEcCCHHHHHHHHHHHHHCCCCEEEE-ecceeE--EEeCCCcCeEEEEecCCCcE-EEEeCCcEEEEEEcC
Confidence 45677889999999999999999999999999999 555532 222223458999998754 5 345655559999999
Q ss_pred CCHHHHHHHHHHCCCc-ccccccccccchhhhhccCCcCCCccCCCCchhcceeEEEEEeeCCCCCCcccEEEcCCCccc
Q 009304 84 VTLRQIIGESAKAGLA-LPYTPYWWGLTIGGLIGTGAHGSSLWGRGSSIHDYVVELRIVSSGGPDDGYAKVRVLNENDQD 162 (538)
Q Consensus 84 v~l~~L~~~l~~~Gl~-l~~~~~~~~~tvGG~i~tg~hGs~~~~~~G~~~d~V~~l~vV~~~G~~~g~~~v~~~~~~~~~ 162 (538)
+.|.+|..++.++||+ |..+.++++ ||||++.+|+.. +++.++|.|.++++++.+|+ +++++.+ +.
T Consensus 92 ~~~~~l~~~~~~~GL~GlE~l~GIPG-TvGGa~~mNaGa-----yg~ei~d~l~~V~~~~~~g~------~~~~~~~-el 158 (295)
T PRK14649 92 APMAGTARRLAAQGWAGLEWAEGLPG-TIGGAIYGNAGC-----YGGDTATVLIRAWLLLNGSE------CVEWSVH-DF 158 (295)
T ss_pred CcHHHHHHHHHHcCCccccccCCCCc-chhHHHHhhccc-----cceEhheeEEEEEEEeCCCC------EEEEeHH-Hc
Confidence 9999999999999998 888888988 999999999976 46789999999999999998 8887654 33
Q ss_pred hhhhhcCC------CC----eEEEEEEEEEeEecC
Q 009304 163 LDAAKVSL------GV----LGVISQVTLKLQPLF 187 (538)
Q Consensus 163 f~a~~~s~------G~----lGVIt~vtl~l~p~~ 187 (538)
+.+.+.|. +- --||++++|++.|..
T Consensus 159 ~f~YR~S~~~~~~~~~~~~~~~ii~~~~~~l~~~~ 193 (295)
T PRK14649 159 AYGYRTSVLKQLRADGITWRPPLVLAARFRLHRDD 193 (295)
T ss_pred CcccceeecccccccccccCCeEEEEEEEEECCCC
Confidence 33333321 10 138999999998753
No 28
>PRK14653 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.64 E-value=3.6e-15 Score=150.92 Aligned_cols=162 Identities=23% Similarity=0.280 Sum_probs=126.6
Q ss_pred CCCCCcCEEEeCCCHHHHHHHHHHHHHcCCceEEEeCCCCCCCCCCccCCCCcEEEEcCCCCCeeEEeCCCCEEEEeCCC
Q 009304 5 RSACKAADVAYPTSEQEIISVVSAATIAKRKMKVATRFSHSIPKLVCPDGQDGLLISTKYLNKIINIDTEAMTITMESGV 84 (538)
Q Consensus 5 ~~~~~p~~v~~P~s~~el~~~v~~a~~~~~~v~v~~ggghS~~~~~~~~~~~gv~Idl~~ln~v~~vd~~~~~vtv~aGv 84 (538)
++...+..++.|+|++||+++++++++ +.++.++++|++.... ..+-+|++|++.+|+++ ++|. .+++|+||+
T Consensus 29 ~iGG~A~~~v~p~s~eel~~~~~~~~~-~~p~~vlG~GSNlLv~---d~g~~gvVI~l~~~~~i-~i~~--~~v~v~AG~ 101 (297)
T PRK14653 29 KIGGPVPLFAIPNSTNGFIETINLLKE-GIEVKILGNGTNVLPK---DEPMDFVVVSTERLDDI-FVDN--DKIICESGL 101 (297)
T ss_pred eeCcEEEEEEecCCHHHHHHHHHHHhc-CCCEEEEcCCeeEEEe---cCCccEEEEEeCCcCce-EEeC--CEEEEeCCC
Confidence 356678889999999999999999999 9999999555554221 12235899999789985 7763 689999999
Q ss_pred CHHHHHHHHHHCCCc-ccccccccccchhhhhccCCcCCCccCCCCchhcceeEEEEEeeCCCCCCcccEEEcCCCccch
Q 009304 85 TLRQIIGESAKAGLA-LPYTPYWWGLTIGGLIGTGAHGSSLWGRGSSIHDYVVELRIVSSGGPDDGYAKVRVLNENDQDL 163 (538)
Q Consensus 85 ~l~~L~~~l~~~Gl~-l~~~~~~~~~tvGG~i~tg~hGs~~~~~~G~~~d~V~~l~vV~~~G~~~g~~~v~~~~~~~~~f 163 (538)
.|.+|..++.++||. |..+.++|+ ||||++.+|+.+ +++.++|.|.++++++ +|+ +++++.++-.|
T Consensus 102 ~l~~L~~~~~~~GL~GlE~l~gIPG-TVGGAv~mNAGa-----yG~ei~d~l~~V~~~d-~g~------v~~~~~~e~~f 168 (297)
T PRK14653 102 SLKKLCLVAAKNGLSGFENAYGIPG-SVGGAVYMNAGA-----YGWETAENIVEVVAYD-GKK------IIRLGKNEIKF 168 (297)
T ss_pred cHHHHHHHHHHCCCcchhhhcCCch-hHHHHHHHhCcc-----CchhhheeEEEEEEEC-CCE------EEEEchhhccc
Confidence 999999999999996 666666644 899999999987 3456999999999999 676 88887653333
Q ss_pred --hhhhc-CCCCeEEEEEEEEEeEecC
Q 009304 164 --DAAKV-SLGVLGVISQVTLKLQPLF 187 (538)
Q Consensus 164 --~a~~~-s~G~lGVIt~vtl~l~p~~ 187 (538)
+.... +.+.+ ||++++|++.|..
T Consensus 169 ~YR~S~~~~~~~~-iI~~a~f~L~~~~ 194 (297)
T PRK14653 169 SYRNSIFKEEKDL-IILRVTFKLKKGN 194 (297)
T ss_pred cCccccCCCCCcE-EEEEEEEEEecCC
Confidence 32222 22344 9999999998863
No 29
>PF09129 Chol_subst-bind: Cholesterol oxidase, substrate-binding; InterPro: IPR015213 The substrate-binding domain found in cholesterol oxidase is composed of an eight-stranded mixed beta-pleated sheet and six alpha-helices. This domain is positioned over the isoalloxazine ring system of the FAD cofactor bound by the FAD-binding domain (IPR006094 from INTERPRO) and forms the roof of the active site cavity, allowing for catalysis of oxidation and isomerisation of cholesterol to cholest-4-en-3-one []. ; PDB: 3JS8_A 1I19_B 2I0K_A.
Probab=99.57 E-value=3.1e-14 Score=137.54 Aligned_cols=245 Identities=17% Similarity=0.243 Sum_probs=124.7
Q ss_pred HhhhccccceeEEEEeeCCCcEEEEecCCCCCCCCCC-ccccccccccchhhhhhhhccchhhhhhcccccccccccchh
Q 009304 205 AGSFGHQHEFADIVWYPSQHKALYRIDDRISSNATGN-AVYNYIPFRSTLSATLATIRTTEENQESRSDANGKCIGAKLV 283 (538)
Q Consensus 205 ~~~~~~~~~~~~~~w~P~~~~~~~~~~~r~~~~~~~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 283 (538)
++.++++.--.+..|||++++.++++|...|...... .|.. +++...+.. ..+.+.+.+.++. .+... +
T Consensus 26 ~~sfld~sGR~EaIWfPFT~~PWLKVWs~sP~kP~~SR~V~~--PyNYpFSD~--ip~~vtDLi~~i~--~g~~~----l 95 (321)
T PF09129_consen 26 FASFLDRSGRVEAIWFPFTDNPWLKVWSVSPTKPLLSREVTG--PYNYPFSDN--IPEPVTDLIGQIV--AGNPG----L 95 (321)
T ss_dssp HHHHHHHCSEEEEEE-TT-SS-EEEEEEE-SS--TTSEE-SS--S---HHHHS----HHHHHHHHHHH--TT-GG----G
T ss_pred HHHHHhhcCcEEEEEecCCCCcceeeeccCCCCCCcccccCC--CCCCCcccc--ccHHHHHHHHHHH--cCCcc----c
Confidence 5556666667899999999999999998776542211 1211 010001110 1112233332221 11111 2
Q ss_pred hhhhhhhccccccCCcccc-CcccccccccccccccccCCCCcccccccccCCCCCCccEEEEEEEEe--ccchHHHHHH
Q 009304 284 TSTLVTSAFGLTNNGIAFT-GYPVIGHHNRLQSSGTCLDSPQDSLITACAWDPRIKGEFFHQTTFSIR--LSVVKSFIDD 360 (538)
Q Consensus 284 ~~~~~~~~~g~~~~~~~~t-~~pvvg~~~~~~~~~~~~~~~~~~~~~~~~w~~r~~~~~~~~~E~~vP--~~~~~~~i~d 360 (538)
...+....+.++..|...| ...++||+..++. ++ |....++....|+|= .+++..+|.+
T Consensus 96 tP~~Gq~q~~~~~aGL~~t~s~DiWGwSkd~l~---Yi---------------rpTTLRVTAnGyAVlTrRaniQrVi~e 157 (321)
T PF09129_consen 96 TPLFGQTQYAITGAGLAATDSSDIWGWSKDVLL---YI---------------RPTTLRVTANGYAVLTRRANIQRVINE 157 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-SEEEEEHHHHH----------------------TTS---EEEEEEEEE-GGGHHHHHHH
T ss_pred cchhhHHHHHHHHHHHhccccccccccccccee---Ee---------------ccceEEEecCCEEEEecHHHHHHHHHH
Confidence 2222222333332232222 3578999987752 11 223467788899995 4555666665
Q ss_pred HHHH----HHhCcccccCceeecceEEEEecCCCC-----------CCC---C--C---CC-eEEEEEeEeccCCCCCcc
Q 009304 361 IQKL----IKLEPKALCGLELYNGILMRYVKASSA-----------YLG---K--Q---ED-SLDFDITYYRSKDPMTPR 416 (538)
Q Consensus 361 v~~l----~~~~~~~~~~~~~~~pi~iRfv~~s~a-----------~Ls---~--~---~d-~~~i~i~~y~~~~~~~p~ 416 (538)
+.++ ++.+.. ...+++..|+|||..+=|+. -|| | . -| ++|+||.... ++|
T Consensus 158 F~~~y~~r~~~Y~~-~G~yP~NgPvEIRvtGLD~p~dv~v~~a~~P~LSAlrPrpDhpeWDvAiWldvLtlP----GTP- 231 (321)
T PF09129_consen 158 FVAFYQERLAAYQA-QGQYPMNGPVEIRVTGLDQPADVGVPGAVPPTLSALRPRPDHPEWDVAIWLDVLTLP----GTP- 231 (321)
T ss_dssp HHHHHHHHHHHHHH-TT-----S-EEEEEEE---GGGSSSTTS-S-TT-TT---TT-TT--EEEEEEEEE-T----T-T-
T ss_pred HHHHHHHHHHHHHH-cCCCCCCCceEEEEecCCChhhcCCCCCCCccccccCCCCCCCCcceEEEEeeccCC----CCc-
Confidence 5444 433221 22467889999999876532 244 2 1 12 7999998875 566
Q ss_pred chHHHHHHHHHHHHhhcCC-----eeccCCCCCcchhh-----------HHHhC----C---CHHHHHHHHHhcCCCCCC
Q 009304 417 LYEDILEEIEQLAVFKYGG-----FPHWGKNRNLVFDG-----------VIKKY----K---NAGEFFKVKDKYDPLGLF 473 (538)
Q Consensus 417 ~~~~~~~eie~~~~~k~gG-----rPHWgK~~~~~~~~-----------~~~~Y----p---~~~~F~~~r~~~DP~g~F 473 (538)
....|++||||+++..|.| ||.|.|...++.+. +...| | +|+.-.+...+|||+++|
T Consensus 232 ~a~~Fyre~EqWm~~~y~g~yAt~RpEWSKGWayt~~~aw~d~~~l~~~iP~~~~~G~p~~~~Wd~A~atL~~~DPhriF 311 (321)
T PF09129_consen 232 GANAFYREMEQWMFSNYSGSYATVRPEWSKGWAYTDDAAWTDETVLTTTIPNSYRAGQPADDNWDTARATLNRYDPHRIF 311 (321)
T ss_dssp THHHHHHHHHHHHHHHSBTTTEEEEE-TTSB-S-SSS-TT--HHHHHTHHHHHTTTTS-CCCSHHHHHHHHHHH-TT--S
T ss_pred cHHHHHHHHHHHHHhhcCCccceEeeeeccccccCCCccccChhHHhhhchHHHhcCCCCCCCHHHHHHHHhccCccchh
Confidence 3567999999998888999 99999998877642 22344 2 799999999999999999
Q ss_pred CchhhHhhhC
Q 009304 474 SSEWTDQVLG 483 (538)
Q Consensus 474 ~n~~~~~llg 483 (538)
+|+++|+||+
T Consensus 312 ss~llD~Llp 321 (321)
T PF09129_consen 312 SSPLLDRLLP 321 (321)
T ss_dssp --HHHHHH--
T ss_pred ccHHHHhhcC
Confidence 9999999984
No 30
>PRK14650 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.52 E-value=1.4e-13 Score=138.97 Aligned_cols=165 Identities=19% Similarity=0.164 Sum_probs=129.0
Q ss_pred CCCCCcCEEEeCCCHHHHHHHHHHHHHcCCceEEEeCCCCCCCCCCccCC-CCcEEEEcCCCCCeeEEeCCCCEEEEeCC
Q 009304 5 RSACKAADVAYPTSEQEIISVVSAATIAKRKMKVATRFSHSIPKLVCPDG-QDGLLISTKYLNKIINIDTEAMTITMESG 83 (538)
Q Consensus 5 ~~~~~p~~v~~P~s~~el~~~v~~a~~~~~~v~v~~ggghS~~~~~~~~~-~~gv~Idl~~ln~v~~vd~~~~~vtv~aG 83 (538)
++.+.+..++.|+|++||+++++.+.+++.++.++++|++... ...+ -+|++|.+.+|+.+ +++. .+++|+||
T Consensus 28 ~iGG~A~~~~~p~~~~eL~~~l~~~~~~~~p~~vlG~GSNlLv---~D~g~~~g~vi~~~~~~~i-~~~~--~~v~a~AG 101 (302)
T PRK14650 28 KIGGISKLFLTPKTIKDAEHIFKAAIEEKIKIFILGGGSNILI---NDEEEIDFPIIYTGHLNKI-EIHD--NQIVAECG 101 (302)
T ss_pred eeCcEEEEEEecCCHHHHHHHHHHHHHcCCCEEEEeceeEEEE---ECCCccceEEEEECCcCcE-EEeC--CEEEEEeC
Confidence 3566778899999999999999999999999999966666432 2222 34788988678884 6653 47999999
Q ss_pred CCHHHHHHHHHHCCCc-ccccccccccchhhhhccCCcCCCccCCCCchhcceeEEEEEeeCCCCCCcccEEEcCCCccc
Q 009304 84 VTLRQIIGESAKAGLA-LPYTPYWWGLTIGGLIGTGAHGSSLWGRGSSIHDYVVELRIVSSGGPDDGYAKVRVLNENDQD 162 (538)
Q Consensus 84 v~l~~L~~~l~~~Gl~-l~~~~~~~~~tvGG~i~tg~hGs~~~~~~G~~~d~V~~l~vV~~~G~~~g~~~v~~~~~~~~~ 162 (538)
+.|.+|..++.++||+ |..+.++|+ ||||++.+|+.. +++.++|.|.++++++.+|+ +++++.++-.
T Consensus 102 ~~~~~l~~~~~~~gl~GlE~l~gIPG-TVGGAv~mNAGa-----yG~ei~d~l~sV~~~d~~g~------~~~~~~~e~~ 169 (302)
T PRK14650 102 TNFEDLCKFALQNELSGLEFIYGLPG-TLGGAIWMNARC-----FGNEISEILDKITFIDEKGK------TICKKFKKEE 169 (302)
T ss_pred CcHHHHHHHHHHcCCchhhhhcCCCc-chhHHHHhhCCc-----cccchheeEEEEEEEECCCC------EEEEEHHHcC
Confidence 9999999999999998 888888776 999999999965 45689999999999999998 8877654333
Q ss_pred hhhhhcCCC-CeEEEEEEEEEeEecC
Q 009304 163 LDAAKVSLG-VLGVISQVTLKLQPLF 187 (538)
Q Consensus 163 f~a~~~s~G-~lGVIt~vtl~l~p~~ 187 (538)
|..-...+- .=.||++++|++.|..
T Consensus 170 f~YR~S~f~~~~~iIl~a~f~L~~~~ 195 (302)
T PRK14650 170 FKYKISPFQNKNTFILKATLNLKKGN 195 (302)
T ss_pred cccccccCCCCCEEEEEEEEEEcCCC
Confidence 322111111 1259999999998864
No 31
>PRK00046 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.52 E-value=1.5e-13 Score=140.78 Aligned_cols=165 Identities=14% Similarity=0.156 Sum_probs=127.7
Q ss_pred CCCCCcCEEEeCCCHHHHHHHHHHHHHcCCceEEEeCCCCCCCCCCccCCCCcEEEEcCCCCCeeEEe-CCC--CEEEEe
Q 009304 5 RSACKAADVAYPTSEQEIISVVSAATIAKRKMKVATRFSHSIPKLVCPDGQDGLLISTKYLNKIINID-TEA--MTITME 81 (538)
Q Consensus 5 ~~~~~p~~v~~P~s~~el~~~v~~a~~~~~~v~v~~ggghS~~~~~~~~~~~gv~Idl~~ln~v~~vd-~~~--~~vtv~ 81 (538)
++...+..++.|+|++||++++++|+++++++.|+++|++-... ++-.|++|.+ +|+++ +++ .+. .+|+|+
T Consensus 16 riGG~A~~~~~p~~~~el~~~~~~~~~~~~p~~vlG~GSNlLv~----D~~~g~vI~~-~~~~~-~~~~~~~~~~~v~a~ 89 (334)
T PRK00046 16 GIDARARHLVEAESEEQLLEALADARAAGLPVLVLGGGSNVLFT----EDFDGTVLLN-RIKGI-EVLSEDDDAWYLHVG 89 (334)
T ss_pred ccCcEEeEEEeeCCHHHHHHHHHHHHHcCCCEEEEeceEEEEEC----CCCCEEEEEe-cCCce-EEEecCCCeEEEEEE
Confidence 45667888999999999999999999999999999666665322 2245888987 48884 553 222 389999
Q ss_pred CCCCHHHHHHHHHHCCCc-ccccccccccchhhhhccCCcCCCccCCCCchhcceeEEEEEeeC-CCCCCcccEEEcCCC
Q 009304 82 SGVTLRQIIGESAKAGLA-LPYTPYWWGLTIGGLIGTGAHGSSLWGRGSSIHDYVVELRIVSSG-GPDDGYAKVRVLNEN 159 (538)
Q Consensus 82 aGv~l~~L~~~l~~~Gl~-l~~~~~~~~~tvGG~i~tg~hGs~~~~~~G~~~d~V~~l~vV~~~-G~~~g~~~v~~~~~~ 159 (538)
||+.|.+|.+++.++||+ |..+.++++ ||||++.+|+.. +++.++|.|.++++++.+ |+ +++++.+
T Consensus 90 AG~~~~~l~~~~~~~gl~GlE~l~gIPG-TVGGAv~mNaGa-----yG~ei~d~l~~V~v~d~~~g~------~~~~~~~ 157 (334)
T PRK00046 90 AGENWHDLVLWTLQQGMPGLENLALIPG-TVGAAPIQNIGA-----YGVELKDVCDYVEALDLATGE------FVRLSAA 157 (334)
T ss_pred cCCcHHHHHHHHHHcCchhhHHhcCCCc-chhHHHHhcCCc-----CcccHheeEEEEEEEECCCCc------EEEEEHH
Confidence 999999999999999998 777777776 999999999966 456899999999999987 88 8888764
Q ss_pred ccch--hhhhcCCC--CeEEEEEEEEEeEecC
Q 009304 160 DQDL--DAAKVSLG--VLGVISQVTLKLQPLF 187 (538)
Q Consensus 160 ~~~f--~a~~~s~G--~lGVIt~vtl~l~p~~ 187 (538)
+-.| +....-.. .--||++++|++.|..
T Consensus 158 e~~f~YR~S~f~~~~~~~~iVl~a~f~L~~~~ 189 (334)
T PRK00046 158 ECRFGYRDSIFKHEYPDRYAITAVGFRLPKQW 189 (334)
T ss_pred HcCcccccccCCCCCcCCEEEEEEEEEecCCC
Confidence 3233 22111111 0149999999999863
No 32
>COG0812 MurB UDP-N-acetylmuramate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.51 E-value=2.3e-13 Score=135.42 Aligned_cols=165 Identities=21% Similarity=0.267 Sum_probs=134.2
Q ss_pred CCCCCcCEEEeCCCHHHHHHHHHHHHHcCCceEEEeCCCCCCCCCCccCCCCcEEEEcCCCCCeeEEeCCCCEEEEeCCC
Q 009304 5 RSACKAADVAYPTSEQEIISVVSAATIAKRKMKVATRFSHSIPKLVCPDGQDGLLISTKYLNKIINIDTEAMTITMESGV 84 (538)
Q Consensus 5 ~~~~~p~~v~~P~s~~el~~~v~~a~~~~~~v~v~~ggghS~~~~~~~~~~~gv~Idl~~ln~v~~vd~~~~~vtv~aGv 84 (538)
++...++.++.|++++||.++++.+.+.+.|+.++++|++.. ...++.++++|.+.+++. +.++.+..+++|++|+
T Consensus 16 riGg~A~~~~~~~~~e~l~~~~~~~~~~~~p~~ilG~GSNlL---v~d~g~~gvvi~~~~~~~-~~~~~~~~~i~a~aG~ 91 (291)
T COG0812 16 RIGGPAEVLVEPRDIEELKAALKYAKAEDLPVLILGGGSNLL---VRDGGIGGVVIKLGKLNF-IEIEGDDGLIEAGAGA 91 (291)
T ss_pred ecCcceeEEEecCCHHHHHHHHHhhhhcCCCEEEEecCceEE---EecCCCceEEEEcccccc-eeeeccCCeEEEccCC
Confidence 456778899999999999999999999999999996666542 222345689999998877 5677777799999999
Q ss_pred CHHHHHHHHHHCCCc-ccccccccccchhhhhccCCcCCCccCCCCchhcceeEEEEEeeCCCCCCcccEEEcCCCccch
Q 009304 85 TLRQIIGESAKAGLA-LPYTPYWWGLTIGGLIGTGAHGSSLWGRGSSIHDYVVELRIVSSGGPDDGYAKVRVLNENDQDL 163 (538)
Q Consensus 85 ~l~~L~~~l~~~Gl~-l~~~~~~~~~tvGG~i~tg~hGs~~~~~~G~~~d~V~~l~vV~~~G~~~g~~~v~~~~~~~~~f 163 (538)
.|.+|.+++.++||. |....++|+ ||||++.+|++- +++.++|.+..+++++.+|+ +++++.++-.|
T Consensus 92 ~~~~l~~~~~~~gl~GlE~l~gIPG-svGgav~mNaGA-----yG~Ei~d~~~~v~~ld~~G~------~~~l~~~el~f 159 (291)
T COG0812 92 PWHDLVRFALENGLSGLEFLAGIPG-SVGGAVIMNAGA-----YGVEISDVLVSVEVLDRDGE------VRWLSAEELGF 159 (291)
T ss_pred cHHHHHHHHHHcCCcchhhhcCCCc-ccchhhhccCcc-----cccchheeEEEEEEEcCCCC------EEEEEHHHhCc
Confidence 999999999999997 778778776 999999999966 46789999999999999998 99887653333
Q ss_pred h--hhhcCCCCeEEEEEEEEEeEec
Q 009304 164 D--AAKVSLGVLGVISQVTLKLQPL 186 (538)
Q Consensus 164 ~--a~~~s~G~lGVIt~vtl~l~p~ 186 (538)
. -...--.. .||++|+|++.|-
T Consensus 160 ~YR~S~f~~~~-~vvl~v~f~L~~~ 183 (291)
T COG0812 160 GYRTSPFKKEY-LVVLSVEFKLTKG 183 (291)
T ss_pred ccccCcCCCCC-EEEEEEEEEeCCC
Confidence 2 22111111 8999999999986
No 33
>PRK14648 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.44 E-value=1.4e-12 Score=133.62 Aligned_cols=128 Identities=19% Similarity=0.230 Sum_probs=105.2
Q ss_pred CCCCCcCEEEeCCCHHHHHHHHHHHHHcCCceEEEeCCCCCCCCCCccCCCCcEEEEcCCCCCeeEE---eCCCCEEEEe
Q 009304 5 RSACKAADVAYPTSEQEIISVVSAATIAKRKMKVATRFSHSIPKLVCPDGQDGLLISTKYLNKIINI---DTEAMTITME 81 (538)
Q Consensus 5 ~~~~~p~~v~~P~s~~el~~~v~~a~~~~~~v~v~~ggghS~~~~~~~~~~~gv~Idl~~ln~v~~v---d~~~~~vtv~ 81 (538)
++.+.+..++.|+|++||+++++++.+++.++.++++|++-.. ...+-.|++|.+.+|+++ ++ +.+...++|+
T Consensus 25 rIGG~A~~~~~p~s~~el~~~l~~~~~~~~p~~iLG~GSNlL~---~D~g~~G~VI~l~~~~~i-~i~~~~~~~~~v~ag 100 (354)
T PRK14648 25 RIGGAAQFWAEPRSCTQLRALIEEAQRARIPLSLIGGGSNVLI---ADEGVPGLMLSLRRFRSL-HTQTQRDGSVLVHAG 100 (354)
T ss_pred eeCcEEEEEEeeCCHHHHHHHHHHHHHcCCCEEEEeceeEEEE---eCCCccEEEEEeCCcCce-EEeeccCCcEEEEEE
Confidence 3566788899999999999999999999999999966666422 222345899999778885 44 2233479999
Q ss_pred CCCCHHHHHHHHHHCCCc-ccccccccccchhhhhccCCcCCCccCCCCchhcceeEEEEEe
Q 009304 82 SGVTLRQIIGESAKAGLA-LPYTPYWWGLTIGGLIGTGAHGSSLWGRGSSIHDYVVELRIVS 142 (538)
Q Consensus 82 aGv~l~~L~~~l~~~Gl~-l~~~~~~~~~tvGG~i~tg~hGs~~~~~~G~~~d~V~~l~vV~ 142 (538)
||+.|.+|..++.++||. |..+.++|+ ||||++.+|+.. +++.+.|.|.++++++
T Consensus 101 AG~~~~~Lv~~~~~~gl~GlE~laGIPG-TVGGAv~mNAGA-----yG~ei~d~l~~V~v~d 156 (354)
T PRK14648 101 AGLPVAALLAFCAHHALRGLETFAGLPG-SVGGAAYMNARC-----YGRAIADCFHSARTLV 156 (354)
T ss_pred eCCcHHHHHHHHHHcCCcchhhhcCCCc-chhhHhhhcCCc-----cceEhhheEEEEEEEe
Confidence 999999999999999998 888888876 999999999966 4568999999999995
No 34
>PRK14651 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.26 E-value=5.4e-11 Score=118.67 Aligned_cols=152 Identities=18% Similarity=0.198 Sum_probs=112.7
Q ss_pred CCCCcCEEEeCCCHHHHHHHHHHHHHcCCceEEEeCCCCCCCCCCccCCCCcEEEEcCC-CCCeeEEeCCCCEEEEeCCC
Q 009304 6 SACKAADVAYPTSEQEIISVVSAATIAKRKMKVATRFSHSIPKLVCPDGQDGLLISTKY-LNKIINIDTEAMTITMESGV 84 (538)
Q Consensus 6 ~~~~p~~v~~P~s~~el~~~v~~a~~~~~~v~v~~ggghS~~~~~~~~~~~gv~Idl~~-ln~v~~vd~~~~~vtv~aGv 84 (538)
+...+..++ |+|++||++++ +.++.++++|++... ...+-+|++|.+.+ ++. ++++. +|+||+
T Consensus 17 iGG~A~~~~-p~~~~~l~~~~------~~p~~vlG~GSNlL~---~D~g~~g~vI~l~~~~~~-~~~~~-----~a~AG~ 80 (273)
T PRK14651 17 VGGPAELWT-VETHEQLAEAT------EAPYRVLGGGSNLLV---SDAGVPERVIRLGGEFAE-WDLDG-----WVGGGV 80 (273)
T ss_pred cCceEEEEe-cCCHHHHHHHH------CCCeEEEeceeEEEE---cCCCcceEEEEECCccee-EeECC-----EEECCC
Confidence 455566677 99999999988 478999966666532 11223588898866 555 34432 699999
Q ss_pred CHHHHHHHHHHCCCc-ccccccccccchhhhhccCCcCCCccCCCCchhcceeEEEEEeeCCCCCCcccEEEcCCCccch
Q 009304 85 TLRQIIGESAKAGLA-LPYTPYWWGLTIGGLIGTGAHGSSLWGRGSSIHDYVVELRIVSSGGPDDGYAKVRVLNENDQDL 163 (538)
Q Consensus 85 ~l~~L~~~l~~~Gl~-l~~~~~~~~~tvGG~i~tg~hGs~~~~~~G~~~d~V~~l~vV~~~G~~~g~~~v~~~~~~~~~f 163 (538)
.|.+|.+++.++||+ |..+.++|+ ||||++.+|+.. +++.++|.|.++++++ +|+ +++++.++-.|
T Consensus 81 ~~~~l~~~~~~~gl~GlE~l~gIPG-TVGGAv~mNaGa-----yG~ei~d~l~~V~~~~-~g~------~~~~~~~e~~f 147 (273)
T PRK14651 81 PLPGLVRRAARLGLSGLEGLVGIPA-QVGGAVKMNAGT-----RFGEMADALHTVEIVH-DGG------FHQYSPDELGF 147 (273)
T ss_pred cHHHHHHHHHHCCCcchhhhcCCCc-chhhHHHhhCCc-----cccChheeEEEEEEEE-CCC------EEEEEHHHccc
Confidence 999999999999997 778778776 999999999966 4568999999999997 888 88887643233
Q ss_pred hhhhcCCCCeEEEEEEEEEeEec
Q 009304 164 DAAKVSLGVLGVISQVTLKLQPL 186 (538)
Q Consensus 164 ~a~~~s~G~lGVIt~vtl~l~p~ 186 (538)
..-...+-.=-||++++|++.|.
T Consensus 148 ~YR~S~~~~~~iIl~a~f~l~~~ 170 (273)
T PRK14651 148 GYRHSGLPPGHVVTRVRLKLRPS 170 (273)
T ss_pred cccccCCCCCEEEEEEEEEECCC
Confidence 22222221114999999999886
No 35
>PRK13904 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=98.90 E-value=1e-08 Score=101.46 Aligned_cols=146 Identities=16% Similarity=0.218 Sum_probs=103.5
Q ss_pred CCCCCcCEEEeCCCHHHHHHHHHHHHHcCCceEEEeCCCCCCCCCCccCCCCcEEEEcCCCCCeeEEeCCCCEEEEeCCC
Q 009304 5 RSACKAADVAYPTSEQEIISVVSAATIAKRKMKVATRFSHSIPKLVCPDGQDGLLISTKYLNKIINIDTEAMTITMESGV 84 (538)
Q Consensus 5 ~~~~~p~~v~~P~s~~el~~~v~~a~~~~~~v~v~~ggghS~~~~~~~~~~~gv~Idl~~ln~v~~vd~~~~~vtv~aGv 84 (538)
++...+..++.|.+.+ + ++++.++++|++-... ..+ .+.+|-+.+++.+ +++. .+++|+||+
T Consensus 14 ~iGG~A~~~~~~~~~~-l----------~~p~~vlG~GSNlLv~---D~g-~~~vv~~~~~~~~-~~~~--~~v~~~AG~ 75 (257)
T PRK13904 14 KIGPPLEVLVLEEIDD-F----------SQDGQIIGGANNLLIS---PNP-KNLAILGKNFDYI-KIDG--ECLEIGGAT 75 (257)
T ss_pred eECceEEEEEEechhh-h----------CCCeEEEeceeEEEEe---cCC-ccEEEEccCcCeE-EEeC--CEEEEEcCC
Confidence 3456677788888887 6 6899999666664321 112 2344445568774 5654 479999999
Q ss_pred CHHHHHHHHHHCCCc-ccccccccccchhhhhccCCcCCCccCCCCchhcceeEEEEEeeCCCCCCcccEEEcCCCccch
Q 009304 85 TLRQIIGESAKAGLA-LPYTPYWWGLTIGGLIGTGAHGSSLWGRGSSIHDYVVELRIVSSGGPDDGYAKVRVLNENDQDL 163 (538)
Q Consensus 85 ~l~~L~~~l~~~Gl~-l~~~~~~~~~tvGG~i~tg~hGs~~~~~~G~~~d~V~~l~vV~~~G~~~g~~~v~~~~~~~~~f 163 (538)
.|.+|.+++.++||. |..+.++|+ ||||++.+|+.. +++.++|.|.++++++ |. + +.++-.|
T Consensus 76 ~l~~l~~~~~~~gl~GlE~l~gIPG-tVGGAv~mNaGa-----~g~ei~d~l~~V~~~~--~~------~---~~~e~~f 138 (257)
T PRK13904 76 KSGKIFNYAKKNNLGGFEFLGKLPG-TLGGLVKMNAGL-----KEYEISNNLESICTNG--GW------I---EKEDIGF 138 (257)
T ss_pred cHHHHHHHHHHCCCchhhhhcCCCc-cHHHHHHhcCCc-----CccchheeEEEEEEEe--eE------E---eHHHCcc
Confidence 999999999999998 888888776 999999999866 3568999999999997 43 2 2221112
Q ss_pred hhhhcCCCCeEEEEEEEEEeEecC
Q 009304 164 DAAKVSLGVLGVISQVTLKLQPLF 187 (538)
Q Consensus 164 ~a~~~s~G~lGVIt~vtl~l~p~~ 187 (538)
..-...+- .||++++|++.|..
T Consensus 139 ~YR~S~~~--~iIl~a~f~l~~~~ 160 (257)
T PRK13904 139 GYRSSGIN--GVILEARFKKTHGF 160 (257)
T ss_pred cccCcCCC--cEEEEEEEEECCCC
Confidence 11111121 39999999998854
No 36
>PF00941 FAD_binding_5: FAD binding domain in molybdopterin dehydrogenase; InterPro: IPR002346 Oxidoreductases, that also bind molybdopterin, have essentially no similarity outside this common domain. They include aldehyde oxidase (1.2.3.1 from EC), that converts an aldehyde and water to an acid and hydrogen peroxide, and xanthine dehydrogenase (1.1.1.204 from EC), that converts xanthine to urate. These enzymes require molybdopterin and FAD as cofactors and have and two 2FE-2S clusters. Another enzyme that contains this domain is the Pseudomonas thermocarboxydovorans carbon monoxide oxygenase.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2E1Q_C 2CKJ_A 3EUB_K 3NS1_K 3NVV_B 1FO4_B 3AM9_A 3AX7_B 3BDJ_A 3ETR_B ....
Probab=97.41 E-value=0.00027 Score=66.35 Aligned_cols=129 Identities=16% Similarity=0.177 Sum_probs=74.4
Q ss_pred cCEEEeCCCHHHHHHHHHHHHHcCCceEEEeCCCCCCCCCCccC-CCCcEEEEcCCCCCeeEEeCCCCEEEEeCCCCHHH
Q 009304 10 AADVAYPTSEQEIISVVSAATIAKRKMKVATRFSHSIPKLVCPD-GQDGLLISTKYLNKIINIDTEAMTITMESGVTLRQ 88 (538)
Q Consensus 10 p~~v~~P~s~~el~~~v~~a~~~~~~v~v~~ggghS~~~~~~~~-~~~gv~Idl~~ln~v~~vd~~~~~vtv~aGv~l~~ 88 (538)
+..++.|+|.+|+.++++ . +-..+++ .||.+.......+ ..-..+||++++..+-.|+.+.+.++++|++++.+
T Consensus 2 ~~~~~~P~sl~ea~~ll~--~--~~~a~~v-aGgT~l~~~~~~~~~~~~~lIdl~~i~eL~~I~~~~~~l~IGA~vtl~~ 76 (171)
T PF00941_consen 2 PFEYFRPKSLEEALELLA--K--GPDARIV-AGGTDLGVQMREGILSPDVLIDLSRIPELNGISEDDGGLRIGAAVTLSE 76 (171)
T ss_dssp S-EEEE-SSHHHHHHHHH--H--GTTEEEE-SS-TTHHHHHHTTS---SEEEEGTTSGGGG-EEEETSEEEEETTSBHHH
T ss_pred CeEEEccCCHHHHHHHHh--c--CCCCEEE-eCCCccchhcccCccccceEEEeEEecccccEEEeccEEEECCCccHHH
Confidence 457899999999999998 2 2256777 4554321111000 12258999999866666666688999999999999
Q ss_pred HHHH---------HHHCCCcccccccccccchhhhhccCCcCCCccCCCCchhcceeEEEEEeeCCC
Q 009304 89 IIGE---------SAKAGLALPYTPYWWGLTIGGLIGTGAHGSSLWGRGSSIHDYVVELRIVSSGGP 146 (538)
Q Consensus 89 L~~~---------l~~~Gl~l~~~~~~~~~tvGG~i~tg~hGs~~~~~~G~~~d~V~~l~vV~~~G~ 146 (538)
|.+. |.++-..+...+--+..|+||.|+++..-+.+. ..+...=-.++++.++|+
T Consensus 77 l~~~~~~~~~~p~L~~~~~~ias~~IRn~aTiGGNl~~~~~~sD~~---~~Llal~A~v~i~~~~g~ 140 (171)
T PF00941_consen 77 LEESPLIQQYFPALAQAARRIASPQIRNRATIGGNLCNASPASDLA---PALLALDARVEIASPDGT 140 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHCTSS-HHHHTT-BHHHHHHHTBTT-SHH---HHHHHTT-EEEEEETTEE
T ss_pred HhhcchhhhhHHHHHHHHHHhCCHhHeeeeeeccccccCcccccHH---HHHHHhCcEEEEEcCCee
Confidence 9886 111111121111123479999998777654432 122222234566666664
No 37
>PRK09799 putative oxidoreductase; Provisional
Probab=96.93 E-value=0.0027 Score=63.60 Aligned_cols=102 Identities=15% Similarity=0.104 Sum_probs=66.5
Q ss_pred EEEeCCCHHHHHHHHHHHHHcCCceEEEeCCCCCCCCCCccCCCCcEEEEcCCCCCeeEEeCCCCEEEEeCCCCHHHHHH
Q 009304 12 DVAYPTSEQEIISVVSAATIAKRKMKVATRFSHSIPKLVCPDGQDGLLISTKYLNKIINIDTEAMTITMESGVTLRQIIG 91 (538)
Q Consensus 12 ~v~~P~s~~el~~~v~~a~~~~~~v~v~~ggghS~~~~~~~~~~~gv~Idl~~ln~v~~vd~~~~~vtv~aGv~l~~L~~ 91 (538)
.++.|+|.+|+.++++. ++-..+++ .||.+..... ......++||++++ .+-.|..+.+.++++|++|+.+|.+
T Consensus 4 ~y~~P~sl~Ea~~ll~~---~~~~a~il-AGGT~L~~~~-~~~~~~~lIdi~~i-eL~~I~~~~~~l~IGA~vT~~~l~~ 77 (258)
T PRK09799 4 QFFRPDSVEQALELKRR---YQDEAVWF-AGGSKLNATP-TRTDKKIAISLQDL-ELDWIEWDNGALRIGAMSRLQPLRD 77 (258)
T ss_pred cEeCCCCHHHHHHHHHh---CCCCCEEE-ecCCChHhhh-CCCCCCEEEEcCCC-CCCeEEecCCEEEEccCCcHHHHHh
Confidence 57899999999998874 33235677 5666542211 11223689999987 6556677778999999999999987
Q ss_pred HHHHC-CCc--cc--ccccc-cccchhhhhccCC
Q 009304 92 ESAKA-GLA--LP--YTPYW-WGLTIGGLIGTGA 119 (538)
Q Consensus 92 ~l~~~-Gl~--l~--~~~~~-~~~tvGG~i~tg~ 119 (538)
...-. .|. +. ..+.+ +-.||||.|+++.
T Consensus 78 ~~~~~~~L~~a~~~vas~qIRN~aTiGGNl~~a~ 111 (258)
T PRK09799 78 ARFIPAALREALGFVYSRHLRNQSTIGGEIAARQ 111 (258)
T ss_pred CcccHHHHHHHHHHhCCHHHhccchhHHHhhcCC
Confidence 53211 111 11 11222 3469999999664
No 38
>TIGR03312 Se_sel_red_FAD probable selenate reductase, FAD-binding subunit. This protein is suggested by Bebien, et al., to be the FAD-binding subunit of a molydbopterin-containing selenate reductase. Our comparative genomics suggests it to be a subunit of a selenium-dependent molybdenum hydroxylase for an unknown substrate.
Probab=96.60 E-value=0.007 Score=60.60 Aligned_cols=101 Identities=15% Similarity=0.085 Sum_probs=65.3
Q ss_pred EEEeCCCHHHHHHHHHHHHHcCCceEEEeCCCCCCCCCCccCCCCcEEEEcCCCCCeeEEeCCCCEEEEeCCCCHHHHHH
Q 009304 12 DVAYPTSEQEIISVVSAATIAKRKMKVATRFSHSIPKLVCPDGQDGLLISTKYLNKIINIDTEAMTITMESGVTLRQIIG 91 (538)
Q Consensus 12 ~v~~P~s~~el~~~v~~a~~~~~~v~v~~ggghS~~~~~~~~~~~gv~Idl~~ln~v~~vd~~~~~vtv~aGv~l~~L~~ 91 (538)
.++.|+|.+|+.++++. .+-.-+++ .||++...... .....++||+.++ .+-.|..+.+.++++|++|+.+|.+
T Consensus 3 ~y~~P~sl~Ea~~ll~~---~~~~a~~l-AGGTdL~~~~~-~~~~~~lIdl~~i-eL~~I~~~~~~l~IGA~~t~~~l~~ 76 (257)
T TIGR03312 3 QFFRPESTIQALELKKR---HTGVAVWF-AGGSKLNATPT-RTDKKVAISLDKL-ALDKIELQGGALHIGAMCHLQSLID 76 (257)
T ss_pred ceECCCCHHHHHHHHHh---CCCCCEEE-ecCcchhhhhc-ccCCCEEEEcCCC-CCCcEEecCCEEEEEeCCcHHHHHh
Confidence 47899999999998774 22234567 67776532111 1123589999887 6556666778999999999999876
Q ss_pred HH------HHCCCcccccccc-cccchhhhhccCC
Q 009304 92 ES------AKAGLALPYTPYW-WGLTIGGLIGTGA 119 (538)
Q Consensus 92 ~l------~~~Gl~l~~~~~~-~~~tvGG~i~tg~ 119 (538)
.. .+.=..+ ..+.+ +-.|+||.|+++.
T Consensus 77 ~~~~~~~L~~aa~~v-a~~qIRN~gTlGGNl~~a~ 110 (257)
T TIGR03312 77 NELTPAALKEALGFV-YSRHIRNQATIGGEIAAFQ 110 (257)
T ss_pred CcchHHHHHHHHHHh-CCHHHhccccHHHHhhcCC
Confidence 32 1110011 12222 3479999998654
No 39
>PF09265 Cytokin-bind: Cytokinin dehydrogenase 1, FAD and cytokinin binding; InterPro: IPR015345 This domain adopts an alpha+beta sandwich structure with an antiparallel beta-sheet, in a ferredoxin-like fold. It is predominantly found in plant cytokinin dehydrogenase 1, where it is capable of binding both FAD and cytokinin substrates. The substrate displays a 'plug-into-socket' binding mode that seals the catalytic site and precisely positions the carbon atom undergoing oxidation in close contact with the reactive locus of the flavin []. ; GO: 0019139 cytokinin dehydrogenase activity, 0050660 flavin adenine dinucleotide binding, 0009690 cytokinin metabolic process, 0055114 oxidation-reduction process; PDB: 2EXR_A 2Q4W_A 3S1E_A 1W1Q_A 2QPM_A 3C0P_A 3BW7_A 3S1C_A 1W1S_A 2QKN_A ....
Probab=96.49 E-value=0.0047 Score=62.09 Aligned_cols=130 Identities=22% Similarity=0.337 Sum_probs=67.9
Q ss_pred cccccCCCCCCccEEEEEEEEeccchHHHHHHHHHHHHhCcccccCceeecceEEEEecCCC--CCCC---CCCCeEEEE
Q 009304 329 TACAWDPRIKGEFFHQTTFSIRLSVVKSFIDDIQKLIKLEPKALCGLELYNGILMRYVKASS--AYLG---KQEDSLDFD 403 (538)
Q Consensus 329 ~~~~w~~r~~~~~~~~~E~~vP~~~~~~~i~dv~~l~~~~~~~~~~~~~~~pi~iRfv~~s~--a~Ls---~~~d~~~i~ 403 (538)
....|+..+ .. ...+||-+++.+|.+.|.+-+-.+ . ....||++--+..+. .-+| |.++.+| -
T Consensus 133 ~~G~WdvPH---PW--lnlfvP~s~i~dF~~~V~~~il~~-~-----~~~GpiLvYP~~~~kwd~~~s~v~Pde~vfy-l 200 (281)
T PF09265_consen 133 SKGLWDVPH---PW--LNLFVPKSRIEDFDRGVFKGILKD-D-----GNSGPILVYPLNRSKWDTRMSAVIPDEDVFY-L 200 (281)
T ss_dssp HCTTSSS---------EEEEEEHHHHHHHHHHCCCCCTTT-S------S-SEEEEEEEEGGGS-TTSS----SSSEEE-E
T ss_pred hcCCccccC---cc--eeeecchHHHHHHHHHHHHHhhcc-C-----CCCceEEEEEecccccCCCCcccCCCCCeEE-E
Confidence 356777331 11 568999999999998875433111 1 122467776666553 3333 3555544 3
Q ss_pred EeEeccCCCC-CccchHHHHHHHHHHH--H--hhcCC---eeccCCCCCcchhhHHHhC-CCHHHHHHHHHhcCCCCCCC
Q 009304 404 ITYYRSKDPM-TPRLYEDILEEIEQLA--V--FKYGG---FPHWGKNRNLVFDGVIKKY-KNAGEFFKVKDKYDPLGLFS 474 (538)
Q Consensus 404 i~~y~~~~~~-~p~~~~~~~~eie~~~--~--~k~gG---rPHWgK~~~~~~~~~~~~Y-p~~~~F~~~r~~~DP~g~F~ 474 (538)
|-.+++..|. .+...+.+.++=.+|+ . ..+|| .||| .+.++.++-| ++|.+|.+.|++|||.++++
T Consensus 201 v~lLrsa~P~~~~~~l~~l~~qN~~il~~c~~agi~~k~Yl~~~-----~t~~dW~~HFG~~W~~f~~~K~~yDP~~IL~ 275 (281)
T PF09265_consen 201 VALLRSADPSDGPDDLERLLEQNRRILEFCRKAGIGGKQYLPHY-----TTQEDWRRHFGPKWERFVERKRRYDPKAILA 275 (281)
T ss_dssp EEEEE---TTSSCCHHHHHHHHHHHHHHHHHHTT--EEESS--------SSHHHHHHHHGHHHHHHHHHHHHH-TT--B-
T ss_pred EEEeCCCCCCCCchhHHHHHHHHHHHHHHHHHcCCceEECCCCC-----CCHHHHHHHhchHHHHHHHHHHhCCchhhcC
Confidence 3344443221 2223333333222221 2 22345 5666 7788899888 89999999999999999987
Q ss_pred c
Q 009304 475 S 475 (538)
Q Consensus 475 n 475 (538)
.
T Consensus 276 P 276 (281)
T PF09265_consen 276 P 276 (281)
T ss_dssp G
T ss_pred C
Confidence 4
No 40
>TIGR02963 xanthine_xdhA xanthine dehydrogenase, small subunit. Members of this protein family are the small subunit (or, in eukaryotes, the N-terminal domain) of xanthine dehydrogenase, an enzyme of purine catabolism via urate. The small subunit contains both an FAD and a 2Fe-2S cofactor. Aldehyde oxidase (retinal oxidase) appears to have arisen as a neofunctionalization among xanthine dehydrogenases in eukaryotes and
Probab=95.99 E-value=0.03 Score=60.86 Aligned_cols=105 Identities=18% Similarity=0.142 Sum_probs=68.9
Q ss_pred cCEEEeCCCHHHHHHHHHHHHHcCCceEEEeCCCCCCC-CCCccCCCCcEEEEcCCCCCeeEEeCCCCEEEEeCCCCHHH
Q 009304 10 AADVAYPTSEQEIISVVSAATIAKRKMKVATRFSHSIP-KLVCPDGQDGLLISTKYLNKIINIDTEAMTITMESGVTLRQ 88 (538)
Q Consensus 10 p~~v~~P~s~~el~~~v~~a~~~~~~v~v~~ggghS~~-~~~~~~~~~gv~Idl~~ln~v~~vd~~~~~vtv~aGv~l~~ 88 (538)
...++.|+|.+|+.++++.- . ..+++ .||.+.. ........-..+||++++..+-.|..+.+.++++|++++.+
T Consensus 192 ~~~~~~P~sl~Ea~~ll~~~---~-~a~lv-AGGTdl~~~~~~~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vT~~e 266 (467)
T TIGR02963 192 GERFIAPTTLDDLAALKAAH---P-DARIV-AGSTDVGLWVTKQMRDLPDVIYVGQVAELKRIEETDDGIEIGAAVTLTD 266 (467)
T ss_pred CceEECCCCHHHHHHHHhhC---C-CCEEE-ecCcchHHHHhcCCCCCCeEEECCCChhhccEEEcCCEEEEecCCcHHH
Confidence 45789999999999998752 2 34566 4555431 11111122368999998766555666678999999999999
Q ss_pred HHHHHHHC--CC--ccccc--ccc-cccchhhhhccCC
Q 009304 89 IIGESAKA--GL--ALPYT--PYW-WGLTIGGLIGTGA 119 (538)
Q Consensus 89 L~~~l~~~--Gl--~l~~~--~~~-~~~tvGG~i~tg~ 119 (538)
+.+.+.++ .| ++... +.+ +..||||.|+++.
T Consensus 267 l~~~l~~~~p~L~~a~~~ias~qIRN~aTiGGNI~~as 304 (467)
T TIGR02963 267 AYAALAKRYPELGELLRRFASLQIRNAGTLGGNIANGS 304 (467)
T ss_pred HHHHHHHHhHHHHHHHHHhCCHHHcCceecccccccCC
Confidence 98766543 11 11111 222 3479999998754
No 41
>PF02913 FAD-oxidase_C: FAD linked oxidases, C-terminal domain; InterPro: IPR004113 Some oxygen-dependent oxidoreductases are flavoproteins that contain a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. The region around the histidine that binds the FAD group is conserved in these enzymes (see IPR006093 from INTERPRO).; GO: 0003824 catalytic activity, 0050660 flavin adenine dinucleotide binding; PDB: 1WVE_B 1DII_B 1WVF_A 1DIQ_A 2UUU_B 2UUV_A 1W1M_A 1E8H_B 1E0Y_B 1DZN_B ....
Probab=95.56 E-value=0.016 Score=56.70 Aligned_cols=115 Identities=18% Similarity=0.317 Sum_probs=68.3
Q ss_pred ccEEEEEEEEeccchHHHHHHHHHHHHhCcccccCceeecceEEEEecCCCCCCCCCCCeEEEEEeEeccCCCCCccchH
Q 009304 340 EFFHQTTFSIRLSVVKSFIDDIQKLIKLEPKALCGLELYNGILMRYVKASSAYLGKQEDSLDFDITYYRSKDPMTPRLYE 419 (538)
Q Consensus 340 ~~~~~~E~~vP~~~~~~~i~dv~~l~~~~~~~~~~~~~~~pi~iRfv~~s~a~Ls~~~d~~~i~i~~y~~~~~~~p~~~~ 419 (538)
......+.+||.+++.+++++++++++.... ....|.... ...+.+.+.+-. .++..+...+
T Consensus 126 ~~~~~~dv~vp~~~l~~~~~~~~~~~~~~~~----------~~~~~gH~~-------~g~~h~~~~~~~-~~~~~~~~~~ 187 (248)
T PF02913_consen 126 PVWDTEDVAVPPSRLPEFLREIRALLREYGL----------EVCHFGHAG-------DGNLHLYILFDP-RDPEEPERAE 187 (248)
T ss_dssp EEEEEEEEESCHHHHHHHHHHHHHHHHHCTE----------EEEEEEEEE-------ECEEEEEEEEET-TSHHHHHHHH
T ss_pred CceeeeeecccchhhhhHHHhhhhhhhhccc----------cccceEEcc-------CCeEEEEeeccc-chHHHHHHHH
Confidence 3445689999999999999999999997542 111222111 234455555432 2223333456
Q ss_pred HHHHHHHHHHHhhcCCeeccCCCCCcchh---hHHHhCC--CHHHHHHHHHhcCCCCCCCc
Q 009304 420 DILEEIEQLAVFKYGGFPHWGKNRNLVFD---GVIKKYK--NAGEFFKVKDKYDPLGLFSS 475 (538)
Q Consensus 420 ~~~~eie~~~~~k~gGrPHWgK~~~~~~~---~~~~~Yp--~~~~F~~~r~~~DP~g~F~n 475 (538)
.+++++-+. +.++||-+-= .|..... .+...|+ .+.-+.++|+.+||+|++..
T Consensus 188 ~~~~~~~~~-~~~~gG~is~--eHG~G~~k~~~~~~~~~~~~~~~~~~iK~~~DP~~ilNP 245 (248)
T PF02913_consen 188 ALWDELYEL-VLELGGSISA--EHGIGKLKKPYLEEEYGPAALRLMRAIKQAFDPNGILNP 245 (248)
T ss_dssp HHHHHHHHH-HHHTT-BBSS--SSGGGHHHHHHHCHHCHHHHHHHHHHHHHHH-TTS-BST
T ss_pred HHHHHHHHH-HHhccccccc--ccchhhhhHHHHHHhcchHHHHHHHHhhhccCCccCCCC
Confidence 677778776 5799995431 1111111 1223453 58899999999999999864
No 42
>PF08031 BBE: Berberine and berberine like ; InterPro: IPR012951 This domain is found in the berberine bridge and berberine bridge-like enzymes, which are involved in the biosynthesis of numerous isoquinoline alkaloids. They catalyse the transformation of the N-methyl group of (S)-reticuline into the C-8 berberine bridge carbon of (S)-scoulerine [].; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 2IPI_A 2Y3S_A 2Y3R_D 2Y08_B 2Y4G_A 3D2H_A 3FW9_A 3FW8_A 3FWA_A 3D2J_A ....
Probab=95.45 E-value=0.0088 Score=43.48 Aligned_cols=29 Identities=28% Similarity=0.394 Sum_probs=20.8
Q ss_pred hHHHhC--CCHHHHHHHHHhcCCCCCCCchh
Q 009304 449 GVIKKY--KNAGEFFKVKDKYDPLGLFSSEW 477 (538)
Q Consensus 449 ~~~~~Y--p~~~~F~~~r~~~DP~g~F~n~~ 477 (538)
++.+.| .++++.+++|++|||+++|.+..
T Consensus 14 ~~~~~yyg~n~~rL~~iK~~yDP~n~F~~~q 44 (47)
T PF08031_consen 14 DWQEAYYGENYDRLRAIKRKYDPDNVFRFPQ 44 (47)
T ss_dssp HHHHHHHGGGHHHHHHHHHHH-TT-TS-STT
T ss_pred HHHHHHhchhHHHHHHHHHHhCccceeCCCC
Confidence 344444 79999999999999999998753
No 43
>TIGR03195 4hydrxCoA_B 4-hydroxybenzoyl-CoA reductase, beta subunit. This model represents the second largest chain, beta, of the enzyme 4-hydroxybenzoyl-CoA reductase. In species capable of degrading various aromatic compounds by way of benzoyl-CoA, this enzyme can convert 4-hydroxybenzoyl-CoA to benzoyl-CoA.
Probab=95.35 E-value=0.026 Score=58.21 Aligned_cols=105 Identities=20% Similarity=0.211 Sum_probs=64.9
Q ss_pred cCEEEeCCCHHHHHHHHHHHHHcCCceEEEeCCCCCC-CCCCccCCCCcEEEEcCCCCCeeEEeCCCCEEEEeCCCCHHH
Q 009304 10 AADVAYPTSEQEIISVVSAATIAKRKMKVATRFSHSI-PKLVCPDGQDGLLISTKYLNKIINIDTEAMTITMESGVTLRQ 88 (538)
Q Consensus 10 p~~v~~P~s~~el~~~v~~a~~~~~~v~v~~ggghS~-~~~~~~~~~~gv~Idl~~ln~v~~vd~~~~~vtv~aGv~l~~ 88 (538)
+-.++.|+|.+|..++++.. + .-+++ .||.+. ..+......-..+||+.++..+-.|+.+.+.++++|+||+.+
T Consensus 4 ~f~~~~P~sl~eA~~ll~~~---~-~a~iv-aGGTdl~~~~~~~~~~p~~lIdi~~I~eL~~I~~~~~~l~IGA~vT~~~ 78 (321)
T TIGR03195 4 DFRTLRPASLADAVAALAAH---P-AARPL-AGGTDLLPNLRRGLGQPETLVDLTGIDEIAQLSTLADGLRIGAGVTLAA 78 (321)
T ss_pred CceEECCCCHHHHHHHHhhC---C-CCEEE-EccchHHHHHhcccCCCCeEEECCCChhhccEEecCCEEEEeccCcHHH
Confidence 34689999999999988753 2 24566 455542 111111112268999998765555666678899999999999
Q ss_pred HHHH--HHHCC--C--cc--cccccc-cccchhhhhccCC
Q 009304 89 IIGE--SAKAG--L--AL--PYTPYW-WGLTIGGLIGTGA 119 (538)
Q Consensus 89 L~~~--l~~~G--l--~l--~~~~~~-~~~tvGG~i~tg~ 119 (538)
|.+. +.+.- | ++ -..+.+ +-.||||.|++.+
T Consensus 79 l~~~~~i~~~~p~L~~a~~~ias~qIRN~aTiGGNi~~~~ 118 (321)
T TIGR03195 79 LAEDALVRTRWPALAQAARAVAGPTHRAAATLGGNLCLDT 118 (321)
T ss_pred HhhChhhHhHhHHHHHHHHHhCCHHHhCceecHHhhhccC
Confidence 9663 11110 0 00 012222 3369999999754
No 44
>PRK09971 xanthine dehydrogenase subunit XdhB; Provisional
Probab=95.20 E-value=0.023 Score=57.92 Aligned_cols=103 Identities=22% Similarity=0.184 Sum_probs=64.8
Q ss_pred EEEeCCCHHHHHHHHHHHHHcCCceEEEeCCCCCCC-CCCccCCCCcEEEEcCCCCCeeEEeC-CCCEEEEeCCCCHHHH
Q 009304 12 DVAYPTSEQEIISVVSAATIAKRKMKVATRFSHSIP-KLVCPDGQDGLLISTKYLNKIINIDT-EAMTITMESGVTLRQI 89 (538)
Q Consensus 12 ~v~~P~s~~el~~~v~~a~~~~~~v~v~~ggghS~~-~~~~~~~~~gv~Idl~~ln~v~~vd~-~~~~vtv~aGv~l~~L 89 (538)
.++.|+|.+|+.++++.- . ..+++ +||.+.. .+......-..+||++++..+-.|.. +++.++++|++|+.+|
T Consensus 6 ~~~~P~sl~Ea~~ll~~~---~-~a~iv-aGGTdl~~~~~~~~~~p~~lIdl~~i~eL~~I~~~~~~~l~IGA~vt~~~l 80 (291)
T PRK09971 6 EYHEAATLEEAIELLADN---P-QAKLI-AGGTDVLIQLHHHNDRYRHLVSIHNIAELRGITLAEDGSIRIGAATTFTQI 80 (291)
T ss_pred ceeCCCCHHHHHHHHHhC---C-CCEEE-eccchHHHHHhCCCCCCCeEEEcCCChhhhCeEecCCCEEEEEeCCcHHHH
Confidence 689999999999998752 2 35667 5665531 11111112268999998766555663 4568999999999999
Q ss_pred HH--HHHHCC----Cccc--ccccc-cccchhhhhccCC
Q 009304 90 IG--ESAKAG----LALP--YTPYW-WGLTIGGLIGTGA 119 (538)
Q Consensus 90 ~~--~l~~~G----l~l~--~~~~~-~~~tvGG~i~tg~ 119 (538)
.+ .+.+.- .++. ..+.+ +..||||.|+++.
T Consensus 81 ~~~~~i~~~~p~L~~a~~~ia~~qIRN~aTiGGNi~~a~ 119 (291)
T PRK09971 81 IEDPIIQKHLPALAEAAVSIGGPQIRNVATIGGNICNGA 119 (291)
T ss_pred hcChHHHHHhHHHHHHHHHhCCHHHhcceecccccccCC
Confidence 86 222211 0111 11222 3479999998755
No 45
>TIGR03199 pucC xanthine dehydrogenase C subunit. This gene has been characterized in B. subtilis as the FAD binding-subunit of xanthine dehydrogenase (pucC), acting in conjunction with pucD, the molybdopterin-binding subunit and pucE, the FeS-binding subunit.
Probab=94.95 E-value=0.028 Score=56.50 Aligned_cols=98 Identities=20% Similarity=0.176 Sum_probs=62.8
Q ss_pred CCCHHHHHHHHHHHHHcCCceEEEeCCCCCCCCCCccC--CCCcEEEEcCCCCCeeEEeCCCCEEEEeCCCCHHHHHHH-
Q 009304 16 PTSEQEIISVVSAATIAKRKMKVATRFSHSIPKLVCPD--GQDGLLISTKYLNKIINIDTEAMTITMESGVTLRQIIGE- 92 (538)
Q Consensus 16 P~s~~el~~~v~~a~~~~~~v~v~~ggghS~~~~~~~~--~~~gv~Idl~~ln~v~~vd~~~~~vtv~aGv~l~~L~~~- 92 (538)
|+|.+|+.++++.. + ..+++ .||.+.......+ .....+||++++..+-.|+.+.+.++++|++|+.+|.+.
T Consensus 1 P~sl~ea~~ll~~~---~-~a~iv-aGgT~l~~~~~~~~~~~~~~lIdi~~i~eL~~I~~~~~~l~IGA~vt~~~l~~~~ 75 (264)
T TIGR03199 1 PAALDEAWSLLEKA---P-DSTFV-SGSTLLQLQWEKGTLPMKQHLVSLEGIDELKGISTSDTHVSIGALTTLNECRKNP 75 (264)
T ss_pred CCCHHHHHHHHHhC---C-CCEEE-EccChHHHHHhcCcCCCCCeEEEcCCChhhCcEEecCCEEEEecCCcHHHHhhCh
Confidence 89999999999863 1 34667 4555532111111 112689999998777777778899999999999999752
Q ss_pred -HHHC--CC--cccc--cccc-cccchhhhhccC
Q 009304 93 -SAKA--GL--ALPY--TPYW-WGLTIGGLIGTG 118 (538)
Q Consensus 93 -l~~~--Gl--~l~~--~~~~-~~~tvGG~i~tg 118 (538)
+.++ .| ++.. .+.+ +..|+||.|+++
T Consensus 76 ~i~~~~p~L~~a~~~ia~~qIRN~aTlGGNl~~~ 109 (264)
T TIGR03199 76 LIKRALPCFVDAASAIAAPGVRNRATIGGNIASG 109 (264)
T ss_pred HhHhHhHHHHHHHHHhcCHHHhcceecHHhccCc
Confidence 1111 01 1111 1222 337999999876
No 46
>PLN02906 xanthine dehydrogenase
Probab=93.67 E-value=0.33 Score=59.43 Aligned_cols=104 Identities=18% Similarity=0.116 Sum_probs=68.3
Q ss_pred CEEEeCCCHHHHHHHHHHHHHcCCceEEEeCCCCCCCC-CCccCCCCcEEEEcCCCCCeeEEeCCCCEEEEeCCCCHHHH
Q 009304 11 ADVAYPTSEQEIISVVSAATIAKRKMKVATRFSHSIPK-LVCPDGQDGLLISTKYLNKIINIDTEAMTITMESGVTLRQI 89 (538)
Q Consensus 11 ~~v~~P~s~~el~~~v~~a~~~~~~v~v~~ggghS~~~-~~~~~~~~gv~Idl~~ln~v~~vd~~~~~vtv~aGv~l~~L 89 (538)
..++.|+|.+|+.++++.- . ..+++ .||.+... +......-.++||++++..+-.|..+...++++|++++.+|
T Consensus 229 ~~~~~P~tl~ea~~ll~~~---~-~a~iv-AGGTdl~~~~~~~~~~~~~lIdi~~I~eL~~I~~~~~~l~IGA~vT~~el 303 (1319)
T PLN02906 229 LTWYRPTSLQHLLELKAEY---P-DAKLV-VGNTEVGIEMRFKNAQYPVLISPTHVPELNAIKVKDDGLEIGAAVRLSEL 303 (1319)
T ss_pred ceEECcCCHHHHHHHHHhC---C-CCEEE-EcCchhHHHhhhccCCCCeEEECCCChhhhcEEecCCEEEEecCCcHHHH
Confidence 4588999999999987753 1 24566 45554311 11111223689999997766667777789999999999999
Q ss_pred HHHHHHCCC--------cccc---------cccc-cccchhhhhccCC
Q 009304 90 IGESAKAGL--------ALPY---------TPYW-WGLTIGGLIGTGA 119 (538)
Q Consensus 90 ~~~l~~~Gl--------~l~~---------~~~~-~~~tvGG~i~tg~ 119 (538)
.+.|.+.=. .+|. .+.+ +..||||.|+++.
T Consensus 304 ~~~l~~~i~~~~~~~~~~~p~L~~~~~~ias~qIRN~aTiGGNI~~as 351 (1319)
T PLN02906 304 QNLFRKVVKERPAHETSACKAFIEQLKWFAGTQIRNVASIGGNICTAS 351 (1319)
T ss_pred HHHHHHHhhhcchhhhHHHHHHHHHHHHhCCHhhcCceechhhhccCC
Confidence 987544310 1111 1222 3379999998765
No 47
>TIGR02969 mam_aldehyde_ox aldehyde oxidase. Members of this family are mammalian aldehyde oxidase (EC 1.2.3.1) isozymes, closely related to xanthine dehydrogenase/oxidase.
Probab=93.04 E-value=0.36 Score=59.12 Aligned_cols=108 Identities=16% Similarity=0.116 Sum_probs=70.7
Q ss_pred CEEEeCCCHHHHHHHHHHHHHcCCceEEEeCCCCCCCC-CCccCCCCcEEEEcCCCCCeeEEeCCCCEEEEeCCCCHHHH
Q 009304 11 ADVAYPTSEQEIISVVSAATIAKRKMKVATRFSHSIPK-LVCPDGQDGLLISTKYLNKIINIDTEAMTITMESGVTLRQI 89 (538)
Q Consensus 11 ~~v~~P~s~~el~~~v~~a~~~~~~v~v~~ggghS~~~-~~~~~~~~gv~Idl~~ln~v~~vd~~~~~vtv~aGv~l~~L 89 (538)
..++.|+|.+|+.++++.. . ..+++ .||.+... .......-..+||++++..+-.|..+...++++|++++.+|
T Consensus 237 ~~~~~P~tl~ea~~ll~~~---~-~a~lv-AGGTdl~~~~k~~~~~~~~lIdi~~I~EL~~i~~~~~~l~IGA~vT~~el 311 (1330)
T TIGR02969 237 MMWISPVTLKELLEAKFKY---P-QAPVV-MGNTSVGPEVKFKGVFHPVIISPDRIEELSVVNHTGDGLTLGAGLSLAQV 311 (1330)
T ss_pred ceEECCCCHHHHHHHHHhC---C-CCEEE-ecCcchHHHhhhccCCCCeEEECCCChhhhcEEEcCCEEEEeccccHHHH
Confidence 4689999999999998753 2 34566 45554321 11111122589999997776667777789999999999999
Q ss_pred HHHHHHC---------C----C--cccc--cccc-cccchhhhhccCCcCCC
Q 009304 90 IGESAKA---------G----L--ALPY--TPYW-WGLTIGGLIGTGAHGSS 123 (538)
Q Consensus 90 ~~~l~~~---------G----l--~l~~--~~~~-~~~tvGG~i~tg~hGs~ 123 (538)
.+.|.+. . | ++.. .+.+ +..||||.|+++..-+.
T Consensus 312 ~~~l~~~i~~~p~~~~~~~p~L~~a~~~ias~qIRN~gTlGGNi~~asP~sD 363 (1330)
T TIGR02969 312 KDILADVVQKLPEETTQTYRALLKHLGTLAGSQIRNMASLGGHIISRHLDSD 363 (1330)
T ss_pred HHHHHHhhhcCchhhhHHHHHHHHHHHHhCChhhcccccchhhcccCCCchh
Confidence 9875532 0 1 0111 1222 33699999998875543
No 48
>PLN00192 aldehyde oxidase
Probab=93.00 E-value=0.27 Score=60.30 Aligned_cols=108 Identities=13% Similarity=0.083 Sum_probs=70.0
Q ss_pred cCEEEeCCCHHHHHHHHHHHHHcCCceEEEeCCCCCCCCCCccCCCCcEEEEcCCCCCeeEEeCCCCEEEEeCCCCHHHH
Q 009304 10 AADVAYPTSEQEIISVVSAATIAKRKMKVATRFSHSIPKLVCPDGQDGLLISTKYLNKIINIDTEAMTITMESGVTLRQI 89 (538)
Q Consensus 10 p~~v~~P~s~~el~~~v~~a~~~~~~v~v~~ggghS~~~~~~~~~~~gv~Idl~~ln~v~~vd~~~~~vtv~aGv~l~~L 89 (538)
...++.|+|.+|+.++++.....+-..+++ .||.+.... .....-.++||++++..+-.|..+.+.++++|++++.++
T Consensus 233 ~~~~~~P~sl~ea~~ll~~~~~~~~~a~lv-AGgTdl~~~-k~~~~p~~lIdi~~I~EL~~I~~~~~~l~IGA~vTl~el 310 (1344)
T PLN00192 233 RYRWYTPVSVEELQSLLESNNFDGVSVKLV-VGNTGTGYY-KDEELYDKYIDIRHIPELSMIRRDEKGIEIGAVVTISKA 310 (1344)
T ss_pred CceEECcCCHHHHHHHHHhCCCCCCCeEEE-EeCCcceee-eccCCCCeEEEcCCChhhhcEEecCCEEEEeecCcHHHH
Confidence 356899999999999987531011235566 455443212 111122689999987766667777789999999999999
Q ss_pred HHHHHHCCC---cccc-------c--ccc-cccchhhhhccCC
Q 009304 90 IGESAKAGL---ALPY-------T--PYW-WGLTIGGLIGTGA 119 (538)
Q Consensus 90 ~~~l~~~Gl---~l~~-------~--~~~-~~~tvGG~i~tg~ 119 (538)
.+.+...-+ .+|. . +.+ +..||||.|+++.
T Consensus 311 ~~~l~~~~~~~~~~p~L~~~~~~vAs~qIRN~aTlGGNI~~As 353 (1344)
T PLN00192 311 IEALREESKSEYVFKKIADHMEKIASRFVRNTGSIGGNLVMAQ 353 (1344)
T ss_pred HHHHHhhccccchHHHHHHHHHHhcChhhccceechhhhcccC
Confidence 987765421 1121 1 122 2369999999874
No 49
>COG4630 XdhA Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A [Nucleotide transport and metabolism]
Probab=92.85 E-value=0.27 Score=50.82 Aligned_cols=125 Identities=17% Similarity=0.105 Sum_probs=73.2
Q ss_pred cCEEEeCCCHHHHHHHHHHHHHcCCceEEEeCCCCCCCCCCccC--CCCcEEEEcCCCCCeeEEeCCCCEEEEeCCCCHH
Q 009304 10 AADVAYPTSEQEIISVVSAATIAKRKMKVATRFSHSIPKLVCPD--GQDGLLISTKYLNKIINIDTEAMTITMESGVTLR 87 (538)
Q Consensus 10 p~~v~~P~s~~el~~~v~~a~~~~~~v~v~~ggghS~~~~~~~~--~~~gv~Idl~~ln~v~~vd~~~~~vtv~aGv~l~ 87 (538)
....+.|.+.+|+..++..- -+.+++- |+-. .++..+. -+-..+|-...+..+-.|+...+.++++||+++.
T Consensus 203 ~~r~~~P~~l~D~a~l~aa~----P~AtivA-GsTD-vgLwVtk~mr~l~~vi~v~~l~eL~~i~~~~~~l~iGAgvt~t 276 (493)
T COG4630 203 DDRFIVPATLADFADLLAAH----PGATIVA-GSTD-VGLWVTKQMRDLNPVIFVGHLAELRRIEVSTGGLEIGAGVTYT 276 (493)
T ss_pred CceeEeeccHHHHHHHHhhC----CCCEEEe-cCcc-hhhHHHHHHhhcCCeEEecchhhhheeeecCCcEEEccCccHH
Confidence 45689999999999988642 2456662 3322 2332221 0113345445555555677788999999999999
Q ss_pred HHHHHHHHCCCcc----ccccc---ccccchhhhhccCCc-CCCccCCCCchhcceeEEEEEeeCCC
Q 009304 88 QIIGESAKAGLAL----PYTPY---WWGLTIGGLIGTGAH-GSSLWGRGSSIHDYVVELRIVSSGGP 146 (538)
Q Consensus 88 ~L~~~l~~~Gl~l----~~~~~---~~~~tvGG~i~tg~h-Gs~~~~~~G~~~d~V~~l~vV~~~G~ 146 (538)
|....|..+=-.| +-.++ -+-.||||.|++|+- |-+. -.=..++.++++-.|+
T Consensus 277 ~a~~~la~~~P~l~~L~~r~gg~qvRN~gTlGGNIangSPIGDtP------PaLIALgA~ltLr~g~ 337 (493)
T COG4630 277 QAYRALAGRYPALGELWDRFGGEQVRNMGTLGGNIANGSPIGDTP------PALIALGATLTLRSGD 337 (493)
T ss_pred HHHHHHHhhCchHHHHHHHhcchhhhccccccccccCCCcCCCCC------chhhhcCcEEEEEecC
Confidence 9999998642111 11111 122489999987762 3211 1123455566665554
No 50
>COG1319 CoxM Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion]
Probab=92.52 E-value=1.1 Score=45.32 Aligned_cols=156 Identities=19% Similarity=0.162 Sum_probs=88.7
Q ss_pred cCEEEeCCCHHHHHHHHHHHHHcCCceEEEeCCCCCCCCCCccC-CCCcEEEEcCCCCC-eeEEeCCCCEEEEeCCCCHH
Q 009304 10 AADVAYPTSEQEIISVVSAATIAKRKMKVATRFSHSIPKLVCPD-GQDGLLISTKYLNK-IINIDTEAMTITMESGVTLR 87 (538)
Q Consensus 10 p~~v~~P~s~~el~~~v~~a~~~~~~v~v~~ggghS~~~~~~~~-~~~gv~Idl~~ln~-v~~vd~~~~~vtv~aGv~l~ 87 (538)
+-.+++|.|++|...+++... ..+++ .||+++..+.-.. ..-..+||+.++.. ...+..+.+.++++|-+++.
T Consensus 3 ~f~y~rp~Sv~eA~~ll~~~~----~a~~l-aGGt~L~~~~k~~~~~p~~lVdI~~l~~~~~~~~~~g~~l~IGA~vt~~ 77 (284)
T COG1319 3 NFEYYRPASVEEALNLLARAP----DAKYL-AGGTDLLPLMKLGIERPDHLVDINGLDELLGIVTTEGGSLRIGALVTLT 77 (284)
T ss_pred ceEEECCCCHHHHHHHHHhCC----CcEEe-eCcchHHHHhhcccCCcceEEEecCChhhhceEeecCCEEEEeecccHH
Confidence 567899999999998887443 34667 6888754332111 12267999988742 22333456679999999999
Q ss_pred HHHHHHHHCC--------Ccccccccc-cccchhhhhccCCcCCCccCCCCchhcceeEEEEEe--eCCCCCCcccEEEc
Q 009304 88 QIIGESAKAG--------LALPYTPYW-WGLTIGGLIGTGAHGSSLWGRGSSIHDYVVELRIVS--SGGPDDGYAKVRVL 156 (538)
Q Consensus 88 ~L~~~l~~~G--------l~l~~~~~~-~~~tvGG~i~tg~hGs~~~~~~G~~~d~V~~l~vV~--~~G~~~g~~~v~~~ 156 (538)
+|.+.-.-+. ...-..|.+ +-.||||.++.+.|-+... ..=.++..+|++ +.|+ +++
T Consensus 78 ei~~~~~~~~~~p~L~ea~~~ia~~qvRN~aTiGGn~c~a~p~aD~~-----~aLlaLdA~v~~~~~~g~-------r~i 145 (284)
T COG1319 78 EIARHPAVRRIPPALSEAASAIASPQVRNRATIGGNLCNADPAADLA-----PALLALDAEVEIRSPGGE-------RTI 145 (284)
T ss_pred HHHhChhhhhhchHHHHHHHHhcChhhcceeeecchhccCCCchhhH-----HHHHHcCCEEEEecCCcc-------EEE
Confidence 9974321111 111223333 3369999988877764321 122223333333 3443 222
Q ss_pred CCCccchhhhhc--CCCCeEEEEEEEEEeE
Q 009304 157 NENDQDLDAAKV--SLGVLGVISQVTLKLQ 184 (538)
Q Consensus 157 ~~~~~~f~a~~~--s~G~lGVIt~vtl~l~ 184 (538)
.- ++|....+ .+.--=+||+|.|-..
T Consensus 146 ~~--~~f~~~p~~t~l~~gelit~v~lP~~ 173 (284)
T COG1319 146 PI--EDFFRGPGETALEPGELITAVILPPP 173 (284)
T ss_pred EH--HHhhcCccccccCCCcEEEEEEcCCC
Confidence 11 13433333 2322238999999776
No 51
>KOG0430 consensus Xanthine dehydrogenase [Nucleotide transport and metabolism]
Probab=57.43 E-value=22 Score=42.40 Aligned_cols=103 Identities=16% Similarity=0.143 Sum_probs=65.2
Q ss_pred EEEeCCCHHHHHHHHHHHHHcCCceEEEeCCCCCCCCCCccCCCCcEEEEcCCCCCeeEEeCCCCEEEEeCCCCHHHHHH
Q 009304 12 DVAYPTSEQEIISVVSAATIAKRKMKVATRFSHSIPKLVCPDGQDGLLISTKYLNKIINIDTEAMTITMESGVTLRQIIG 91 (538)
Q Consensus 12 ~v~~P~s~~el~~~v~~a~~~~~~v~v~~ggghS~~~~~~~~~~~gv~Idl~~ln~v~~vd~~~~~vtv~aGv~l~~L~~ 91 (538)
.-..|.|.+||.++.+ +....+.+ .|++-.+...-..+-.-.||.+.......+..+...++++|++++.++.+
T Consensus 216 ~W~~P~sl~eL~~~~~----~~~~~~Lv--~GNT~~gv~~r~~~~~~~Id~~~v~el~~~~~~~~gi~lGa~~sls~~~~ 289 (1257)
T KOG0430|consen 216 RWYWPVSLEELFELKA----NKPDAKLV--AGNTAHGVYRRSPDYQKFIDVSGVPELKALNVDDNGLELGAALSLSETME 289 (1257)
T ss_pred EEeCcccHHHHHHHHh----cCcceEEE--eccccceEEeccCCCcceechhcCchhhhcccCCCceEEcccccHHHHHH
Confidence 4578999999999988 33344455 33322222111112346788777654445565677899999999999999
Q ss_pred HHHHCCCccc----------------ccccccccchhhhhccCCcC
Q 009304 92 ESAKAGLALP----------------YTPYWWGLTIGGLIGTGAHG 121 (538)
Q Consensus 92 ~l~~~Gl~l~----------------~~~~~~~~tvGG~i~tg~hG 121 (538)
.|.+.-- .| +-+--+..|+||.|.+.+-+
T Consensus 290 ~l~~~~~-~~~~~~~~~~~~hl~~~A~~~IRN~atigGnI~~~~~~ 334 (1257)
T KOG0430|consen 290 LLRKLVK-RPGFEYFKALWEHLKWFANVQIRNVGTIGGNICTKAQS 334 (1257)
T ss_pred HHHHHHh-CcHHHHHHHHHHHHHHhcccceeccccccceeEeccCC
Confidence 8875432 11 11122346999999888765
No 52
>PF03392 OS-D: Insect pheromone-binding family, A10/OS-D; InterPro: IPR005055 A class of small (14-20 Kd) water-soluble proteins, called odorant binding proteins (OBPs), first discovered in the insect sensillar lymph but also in the mucus of vertebrates, is postulated to mediate the solubilisation of hydrophobic odorant molecules, and thereby to facilitate their transport to the receptor neurons. The product of a gene expressed in the olfactory system of Drosophila melanogaster (Fruit fly), OS-D, shares features common to vertebrate odorant-binding proteins, but has a primary structure unlike odorant-binding proteins []. OS-D derivatives have subsequently been found in chemosensory organs of phylogenetically distinct insects, including cockroaches, phasmids and moths, suggesting that OS-D-like proteins seem to be conserved in the insect phylum.; PDB: 1KX9_A 1N8U_A 1KX8_A 1K19_A 1N8V_A 2GVS_A 2JNT_A.
Probab=52.49 E-value=7.5 Score=32.72 Aligned_cols=25 Identities=32% Similarity=0.631 Sum_probs=20.0
Q ss_pred HHHhCCCHHHHHHHHHhcCCCCCCCch
Q 009304 450 VIKKYKNAGEFFKVKDKYDPLGLFSSE 476 (538)
Q Consensus 450 ~~~~Yp~~~~F~~~r~~~DP~g~F~n~ 476 (538)
+.+.|| ++|.+++++|||+|.+...
T Consensus 70 l~~~~P--~~w~~l~~KyDp~~~y~~k 94 (95)
T PF03392_consen 70 LKKNYP--DEWEELVKKYDPEGKYRKK 94 (95)
T ss_dssp HHHHHH--HHHHHHHHHHTTT-TTHHH
T ss_pred HHHcCH--HHHHHHHHHHCCCcchhhc
Confidence 677788 8899999999999987543
No 53
>PF03614 Flag1_repress: Repressor of phase-1 flagellin; InterPro: IPR003223 Flagellin is the subunit which polymerises to form the filaments of bacterial flagella. The proteins in this family are transcriptional repressors of phase-1 flagellin genes.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent
Probab=42.67 E-value=37 Score=30.81 Aligned_cols=37 Identities=5% Similarity=0.012 Sum_probs=32.3
Q ss_pred EEEeCCCHHHHHHHHHHHHHcCCceEEEeCCCCCCCC
Q 009304 12 DVAYPTSEQEIISVVSAATIAKRKMKVATRFSHSIPK 48 (538)
Q Consensus 12 ~v~~P~s~~el~~~v~~a~~~~~~v~v~~ggghS~~~ 48 (538)
+-+.|+..+-+...+++++.+..+|||++.-|+++..
T Consensus 8 AEvwprdys~ler~l~f~r~~~~pVrvv~~ng~~f~m 44 (165)
T PF03614_consen 8 AEVWPRDYSMLERRLQFWRFNDIPVRVVSENGQVFCM 44 (165)
T ss_pred cccCcchHHHHHHHHHHHHhcCCceEEEecCCcEEEE
Confidence 4467999999999999999999999999888887543
No 54
>PF07317 YcgR: Flagellar regulator YcgR; InterPro: IPR009926 This entry represents the N-terminal domain of YcgR proteins. The function of this domain is not known, but it is known to interact with the C-terminal which has cyclic-di-GMP bound []. YcgR is involved in the flagellar motor function and is a member of the flagellar regulon [, ].; PDB: 2GJG_A 3KYF_A.
Probab=40.10 E-value=36 Score=29.13 Aligned_cols=67 Identities=16% Similarity=0.254 Sum_probs=42.5
Q ss_pred CCCHHHHHHHHHHHHHcCCceEEEeCCCCCCCCCCccCCCCcEEEEcCCCCCeeEEeCCCCEEEEeCCCCHHHHHHHHHH
Q 009304 16 PTSEQEIISVVSAATIAKRKMKVATRFSHSIPKLVCPDGQDGLLISTKYLNKIINIDTEAMTITMESGVTLRQIIGESAK 95 (538)
Q Consensus 16 P~s~~el~~~v~~a~~~~~~v~v~~ggghS~~~~~~~~~~~gv~Idl~~ln~v~~vd~~~~~vtv~aGv~l~~L~~~l~~ 95 (538)
-++..||..+++.-.+++..|++....|++ .++ +|++||++++++....|..-.+-...+..
T Consensus 4 ~~~p~eI~~~Lr~L~~~~~~l~v~~~~g~~-------------f~T-----~iL~VD~~~~~l~lD~~~~~~~n~~~l~a 65 (108)
T PF07317_consen 4 LRNPREILAVLRDLAKQRSPLTVRHPRGQS-------------FIT-----SILAVDPDRGTLVLDEGSDEEENQRLLNA 65 (108)
T ss_dssp E-SHHHHHHHHHHHHHTT--EEEETT-SSE-------------EEE------EEEEETTTTEEEEE--BSGGGHHHHHTT
T ss_pred ccCHHHHHHHHHHHHhCCCeEEEEeCCCCE-------------EEE-----EEEEEeCCCCEEEEEcCCChHHHHHHhcC
Confidence 357889999999999999999887333321 222 56899999999999988776666555554
Q ss_pred CCCcc
Q 009304 96 AGLAL 100 (538)
Q Consensus 96 ~Gl~l 100 (538)
.-+.+
T Consensus 66 ~~~~~ 70 (108)
T PF07317_consen 66 EELTF 70 (108)
T ss_dssp --EEE
T ss_pred CcEEE
Confidence 44433
No 55
>PF14625 Lustrin_cystein: Lustrin, cysteine-rich repeated domain
Probab=39.90 E-value=21 Score=25.22 Aligned_cols=22 Identities=32% Similarity=0.637 Sum_probs=17.6
Q ss_pred cCCCCCCCCCCCccccCCcccccc
Q 009304 503 CSQDIHCAPTKGYLCRPGKVYKDA 526 (538)
Q Consensus 503 c~~~~hc~~~~~~~c~~~~~~~~~ 526 (538)
|+.+.+|+ .||+|..+.....+
T Consensus 19 C~~~~~CP--~~y~C~~~~~~~~~ 40 (45)
T PF14625_consen 19 CSPDNSCP--SGYSCHFSTSGSQY 40 (45)
T ss_pred CcCCCCCC--CcCEeeecCCCCee
Confidence 48888999 69999888776553
No 56
>PF11478 Tachystatin_B: Antimicrobial chitin binding protein tachystatin B; InterPro: IPR020957 Tachystatin B is an antimicrobial chitin binding peptide and consists of two isotopes B1 and B2. Both structures contain a short antiparallel beta sheet with an inhibitory cysteine knot motif. Tyr(14) and Arg(17) are thought to be the essential residues for chitin binding []. ; PDB: 2DCW_A 2DCV_A.
Probab=34.78 E-value=26 Score=23.53 Aligned_cols=28 Identities=36% Similarity=0.984 Sum_probs=14.4
Q ss_pred CCCcc-eeecCCCCCCCCCCCcccc---CCcccc
Q 009304 495 CALEG-LCICSQDIHCAPTKGYLCR---PGKVYK 524 (538)
Q Consensus 495 c~~~~-~c~c~~~~hc~~~~~~~c~---~~~~~~ 524 (538)
|-..| .|---..+.|- -||+|| ||.+|.
T Consensus 4 clfrgarcrvysgrscc--fgyycrrdfpgsifg 35 (42)
T PF11478_consen 4 CLFRGARCRVYSGRSCC--FGYYCRRDFPGSIFG 35 (42)
T ss_dssp -B-TT-EEETT-SS-BS--TTEEEEESSTT-SEE
T ss_pred EEeccceEEEecCCceE--eEEEEcccCCCceee
Confidence 33444 45443444454 499998 888875
No 57
>PRK04322 peptidyl-tRNA hydrolase; Provisional
Probab=33.80 E-value=1.1e+02 Score=26.68 Aligned_cols=39 Identities=13% Similarity=0.032 Sum_probs=33.9
Q ss_pred CCCcCEEEeCCCHHHHHHHHHHHHHcCCceEEEeCCCCC
Q 009304 7 ACKAADVAYPTSEQEIISVVSAATIAKRKMKVATRFSHS 45 (538)
Q Consensus 7 ~~~p~~v~~P~s~~el~~~v~~a~~~~~~v~v~~ggghS 45 (538)
...+..|+...+++|+.++.+.|.+.|++..++.-+|++
T Consensus 45 ~G~~Kvvlkv~~~~el~~l~~~a~~~~l~~~~v~DAG~T 83 (113)
T PRK04322 45 EGQKKVVLKVNSEEELLELKEKAERLGLPTALIRDAGLT 83 (113)
T ss_pred CCCcEEEEeCCCHHHHHHHHHHHHHcCCCEEEEEeCCCc
Confidence 356788999999999999999999999998787678876
No 58
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional
Probab=30.94 E-value=38 Score=35.57 Aligned_cols=52 Identities=15% Similarity=0.174 Sum_probs=30.2
Q ss_pred HHHHHHHHhhcCCeeccCCCCCcchhhHHHhC-CC-HHHHHHHHHhcCCCCCCCch
Q 009304 423 EEIEQLAVFKYGGFPHWGKNRNLVFDGVIKKY-KN-AGEFFKVKDKYDPLGLFSSE 476 (538)
Q Consensus 423 ~eie~~~~~k~gGrPHWgK~~~~~~~~~~~~Y-p~-~~~F~~~r~~~DP~g~F~n~ 476 (538)
++|-+. +.++||.--.=.......+.+.. | |. +.-...+|++|||+++|+..
T Consensus 293 ~~~r~~-~~~~gG~~tl~~a~~~~~~~~~~-~~~~~~~l~~~lK~~fDP~~ilnpg 346 (352)
T PRK11282 293 AAIRAA-AAAAGGHATLFRAGDRAGPVFHP-LPAPLLRIHRRLKQAFDPAGIFNPG 346 (352)
T ss_pred HHHHHH-HHhcCCEEEEEECCcccccCCCC-CCHHHHHHHHHHHHhcCcccCCCCC
Confidence 456665 57788733222111111111222 4 34 67889999999999999754
No 59
>PF00396 Granulin: Granulin; InterPro: IPR000118 Metazoan granulins [] are a family of cysteine-rich peptides of about 6 Kd which may have multiple biological activity. A precursor protein (known as acrogranin) potentially encodes seven different forms of granulin (grnA to grnG) which are probably released by post-translational proteolytic processing. Granulins are evolutionary related to a PMP-D1, a peptide extracted from the pars intercerebralis of migratory locusts []. A schematic representation of the structure of a granulin is shown below: xxxCxxxxxCxxxxxCCxxxxxxxxCCxxxxxxCCxxxxxCCxxxxxCxxxxxxCx 'C': conserved cysteine probably involved in a disulphide bond. In plants a granulin domain is often associated with the C terminus of cysteine proteases belong to the MEROPS peptidase family C1, subfamily C1A (papain).; PDB: 1I8Y_A 1QGM_A 1I8X_A 2JYT_A 2JYU_A 1FWO_A 2JYV_A 2JYE_A 1G26_A.
Probab=29.97 E-value=33 Score=24.44 Aligned_cols=16 Identities=56% Similarity=1.470 Sum_probs=14.0
Q ss_pred cCCCCCCCCCCCccccC
Q 009304 503 CSQDIHCAPTKGYLCRP 519 (538)
Q Consensus 503 c~~~~hc~~~~~~~c~~ 519 (538)
|++..||=| .||.|.+
T Consensus 21 C~D~~hCCP-~G~~C~~ 36 (43)
T PF00396_consen 21 CSDGKHCCP-HGYTCDP 36 (43)
T ss_dssp SSTTTTSSS-TTSEEEC
T ss_pred cCCCCccCC-CcCEECC
Confidence 889999999 7999964
No 60
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=29.75 E-value=45 Score=36.12 Aligned_cols=41 Identities=22% Similarity=0.418 Sum_probs=30.0
Q ss_pred chhhhhccCCcCCCccCCCCchhcceeEEEEEeeCCCCCCcccEEEcCC
Q 009304 110 TIGGLIGTGAHGSSLWGRGSSIHDYVVELRIVSSGGPDDGYAKVRVLNE 158 (538)
Q Consensus 110 tvGG~i~tg~hGs~~~~~~G~~~d~V~~l~vV~~~G~~~g~~~v~~~~~ 158 (538)
-|.|++..|+-- +-| .-.+++-+|.+|..|..||+ |+++.+
T Consensus 287 DV~GaivSGtAs-GDw-TLSCVRGqV~SiTFVF~DGt------irTvp~ 327 (472)
T TIGR03752 287 DVAGAVVSGTAS-GDW-TLSCVRGQVRSLTFVFNDGT------IRTVPR 327 (472)
T ss_pred CccceEEeeeec-cce-EEEEEeeeEEEEEEEEeCCe------EEEecC
Confidence 366777665532 222 24689999999999999998 998854
No 61
>PRK02947 hypothetical protein; Provisional
Probab=29.63 E-value=1.5e+02 Score=29.30 Aligned_cols=87 Identities=14% Similarity=0.093 Sum_probs=50.2
Q ss_pred CCCHHHHHHHHHHHHHcCCceEEEeCCCCC---------CCCCCccCCCCcEEEEcCCCCC--eeEEeCCCCEEEEeCCC
Q 009304 16 PTSEQEIISVVSAATIAKRKMKVATRFSHS---------IPKLVCPDGQDGLLISTKYLNK--IINIDTEAMTITMESGV 84 (538)
Q Consensus 16 P~s~~el~~~v~~a~~~~~~v~v~~ggghS---------~~~~~~~~~~~gv~Idl~~ln~--v~~vd~~~~~vtv~aGv 84 (538)
-...+++.++++.|++.|.++-.+++..+| -+.++.- ..++|++..-.+ ++.++.....+-.-+-+
T Consensus 116 sG~t~~~i~~~~~a~~~g~~vI~iT~~~~s~~~~~~h~~gs~l~~~---ad~~l~~~~~~~~~~v~~e~~~~~~~~~s~~ 192 (246)
T PRK02947 116 SGRNPVPIEMALEAKERGAKVIAVTSLAYSASVASRHSSGKRLAEV---ADVVLDNGAPKGDAVLEIPGLEAPVGPVSTV 192 (246)
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEcCCcccccccccCCCcCchhHh---CCEEEEcCCCCCCeEEEeCCCCCCcCcHhHH
Confidence 335678999999999999998888766543 2233321 257777765433 45554322111111111
Q ss_pred ----CH----HHHHHHHHHCCCccccccc
Q 009304 85 ----TL----RQIIGESAKAGLALPYTPY 105 (538)
Q Consensus 85 ----~l----~~L~~~l~~~Gl~l~~~~~ 105 (538)
.+ ..+.+.+.+.|+..|...+
T Consensus 193 ~~~~i~~~l~~~~~~~~~~~g~~~~~~~~ 221 (246)
T PRK02947 193 VGAAILNAIFAEVAERLVERGITPPVFLS 221 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCeeec
Confidence 11 2234455788998887664
No 62
>PF01981 PTH2: Peptidyl-tRNA hydrolase PTH2; InterPro: IPR002833 Peptidyl-tRNA hydrolases are enzymes that release tRNAs from peptidyl-tRNA during translation.; GO: 0004045 aminoacyl-tRNA hydrolase activity; PDB: 1RLK_A 1XTY_C 2ZV3_I 2D3K_A 1WN2_A 1Q7S_A 3ERJ_B 1RZW_A.
Probab=29.21 E-value=1.5e+02 Score=25.65 Aligned_cols=38 Identities=16% Similarity=0.067 Sum_probs=32.7
Q ss_pred CCcCEEEeCCCHHHHHHHHHHHHHcCCceEEEeCCCCC
Q 009304 8 CKAADVAYPTSEQEIISVVSAATIAKRKMKVATRFSHS 45 (538)
Q Consensus 8 ~~p~~v~~P~s~~el~~~v~~a~~~~~~v~v~~ggghS 45 (538)
..+..|+...+++|+.++.+.|.+.|++..++.-.|++
T Consensus 49 g~~Kivlkv~~e~~L~~l~~~a~~~gl~~~~i~Dag~T 86 (116)
T PF01981_consen 49 GQKKIVLKVPSEEELLELAKKAKEAGLPHYLIRDAGRT 86 (116)
T ss_dssp TTSEEEEEESSHHHHHHHHHHHHHTT-SEEEEEETSSS
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHCCCCEEEEEECCCC
Confidence 45678889999999999999999999998888778887
No 63
>COG5470 Uncharacterized conserved protein [Function unknown]
Probab=29.02 E-value=84 Score=26.40 Aligned_cols=50 Identities=18% Similarity=0.303 Sum_probs=35.0
Q ss_pred cchHHHHHHHHHHHHhhcCCeec--cCCC----------CC--c---chhhHHHhC--CCHHHHHHHHHh
Q 009304 416 RLYEDILEEIEQLAVFKYGGFPH--WGKN----------RN--L---VFDGVIKKY--KNAGEFFKVKDK 466 (538)
Q Consensus 416 ~~~~~~~~eie~~~~~k~gGrPH--WgK~----------~~--~---~~~~~~~~Y--p~~~~F~~~r~~ 466 (538)
..|+++...+-.. +.|||||+- =|+- ++ + +.+.+++.| |.+..++++|+.
T Consensus 16 e~y~~Y~~~~~~a-~~~~Ggr~LvRGG~v~~lEG~w~ptr~vviEFps~~~ar~~y~SpeYq~a~~~Rq~ 84 (96)
T COG5470 16 EQYKDYVSKAKPA-IEKFGGRYLVRGGEVETLEGEWRPTRNVVIEFPSLEAARDCYNSPEYQAAAAIRQA 84 (96)
T ss_pred HHHHHHHHHhHHH-HHHhCCeeEeeCCCeeeccCCCCcccEEEEEcCCHHHHHHHhcCHHHHHHHHHHhh
Confidence 4688998888887 899999653 2222 11 1 224567788 899999998875
No 64
>TIGR00283 arch_pth2 peptidyl-tRNA hydrolase. This model describes an archaeal/eukaryotic form of peptidyl-tRNA hydrolase. Most bacterial forms are described by TIGR00447.
Probab=26.68 E-value=1.9e+02 Score=25.20 Aligned_cols=39 Identities=13% Similarity=0.047 Sum_probs=33.7
Q ss_pred CCCcCEEEeCCCHHHHHHHHHHHHHcCCceEEEeCCCCC
Q 009304 7 ACKAADVAYPTSEQEIISVVSAATIAKRKMKVATRFSHS 45 (538)
Q Consensus 7 ~~~p~~v~~P~s~~el~~~v~~a~~~~~~v~v~~ggghS 45 (538)
...+..++.-.+++|+.++.+.|.+.|++..++.-+|++
T Consensus 47 ~G~~KVvlk~~~~~el~~l~~~a~~~~l~~~~v~DAG~T 85 (115)
T TIGR00283 47 EGQKKVVLKVNSLEELLEIYHKAESLGLVTGLIRDAGHT 85 (115)
T ss_pred cCCCEEEEEeCCHHHHHHHHHHHHHcCCCEEEEEcCCcc
Confidence 345778899899999999999999999998887678886
No 65
>cd02407 PTH2_family Peptidyl-tRNA hydrolase, type 2 (PTH2)_like . Peptidyl-tRNA hydrolase activity releases tRNA from the premature translation termination product peptidyl-tRNA. Two structurally different enzymes have been reported to encode such activity, Pth present in bacteria and eukaryotes and Pth2 present in archaea and eukaryotes.
Probab=26.10 E-value=1.8e+02 Score=25.25 Aligned_cols=39 Identities=13% Similarity=0.063 Sum_probs=33.8
Q ss_pred CCCcCEEEeCCCHHHHHHHHHHHHHcCCceEEEeCCCCC
Q 009304 7 ACKAADVAYPTSEQEIISVVSAATIAKRKMKVATRFSHS 45 (538)
Q Consensus 7 ~~~p~~v~~P~s~~el~~~v~~a~~~~~~v~v~~ggghS 45 (538)
...+..|+...+++|+.++.+.|.+.|++..++.-+|++
T Consensus 47 ~g~~KvVl~v~~~~~l~~l~~~a~~~gl~~~~v~DAG~T 85 (115)
T cd02407 47 EGQKKVVLKVPSEEELLELAKKAKELGLPHSLIQDAGRT 85 (115)
T ss_pred CCCcEEEEECCCHHHHHHHHHHHHHcCCCeEEEEECCCc
Confidence 445788999999999999999999999998777678886
No 66
>PF04706 Dickkopf_N: Dickkopf N-terminal cysteine-rich region; InterPro: IPR006796 Dickkopf proteins are a class of Wnt antagonists. They possess two conserved cysteine-rich regions. This family represents the N-terminal conserved region []. The C-terminal region has been found to share significant sequence similarity to the colipase fold (IPR001981 from INTERPRO) [].; GO: 0007275 multicellular organismal development, 0030178 negative regulation of Wnt receptor signaling pathway, 0005576 extracellular region
Probab=23.05 E-value=70 Score=23.76 Aligned_cols=26 Identities=27% Similarity=0.635 Sum_probs=19.0
Q ss_pred cCCCCCCCCCCCccccCCcccccccccc
Q 009304 503 CSQDIHCAPTKGYLCRPGKVYKDARVCT 530 (538)
Q Consensus 503 c~~~~hc~~~~~~~c~~~~~~~~~~~c~ 530 (538)
|+.|++|+ .|.||.-...-..-.-|+
T Consensus 2 C~~D~dC~--~g~yC~~~~~~~~C~~Cr 27 (52)
T PF04706_consen 2 CSSDEDCG--YGKYCHSSSFESKCLPCR 27 (52)
T ss_pred CcccccCC--CCCCcCCCCCCccChhhc
Confidence 89999999 599998776654444443
No 67
>cd02430 PTH2 Peptidyl-tRNA hydrolase, type 2 (PTH2). Peptidyl-tRNA hydrolase (PTH) activity releases tRNA from the premature translation termination product peptidyl-tRNA, therefore allowing the tRNA and peptide to be reused in protein synthesis. PTH2 is present in archaea and eukaryotes.
Probab=22.90 E-value=2.6e+02 Score=24.35 Aligned_cols=37 Identities=14% Similarity=0.078 Sum_probs=32.4
Q ss_pred CcCEEEeCCCHHHHHHHHHHHHHcCCceEEEeCCCCC
Q 009304 9 KAADVAYPTSEQEIISVVSAATIAKRKMKVATRFSHS 45 (538)
Q Consensus 9 ~p~~v~~P~s~~el~~~v~~a~~~~~~v~v~~ggghS 45 (538)
.+..|+.-.+++|+.++.+.|.+.|++..++.-+|++
T Consensus 49 ~~KiVl~~~~~~el~~l~~~a~~~~l~~~~v~DAG~T 85 (115)
T cd02430 49 QKKIVLKVNSEEELLELKKKAKSLGLPTSLIQDAGRT 85 (115)
T ss_pred CcEEEEecCCHHHHHHHHHHHHHcCCCeEEEEeCCCc
Confidence 5777889999999999999999999998888678876
No 68
>KOG3282 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.18 E-value=2.2e+02 Score=26.88 Aligned_cols=39 Identities=15% Similarity=0.098 Sum_probs=33.8
Q ss_pred CCCcCEEEeCCCHHHHHHHHHHHHHcCCceEEEeCCCCC
Q 009304 7 ACKAADVAYPTSEQEIISVVSAATIAKRKMKVATRFSHS 45 (538)
Q Consensus 7 ~~~p~~v~~P~s~~el~~~v~~a~~~~~~v~v~~ggghS 45 (538)
.+.|..|+.-.+++++.++.+.|+..|++..++--+|-+
T Consensus 122 ~GQ~KIvvk~~~e~~l~~l~~~A~~~gl~t~~i~DAGrT 160 (190)
T KOG3282|consen 122 CGQAKIVVKAESEEELMELQKDAKKLGLYTHLIQDAGRT 160 (190)
T ss_pred cCCceEEEEcCCHHHHHHHHHHHHHcCCcEEEEEcCCcc
Confidence 357899999999999999999999999998888556664
No 69
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=21.60 E-value=5.5e+02 Score=28.99 Aligned_cols=80 Identities=10% Similarity=0.137 Sum_probs=45.9
Q ss_pred CCcC-EEEeCCCHHHHHHHHHHHHHcC-CceEEEeCCCCCCCCCCccCCCCcEEEEcCCCCCeeEEeCCCCEEEEeCCCC
Q 009304 8 CKAA-DVAYPTSEQEIISVVSAATIAK-RKMKVATRFSHSIPKLVCPDGQDGLLISTKYLNKIINIDTEAMTITMESGVT 85 (538)
Q Consensus 8 ~~p~-~v~~P~s~~el~~~v~~a~~~~-~~v~v~~ggghS~~~~~~~~~~~gv~Idl~~ln~v~~vd~~~~~vtv~aGv~ 85 (538)
|.|- .+..|++++|+++++.+|.... .|+.++==-|+.......+ ..-.++..+ . .-+-+..+.+.+.=|+.
T Consensus 439 ~iPnmvi~aP~de~el~~ml~ta~~~~~gP~AiRyPrg~~~~~~~~~---~~~~~~~Gk--~-~i~~~G~~vail~~G~~ 512 (627)
T COG1154 439 CIPNMVIMAPRDEEELRQMLYTALAQDDGPVAIRYPRGNGVGVILTP---ELEPLEIGK--G-ELLKEGEKVAILAFGTM 512 (627)
T ss_pred cCCCcEEecCCCHHHHHHHHHHHHhcCCCCeEEEecCCCCCCCCccc---ccccccccc--e-EEEecCCcEEEEecchh
Confidence 5553 4678999999999999999988 5887762122211111000 011222222 1 12334566778888888
Q ss_pred HHHHHHHH
Q 009304 86 LRQIIGES 93 (538)
Q Consensus 86 l~~L~~~l 93 (538)
+..-...+
T Consensus 513 ~~~al~va 520 (627)
T COG1154 513 LPEALKVA 520 (627)
T ss_pred hHHHHHHH
Confidence 77554443
No 70
>COG0351 ThiD Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [Coenzyme metabolism]
Probab=20.75 E-value=2.4e+02 Score=28.40 Aligned_cols=80 Identities=15% Similarity=0.103 Sum_probs=52.9
Q ss_pred eCCCHHHHHHHHHHHHHcCCceEEEeCCCCCCCCCCccCCCCcEEEEcCCCCCeeEEeC--CCCEEEEeCCCCHHHHHHH
Q 009304 15 YPTSEQEIISVVSAATIAKRKMKVATRFSHSIPKLVCPDGQDGLLISTKYLNKIINIDT--EAMTITMESGVTLRQIIGE 92 (538)
Q Consensus 15 ~P~s~~el~~~v~~a~~~~~~v~v~~ggghS~~~~~~~~~~~gv~Idl~~ln~v~~vd~--~~~~vtv~aGv~l~~L~~~ 92 (538)
..+|++|++++-+...+.|.+--++ .|||... .+. .++.+-..+ ..+.. -...=+=++|+++...+.+
T Consensus 151 ~i~~~~d~~~a~~~i~~~g~~~Vli-KGGH~~~--~~~----D~l~~~~~~---~~f~~~ri~t~~tHGTGCTlSaAIaa 220 (263)
T COG0351 151 KIKTEEDMKEAAKLLHELGAKAVLI-KGGHLEG--EAV----DVLYDGGSF---YTFEAPRIPTKNTHGTGCTLSAAIAA 220 (263)
T ss_pred ccCCHHHHHHHHHHHHHhCCCEEEE-cCCCCCC--Cce----eEEEcCCce---EEEeccccCCCCCCCccHHHHHHHHH
Confidence 5678999999988888888886666 8999854 222 345543311 11111 0112256899999998888
Q ss_pred HHHCCCcccccc
Q 009304 93 SAKAGLALPYTP 104 (538)
Q Consensus 93 l~~~Gl~l~~~~ 104 (538)
-..+|+.+...-
T Consensus 221 ~LA~G~~l~~AV 232 (263)
T COG0351 221 NLAKGLSLEEAV 232 (263)
T ss_pred HHHcCCCHHHHH
Confidence 888898776543
No 71
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=20.20 E-value=1.4e+02 Score=33.10 Aligned_cols=96 Identities=17% Similarity=0.184 Sum_probs=54.6
Q ss_pred CCcCEEEeCCCHHHHHHHHHHHHHcCCc-eEE--E---eCCCCCCCCCCccCCCCcEEEE-cCCCCCeeEEeCCCCEEEE
Q 009304 8 CKAADVAYPTSEQEIISVVSAATIAKRK-MKV--A---TRFSHSIPKLVCPDGQDGLLIS-TKYLNKIINIDTEAMTITM 80 (538)
Q Consensus 8 ~~p~~v~~P~s~~el~~~v~~a~~~~~~-v~v--~---~ggghS~~~~~~~~~~~gv~Id-l~~ln~v~~vd~~~~~vtv 80 (538)
+-|-..+.|-|+++|.++++.|+++-.. |.+ - .||-|||..+- ..+|- .+++.+ . ++=++-|
T Consensus 150 G~~yv~fKPGtIeqI~svi~IAka~P~~pIilq~egGraGGHHSweDld------~llL~tYs~lR~---~--~NIvl~v 218 (717)
T COG4981 150 GFPYVAFKPGTIEQIRSVIRIAKANPTFPIILQWEGGRAGGHHSWEDLD------DLLLATYSELRS---R--DNIVLCV 218 (717)
T ss_pred CceeEEecCCcHHHHHHHHHHHhcCCCCceEEEEecCccCCccchhhcc------cHHHHHHHHHhc---C--CCEEEEe
Confidence 3456788999999999999999997532 222 1 23456776543 23332 233322 1 2335778
Q ss_pred eCCCCHHH-HHHHHH---HCCCcccccccccccchhhhh
Q 009304 81 ESGVTLRQ-IIGESA---KAGLALPYTPYWWGLTIGGLI 115 (538)
Q Consensus 81 ~aGv~l~~-L~~~l~---~~Gl~l~~~~~~~~~tvGG~i 115 (538)
++|+--.+ -..+|- ..-+.+|.||- +++-+|-++
T Consensus 219 GgGiGtp~~aa~YLTGeWSt~~g~P~MP~-DGiLvGtaa 256 (717)
T COG4981 219 GGGIGTPDDAAPYLTGEWSTAYGFPPMPF-DGILVGTAA 256 (717)
T ss_pred cCCcCChhhcccccccchhhhcCCCCCCc-ceeEechhH
Confidence 88875443 333442 22345666664 555555443
Done!