Query 009306
Match_columns 538
No_of_seqs 328 out of 2965
Neff 9.4
Searched_HMMs 46136
Date Thu Mar 28 22:57:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009306.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009306hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 5.2E-88 1.1E-92 771.7 50.6 516 13-533 8-536 (1153)
2 KOG4658 Apoptotic ATPase [Sign 100.0 1.5E-39 3.4E-44 354.8 25.5 303 191-499 161-496 (889)
3 PLN03194 putative disease resi 100.0 2.1E-39 4.5E-44 281.8 15.1 160 7-180 16-178 (187)
4 PF00931 NB-ARC: NB-ARC domain 100.0 5.1E-37 1.1E-41 302.4 14.7 266 193-462 1-282 (287)
5 smart00255 TIR Toll - interleu 99.8 1.8E-20 4E-25 163.7 12.1 134 17-151 1-138 (140)
6 PF01582 TIR: TIR domain; Int 99.8 1.6E-21 3.4E-26 170.1 3.2 129 20-148 1-140 (141)
7 PRK04841 transcriptional regul 99.8 1.4E-16 3E-21 181.8 28.2 315 183-523 9-352 (903)
8 PF13676 TIR_2: TIR domain; PD 99.7 3.4E-17 7.4E-22 134.4 2.8 87 20-112 1-87 (102)
9 COG2909 MalT ATP-dependent tra 99.6 3.2E-14 6.9E-19 149.2 20.1 296 183-502 14-342 (894)
10 PRK00411 cdc6 cell division co 99.6 7.7E-13 1.7E-17 136.3 25.7 284 185-479 27-358 (394)
11 COG3899 Predicted ATPase [Gene 99.5 1.4E-13 3.1E-18 152.1 18.1 326 189-527 1-407 (849)
12 TIGR00635 ruvB Holliday juncti 99.5 8.4E-13 1.8E-17 131.1 15.7 258 188-484 4-294 (305)
13 TIGR02928 orc1/cdc6 family rep 99.5 2.4E-11 5.1E-16 124.0 26.3 285 185-480 12-351 (365)
14 PRK00080 ruvB Holliday junctio 99.5 5E-13 1.1E-17 133.7 13.2 262 184-483 21-314 (328)
15 PF01637 Arch_ATPase: Archaeal 99.4 8.9E-13 1.9E-17 125.4 11.7 198 190-391 1-234 (234)
16 TIGR03015 pepcterm_ATPase puta 99.2 1.1E-09 2.3E-14 106.8 20.6 178 211-395 43-242 (269)
17 PF05729 NACHT: NACHT domain 99.2 2.2E-10 4.9E-15 102.7 12.3 142 212-360 1-163 (166)
18 PTZ00112 origin recognition co 99.1 3.6E-09 7.9E-14 112.6 17.1 283 184-479 751-1086(1164)
19 PRK06893 DNA replication initi 99.1 4.3E-09 9.2E-14 99.5 15.2 155 210-395 38-207 (229)
20 COG1474 CDC6 Cdc6-related prot 99.1 1.8E-08 3.9E-13 101.0 20.4 282 184-479 13-334 (366)
21 COG3903 Predicted ATPase [Gene 99.0 3.7E-10 8E-15 110.6 7.2 283 210-502 13-318 (414)
22 KOG3678 SARM protein (with ste 99.0 2.2E-09 4.7E-14 105.1 10.6 97 8-110 603-708 (832)
23 PF14516 AAA_35: AAA-like doma 99.0 1.9E-07 4E-12 93.3 24.6 282 184-493 7-328 (331)
24 PF05496 RuvB_N: Holliday junc 99.0 7E-09 1.5E-13 94.5 11.9 180 184-395 20-225 (233)
25 PRK07003 DNA polymerase III su 98.9 3.9E-08 8.5E-13 104.4 18.3 201 184-392 12-222 (830)
26 PRK13342 recombination factor 98.9 9.6E-08 2.1E-12 98.6 21.1 179 185-394 9-199 (413)
27 PRK04195 replication factor C 98.9 3.9E-08 8.5E-13 103.5 18.3 222 180-427 6-239 (482)
28 COG2256 MGS1 ATPase related to 98.9 1.1E-08 2.4E-13 99.8 12.5 169 187-386 23-207 (436)
29 TIGR03420 DnaA_homol_Hda DnaA 98.9 2.3E-08 5E-13 94.6 14.5 175 188-395 15-205 (226)
30 PLN03025 replication factor C 98.9 4.3E-08 9.3E-13 97.7 16.9 186 182-388 7-197 (319)
31 PRK00440 rfc replication facto 98.9 6.3E-08 1.4E-12 96.8 16.8 185 183-388 12-200 (319)
32 PTZ00202 tuzin; Provisional 98.9 1.7E-07 3.7E-12 93.2 19.2 182 169-360 237-434 (550)
33 PRK12402 replication factor C 98.9 7E-08 1.5E-12 97.3 17.1 202 183-390 10-225 (337)
34 PRK14963 DNA polymerase III su 98.9 4.1E-08 8.9E-13 102.7 15.3 194 184-388 10-214 (504)
35 COG2255 RuvB Holliday junction 98.9 5.9E-08 1.3E-12 90.3 14.0 261 184-485 22-317 (332)
36 PRK14961 DNA polymerase III su 98.8 1.8E-07 4E-12 94.7 18.4 192 185-388 13-217 (363)
37 PRK07471 DNA polymerase III su 98.8 4.9E-07 1.1E-11 90.9 21.2 196 184-391 15-238 (365)
38 PRK14949 DNA polymerase III su 98.8 2.4E-07 5.2E-12 100.5 20.0 196 185-389 13-218 (944)
39 PRK12323 DNA polymerase III su 98.8 4.7E-07 1E-11 95.1 21.5 194 184-388 12-222 (700)
40 PRK08903 DnaA regulatory inact 98.8 6.5E-08 1.4E-12 91.6 13.5 174 186-395 16-203 (227)
41 PRK14960 DNA polymerase III su 98.8 2.2E-07 4.8E-12 97.7 18.4 192 184-388 11-216 (702)
42 PRK08727 hypothetical protein; 98.8 1.7E-07 3.6E-12 88.9 15.3 169 187-388 18-201 (233)
43 PF13401 AAA_22: AAA domain; P 98.8 6.4E-08 1.4E-12 83.1 10.4 114 210-329 3-125 (131)
44 PRK09087 hypothetical protein; 98.7 5.1E-07 1.1E-11 84.9 16.5 143 211-395 44-199 (226)
45 PF00308 Bac_DnaA: Bacterial d 98.7 3.4E-07 7.4E-12 85.7 15.2 186 188-395 8-212 (219)
46 PRK14956 DNA polymerase III su 98.7 4.4E-07 9.6E-12 92.9 16.5 192 184-386 14-217 (484)
47 PRK05642 DNA replication initi 98.7 4.3E-07 9.3E-12 86.1 15.4 154 211-395 45-212 (234)
48 PRK14962 DNA polymerase III su 98.7 7.8E-07 1.7E-11 92.5 18.6 198 184-395 10-223 (472)
49 PRK14964 DNA polymerase III su 98.7 8.1E-07 1.8E-11 92.0 18.4 180 184-388 9-214 (491)
50 PRK06645 DNA polymerase III su 98.7 9.6E-07 2.1E-11 92.2 19.0 192 184-388 17-226 (507)
51 PF13191 AAA_16: AAA ATPase do 98.7 3.5E-08 7.7E-13 90.1 7.5 50 189-238 1-51 (185)
52 PRK08084 DNA replication initi 98.7 5.1E-07 1.1E-11 85.7 15.5 155 210-395 44-213 (235)
53 PRK08691 DNA polymerase III su 98.7 5.5E-07 1.2E-11 95.7 16.8 196 184-390 12-219 (709)
54 PRK14958 DNA polymerase III su 98.7 9E-07 2E-11 93.0 18.0 182 184-389 12-218 (509)
55 PRK09112 DNA polymerase III su 98.7 4.5E-06 9.9E-11 83.5 22.2 195 184-391 19-240 (351)
56 PRK07940 DNA polymerase III su 98.7 9E-07 2E-11 89.8 17.3 169 188-388 5-210 (394)
57 TIGR01242 26Sp45 26S proteasom 98.7 2.9E-07 6.2E-12 93.6 13.7 174 186-385 120-328 (364)
58 PRK14951 DNA polymerase III su 98.7 1.4E-06 3.1E-11 92.7 19.3 194 185-390 13-224 (618)
59 TIGR02397 dnaX_nterm DNA polym 98.7 1.1E-06 2.3E-11 89.4 17.9 184 185-392 11-219 (355)
60 PF13173 AAA_14: AAA domain 98.6 2.5E-07 5.5E-12 79.0 10.6 119 212-352 3-127 (128)
61 PRK14957 DNA polymerase III su 98.6 1.3E-06 2.9E-11 91.7 17.6 196 185-391 13-221 (546)
62 PRK07994 DNA polymerase III su 98.6 5.8E-07 1.3E-11 95.8 15.1 194 184-388 12-217 (647)
63 PRK05564 DNA polymerase III su 98.6 3.5E-06 7.5E-11 83.8 19.6 176 188-389 4-188 (313)
64 PRK14087 dnaA chromosomal repl 98.6 1.2E-06 2.7E-11 90.8 16.0 167 211-395 141-323 (450)
65 PRK13341 recombination factor 98.6 1E-06 2.2E-11 96.0 15.8 173 185-388 25-214 (725)
66 TIGR00678 holB DNA polymerase 98.6 3E-06 6.6E-11 77.6 16.6 88 291-386 95-186 (188)
67 cd00009 AAA The AAA+ (ATPases 98.6 5.2E-07 1.1E-11 78.6 10.8 54 191-246 1-54 (151)
68 PRK07764 DNA polymerase III su 98.6 3.1E-06 6.7E-11 93.3 19.0 193 184-387 11-217 (824)
69 PRK14952 DNA polymerase III su 98.6 3.9E-06 8.4E-11 89.1 18.8 202 184-393 9-222 (584)
70 PRK14970 DNA polymerase III su 98.6 3.8E-06 8.2E-11 85.6 18.1 182 184-388 13-206 (367)
71 PRK14955 DNA polymerase III su 98.6 2.5E-06 5.4E-11 87.6 16.8 200 184-390 12-227 (397)
72 PRK05896 DNA polymerase III su 98.5 2.1E-06 4.6E-11 90.3 16.1 198 184-393 12-223 (605)
73 PRK09111 DNA polymerase III su 98.5 6.3E-06 1.4E-10 88.0 19.6 195 184-391 20-233 (598)
74 PRK14959 DNA polymerase III su 98.5 3.2E-06 7E-11 89.5 17.0 196 184-395 12-225 (624)
75 PRK06620 hypothetical protein; 98.5 1.8E-06 3.8E-11 80.5 13.6 138 212-393 45-191 (214)
76 PRK03992 proteasome-activating 98.5 3.1E-06 6.7E-11 86.5 15.9 174 186-385 129-337 (389)
77 PRK14950 DNA polymerase III su 98.5 1.4E-06 3E-11 93.7 13.7 197 185-393 13-223 (585)
78 PHA02544 44 clamp loader, smal 98.5 1.2E-06 2.6E-11 87.5 12.4 156 178-358 11-171 (316)
79 PRK14088 dnaA chromosomal repl 98.5 4.4E-06 9.4E-11 86.6 16.8 162 211-393 130-307 (440)
80 PRK14969 DNA polymerase III su 98.5 3.4E-06 7.3E-11 89.3 16.1 196 185-391 13-221 (527)
81 KOG0989 Replication factor C, 98.5 7.3E-06 1.6E-10 77.5 16.3 188 180-385 28-224 (346)
82 PRK14954 DNA polymerase III su 98.5 1E-05 2.2E-10 86.6 19.3 198 184-386 12-223 (620)
83 PRK14953 DNA polymerase III su 98.5 1.5E-05 3.2E-10 83.4 20.1 193 185-392 13-221 (486)
84 TIGR00362 DnaA chromosomal rep 98.5 4.8E-06 1E-10 86.0 16.3 162 211-394 136-313 (405)
85 KOG2028 ATPase related to the 98.5 1.8E-06 3.9E-11 83.0 11.8 175 185-385 135-330 (554)
86 PRK00149 dnaA chromosomal repl 98.5 3.7E-06 8.1E-11 87.9 15.4 161 211-393 148-324 (450)
87 PRK08451 DNA polymerase III su 98.4 2.3E-05 4.9E-10 82.1 20.7 195 184-391 10-218 (535)
88 TIGR02881 spore_V_K stage V sp 98.4 2.7E-06 5.8E-11 82.3 12.4 131 210-360 41-191 (261)
89 TIGR03345 VI_ClpV1 type VI sec 98.4 4.4E-06 9.4E-11 93.3 15.2 194 167-384 169-389 (852)
90 TIGR02639 ClpA ATP-dependent C 98.4 4.6E-06 1E-10 92.3 15.3 193 167-383 164-383 (731)
91 PRK07133 DNA polymerase III su 98.4 1.1E-05 2.3E-10 86.9 17.2 196 184-391 14-220 (725)
92 KOG2227 Pre-initiation complex 98.4 1.3E-05 2.8E-10 80.0 15.9 172 185-360 147-338 (529)
93 PRK14086 dnaA chromosomal repl 98.4 1.2E-05 2.5E-10 85.0 16.1 161 211-393 314-490 (617)
94 PRK06647 DNA polymerase III su 98.4 2.9E-05 6.3E-10 82.6 19.3 194 184-389 12-218 (563)
95 PRK06305 DNA polymerase III su 98.4 1.9E-05 4.2E-10 82.0 17.6 198 185-391 14-223 (451)
96 PRK12422 chromosomal replicati 98.4 2.6E-05 5.6E-10 80.7 18.3 153 211-385 141-307 (445)
97 PF08937 DUF1863: MTH538 TIR-l 98.3 8.9E-07 1.9E-11 75.7 6.3 89 18-111 1-107 (130)
98 PRK14971 DNA polymerase III su 98.3 5.5E-05 1.2E-09 81.4 20.9 191 185-388 14-219 (614)
99 PRK14948 DNA polymerase III su 98.3 7E-05 1.5E-09 80.6 21.0 196 185-391 13-222 (620)
100 PRK14965 DNA polymerase III su 98.3 2.5E-05 5.5E-10 83.7 17.3 198 185-391 13-221 (576)
101 PRK05563 DNA polymerase III su 98.3 3.3E-05 7.2E-10 82.4 17.8 190 184-387 12-216 (559)
102 CHL00095 clpC Clp protease ATP 98.3 8.8E-06 1.9E-10 91.2 14.0 193 167-383 161-379 (821)
103 TIGR03689 pup_AAA proteasome A 98.3 1.7E-05 3.7E-10 82.6 14.4 159 188-360 182-378 (512)
104 PRK10865 protein disaggregatio 98.2 2.4E-05 5.3E-10 87.6 16.3 170 167-360 160-354 (857)
105 COG3267 ExeA Type II secretory 98.2 0.0001 2.2E-09 68.3 17.3 181 209-394 49-248 (269)
106 TIGR03346 chaperone_ClpB ATP-d 98.2 3E-05 6.5E-10 87.3 16.8 154 186-360 171-349 (852)
107 PTZ00454 26S protease regulato 98.2 2.3E-05 5E-10 79.8 14.3 174 187-385 144-351 (398)
108 PRK07399 DNA polymerase III su 98.2 0.00024 5.1E-09 70.3 21.0 192 188-391 4-221 (314)
109 PF05621 TniB: Bacterial TniB 98.2 7.6E-05 1.6E-09 71.7 16.8 198 188-389 34-259 (302)
110 PF05673 DUF815: Protein of un 98.2 8.5E-05 1.8E-09 69.1 16.3 56 184-239 23-80 (249)
111 PRK05707 DNA polymerase III su 98.2 7.3E-05 1.6E-09 74.3 17.0 93 292-390 106-202 (328)
112 PF10443 RNA12: RNA12 protein; 98.2 0.00037 8.1E-09 69.9 21.6 104 293-397 149-284 (431)
113 TIGR02880 cbbX_cfxQ probable R 98.2 5E-05 1.1E-09 74.1 15.4 128 213-360 60-208 (284)
114 COG0593 DnaA ATPase involved i 98.1 6.8E-05 1.5E-09 75.4 15.5 155 210-385 112-280 (408)
115 CHL00176 ftsH cell division pr 98.1 7.6E-05 1.7E-09 80.4 16.6 172 187-383 182-386 (638)
116 PRK11034 clpA ATP-dependent Cl 98.1 4.5E-05 9.8E-10 83.7 14.5 152 188-360 186-362 (758)
117 PTZ00361 26 proteosome regulat 98.1 3E-05 6.6E-10 79.6 12.4 173 188-385 183-389 (438)
118 TIGR02903 spore_lon_C ATP-depe 98.1 4.6E-05 1E-09 82.3 14.3 50 184-235 150-199 (615)
119 COG1373 Predicted ATPase (AAA+ 98.1 0.00027 5.9E-09 72.3 19.1 222 213-478 39-269 (398)
120 TIGR01241 FtsH_fam ATP-depende 98.1 9E-05 2E-09 78.5 15.7 180 187-391 54-267 (495)
121 KOG2543 Origin recognition com 98.1 6.3E-05 1.4E-09 73.3 12.9 168 186-360 4-193 (438)
122 COG1222 RPT1 ATP-dependent 26S 98.0 0.00011 2.4E-09 71.1 14.1 171 189-385 152-357 (406)
123 CHL00181 cbbX CbbX; Provisiona 98.0 0.00019 4.2E-09 70.0 15.9 129 212-360 60-209 (287)
124 PF00004 AAA: ATPase family as 98.0 5.1E-05 1.1E-09 64.9 10.3 23 214-236 1-23 (132)
125 CHL00195 ycf46 Ycf46; Provisio 98.0 0.00014 3.1E-09 75.8 15.2 175 188-385 228-429 (489)
126 PRK08116 hypothetical protein; 98.0 5.8E-05 1.2E-09 73.0 10.6 102 212-330 115-221 (268)
127 cd01128 rho_factor Transcripti 97.9 1.2E-05 2.6E-10 76.5 5.4 93 210-304 15-115 (249)
128 KOG0744 AAA+-type ATPase [Post 97.9 7E-05 1.5E-09 71.3 10.0 80 211-304 177-262 (423)
129 COG2812 DnaX DNA polymerase II 97.9 0.00025 5.5E-09 73.6 14.8 187 185-385 13-214 (515)
130 TIGR01243 CDC48 AAA family ATP 97.9 0.00014 3.1E-09 80.8 14.1 173 188-385 178-381 (733)
131 PRK08769 DNA polymerase III su 97.9 0.00058 1.2E-08 67.4 16.7 91 292-390 113-207 (319)
132 TIGR00602 rad24 checkpoint pro 97.9 5.3E-05 1.2E-09 81.1 10.1 56 181-236 77-135 (637)
133 PF08357 SEFIR: SEFIR domain; 97.9 1.8E-05 3.9E-10 69.6 5.2 64 19-82 2-70 (150)
134 PRK08058 DNA polymerase III su 97.9 0.00039 8.4E-09 69.5 15.3 146 189-359 6-181 (329)
135 smart00382 AAA ATPases associa 97.8 8.5E-05 1.8E-09 63.9 8.7 35 212-246 3-37 (148)
136 PRK07952 DNA replication prote 97.8 0.00057 1.2E-08 64.8 14.7 36 211-246 99-134 (244)
137 PRK08181 transposase; Validate 97.8 8E-05 1.7E-09 71.6 9.0 35 212-246 107-141 (269)
138 TIGR01243 CDC48 AAA family ATP 97.8 0.00023 4.9E-09 79.2 13.9 173 188-385 453-657 (733)
139 COG1223 Predicted ATPase (AAA+ 97.8 0.0002 4.3E-09 66.3 10.8 172 188-385 121-319 (368)
140 PRK09376 rho transcription ter 97.8 3.8E-05 8.2E-10 76.4 6.7 92 210-303 168-267 (416)
141 PRK12377 putative replication 97.8 0.0001 2.2E-09 70.0 8.9 36 211-246 101-136 (248)
142 TIGR02640 gas_vesic_GvpN gas v 97.8 0.001 2.2E-08 64.2 16.0 25 213-237 23-47 (262)
143 PRK07993 DNA polymerase III su 97.8 0.0014 3E-08 65.5 16.8 89 291-386 107-199 (334)
144 PLN00020 ribulose bisphosphate 97.8 0.00048 1E-08 67.9 13.1 151 209-386 146-333 (413)
145 PRK06871 DNA polymerase III su 97.7 0.0022 4.7E-08 63.4 17.6 89 291-386 106-198 (325)
146 PRK04132 replication factor C 97.7 0.00092 2E-08 73.8 16.0 153 216-388 569-728 (846)
147 TIGR00767 rho transcription te 97.7 6.4E-05 1.4E-09 75.2 6.3 93 210-304 167-267 (415)
148 PRK06090 DNA polymerase III su 97.7 0.0041 8.9E-08 61.3 18.6 105 292-409 108-216 (319)
149 PRK09183 transposase/IS protei 97.7 0.00018 3.9E-09 69.2 8.9 35 212-246 103-137 (259)
150 KOG0733 Nuclear AAA ATPase (VC 97.7 0.00063 1.4E-08 70.2 12.8 173 187-384 189-395 (802)
151 KOG0991 Replication factor C, 97.7 0.00024 5.2E-09 64.6 8.6 55 181-237 20-74 (333)
152 COG0466 Lon ATP-dependent Lon 97.6 0.00027 5.9E-09 74.4 10.2 156 187-360 322-508 (782)
153 PRK06526 transposase; Provisio 97.6 0.00012 2.6E-09 70.0 6.8 33 212-244 99-131 (254)
154 KOG0735 AAA+-type ATPase [Post 97.6 0.001 2.2E-08 70.0 13.7 160 211-391 431-616 (952)
155 KOG0741 AAA+-type ATPase [Post 97.6 0.0013 2.7E-08 66.9 14.0 125 210-359 537-685 (744)
156 PRK06921 hypothetical protein; 97.6 0.00016 3.5E-09 69.7 7.7 36 211-246 117-153 (266)
157 KOG2004 Mitochondrial ATP-depe 97.6 0.00027 5.8E-09 74.2 9.2 156 188-360 411-596 (906)
158 PRK09361 radB DNA repair and r 97.6 0.00018 3.9E-09 68.0 7.4 49 198-246 10-58 (225)
159 PRK10536 hypothetical protein; 97.6 0.00042 9.2E-09 65.3 9.7 54 188-245 55-110 (262)
160 TIGR03346 chaperone_ClpB ATP-d 97.6 0.0041 8.8E-08 70.3 19.1 51 187-237 564-621 (852)
161 PF01695 IstB_IS21: IstB-like 97.6 7.6E-05 1.7E-09 67.4 4.3 35 212-246 48-82 (178)
162 cd01131 PilT Pilus retraction 97.6 0.00027 5.8E-09 65.2 7.9 108 213-332 3-111 (198)
163 PF07693 KAP_NTPase: KAP famil 97.5 0.0044 9.5E-08 62.0 17.3 44 195-238 3-47 (325)
164 COG2607 Predicted ATPase (AAA+ 97.5 0.0012 2.6E-08 60.6 11.6 59 185-243 57-117 (287)
165 KOG0730 AAA+-type ATPase [Post 97.5 0.0009 2E-08 69.9 12.0 152 209-385 466-637 (693)
166 PRK06964 DNA polymerase III su 97.5 0.01 2.2E-07 59.2 19.1 88 292-389 132-223 (342)
167 KOG1514 Origin recognition com 97.5 0.0023 4.9E-08 67.5 14.6 202 186-395 394-625 (767)
168 TIGR02639 ClpA ATP-dependent C 97.5 0.0024 5.3E-08 70.9 16.0 50 187-236 453-509 (731)
169 PRK10787 DNA-binding ATP-depen 97.5 0.0025 5.4E-08 70.7 15.8 184 163-360 286-506 (784)
170 TIGR00763 lon ATP-dependent pr 97.5 0.00092 2E-08 74.7 12.5 52 188-239 320-375 (775)
171 PRK10865 protein disaggregatio 97.5 0.0028 6.1E-08 71.3 16.3 51 187-237 567-624 (857)
172 COG1484 DnaC DNA replication p 97.5 0.00064 1.4E-08 65.1 9.7 37 210-246 104-140 (254)
173 TIGR02237 recomb_radB DNA repa 97.5 0.00019 4E-09 67.0 5.9 45 202-246 3-47 (209)
174 PRK11331 5-methylcytosine-spec 97.5 0.00022 4.8E-09 72.6 6.5 46 188-237 175-220 (459)
175 PF13177 DNA_pol3_delta2: DNA 97.5 0.0015 3.3E-08 58.0 11.3 138 192-348 1-162 (162)
176 KOG2228 Origin recognition com 97.4 0.0014 3E-08 63.2 11.2 173 187-360 23-219 (408)
177 cd01394 radB RadB. The archaea 97.4 0.00036 7.7E-09 65.5 7.3 50 197-246 5-54 (218)
178 PRK08939 primosomal protein Dn 97.4 0.00068 1.5E-08 66.7 9.1 36 211-246 156-191 (306)
179 PRK06835 DNA replication prote 97.4 0.00086 1.9E-08 66.6 9.7 35 212-246 184-218 (329)
180 KOG2035 Replication factor C, 97.4 0.0055 1.2E-07 57.5 14.1 207 188-410 13-258 (351)
181 KOG1969 DNA replication checkp 97.4 0.0022 4.9E-08 67.7 12.8 77 208-304 323-399 (877)
182 PF04665 Pox_A32: Poxvirus A32 97.4 0.00065 1.4E-08 63.7 8.2 34 213-246 15-48 (241)
183 PRK06067 flagellar accessory p 97.4 0.0011 2.3E-08 63.1 9.8 50 197-246 11-60 (234)
184 COG0470 HolB ATPase involved i 97.4 0.0015 3.3E-08 65.3 11.4 142 190-351 3-172 (325)
185 COG0542 clpA ATP-binding subun 97.4 0.0012 2.7E-08 71.4 11.1 118 187-314 490-617 (786)
186 KOG0733 Nuclear AAA ATPase (VC 97.4 0.0031 6.7E-08 65.4 13.2 129 211-361 545-693 (802)
187 PRK08699 DNA polymerase III su 97.4 0.0093 2E-07 59.3 16.4 85 293-387 114-202 (325)
188 cd01393 recA_like RecA is a b 97.3 0.0013 2.9E-08 62.0 10.0 49 198-246 6-60 (226)
189 TIGR02902 spore_lonB ATP-depen 97.3 0.0017 3.6E-08 69.2 11.5 46 187-234 64-109 (531)
190 PRK04296 thymidine kinase; Pro 97.3 0.00053 1.1E-08 62.8 6.4 110 212-330 3-116 (190)
191 PF14532 Sigma54_activ_2: Sigm 97.3 0.0002 4.3E-09 61.9 3.3 46 191-236 1-46 (138)
192 cd01120 RecA-like_NTPases RecA 97.3 0.0011 2.5E-08 58.6 8.4 33 214-246 2-34 (165)
193 COG1066 Sms Predicted ATP-depe 97.3 0.0017 3.6E-08 64.4 9.9 98 196-301 78-177 (456)
194 TIGR01817 nifA Nif-specific re 97.3 0.0047 1E-07 66.3 14.1 52 185-236 193-244 (534)
195 PRK10733 hflB ATP-dependent me 97.3 0.0034 7.4E-08 68.5 13.1 127 212-360 186-335 (644)
196 cd01121 Sms Sms (bacterial rad 97.2 0.0016 3.4E-08 65.8 9.7 50 197-246 68-117 (372)
197 TIGR03877 thermo_KaiC_1 KaiC d 97.2 0.0032 7E-08 59.8 11.3 50 197-246 7-56 (237)
198 PRK11034 clpA ATP-dependent Cl 97.2 0.0046 9.9E-08 68.2 13.7 49 188-236 458-513 (758)
199 TIGR01420 pilT_fam pilus retra 97.2 0.00089 1.9E-08 67.4 7.5 108 211-330 122-230 (343)
200 TIGR03345 VI_ClpV1 type VI sec 97.2 0.0022 4.8E-08 72.0 11.3 50 188-237 566-622 (852)
201 COG0542 clpA ATP-binding subun 97.2 0.011 2.5E-07 64.2 16.1 154 186-359 168-345 (786)
202 cd01123 Rad51_DMC1_radA Rad51_ 97.2 0.0013 2.7E-08 62.6 8.1 48 199-246 7-60 (235)
203 PRK05541 adenylylsulfate kinas 97.2 0.0015 3.3E-08 59.0 8.3 37 210-246 6-42 (176)
204 PF03215 Rad17: Rad17 cell cyc 97.2 0.0022 4.7E-08 67.6 10.4 54 183-236 14-70 (519)
205 PF13207 AAA_17: AAA domain; P 97.1 0.00035 7.6E-09 58.8 3.3 23 213-235 1-23 (121)
206 KOG0731 AAA+-type ATPase conta 97.1 0.0054 1.2E-07 66.1 12.8 178 186-387 309-520 (774)
207 cd00561 CobA_CobO_BtuR ATP:cor 97.1 0.0011 2.3E-08 58.2 6.3 117 213-330 4-138 (159)
208 CHL00095 clpC Clp protease ATP 97.1 0.0037 8E-08 70.4 12.1 50 187-236 508-564 (821)
209 PRK12608 transcription termina 97.1 0.0018 4E-08 64.5 8.6 101 200-303 123-231 (380)
210 COG0464 SpoVK ATPases of the A 97.1 0.0064 1.4E-07 64.6 13.2 151 210-383 275-445 (494)
211 PRK14974 cell division protein 97.1 0.0035 7.6E-08 62.3 10.3 29 210-238 139-167 (336)
212 PF10236 DAP3: Mitochondrial r 97.1 0.025 5.4E-07 55.9 16.3 48 341-388 258-306 (309)
213 PHA00729 NTP-binding motif con 97.1 0.0018 3.9E-08 60.0 7.6 27 210-236 16-42 (226)
214 PRK11608 pspF phage shock prot 97.1 0.0072 1.6E-07 60.3 12.5 47 188-234 6-52 (326)
215 cd00983 recA RecA is a bacter 97.1 0.0014 2.9E-08 64.6 7.0 50 197-246 40-90 (325)
216 smart00763 AAA_PrkA PrkA AAA d 97.1 0.00077 1.7E-08 66.8 5.3 49 189-237 52-104 (361)
217 PRK09354 recA recombinase A; P 97.1 0.0014 3.1E-08 65.0 7.1 99 197-302 45-148 (349)
218 PRK11889 flhF flagellar biosyn 97.1 0.0065 1.4E-07 60.9 11.7 37 210-246 240-276 (436)
219 KOG0739 AAA+-type ATPase [Post 97.1 0.016 3.4E-07 55.1 13.4 172 188-385 133-335 (439)
220 PRK00771 signal recognition pa 97.0 0.005 1.1E-07 63.4 11.2 29 210-238 94-122 (437)
221 PRK08118 topology modulation p 97.0 0.0005 1.1E-08 61.5 3.4 24 213-236 3-26 (167)
222 PRK04328 hypothetical protein; 97.0 0.0048 1E-07 59.1 10.4 49 198-246 10-58 (249)
223 TIGR01650 PD_CobS cobaltochela 97.0 0.017 3.6E-07 56.8 14.1 52 185-240 42-93 (327)
224 TIGR02974 phageshock_pspF psp 97.0 0.006 1.3E-07 60.9 11.3 46 190-235 1-46 (329)
225 TIGR02012 tigrfam_recA protein 97.0 0.0016 3.4E-08 64.1 6.9 50 197-246 40-90 (321)
226 PTZ00494 tuzin-like protein; P 97.0 0.046 1E-06 55.1 16.8 180 169-360 346-544 (664)
227 KOG1970 Checkpoint RAD17-RFC c 97.0 0.017 3.7E-07 59.4 14.0 43 194-236 88-135 (634)
228 cd01129 PulE-GspE PulE/GspE Th 97.0 0.0026 5.6E-08 61.4 7.9 101 196-311 68-168 (264)
229 TIGR00064 ftsY signal recognit 97.0 0.0026 5.6E-08 61.6 7.8 37 210-246 71-107 (272)
230 cd01133 F1-ATPase_beta F1 ATP 97.0 0.002 4.4E-08 61.6 6.9 55 210-266 68-122 (274)
231 PRK11823 DNA repair protein Ra 96.9 0.0042 9.1E-08 64.6 9.8 51 196-246 65-115 (446)
232 PRK06696 uridine kinase; Valid 96.9 0.0012 2.7E-08 62.1 5.4 46 193-238 3-49 (223)
233 PF02562 PhoH: PhoH-like prote 96.9 0.0038 8.3E-08 57.2 8.3 113 210-330 18-156 (205)
234 TIGR03881 KaiC_arch_4 KaiC dom 96.9 0.0046 1E-07 58.5 9.3 49 198-246 7-55 (229)
235 PRK08533 flagellar accessory p 96.9 0.0038 8.3E-08 58.9 8.6 49 198-246 11-59 (230)
236 KOG0734 AAA+-type ATPase conta 96.9 0.0081 1.8E-07 61.4 11.1 151 188-360 304-484 (752)
237 COG4088 Predicted nucleotide k 96.9 0.0047 1E-07 55.4 8.3 29 212-240 2-30 (261)
238 PRK15429 formate hydrogenlyase 96.9 0.017 3.6E-07 64.0 14.7 49 188-236 376-424 (686)
239 KOG0727 26S proteasome regulat 96.9 0.025 5.4E-07 52.4 13.0 51 189-239 156-217 (408)
240 KOG3928 Mitochondrial ribosome 96.9 0.019 4.1E-07 57.0 12.9 57 339-395 403-460 (461)
241 PRK07667 uridine kinase; Provi 96.9 0.0019 4.2E-08 59.2 5.9 42 197-238 3-44 (193)
242 PRK07261 topology modulation p 96.9 0.004 8.7E-08 55.9 7.7 23 213-235 2-24 (171)
243 COG1618 Predicted nucleotide k 96.9 0.0012 2.6E-08 56.8 3.9 37 213-249 7-45 (179)
244 PRK05022 anaerobic nitric oxid 96.8 0.025 5.4E-07 60.3 14.8 50 187-236 186-235 (509)
245 cd03247 ABCC_cytochrome_bd The 96.8 0.011 2.3E-07 53.5 10.5 125 210-344 27-169 (178)
246 PF01583 APS_kinase: Adenylyls 96.8 0.0014 3E-08 57.3 4.4 36 211-246 2-37 (156)
247 COG4608 AppF ABC-type oligopep 96.8 0.0037 8E-08 59.0 7.4 125 210-336 38-176 (268)
248 TIGR00416 sms DNA repair prote 96.8 0.0054 1.2E-07 63.9 9.4 52 195-246 78-129 (454)
249 KOG0728 26S proteasome regulat 96.8 0.029 6.2E-07 51.9 12.7 147 192-360 151-331 (404)
250 PF13604 AAA_30: AAA domain; P 96.8 0.0087 1.9E-07 55.0 9.7 46 196-244 6-51 (196)
251 PF00448 SRP54: SRP54-type pro 96.8 0.0021 4.5E-08 59.0 5.5 35 212-246 2-36 (196)
252 PF08423 Rad51: Rad51; InterP 96.8 0.0021 4.5E-08 61.7 5.7 49 198-246 25-79 (256)
253 cd03238 ABC_UvrA The excision 96.8 0.0076 1.7E-07 54.2 8.9 23 210-232 20-42 (176)
254 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.8 0.006 1.3E-07 53.0 8.0 105 210-335 25-132 (144)
255 PRK06762 hypothetical protein; 96.8 0.0081 1.8E-07 53.6 9.1 24 212-235 3-26 (166)
256 cd03228 ABCC_MRP_Like The MRP 96.7 0.0077 1.7E-07 54.1 8.6 129 210-344 27-167 (171)
257 PF13671 AAA_33: AAA domain; P 96.7 0.0042 9.2E-08 53.8 6.5 24 213-236 1-24 (143)
258 CHL00206 ycf2 Ycf2; Provisiona 96.7 0.017 3.7E-07 68.0 12.7 27 210-236 1629-1655(2281)
259 cd03223 ABCD_peroxisomal_ALDP 96.7 0.01 2.2E-07 53.1 8.9 126 210-344 26-160 (166)
260 KOG0743 AAA+-type ATPase [Post 96.7 0.041 8.8E-07 55.6 13.7 150 211-395 235-413 (457)
261 cd03214 ABC_Iron-Siderophores_ 96.7 0.0064 1.4E-07 55.1 7.7 123 210-334 24-162 (180)
262 TIGR00708 cobA cob(I)alamin ad 96.7 0.0078 1.7E-07 53.5 7.8 118 212-330 6-140 (173)
263 KOG0735 AAA+-type ATPase [Post 96.6 0.035 7.6E-07 58.8 13.5 174 189-387 668-872 (952)
264 cd02027 APSK Adenosine 5'-phos 96.6 0.012 2.6E-07 51.4 8.9 24 213-236 1-24 (149)
265 TIGR02655 circ_KaiC circadian 96.6 0.0043 9.3E-08 65.5 6.9 101 195-302 247-363 (484)
266 COG2805 PilT Tfp pilus assembl 96.6 0.009 2E-07 56.9 8.2 95 210-313 124-219 (353)
267 PLN03187 meiotic recombination 96.6 0.0046 1E-07 61.6 6.5 49 198-246 113-167 (344)
268 PRK05986 cob(I)alamin adenolsy 96.6 0.0068 1.5E-07 54.7 6.9 119 211-330 22-158 (191)
269 cd00544 CobU Adenosylcobinamid 96.6 0.058 1.3E-06 48.2 12.8 79 214-301 2-82 (169)
270 PRK05973 replicative DNA helic 96.5 0.012 2.5E-07 55.5 8.5 38 209-246 62-99 (237)
271 cd01130 VirB11-like_ATPase Typ 96.5 0.0017 3.7E-08 59.3 2.8 94 211-312 25-120 (186)
272 PF13238 AAA_18: AAA domain; P 96.5 0.002 4.3E-08 54.6 3.1 22 214-235 1-22 (129)
273 cd03216 ABC_Carb_Monos_I This 96.5 0.0075 1.6E-07 53.7 6.8 119 210-335 25-147 (163)
274 PRK15455 PrkA family serine pr 96.5 0.0025 5.4E-08 66.6 4.1 51 188-238 76-130 (644)
275 PRK00889 adenylylsulfate kinas 96.5 0.015 3.2E-07 52.4 8.9 36 210-245 3-38 (175)
276 PRK12724 flagellar biosynthesi 96.5 0.037 8E-07 56.2 12.4 25 211-235 223-247 (432)
277 COG2884 FtsE Predicted ATPase 96.5 0.02 4.3E-07 51.0 9.1 58 280-337 143-204 (223)
278 COG0468 RecA RecA/RadA recombi 96.5 0.0077 1.7E-07 57.9 7.2 48 199-246 48-95 (279)
279 cd03222 ABC_RNaseL_inhibitor T 96.5 0.012 2.5E-07 53.1 8.0 116 210-345 24-146 (177)
280 TIGR02858 spore_III_AA stage I 96.5 0.022 4.7E-07 55.0 10.3 115 211-332 111-231 (270)
281 cd03115 SRP The signal recogni 96.5 0.0079 1.7E-07 54.1 6.9 34 213-246 2-35 (173)
282 COG0465 HflB ATP-dependent Zn 96.5 0.026 5.6E-07 59.8 11.5 176 186-386 148-356 (596)
283 PRK12723 flagellar biosynthesi 96.5 0.022 4.7E-07 57.8 10.7 27 210-236 173-199 (388)
284 PF00485 PRK: Phosphoribulokin 96.5 0.0023 5.1E-08 58.8 3.4 26 213-238 1-26 (194)
285 KOG0736 Peroxisome assembly fa 96.5 0.038 8.3E-07 59.1 12.6 50 189-238 673-732 (953)
286 PRK14722 flhF flagellar biosyn 96.5 0.027 5.8E-07 56.7 11.2 29 210-238 136-164 (374)
287 cd03246 ABCC_Protease_Secretio 96.5 0.012 2.6E-07 52.9 8.0 27 210-236 27-53 (173)
288 COG0488 Uup ATPase components 96.5 0.19 4E-06 53.3 17.9 133 211-346 348-511 (530)
289 COG0563 Adk Adenylate kinase a 96.5 0.0099 2.1E-07 53.6 7.3 23 213-235 2-24 (178)
290 KOG0652 26S proteasome regulat 96.4 0.06 1.3E-06 50.2 12.3 147 188-360 171-355 (424)
291 cd01122 GP4d_helicase GP4d_hel 96.4 0.02 4.4E-07 55.6 10.1 38 209-246 28-66 (271)
292 PRK07132 DNA polymerase III su 96.4 0.41 8.9E-06 47.0 19.0 165 198-390 6-184 (299)
293 PRK04301 radA DNA repair and r 96.4 0.012 2.6E-07 58.6 8.4 49 198-246 89-143 (317)
294 TIGR02524 dot_icm_DotB Dot/Icm 96.4 0.0059 1.3E-07 61.5 6.2 95 211-311 134-231 (358)
295 TIGR01069 mutS2 MutS2 family p 96.4 0.0043 9.4E-08 68.8 5.7 24 211-234 322-345 (771)
296 PRK05703 flhF flagellar biosyn 96.4 0.037 8.1E-07 57.1 12.1 36 211-246 221-258 (424)
297 TIGR01425 SRP54_euk signal rec 96.4 0.08 1.7E-06 54.3 14.2 36 210-245 99-134 (429)
298 TIGR02236 recomb_radA DNA repa 96.4 0.015 3.2E-07 57.8 8.8 49 198-246 82-136 (310)
299 COG1136 SalX ABC-type antimicr 96.4 0.03 6.6E-07 52.0 10.1 63 280-345 148-216 (226)
300 COG0572 Udk Uridine kinase [Nu 96.4 0.0066 1.4E-07 55.7 5.7 30 209-238 6-35 (218)
301 cd03281 ABC_MSH5_euk MutS5 hom 96.4 0.004 8.6E-08 58.1 4.4 23 211-233 29-51 (213)
302 COG3910 Predicted ATPase [Gene 96.4 0.027 5.9E-07 50.0 9.1 24 210-233 36-59 (233)
303 PF03969 AFG1_ATPase: AFG1-lik 96.4 0.0089 1.9E-07 60.2 7.2 100 210-327 61-165 (362)
304 PF08433 KTI12: Chromatin asso 96.4 0.0054 1.2E-07 59.2 5.3 35 212-246 2-36 (270)
305 PRK13531 regulatory ATPase Rav 96.3 0.0031 6.8E-08 64.9 3.8 46 188-237 20-65 (498)
306 smart00534 MUTSac ATPase domai 96.3 0.0019 4E-08 58.9 2.0 21 213-233 1-21 (185)
307 cd02019 NK Nucleoside/nucleoti 96.3 0.003 6.4E-08 47.2 2.7 23 213-235 1-23 (69)
308 TIGR02238 recomb_DMC1 meiotic 96.3 0.014 3E-07 57.7 8.2 50 197-246 82-137 (313)
309 PF00437 T2SE: Type II/IV secr 96.3 0.003 6.6E-08 61.4 3.5 121 189-328 105-230 (270)
310 PF10137 TIR-like: Predicted n 96.3 0.011 2.4E-07 49.5 6.3 60 19-81 1-61 (125)
311 KOG0729 26S proteasome regulat 96.3 0.033 7.1E-07 52.0 9.8 48 190-237 179-237 (435)
312 PRK13539 cytochrome c biogenes 96.3 0.016 3.5E-07 53.8 8.1 26 210-235 27-52 (207)
313 PRK12726 flagellar biosynthesi 96.3 0.034 7.5E-07 55.6 10.6 37 210-246 205-241 (407)
314 TIGR02788 VirB11 P-type DNA tr 96.3 0.0082 1.8E-07 59.5 6.3 94 210-311 143-237 (308)
315 TIGR03499 FlhF flagellar biosy 96.3 0.019 4.2E-07 56.0 8.9 37 210-246 193-231 (282)
316 COG4618 ArpD ABC-type protease 96.3 0.0092 2E-07 60.8 6.6 23 211-233 362-384 (580)
317 PF00910 RNA_helicase: RNA hel 96.3 0.0023 5E-08 52.5 2.0 25 214-238 1-25 (107)
318 PF07726 AAA_3: ATPase family 96.3 0.0035 7.5E-08 52.4 3.0 31 214-244 2-32 (131)
319 cd03230 ABC_DR_subfamily_A Thi 96.3 0.024 5.2E-07 50.9 8.8 35 210-245 25-59 (173)
320 COG0529 CysC Adenylylsulfate k 96.3 0.0059 1.3E-07 53.6 4.4 37 210-246 22-58 (197)
321 TIGR03878 thermo_KaiC_2 KaiC d 96.2 0.0061 1.3E-07 58.7 5.1 41 206-246 31-71 (259)
322 PRK08233 hypothetical protein; 96.2 0.0037 8.1E-08 56.7 3.4 26 211-236 3-28 (182)
323 PF00406 ADK: Adenylate kinase 96.2 0.032 6.9E-07 48.9 9.3 88 216-312 1-94 (151)
324 COG0467 RAD55 RecA-superfamily 96.2 0.011 2.4E-07 57.1 6.9 47 200-246 12-58 (260)
325 cd00984 DnaB_C DnaB helicase C 96.2 0.032 6.9E-07 53.1 10.0 40 207-246 9-49 (242)
326 TIGR02525 plasmid_TraJ plasmid 96.2 0.0082 1.8E-07 60.6 6.0 93 212-311 150-244 (372)
327 PRK05342 clpX ATP-dependent pr 96.2 0.011 2.4E-07 60.6 7.0 26 212-237 109-134 (412)
328 cd02021 GntK Gluconate kinase 96.2 0.032 6.9E-07 48.8 8.8 23 213-235 1-23 (150)
329 PRK05480 uridine/cytidine kina 96.2 0.0049 1.1E-07 57.4 3.8 26 210-235 5-30 (209)
330 PRK09302 circadian clock prote 96.1 0.018 3.8E-07 61.5 8.4 53 194-246 14-67 (509)
331 PRK11388 DNA-binding transcrip 96.1 0.091 2E-06 57.8 14.1 49 187-235 324-372 (638)
332 PTZ00301 uridine kinase; Provi 96.1 0.0048 1E-07 57.2 3.5 28 211-238 3-30 (210)
333 PF07728 AAA_5: AAA domain (dy 96.1 0.006 1.3E-07 52.6 3.9 23 214-236 2-24 (139)
334 PRK04040 adenylate kinase; Pro 96.1 0.0062 1.4E-07 55.5 4.1 25 212-236 3-27 (188)
335 TIGR03574 selen_PSTK L-seryl-t 96.1 0.01 2.3E-07 56.8 5.9 26 213-238 1-26 (249)
336 PRK03839 putative kinase; Prov 96.1 0.005 1.1E-07 55.8 3.5 24 213-236 2-25 (180)
337 cd00267 ABC_ATPase ABC (ATP-bi 96.1 0.013 2.9E-07 51.7 6.1 125 211-344 25-153 (157)
338 TIGR02533 type_II_gspE general 96.1 0.016 3.5E-07 60.8 7.7 99 197-311 231-330 (486)
339 PF03308 ArgK: ArgK protein; 96.1 0.0092 2E-07 56.1 5.2 41 198-238 16-56 (266)
340 TIGR00235 udk uridine kinase. 96.1 0.0058 1.2E-07 56.8 3.9 28 209-236 4-31 (207)
341 cd03232 ABC_PDR_domain2 The pl 96.1 0.041 9E-07 50.4 9.6 25 210-234 32-56 (192)
342 PTZ00035 Rad51 protein; Provis 96.1 0.019 4E-07 57.5 7.7 39 197-235 104-142 (337)
343 TIGR00150 HI0065_YjeE ATPase, 96.1 0.0073 1.6E-07 51.3 4.1 40 197-236 8-47 (133)
344 TIGR02239 recomb_RAD51 DNA rep 96.1 0.024 5.1E-07 56.2 8.3 39 196-234 81-119 (316)
345 PRK00131 aroK shikimate kinase 96.1 0.0057 1.2E-07 54.9 3.6 26 211-236 4-29 (175)
346 COG1121 ZnuC ABC-type Mn/Zn tr 96.0 0.032 6.9E-07 52.7 8.6 52 282-335 147-204 (254)
347 cd03237 ABC_RNaseL_inhibitor_d 96.0 0.043 9.4E-07 52.4 9.8 26 210-235 24-49 (246)
348 KOG0927 Predicted transporter 96.0 0.46 1E-05 49.2 17.3 25 211-235 416-440 (614)
349 COG2274 SunT ABC-type bacterio 96.0 0.049 1.1E-06 59.7 11.2 25 210-234 498-522 (709)
350 PRK10416 signal recognition pa 96.0 0.019 4.2E-07 56.8 7.4 36 210-245 113-148 (318)
351 cd01858 NGP_1 NGP-1. Autoanti 96.0 0.045 9.7E-07 48.3 9.1 23 212-234 103-125 (157)
352 cd03287 ABC_MSH3_euk MutS3 hom 96.0 0.0085 1.8E-07 56.1 4.6 24 210-233 30-53 (222)
353 cd03283 ABC_MutS-like MutS-lik 96.0 0.01 2.2E-07 54.7 5.0 24 212-235 26-49 (199)
354 cd03217 ABC_FeS_Assembly ABC-t 96.0 0.033 7.3E-07 51.4 8.5 25 210-234 25-49 (200)
355 PRK09270 nucleoside triphospha 96.0 0.0088 1.9E-07 56.6 4.7 31 209-239 31-61 (229)
356 PF07724 AAA_2: AAA domain (Cd 96.0 0.0084 1.8E-07 53.7 4.3 36 211-246 3-39 (171)
357 COG4133 CcmA ABC-type transpor 96.0 0.06 1.3E-06 47.9 9.4 34 211-244 28-61 (209)
358 cd01125 repA Hexameric Replica 96.0 0.055 1.2E-06 51.5 10.2 24 213-236 3-26 (239)
359 PF06745 KaiC: KaiC; InterPro 95.9 0.0064 1.4E-07 57.4 3.5 49 198-246 6-55 (226)
360 COG0396 sufC Cysteine desulfur 95.9 0.034 7.3E-07 51.1 7.9 59 282-342 152-216 (251)
361 PLN03186 DNA repair protein RA 95.9 0.022 4.9E-07 56.8 7.5 52 195-246 107-164 (342)
362 KOG0651 26S proteasome regulat 95.9 0.034 7.3E-07 53.3 8.1 30 210-239 165-194 (388)
363 TIGR00455 apsK adenylylsulfate 95.9 0.034 7.4E-07 50.5 8.2 28 210-237 17-44 (184)
364 PRK14528 adenylate kinase; Pro 95.9 0.05 1.1E-06 49.5 9.2 23 213-235 3-25 (186)
365 cd03229 ABC_Class3 This class 95.9 0.027 5.8E-07 50.9 7.4 35 210-245 25-59 (178)
366 TIGR01360 aden_kin_iso1 adenyl 95.9 0.0065 1.4E-07 55.4 3.4 26 210-235 2-27 (188)
367 cd00227 CPT Chloramphenicol (C 95.9 0.0068 1.5E-07 54.7 3.4 25 212-236 3-27 (175)
368 cd03263 ABC_subfamily_A The AB 95.9 0.045 9.7E-07 51.3 9.1 26 210-235 27-52 (220)
369 cd03213 ABCG_EPDR ABCG transpo 95.9 0.07 1.5E-06 49.0 10.2 26 210-235 34-59 (194)
370 PF00625 Guanylate_kin: Guanyl 95.9 0.012 2.6E-07 53.5 5.0 36 211-246 2-37 (183)
371 TIGR01313 therm_gnt_kin carboh 95.9 0.036 7.8E-07 49.2 8.0 23 214-236 1-23 (163)
372 PRK09519 recA DNA recombinatio 95.9 0.018 3.8E-07 63.2 6.9 98 196-302 44-148 (790)
373 TIGR02329 propionate_PrpR prop 95.9 0.21 4.5E-06 53.1 14.8 48 188-235 212-259 (526)
374 TIGR03600 phage_DnaB phage rep 95.9 0.23 5.1E-06 51.6 15.1 73 190-269 174-247 (421)
375 TIGR02782 TrbB_P P-type conjug 95.9 0.026 5.5E-07 55.5 7.5 89 212-312 133-224 (299)
376 TIGR00390 hslU ATP-dependent p 95.9 0.021 4.7E-07 57.7 7.0 52 188-239 12-75 (441)
377 PRK00625 shikimate kinase; Pro 95.9 0.007 1.5E-07 54.3 3.3 23 214-236 3-25 (173)
378 COG3854 SpoIIIAA ncharacterize 95.9 0.05 1.1E-06 49.9 8.6 108 214-330 140-253 (308)
379 TIGR03575 selen_PSTK_euk L-ser 95.9 0.07 1.5E-06 53.1 10.5 23 214-236 2-24 (340)
380 PRK06547 hypothetical protein; 95.9 0.0085 1.8E-07 53.7 3.7 27 209-235 13-39 (172)
381 cd02025 PanK Pantothenate kina 95.9 0.027 5.8E-07 52.8 7.3 24 213-236 1-24 (220)
382 TIGR00382 clpX endopeptidase C 95.8 0.026 5.6E-07 57.7 7.6 27 212-238 117-143 (413)
383 PRK03846 adenylylsulfate kinas 95.8 0.012 2.5E-07 54.4 4.6 38 209-246 22-59 (198)
384 cd03243 ABC_MutS_homologs The 95.8 0.0069 1.5E-07 56.0 3.1 22 212-233 30-51 (202)
385 PF00154 RecA: recA bacterial 95.8 0.043 9.2E-07 54.0 8.7 102 198-304 39-143 (322)
386 PF03266 NTPase_1: NTPase; In 95.8 0.0063 1.4E-07 54.3 2.7 24 214-237 2-25 (168)
387 cd02028 UMPK_like Uridine mono 95.8 0.0089 1.9E-07 54.1 3.6 26 213-238 1-26 (179)
388 PF00158 Sigma54_activat: Sigm 95.8 0.011 2.4E-07 52.7 4.2 46 190-235 1-46 (168)
389 COG2401 ABC-type ATPase fused 95.8 0.021 4.6E-07 56.8 6.4 132 211-342 409-580 (593)
390 PRK05917 DNA polymerase III su 95.8 0.37 8E-06 46.8 14.8 126 198-347 7-154 (290)
391 PRK10923 glnG nitrogen regulat 95.8 0.093 2E-06 55.4 11.9 48 188-235 138-185 (469)
392 PRK11174 cysteine/glutathione 95.8 0.049 1.1E-06 59.4 10.0 26 210-235 375-400 (588)
393 COG1703 ArgK Putative periplas 95.8 0.015 3.2E-07 55.6 5.1 43 198-240 38-80 (323)
394 cd03233 ABC_PDR_domain1 The pl 95.8 0.065 1.4E-06 49.5 9.4 27 210-236 32-58 (202)
395 COG1102 Cmk Cytidylate kinase 95.8 0.0085 1.8E-07 51.8 3.1 25 213-237 2-26 (179)
396 PRK09302 circadian clock prote 95.7 0.027 5.8E-07 60.1 7.6 52 195-246 257-308 (509)
397 PTZ00088 adenylate kinase 1; P 95.7 0.03 6.5E-07 52.7 7.1 22 214-235 9-30 (229)
398 PF13481 AAA_25: AAA domain; P 95.7 0.04 8.6E-07 50.4 7.8 27 211-237 32-58 (193)
399 COG1120 FepC ABC-type cobalami 95.7 0.049 1.1E-06 51.7 8.3 26 210-235 27-52 (258)
400 cd03282 ABC_MSH4_euk MutS4 hom 95.7 0.017 3.7E-07 53.4 5.2 24 210-233 28-51 (204)
401 TIGR01359 UMP_CMP_kin_fam UMP- 95.7 0.0072 1.6E-07 54.9 2.7 23 213-235 1-23 (183)
402 PRK10463 hydrogenase nickel in 95.7 0.038 8.1E-07 53.5 7.5 36 209-244 102-137 (290)
403 PRK10436 hypothetical protein; 95.7 0.038 8.1E-07 57.6 8.1 99 197-311 207-306 (462)
404 PF06068 TIP49: TIP49 C-termin 95.6 0.016 3.4E-07 57.3 4.9 58 186-243 22-82 (398)
405 PRK13947 shikimate kinase; Pro 95.6 0.0095 2.1E-07 53.4 3.3 25 213-237 3-27 (171)
406 PRK13657 cyclic beta-1,2-gluca 95.6 0.059 1.3E-06 58.7 10.0 26 210-235 360-385 (588)
407 PF13245 AAA_19: Part of AAA d 95.6 0.02 4.3E-07 43.6 4.4 25 211-235 10-34 (76)
408 cd00071 GMPK Guanosine monopho 95.6 0.0089 1.9E-07 51.5 2.9 25 214-238 2-26 (137)
409 COG0488 Uup ATPase components 95.6 0.051 1.1E-06 57.5 9.0 53 282-336 161-216 (530)
410 PRK06217 hypothetical protein; 95.6 0.0099 2.1E-07 54.0 3.2 24 213-236 3-26 (183)
411 PRK13765 ATP-dependent proteas 95.6 0.014 3.1E-07 63.0 4.9 59 185-247 28-87 (637)
412 cd01857 HSR1_MMR1 HSR1/MMR1. 95.6 0.097 2.1E-06 45.2 9.3 47 62-110 3-49 (141)
413 TIGR00959 ffh signal recogniti 95.6 0.053 1.1E-06 55.8 8.7 27 210-236 98-124 (428)
414 PRK15115 response regulator Gl 95.6 0.24 5.2E-06 51.9 13.9 48 188-235 134-181 (444)
415 cd03278 ABC_SMC_barmotin Barmo 95.6 0.11 2.4E-06 47.8 10.0 21 213-233 24-44 (197)
416 cd02024 NRK1 Nicotinamide ribo 95.6 0.0087 1.9E-07 54.3 2.6 23 213-235 1-23 (187)
417 PRK10867 signal recognition pa 95.5 0.055 1.2E-06 55.8 8.7 29 210-238 99-127 (433)
418 TIGR02868 CydC thiol reductant 95.5 0.061 1.3E-06 57.8 9.6 26 210-235 360-385 (529)
419 cd01124 KaiC KaiC is a circadi 95.5 0.012 2.6E-07 53.5 3.6 33 214-246 2-34 (187)
420 PRK13764 ATPase; Provisional 95.5 0.03 6.6E-07 59.8 7.0 85 212-310 258-342 (602)
421 TIGR02322 phosphon_PhnN phosph 95.5 0.011 2.3E-07 53.6 3.2 25 212-236 2-26 (179)
422 TIGR01277 thiQ thiamine ABC tr 95.5 0.075 1.6E-06 49.5 9.0 26 210-235 23-48 (213)
423 PRK00409 recombination and DNA 95.5 0.012 2.6E-07 65.5 4.2 24 210-233 326-349 (782)
424 KOG0740 AAA+-type ATPase [Post 95.5 0.24 5.1E-06 50.4 12.9 29 211-239 186-214 (428)
425 PRK00279 adk adenylate kinase; 95.5 0.084 1.8E-06 49.3 9.3 24 213-236 2-25 (215)
426 KOG3354 Gluconate kinase [Carb 95.5 0.036 7.9E-07 47.4 5.9 29 211-239 12-40 (191)
427 TIGR01447 recD exodeoxyribonuc 95.5 0.058 1.3E-06 58.0 9.0 27 211-237 160-186 (586)
428 cd02020 CMPK Cytidine monophos 95.5 0.011 2.4E-07 51.4 3.0 24 213-236 1-24 (147)
429 PRK10875 recD exonuclease V su 95.5 0.075 1.6E-06 57.4 9.8 27 211-237 167-193 (615)
430 cd03369 ABCC_NFT1 Domain 2 of 95.5 0.2 4.4E-06 46.4 11.6 25 210-234 33-57 (207)
431 COG2804 PulE Type II secretory 95.5 0.038 8.2E-07 56.8 7.1 102 210-327 257-358 (500)
432 PF08298 AAA_PrkA: PrkA AAA do 95.5 0.035 7.5E-07 54.8 6.5 52 187-238 60-115 (358)
433 PRK14738 gmk guanylate kinase; 95.5 0.011 2.5E-07 54.8 3.1 29 206-234 8-36 (206)
434 TIGR03880 KaiC_arch_3 KaiC dom 95.5 0.024 5.2E-07 53.4 5.4 48 199-246 4-51 (224)
435 cd02023 UMPK Uridine monophosp 95.5 0.0098 2.1E-07 54.8 2.7 23 213-235 1-23 (198)
436 cd03240 ABC_Rad50 The catalyti 95.5 0.07 1.5E-06 49.4 8.4 20 213-232 24-43 (204)
437 cd03244 ABCC_MRP_domain2 Domai 95.4 0.12 2.6E-06 48.5 10.1 25 210-234 29-53 (221)
438 PRK05201 hslU ATP-dependent pr 95.4 0.03 6.4E-07 56.8 6.2 52 188-239 15-78 (443)
439 PF03205 MobB: Molybdopterin g 95.4 0.016 3.5E-07 50.0 3.8 35 212-246 1-36 (140)
440 cd03249 ABC_MTABC3_MDL1_MDL2 M 95.4 0.13 2.9E-06 48.7 10.5 26 210-235 28-53 (238)
441 cd03285 ABC_MSH2_euk MutS2 hom 95.4 0.014 3.1E-07 54.8 3.7 24 210-233 29-52 (222)
442 PRK11176 lipid transporter ATP 95.4 0.058 1.3E-06 58.7 9.0 26 210-235 368-393 (582)
443 COG2874 FlaH Predicted ATPases 95.4 0.14 2.9E-06 46.7 9.6 49 198-246 15-63 (235)
444 cd03289 ABCC_CFTR2 The CFTR su 95.4 0.13 2.9E-06 49.9 10.5 27 210-236 29-55 (275)
445 COG1124 DppF ABC-type dipeptid 95.4 0.015 3.2E-07 53.9 3.6 25 210-234 32-56 (252)
446 PF12775 AAA_7: P-loop contain 95.4 0.015 3.2E-07 56.4 3.7 27 211-237 33-59 (272)
447 COG0003 ArsA Predicted ATPase 95.4 0.021 4.6E-07 56.3 4.8 48 211-262 2-49 (322)
448 PRK15453 phosphoribulokinase; 95.4 0.02 4.4E-07 54.8 4.5 28 210-237 4-31 (290)
449 PRK08506 replicative DNA helic 95.3 0.17 3.6E-06 53.3 11.7 73 190-269 172-244 (472)
450 COG0714 MoxR-like ATPases [Gen 95.3 0.026 5.6E-07 56.5 5.5 53 188-244 24-76 (329)
451 TIGR00764 lon_rel lon-related 95.3 0.032 7E-07 60.4 6.5 56 187-246 17-73 (608)
452 PRK10751 molybdopterin-guanine 95.3 0.025 5.4E-07 50.4 4.7 29 210-238 5-33 (173)
453 cd00464 SK Shikimate kinase (S 95.3 0.015 3.2E-07 51.1 3.3 23 214-236 2-24 (154)
454 TIGR02538 type_IV_pilB type IV 95.3 0.053 1.1E-06 58.4 8.0 100 197-311 305-404 (564)
455 PRK05537 bifunctional sulfate 95.3 0.027 5.8E-07 60.4 5.7 50 188-237 369-418 (568)
456 cd03254 ABCC_Glucan_exporter_l 95.3 0.2 4.3E-06 47.3 11.1 26 210-235 28-53 (229)
457 PF06414 Zeta_toxin: Zeta toxi 95.3 0.041 8.9E-07 50.7 6.3 28 209-236 13-40 (199)
458 cd03250 ABCC_MRP_domain1 Domai 95.3 0.2 4.4E-06 46.3 11.0 26 210-235 30-55 (204)
459 PRK13900 type IV secretion sys 95.3 0.02 4.4E-07 57.0 4.5 96 211-312 160-255 (332)
460 COG1936 Predicted nucleotide k 95.3 0.013 2.9E-07 51.2 2.8 20 213-232 2-21 (180)
461 cd03280 ABC_MutS2 MutS2 homolo 95.3 0.015 3.3E-07 53.7 3.3 21 212-232 29-49 (200)
462 cd03300 ABC_PotA_N PotA is an 95.3 0.088 1.9E-06 49.8 8.7 26 210-235 25-50 (232)
463 PRK09435 membrane ATPase/prote 95.3 0.032 6.8E-07 55.4 5.7 40 199-238 44-83 (332)
464 PRK05439 pantothenate kinase; 95.3 0.019 4.2E-07 56.3 4.2 29 209-237 84-112 (311)
465 KOG0062 ATPase component of AB 95.3 0.053 1.1E-06 55.5 7.3 124 211-336 106-261 (582)
466 COG0194 Gmk Guanylate kinase [ 95.3 0.023 5.1E-07 50.5 4.3 25 211-235 4-28 (191)
467 PHA02244 ATPase-like protein 95.3 0.015 3.3E-07 57.8 3.5 47 188-238 96-146 (383)
468 PF02374 ArsA_ATPase: Anion-tr 95.3 0.018 3.9E-07 56.7 4.0 35 212-246 2-36 (305)
469 COG5635 Predicted NTPase (NACH 95.2 0.038 8.1E-07 62.4 6.9 225 213-442 224-481 (824)
470 PRK12727 flagellar biosynthesi 95.2 0.059 1.3E-06 56.3 7.6 29 210-238 349-377 (559)
471 PRK13949 shikimate kinase; Pro 95.2 0.017 3.8E-07 51.6 3.4 24 213-236 3-26 (169)
472 PRK13833 conjugal transfer pro 95.2 0.078 1.7E-06 52.5 8.1 87 213-312 146-235 (323)
473 COG1643 HrpA HrpA-like helicas 95.2 0.13 2.7E-06 57.2 10.4 69 195-271 53-121 (845)
474 COG1419 FlhF Flagellar GTP-bin 95.2 0.1 2.2E-06 52.4 8.8 26 211-236 203-228 (407)
475 COG1117 PstB ABC-type phosphat 95.1 0.22 4.8E-06 45.4 10.0 42 188-233 14-55 (253)
476 KOG0066 eIF2-interacting prote 95.1 0.42 9.2E-06 48.0 12.8 24 211-234 613-636 (807)
477 COG4619 ABC-type uncharacteriz 95.1 0.023 5E-07 49.5 3.7 33 212-244 30-62 (223)
478 TIGR02857 CydD thiol reductant 95.1 0.11 2.5E-06 55.7 10.0 25 210-234 347-371 (529)
479 KOG3347 Predicted nucleotide k 95.1 0.019 4E-07 48.9 3.0 24 212-235 8-31 (176)
480 PRK14530 adenylate kinase; Pro 95.1 0.019 4E-07 53.7 3.4 23 213-235 5-27 (215)
481 PRK13948 shikimate kinase; Pro 95.1 0.022 4.7E-07 51.6 3.7 28 210-237 9-36 (182)
482 PLN02674 adenylate kinase 95.1 0.21 4.5E-06 47.3 10.4 24 212-235 32-55 (244)
483 PRK12339 2-phosphoglycerate ki 95.1 0.02 4.4E-07 52.5 3.5 25 211-235 3-27 (197)
484 COG1224 TIP49 DNA helicase TIP 95.1 0.032 7E-07 54.4 4.9 56 185-240 36-94 (450)
485 TIGR03522 GldA_ABC_ATP gliding 95.1 0.16 3.5E-06 50.1 10.1 25 210-234 27-51 (301)
486 PRK13894 conjugal transfer ATP 95.1 0.075 1.6E-06 52.7 7.6 88 211-311 148-238 (319)
487 PRK13946 shikimate kinase; Pro 95.1 0.019 4.1E-07 52.2 3.3 26 211-236 10-35 (184)
488 TIGR03263 guanyl_kin guanylate 95.0 0.017 3.6E-07 52.3 2.8 24 212-235 2-25 (180)
489 TIGR01818 ntrC nitrogen regula 95.0 0.23 5.1E-06 52.3 11.9 49 188-236 134-182 (463)
490 PRK00300 gmk guanylate kinase; 95.0 0.02 4.3E-07 53.1 3.3 27 210-236 4-30 (205)
491 PF13086 AAA_11: AAA domain; P 95.0 0.027 5.9E-07 53.0 4.4 36 196-235 6-41 (236)
492 TIGR02655 circ_KaiC circadian 95.0 0.031 6.8E-07 59.0 5.2 49 198-246 8-57 (484)
493 smart00072 GuKc Guanylate kina 95.0 0.025 5.4E-07 51.4 3.9 30 211-240 2-31 (184)
494 PRK14737 gmk guanylate kinase; 95.0 0.022 4.8E-07 51.8 3.4 26 210-235 3-28 (186)
495 COG5008 PilU Tfp pilus assembl 95.0 0.08 1.7E-06 49.6 7.0 93 210-311 126-219 (375)
496 COG0378 HypB Ni2+-binding GTPa 95.0 0.026 5.6E-07 50.6 3.7 36 211-246 13-48 (202)
497 cd00820 PEPCK_HprK Phosphoenol 95.0 0.024 5.1E-07 46.1 3.2 22 211-232 15-36 (107)
498 TIGR02203 MsbA_lipidA lipid A 95.0 0.11 2.3E-06 56.5 9.4 26 210-235 357-382 (571)
499 PF02456 Adeno_IVa2: Adenoviru 95.0 0.16 3.6E-06 48.7 9.1 171 213-395 89-298 (369)
500 TIGR02768 TraA_Ti Ti-type conj 94.9 0.12 2.7E-06 57.4 9.7 27 212-238 369-395 (744)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=5.2e-88 Score=771.69 Aligned_cols=516 Identities=38% Similarity=0.663 Sum_probs=465.5
Q ss_pred CCCCcccEEEcCcccccccchHHHHHHHHhhCCCeeEeeCCCCCCCcchHHHHHHHHhcceEEEEeccCcccchhhHHHH
Q 009306 13 NPEIKYDVFLSFGGEDTRESFTSHLYSALSRETVETFIDDDLRRGDEISQSLLDAIEASSISIIIFSESYASSRWCLDEL 92 (538)
Q Consensus 13 ~~~~~~dvFiSy~~~D~~~~~~~~l~~~l~~~g~~~~~d~~~~~g~~~~~~i~~~i~~s~~~i~v~S~~y~~s~~c~~El 92 (538)
++.++|||||||+|+|+|++|++||+.+|.++||.+|.|+++++|+.|.+++.+||++|++.|+|||++|++|.||++||
T Consensus 8 ~~~~~~~vf~sfrg~d~r~~f~~hl~~~l~~~~i~~f~d~~~~~g~~~~~~l~~~i~~s~~~ivv~s~~ya~s~wcl~el 87 (1153)
T PLN03210 8 SRNWVYDVFPSFSGEDVRITFLSHFLKELDRKLIIAFKDNEIERSQSLDPELKQAIRDSRIAVVVFSKNYASSSWCLNEL 87 (1153)
T ss_pred CCCCCCcEEeeCCCcccccCHHHHHHHHHHHCCCeEEccCCccCCCcccHHHHHHHHhCeEEEEEecCCcccchHHHHHH
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCeEEEEEEeecCCcccccCCchHHHHHHHHhhC-hhhHHHHHHHhhhhccccCcccCCCChhhHHHHHH
Q 009306 93 LKILECKKEYAQIVVPVFYRVDPSHVRKQTGNFGDSFLKLEERF-PDKMQSWRNALTEAADLSGFDSLVVSPESALIEEI 171 (538)
Q Consensus 93 ~~~~~~~~~~~~~v~pv~~~v~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~w~~al~~~~~~~g~~~~~~~~e~~~i~~i 171 (538)
++|++|++..++.|+||||+|+|++||+|+|.|+++|.++.++. .+++++|++||++++++.|+++.....|+++|++|
T Consensus 88 ~~i~~~~~~~~~~v~pvfy~v~p~~v~~~~g~f~~~f~~~~~~~~~~~~~~w~~al~~~~~~~g~~~~~~~~E~~~i~~I 167 (1153)
T PLN03210 88 LEIVRCKEELGQLVIPVFYGLDPSHVRKQTGDFGEAFEKTCQNKTEDEKIQWKQALTDVANILGYHSQNWPNEAKMIEEI 167 (1153)
T ss_pred HHHHHhhhhcCceEEEEEecccHHHHhhccchHHHHHHHHhcccchhHHHHHHHHHHHHhCcCceecCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999987664 45699999999999999999997666699999999
Q ss_pred HHhhhccccccCCCCCCCceeccchhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeeh--h
Q 009306 172 VNAILKRLDDTFHSENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNV--R 249 (538)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~--~ 249 (538)
++++.+++...++...+++|||+.++++|..+|..+.+++++++|+||||+||||||+.+|+++..+|++.+|+... .
T Consensus 168 v~~v~~~l~~~~~~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~ 247 (1153)
T PLN03210 168 ANDVLGKLNLTPSNDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFIS 247 (1153)
T ss_pred HHHHHHhhccccCcccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccccc
Confidence 99999999988888889999999999999999987777899999999999999999999999999999998887531 1
Q ss_pred hh---hh------cCChHHHHHHHHHHHhcCCCCCCchhhcHHHHHHHhcCCCeEEEEecCCChHHHHHHhcCcCCCCCC
Q 009306 250 EA---EE------TCRLGDLRQQLLSTLLNDGNVKNFLNTDLNFQSRRLTRKKVLIVFDDVDHPRQIKILVGRLDLFASG 320 (538)
Q Consensus 250 ~~---~~------~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~~ 320 (538)
.. .. ......+.++++..+........ .....+++++.++|+||||||||+..+++.+.....++++|
T Consensus 248 ~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~---~~~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~G 324 (1153)
T PLN03210 248 KSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKI---YHLGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSG 324 (1153)
T ss_pred cchhhcccccccccchhHHHHHHHHHHHhCCCCccc---CCHHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCccCCCC
Confidence 10 00 01123455666666554433221 11256778899999999999999999999999888888999
Q ss_pred CEEEEeccchhhhhhcCCCeeEEcCCCCHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhcCCcHHHHHHHHHhcCCCH
Q 009306 321 SRIIITTRDRQVLANCGVDEVYQMEELVHDDALRLFSRHAFGGDHPHESHTELACKTIKYARGVPLALEVLGRYLYGKRR 400 (538)
Q Consensus 321 ~~iiiTtR~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~L~~~~~ 400 (538)
++||||||+..++...+...+|+++.|+.++|++||++++|+...+++...+++.+++++|+|+||||+++|++|++++.
T Consensus 325 srIIiTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~ 404 (1153)
T PLN03210 325 SRIIVITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDK 404 (1153)
T ss_pred cEEEEEeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCH
Confidence 99999999999988777788999999999999999999999887777778999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCcHHHHHHHhHhCCCH-HhHHHhhccccccCCCCHHHHHHHHHhCCCChHHHHHHHhhCCceeEe
Q 009306 401 EVWENAKSKWETAPPKGIQDALKISYDGLDD-KEQNIFLDIACFFIDEDRDTATKFLDDCEFFATSAIEVLVDKHLITIS 479 (538)
Q Consensus 401 ~~~~~~l~~l~~~~~~~v~~~l~~s~~~L~~-~~k~~l~~la~f~~~~~~~~l~~l~~~~~~~~~~~l~~L~~~~Li~~~ 479 (538)
.+|+..++.+....+..+..+|+.||+.|++ .+|.+|+++|||+.+.+.+.+..++..++.....+++.|++++||+..
T Consensus 405 ~~W~~~l~~L~~~~~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~~v~~~l~~~~~~~~~~l~~L~~ksLi~~~ 484 (1153)
T PLN03210 405 EDWMDMLPRLRNGLDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVNDIKLLLANSDLDVNIGLKNLVDKSLIHVR 484 (1153)
T ss_pred HHHHHHHHHHHhCccHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHHHHHHHHHhcCCCchhChHHHHhcCCEEEc
Confidence 9999999999988888999999999999976 599999999999999999999999988888888899999999999987
Q ss_pred cCCcEEecHHHHHHHHHHHhhcCCCCCCCcccccCcchHHHHHccCCCcchhhh
Q 009306 480 VLNKIEMHYLLRAMGREIVRQESTNDPGKRSRLWHHKEVYKILSENRVSNNDFS 533 (538)
Q Consensus 480 ~~~~~~~H~lv~~~~~~~~~~~~~~~~~~r~rl~~~~~i~~~l~~~~~~~~~~~ 533 (538)
.+++.||+++|+||++++++++ .+|++|+|+|++.+|+++|++++||++++.
T Consensus 485 -~~~~~MHdLl~~~~r~i~~~~~-~~~~~r~~l~~~~di~~vl~~~~g~~~v~~ 536 (1153)
T PLN03210 485 -EDIVEMHSLLQEMGKEIVRAQS-NEPGEREFLVDAKDICDVLEDNTGTKKVLG 536 (1153)
T ss_pred -CCeEEhhhHHHHHHHHHHHhhc-CCCCcceeEeCHHHHHHHHHhCcccceeeE
Confidence 6889999999999999999987 689999999999999999999999988764
No 2
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=1.5e-39 Score=354.84 Aligned_cols=303 Identities=27% Similarity=0.358 Sum_probs=265.3
Q ss_pred eeccchhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHh---hccceeeEEEEeehhhhhhcCChHHHHHHHHHH
Q 009306 191 VGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNK---ISRHFSGSYFARNVREAEETCRLGDLRQQLLST 267 (538)
Q Consensus 191 vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~---~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 267 (538)
||.+..++++...|..++. .+++|+||||+||||||+++++. ...+|+.++|+. +++......++.+++..
T Consensus 161 VG~e~~~~kl~~~L~~d~~--~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~----VSk~f~~~~iq~~Il~~ 234 (889)
T KOG4658|consen 161 VGLETMLEKLWNRLMEDDV--GIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVV----VSKEFTTRKIQQTILER 234 (889)
T ss_pred ccHHHHHHHHHHHhccCCC--CEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEE----EcccccHHhHHHHHHHH
Confidence 9999999999999986544 88999999999999999999995 457899999999 66778899999999998
Q ss_pred HhcCCCCC--CchhhcHHHHHHHhcCCCeEEEEecCCChHHHHHHhcCcCCCCCCCEEEEeccchhhhhh-cCCCeeEEc
Q 009306 268 LLNDGNVK--NFLNTDLNFQSRRLTRKKVLIVFDDVDHPRQIKILVGRLDLFASGSRIIITTRDRQVLAN-CGVDEVYQM 344 (538)
Q Consensus 268 l~~~~~~~--~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~~~~iiiTtR~~~~~~~-~~~~~~~~l 344 (538)
++...... ...++....+.+.|.++|++|||||||+..+|+.+...++....|++|++|||+..+... ++....+++
T Consensus 235 l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v 314 (889)
T KOG4658|consen 235 LGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEV 314 (889)
T ss_pred hccCCcccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccc
Confidence 87754433 334678888999999999999999999999999999888877789999999999999888 677789999
Q ss_pred CCCCHHHHHHHHHhhhcCCC-CCCCchHHHHHHHHHHhcCCcHHHHHHHHHhcCC-CHHHHHHHHHHhhcC-------CC
Q 009306 345 EELVHDDALRLFSRHAFGGD-HPHESHTELACKTIKYARGVPLALEVLGRYLYGK-RREVWENAKSKWETA-------PP 415 (538)
Q Consensus 345 ~~L~~~ea~~Lf~~~~~~~~-~~~~~~~~~~~~i~~~~~G~PLal~~~~~~L~~~-~~~~~~~~l~~l~~~-------~~ 415 (538)
+.|+.+|||.||++.++... ...+..++++++++++|+|+|||++++|+.|+.+ +..+|+.+.+.+... ..
T Consensus 315 ~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~ 394 (889)
T KOG4658|consen 315 ECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGME 394 (889)
T ss_pred cccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchh
Confidence 99999999999999997763 3334479999999999999999999999999885 466899999987654 13
Q ss_pred CcHHHHHHHhHhCCCHHhHHHhhccccccCC--CCHHHHHHHHHhCCCC------------hHHHHHHHhhCCceeEecC
Q 009306 416 KGIQDALKISYDGLDDKEQNIFLDIACFFID--EDRDTATKFLDDCEFF------------ATSAIEVLVDKHLITISVL 481 (538)
Q Consensus 416 ~~v~~~l~~s~~~L~~~~k~~l~~la~f~~~--~~~~~l~~l~~~~~~~------------~~~~l~~L~~~~Li~~~~~ 481 (538)
+.+..+|..||+.|+++.|.||+|||.||++ ++.+.+..+|.++|+. +..++..|++++|+.....
T Consensus 395 ~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~ 474 (889)
T KOG4658|consen 395 ESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERD 474 (889)
T ss_pred hhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhccc
Confidence 5788999999999998899999999999998 5789999999998843 4568999999999997642
Q ss_pred ----CcEEecHHHHHHHHHHHh
Q 009306 482 ----NKIEMHYLLRAMGREIVR 499 (538)
Q Consensus 482 ----~~~~~H~lv~~~~~~~~~ 499 (538)
..+.|||++|+||..+++
T Consensus 475 ~~~~~~~kmHDvvRe~al~ias 496 (889)
T KOG4658|consen 475 EGRKETVKMHDVVREMALWIAS 496 (889)
T ss_pred ccceeEEEeeHHHHHHHHHHhc
Confidence 469999999999999998
No 3
>PLN03194 putative disease resistance protein; Provisional
Probab=100.00 E-value=2.1e-39 Score=281.78 Aligned_cols=160 Identities=29% Similarity=0.500 Sum_probs=143.8
Q ss_pred CCCCCCCCCCcccEEEcCcccccccchHHHHHHHHhhCCCeeEeeC-CCCCCCcchHHHHHHHHhcceEEEEeccCcccc
Q 009306 7 PYASLTNPEIKYDVFLSFGGEDTRESFTSHLYSALSRETVETFIDD-DLRRGDEISQSLLDAIEASSISIIIFSESYASS 85 (538)
Q Consensus 7 ~~~~~~~~~~~~dvFiSy~~~D~~~~~~~~l~~~l~~~g~~~~~d~-~~~~g~~~~~~i~~~i~~s~~~i~v~S~~y~~s 85 (538)
.+++|++..++|||||||+|+|+|++|++||+.+|+++||+||+|+ ++++|+.|.+.|.+||++|++.|+||||+|++|
T Consensus 16 ~~~~~~~~~~~yDVFISFrG~DtR~~FvshL~~aL~~~GI~vF~D~~el~~G~~i~~~L~~AIeeSri~IvVfS~~Ya~S 95 (187)
T PLN03194 16 HYPSSSSSAKPCDVFINHRGIDTKRTIATLLYDHLSRLNLRPFLDNKNMKPGDKLFDKINSAIRNCKVGVAVFSPRYCES 95 (187)
T ss_pred ccccCCCCCCCCcEEEeCCCccccccHHHHHHHHHHHCCCEEEEcCccccCCCcHHHHHHHHHHhCeEEEEEECCCcccc
Confidence 5667777889999999999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHhhcCCeEEEEEEeecCCccccc-CCchHHHHHHHHhhChhhHHHHHHHhhhhccccCcccCC-CCh
Q 009306 86 RWCLDELLKILECKKEYAQIVVPVFYRVDPSHVRKQ-TGNFGDSFLKLEERFPDKMQSWRNALTEAADLSGFDSLV-VSP 163 (538)
Q Consensus 86 ~~c~~El~~~~~~~~~~~~~v~pv~~~v~~~~v~~~-~~~~~~~~~~~~~~~~~~~~~w~~al~~~~~~~g~~~~~-~~~ 163 (538)
.||++||.+|+++. .+|+||||+|+|++||+| .|. ...+++++|+.||++++++.|+++.. ...
T Consensus 96 ~WCLdEL~~I~e~~----~~ViPIFY~VdPsdVr~q~~~~----------~~~e~v~~Wr~AL~~va~l~G~~~~~~~~~ 161 (187)
T PLN03194 96 YFCLHELALIMESK----KRVIPIFCDVKPSQLRVVDNGT----------CPDEEIRRFNWALEEAKYTVGLTFDSLKGN 161 (187)
T ss_pred hhHHHHHHHHHHcC----CEEEEEEecCCHHHhhccccCC----------CCHHHHHHHHHHHHHHhccccccCCCCCCC
Confidence 99999999999864 479999999999999997 443 13467999999999999999987643 233
Q ss_pred hhHHHHHHHHhhhcccc
Q 009306 164 ESALIEEIVNAILKRLD 180 (538)
Q Consensus 164 e~~~i~~i~~~~~~~~~ 180 (538)
|++++++|+..+.+.+.
T Consensus 162 e~e~i~~iv~~v~k~l~ 178 (187)
T PLN03194 162 WSEVVTMASDAVIKNLI 178 (187)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999887754
No 4
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=5.1e-37 Score=302.45 Aligned_cols=266 Identities=29% Similarity=0.433 Sum_probs=210.8
Q ss_pred ccchhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHh--hccceeeEEEEeehhhhhhcCChHHHHHHHHHHHhc
Q 009306 193 VRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNK--ISRHFSGSYFARNVREAEETCRLGDLRQQLLSTLLN 270 (538)
Q Consensus 193 R~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~--~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~ 270 (538)
||.++++|.+.|....++.++|+|+||||+||||||.+++++ ...+|+.++|+.. ........++..++..+..
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~----~~~~~~~~~~~~i~~~l~~ 76 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSL----SKNPSLEQLLEQILRQLGE 76 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEE----ES-SCCHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeeccccccccccccccccccc----ccccccccccccccccccc
Confidence 788999999999876678999999999999999999999998 8889999999883 3344557888888888877
Q ss_pred CCC---CCCchhhcHHHHHHHhcCCCeEEEEecCCChHHHHHHhcCcCCCCCCCEEEEeccchhhhhhcCC-CeeEEcCC
Q 009306 271 DGN---VKNFLNTDLNFQSRRLTRKKVLIVFDDVDHPRQIKILVGRLDLFASGSRIIITTRDRQVLANCGV-DEVYQMEE 346 (538)
Q Consensus 271 ~~~---~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~~~~iiiTtR~~~~~~~~~~-~~~~~l~~ 346 (538)
... ...+.......+.+.+.++++|||||||++...++.+...+.....+++||||||+..+...... ...++|++
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~ 156 (287)
T PF00931_consen 77 PDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEP 156 (287)
T ss_dssp C-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS
T ss_pred cccccccccccccccccchhhhccccceeeeeeecccccccccccccccccccccccccccccccccccccccccccccc
Confidence 632 23667778899999999999999999999999888887766666679999999999988766543 57899999
Q ss_pred CCHHHHHHHHHhhhcCCC-CCCCchHHHHHHHHHHhcCCcHHHHHHHHHhcC-CCHHHHHHHHHHhhcCC------CCcH
Q 009306 347 LVHDDALRLFSRHAFGGD-HPHESHTELACKTIKYARGVPLALEVLGRYLYG-KRREVWENAKSKWETAP------PKGI 418 (538)
Q Consensus 347 L~~~ea~~Lf~~~~~~~~-~~~~~~~~~~~~i~~~~~G~PLal~~~~~~L~~-~~~~~~~~~l~~l~~~~------~~~v 418 (538)
|+.+|+++||.+.++... .......+.+.+|++.|+|+||||+++|++|+. .+..+|+..++.+.... ...+
T Consensus 157 L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~ 236 (287)
T PF00931_consen 157 LSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSV 236 (287)
T ss_dssp --HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999986554 233455678899999999999999999999954 25678888888765543 3668
Q ss_pred HHHHHHhHhCCCHHhHHHhhccccccCC--CCHHHHHHHHHhCCCC
Q 009306 419 QDALKISYDGLDDKEQNIFLDIACFFID--EDRDTATKFLDDCEFF 462 (538)
Q Consensus 419 ~~~l~~s~~~L~~~~k~~l~~la~f~~~--~~~~~l~~l~~~~~~~ 462 (538)
..++..||+.|+++.|.||++||+||.+ ++.+.+..+|.++++.
T Consensus 237 ~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i 282 (287)
T PF00931_consen 237 FSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFI 282 (287)
T ss_dssp HHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHT
T ss_pred cccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCC
Confidence 9999999999999999999999999987 5699999999887654
No 5
>smart00255 TIR Toll - interleukin 1 - resistance.
Probab=99.84 E-value=1.8e-20 Score=163.65 Aligned_cols=134 Identities=42% Similarity=0.679 Sum_probs=113.1
Q ss_pred cccEEEcCcc-cccccchHHHHHHHHhhCCCeeEeeCCCCCCCcchHHHHHHHHhcceEEEEeccCcccchhhHHHHHHH
Q 009306 17 KYDVFLSFGG-EDTRESFTSHLYSALSRETVETFIDDDLRRGDEISQSLLDAIEASSISIIIFSESYASSRWCLDELLKI 95 (538)
Q Consensus 17 ~~dvFiSy~~-~D~~~~~~~~l~~~l~~~g~~~~~d~~~~~g~~~~~~i~~~i~~s~~~i~v~S~~y~~s~~c~~El~~~ 95 (538)
+|||||||++ .+....|+.+|...|...|+.+|.|+....|. ...+|.++|++|+++|+|+||+|+.|.||..|+..+
T Consensus 1 ~~dvFISys~~~~~~~~~v~~L~~~l~~~~~~v~~d~~~~~~~-~~~~i~~~i~~s~~~i~vlS~~~~~S~w~~~E~~~a 79 (140)
T smart00255 1 EYDVFISYSGKEDVRNEFLSHLLEKLRGYGLCVFIDDFEPGGG-DLEEIDEAIEKSRIAIVVLSPNYAESEWCLDELVAA 79 (140)
T ss_pred CCeEEEECCCCHHHHHHHHHHHHHHhhcCCcEEEecCcccccc-hHHHHHHHHHHCcEEEEEECcccccChhHHHHHHHH
Confidence 5999999999 44457899999999999999999987443333 334999999999999999999999999999999999
Q ss_pred HHHHhh-cCCeEEEEEEeecCCcccccCCchHHHHHHHHhhChhhH--HHHHHHhhhhc
Q 009306 96 LECKKE-YAQIVVPVFYRVDPSHVRKQTGNFGDSFLKLEERFPDKM--QSWRNALTEAA 151 (538)
Q Consensus 96 ~~~~~~-~~~~v~pv~~~v~~~~v~~~~~~~~~~~~~~~~~~~~~~--~~w~~al~~~~ 151 (538)
+++... ...+||||+++..|..+..+.+.+...+..+..++++.. ..|++++..+.
T Consensus 80 ~~~~~~~~~~~iIPI~~~~~~~~~~~~~~~l~~~~~~~~~~w~~~~~~~fW~~~~~~l~ 138 (140)
T smart00255 80 LENALEEGGLRVIPIFYEVIPSDVRKQPGKFRKVLKKNYLKWPEDEKERFWKKALYAVP 138 (140)
T ss_pred HHHHHHcCCCeEEEEEEecChHHHHhcccHHHHHHHHHHhhcCCchhHHHHHHHHHHhc
Confidence 988754 567999999998888899999999999888756666655 48988877654
No 6
>PF01582 TIR: TIR domain; InterPro: IPR000157 In Drosophila melanogaster the Toll protein is involved in establishment of dorso-ventral polarity in the embryo. In addition, members of the Toll family play a key role in innate antibacterial and antifungal immunity in insects as well as in mammals. These proteins are type-I transmembrane receptors that share an intracellular 200 residue domain with the interleukin-1 receptor (IL-1R), the Toll/IL-1R homologous region (TIR). The similarity between Toll-like receptors (LTRs) and IL-1R is not restricted to sequence homology since these proteins also share a similar signalling pathway. They both induce the activation of a Rel type transcription factor via an adaptor protein and a protein kinase []. Interestingly, MyD88, a cytoplasmic adaptor protein found in mammals, contains a TIR domain associated to a DEATH domain (see IPR000488 from INTERPRO) [, , ]. Besides the mammalian and Drosophila melanogaster proteins, a TIR domain is also found in a number of plant proteins implicated in host defence []. As MyD88, these proteins are cytoplasmic. Site directed mutagenesis and deletion analysis have shown that the TIR domain is essential for Toll and IL-1R activities. Sequence analysis have revealed the presence of three highly conserved regions among the different members of the family: box 1 (FDAFISY), box 2 (GYKLC-RD-PG), and box 3 (a conserved W surrounded by basic residues). It has been proposed that boxes 1 and 2 are involved in the binding of proteins involved in signalling, whereas box 3 is primarily involved in directing localization of receptor, perhaps through interactions with cytoskeletal elements [].; GO: 0005515 protein binding, 0007165 signal transduction, 0005622 intracellular; PDB: 3J0A_A 2J67_B 3JRN_A 1FYV_A 1O77_D 1FYX_A 1FYW_A 3OZI_B 1T3G_B 2JS7_A ....
Probab=99.83 E-value=1.6e-21 Score=170.09 Aligned_cols=129 Identities=37% Similarity=0.605 Sum_probs=109.3
Q ss_pred EEEcCcccccccchHHHHHHHHhhC--CCeeEeeC-CCCCCCcchHHHHHHHHhcceEEEEeccCcccchhhHHHHHHHH
Q 009306 20 VFLSFGGEDTRESFTSHLYSALSRE--TVETFIDD-DLRRGDEISQSLLDAIEASSISIIIFSESYASSRWCLDELLKIL 96 (538)
Q Consensus 20 vFiSy~~~D~~~~~~~~l~~~l~~~--g~~~~~d~-~~~~g~~~~~~i~~~i~~s~~~i~v~S~~y~~s~~c~~El~~~~ 96 (538)
|||||++.|.+.+|+.+|...|++. |+++|+++ |+.+|..+.++|.++|++|+++|+|+|++|+.|.||+.|+..|+
T Consensus 1 vfisy~~~~d~~~~~~~L~~~Le~~~~g~~~c~~~rD~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~s~wc~~el~~a~ 80 (141)
T PF01582_consen 1 VFISYSGKDDREWFVSHLLPELEERPYGYKLCLDERDFLPGESILDNIQEAIERSRRTIVVLSRNYLSSEWCLFELQEAL 80 (141)
T ss_dssp EEEEE-GHHGHHHHHHCHHHHHHCTSSTS-EEEHHHCTSSSSCHHHHHHHHHHTEEEEEEEESHHHHHHTHHHHHHHHHH
T ss_pred cEEEeCCCCcHHHHHHHHHHHHHhCCCCeEEEEechhhcccccccchhhHhhhhceeeEEEeecccccccchhhhhhhhh
Confidence 7999999444679999999999999 99999998 99999999999999999999999999999999999999999999
Q ss_pred HHHhhcC--CeEEEEEEeecCCccc-ccCCchHHHHHHHHhhCh-----hhHHHHHHHhh
Q 009306 97 ECKKEYA--QIVVPVFYRVDPSHVR-KQTGNFGDSFLKLEERFP-----DKMQSWRNALT 148 (538)
Q Consensus 97 ~~~~~~~--~~v~pv~~~v~~~~v~-~~~~~~~~~~~~~~~~~~-----~~~~~w~~al~ 148 (538)
++....+ ..|+|||+++.+++++ .+.+.+...+........ .....|++++.
T Consensus 81 ~~~~~~~~~~~Il~v~~~v~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~fW~~l~~ 140 (141)
T PF01582_consen 81 ERLLEEGRDKLILPVFYDVSPSDVRPDQSLRFLLRFLTYLRWPDDDSREDRSWFWKKLRY 140 (141)
T ss_dssp HHHHCSTCTTEEEEESSSS-CHHCHTHHHHHHHHHCTHCEETSSSGGGGGHHHHHHHHHH
T ss_pred hhccccccccceeeEeccCChhhcChhhhHHHHHHhhhheeCCCCCCccHHHHHHHHHhc
Confidence 9986654 7899999999999999 688888777766443332 23677887754
No 7
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.76 E-value=1.4e-16 Score=181.78 Aligned_cols=315 Identities=13% Similarity=0.091 Sum_probs=199.7
Q ss_pred CCCCCCCceeccchhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhhcCChHHHHH
Q 009306 183 FHSENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEETCRLGDLRQ 262 (538)
Q Consensus 183 ~~~~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~ 262 (538)
+|..+..+|-|..-++.|.. ....+++.|+|++|.||||++..+..... .+.|+..-. .......+..
T Consensus 9 ~p~~~~~~~~R~rl~~~l~~-----~~~~~~~~v~apaG~GKTtl~~~~~~~~~----~~~w~~l~~---~d~~~~~f~~ 76 (903)
T PRK04841 9 RPVRLHNTVVRERLLAKLSG-----ANNYRLVLVTSPAGYGKTTLISQWAAGKN----NLGWYSLDE---SDNQPERFAS 76 (903)
T ss_pred CCCCccccCcchHHHHHHhc-----ccCCCeEEEECCCCCCHHHHHHHHHHhCC----CeEEEecCc---ccCCHHHHHH
Confidence 45566788988876665543 23578899999999999999999886432 577886321 2234444555
Q ss_pred HHHHHHhcCCCCC-------------CchhhcHHHHHHHhc--CCCeEEEEecCCCh---HHHHHHhcCcCCCCCCCEEE
Q 009306 263 QLLSTLLNDGNVK-------------NFLNTDLNFQSRRLT--RKKVLIVFDDVDHP---RQIKILVGRLDLFASGSRII 324 (538)
Q Consensus 263 ~l~~~l~~~~~~~-------------~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~---~~~~~l~~~l~~~~~~~~ii 324 (538)
.++..+....... .........+...+. +.+++|||||++.. ...+.+...+....++.++|
T Consensus 77 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv 156 (903)
T PRK04841 77 YLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLV 156 (903)
T ss_pred HHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEE
Confidence 5555553211110 111122222333332 68999999999542 22223322233335678899
Q ss_pred Eeccchhhhh--hc-CCCeeEEcC----CCCHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhcCCcHHHHHHHHHhcC
Q 009306 325 ITTRDRQVLA--NC-GVDEVYQME----ELVHDDALRLFSRHAFGGDHPHESHTELACKTIKYARGVPLALEVLGRYLYG 397 (538)
Q Consensus 325 iTtR~~~~~~--~~-~~~~~~~l~----~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~L~~ 397 (538)
||||...-+. .+ ......++. +|+.+|+.+||.... + .....+.+.++++.|+|+|+++..++..+..
T Consensus 157 ~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~--~---~~~~~~~~~~l~~~t~Gwp~~l~l~~~~~~~ 231 (903)
T PRK04841 157 VLSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRL--S---SPIEAAESSRLCDDVEGWATALQLIALSARQ 231 (903)
T ss_pred EEeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhcc--C---CCCCHHHHHHHHHHhCChHHHHHHHHHHHhh
Confidence 9999842211 11 112345565 999999999998765 1 1234567889999999999999999987754
Q ss_pred CCHHHHHHHHHHhhcCCCCcHHHHHHHh-HhCCCHHhHHHhhccccccCCCCHHHHHHHHHhCCCChHHHHHHHhhCCce
Q 009306 398 KRREVWENAKSKWETAPPKGIQDALKIS-YDGLDDKEQNIFLDIACFFIDEDRDTATKFLDDCEFFATSAIEVLVDKHLI 476 (538)
Q Consensus 398 ~~~~~~~~~l~~l~~~~~~~v~~~l~~s-~~~L~~~~k~~l~~la~f~~~~~~~~l~~l~~~~~~~~~~~l~~L~~~~Li 476 (538)
.+.. .......+....+..+...+... ++.|+++.+.++..+|+++ .++.+.+..+.+. ......++.|.+.+|+
T Consensus 232 ~~~~-~~~~~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~-~~~~~l~~~l~~~--~~~~~~L~~l~~~~l~ 307 (903)
T PRK04841 232 NNSS-LHDSARRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR-SMNDALIVRVTGE--ENGQMRLEELERQGLF 307 (903)
T ss_pred CCCc-hhhhhHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc-cCCHHHHHHHcCC--CcHHHHHHHHHHCCCe
Confidence 3210 11111222222344577765544 8999999999999999985 7787777777642 3457789999999996
Q ss_pred eE-ec--CCcEEecHHHHHHHHHHHhhcCCCCCCCcccccCcchHHHHHc
Q 009306 477 TI-SV--LNKIEMHYLLRAMGREIVRQESTNDPGKRSRLWHHKEVYKILS 523 (538)
Q Consensus 477 ~~-~~--~~~~~~H~lv~~~~~~~~~~~~~~~~~~r~rl~~~~~i~~~l~ 523 (538)
.. .+ ...|++|++++++.+..+..+ .+..+.++ |......+.
T Consensus 308 ~~~~~~~~~~yr~H~L~r~~l~~~l~~~---~~~~~~~l--h~raa~~~~ 352 (903)
T PRK04841 308 IQRMDDSGEWFRYHPLFASFLRHRCQWE---LAQELPEL--HRAAAEAWL 352 (903)
T ss_pred eEeecCCCCEEehhHHHHHHHHHHHHhc---CchHHHHH--HHHHHHHHH
Confidence 63 22 236999999999999998554 24445555 444444333
No 8
>PF13676 TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_A 3UB2_A.
Probab=99.66 E-value=3.4e-17 Score=134.44 Aligned_cols=87 Identities=30% Similarity=0.549 Sum_probs=75.8
Q ss_pred EEEcCcccccccchHHHHHHHHhhCCCeeEeeCCCCCCCcchHHHHHHHHhcceEEEEeccCcccchhhHHHHHHHHHHH
Q 009306 20 VFLSFGGEDTRESFTSHLYSALSRETVETFIDDDLRRGDEISQSLLDAIEASSISIIIFSESYASSRWCLDELLKILECK 99 (538)
Q Consensus 20 vFiSy~~~D~~~~~~~~l~~~l~~~g~~~~~d~~~~~g~~~~~~i~~~i~~s~~~i~v~S~~y~~s~~c~~El~~~~~~~ 99 (538)
|||||+++| +.++.+|...|+..|+++|+|.++.+|+.+.+.|.++|++|+.+|+++|++|+.|+||..|+..+.+
T Consensus 1 VFIS~~~~D--~~~a~~l~~~L~~~g~~v~~d~~~~~g~~~~~~i~~~i~~s~~~i~~~S~~~~~s~~~~~E~~~a~~-- 76 (102)
T PF13676_consen 1 VFISYSSED--REFAERLAERLESAGIRVFLDRDIPPGEDWREEIERAIERSDCVIVLLSPNYLKSPWCRFELGAAWK-- 76 (102)
T ss_dssp EEEEEEGGG--CCCHHHHHHHHHHTT--EE-GGEE-TTS-HHCCCHHCCTTEEEEEEEEEHHHHCTHHHHHHHHHHHC--
T ss_pred eEEEecCCc--HHHHHHHHHHHhhcCCEEEEEEeCCCCCCHHHHHHHHHHhCCEEEEEECcccccChHHHHHHHHHHH--
Confidence 899999999 7799999999999999999999999999999999999999999999999999999999999998832
Q ss_pred hhcCCeEEEEEEe
Q 009306 100 KEYAQIVVPVFYR 112 (538)
Q Consensus 100 ~~~~~~v~pv~~~ 112 (538)
.+.+|+||.++
T Consensus 77 --~~~~iipv~~~ 87 (102)
T PF13676_consen 77 --RGKPIIPVRLD 87 (102)
T ss_dssp --TSESEEEEECS
T ss_pred --CCCEEEEEEEC
Confidence 44579999954
No 9
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.61 E-value=3.2e-14 Score=149.25 Aligned_cols=296 Identities=14% Similarity=0.142 Sum_probs=198.2
Q ss_pred CCCCCCCceeccchhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhhcCChHHHHH
Q 009306 183 FHSENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEETCRLGDLRQ 262 (538)
Q Consensus 183 ~~~~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~ 262 (538)
+|..+.+.|-|..-++.|... .+.+++.|..|+|.|||||+.+++. ....-..+.|+..... ...+..+..
T Consensus 14 ~P~~~~~~v~R~rL~~~L~~~-----~~~RL~li~APAGfGKttl~aq~~~-~~~~~~~v~Wlslde~---dndp~rF~~ 84 (894)
T COG2909 14 RPVRPDNYVVRPRLLDRLRRA-----NDYRLILISAPAGFGKTTLLAQWRE-LAADGAAVAWLSLDES---DNDPARFLS 84 (894)
T ss_pred CCCCcccccccHHHHHHHhcC-----CCceEEEEeCCCCCcHHHHHHHHHH-hcCcccceeEeecCCc---cCCHHHHHH
Confidence 445567788887655554442 3688999999999999999999998 4445567888874332 455666667
Q ss_pred HHHHHHhcCCCCC-------------CchhhcHHHHHHHhc--CCCeEEEEecCC---Ch---HHHHHHhcCcCCCCCCC
Q 009306 263 QLLSTLLNDGNVK-------------NFLNTDLNFQSRRLT--RKKVLIVFDDVD---HP---RQIKILVGRLDLFASGS 321 (538)
Q Consensus 263 ~l~~~l~~~~~~~-------------~~~~~~~~~l~~~l~--~k~~LlVlDdv~---~~---~~~~~l~~~l~~~~~~~ 321 (538)
.++..+....+.. .++......+..-+. .+|+.+||||.. ++ +.++.++... +++.
T Consensus 85 yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~---P~~l 161 (894)
T COG2909 85 YLIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHA---PENL 161 (894)
T ss_pred HHHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhC---CCCe
Confidence 7766665332211 222223333333332 478999999984 22 3456665554 5789
Q ss_pred EEEEeccchhhhhhc--C-CCeeEEc----CCCCHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhcCCcHHHHHHHHH
Q 009306 322 RIIITTRDRQVLANC--G-VDEVYQM----EELVHDDALRLFSRHAFGGDHPHESHTELACKTIKYARGVPLALEVLGRY 394 (538)
Q Consensus 322 ~iiiTtR~~~~~~~~--~-~~~~~~l----~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~ 394 (538)
.+|+|||...-+... . .+...++ -.|+.+|+.++|..+. ..+.+...++.+.+.++|++-||.+.+=.
T Consensus 162 ~lvv~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~-----~l~Ld~~~~~~L~~~teGW~~al~L~aLa 236 (894)
T COG2909 162 TLVVTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRG-----SLPLDAADLKALYDRTEGWAAALQLIALA 236 (894)
T ss_pred EEEEEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcC-----CCCCChHHHHHHHhhcccHHHHHHHHHHH
Confidence 999999987332111 1 1223333 3489999999998775 12344667889999999999999999988
Q ss_pred hcCC-CHHHHHHHHHHhhcCCCCcHHHH-HHHhHhCCCHHhHHHhhccccccCCCCHHHHHHHHHhCCCChHHHHHHHhh
Q 009306 395 LYGK-RREVWENAKSKWETAPPKGIQDA-LKISYDGLDDKEQNIFLDIACFFIDEDRDTATKFLDDCEFFATSAIEVLVD 472 (538)
Q Consensus 395 L~~~-~~~~~~~~l~~l~~~~~~~v~~~-l~~s~~~L~~~~k~~l~~la~f~~~~~~~~l~~l~~~~~~~~~~~l~~L~~ 472 (538)
++++ +.+. ....+... ...+.+. .+..++.||++.+.+++.+|++ ..++.+....+.+. ......|+.|.+
T Consensus 237 ~~~~~~~~q---~~~~LsG~-~~~l~dYL~eeVld~Lp~~l~~FLl~~svl-~~f~~eL~~~Ltg~--~ng~amLe~L~~ 309 (894)
T COG2909 237 LRNNTSAEQ---SLRGLSGA-ASHLSDYLVEEVLDRLPPELRDFLLQTSVL-SRFNDELCNALTGE--ENGQAMLEELER 309 (894)
T ss_pred ccCCCcHHH---Hhhhccch-HHHHHHHHHHHHHhcCCHHHHHHHHHHHhH-HHhhHHHHHHHhcC--CcHHHHHHHHHh
Confidence 8743 3322 22222222 2334443 4556899999999999999998 44555555555533 235567999999
Q ss_pred CCceeE--e-cCCcEEecHHHHHHHHHHHhhcC
Q 009306 473 KHLITI--S-VLNKIEMHYLLRAMGREIVRQES 502 (538)
Q Consensus 473 ~~Li~~--~-~~~~~~~H~lv~~~~~~~~~~~~ 502 (538)
++|+-+ + +++.|++|+++.+|.+...+.+.
T Consensus 310 ~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~~~ 342 (894)
T COG2909 310 RGLFLQRLDDEGQWFRYHHLFAEFLRQRLQREL 342 (894)
T ss_pred CCCceeeecCCCceeehhHHHHHHHHhhhcccc
Confidence 998773 2 36679999999999999987753
No 10
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.57 E-value=7.7e-13 Score=136.30 Aligned_cols=284 Identities=14% Similarity=0.096 Sum_probs=171.0
Q ss_pred CCCCCceeccchhHHHHHhhhcC--CCCceEEEEeccCCCchhHHHHHHHHhhccce--eeEEEEeehhhhhhcCChHHH
Q 009306 185 SENEDLVGVRLPMKEIESLLRTG--STNVYKLGIWGIGGIGKTTIAGAIFNKISRHF--SGSYFARNVREAEETCRLGDL 260 (538)
Q Consensus 185 ~~~~~~vGR~~~l~~l~~~L~~~--~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f--~~~~~~~~~~~~~~~~~~~~l 260 (538)
..|+.|+||+.++++|...+... +.....+.|+|++|+|||++++.+++.+.... -..+++.+ ........+
T Consensus 27 ~~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~----~~~~~~~~~ 102 (394)
T PRK00411 27 YVPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINC----QIDRTRYAI 102 (394)
T ss_pred CcCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEEC----CcCCCHHHH
Confidence 46688999999999999988542 23445688999999999999999999876543 22344442 222345677
Q ss_pred HHHHHHHHhcCCCC--CCchhhcHHHHHHHhc--CCCeEEEEecCCChH------HHHHHhcCcCCCC-CCCEEEEeccc
Q 009306 261 RQQLLSTLLNDGNV--KNFLNTDLNFQSRRLT--RKKVLIVFDDVDHPR------QIKILVGRLDLFA-SGSRIIITTRD 329 (538)
Q Consensus 261 ~~~l~~~l~~~~~~--~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~------~~~~l~~~l~~~~-~~~~iiiTtR~ 329 (538)
+..++.++...... ..+..+....+.+.+. +++.+||||+++... .+..+........ .+..+|.++..
T Consensus 103 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~ 182 (394)
T PRK00411 103 FSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSD 182 (394)
T ss_pred HHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECC
Confidence 77787777652221 1344555566666654 456899999997643 3444433222111 12335655554
Q ss_pred hhhhhhc-------CCCeeEEcCCCCHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHh----cCCcHHHHHHHHHh---
Q 009306 330 RQVLANC-------GVDEVYQMEELVHDDALRLFSRHAFGGDHPHESHTELACKTIKYA----RGVPLALEVLGRYL--- 395 (538)
Q Consensus 330 ~~~~~~~-------~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~----~G~PLal~~~~~~L--- 395 (538)
..+...+ -....+.+++++.++..+++..++.....+.....+.++.+++.+ |..+.++.++-...
T Consensus 183 ~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a 262 (394)
T PRK00411 183 LTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIA 262 (394)
T ss_pred cchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 4322211 113467899999999999999886322112223344555555555 44667776664432
Q ss_pred --cCC---CHHHHHHHHHHhhcCCCCcHHHHHHHhHhCCCHHhHHHhhcccccc----CCCCHHHHHH----HHHhCCC-
Q 009306 396 --YGK---RREVWENAKSKWETAPPKGIQDALKISYDGLDDKEQNIFLDIACFF----IDEDRDTATK----FLDDCEF- 461 (538)
Q Consensus 396 --~~~---~~~~~~~~l~~l~~~~~~~v~~~l~~s~~~L~~~~k~~l~~la~f~----~~~~~~~l~~----l~~~~~~- 461 (538)
++. +.+....+.+.. -...+...+..|+..+|.+|..++... ..++...+.. ++..-+.
T Consensus 263 ~~~~~~~I~~~~v~~a~~~~-------~~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~~~ 335 (394)
T PRK00411 263 EREGSRKVTEEDVRKAYEKS-------EIVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELGYE 335 (394)
T ss_pred HHcCCCCcCHHHHHHHHHHH-------HHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcCCC
Confidence 111 234444444433 123355678999999999998877543 2344444432 2222222
Q ss_pred -----ChHHHHHHHhhCCceeEe
Q 009306 462 -----FATSAIEVLVDKHLITIS 479 (538)
Q Consensus 462 -----~~~~~l~~L~~~~Li~~~ 479 (538)
....+++.|.+.|||...
T Consensus 336 ~~~~~~~~~~l~~L~~~glI~~~ 358 (394)
T PRK00411 336 PRTHTRFYEYINKLDMLGIINTR 358 (394)
T ss_pred cCcHHHHHHHHHHHHhcCCeEEE
Confidence 234589999999999954
No 11
>COG3899 Predicted ATPase [General function prediction only]
Probab=99.54 E-value=1.4e-13 Score=152.06 Aligned_cols=326 Identities=16% Similarity=0.222 Sum_probs=197.2
Q ss_pred CceeccchhHHHHHhhhc-CCCCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEee----hhhhhhcCChHHHHHH
Q 009306 189 DLVGVRLPMKEIESLLRT-GSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARN----VREAEETCRLGDLRQQ 263 (538)
Q Consensus 189 ~~vGR~~~l~~l~~~L~~-~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~----~~~~~~~~~~~~l~~~ 263 (538)
.++||+.+++.|...+.. ..+...++.+.|.+|||||+|++++...+.+... .++.. .....+-..+...++.
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~--~~i~~~f~q~~~~ipl~~lvq~~r~ 78 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRG--YFIKGKFDQFERNIPLSPLVQAFRD 78 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccce--eeeHhhcccccCCCchHHHHHHHHH
Confidence 378999999999998875 3345679999999999999999999998766521 12110 0001111111112222
Q ss_pred H-------------------HHHHhcCCCCC----------------------Cchhhc-----HHHHHHHh-cCCCeEE
Q 009306 264 L-------------------LSTLLNDGNVK----------------------NFLNTD-----LNFQSRRL-TRKKVLI 296 (538)
Q Consensus 264 l-------------------~~~l~~~~~~~----------------------~~~~~~-----~~~l~~~l-~~k~~Ll 296 (538)
+ +..++...... ...+.. ...+.... +.+|.++
T Consensus 79 l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi 158 (849)
T COG3899 79 LMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVI 158 (849)
T ss_pred HHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEE
Confidence 2 22221110000 000000 11111222 4569999
Q ss_pred EEecC-CCh-HH---HHHHhcCcC--CC-CCCCEEEEeccch--hhhhhcCCCeeEEcCCCCHHHHHHHHHhhhcCCCCC
Q 009306 297 VFDDV-DHP-RQ---IKILVGRLD--LF-ASGSRIIITTRDR--QVLANCGVDEVYQMEELVHDDALRLFSRHAFGGDHP 366 (538)
Q Consensus 297 VlDdv-~~~-~~---~~~l~~~l~--~~-~~~~~iiiTtR~~--~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~ 366 (538)
|+||+ |-+ .. ++.++.... .+ ....-.+.|.+.. .+.........+.|.||+..+...+........
T Consensus 159 ~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~--- 235 (849)
T COG3899 159 VLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCT--- 235 (849)
T ss_pred EEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCc---
Confidence 99999 432 22 333333321 00 0011122222222 222222344789999999999999999887332
Q ss_pred CCchHHHHHHHHHHhcCCcHHHHHHHHHhcCC-------CHHHHHHHHHHhhcCC-CCcHHHHHHHhHhCCCHHhHHHhh
Q 009306 367 HESHTELACKTIKYARGVPLALEVLGRYLYGK-------RREVWENAKSKWETAP-PKGIQDALKISYDGLDDKEQNIFL 438 (538)
Q Consensus 367 ~~~~~~~~~~i~~~~~G~PLal~~~~~~L~~~-------~~~~~~~~l~~l~~~~-~~~v~~~l~~s~~~L~~~~k~~l~ 438 (538)
.....+....+++++.|+|++++.+-..+... +...|+.-...+.... .+.+...+...++.||...++++.
T Consensus 236 ~~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~~~~~~~vv~~l~~rl~kL~~~t~~Vl~ 315 (849)
T COG3899 236 KLLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGILATTDAVVEFLAARLQKLPGTTREVLK 315 (849)
T ss_pred ccccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCCchhhHHHHHHHHHHHhcCCHHHHHHHH
Confidence 23346778899999999999999999988653 2334544433332221 133555788999999999999999
Q ss_pred ccccccCCCCHHHHHHHHHhCCCChHHHHHHHhhCCceeEec--------CC---cEEecHHHHHHHHHHHhhcCCCCCC
Q 009306 439 DIACFFIDEDRDTATKFLDDCEFFATSAIEVLVDKHLITISV--------LN---KIEMHYLLRAMGREIVRQESTNDPG 507 (538)
Q Consensus 439 ~la~f~~~~~~~~l~~l~~~~~~~~~~~l~~L~~~~Li~~~~--------~~---~~~~H~lv~~~~~~~~~~~~~~~~~ 507 (538)
..||+++.++.+.+..++..........+......++|.... .. +-..|+++|+.+...+-+.
T Consensus 316 ~AA~iG~~F~l~~La~l~~~~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~vqqaaY~~i~~~------ 389 (849)
T COG3899 316 AAACIGNRFDLDTLAALAEDSPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDRVQQAAYNLIPES------ 389 (849)
T ss_pred HHHHhCccCCHHHHHHHHhhchHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHHHHHHHhccCchh------
Confidence 999999999999999998754333333444444555554321 11 1256888888877665433
Q ss_pred CcccccCcchHHHHHccCCC
Q 009306 508 KRSRLWHHKEVYKILSENRV 527 (538)
Q Consensus 508 ~r~rl~~~~~i~~~l~~~~~ 527 (538)
+|...|..|...|+.+..
T Consensus 390 --~rq~~H~~i~~lL~~~~~ 407 (849)
T COG3899 390 --QRQYLHLRIGQLLEQNIP 407 (849)
T ss_pred --hHHHHHHHHHHHHHHhCC
Confidence 344559999999988876
No 12
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.47 E-value=8.4e-13 Score=131.09 Aligned_cols=258 Identities=18% Similarity=0.191 Sum_probs=154.0
Q ss_pred CCceeccchhHHHHHhhhcC---CCCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhhcCChHHHHHHH
Q 009306 188 EDLVGVRLPMKEIESLLRTG---STNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEETCRLGDLRQQL 264 (538)
Q Consensus 188 ~~~vGR~~~l~~l~~~L~~~---~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l 264 (538)
..|+|++..++.|..++... ....+.+.|+|++|+|||+||+.+++.+...+. ... . ........+. ..
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~---~~~-~---~~~~~~~~l~-~~ 75 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVNLK---ITS-G---PALEKPGDLA-AI 75 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEE---Eec-c---chhcCchhHH-HH
Confidence 57999999999999888641 223456889999999999999999998764432 111 0 0001111111 11
Q ss_pred HHHHhcCCCCCCchhhcHHHHHHHhcCCCeEEEEecCCCh--HHHHHHhcCcC-------------------CCCCCCEE
Q 009306 265 LSTLLNDGNVKNFLNTDLNFQSRRLTRKKVLIVFDDVDHP--RQIKILVGRLD-------------------LFASGSRI 323 (538)
Q Consensus 265 ~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~l~-------------------~~~~~~~i 323 (538)
+..+ ....+|+|||++.. ...+.+...+. ...+.+-|
T Consensus 76 l~~~----------------------~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li 133 (305)
T TIGR00635 76 LTNL----------------------EEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLV 133 (305)
T ss_pred HHhc----------------------ccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEE
Confidence 1111 23346677776432 12222221110 01223344
Q ss_pred EEeccchhhhhhc--CCCeeEEcCCCCHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhcCCcHHHHHHHHHhcCCCHH
Q 009306 324 IITTRDRQVLANC--GVDEVYQMEELVHDDALRLFSRHAFGGDHPHESHTELACKTIKYARGVPLALEVLGRYLYGKRRE 401 (538)
Q Consensus 324 iiTtR~~~~~~~~--~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~L~~~~~~ 401 (538)
..||+...+...+ .....+.+++++.++..+++.+.+.. .......+.+..+++.|+|.|..+..++..+.
T Consensus 134 ~~t~~~~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~--~~~~~~~~al~~ia~~~~G~pR~~~~ll~~~~----- 206 (305)
T TIGR00635 134 GATTRAGMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGL--LNVEIEPEAALEIARRSRGTPRIANRLLRRVR----- 206 (305)
T ss_pred EecCCccccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHH--hCCCcCHHHHHHHHHHhCCCcchHHHHHHHHH-----
Confidence 5556654332221 12346789999999999999988732 22345577889999999999977765555431
Q ss_pred HHHHHH-HHhhcCCCCc---HHHHHHHhHhCCCHHhHHHhh-ccccccC-CCCHHHHHHHHHhCCCChHHHHH-HHhhCC
Q 009306 402 VWENAK-SKWETAPPKG---IQDALKISYDGLDDKEQNIFL-DIACFFI-DEDRDTATKFLDDCEFFATSAIE-VLVDKH 474 (538)
Q Consensus 402 ~~~~~l-~~l~~~~~~~---v~~~l~~s~~~L~~~~k~~l~-~la~f~~-~~~~~~l~~l~~~~~~~~~~~l~-~L~~~~ 474 (538)
.... ..-.....+. ....+...+..++..++..|. .+..+.. +++.+.+...++.+....+..++ .|++++
T Consensus 207 --~~a~~~~~~~it~~~v~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~~~~~~~ia~~lg~~~~~~~~~~e~~Li~~~ 284 (305)
T TIGR00635 207 --DFAQVRGQKIINRDIALKALEMLMIDELGLDEIDRKLLSVLIEQFQGGPVGLKTLAAALGEDADTIEDVYEPYLLQIG 284 (305)
T ss_pred --HHHHHcCCCCcCHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCCcccHHHHHHHhCCCcchHHHhhhHHHHHcC
Confidence 1000 0000011111 111244456788888888777 4455543 47889999999888888888899 699999
Q ss_pred ceeEecCCcE
Q 009306 475 LITISVLNKI 484 (538)
Q Consensus 475 Li~~~~~~~~ 484 (538)
||.....|++
T Consensus 285 li~~~~~g~~ 294 (305)
T TIGR00635 285 FLQRTPRGRI 294 (305)
T ss_pred CcccCCchhh
Confidence 9986655543
No 13
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.47 E-value=2.4e-11 Score=123.95 Aligned_cols=285 Identities=14% Similarity=0.100 Sum_probs=162.2
Q ss_pred CCCCCceeccchhHHHHHhhhc--CCCCceEEEEeccCCCchhHHHHHHHHhhcccee------eEEEEeehhhhhhcCC
Q 009306 185 SENEDLVGVRLPMKEIESLLRT--GSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFS------GSYFARNVREAEETCR 256 (538)
Q Consensus 185 ~~~~~~vGR~~~l~~l~~~L~~--~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~------~~~~~~~~~~~~~~~~ 256 (538)
..|+.++||+.++++|...|.. .+.....+.|+|++|+|||++++.+++.+..... ..+|+.+. ....
T Consensus 12 ~~p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~----~~~~ 87 (365)
T TIGR02928 12 YVPDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQ----ILDT 87 (365)
T ss_pred CCCCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECC----CCCC
Confidence 4567899999999999998874 2233456899999999999999999987643221 23444422 2234
Q ss_pred hHHHHHHHHHHHhc--CCCC--CCchhhcHHHHHHHh--cCCCeEEEEecCCChH-----HHHHHhcC--cCCC-CCCCE
Q 009306 257 LGDLRQQLLSTLLN--DGNV--KNFLNTDLNFQSRRL--TRKKVLIVFDDVDHPR-----QIKILVGR--LDLF-ASGSR 322 (538)
Q Consensus 257 ~~~l~~~l~~~l~~--~~~~--~~~~~~~~~~l~~~l--~~k~~LlVlDdv~~~~-----~~~~l~~~--l~~~-~~~~~ 322 (538)
...++..++.++.. .... ..+..+....+.+.+ .+++++||||+++... .+..+... .... +....
T Consensus 88 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~ 167 (365)
T TIGR02928 88 LYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVG 167 (365)
T ss_pred HHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEE
Confidence 55677777777642 1111 123334444455554 3567899999997651 12333322 1111 12334
Q ss_pred EEEeccchhhhhhcC-------CCeeEEcCCCCHHHHHHHHHhhhcC---CCCCCCchHHHHHHHHHHhcCCcHHH-HHH
Q 009306 323 IIITTRDRQVLANCG-------VDEVYQMEELVHDDALRLFSRHAFG---GDHPHESHTELACKTIKYARGVPLAL-EVL 391 (538)
Q Consensus 323 iiiTtR~~~~~~~~~-------~~~~~~l~~L~~~ea~~Lf~~~~~~---~~~~~~~~~~~~~~i~~~~~G~PLal-~~~ 391 (538)
+|.++........+. ....+.+++++.+|..+++..++.. .....+...+.+..++..+.|.|..+ ..+
T Consensus 168 lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l 247 (365)
T TIGR02928 168 VIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLL 247 (365)
T ss_pred EEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHH
Confidence 555554432221111 1246889999999999999988631 11122222234556677777888443 332
Q ss_pred HHHh----c-C---CCHHHHHHHHHHhhcCCCCcHHHHHHHhHhCCCHHhHHHhhcccccc----CCCCHHHHHH----H
Q 009306 392 GRYL----Y-G---KRREVWENAKSKWETAPPKGIQDALKISYDGLDDKEQNIFLDIACFF----IDEDRDTATK----F 455 (538)
Q Consensus 392 ~~~L----~-~---~~~~~~~~~l~~l~~~~~~~v~~~l~~s~~~L~~~~k~~l~~la~f~----~~~~~~~l~~----l 455 (538)
-... . + -+.+..+.+.+.+ -.......+..|+.+++.+|..++... ..+....+.. +
T Consensus 248 ~~a~~~a~~~~~~~it~~~v~~a~~~~-------~~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~~ 320 (365)
T TIGR02928 248 RVAGEIAEREGAERVTEDHVEKAQEKI-------EKDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYKEV 320 (365)
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHH-------HHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHH
Confidence 2221 1 1 1233333333333 123455678899999998887766322 1233333322 2
Q ss_pred HHhCCC------ChHHHHHHHhhCCceeEec
Q 009306 456 LDDCEF------FATSAIEVLVDKHLITISV 480 (538)
Q Consensus 456 ~~~~~~------~~~~~l~~L~~~~Li~~~~ 480 (538)
....+. ....+++.|...|||....
T Consensus 321 ~~~~~~~~~~~~~~~~~l~~l~~~gli~~~~ 351 (365)
T TIGR02928 321 CEDIGVDPLTQRRISDLLNELDMLGLVEAEE 351 (365)
T ss_pred HHhcCCCCCcHHHHHHHHHHHHhcCCeEEEE
Confidence 221121 1345799999999999653
No 14
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.46 E-value=5e-13 Score=133.68 Aligned_cols=262 Identities=17% Similarity=0.160 Sum_probs=158.6
Q ss_pred CCCCCCceeccchhHHHHHhhhc---CCCCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhhcCChHHH
Q 009306 184 HSENEDLVGVRLPMKEIESLLRT---GSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEETCRLGDL 260 (538)
Q Consensus 184 ~~~~~~~vGR~~~l~~l~~~L~~---~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l 260 (538)
|....+|+|++..++.+..++.. .....+.+.|+|++|+|||+||+.+++.+...+. +.. .. ..... ..
T Consensus 21 P~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~---~~~-~~---~~~~~-~~ 92 (328)
T PRK00080 21 PKSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVNIR---ITS-GP---ALEKP-GD 92 (328)
T ss_pred cCCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeE---EEe-cc---cccCh-HH
Confidence 34557899999999999887763 2234567899999999999999999998765432 111 00 00000 11
Q ss_pred HHHHHHHHhcCCCCCCchhhcHHHHHHHhcCCCeEEEEecCCChH--HHHHHhcCcC-------------------CCCC
Q 009306 261 RQQLLSTLLNDGNVKNFLNTDLNFQSRRLTRKKVLIVFDDVDHPR--QIKILVGRLD-------------------LFAS 319 (538)
Q Consensus 261 ~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~l~~~l~-------------------~~~~ 319 (538)
+..++.. + ....+|+||+++... ..+.+...+. ...+
T Consensus 93 l~~~l~~---------------------l-~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~ 150 (328)
T PRK00080 93 LAAILTN---------------------L-EEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPP 150 (328)
T ss_pred HHHHHHh---------------------c-ccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCCC
Confidence 1111111 1 234577777775321 1111111100 0012
Q ss_pred CCEEEEeccchhhhhhc--CCCeeEEcCCCCHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhcCCcHHHHHHHHHhcC
Q 009306 320 GSRIIITTRDRQVLANC--GVDEVYQMEELVHDDALRLFSRHAFGGDHPHESHTELACKTIKYARGVPLALEVLGRYLYG 397 (538)
Q Consensus 320 ~~~iiiTtR~~~~~~~~--~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~L~~ 397 (538)
.+-|..|++...+...+ .....+++++++.++..+++.+.+.. .......+.+..|++.|+|.|-.+..+...+
T Consensus 151 ~~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~--~~~~~~~~~~~~ia~~~~G~pR~a~~~l~~~-- 226 (328)
T PRK00080 151 FTLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARI--LGVEIDEEGALEIARRSRGTPRIANRLLRRV-- 226 (328)
T ss_pred ceEEeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHH--cCCCcCHHHHHHHHHHcCCCchHHHHHHHHH--
Confidence 33345555544332221 12346899999999999999988732 3334567789999999999997665555543
Q ss_pred CCHHHHHHHHHHhhcCCCC---cHHHHHHHhHhCCCHHhHHHhh-ccccccC-CCCHHHHHHHHHhCCCChHHHHH-HHh
Q 009306 398 KRREVWENAKSKWETAPPK---GIQDALKISYDGLDDKEQNIFL-DIACFFI-DEDRDTATKFLDDCEFFATSAIE-VLV 471 (538)
Q Consensus 398 ~~~~~~~~~l~~l~~~~~~---~v~~~l~~s~~~L~~~~k~~l~-~la~f~~-~~~~~~l~~l~~~~~~~~~~~l~-~L~ 471 (538)
..|.... .-...... .....+...+..|++..+..|. .+..|.. ++..+.+...++.+....+..++ .|+
T Consensus 227 ---~~~a~~~-~~~~I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~a~~lg~~~~~~~~~~e~~Li 302 (328)
T PRK00080 227 ---RDFAQVK-GDGVITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGGPVGLDTLAAALGEERDTIEDVYEPYLI 302 (328)
T ss_pred ---HHHHHHc-CCCCCCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCCceeHHHHHHHHCCCcchHHHHhhHHHH
Confidence 1111110 00011111 1223344566788888888886 5555544 57899999999888888888888 999
Q ss_pred hCCceeEecCCc
Q 009306 472 DKHLITISVLNK 483 (538)
Q Consensus 472 ~~~Li~~~~~~~ 483 (538)
+.+||.....|+
T Consensus 303 ~~~li~~~~~gr 314 (328)
T PRK00080 303 QQGFIQRTPRGR 314 (328)
T ss_pred HcCCcccCCchH
Confidence 999998665554
No 15
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.43 E-value=8.9e-13 Score=125.43 Aligned_cols=198 Identities=19% Similarity=0.202 Sum_probs=103.8
Q ss_pred ceeccchhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhhcCChHHH------HHH
Q 009306 190 LVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEETCRLGDL------RQQ 263 (538)
Q Consensus 190 ~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l------~~~ 263 (538)
|+||+.+++.|.+++..+ ..+.+.|+|+.|+|||+|++.+.+........++|+........ .....+ ...
T Consensus 1 F~gR~~el~~l~~~l~~~--~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~-~~~~~~~~~~~~~~~ 77 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG--PSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNE-SSLRSFIEETSLADE 77 (234)
T ss_dssp S-S-HHHHHHHHHCHHH----SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHH-HHHHHHHHHHHHHCH
T ss_pred CCCHHHHHHHHHHHHHhh--cCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhh-hHHHHHHHHHHHHHH
Confidence 799999999999999753 35679999999999999999999988554444555443222111 011111 111
Q ss_pred ----HHHHHhcCCC------CCCchhhcHHHHHHHhc--CCCeEEEEecCCChH--------HHHHHhcCcCC--CCCCC
Q 009306 264 ----LLSTLLNDGN------VKNFLNTDLNFQSRRLT--RKKVLIVFDDVDHPR--------QIKILVGRLDL--FASGS 321 (538)
Q Consensus 264 ----l~~~l~~~~~------~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~--------~~~~l~~~l~~--~~~~~ 321 (538)
+...+..... ...........+.+.+. +++++||+||++... .+..+...+.. ...+.
T Consensus 78 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 157 (234)
T PF01637_consen 78 LSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNV 157 (234)
T ss_dssp CHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTE
T ss_pred HHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCc
Confidence 1111111100 01122223333333332 345999999996443 12222222111 13344
Q ss_pred EEEEeccchhhhhh--------cCCCeeEEcCCCCHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhcCCcHHHHHH
Q 009306 322 RIIITTRDRQVLAN--------CGVDEVYQMEELVHDDALRLFSRHAFGGDHPHESHTELACKTIKYARGVPLALEVL 391 (538)
Q Consensus 322 ~iiiTtR~~~~~~~--------~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~ 391 (538)
.+|+++....+... .+....+.|++|+.+++.+++....-..... ....+..+++++.+||+|..|..+
T Consensus 158 ~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~gG~P~~l~~~ 234 (234)
T PF01637_consen 158 SIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKELIKL-PFSDEDIEEIYSLTGGNPRYLQEL 234 (234)
T ss_dssp EEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC-------HHHHHHHHHHHTT-HHHHHHH
T ss_pred eEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHhhcc-cCCHHHHHHHHHHhCCCHHHHhcC
Confidence 55555555544433 2333459999999999999999875222111 235677899999999999998753
No 16
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.23 E-value=1.1e-09 Score=106.83 Aligned_cols=178 Identities=13% Similarity=0.094 Sum_probs=107.6
Q ss_pred ceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhhcCChHHHHHHHHHHHhcCCCCCCchh----hcHHHHH
Q 009306 211 VYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEETCRLGDLRQQLLSTLLNDGNVKNFLN----TDLNFQS 286 (538)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~----~~~~~l~ 286 (538)
...+.|+|++|+|||||++.++..+...-...+++.. .......++..++..++.... ..... .+...+.
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~-----~~~~~~~~l~~i~~~lG~~~~-~~~~~~~~~~l~~~l~ 116 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVN-----TRVDAEDLLRMVAADFGLETE-GRDKAALLRELEDFLI 116 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeC-----CCCCHHHHHHHHHHHcCCCCC-CCCHHHHHHHHHHHHH
Confidence 4578999999999999999999886532112223221 123445667777766654322 11111 1222222
Q ss_pred HH-hcCCCeEEEEecCCChH--HHHHHh---cCcCCCCCCCEEEEeccchhhhhhc----------CCCeeEEcCCCCHH
Q 009306 287 RR-LTRKKVLIVFDDVDHPR--QIKILV---GRLDLFASGSRIIITTRDRQVLANC----------GVDEVYQMEELVHD 350 (538)
Q Consensus 287 ~~-l~~k~~LlVlDdv~~~~--~~~~l~---~~l~~~~~~~~iiiTtR~~~~~~~~----------~~~~~~~l~~L~~~ 350 (538)
.. ..+++.+||+||++... .++.+. ...........|++|.... ....+ .....+.+++|+.+
T Consensus 117 ~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~ 195 (269)
T TIGR03015 117 EQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDRE 195 (269)
T ss_pred HHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHH
Confidence 22 25678999999997642 334332 2111112223455555432 11111 12346789999999
Q ss_pred HHHHHHHhhhcCCC--CCCCchHHHHHHHHHHhcCCcHHHHHHHHHh
Q 009306 351 DALRLFSRHAFGGD--HPHESHTELACKTIKYARGVPLALEVLGRYL 395 (538)
Q Consensus 351 ea~~Lf~~~~~~~~--~~~~~~~~~~~~i~~~~~G~PLal~~~~~~L 395 (538)
|..+++........ .......+..+.|++.++|+|..|+.++..+
T Consensus 196 e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 196 ETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 99999987763221 1223557889999999999999999999876
No 17
>PF05729 NACHT: NACHT domain
Probab=99.19 E-value=2.2e-10 Score=102.68 Aligned_cols=142 Identities=19% Similarity=0.287 Sum_probs=85.6
Q ss_pred eEEEEeccCCCchhHHHHHHHHhhccce------eeEEEEeehhhhhhcCChHHHHHHHHHHHhcCCCCCCchhhcHHHH
Q 009306 212 YKLGIWGIGGIGKTTIAGAIFNKISRHF------SGSYFARNVREAEETCRLGDLRQQLLSTLLNDGNVKNFLNTDLNFQ 285 (538)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f------~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l 285 (538)
|++.|+|.+|+||||+++.++..+.... ...+|.. .+..........+...+........ ..... .+
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~~---~~~~~---~~ 73 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFS-LRDISDSNNSRSLADLLFDQLPESI---APIEE---LL 73 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEe-ehhhhhccccchHHHHHHHhhccch---hhhHH---HH
Confidence 5789999999999999999998766543 2333333 3333332222233333333332211 11111 11
Q ss_pred HHH-hcCCCeEEEEecCCChHH---------HHHHh-cCcCC-CCCCCEEEEeccchhh---hhhcCCCeeEEcCCCCHH
Q 009306 286 SRR-LTRKKVLIVFDDVDHPRQ---------IKILV-GRLDL-FASGSRIIITTRDRQV---LANCGVDEVYQMEELVHD 350 (538)
Q Consensus 286 ~~~-l~~k~~LlVlDdv~~~~~---------~~~l~-~~l~~-~~~~~~iiiTtR~~~~---~~~~~~~~~~~l~~L~~~ 350 (538)
... ...++++||||++|+... +..++ ..+.. ..++++++||+|.... .........+++.+|+.+
T Consensus 74 ~~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~ 153 (166)
T PF05729_consen 74 QELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEE 153 (166)
T ss_pred HHHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHH
Confidence 112 246889999999975422 11122 11211 2568999999998755 333444468999999999
Q ss_pred HHHHHHHhhh
Q 009306 351 DALRLFSRHA 360 (538)
Q Consensus 351 ea~~Lf~~~~ 360 (538)
+..+++.+..
T Consensus 154 ~~~~~~~~~f 163 (166)
T PF05729_consen 154 DIKQYLRKYF 163 (166)
T ss_pred HHHHHHHHHh
Confidence 9999998764
No 18
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.08 E-value=3.6e-09 Score=112.65 Aligned_cols=283 Identities=13% Similarity=0.111 Sum_probs=150.0
Q ss_pred CCCCCCceeccchhHHHHHhhhc---CCCCceEEEEeccCCCchhHHHHHHHHhhccc-----ee--eEEEEeehhhhhh
Q 009306 184 HSENEDLVGVRLPMKEIESLLRT---GSTNVYKLGIWGIGGIGKTTIAGAIFNKISRH-----FS--GSYFARNVREAEE 253 (538)
Q Consensus 184 ~~~~~~~vGR~~~l~~l~~~L~~---~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-----f~--~~~~~~~~~~~~~ 253 (538)
...|+.++||+.|+++|...|.. +.....++.|+|++|.|||+.++.+..++... .+ ..+++.+. .
T Consensus 751 DYVPD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm----~ 826 (1164)
T PTZ00112 751 DVVPKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGM----N 826 (1164)
T ss_pred ccCCCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCC----c
Confidence 35678899999999999998865 23334567899999999999999998876432 11 23444421 1
Q ss_pred cCChHHHHHHHHHHHhcCCCCC-CchhhcHHHHHHHhc---CCCeEEEEecCCChH--HHHHHhcCcCCC-CCCCEEEE-
Q 009306 254 TCRLGDLRQQLLSTLLNDGNVK-NFLNTDLNFQSRRLT---RKKVLIVFDDVDHPR--QIKILVGRLDLF-ASGSRIII- 325 (538)
Q Consensus 254 ~~~~~~l~~~l~~~l~~~~~~~-~~~~~~~~~l~~~l~---~k~~LlVlDdv~~~~--~~~~l~~~l~~~-~~~~~iii- 325 (538)
......+...+..++....... ......+..+...+. ....+||||+++... .-+.|...+.+. ..+++|++
T Consensus 827 Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLI 906 (1164)
T PTZ00112 827 VVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLI 906 (1164)
T ss_pred cCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEE
Confidence 2344555666666664433221 222334444444431 234589999997542 112222111111 23455443
Q ss_pred -eccchhh----hhhcC---CCeeEEcCCCCHHHHHHHHHhhhcCCCCCCCchHHHHHHHHH---HhcC-CcHHHHHHHH
Q 009306 326 -TTRDRQV----LANCG---VDEVYQMEELVHDDALRLFSRHAFGGDHPHESHTELACKTIK---YARG-VPLALEVLGR 393 (538)
Q Consensus 326 -TtR~~~~----~~~~~---~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~---~~~G-~PLal~~~~~ 393 (538)
++.+..+ .+.+. ....+..+|++.++..+++..++-.. ......+....+++ ...| .=.||.++-.
T Consensus 907 GISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A--~gVLdDdAIELIArkVAq~SGDARKALDILRr 984 (1164)
T PTZ00112 907 AISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENC--KEIIDHTAIQLCARKVANVSGDIRKALQICRK 984 (1164)
T ss_pred EecCchhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhC--CCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHH
Confidence 3332111 11111 12246679999999999999998322 11122333333332 3334 4456655554
Q ss_pred HhcCC-----CHHHHHHHHHHhhcCCCCcHHHHHHHhHhCCCHHhHHHhhccccccC-----CCCHHHH----HHHHH--
Q 009306 394 YLYGK-----RREVWENAKSKWETAPPKGIQDALKISYDGLDDKEQNIFLDIACFFI-----DEDRDTA----TKFLD-- 457 (538)
Q Consensus 394 ~L~~~-----~~~~~~~~l~~l~~~~~~~v~~~l~~s~~~L~~~~k~~l~~la~f~~-----~~~~~~l----~~l~~-- 457 (538)
....+ ..+....+...+ -...+...+..||.++|.+|..+..... .++...+ ..++.
T Consensus 985 AgEikegskVT~eHVrkAleei-------E~srI~e~IktLPlHqKLVLlALIlLlk~tg~~~i~TGEVYerYk~Lce~~ 1057 (1164)
T PTZ00112 985 AFENKRGQKIVPRDITEATNQL-------FDSPLTNAINYLPWPFKMFLTCLIVELRMLNDFIIPYKKVLNRYKVLVETS 1057 (1164)
T ss_pred HHhhcCCCccCHHHHHHHHHHH-------HhhhHHHHHHcCCHHHHHHHHHHHHHHhhcCCCceeHHHHHHHHHHHHHhh
Confidence 44221 111222222211 1122445667899998888875543321 1332222 22222
Q ss_pred -----hCCCC--hHHHHHHHhhCCceeEe
Q 009306 458 -----DCEFF--ATSAIEVLVDKHLITIS 479 (538)
Q Consensus 458 -----~~~~~--~~~~l~~L~~~~Li~~~ 479 (538)
.+... ....|.+|...|+|.+.
T Consensus 1058 Gk~iGv~plTqRV~d~L~eL~~LGIIl~e 1086 (1164)
T PTZ00112 1058 GKYIGMCSNNELFKIMLDKLVKMGILLIR 1086 (1164)
T ss_pred hhhcCCCCcHHHHHHHHHHHHhcCeEEec
Confidence 11111 34578899999999986
No 19
>PRK06893 DNA replication initiation factor; Validated
Probab=99.06 E-value=4.3e-09 Score=99.52 Aligned_cols=155 Identities=16% Similarity=0.201 Sum_probs=96.6
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhhcCChHHHHHHHHHHHhcCCCCCCchhhcHHHHHHHh
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEETCRLGDLRQQLLSTLLNDGNVKNFLNTDLNFQSRRL 289 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~~l 289 (538)
..+.+.|+|++|+|||+|+.++++....+...+.|+... .. ...... +.+.+
T Consensus 38 ~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~----~~---~~~~~~---------------------~~~~~ 89 (229)
T PRK06893 38 QQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLS----KS---QYFSPA---------------------VLENL 89 (229)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHH----Hh---hhhhHH---------------------HHhhc
Confidence 345789999999999999999999876655566666521 00 000001 11111
Q ss_pred cCCCeEEEEecCCCh---HHHH-HHhcCcCCC-CCCCEEE-Eeccc---------hhhhhhcCCCeeEEcCCCCHHHHHH
Q 009306 290 TRKKVLIVFDDVDHP---RQIK-ILVGRLDLF-ASGSRII-ITTRD---------RQVLANCGVDEVYQMEELVHDDALR 354 (538)
Q Consensus 290 ~~k~~LlVlDdv~~~---~~~~-~l~~~l~~~-~~~~~ii-iTtR~---------~~~~~~~~~~~~~~l~~L~~~ea~~ 354 (538)
.+.-+|+|||++.. ..++ .+...+... ..+..+| +|+.. +.+...+.....+++++++.++.++
T Consensus 90 -~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~ 168 (229)
T PRK06893 90 -EQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKII 168 (229)
T ss_pred -ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHH
Confidence 13359999999753 2222 222222111 2355554 44443 2344444455688999999999999
Q ss_pred HHHhhhcCCCCCCCchHHHHHHHHHHhcCCcHHHHHHHHHh
Q 009306 355 LFSRHAFGGDHPHESHTELACKTIKYARGVPLALEVLGRYL 395 (538)
Q Consensus 355 Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~L 395 (538)
++.+.++.. .....++...-+++.+.|..-.+..+-..|
T Consensus 169 iL~~~a~~~--~l~l~~~v~~~L~~~~~~d~r~l~~~l~~l 207 (229)
T PRK06893 169 VLQRNAYQR--GIELSDEVANFLLKRLDRDMHTLFDALDLL 207 (229)
T ss_pred HHHHHHHHc--CCCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 999888533 234557888899999988876665555444
No 20
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=1.8e-08 Score=101.02 Aligned_cols=282 Identities=14% Similarity=0.143 Sum_probs=169.9
Q ss_pred CCCCCCceeccchhHHHHHhhhc--CCCCceEEEEeccCCCchhHHHHHHHHhhccceee--EEEEeehhhhhhcCChHH
Q 009306 184 HSENEDLVGVRLPMKEIESLLRT--GSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSG--SYFARNVREAEETCRLGD 259 (538)
Q Consensus 184 ~~~~~~~vGR~~~l~~l~~~L~~--~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~--~~~~~~~~~~~~~~~~~~ 259 (538)
...|+.+.+|+.+++++...|.. .+....-+.|+|++|.|||+.++.+++++...... .+++.+ ........
T Consensus 13 ~~iP~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc----~~~~t~~~ 88 (366)
T COG1474 13 DYIPEELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINC----LELRTPYQ 88 (366)
T ss_pred CCCcccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEee----eeCCCHHH
Confidence 34556799999999999988765 22223348999999999999999999988766433 466653 23456677
Q ss_pred HHHHHHHHHhcCCCCCCchhhcHHHHHHHhc--CCCeEEEEecCCChH-----HHHHHhcCcCCCCCCCEE--EEeccch
Q 009306 260 LRQQLLSTLLNDGNVKNFLNTDLNFQSRRLT--RKKVLIVFDDVDHPR-----QIKILVGRLDLFASGSRI--IITTRDR 330 (538)
Q Consensus 260 l~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~-----~~~~l~~~l~~~~~~~~i--iiTtR~~ 330 (538)
++..++..++..........+....+.+.+. ++.++||||+++... .+-.+....... .++| |..+-+.
T Consensus 89 i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~--~~~v~vi~i~n~~ 166 (366)
T COG1474 89 VLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGEN--KVKVSIIAVSNDD 166 (366)
T ss_pred HHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhcccc--ceeEEEEEEeccH
Confidence 7778888776444434556666677777664 477899999997542 222333222211 3443 3333333
Q ss_pred hhh--------hhcCCCeeEEcCCCCHHHHHHHHHhhh---cCCCCCCCchHHHHHHHHHHhcCCc-HHHHHHHHHh--c
Q 009306 331 QVL--------ANCGVDEVYQMEELVHDDALRLFSRHA---FGGDHPHESHTELACKTIKYARGVP-LALEVLGRYL--Y 396 (538)
Q Consensus 331 ~~~--------~~~~~~~~~~l~~L~~~ea~~Lf~~~~---~~~~~~~~~~~~~~~~i~~~~~G~P-Lal~~~~~~L--~ 396 (538)
... ..++. ..+..+|.+.+|..+++..++ |......+.--+++..++...+|-. .||..+-... .
T Consensus 167 ~~~~~ld~rv~s~l~~-~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A~eiA 245 (366)
T COG1474 167 KFLDYLDPRVKSSLGP-SEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRRAGEIA 245 (366)
T ss_pred HHHHHhhhhhhhccCc-ceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHHHHHHH
Confidence 222 22222 347899999999999999987 3334444455556666666666533 3444333322 1
Q ss_pred C--C----CHHHHHHHHHHhhcCCCCcHHHHHHHhHhCCCHHhHHHhhccccccCCCCHHHH----HHHHHhCCC---Ch
Q 009306 397 G--K----RREVWENAKSKWETAPPKGIQDALKISYDGLDDKEQNIFLDIACFFIDEDRDTA----TKFLDDCEF---FA 463 (538)
Q Consensus 397 ~--~----~~~~~~~~l~~l~~~~~~~v~~~l~~s~~~L~~~~k~~l~~la~f~~~~~~~~l----~~l~~~~~~---~~ 463 (538)
. . ..+.-..+.. .--...+...+..|+.+++.++..++....++....+ ..+...... ..
T Consensus 246 e~~~~~~v~~~~v~~a~~-------~~~~~~~~~~~~~L~~~~ki~L~~i~~~~~~~~~~~~y~~y~~~~~~~~~~~~~~ 318 (366)
T COG1474 246 EREGSRKVSEDHVREAQE-------EIERDVLEEVLKTLPLHQKIVLLAIVELTVEISTGELYDVYESLCERLRTSQRRF 318 (366)
T ss_pred HhhCCCCcCHHHHHHHHH-------HhhHHHHHHHHHcCCHhHHHHHHHHHHhcCCCChHHHHHHHHHHHhhhCchHHHH
Confidence 1 0 1111111100 0112234556889999999888877766444444333 333333333 33
Q ss_pred HHHHHHHhhCCceeEe
Q 009306 464 TSAIEVLVDKHLITIS 479 (538)
Q Consensus 464 ~~~l~~L~~~~Li~~~ 479 (538)
...+..|...|+|...
T Consensus 319 ~~ii~~L~~lgiv~~~ 334 (366)
T COG1474 319 SDIISELEGLGIVSAS 334 (366)
T ss_pred HHHHHHHHhcCeEEee
Confidence 4578899999999854
No 21
>COG3903 Predicted ATPase [General function prediction only]
Probab=99.04 E-value=3.7e-10 Score=110.57 Aligned_cols=283 Identities=17% Similarity=0.174 Sum_probs=189.1
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhhcCChHHHHHHHHHHHhcCCCCCCchhhcHHHHHHHh
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEETCRLGDLRQQLLSTLLNDGNVKNFLNTDLNFQSRRL 289 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~~l 289 (538)
..+.+.++|+|||||||++-+... .+..|...++..+.....++..+...+.. .++... ..-+.....+....
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~-~~~~~~~~v~~vdl~pitD~~~v~~~~ag---~~gl~~---~~g~~~~~~~~~~~ 85 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH-AASEYADGVAFVDLAPITDPALVFPTLAG---ALGLHV---QPGDSAVDTLVRRI 85 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh-HhhhcccceeeeeccccCchhHhHHHHHh---hccccc---ccchHHHHHHHHHH
Confidence 467899999999999999999999 88889888887777665554443333222 222211 11122333455666
Q ss_pred cCCCeEEEEecCCChH-HHHHHhcCcCCCCCCCEEEEeccchhhhhhcCCCeeEEcCCCCHH-HHHHHHHhhhcCCC---
Q 009306 290 TRKKVLIVFDDVDHPR-QIKILVGRLDLFASGSRIIITTRDRQVLANCGVDEVYQMEELVHD-DALRLFSRHAFGGD--- 364 (538)
Q Consensus 290 ~~k~~LlVlDdv~~~~-~~~~l~~~l~~~~~~~~iiiTtR~~~~~~~~~~~~~~~l~~L~~~-ea~~Lf~~~~~~~~--- 364 (538)
.+++.++|+||-.+.. +...+...+....+...++.|+|.... ......+.+++|+.. ++.++|...+....
T Consensus 86 ~~rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l---~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f 162 (414)
T COG3903 86 GDRRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAIL---VAGEVHRRVPSLSLFDEAIELFVCRAVLVALSF 162 (414)
T ss_pred hhhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhc---ccccccccCCccccCCchhHHHHHHHHHhccce
Confidence 7889999999986543 333333333333456678888887643 233567788888876 78899887762221
Q ss_pred CCCCchHHHHHHHHHHhcCCcHHHHHHHHHhcCCCHHHHHHHHHH----hhcCC------CCcHHHHHHHhHhCCCHHhH
Q 009306 365 HPHESHTELACKTIKYARGVPLALEVLGRYLYGKRREVWENAKSK----WETAP------PKGIQDALKISYDGLDDKEQ 434 (538)
Q Consensus 365 ~~~~~~~~~~~~i~~~~~G~PLal~~~~~~L~~~~~~~~~~~l~~----l~~~~------~~~v~~~l~~s~~~L~~~~k 434 (538)
-...........|.++..|.|++|+.+++..+.-.....-.-++. +.... .......+.-|+.-|+..++
T Consensus 163 ~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgwe~ 242 (414)
T COG3903 163 WLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGWER 242 (414)
T ss_pred eecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhHHH
Confidence 112334566789999999999999999999877655433333322 22221 13455678888999999999
Q ss_pred HHhhccccccCCCCHHHHHHHHHhCC-----CChHHHHHHHhhCCceeEec---CCcEEecHHHHHHHHHHHhhcC
Q 009306 435 NIFLDIACFFIDEDRDTATKFLDDCE-----FFATSAIEVLVDKHLITISV---LNKIEMHYLLRAMGREIVRQES 502 (538)
Q Consensus 435 ~~l~~la~f~~~~~~~~l~~l~~~~~-----~~~~~~l~~L~~~~Li~~~~---~~~~~~H~lv~~~~~~~~~~~~ 502 (538)
..+..++.|...+..+.......... +..-..+..|++++++...+ .-+|+.-.-++.|+.+.+.+..
T Consensus 243 ~~~~rLa~~~g~f~~~l~~~~a~g~~~~~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~YalaeL~r~~ 318 (414)
T COG3903 243 ALFGRLAVFVGGFDLGLALAVAAGADVDVPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYALAELHRSG 318 (414)
T ss_pred HHhcchhhhhhhhcccHHHHHhcCCccccchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999998888774333332222 22334677899999988553 3357888888888888877653
No 22
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=99.00 E-value=2.2e-09 Score=105.11 Aligned_cols=97 Identities=26% Similarity=0.415 Sum_probs=81.9
Q ss_pred CCCCCCCCCcccEEEcCcccccccchHHHHHHHHhhCCCeeEeeC-CCCCCCcchHHHHHHHHhcceEEEEeccCccc--
Q 009306 8 YASLTNPEIKYDVFLSFGGEDTRESFTSHLYSALSRETVETFIDD-DLRRGDEISQSLLDAIEASSISIIIFSESYAS-- 84 (538)
Q Consensus 8 ~~~~~~~~~~~dvFiSy~~~D~~~~~~~~l~~~l~~~g~~~~~d~-~~~~g~~~~~~i~~~i~~s~~~i~v~S~~y~~-- 84 (538)
.+.-....++.||||||+.. +....++-|...|.-+|++||+|- .+..|. |-+.+.+.|..++.+|.|+|||.++
T Consensus 603 ~v~~a~~skq~DVFISYRRs-tGnQLASLiKV~LQL~GyrVFIDVdKL~AGK-FdssLlkni~aAkhFiLVLtP~sLDr~ 680 (832)
T KOG3678|consen 603 DVEVAMLSKQIDVFISYRRS-TGNQLASLIKVLLQLRGYRVFIDVDKLYAGK-FDSSLLKNIQAAKHFILVLTPNSLDRL 680 (832)
T ss_pred ccccccccCCcceEEEeecc-ccHHHHHHHHHHHHhcCceEEEehhhhhccc-ccHHHHHHHHhhheeEEEeCcchHHHH
Confidence 33445567899999999765 345789999999999999999997 888887 5689999999999999999998764
Q ss_pred ------chhhHHHHHHHHHHHhhcCCeEEEEE
Q 009306 85 ------SRWCLDELLKILECKKEYAQIVVPVF 110 (538)
Q Consensus 85 ------s~~c~~El~~~~~~~~~~~~~v~pv~ 110 (538)
-.|...|+..+++++++ |||||
T Consensus 681 lnD~nCeDWVHKEl~~Afe~~KN----IiPI~ 708 (832)
T KOG3678|consen 681 LNDDNCEDWVHKELKCAFEHQKN----IIPIF 708 (832)
T ss_pred hccccHHHHHHHHHHHHHHhcCC----eeeee
Confidence 35888999999998865 99999
No 23
>PF14516 AAA_35: AAA-like domain
Probab=98.99 E-value=1.9e-07 Score=93.32 Aligned_cols=282 Identities=12% Similarity=0.103 Sum_probs=153.7
Q ss_pred CCCCCCceeccchhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhh--hcCChHHHH
Q 009306 184 HSENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAE--ETCRLGDLR 261 (538)
Q Consensus 184 ~~~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~--~~~~~~~l~ 261 (538)
+...+..|+|...-+++.+.+.. ....+.|.|+..+|||+|...+.+...+.--.+++++ +.... .......++
T Consensus 7 ~~~~~~Yi~R~~~e~~~~~~i~~---~G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id-~~~~~~~~~~~~~~f~ 82 (331)
T PF14516_consen 7 PLDSPFYIERPPAEQECYQEIVQ---PGSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYID-LQQLGSAIFSDLEQFL 82 (331)
T ss_pred CCCCCcccCchHHHHHHHHHHhc---CCCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEE-eecCCCcccCCHHHHH
Confidence 45667888999666666666653 2447999999999999999999988765533444554 32222 123455555
Q ss_pred HHHHHHHhcCCCCCC-----------chhhcHHHHHHHh---cCCCeEEEEecCCChH----HHHHHhcCcC-------C
Q 009306 262 QQLLSTLLNDGNVKN-----------FLNTDLNFQSRRL---TRKKVLIVFDDVDHPR----QIKILVGRLD-------L 316 (538)
Q Consensus 262 ~~l~~~l~~~~~~~~-----------~~~~~~~~l~~~l---~~k~~LlVlDdv~~~~----~~~~l~~~l~-------~ 316 (538)
+.++..+........ ........+.+.+ .+++++|+||++|..- ....++..+. .
T Consensus 83 ~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~ 162 (331)
T PF14516_consen 83 RWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKN 162 (331)
T ss_pred HHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhccc
Confidence 555555443322211 1112223333322 2689999999997431 1122222211 0
Q ss_pred CCC--CCEEEEeccch-hhhh-----hcCCCeeEEcCCCCHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhcCCcHHH
Q 009306 317 FAS--GSRIIITTRDR-QVLA-----NCGVDEVYQMEELVHDDALRLFSRHAFGGDHPHESHTELACKTIKYARGVPLAL 388 (538)
Q Consensus 317 ~~~--~~~iiiTtR~~-~~~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal 388 (538)
... ..++++....+ .... ..+....++|++++.+|...|+..+.. .......+.+...+||||..+
T Consensus 163 ~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~------~~~~~~~~~l~~~tgGhP~Lv 236 (331)
T PF14516_consen 163 NPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGL------EFSQEQLEQLMDWTGGHPYLV 236 (331)
T ss_pred CcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhc------cCCHHHHHHHHHHHCCCHHHH
Confidence 011 11222222111 1111 113345789999999999999987751 122344899999999999999
Q ss_pred HHHHHHhcCCCHHHHHHHHHHhhcCCCCcHHHHHHHhHhCC--CHHhHHHhhccccccCCCCHHHHHHHHHhC--CCChH
Q 009306 389 EVLGRYLYGKRREVWENAKSKWETAPPKGIQDALKISYDGL--DDKEQNIFLDIACFFIDEDRDTATKFLDDC--EFFAT 464 (538)
Q Consensus 389 ~~~~~~L~~~~~~~~~~~l~~l~~~~~~~v~~~l~~s~~~L--~~~~k~~l~~la~f~~~~~~~~l~~l~~~~--~~~~~ 464 (538)
+.++..+..... ..+..+..-.... ..-..-|+.-+..| .+..+.++.. ++... .....
T Consensus 237 ~~~~~~l~~~~~-~~~~l~~~a~~~~-~~~~~hL~~l~~~L~~~~~L~~~~~~---------------il~~~~~~~~~~ 299 (331)
T PF14516_consen 237 QKACYLLVEEQI-TLEQLLEEAITDN-GIYNDHLDRLLDRLQQNPELLEAYQQ---------------ILFSGEPVDLDS 299 (331)
T ss_pred HHHHHHHHHccC-cHHHHHHHHHHhc-ccHHHHHHHHHHHHccCHHHHHHHHH---------------HHhCCCCcccCh
Confidence 999999965321 1222222211111 11112233333334 2233333332 22221 11123
Q ss_pred HHHHHHhhCCceeEecCCcEEe-cHHHHHH
Q 009306 465 SAIEVLVDKHLITISVLNKIEM-HYLLRAM 493 (538)
Q Consensus 465 ~~l~~L~~~~Li~~~~~~~~~~-H~lv~~~ 493 (538)
.....|...|||... +|.+.. .++-+.+
T Consensus 300 ~~~~~L~~~GLV~~~-~~~~~~~n~iY~~y 328 (331)
T PF14516_consen 300 DDIYKLESLGLVKRD-GNQLEVRNPIYRQY 328 (331)
T ss_pred HHHHHHHHCCeEEEe-CCEEEEEcHHHHHH
Confidence 457789999999998 666554 4454444
No 24
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.96 E-value=7e-09 Score=94.54 Aligned_cols=180 Identities=21% Similarity=0.279 Sum_probs=101.8
Q ss_pred CCCCCCceeccchhHHHHHhhhc---CCCCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhhcCChHHH
Q 009306 184 HSENEDLVGVRLPMKEIESLLRT---GSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEETCRLGDL 260 (538)
Q Consensus 184 ~~~~~~~vGR~~~l~~l~~~L~~---~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l 260 (538)
|..-++|||.+..+..+.-++.. ..+....+.+|||+|+||||||..++++....|. +.+. +.-....++
T Consensus 20 P~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~---~~sg----~~i~k~~dl 92 (233)
T PF05496_consen 20 PKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVNFK---ITSG----PAIEKAGDL 92 (233)
T ss_dssp -SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT--EE---EEEC----CC--SCHHH
T ss_pred CCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCCeE---eccc----hhhhhHHHH
Confidence 34558999999999888766653 2344667999999999999999999999877663 2220 000111111
Q ss_pred HHHHHHHHhcCCCCCCchhhcHHHHHHHhcCCCeEEEEecCCC--hHHHHHHhcCcCCC--------CCC----------
Q 009306 261 RQQLLSTLLNDGNVKNFLNTDLNFQSRRLTRKKVLIVFDDVDH--PRQIKILVGRLDLF--------ASG---------- 320 (538)
Q Consensus 261 ~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~--~~~~~~l~~~l~~~--------~~~---------- 320 (538)
.. ++ ..+ .++.+|.+|+++. ..+-+.+.+.+..+ +++
T Consensus 93 ~~-il---------------------~~l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~ 149 (233)
T PF05496_consen 93 AA-IL---------------------TNL-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPP 149 (233)
T ss_dssp HH-HH---------------------HT---TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE---
T ss_pred HH-HH---------------------Hhc-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCC
Confidence 11 11 112 2455888899964 34445554433211 111
Q ss_pred -CEEEEeccchhhhhhcCC--CeeEEcCCCCHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhcCCcHHHHHHHHHh
Q 009306 321 -SRIIITTRDRQVLANCGV--DEVYQMEELVHDDALRLFSRHAFGGDHPHESHTELACKTIKYARGVPLALEVLGRYL 395 (538)
Q Consensus 321 -~~iiiTtR~~~~~~~~~~--~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~L 395 (538)
.-|=.|||...+...+.. .-+.+++..+.+|..+++.+.+ ....-+..++.+.+|+..+.|.|--..-+-+.+
T Consensus 150 FTligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a--~~l~i~i~~~~~~~Ia~rsrGtPRiAnrll~rv 225 (233)
T PF05496_consen 150 FTLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSA--RILNIEIDEDAAEEIARRSRGTPRIANRLLRRV 225 (233)
T ss_dssp -EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCC--HCTT-EE-HHHHHHHHHCTTTSHHHHHHHHHHH
T ss_pred ceEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHH--HHhCCCcCHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 224456776544333322 2345899999999999998876 233445678899999999999996555444444
No 25
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.94 E-value=3.9e-08 Score=104.44 Aligned_cols=201 Identities=12% Similarity=0.089 Sum_probs=115.5
Q ss_pred CCCCCCceeccchhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhhcCChHHHHHH
Q 009306 184 HSENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEETCRLGDLRQQ 263 (538)
Q Consensus 184 ~~~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ 263 (538)
|...+++||.+..++.|..++..+. -...+.++|+.|+||||+|+.+++.+...-.. -... ++ .......+...
T Consensus 12 PqtFdEVIGQe~Vv~~L~~aL~~gR-L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~-~~~P-CG---~C~sCr~I~~G 85 (830)
T PRK07003 12 PKDFASLVGQEHVVRALTHALDGGR-LHHAYLFTGTRGVGKTTLSRIFAKALNCETGV-TSQP-CG---VCRACREIDEG 85 (830)
T ss_pred CCcHHHHcCcHHHHHHHHHHHhcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCccCC-CCCC-Cc---ccHHHHHHhcC
Confidence 3445789999999999999987542 24567899999999999999999876421000 0000 00 00000000000
Q ss_pred HHHHHhcCC-CCCCchhhcHHHHHHH----hcCCCeEEEEecCCCh--HHHHHHhcCcCCCCCCCEEEEeccchhh-hhh
Q 009306 264 LLSTLLNDG-NVKNFLNTDLNFQSRR----LTRKKVLIVFDDVDHP--RQIKILVGRLDLFASGSRIIITTRDRQV-LAN 335 (538)
Q Consensus 264 l~~~l~~~~-~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~iiiTtR~~~~-~~~ 335 (538)
-...+.... .....+++....+... ..++.-++|||+++.. .....|+..+.....+.++|++|.+... ...
T Consensus 86 ~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~T 165 (830)
T PRK07003 86 RFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVT 165 (830)
T ss_pred CCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccch
Confidence 000000000 0001111111111111 1234458899999755 3467777766655667888887776533 222
Q ss_pred c-CCCeeEEcCCCCHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhcCCc-HHHHHHH
Q 009306 336 C-GVDEVYQMEELVHDDALRLFSRHAFGGDHPHESHTELACKTIKYARGVP-LALEVLG 392 (538)
Q Consensus 336 ~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~P-Lal~~~~ 392 (538)
+ .....+.+.+++.++..+.+.+.+.. .......+....|++.++|.. -+|.++-
T Consensus 166 IrSRCq~f~Fk~Ls~eeIv~~L~~Il~~--EgI~id~eAL~lIA~~A~GsmRdALsLLd 222 (830)
T PRK07003 166 VLSRCLQFNLKQMPAGHIVSHLERILGE--ERIAFEPQALRLLARAAQGSMRDALSLTD 222 (830)
T ss_pred hhhheEEEecCCcCHHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 2 23468999999999999999887622 223345777889999998866 4555433
No 26
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.94 E-value=9.6e-08 Score=98.58 Aligned_cols=179 Identities=20% Similarity=0.308 Sum_probs=109.1
Q ss_pred CCCCCceeccchhHH---HHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhhcCChHHHH
Q 009306 185 SENEDLVGVRLPMKE---IESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEETCRLGDLR 261 (538)
Q Consensus 185 ~~~~~~vGR~~~l~~---l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~ 261 (538)
...+.+||++..+.. |..++..+ ....+.|+|++|+||||||+.+++.....|.. +... ..+... .
T Consensus 9 ~~l~d~vGq~~~v~~~~~L~~~i~~~--~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~---l~a~-----~~~~~~-i 77 (413)
T PRK13342 9 KTLDEVVGQEHLLGPGKPLRRMIEAG--RLSSMILWGPPGTGKTTLARIIAGATDAPFEA---LSAV-----TSGVKD-L 77 (413)
T ss_pred CCHHHhcCcHHHhCcchHHHHHHHcC--CCceEEEECCCCCCHHHHHHHHHHHhCCCEEE---Eecc-----cccHHH-H
Confidence 344679999988766 77777643 45568899999999999999999876554321 1100 011111 1
Q ss_pred HHHHHHHhcCCCCCCchhhcHHHHHHH-hcCCCeEEEEecCCCh--HHHHHHhcCcCCCCCCCEEEE--eccchh--hhh
Q 009306 262 QQLLSTLLNDGNVKNFLNTDLNFQSRR-LTRKKVLIVFDDVDHP--RQIKILVGRLDLFASGSRIII--TTRDRQ--VLA 334 (538)
Q Consensus 262 ~~l~~~l~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~iii--TtR~~~--~~~ 334 (538)
+.++.. .... ..+++.+|+||+++.. .+.+.++..+. .+..++| ||.+.. +..
T Consensus 78 r~ii~~-----------------~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~ 137 (413)
T PRK13342 78 REVIEE-----------------ARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNP 137 (413)
T ss_pred HHHHHH-----------------HHHhhhcCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccH
Confidence 111111 1111 1357789999999754 45556655543 2444444 233331 111
Q ss_pred h-cCCCeeEEcCCCCHHHHHHHHHhhhcCCCCCC-CchHHHHHHHHHHhcCCcHHHHHHHHH
Q 009306 335 N-CGVDEVYQMEELVHDDALRLFSRHAFGGDHPH-ESHTELACKTIKYARGVPLALEVLGRY 394 (538)
Q Consensus 335 ~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~-~~~~~~~~~i~~~~~G~PLal~~~~~~ 394 (538)
. ......+.+.+++.++..+++.+.+....... ....+....+++.++|.+..+..+...
T Consensus 138 aL~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le~ 199 (413)
T PRK13342 138 ALLSRAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLEL 199 (413)
T ss_pred HHhccceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 1 12236789999999999999988653211111 345677889999999999766554443
No 27
>PRK04195 replication factor C large subunit; Provisional
Probab=98.94 E-value=3.9e-08 Score=103.49 Aligned_cols=222 Identities=15% Similarity=0.162 Sum_probs=127.2
Q ss_pred cccCCCCCCCceeccchhHHHHHhhhc--CCCCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhhcCCh
Q 009306 180 DDTFHSENEDLVGVRLPMKEIESLLRT--GSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEETCRL 257 (538)
Q Consensus 180 ~~~~~~~~~~~vGR~~~l~~l~~~L~~--~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 257 (538)
....|.....++|.+..++.|..++.. .+...+.+.|+|++|+||||+|+.+++.+. ++. +.+. . +... .
T Consensus 6 eKyrP~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~--~~~-ieln-a---sd~r-~ 77 (482)
T PRK04195 6 EKYRPKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG--WEV-IELN-A---SDQR-T 77 (482)
T ss_pred hhcCCCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC--CCE-EEEc-c---cccc-c
Confidence 334455667899999999999998864 222267899999999999999999999863 221 1111 1 1111 1
Q ss_pred HHHHHHHHHHHhcCCCCCCchhhcHHHHHHHhcCCCeEEEEecCCChH------HHHHHhcCcCCCCCCCEEEEeccchh
Q 009306 258 GDLRQQLLSTLLNDGNVKNFLNTDLNFQSRRLTRKKVLIVFDDVDHPR------QIKILVGRLDLFASGSRIIITTRDRQ 331 (538)
Q Consensus 258 ~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~------~~~~l~~~l~~~~~~~~iiiTtR~~~ 331 (538)
......+......... ....++-+||||+++... .+..+...+. ..+..+|+|+.+..
T Consensus 78 ~~~i~~~i~~~~~~~s--------------l~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n~~~ 141 (482)
T PRK04195 78 ADVIERVAGEAATSGS--------------LFGARRKLILLDEVDGIHGNEDRGGARAILELIK--KAKQPIILTANDPY 141 (482)
T ss_pred HHHHHHHHHHhhccCc--------------ccCCCCeEEEEecCcccccccchhHHHHHHHHHH--cCCCCEEEeccCcc
Confidence 1222233222211100 011356799999997542 2455544433 23455666664431
Q ss_pred h-hh-h-cCCCeeEEcCCCCHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhcCCcHHHHHHHHHhcC-CCHHHHHHHH
Q 009306 332 V-LA-N-CGVDEVYQMEELVHDDALRLFSRHAFGGDHPHESHTELACKTIKYARGVPLALEVLGRYLYG-KRREVWENAK 407 (538)
Q Consensus 332 ~-~~-~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~L~~-~~~~~~~~~l 407 (538)
- .. . ......+++++++.++....+...+... ......+....|++.++|....+......+.. +..-.-..+-
T Consensus 142 ~~~~k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~e--gi~i~~eaL~~Ia~~s~GDlR~ain~Lq~~a~~~~~it~~~v~ 219 (482)
T PRK04195 142 DPSLRELRNACLMIEFKRLSTRSIVPVLKRICRKE--GIECDDEALKEIAERSGGDLRSAINDLQAIAEGYGKLTLEDVK 219 (482)
T ss_pred ccchhhHhccceEEEecCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCcHHHHH
Confidence 1 11 1 1234678999999999999988876332 22345778899999999987655443333332 2111111111
Q ss_pred HHhhcCCCCcHHHHHHHhHh
Q 009306 408 SKWETAPPKGIQDALKISYD 427 (538)
Q Consensus 408 ~~l~~~~~~~v~~~l~~s~~ 427 (538)
.........++..++...+.
T Consensus 220 ~~~~~d~~~~if~~l~~i~~ 239 (482)
T PRK04195 220 TLGRRDREESIFDALDAVFK 239 (482)
T ss_pred HhhcCCCCCCHHHHHHHHHC
Confidence 11223344566666665554
No 28
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.93 E-value=1.1e-08 Score=99.75 Aligned_cols=169 Identities=21% Similarity=0.332 Sum_probs=104.5
Q ss_pred CCCceeccchh---HHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhhcCChHHHHHH
Q 009306 187 NEDLVGVRLPM---KEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEETCRLGDLRQQ 263 (538)
Q Consensus 187 ~~~~vGR~~~l---~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ 263 (538)
-+.+||.+.-+ .-|..++.. +....+.+|||+|+||||||+.++......|...--+ ..++.++..
T Consensus 23 lde~vGQ~HLlg~~~~lrr~v~~--~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv--------~~gvkdlr~- 91 (436)
T COG2256 23 LDEVVGQEHLLGEGKPLRRAVEA--GHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAV--------TSGVKDLRE- 91 (436)
T ss_pred HHHhcChHhhhCCCchHHHHHhc--CCCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccc--------cccHHHHHH-
Confidence 35566665443 234444443 4567799999999999999999999877765422111 122222211
Q ss_pred HHHHHhcCCCCCCchhhcHHHH-HHHhcCCCeEEEEecCC--ChHHHHHHhcCcCCCCCCCEEEE--eccchhh---hhh
Q 009306 264 LLSTLLNDGNVKNFLNTDLNFQ-SRRLTRKKVLIVFDDVD--HPRQIKILVGRLDLFASGSRIII--TTRDRQV---LAN 335 (538)
Q Consensus 264 l~~~l~~~~~~~~~~~~~~~~l-~~~l~~k~~LlVlDdv~--~~~~~~~l~~~l~~~~~~~~iii--TtR~~~~---~~~ 335 (538)
..+.- .....+++.+|+||+|. +..+-+.|++.+. .|.-|+| ||-++.. ...
T Consensus 92 -----------------i~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~vE---~G~iilIGATTENPsF~ln~AL 151 (436)
T COG2256 92 -----------------IIEEARKNRLLGRRTILFLDEIHRFNKAQQDALLPHVE---NGTIILIGATTENPSFELNPAL 151 (436)
T ss_pred -----------------HHHHHHHHHhcCCceEEEEehhhhcChhhhhhhhhhhc---CCeEEEEeccCCCCCeeecHHH
Confidence 11111 12234789999999995 5677888887763 4655555 3444422 111
Q ss_pred cCCCeeEEcCCCCHHHHHHHHHhhhcCCCC-----CCCchHHHHHHHHHHhcCCcH
Q 009306 336 CGVDEVYQMEELVHDDALRLFSRHAFGGDH-----PHESHTELACKTIKYARGVPL 386 (538)
Q Consensus 336 ~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~-----~~~~~~~~~~~i~~~~~G~PL 386 (538)
.....++++++|+.++..+++.+-+..... .....++....++..++|-..
T Consensus 152 lSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R 207 (436)
T COG2256 152 LSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDAR 207 (436)
T ss_pred hhhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHH
Confidence 223578999999999999999883311111 112446677788888888754
No 29
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.92 E-value=2.3e-08 Score=94.64 Aligned_cols=175 Identities=17% Similarity=0.186 Sum_probs=104.3
Q ss_pred CCcee--ccchhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhhcCChHHHHHHHH
Q 009306 188 EDLVG--VRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEETCRLGDLRQQLL 265 (538)
Q Consensus 188 ~~~vG--R~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~ 265 (538)
++|++ .+..++.+.+++.. ...+.+.|+|++|+|||+||+.+++.........+++. ....... . ..++
T Consensus 15 ~~~~~~~~~~~~~~l~~~~~~--~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~-~~~~~~~--~----~~~~ 85 (226)
T TIGR03420 15 DNFYAGGNAELLAALRQLAAG--KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLP-LAELAQA--D----PEVL 85 (226)
T ss_pred cCcCcCCcHHHHHHHHHHHhc--CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEe-HHHHHHh--H----HHHH
Confidence 45653 33466677776542 34567999999999999999999987654433445554 2111100 0 0111
Q ss_pred HHHhcCCCCCCchhhcHHHHHHHhcCCCeEEEEecCCChH----HHHHHhcCcCC-CCCCCEEEEeccchh---------
Q 009306 266 STLLNDGNVKNFLNTDLNFQSRRLTRKKVLIVFDDVDHPR----QIKILVGRLDL-FASGSRIIITTRDRQ--------- 331 (538)
Q Consensus 266 ~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~----~~~~l~~~l~~-~~~~~~iiiTtR~~~--------- 331 (538)
..+. +.-+|||||++... ..+.+...+.. ...+..+|+|++...
T Consensus 86 ---------------------~~~~-~~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~ 143 (226)
T TIGR03420 86 ---------------------EGLE-QADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPD 143 (226)
T ss_pred ---------------------hhcc-cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHH
Confidence 1111 23489999996432 12333222211 123457888887432
Q ss_pred hhhhcCCCeeEEcCCCCHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhcCCcHHHHHHHHHh
Q 009306 332 VLANCGVDEVYQMEELVHDDALRLFSRHAFGGDHPHESHTELACKTIKYARGVPLALEVLGRYL 395 (538)
Q Consensus 332 ~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~L 395 (538)
+...+.....+++++++.++...++...+-. .......+....+.+.++|+|..+..+...+
T Consensus 144 L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~--~~~~~~~~~l~~L~~~~~gn~r~L~~~l~~~ 205 (226)
T TIGR03420 144 LRTRLAWGLVFQLPPLSDEEKIAALQSRAAR--RGLQLPDEVADYLLRHGSRDMGSLMALLDAL 205 (226)
T ss_pred HHHHHhcCeeEecCCCCHHHHHHHHHHHHHH--cCCCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 1122222457899999999999999876521 1233456778888999999998877665544
No 30
>PLN03025 replication factor C subunit; Provisional
Probab=98.92 E-value=4.3e-08 Score=97.70 Aligned_cols=186 Identities=14% Similarity=0.184 Sum_probs=109.6
Q ss_pred cCCCCCCCceeccchhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhcc-ceeeEEEEeehhhhhhcCChHHH
Q 009306 182 TFHSENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISR-HFSGSYFARNVREAEETCRLGDL 260 (538)
Q Consensus 182 ~~~~~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~l 260 (538)
..|..-..++|.+..++.|..++..+ ..+.+.++|++|+||||+|..+++.+.. .|...+.-.+ .+...+.. .
T Consensus 7 yrP~~l~~~~g~~~~~~~L~~~~~~~--~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln---~sd~~~~~-~ 80 (319)
T PLN03025 7 YRPTKLDDIVGNEDAVSRLQVIARDG--NMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELN---ASDDRGID-V 80 (319)
T ss_pred cCCCCHHHhcCcHHHHHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeec---ccccccHH-H
Confidence 34555678899999898888887643 3345789999999999999999988632 2322221111 11111111 2
Q ss_pred HHHHHHHHhcCCCCCCchhhcHHHHHHHhcCCCeEEEEecCCCh--HHHHHHhcCcCCCCCCCEEEEeccch-hhhhhc-
Q 009306 261 RQQLLSTLLNDGNVKNFLNTDLNFQSRRLTRKKVLIVFDDVDHP--RQIKILVGRLDLFASGSRIIITTRDR-QVLANC- 336 (538)
Q Consensus 261 ~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~iiiTtR~~-~~~~~~- 336 (538)
.+.....+...... ...++.-+++||+++.. .....+...+...+..+++++++... .+...+
T Consensus 81 vr~~i~~~~~~~~~-------------~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~ 147 (319)
T PLN03025 81 VRNKIKMFAQKKVT-------------LPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQ 147 (319)
T ss_pred HHHHHHHHHhcccc-------------CCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHH
Confidence 22222211111000 00134569999999754 33444444444335567777766443 222211
Q ss_pred CCCeeEEcCCCCHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhcCCcHHH
Q 009306 337 GVDEVYQMEELVHDDALRLFSRHAFGGDHPHESHTELACKTIKYARGVPLAL 388 (538)
Q Consensus 337 ~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal 388 (538)
.....+++++++.++..+.+...+-. .......+....+++.++|..-.+
T Consensus 148 SRc~~i~f~~l~~~~l~~~L~~i~~~--egi~i~~~~l~~i~~~~~gDlR~a 197 (319)
T PLN03025 148 SRCAIVRFSRLSDQEILGRLMKVVEA--EKVPYVPEGLEAIIFTADGDMRQA 197 (319)
T ss_pred HhhhcccCCCCCHHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHcCCCHHHH
Confidence 12357899999999999999887722 222344677889999999886433
No 31
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.88 E-value=6.3e-08 Score=96.84 Aligned_cols=185 Identities=14% Similarity=0.143 Sum_probs=109.2
Q ss_pred CCCCCCCceeccchhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhhcCChHHHHH
Q 009306 183 FHSENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEETCRLGDLRQ 262 (538)
Q Consensus 183 ~~~~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~ 262 (538)
.|..-.+++|++..++.+..++..+ ..+.+.|+|++|+||||+++.+++.+........++. .. .+...... ...
T Consensus 12 rP~~~~~~~g~~~~~~~l~~~i~~~--~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~-~~-~~~~~~~~-~~~ 86 (319)
T PRK00440 12 RPRTLDEIVGQEEIVERLKSYVKEK--NMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLE-LN-ASDERGID-VIR 86 (319)
T ss_pred CCCcHHHhcCcHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEE-ec-cccccchH-HHH
Confidence 3444567999999999999988753 3345799999999999999999987643321111111 00 01111111 111
Q ss_pred HHHHHHhcCCCCCCchhhcHHHHHHHhcCCCeEEEEecCCCh--HHHHHHhcCcCCCCCCCEEEEeccchh-hhhhc-CC
Q 009306 263 QLLSTLLNDGNVKNFLNTDLNFQSRRLTRKKVLIVFDDVDHP--RQIKILVGRLDLFASGSRIIITTRDRQ-VLANC-GV 338 (538)
Q Consensus 263 ~l~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~iiiTtR~~~-~~~~~-~~ 338 (538)
..+..+..... .....+-+|+||+++.. .....+...+....+.+.+|+++.... +.... ..
T Consensus 87 ~~i~~~~~~~~--------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr 152 (319)
T PRK00440 87 NKIKEFARTAP--------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSR 152 (319)
T ss_pred HHHHHHHhcCC--------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHH
Confidence 11111111100 00123458999999754 334445444444455677777764321 11111 12
Q ss_pred CeeEEcCCCCHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhcCCcHHH
Q 009306 339 DEVYQMEELVHDDALRLFSRHAFGGDHPHESHTELACKTIKYARGVPLAL 388 (538)
Q Consensus 339 ~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal 388 (538)
...+++++++.++....+...+... ......+.+..+++.++|.+.-+
T Consensus 153 ~~~~~~~~l~~~ei~~~l~~~~~~~--~~~i~~~al~~l~~~~~gd~r~~ 200 (319)
T PRK00440 153 CAVFRFSPLKKEAVAERLRYIAENE--GIEITDDALEAIYYVSEGDMRKA 200 (319)
T ss_pred hheeeeCCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHcCCCHHHH
Confidence 3468999999999999998877322 22345778889999999998654
No 32
>PTZ00202 tuzin; Provisional
Probab=98.88 E-value=1.7e-07 Score=93.18 Aligned_cols=182 Identities=12% Similarity=0.074 Sum_probs=108.7
Q ss_pred HHHHHhhhccccc------cCCCCCCCceeccchhHHHHHhhhc-CCCCceEEEEeccCCCchhHHHHHHHHhhccceee
Q 009306 169 EEIVNAILKRLDD------TFHSENEDLVGVRLPMKEIESLLRT-GSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSG 241 (538)
Q Consensus 169 ~~i~~~~~~~~~~------~~~~~~~~~vGR~~~l~~l~~~L~~-~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~ 241 (538)
.-.++.+.+..++ ..|.....|+||+.++..|...|.. +....+++.|+|++|+|||||++.+..... .
T Consensus 237 ~~Av~tL~~~~~~~~~~~~~lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~----~ 312 (550)
T PTZ00202 237 KVAVSTLTQPLNPRPSTLQSAPAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG----M 312 (550)
T ss_pred HHHHHHhhcccCCCcccccCCCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC----c
Confidence 3344555555444 3567889999999999999999975 333456899999999999999999997654 2
Q ss_pred EEEEeehhhhhhcCChHHHHHHHHHHHhcCCCCC--CchhhcHHHHHHHh-c-CCCeEEEEe--cCCChHHHHHHhcCcC
Q 009306 242 SYFARNVREAEETCRLGDLRQQLLSTLLNDGNVK--NFLNTDLNFQSRRL-T-RKKVLIVFD--DVDHPRQIKILVGRLD 315 (538)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~--~~~~~~~~~l~~~l-~-~k~~LlVlD--dv~~~~~~~~l~~~l~ 315 (538)
..++.+. .+..++++.++.+++...... .-.+.+.+.+.+.- . +++.+|||- +-.+..-+-.-.-.+.
T Consensus 313 ~qL~vNp------rg~eElLr~LL~ALGV~p~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~v~la 386 (550)
T PTZ00202 313 PAVFVDV------RGTEDTLRSVVKALGVPNVEACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEVVALA 386 (550)
T ss_pred eEEEECC------CCHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHHHHHH
Confidence 2444432 256889999999988632211 12233333333322 2 455555544 3333322111111122
Q ss_pred CCCCCCEEEEeccchhhh---hhcCCCeeEEcCCCCHHHHHHHHHhhh
Q 009306 316 LFASGSRIIITTRDRQVL---ANCGVDEVYQMEELVHDDALRLFSRHA 360 (538)
Q Consensus 316 ~~~~~~~iiiTtR~~~~~---~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 360 (538)
+-..-|+|++----+.+- ..+..-..|-+++++.++|.++.....
T Consensus 387 ~drr~ch~v~evpleslt~~~~~lprldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 387 CDRRLCHVVIEVPLESLTIANTLLPRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred ccchhheeeeeehHhhcchhcccCccceeEecCCCCHHHHHHHHhhcc
Confidence 223467777644322211 011123578899999999999776554
No 33
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.88 E-value=7e-08 Score=97.30 Aligned_cols=202 Identities=14% Similarity=0.093 Sum_probs=111.6
Q ss_pred CCCCCCCceeccchhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhccce-ee-EEEEeehhhhhhcCChHHH
Q 009306 183 FHSENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHF-SG-SYFARNVREAEETCRLGDL 260 (538)
Q Consensus 183 ~~~~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f-~~-~~~~~~~~~~~~~~~~~~l 260 (538)
.|.....++|++..++.|..++..+ ..+.+.|+|++|+||||+|+.+++.+.... .. .+++. ..+.... ....+
T Consensus 10 ~P~~~~~~~g~~~~~~~L~~~~~~~--~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~-~~~~~~~-~~~~~ 85 (337)
T PRK12402 10 RPALLEDILGQDEVVERLSRAVDSP--NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFN-VADFFDQ-GKKYL 85 (337)
T ss_pred CCCcHHHhcCCHHHHHHHHHHHhCC--CCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEec-hhhhhhc-chhhh
Confidence 3444577999999999999988753 334588999999999999999998765432 21 23332 1111000 00000
Q ss_pred HH--HHHHHHhcCCCCC-CchhhcHHHHHHHh-----cCCCeEEEEecCCCh--HHHHHHhcCcCCCCCCCEEEEeccch
Q 009306 261 RQ--QLLSTLLNDGNVK-NFLNTDLNFQSRRL-----TRKKVLIVFDDVDHP--RQIKILVGRLDLFASGSRIIITTRDR 330 (538)
Q Consensus 261 ~~--~l~~~l~~~~~~~-~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~iiiTtR~~ 330 (538)
.. .+...+....... ...+.....+.... ...+-+|||||++.. .....+...+......+++|+|+...
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~ 165 (337)
T PRK12402 86 VEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQP 165 (337)
T ss_pred hcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCCh
Confidence 00 0000000000000 00111111111111 133458999999754 22333443333334567788777543
Q ss_pred -hhhhhc-CCCeeEEcCCCCHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhcCCcHHHHH
Q 009306 331 -QVLANC-GVDEVYQMEELVHDDALRLFSRHAFGGDHPHESHTELACKTIKYARGVPLALEV 390 (538)
Q Consensus 331 -~~~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~ 390 (538)
.+...+ .....+++.+++.++...++...+... ......+....+++.++|++-.+..
T Consensus 166 ~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~--~~~~~~~al~~l~~~~~gdlr~l~~ 225 (337)
T PRK12402 166 SKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAE--GVDYDDDGLELIAYYAGGDLRKAIL 225 (337)
T ss_pred hhCchhhcCCceEEEecCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHcCCCHHHHHH
Confidence 222222 223578899999999999998876322 2235577888999999998765543
No 34
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.87 E-value=4.1e-08 Score=102.72 Aligned_cols=194 Identities=13% Similarity=0.068 Sum_probs=113.6
Q ss_pred CCCCCCceeccchhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhcc--ceeeEEEEeehhh-hhh--cCChH
Q 009306 184 HSENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISR--HFSGSYFARNVRE-AEE--TCRLG 258 (538)
Q Consensus 184 ~~~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~--~f~~~~~~~~~~~-~~~--~~~~~ 258 (538)
|..-+.++|.+..++.|..++..+. -...+.++|++|+||||+|+.+++.+.. .....|+.+..-. ... ...+.
T Consensus 10 P~~~~dvvGq~~v~~~L~~~i~~~~-l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~ 88 (504)
T PRK14963 10 PITFDEVVGQEHVKEVLLAALRQGR-LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVL 88 (504)
T ss_pred CCCHHHhcChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceE
Confidence 3344678999999999988887542 3456799999999999999999987642 1222333321000 000 00000
Q ss_pred HHHHHHHHHHhcCCCCC-CchhhcHHHHHH-HhcCCCeEEEEecCCCh--HHHHHHhcCcCCCCCCCEEEEeccch-hhh
Q 009306 259 DLRQQLLSTLLNDGNVK-NFLNTDLNFQSR-RLTRKKVLIVFDDVDHP--RQIKILVGRLDLFASGSRIIITTRDR-QVL 333 (538)
Q Consensus 259 ~l~~~l~~~l~~~~~~~-~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~iiiTtR~~-~~~ 333 (538)
.+ ....... ..+.+....+.. -..+++-++|||+++.. ..+..++..+....++..+|+++... .+.
T Consensus 89 el--------~~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~ 160 (504)
T PRK14963 89 EI--------DAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMP 160 (504)
T ss_pred Ee--------cccccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCC
Confidence 00 0000000 111111111111 01245568999999754 45666766665444555666555433 332
Q ss_pred hhc-CCCeeEEcCCCCHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhcCCcHHH
Q 009306 334 ANC-GVDEVYQMEELVHDDALRLFSRHAFGGDHPHESHTELACKTIKYARGVPLAL 388 (538)
Q Consensus 334 ~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal 388 (538)
..+ .....+++.+++.++..+.+.+.+... ......+.+..+++.++|.+.-+
T Consensus 161 ~~I~SRc~~~~f~~ls~~el~~~L~~i~~~e--gi~i~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 161 PTILSRTQHFRFRRLTEEEIAGKLRRLLEAE--GREAEPEALQLVARLADGAMRDA 214 (504)
T ss_pred hHHhcceEEEEecCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHcCCCHHHH
Confidence 222 234689999999999999998877322 22345678899999999998544
No 35
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.85 E-value=5.9e-08 Score=90.35 Aligned_cols=261 Identities=18% Similarity=0.224 Sum_probs=155.0
Q ss_pred CCCCCCceeccchhHHHHHhhhc---CCCCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhhcCChHHH
Q 009306 184 HSENEDLVGVRLPMKEIESLLRT---GSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEETCRLGDL 260 (538)
Q Consensus 184 ~~~~~~~vGR~~~l~~l~~~L~~---~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l 260 (538)
|..-..|||.+...++|.-.+.. .....--+.++||+|.||||||.-+++++...+.... ...-....++
T Consensus 22 P~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~ts-------Gp~leK~gDl 94 (332)
T COG2255 22 PKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITS-------GPALEKPGDL 94 (332)
T ss_pred cccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecc-------cccccChhhH
Confidence 34457899999988888777654 2233556999999999999999999998765532110 0000011111
Q ss_pred HHHHHHHHhcCCCCCCchhhcHHHHHHHhcCCCeEEEEecCCChH--HHHHHhcCcCCC--------CCCCE--------
Q 009306 261 RQQLLSTLLNDGNVKNFLNTDLNFQSRRLTRKKVLIVFDDVDHPR--QIKILVGRLDLF--------ASGSR-------- 322 (538)
Q Consensus 261 ~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~l~~~l~~~--------~~~~~-------- 322 (538)
. .++.. | ...-++.+|+++... .-+.+.+.+..+ +++++
T Consensus 95 a-aiLt~---------------------L-e~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLpp 151 (332)
T COG2255 95 A-AILTN---------------------L-EEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPP 151 (332)
T ss_pred H-HHHhc---------------------C-CcCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCC
Confidence 1 11111 1 233466788885431 112222222111 23332
Q ss_pred ---EEEeccchhhhhhcC--CCeeEEcCCCCHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhcCCcHHHHHHHHHhcC
Q 009306 323 ---IIITTRDRQVLANCG--VDEVYQMEELVHDDALRLFSRHAFGGDHPHESHTELACKTIKYARGVPLALEVLGRYLYG 397 (538)
Q Consensus 323 ---iiiTtR~~~~~~~~~--~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~L~~ 397 (538)
|=-|||.-.+...+. ..-+.+++-.+.+|..+++.+.+ ..-..+..++.+.+|++++.|-|.--.-+.+..+
T Consensus 152 FTLIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a--~~l~i~i~~~~a~eIA~rSRGTPRIAnRLLrRVR- 228 (332)
T COG2255 152 FTLIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSA--KILGIEIDEEAALEIARRSRGTPRIANRLLRRVR- 228 (332)
T ss_pred eeEeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHH--HHhCCCCChHHHHHHHHhccCCcHHHHHHHHHHH-
Confidence 446777654432221 22467899999999999999887 3333455678899999999999953333322221
Q ss_pred CCHHHHHHHHHHhhcCC--CC----cHHHHHHHhHhCCCHHhHHHhhcccccc--CCCCHHHHHHHHHhCCCChHHHHH-
Q 009306 398 KRREVWENAKSKWETAP--PK----GIQDALKISYDGLDDKEQNIFLDIACFF--IDEDRDTATKFLDDCEFFATSAIE- 468 (538)
Q Consensus 398 ~~~~~~~~~l~~l~~~~--~~----~v~~~l~~s~~~L~~~~k~~l~~la~f~--~~~~~~~l~~l~~~~~~~~~~~l~- 468 (538)
++.. ..... .. .....|..-=.+|+...+++|..+.-.+ +++..+.+...+..+....++.++
T Consensus 229 ----Dfa~----V~~~~~I~~~ia~~aL~~L~Vd~~GLd~~D~k~L~~li~~f~GgPVGl~tia~~lge~~~TiEdv~EP 300 (332)
T COG2255 229 ----DFAQ----VKGDGDIDRDIADKALKMLDVDELGLDEIDRKYLRALIEQFGGGPVGLDTIAAALGEDRDTIEDVIEP 300 (332)
T ss_pred ----HHHH----HhcCCcccHHHHHHHHHHhCcccccccHHHHHHHHHHHHHhCCCCccHHHHHHHhcCchhHHHHHHhH
Confidence 1111 11111 11 1222333333467788888887776555 557888888888766666666665
Q ss_pred HHhhCCceeEecCCcEE
Q 009306 469 VLVDKHLITISVLNKIE 485 (538)
Q Consensus 469 ~L~~~~Li~~~~~~~~~ 485 (538)
.|++.|+|+....|++-
T Consensus 301 yLiq~gfi~RTpRGR~a 317 (332)
T COG2255 301 YLIQQGFIQRTPRGRIA 317 (332)
T ss_pred HHHHhchhhhCCCccee
Confidence 69999999998878754
No 36
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.84 E-value=1.8e-07 Score=94.73 Aligned_cols=192 Identities=13% Similarity=0.104 Sum_probs=111.3
Q ss_pred CCCCCceeccchhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhcccee---eEEEEeehhhhhhcCChHHHH
Q 009306 185 SENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFS---GSYFARNVREAEETCRLGDLR 261 (538)
Q Consensus 185 ~~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~---~~~~~~~~~~~~~~~~~~~l~ 261 (538)
.....++|.+..++.+...+..+ .-.+.+.++|++|+||||+|+.+++.+..... ..|-.+ .....+.
T Consensus 13 ~~~~~iiGq~~~~~~l~~~~~~~-~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c--------~~c~~~~ 83 (363)
T PRK14961 13 QYFRDIIGQKHIVTAISNGLSLG-RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKC--------IICKEIE 83 (363)
T ss_pred CchhhccChHHHHHHHHHHHHcC-CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCC--------HHHHHHh
Confidence 34478999999999999888753 23456799999999999999999987642110 000000 0000000
Q ss_pred HHHHHHHhcCCCC-CCchhhcHHHHHHHh-----cCCCeEEEEecCCChH--HHHHHhcCcCCCCCCCEEEEeccch-hh
Q 009306 262 QQLLSTLLNDGNV-KNFLNTDLNFQSRRL-----TRKKVLIVFDDVDHPR--QIKILVGRLDLFASGSRIIITTRDR-QV 332 (538)
Q Consensus 262 ~~l~~~l~~~~~~-~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~~~~iiiTtR~~-~~ 332 (538)
......+...... ....++. ..+.+.+ .+++-++|||+++... ....++..+....+..++|++|.+. .+
T Consensus 84 ~~~~~d~~~~~~~~~~~v~~i-r~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l 162 (363)
T PRK14961 84 KGLCLDLIEIDAASRTKVEEM-REILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKI 162 (363)
T ss_pred cCCCCceEEecccccCCHHHH-HHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhh
Confidence 0000000000000 0011111 1111111 2344599999997653 4566766666555667777766544 33
Q ss_pred hhhc-CCCeeEEcCCCCHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhcCCcHHH
Q 009306 333 LANC-GVDEVYQMEELVHDDALRLFSRHAFGGDHPHESHTELACKTIKYARGVPLAL 388 (538)
Q Consensus 333 ~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal 388 (538)
...+ .....+++.+++.++..+.+...+... .....++.+..+++.++|.|..+
T Consensus 163 ~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~--g~~i~~~al~~ia~~s~G~~R~a 217 (363)
T PRK14961 163 PKTILSRCLQFKLKIISEEKIFNFLKYILIKE--SIDTDEYALKLIAYHAHGSMRDA 217 (363)
T ss_pred hHHHHhhceEEeCCCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHcCCCHHHH
Confidence 3222 224688999999999999988866222 23345677888999999988543
No 37
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.84 E-value=4.9e-07 Score=90.92 Aligned_cols=196 Identities=13% Similarity=0.107 Sum_probs=112.3
Q ss_pred CCCCCCceeccchhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhccce--eeE-EEE--eehhhhhhcCChH
Q 009306 184 HSENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHF--SGS-YFA--RNVREAEETCRLG 258 (538)
Q Consensus 184 ~~~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f--~~~-~~~--~~~~~~~~~~~~~ 258 (538)
|....+++|.+...+.|.+.+..+. -...+.++|+.|+||+|+|..++..+-..- ... +-. .... .....
T Consensus 15 P~~~~~iiGq~~~~~~L~~~~~~~r-l~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~-~~~~c--- 89 (365)
T PRK07471 15 PRETTALFGHAAAEAALLDAYRSGR-LHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLA-IDPDH--- 89 (365)
T ss_pred CCchhhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCcccccccccc-CCCCC---
Confidence 4455789999999999998887542 345688999999999999999998753211 000 000 0000 00000
Q ss_pred HHHHHHHHHH-------h---cCCC----CCCchhhcHHHHHHHh-----cCCCeEEEEecCCC--hHHHHHHhcCcCCC
Q 009306 259 DLRQQLLSTL-------L---NDGN----VKNFLNTDLNFQSRRL-----TRKKVLIVFDDVDH--PRQIKILVGRLDLF 317 (538)
Q Consensus 259 ~l~~~l~~~l-------~---~~~~----~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~--~~~~~~l~~~l~~~ 317 (538)
...+.+.... . .... ....+++. ..+.+.+ .+.+-++|||+++. ......++..+...
T Consensus 90 ~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~Vdqi-R~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEep 168 (365)
T PRK07471 90 PVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEV-RELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEP 168 (365)
T ss_pred hHHHHHHccCCCCeEEEecccccccccccccccHHHH-HHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcC
Confidence 0001110000 0 0000 00112221 1222222 24667999999964 45566777666654
Q ss_pred CCCCEEEEeccch-hhhhhc-CCCeeEEcCCCCHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhcCCcHHHHHH
Q 009306 318 ASGSRIIITTRDR-QVLANC-GVDEVYQMEELVHDDALRLFSRHAFGGDHPHESHTELACKTIKYARGVPLALEVL 391 (538)
Q Consensus 318 ~~~~~iiiTtR~~-~~~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~ 391 (538)
.++..+|++|.+. .++..+ .....+.+.+++.++..+++.... . ....+....++..++|+|+....+
T Consensus 169 p~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~--~----~~~~~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 169 PARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAG--P----DLPDDPRAALAALAEGSVGRALRL 238 (365)
T ss_pred CCCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhc--c----cCCHHHHHHHHHHcCCCHHHHHHH
Confidence 5566677766655 333332 234689999999999999998764 1 111223367899999999755444
No 38
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.83 E-value=2.4e-07 Score=100.46 Aligned_cols=196 Identities=14% Similarity=0.075 Sum_probs=115.3
Q ss_pred CCCCCceeccchhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhcccee---eEEEEee-hhhhhhcCChHHH
Q 009306 185 SENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFS---GSYFARN-VREAEETCRLGDL 260 (538)
Q Consensus 185 ~~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~---~~~~~~~-~~~~~~~~~~~~l 260 (538)
.....+||.+..++.|..++..+. -...+.++|+.|+||||+|+.+++.+..... ..|..+. +........ ..+
T Consensus 13 ~tFddIIGQe~Iv~~LknaI~~~r-l~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~-~Dv 90 (944)
T PRK14949 13 ATFEQMVGQSHVLHALTNALTQQR-LHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRF-VDL 90 (944)
T ss_pred CCHHHhcCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCC-ceE
Confidence 345789999999999998887532 2455689999999999999999987643210 0111110 000000000 000
Q ss_pred HHHHHHHHhcCCCCC-CchhhcHHHHHH-HhcCCCeEEEEecCCC--hHHHHHHhcCcCCCCCCCEEEEeccch-hhhhh
Q 009306 261 RQQLLSTLLNDGNVK-NFLNTDLNFQSR-RLTRKKVLIVFDDVDH--PRQIKILVGRLDLFASGSRIIITTRDR-QVLAN 335 (538)
Q Consensus 261 ~~~l~~~l~~~~~~~-~~~~~~~~~l~~-~l~~k~~LlVlDdv~~--~~~~~~l~~~l~~~~~~~~iiiTtR~~-~~~~~ 335 (538)
..+....... ..+.++...+.. -..++.-++|||+++. ......|+..+.....+.++|++|.+. .+...
T Consensus 91 -----iEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl~T 165 (944)
T PRK14949 91 -----IEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVT 165 (944)
T ss_pred -----EEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhchHH
Confidence 0000000000 111111111111 1235667999999974 456777777776656677776666543 33322
Q ss_pred c-CCCeeEEcCCCCHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhcCCcHHHH
Q 009306 336 C-GVDEVYQMEELVHDDALRLFSRHAFGGDHPHESHTELACKTIKYARGVPLALE 389 (538)
Q Consensus 336 ~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~ 389 (538)
+ .....|++.+|+.++..+.+...+-. .......+.+..|++.++|.|.-+.
T Consensus 166 IlSRCq~f~fkpLs~eEI~~~L~~il~~--EgI~~edeAL~lIA~~S~Gd~R~AL 218 (944)
T PRK14949 166 VLSRCLQFNLKSLTQDEIGTQLNHILTQ--EQLPFEAEALTLLAKAANGSMRDAL 218 (944)
T ss_pred HHHhheEEeCCCCCHHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHcCCCHHHHH
Confidence 2 23468999999999999999886622 1233456778899999999985443
No 39
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.83 E-value=4.7e-07 Score=95.12 Aligned_cols=194 Identities=11% Similarity=0.081 Sum_probs=113.4
Q ss_pred CCCCCCceeccchhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhcccee---e-----EEEEe-ehhhhhhc
Q 009306 184 HSENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFS---G-----SYFAR-NVREAEET 254 (538)
Q Consensus 184 ~~~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~---~-----~~~~~-~~~~~~~~ 254 (538)
|....++||.+..++.|...+..+. -...+.++|+.|+||||+|+.+++.+-..-. . -|-.+ .+......
T Consensus 12 PqtFddVIGQe~vv~~L~~al~~gR-LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG 90 (700)
T PRK12323 12 PRDFTTLVGQEHVVRALTHALEQQR-LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAG 90 (700)
T ss_pred CCcHHHHcCcHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcC
Confidence 3445789999999999999987542 2456789999999999999999987643100 0 00000 00000000
Q ss_pred CChHHHHHHHHHHHhcCCCCCCchhhcHHHHHHH----hcCCCeEEEEecCCCh--HHHHHHhcCcCCCCCCCEEEEecc
Q 009306 255 CRLGDLRQQLLSTLLNDGNVKNFLNTDLNFQSRR----LTRKKVLIVFDDVDHP--RQIKILVGRLDLFASGSRIIITTR 328 (538)
Q Consensus 255 ~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~iiiTtR 328 (538)
... +++ .+... ....+++..+.+... ..++.-++|||+++.. .....|+..+.....++.+|++|.
T Consensus 91 ~hp-Dvi-----EIdAa--s~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTt 162 (700)
T PRK12323 91 RFV-DYI-----EMDAA--SNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATT 162 (700)
T ss_pred CCC-cce-----Eeccc--ccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeC
Confidence 000 000 00000 001122222222111 1345569999999754 567778877766566777666555
Q ss_pred ch-hhhhhc-CCCeeEEcCCCCHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhcCCcHHH
Q 009306 329 DR-QVLANC-GVDEVYQMEELVHDDALRLFSRHAFGGDHPHESHTELACKTIKYARGVPLAL 388 (538)
Q Consensus 329 ~~-~~~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal 388 (538)
+. .+...+ .....+.+..++.++..+.+.+.+.. .......+....|++.++|.|.-.
T Consensus 163 ep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~--Egi~~d~eAL~~IA~~A~Gs~RdA 222 (700)
T PRK12323 163 DPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGE--EGIAHEVNALRLLAQAAQGSMRDA 222 (700)
T ss_pred ChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHcCCCHHHH
Confidence 43 333222 12357899999999999998876622 122334566788999999998543
No 40
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.82 E-value=6.5e-08 Score=91.63 Aligned_cols=174 Identities=17% Similarity=0.195 Sum_probs=100.6
Q ss_pred CCCCce-eccch-hHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhhcCChHHHHHH
Q 009306 186 ENEDLV-GVRLP-MKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEETCRLGDLRQQ 263 (538)
Q Consensus 186 ~~~~~v-GR~~~-l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ 263 (538)
..++|+ |...+ +..+.++.. +....+.+.|+|++|+|||+||+.+++.....-....++..... ...
T Consensus 16 ~~d~f~~~~~~~~~~~l~~~~~-~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~----------~~~ 84 (227)
T PRK08903 16 TFDNFVAGENAELVARLRELAA-GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASP----------LLA 84 (227)
T ss_pred hhcccccCCcHHHHHHHHHHHh-ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHh----------HHH
Confidence 345555 44333 334444433 22345679999999999999999999876443334455542110 000
Q ss_pred HHHHHhcCCCCCCchhhcHHHHHHHhcCCCeEEEEecCCCh--HHHHHHhcCcCCC-CCCC-EEEEeccchhh-------
Q 009306 264 LLSTLLNDGNVKNFLNTDLNFQSRRLTRKKVLIVFDDVDHP--RQIKILVGRLDLF-ASGS-RIIITTRDRQV------- 332 (538)
Q Consensus 264 l~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~-~~~~-~iiiTtR~~~~------- 332 (538)
+ .. ....-+|||||++.. ...+.+...+... ..+. .+|+|++....
T Consensus 85 ~----------------------~~-~~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~ 141 (227)
T PRK08903 85 F----------------------DF-DPEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLRED 141 (227)
T ss_pred H----------------------hh-cccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHH
Confidence 0 00 123347899999643 2223332222111 1233 36666654321
Q ss_pred -hhhcCCCeeEEcCCCCHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhcCCcHHHHHHHHHh
Q 009306 333 -LANCGVDEVYQMEELVHDDALRLFSRHAFGGDHPHESHTELACKTIKYARGVPLALEVLGRYL 395 (538)
Q Consensus 333 -~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~L 395 (538)
...+.....+++++++.++-..++...+- .......++....+++.+.|++..+..+...+
T Consensus 142 L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~--~~~v~l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 142 LRTRLGWGLVYELKPLSDADKIAALKAAAA--ERGLQLADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HHHHHhcCeEEEecCCCHHHHHHHHHHHHH--HcCCCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 11222246889999999988887776541 12234557788889999999998887777665
No 41
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.81 E-value=2.2e-07 Score=97.75 Aligned_cols=192 Identities=14% Similarity=0.116 Sum_probs=114.0
Q ss_pred CCCCCCceeccchhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhcccee---eEEEEe-ehhhhhh--cCCh
Q 009306 184 HSENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFS---GSYFAR-NVREAEE--TCRL 257 (538)
Q Consensus 184 ~~~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~---~~~~~~-~~~~~~~--~~~~ 257 (538)
|.....+||.+...+.|..++..+. -...+.++|++|+||||+|+.+++.+-.... ..|-.+ .+..... ..++
T Consensus 11 PktFddVIGQe~vv~~L~~aI~~gr-l~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDv 89 (702)
T PRK14960 11 PRNFNELVGQNHVSRALSSALERGR-LHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDL 89 (702)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCce
Confidence 3445789999999999999987542 2467899999999999999999987542110 000000 0000000 0000
Q ss_pred HHHHHHHHHHHhcCCCCCCchhhcHHHHHH----HhcCCCeEEEEecCCCh--HHHHHHhcCcCCCCCCCEEEEeccchh
Q 009306 258 GDLRQQLLSTLLNDGNVKNFLNTDLNFQSR----RLTRKKVLIVFDDVDHP--RQIKILVGRLDLFASGSRIIITTRDRQ 331 (538)
Q Consensus 258 ~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~----~l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~iiiTtR~~~ 331 (538)
..+ ... ....+++..+.+.. -..++.-++|||+++.. .....++..+.....+..+|++|.+..
T Consensus 90 iEI--------DAA--s~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~ 159 (702)
T PRK14960 90 IEI--------DAA--SRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQ 159 (702)
T ss_pred EEe--------ccc--ccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChH
Confidence 000 000 00111111111111 11245568999999754 456667766665556777887776542
Q ss_pred h-h-hhcCCCeeEEcCCCCHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhcCCcHHH
Q 009306 332 V-L-ANCGVDEVYQMEELVHDDALRLFSRHAFGGDHPHESHTELACKTIKYARGVPLAL 388 (538)
Q Consensus 332 ~-~-~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal 388 (538)
. . +.......+++.+++.++..+.+...+.. .......+....|++.++|.+..+
T Consensus 160 kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~k--EgI~id~eAL~~IA~~S~GdLRdA 216 (702)
T PRK14960 160 KLPITVISRCLQFTLRPLAVDEITKHLGAILEK--EQIAADQDAIWQIAESAQGSLRDA 216 (702)
T ss_pred hhhHHHHHhhheeeccCCCHHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHcCCCHHHH
Confidence 2 1 11223468899999999999999887622 223455777889999999988444
No 42
>PRK08727 hypothetical protein; Validated
Probab=98.79 E-value=1.7e-07 Score=88.88 Aligned_cols=169 Identities=14% Similarity=0.083 Sum_probs=99.9
Q ss_pred CCCceeccc-hhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhhcCChHHHHHHHH
Q 009306 187 NEDLVGVRL-PMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEETCRLGDLRQQLL 265 (538)
Q Consensus 187 ~~~~vGR~~-~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~ 265 (538)
.++|++... .+..+..... + .....+.|+|++|+|||+|+.++++....+...+.|+. ..+ ....+.
T Consensus 18 f~~f~~~~~n~~~~~~~~~~-~-~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~-~~~---------~~~~~~ 85 (233)
T PRK08727 18 FDSYIAAPDGLLAQLQALAA-G-QSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLP-LQA---------AAGRLR 85 (233)
T ss_pred hhhccCCcHHHHHHHHHHHh-c-cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEe-HHH---------hhhhHH
Confidence 355665544 3333333332 1 23356999999999999999999988766554556654 111 111110
Q ss_pred HHHhcCCCCCCchhhcHHHHHHHhcCCCeEEEEecCCCh----HHHHHHhcCcCC-CCCCCEEEEeccch---------h
Q 009306 266 STLLNDGNVKNFLNTDLNFQSRRLTRKKVLIVFDDVDHP----RQIKILVGRLDL-FASGSRIIITTRDR---------Q 331 (538)
Q Consensus 266 ~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~----~~~~~l~~~l~~-~~~~~~iiiTtR~~---------~ 331 (538)
. ..+.+ .+.-+|||||++.. .....+...+.. ...+..+|+|++.. .
T Consensus 86 ~------------------~~~~l-~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~d 146 (233)
T PRK08727 86 D------------------ALEAL-EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPD 146 (233)
T ss_pred H------------------HHHHH-hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHH
Confidence 0 01111 23358999999632 222233322211 13466799998753 2
Q ss_pred hhhhcCCCeeEEcCCCCHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhcCCcHHH
Q 009306 332 VLANCGVDEVYQMEELVHDDALRLFSRHAFGGDHPHESHTELACKTIKYARGVPLAL 388 (538)
Q Consensus 332 ~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal 388 (538)
+...+.....+++++++.++..+++.+++... .-...++....+++.++|-.-.+
T Consensus 147 L~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~--~l~l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 147 LRSRLAQCIRIGLPVLDDVARAAVLRERAQRR--GLALDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHHHHhcCceEEecCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHhCCCCHHHH
Confidence 22222335688999999999999999876332 23455777888888888766544
No 43
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.76 E-value=6.4e-08 Score=83.06 Aligned_cols=114 Identities=20% Similarity=0.272 Sum_probs=75.5
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhhccc-----eeeEEEEeehhhhhhcCChHHHHHHHHHHHhcCCCCCCchhhcHHH
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKISRH-----FSGSYFARNVREAEETCRLGDLRQQLLSTLLNDGNVKNFLNTDLNF 284 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-----f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ 284 (538)
+.+.+.|+|++|+|||++++.++...... -..++|+. .........+...++..+................
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~ 78 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVN----CPSSRTPRDFAQEILEALGLPLKSRQTSDELRSL 78 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEE----HHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEE----eCCCCCHHHHHHHHHHHhCccccccCCHHHHHHH
Confidence 34679999999999999999999976543 24455665 3334478888999999888765554556666677
Q ss_pred HHHHhcCCC-eEEEEecCCCh---HHHHHHhcCcCCCCCCCEEEEeccc
Q 009306 285 QSRRLTRKK-VLIVFDDVDHP---RQIKILVGRLDLFASGSRIIITTRD 329 (538)
Q Consensus 285 l~~~l~~k~-~LlVlDdv~~~---~~~~~l~~~l~~~~~~~~iiiTtR~ 329 (538)
+.+.+...+ .+|||||++.. ..++.+..... ..+..+|+..+.
T Consensus 79 ~~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 79 LIDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 777776555 59999999765 33444433333 566777777655
No 44
>PRK09087 hypothetical protein; Validated
Probab=98.73 E-value=5.1e-07 Score=84.88 Aligned_cols=143 Identities=12% Similarity=0.113 Sum_probs=90.6
Q ss_pred ceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhhcCChHHHHHHHHHHHhcCCCCCCchhhcHHHHHHHhc
Q 009306 211 VYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEETCRLGDLRQQLLSTLLNDGNVKNFLNTDLNFQSRRLT 290 (538)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~ 290 (538)
.+.+.|+|++|+|||+|++.++.... ..|+.. ..+...+... +.
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~-----~~~i~~----------~~~~~~~~~~---------------------~~ 87 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSD-----ALLIHP----------NEIGSDAANA---------------------AA 87 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcC-----CEEecH----------HHcchHHHHh---------------------hh
Confidence 46699999999999999999887642 224431 0111111111 11
Q ss_pred CCCeEEEEecCCCh----HHHHHHhcCcCCCCCCCEEEEeccch---------hhhhhcCCCeeEEcCCCCHHHHHHHHH
Q 009306 291 RKKVLIVFDDVDHP----RQIKILVGRLDLFASGSRIIITTRDR---------QVLANCGVDEVYQMEELVHDDALRLFS 357 (538)
Q Consensus 291 ~k~~LlVlDdv~~~----~~~~~l~~~l~~~~~~~~iiiTtR~~---------~~~~~~~~~~~~~l~~L~~~ea~~Lf~ 357 (538)
+ -+|+|||++.. +.+-.+...+. ..|..+|+|++.. .+...+....++++++++.++-.+++.
T Consensus 88 ~--~~l~iDDi~~~~~~~~~lf~l~n~~~--~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~ 163 (226)
T PRK09087 88 E--GPVLIEDIDAGGFDETGLFHLINSVR--QAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIF 163 (226)
T ss_pred c--CeEEEECCCCCCCCHHHHHHHHHHHH--hCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHH
Confidence 1 27888999532 22222232222 3467789888642 233344455789999999999999999
Q ss_pred hhhcCCCCCCCchHHHHHHHHHHhcCCcHHHHHHHHHh
Q 009306 358 RHAFGGDHPHESHTELACKTIKYARGVPLALEVLGRYL 395 (538)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~L 395 (538)
+.+-. ......++...-|++.+.|..-.+..+...|
T Consensus 164 ~~~~~--~~~~l~~ev~~~La~~~~r~~~~l~~~l~~L 199 (226)
T PRK09087 164 KLFAD--RQLYVDPHVVYYLVSRMERSLFAAQTIVDRL 199 (226)
T ss_pred HHHHH--cCCCCCHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 88722 2344567888899999988877766544433
No 45
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.73 E-value=3.4e-07 Score=85.75 Aligned_cols=186 Identities=17% Similarity=0.233 Sum_probs=103.2
Q ss_pred CCc-eeccchh--HHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhcccee--eEEEEeehhhhhhcCChHHHHH
Q 009306 188 EDL-VGVRLPM--KEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFS--GSYFARNVREAEETCRLGDLRQ 262 (538)
Q Consensus 188 ~~~-vGR~~~l--~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~--~~~~~~~~~~~~~~~~~~~l~~ 262 (538)
++| +|-..+. ..+.......+.....+.|+|+.|.|||.|.+++++++...++ .++|+. ...+..
T Consensus 8 dnfv~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~----------~~~f~~ 77 (219)
T PF00308_consen 8 DNFVVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS----------AEEFIR 77 (219)
T ss_dssp CCS--TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE----------HHHHHH
T ss_pred ccCCcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec----------HHHHHH
Confidence 344 4654432 2333333333333556899999999999999999998765443 344444 223333
Q ss_pred HHHHHHhcCCCCCCchhhcHHHHHHHhcCCCeEEEEecCCCh---HH-HHHHhcCcCC-CCCCCEEEEeccch-------
Q 009306 263 QLLSTLLNDGNVKNFLNTDLNFQSRRLTRKKVLIVFDDVDHP---RQ-IKILVGRLDL-FASGSRIIITTRDR------- 330 (538)
Q Consensus 263 ~l~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~---~~-~~~l~~~l~~-~~~~~~iiiTtR~~------- 330 (538)
.+...+.. .....+++.++ .-=+|+|||++.. .. .+.+...+.. ...|.++|+|++..
T Consensus 78 ~~~~~~~~---------~~~~~~~~~~~-~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~ 147 (219)
T PF00308_consen 78 EFADALRD---------GEIEEFKDRLR-SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGL 147 (219)
T ss_dssp HHHHHHHT---------TSHHHHHHHHC-TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS
T ss_pred HHHHHHHc---------ccchhhhhhhh-cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCcccccc
Confidence 33333322 11223344444 3448899999643 11 2222222211 13577899998543
Q ss_pred --hhhhhcCCCeeEEcCCCCHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhcCCcHHHHHHHHHh
Q 009306 331 --QVLANCGVDEVYQMEELVHDDALRLFSRHAFGGDHPHESHTELACKTIKYARGVPLALEVLGRYL 395 (538)
Q Consensus 331 --~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~L 395 (538)
.+.+.+...-++++++++.++-.+++.+++. .......++.+.-+++.+.+..-.|..+-..|
T Consensus 148 ~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~--~~~~~l~~~v~~~l~~~~~~~~r~L~~~l~~l 212 (219)
T PF00308_consen 148 LPDLRSRLSWGLVVELQPPDDEDRRRILQKKAK--ERGIELPEEVIEYLARRFRRDVRELEGALNRL 212 (219)
T ss_dssp -HHHHHHHHCSEEEEE----HHHHHHHHHHHHH--HTT--S-HHHHHHHHHHTTSSHHHHHHHHHHH
T ss_pred ChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHH--HhCCCCcHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 2223334556899999999999999999883 23334567788888888887776665554433
No 46
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.71 E-value=4.4e-07 Score=92.90 Aligned_cols=192 Identities=13% Similarity=0.085 Sum_probs=113.0
Q ss_pred CCCCCCceeccchhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhcccee---eEEEEeehhhhhhcCChHHH
Q 009306 184 HSENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFS---GSYFARNVREAEETCRLGDL 260 (538)
Q Consensus 184 ~~~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~---~~~~~~~~~~~~~~~~~~~l 260 (538)
|.....++|.+..+..|..++..+. -...+.++|++|+||||+|+.++..+..... ..|..+ .....+
T Consensus 14 P~~f~dvVGQe~iv~~L~~~i~~~r-i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C--------~sC~~i 84 (484)
T PRK14956 14 PQFFRDVIHQDLAIGALQNALKSGK-IGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNEC--------TSCLEI 84 (484)
T ss_pred CCCHHHHhChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCC--------cHHHHH
Confidence 3445789999999999999887542 2346899999999999999999987643211 111111 000011
Q ss_pred HHHHHHHHhcC---CCC-CCchhhcHHHHHHH-hcCCCeEEEEecCCCh--HHHHHHhcCcCCCCCCCEEEEeccc-hhh
Q 009306 261 RQQLLSTLLND---GNV-KNFLNTDLNFQSRR-LTRKKVLIVFDDVDHP--RQIKILVGRLDLFASGSRIIITTRD-RQV 332 (538)
Q Consensus 261 ~~~l~~~l~~~---~~~-~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~iiiTtR~-~~~ 332 (538)
.......+... ... ...+.++...+... ..++.-++|||+++.. ....+++..+.....+..+|++|.. ..+
T Consensus 85 ~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI 164 (484)
T PRK14956 85 TKGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKI 164 (484)
T ss_pred HccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhc
Confidence 00000000000 000 01111122222111 2345669999999744 5677777776654455655555543 333
Q ss_pred hhhc-CCCeeEEcCCCCHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhcCCcH
Q 009306 333 LANC-GVDEVYQMEELVHDDALRLFSRHAFGGDHPHESHTELACKTIKYARGVPL 386 (538)
Q Consensus 333 ~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PL 386 (538)
...+ .....|.+.+++.++..+.+...+.. .......+....|++.++|.+.
T Consensus 165 ~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~--Egi~~e~eAL~~Ia~~S~Gd~R 217 (484)
T PRK14956 165 PETILSRCQDFIFKKVPLSVLQDYSEKLCKI--ENVQYDQEGLFWIAKKGDGSVR 217 (484)
T ss_pred cHHHHhhhheeeecCCCHHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHcCChHH
Confidence 3222 22357999999999999998887632 2234457788999999999984
No 47
>PRK05642 DNA replication initiation factor; Validated
Probab=98.71 E-value=4.3e-07 Score=86.09 Aligned_cols=154 Identities=19% Similarity=0.194 Sum_probs=93.7
Q ss_pred ceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhhcCChHHHHHHHHHHHhcCCCCCCchhhcHHHHHHHhc
Q 009306 211 VYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEETCRLGDLRQQLLSTLLNDGNVKNFLNTDLNFQSRRLT 290 (538)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~ 290 (538)
...+.|+|++|+|||+|++++++.+......++|+.. .+ +... ...+.+.+.
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~-~~---------~~~~------------------~~~~~~~~~ 96 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPL-AE---------LLDR------------------GPELLDNLE 96 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeH-HH---------HHhh------------------hHHHHHhhh
Confidence 3568999999999999999999877655445666651 11 1110 011222232
Q ss_pred CCCeEEEEecCCCh---HHH-HHHhcCcCC-CCCCCEEEEeccchh-h--------hhhcCCCeeEEcCCCCHHHHHHHH
Q 009306 291 RKKVLIVFDDVDHP---RQI-KILVGRLDL-FASGSRIIITTRDRQ-V--------LANCGVDEVYQMEELVHDDALRLF 356 (538)
Q Consensus 291 ~k~~LlVlDdv~~~---~~~-~~l~~~l~~-~~~~~~iiiTtR~~~-~--------~~~~~~~~~~~l~~L~~~ea~~Lf 356 (538)
+-. +|||||++.. ..+ +.+...+.. ...|..+|+|++... - .+.+....++++++++.++-.+++
T Consensus 97 ~~d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il 175 (234)
T PRK05642 97 QYE-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRAL 175 (234)
T ss_pred hCC-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHH
Confidence 222 7889999522 222 223322221 134677888887531 1 122223467899999999999999
Q ss_pred HhhhcCCCCCCCchHHHHHHHHHHhcCCcHHHHHHHHHh
Q 009306 357 SRHAFGGDHPHESHTELACKTIKYARGVPLALEVLGRYL 395 (538)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~L 395 (538)
..++... .-...++...-+++.+.|..-.+..+-..|
T Consensus 176 ~~ka~~~--~~~l~~ev~~~L~~~~~~d~r~l~~~l~~l 212 (234)
T PRK05642 176 QLRASRR--GLHLTDEVGHFILTRGTRSMSALFDLLERL 212 (234)
T ss_pred HHHHHHc--CCCCCHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 8666322 233457788888888888876665555544
No 48
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.71 E-value=7.8e-07 Score=92.45 Aligned_cols=198 Identities=17% Similarity=0.109 Sum_probs=110.3
Q ss_pred CCCCCCceeccchhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhccce---eeEEEEee-hhhhhh--cCCh
Q 009306 184 HSENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHF---SGSYFARN-VREAEE--TCRL 257 (538)
Q Consensus 184 ~~~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f---~~~~~~~~-~~~~~~--~~~~ 257 (538)
|..-..++|.+...+.|...+..+. -...+.++|++|+||||+|+.++..+...- ...|..+. +..... ...+
T Consensus 10 P~~~~divGq~~i~~~L~~~i~~~~-l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv 88 (472)
T PRK14962 10 PKTFSEVVGQDHVKKLIINALKKNS-ISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDV 88 (472)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCcc
Confidence 3445789999988888888776432 235689999999999999999998753210 00000000 000000 0000
Q ss_pred HHHHHHHHHHHhcCCCCCCchhhcHHHHHHH-----hcCCCeEEEEecCCCh--HHHHHHhcCcCCCCCCCEEEEeccc-
Q 009306 258 GDLRQQLLSTLLNDGNVKNFLNTDLNFQSRR-----LTRKKVLIVFDDVDHP--RQIKILVGRLDLFASGSRIIITTRD- 329 (538)
Q Consensus 258 ~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~iiiTtR~- 329 (538)
.. +... .....+... .+.+. ..+++-++|+|+++.. .....++..+...+....+|++|.+
T Consensus 89 ~e--------l~aa--~~~gid~iR-~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn~ 157 (472)
T PRK14962 89 IE--------LDAA--SNRGIDEIR-KIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNL 157 (472)
T ss_pred EE--------EeCc--ccCCHHHHH-HHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCCh
Confidence 00 0000 000011111 11111 1245569999999754 3456666665543444555544443
Q ss_pred hhhhhhc-CCCeeEEcCCCCHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhcCC-cHHHHHHHHHh
Q 009306 330 RQVLANC-GVDEVYQMEELVHDDALRLFSRHAFGGDHPHESHTELACKTIKYARGV-PLALEVLGRYL 395 (538)
Q Consensus 330 ~~~~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~-PLal~~~~~~L 395 (538)
..+...+ .....+++.+++.++....+...+.. .......+....|++.++|. ..++..+-.+.
T Consensus 158 ~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~--egi~i~~eal~~Ia~~s~GdlR~aln~Le~l~ 223 (472)
T PRK14962 158 EKVPPTIISRCQVIEFRNISDELIIKRLQEVAEA--EGIEIDREALSFIAKRASGGLRDALTMLEQVW 223 (472)
T ss_pred HhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 2332222 23468899999999999998887632 22244567788899888655 56766665543
No 49
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.71 E-value=8.1e-07 Score=91.97 Aligned_cols=180 Identities=16% Similarity=0.162 Sum_probs=112.2
Q ss_pred CCCCCCceeccchhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhccce---------------------eeE
Q 009306 184 HSENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHF---------------------SGS 242 (538)
Q Consensus 184 ~~~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f---------------------~~~ 242 (538)
|....++||.+..++.|...+..+. -.+.+.++|+.|+||||+|+.++..+-..+ ..+
T Consensus 9 P~~f~dliGQe~vv~~L~~a~~~~r-i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv 87 (491)
T PRK14964 9 PSSFKDLVGQDVLVRILRNAFTLNK-IPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDV 87 (491)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCE
Confidence 3445789999999999988886542 245789999999999999999987542211 111
Q ss_pred EEEeehhhhhhcCChHHHHHHHHHHHhcCCCCCCchhhcHHHHHHH-hcCCCeEEEEecCCCh--HHHHHHhcCcCCCCC
Q 009306 243 YFARNVREAEETCRLGDLRQQLLSTLLNDGNVKNFLNTDLNFQSRR-LTRKKVLIVFDDVDHP--RQIKILVGRLDLFAS 319 (538)
Q Consensus 243 ~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~ 319 (538)
+.+. .....+... .+.+... .... ..++.-++|+|+++.. .....++..+....+
T Consensus 88 ~eid----aas~~~vdd-IR~Iie~-----------------~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~ 145 (491)
T PRK14964 88 IEID----AASNTSVDD-IKVILEN-----------------SCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAP 145 (491)
T ss_pred EEEe----cccCCCHHH-HHHHHHH-----------------HHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCC
Confidence 1111 000111111 1111111 1000 1234558999999644 456777777766566
Q ss_pred CCEEEEeccc-hhhhhhc-CCCeeEEcCCCCHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhcCCcHHH
Q 009306 320 GSRIIITTRD-RQVLANC-GVDEVYQMEELVHDDALRLFSRHAFGGDHPHESHTELACKTIKYARGVPLAL 388 (538)
Q Consensus 320 ~~~iiiTtR~-~~~~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal 388 (538)
+..+|++|.+ ..+...+ .....+++.+++.++..+.+...+.. .......+.+..|++.++|.+..+
T Consensus 146 ~v~fIlatte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~--Egi~i~~eAL~lIa~~s~GslR~a 214 (491)
T PRK14964 146 HVKFILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKK--ENIEHDEESLKLIAENSSGSMRNA 214 (491)
T ss_pred CeEEEEEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHcCCCHHHH
Confidence 7777766643 3333222 23467899999999999999887732 233455777889999999988533
No 50
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.70 E-value=9.6e-07 Score=92.15 Aligned_cols=192 Identities=15% Similarity=0.106 Sum_probs=112.2
Q ss_pred CCCCCCceeccchhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhcccee-------eEEEEee-hhhhhh--
Q 009306 184 HSENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFS-------GSYFARN-VREAEE-- 253 (538)
Q Consensus 184 ~~~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~-------~~~~~~~-~~~~~~-- 253 (538)
|....+++|.+..++.|...+..+. -.+.+.++|++|+||||+|+.+++.+-.... ..|..+. +.....
T Consensus 17 P~~f~dliGq~~vv~~L~~ai~~~r-i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~ 95 (507)
T PRK06645 17 PSNFAELQGQEVLVKVLSYTILNDR-LAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHN 95 (507)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCC
Confidence 3445778999999999988776432 3457899999999999999999987643210 0111110 000000
Q ss_pred cCChHHHHHHHHHHHhcCCCCCCchhhcHHHHHHH----hcCCCeEEEEecCCCh--HHHHHHhcCcCCCCCCCEEEEec
Q 009306 254 TCRLGDLRQQLLSTLLNDGNVKNFLNTDLNFQSRR----LTRKKVLIVFDDVDHP--RQIKILVGRLDLFASGSRIIITT 327 (538)
Q Consensus 254 ~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~iiiTt 327 (538)
...+.. +... .....++....+... ..+++-++|||+++.. ..+..++..+....+.+.+|++|
T Consensus 96 h~Dv~e--------idaa--s~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aT 165 (507)
T PRK06645 96 HPDIIE--------IDAA--SKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFAT 165 (507)
T ss_pred CCcEEE--------eecc--CCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEe
Confidence 000000 0000 001112221111111 2345668999999754 45677776665545566655444
Q ss_pred -cchhhhhhc-CCCeeEEcCCCCHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhcCCcHHH
Q 009306 328 -RDRQVLANC-GVDEVYQMEELVHDDALRLFSRHAFGGDHPHESHTELACKTIKYARGVPLAL 388 (538)
Q Consensus 328 -R~~~~~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal 388 (538)
+...+...+ .....+++.+++.++..+.+...+... ......+....|++.++|.+.-+
T Consensus 166 te~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~e--gi~ie~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 166 TEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQE--NLKTDIEALRIIAYKSEGSARDA 226 (507)
T ss_pred CChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHcCCCHHHH
Confidence 444443333 234678999999999999999887322 23345677788999999987443
No 51
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.70 E-value=3.5e-08 Score=90.14 Aligned_cols=50 Identities=24% Similarity=0.413 Sum_probs=35.6
Q ss_pred CceeccchhHHHHHhhhc-CCCCceEEEEeccCCCchhHHHHHHHHhhccc
Q 009306 189 DLVGVRLPMKEIESLLRT-GSTNVYKLGIWGIGGIGKTTIAGAIFNKISRH 238 (538)
Q Consensus 189 ~~vGR~~~l~~l~~~L~~-~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 238 (538)
.|+||+.++++|...|.. .....+.+.|+|++|+|||+|.++++.++...
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 489999999999999942 33457889999999999999999999987776
No 52
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.70 E-value=5.1e-07 Score=85.68 Aligned_cols=155 Identities=13% Similarity=0.157 Sum_probs=93.3
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhhcCChHHHHHHHHHHHhcCCCCCCchhhcHHHHHHHh
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEETCRLGDLRQQLLSTLLNDGNVKNFLNTDLNFQSRRL 289 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~~l 289 (538)
..+.+.|+|++|+|||+|+..+++........+.|+.. ... . ..... +.+.+
T Consensus 44 ~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~-~~~---~---~~~~~---------------------~~~~~ 95 (235)
T PRK08084 44 HSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPL-DKR---A---WFVPE---------------------VLEGM 95 (235)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEH-HHH---h---hhhHH---------------------HHHHh
Confidence 34579999999999999999999876654444555541 110 0 00000 11111
Q ss_pred cCCCeEEEEecCCCh---HHH-HHHhcCcCCC-CCC-CEEEEeccch---------hhhhhcCCCeeEEcCCCCHHHHHH
Q 009306 290 TRKKVLIVFDDVDHP---RQI-KILVGRLDLF-ASG-SRIIITTRDR---------QVLANCGVDEVYQMEELVHDDALR 354 (538)
Q Consensus 290 ~~k~~LlVlDdv~~~---~~~-~~l~~~l~~~-~~~-~~iiiTtR~~---------~~~~~~~~~~~~~l~~L~~~ea~~ 354 (538)
.. --+|+|||++.. ..+ +.+...+... ..| .++|+||+.. .+...+....++++++++.++-.+
T Consensus 96 ~~-~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~ 174 (235)
T PRK08084 96 EQ-LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQ 174 (235)
T ss_pred hh-CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHH
Confidence 11 248899999542 222 1222211110 123 4789998754 222333445689999999999999
Q ss_pred HHHhhhcCCCCCCCchHHHHHHHHHHhcCCcHHHHHHHHHh
Q 009306 355 LFSRHAFGGDHPHESHTELACKTIKYARGVPLALEVLGRYL 395 (538)
Q Consensus 355 Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~L 395 (538)
++.+++.. ..-...++...-+++.+.|..-.+..+...+
T Consensus 175 ~l~~~a~~--~~~~l~~~v~~~L~~~~~~d~r~l~~~l~~l 213 (235)
T PRK08084 175 ALQLRARL--RGFELPEDVGRFLLKRLDREMRTLFMTLDQL 213 (235)
T ss_pred HHHHHHHH--cCCCCCHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 99886622 2244567888889999988876655544433
No 53
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.69 E-value=5.5e-07 Score=95.72 Aligned_cols=196 Identities=14% Similarity=0.085 Sum_probs=111.5
Q ss_pred CCCCCCceeccchhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhccceee---EEEEe-ehhhhhhcCChHH
Q 009306 184 HSENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSG---SYFAR-NVREAEETCRLGD 259 (538)
Q Consensus 184 ~~~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~---~~~~~-~~~~~~~~~~~~~ 259 (538)
|.....++|.+..++.|..++..+. -...+.++|+.|+||||+|+.++..+-..... .|-.+ .+....... ..+
T Consensus 12 P~tFddIIGQe~vv~~L~~ai~~~r-l~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~-~~D 89 (709)
T PRK08691 12 PKTFADLVGQEHVVKALQNALDEGR-LHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGR-YVD 89 (709)
T ss_pred CCCHHHHcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccC-ccc
Confidence 3445789999999999999987532 24568999999999999999999865322100 00000 000000000 000
Q ss_pred HHHHHHHHHhcCCCCCCchhhcHHHHHH---H-hcCCCeEEEEecCCChH--HHHHHhcCcCCCCCCCEEEEeccch-hh
Q 009306 260 LRQQLLSTLLNDGNVKNFLNTDLNFQSR---R-LTRKKVLIVFDDVDHPR--QIKILVGRLDLFASGSRIIITTRDR-QV 332 (538)
Q Consensus 260 l~~~l~~~l~~~~~~~~~~~~~~~~l~~---~-l~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~~~~iiiTtR~~-~~ 332 (538)
++ .+... .....+...+.+.. . ..+++-++|||+++... ....|+..+......+.+|++|.+. .+
T Consensus 90 vl-----EidaA--s~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL 162 (709)
T PRK08691 90 LL-----EIDAA--SNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKV 162 (709)
T ss_pred eE-----EEecc--ccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCcccc
Confidence 00 00000 00111111111111 0 12455699999997543 3555666555445567777776544 22
Q ss_pred hhhc-CCCeeEEcCCCCHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhcCCcHHHHH
Q 009306 333 LANC-GVDEVYQMEELVHDDALRLFSRHAFGGDHPHESHTELACKTIKYARGVPLALEV 390 (538)
Q Consensus 333 ~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~ 390 (538)
...+ .....+.+.+++.++..+.+.+.+-. .......+.+..|++.++|.+.-+..
T Consensus 163 ~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~k--Egi~id~eAL~~Ia~~A~GslRdAln 219 (709)
T PRK08691 163 PVTVLSRCLQFVLRNMTAQQVADHLAHVLDS--EKIAYEPPALQLLGRAAAGSMRDALS 219 (709)
T ss_pred chHHHHHHhhhhcCCCCHHHHHHHHHHHHHH--cCCCcCHHHHHHHHHHhCCCHHHHHH
Confidence 2111 22246788999999999999887732 22334567788999999999854433
No 54
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.68 E-value=9e-07 Score=92.98 Aligned_cols=182 Identities=14% Similarity=0.101 Sum_probs=110.4
Q ss_pred CCCCCCceeccchhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhccce---------------------eeE
Q 009306 184 HSENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHF---------------------SGS 242 (538)
Q Consensus 184 ~~~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f---------------------~~~ 242 (538)
|....++||-+..++.|..++..+. -...+.++|++|+||||+|+.+++.+-..- +..
T Consensus 12 P~~f~divGq~~v~~~L~~~~~~~~-l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~ 90 (509)
T PRK14958 12 PRCFQEVIGQAPVVRALSNALDQQY-LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDL 90 (509)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHhCC-CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceE
Confidence 3445789999999999999997532 245678999999999999999998653210 111
Q ss_pred EEEeehhhhhhcCChHHHHHHHHHHHhcCCCCCCchhhcHHHHHHHhcCCCeEEEEecCCCh--HHHHHHhcCcCCCCCC
Q 009306 243 YFARNVREAEETCRLGDLRQQLLSTLLNDGNVKNFLNTDLNFQSRRLTRKKVLIVFDDVDHP--RQIKILVGRLDLFASG 320 (538)
Q Consensus 243 ~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~ 320 (538)
+.+. ......+..+ +.++..+.. .-..++.-++|||+++.. .....++..+....++
T Consensus 91 ~eid----aas~~~v~~i-R~l~~~~~~----------------~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~ 149 (509)
T PRK14958 91 FEVD----AASRTKVEDT-RELLDNIPY----------------APTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSH 149 (509)
T ss_pred EEEc----ccccCCHHHH-HHHHHHHhh----------------ccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCC
Confidence 1111 0001111111 111111110 001234568999999753 5566777766655667
Q ss_pred CEEEEeccch-hhhhhc-CCCeeEEcCCCCHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhcCCcHHHH
Q 009306 321 SRIIITTRDR-QVLANC-GVDEVYQMEELVHDDALRLFSRHAFGGDHPHESHTELACKTIKYARGVPLALE 389 (538)
Q Consensus 321 ~~iiiTtR~~-~~~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~ 389 (538)
+++|++|.+. .+...+ .....+++.+++.++....+...+-.. ......+....+++.++|.+.-+.
T Consensus 150 ~~fIlattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~e--gi~~~~~al~~ia~~s~GslR~al 218 (509)
T PRK14958 150 VKFILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEE--NVEFENAALDLLARAANGSVRDAL 218 (509)
T ss_pred eEEEEEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHcCCcHHHHH
Confidence 7777665443 222221 223578899999999888777665222 223446677889999999885443
No 55
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.68 E-value=4.5e-06 Score=83.54 Aligned_cols=195 Identities=17% Similarity=0.151 Sum_probs=114.0
Q ss_pred CCCCCCceeccchhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhccc----eeeEEEEeehhhhhhcCChHH
Q 009306 184 HSENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRH----FSGSYFARNVREAEETCRLGD 259 (538)
Q Consensus 184 ~~~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~----f~~~~~~~~~~~~~~~~~~~~ 259 (538)
|.....++|.+...+.|...+..+. -...+.|+|+.|+||||+|..++..+-.. +....... ...--.
T Consensus 19 P~~~~~l~Gh~~a~~~L~~a~~~gr-l~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~-------~~~~c~ 90 (351)
T PRK09112 19 PSENTRLFGHEEAEAFLAQAYREGK-LHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLAD-------PDPASP 90 (351)
T ss_pred CCchhhccCcHHHHHHHHHHHHcCC-CCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCC-------CCCCCH
Confidence 3456789999999999999887542 34568999999999999999999876442 11000000 000000
Q ss_pred HHHHHHHH-------Hhc---CCC----CCCchhhcHHHHHHHh-----cCCCeEEEEecCCCh--HHHHHHhcCcCCCC
Q 009306 260 LRQQLLST-------LLN---DGN----VKNFLNTDLNFQSRRL-----TRKKVLIVFDDVDHP--RQIKILVGRLDLFA 318 (538)
Q Consensus 260 l~~~l~~~-------l~~---~~~----~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~ 318 (538)
..+.+... +.. ... ....+++.. .+.+.+ .++.-++|||+++.. .....++..+....
T Consensus 91 ~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR-~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp 169 (351)
T PRK09112 91 VWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIR-RVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPP 169 (351)
T ss_pred HHHHHHcCCCCCEEEeecccccccccccccCCHHHHH-HHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCC
Confidence 11111111 000 000 001122221 222222 245669999999743 45666766665544
Q ss_pred CCCEEEEeccch-hhhhhc-CCCeeEEcCCCCHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhcCCcHHHHHH
Q 009306 319 SGSRIIITTRDR-QVLANC-GVDEVYQMEELVHDDALRLFSRHAFGGDHPHESHTELACKTIKYARGVPLALEVL 391 (538)
Q Consensus 319 ~~~~iiiTtR~~-~~~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~ 391 (538)
.+..+|++|... .+++.. .....+.+.+++.++..+++...... .. ...+.+..+++.++|.|.....+
T Consensus 170 ~~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~---~~-~~~~~~~~i~~~s~G~pr~Al~l 240 (351)
T PRK09112 170 ARALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSS---QG-SDGEITEALLQRSKGSVRKALLL 240 (351)
T ss_pred CCceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcc---cC-CCHHHHHHHHHHcCCCHHHHHHH
Confidence 555555555433 333332 22358999999999999999874311 11 33566788999999999755433
No 56
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.67 E-value=9e-07 Score=89.79 Aligned_cols=169 Identities=14% Similarity=0.099 Sum_probs=105.2
Q ss_pred CCceeccchhHHHHHhhhcCCC--------CceEEEEeccCCCchhHHHHHHHHhhccce--------------------
Q 009306 188 EDLVGVRLPMKEIESLLRTGST--------NVYKLGIWGIGGIGKTTIAGAIFNKISRHF-------------------- 239 (538)
Q Consensus 188 ~~~vGR~~~l~~l~~~L~~~~~--------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f-------------------- 239 (538)
+.++|.+..++.|...+..+.. -.+.+.++|++|+|||++|+.++..+-...
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~h 84 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTH 84 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 4688999989999888875421 246688999999999999999988653321
Q ss_pred eeEEEEeehhhhhhcCChHHHHHHHHHHHhcCCCCCCchhhcHHHHHHHh-----cCCCeEEEEecCCCh--HHHHHHhc
Q 009306 240 SGSYFARNVREAEETCRLGDLRQQLLSTLLNDGNVKNFLNTDLNFQSRRL-----TRKKVLIVFDDVDHP--RQIKILVG 312 (538)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~l~~ 312 (538)
+...++.. . .....+++.. .+.+.+ .+++-++|||+++.. .....++.
T Consensus 85 pD~~~i~~---~---------------------~~~i~i~~iR-~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk 139 (394)
T PRK07940 85 PDVRVVAP---E---------------------GLSIGVDEVR-ELVTIAARRPSTGRWRIVVIEDADRLTERAANALLK 139 (394)
T ss_pred CCEEEecc---c---------------------cccCCHHHHH-HHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHH
Confidence 11111110 0 0001111111 111111 234458889999754 44556666
Q ss_pred CcCCCCCCCEEEEeccch-hhhhhc-CCCeeEEcCCCCHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhcCCcHHH
Q 009306 313 RLDLFASGSRIIITTRDR-QVLANC-GVDEVYQMEELVHDDALRLFSRHAFGGDHPHESHTELACKTIKYARGVPLAL 388 (538)
Q Consensus 313 ~l~~~~~~~~iiiTtR~~-~~~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal 388 (538)
.+....++..+|++|.+. .+.+.+ .....+.+++++.++..+.+.... ....+.+..++..++|.|...
T Consensus 140 ~LEep~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~-------~~~~~~a~~la~~s~G~~~~A 210 (394)
T PRK07940 140 AVEEPPPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRD-------GVDPETARRAARASQGHIGRA 210 (394)
T ss_pred HhhcCCCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhc-------CCCHHHHHHHHHHcCCCHHHH
Confidence 665545667666666554 444332 234689999999999999887543 122456788999999999643
No 57
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.67 E-value=2.9e-07 Score=93.58 Aligned_cols=174 Identities=17% Similarity=0.212 Sum_probs=101.2
Q ss_pred CCCCceeccchhHHHHHhhhc-----------CCCCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhhc
Q 009306 186 ENEDLVGVRLPMKEIESLLRT-----------GSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEET 254 (538)
Q Consensus 186 ~~~~~vGR~~~l~~l~~~L~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~ 254 (538)
...++.|++.++++|.+.+.. +....+-+.|+|++|+|||+||+.+++.....|-.. .
T Consensus 120 ~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v---~-------- 188 (364)
T TIGR01242 120 SYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRV---V-------- 188 (364)
T ss_pred CHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEec---c--------
Confidence 345789999999999886642 112245699999999999999999999876553211 1
Q ss_pred CChHHHHHHHHHHHhcCCCCCCchhhcHHHHHH-HhcCCCeEEEEecCCChH----------------HHHHHhcCcCCC
Q 009306 255 CRLGDLRQQLLSTLLNDGNVKNFLNTDLNFQSR-RLTRKKVLIVFDDVDHPR----------------QIKILVGRLDLF 317 (538)
Q Consensus 255 ~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~----------------~~~~l~~~l~~~ 317 (538)
...+....... .......+.+ .-...+.+|+|||++... .+..++..+..+
T Consensus 189 --~~~l~~~~~g~----------~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~ 256 (364)
T TIGR01242 189 --GSELVRKYIGE----------GARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGF 256 (364)
T ss_pred --hHHHHHHhhhH----------HHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCC
Confidence 00111110000 0011111111 123467899999986431 122233222221
Q ss_pred --CCCCEEEEeccchhhh-----hhcCCCeeEEcCCCCHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhcCCc
Q 009306 318 --ASGSRIIITTRDRQVL-----ANCGVDEVYQMEELVHDDALRLFSRHAFGGDHPHESHTELACKTIKYARGVP 385 (538)
Q Consensus 318 --~~~~~iiiTtR~~~~~-----~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 385 (538)
..+..||.||.....+ ........+.++..+.++..++|..+..+...... .....+++.+.|..
T Consensus 257 ~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~---~~~~~la~~t~g~s 328 (364)
T TIGR01242 257 DPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAED---VDLEAIAKMTEGAS 328 (364)
T ss_pred CCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCcc---CCHHHHHHHcCCCC
Confidence 2466788888754322 11133567899999999999999988744332221 12456777777764
No 58
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.67 E-value=1.4e-06 Score=92.75 Aligned_cols=194 Identities=12% Similarity=0.112 Sum_probs=111.7
Q ss_pred CCCCCceeccchhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhccce----eeE----EEEe-ehhhhhhcC
Q 009306 185 SENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHF----SGS----YFAR-NVREAEETC 255 (538)
Q Consensus 185 ~~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f----~~~----~~~~-~~~~~~~~~ 255 (538)
...+++||-+..++.|..++..+. -...+.++|+.|+||||+|+.+++.+-..- .+. |-.+ .+.......
T Consensus 13 ~~f~dviGQe~vv~~L~~~l~~~r-l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C~~i~~g~ 91 (618)
T PRK14951 13 RSFSEMVGQEHVVQALTNALTQQR-LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQACRDIDSGR 91 (618)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHHHHHHcCC
Confidence 445789999999999999887542 345679999999999999999988653210 000 0000 000000000
Q ss_pred ChHHHHHHHHHHHhcCCCCCCchhhcHHHHHHHh-----cCCCeEEEEecCCCh--HHHHHHhcCcCCCCCCCEEEEecc
Q 009306 256 RLGDLRQQLLSTLLNDGNVKNFLNTDLNFQSRRL-----TRKKVLIVFDDVDHP--RQIKILVGRLDLFASGSRIIITTR 328 (538)
Q Consensus 256 ~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~iiiTtR 328 (538)
.. ++. .+... ....+++..+.+ +.. .++.-++|||+++.. .....++..+.....+..+|++|.
T Consensus 92 h~-D~~-----eldaa--s~~~Vd~iReli-~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Tt 162 (618)
T PRK14951 92 FV-DYT-----ELDAA--SNRGVDEVQQLL-EQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATT 162 (618)
T ss_pred CC-cee-----ecCcc--cccCHHHHHHHH-HHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEEC
Confidence 00 000 00000 001111211111 111 234458999999754 456777777665556666666654
Q ss_pred c-hhhhhh-cCCCeeEEcCCCCHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhcCCcHHHHH
Q 009306 329 D-RQVLAN-CGVDEVYQMEELVHDDALRLFSRHAFGGDHPHESHTELACKTIKYARGVPLALEV 390 (538)
Q Consensus 329 ~-~~~~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~ 390 (538)
+ ..+... ......+++++++.++..+.+.+.+.. .......+....|++.++|.+.-+..
T Consensus 163 d~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~--egi~ie~~AL~~La~~s~GslR~al~ 224 (618)
T PRK14951 163 DPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAA--ENVPAEPQALRLLARAARGSMRDALS 224 (618)
T ss_pred CchhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHcCCCHHHHHH
Confidence 3 333322 223468999999999999999877622 22234567788999999998754433
No 59
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.67 E-value=1.1e-06 Score=89.36 Aligned_cols=184 Identities=14% Similarity=0.117 Sum_probs=112.2
Q ss_pred CCCCCceeccchhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhccc----ee-----------------eEE
Q 009306 185 SENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRH----FS-----------------GSY 243 (538)
Q Consensus 185 ~~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~----f~-----------------~~~ 243 (538)
..-..++|.+..++.|...+..+. -.+.+.++|++|+||||+|+.++..+... +. ...
T Consensus 11 ~~~~~iig~~~~~~~l~~~~~~~~-~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~~ 89 (355)
T TIGR02397 11 QTFEDVIGQEHIVQTLKNAIKNGR-IAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDVI 89 (355)
T ss_pred CcHhhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCEE
Confidence 344678999999999999887532 34578899999999999999999875422 10 011
Q ss_pred EEeehhhhhhcCChHHHHHHHHHHHhcCCCCCCchhhcHHHHHHHhcCCCeEEEEecCCCh--HHHHHHhcCcCCCCCCC
Q 009306 244 FARNVREAEETCRLGDLRQQLLSTLLNDGNVKNFLNTDLNFQSRRLTRKKVLIVFDDVDHP--RQIKILVGRLDLFASGS 321 (538)
Q Consensus 244 ~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~ 321 (538)
++.. ...... ...+.+...+... -..+++-++|+|+++.. .....++..+....+.+
T Consensus 90 ~~~~----~~~~~~-~~~~~l~~~~~~~----------------p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~ 148 (355)
T TIGR02397 90 EIDA----ASNNGV-DDIREILDNVKYA----------------PSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHV 148 (355)
T ss_pred Eeec----cccCCH-HHHHHHHHHHhcC----------------cccCCceEEEEeChhhcCHHHHHHHHHHHhCCccce
Confidence 1110 000000 0011111111100 01234458999999754 44566666665445566
Q ss_pred EEEEeccchh-hhhhc-CCCeeEEcCCCCHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhcCCcHHHHHHH
Q 009306 322 RIIITTRDRQ-VLANC-GVDEVYQMEELVHDDALRLFSRHAFGGDHPHESHTELACKTIKYARGVPLALEVLG 392 (538)
Q Consensus 322 ~iiiTtR~~~-~~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~ 392 (538)
.+|++|.+.. +...+ .....+++.+++.++..+++...+-.. ......+.+..+++.++|.|..+....
T Consensus 149 ~lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~--g~~i~~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 149 VFILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKE--GIKIEDEALELIARAADGSLRDALSLL 219 (355)
T ss_pred eEEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHcCCChHHHHHHH
Confidence 6666665443 22222 223578899999999999998876322 223446788899999999996655444
No 60
>PF13173 AAA_14: AAA domain
Probab=98.64 E-value=2.5e-07 Score=78.98 Aligned_cols=119 Identities=15% Similarity=0.099 Sum_probs=73.8
Q ss_pred eEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhhcCChHHHHHHHHHHHhcCCCCCCchhhcHHHHHHHhcC
Q 009306 212 YKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEETCRLGDLRQQLLSTLLNDGNVKNFLNTDLNFQSRRLTR 291 (538)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~ 291 (538)
+++.|.|+.|+|||||+++++.... .-...+++....... .... ..+ ....+.+....
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi~~~~~~~-----~~~~---------------~~~-~~~~~~~~~~~ 60 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL-PPENILYINFDDPRD-----RRLA---------------DPD-LLEYFLELIKP 60 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc-ccccceeeccCCHHH-----HHHh---------------hhh-hHHHHHHhhcc
Confidence 5789999999999999999998765 222344443111100 0000 000 12222333334
Q ss_pred CCeEEEEecCCChHHHHHHhcCcCCCCCCCEEEEeccchhhhhhc------CCCeeEEcCCCCHHHH
Q 009306 292 KKVLIVFDDVDHPRQIKILVGRLDLFASGSRIIITTRDRQVLANC------GVDEVYQMEELVHDDA 352 (538)
Q Consensus 292 k~~LlVlDdv~~~~~~~~l~~~l~~~~~~~~iiiTtR~~~~~~~~------~~~~~~~l~~L~~~ea 352 (538)
++.+|+||++.....|...+..+....++.+|++|+.....+..- +....+++.||+..|-
T Consensus 61 ~~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 61 GKKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred CCcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 678999999987776666665554445678999999887655321 2234689999998774
No 61
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.63 E-value=1.3e-06 Score=91.69 Aligned_cols=196 Identities=13% Similarity=0.078 Sum_probs=112.1
Q ss_pred CCCCCceeccchhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhcccee---eEEEEe-ehhhhhh--cCChH
Q 009306 185 SENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFS---GSYFAR-NVREAEE--TCRLG 258 (538)
Q Consensus 185 ~~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~---~~~~~~-~~~~~~~--~~~~~ 258 (538)
.....++|.+..++.|...+..+ .-...+.++|+.|+||||+|+.++..+..... ..|-.+ .+..... ..++.
T Consensus 13 ~~f~diiGq~~~v~~L~~~i~~~-rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dli 91 (546)
T PRK14957 13 QSFAEVAGQQHALNSLVHALETQ-KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLI 91 (546)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceE
Confidence 34478899999999999888753 23456789999999999999999986542110 000000 0000000 00000
Q ss_pred HHHHHHHHHHhcCCCCC-CchhhcHHHHHHH-hcCCCeEEEEecCCC--hHHHHHHhcCcCCCCCCCEEEEeccc-hhhh
Q 009306 259 DLRQQLLSTLLNDGNVK-NFLNTDLNFQSRR-LTRKKVLIVFDDVDH--PRQIKILVGRLDLFASGSRIIITTRD-RQVL 333 (538)
Q Consensus 259 ~l~~~l~~~l~~~~~~~-~~~~~~~~~l~~~-l~~k~~LlVlDdv~~--~~~~~~l~~~l~~~~~~~~iiiTtR~-~~~~ 333 (538)
.+ ....... .........+... ..+++-++|||+++. ......++..+......+.+|++|.+ ..+.
T Consensus 92 ei--------daas~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Ttd~~kil 163 (546)
T PRK14957 92 EI--------DAASRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIP 163 (546)
T ss_pred Ee--------ecccccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEECChhhhh
Confidence 00 0000000 1111111111111 234566999999974 35567777776655566666655543 3333
Q ss_pred hh-cCCCeeEEcCCCCHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhcCCcH-HHHHH
Q 009306 334 AN-CGVDEVYQMEELVHDDALRLFSRHAFGGDHPHESHTELACKTIKYARGVPL-ALEVL 391 (538)
Q Consensus 334 ~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PL-al~~~ 391 (538)
.. ......+++.+++.++..+.+...+-.. ...........+++.++|.+. ++..+
T Consensus 164 ~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~e--gi~~e~~Al~~Ia~~s~GdlR~alnlL 221 (546)
T PRK14957 164 VTILSRCIQLHLKHISQADIKDQLKIILAKE--NINSDEQSLEYIAYHAKGSLRDALSLL 221 (546)
T ss_pred hhHHHheeeEEeCCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 22 2234689999999999998888765221 234456777889999999774 44444
No 62
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.63 E-value=5.8e-07 Score=95.84 Aligned_cols=194 Identities=14% Similarity=0.096 Sum_probs=112.9
Q ss_pred CCCCCCceeccchhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhcccee---eEEEEe-ehhhhhh--cCCh
Q 009306 184 HSENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFS---GSYFAR-NVREAEE--TCRL 257 (538)
Q Consensus 184 ~~~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~---~~~~~~-~~~~~~~--~~~~ 257 (538)
|.....+||.+..++.|...+..+. -...+.++|+.|+||||+|+.++..+-.... ..|-.+ .+..... ..++
T Consensus 12 P~~f~divGQe~vv~~L~~~l~~~r-l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~g~~~D~ 90 (647)
T PRK07994 12 PQTFAEVVGQEHVLTALANALDLGR-LHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQGRFVDL 90 (647)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHcCCCCCc
Confidence 3445789999999999998887542 2455789999999999999999987543210 000000 0000000 0000
Q ss_pred HHHHHHHHHHHhcCCCCC-CchhhcHHHHHH-HhcCCCeEEEEecCCC--hHHHHHHhcCcCCCCCCCEEEEeccch-hh
Q 009306 258 GDLRQQLLSTLLNDGNVK-NFLNTDLNFQSR-RLTRKKVLIVFDDVDH--PRQIKILVGRLDLFASGSRIIITTRDR-QV 332 (538)
Q Consensus 258 ~~l~~~l~~~l~~~~~~~-~~~~~~~~~l~~-~l~~k~~LlVlDdv~~--~~~~~~l~~~l~~~~~~~~iiiTtR~~-~~ 332 (538)
.. +....... ..+.++...+.. -..++.-++|||+++. ......|+..+.....+.++|++|.+. .+
T Consensus 91 ie--------idaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kL 162 (647)
T PRK07994 91 IE--------IDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 162 (647)
T ss_pred ee--------ecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCcccc
Confidence 00 00000000 111111111111 1234566999999974 456777777776556677766665544 33
Q ss_pred hhhc-CCCeeEEcCCCCHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhcCCcHHH
Q 009306 333 LANC-GVDEVYQMEELVHDDALRLFSRHAFGGDHPHESHTELACKTIKYARGVPLAL 388 (538)
Q Consensus 333 ~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal 388 (538)
...+ .....+.+.+++.++..+.+...+-.. ......+....|++.++|.+.-.
T Consensus 163 l~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e--~i~~e~~aL~~Ia~~s~Gs~R~A 217 (647)
T PRK07994 163 PVTILSRCLQFHLKALDVEQIRQQLEHILQAE--QIPFEPRALQLLARAADGSMRDA 217 (647)
T ss_pred chHHHhhheEeeCCCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHcCCCHHHH
Confidence 3222 234689999999999999998765221 22344667788999999988533
No 63
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.62 E-value=3.5e-06 Score=83.83 Aligned_cols=176 Identities=15% Similarity=0.226 Sum_probs=110.3
Q ss_pred CCceeccchhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhccc-----eeeEEEEeehhhhhhcCChHHHHH
Q 009306 188 EDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRH-----FSGSYFARNVREAEETCRLGDLRQ 262 (538)
Q Consensus 188 ~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-----f~~~~~~~~~~~~~~~~~~~~l~~ 262 (538)
..++|.+..++.+...+..+ .-.+...++|+.|+||||+|+.++..+-.. ++....+... ......... .+
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~-~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~--~~~~i~v~~-ir 79 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKN-RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPI--NKKSIGVDD-IR 79 (313)
T ss_pred hhccCcHHHHHHHHHHHHcC-CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccc--cCCCCCHHH-HH
Confidence 46789888888999888643 235678899999999999999999865321 2222122100 001111111 12
Q ss_pred HHHHHHhcCCCCCCchhhcHHHHHHHhcCCCeEEEEecCC--ChHHHHHHhcCcCCCCCCCEEEEeccchhh-hhhc-CC
Q 009306 263 QLLSTLLNDGNVKNFLNTDLNFQSRRLTRKKVLIVFDDVD--HPRQIKILVGRLDLFASGSRIIITTRDRQV-LANC-GV 338 (538)
Q Consensus 263 ~l~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~--~~~~~~~l~~~l~~~~~~~~iiiTtR~~~~-~~~~-~~ 338 (538)
.+...+... -..+++-++|+|+++ +......++..+....+++.+|++|.+... ++.+ ..
T Consensus 80 ~~~~~~~~~----------------p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SR 143 (313)
T PRK05564 80 NIIEEVNKK----------------PYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSR 143 (313)
T ss_pred HHHHHHhcC----------------cccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhh
Confidence 222211110 012345577888875 456678888888776778888888866533 2222 23
Q ss_pred CeeEEcCCCCHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhcCCcHHHH
Q 009306 339 DEVYQMEELVHDDALRLFSRHAFGGDHPHESHTELACKTIKYARGVPLALE 389 (538)
Q Consensus 339 ~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~ 389 (538)
...+++.+++.++....+.+... ....+.+..++..++|.|.-+.
T Consensus 144 c~~~~~~~~~~~~~~~~l~~~~~------~~~~~~~~~l~~~~~g~~~~a~ 188 (313)
T PRK05564 144 CQIYKLNRLSKEEIEKFISYKYN------DIKEEEKKSAIAFSDGIPGKVE 188 (313)
T ss_pred ceeeeCCCcCHHHHHHHHHHHhc------CCCHHHHHHHHHHcCCCHHHHH
Confidence 46899999999999998876541 1234557788999999986443
No 64
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.59 E-value=1.2e-06 Score=90.80 Aligned_cols=167 Identities=13% Similarity=0.188 Sum_probs=101.5
Q ss_pred ceEEEEeccCCCchhHHHHHHHHhhccce--eeEEEEeehhhhhhcCChHHHHHHHHHHHhcCCCCCCchhhcHHHHHHH
Q 009306 211 VYKLGIWGIGGIGKTTIAGAIFNKISRHF--SGSYFARNVREAEETCRLGDLRQQLLSTLLNDGNVKNFLNTDLNFQSRR 288 (538)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f--~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~~ 288 (538)
...+.|+|..|+|||+|++++++.+.... ..++++. ...+...+...+.... .....+++.
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~----------~~~f~~~~~~~l~~~~-------~~~~~~~~~ 203 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS----------GDEFARKAVDILQKTH-------KEIEQFKNE 203 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE----------HHHHHHHHHHHHHHhh-------hHHHHHHHH
Confidence 45689999999999999999999765432 2334443 2234444444333210 112223333
Q ss_pred hcCCCeEEEEecCCCh----HHHHHHhcCcCC-CCCCCEEEEeccch-hh--------hhhcCCCeeEEcCCCCHHHHHH
Q 009306 289 LTRKKVLIVFDDVDHP----RQIKILVGRLDL-FASGSRIIITTRDR-QV--------LANCGVDEVYQMEELVHDDALR 354 (538)
Q Consensus 289 l~~k~~LlVlDdv~~~----~~~~~l~~~l~~-~~~~~~iiiTtR~~-~~--------~~~~~~~~~~~l~~L~~~ea~~ 354 (538)
+. ..-+|||||+... ...+.+...+.. ...+..||+|+... .. ...+...-++.+++++.++..+
T Consensus 204 ~~-~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~ 282 (450)
T PRK14087 204 IC-QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATA 282 (450)
T ss_pred hc-cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHH
Confidence 33 3458899999532 223333322221 13455788887533 12 2223344578899999999999
Q ss_pred HHHhhhcCCCCCCCchHHHHHHHHHHhcCCcHHHHHHHHHh
Q 009306 355 LFSRHAFGGDHPHESHTELACKTIKYARGVPLALEVLGRYL 395 (538)
Q Consensus 355 Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~L 395 (538)
++.+++-.........++.+.-|++.++|.|-.+.-+...+
T Consensus 283 iL~~~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~~l 323 (450)
T PRK14087 283 IIKKEIKNQNIKQEVTEEAINFISNYYSDDVRKIKGSVSRL 323 (450)
T ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 99998732221124668889999999999998877665443
No 65
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.59 E-value=1e-06 Score=95.99 Aligned_cols=173 Identities=24% Similarity=0.344 Sum_probs=102.6
Q ss_pred CCCCCceeccchhH---HHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhhcCChHHHH
Q 009306 185 SENEDLVGVRLPMK---EIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEETCRLGDLR 261 (538)
Q Consensus 185 ~~~~~~vGR~~~l~---~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~ 261 (538)
...+.|+|++..+. .|...+.. +....+.|+|++|+||||||+.+++.....|. .+... ...+..+
T Consensus 25 ~tldd~vGQe~ii~~~~~L~~~i~~--~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~---~lna~-----~~~i~di- 93 (725)
T PRK13341 25 RTLEEFVGQDHILGEGRLLRRAIKA--DRVGSLILYGPPGVGKTTLARIIANHTRAHFS---SLNAV-----LAGVKDL- 93 (725)
T ss_pred CcHHHhcCcHHHhhhhHHHHHHHhc--CCCceEEEECCCCCCHHHHHHHHHHHhcCcce---eehhh-----hhhhHHH-
Confidence 34467899998874 46666654 34556899999999999999999987654441 12110 0111111
Q ss_pred HHHHHHHhcCCCCCCchhhcHHHHHHHh--cCCCeEEEEecCCC--hHHHHHHhcCcCCCCCCCEEEEe--ccchh--hh
Q 009306 262 QQLLSTLLNDGNVKNFLNTDLNFQSRRL--TRKKVLIVFDDVDH--PRQIKILVGRLDLFASGSRIIIT--TRDRQ--VL 333 (538)
Q Consensus 262 ~~l~~~l~~~~~~~~~~~~~~~~l~~~l--~~k~~LlVlDdv~~--~~~~~~l~~~l~~~~~~~~iiiT--tR~~~--~~ 333 (538)
+.. .....+.+ .+++.+|+|||++. ..+.+.+...+. .+..++|+ |.+.. +.
T Consensus 94 r~~-----------------i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~ 153 (725)
T PRK13341 94 RAE-----------------VDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVN 153 (725)
T ss_pred HHH-----------------HHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhh
Confidence 111 11111111 24567999999964 445556665442 34444443 33321 11
Q ss_pred hhc-CCCeeEEcCCCCHHHHHHHHHhhhcC-----CCCCCCchHHHHHHHHHHhcCCcHHH
Q 009306 334 ANC-GVDEVYQMEELVHDDALRLFSRHAFG-----GDHPHESHTELACKTIKYARGVPLAL 388 (538)
Q Consensus 334 ~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~-----~~~~~~~~~~~~~~i~~~~~G~PLal 388 (538)
..+ .....+.+++|+.++...++.+.+-. +.......++....+++.+.|+.--+
T Consensus 154 ~aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R~l 214 (725)
T PRK13341 154 KALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDARSL 214 (725)
T ss_pred hHhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHHHH
Confidence 111 12357899999999999999876621 12223456777889999999986433
No 66
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.58 E-value=3e-06 Score=77.63 Aligned_cols=88 Identities=17% Similarity=0.234 Sum_probs=62.0
Q ss_pred CCCeEEEEecCCCh--HHHHHHhcCcCCCCCCCEEEEeccch-hhhhhc-CCCeeEEcCCCCHHHHHHHHHhhhcCCCCC
Q 009306 291 RKKVLIVFDDVDHP--RQIKILVGRLDLFASGSRIIITTRDR-QVLANC-GVDEVYQMEELVHDDALRLFSRHAFGGDHP 366 (538)
Q Consensus 291 ~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~iiiTtR~~-~~~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~ 366 (538)
+.+-++|+||++.. ...+.++..+....+.+.+|++|++. .+...+ .....+++.+++.++..+.+.+..
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~g------ 168 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQG------ 168 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHcC------
Confidence 45568999999754 44666766666555667777777654 222222 234689999999999999998761
Q ss_pred CCchHHHHHHHHHHhcCCcH
Q 009306 367 HESHTELACKTIKYARGVPL 386 (538)
Q Consensus 367 ~~~~~~~~~~i~~~~~G~PL 386 (538)
...+.+..+++.++|.|.
T Consensus 169 --i~~~~~~~i~~~~~g~~r 186 (188)
T TIGR00678 169 --ISEEAAELLLALAGGSPG 186 (188)
T ss_pred --CCHHHHHHHHHHcCCCcc
Confidence 235678899999999985
No 67
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.57 E-value=5.2e-07 Score=78.60 Aligned_cols=54 Identities=28% Similarity=0.323 Sum_probs=40.3
Q ss_pred eeccchhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEe
Q 009306 191 VGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFAR 246 (538)
Q Consensus 191 vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 246 (538)
+|++..+..+...+... ..+.+.|+|++|+|||+|++.+++.+......++++.
T Consensus 1 ~~~~~~~~~i~~~~~~~--~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~ 54 (151)
T cd00009 1 VGQEEAIEALREALELP--PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLN 54 (151)
T ss_pred CchHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEe
Confidence 47788888888887642 3457999999999999999999998753333344443
No 68
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.57 E-value=3.1e-06 Score=93.34 Aligned_cols=193 Identities=10% Similarity=0.057 Sum_probs=111.8
Q ss_pred CCCCCCceeccchhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhcccee---eEEEEe-ehhhhhhc-CChH
Q 009306 184 HSENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFS---GSYFAR-NVREAEET-CRLG 258 (538)
Q Consensus 184 ~~~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~---~~~~~~-~~~~~~~~-~~~~ 258 (538)
|.....+||.+..++.|...+..+. -...+.++|+.|+||||+|+.+++.+..... ..|-.+ .+...... ....
T Consensus 11 P~~f~eiiGqe~v~~~L~~~i~~~r-i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~ 89 (824)
T PRK07764 11 PATFAEVIGQEHVTEPLSTALDSGR-INHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSL 89 (824)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCC
Confidence 3444789999999999999987532 2456889999999999999999987642110 001000 00000000 0000
Q ss_pred HHHHHHHHHHhcCCCCCCchhhcHHHHHHH-----hcCCCeEEEEecCCCh--HHHHHHhcCcCCCCCCCEEEEeccc-h
Q 009306 259 DLRQQLLSTLLNDGNVKNFLNTDLNFQSRR-----LTRKKVLIVFDDVDHP--RQIKILVGRLDLFASGSRIIITTRD-R 330 (538)
Q Consensus 259 ~l~~~l~~~l~~~~~~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~iiiTtR~-~ 330 (538)
++. .+... ....+++... +++. ..++.-++|||+++.. .....|+..+.....++.+|++|.+ .
T Consensus 90 dv~-----eidaa--s~~~Vd~iR~-l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~ 161 (824)
T PRK07764 90 DVT-----EIDAA--SHGGVDDARE-LRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPD 161 (824)
T ss_pred cEE-----Eeccc--ccCCHHHHHH-HHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChh
Confidence 000 00000 0011122111 1111 2345558899999754 5566777777665667776666543 3
Q ss_pred hhhhhc-CCCeeEEcCCCCHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhcCCcHH
Q 009306 331 QVLANC-GVDEVYQMEELVHDDALRLFSRHAFGGDHPHESHTELACKTIKYARGVPLA 387 (538)
Q Consensus 331 ~~~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLa 387 (538)
.++..+ .....|++..++.++..+++.+.+-.. ......+....+++.++|.+..
T Consensus 162 kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~E--Gv~id~eal~lLa~~sgGdlR~ 217 (824)
T PRK07764 162 KVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQE--GVPVEPGVLPLVIRAGGGSVRD 217 (824)
T ss_pred hhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHcCCCHHH
Confidence 444433 234689999999999999888765221 2234566778899999998843
No 69
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.56 E-value=3.9e-06 Score=89.09 Aligned_cols=202 Identities=14% Similarity=0.065 Sum_probs=113.5
Q ss_pred CCCCCCceeccchhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhcccee---eEEEEe-ehhhhhhc-CChH
Q 009306 184 HSENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFS---GSYFAR-NVREAEET-CRLG 258 (538)
Q Consensus 184 ~~~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~---~~~~~~-~~~~~~~~-~~~~ 258 (538)
|....+++|.+..++.|..++..+ .-...+.++|+.|+||||+|+.++..+..... ..|-.+ .+...... ....
T Consensus 9 P~~f~eivGq~~i~~~L~~~i~~~-r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~ 87 (584)
T PRK14952 9 PATFAEVVGQEHVTEPLSSALDAG-RINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSI 87 (584)
T ss_pred CCcHHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCc
Confidence 344578999999999999998753 23456789999999999999999987542110 000000 00000000 0000
Q ss_pred HHHHHHHHHHhcCCCCC-CchhhcHHHHHHH-hcCCCeEEEEecCCC--hHHHHHHhcCcCCCCCCCEEEEeccc-hhhh
Q 009306 259 DLRQQLLSTLLNDGNVK-NFLNTDLNFQSRR-LTRKKVLIVFDDVDH--PRQIKILVGRLDLFASGSRIIITTRD-RQVL 333 (538)
Q Consensus 259 ~l~~~l~~~l~~~~~~~-~~~~~~~~~l~~~-l~~k~~LlVlDdv~~--~~~~~~l~~~l~~~~~~~~iiiTtR~-~~~~ 333 (538)
++. .+....... ..+.++.+.+... ..+++-++|||+++. ......|+..+.....+..+|++|.+ ..+.
T Consensus 88 dvi-----eidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll 162 (584)
T PRK14952 88 DVV-----ELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVL 162 (584)
T ss_pred eEE-----EeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhH
Confidence 000 000000000 1111111111111 123455899999974 45567777777655566766655543 4444
Q ss_pred hhc-CCCeeEEcCCCCHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhcCCcH-HHHHHHH
Q 009306 334 ANC-GVDEVYQMEELVHDDALRLFSRHAFGGDHPHESHTELACKTIKYARGVPL-ALEVLGR 393 (538)
Q Consensus 334 ~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PL-al~~~~~ 393 (538)
..+ .....+++.+++.++..+.+...+... ......+....|++.++|.+. ++..+-.
T Consensus 163 ~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~e--gi~i~~~al~~Ia~~s~GdlR~aln~Ldq 222 (584)
T PRK14952 163 PTIRSRTHHYPFRLLPPRTMRALIARICEQE--GVVVDDAVYPLVIRAGGGSPRDTLSVLDQ 222 (584)
T ss_pred HHHHHhceEEEeeCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 332 234689999999999999888766322 223446677888999999874 4444433
No 70
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.55 E-value=3.8e-06 Score=85.63 Aligned_cols=182 Identities=16% Similarity=0.181 Sum_probs=108.3
Q ss_pred CCCCCCceeccchhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhccc--------eeeEEEEeehhhhhhcC
Q 009306 184 HSENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRH--------FSGSYFARNVREAEETC 255 (538)
Q Consensus 184 ~~~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~--------f~~~~~~~~~~~~~~~~ 255 (538)
|..-..++|.+..++.+...+..+ .-.+.+.++|++|+|||++|+.+++.+... |...++..+ .....
T Consensus 13 P~~~~~iig~~~~~~~l~~~i~~~-~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~---~~~~~ 88 (367)
T PRK14970 13 PQTFDDVVGQSHITNTLLNAIENN-HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELD---AASNN 88 (367)
T ss_pred CCcHHhcCCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEec---cccCC
Confidence 344577899999999999988753 234578899999999999999998876431 111111110 00001
Q ss_pred ChHHHHHHHHHHHhcCCCCCCchhhcHHHHHHHhcCCCeEEEEecCCCh--HHHHHHhcCcCCCCCCCEEEEecc-chhh
Q 009306 256 RLGDLRQQLLSTLLNDGNVKNFLNTDLNFQSRRLTRKKVLIVFDDVDHP--RQIKILVGRLDLFASGSRIIITTR-DRQV 332 (538)
Q Consensus 256 ~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~iiiTtR-~~~~ 332 (538)
.. .-...+...+... -..+++-++++|+++.. ..+..+...+......+.+|+++. ...+
T Consensus 89 ~~-~~i~~l~~~~~~~----------------p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl 151 (367)
T PRK14970 89 SV-DDIRNLIDQVRIP----------------PQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKI 151 (367)
T ss_pred CH-HHHHHHHHHHhhc----------------cccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccC
Confidence 11 1111222111100 01234558999999643 345666554443344555555553 2222
Q ss_pred hhhc-CCCeeEEcCCCCHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhcCCcHHH
Q 009306 333 LANC-GVDEVYQMEELVHDDALRLFSRHAFGGDHPHESHTELACKTIKYARGVPLAL 388 (538)
Q Consensus 333 ~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal 388 (538)
...+ .....+++++++.++....+...+... ......+.+..+++.++|.+-.+
T Consensus 152 ~~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~--g~~i~~~al~~l~~~~~gdlr~~ 206 (367)
T PRK14970 152 IPTILSRCQIFDFKRITIKDIKEHLAGIAVKE--GIKFEDDALHIIAQKADGALRDA 206 (367)
T ss_pred CHHHHhcceeEecCCccHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHhCCCCHHHH
Confidence 2221 223578999999999999888876322 22345678889999999977543
No 71
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.55 E-value=2.5e-06 Score=87.55 Aligned_cols=200 Identities=13% Similarity=0.116 Sum_probs=112.0
Q ss_pred CCCCCCceeccchhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhccc--eeeEEEEeehhhhhhcCChHHHH
Q 009306 184 HSENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRH--FSGSYFARNVREAEETCRLGDLR 261 (538)
Q Consensus 184 ~~~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~--f~~~~~~~~~~~~~~~~~~~~l~ 261 (538)
|.....++|.+..++.|..++..+. -...+.++|++|+||||+|+.+++.+... +...-|..... .+.+.-...
T Consensus 12 P~~~~eiiGq~~~~~~L~~~~~~~~-~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~---~~c~~c~~c 87 (397)
T PRK14955 12 PKKFADITAQEHITRTIQNSLRMGR-VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVT---EPCGECESC 87 (397)
T ss_pred CCcHhhccChHHHHHHHHHHHHhCC-cceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCC---CCCCCCHHH
Confidence 3445789999999999988887542 24458899999999999999999876431 00000000000 000000000
Q ss_pred HHHHHHHhc-----CCCCCCchhhcHHHHHHHh-----cCCCeEEEEecCCCh--HHHHHHhcCcCCCCCCCEEEEec-c
Q 009306 262 QQLLSTLLN-----DGNVKNFLNTDLNFQSRRL-----TRKKVLIVFDDVDHP--RQIKILVGRLDLFASGSRIIITT-R 328 (538)
Q Consensus 262 ~~l~~~l~~-----~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~iiiTt-R 328 (538)
+.+...... ........++... +.+.+ .+.+-++|+|+++.. ..+..++..+....+.+.+|++| +
T Consensus 88 ~~~~~~~~~n~~~~~~~~~~~id~Ir~-l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~ 166 (397)
T PRK14955 88 RDFDAGTSLNISEFDAASNNSVDDIRL-LRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTE 166 (397)
T ss_pred HHHhcCCCCCeEeecccccCCHHHHHH-HHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCC
Confidence 000000000 0000011122221 22222 234558899999754 45666766665545566666555 3
Q ss_pred chhhhhhc-CCCeeEEcCCCCHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhcCCcHHHHH
Q 009306 329 DRQVLANC-GVDEVYQMEELVHDDALRLFSRHAFGGDHPHESHTELACKTIKYARGVPLALEV 390 (538)
Q Consensus 329 ~~~~~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~ 390 (538)
...+...+ .....+++.+++.++..+.+...+- ........+.+..+++.++|.+--+..
T Consensus 167 ~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~--~~g~~i~~~al~~l~~~s~g~lr~a~~ 227 (397)
T PRK14955 167 LHKIPATIASRCQRFNFKRIPLEEIQQQLQGICE--AEGISVDADALQLIGRKAQGSMRDAQS 227 (397)
T ss_pred hHHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH--HcCCCCCHHHHHHHHHHcCCCHHHHHH
Confidence 33333222 1224788999999999998887762 222345678889999999998854433
No 72
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.54 E-value=2.1e-06 Score=90.34 Aligned_cols=198 Identities=16% Similarity=0.133 Sum_probs=110.9
Q ss_pred CCCCCCceeccchhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhhcCChHHHHHH
Q 009306 184 HSENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEETCRLGDLRQQ 263 (538)
Q Consensus 184 ~~~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ 263 (538)
|.....++|++..++.|...+..+. -.+.+.++|+.|+||||+|+.++..+...- |.. .. ..+--...+.
T Consensus 12 P~~F~dIIGQe~iv~~L~~aI~~~r-l~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~----~~~----~~-~Cg~C~sCr~ 81 (605)
T PRK05896 12 PHNFKQIIGQELIKKILVNAILNNK-LTHAYIFSGPRGIGKTSIAKIFAKAINCLN----PKD----GD-CCNSCSVCES 81 (605)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHhcCCC----CCC----CC-CCcccHHHHH
Confidence 4455789999999999999886532 346789999999999999999998764211 100 00 0000000000
Q ss_pred HHHH-------HhcCCCCC-CchhhcHHHHHHH-hcCCCeEEEEecCCCh--HHHHHHhcCcCCCCCCCEEEEeccc-hh
Q 009306 264 LLST-------LLNDGNVK-NFLNTDLNFQSRR-LTRKKVLIVFDDVDHP--RQIKILVGRLDLFASGSRIIITTRD-RQ 331 (538)
Q Consensus 264 l~~~-------l~~~~~~~-~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~iiiTtR~-~~ 331 (538)
+... +....... ..++.....+... ...++-++|+|+++.. .....|+..+.....+..+|++|.. ..
T Consensus 82 i~~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~K 161 (605)
T PRK05896 82 INTNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQK 161 (605)
T ss_pred HHcCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHh
Confidence 0000 00000000 0111111111110 1123347999999753 4556666655544455666555533 33
Q ss_pred hhhh-cCCCeeEEcCCCCHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhcCCcH-HHHHHHH
Q 009306 332 VLAN-CGVDEVYQMEELVHDDALRLFSRHAFGGDHPHESHTELACKTIKYARGVPL-ALEVLGR 393 (538)
Q Consensus 332 ~~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PL-al~~~~~ 393 (538)
+... ......+++.+++.++....+...+-. .......+.+..+++.++|.+. |+..+-.
T Consensus 162 Ll~TI~SRcq~ieF~~Ls~~eL~~~L~~il~k--egi~Is~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 162 IPLTIISRCQRYNFKKLNNSELQELLKSIAKK--EKIKIEDNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred hhHHHHhhhhhcccCCCCHHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 3322 223467899999999999988886622 2223446778899999999774 4444443
No 73
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.53 E-value=6.3e-06 Score=87.97 Aligned_cols=195 Identities=16% Similarity=0.152 Sum_probs=114.8
Q ss_pred CCCCCCceeccchhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhcccee---------eEEEEeehhhhhh-
Q 009306 184 HSENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFS---------GSYFARNVREAEE- 253 (538)
Q Consensus 184 ~~~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~---------~~~~~~~~~~~~~- 253 (538)
|.....++|.+..++.|...+..+. -...+.++|+.|+||||+|+.+++.+-.... .+.+-..+.....
T Consensus 20 P~~f~dliGq~~~v~~L~~~~~~gr-i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~C~~i~~g 98 (598)
T PRK09111 20 PQTFDDLIGQEAMVRTLTNAFETGR-IAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEHCQAIMEG 98 (598)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHHHHHHhcC
Confidence 3445789999999999999887542 3456899999999999999999987643221 0000000000000
Q ss_pred -cCChHHHHHHHHHHHhcCCCCCCchhh---cHHHHHHH-hcCCCeEEEEecCCCh--HHHHHHhcCcCCCCCCCEEEEe
Q 009306 254 -TCRLGDLRQQLLSTLLNDGNVKNFLNT---DLNFQSRR-LTRKKVLIVFDDVDHP--RQIKILVGRLDLFASGSRIIIT 326 (538)
Q Consensus 254 -~~~~~~l~~~l~~~l~~~~~~~~~~~~---~~~~l~~~-l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~iiiT 326 (538)
..++..+ .... ...+++ +...+... ...++-++|||+++.. .....|+..+....+++.+|++
T Consensus 99 ~h~Dv~e~--------~a~s--~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~ 168 (598)
T PRK09111 99 RHVDVLEM--------DAAS--HTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFA 168 (598)
T ss_pred CCCceEEe--------cccc--cCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEE
Confidence 0000000 0000 011222 11111110 1234458999999654 4566777666655667777665
Q ss_pred c-cchhhhhhc-CCCeeEEcCCCCHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhcCCcHHHHHH
Q 009306 327 T-RDRQVLANC-GVDEVYQMEELVHDDALRLFSRHAFGGDHPHESHTELACKTIKYARGVPLALEVL 391 (538)
Q Consensus 327 t-R~~~~~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~ 391 (538)
| ....+...+ .....+++.+++.++....+.+.+- ........+.+..|++.++|.+.-+...
T Consensus 169 tte~~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~--kegi~i~~eAl~lIa~~a~Gdlr~al~~ 233 (598)
T PRK09111 169 TTEIRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAA--KEGVEVEDEALALIARAAEGSVRDGLSL 233 (598)
T ss_pred eCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHH--HcCCCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 5 333333332 2346889999999999999988762 2223345677889999999998655433
No 74
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.53 E-value=3.2e-06 Score=89.46 Aligned_cols=196 Identities=10% Similarity=0.099 Sum_probs=114.2
Q ss_pred CCCCCCceeccchhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhcccee--e-EEEEeehhhhhhcCChHHH
Q 009306 184 HSENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFS--G-SYFARNVREAEETCRLGDL 260 (538)
Q Consensus 184 ~~~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~--~-~~~~~~~~~~~~~~~~~~l 260 (538)
|....+++|.+..++.|...+..+ .-...+.++|+.|+||||+|+.+++.+-.... . .|-.+ ..
T Consensus 12 P~sf~dIiGQe~v~~~L~~ai~~~-ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C------------~s 78 (624)
T PRK14959 12 PQTFAEVAGQETVKAILSRAAQEN-RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTC------------EQ 78 (624)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCccc------------HH
Confidence 334467899998888888888753 22467889999999999999999987642110 0 00000 00
Q ss_pred HHHHHHHH----hcCC-CCCCchhhcHHHHHHH-----hcCCCeEEEEecCCCh--HHHHHHhcCcCCCCCCCEEEEecc
Q 009306 261 RQQLLSTL----LNDG-NVKNFLNTDLNFQSRR-----LTRKKVLIVFDDVDHP--RQIKILVGRLDLFASGSRIIITTR 328 (538)
Q Consensus 261 ~~~l~~~l----~~~~-~~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~iiiTtR 328 (538)
.+.+.... .... .....+++.. .+.+. ..+++-+||||+++.. .....|+..+........+|++|.
T Consensus 79 C~~i~~g~hpDv~eId~a~~~~Id~iR-~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt 157 (624)
T PRK14959 79 CRKVTQGMHVDVVEIDGASNRGIDDAK-RLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATT 157 (624)
T ss_pred HHHHhcCCCCceEEEecccccCHHHHH-HHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecC
Confidence 00000000 0000 0000111111 11111 1345669999999754 456667666654345566666555
Q ss_pred c-hhhhhhc-CCCeeEEcCCCCHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhcCCc-HHHHHHHHHh
Q 009306 329 D-RQVLANC-GVDEVYQMEELVHDDALRLFSRHAFGGDHPHESHTELACKTIKYARGVP-LALEVLGRYL 395 (538)
Q Consensus 329 ~-~~~~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~P-Lal~~~~~~L 395 (538)
+ ..+...+ .....+++.+++.++..+.+...+... ......+.+..+++.++|.+ .++..+...+
T Consensus 158 ~~~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~e--gi~id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 158 EPHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGRE--GVDYDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred ChhhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 4 3333222 223578999999999999988766322 22345678889999999976 6777766544
No 75
>PRK06620 hypothetical protein; Validated
Probab=98.53 E-value=1.8e-06 Score=80.53 Aligned_cols=138 Identities=11% Similarity=0.073 Sum_probs=85.1
Q ss_pred eEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhhcCChHHHHHHHHHHHhcCCCCCCchhhcHHHHHHHhcC
Q 009306 212 YKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEETCRLGDLRQQLLSTLLNDGNVKNFLNTDLNFQSRRLTR 291 (538)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~ 291 (538)
+.+.|+|++|+|||+|++.+++.... .++... . . .. +.. .
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~-----~~~~~~---~--~-----~~------------------------~~~-~ 84 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNA-----YIIKDI---F--F-----NE------------------------EIL-E 84 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCC-----EEcchh---h--h-----ch------------------------hHH-h
Confidence 56999999999999999988776432 222200 0 0 00 001 1
Q ss_pred CCeEEEEecCCChHH--HHHHhcCcCCCCCCCEEEEeccchh-------hhhhcCCCeeEEcCCCCHHHHHHHHHhhhcC
Q 009306 292 KKVLIVFDDVDHPRQ--IKILVGRLDLFASGSRIIITTRDRQ-------VLANCGVDEVYQMEELVHDDALRLFSRHAFG 362 (538)
Q Consensus 292 k~~LlVlDdv~~~~~--~~~l~~~l~~~~~~~~iiiTtR~~~-------~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~ 362 (538)
..-+++|||++...+ +-.+...+. ..|..+|+|++... ..+.+....++++++++.++..+++.+.+..
T Consensus 85 ~~d~lliDdi~~~~~~~lf~l~N~~~--e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~ 162 (214)
T PRK06620 85 KYNAFIIEDIENWQEPALLHIFNIIN--EKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSI 162 (214)
T ss_pred cCCEEEEeccccchHHHHHHHHHHHH--hcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHH
Confidence 234788999975432 222222222 34668889887442 2223334458999999999988888887621
Q ss_pred CCCCCCchHHHHHHHHHHhcCCcHHHHHHHH
Q 009306 363 GDHPHESHTELACKTIKYARGVPLALEVLGR 393 (538)
Q Consensus 363 ~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~ 393 (538)
..-...++...-+++.+.|.--.+.-+-.
T Consensus 163 --~~l~l~~ev~~~L~~~~~~d~r~l~~~l~ 191 (214)
T PRK06620 163 --SSVTISRQIIDFLLVNLPREYSKIIEILE 191 (214)
T ss_pred --cCCCCCHHHHHHHHHHccCCHHHHHHHHH
Confidence 22345577888888888877655544433
No 76
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.50 E-value=3.1e-06 Score=86.51 Aligned_cols=174 Identities=16% Similarity=0.210 Sum_probs=99.1
Q ss_pred CCCCceeccchhHHHHHhhhc-----------CCCCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhhc
Q 009306 186 ENEDLVGVRLPMKEIESLLRT-----------GSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEET 254 (538)
Q Consensus 186 ~~~~~vGR~~~l~~l~~~L~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~ 254 (538)
..+++.|++.++++|.+.+.. +....+-+.|+|++|+|||++|++++++....|- .+. ..
T Consensus 129 ~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i---~v~-~~----- 199 (389)
T PRK03992 129 TYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFI---RVV-GS----- 199 (389)
T ss_pred CHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEE---Eee-hH-----
Confidence 345788999999999886532 1233556999999999999999999998654321 111 11
Q ss_pred CChHHHHHHHHHHHhcCCCCCCchhhcHHHHHH-HhcCCCeEEEEecCCCh-------------HH---HHHHhcCcCCC
Q 009306 255 CRLGDLRQQLLSTLLNDGNVKNFLNTDLNFQSR-RLTRKKVLIVFDDVDHP-------------RQ---IKILVGRLDLF 317 (538)
Q Consensus 255 ~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~-------------~~---~~~l~~~l~~~ 317 (538)
.+. ....+. . ......+.+ .-...+.+|+|||++.. +. +..++..+..+
T Consensus 200 ----~l~----~~~~g~-----~-~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~ 265 (389)
T PRK03992 200 ----ELV----QKFIGE-----G-ARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGF 265 (389)
T ss_pred ----HHh----Hhhccc-----h-HHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhcccc
Confidence 111 110000 0 011111111 12356789999999753 11 22222222221
Q ss_pred --CCCCEEEEeccchhhhhh-----cCCCeeEEcCCCCHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhcCCc
Q 009306 318 --ASGSRIIITTRDRQVLAN-----CGVDEVYQMEELVHDDALRLFSRHAFGGDHPHESHTELACKTIKYARGVP 385 (538)
Q Consensus 318 --~~~~~iiiTtR~~~~~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 385 (538)
..+..||.||.....+.. ...+..+++++.+.++-.++|..+..+...... .....+++.+.|.-
T Consensus 266 ~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~---~~~~~la~~t~g~s 337 (389)
T PRK03992 266 DPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADD---VDLEELAELTEGAS 337 (389)
T ss_pred CCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCc---CCHHHHHHHcCCCC
Confidence 235567777765433221 123567999999999999999988743222211 12456677776653
No 77
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.49 E-value=1.4e-06 Score=93.75 Aligned_cols=197 Identities=14% Similarity=0.116 Sum_probs=113.2
Q ss_pred CCCCCceeccchhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhhcCChHHHHHHH
Q 009306 185 SENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEETCRLGDLRQQL 264 (538)
Q Consensus 185 ~~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l 264 (538)
.....++|.+..++.|..++..+. -...+.++|+.|+||||+|+.+++.+.......-. ...+.-...+.+
T Consensus 13 ~~~~eiiGq~~~~~~L~~~i~~~~-i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~--------~~c~~c~~c~~i 83 (585)
T PRK14950 13 QTFAELVGQEHVVQTLRNAIAEGR-VAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKG--------RPCGTCEMCRAI 83 (585)
T ss_pred CCHHHhcCCHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCC--------CCCccCHHHHHH
Confidence 344789999999999988887542 34567899999999999999999876421100000 000000111111
Q ss_pred HHHHhcC----CC-CCCchhhcHHHHHHHh-----cCCCeEEEEecCCCh--HHHHHHhcCcCCCCCCCEEEEeccc-hh
Q 009306 265 LSTLLND----GN-VKNFLNTDLNFQSRRL-----TRKKVLIVFDDVDHP--RQIKILVGRLDLFASGSRIIITTRD-RQ 331 (538)
Q Consensus 265 ~~~l~~~----~~-~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~iiiTtR~-~~ 331 (538)
....... .. .....++.. .+.+.+ ..++-++|||+++.. +..+.|+..+....+...+|+++.+ ..
T Consensus 84 ~~~~~~d~~~i~~~~~~~vd~ir-~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~k 162 (585)
T PRK14950 84 AEGSAVDVIEMDAASHTSVDDAR-EIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHK 162 (585)
T ss_pred hcCCCCeEEEEeccccCCHHHHH-HHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhh
Confidence 1100000 00 001111111 111221 234568999999744 5566776666544556666665543 33
Q ss_pred hhhhc-CCCeeEEcCCCCHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhcCCcHHHHHHHH
Q 009306 332 VLANC-GVDEVYQMEELVHDDALRLFSRHAFGGDHPHESHTELACKTIKYARGVPLALEVLGR 393 (538)
Q Consensus 332 ~~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~ 393 (538)
+...+ .....+++..++..+....+...+.. .......+.+..+++.++|.+..+.....
T Consensus 163 ll~tI~SR~~~i~f~~l~~~el~~~L~~~a~~--egl~i~~eal~~La~~s~Gdlr~al~~Le 223 (585)
T PRK14950 163 VPATILSRCQRFDFHRHSVADMAAHLRKIAAA--EGINLEPGALEAIARAATGSMRDAENLLQ 223 (585)
T ss_pred hhHHHHhccceeeCCCCCHHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 33322 22357889999999999988877632 22234567788999999999965544433
No 78
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.49 E-value=1.2e-06 Score=87.45 Aligned_cols=156 Identities=17% Similarity=0.226 Sum_probs=90.3
Q ss_pred cccccCCCCCCCceeccchhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhhcCCh
Q 009306 178 RLDDTFHSENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEETCRL 257 (538)
Q Consensus 178 ~~~~~~~~~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 257 (538)
+.....|.....++|.+...+.+..++..+ .-..++.++|++|+|||++|+.+++.....+ ..+. ... ...
T Consensus 11 w~~kyrP~~~~~~~~~~~~~~~l~~~~~~~-~~~~~lll~G~~G~GKT~la~~l~~~~~~~~---~~i~-~~~----~~~ 81 (316)
T PHA02544 11 WEQKYRPSTIDECILPAADKETFKSIVKKG-RIPNMLLHSPSPGTGKTTVAKALCNEVGAEV---LFVN-GSD----CRI 81 (316)
T ss_pred ceeccCCCcHHHhcCcHHHHHHHHHHHhcC-CCCeEEEeeCcCCCCHHHHHHHHHHHhCccc---eEec-cCc----ccH
Confidence 334445556688999999999999988753 2356777799999999999999998763321 2222 111 111
Q ss_pred HHHHHHHHHHHhcCCCCCCchhhcHHHHHHHhcCCCeEEEEecCCCh---HHHHHHhcCcCCCCCCCEEEEeccchhhh-
Q 009306 258 GDLRQQLLSTLLNDGNVKNFLNTDLNFQSRRLTRKKVLIVFDDVDHP---RQIKILVGRLDLFASGSRIIITTRDRQVL- 333 (538)
Q Consensus 258 ~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~---~~~~~l~~~l~~~~~~~~iiiTtR~~~~~- 333 (538)
.. .+..+....... .....+-+|||||++.. +....+...+.....++++|+||.....+
T Consensus 82 ~~-i~~~l~~~~~~~---------------~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~ 145 (316)
T PHA02544 82 DF-VRNRLTRFASTV---------------SLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGII 145 (316)
T ss_pred HH-HHHHHHHHHHhh---------------cccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhch
Confidence 11 111111110000 01134568999999754 22333333333345677888888654221
Q ss_pred hhc-CCCeeEEcCCCCHHHHHHHHHh
Q 009306 334 ANC-GVDEVYQMEELVHDDALRLFSR 358 (538)
Q Consensus 334 ~~~-~~~~~~~l~~L~~~ea~~Lf~~ 358 (538)
+.+ .....+.++..+.++..+++..
T Consensus 146 ~~l~sR~~~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 146 EPLRSRCRVIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred HHHHhhceEEEeCCCCHHHHHHHHHH
Confidence 111 1234677888888888776554
No 79
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.49 E-value=4.4e-06 Score=86.64 Aligned_cols=162 Identities=17% Similarity=0.134 Sum_probs=97.5
Q ss_pred ceEEEEeccCCCchhHHHHHHHHhhcccee--eEEEEeehhhhhhcCChHHHHHHHHHHHhcCCCCCCchhhcHHHHHHH
Q 009306 211 VYKLGIWGIGGIGKTTIAGAIFNKISRHFS--GSYFARNVREAEETCRLGDLRQQLLSTLLNDGNVKNFLNTDLNFQSRR 288 (538)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~--~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~~ 288 (538)
...+.|+|++|+|||+|+.++++.+...++ .++|+. ...+...+...+... .. ....+.
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~----------~~~f~~~~~~~~~~~-----~~----~~f~~~ 190 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT----------SEKFLNDLVDSMKEG-----KL----NEFREK 190 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE----------HHHHHHHHHHHHhcc-----cH----HHHHHH
Confidence 456999999999999999999998766543 344444 122333443333211 11 123333
Q ss_pred hcCCCeEEEEecCCCh---H-HHHHHhcCcCC-CCCCCEEEEecc-chhhh--------hhcCCCeeEEcCCCCHHHHHH
Q 009306 289 LTRKKVLIVFDDVDHP---R-QIKILVGRLDL-FASGSRIIITTR-DRQVL--------ANCGVDEVYQMEELVHDDALR 354 (538)
Q Consensus 289 l~~k~~LlVlDdv~~~---~-~~~~l~~~l~~-~~~~~~iiiTtR-~~~~~--------~~~~~~~~~~l~~L~~~ea~~ 354 (538)
...+.-+|+|||++.. . .-+.+...+.. ...+..+|+||. .+.-+ ..+....++++++.+.+.-.+
T Consensus 191 ~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~ 270 (440)
T PRK14088 191 YRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKK 270 (440)
T ss_pred HHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHH
Confidence 3345668999999632 1 11222222110 123557888874 33222 122334578999999999999
Q ss_pred HHHhhhcCCCCCCCchHHHHHHHHHHhcCCcHHHHHHHH
Q 009306 355 LFSRHAFGGDHPHESHTELACKTIKYARGVPLALEVLGR 393 (538)
Q Consensus 355 Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~ 393 (538)
++.+.+.. ......++.+..|++.+.|+.-.|.-+-.
T Consensus 271 IL~~~~~~--~~~~l~~ev~~~Ia~~~~~~~R~L~g~l~ 307 (440)
T PRK14088 271 IARKMLEI--EHGELPEEVLNFVAENVDDNLRRLRGAII 307 (440)
T ss_pred HHHHHHHh--cCCCCCHHHHHHHHhccccCHHHHHHHHH
Confidence 99988732 23345578889999999888765554443
No 80
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.49 E-value=3.4e-06 Score=89.27 Aligned_cols=196 Identities=13% Similarity=0.092 Sum_probs=109.7
Q ss_pred CCCCCceeccchhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhcccee---eEEEEe-ehhhhhhcCChHHH
Q 009306 185 SENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFS---GSYFAR-NVREAEETCRLGDL 260 (538)
Q Consensus 185 ~~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~---~~~~~~-~~~~~~~~~~~~~l 260 (538)
.....++|.+..++.|..++..+. -...+.++|++|+||||+|+.++..+-.... ..|-.+ .+....... ..++
T Consensus 13 ~~f~divGq~~v~~~L~~~i~~~~-~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~-~~d~ 90 (527)
T PRK14969 13 KSFSELVGQEHVVRALTNALEQQR-LHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGR-FVDL 90 (527)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcCC-CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCC-CCce
Confidence 344778999999999998887532 2456789999999999999999987632110 000000 000000000 0000
Q ss_pred HHHHHHHHhcCCCCCCchhhcHHHHHHH----hcCCCeEEEEecCCCh--HHHHHHhcCcCCCCCCCEEEEeccch-hhh
Q 009306 261 RQQLLSTLLNDGNVKNFLNTDLNFQSRR----LTRKKVLIVFDDVDHP--RQIKILVGRLDLFASGSRIIITTRDR-QVL 333 (538)
Q Consensus 261 ~~~l~~~l~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~iiiTtR~~-~~~ 333 (538)
. .+... .....++....+... ..+++-++|+|+++.. .....++..+......+.+|++|.+. .+.
T Consensus 91 ~-----ei~~~--~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~kil 163 (527)
T PRK14969 91 I-----EVDAA--SNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKIP 163 (527)
T ss_pred e-----Eeecc--ccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChhhCc
Confidence 0 00000 001111111111110 1245569999999854 44666776666545566666655443 222
Q ss_pred hhc-CCCeeEEcCCCCHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhcCCcH-HHHHH
Q 009306 334 ANC-GVDEVYQMEELVHDDALRLFSRHAFGGDHPHESHTELACKTIKYARGVPL-ALEVL 391 (538)
Q Consensus 334 ~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PL-al~~~ 391 (538)
..+ .....+++++++.++..+.+...+-.. ......+.+..+++.++|.+. ++..+
T Consensus 164 ~tI~SRc~~~~f~~l~~~~i~~~L~~il~~e--gi~~~~~al~~la~~s~Gslr~al~ll 221 (527)
T PRK14969 164 VTVLSRCLQFNLKQMPPPLIVSHLQHILEQE--NIPFDATALQLLARAAAGSMRDALSLL 221 (527)
T ss_pred hhHHHHHHHHhcCCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 121 113578899999999998887765221 123456677889999999885 44443
No 81
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.48 E-value=7.3e-06 Score=77.45 Aligned_cols=188 Identities=14% Similarity=0.152 Sum_probs=114.8
Q ss_pred cccCCCCCCCceeccchhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhcc--ceeeEEEEeehhhhhhcCCh
Q 009306 180 DDTFHSENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISR--HFSGSYFARNVREAEETCRL 257 (538)
Q Consensus 180 ~~~~~~~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~--~f~~~~~~~~~~~~~~~~~~ 257 (538)
....|+..+.++|.+..++.|...+.. ...+....+||+|.|||+-|..++.++-. -|++++--.+. +...+.
T Consensus 28 eKYrPkt~de~~gQe~vV~~L~~a~~~--~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lna---SderGi 102 (346)
T KOG0989|consen 28 EKYRPKTFDELAGQEHVVQVLKNALLR--RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNA---SDERGI 102 (346)
T ss_pred HHhCCCcHHhhcchHHHHHHHHHHHhh--cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcc---cccccc
Confidence 334566678899999999999988875 45677999999999999999999987533 34444332221 111121
Q ss_pred HHHHHHH--HHHHhcCCCCCCchhhcHHHHHHHhcCCC-eEEEEecCCCh--HHHHHHhcCcCCCCCCCEEEEeccchhh
Q 009306 258 GDLRQQL--LSTLLNDGNVKNFLNTDLNFQSRRLTRKK-VLIVFDDVDHP--RQIKILVGRLDLFASGSRIIITTRDRQV 332 (538)
Q Consensus 258 ~~l~~~l--~~~l~~~~~~~~~~~~~~~~l~~~l~~k~-~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~iiiTtR~~~~ 332 (538)
.-.-..+ ++++..... .... -..++ -+||||+++.. +.|.++...+..+....+.|+.+..-..
T Consensus 103 svvr~Kik~fakl~~~~~--~~~~---------~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsr 171 (346)
T KOG0989|consen 103 SVVREKIKNFAKLTVLLK--RSDG---------YPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSR 171 (346)
T ss_pred cchhhhhcCHHHHhhccc--cccC---------CCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhh
Confidence 1000000 000000000 0000 00123 48899999865 5577777777766777776655543322
Q ss_pred h-hhc-CCCeeEEcCCCCHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhcCCc
Q 009306 333 L-ANC-GVDEVYQMEELVHDDALRLFSRHAFGGDHPHESHTELACKTIKYARGVP 385 (538)
Q Consensus 333 ~-~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 385 (538)
. ..+ ....-+..++|..++...-+...+ ....-..+.+..+.|++.++|--
T Consensus 172 ii~pi~SRC~KfrFk~L~d~~iv~rL~~Ia--~~E~v~~d~~al~~I~~~S~GdL 224 (346)
T KOG0989|consen 172 IIRPLVSRCQKFRFKKLKDEDIVDRLEKIA--SKEGVDIDDDALKLIAKISDGDL 224 (346)
T ss_pred CChHHHhhHHHhcCCCcchHHHHHHHHHHH--HHhCCCCCHHHHHHHHHHcCCcH
Confidence 1 111 122467899999999988888877 33334556778899999998864
No 82
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.47 E-value=1e-05 Score=86.59 Aligned_cols=198 Identities=14% Similarity=0.124 Sum_probs=110.6
Q ss_pred CCCCCCceeccchhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhccc--eeeEEEEeehhh-hhhcCChHHH
Q 009306 184 HSENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRH--FSGSYFARNVRE-AEETCRLGDL 260 (538)
Q Consensus 184 ~~~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~--f~~~~~~~~~~~-~~~~~~~~~l 260 (538)
|.....++|.+..++.|...+..+ .-...+.++|+.|+||||+|+.+++.+-.. .....|.....+ .........+
T Consensus 12 P~~f~eivGQe~i~~~L~~~i~~~-ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~ 90 (620)
T PRK14954 12 PSKFADITAQEHITHTIQNSLRMD-RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDF 90 (620)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC-CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHH
Confidence 344578999999999999988743 234558899999999999999999876431 100011110000 0000000000
Q ss_pred HHHH---HHHHhcCCCCCCchhhcHHHHHHH----hcCCCeEEEEecCCCh--HHHHHHhcCcCCCCCCCEEEEec-cch
Q 009306 261 RQQL---LSTLLNDGNVKNFLNTDLNFQSRR----LTRKKVLIVFDDVDHP--RQIKILVGRLDLFASGSRIIITT-RDR 330 (538)
Q Consensus 261 ~~~l---~~~l~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~iiiTt-R~~ 330 (538)
...- +..+.+. ....+++....+... ..+.+-++|+||++.. .....|+..+....+.+.+|++| +..
T Consensus 91 ~~g~~~n~~~~d~~--s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~ 168 (620)
T PRK14954 91 DAGTSLNISEFDAA--SNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELH 168 (620)
T ss_pred hccCCCCeEEeccc--ccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChh
Confidence 0000 0000000 001122222221111 1234458899999754 44667776666544556655554 333
Q ss_pred hhhhhc-CCCeeEEcCCCCHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhcCCcH
Q 009306 331 QVLANC-GVDEVYQMEELVHDDALRLFSRHAFGGDHPHESHTELACKTIKYARGVPL 386 (538)
Q Consensus 331 ~~~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PL 386 (538)
.+...+ .....+++.+++.++....+.+.+.. .......+.+..+++.++|..-
T Consensus 169 kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~--egi~I~~eal~~La~~s~Gdlr 223 (620)
T PRK14954 169 KIPATIASRCQRFNFKRIPLDEIQSQLQMICRA--EGIQIDADALQLIARKAQGSMR 223 (620)
T ss_pred hhhHHHHhhceEEecCCCCHHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHhCCCHH
Confidence 443332 34578999999999999888876522 1233457788899999999765
No 83
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.47 E-value=1.5e-05 Score=83.37 Aligned_cols=193 Identities=11% Similarity=0.069 Sum_probs=110.4
Q ss_pred CCCCCceeccchhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhccc-----eeeEEEEeehhhhhh--cCCh
Q 009306 185 SENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRH-----FSGSYFARNVREAEE--TCRL 257 (538)
Q Consensus 185 ~~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-----f~~~~~~~~~~~~~~--~~~~ 257 (538)
.....++|.+..++.|...+..+. -.+.+.++|+.|+||||+|+.++..+... .++.. ..++..... ..++
T Consensus 13 ~~f~diiGq~~i~~~L~~~i~~~~-i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~-c~nc~~i~~g~~~d~ 90 (486)
T PRK14953 13 KFFKEVIGQEIVVRILKNAVKLQR-VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGK-CENCVEIDKGSFPDL 90 (486)
T ss_pred CcHHHccChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCc-cHHHHHHhcCCCCcE
Confidence 344678999999999999887542 34567889999999999999999875321 01100 000000000 0000
Q ss_pred HHHHHHHHHHHhcCCCCCCchhhcHHHHHHHh-----cCCCeEEEEecCCCh--HHHHHHhcCcCCCCCCCEEEEec-cc
Q 009306 258 GDLRQQLLSTLLNDGNVKNFLNTDLNFQSRRL-----TRKKVLIVFDDVDHP--RQIKILVGRLDLFASGSRIIITT-RD 329 (538)
Q Consensus 258 ~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~iiiTt-R~ 329 (538)
.. +.... ....+. ...+.+.. .+++-++|+|+++.. .....++..+....+...+|++| +.
T Consensus 91 ~e--------idaas--~~gvd~-ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~~ 159 (486)
T PRK14953 91 IE--------IDAAS--NRGIDD-IRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEY 159 (486)
T ss_pred EE--------EeCcc--CCCHHH-HHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECCH
Confidence 00 00000 011111 11122221 245569999999754 44566666665444455555554 33
Q ss_pred hhhhhhc-CCCeeEEcCCCCHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhcCCcHHHHHHH
Q 009306 330 RQVLANC-GVDEVYQMEELVHDDALRLFSRHAFGGDHPHESHTELACKTIKYARGVPLALEVLG 392 (538)
Q Consensus 330 ~~~~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~ 392 (538)
..+...+ .....+.+.+++.++....+...+-.. ......+.+..+++.++|.+..+..+.
T Consensus 160 ~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~e--gi~id~~al~~La~~s~G~lr~al~~L 221 (486)
T PRK14953 160 DKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEE--KIEYEEKALDLLAQASEGGMRDAASLL 221 (486)
T ss_pred HHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 3333221 234578999999999999888876322 223456778889999999876544443
No 84
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.47 E-value=4.8e-06 Score=86.01 Aligned_cols=162 Identities=19% Similarity=0.190 Sum_probs=96.7
Q ss_pred ceEEEEeccCCCchhHHHHHHHHhhcccee--eEEEEeehhhhhhcCChHHHHHHHHHHHhcCCCCCCchhhcHHHHHHH
Q 009306 211 VYKLGIWGIGGIGKTTIAGAIFNKISRHFS--GSYFARNVREAEETCRLGDLRQQLLSTLLNDGNVKNFLNTDLNFQSRR 288 (538)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~--~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~~ 288 (538)
...+.|+|++|+|||+|++++++.+....+ .++|+. . ..+...+...+... . ...+.+.
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~-~---------~~~~~~~~~~~~~~-----~----~~~~~~~ 196 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS-S---------EKFTNDFVNALRNN-----K----MEEFKEK 196 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE-H---------HHHHHHHHHHHHcC-----C----HHHHHHH
Confidence 456899999999999999999998766542 344443 1 12222333333211 1 1222333
Q ss_pred hcCCCeEEEEecCCCh----HHHHHHhcCcCCC-CCCCEEEEeccch-hhh--------hhcCCCeeEEcCCCCHHHHHH
Q 009306 289 LTRKKVLIVFDDVDHP----RQIKILVGRLDLF-ASGSRIIITTRDR-QVL--------ANCGVDEVYQMEELVHDDALR 354 (538)
Q Consensus 289 l~~k~~LlVlDdv~~~----~~~~~l~~~l~~~-~~~~~iiiTtR~~-~~~--------~~~~~~~~~~l~~L~~~ea~~ 354 (538)
+.+ .-+|+|||++.. ...+.+...+... ..+..+|+|+... ..+ ..+.....+.+++.+.++-.+
T Consensus 197 ~~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~ 275 (405)
T TIGR00362 197 YRS-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLA 275 (405)
T ss_pred HHh-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHH
Confidence 332 348999999642 1122232222111 2355688877542 212 222233578999999999999
Q ss_pred HHHhhhcCCCCCCCchHHHHHHHHHHhcCCcHHHHHHHHH
Q 009306 355 LFSRHAFGGDHPHESHTELACKTIKYARGVPLALEVLGRY 394 (538)
Q Consensus 355 Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~ 394 (538)
++.+.+.. ......++....+++.+.|..-.|+-+...
T Consensus 276 il~~~~~~--~~~~l~~e~l~~ia~~~~~~~r~l~~~l~~ 313 (405)
T TIGR00362 276 ILQKKAEE--EGLELPDEVLEFIAKNIRSNVRELEGALNR 313 (405)
T ss_pred HHHHHHHH--cCCCCCHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 99998732 334456788889999999988765544433
No 85
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.46 E-value=1.8e-06 Score=83.04 Aligned_cols=175 Identities=21% Similarity=0.310 Sum_probs=103.7
Q ss_pred CCCCCceeccchhHH---HHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhhcCChHHHH
Q 009306 185 SENEDLVGVRLPMKE---IESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEETCRLGDLR 261 (538)
Q Consensus 185 ~~~~~~vGR~~~l~~---l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~ 261 (538)
..-.++||.+..+.+ |.+++. .+..+.+.+||++|+||||||+.++..-+.+- ..|+..........++..++
T Consensus 135 ktL~dyvGQ~hlv~q~gllrs~ie--q~~ipSmIlWGppG~GKTtlArlia~tsk~~S--yrfvelSAt~a~t~dvR~if 210 (554)
T KOG2028|consen 135 KTLDDYVGQSHLVGQDGLLRSLIE--QNRIPSMILWGPPGTGKTTLARLIASTSKKHS--YRFVELSATNAKTNDVRDIF 210 (554)
T ss_pred chHHHhcchhhhcCcchHHHHHHH--cCCCCceEEecCCCCchHHHHHHHHhhcCCCc--eEEEEEeccccchHHHHHHH
Confidence 344567777765544 233333 34677899999999999999999998655442 33444221111122222222
Q ss_pred HHHHHHHhcCCCCCCchhhcHHHHHHHhcCCCeEEEEecCC--ChHHHHHHhcCcCCCCCCCEEEE--eccchhh---hh
Q 009306 262 QQLLSTLLNDGNVKNFLNTDLNFQSRRLTRKKVLIVFDDVD--HPRQIKILVGRLDLFASGSRIII--TTRDRQV---LA 334 (538)
Q Consensus 262 ~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~--~~~~~~~l~~~l~~~~~~~~iii--TtR~~~~---~~ 334 (538)
++- .. ...+..++.+|.+|+|. +..|-+.|++.. .+|.-++| ||-++.. ..
T Consensus 211 e~a----q~---------------~~~l~krkTilFiDEiHRFNksQQD~fLP~V---E~G~I~lIGATTENPSFqln~a 268 (554)
T KOG2028|consen 211 EQA----QN---------------EKSLTKRKTILFIDEIHRFNKSQQDTFLPHV---ENGDITLIGATTENPSFQLNAA 268 (554)
T ss_pred HHH----HH---------------HHhhhcceeEEEeHHhhhhhhhhhhccccee---ccCceEEEecccCCCccchhHH
Confidence 221 10 12345788999999995 556677777665 35665555 4555432 12
Q ss_pred hcCCCeeEEcCCCCHHHHHHHHHhhhc---CCCC---C-C----CchHHHHHHHHHHhcCCc
Q 009306 335 NCGVDEVYQMEELVHDDALRLFSRHAF---GGDH---P-H----ESHTELACKTIKYARGVP 385 (538)
Q Consensus 335 ~~~~~~~~~l~~L~~~ea~~Lf~~~~~---~~~~---~-~----~~~~~~~~~i~~~~~G~P 385 (538)
.+....++.|+.|+.++...++.+-.- .... + + ..+..+.+-++..|.|-.
T Consensus 269 LlSRC~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDa 330 (554)
T KOG2028|consen 269 LLSRCRVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDA 330 (554)
T ss_pred HHhccceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchH
Confidence 223456889999999999999887321 1111 1 1 234556677777787765
No 86
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.45 E-value=3.7e-06 Score=87.93 Aligned_cols=161 Identities=16% Similarity=0.150 Sum_probs=97.7
Q ss_pred ceEEEEeccCCCchhHHHHHHHHhhcccee--eEEEEeehhhhhhcCChHHHHHHHHHHHhcCCCCCCchhhcHHHHHHH
Q 009306 211 VYKLGIWGIGGIGKTTIAGAIFNKISRHFS--GSYFARNVREAEETCRLGDLRQQLLSTLLNDGNVKNFLNTDLNFQSRR 288 (538)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~--~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~~ 288 (538)
...+.|+|++|+|||+|++++++.+...++ .++|+. . ..+...+...+... . ...+.+.
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~-~---------~~~~~~~~~~~~~~-----~----~~~~~~~ 208 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVT-S---------EKFTNDFVNALRNN-----T----MEEFKEK 208 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEE-H---------HHHHHHHHHHHHcC-----c----HHHHHHH
Confidence 456899999999999999999998876643 244443 1 12222333332211 1 1223333
Q ss_pred hcCCCeEEEEecCCCh----HHHHHHhcCcCC-CCCCCEEEEeccchh---------hhhhcCCCeeEEcCCCCHHHHHH
Q 009306 289 LTRKKVLIVFDDVDHP----RQIKILVGRLDL-FASGSRIIITTRDRQ---------VLANCGVDEVYQMEELVHDDALR 354 (538)
Q Consensus 289 l~~k~~LlVlDdv~~~----~~~~~l~~~l~~-~~~~~~iiiTtR~~~---------~~~~~~~~~~~~l~~L~~~ea~~ 354 (538)
+. +.-+|+|||++.. ...+.+...+.. ...+..+|+|+.... +...+....++++++++.++-.+
T Consensus 209 ~~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~ 287 (450)
T PRK00149 209 YR-SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIA 287 (450)
T ss_pred Hh-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHH
Confidence 33 3458999999532 112233222111 123556888775431 12233334578999999999999
Q ss_pred HHHhhhcCCCCCCCchHHHHHHHHHHhcCCcHHHHHHHH
Q 009306 355 LFSRHAFGGDHPHESHTELACKTIKYARGVPLALEVLGR 393 (538)
Q Consensus 355 Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~ 393 (538)
++...+-. ......++....|++.+.|..-.|.-+-.
T Consensus 288 il~~~~~~--~~~~l~~e~l~~ia~~~~~~~R~l~~~l~ 324 (450)
T PRK00149 288 ILKKKAEE--EGIDLPDEVLEFIAKNITSNVRELEGALN 324 (450)
T ss_pred HHHHHHHH--cCCCCCHHHHHHHHcCcCCCHHHHHHHHH
Confidence 99998732 23445678899999999998876544433
No 87
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.44 E-value=2.3e-05 Score=82.13 Aligned_cols=195 Identities=12% Similarity=0.080 Sum_probs=113.2
Q ss_pred CCCCCCceeccchhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhccc-eee--EEEEee-hhhhhh--cCCh
Q 009306 184 HSENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRH-FSG--SYFARN-VREAEE--TCRL 257 (538)
Q Consensus 184 ~~~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~--~~~~~~-~~~~~~--~~~~ 257 (538)
|..-..++|-+...+.|...+..+. -.+.+.++|+.|+||||+|+.++..+-.. ... .|..+. +..... ...+
T Consensus 10 P~~fdeiiGqe~v~~~L~~~I~~gr-l~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv 88 (535)
T PRK08451 10 PKHFDELIGQESVSKTLSLALDNNR-LAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDI 88 (535)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeE
Confidence 3445789999999999999887542 35567899999999999999999875321 000 011100 000000 0000
Q ss_pred HHHHHHHHHHHhcCCCCCCchhhcHHHHHHH----hcCCCeEEEEecCCCh--HHHHHHhcCcCCCCCCCEEEEeccch-
Q 009306 258 GDLRQQLLSTLLNDGNVKNFLNTDLNFQSRR----LTRKKVLIVFDDVDHP--RQIKILVGRLDLFASGSRIIITTRDR- 330 (538)
Q Consensus 258 ~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~iiiTtR~~- 330 (538)
.. +... .....++..+.+... ..+++-++|||+++.. +....++..+....+.+++|++|.+.
T Consensus 89 ~e--------ldaa--s~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~ 158 (535)
T PRK08451 89 IE--------MDAA--SNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPL 158 (535)
T ss_pred EE--------eccc--cccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChh
Confidence 00 0000 000111222211110 0134458899999754 45667776666556677777777654
Q ss_pred hhhhhc-CCCeeEEcCCCCHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhcCCcHHHHHH
Q 009306 331 QVLANC-GVDEVYQMEELVHDDALRLFSRHAFGGDHPHESHTELACKTIKYARGVPLALEVL 391 (538)
Q Consensus 331 ~~~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~ 391 (538)
.+...+ .....+++.+++.++..+.+...+-.. ......+.+..+++.++|.+.-+..+
T Consensus 159 kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~E--Gi~i~~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 159 KLPATILSRTQHFRFKQIPQNSIISHLKTILEKE--GVSYEPEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred hCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHcCCcHHHHHHH
Confidence 222211 224688999999999999988766222 22345678889999999998544443
No 88
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.42 E-value=2.7e-06 Score=82.28 Aligned_cols=131 Identities=14% Similarity=0.149 Sum_probs=69.5
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhhccce--eeEEEEeehhhhhhcCChHHHHHHHHHHHhcCCCCCCchhhcHHHHHH
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKISRHF--SGSYFARNVREAEETCRLGDLRQQLLSTLLNDGNVKNFLNTDLNFQSR 287 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f--~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~ 287 (538)
....+.++|++|+||||+|+.++..+.... ....++.. ....+ .....+ .........+.
T Consensus 41 ~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~--------~~~~l----~~~~~g-----~~~~~~~~~~~- 102 (261)
T TIGR02881 41 QVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEV--------ERADL----VGEYIG-----HTAQKTREVIK- 102 (261)
T ss_pred CcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEe--------cHHHh----hhhhcc-----chHHHHHHHHH-
Confidence 345688999999999999999988653211 11112210 00011 111100 00011111111
Q ss_pred HhcCCCeEEEEecCCC----------hHHHHHHhcCcCCCCCCCEEEEeccchhh---h---hhc--CCCeeEEcCCCCH
Q 009306 288 RLTRKKVLIVFDDVDH----------PRQIKILVGRLDLFASGSRIIITTRDRQV---L---ANC--GVDEVYQMEELVH 349 (538)
Q Consensus 288 ~l~~k~~LlVlDdv~~----------~~~~~~l~~~l~~~~~~~~iiiTtR~~~~---~---~~~--~~~~~~~l~~L~~ 349 (538)
. ...-+|+||+++. .+.++.++..+........+|+++..... . +.+ .....+.+++++.
T Consensus 103 ~--a~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~ 180 (261)
T TIGR02881 103 K--ALGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTV 180 (261)
T ss_pred h--ccCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHHHhccceEEEECCCCH
Confidence 1 1235889999974 23456666555433334455555543221 0 011 1234688999999
Q ss_pred HHHHHHHHhhh
Q 009306 350 DDALRLFSRHA 360 (538)
Q Consensus 350 ~ea~~Lf~~~~ 360 (538)
+|..+++.+.+
T Consensus 181 ~el~~Il~~~~ 191 (261)
T TIGR02881 181 EELMEIAERMV 191 (261)
T ss_pred HHHHHHHHHHH
Confidence 99999998776
No 89
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.41 E-value=4.4e-06 Score=93.27 Aligned_cols=194 Identities=13% Similarity=0.130 Sum_probs=105.9
Q ss_pred HHHHHHHhhhccccccCCCCCCCceeccchhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhccce------e
Q 009306 167 LIEEIVNAILKRLDDTFHSENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHF------S 240 (538)
Q Consensus 167 ~i~~i~~~~~~~~~~~~~~~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f------~ 240 (538)
.+++...++..... +..-+.++||+.++..+...|.... ..-+.|+|++|+|||++|..++.++.... .
T Consensus 169 ~l~~~~~~L~~~~r---~~~ld~~iGr~~ei~~~i~~l~r~~--~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~ 243 (852)
T TIGR03345 169 ALDQYTTDLTAQAR---EGKIDPVLGRDDEIRQMIDILLRRR--QNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRN 243 (852)
T ss_pred hHHHHhhhHHHHhc---CCCCCcccCCHHHHHHHHHHHhcCC--cCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccC
Confidence 44444444433332 2344789999999999999887532 23467999999999999999999875431 1
Q ss_pred eEEEEeehhhhhhcCChHHHHHHHHHHHhcCCCCCCchhhcHHHHHHHh--cCCCeEEEEecCCChH-------HHH---
Q 009306 241 GSYFARNVREAEETCRLGDLRQQLLSTLLNDGNVKNFLNTDLNFQSRRL--TRKKVLIVFDDVDHPR-------QIK--- 308 (538)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~~l--~~k~~LlVlDdv~~~~-------~~~--- 308 (538)
..+|..+.......... ....+..+..+.+.+ .+++++|+||+++... +.+
T Consensus 244 ~~i~~l~l~~l~ag~~~-----------------~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n 306 (852)
T TIGR03345 244 VRLLSLDLGLLQAGASV-----------------KGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAAN 306 (852)
T ss_pred CeEEEeehhhhhccccc-----------------chHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHH
Confidence 22332222111000000 001111111111111 2468999999985431 111
Q ss_pred HHhcCcCCCCCCCEEEEeccchhhhhh-------cCCCeeEEcCCCCHHHHHHHHHhhhcC--CCCCCCchHHHHHHHHH
Q 009306 309 ILVGRLDLFASGSRIIITTRDRQVLAN-------CGVDEVYQMEELVHDDALRLFSRHAFG--GDHPHESHTELACKTIK 379 (538)
Q Consensus 309 ~l~~~l~~~~~~~~iiiTtR~~~~~~~-------~~~~~~~~l~~L~~~ea~~Lf~~~~~~--~~~~~~~~~~~~~~i~~ 379 (538)
.+.+.+. ....++|-+|.....-+. ....+.+.+++++.++..+++....-. ....-....+....+++
T Consensus 307 ~Lkp~l~--~G~l~~IgaTT~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ 384 (852)
T TIGR03345 307 LLKPALA--RGELRTIAATTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVE 384 (852)
T ss_pred HhhHHhh--CCCeEEEEecCHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHH
Confidence 2334432 234566666654322111 123368999999999999997544311 11122334566666777
Q ss_pred HhcCC
Q 009306 380 YARGV 384 (538)
Q Consensus 380 ~~~G~ 384 (538)
.+.++
T Consensus 385 ls~ry 389 (852)
T TIGR03345 385 LSHRY 389 (852)
T ss_pred Hcccc
Confidence 77654
No 90
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.40 E-value=4.6e-06 Score=92.29 Aligned_cols=193 Identities=12% Similarity=0.143 Sum_probs=104.6
Q ss_pred HHHHHHHhhhccccccCCCCCCCceeccchhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhccc-----e-e
Q 009306 167 LIEEIVNAILKRLDDTFHSENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRH-----F-S 240 (538)
Q Consensus 167 ~i~~i~~~~~~~~~~~~~~~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-----f-~ 240 (538)
.+++...++..... +..-+.++||+.++..+.+.|.... ..-+.++|++|+|||++|+.++.++... + .
T Consensus 164 ~l~~~~~~l~~~~r---~~~l~~~igr~~ei~~~~~~L~~~~--~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~ 238 (731)
T TIGR02639 164 ALEKYTVDLTEKAK---NGKIDPLIGREDELERTIQVLCRRK--KNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKN 238 (731)
T ss_pred HHHHHhhhHHHHHh---cCCCCcccCcHHHHHHHHHHHhcCC--CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcC
Confidence 34444444433332 2334679999999999999887542 3347899999999999999999987432 1 2
Q ss_pred eEEEEeehhhhhhcCChHHHHHHHHHHHhcCCCCCCchhhcHHHHHHHh-cCCCeEEEEecCCCh-----------HHHH
Q 009306 241 GSYFARNVREAEETCRLGDLRQQLLSTLLNDGNVKNFLNTDLNFQSRRL-TRKKVLIVFDDVDHP-----------RQIK 308 (538)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~-----------~~~~ 308 (538)
..+|..+... +... .. .....+.....+.+.+ ..++.+|+||+++.. +...
T Consensus 239 ~~~~~~~~~~---------l~a~-------~~-~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~ 301 (731)
T TIGR02639 239 AKIYSLDMGS---------LLAG-------TK-YRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASN 301 (731)
T ss_pred CeEEEecHHH---------Hhhh-------cc-ccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHH
Confidence 3344332111 1100 00 0011122222222222 246789999998632 1223
Q ss_pred HHhcCcCCCCCCCEEEEeccchhhhhh-------cCCCeeEEcCCCCHHHHHHHHHhhhcC--CCCCCCchHHHHHHHHH
Q 009306 309 ILVGRLDLFASGSRIIITTRDRQVLAN-------CGVDEVYQMEELVHDDALRLFSRHAFG--GDHPHESHTELACKTIK 379 (538)
Q Consensus 309 ~l~~~l~~~~~~~~iiiTtR~~~~~~~-------~~~~~~~~l~~L~~~ea~~Lf~~~~~~--~~~~~~~~~~~~~~i~~ 379 (538)
.+.+.+. ....++|-+|....+-.. ......+++++++.++..+++....-. .........+....+++
T Consensus 302 ~L~~~l~--~g~i~~IgaTt~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ 379 (731)
T TIGR02639 302 LLKPALS--SGKLRCIGSTTYEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVE 379 (731)
T ss_pred HHHHHHh--CCCeEEEEecCHHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHH
Confidence 3444433 223455555543221111 112357899999999999999865421 11122334555556665
Q ss_pred HhcC
Q 009306 380 YARG 383 (538)
Q Consensus 380 ~~~G 383 (538)
.++.
T Consensus 380 ls~r 383 (731)
T TIGR02639 380 LSAR 383 (731)
T ss_pred hhhc
Confidence 5543
No 91
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.39 E-value=1.1e-05 Score=86.87 Aligned_cols=196 Identities=13% Similarity=0.123 Sum_probs=111.1
Q ss_pred CCCCCCceeccchhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhh----cCChHH
Q 009306 184 HSENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEE----TCRLGD 259 (538)
Q Consensus 184 ~~~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~----~~~~~~ 259 (538)
|.....++|.+..++.|...+..+. -.+.+.++|+.|+||||+|+.++..+-.......+-. +..+.. ...+..
T Consensus 14 P~~f~dIiGQe~~v~~L~~aI~~~r-l~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~p-C~~C~~~~~~~~Dvie 91 (725)
T PRK07133 14 PKTFDDIVGQDHIVQTLKNIIKSNK-ISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEP-CQECIENVNNSLDIIE 91 (725)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCc-hhHHHHhhcCCCcEEE
Confidence 3445778999999999999887542 3556789999999999999999987532111000000 000000 000000
Q ss_pred HHHHHHHHHhcCCCCC-CchhhcHHHHHHH-hcCCCeEEEEecCCCh--HHHHHHhcCcCCCCCCCEEEEec-cchhhhh
Q 009306 260 LRQQLLSTLLNDGNVK-NFLNTDLNFQSRR-LTRKKVLIVFDDVDHP--RQIKILVGRLDLFASGSRIIITT-RDRQVLA 334 (538)
Q Consensus 260 l~~~l~~~l~~~~~~~-~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~iiiTt-R~~~~~~ 334 (538)
+....... ..++++...+... ..+++-++|+|+++.. .....|+..+........+|++| ....+..
T Consensus 92 --------idaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~ 163 (725)
T PRK07133 92 --------MDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPL 163 (725)
T ss_pred --------EeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhH
Confidence 00000000 0111111111111 1245569999999743 45667776666545555555544 4444433
Q ss_pred hc-CCCeeEEcCCCCHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhcCCcH-HHHHH
Q 009306 335 NC-GVDEVYQMEELVHDDALRLFSRHAFGGDHPHESHTELACKTIKYARGVPL-ALEVL 391 (538)
Q Consensus 335 ~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PL-al~~~ 391 (538)
.+ .....+++.+++.++..+.+...+-.. ......+.+..+++.++|.+. |+..+
T Consensus 164 TI~SRcq~ieF~~L~~eeI~~~L~~il~ke--gI~id~eAl~~LA~lS~GslR~AlslL 220 (725)
T PRK07133 164 TILSRVQRFNFRRISEDEIVSRLEFILEKE--NISYEKNALKLIAKLSSGSLRDALSIA 220 (725)
T ss_pred HHHhhceeEEccCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 32 234689999999999999888765221 223445678889999999774 44433
No 92
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.38 E-value=1.3e-05 Score=80.00 Aligned_cols=172 Identities=16% Similarity=0.226 Sum_probs=107.4
Q ss_pred CCCCCceeccchhHHHHHhhhc--CCCCceEEEEeccCCCchhHHHHHHHHhhccceee--EEEEeehhhhhhcCChHHH
Q 009306 185 SENEDLVGVRLPMKEIESLLRT--GSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSG--SYFARNVREAEETCRLGDL 260 (538)
Q Consensus 185 ~~~~~~vGR~~~l~~l~~~L~~--~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~--~~~~~~~~~~~~~~~~~~l 260 (538)
..+..++||+.++..+.+++.. ..+....+-|.|-+|.|||.+...++......... .+++.+.. -.....+
T Consensus 147 ~~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~s----l~~~~ai 222 (529)
T KOG2227|consen 147 APPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTS----LTEASAI 222 (529)
T ss_pred CCCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeecc----ccchHHH
Confidence 3457899999999999998865 33456678999999999999999998877665543 46665322 2344556
Q ss_pred HHHHHHHHhcCCCCCCchhhcHHHHHHHhcC--CCeEEEEecCCChHH--HHHHhcCcCCC-CCCCEEEEeccch-----
Q 009306 261 RQQLLSTLLNDGNVKNFLNTDLNFQSRRLTR--KKVLIVFDDVDHPRQ--IKILVGRLDLF-ASGSRIIITTRDR----- 330 (538)
Q Consensus 261 ~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~--k~~LlVlDdv~~~~~--~~~l~~~l~~~-~~~~~iiiTtR~~----- 330 (538)
+..+++.+...........+....+.+...+ ..+|+|+|+.|.... -..+...+.|- -+++++|+.--..
T Consensus 223 F~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlT 302 (529)
T KOG2227|consen 223 FKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLT 302 (529)
T ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHH
Confidence 6666666633333332224444445444433 368999999976532 11111111111 2466655443221
Q ss_pred -hhhhhcC-----CCeeEEcCCCCHHHHHHHHHhhh
Q 009306 331 -QVLANCG-----VDEVYQMEELVHDDALRLFSRHA 360 (538)
Q Consensus 331 -~~~~~~~-----~~~~~~l~~L~~~ea~~Lf~~~~ 360 (538)
..+..+. ....+..+|.+.++..++|..+.
T Consensus 303 dR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl 338 (529)
T KOG2227|consen 303 DRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRL 338 (529)
T ss_pred HHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHH
Confidence 2222222 23578899999999999999998
No 93
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=98.36 E-value=1.2e-05 Score=84.96 Aligned_cols=161 Identities=12% Similarity=0.157 Sum_probs=96.9
Q ss_pred ceEEEEeccCCCchhHHHHHHHHhhccce--eeEEEEeehhhhhhcCChHHHHHHHHHHHhcCCCCCCchhhcHHHHHHH
Q 009306 211 VYKLGIWGIGGIGKTTIAGAIFNKISRHF--SGSYFARNVREAEETCRLGDLRQQLLSTLLNDGNVKNFLNTDLNFQSRR 288 (538)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f--~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~~ 288 (538)
...+.|+|..|+|||.|+.++++.....+ ..++|+. ...+...+...+... ....+++.
T Consensus 314 ~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yit----------aeef~~el~~al~~~---------~~~~f~~~ 374 (617)
T PRK14086 314 YNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVS----------SEEFTNEFINSIRDG---------KGDSFRRR 374 (617)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee----------HHHHHHHHHHHHHhc---------cHHHHHHH
Confidence 34589999999999999999999876533 2344544 222333333332211 11223333
Q ss_pred hcCCCeEEEEecCCCh----HHHHHHhcCcCC-CCCCCEEEEeccch---------hhhhhcCCCeeEEcCCCCHHHHHH
Q 009306 289 LTRKKVLIVFDDVDHP----RQIKILVGRLDL-FASGSRIIITTRDR---------QVLANCGVDEVYQMEELVHDDALR 354 (538)
Q Consensus 289 l~~k~~LlVlDdv~~~----~~~~~l~~~l~~-~~~~~~iiiTtR~~---------~~~~~~~~~~~~~l~~L~~~ea~~ 354 (538)
+. +.-+|||||++.. ..-+.|+..+.. ...+..|||||... .+...+....+++|.+.+.+.-.+
T Consensus 375 y~-~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~a 453 (617)
T PRK14086 375 YR-EMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIA 453 (617)
T ss_pred hh-cCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHH
Confidence 33 2358899999532 111223222211 13456788888653 222333445688999999999999
Q ss_pred HHHhhhcCCCCCCCchHHHHHHHHHHhcCCcHHHHHHHH
Q 009306 355 LFSRHAFGGDHPHESHTELACKTIKYARGVPLALEVLGR 393 (538)
Q Consensus 355 Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~ 393 (538)
++.+++. .......++++.-|++.+.++.-.|.-+..
T Consensus 454 IL~kka~--~r~l~l~~eVi~yLa~r~~rnvR~LegaL~ 490 (617)
T PRK14086 454 ILRKKAV--QEQLNAPPEVLEFIASRISRNIRELEGALI 490 (617)
T ss_pred HHHHHHH--hcCCCCCHHHHHHHHHhccCCHHHHHHHHH
Confidence 9998873 233455678888888888877655544433
No 94
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.36 E-value=2.9e-05 Score=82.57 Aligned_cols=194 Identities=10% Similarity=0.077 Sum_probs=113.4
Q ss_pred CCCCCCceeccchhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhccc-----eeeEEEEeehhhhhhcCChH
Q 009306 184 HSENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRH-----FSGSYFARNVREAEETCRLG 258 (538)
Q Consensus 184 ~~~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-----f~~~~~~~~~~~~~~~~~~~ 258 (538)
|..-..++|-+..++.|...+..+ .-.+.+.++|+.|+||||+|+.++..+-.. .++.. ...+........+.
T Consensus 12 P~~f~diiGqe~iv~~L~~~i~~~-~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~-C~~C~~i~~~~~~d 89 (563)
T PRK06647 12 PRDFNSLEGQDFVVETLKHSIESN-KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGE-CSSCKSIDNDNSLD 89 (563)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCcc-chHHHHHHcCCCCC
Confidence 344578999999999999998754 235678899999999999999999875421 01100 00000000000000
Q ss_pred HHHHHHHHHHhcCCCCCCchhhcHHHH---HH-HhcCCCeEEEEecCCCh--HHHHHHhcCcCCCCCCCEEEEeccch-h
Q 009306 259 DLRQQLLSTLLNDGNVKNFLNTDLNFQ---SR-RLTRKKVLIVFDDVDHP--RQIKILVGRLDLFASGSRIIITTRDR-Q 331 (538)
Q Consensus 259 ~l~~~l~~~l~~~~~~~~~~~~~~~~l---~~-~l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~iiiTtR~~-~ 331 (538)
+. .+.+. .....++..... .. -..+++-++|+|+++.. .....++..+....+...+|++|.+. .
T Consensus 90 -v~-----~idga--s~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~k 161 (563)
T PRK06647 90 -VI-----EIDGA--SNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHK 161 (563)
T ss_pred -eE-----EecCc--ccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHH
Confidence 00 00000 001112211111 11 11345568999999654 45677777776555666666666443 3
Q ss_pred hhhhc-CCCeeEEcCCCCHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhcCCcHHHH
Q 009306 332 VLANC-GVDEVYQMEELVHDDALRLFSRHAFGGDHPHESHTELACKTIKYARGVPLALE 389 (538)
Q Consensus 332 ~~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~ 389 (538)
+...+ .....+++.+++.++..+.+...+... ......+.+..+++.++|.+..+.
T Consensus 162 L~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~e--gi~id~eAl~lLa~~s~GdlR~al 218 (563)
T PRK06647 162 LPATIKSRCQHFNFRLLSLEKIYNMLKKVCLED--QIKYEDEALKWIAYKSTGSVRDAY 218 (563)
T ss_pred hHHHHHHhceEEEecCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHcCCCHHHHH
Confidence 33222 224578999999999999888776332 233457788889999999885443
No 95
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.35 E-value=1.9e-05 Score=81.96 Aligned_cols=198 Identities=12% Similarity=0.102 Sum_probs=110.5
Q ss_pred CCCCCceeccchhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhcccee----eEEEEe-ehhhhhhcCChHH
Q 009306 185 SENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFS----GSYFAR-NVREAEETCRLGD 259 (538)
Q Consensus 185 ~~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~----~~~~~~-~~~~~~~~~~~~~ 259 (538)
..-.+++|.+..++.|...+..+. -.+.+.++|++|+||||+|+.++..+-..-. ..|-.+ ++..........
T Consensus 14 ~~~~diiGq~~~v~~L~~~i~~~~-i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d- 91 (451)
T PRK06305 14 QTFSEILGQDAVVAVLKNALRFNR-AAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD- 91 (451)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-CceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc-
Confidence 344789999999999999887532 2456889999999999999999987543200 000000 000000000000
Q ss_pred HHHHHHHHHhcCCCCC-CchhhcHHHHHH-HhcCCCeEEEEecCCCh--HHHHHHhcCcCCCCCCCEEEEeccc-hhhhh
Q 009306 260 LRQQLLSTLLNDGNVK-NFLNTDLNFQSR-RLTRKKVLIVFDDVDHP--RQIKILVGRLDLFASGSRIIITTRD-RQVLA 334 (538)
Q Consensus 260 l~~~l~~~l~~~~~~~-~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~iiiTtR~-~~~~~ 334 (538)
+ ..+.+..... ..+......+.. .....+-++|+|+++.. .....+...+....++..+|++|.+ ..+..
T Consensus 92 ~-----~~i~g~~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~~~kl~~ 166 (451)
T PRK06305 92 V-----LEIDGASHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHKIPG 166 (451)
T ss_pred e-----EEeeccccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCChHhcch
Confidence 0 0000000000 011111111110 01245668999999744 4456666665544456666666643 33322
Q ss_pred hc-CCCeeEEcCCCCHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhcCCcH-HHHHH
Q 009306 335 NC-GVDEVYQMEELVHDDALRLFSRHAFGGDHPHESHTELACKTIKYARGVPL-ALEVL 391 (538)
Q Consensus 335 ~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PL-al~~~ 391 (538)
.+ .....+++.+++.++..+.+...+-. .......+.+..+++.++|.+. ++..+
T Consensus 167 tI~sRc~~v~f~~l~~~el~~~L~~~~~~--eg~~i~~~al~~L~~~s~gdlr~a~~~L 223 (451)
T PRK06305 167 TILSRCQKMHLKRIPEETIIDKLALIAKQ--EGIETSREALLPIARAAQGSLRDAESLY 223 (451)
T ss_pred HHHHhceEEeCCCCCHHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 22 23467899999999999988876522 2233457788899999999874 44433
No 96
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.35 E-value=2.6e-05 Score=80.74 Aligned_cols=153 Identities=12% Similarity=0.123 Sum_probs=90.4
Q ss_pred ceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhhcCChHHHHHHHHHHHhcCCCCCCchhhcHHHHHHHhc
Q 009306 211 VYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEETCRLGDLRQQLLSTLLNDGNVKNFLNTDLNFQSRRLT 290 (538)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~ 290 (538)
...+.|+|++|+|||+|++++++.+......+.|+. ...+...+...+... . ...++..+
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~----------~~~f~~~~~~~l~~~-----~----~~~f~~~~- 200 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVR----------SELFTEHLVSAIRSG-----E----MQRFRQFY- 200 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEee----------HHHHHHHHHHHHhcc-----h----HHHHHHHc-
Confidence 356899999999999999999998765444455554 112222333333211 1 12233333
Q ss_pred CCCeEEEEecCCCh----HHHHHHhcCcCC-CCCCCEEEEeccc-hh--------hhhhcCCCeeEEcCCCCHHHHHHHH
Q 009306 291 RKKVLIVFDDVDHP----RQIKILVGRLDL-FASGSRIIITTRD-RQ--------VLANCGVDEVYQMEELVHDDALRLF 356 (538)
Q Consensus 291 ~k~~LlVlDdv~~~----~~~~~l~~~l~~-~~~~~~iiiTtR~-~~--------~~~~~~~~~~~~l~~L~~~ea~~Lf 356 (538)
...-+|+|||++.. ...+.+...+.. ...+..||+||.. +. +...+.....+.+.+++.++..+++
T Consensus 201 ~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL 280 (445)
T PRK12422 201 RNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFL 280 (445)
T ss_pred ccCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHH
Confidence 34458899998532 112222222110 1245678888854 21 1222333468899999999999999
Q ss_pred HhhhcCCCCCCCchHHHHHHHHHHhcCCc
Q 009306 357 SRHAFGGDHPHESHTELACKTIKYARGVP 385 (538)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 385 (538)
.+.+-. ......++...-+++.+.|+-
T Consensus 281 ~~k~~~--~~~~l~~evl~~la~~~~~di 307 (445)
T PRK12422 281 ERKAEA--LSIRIEETALDFLIEALSSNV 307 (445)
T ss_pred HHHHHH--cCCCCCHHHHHHHHHhcCCCH
Confidence 988732 223455677777877777664
No 97
>PF08937 DUF1863: MTH538 TIR-like domain (DUF1863); InterPro: IPR015032 This protein adopts the flavodoxin fold, that is, five parallel beta-strands and four helical segments. The structure is a three-layer sandwich with alpha-1 and alpha-4 on one side of the beta-sheet, and alpha-2 and alpha-3 on the other side. Probable role in signal transduction as a phosphorylation-independent conformational switch protein []. This domain is similar to the TIR domain [].; PDB: 3HYN_A.
Probab=98.35 E-value=8.9e-07 Score=75.70 Aligned_cols=89 Identities=22% Similarity=0.412 Sum_probs=47.8
Q ss_pred ccEEEcCcccccccchHHHHHHHHhhC-------CCee-Ee---------eC-CCCCCCcchHHHHHHHHhcceEEEEec
Q 009306 18 YDVFLSFGGEDTRESFTSHLYSALSRE-------TVET-FI---------DD-DLRRGDEISQSLLDAIEASSISIIIFS 79 (538)
Q Consensus 18 ~dvFiSy~~~D~~~~~~~~l~~~l~~~-------g~~~-~~---------d~-~~~~g~~~~~~i~~~i~~s~~~i~v~S 79 (538)
|+|||||++.|.. ..+..|...+... .+.. |. +. +....+.|...|.+.|.+|+++|+++|
T Consensus 1 ~~vFIS~~~~d~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~I~~~i~~s~~~IVLig 79 (130)
T PF08937_consen 1 YKVFISYSHDDDD-WYYDQLKEWLENSYEIPRDKNFDFRFYDVSKWEPIRSRDDDSSSEYIKRKIRERIKNSSVTIVLIG 79 (130)
T ss_dssp ----------THH--HHHHHHHHHHH-------TTSS--BT---TTT---TTS---TTTTHHHHHHHHHHTEEEEEEE--
T ss_pred CCccccccccCcH-HHHHHHHHHhccccccccccccccCcccccccCcccCccccchHHHHHHHHHHHHhcCCEEEEEeC
Confidence 5799999999933 3777777777663 2211 11 11 222345789999999999999999999
Q ss_pred cCcccchhhHHHHHHHHHHHhhcCCeEEEEEE
Q 009306 80 ESYASSRWCLDELLKILECKKEYAQIVVPVFY 111 (538)
Q Consensus 80 ~~y~~s~~c~~El~~~~~~~~~~~~~v~pv~~ 111 (538)
++-..|.|+..|+..+++ .+.+|+-|.+
T Consensus 80 ~~T~~s~wV~~EI~~A~~----~~~~Ii~V~~ 107 (130)
T PF08937_consen 80 PNTAKSKWVNWEIEYALK----KGKPIIGVYL 107 (130)
T ss_dssp TT----HHHHHHHHHHTT----T---EEEEET
T ss_pred CCcccCcHHHHHHHHHHH----CCCCEEEEEC
Confidence 999999999999998886 3455666653
No 98
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.33 E-value=5.5e-05 Score=81.44 Aligned_cols=191 Identities=16% Similarity=0.118 Sum_probs=110.1
Q ss_pred CCCCCceeccchhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhccceee----EEEEe-ehhhhhhc--CCh
Q 009306 185 SENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSG----SYFAR-NVREAEET--CRL 257 (538)
Q Consensus 185 ~~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~----~~~~~-~~~~~~~~--~~~ 257 (538)
..-..++|.+..++.|...+..+. -.+.+.++|+.|+||||+|+.++..+-..... .|-.+ .+...... ..+
T Consensus 14 ~~f~~viGq~~~~~~L~~~i~~~~-l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~ 92 (614)
T PRK14971 14 STFESVVGQEALTTTLKNAIATNK-LAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNI 92 (614)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCce
Confidence 344789999999999999887532 34568899999999999999998865311000 00000 00000000 000
Q ss_pred HHHHHHHHHHHhcCCCCCCchhhcHHHHHHH----hcCCCeEEEEecCCCh--HHHHHHhcCcCCCCCCCEEEEec-cch
Q 009306 258 GDLRQQLLSTLLNDGNVKNFLNTDLNFQSRR----LTRKKVLIVFDDVDHP--RQIKILVGRLDLFASGSRIIITT-RDR 330 (538)
Q Consensus 258 ~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~iiiTt-R~~ 330 (538)
.. +... .....++....+.+. ..+++-++|||+++.. .....|+..+.....++.+|++| ...
T Consensus 93 ~~--------ld~~--~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~~~ 162 (614)
T PRK14971 93 HE--------LDAA--SNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKH 162 (614)
T ss_pred EE--------eccc--ccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCCch
Confidence 00 0000 001111111111110 1234458899999754 45677777666545566665554 444
Q ss_pred hhhhhc-CCCeeEEcCCCCHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhcCCcHHH
Q 009306 331 QVLANC-GVDEVYQMEELVHDDALRLFSRHAFGGDHPHESHTELACKTIKYARGVPLAL 388 (538)
Q Consensus 331 ~~~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal 388 (538)
.+...+ .....+++.+++.++....+.+.+... .-....+.+..+++.++|...-+
T Consensus 163 kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~e--gi~i~~~al~~La~~s~gdlr~a 219 (614)
T PRK14971 163 KILPTILSRCQIFDFNRIQVADIVNHLQYVASKE--GITAEPEALNVIAQKADGGMRDA 219 (614)
T ss_pred hchHHHHhhhheeecCCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHcCCCHHHH
Confidence 444332 234689999999999999998766222 23345667889999999977543
No 99
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.31 E-value=7e-05 Score=80.63 Aligned_cols=196 Identities=16% Similarity=0.136 Sum_probs=110.4
Q ss_pred CCCCCceeccchhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhhcCChHHHHHHH
Q 009306 185 SENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEETCRLGDLRQQL 264 (538)
Q Consensus 185 ~~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l 264 (538)
.....++|.+..++.|..++..+. -.+.+.++|+.|+||||+|+.++..+-.......-. ...+.-...+.+
T Consensus 13 ~~f~~liGq~~i~~~L~~~l~~~r-l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~-------~~Cg~C~~C~~i 84 (620)
T PRK14948 13 QRFDELVGQEAIATTLKNALISNR-IAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTP-------EPCGKCELCRAI 84 (620)
T ss_pred CcHhhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCC-------CCCcccHHHHHH
Confidence 344678999999999999887542 235688999999999999999998764321000000 000000011111
Q ss_pred HHHHhc-----CCCCCCchhhcHHHHHHHh-----cCCCeEEEEecCCCh--HHHHHHhcCcCCCCCCCEEEEeccc-hh
Q 009306 265 LSTLLN-----DGNVKNFLNTDLNFQSRRL-----TRKKVLIVFDDVDHP--RQIKILVGRLDLFASGSRIIITTRD-RQ 331 (538)
Q Consensus 265 ~~~l~~-----~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~iiiTtR~-~~ 331 (538)
...... .......++...+.+ +.+ .+++-++|||+++.. +....|+..+........+|++|.+ ..
T Consensus 85 ~~g~h~D~~ei~~~~~~~vd~IReii-~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~ 163 (620)
T PRK14948 85 AAGNALDVIEIDAASNTGVDNIRELI-ERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQR 163 (620)
T ss_pred hcCCCccEEEEeccccCCHHHHHHHH-HHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhh
Confidence 100000 000001111111111 111 234458999999754 4566777666544445555555443 33
Q ss_pred hhhhc-CCCeeEEcCCCCHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhcCCcHHHHHH
Q 009306 332 VLANC-GVDEVYQMEELVHDDALRLFSRHAFGGDHPHESHTELACKTIKYARGVPLALEVL 391 (538)
Q Consensus 332 ~~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~ 391 (538)
++..+ .....+++.+++.++....+...+.. .......+.+..+++.++|.+..+..+
T Consensus 164 llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~k--egi~is~~al~~La~~s~G~lr~A~~l 222 (620)
T PRK14948 164 VLPTIISRCQRFDFRRIPLEAMVQHLSEIAEK--ESIEIEPEALTLVAQRSQGGLRDAESL 222 (620)
T ss_pred hhHHHHhheeEEEecCCCHHHHHHHHHHHHHH--hCCCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 33332 23467889999999998888776522 122344567889999999988654433
No 100
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.29 E-value=2.5e-05 Score=83.70 Aligned_cols=198 Identities=13% Similarity=0.095 Sum_probs=110.5
Q ss_pred CCCCCceeccchhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhcccee---eEEEEe-ehhhhhhcCChHHH
Q 009306 185 SENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFS---GSYFAR-NVREAEETCRLGDL 260 (538)
Q Consensus 185 ~~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~---~~~~~~-~~~~~~~~~~~~~l 260 (538)
....+++|.+..++.|...+..+ .-...+.++|+.|+||||+|+.++..+-..-. ..|-.+ .+.......... +
T Consensus 13 ~~f~~iiGq~~v~~~L~~~i~~~-~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d-~ 90 (576)
T PRK14965 13 QTFSDLTGQEHVSRTLQNAIDTG-RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVD-V 90 (576)
T ss_pred CCHHHccCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCC-e
Confidence 44578999999999999988753 23456789999999999999999987532100 000000 000000000000 0
Q ss_pred HHHHHHHHhcCCCCC-CchhhcHHHHHHH-hcCCCeEEEEecCCCh--HHHHHHhcCcCCCCCCCEEEEeccc-hhhhhh
Q 009306 261 RQQLLSTLLNDGNVK-NFLNTDLNFQSRR-LTRKKVLIVFDDVDHP--RQIKILVGRLDLFASGSRIIITTRD-RQVLAN 335 (538)
Q Consensus 261 ~~~l~~~l~~~~~~~-~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~iiiTtR~-~~~~~~ 335 (538)
. .+.+..... .++.++...+... ...+.-++|||+++.. .....|+..+....++..+|++|.+ ..+...
T Consensus 91 ~-----eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~t 165 (576)
T PRK14965 91 F-----EIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPIT 165 (576)
T ss_pred e-----eeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHH
Confidence 0 000000000 1111111111110 1234458899999754 4566777666654566666655543 334333
Q ss_pred c-CCCeeEEcCCCCHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhcCCc-HHHHHH
Q 009306 336 C-GVDEVYQMEELVHDDALRLFSRHAFGGDHPHESHTELACKTIKYARGVP-LALEVL 391 (538)
Q Consensus 336 ~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~P-Lal~~~ 391 (538)
+ .....+++.+++.++....+...+-. .......+.+..+++.++|.. .++..+
T Consensus 166 I~SRc~~~~f~~l~~~~i~~~L~~i~~~--egi~i~~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 166 ILSRCQRFDFRRIPLQKIVDRLRYIADQ--EGISISDAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred HHHhhhhhhcCCCCHHHHHHHHHHHHHH--hCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 2 23457889999999999888776522 223345677888999999976 455444
No 101
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=98.28 E-value=3.3e-05 Score=82.42 Aligned_cols=190 Identities=14% Similarity=0.072 Sum_probs=108.6
Q ss_pred CCCCCCceeccchhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhcccee---eEEEEe-ehhhhhhc--CCh
Q 009306 184 HSENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFS---GSYFAR-NVREAEET--CRL 257 (538)
Q Consensus 184 ~~~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~---~~~~~~-~~~~~~~~--~~~ 257 (538)
|.....++|.+..++.|...+..+. -.+.+.++|+.|+||||+|+.++..+-..-. ..|-.+ .+...... .++
T Consensus 12 P~~f~~viGq~~v~~~L~~~i~~~~-~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~~g~~~dv 90 (559)
T PRK05563 12 PQTFEDVVGQEHITKTLKNAIKQGK-ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAITNGSLMDV 90 (559)
T ss_pred CCcHHhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCCCCCe
Confidence 3445789999999999999987543 3566788999999999999999986532110 000000 00000000 000
Q ss_pred HHHHHHHHHHHhcCCCCCCchhhcHHHHHHH-----hcCCCeEEEEecCCCh--HHHHHHhcCcCCCCCCCEEEEec-cc
Q 009306 258 GDLRQQLLSTLLNDGNVKNFLNTDLNFQSRR-----LTRKKVLIVFDDVDHP--RQIKILVGRLDLFASGSRIIITT-RD 329 (538)
Q Consensus 258 ~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~iiiTt-R~ 329 (538)
.. +.... ....++.. .+.+. ..++.-++|||+++.. .....++..+.....+..+|++| ..
T Consensus 91 ~e--------idaas--~~~vd~ir-~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~ 159 (559)
T PRK05563 91 IE--------IDAAS--NNGVDEIR-DIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEP 159 (559)
T ss_pred EE--------eeccc--cCCHHHHH-HHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCCh
Confidence 00 00000 01111111 11111 1245568899999754 45667776665444555555544 33
Q ss_pred hhhhhhc-CCCeeEEcCCCCHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhcCCcHH
Q 009306 330 RQVLANC-GVDEVYQMEELVHDDALRLFSRHAFGGDHPHESHTELACKTIKYARGVPLA 387 (538)
Q Consensus 330 ~~~~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLa 387 (538)
..+...+ .....+++.+++.++..+.+...+-.. ......+.+..+++.++|.+..
T Consensus 160 ~ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~e--gi~i~~~al~~ia~~s~G~~R~ 216 (559)
T PRK05563 160 HKIPATILSRCQRFDFKRISVEDIVERLKYILDKE--GIEYEDEALRLIARAAEGGMRD 216 (559)
T ss_pred hhCcHHHHhHheEEecCCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHcCCCHHH
Confidence 3333222 234578899999999999888776222 2234467788889999988753
No 102
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.28 E-value=8.8e-06 Score=91.19 Aligned_cols=193 Identities=13% Similarity=0.123 Sum_probs=103.4
Q ss_pred HHHHHHHhhhccccccCCCCCCCceeccchhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhccc-----e-e
Q 009306 167 LIEEIVNAILKRLDDTFHSENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRH-----F-S 240 (538)
Q Consensus 167 ~i~~i~~~~~~~~~~~~~~~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-----f-~ 240 (538)
.+++...++...... ...+.++||+.+++.+.+.|.... ..-+.++|++|+|||++|..++.++... . .
T Consensus 161 ~l~~~~~~l~~~a~~---~~~~~~igr~~ei~~~~~~L~r~~--~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~ 235 (821)
T CHL00095 161 TLEEFGTNLTKEAID---GNLDPVIGREKEIERVIQILGRRT--KNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILED 235 (821)
T ss_pred HHHHHHHHHHHHHHc---CCCCCCCCcHHHHHHHHHHHcccc--cCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcC
Confidence 445544444443211 223568999999999999997542 2346799999999999999999986532 1 2
Q ss_pred eEEEEeehhhhhhcCChHHHHHHHHHHHhcCCCCCCchhhcHHHHHHH-hcCCCeEEEEecCCChH----------HHHH
Q 009306 241 GSYFARNVREAEETCRLGDLRQQLLSTLLNDGNVKNFLNTDLNFQSRR-LTRKKVLIVFDDVDHPR----------QIKI 309 (538)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~----------~~~~ 309 (538)
..+|..+.... + .+... ....++.+..+.+. ...++++|+||+++..- ....
T Consensus 236 ~~i~~l~~~~l---------~-------ag~~~-~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~l 298 (821)
T CHL00095 236 KLVITLDIGLL---------L-------AGTKY-RGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANI 298 (821)
T ss_pred CeEEEeeHHHH---------h-------ccCCC-ccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHH
Confidence 33443322111 0 01100 01122222222222 23568899999985321 1223
Q ss_pred HhcCcCCCCCCCEEEEeccchhhhhh-------cCCCeeEEcCCCCHHHHHHHHHhhh--cCCCCCCCchHHHHHHHHHH
Q 009306 310 LVGRLDLFASGSRIIITTRDRQVLAN-------CGVDEVYQMEELVHDDALRLFSRHA--FGGDHPHESHTELACKTIKY 380 (538)
Q Consensus 310 l~~~l~~~~~~~~iiiTtR~~~~~~~-------~~~~~~~~l~~L~~~ea~~Lf~~~~--~~~~~~~~~~~~~~~~i~~~ 380 (538)
+.+.+. ....++|.+|.....-.. ......+.++..+.++..+++.... +..........+....+++.
T Consensus 299 Lkp~l~--rg~l~~IgaTt~~ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~l 376 (821)
T CHL00095 299 LKPALA--RGELQCIGATTLDEYRKHIEKDPALERRFQPVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKL 376 (821)
T ss_pred hHHHHh--CCCcEEEEeCCHHHHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 333332 233556666654433111 1223567889999999888876532 10101111334555666666
Q ss_pred hcC
Q 009306 381 ARG 383 (538)
Q Consensus 381 ~~G 383 (538)
++|
T Consensus 377 s~~ 379 (821)
T CHL00095 377 SDQ 379 (821)
T ss_pred hhc
Confidence 654
No 103
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=98.25 E-value=1.7e-05 Score=82.58 Aligned_cols=159 Identities=19% Similarity=0.308 Sum_probs=89.8
Q ss_pred CCceeccchhHHHHHhhhc-----------CCCCceEEEEeccCCCchhHHHHHHHHhhccce-----eeEEEEeehhhh
Q 009306 188 EDLVGVRLPMKEIESLLRT-----------GSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHF-----SGSYFARNVREA 251 (538)
Q Consensus 188 ~~~vGR~~~l~~l~~~L~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f-----~~~~~~~~~~~~ 251 (538)
.++.|.+.+++++.+.+.. +-...+-+.|+|++|+|||++|+++++.+...+ ...+|+. +..
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~-v~~- 259 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLN-IKG- 259 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEe-ccc-
Confidence 5577899988888776431 122345699999999999999999999876542 1233433 110
Q ss_pred hhcCChHHHHHHHHHHHhcCCCCCCchhhcHHHHHHHh-cCCCeEEEEecCCChH--------------HHHHHhcCcCC
Q 009306 252 EETCRLGDLRQQLLSTLLNDGNVKNFLNTDLNFQSRRL-TRKKVLIVFDDVDHPR--------------QIKILVGRLDL 316 (538)
Q Consensus 252 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~--------------~~~~l~~~l~~ 316 (538)
..+ +....+. ....+.......++.. .+++++|+||+++... .+..++..+..
T Consensus 260 ------~eL----l~kyvGe--te~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDg 327 (512)
T TIGR03689 260 ------PEL----LNKYVGE--TERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDG 327 (512)
T ss_pred ------hhh----cccccch--HHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcc
Confidence 000 0000000 0011111222222221 3578999999997421 12334443332
Q ss_pred CC--CCCEEEEeccchhhhh-----hcCCCeeEEcCCCCHHHHHHHHHhhh
Q 009306 317 FA--SGSRIIITTRDRQVLA-----NCGVDEVYQMEELVHDDALRLFSRHA 360 (538)
Q Consensus 317 ~~--~~~~iiiTtR~~~~~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~~ 360 (538)
.. .+..||.||.....+. ....+..++++..+.++..++|..+.
T Consensus 328 l~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 328 VESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYL 378 (512)
T ss_pred cccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHh
Confidence 22 3444566664443322 11345678999999999999999886
No 104
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.24 E-value=2.4e-05 Score=87.63 Aligned_cols=170 Identities=12% Similarity=0.114 Sum_probs=92.6
Q ss_pred HHHHHHHhhhccccccCCCCCCCceeccchhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhccce------e
Q 009306 167 LIEEIVNAILKRLDDTFHSENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHF------S 240 (538)
Q Consensus 167 ~i~~i~~~~~~~~~~~~~~~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f------~ 240 (538)
.+++.-.++.....+ ..-+.++||+.++..+.+.|.... ...+.++|++|+|||+||..++.++.... .
T Consensus 160 ~l~~~~~~l~~~~r~---~~l~~vigr~~ei~~~i~iL~r~~--~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~ 234 (857)
T PRK10865 160 ALKKYTIDLTERAEQ---GKLDPVIGRDEEIRRTIQVLQRRT--KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKG 234 (857)
T ss_pred HHHHHhhhHHHHHhc---CCCCcCCCCHHHHHHHHHHHhcCC--cCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCC
Confidence 344444444333322 234679999999999999887532 33477999999999999999999875421 1
Q ss_pred eEEEEeehhhhhhcCChHHHHHHHHHHHhcCCCCCCchhhcHHHHHHHh--cCCCeEEEEecCCChH----------HHH
Q 009306 241 GSYFARNVREAEETCRLGDLRQQLLSTLLNDGNVKNFLNTDLNFQSRRL--TRKKVLIVFDDVDHPR----------QIK 308 (538)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~~l--~~k~~LlVlDdv~~~~----------~~~ 308 (538)
..+|..+......... . ....+.....+.+.+ ...+++|++|+++... .-.
T Consensus 235 ~~~~~l~l~~l~ag~~----------------~-~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~ 297 (857)
T PRK10865 235 RRVLALDMGALVAGAK----------------Y-RGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGN 297 (857)
T ss_pred CEEEEEehhhhhhccc----------------h-hhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHH
Confidence 2233222211100000 0 011111111121211 2468999999996432 223
Q ss_pred HHhcCcCCCCCCCEEEEeccchhhhhh-------cCCCeeEEcCCCCHHHHHHHHHhhh
Q 009306 309 ILVGRLDLFASGSRIIITTRDRQVLAN-------CGVDEVYQMEELVHDDALRLFSRHA 360 (538)
Q Consensus 309 ~l~~~l~~~~~~~~iiiTtR~~~~~~~-------~~~~~~~~l~~L~~~ea~~Lf~~~~ 360 (538)
.+.+.+. ....++|-+|........ ....+.+.+...+.++...++....
T Consensus 298 ~lkp~l~--~g~l~~IgaTt~~e~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 298 MLKPALA--RGELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred Hhcchhh--cCCCeEEEcCCCHHHHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 3334432 234556655554432111 1122356677778899998886654
No 105
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=98.23 E-value=0.0001 Score=68.27 Aligned_cols=181 Identities=14% Similarity=0.165 Sum_probs=104.3
Q ss_pred CCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhhcCChHHHHHHHHHHHhcCCCCC--CchhhcHHHHH
Q 009306 209 TNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEETCRLGDLRQQLLSTLLNDGNVK--NFLNTDLNFQS 286 (538)
Q Consensus 209 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~--~~~~~~~~~l~ 286 (538)
++.+++.++|.-|.|||.+++++..-+...--.++.+. .+..+...+...+...+...+... ...++....+.
T Consensus 49 d~qg~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~-----~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~ 123 (269)
T COG3267 49 DGQGILAVTGEVGSGKTVLRRALLASLNEDQVAVVVID-----KPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELA 123 (269)
T ss_pred cCCceEEEEecCCCchhHHHHHHHHhcCCCceEEEEec-----CcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHH
Confidence 45668999999999999999965554433222222322 234455566666666665522211 22233333333
Q ss_pred HHh-cCCC-eEEEEecCCCh-----HHHHHHhcCcCCCCCCCEEEEeccch-------hhhhhcC-CCee-EEcCCCCHH
Q 009306 287 RRL-TRKK-VLIVFDDVDHP-----RQIKILVGRLDLFASGSRIIITTRDR-------QVLANCG-VDEV-YQMEELVHD 350 (538)
Q Consensus 287 ~~l-~~k~-~LlVlDdv~~~-----~~~~~l~~~l~~~~~~~~iiiTtR~~-------~~~~~~~-~~~~-~~l~~L~~~ 350 (538)
... ++++ ..+++|+..+. +.++.|...-......-+|+..-..+ .++...+ ...+ |+++|++.+
T Consensus 124 al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~ 203 (269)
T COG3267 124 ALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEA 203 (269)
T ss_pred HHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChH
Confidence 333 4555 89999998543 33444433322222222344333211 1111111 1123 899999999
Q ss_pred HHHHHHHhhhcCCCCCCC-chHHHHHHHHHHhcCCcHHHHHHHHH
Q 009306 351 DALRLFSRHAFGGDHPHE-SHTELACKTIKYARGVPLALEVLGRY 394 (538)
Q Consensus 351 ea~~Lf~~~~~~~~~~~~-~~~~~~~~i~~~~~G~PLal~~~~~~ 394 (538)
+...++..+.-+...+.+ ...+....+.....|.|.+++.++..
T Consensus 204 ~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~~ 248 (269)
T COG3267 204 ETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLATL 248 (269)
T ss_pred HHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHHH
Confidence 999999888754433333 34556778899999999999888764
No 106
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.23 E-value=3e-05 Score=87.26 Aligned_cols=154 Identities=12% Similarity=0.124 Sum_probs=87.4
Q ss_pred CCCCceeccchhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhccce------eeEEEEeehhhhhhcCChHH
Q 009306 186 ENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHF------SGSYFARNVREAEETCRLGD 259 (538)
Q Consensus 186 ~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f------~~~~~~~~~~~~~~~~~~~~ 259 (538)
.-+.++||+.++..+...|.... ...+.++|++|+|||+++..++.++...+ ...+|..+...
T Consensus 171 ~~~~~igr~~ei~~~~~~l~r~~--~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~--------- 239 (852)
T TIGR03346 171 KLDPVIGRDEEIRRTIQVLSRRT--KNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGA--------- 239 (852)
T ss_pred CCCcCCCcHHHHHHHHHHHhcCC--CCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHH---------
Confidence 34679999999999999987543 23467899999999999999999875431 22233322111
Q ss_pred HHHHHHHHHhcCCCCCCchhhcHHHHHHHh--cCCCeEEEEecCCChH----------HHHHHhcCcCCCCCCCEEEEec
Q 009306 260 LRQQLLSTLLNDGNVKNFLNTDLNFQSRRL--TRKKVLIVFDDVDHPR----------QIKILVGRLDLFASGSRIIITT 327 (538)
Q Consensus 260 l~~~l~~~l~~~~~~~~~~~~~~~~l~~~l--~~k~~LlVlDdv~~~~----------~~~~l~~~l~~~~~~~~iiiTt 327 (538)
+.. +.. .....+.....+.+.+ .+++.+|+||+++... ....+.+.+. ....++|-+|
T Consensus 240 l~a-------~~~-~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~--~g~i~~IgaT 309 (852)
T TIGR03346 240 LIA-------GAK-YRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALA--RGELHCIGAT 309 (852)
T ss_pred Hhh-------cch-hhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhh--cCceEEEEeC
Confidence 100 000 0011122222222222 2468999999996431 1233333332 2234555555
Q ss_pred cchhhhhh-------cCCCeeEEcCCCCHHHHHHHHHhhh
Q 009306 328 RDRQVLAN-------CGVDEVYQMEELVHDDALRLFSRHA 360 (538)
Q Consensus 328 R~~~~~~~-------~~~~~~~~l~~L~~~ea~~Lf~~~~ 360 (538)
.....-.. ......+.++..+.++..+++....
T Consensus 310 t~~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 310 TLDEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred cHHHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 44432111 1123467899999999999887653
No 107
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=98.22 E-value=2.3e-05 Score=79.83 Aligned_cols=174 Identities=15% Similarity=0.168 Sum_probs=98.1
Q ss_pred CCCceeccchhHHHHHhhhc-----------CCCCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhhcC
Q 009306 187 NEDLVGVRLPMKEIESLLRT-----------GSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEETC 255 (538)
Q Consensus 187 ~~~~vGR~~~l~~l~~~L~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~ 255 (538)
-.++.|.+...++|.+.+.. +-...+-+.|+|++|+|||+||+.+++.....|- .+. ..
T Consensus 144 ~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi---~i~-~s------ 213 (398)
T PTZ00454 144 YSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFI---RVV-GS------ 213 (398)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEE---EEe-hH------
Confidence 35688999888888875531 1234567999999999999999999987654431 111 00
Q ss_pred ChHHHHHHHHHHHhcCCCCCCchhhcHHHHHHHhcCCCeEEEEecCCCh-------------H---HHHHHhcCcCCC--
Q 009306 256 RLGDLRQQLLSTLLNDGNVKNFLNTDLNFQSRRLTRKKVLIVFDDVDHP-------------R---QIKILVGRLDLF-- 317 (538)
Q Consensus 256 ~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-------------~---~~~~l~~~l~~~-- 317 (538)
.+ .....+. ........+.......|.+|+||+++.. . .+..++..+..+
T Consensus 214 ---~l----~~k~~ge-----~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~ 281 (398)
T PTZ00454 214 ---EF----VQKYLGE-----GPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQ 281 (398)
T ss_pred ---HH----HHHhcch-----hHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCC
Confidence 11 1111000 0011111222223467899999998642 0 122333333221
Q ss_pred CCCCEEEEeccchhhhhh-----cCCCeeEEcCCCCHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhcCCc
Q 009306 318 ASGSRIIITTRDRQVLAN-----CGVDEVYQMEELVHDDALRLFSRHAFGGDHPHESHTELACKTIKYARGVP 385 (538)
Q Consensus 318 ~~~~~iiiTtR~~~~~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 385 (538)
..+..||+||.....+.. ......++++..+.++-.++|..+..+..... .-....+++.+.|..
T Consensus 282 ~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~---dvd~~~la~~t~g~s 351 (398)
T PTZ00454 282 TTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSE---EVDLEDFVSRPEKIS 351 (398)
T ss_pred CCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCc---ccCHHHHHHHcCCCC
Confidence 235667888765533321 13456789999999998888887663221111 112456667776654
No 108
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.22 E-value=0.00024 Score=70.26 Aligned_cols=192 Identities=11% Similarity=0.107 Sum_probs=109.6
Q ss_pred CCceeccchhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhccc---------------eeeEEEEeehhhhh
Q 009306 188 EDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRH---------------FSGSYFARNVREAE 252 (538)
Q Consensus 188 ~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~---------------f~~~~~~~~~~~~~ 252 (538)
..++|.+...+.+...+..+. -.+...++|+.|+||+++|..++..+-.. ++...|+......
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~r-l~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~- 81 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNR-IAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQH- 81 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccc-
Confidence 468899999999999887542 24679999999999999999999865321 2333443310000
Q ss_pred hcCChHHHHHHHHHHHh--cCCCCCCchhhcHHHHHHHh-----cCCCeEEEEecCCCh--HHHHHHhcCcCCCCCCCEE
Q 009306 253 ETCRLGDLRQQLLSTLL--NDGNVKNFLNTDLNFQSRRL-----TRKKVLIVFDDVDHP--RQIKILVGRLDLFASGSRI 323 (538)
Q Consensus 253 ~~~~~~~l~~~l~~~l~--~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~i 323 (538)
...... .......+ ........+++. ..+.+.+ .+.+-++|+|+++.. .....++..+...+ .+.+
T Consensus 82 ~g~~~~---~~~~~~~~~~~~~~~~I~id~i-r~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~f 156 (314)
T PRK07399 82 QGKLIT---ASEAEEAGLKRKAPPQIRLEQI-REIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTL 156 (314)
T ss_pred cccccc---hhhhhhccccccccccCcHHHH-HHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeE
Confidence 000000 00000111 000000111121 2223333 235568999999754 45667776665544 4555
Q ss_pred EEec-cchhhhhhc-CCCeeEEcCCCCHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhcCCcHHHHHH
Q 009306 324 IITT-RDRQVLANC-GVDEVYQMEELVHDDALRLFSRHAFGGDHPHESHTELACKTIKYARGVPLALEVL 391 (538)
Q Consensus 324 iiTt-R~~~~~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~ 391 (538)
|++| ....+++.+ .....+++.+++.++..+.+..... .. ........++..++|.|.....+
T Consensus 157 ILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~--~~---~~~~~~~~l~~~a~Gs~~~al~~ 221 (314)
T PRK07399 157 ILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGD--EE---ILNINFPELLALAQGSPGAAIAN 221 (314)
T ss_pred EEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhc--cc---cchhHHHHHHHHcCCCHHHHHHH
Confidence 5555 444444443 2346899999999999999988651 11 11112357899999999655443
No 109
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.22 E-value=7.6e-05 Score=71.67 Aligned_cols=198 Identities=15% Similarity=0.137 Sum_probs=115.7
Q ss_pred CCceecc---chhHHHHHhhhc-CCCCceEEEEeccCCCchhHHHHHHHHhhcccee------eEEEEeehhhhhhcCCh
Q 009306 188 EDLVGVR---LPMKEIESLLRT-GSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFS------GSYFARNVREAEETCRL 257 (538)
Q Consensus 188 ~~~vGR~---~~l~~l~~~L~~-~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~------~~~~~~~~~~~~~~~~~ 257 (538)
+.+||-. ..++.|.++|.. .....+.+.|+|.+|+|||++++.++..+...++ .++.+. .....+.
T Consensus 34 ~rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq----~P~~p~~ 109 (302)
T PF05621_consen 34 DRWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQ----MPPEPDE 109 (302)
T ss_pred CCeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEe----cCCCCCh
Confidence 4455544 345566666664 3344677999999999999999999986554432 233333 5566778
Q ss_pred HHHHHHHHHHHhcCCCCCCchhhcHHHHHHHhcC-CCeEEEEecCCCh-----HHHHHHhcCcCCCCC---CCEEEEecc
Q 009306 258 GDLRQQLLSTLLNDGNVKNFLNTDLNFQSRRLTR-KKVLIVFDDVDHP-----RQIKILVGRLDLFAS---GSRIIITTR 328 (538)
Q Consensus 258 ~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~-k~~LlVlDdv~~~-----~~~~~l~~~l~~~~~---~~~iiiTtR 328 (538)
..+...++..++...............+...++. +.-+||||++.+. ..-+.++..+...++ =+-|.+-|+
T Consensus 110 ~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~ 189 (302)
T PF05621_consen 110 RRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTR 189 (302)
T ss_pred HHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccH
Confidence 8899999999887655555555555555555543 4458999999653 222222222221122 234555555
Q ss_pred chhhhhhc-----CCCeeEEcCCCCHH-HHHHHHHhhh--cC-CCCCCCchHHHHHHHHHHhcCCcHHHH
Q 009306 329 DRQVLANC-----GVDEVYQMEELVHD-DALRLFSRHA--FG-GDHPHESHTELACKTIKYARGVPLALE 389 (538)
Q Consensus 329 ~~~~~~~~-----~~~~~~~l~~L~~~-ea~~Lf~~~~--~~-~~~~~~~~~~~~~~i~~~~~G~PLal~ 389 (538)
+...+-.. +....+.++....+ +...|+.... .. .....-...+++..|++.++|+.--+.
T Consensus 190 ~A~~al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~ 259 (302)
T PF05621_consen 190 EAYRALRTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELS 259 (302)
T ss_pred HHHHHhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHH
Confidence 43221111 11345667776654 4445543332 11 112223457889999999999974443
No 110
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.21 E-value=8.5e-05 Score=69.08 Aligned_cols=56 Identities=18% Similarity=0.345 Sum_probs=42.7
Q ss_pred CCCCCCceeccchhHHHHHhhhc--CCCCceEEEEeccCCCchhHHHHHHHHhhccce
Q 009306 184 HSENEDLVGVRLPMKEIESLLRT--GSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHF 239 (538)
Q Consensus 184 ~~~~~~~vGR~~~l~~l~~~L~~--~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f 239 (538)
+...+.++|.+.+.+.|.+.... .+....-+.+||..|.|||+|++++.+++....
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~G 80 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQG 80 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcC
Confidence 34557899999999998764432 122344588899999999999999999877654
No 111
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.20 E-value=7.3e-05 Score=74.28 Aligned_cols=93 Identities=11% Similarity=0.176 Sum_probs=63.2
Q ss_pred CCeEEEEecCCC--hHHHHHHhcCcCCCCCCCEEEEeccch-hhhhhc-CCCeeEEcCCCCHHHHHHHHHhhhcCCCCCC
Q 009306 292 KKVLIVFDDVDH--PRQIKILVGRLDLFASGSRIIITTRDR-QVLANC-GVDEVYQMEELVHDDALRLFSRHAFGGDHPH 367 (538)
Q Consensus 292 k~~LlVlDdv~~--~~~~~~l~~~l~~~~~~~~iiiTtR~~-~~~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~ 367 (538)
++-++|||+++. ......++..+..-.+++.+|++|.+. .+++.+ .....+.+.+++.+++.+.+.... .
T Consensus 106 ~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~--~---- 179 (328)
T PRK05707 106 GRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQAL--P---- 179 (328)
T ss_pred CCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhc--c----
Confidence 344567899974 456777777776656677777777665 344333 234678999999999999997653 1
Q ss_pred CchHHHHHHHHHHhcCCcHHHHH
Q 009306 368 ESHTELACKTIKYARGVPLALEV 390 (538)
Q Consensus 368 ~~~~~~~~~i~~~~~G~PLal~~ 390 (538)
....+.+..++..++|.|+....
T Consensus 180 ~~~~~~~~~~l~la~Gsp~~A~~ 202 (328)
T PRK05707 180 ESDERERIELLTLAGGSPLRALQ 202 (328)
T ss_pred cCChHHHHHHHHHcCCCHHHHHH
Confidence 12234456778999999964433
No 112
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=98.19 E-value=0.00037 Score=69.92 Aligned_cols=104 Identities=15% Similarity=0.102 Sum_probs=68.4
Q ss_pred CeEEEEecCCCh--------HHHHHHhcCcCCCCCCCEEEEeccchhhhhhc------CCCeeEEcCCCCHHHHHHHHHh
Q 009306 293 KVLIVFDDVDHP--------RQIKILVGRLDLFASGSRIIITTRDRQVLANC------GVDEVYQMEELVHDDALRLFSR 358 (538)
Q Consensus 293 ~~LlVlDdv~~~--------~~~~~l~~~l~~~~~~~~iiiTtR~~~~~~~~------~~~~~~~l~~L~~~ea~~Lf~~ 358 (538)
+-+|||||+... ..+..+...+.. ++-.+||++|-+......+ ...+.+.|...+.+-|.++...
T Consensus 149 ~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv~-~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~ 227 (431)
T PF10443_consen 149 RPVVVIDNFLHKAEENDFIYDKLAEWAASLVQ-NNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLS 227 (431)
T ss_pred CCEEEEcchhccCcccchHHHHHHHHHHHHHh-cCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHH
Confidence 458999998421 112222222221 3456888888776443322 2446788999999999999999
Q ss_pred hhcCCCCC------------------CCchHHHHHHHHHHhcCCcHHHHHHHHHhcC
Q 009306 359 HAFGGDHP------------------HESHTELACKTIKYARGVPLALEVLGRYLYG 397 (538)
Q Consensus 359 ~~~~~~~~------------------~~~~~~~~~~i~~~~~G~PLal~~~~~~L~~ 397 (538)
+....... ...........++.+||--.-|+.+++.++.
T Consensus 228 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiks 284 (431)
T PF10443_consen 228 QLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKS 284 (431)
T ss_pred HhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHc
Confidence 88332110 0134455677889999999999999998865
No 113
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=98.19 E-value=5e-05 Score=74.11 Aligned_cols=128 Identities=14% Similarity=0.132 Sum_probs=70.0
Q ss_pred EEEEeccCCCchhHHHHHHHHhhccce--eeEEEEeehhhhhhcCChHHHHHHHHHHHhcCCCCCCchhhcHHHHHHHhc
Q 009306 213 KLGIWGIGGIGKTTIAGAIFNKISRHF--SGSYFARNVREAEETCRLGDLRQQLLSTLLNDGNVKNFLNTDLNFQSRRLT 290 (538)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~~~~~f--~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~ 290 (538)
.+.|+|++|+|||++|+.++..+.... ....|+... ...+ ...+.+.. .......+ +.
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~--------~~~l----~~~~~g~~-----~~~~~~~~-~~-- 119 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVT--------RDDL----VGQYIGHT-----APKTKEIL-KR-- 119 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEec--------HHHH----hHhhcccc-----hHHHHHHH-HH--
Confidence 588999999999999988887654321 111222200 0111 11111110 01111111 11
Q ss_pred CCCeEEEEecCCCh-----------HHHHHHhcCcCCCCCCCEEEEeccchhhhhhc--------CCCeeEEcCCCCHHH
Q 009306 291 RKKVLIVFDDVDHP-----------RQIKILVGRLDLFASGSRIIITTRDRQVLANC--------GVDEVYQMEELVHDD 351 (538)
Q Consensus 291 ~k~~LlVlDdv~~~-----------~~~~~l~~~l~~~~~~~~iiiTtR~~~~~~~~--------~~~~~~~l~~L~~~e 351 (538)
..+-+|+||+++.. +....+...+.....+.+||+++.....-... .....+++++++.+|
T Consensus 120 a~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~ed 199 (284)
T TIGR02880 120 AMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAE 199 (284)
T ss_pred ccCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHH
Confidence 13468999999632 22445555544434566677766543221111 123578999999999
Q ss_pred HHHHHHhhh
Q 009306 352 ALRLFSRHA 360 (538)
Q Consensus 352 a~~Lf~~~~ 360 (538)
..+++...+
T Consensus 200 l~~I~~~~l 208 (284)
T TIGR02880 200 LLVIAGLML 208 (284)
T ss_pred HHHHHHHHH
Confidence 999988876
No 114
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=98.14 E-value=6.8e-05 Score=75.41 Aligned_cols=155 Identities=17% Similarity=0.194 Sum_probs=92.5
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhhcCChHHHHHHHHHHHhcCCCCCCchhhcHHHHHHHh
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEETCRLGDLRQQLLSTLLNDGNVKNFLNTDLNFQSRRL 289 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~~l 289 (538)
....+.|||+.|.|||.|++++++......+...++. .........+...+.. ......++..
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y--------~~se~f~~~~v~a~~~---------~~~~~Fk~~y 174 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVY--------LTSEDFTNDFVKALRD---------NEMEKFKEKY 174 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEe--------ccHHHHHHHHHHHHHh---------hhHHHHHHhh
Confidence 4667999999999999999999998877766332222 1122222333332221 1122333443
Q ss_pred cCCCeEEEEecCCCh----HHHHHHhcCcCCC-CCCCEEEEeccch---------hhhhhcCCCeeEEcCCCCHHHHHHH
Q 009306 290 TRKKVLIVFDDVDHP----RQIKILVGRLDLF-ASGSRIIITTRDR---------QVLANCGVDEVYQMEELVHDDALRL 355 (538)
Q Consensus 290 ~~k~~LlVlDdv~~~----~~~~~l~~~l~~~-~~~~~iiiTtR~~---------~~~~~~~~~~~~~l~~L~~~ea~~L 355 (538)
.--++++||++-. ..-+.+...+... ..|..||+|++.. .+.+.+....++++.+++.+....+
T Consensus 175 --~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~ai 252 (408)
T COG0593 175 --SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAI 252 (408)
T ss_pred --ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHH
Confidence 3348899999532 2233333322211 3455899998543 2233344557899999999999999
Q ss_pred HHhhhcCCCCCCCchHHHHHHHHHHhcCCc
Q 009306 356 FSRHAFGGDHPHESHTELACKTIKYARGVP 385 (538)
Q Consensus 356 f~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 385 (538)
+.+++ ........++...-+++....+-
T Consensus 253 L~kka--~~~~~~i~~ev~~~la~~~~~nv 280 (408)
T COG0593 253 LRKKA--EDRGIEIPDEVLEFLAKRLDRNV 280 (408)
T ss_pred HHHHH--HhcCCCCCHHHHHHHHHHhhccH
Confidence 99976 23333444566666666555543
No 115
>CHL00176 ftsH cell division protein; Validated
Probab=98.13 E-value=7.6e-05 Score=80.44 Aligned_cols=172 Identities=17% Similarity=0.201 Sum_probs=97.9
Q ss_pred CCCceeccchhHHHHHhhhc----------CCCCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhhcCC
Q 009306 187 NEDLVGVRLPMKEIESLLRT----------GSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEETCR 256 (538)
Q Consensus 187 ~~~~vGR~~~l~~l~~~L~~----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 256 (538)
..++.|.+...+++.+.+.. +....+-+.|+|++|+|||+||++++.+....| +.+. ..
T Consensus 182 f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~---i~is-~s------- 250 (638)
T CHL00176 182 FRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPF---FSIS-GS------- 250 (638)
T ss_pred HHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCe---eecc-HH-------
Confidence 35678888777766655421 112245699999999999999999998753321 1111 11
Q ss_pred hHHHHHHHHHHHhcCCCCCCchhhcHHHHHHHhcCCCeEEEEecCCCh----------------HHHHHHhcCcCCC--C
Q 009306 257 LGDLRQQLLSTLLNDGNVKNFLNTDLNFQSRRLTRKKVLIVFDDVDHP----------------RQIKILVGRLDLF--A 318 (538)
Q Consensus 257 ~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~----------------~~~~~l~~~l~~~--~ 318 (538)
.+.... .+ .........+.......+++|+|||++.. ..+..++..+..+ .
T Consensus 251 --~f~~~~----~g-----~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~ 319 (638)
T CHL00176 251 --EFVEMF----VG-----VGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGN 319 (638)
T ss_pred --HHHHHh----hh-----hhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCC
Confidence 111100 00 01111222333444568899999999643 1133343333322 2
Q ss_pred CCCEEEEeccchhhhhh-----cCCCeeEEcCCCCHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhcC
Q 009306 319 SGSRIIITTRDRQVLAN-----CGVDEVYQMEELVHDDALRLFSRHAFGGDHPHESHTELACKTIKYARG 383 (538)
Q Consensus 319 ~~~~iiiTtR~~~~~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G 383 (538)
.+..||.+|.....+.. ...+..+.++..+.++-.+++..++.. ...........+++.+.|
T Consensus 320 ~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~---~~~~~d~~l~~lA~~t~G 386 (638)
T CHL00176 320 KGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARN---KKLSPDVSLELIARRTPG 386 (638)
T ss_pred CCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhh---cccchhHHHHHHHhcCCC
Confidence 35566666655433221 134567889999999999999888733 111223345677888777
No 116
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=98.11 E-value=4.5e-05 Score=83.68 Aligned_cols=152 Identities=14% Similarity=0.199 Sum_probs=86.4
Q ss_pred CCceeccchhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhccce------eeEEEEeehhhhhhcCChHHHH
Q 009306 188 EDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHF------SGSYFARNVREAEETCRLGDLR 261 (538)
Q Consensus 188 ~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f------~~~~~~~~~~~~~~~~~~~~l~ 261 (538)
+.++||+.++..+.+.|.... ..-+.|+|++|+|||++|+.++.++.... ...+|..+ +..+
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~--~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~---------~~~l- 253 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRR--KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLD---------IGSL- 253 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEecc---------HHHH-
Confidence 569999999999999887632 23367899999999999999998753321 22233221 1111
Q ss_pred HHHHHHHhcCCCCCCchhhcHHHHHHHh-cCCCeEEEEecCCCh----------HHHH-HHhcCcCCCCCCCEEEEeccc
Q 009306 262 QQLLSTLLNDGNVKNFLNTDLNFQSRRL-TRKKVLIVFDDVDHP----------RQIK-ILVGRLDLFASGSRIIITTRD 329 (538)
Q Consensus 262 ~~l~~~l~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~----------~~~~-~l~~~l~~~~~~~~iiiTtR~ 329 (538)
+ .+.. .....+.....+.+.+ ...+.+|+||+++.. .+.. .+.+.+. ....++|-+|..
T Consensus 254 ---l---aG~~-~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~--~g~i~vIgATt~ 324 (758)
T PRK11034 254 ---L---AGTK-YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS--SGKIRVIGSTTY 324 (758)
T ss_pred ---h---cccc-hhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHh--CCCeEEEecCCh
Confidence 1 0000 0011222222222222 346789999999632 1121 2333332 223455555544
Q ss_pred hhhhhh-------cCCCeeEEcCCCCHHHHHHHHHhhh
Q 009306 330 RQVLAN-------CGVDEVYQMEELVHDDALRLFSRHA 360 (538)
Q Consensus 330 ~~~~~~-------~~~~~~~~l~~L~~~ea~~Lf~~~~ 360 (538)
..+... .+..+.+.+++++.++..+++....
T Consensus 325 ~E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 325 QEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred HHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 332111 1123578999999999999998654
No 117
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=98.11 E-value=3e-05 Score=79.57 Aligned_cols=173 Identities=19% Similarity=0.217 Sum_probs=97.8
Q ss_pred CCceeccchhHHHHHhhhc-----------CCCCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhhcCC
Q 009306 188 EDLVGVRLPMKEIESLLRT-----------GSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEETCR 256 (538)
Q Consensus 188 ~~~vGR~~~l~~l~~~L~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 256 (538)
.++.|.+.++++|.+.+.. +-...+.+.|+|++|+|||++|+.+++.....|- .+.. .
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi---~V~~-s------- 251 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFL---RVVG-S------- 251 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEE---EEec-c-------
Confidence 5678999999999886642 1123456889999999999999999998765542 1110 0
Q ss_pred hHHHHHHHHHHHhcCCCCCCchhhcHHHHHHHhcCCCeEEEEecCCChH----------------HHHHHhcCcCCC--C
Q 009306 257 LGDLRQQLLSTLLNDGNVKNFLNTDLNFQSRRLTRKKVLIVFDDVDHPR----------------QIKILVGRLDLF--A 318 (538)
Q Consensus 257 ~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~----------------~~~~l~~~l~~~--~ 318 (538)
.+... ..+. ........+.....+.+.+|+||+++... .+-.++..+..+ .
T Consensus 252 --eL~~k----~~Ge-----~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~ 320 (438)
T PTZ00361 252 --ELIQK----YLGD-----GPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSR 320 (438)
T ss_pred --hhhhh----hcch-----HHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhccc
Confidence 01000 0000 00011111122224578899999985321 112222222211 2
Q ss_pred CCCEEEEeccchhhhhhc-----CCCeeEEcCCCCHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhcCCc
Q 009306 319 SGSRIIITTRDRQVLANC-----GVDEVYQMEELVHDDALRLFSRHAFGGDHPHESHTELACKTIKYARGVP 385 (538)
Q Consensus 319 ~~~~iiiTtR~~~~~~~~-----~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 385 (538)
.+..||++|.....+... .....++++..+.++..++|..+...-..... -....++..+.|.-
T Consensus 321 ~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~d---vdl~~la~~t~g~s 389 (438)
T PTZ00361 321 GDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAED---VDLEEFIMAKDELS 389 (438)
T ss_pred CCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcC---cCHHHHHHhcCCCC
Confidence 356788888755443221 23567899999999999999987632211111 12345666666554
No 118
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.10 E-value=4.6e-05 Score=82.29 Aligned_cols=50 Identities=20% Similarity=0.294 Sum_probs=39.6
Q ss_pred CCCCCCceeccchhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhh
Q 009306 184 HSENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKI 235 (538)
Q Consensus 184 ~~~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (538)
|...+.++|++..+..+.+.+.. .....+.|+|++|+||||||+.++...
T Consensus 150 p~~~~~iiGqs~~~~~l~~~ia~--~~~~~vlL~Gp~GtGKTTLAr~i~~~~ 199 (615)
T TIGR02903 150 PRAFSEIVGQERAIKALLAKVAS--PFPQHIILYGPPGVGKTTAARLALEEA 199 (615)
T ss_pred cCcHHhceeCcHHHHHHHHHHhc--CCCCeEEEECCCCCCHHHHHHHHHHhh
Confidence 34446799999999988777643 234569999999999999999988754
No 119
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.10 E-value=0.00027 Score=72.34 Aligned_cols=222 Identities=16% Similarity=0.119 Sum_probs=124.0
Q ss_pred EEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhhcCChHHHHHHHHHHHhcCCCCCCchhhcHHHHHHHhcCC
Q 009306 213 KLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEETCRLGDLRQQLLSTLLNDGNVKNFLNTDLNFQSRRLTRK 292 (538)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~k 292 (538)
++.|.|+.++||||+++.+....... .+++...........+.+.... +.+.-..+
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~---~iy~~~~d~~~~~~~l~d~~~~---------------------~~~~~~~~ 94 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEE---IIYINFDDLRLDRIELLDLLRA---------------------YIELKERE 94 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcc---eEEEEecchhcchhhHHHHHHH---------------------HHHhhccC
Confidence 89999999999999997777665544 4444421111111111111111 11111126
Q ss_pred CeEEEEecCCChHHHHHHhcCcCCCCCCCEEEEeccchhhhhh-----c-CCCeeEEcCCCCHHHHHHHHHhhhcCCCCC
Q 009306 293 KVLIVFDDVDHPRQIKILVGRLDLFASGSRIIITTRDRQVLAN-----C-GVDEVYQMEELVHDDALRLFSRHAFGGDHP 366 (538)
Q Consensus 293 ~~LlVlDdv~~~~~~~~l~~~l~~~~~~~~iiiTtR~~~~~~~-----~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~ 366 (538)
+.+|+||.|.....|...+..+...++. +|++|+.+...+.. + +....+++-||+..|-..+-.... ..
T Consensus 95 ~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~~~~~~----~~ 169 (398)
T COG1373 95 KSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKLKGEEI----EP 169 (398)
T ss_pred CceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhhccccc----ch
Confidence 7899999999999888887776655555 88888877644322 1 345678999999999887543111 00
Q ss_pred CCchHHHHHHHHHHhcCCcHHHHHHHHHhcCCCHHHHHHHHHHhhcCCCCcHHHHHHHhH-hCCCHHhHHHhhccc-ccc
Q 009306 367 HESHTELACKTIKYARGVPLALEVLGRYLYGKRREVWENAKSKWETAPPKGIQDALKISY-DGLDDKEQNIFLDIA-CFF 444 (538)
Q Consensus 367 ~~~~~~~~~~i~~~~~G~PLal~~~~~~L~~~~~~~~~~~l~~l~~~~~~~v~~~l~~s~-~~L~~~~k~~l~~la-~f~ 444 (538)
. . ....-+-.-.+||.|.++..-...-. ........+. .++.+..- ... ...+.++..++ -.+
T Consensus 170 ~-~-~~~~f~~Yl~~GGfP~~v~~~~~~~~--~~~~~~~~~~----------~Di~~~~~~~~~-~~~k~i~~~l~~~~g 234 (398)
T COG1373 170 S-K-LELLFEKYLETGGFPESVKADLSEKK--LKEYLDTILK----------RDIIERGKIENA-DLMKRILRFLASNIG 234 (398)
T ss_pred h-H-HHHHHHHHHHhCCCcHHHhCcchhhH--HHHHHHHHHH----------HHHHHHcCcccH-HHHHHHHHHHHhhcC
Confidence 0 1 11123334557999987754332111 0011111110 01111110 011 34455554444 445
Q ss_pred CCCCHHHHHHHH-HhCCCChHHHHHHHhhCCceeE
Q 009306 445 IDEDRDTATKFL-DDCEFFATSAIEVLVDKHLITI 478 (538)
Q Consensus 445 ~~~~~~~l~~l~-~~~~~~~~~~l~~L~~~~Li~~ 478 (538)
..++...+...+ ..+......+++.|.+.-++..
T Consensus 235 ~~~s~~~la~~l~~is~~Ti~~Yl~~le~~fll~~ 269 (398)
T COG1373 235 SPISYSSLARELKGISKDTIRKYLSYLEDAFLLFL 269 (398)
T ss_pred CccCHHHHHHHHhccchHHHHHHHHHHHHhhheEE
Confidence 568889988888 4454556678888888888773
No 120
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=98.07 E-value=9e-05 Score=78.53 Aligned_cols=180 Identities=17% Similarity=0.185 Sum_probs=98.0
Q ss_pred CCCceeccchhHHHHHhhh---c-------CCCCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhhcCC
Q 009306 187 NEDLVGVRLPMKEIESLLR---T-------GSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEETCR 256 (538)
Q Consensus 187 ~~~~vGR~~~l~~l~~~L~---~-------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 256 (538)
-++++|.+...+++.+++. . +....+-+.++|++|+|||+||+.++......| +....
T Consensus 54 ~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~----~~i~~-------- 121 (495)
T TIGR01241 54 FKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPF----FSISG-------- 121 (495)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCe----eeccH--------
Confidence 3567888877766665443 1 122345589999999999999999998754332 11110
Q ss_pred hHHHHHHHHHHHhcCCCCCCchhhcHHHHHHHhcCCCeEEEEecCCChH----------------HHHHHhcCcCCC--C
Q 009306 257 LGDLRQQLLSTLLNDGNVKNFLNTDLNFQSRRLTRKKVLIVFDDVDHPR----------------QIKILVGRLDLF--A 318 (538)
Q Consensus 257 ~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~----------------~~~~l~~~l~~~--~ 318 (538)
..+.. ...+ .........+.......|.+|+|||++... .+..++..+..+ .
T Consensus 122 -~~~~~----~~~g-----~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~ 191 (495)
T TIGR01241 122 -SDFVE----MFVG-----VGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTN 191 (495)
T ss_pred -HHHHH----HHhc-----ccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCC
Confidence 11111 0000 011111222223334678999999996421 122333333222 2
Q ss_pred CCCEEEEeccchhhh-----hhcCCCeeEEcCCCCHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhcCC-cHHHHHH
Q 009306 319 SGSRIIITTRDRQVL-----ANCGVDEVYQMEELVHDDALRLFSRHAFGGDHPHESHTELACKTIKYARGV-PLALEVL 391 (538)
Q Consensus 319 ~~~~iiiTtR~~~~~-----~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~-PLal~~~ 391 (538)
.+..||.||.....+ .....+..+.++..+.++-.+++..+....... .......+++.+.|. +--|..+
T Consensus 192 ~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~---~~~~l~~la~~t~G~sgadl~~l 267 (495)
T TIGR01241 192 TGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLA---PDVDLKAVARRTPGFSGADLANL 267 (495)
T ss_pred CCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCC---cchhHHHHHHhCCCCCHHHHHHH
Confidence 244456666544221 112345688999999999999998876332211 122345788888774 3444443
No 121
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=98.07 E-value=6.3e-05 Score=73.31 Aligned_cols=168 Identities=18% Similarity=0.275 Sum_probs=100.8
Q ss_pred CCCCceeccchhHHHHHhhhcCCCCceE-EEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhhcCChHHHHHHH
Q 009306 186 ENEDLVGVRLPMKEIESLLRTGSTNVYK-LGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEETCRLGDLRQQL 264 (538)
Q Consensus 186 ~~~~~vGR~~~l~~l~~~L~~~~~~~~~-v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l 264 (538)
..+.|.+|+.++..+..++...+...+. +.|+|.+|.|||.+.+++.+.... ..+|+.+ -.......+..++
T Consensus 4 l~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~---~~vw~n~----~ecft~~~lle~I 76 (438)
T KOG2543|consen 4 LEPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNL---ENVWLNC----VECFTYAILLEKI 76 (438)
T ss_pred cccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCC---cceeeeh----HHhccHHHHHHHH
Confidence 3478899999999999999876554444 589999999999999999987632 3568773 3346667777777
Q ss_pred HHHHhcC-CCCC---C---chhhcHHHHHH--Hhc--CCCeEEEEecCCChHHHH-----HHhcCcCCCCCCCEEEEecc
Q 009306 265 LSTLLND-GNVK---N---FLNTDLNFQSR--RLT--RKKVLIVFDDVDHPRQIK-----ILVGRLDLFASGSRIIITTR 328 (538)
Q Consensus 265 ~~~l~~~-~~~~---~---~~~~~~~~l~~--~l~--~k~~LlVlDdv~~~~~~~-----~l~~~l~~~~~~~~iiiTtR 328 (538)
+.+.... .+.. . ........+.+ ... ++.++|||||++...+.+ .+............+|+++-
T Consensus 77 L~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~ 156 (438)
T KOG2543|consen 77 LNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSA 156 (438)
T ss_pred HHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEec
Confidence 7776421 1111 1 11111222222 122 358999999997654422 22111111112233333332
Q ss_pred c---hhhhhhcCCC--eeEEcCCCCHHHHHHHHHhhh
Q 009306 329 D---RQVLANCGVD--EVYQMEELVHDDALRLFSRHA 360 (538)
Q Consensus 329 ~---~~~~~~~~~~--~~~~l~~L~~~ea~~Lf~~~~ 360 (538)
. .......+.. -++.++..+.+|..+++.+.-
T Consensus 157 ~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~ 193 (438)
T KOG2543|consen 157 PSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRDN 193 (438)
T ss_pred cccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcCC
Confidence 2 2223222322 356789999999999987643
No 122
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.05 E-value=0.00011 Score=71.09 Aligned_cols=171 Identities=19% Similarity=0.249 Sum_probs=99.7
Q ss_pred CceeccchhHHHHHhhhc-----------CCCCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhhcCCh
Q 009306 189 DLVGVRLPMKEIESLLRT-----------GSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEETCRL 257 (538)
Q Consensus 189 ~~vGR~~~l~~l~~~L~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 257 (538)
..=|-+.++++|.+...- +-+..+-|.++|++|.|||-||++++++....| +..++
T Consensus 152 dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtF-----Irvvg-------- 218 (406)
T COG1222 152 DIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATF-----IRVVG-------- 218 (406)
T ss_pred hccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceE-----EEecc--------
Confidence 445677777777765432 223456699999999999999999999876543 33111
Q ss_pred HHHHHHHHHHHhcCCCCCCchhhcHHHHHHHh-cCCCeEEEEecCCCh----------------HHHHHHhcCcCCCCC-
Q 009306 258 GDLRQQLLSTLLNDGNVKNFLNTDLNFQSRRL-TRKKVLIVFDDVDHP----------------RQIKILVGRLDLFAS- 319 (538)
Q Consensus 258 ~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~----------------~~~~~l~~~l~~~~~- 319 (538)
..+.+.. .+. -..+...+.+.. ...|.+|.+|++|.. ..+-.|+..+..|.+
T Consensus 219 SElVqKY----iGE------GaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~ 288 (406)
T COG1222 219 SELVQKY----IGE------GARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPR 288 (406)
T ss_pred HHHHHHH----hcc------chHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCC
Confidence 1122221 111 111222222222 357899999999642 123344555555544
Q ss_pred -CCEEEEeccchhhh-----hhcCCCeeEEcCCCCHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhcCCc
Q 009306 320 -GSRIIITTRDRQVL-----ANCGVDEVYQMEELVHDDALRLFSRHAFGGDHPHESHTELACKTIKYARGVP 385 (538)
Q Consensus 320 -~~~iiiTtR~~~~~-----~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 385 (538)
+.+||..|...+.+ ..-..++.++++.-+.+.-.++|.-|..+=+...+ --.+.+++.+.|.-
T Consensus 289 ~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~d---vd~e~la~~~~g~s 357 (406)
T COG1222 289 GNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADD---VDLELLARLTEGFS 357 (406)
T ss_pred CCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccC---cCHHHHHHhcCCCc
Confidence 56888877655443 22245678999977777777788777632221111 11456677777764
No 123
>CHL00181 cbbX CbbX; Provisional
Probab=98.03 E-value=0.00019 Score=69.99 Aligned_cols=129 Identities=12% Similarity=0.142 Sum_probs=71.0
Q ss_pred eEEEEeccCCCchhHHHHHHHHhhccc-e-eeEEEEeehhhhhhcCChHHHHHHHHHHHhcCCCCCCchhhcHHHHHHHh
Q 009306 212 YKLGIWGIGGIGKTTIAGAIFNKISRH-F-SGSYFARNVREAEETCRLGDLRQQLLSTLLNDGNVKNFLNTDLNFQSRRL 289 (538)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~~~~~-f-~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~~l 289 (538)
..+.++|++|+|||++|+.++...... + ...-|+... ... +.....+.. .......+.+
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~--------~~~----l~~~~~g~~-----~~~~~~~l~~-- 120 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVT--------RDD----LVGQYIGHT-----APKTKEVLKK-- 120 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEec--------HHH----HHHHHhccc-----hHHHHHHHHH--
Confidence 348899999999999999998864321 1 111122200 111 111111110 0111111211
Q ss_pred cCCCeEEEEecCCCh-----------HHHHHHhcCcCCCCCCCEEEEeccchhhhhh------c--CCCeeEEcCCCCHH
Q 009306 290 TRKKVLIVFDDVDHP-----------RQIKILVGRLDLFASGSRIIITTRDRQVLAN------C--GVDEVYQMEELVHD 350 (538)
Q Consensus 290 ~~k~~LlVlDdv~~~-----------~~~~~l~~~l~~~~~~~~iiiTtR~~~~~~~------~--~~~~~~~l~~L~~~ 350 (538)
...-+|+||+++.. +....+...+.....+.+||+++........ + .....+.+++++.+
T Consensus 121 -a~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~ 199 (287)
T CHL00181 121 -AMGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPE 199 (287)
T ss_pred -ccCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHH
Confidence 12359999999642 3345555544443455667777654322110 1 23457899999999
Q ss_pred HHHHHHHhhh
Q 009306 351 DALRLFSRHA 360 (538)
Q Consensus 351 ea~~Lf~~~~ 360 (538)
|..+++...+
T Consensus 200 el~~I~~~~l 209 (287)
T CHL00181 200 ELLQIAKIML 209 (287)
T ss_pred HHHHHHHHHH
Confidence 9999998887
No 124
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.01 E-value=5.1e-05 Score=64.85 Aligned_cols=23 Identities=35% Similarity=0.472 Sum_probs=21.3
Q ss_pred EEEeccCCCchhHHHHHHHHhhc
Q 009306 214 LGIWGIGGIGKTTIAGAIFNKIS 236 (538)
Q Consensus 214 v~I~G~~GiGKTtLa~~~~~~~~ 236 (538)
|.|+|++|+|||++|+.+++.+.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG 23 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc
Confidence 57999999999999999999875
No 125
>CHL00195 ycf46 Ycf46; Provisional
Probab=98.00 E-value=0.00014 Score=75.85 Aligned_cols=175 Identities=16% Similarity=0.151 Sum_probs=94.6
Q ss_pred CCceeccchhHHHHHhh---hc-----CCCCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhhcCChHH
Q 009306 188 EDLVGVRLPMKEIESLL---RT-----GSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEETCRLGD 259 (538)
Q Consensus 188 ~~~vGR~~~l~~l~~~L---~~-----~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 259 (538)
.++-|.+...+.+.... .. +-...+-+.++|++|+|||.+|+.++......| +..+...
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~----~~l~~~~--------- 294 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPL----LRLDVGK--------- 294 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCE----EEEEhHH---------
Confidence 45778776665555421 10 223456799999999999999999999865432 1111110
Q ss_pred HHHHHHHHHhcCCCCCCchhhcHHHHHHHhcCCCeEEEEecCCChH--------------HHHHHhcCcCCCCCCCEEEE
Q 009306 260 LRQQLLSTLLNDGNVKNFLNTDLNFQSRRLTRKKVLIVFDDVDHPR--------------QIKILVGRLDLFASGSRIII 325 (538)
Q Consensus 260 l~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--------------~~~~l~~~l~~~~~~~~iii 325 (538)
+.....+ .........+...-...|++|+||++|..- .+..++..+.....+.-||.
T Consensus 295 ----l~~~~vG-----ese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIa 365 (489)
T CHL00195 295 ----LFGGIVG-----ESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVA 365 (489)
T ss_pred ----hcccccC-----hHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEE
Confidence 0000000 001111111222223578999999996320 11222222222233455666
Q ss_pred eccchhhhh-----hcCCCeeEEcCCCCHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhcCCc
Q 009306 326 TTRDRQVLA-----NCGVDEVYQMEELVHDDALRLFSRHAFGGDHPHESHTELACKTIKYARGVP 385 (538)
Q Consensus 326 TtR~~~~~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 385 (538)
||.+...+. ....+..+.++..+.++-.++|..+..+.. +..........+++.+.|..
T Consensus 366 TTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~-~~~~~~~dl~~La~~T~GfS 429 (489)
T CHL00195 366 TANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFR-PKSWKKYDIKKLSKLSNKFS 429 (489)
T ss_pred ecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcC-CCcccccCHHHHHhhcCCCC
Confidence 776553221 123567888999999999999988873322 11111223567777777764
No 126
>PRK08116 hypothetical protein; Validated
Probab=97.95 E-value=5.8e-05 Score=72.96 Aligned_cols=102 Identities=26% Similarity=0.352 Sum_probs=56.5
Q ss_pred eEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhhcCChHHHHHHHHHHHhcCCCCCCchhhcHHHHHHHhcC
Q 009306 212 YKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEETCRLGDLRQQLLSTLLNDGNVKNFLNTDLNFQSRRLTR 291 (538)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~ 291 (538)
..+.|+|.+|+|||.||.++++.+..+...++|+. ...++..+........ ......+.+.+.+
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~----------~~~ll~~i~~~~~~~~------~~~~~~~~~~l~~ 178 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVN----------FPQLLNRIKSTYKSSG------KEDENEIIRSLVN 178 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE----------HHHHHHHHHHHHhccc------cccHHHHHHHhcC
Confidence 45899999999999999999998776544455554 2223333333322110 0111223334444
Q ss_pred CCeEEEEecCC--Ch--HHHHHHhcCcC-CCCCCCEEEEeccch
Q 009306 292 KKVLIVFDDVD--HP--RQIKILVGRLD-LFASGSRIIITTRDR 330 (538)
Q Consensus 292 k~~LlVlDdv~--~~--~~~~~l~~~l~-~~~~~~~iiiTtR~~ 330 (538)
-. ||||||+. .. .....+...+. ....+..+||||...
T Consensus 179 ~d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 179 AD-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred CC-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 44 89999993 22 12222322222 113456788888644
No 127
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.94 E-value=1.2e-05 Score=76.45 Aligned_cols=93 Identities=18% Similarity=0.149 Sum_probs=57.7
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhhcc-ceeeEEEEeehhhhhhcCChHHHHHHHHHHHhcCCCC-C--C---chhhcH
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKISR-HFSGSYFARNVREAEETCRLGDLRQQLLSTLLNDGNV-K--N---FLNTDL 282 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~-~--~---~~~~~~ 282 (538)
....++|.|++|+|||||++.+++.+.. +|+..+|+..+.+ ....+.++++.+...+...... . . ......
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~e--r~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~ 92 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDE--RPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVL 92 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccC--CCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHH
Confidence 3456899999999999999999998754 5788888774433 1346777777773322211111 1 0 111112
Q ss_pred HHHHHH-hcCCCeEEEEecCCCh
Q 009306 283 NFQSRR-LTRKKVLIVFDDVDHP 304 (538)
Q Consensus 283 ~~l~~~-l~~k~~LlVlDdv~~~ 304 (538)
...... -.++++++++|++...
T Consensus 93 ~~a~~~~~~G~~vll~iDei~r~ 115 (249)
T cd01128 93 EKAKRLVEHGKDVVILLDSITRL 115 (249)
T ss_pred HHHHHHHHCCCCEEEEEECHHHh
Confidence 222222 2478999999998543
No 128
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=7e-05 Score=71.30 Aligned_cols=80 Identities=16% Similarity=0.217 Sum_probs=48.8
Q ss_pred ceEEEEeccCCCchhHHHHHHHHhhc----cceeeEEEEeehhhhhhcCChHHHHHHHHHHHhcCCCCCCchhhcHHHHH
Q 009306 211 VYKLGIWGIGGIGKTTIAGAIFNKIS----RHFSGSYFARNVREAEETCRLGDLRQQLLSTLLNDGNVKNFLNTDLNFQS 286 (538)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~----~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~ 286 (538)
.|++.++||||.|||+|++++++++. ..|..+.-+. . ...+++.+-++.-+ ..+..+...+.
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liE----i----nshsLFSKWFsESg------KlV~kmF~kI~ 242 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIE----I----NSHSLFSKWFSESG------KLVAKMFQKIQ 242 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEE----E----ehhHHHHHHHhhhh------hHHHHHHHHHH
Confidence 57899999999999999999999643 3454444443 1 11222222222222 23444555566
Q ss_pred HHhcCCC--eEEEEecCCCh
Q 009306 287 RRLTRKK--VLIVFDDVDHP 304 (538)
Q Consensus 287 ~~l~~k~--~LlVlDdv~~~ 304 (538)
+.+.++. +++.+|+|++.
T Consensus 243 ELv~d~~~lVfvLIDEVESL 262 (423)
T KOG0744|consen 243 ELVEDRGNLVFVLIDEVESL 262 (423)
T ss_pred HHHhCCCcEEEEEeHHHHHH
Confidence 6665555 56678999754
No 129
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=97.91 E-value=0.00025 Score=73.55 Aligned_cols=187 Identities=17% Similarity=0.191 Sum_probs=112.4
Q ss_pred CCCCCceeccchhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhccc----ee--eEEEEeehhhhhhcCChH
Q 009306 185 SENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRH----FS--GSYFARNVREAEETCRLG 258 (538)
Q Consensus 185 ~~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~----f~--~~~~~~~~~~~~~~~~~~ 258 (538)
....+++|.+..+..|...+..+. -......+|+.|+||||+|+.++..+-.. .. +.|..+ ...... ...
T Consensus 13 ~~F~evvGQe~v~~~L~nal~~~r-i~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~C--k~I~~g-~~~ 88 (515)
T COG2812 13 KTFDDVVGQEHVVKTLSNALENGR-IAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISC--KEINEG-SLI 88 (515)
T ss_pred ccHHHhcccHHHHHHHHHHHHhCc-chhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhh--HhhhcC-Ccc
Confidence 344778999999999999887532 24457789999999999999999854221 11 111111 111111 000
Q ss_pred HHHHHHHHHHhcCCCCCCchhhcHHHHHHHh-----cCCCeEEEEecCC--ChHHHHHHhcCcCCCCCCCEEEEeccchh
Q 009306 259 DLRQQLLSTLLNDGNVKNFLNTDLNFQSRRL-----TRKKVLIVFDDVD--HPRQIKILVGRLDLFASGSRIIITTRDRQ 331 (538)
Q Consensus 259 ~l~~~l~~~l~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~--~~~~~~~l~~~l~~~~~~~~iiiTtR~~~ 331 (538)
++.. +..... ..+++..+ +.+.. .++.=+.|||+|+ +...+.+++..+..-.++...|+.|.+..
T Consensus 89 DviE-----iDaASn--~gVddiR~-i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~ 160 (515)
T COG2812 89 DVIE-----IDAASN--TGVDDIRE-IIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQ 160 (515)
T ss_pred cchh-----hhhhhc--cChHHHHH-HHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcC
Confidence 0000 000000 11222111 22222 2344588999996 44678889888876667777776666552
Q ss_pred h-h-hhcCCCeeEEcCCCCHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhcCCc
Q 009306 332 V-L-ANCGVDEVYQMEELVHDDALRLFSRHAFGGDHPHESHTELACKTIKYARGVP 385 (538)
Q Consensus 332 ~-~-~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 385 (538)
- . +-+...+.|.++.++.++....+...+ ....-..+.+....+++..+|..
T Consensus 161 Kip~TIlSRcq~f~fkri~~~~I~~~L~~i~--~~E~I~~e~~aL~~ia~~a~Gs~ 214 (515)
T COG2812 161 KIPNTILSRCQRFDFKRLDLEEIAKHLAAIL--DKEGINIEEDALSLIARAAEGSL 214 (515)
T ss_pred cCchhhhhccccccccCCCHHHHHHHHHHHH--HhcCCccCHHHHHHHHHHcCCCh
Confidence 2 2 122334689999999999999988877 33334455677777888887765
No 130
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.91 E-value=0.00014 Score=80.79 Aligned_cols=173 Identities=17% Similarity=0.164 Sum_probs=94.1
Q ss_pred CCceeccchhHHHHHhhhc-----------CCCCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhhcCC
Q 009306 188 EDLVGVRLPMKEIESLLRT-----------GSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEETCR 256 (538)
Q Consensus 188 ~~~vGR~~~l~~l~~~L~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 256 (538)
+++.|.+..++.+.+++.. +-...+.+.|+|++|+|||+||+.+++.....| +.+. ..+....
T Consensus 178 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~---i~i~-~~~i~~~-- 251 (733)
T TIGR01243 178 EDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYF---ISIN-GPEIMSK-- 251 (733)
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeE---EEEe-cHHHhcc--
Confidence 4588999999988876632 112345689999999999999999998765432 2222 1110000
Q ss_pred hHHHHHHHHHHHhcCCCCCCchhhcHHHHHHHhcCCCeEEEEecCCCh-------------HHHHHHhcCcCCCC-CCCE
Q 009306 257 LGDLRQQLLSTLLNDGNVKNFLNTDLNFQSRRLTRKKVLIVFDDVDHP-------------RQIKILVGRLDLFA-SGSR 322 (538)
Q Consensus 257 ~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-------------~~~~~l~~~l~~~~-~~~~ 322 (538)
.. ..........+.......+.+|+|||++.. .....+...+.... .+..
T Consensus 252 -----------~~-----g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~v 315 (733)
T TIGR01243 252 -----------YY-----GESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRV 315 (733)
T ss_pred -----------cc-----cHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCE
Confidence 00 000111112222233456789999998542 11233333333222 2333
Q ss_pred EEE-eccchhhh-hhc----CCCeeEEcCCCCHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhcCCc
Q 009306 323 III-TTRDRQVL-ANC----GVDEVYQMEELVHDDALRLFSRHAFGGDHPHESHTELACKTIKYARGVP 385 (538)
Q Consensus 323 iii-TtR~~~~~-~~~----~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 385 (538)
++| +|.....+ ..+ .....+.++..+.++-.+++..+.-..... .......+++.+.|..
T Consensus 316 ivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~---~d~~l~~la~~t~G~~ 381 (733)
T TIGR01243 316 IVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLA---EDVDLDKLAEVTHGFV 381 (733)
T ss_pred EEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCc---cccCHHHHHHhCCCCC
Confidence 444 44433211 111 234578888889999888888665221111 1223567778887764
No 131
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.90 E-value=0.00058 Score=67.35 Aligned_cols=91 Identities=14% Similarity=0.136 Sum_probs=63.6
Q ss_pred CCeEEEEecCCCh--HHHHHHhcCcCCCCCCCEEEEeccch-hhhhhcC-CCeeEEcCCCCHHHHHHHHHhhhcCCCCCC
Q 009306 292 KKVLIVFDDVDHP--RQIKILVGRLDLFASGSRIIITTRDR-QVLANCG-VDEVYQMEELVHDDALRLFSRHAFGGDHPH 367 (538)
Q Consensus 292 k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~iiiTtR~~-~~~~~~~-~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~ 367 (538)
+.-++|||+++.. ....+++..+..-.+++.+|++|.+. .+++.+. ....+.+.+++.+++.+.+....
T Consensus 113 ~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~~------- 185 (319)
T PRK08769 113 IAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQG------- 185 (319)
T ss_pred CcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHcC-------
Confidence 4558999999754 55677777776656777777777653 4444432 34678999999999999887532
Q ss_pred CchHHHHHHHHHHhcCCcHHHHH
Q 009306 368 ESHTELACKTIKYARGVPLALEV 390 (538)
Q Consensus 368 ~~~~~~~~~i~~~~~G~PLal~~ 390 (538)
.....+..++..++|.|+....
T Consensus 186 -~~~~~a~~~~~l~~G~p~~A~~ 207 (319)
T PRK08769 186 -VSERAAQEALDAARGHPGLAAQ 207 (319)
T ss_pred -CChHHHHHHHHHcCCCHHHHHH
Confidence 1133466789999999975533
No 132
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.90 E-value=5.3e-05 Score=81.08 Aligned_cols=56 Identities=20% Similarity=0.221 Sum_probs=45.2
Q ss_pred ccCCCCCCCceeccchhHHHHHhhhcCC---CCceEEEEeccCCCchhHHHHHHHHhhc
Q 009306 181 DTFHSENEDLVGVRLPMKEIESLLRTGS---TNVYKLGIWGIGGIGKTTIAGAIFNKIS 236 (538)
Q Consensus 181 ~~~~~~~~~~vGR~~~l~~l~~~L~~~~---~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (538)
...|.....++|.+..++++..++.... ...++++|+|++|+||||+++.++..+.
T Consensus 77 KyrP~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~ 135 (637)
T TIGR00602 77 KYKPETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELG 135 (637)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3445666889999999999999987532 3356799999999999999999998654
No 133
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e.g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].
Probab=97.88 E-value=1.8e-05 Score=69.56 Aligned_cols=64 Identities=17% Similarity=0.359 Sum_probs=55.5
Q ss_pred cEEEcCccccc-ccchHHHHHHHHhhC-CCeeEeeC-CCC--CCCcchHHHHHHHHhcceEEEEeccCc
Q 009306 19 DVFLSFGGEDT-RESFTSHLYSALSRE-TVETFIDD-DLR--RGDEISQSLLDAIEASSISIIIFSESY 82 (538)
Q Consensus 19 dvFiSy~~~D~-~~~~~~~l~~~l~~~-g~~~~~d~-~~~--~g~~~~~~i~~~i~~s~~~i~v~S~~y 82 (538)
-|||||++... ...+|..|...|+.. |+.|.+|. +.. ++..+..++.+.+++++.+|+|+||.|
T Consensus 2 kVfI~Ys~d~~~h~~~V~~la~~L~~~~g~~V~lD~~~~~~i~~~g~~~W~~~~~~~ad~Vliv~S~~~ 70 (150)
T PF08357_consen 2 KVFISYSHDSEEHKEWVLALAEFLRQNCGIDVILDQWELNEIARQGPPRWMERQIREADKVLIVCSPGY 70 (150)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHHHHhccCCceeecHHhhcccccCCHHHHHHHHHhcCCEEEEEeccch
Confidence 49999998543 447799999999999 99999998 664 477899999999999999999999654
No 134
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.88 E-value=0.00039 Score=69.48 Aligned_cols=146 Identities=12% Similarity=0.117 Sum_probs=87.9
Q ss_pred Ccee-ccchhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhccc---------------------eeeEEEEe
Q 009306 189 DLVG-VRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRH---------------------FSGSYFAR 246 (538)
Q Consensus 189 ~~vG-R~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~---------------------f~~~~~~~ 246 (538)
.++| -+..++.|...+..+ .-.....++|+.|+|||++|+.++..+-.. ++...++.
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~-~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i~ 84 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKN-RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLVA 84 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEec
Confidence 4566 666677777777643 235567999999999999999998865321 11111111
Q ss_pred ehhhhhhcCChHHHHHHHHHHHhcCCCCCCchhhcHHHHHHH----hcCCCeEEEEecCCCh--HHHHHHhcCcCCCCCC
Q 009306 247 NVREAEETCRLGDLRQQLLSTLLNDGNVKNFLNTDLNFQSRR----LTRKKVLIVFDDVDHP--RQIKILVGRLDLFASG 320 (538)
Q Consensus 247 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~ 320 (538)
. ......+++..+.+... ..+.+-++|+|+++.. .....++..+...+++
T Consensus 85 ~------------------------~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~ 140 (329)
T PRK08058 85 P------------------------DGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGG 140 (329)
T ss_pred c------------------------ccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCC
Confidence 0 00001112222211111 1234458999999744 4567777777765677
Q ss_pred CEEEEeccch-hhhhhc-CCCeeEEcCCCCHHHHHHHHHhh
Q 009306 321 SRIIITTRDR-QVLANC-GVDEVYQMEELVHDDALRLFSRH 359 (538)
Q Consensus 321 ~~iiiTtR~~-~~~~~~-~~~~~~~l~~L~~~ea~~Lf~~~ 359 (538)
+.+|++|.+. .+.+.+ .....+++.+++.++..+.+...
T Consensus 141 ~~~Il~t~~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 141 TTAILLTENKHQILPTILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred ceEEEEeCChHhCcHHHHhhceeeeCCCCCHHHHHHHHHHc
Confidence 7777777654 333333 23468999999999998888653
No 135
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.84 E-value=8.5e-05 Score=63.88 Aligned_cols=35 Identities=29% Similarity=0.300 Sum_probs=27.4
Q ss_pred eEEEEeccCCCchhHHHHHHHHhhccceeeEEEEe
Q 009306 212 YKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFAR 246 (538)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 246 (538)
+.+.|+|++|+||||+++.++..+......++++.
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~ 37 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYID 37 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEEC
Confidence 46899999999999999999998766543344443
No 136
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.83 E-value=0.00057 Score=64.78 Aligned_cols=36 Identities=22% Similarity=0.231 Sum_probs=29.1
Q ss_pred ceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEe
Q 009306 211 VYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFAR 246 (538)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 246 (538)
...+.++|.+|+|||+|+.++++.+......++++.
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it 134 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIIT 134 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 346899999999999999999998766555555554
No 137
>PRK08181 transposase; Validated
Probab=97.82 E-value=8e-05 Score=71.62 Aligned_cols=35 Identities=29% Similarity=0.268 Sum_probs=27.8
Q ss_pred eEEEEeccCCCchhHHHHHHHHhhccceeeEEEEe
Q 009306 212 YKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFAR 246 (538)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 246 (538)
.-+.|+|++|+|||.||.++++....+...+.|+.
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~ 141 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTR 141 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeee
Confidence 34899999999999999999987765544455554
No 138
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.82 E-value=0.00023 Score=79.23 Aligned_cols=173 Identities=17% Similarity=0.198 Sum_probs=95.9
Q ss_pred CCceeccchhHHHHHhhhc-----------CCCCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhhcCC
Q 009306 188 EDLVGVRLPMKEIESLLRT-----------GSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEETCR 256 (538)
Q Consensus 188 ~~~vGR~~~l~~l~~~L~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 256 (538)
.++.|.+...+.|.+.+.- +....+-+.++|++|+|||+||+++++.....| +.+. ..
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~f---i~v~-~~------- 521 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANF---IAVR-GP------- 521 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCE---EEEe-hH-------
Confidence 4567888777777665431 112345589999999999999999999865443 1111 10
Q ss_pred hHHHHHHHHHHHhcCCCCCCchhhcHHHHHHHhcCCCeEEEEecCCCh--------------HHHHHHhcCcCCC--CCC
Q 009306 257 LGDLRQQLLSTLLNDGNVKNFLNTDLNFQSRRLTRKKVLIVFDDVDHP--------------RQIKILVGRLDLF--ASG 320 (538)
Q Consensus 257 ~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--------------~~~~~l~~~l~~~--~~~ 320 (538)
.+++...+ .............-...+.+|+||+++.. ..+..++..+... ..+
T Consensus 522 ------~l~~~~vG-----ese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~ 590 (733)
T TIGR01243 522 ------EILSKWVG-----ESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSN 590 (733)
T ss_pred ------HHhhcccC-----cHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCC
Confidence 11111111 01111111222222457899999998642 1233344433321 234
Q ss_pred CEEEEeccchhhhhh-----cCCCeeEEcCCCCHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhcCCc
Q 009306 321 SRIIITTRDRQVLAN-----CGVDEVYQMEELVHDDALRLFSRHAFGGDHPHESHTELACKTIKYARGVP 385 (538)
Q Consensus 321 ~~iiiTtR~~~~~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 385 (538)
.-||.||.....+.. -..+..+.++..+.++-.++|..+..+..... ......+++.+.|.-
T Consensus 591 v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~---~~~l~~la~~t~g~s 657 (733)
T TIGR01243 591 VVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAE---DVDLEELAEMTEGYT 657 (733)
T ss_pred EEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCc---cCCHHHHHHHcCCCC
Confidence 456666655433221 13456888999999999999977652221111 112456777777764
No 139
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.82 E-value=0.0002 Score=66.28 Aligned_cols=172 Identities=16% Similarity=0.227 Sum_probs=99.7
Q ss_pred CCceeccchhHHH---HHhhhc----CCCCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhhcCChHHH
Q 009306 188 EDLVGVRLPMKEI---ESLLRT----GSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEETCRLGDL 260 (538)
Q Consensus 188 ~~~vGR~~~l~~l---~~~L~~----~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l 260 (538)
++.||.+....+. .+.|.. +....+-|..+|++|.|||.+|++++++.+.-| .....
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~----l~vka------------ 184 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPL----LLVKA------------ 184 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCce----EEech------------
Confidence 5788888766544 344543 334577899999999999999999998865432 11100
Q ss_pred HHHHHHHHhcCCCCCCchhhcHHHHHHH-hcCCCeEEEEecCCCh--------------HHHHHHhcCcCCC--CCCCEE
Q 009306 261 RQQLLSTLLNDGNVKNFLNTDLNFQSRR-LTRKKVLIVFDDVDHP--------------RQIKILVGRLDLF--ASGSRI 323 (538)
Q Consensus 261 ~~~l~~~l~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~--------------~~~~~l~~~l~~~--~~~~~i 323 (538)
.+++....+ +....+..+.++ -+..|+++.||++|.. +.+.+++..+... +.|...
T Consensus 185 -t~liGehVG------dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvt 257 (368)
T COG1223 185 -TELIGEHVG------DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVT 257 (368)
T ss_pred -HHHHHHHhh------hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEE
Confidence 111111111 111111222222 2457999999998642 3355666555433 345555
Q ss_pred EEeccchhhhhhc---CCCeeEEcCCCCHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhcCCc
Q 009306 324 IITTRDRQVLANC---GVDEVYQMEELVHDDALRLFSRHAFGGDHPHESHTELACKTIKYARGVP 385 (538)
Q Consensus 324 iiTtR~~~~~~~~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 385 (538)
|-.|.+...+... .....++..--+.+|-..++...+ ..-|.+.... .+.++++++|..
T Consensus 258 IaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~--k~~Plpv~~~-~~~~~~~t~g~S 319 (368)
T COG1223 258 IAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYA--KKFPLPVDAD-LRYLAAKTKGMS 319 (368)
T ss_pred EeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHH--HhCCCccccC-HHHHHHHhCCCC
Confidence 6556555443321 234567778888899999998887 2333322222 567777777764
No 140
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.81 E-value=3.8e-05 Score=76.41 Aligned_cols=92 Identities=16% Similarity=0.161 Sum_probs=57.1
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhhcc-ceeeEEEEeehhhhhhcCChHHHHHHHHHHHhcCC-CCCC--ch---hhcH
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKISR-HFSGSYFARNVREAEETCRLGDLRQQLLSTLLNDG-NVKN--FL---NTDL 282 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~-~~~~--~~---~~~~ 282 (538)
..+..+|+|++|+|||||++.+++.+.. +|+..+|+..+.+. ...+.++++.+...+.... +... .. ....
T Consensus 168 kGQR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER--~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~i 245 (416)
T PRK09376 168 KGQRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDER--PEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVI 245 (416)
T ss_pred cCceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCc--hhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHH
Confidence 3445899999999999999999997765 58888898865542 2356667777653222111 1110 00 0111
Q ss_pred HHHHHH-hcCCCeEEEEecCCC
Q 009306 283 NFQSRR-LTRKKVLIVFDDVDH 303 (538)
Q Consensus 283 ~~l~~~-l~~k~~LlVlDdv~~ 303 (538)
+.-... ..++.++|++|++..
T Consensus 246 e~Ae~~~e~G~dVlL~iDsItR 267 (416)
T PRK09376 246 EKAKRLVEHGKDVVILLDSITR 267 (416)
T ss_pred HHHHHHHHcCCCEEEEEEChHH
Confidence 111111 257899999999954
No 141
>PRK12377 putative replication protein; Provisional
Probab=97.78 E-value=0.0001 Score=70.03 Aligned_cols=36 Identities=22% Similarity=0.202 Sum_probs=29.4
Q ss_pred ceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEe
Q 009306 211 VYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFAR 246 (538)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 246 (538)
...+.|+|++|+|||+||.++++.+......+.|+.
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~ 136 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVT 136 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEE
Confidence 356899999999999999999998876655556654
No 142
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.78 E-value=0.001 Score=64.22 Aligned_cols=25 Identities=36% Similarity=0.458 Sum_probs=21.6
Q ss_pred EEEEeccCCCchhHHHHHHHHhhcc
Q 009306 213 KLGIWGIGGIGKTTIAGAIFNKISR 237 (538)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~~~~ 237 (538)
.+.|.|++|+|||+||+.++.....
T Consensus 23 ~vLL~G~~GtGKT~lA~~la~~lg~ 47 (262)
T TIGR02640 23 PVHLRGPAGTGKTTLAMHVARKRDR 47 (262)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 4789999999999999999986543
No 143
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.76 E-value=0.0014 Score=65.45 Aligned_cols=89 Identities=13% Similarity=0.165 Sum_probs=62.6
Q ss_pred CCCeEEEEecCCC--hHHHHHHhcCcCCCCCCCEEEEeccch-hhhhhc-CCCeeEEcCCCCHHHHHHHHHhhhcCCCCC
Q 009306 291 RKKVLIVFDDVDH--PRQIKILVGRLDLFASGSRIIITTRDR-QVLANC-GVDEVYQMEELVHDDALRLFSRHAFGGDHP 366 (538)
Q Consensus 291 ~k~~LlVlDdv~~--~~~~~~l~~~l~~~~~~~~iiiTtR~~-~~~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~ 366 (538)
++.=++|||+++. ......++..+..-.++..+|++|.+. .+++.+ ...+.+.+.+++.+++.+.+....
T Consensus 107 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq~~~~~~~~~~~~~~~L~~~~------ 180 (334)
T PRK07993 107 GGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCRLHYLAPPPEQYALTWLSREV------ 180 (334)
T ss_pred CCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccccccCCCCCHHHHHHHHHHcc------
Confidence 4555899999974 456778888777666677776666654 455443 234578899999999999886542
Q ss_pred CCchHHHHHHHHHHhcCCcH
Q 009306 367 HESHTELACKTIKYARGVPL 386 (538)
Q Consensus 367 ~~~~~~~~~~i~~~~~G~PL 386 (538)
....+.+..++..++|.|.
T Consensus 181 -~~~~~~a~~~~~la~G~~~ 199 (334)
T PRK07993 181 -TMSQDALLAALRLSAGAPG 199 (334)
T ss_pred -CCCHHHHHHHHHHcCCCHH
Confidence 1223446788999999995
No 144
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.75 E-value=0.00048 Score=67.88 Aligned_cols=151 Identities=23% Similarity=0.248 Sum_probs=81.9
Q ss_pred CCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhh--cCChHHHHHHHHHHHhcCCCCCCchhhcHHHHH
Q 009306 209 TNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEE--TCRLGDLRQQLLSTLLNDGNVKNFLNTDLNFQS 286 (538)
Q Consensus 209 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~--~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~ 286 (538)
...+.++|||++|+|||.+|++++.+....| ......+... .-.....+++++.. ..
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~~~----i~vsa~eL~sk~vGEsEk~IR~~F~~-----------------A~ 204 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGIEP----IVMSAGELESENAGEPGKLIRQRYRE-----------------AA 204 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCCCe----EEEEHHHhhcCcCCcHHHHHHHHHHH-----------------HH
Confidence 3467899999999999999999999876543 2221211111 01122222222221 11
Q ss_pred HH--hcCCCeEEEEecCCCh------------HHH--HHHhcCcC--------------CCCCCCEEEEeccchhhhhh-
Q 009306 287 RR--LTRKKVLIVFDDVDHP------------RQI--KILVGRLD--------------LFASGSRIIITTRDRQVLAN- 335 (538)
Q Consensus 287 ~~--l~~k~~LlVlDdv~~~------------~~~--~~l~~~l~--------------~~~~~~~iiiTtR~~~~~~~- 335 (538)
+. -+.++++|+||++|.. .++ ..|+..+. ....+..||.||.....+..
T Consensus 205 ~~a~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpA 284 (413)
T PLN00020 205 DIIKKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAP 284 (413)
T ss_pred HHhhccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHh
Confidence 11 1468999999998631 111 23332211 12345667888866543221
Q ss_pred -c---CCCeeEEcCCCCHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhcCCcH
Q 009306 336 -C---GVDEVYQMEELVHDDALRLFSRHAFGGDHPHESHTELACKTIKYARGVPL 386 (538)
Q Consensus 336 -~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PL 386 (538)
. ..+..| ..-+.++-.+++..+. +..... .....++++...|-|+
T Consensus 285 LlRpGRfDk~i--~lPd~e~R~eIL~~~~-r~~~l~---~~dv~~Lv~~f~gq~~ 333 (413)
T PLN00020 285 LIRDGRMEKFY--WAPTREDRIGVVHGIF-RDDGVS---REDVVKLVDTFPGQPL 333 (413)
T ss_pred HcCCCCCCcee--CCCCHHHHHHHHHHHh-ccCCCC---HHHHHHHHHcCCCCCc
Confidence 1 122333 4456677777777665 222222 3556677777777765
No 145
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.73 E-value=0.0022 Score=63.41 Aligned_cols=89 Identities=9% Similarity=0.135 Sum_probs=63.1
Q ss_pred CCCeEEEEecCCCh--HHHHHHhcCcCCCCCCCEEEEeccch-hhhhhcC-CCeeEEcCCCCHHHHHHHHHhhhcCCCCC
Q 009306 291 RKKVLIVFDDVDHP--RQIKILVGRLDLFASGSRIIITTRDR-QVLANCG-VDEVYQMEELVHDDALRLFSRHAFGGDHP 366 (538)
Q Consensus 291 ~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~iiiTtR~~-~~~~~~~-~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~ 366 (538)
++.=++|||+++.. ....+++..+..-.++..+|++|.+. .+++.+. ....+.+.+++.+++.+.+.... .
T Consensus 106 g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~~~~~~~~~~~~~~L~~~~--~--- 180 (325)
T PRK06871 106 GGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWLIHPPEEQQALDWLQAQS--S--- 180 (325)
T ss_pred CCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEEeCCCCCHHHHHHHHHHHh--c---
Confidence 34458889999754 56778888777666777777777654 4454432 34688999999999999988764 1
Q ss_pred CCchHHHHHHHHHHhcCCcH
Q 009306 367 HESHTELACKTIKYARGVPL 386 (538)
Q Consensus 367 ~~~~~~~~~~i~~~~~G~PL 386 (538)
.....+..++..++|.|+
T Consensus 181 --~~~~~~~~~~~l~~g~p~ 198 (325)
T PRK06871 181 --AEISEILTALRINYGRPL 198 (325)
T ss_pred --cChHHHHHHHHHcCCCHH
Confidence 112245677889999995
No 146
>PRK04132 replication factor C small subunit; Provisional
Probab=97.71 E-value=0.00092 Score=73.76 Aligned_cols=153 Identities=14% Similarity=0.156 Sum_probs=92.6
Q ss_pred Eec--cCCCchhHHHHHHHHhhcc-ceeeEEEEeehhhhhhcCChHHHHHHHHHHHhcCCCCCCchhhcHHHHHHHhcCC
Q 009306 216 IWG--IGGIGKTTIAGAIFNKISR-HFSGSYFARNVREAEETCRLGDLRQQLLSTLLNDGNVKNFLNTDLNFQSRRLTRK 292 (538)
Q Consensus 216 I~G--~~GiGKTtLa~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~k 292 (538)
+.| |.++||||+|..+++++-. .+...+...+. ++..+.. ..+.+...+...... -..+
T Consensus 569 ~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNA---Sd~rgid-~IR~iIk~~a~~~~~--------------~~~~ 630 (846)
T PRK04132 569 IGGNLPTVLHNTTAALALARELFGENWRHNFLELNA---SDERGIN-VIREKVKEFARTKPI--------------GGAS 630 (846)
T ss_pred hcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeC---CCcccHH-HHHHHHHHHHhcCCc--------------CCCC
Confidence 347 8899999999999998632 23222222222 2222332 233333322211110 0123
Q ss_pred CeEEEEecCCCh--HHHHHHhcCcCCCCCCCEEEEeccch-hhhhhc-CCCeeEEcCCCCHHHHHHHHHhhhcCCCCCCC
Q 009306 293 KVLIVFDDVDHP--RQIKILVGRLDLFASGSRIIITTRDR-QVLANC-GVDEVYQMEELVHDDALRLFSRHAFGGDHPHE 368 (538)
Q Consensus 293 ~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~iiiTtR~~-~~~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~ 368 (538)
.-++|||+++.. .....|...+......+++|+++.+. .+...+ .....+++.+++.++..+.+...+... ...
T Consensus 631 ~KVvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~E--gi~ 708 (846)
T PRK04132 631 FKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENE--GLE 708 (846)
T ss_pred CEEEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhc--CCC
Confidence 469999999865 46677777766556677777766554 333332 234689999999999998887765221 122
Q ss_pred chHHHHHHHHHHhcCCcHHH
Q 009306 369 SHTELACKTIKYARGVPLAL 388 (538)
Q Consensus 369 ~~~~~~~~i~~~~~G~PLal 388 (538)
..++....++..++|.+...
T Consensus 709 i~~e~L~~Ia~~s~GDlR~A 728 (846)
T PRK04132 709 LTEEGLQAILYIAEGDMRRA 728 (846)
T ss_pred CCHHHHHHHHHHcCCCHHHH
Confidence 34678889999999988443
No 147
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.70 E-value=6.4e-05 Score=75.18 Aligned_cols=93 Identities=15% Similarity=0.117 Sum_probs=58.9
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhhccc-eeeEEEEeehhhhhhcCChHHHHHHHHHHHhcCCCC-C-Cc----hhhcH
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKISRH-FSGSYFARNVREAEETCRLGDLRQQLLSTLLNDGNV-K-NF----LNTDL 282 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~-~-~~----~~~~~ 282 (538)
..+.++|+|++|.|||||++.+++.+... |+..+|+..+.+ ....+.++++.+...+....-. . .. .....
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgE--R~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~ 244 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDE--RPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVI 244 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCC--CCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHH
Confidence 34569999999999999999999987665 888888875433 2346777888774432221111 1 00 11111
Q ss_pred HHHHHH-hcCCCeEEEEecCCCh
Q 009306 283 NFQSRR-LTRKKVLIVFDDVDHP 304 (538)
Q Consensus 283 ~~l~~~-l~~k~~LlVlDdv~~~ 304 (538)
+..... -.+++++|++|++...
T Consensus 245 e~Ae~~~~~GkdVVLlIDEitR~ 267 (415)
T TIGR00767 245 EKAKRLVEHKKDVVILLDSITRL 267 (415)
T ss_pred HHHHHHHHcCCCeEEEEEChhHH
Confidence 112222 2578999999999644
No 148
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.68 E-value=0.0041 Score=61.32 Aligned_cols=105 Identities=13% Similarity=0.178 Sum_probs=68.7
Q ss_pred CCeEEEEecCCCh--HHHHHHhcCcCCCCCCCEEEEeccch-hhhhhcC-CCeeEEcCCCCHHHHHHHHHhhhcCCCCCC
Q 009306 292 KKVLIVFDDVDHP--RQIKILVGRLDLFASGSRIIITTRDR-QVLANCG-VDEVYQMEELVHDDALRLFSRHAFGGDHPH 367 (538)
Q Consensus 292 k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~iiiTtR~~-~~~~~~~-~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~ 367 (538)
+.=++|||+++.. ....+++..+..-.+++.+|++|.+. .+++.+. ....+.+.+++.+++.+.+.... .
T Consensus 108 ~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~~~------~ 181 (319)
T PRK06090 108 GYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTPPSTAQAMQWLKGQG------I 181 (319)
T ss_pred CceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeEeCCCCCHHHHHHHHHHcC------C
Confidence 3458899999754 56777887777666777776666554 4555443 34688999999999999887542 1
Q ss_pred CchHHHHHHHHHHhcCCcHHHHHHHHHhcCCCHHHHHHHHHH
Q 009306 368 ESHTELACKTIKYARGVPLALEVLGRYLYGKRREVWENAKSK 409 (538)
Q Consensus 368 ~~~~~~~~~i~~~~~G~PLal~~~~~~L~~~~~~~~~~~l~~ 409 (538)
+ ....++..++|.|+....+ +.......++..+..
T Consensus 182 ~----~~~~~l~l~~G~p~~A~~~---~~~~~~~~~~~~~~~ 216 (319)
T PRK06090 182 T----VPAYALKLNMGSPLKTLAM---MKEGGLEKYHKLERQ 216 (319)
T ss_pred c----hHHHHHHHcCCCHHHHHHH---hCCCcHHHHHHHHHH
Confidence 1 1356788999999855443 333333444434433
No 149
>PRK09183 transposase/IS protein; Provisional
Probab=97.67 E-value=0.00018 Score=69.16 Aligned_cols=35 Identities=26% Similarity=0.239 Sum_probs=26.0
Q ss_pred eEEEEeccCCCchhHHHHHHHHhhccceeeEEEEe
Q 009306 212 YKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFAR 246 (538)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 246 (538)
..+.|+|++|+|||+||..++.........+.|+.
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~ 137 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTT 137 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 45889999999999999999887544433344443
No 150
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.66 E-value=0.00063 Score=70.25 Aligned_cols=173 Identities=15% Similarity=0.146 Sum_probs=95.1
Q ss_pred CCCceeccchhHHHHHhhhc----------CCCCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhhcCC
Q 009306 187 NEDLVGVRLPMKEIESLLRT----------GSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEETCR 256 (538)
Q Consensus 187 ~~~~vGR~~~l~~l~~~L~~----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 256 (538)
..++=|.+..+.+|.+++.. +-...+-|.+|||+|+|||.||++++.++.-.| +. .+.
T Consensus 189 f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf-----~~----isA--- 256 (802)
T KOG0733|consen 189 FSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPF-----LS----ISA--- 256 (802)
T ss_pred hhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCce-----Ee----ecc---
Confidence 35677999999999887643 112356699999999999999999999875443 22 000
Q ss_pred hHHHHHHHHHHHhcCCCCCCchhhcHHHHHHHhcCCCeEEEEecCCCh-------------HHHHHHhcCcCCC------
Q 009306 257 LGDLRQQLLSTLLNDGNVKNFLNTDLNFQSRRLTRKKVLIVFDDVDHP-------------RQIKILVGRLDLF------ 317 (538)
Q Consensus 257 ~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-------------~~~~~l~~~l~~~------ 317 (538)
-++.+.+.+ .+.+...+...+.....|++++||++|.. ..+..|+..+...
T Consensus 257 -----peivSGvSG-----ESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~ 326 (802)
T KOG0733|consen 257 -----PEIVSGVSG-----ESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTK 326 (802)
T ss_pred -----hhhhcccCc-----ccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccC
Confidence 011112111 12222233333444678999999999742 1133444333322
Q ss_pred CCCCEEEEe-ccchhhhhhc----CCCeeEEcCCCCHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhcCC
Q 009306 318 ASGSRIIIT-TRDRQVLANC----GVDEVYQMEELVHDDALRLFSRHAFGGDHPHESHTELACKTIKYARGV 384 (538)
Q Consensus 318 ~~~~~iiiT-tR~~~~~~~~----~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~ 384 (538)
+.+.-||-+ +|-..+-+.+ +.++.+.|.--+..+-.+++...+-+-..... =..++|++.+-|.
T Consensus 327 g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~---~d~~qlA~lTPGf 395 (802)
T KOG0733|consen 327 GDPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGD---FDFKQLAKLTPGF 395 (802)
T ss_pred CCCeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCC---cCHHHHHhcCCCc
Confidence 222333333 3433332222 24567778777777666766666532221111 1134566666665
No 151
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.65 E-value=0.00024 Score=64.62 Aligned_cols=55 Identities=25% Similarity=0.261 Sum_probs=43.3
Q ss_pred ccCCCCCCCceeccchhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhcc
Q 009306 181 DTFHSENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISR 237 (538)
Q Consensus 181 ~~~~~~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 237 (538)
...|..-.+.||-++-++.+.-...++ +.+-+.|.||+|+||||-+..+++++-.
T Consensus 20 KYrP~~l~dIVGNe~tv~rl~via~~g--nmP~liisGpPG~GKTTsi~~LAr~LLG 74 (333)
T KOG0991|consen 20 KYRPSVLQDIVGNEDTVERLSVIAKEG--NMPNLIISGPPGTGKTTSILCLARELLG 74 (333)
T ss_pred hhCchHHHHhhCCHHHHHHHHHHHHcC--CCCceEeeCCCCCchhhHHHHHHHHHhC
Confidence 344555578899999998888776643 4666899999999999999999987543
No 152
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.64 E-value=0.00027 Score=74.42 Aligned_cols=156 Identities=19% Similarity=0.296 Sum_probs=90.1
Q ss_pred CCCceeccchhHHHHHhhhc----CCCCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhhcCChHHHHH
Q 009306 187 NEDLVGVRLPMKEIESLLRT----GSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEETCRLGDLRQ 262 (538)
Q Consensus 187 ~~~~vGR~~~l~~l~~~L~~----~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~ 262 (538)
..+.+|.+...+.+.+.|.- +.-..++++++||+|+|||+|++.++..+...|-. +-+-.+++.+.
T Consensus 322 d~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR-~sLGGvrDEAE--------- 391 (782)
T COG0466 322 DKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVR-ISLGGVRDEAE--------- 391 (782)
T ss_pred cccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEE-EecCccccHHH---------
Confidence 35679999999999888753 23346799999999999999999999988776531 11211211111
Q ss_pred HHHHHHhcCCCCCCchh----hcHHHHHHHhcCCCeEEEEecCCCh----------HHHHHHhcCcC-CCC--------C
Q 009306 263 QLLSTLLNDGNVKNFLN----TDLNFQSRRLTRKKVLIVFDDVDHP----------RQIKILVGRLD-LFA--------S 319 (538)
Q Consensus 263 ~l~~~l~~~~~~~~~~~----~~~~~l~~~l~~k~~LlVlDdv~~~----------~~~~~l~~~l~-~~~--------~ 319 (538)
+.+... ..+. .....+++ .+.+.-+++||++|.. ..++.|-+..+ .|. .
T Consensus 392 -----IRGHRR--TYIGamPGrIiQ~mkk-a~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yD 463 (782)
T COG0466 392 -----IRGHRR--TYIGAMPGKIIQGMKK-AGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYD 463 (782)
T ss_pred -----hccccc--cccccCChHHHHHHHH-hCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccc
Confidence 001100 1111 11222222 2445668999999742 11333322211 111 1
Q ss_pred CCEEE-Eeccch-h-h-hhhcCCCeeEEcCCCCHHHHHHHHHhhh
Q 009306 320 GSRII-ITTRDR-Q-V-LANCGVDEVYQMEELVHDDALRLFSRHA 360 (538)
Q Consensus 320 ~~~ii-iTtR~~-~-~-~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 360 (538)
-|.|+ |+|-+. . + .+.++..+++++.+.+.+|-.++-.++.
T Consensus 464 LS~VmFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 464 LSKVMFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred hhheEEEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 24443 333322 1 1 2344566899999999999999888876
No 153
>PRK06526 transposase; Provisional
Probab=97.63 E-value=0.00012 Score=70.05 Aligned_cols=33 Identities=21% Similarity=0.160 Sum_probs=25.6
Q ss_pred eEEEEeccCCCchhHHHHHHHHhhccceeeEEE
Q 009306 212 YKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYF 244 (538)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~ 244 (538)
.-+.|+|++|+|||+||..++.........+.|
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f 131 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLF 131 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHCCCchhh
Confidence 458999999999999999999876554333344
No 154
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.62 E-value=0.001 Score=69.98 Aligned_cols=160 Identities=16% Similarity=0.103 Sum_probs=87.2
Q ss_pred ceEEEEeccCCCchhHHHHHHHHhhccc-eeeEEEEeehhhhhhcCChHHHHHHHHHHHhcCCCCCCchhhcHHHHHHHh
Q 009306 211 VYKLGIWGIGGIGKTTIAGAIFNKISRH-FSGSYFARNVREAEETCRLGDLRQQLLSTLLNDGNVKNFLNTDLNFQSRRL 289 (538)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~~l 289 (538)
.+-|.|.|+.|+|||+|++++++.+... +-.+.++.+.. .....+..+++-+- +.+.+.+
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~--l~~~~~e~iQk~l~-----------------~vfse~~ 491 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCST--LDGSSLEKIQKFLN-----------------NVFSEAL 491 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechh--ccchhHHHHHHHHH-----------------HHHHHHH
Confidence 4569999999999999999999987643 33344444221 11222333333222 2233456
Q ss_pred cCCCeEEEEecCCChH---------------HHHHHh----cCcCCCCCCCEEEEeccchhhh-----hhcCCCeeEEcC
Q 009306 290 TRKKVLIVFDDVDHPR---------------QIKILV----GRLDLFASGSRIIITTRDRQVL-----ANCGVDEVYQME 345 (538)
Q Consensus 290 ~~k~~LlVlDdv~~~~---------------~~~~l~----~~l~~~~~~~~iiiTtR~~~~~-----~~~~~~~~~~l~ 345 (538)
...|-+|||||++... -+..++ ......+....+|.|.....-+ ...-...+..|+
T Consensus 492 ~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ 571 (952)
T KOG0735|consen 492 WYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALP 571 (952)
T ss_pred hhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecC
Confidence 6789999999996321 112222 1111112222344444333211 111234567899
Q ss_pred CCCHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhcCC-cHHHHHH
Q 009306 346 ELVHDDALRLFSRHAFGGDHPHESHTELACKTIKYARGV-PLALEVL 391 (538)
Q Consensus 346 ~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~-PLal~~~ 391 (538)
.+...+-.++++.... ........+...-+..+|+|. |.-+.++
T Consensus 572 ap~~~~R~~IL~~~~s--~~~~~~~~~dLd~ls~~TEGy~~~DL~if 616 (952)
T KOG0735|consen 572 APAVTRRKEILTTIFS--KNLSDITMDDLDFLSVKTEGYLATDLVIF 616 (952)
T ss_pred CcchhHHHHHHHHHHH--hhhhhhhhHHHHHHHHhcCCccchhHHHH
Confidence 9998888888776652 222333344455577888775 4444443
No 155
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.62 E-value=0.0013 Score=66.94 Aligned_cols=125 Identities=21% Similarity=0.245 Sum_probs=74.6
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhhcCChHHHHHHHHHHHhcCCCCCCchhhcHHHHHHH-
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEETCRLGDLRQQLLSTLLNDGNVKNFLNTDLNFQSRR- 288 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~~- 288 (538)
....+.+.|++|+|||+||..++.. ..|+.+-.++ ....-++ +......++++.
T Consensus 537 ~lvSvLl~Gp~~sGKTaLAA~iA~~--S~FPFvKiiS----pe~miG~-------------------sEsaKc~~i~k~F 591 (744)
T KOG0741|consen 537 PLVSVLLEGPPGSGKTALAAKIALS--SDFPFVKIIS----PEDMIGL-------------------SESAKCAHIKKIF 591 (744)
T ss_pred cceEEEEecCCCCChHHHHHHHHhh--cCCCeEEEeC----hHHccCc-------------------cHHHHHHHHHHHH
Confidence 4567889999999999999998864 6677554443 1111111 111222222222
Q ss_pred ---hcCCCeEEEEecCCChH------------HHHHHhcCcCCCCC-CCE--EEEeccchhhhhhcC----CCeeEEcCC
Q 009306 289 ---LTRKKVLIVFDDVDHPR------------QIKILVGRLDLFAS-GSR--IIITTRDRQVLANCG----VDEVYQMEE 346 (538)
Q Consensus 289 ---l~~k~~LlVlDdv~~~~------------~~~~l~~~l~~~~~-~~~--iiiTtR~~~~~~~~~----~~~~~~l~~ 346 (538)
.+..--+||+||++..- .++.+.-.+....| |-+ |+-||....++..++ ....+.++.
T Consensus 592 ~DAYkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpn 671 (744)
T KOG0741|consen 592 EDAYKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPN 671 (744)
T ss_pred HHhhcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCc
Confidence 23344689999996432 23333333332233 223 556677777887775 345789999
Q ss_pred CCH-HHHHHHHHhh
Q 009306 347 LVH-DDALRLFSRH 359 (538)
Q Consensus 347 L~~-~ea~~Lf~~~ 359 (538)
++. ++..+.++..
T Consensus 672 l~~~~~~~~vl~~~ 685 (744)
T KOG0741|consen 672 LTTGEQLLEVLEEL 685 (744)
T ss_pred cCchHHHHHHHHHc
Confidence 988 7777777664
No 156
>PRK06921 hypothetical protein; Provisional
Probab=97.62 E-value=0.00016 Score=69.69 Aligned_cols=36 Identities=22% Similarity=0.251 Sum_probs=29.4
Q ss_pred ceEEEEeccCCCchhHHHHHHHHhhccc-eeeEEEEe
Q 009306 211 VYKLGIWGIGGIGKTTIAGAIFNKISRH-FSGSYFAR 246 (538)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~ 246 (538)
...+.++|++|+|||+|+.++++.+..+ ...++|+.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~ 153 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFP 153 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEE
Confidence 4568999999999999999999987765 44556665
No 157
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.59 E-value=0.00027 Score=74.19 Aligned_cols=156 Identities=19% Similarity=0.259 Sum_probs=88.7
Q ss_pred CCceeccchhHHHHHhhhc----CCCCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhhcCChHHHHHH
Q 009306 188 EDLVGVRLPMKEIESLLRT----GSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEETCRLGDLRQQ 263 (538)
Q Consensus 188 ~~~vGR~~~l~~l~~~L~~----~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ 263 (538)
++.+|+++..+.+.+++.- ++-+.++++++||+|+|||++|+.++..+...|.. +-+ +...+...+
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfR-fSv---GG~tDvAeI------ 480 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFR-FSV---GGMTDVAEI------ 480 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEE-Eec---cccccHHhh------
Confidence 4579999999999888753 44567899999999999999999999987766531 111 111111000
Q ss_pred HHHHHhcCCCCCCchhhcHHHHHHHh---cCCCeEEEEecCCCh----------HHHHHHhcCc---------CCCCCCC
Q 009306 264 LLSTLLNDGNVKNFLNTDLNFQSRRL---TRKKVLIVFDDVDHP----------RQIKILVGRL---------DLFASGS 321 (538)
Q Consensus 264 l~~~l~~~~~~~~~~~~~~~~l~~~l---~~k~~LlVlDdv~~~----------~~~~~l~~~l---------~~~~~~~ 321 (538)
.+.. ...+...-..+.+.| +...-|+.||+||.. ..++.+-+.. +---.-|
T Consensus 481 -----kGHR--RTYVGAMPGkiIq~LK~v~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLS 553 (906)
T KOG2004|consen 481 -----KGHR--RTYVGAMPGKIIQCLKKVKTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLS 553 (906)
T ss_pred -----cccc--eeeeccCChHHHHHHHhhCCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchh
Confidence 0100 011111212222222 334558889999742 1122221111 1001236
Q ss_pred EEEEeccchhh----hhhcCCCeeEEcCCCCHHHHHHHHHhhh
Q 009306 322 RIIITTRDRQV----LANCGVDEVYQMEELVHDDALRLFSRHA 360 (538)
Q Consensus 322 ~iiiTtR~~~~----~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 360 (538)
+|++....+.+ .+..+..++++|.+...+|-+.+-.++.
T Consensus 554 kVLFicTAN~idtIP~pLlDRMEvIelsGYv~eEKv~IA~~yL 596 (906)
T KOG2004|consen 554 KVLFICTANVIDTIPPPLLDRMEVIELSGYVAEEKVKIAERYL 596 (906)
T ss_pred heEEEEeccccccCChhhhhhhheeeccCccHHHHHHHHHHhh
Confidence 66554433211 1223445789999999999998887776
No 158
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.59 E-value=0.00018 Score=67.95 Aligned_cols=49 Identities=22% Similarity=0.240 Sum_probs=38.9
Q ss_pred HHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEe
Q 009306 198 KEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFAR 246 (538)
Q Consensus 198 ~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 246 (538)
..|.++|..+-....++.|+|++|+|||++|.+++.........++|+.
T Consensus 10 ~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~ 58 (225)
T PRK09361 10 KMLDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYID 58 (225)
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 3456666655566788999999999999999999987766666778876
No 159
>PRK10536 hypothetical protein; Provisional
Probab=97.58 E-value=0.00042 Score=65.29 Aligned_cols=54 Identities=13% Similarity=0.089 Sum_probs=39.6
Q ss_pred CCceeccchhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHh-h-ccceeeEEEE
Q 009306 188 EDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNK-I-SRHFSGSYFA 245 (538)
Q Consensus 188 ~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~-~-~~~f~~~~~~ 245 (538)
..+.+|......+..++.. ..++.++|++|.|||+||.+++.. + ...|...+..
T Consensus 55 ~~i~p~n~~Q~~~l~al~~----~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~ 110 (262)
T PRK10536 55 SPILARNEAQAHYLKAIES----KQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVT 110 (262)
T ss_pred ccccCCCHHHHHHHHHHhc----CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEe
Confidence 4567787777777777753 348999999999999999998884 3 3445544443
No 160
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.57 E-value=0.0041 Score=70.29 Aligned_cols=51 Identities=22% Similarity=0.337 Sum_probs=39.8
Q ss_pred CCCceeccchhHHHHHhhhcC------CC-CceEEEEeccCCCchhHHHHHHHHhhcc
Q 009306 187 NEDLVGVRLPMKEIESLLRTG------ST-NVYKLGIWGIGGIGKTTIAGAIFNKISR 237 (538)
Q Consensus 187 ~~~~vGR~~~l~~l~~~L~~~------~~-~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 237 (538)
...++|.+..++.+...+... .. ....+.++|++|+|||++|+.++.....
T Consensus 564 ~~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~ 621 (852)
T TIGR03346 564 HERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFD 621 (852)
T ss_pred hcccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 356899999999998877541 11 1356889999999999999999987643
No 161
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.56 E-value=7.6e-05 Score=67.40 Aligned_cols=35 Identities=34% Similarity=0.353 Sum_probs=27.0
Q ss_pred eEEEEeccCCCchhHHHHHHHHhhccceeeEEEEe
Q 009306 212 YKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFAR 246 (538)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 246 (538)
.-+.|+|++|+|||.||.+++++...+-..+.|+.
T Consensus 48 ~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~ 82 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFIT 82 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred eEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEee
Confidence 45999999999999999999987666545566665
No 162
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.55 E-value=0.00027 Score=65.21 Aligned_cols=108 Identities=16% Similarity=0.164 Sum_probs=61.0
Q ss_pred EEEEeccCCCchhHHHHHHHHhhccceeeEEEE-eehhhhhhcCChHHHHHHHHHHHhcCCCCCCchhhcHHHHHHHhcC
Q 009306 213 KLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFA-RNVREAEETCRLGDLRQQLLSTLLNDGNVKNFLNTDLNFQSRRLTR 291 (538)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~-~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~ 291 (538)
++.|+|++|+||||++..+...+.......++. .+..+.... .. ..+. ...............++..+..
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~-~~----~~~i----~q~~vg~~~~~~~~~i~~aLr~ 73 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHE-SK----RSLI----NQREVGLDTLSFENALKAALRQ 73 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCcccccc-Cc----ccee----eecccCCCccCHHHHHHHHhcC
Confidence 689999999999999999888765443333332 211110000 00 0000 0001111223345566777777
Q ss_pred CCeEEEEecCCChHHHHHHhcCcCCCCCCCEEEEeccchhh
Q 009306 292 KKVLIVFDDVDHPRQIKILVGRLDLFASGSRIIITTRDRQV 332 (538)
Q Consensus 292 k~~LlVlDdv~~~~~~~~l~~~l~~~~~~~~iiiTtR~~~~ 332 (538)
.+=+|++|++.+.+.+....... ..|..++.|+-....
T Consensus 74 ~pd~ii~gEird~e~~~~~l~~a---~~G~~v~~t~Ha~~~ 111 (198)
T cd01131 74 DPDVILVGEMRDLETIRLALTAA---ETGHLVMSTLHTNSA 111 (198)
T ss_pred CcCEEEEcCCCCHHHHHHHHHHH---HcCCEEEEEecCCcH
Confidence 88899999998777665544332 235556666655543
No 163
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.55 E-value=0.0044 Score=62.01 Aligned_cols=44 Identities=14% Similarity=0.382 Sum_probs=34.8
Q ss_pred chhHHHHHhhhcCC-CCceEEEEeccCCCchhHHHHHHHHhhccc
Q 009306 195 LPMKEIESLLRTGS-TNVYKLGIWGIGGIGKTTIAGAIFNKISRH 238 (538)
Q Consensus 195 ~~l~~l~~~L~~~~-~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 238 (538)
...+.|.+.+.... ....+|+|.|.=|+|||++.+.+.+.+...
T Consensus 3 ~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~ 47 (325)
T PF07693_consen 3 PYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELKED 47 (325)
T ss_pred HHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 34456666666533 567889999999999999999999988776
No 164
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.54 E-value=0.0012 Score=60.57 Aligned_cols=59 Identities=20% Similarity=0.294 Sum_probs=43.6
Q ss_pred CCCCCceeccchhHHHHHhhhc--CCCCceEEEEeccCCCchhHHHHHHHHhhccceeeEE
Q 009306 185 SENEDLVGVRLPMKEIESLLRT--GSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSY 243 (538)
Q Consensus 185 ~~~~~~vGR~~~l~~l~~~L~~--~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~ 243 (538)
..-..++|-+.+.+.|.+.-.. .+-...-|.+||..|.|||+|++++.+.+...+...+
T Consensus 57 i~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLV 117 (287)
T COG2607 57 IDLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLV 117 (287)
T ss_pred cCHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEE
Confidence 3446789999998888764322 1222344899999999999999999999887765533
No 165
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.53 E-value=0.0009 Score=69.91 Aligned_cols=152 Identities=16% Similarity=0.206 Sum_probs=85.9
Q ss_pred CCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhhcCChHHHHHHHHHHHhcCCCCCCchhhcHHHHHHH
Q 009306 209 TNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEETCRLGDLRQQLLSTLLNDGNVKNFLNTDLNFQSRR 288 (538)
Q Consensus 209 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~~ 288 (538)
...+-|.++||||+|||++|+++++.-...|-.+ . + .++++...+. +.........+.
T Consensus 466 ~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsv---k---------g-----pEL~sk~vGe-----SEr~ir~iF~kA 523 (693)
T KOG0730|consen 466 SPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSV---K---------G-----PELFSKYVGE-----SERAIREVFRKA 523 (693)
T ss_pred CCCceEEEECCCCcchHHHHHHHhhhhcCCeeec---c---------C-----HHHHHHhcCc-----hHHHHHHHHHHH
Confidence 4567799999999999999999999866554211 1 0 0111111111 111122222233
Q ss_pred hcCCCeEEEEecCCCh-------------HHHHHHhcCcCCCCCCCEEEEe--c-cchhhhhh-c---CCCeeEEcCCCC
Q 009306 289 LTRKKVLIVFDDVDHP-------------RQIKILVGRLDLFASGSRIIIT--T-RDRQVLAN-C---GVDEVYQMEELV 348 (538)
Q Consensus 289 l~~k~~LlVlDdv~~~-------------~~~~~l~~~l~~~~~~~~iiiT--t-R~~~~~~~-~---~~~~~~~l~~L~ 348 (538)
-+..+++|.||++|.. ..+..++..++.......|+|. | |...+-.. + +.++.+.++.-+
T Consensus 524 R~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD 603 (693)
T KOG0730|consen 524 RQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPD 603 (693)
T ss_pred hhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCcccceeEeecCcc
Confidence 3456799999998743 2245555555544444444433 2 33222111 1 356788888888
Q ss_pred HHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhcCCc
Q 009306 349 HDDALRLFSRHAFGGDHPHESHTELACKTIKYARGVP 385 (538)
Q Consensus 349 ~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 385 (538)
.+--.++|..++-+ -+.... -...++++.+.|.-
T Consensus 604 ~~aR~~Ilk~~~kk--mp~~~~-vdl~~La~~T~g~S 637 (693)
T KOG0730|consen 604 LEARLEILKQCAKK--MPFSED-VDLEELAQATEGYS 637 (693)
T ss_pred HHHHHHHHHHHHhc--CCCCcc-ccHHHHHHHhccCC
Confidence 88889999988822 222111 23456677676664
No 166
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.53 E-value=0.01 Score=59.21 Aligned_cols=88 Identities=15% Similarity=0.180 Sum_probs=60.1
Q ss_pred CCeEEEEecCCC--hHHHHHHhcCcCCCCCCCEEEEeccc-hhhhhhc-CCCeeEEcCCCCHHHHHHHHHhhhcCCCCCC
Q 009306 292 KKVLIVFDDVDH--PRQIKILVGRLDLFASGSRIIITTRD-RQVLANC-GVDEVYQMEELVHDDALRLFSRHAFGGDHPH 367 (538)
Q Consensus 292 k~~LlVlDdv~~--~~~~~~l~~~l~~~~~~~~iiiTtR~-~~~~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~ 367 (538)
+.-++|||+++. ......++..+..-.+++.+|++|.+ ..+++.+ .....+.+.+++.++..+.+.... ..
T Consensus 132 ~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~-----~~ 206 (342)
T PRK06964 132 GARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG-----VA 206 (342)
T ss_pred CceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC-----CC
Confidence 445889999974 46677888877766677776665554 4555443 234688999999999999997652 11
Q ss_pred CchHHHHHHHHHHhcCCcHHHH
Q 009306 368 ESHTELACKTIKYARGVPLALE 389 (538)
Q Consensus 368 ~~~~~~~~~i~~~~~G~PLal~ 389 (538)
+ ...++..++|.|+...
T Consensus 207 ~-----~~~~l~~~~Gsp~~Al 223 (342)
T PRK06964 207 D-----ADALLAEAGGAPLAAL 223 (342)
T ss_pred h-----HHHHHHHcCCCHHHHH
Confidence 1 2235778899996443
No 167
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=97.51 E-value=0.0023 Score=67.45 Aligned_cols=202 Identities=16% Similarity=0.163 Sum_probs=121.6
Q ss_pred CCCCceeccchhHHHHHhhhc--CC-CCceEEEEeccCCCchhHHHHHHHHhhcc-----ceeeE--EEEeehhhhhhcC
Q 009306 186 ENEDLVGVRLPMKEIESLLRT--GS-TNVYKLGIWGIGGIGKTTIAGAIFNKISR-----HFSGS--YFARNVREAEETC 255 (538)
Q Consensus 186 ~~~~~vGR~~~l~~l~~~L~~--~~-~~~~~v~I~G~~GiGKTtLa~~~~~~~~~-----~f~~~--~~~~~~~~~~~~~ 255 (538)
.+..+-+|+.+..+|...+.. .. +....+-|.|.+|.|||..+..+.+.+.. .-+.. +.+. .-.-.
T Consensus 394 vp~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveIN----gm~l~ 469 (767)
T KOG1514|consen 394 VPESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEIN----GLRLA 469 (767)
T ss_pred ccccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEc----ceeec
Confidence 567789999999999998865 22 33558899999999999999999986541 11222 2232 11234
Q ss_pred ChHHHHHHHHHHHhcCCCCCCchhhcHHHHHHHhc-----CCCeEEEEecCCChHH--HHHHhcCcCCC-CCCCEEEEec
Q 009306 256 RLGDLRQQLLSTLLNDGNVKNFLNTDLNFQSRRLT-----RKKVLIVFDDVDHPRQ--IKILVGRLDLF-ASGSRIIITT 327 (538)
Q Consensus 256 ~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~-----~k~~LlVlDdv~~~~~--~~~l~~~l~~~-~~~~~iiiTt 327 (538)
....+...|...+.+... ......+.+..+.. .++++|++|++|.+-. -+.+...+.|- .++++++|.+
T Consensus 470 ~~~~~Y~~I~~~lsg~~~---~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~ 546 (767)
T KOG1514|consen 470 SPREIYEKIWEALSGERV---TWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIA 546 (767)
T ss_pred CHHHHHHHHHHhcccCcc---cHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEE
Confidence 466677777776655432 23333444444443 4668999999976532 23333333333 3577766654
Q ss_pred cch------h-----hhhhcCCCeeEEcCCCCHHHHHHHHHhhhcCCCCC-CCchHHHHHHHHHHhcCCcHHHHHHHHHh
Q 009306 328 RDR------Q-----VLANCGVDEVYQMEELVHDDALRLFSRHAFGGDHP-HESHTELACKTIKYARGVPLALEVLGRYL 395 (538)
Q Consensus 328 R~~------~-----~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~-~~~~~~~~~~i~~~~~G~PLal~~~~~~L 395 (538)
-.. . +...+ .-..+.+.|.+..+..+++..+.-+-... ....+-.+++++...|..=.|+...-+..
T Consensus 547 IaNTmdlPEr~l~nrvsSRl-g~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~RA~ 625 (767)
T KOG1514|consen 547 IANTMDLPERLLMNRVSSRL-GLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICRRAA 625 (767)
T ss_pred ecccccCHHHHhccchhhhc-cceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 322 1 11111 23567889999999999998887333222 12233345566666666666666555544
No 168
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.50 E-value=0.0024 Score=70.93 Aligned_cols=50 Identities=18% Similarity=0.294 Sum_probs=38.8
Q ss_pred CCCceeccchhHHHHHhhhcC------CC-CceEEEEeccCCCchhHHHHHHHHhhc
Q 009306 187 NEDLVGVRLPMKEIESLLRTG------ST-NVYKLGIWGIGGIGKTTIAGAIFNKIS 236 (538)
Q Consensus 187 ~~~~vGR~~~l~~l~~~L~~~------~~-~~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (538)
...++|.+..++.+...+... .+ ....+.++|++|+|||+||+.++..+.
T Consensus 453 ~~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~ 509 (731)
T TIGR02639 453 KAKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALG 509 (731)
T ss_pred hcceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhc
Confidence 356899999999888776531 11 234678999999999999999998773
No 169
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.49 E-value=0.0025 Score=70.74 Aligned_cols=184 Identities=17% Similarity=0.210 Sum_probs=96.9
Q ss_pred hhhHHHHHHHHhhhccccccCC-----------CCCCCceeccchhHHHHHhhhc----CCCCceEEEEeccCCCchhHH
Q 009306 163 PESALIEEIVNAILKRLDDTFH-----------SENEDLVGVRLPMKEIESLLRT----GSTNVYKLGIWGIGGIGKTTI 227 (538)
Q Consensus 163 ~e~~~i~~i~~~~~~~~~~~~~-----------~~~~~~vGR~~~l~~l~~~L~~----~~~~~~~v~I~G~~GiGKTtL 227 (538)
+|+..+....+-+..-...... ....+.+|.+...+.|.++|.. +......++++|++|+||||+
T Consensus 286 ~e~~~~~~yl~~~~~~pw~~~~~~~~~~~~~~~~l~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl 365 (784)
T PRK10787 286 AEATVVRGYIDWMVQVPWNARSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSL 365 (784)
T ss_pred chHHHHHHHHHHHHhCCCCCCCcccccHHHHHHHhhhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHH
Confidence 4777777766655442111111 1234689999999999887763 223456799999999999999
Q ss_pred HHHHHHhhccceeeEEEEeehhhhhhcCChHHHHHHHHHHHhcCCCCCCchhhcHHHHHHHhcCCCeEEEEecCCChHH-
Q 009306 228 AGAIFNKISRHFSGSYFARNVREAEETCRLGDLRQQLLSTLLNDGNVKNFLNTDLNFQSRRLTRKKVLIVFDDVDHPRQ- 306 (538)
Q Consensus 228 a~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~- 306 (538)
++.++..+...|-..-+ ... .+...+...- ....+ .........+... ....-+++||+++....
T Consensus 366 ~~~ia~~l~~~~~~i~~-~~~------~d~~~i~g~~-~~~~g-----~~~G~~~~~l~~~-~~~~~villDEidk~~~~ 431 (784)
T PRK10787 366 GQSIAKATGRKYVRMAL-GGV------RDEAEIRGHR-RTYIG-----SMPGKLIQKMAKV-GVKNPLFLLDEIDKMSSD 431 (784)
T ss_pred HHHHHHHhCCCEEEEEc-CCC------CCHHHhccch-hccCC-----CCCcHHHHHHHhc-CCCCCEEEEEChhhcccc
Confidence 99999876554422111 111 1111110000 00000 0111112222221 22334789999964311
Q ss_pred -----HHHHhcCcCC---------------CCCCCEEEEeccchhhhhh-cCCCeeEEcCCCCHHHHHHHHHhhh
Q 009306 307 -----IKILVGRLDL---------------FASGSRIIITTRDRQVLAN-CGVDEVYQMEELVHDDALRLFSRHA 360 (538)
Q Consensus 307 -----~~~l~~~l~~---------------~~~~~~iiiTtR~~~~~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~ 360 (538)
...+...+.. .-.+..+|.|+....+.+. ++...++++.+++.+|-.++..++.
T Consensus 432 ~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 432 MRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred cCCCHHHHHHHHhccccEEEEecccccccccCCceEEEEcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 2333332221 0123444555543322111 1334678999999999999887776
No 170
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.49 E-value=0.00092 Score=74.70 Aligned_cols=52 Identities=29% Similarity=0.420 Sum_probs=39.9
Q ss_pred CCceeccchhHHHHHhhhc----CCCCceEEEEeccCCCchhHHHHHHHHhhccce
Q 009306 188 EDLVGVRLPMKEIESLLRT----GSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHF 239 (538)
Q Consensus 188 ~~~vGR~~~l~~l~~~L~~----~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f 239 (538)
..++|.+...+.+.+++.. +....+.+.++|++|+|||++|+.++..+...|
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~ 375 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNRKF 375 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCe
Confidence 4578888888888776532 222345799999999999999999999876544
No 171
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.49 E-value=0.0028 Score=71.35 Aligned_cols=51 Identities=18% Similarity=0.325 Sum_probs=38.9
Q ss_pred CCCceeccchhHHHHHhhhcC------CC-CceEEEEeccCCCchhHHHHHHHHhhcc
Q 009306 187 NEDLVGVRLPMKEIESLLRTG------ST-NVYKLGIWGIGGIGKTTIAGAIFNKISR 237 (538)
Q Consensus 187 ~~~~vGR~~~l~~l~~~L~~~------~~-~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 237 (538)
...++|.+..++.+...+... .+ ....+.++|++|+|||+||+.++..+..
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~ 624 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFD 624 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhc
Confidence 356899999999888876531 11 1246889999999999999999986543
No 172
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.48 E-value=0.00064 Score=65.06 Aligned_cols=37 Identities=30% Similarity=0.271 Sum_probs=29.0
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEe
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFAR 246 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 246 (538)
...-+.++|++|+|||.||.++.+++......+.|+.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~ 140 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFIT 140 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEE
Confidence 3445999999999999999999999884444555554
No 173
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.48 E-value=0.00019 Score=66.98 Aligned_cols=45 Identities=24% Similarity=0.236 Sum_probs=36.1
Q ss_pred HhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEe
Q 009306 202 SLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFAR 246 (538)
Q Consensus 202 ~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 246 (538)
++|..+-....++.|+|++|+|||+++.+++.........++|+.
T Consensus 3 ~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~ 47 (209)
T TIGR02237 3 ELLGGGVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYID 47 (209)
T ss_pred hhhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 345555566789999999999999999999987665556778877
No 174
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.46 E-value=0.00022 Score=72.57 Aligned_cols=46 Identities=22% Similarity=0.226 Sum_probs=37.2
Q ss_pred CCceeccchhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhcc
Q 009306 188 EDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISR 237 (538)
Q Consensus 188 ~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 237 (538)
.++++.+..++.+...|..+ +.+.++|++|+|||++|+.++..+..
T Consensus 175 ~d~~i~e~~le~l~~~L~~~----~~iil~GppGtGKT~lA~~la~~l~~ 220 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK----KNIILQGPPGVGKTFVARRLAYLLTG 220 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC----CCEEEECCCCCCHHHHHHHHHHHhcC
Confidence 45677788888888888643 34889999999999999999987643
No 175
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.46 E-value=0.0015 Score=57.99 Aligned_cols=138 Identities=17% Similarity=0.233 Sum_probs=71.8
Q ss_pred eccchhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhccc--------------------eeeEEEEeehhhh
Q 009306 192 GVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRH--------------------FSGSYFARNVREA 251 (538)
Q Consensus 192 GR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~--------------------f~~~~~~~~~~~~ 251 (538)
|-+..++.|...+..+ .-...+.++|+.|+||+++|..++..+-.. ++...++.... .
T Consensus 1 gq~~~~~~L~~~~~~~-~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~-~ 78 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSG-RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDK-K 78 (162)
T ss_dssp S-HHHHHHHHHHHHCT-C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTT-S
T ss_pred CcHHHHHHHHHHHHcC-CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEeccc-c
Confidence 4455566677766543 235568999999999999999999864321 22222222000 0
Q ss_pred hhcCChHHHHHHHHHHHhcCCCCCCchhhcHHHHHHHhcCCCeEEEEecCCC--hHHHHHHhcCcCCCCCCCEEEEeccc
Q 009306 252 EETCRLGDLRQQLLSTLLNDGNVKNFLNTDLNFQSRRLTRKKVLIVFDDVDH--PRQIKILVGRLDLFASGSRIIITTRD 329 (538)
Q Consensus 252 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~--~~~~~~l~~~l~~~~~~~~iiiTtR~ 329 (538)
...-.. +-.+.+...+... ...++.=++||||++. .+...+|+..+.....++.+|++|.+
T Consensus 79 ~~~i~i-~~ir~i~~~~~~~----------------~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~ 141 (162)
T PF13177_consen 79 KKSIKI-DQIREIIEFLSLS----------------PSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNN 141 (162)
T ss_dssp SSSBSH-HHHHHHHHHCTSS-----------------TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-
T ss_pred cchhhH-HHHHHHHHHHHHH----------------HhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECC
Confidence 000011 1111222211111 0123455899999975 45677777777666778888888876
Q ss_pred hh-hhhhc-CCCeeEEcCCCC
Q 009306 330 RQ-VLANC-GVDEVYQMEELV 348 (538)
Q Consensus 330 ~~-~~~~~-~~~~~~~l~~L~ 348 (538)
.. +++.. .....+.+.+++
T Consensus 142 ~~~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 142 PSKILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp GGGS-HHHHTTSEEEEE----
T ss_pred hHHChHHHHhhceEEecCCCC
Confidence 63 33333 233566776654
No 176
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.45 E-value=0.0014 Score=63.16 Aligned_cols=173 Identities=20% Similarity=0.196 Sum_probs=100.8
Q ss_pred CCCceeccchhHHHHHhhhcC--CCCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhh--hcCChHHHHH
Q 009306 187 NEDLVGVRLPMKEIESLLRTG--STNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAE--ETCRLGDLRQ 262 (538)
Q Consensus 187 ~~~~vGR~~~l~~l~~~L~~~--~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~--~~~~~~~l~~ 262 (538)
...++|-.++-+.+..++... -++...+.|.||.|.|||+|......+ .+.+...+.++.....- +...+..+.+
T Consensus 23 ~~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~-~q~~~E~~l~v~Lng~~~~dk~al~~I~r 101 (408)
T KOG2228|consen 23 HINLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSD-IQENGENFLLVRLNGELQTDKIALKGITR 101 (408)
T ss_pred CcceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhh-HHhcCCeEEEEEECccchhhHHHHHHHHH
Confidence 357899999999999888651 123456899999999999998877666 33444333433332221 2234555556
Q ss_pred HHHHHHhcCCCCCCchhhcHHHHHHHhc------CCCeEEEEecCCCh----HH--HHHHhc-CcCCCCCCCEEEEeccc
Q 009306 263 QLLSTLLNDGNVKNFLNTDLNFQSRRLT------RKKVLIVFDDVDHP----RQ--IKILVG-RLDLFASGSRIIITTRD 329 (538)
Q Consensus 263 ~l~~~l~~~~~~~~~~~~~~~~l~~~l~------~k~~LlVlDdv~~~----~~--~~~l~~-~l~~~~~~~~iiiTtR~ 329 (538)
++..++........+..+....+...|. ..++++|+|++|-- .| +-.++. .-....|-+-|-+|||-
T Consensus 102 ql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrl 181 (408)
T KOG2228|consen 102 QLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRL 181 (408)
T ss_pred HHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeeccc
Confidence 6555543332222344444444444442 24588999988632 11 122211 11112445567788886
Q ss_pred hh-------hhhhcCCCeeEEcCCCCHHHHHHHHHhhh
Q 009306 330 RQ-------VLANCGVDEVYQMEELVHDDALRLFSRHA 360 (538)
Q Consensus 330 ~~-------~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 360 (538)
.. |-.......++-++.++-++-.++++...
T Consensus 182 d~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 182 DILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred cHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 52 22223333466778899999999988876
No 177
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.43 E-value=0.00036 Score=65.54 Aligned_cols=50 Identities=22% Similarity=0.232 Sum_probs=38.7
Q ss_pred hHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEe
Q 009306 197 MKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFAR 246 (538)
Q Consensus 197 l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 246 (538)
+..|..+|..+-....++.|+|++|+||||+|.+++.........++|+.
T Consensus 5 i~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~ 54 (218)
T cd01394 5 CKGLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYID 54 (218)
T ss_pred hhHHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 34566677655566788999999999999999999988765555666765
No 178
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.41 E-value=0.00068 Score=66.70 Aligned_cols=36 Identities=28% Similarity=0.354 Sum_probs=29.3
Q ss_pred ceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEe
Q 009306 211 VYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFAR 246 (538)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 246 (538)
.+-+.|+|+.|+|||.||.++++.+......+.|+.
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~ 191 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLH 191 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 456999999999999999999999876544555654
No 179
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.40 E-value=0.00086 Score=66.56 Aligned_cols=35 Identities=20% Similarity=0.278 Sum_probs=29.2
Q ss_pred eEEEEeccCCCchhHHHHHHHHhhccceeeEEEEe
Q 009306 212 YKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFAR 246 (538)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 246 (538)
..+.|+|++|+|||+||.++++.+......++|+.
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t 218 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRT 218 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEE
Confidence 55999999999999999999998766655566665
No 180
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.39 E-value=0.0055 Score=57.53 Aligned_cols=207 Identities=12% Similarity=0.137 Sum_probs=115.5
Q ss_pred CCceeccchhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhcc------ceeeEEEEeehhh-----------
Q 009306 188 EDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISR------HFSGSYFARNVRE----------- 250 (538)
Q Consensus 188 ~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~------~f~~~~~~~~~~~----------- 250 (538)
+.+.+++..-..+..+.. .++.+-+.++|++|.||-|.+..+.+++-. +-+...|......
T Consensus 13 ~~l~~~~e~~~~Lksl~~--~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~y 90 (351)
T KOG2035|consen 13 DELIYHEELANLLKSLSS--TGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNY 90 (351)
T ss_pred hhcccHHHHHHHHHHhcc--cCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccc
Confidence 446667666666666554 234566899999999999999988875422 1223333321111
Q ss_pred ---h-hh--cCChHHHHHHHHHHHhcCCCCCCchhhcHHHHHHHhcCCCe-EEEEecCCCh--HHHHHHhcCcCCCCCCC
Q 009306 251 ---A-EE--TCRLGDLRQQLLSTLLNDGNVKNFLNTDLNFQSRRLTRKKV-LIVFDDVDHP--RQIKILVGRLDLFASGS 321 (538)
Q Consensus 251 ---~-~~--~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~-LlVlDdv~~~--~~~~~l~~~l~~~~~~~ 321 (538)
. +. ...-.-+.+.++.++++...++.. ..+++ ++||-.+|+. +.-.++...+......+
T Consensus 91 HlEitPSDaG~~DRvViQellKevAQt~qie~~------------~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~ 158 (351)
T KOG2035|consen 91 HLEITPSDAGNYDRVVIQELLKEVAQTQQIETQ------------GQRPFKVVVINEADELTRDAQHALRRTMEKYSSNC 158 (351)
T ss_pred eEEeChhhcCcccHHHHHHHHHHHHhhcchhhc------------cccceEEEEEechHhhhHHHHHHHHHHHHHHhcCc
Confidence 0 00 111123455555555544332211 12333 6677777654 22333333333335678
Q ss_pred EEEEeccch-hhhhhcC-CCeeEEcCCCCHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhcCCcHHHHHHHHHhcC--
Q 009306 322 RIIITTRDR-QVLANCG-VDEVYQMEELVHDDALRLFSRHAFGGDHPHESHTELACKTIKYARGVPLALEVLGRYLYG-- 397 (538)
Q Consensus 322 ~iiiTtR~~-~~~~~~~-~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~L~~-- 397 (538)
|+|+...+- .+..... ..-.++++..+++|....+++.+-+ ..-....+++.+|+++++|+-.---++...++-
T Consensus 159 RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~k--E~l~lp~~~l~rIa~kS~~nLRrAllmlE~~~~~n 236 (351)
T KOG2035|consen 159 RLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKK--EGLQLPKELLKRIAEKSNRNLRRALLMLEAVRVNN 236 (351)
T ss_pred eEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHH--hcccCcHHHHHHHHHHhcccHHHHHHHHHHHHhcc
Confidence 887764332 1222221 2246889999999999999988733 233344889999999999985333233332221
Q ss_pred C---------CHHHHHHHHHHh
Q 009306 398 K---------RREVWENAKSKW 410 (538)
Q Consensus 398 ~---------~~~~~~~~l~~l 410 (538)
. +..+|+-.+.+.
T Consensus 237 ~~~~a~~~~i~~~dWe~~i~e~ 258 (351)
T KOG2035|consen 237 EPFTANSQVIPKPDWEIYIQEI 258 (351)
T ss_pred ccccccCCCCCCccHHHHHHHH
Confidence 1 235677777654
No 181
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.38 E-value=0.0022 Score=67.71 Aligned_cols=77 Identities=19% Similarity=0.273 Sum_probs=47.5
Q ss_pred CCCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhhcCChHHHHHHHHHHHhcCCCCCCchhhcHHHHHH
Q 009306 208 STNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEETCRLGDLRQQLLSTLLNDGNVKNFLNTDLNFQSR 287 (538)
Q Consensus 208 ~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~ 287 (538)
.+..+++.++|++|+||||||..+++.-. | .++=+. +++......+-..+...+.......
T Consensus 323 RP~kKilLL~GppGlGKTTLAHViAkqaG--Y-sVvEIN----ASDeRt~~~v~~kI~~avq~~s~l~------------ 383 (877)
T KOG1969|consen 323 RPPKKILLLCGPPGLGKTTLAHVIAKQAG--Y-SVVEIN----ASDERTAPMVKEKIENAVQNHSVLD------------ 383 (877)
T ss_pred CCccceEEeecCCCCChhHHHHHHHHhcC--c-eEEEec----ccccccHHHHHHHHHHHHhhccccc------------
Confidence 34578999999999999999999887521 1 122222 3334444444455544443321100
Q ss_pred HhcCCCeEEEEecCCCh
Q 009306 288 RLTRKKVLIVFDDVDHP 304 (538)
Q Consensus 288 ~l~~k~~LlVlDdv~~~ 304 (538)
...+|..||+|++|..
T Consensus 384 -adsrP~CLViDEIDGa 399 (877)
T KOG1969|consen 384 -ADSRPVCLVIDEIDGA 399 (877)
T ss_pred -cCCCcceEEEecccCC
Confidence 1268899999999753
No 182
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.38 E-value=0.00065 Score=63.68 Aligned_cols=34 Identities=24% Similarity=0.456 Sum_probs=29.3
Q ss_pred EEEEeccCCCchhHHHHHHHHhhccceeeEEEEe
Q 009306 213 KLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFAR 246 (538)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 246 (538)
.++|.|.+|+|||||+..+.......|..++...
T Consensus 15 r~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t 48 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLIT 48 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEe
Confidence 4889999999999999999999989996665554
No 183
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.37 E-value=0.0011 Score=63.08 Aligned_cols=50 Identities=18% Similarity=0.152 Sum_probs=38.1
Q ss_pred hHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEe
Q 009306 197 MKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFAR 246 (538)
Q Consensus 197 l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 246 (538)
+..|.++|..+-+...++.|+|++|+|||+|+.+++.....+-..++|+.
T Consensus 11 i~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~ 60 (234)
T PRK06067 11 NEELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVIT 60 (234)
T ss_pred CHHHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEE
Confidence 34566667666667788999999999999999999776544555677766
No 184
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=97.37 E-value=0.0015 Score=65.33 Aligned_cols=142 Identities=17% Similarity=0.157 Sum_probs=80.4
Q ss_pred ceeccchhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhcccee---------------------eEEEEeeh
Q 009306 190 LVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFS---------------------GSYFARNV 248 (538)
Q Consensus 190 ~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~---------------------~~~~~~~~ 248 (538)
++|-+.....+..+..........+.++|++|+||||+|..+++.+-...+ ....+.
T Consensus 3 ~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~-- 80 (325)
T COG0470 3 LVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELN-- 80 (325)
T ss_pred cccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEec--
Confidence 566667777777777643333446999999999999999999997653321 111211
Q ss_pred hhhhhcCC---hHHHHHHHHHHHhcCCCCCCchhhcHHHHHHHhcCCCeEEEEecCCCh--HHHHHHhcCcCCCCCCCEE
Q 009306 249 REAEETCR---LGDLRQQLLSTLLNDGNVKNFLNTDLNFQSRRLTRKKVLIVFDDVDHP--RQIKILVGRLDLFASGSRI 323 (538)
Q Consensus 249 ~~~~~~~~---~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~i 323 (538)
.+.... ..+..+.+........ ..++.-+++||+++.. +...++...+........+
T Consensus 81 --~s~~~~~~i~~~~vr~~~~~~~~~~----------------~~~~~kviiidead~mt~~A~nallk~lEep~~~~~~ 142 (325)
T COG0470 81 --PSDLRKIDIIVEQVRELAEFLSESP----------------LEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRF 142 (325)
T ss_pred --ccccCCCcchHHHHHHHHHHhccCC----------------CCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEE
Confidence 111111 1222222222211110 0245569999999865 3456666666665677888
Q ss_pred EEeccch-hhhhhcC-CCeeEEcCCCCHHH
Q 009306 324 IITTRDR-QVLANCG-VDEVYQMEELVHDD 351 (538)
Q Consensus 324 iiTtR~~-~~~~~~~-~~~~~~l~~L~~~e 351 (538)
|++|.+. .+.+.+. ....+++.+.+..+
T Consensus 143 il~~n~~~~il~tI~SRc~~i~f~~~~~~~ 172 (325)
T COG0470 143 ILITNDPSKILPTIRSRCQRIRFKPPSRLE 172 (325)
T ss_pred EEEcCChhhccchhhhcceeeecCCchHHH
Confidence 8877643 3333322 23466777643333
No 185
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.37 E-value=0.0012 Score=71.39 Aligned_cols=118 Identities=17% Similarity=0.250 Sum_probs=69.8
Q ss_pred CCCceeccchhHHHHHhhhc-------CCCCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhhcCChHH
Q 009306 187 NEDLVGVRLPMKEIESLLRT-------GSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEETCRLGD 259 (538)
Q Consensus 187 ~~~~vGR~~~l~~l~~~L~~-------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 259 (538)
...++|.+..+..+.+.+.. .......+...||.|+|||.||++++..+-..=...+-++ .++.
T Consensus 490 ~~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~D-MSEy-------- 560 (786)
T COG0542 490 KKRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRID-MSEY-------- 560 (786)
T ss_pred hcceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeec-hHHH--------
Confidence 35789999999988877653 1223567788999999999999999987643222222222 1111
Q ss_pred HHHHHHHHHhcCCCCCCchhhcHHHHHHHhcCCCe-EEEEecCC--ChHHHHHHhcCc
Q 009306 260 LRQQLLSTLLNDGNVKNFLNTDLNFQSRRLTRKKV-LIVFDDVD--HPRQIKILVGRL 314 (538)
Q Consensus 260 l~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~-LlVlDdv~--~~~~~~~l~~~l 314 (538)
.-+.-.+.+.+.++.-...++ ...+-+..+++|| +|.||+++ +++-...|+..+
T Consensus 561 ~EkHsVSrLIGaPPGYVGyee-GG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVl 617 (786)
T COG0542 561 MEKHSVSRLIGAPPGYVGYEE-GGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVL 617 (786)
T ss_pred HHHHHHHHHhCCCCCCceecc-ccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHh
Confidence 112223344444333222222 3334455567777 88899996 455555555444
No 186
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.36 E-value=0.0031 Score=65.36 Aligned_cols=129 Identities=19% Similarity=0.238 Sum_probs=76.6
Q ss_pred ceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhhcCChHHHHHHHHHHHhcCCCCCCchhhcHHHHHHHhc
Q 009306 211 VYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEETCRLGDLRQQLLSTLLNDGNVKNFLNTDLNFQSRRLT 290 (538)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~ 290 (538)
..-|.+|||+|+|||-||++++++-...| +.. .+. +++....+. +.........+.-.
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEag~NF-----isV-------KGP-----ELlNkYVGE-----SErAVR~vFqRAR~ 602 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEAGANF-----ISV-------KGP-----ELLNKYVGE-----SERAVRQVFQRARA 602 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhccCce-----Eee-------cCH-----HHHHHHhhh-----HHHHHHHHHHHhhc
Confidence 34589999999999999999999876664 220 111 122222111 11122222223335
Q ss_pred CCCeEEEEecCCCh-------------HHHHHHhcCcCCCC--CCCEEEEeccchhhh-----hhcCCCeeEEcCCCCHH
Q 009306 291 RKKVLIVFDDVDHP-------------RQIKILVGRLDLFA--SGSRIIITTRDRQVL-----ANCGVDEVYQMEELVHD 350 (538)
Q Consensus 291 ~k~~LlVlDdv~~~-------------~~~~~l~~~l~~~~--~~~~iiiTtR~~~~~-----~~~~~~~~~~l~~L~~~ 350 (538)
..|++|.||++|.. ..+..|+..+.... .|.-||-.|..+++. ..-+.+..+-++.-+.+
T Consensus 603 saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~ 682 (802)
T KOG0733|consen 603 SAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAE 682 (802)
T ss_pred CCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHH
Confidence 68999999999743 23455555554332 344555555433332 22234567778888999
Q ss_pred HHHHHHHhhhc
Q 009306 351 DALRLFSRHAF 361 (538)
Q Consensus 351 ea~~Lf~~~~~ 361 (538)
|-.+++....-
T Consensus 683 eR~~ILK~~tk 693 (802)
T KOG0733|consen 683 ERVAILKTITK 693 (802)
T ss_pred HHHHHHHHHhc
Confidence 99999988874
No 187
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=97.35 E-value=0.0093 Score=59.29 Aligned_cols=85 Identities=13% Similarity=0.201 Sum_probs=50.9
Q ss_pred CeEEEEecCCC--hHHHHHHhcCcCCCCCCCEEEEeccchh-hhhhc-CCCeeEEcCCCCHHHHHHHHHhhhcCCCCCCC
Q 009306 293 KVLIVFDDVDH--PRQIKILVGRLDLFASGSRIIITTRDRQ-VLANC-GVDEVYQMEELVHDDALRLFSRHAFGGDHPHE 368 (538)
Q Consensus 293 ~~LlVlDdv~~--~~~~~~l~~~l~~~~~~~~iiiTtR~~~-~~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~ 368 (538)
+-++|+|+++. ......+...+.....+..+|++|.+.. +.+.+ .....+.+.+++.+++.+.+.... ..
T Consensus 114 ~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~~-----~~- 187 (325)
T PRK08699 114 LRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRERG-----VA- 187 (325)
T ss_pred ceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhcC-----CC-
Confidence 34556788864 3445555555544345676777777653 33332 234678899999999999886542 11
Q ss_pred chHHHHHHHHHHhcCCcHH
Q 009306 369 SHTELACKTIKYARGVPLA 387 (538)
Q Consensus 369 ~~~~~~~~i~~~~~G~PLa 387 (538)
... ..+..++|-|+.
T Consensus 188 ~~~----~~l~~~~g~p~~ 202 (325)
T PRK08699 188 EPE----ERLAFHSGAPLF 202 (325)
T ss_pred cHH----HHHHHhCCChhh
Confidence 111 123568898954
No 188
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.34 E-value=0.0013 Score=62.01 Aligned_cols=49 Identities=20% Similarity=0.169 Sum_probs=37.1
Q ss_pred HHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhccce------eeEEEEe
Q 009306 198 KEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHF------SGSYFAR 246 (538)
Q Consensus 198 ~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f------~~~~~~~ 246 (538)
..|..+|..+-....++.|+|++|+|||+||..++....... ..++|+.
T Consensus 6 ~~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~ 60 (226)
T cd01393 6 KALDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYID 60 (226)
T ss_pred HHHHHHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEe
Confidence 345566655556678899999999999999999988754444 5667776
No 189
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=97.32 E-value=0.0017 Score=69.25 Aligned_cols=46 Identities=24% Similarity=0.406 Sum_probs=37.3
Q ss_pred CCCceeccchhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHh
Q 009306 187 NEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNK 234 (538)
Q Consensus 187 ~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 234 (538)
.++++|.+..++.+...+... ....+.|+|++|+|||++|+.+++.
T Consensus 64 f~~iiGqs~~i~~l~~al~~~--~~~~vLi~Ge~GtGKt~lAr~i~~~ 109 (531)
T TIGR02902 64 FDEIIGQEEGIKALKAALCGP--NPQHVIIYGPPGVGKTAAARLVLEE 109 (531)
T ss_pred HHHeeCcHHHHHHHHHHHhCC--CCceEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999998776533 3345789999999999999999864
No 190
>PRK04296 thymidine kinase; Provisional
Probab=97.30 E-value=0.00053 Score=62.77 Aligned_cols=110 Identities=15% Similarity=0.049 Sum_probs=60.1
Q ss_pred eEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhhcCChHHHHHHHHHHHhcCCCC--CCchhhcHHHHHHHh
Q 009306 212 YKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEETCRLGDLRQQLLSTLLNDGNV--KNFLNTDLNFQSRRL 289 (538)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~--~~~~~~~~~~l~~~l 289 (538)
.++.|+|+.|.||||++..++.+...+...++++. .. ........ .+.+.++..... .....+....+.+ .
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k-~~-~d~~~~~~----~i~~~lg~~~~~~~~~~~~~~~~~~~~-~ 75 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFK-PA-IDDRYGEG----KVVSRIGLSREAIPVSSDTDIFELIEE-E 75 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEe-cc-ccccccCC----cEecCCCCcccceEeCChHHHHHHHHh-h
Confidence 46789999999999999999998766544444442 10 01111111 122222211000 0122333333333 2
Q ss_pred cCCCeEEEEecCCC--hHHHHHHhcCcCCCCCCCEEEEeccch
Q 009306 290 TRKKVLIVFDDVDH--PRQIKILVGRLDLFASGSRIIITTRDR 330 (538)
Q Consensus 290 ~~k~~LlVlDdv~~--~~~~~~l~~~l~~~~~~~~iiiTtR~~ 330 (538)
.++.-+||+|++.- .+++..+...+. ..|..||+|.++.
T Consensus 76 ~~~~dvviIDEaq~l~~~~v~~l~~~l~--~~g~~vi~tgl~~ 116 (190)
T PRK04296 76 GEKIDCVLIDEAQFLDKEQVVQLAEVLD--DLGIPVICYGLDT 116 (190)
T ss_pred CCCCCEEEEEccccCCHHHHHHHHHHHH--HcCCeEEEEecCc
Confidence 33556999999853 344444443322 4688899998874
No 191
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=97.29 E-value=0.0002 Score=61.93 Aligned_cols=46 Identities=24% Similarity=0.260 Sum_probs=32.5
Q ss_pred eeccchhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhc
Q 009306 191 VGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKIS 236 (538)
Q Consensus 191 vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (538)
||+...++++.+.+..-......|.|+|.+|+||+++|+.++..-.
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~ 46 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYSG 46 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTT
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcC
Confidence 5677777777776654223445589999999999999998887543
No 192
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.28 E-value=0.0011 Score=58.57 Aligned_cols=33 Identities=24% Similarity=0.293 Sum_probs=27.2
Q ss_pred EEEeccCCCchhHHHHHHHHhhccceeeEEEEe
Q 009306 214 LGIWGIGGIGKTTIAGAIFNKISRHFSGSYFAR 246 (538)
Q Consensus 214 v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 246 (538)
+.|+|++|+||||++..++.........++|+.
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~ 34 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVD 34 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEE
Confidence 689999999999999999988766555566665
No 193
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.28 E-value=0.0017 Score=64.43 Aligned_cols=98 Identities=20% Similarity=0.222 Sum_probs=59.7
Q ss_pred hhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhhcCChHHHHHHHHHHHhcC-CCC
Q 009306 196 PMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEETCRLGDLRQQLLSTLLND-GNV 274 (538)
Q Consensus 196 ~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~-~~~ 274 (538)
-+.++.+.|..+--...++.|-|.+|||||||..+++.++.... .+.|+.. ..++..+ +--...++.. .+.
T Consensus 78 g~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsG------EES~~Qi-klRA~RL~~~~~~l 149 (456)
T COG1066 78 GIEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSG------EESLQQI-KLRADRLGLPTNNL 149 (456)
T ss_pred ChHHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEeC------CcCHHHH-HHHHHHhCCCccce
Confidence 45567777765444567899999999999999999999998776 6677652 1122221 1122223211 111
Q ss_pred CCchhhcHHHHHHHh-cCCCeEEEEecC
Q 009306 275 KNFLNTDLNFQSRRL-TRKKVLIVFDDV 301 (538)
Q Consensus 275 ~~~~~~~~~~l~~~l-~~k~~LlVlDdv 301 (538)
....+...+.+.+.+ +.++-++|+|.+
T Consensus 150 ~l~aEt~~e~I~~~l~~~~p~lvVIDSI 177 (456)
T COG1066 150 YLLAETNLEDIIAELEQEKPDLVVIDSI 177 (456)
T ss_pred EEehhcCHHHHHHHHHhcCCCEEEEecc
Confidence 122223333444444 368899999998
No 194
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=97.25 E-value=0.0047 Score=66.28 Aligned_cols=52 Identities=21% Similarity=0.288 Sum_probs=41.5
Q ss_pred CCCCCceeccchhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhc
Q 009306 185 SENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKIS 236 (538)
Q Consensus 185 ~~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (538)
.....++|....++++.+.+..-......|.|+|++|+|||++|+.+++.-.
T Consensus 193 ~~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s~ 244 (534)
T TIGR01817 193 GKEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSP 244 (534)
T ss_pred CccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhCC
Confidence 3457899999999999887765333444589999999999999999987643
No 195
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=97.25 E-value=0.0034 Score=68.51 Aligned_cols=127 Identities=17% Similarity=0.171 Sum_probs=71.4
Q ss_pred eEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhhcCChHHHHHHHHHHHhcCCCCCCchhhcHHHHHHHhcC
Q 009306 212 YKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEETCRLGDLRQQLLSTLLNDGNVKNFLNTDLNFQSRRLTR 291 (538)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~ 291 (538)
+-+.|+|++|+|||++|+.++.+....| +.+. ... +... ..+ .........+......
T Consensus 186 ~gill~G~~G~GKt~~~~~~a~~~~~~f---~~is-~~~---------~~~~----~~g-----~~~~~~~~~f~~a~~~ 243 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKAIAGEAKVPF---FTIS-GSD---------FVEM----FVG-----VGASRVRDMFEQAKKA 243 (644)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHcCCCE---EEEe-hHH---------hHHh----hhc-----ccHHHHHHHHHHHHhc
Confidence 3489999999999999999998765443 1121 110 0000 000 0011111122222345
Q ss_pred CCeEEEEecCCChH----------------HHHHHhcCcCCCC--CCCEEEEeccchhhhhh-----cCCCeeEEcCCCC
Q 009306 292 KKVLIVFDDVDHPR----------------QIKILVGRLDLFA--SGSRIIITTRDRQVLAN-----CGVDEVYQMEELV 348 (538)
Q Consensus 292 k~~LlVlDdv~~~~----------------~~~~l~~~l~~~~--~~~~iiiTtR~~~~~~~-----~~~~~~~~l~~L~ 348 (538)
.|++|+||++|... .+..++..+..+. .+.-+|.||.....+.. -..++.+.++..+
T Consensus 244 ~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd 323 (644)
T PRK10733 244 APCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPD 323 (644)
T ss_pred CCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCC
Confidence 78999999996531 2333433333222 23445556665543221 1345678899999
Q ss_pred HHHHHHHHHhhh
Q 009306 349 HDDALRLFSRHA 360 (538)
Q Consensus 349 ~~ea~~Lf~~~~ 360 (538)
.++-.+++..+.
T Consensus 324 ~~~R~~Il~~~~ 335 (644)
T PRK10733 324 VRGREQILKVHM 335 (644)
T ss_pred HHHHHHHHHHHh
Confidence 988889888876
No 196
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.24 E-value=0.0016 Score=65.83 Aligned_cols=50 Identities=20% Similarity=0.285 Sum_probs=38.6
Q ss_pred hHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEe
Q 009306 197 MKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFAR 246 (538)
Q Consensus 197 l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 246 (538)
+.+|.+.|..+-....++.|.|.+|+|||||+.+++.........++|+.
T Consensus 68 i~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs 117 (372)
T cd01121 68 IEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVS 117 (372)
T ss_pred CHHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 45666677655556778999999999999999999988766545566665
No 197
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.23 E-value=0.0032 Score=59.83 Aligned_cols=50 Identities=12% Similarity=0.135 Sum_probs=38.8
Q ss_pred hHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEe
Q 009306 197 MKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFAR 246 (538)
Q Consensus 197 l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 246 (538)
+..|.++|..+-+...++.|.|++|+|||+||.++..........++|+.
T Consensus 7 i~~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs 56 (237)
T TIGR03877 7 IPGMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVA 56 (237)
T ss_pred cHhHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEE
Confidence 34566677666667789999999999999999998876545556677766
No 198
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.22 E-value=0.0046 Score=68.23 Aligned_cols=49 Identities=14% Similarity=0.218 Sum_probs=38.7
Q ss_pred CCceeccchhHHHHHhhhcC-------CCCceEEEEeccCCCchhHHHHHHHHhhc
Q 009306 188 EDLVGVRLPMKEIESLLRTG-------STNVYKLGIWGIGGIGKTTIAGAIFNKIS 236 (538)
Q Consensus 188 ~~~vGR~~~l~~l~~~L~~~-------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (538)
..++|.+..++.|...+... ......+.++|++|+|||+||+.++..+.
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~ 513 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG 513 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999988877531 11234688999999999999999998773
No 199
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=97.21 E-value=0.00089 Score=67.35 Aligned_cols=108 Identities=15% Similarity=0.149 Sum_probs=61.2
Q ss_pred ceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEe-ehhhhhhcCChHHHHHHHHHHHhcCCCCCCchhhcHHHHHHHh
Q 009306 211 VYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFAR-NVREAEETCRLGDLRQQLLSTLLNDGNVKNFLNTDLNFQSRRL 289 (538)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~-~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~~l 289 (538)
...+.|+|+.|+||||+.+.+...+.......++.. +..+.. .... ..+................++..+
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~--------~~~~-~~~i~q~evg~~~~~~~~~l~~~l 192 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYV--------HRNK-RSLINQREVGLDTLSFANALRAAL 192 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhh--------ccCc-cceEEccccCCCCcCHHHHHHHhh
Confidence 357999999999999999999887665444444432 111110 0000 000001111111223456677778
Q ss_pred cCCCeEEEEecCCChHHHHHHhcCcCCCCCCCEEEEeccch
Q 009306 290 TRKKVLIVFDDVDHPRQIKILVGRLDLFASGSRIIITTRDR 330 (538)
Q Consensus 290 ~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~~~~iiiTtR~~ 330 (538)
+..+=.|++|++.+.+.....+... ..|..++.|.-..
T Consensus 193 r~~pd~i~vgEird~~~~~~~l~aa---~tGh~v~~T~Ha~ 230 (343)
T TIGR01420 193 REDPDVILIGEMRDLETVELALTAA---ETGHLVFGTLHTN 230 (343)
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHHH---HcCCcEEEEEcCC
Confidence 8899999999998877665533321 2354455554443
No 200
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.20 E-value=0.0022 Score=71.95 Aligned_cols=50 Identities=24% Similarity=0.295 Sum_probs=38.7
Q ss_pred CCceeccchhHHHHHhhhc-------CCCCceEEEEeccCCCchhHHHHHHHHhhcc
Q 009306 188 EDLVGVRLPMKEIESLLRT-------GSTNVYKLGIWGIGGIGKTTIAGAIFNKISR 237 (538)
Q Consensus 188 ~~~vGR~~~l~~l~~~L~~-------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 237 (538)
..++|.+..++.+.+.+.. ......++.++|++|+|||.||+.++..+-.
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~ 622 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYG 622 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhC
Confidence 5689999999888877642 1122346889999999999999999987643
No 201
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.20 E-value=0.011 Score=64.17 Aligned_cols=154 Identities=15% Similarity=0.171 Sum_probs=88.6
Q ss_pred CCCCceeccchhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhccc-ee-----eEEEEeehhhhhhcCChHH
Q 009306 186 ENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRH-FS-----GSYFARNVREAEETCRLGD 259 (538)
Q Consensus 186 ~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~-----~~~~~~~~~~~~~~~~~~~ 259 (538)
.-+.++||+.|++.+.+.|.....+.+ .++|.+|+|||+++.-++.++... .+ ..++-.+...
T Consensus 168 klDPvIGRd~EI~r~iqIL~RR~KNNP--vLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~--------- 236 (786)
T COG0542 168 KLDPVIGRDEEIRRTIQILSRRTKNNP--VLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGS--------- 236 (786)
T ss_pred CCCCCcChHHHHHHHHHHHhccCCCCC--eEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHH---------
Confidence 346789999999999999986544443 467999999999999999986543 11 1222211111
Q ss_pred HHHHHHHHHhcCCCCCCchhhcHHHHHHHh-cCCCeEEEEecCCCh-----------HHHHHHhcCcCCCCCCCEEEEec
Q 009306 260 LRQQLLSTLLNDGNVKNFLNTDLNFQSRRL-TRKKVLIVFDDVDHP-----------RQIKILVGRLDLFASGSRIIITT 327 (538)
Q Consensus 260 l~~~l~~~l~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~-----------~~~~~l~~~l~~~~~~~~iiiTt 327 (538)
-..+. .-....++....+.+.+ +..+++|.+|.++.. +....+.+.+.+ +.--.|-.||
T Consensus 237 -------LvAGa-kyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLAR-GeL~~IGATT 307 (786)
T COG0542 237 -------LVAGA-KYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALAR-GELRCIGATT 307 (786)
T ss_pred -------Hhccc-cccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhc-CCeEEEEecc
Confidence 11111 11133333333333333 345899999998532 122333344431 2222345566
Q ss_pred cchhh------hhhcCCCeeEEcCCCCHHHHHHHHHhh
Q 009306 328 RDRQV------LANCGVDEVYQMEELVHDDALRLFSRH 359 (538)
Q Consensus 328 R~~~~------~~~~~~~~~~~l~~L~~~ea~~Lf~~~ 359 (538)
-++.- ...-...+.+.+...+.+++..++...
T Consensus 308 ~~EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGl 345 (786)
T COG0542 308 LDEYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGL 345 (786)
T ss_pred HHHHHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHH
Confidence 44411 011123467889999999999988764
No 202
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.20 E-value=0.0013 Score=62.60 Aligned_cols=48 Identities=19% Similarity=0.212 Sum_probs=35.2
Q ss_pred HHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhccc------eeeEEEEe
Q 009306 199 EIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRH------FSGSYFAR 246 (538)
Q Consensus 199 ~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~------f~~~~~~~ 246 (538)
.|..+|..+-....++.|+|++|+|||+||..++...... ...++|+.
T Consensus 7 ~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~ 60 (235)
T cd01123 7 ALDELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYID 60 (235)
T ss_pred hhHhhccCCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEe
Confidence 4555666555667889999999999999999998653322 25677776
No 203
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.19 E-value=0.0015 Score=58.96 Aligned_cols=37 Identities=35% Similarity=0.591 Sum_probs=31.0
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEe
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFAR 246 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 246 (538)
...++.|+|++|+||||+|+.++..+...+...+++.
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~ 42 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLD 42 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 3458999999999999999999999877766666664
No 204
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.19 E-value=0.0022 Score=67.60 Aligned_cols=54 Identities=24% Similarity=0.280 Sum_probs=40.8
Q ss_pred CCCCCCCceeccchhHHHHHhhhc---CCCCceEEEEeccCCCchhHHHHHHHHhhc
Q 009306 183 FHSENEDLVGVRLPMKEIESLLRT---GSTNVYKLGIWGIGGIGKTTIAGAIFNKIS 236 (538)
Q Consensus 183 ~~~~~~~~vGR~~~l~~l~~~L~~---~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (538)
.|....+++--...++++..||.. +....+++.|+||+|+||||.++.+++++.
T Consensus 14 ~P~~~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg 70 (519)
T PF03215_consen 14 APKTLDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELG 70 (519)
T ss_pred CCCCHHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhC
Confidence 334445555556788888888875 233467899999999999999999999864
No 205
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.14 E-value=0.00035 Score=58.76 Aligned_cols=23 Identities=30% Similarity=0.426 Sum_probs=21.3
Q ss_pred EEEEeccCCCchhHHHHHHHHhh
Q 009306 213 KLGIWGIGGIGKTTIAGAIFNKI 235 (538)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~~ 235 (538)
+|+|.|++|+||||+|+.+++++
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999876
No 206
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.14 E-value=0.0054 Score=66.12 Aligned_cols=178 Identities=16% Similarity=0.187 Sum_probs=104.1
Q ss_pred CCCCceeccchhHHHHHh---hhc-------CCCCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhhcC
Q 009306 186 ENEDLVGVRLPMKEIESL---LRT-------GSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEETC 255 (538)
Q Consensus 186 ~~~~~vGR~~~l~~l~~~---L~~-------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~ 255 (538)
.-.++.|-+...++|++. |.. +..-++-+.|+||+|.|||-||++++-+-. +-|+....
T Consensus 309 ~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAg-----VPF~svSG------ 377 (774)
T KOG0731|consen 309 KFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAG-----VPFFSVSG------ 377 (774)
T ss_pred ccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccC-----Cceeeech------
Confidence 346788888766666654 432 222356699999999999999999997633 22333111
Q ss_pred ChHHHHHHHHHHHhcCCCCCCchhhcHHHHHHHhcCCCeEEEEecCCCh-----------------HHHHHHhcCcCCCC
Q 009306 256 RLGDLRQQLLSTLLNDGNVKNFLNTDLNFQSRRLTRKKVLIVFDDVDHP-----------------RQIKILVGRLDLFA 318 (538)
Q Consensus 256 ~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-----------------~~~~~l~~~l~~~~ 318 (538)
.++.+.+ .+. ............-.+.|++|.+|++|.. ..+..++..++.+.
T Consensus 378 --SEFvE~~----~g~-----~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~ 446 (774)
T KOG0731|consen 378 --SEFVEMF----VGV-----GASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFE 446 (774)
T ss_pred --HHHHHHh----ccc-----chHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCc
Confidence 1111111 000 0011111112222467899999988632 23666666666555
Q ss_pred CCCEE--EEeccchhhhhh-----cCCCeeEEcCCCCHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhcCCcHH
Q 009306 319 SGSRI--IITTRDRQVLAN-----CGVDEVYQMEELVHDDALRLFSRHAFGGDHPHESHTELACKTIKYARGVPLA 387 (538)
Q Consensus 319 ~~~~i--iiTtR~~~~~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLa 387 (538)
....| +-+|...+++.. -+.++.+.++.-+...-.++|..++...... ....+++. ++..+-|++=|
T Consensus 447 ~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~-~e~~dl~~-~a~~t~gf~ga 520 (774)
T KOG0731|consen 447 TSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD-DEDVDLSK-LASLTPGFSGA 520 (774)
T ss_pred CCCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCC-cchhhHHH-HHhcCCCCcHH
Confidence 44433 334444444322 2356778899999999999999998433322 34455555 88889888744
No 207
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=97.13 E-value=0.0011 Score=58.20 Aligned_cols=117 Identities=14% Similarity=0.126 Sum_probs=60.8
Q ss_pred EEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhhcCChHHHHHHHHH----HHhcC-----CCCC---Cchhh
Q 009306 213 KLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEETCRLGDLRQQLLS----TLLND-----GNVK---NFLNT 280 (538)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~----~l~~~-----~~~~---~~~~~ 280 (538)
.|-|++..|.||||+|...+-+...+-..+.++...... ...+-...++.+-. ..+.. .+.. .....
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~-~~~gE~~~l~~l~~v~~~~~g~~~~~~~~~~~~~~~~a~~ 82 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGG-WKYGELKALERLPNIEIHRMGRGFFWTTENDEEDIAAAAE 82 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCC-CccCHHHHHHhCCCcEEEECCCCCccCCCChHHHHHHHHH
Confidence 577888889999999999998876665555554422221 11222233333200 00000 0000 11112
Q ss_pred cHHHHHHHhcC-CCeEEEEecCCCh-----HHHHHHhcCcCCCCCCCEEEEeccch
Q 009306 281 DLNFQSRRLTR-KKVLIVFDDVDHP-----RQIKILVGRLDLFASGSRIIITTRDR 330 (538)
Q Consensus 281 ~~~~l~~~l~~-k~~LlVlDdv~~~-----~~~~~l~~~l~~~~~~~~iiiTtR~~ 330 (538)
.....++.+.. .-=|||||++-.. -..+.+...+....++..+|+|.|+.
T Consensus 83 ~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~ 138 (159)
T cd00561 83 GWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNA 138 (159)
T ss_pred HHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCC
Confidence 23333444443 4459999998322 12233333333335688999999986
No 208
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.12 E-value=0.0037 Score=70.40 Aligned_cols=50 Identities=18% Similarity=0.332 Sum_probs=38.4
Q ss_pred CCCceeccchhHHHHHhhhc---C---CC-CceEEEEeccCCCchhHHHHHHHHhhc
Q 009306 187 NEDLVGVRLPMKEIESLLRT---G---ST-NVYKLGIWGIGGIGKTTIAGAIFNKIS 236 (538)
Q Consensus 187 ~~~~vGR~~~l~~l~~~L~~---~---~~-~~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (538)
...++|.+..++.+...+.. + .+ ....+.++|++|+|||+||+.+++.+-
T Consensus 508 ~~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~ 564 (821)
T CHL00095 508 HKRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFF 564 (821)
T ss_pred cCcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhc
Confidence 36789999999998877642 1 11 134577899999999999999998764
No 209
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.12 E-value=0.0018 Score=64.47 Aligned_cols=101 Identities=15% Similarity=0.140 Sum_probs=57.6
Q ss_pred HHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhcccee-eEEEEeehhhhhhcCChHHHHHHHHHHHhcCCCCCCc-
Q 009306 200 IESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFS-GSYFARNVREAEETCRLGDLRQQLLSTLLNDGNVKNF- 277 (538)
Q Consensus 200 l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~-~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~- 277 (538)
+.+.+..-+ ..+.++|+|++|+|||||++.+++.+....+ ..+++..+ ........++.+.+...+.........
T Consensus 123 vID~l~PiG-kGQR~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~lI--gER~~EV~df~~~i~~~Vvast~de~~~ 199 (380)
T PRK12608 123 VVDLVAPIG-KGQRGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLI--DERPEEVTDMRRSVKGEVYASTFDRPPD 199 (380)
T ss_pred hhhheeecC-CCceEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEEe--cCCCCCHHHHHHHHhhhEEeecCCCCHH
Confidence 445554322 3345799999999999999999998766543 22232222 223456677777776655432211111
Q ss_pred ----hhhcHHHHHHHh--cCCCeEEEEecCCC
Q 009306 278 ----LNTDLNFQSRRL--TRKKVLIVFDDVDH 303 (538)
Q Consensus 278 ----~~~~~~~l~~~l--~~k~~LlVlDdv~~ 303 (538)
.........+.+ .+++++||+|++..
T Consensus 200 ~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr 231 (380)
T PRK12608 200 EHIRVAELVLERAKRLVEQGKDVVILLDSLTR 231 (380)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHH
Confidence 111111122222 47899999999854
No 210
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=97.10 E-value=0.0064 Score=64.62 Aligned_cols=151 Identities=19% Similarity=0.187 Sum_probs=83.1
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhhcCChHHHHHHHHHHHhcCCCCCCchhhcHHHHHHHh
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEETCRLGDLRQQLLSTLLNDGNVKNFLNTDLNFQSRRL 289 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~~l 289 (538)
..+.+.++|++|.|||.||++++......|-.+..- + +++...+ ..............
T Consensus 275 ~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~-------------~----l~sk~vG-----esek~ir~~F~~A~ 332 (494)
T COG0464 275 PPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGS-------------E----LLSKWVG-----ESEKNIRELFEKAR 332 (494)
T ss_pred CCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCH-------------H----Hhccccc-----hHHHHHHHHHHHHH
Confidence 455799999999999999999999765554322110 1 1111000 11111122222333
Q ss_pred cCCCeEEEEecCCCh-------------HHHHHHhcCcCCCCC--CCEEEEeccchhhhhhc-----CCCeeEEcCCCCH
Q 009306 290 TRKKVLIVFDDVDHP-------------RQIKILVGRLDLFAS--GSRIIITTRDRQVLANC-----GVDEVYQMEELVH 349 (538)
Q Consensus 290 ~~k~~LlVlDdv~~~-------------~~~~~l~~~l~~~~~--~~~iiiTtR~~~~~~~~-----~~~~~~~l~~L~~ 349 (538)
+..+++|.+|+++.. ..+..++..+..... +..||-+|-....+... ..+..+.++.-+.
T Consensus 333 ~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~ 412 (494)
T COG0464 333 KLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDL 412 (494)
T ss_pred cCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCH
Confidence 578999999999632 223344433332222 33445555444333211 3456888999999
Q ss_pred HHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhcC
Q 009306 350 DDALRLFSRHAFGGDHPHESHTELACKTIKYARG 383 (538)
Q Consensus 350 ~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G 383 (538)
++..+.|..+.-..... -...-....+++.+.|
T Consensus 413 ~~r~~i~~~~~~~~~~~-~~~~~~~~~l~~~t~~ 445 (494)
T COG0464 413 EERLEIFKIHLRDKKPP-LAEDVDLEELAEITEG 445 (494)
T ss_pred HHHHHHHHHHhcccCCc-chhhhhHHHHHHHhcC
Confidence 99999999988322221 1112234455555555
No 211
>PRK14974 cell division protein FtsY; Provisional
Probab=97.10 E-value=0.0035 Score=62.27 Aligned_cols=29 Identities=21% Similarity=0.318 Sum_probs=25.0
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhhccc
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKISRH 238 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 238 (538)
+..+++++|++|+||||++..++..+...
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~ 167 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKN 167 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 36789999999999999999998877654
No 212
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=97.09 E-value=0.025 Score=55.92 Aligned_cols=48 Identities=19% Similarity=0.116 Sum_probs=35.1
Q ss_pred eEEcCCCCHHHHHHHHHhhhcCCCCCC-CchHHHHHHHHHHhcCCcHHH
Q 009306 341 VYQMEELVHDDALRLFSRHAFGGDHPH-ESHTELACKTIKYARGVPLAL 388 (538)
Q Consensus 341 ~~~l~~L~~~ea~~Lf~~~~~~~~~~~-~~~~~~~~~i~~~~~G~PLal 388 (538)
.+++++++.+|+..++....-.+-... ...+...+++.-..+|||.-+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 789999999999999988774333322 344556667777779999654
No 213
>PHA00729 NTP-binding motif containing protein
Probab=97.08 E-value=0.0018 Score=60.04 Aligned_cols=27 Identities=30% Similarity=0.304 Sum_probs=23.1
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhhc
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKIS 236 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (538)
+...+.|+|.+|+||||||..+++++.
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 334689999999999999999998753
No 214
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=97.08 E-value=0.0072 Score=60.35 Aligned_cols=47 Identities=21% Similarity=0.187 Sum_probs=38.0
Q ss_pred CCceeccchhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHh
Q 009306 188 EDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNK 234 (538)
Q Consensus 188 ~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 234 (538)
..++|+...++.+.+.+..-......|.|+|.+|+||+++|+.+...
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~ 52 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYL 52 (326)
T ss_pred CccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHh
Confidence 56899999999988877653333445999999999999999988864
No 215
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.07 E-value=0.0014 Score=64.59 Aligned_cols=50 Identities=20% Similarity=0.164 Sum_probs=38.6
Q ss_pred hHHHHHhhh-cCCCCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEe
Q 009306 197 MKEIESLLR-TGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFAR 246 (538)
Q Consensus 197 l~~l~~~L~-~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 246 (538)
...|..+|. .+-+..+++-|+|++|+||||||..++.........++|+.
T Consensus 40 i~~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId 90 (325)
T cd00983 40 SLSLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFID 90 (325)
T ss_pred CHHHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEC
Confidence 345566665 55566788999999999999999999887655556677776
No 216
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.07 E-value=0.00077 Score=66.82 Aligned_cols=49 Identities=14% Similarity=0.281 Sum_probs=41.4
Q ss_pred CceeccchhHHHHHhhhcC----CCCceEEEEeccCCCchhHHHHHHHHhhcc
Q 009306 189 DLVGVRLPMKEIESLLRTG----STNVYKLGIWGIGGIGKTTIAGAIFNKISR 237 (538)
Q Consensus 189 ~~vGR~~~l~~l~~~L~~~----~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 237 (538)
.++|.+..+.++.+++... ....++++|+|++|+||||||..++..+..
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 7999999999999888651 234688999999999999999999987644
No 217
>PRK09354 recA recombinase A; Provisional
Probab=97.06 E-value=0.0014 Score=64.96 Aligned_cols=99 Identities=19% Similarity=0.148 Sum_probs=58.8
Q ss_pred hHHHHHhhh-cCCCCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhhcCChHHHHHHHH---HHHhcCC
Q 009306 197 MKEIESLLR-TGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEETCRLGDLRQQLL---STLLNDG 272 (538)
Q Consensus 197 l~~l~~~L~-~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~---~~l~~~~ 272 (538)
...|..+|. .+-+..+++-|+|++|+||||||..++......-..++|+..-.... . ...+.+. ..+....
T Consensus 45 i~~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~----~-~~a~~lGvdld~lli~q 119 (349)
T PRK09354 45 SLALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALD----P-VYAKKLGVDIDNLLVSQ 119 (349)
T ss_pred cHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchH----H-HHHHHcCCCHHHeEEec
Confidence 345666776 55567789999999999999999999887666666777876322111 1 1222221 1111111
Q ss_pred CCCCchhhcHHHHHHHhc-CCCeEEEEecCC
Q 009306 273 NVKNFLNTDLNFQSRRLT-RKKVLIVFDDVD 302 (538)
Q Consensus 273 ~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~ 302 (538)
....++....+...+. +..-+||+|.+.
T Consensus 120 --p~~~Eq~l~i~~~li~s~~~~lIVIDSva 148 (349)
T PRK09354 120 --PDTGEQALEIADTLVRSGAVDLIVVDSVA 148 (349)
T ss_pred --CCCHHHHHHHHHHHhhcCCCCEEEEeChh
Confidence 1234444444444443 456789999874
No 218
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.06 E-value=0.0065 Score=60.89 Aligned_cols=37 Identities=22% Similarity=0.253 Sum_probs=28.4
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEe
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFAR 246 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 246 (538)
..++++|+|++|+||||++..++..+..+-..+.++.
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~ 276 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFIT 276 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEe
Confidence 3578999999999999999999987765433344443
No 219
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.05 E-value=0.016 Score=55.10 Aligned_cols=172 Identities=17% Similarity=0.199 Sum_probs=92.6
Q ss_pred CCceeccchhHHHHHhhh----------cCCCCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhhcCCh
Q 009306 188 EDLVGVRLPMKEIESLLR----------TGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEETCRL 257 (538)
Q Consensus 188 ~~~vGR~~~l~~l~~~L~----------~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 257 (538)
.++-|.+...+.|.+... .....-+-|.++|++|.|||-||++++-+-...| |-.. .
T Consensus 133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTF----FSvS---------S 199 (439)
T KOG0739|consen 133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANSTF----FSVS---------S 199 (439)
T ss_pred hhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCce----EEee---------h
Confidence 567788888887776421 1222356799999999999999999998754332 2211 1
Q ss_pred HHHHHHHHHHHhcCCCCCCchhhcHHHHHHHh-cCCCeEEEEecCCCh---------HHH----HHHhcCcC---CCCCC
Q 009306 258 GDLRQQLLSTLLNDGNVKNFLNTDLNFQSRRL-TRKKVLIVFDDVDHP---------RQI----KILVGRLD---LFASG 320 (538)
Q Consensus 258 ~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~---------~~~----~~l~~~l~---~~~~~ 320 (538)
.++... .++ .-+.+...+.+.. .++|-+|.+|++|.. +.. ..|+-.+. ....|
T Consensus 200 SDLvSK---WmG-------ESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~g 269 (439)
T KOG0739|consen 200 SDLVSK---WMG-------ESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDG 269 (439)
T ss_pred HHHHHH---Hhc-------cHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCc
Confidence 111111 111 1122233333332 468999999999743 111 12222222 11234
Q ss_pred CEEEEeccchhhhhhc---CCCeeEEcCCCCHHHHH-HHHHhhhcCCCCCCCchHHHHHHHHHHhcCCc
Q 009306 321 SRIIITTRDRQVLANC---GVDEVYQMEELVHDDAL-RLFSRHAFGGDHPHESHTELACKTIKYARGVP 385 (538)
Q Consensus 321 ~~iiiTtR~~~~~~~~---~~~~~~~l~~L~~~ea~-~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 385 (538)
.-|+-.|.-+.++... +....+-+ ||.+..|. .+|.-+. ++.+....+...+++.+++.|..
T Consensus 270 vLVLgATNiPw~LDsAIRRRFekRIYI-PLPe~~AR~~MF~lhl--G~tp~~LT~~d~~eL~~kTeGyS 335 (439)
T KOG0739|consen 270 VLVLGATNIPWVLDSAIRRRFEKRIYI-PLPEAHARARMFKLHL--GDTPHVLTEQDFKELARKTEGYS 335 (439)
T ss_pred eEEEecCCCchhHHHHHHHHhhcceec-cCCcHHHhhhhheecc--CCCccccchhhHHHHHhhcCCCC
Confidence 4455455544444322 12223333 34444444 4555555 55566666777888888888864
No 220
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.04 E-value=0.005 Score=63.44 Aligned_cols=29 Identities=24% Similarity=0.345 Sum_probs=25.4
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhhccc
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKISRH 238 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 238 (538)
...++.++|++|+||||++..++..+...
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~ 122 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKK 122 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHc
Confidence 46789999999999999999999887655
No 221
>PRK08118 topology modulation protein; Reviewed
Probab=97.04 E-value=0.0005 Score=61.49 Aligned_cols=24 Identities=38% Similarity=0.583 Sum_probs=21.8
Q ss_pred EEEEeccCCCchhHHHHHHHHhhc
Q 009306 213 KLGIWGIGGIGKTTIAGAIFNKIS 236 (538)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~~~ 236 (538)
.|.|+|++|+||||||+.+++.+.
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~ 26 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLN 26 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999999764
No 222
>PRK04328 hypothetical protein; Provisional
Probab=97.04 E-value=0.0048 Score=59.08 Aligned_cols=49 Identities=12% Similarity=0.102 Sum_probs=37.3
Q ss_pred HHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEe
Q 009306 198 KEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFAR 246 (538)
Q Consensus 198 ~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 246 (538)
..|.++|..+-+...++.|.|++|.|||+|+.+++.+.......++|+.
T Consensus 10 ~~LD~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis 58 (249)
T PRK04328 10 PGMDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVA 58 (249)
T ss_pred hhHHHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence 3566667655566778999999999999999998877545555666765
No 223
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=97.03 E-value=0.017 Score=56.82 Aligned_cols=52 Identities=15% Similarity=0.115 Sum_probs=37.5
Q ss_pred CCCCCceeccchhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhcccee
Q 009306 185 SENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFS 240 (538)
Q Consensus 185 ~~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~ 240 (538)
...+.++=.......+...+..+ +.|.|.|++|+||||+|+.++..+...+-
T Consensus 42 ~~d~~y~f~~~~~~~vl~~l~~~----~~ilL~G~pGtGKTtla~~lA~~l~~~~~ 93 (327)
T TIGR01650 42 DIDPAYLFDKATTKAICAGFAYD----RRVMVQGYHGTGKSTHIEQIAARLNWPCV 93 (327)
T ss_pred CCCCCccCCHHHHHHHHHHHhcC----CcEEEEeCCCChHHHHHHHHHHHHCCCeE
Confidence 34445555555666676666532 34999999999999999999998765543
No 224
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=97.02 E-value=0.006 Score=60.89 Aligned_cols=46 Identities=22% Similarity=0.157 Sum_probs=34.8
Q ss_pred ceeccchhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhh
Q 009306 190 LVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKI 235 (538)
Q Consensus 190 ~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (538)
++|+...++++.+.+..-......|.|+|.+|+||+++|+.+...-
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~s 46 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLS 46 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHhc
Confidence 4677777777777665433334458999999999999999888753
No 225
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.01 E-value=0.0016 Score=64.07 Aligned_cols=50 Identities=20% Similarity=0.179 Sum_probs=38.5
Q ss_pred hHHHHHhhh-cCCCCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEe
Q 009306 197 MKEIESLLR-TGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFAR 246 (538)
Q Consensus 197 l~~l~~~L~-~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 246 (538)
...|..+|. .+-+..+++.|+|++|+||||||..++......-..++|+.
T Consensus 40 i~~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId 90 (321)
T TIGR02012 40 SLSLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFID 90 (321)
T ss_pred CHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEc
Confidence 345566665 55567789999999999999999998887665555667775
No 226
>PTZ00494 tuzin-like protein; Provisional
Probab=97.00 E-value=0.046 Score=55.14 Aligned_cols=180 Identities=11% Similarity=0.042 Sum_probs=97.5
Q ss_pred HHHHHhhhcccccc------CCCCCCCceeccchhHHHHHhhhc-CCCCceEEEEeccCCCchhHHHHHHHHhhccceee
Q 009306 169 EEIVNAILKRLDDT------FHSENEDLVGVRLPMKEIESLLRT-GSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSG 241 (538)
Q Consensus 169 ~~i~~~~~~~~~~~------~~~~~~~~vGR~~~l~~l~~~L~~-~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~ 241 (538)
.-.++.+.+..++. .+.....+|.|+.+=..+.+.|.. +....++++++|.-|+|||+|++....+ ..-.
T Consensus 346 ~~Av~TLsk~~~~~~~~~~~a~a~~~~~V~R~~eE~~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrk---E~~p 422 (664)
T PTZ00494 346 RTAIETLSKAARPRKEEGMLAAAAEAFEVRREDEEALVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRV---EGVA 422 (664)
T ss_pred HHHHHHhhcccCCCcccccccccccccccchhhHHHHHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHH---cCCC
Confidence 33445555554443 245678899999999999888876 4456899999999999999999976543 2233
Q ss_pred EEEEeehhhhhhcCChHHHHHHHHHHHhcCCCCCCchhhcHHHHH-------HHhcCCCeEEEE--ecCCChHHHHHHhc
Q 009306 242 SYFARNVREAEETCRLGDLRQQLLSTLLNDGNVKNFLNTDLNFQS-------RRLTRKKVLIVF--DDVDHPRQIKILVG 312 (538)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~-------~~l~~k~~LlVl--Ddv~~~~~~~~l~~ 312 (538)
.+|+. ++ ...+.++.+...++-.. . ....++++.+. ....++.-+||+ =+-.+..-+-.-.-
T Consensus 423 aV~VD-VR------g~EDtLrsVVKALgV~n-v-e~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL~RVYnE~v 493 (664)
T PTZ00494 423 LVHVD-VG------GTEDTLRSVVRALGVSN-V-EVCGDLLGFVEEAMRGATVKASDGVPFLVMRLREGSDLGRVYGEVV 493 (664)
T ss_pred eEEEE-ec------CCcchHHHHHHHhCCCC-h-hhhccHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcHHHHHHHHH
Confidence 45554 22 22223344444443321 1 11122222222 122344445554 33333322111111
Q ss_pred CcCCCCCCCEEEEeccchhhh---hhcCCCeeEEcCCCCHHHHHHHHHhhh
Q 009306 313 RLDLFASGSRIIITTRDRQVL---ANCGVDEVYQMEELVHDDALRLFSRHA 360 (538)
Q Consensus 313 ~l~~~~~~~~iiiTtR~~~~~---~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 360 (538)
.+..-..-|+|++----+.+- ..+..-..|-+++++.++|.++.....
T Consensus 494 aLacDrRlCHvv~EVplESLT~~n~~LPRLDFy~VPnFSr~QAf~YtqH~l 544 (664)
T PTZ00494 494 SLVSDCQACHIVLAVPMKALTPLNVSSRRLDFYCIPPFSRRQAFAYAEHTL 544 (664)
T ss_pred HHHccchhheeeeechHhhhchhhccCccceeEecCCcCHHHHHHHHhccc
Confidence 111223457777643322210 011123578999999999999776554
No 227
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.98 E-value=0.017 Score=59.39 Aligned_cols=43 Identities=21% Similarity=0.298 Sum_probs=34.0
Q ss_pred cchhHHHHHhhh-----cCCCCceEEEEeccCCCchhHHHHHHHHhhc
Q 009306 194 RLPMKEIESLLR-----TGSTNVYKLGIWGIGGIGKTTIAGAIFNKIS 236 (538)
Q Consensus 194 ~~~l~~l~~~L~-----~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (538)
...+.++..||. ...-+.+++.|+||+|+||||..+.++..+.
T Consensus 88 kkKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskelg 135 (634)
T KOG1970|consen 88 KKKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKELG 135 (634)
T ss_pred HHhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhhC
Confidence 346677777877 3344577999999999999999999998754
No 228
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.96 E-value=0.0026 Score=61.37 Aligned_cols=101 Identities=14% Similarity=0.086 Sum_probs=58.2
Q ss_pred hhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhhcCChHHHHHHHHHHHhcCCCCC
Q 009306 196 PMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEETCRLGDLRQQLLSTLLNDGNVK 275 (538)
Q Consensus 196 ~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~ 275 (538)
.++.|..++.. ....+.|.|+.|+||||+++.+...+.......+.+.+..+.. +..+ .++.-. .
T Consensus 68 ~~~~l~~~~~~---~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~----~~~~-----~q~~v~---~ 132 (264)
T cd01129 68 NLEIFRKLLEK---PHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQ----IPGI-----NQVQVN---E 132 (264)
T ss_pred HHHHHHHHHhc---CCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceec----CCCc-----eEEEeC---C
Confidence 33444455542 2347999999999999999998887654322334443222111 1000 000000 0
Q ss_pred CchhhcHHHHHHHhcCCCeEEEEecCCChHHHHHHh
Q 009306 276 NFLNTDLNFQSRRLTRKKVLIVFDDVDHPRQIKILV 311 (538)
Q Consensus 276 ~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~ 311 (538)
..-......++..++..+-.|+++++.+.+....+.
T Consensus 133 ~~~~~~~~~l~~~lR~~PD~i~vgEiR~~e~a~~~~ 168 (264)
T cd01129 133 KAGLTFARGLRAILRQDPDIIMVGEIRDAETAEIAV 168 (264)
T ss_pred cCCcCHHHHHHHHhccCCCEEEeccCCCHHHHHHHH
Confidence 111134566677788889999999998887665444
No 229
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.96 E-value=0.0026 Score=61.61 Aligned_cols=37 Identities=24% Similarity=0.347 Sum_probs=28.8
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEe
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFAR 246 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 246 (538)
..+++.++|++|+||||++..++..+......+.++.
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~ 107 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAA 107 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEe
Confidence 4678999999999999999999987765543444443
No 230
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.96 E-value=0.002 Score=61.65 Aligned_cols=55 Identities=27% Similarity=0.392 Sum_probs=39.2
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhhcCChHHHHHHHHH
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEETCRLGDLRQQLLS 266 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~ 266 (538)
..+.++|.|.+|.|||||++.+++.++.+|...+++..+.+- .....++.+.+..
T Consensus 68 ~GQr~~If~~~G~GKTtLa~~i~~~i~~~~~~~~V~~~iGer--~~Ev~e~~~~~~~ 122 (274)
T cd01133 68 KGGKIGLFGGAGVGKTVLIMELINNIAKAHGGYSVFAGVGER--TREGNDLYHEMKE 122 (274)
T ss_pred cCCEEEEecCCCCChhHHHHHHHHHHHhcCCCEEEEEEeccC--cHHHHHHHHHHHh
Confidence 345589999999999999999999988777766776655432 2334445555543
No 231
>PRK11823 DNA repair protein RadA; Provisional
Probab=96.95 E-value=0.0042 Score=64.65 Aligned_cols=51 Identities=20% Similarity=0.217 Sum_probs=39.2
Q ss_pred hhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEe
Q 009306 196 PMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFAR 246 (538)
Q Consensus 196 ~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 246 (538)
-+..|.++|..+-....++.|.|++|+|||||+.+++.........++|+.
T Consensus 65 Gi~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs 115 (446)
T PRK11823 65 GIGELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVS 115 (446)
T ss_pred CcHHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 445677777655556778999999999999999999988764444566665
No 232
>PRK06696 uridine kinase; Validated
Probab=96.95 E-value=0.0012 Score=62.11 Aligned_cols=46 Identities=28% Similarity=0.363 Sum_probs=35.3
Q ss_pred ccchhHHHHHhhhc-CCCCceEEEEeccCCCchhHHHHHHHHhhccc
Q 009306 193 VRLPMKEIESLLRT-GSTNVYKLGIWGIGGIGKTTIAGAIFNKISRH 238 (538)
Q Consensus 193 R~~~l~~l~~~L~~-~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 238 (538)
|...+++|.+.+.. ..+...+|+|.|.+|+||||||+.++..+...
T Consensus 3 ~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~ 49 (223)
T PRK06696 3 RKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIKKR 49 (223)
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 55566666665543 33467899999999999999999999987543
No 233
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.94 E-value=0.0038 Score=57.23 Aligned_cols=113 Identities=25% Similarity=0.285 Sum_probs=52.9
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhh--ccceeeEEEEeehhhhhh--cCChHHH-------HHHHHHHHhcCCCCCCch
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKI--SRHFSGSYFARNVREAEE--TCRLGDL-------RQQLLSTLLNDGNVKNFL 278 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~--~~~f~~~~~~~~~~~~~~--~~~~~~l-------~~~l~~~l~~~~~~~~~~ 278 (538)
...++.+.|++|.|||.||.+.+-+. ...|...++....-+... ..-+.++ ...+...+.... .
T Consensus 18 ~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~~p~~d~l~~~~-----~ 92 (205)
T PF02562_consen 18 NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYLRPIYDALEELF-----G 92 (205)
T ss_dssp H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS---------TTTHHHHHHHTTTS------
T ss_pred hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHHHHHHHHHHHHHh-----C
Confidence 34579999999999999999888643 355777777654332111 1111111 111222221110 0
Q ss_pred hhcHHHHH----------HHhcC---CCeEEEEecCCC--hHHHHHHhcCcCCCCCCCEEEEeccch
Q 009306 279 NTDLNFQS----------RRLTR---KKVLIVFDDVDH--PRQIKILVGRLDLFASGSRIIITTRDR 330 (538)
Q Consensus 279 ~~~~~~l~----------~~l~~---k~~LlVlDdv~~--~~~~~~l~~~l~~~~~~~~iiiTtR~~ 330 (538)
....+.+. ..+++ ...+||+|++.+ ..++..++.. .+.+|++|++--..
T Consensus 93 ~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR---~g~~skii~~GD~~ 156 (205)
T PF02562_consen 93 KEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILTR---IGEGSKIIITGDPS 156 (205)
T ss_dssp TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTT---B-TT-EEEEEE---
T ss_pred hHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHcc---cCCCcEEEEecCce
Confidence 11111111 12333 346999999954 4567776544 37899999986443
No 234
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.94 E-value=0.0046 Score=58.46 Aligned_cols=49 Identities=20% Similarity=0.214 Sum_probs=36.5
Q ss_pred HHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEe
Q 009306 198 KEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFAR 246 (538)
Q Consensus 198 ~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 246 (538)
..|.++|..+-....++.|.|++|+|||+|+.+++.........++|+.
T Consensus 7 ~~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is 55 (229)
T TIGR03881 7 EGLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVT 55 (229)
T ss_pred hhHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEE
Confidence 4455666555556778999999999999999998765444455667776
No 235
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.93 E-value=0.0038 Score=58.94 Aligned_cols=49 Identities=14% Similarity=0.086 Sum_probs=33.8
Q ss_pred HHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEe
Q 009306 198 KEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFAR 246 (538)
Q Consensus 198 ~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 246 (538)
..|...+..+-+...++.|.|++|+||||||.+++.....+...++|+.
T Consensus 11 ~~ld~~l~ggi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~ 59 (230)
T PRK08533 11 DELHKRLGGGIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVS 59 (230)
T ss_pred eeeehhhCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEe
Confidence 3444455444455668999999999999999887776544444556655
No 236
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.93 E-value=0.0081 Score=61.36 Aligned_cols=151 Identities=19% Similarity=0.194 Sum_probs=79.8
Q ss_pred CCceeccc---hhHHHHHhhhcC-------CCCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhhcCCh
Q 009306 188 EDLVGVRL---PMKEIESLLRTG-------STNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEETCRL 257 (538)
Q Consensus 188 ~~~vGR~~---~l~~l~~~L~~~-------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 257 (538)
+++-|.+. |++++.+.|... +.=.+-|.++|++|.|||-||++++-+-.-. +|....++.
T Consensus 304 ~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VP----FF~~sGSEF------ 373 (752)
T KOG0734|consen 304 EDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVP----FFYASGSEF------ 373 (752)
T ss_pred ccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCC----eEeccccch------
Confidence 45667765 455555666542 1124569999999999999999998764322 233211111
Q ss_pred HHHHHHHHHHHhcCCCCCCchhhcHHHHHHHhcCCCeEEEEecCCCh-------------HHHHHHhcCcCCCCCCCEEE
Q 009306 258 GDLRQQLLSTLLNDGNVKNFLNTDLNFQSRRLTRKKVLIVFDDVDHP-------------RQIKILVGRLDLFASGSRII 324 (538)
Q Consensus 258 ~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-------------~~~~~l~~~l~~~~~~~~ii 324 (538)
. +++-. .......+.....-.+-|++|.||++|.. ..+..++..++.|.++.-||
T Consensus 374 d----Em~VG--------vGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiI 441 (752)
T KOG0734|consen 374 D----EMFVG--------VGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGII 441 (752)
T ss_pred h----hhhhc--------ccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceE
Confidence 1 11100 00111122222233567999999999742 23666777777666655444
Q ss_pred Ee--ccchhhhh-hc----CCCeeEEcCCCCHHHHHHHHHhhh
Q 009306 325 IT--TRDRQVLA-NC----GVDEVYQMEELVHDDALRLFSRHA 360 (538)
Q Consensus 325 iT--tR~~~~~~-~~----~~~~~~~l~~L~~~ea~~Lf~~~~ 360 (538)
|. |.-++.+. .+ +.+..+.++.-+..--.++|..+.
T Consensus 442 vigATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl 484 (752)
T KOG0734|consen 442 VIGATNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYL 484 (752)
T ss_pred EEeccCChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHH
Confidence 43 22222221 11 234456666555544445555444
No 237
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.92 E-value=0.0047 Score=55.44 Aligned_cols=29 Identities=24% Similarity=0.269 Sum_probs=24.9
Q ss_pred eEEEEeccCCCchhHHHHHHHHhhcccee
Q 009306 212 YKLGIWGIGGIGKTTIAGAIFNKISRHFS 240 (538)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~ 240 (538)
+++.++|.+|+||||+|++++..+++.-.
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i~ 30 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEIW 30 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHhhh
Confidence 46889999999999999999998776543
No 238
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=96.91 E-value=0.017 Score=64.02 Aligned_cols=49 Identities=24% Similarity=0.249 Sum_probs=38.5
Q ss_pred CCceeccchhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhc
Q 009306 188 EDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKIS 236 (538)
Q Consensus 188 ~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (538)
..++|+...++.+.+.+..-......|.|+|++|+|||++|+.++..-.
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s~ 424 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSG 424 (686)
T ss_pred cceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhcC
Confidence 4799999999888776654223344599999999999999999987543
No 239
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=96.90 E-value=0.025 Score=52.40 Aligned_cols=51 Identities=27% Similarity=0.417 Sum_probs=36.6
Q ss_pred CceeccchhHHHHHhhhc-----------CCCCceEEEEeccCCCchhHHHHHHHHhhccce
Q 009306 189 DLVGVRLPMKEIESLLRT-----------GSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHF 239 (538)
Q Consensus 189 ~~vGR~~~l~~l~~~L~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f 239 (538)
+.=|.+-+.+++.+...- +-+..+-+.++|++|+|||.||+++++.....|
T Consensus 156 diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~f 217 (408)
T KOG0727|consen 156 DIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAF 217 (408)
T ss_pred ccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchhe
Confidence 344666666666654321 334567799999999999999999998766554
No 240
>KOG3928 consensus Mitochondrial ribosome small subunit component, mediator of apoptosis DAP3 [Translation, ribosomal structure and biogenesis]
Probab=96.87 E-value=0.019 Score=57.01 Aligned_cols=57 Identities=16% Similarity=0.024 Sum_probs=38.1
Q ss_pred CeeEEcCCCCHHHHHHHHHhhhcCCCCC-CCchHHHHHHHHHHhcCCcHHHHHHHHHh
Q 009306 339 DEVYQMEELVHDDALRLFSRHAFGGDHP-HESHTELACKTIKYARGVPLALEVLGRYL 395 (538)
Q Consensus 339 ~~~~~l~~L~~~ea~~Lf~~~~~~~~~~-~~~~~~~~~~i~~~~~G~PLal~~~~~~L 395 (538)
..++++++++.+|+.++.....-.+-.. ....++.-+++.-..+|||--++.++.++
T Consensus 403 f~pi~v~nYt~~E~~~~i~YYl~~nwl~kkv~~Ee~~kql~fLSngNP~l~~~lca~~ 460 (461)
T KOG3928|consen 403 FVPIEVENYTLDEFEALIDYYLQSNWLLKKVPGEENIKQLYFLSNGNPSLMERLCAFL 460 (461)
T ss_pred cCccccCCCCHHHHHHHHHHHHHhhHHHhhcCcccchhhhhhhcCCCHHHHHHHHHhc
Confidence 3468899999999999887765211100 00114456778888899997777776655
No 241
>PRK07667 uridine kinase; Provisional
Probab=96.87 E-value=0.0019 Score=59.23 Aligned_cols=42 Identities=24% Similarity=0.436 Sum_probs=32.1
Q ss_pred hHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhccc
Q 009306 197 MKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRH 238 (538)
Q Consensus 197 l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 238 (538)
++.|.+.+..-.+...+|+|.|.+|+||||+|..+...+...
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~~~ 44 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENMKQE 44 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 344555555544556899999999999999999999977543
No 242
>PRK07261 topology modulation protein; Provisional
Probab=96.86 E-value=0.004 Score=55.89 Aligned_cols=23 Identities=35% Similarity=0.551 Sum_probs=20.6
Q ss_pred EEEEeccCCCchhHHHHHHHHhh
Q 009306 213 KLGIWGIGGIGKTTIAGAIFNKI 235 (538)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~~ 235 (538)
.|.|+|++|+||||||+.++..+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 38999999999999999998764
No 243
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.85 E-value=0.0012 Score=56.84 Aligned_cols=37 Identities=35% Similarity=0.567 Sum_probs=28.5
Q ss_pred EEEEeccCCCchhHHHHHHHHhhccc-ee-eEEEEeehh
Q 009306 213 KLGIWGIGGIGKTTIAGAIFNKISRH-FS-GSYFARNVR 249 (538)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~~~~~-f~-~~~~~~~~~ 249 (538)
-++|+|++|+||||++..+++.++.. |. +.+|..-++
T Consensus 7 ki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR 45 (179)
T COG1618 7 KIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVR 45 (179)
T ss_pred EEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeee
Confidence 48999999999999999999988766 54 344444333
No 244
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=96.84 E-value=0.025 Score=60.26 Aligned_cols=50 Identities=20% Similarity=0.342 Sum_probs=41.4
Q ss_pred CCCceeccchhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhc
Q 009306 187 NEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKIS 236 (538)
Q Consensus 187 ~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (538)
...++|+...++++.+.+..-......|.|+|..|+|||++|+.+...-.
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~ 235 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASP 235 (509)
T ss_pred CCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCC
Confidence 46799999999999888776444455699999999999999999998643
No 245
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.84 E-value=0.011 Score=53.54 Aligned_cols=125 Identities=16% Similarity=0.192 Sum_probs=62.7
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhhcCChHHHHHHHHHHHh---cCC-----------CCC
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEETCRLGDLRQQLLSTLL---NDG-----------NVK 275 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~---~~~-----------~~~ 275 (538)
...+++|.|+.|.|||||++.++..... ..+.+++... .. ......+-..++ ... ...
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~-~~G~i~~~g~-~~------~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~ 98 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGDLKP-QQGEITLDGV-PV------SDLEKALSSLISVLNQRPYLFDTTLRNNLGRR 98 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCCC-CCCEEEECCE-EH------HHHHHHHHhhEEEEccCCeeecccHHHhhccc
Confidence 3457999999999999999999875433 2334444311 00 000000000000 000 000
Q ss_pred -CchhhcHHHHHHHhcCCCeEEEEecCC---ChHHHHHHhcCcCCCCCCCEEEEeccchhhhhhcCCCeeEEc
Q 009306 276 -NFLNTDLNFQSRRLTRKKVLIVFDDVD---HPRQIKILVGRLDLFASGSRIIITTRDRQVLANCGVDEVYQM 344 (538)
Q Consensus 276 -~~~~~~~~~l~~~l~~k~~LlVlDdv~---~~~~~~~l~~~l~~~~~~~~iiiTtR~~~~~~~~~~~~~~~l 344 (538)
..-+...-.+.+.+..++-++++|+.. +....+.+...+.....+..||++|.+...... .++++.+
T Consensus 99 LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~--~d~~~~l 169 (178)
T cd03247 99 FSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEH--MDKILFL 169 (178)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh--CCEEEEE
Confidence 111222233445566788899999873 222222222222211236678888888766543 3455544
No 246
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.84 E-value=0.0014 Score=57.27 Aligned_cols=36 Identities=25% Similarity=0.328 Sum_probs=30.2
Q ss_pred ceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEe
Q 009306 211 VYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFAR 246 (538)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 246 (538)
..+|.|+|.+|+||||||+++..++......++++.
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEec
Confidence 357999999999999999999999988777777775
No 247
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.83 E-value=0.0037 Score=59.00 Aligned_cols=125 Identities=19% Similarity=0.126 Sum_probs=67.7
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEee-hhhhhhcCChHHHHHHHHHHHhcCC------CCC-Cchhhc
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARN-VREAEETCRLGDLRQQLLSTLLNDG------NVK-NFLNTD 281 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~-~~~~~~~~~~~~l~~~l~~~l~~~~------~~~-~~~~~~ 281 (538)
...+++|+|.+|+|||||++.+..-.......+.|-.. +.... .........+++...+... +-. ..-+..
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~-~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQ 116 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS-KEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQ 116 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc-hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhh
Confidence 34579999999999999999998765544333333210 00000 1122334445555544221 111 112222
Q ss_pred HHHHHHHhcCCCeEEEEecCCCh------HHHHHHhcCcCCCCCCCEEEEeccchhhhhhc
Q 009306 282 LNFQSRRLTRKKVLIVFDDVDHP------RQIKILVGRLDLFASGSRIIITTRDRQVLANC 336 (538)
Q Consensus 282 ~~~l~~~l~~k~~LlVlDdv~~~------~~~~~l~~~l~~~~~~~~iiiTtR~~~~~~~~ 336 (538)
.-.+.+.+.-+|-++|.|+.-+. .++-.++..+.. ..+...++.|-+-.+...+
T Consensus 117 Ri~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~-~~~lt~lFIsHDL~vv~~i 176 (268)
T COG4608 117 RIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQE-ELGLTYLFISHDLSVVRYI 176 (268)
T ss_pred hHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHH-HhCCeEEEEEEEHHhhhhh
Confidence 33455667889999999987332 233333332221 2356677777777666554
No 248
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=96.82 E-value=0.0054 Score=63.87 Aligned_cols=52 Identities=19% Similarity=0.221 Sum_probs=40.1
Q ss_pred chhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEe
Q 009306 195 LPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFAR 246 (538)
Q Consensus 195 ~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 246 (538)
.-+..|.++|..+-....++.|.|.+|+|||||+.+++.........++|+.
T Consensus 78 TGi~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs 129 (454)
T TIGR00416 78 SGFGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVS 129 (454)
T ss_pred cCcHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence 3456677777666566788999999999999999999887765544566765
No 249
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=96.81 E-value=0.029 Score=51.94 Aligned_cols=147 Identities=20% Similarity=0.332 Sum_probs=81.9
Q ss_pred eccchhHHHHHhhhc-----------CCCCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhhcCChHHH
Q 009306 192 GVRLPMKEIESLLRT-----------GSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEETCRLGDL 260 (538)
Q Consensus 192 GR~~~l~~l~~~L~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l 260 (538)
|-+.++++|.+.+.- +-...+-+.++|++|.|||-||+++++.. .+.|+. ++. ..+
T Consensus 151 gLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht-----~c~fir-vsg-------sel 217 (404)
T KOG0728|consen 151 GLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHT-----DCTFIR-VSG-------SEL 217 (404)
T ss_pred cHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhc-----ceEEEE-ech-------HHH
Confidence 345566666554432 12345568999999999999999998753 333443 211 122
Q ss_pred HHHHHHHHhcCCCCCCchhhcHHHHHHHhcCCCeEEEEecCCCh-------------H---HHHHHhcCcCCC--CCCCE
Q 009306 261 RQQLLSTLLNDGNVKNFLNTDLNFQSRRLTRKKVLIVFDDVDHP-------------R---QIKILVGRLDLF--ASGSR 322 (538)
Q Consensus 261 ~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-------------~---~~~~l~~~l~~~--~~~~~ 322 (538)
.+..+..-. .-..++.-.- -...|.+|..|++|+. + ..-.++..+..| ..+.+
T Consensus 218 vqk~igegs------rmvrelfvma---rehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknik 288 (404)
T KOG0728|consen 218 VQKYIGEGS------RMVRELFVMA---REHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIK 288 (404)
T ss_pred HHHHhhhhH------HHHHHHHHHH---HhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceE
Confidence 222211100 0011111111 1356889999998642 1 122344444433 34677
Q ss_pred EEEeccchhhhh-----hcCCCeeEEcCCCCHHHHHHHHHhhh
Q 009306 323 IIITTRDRQVLA-----NCGVDEVYQMEELVHDDALRLFSRHA 360 (538)
Q Consensus 323 iiiTtR~~~~~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~~ 360 (538)
||+.|...+++. .-..++-++.++-+.+.-.+++.-+.
T Consensus 289 vimatnridild~allrpgridrkiefp~p~e~ar~~ilkihs 331 (404)
T KOG0728|consen 289 VIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHS 331 (404)
T ss_pred EEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhh
Confidence 888776544432 22455678888888887778777665
No 250
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.81 E-value=0.0087 Score=55.03 Aligned_cols=46 Identities=17% Similarity=0.136 Sum_probs=30.9
Q ss_pred hhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhccceeeEEE
Q 009306 196 PMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYF 244 (538)
Q Consensus 196 ~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~ 244 (538)
+.+.+...+.. +.+++.|+|++|.||||+++.+...+...-..+++
T Consensus 6 Q~~a~~~~l~~---~~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~ 51 (196)
T PF13604_consen 6 QREAVRAILTS---GDRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIG 51 (196)
T ss_dssp HHHHHHHHHHC---TCSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEE
T ss_pred HHHHHHHHHhc---CCeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEE
Confidence 34445555542 34578899999999999999988876665333333
No 251
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.81 E-value=0.0021 Score=59.01 Aligned_cols=35 Identities=17% Similarity=0.208 Sum_probs=27.3
Q ss_pred eEEEEeccCCCchhHHHHHHHHhhccceeeEEEEe
Q 009306 212 YKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFAR 246 (538)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 246 (538)
+++.++|+.|+||||.+.+++.+++.+-..+..++
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis 36 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALIS 36 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceeec
Confidence 68999999999999999999988776644455554
No 252
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.79 E-value=0.0021 Score=61.71 Aligned_cols=49 Identities=20% Similarity=0.202 Sum_probs=33.9
Q ss_pred HHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhc--c----ceeeEEEEe
Q 009306 198 KEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKIS--R----HFSGSYFAR 246 (538)
Q Consensus 198 ~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~--~----~f~~~~~~~ 246 (538)
..|.++|..+-....+.=|+|++|+|||+||..++-... . .-..++|++
T Consensus 25 ~~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyid 79 (256)
T PF08423_consen 25 KSLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYID 79 (256)
T ss_dssp HHHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEE
T ss_pred HHHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEe
Confidence 456667754444566788999999999999998876432 1 123467776
No 253
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.79 E-value=0.0076 Score=54.23 Aligned_cols=23 Identities=22% Similarity=0.280 Sum_probs=20.2
Q ss_pred CceEEEEeccCCCchhHHHHHHH
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIF 232 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~ 232 (538)
...+++|.|+.|+|||||.+.+.
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 34579999999999999999885
No 254
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.78 E-value=0.006 Score=53.04 Aligned_cols=105 Identities=17% Similarity=0.171 Sum_probs=56.2
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhhcCChHHHHHHHHHHHhcCCCCCCchhhcHHHHHHHh
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEETCRLGDLRQQLLSTLLNDGNVKNFLNTDLNFQSRRL 289 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~~l 289 (538)
...+++|.|+.|.|||||++.++..... ..+.+++.......--.. . ..-+...-.+.+.+
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~-~~G~i~~~~~~~i~~~~~-----------------l-S~G~~~rv~laral 85 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGELEP-DEGIVTWGSTVKIGYFEQ-----------------L-SGGEKMRLALAKLL 85 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCCC-CceEEEECCeEEEEEEcc-----------------C-CHHHHHHHHHHHHH
Confidence 3457999999999999999998875432 234444431100000000 0 11112222344555
Q ss_pred cCCCeEEEEecCC---ChHHHHHHhcCcCCCCCCCEEEEeccchhhhhh
Q 009306 290 TRKKVLIVFDDVD---HPRQIKILVGRLDLFASGSRIIITTRDRQVLAN 335 (538)
Q Consensus 290 ~~k~~LlVlDdv~---~~~~~~~l~~~l~~~~~~~~iiiTtR~~~~~~~ 335 (538)
..++-++++|+.. +....+.+...+... +..||++|.+......
T Consensus 86 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~~ 132 (144)
T cd03221 86 LENPNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLDQ 132 (144)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHH
Confidence 6778899999873 222222332222211 2467888877655443
No 255
>PRK06762 hypothetical protein; Provisional
Probab=96.78 E-value=0.0081 Score=53.59 Aligned_cols=24 Identities=38% Similarity=0.448 Sum_probs=22.2
Q ss_pred eEEEEeccCCCchhHHHHHHHHhh
Q 009306 212 YKLGIWGIGGIGKTTIAGAIFNKI 235 (538)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~~ 235 (538)
.+++|+|++|+||||+|+.++..+
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999999886
No 256
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.73 E-value=0.0077 Score=54.09 Aligned_cols=129 Identities=19% Similarity=0.287 Sum_probs=62.6
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhhcCChHHHHHHHHHHHhcCCCC---------CCchhh
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEETCRLGDLRQQLLSTLLNDGNV---------KNFLNT 280 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~---------~~~~~~ 280 (538)
....++|.|+.|.|||||.+.++..... ..+.+++.... ... .......+.+ ..+...... -..-+.
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~~~~-~~G~i~~~g~~-~~~-~~~~~~~~~i-~~~~~~~~~~~~t~~e~lLS~G~~ 102 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRLYDP-TSGEILIDGVD-LRD-LDLESLRKNI-AYVPQDPFLFSGTIRENILSGGQR 102 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCCC-CCCEEEECCEE-hhh-cCHHHHHhhE-EEEcCCchhccchHHHHhhCHHHH
Confidence 3457999999999999999999876443 33444443210 000 0000000000 000000000 000111
Q ss_pred cHHHHHHHhcCCCeEEEEecCC---ChHHHHHHhcCcCCCCCCCEEEEeccchhhhhhcCCCeeEEc
Q 009306 281 DLNFQSRRLTRKKVLIVFDDVD---HPRQIKILVGRLDLFASGSRIIITTRDRQVLANCGVDEVYQM 344 (538)
Q Consensus 281 ~~~~l~~~l~~k~~LlVlDdv~---~~~~~~~l~~~l~~~~~~~~iiiTtR~~~~~~~~~~~~~~~l 344 (538)
..-.+...+..++-++++|+-. +....+.+...+.....+..||++|.+...... .++++.+
T Consensus 103 ~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~--~d~~~~l 167 (171)
T cd03228 103 QRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD--ADRIIVL 167 (171)
T ss_pred HHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh--CCEEEEE
Confidence 2223445566788899999873 222222222222111235678888887766544 3455544
No 257
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.70 E-value=0.0042 Score=53.77 Aligned_cols=24 Identities=25% Similarity=0.414 Sum_probs=21.1
Q ss_pred EEEEeccCCCchhHHHHHHHHhhc
Q 009306 213 KLGIWGIGGIGKTTIAGAIFNKIS 236 (538)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~~~ 236 (538)
+|.++|++|+||||+|+.+.....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Confidence 578999999999999999987654
No 258
>CHL00206 ycf2 Ycf2; Provisional
Probab=96.70 E-value=0.017 Score=67.96 Aligned_cols=27 Identities=11% Similarity=0.099 Sum_probs=23.2
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhhc
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKIS 236 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (538)
..+-|.++|++|+|||.||++++.+..
T Consensus 1629 pPKGILLiGPPGTGKTlLAKALA~es~ 1655 (2281)
T CHL00206 1629 PSRGILVIGSIGTGRSYLVKYLATNSY 1655 (2281)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHhcC
Confidence 355699999999999999999998743
No 259
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.68 E-value=0.01 Score=53.06 Aligned_cols=126 Identities=20% Similarity=0.131 Sum_probs=62.1
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehh---hhhhcCCh--HHHHHHHHHHHhcCCCCC-CchhhcHH
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVR---EAEETCRL--GDLRQQLLSTLLNDGNVK-NFLNTDLN 283 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~---~~~~~~~~--~~l~~~l~~~l~~~~~~~-~~~~~~~~ 283 (538)
....++|.|+.|.|||||++.++...... .+.+++...+ -..+...+ ..+.+.+... .... ..-+...-
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~----~~~~LS~G~~~rv 100 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLWPWG-SGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYP----WDDVLSGGEQQRL 100 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCC-CceEEECCCceEEEECCCCccccccHHHHhhcc----CCCCCCHHHHHHH
Confidence 34579999999999999999998764322 2222221100 00111111 1222222110 1111 22222333
Q ss_pred HHHHHhcCCCeEEEEecCC---ChHHHHHHhcCcCCCCCCCEEEEeccchhhhhhcCCCeeEEc
Q 009306 284 FQSRRLTRKKVLIVFDDVD---HPRQIKILVGRLDLFASGSRIIITTRDRQVLANCGVDEVYQM 344 (538)
Q Consensus 284 ~l~~~l~~k~~LlVlDdv~---~~~~~~~l~~~l~~~~~~~~iiiTtR~~~~~~~~~~~~~~~l 344 (538)
.+.+.+..++-++++|+-. +....+.+...+... +..+|++|.+...... .++++.+
T Consensus 101 ~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~~--~d~i~~l 160 (166)
T cd03223 101 AFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWKF--HDRVLDL 160 (166)
T ss_pred HHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHhh--CCEEEEE
Confidence 4455566788899999863 222222222222211 3567888877655432 3445544
No 260
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.67 E-value=0.041 Score=55.58 Aligned_cols=150 Identities=19% Similarity=0.197 Sum_probs=79.4
Q ss_pred ceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhhcCChHHHHHHHHHHHhcCCCCCCchhhcHHHHHHHhc
Q 009306 211 VYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEETCRLGDLRQQLLSTLLNDGNVKNFLNTDLNFQSRRLT 290 (538)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~ 290 (538)
.|-..++||||.|||++..++++.+.- + ++.-.+...... .+ ++.|+.. .
T Consensus 235 KRGYLLYGPPGTGKSS~IaAmAn~L~y--d--IydLeLt~v~~n---~d-Lr~LL~~----------------------t 284 (457)
T KOG0743|consen 235 KRGYLLYGPPGTGKSSFIAAMANYLNY--D--IYDLELTEVKLD---SD-LRHLLLA----------------------T 284 (457)
T ss_pred hccceeeCCCCCCHHHHHHHHHhhcCC--c--eEEeeeccccCc---HH-HHHHHHh----------------------C
Confidence 456899999999999999999987542 2 222211111111 11 2222211 2
Q ss_pred CCCeEEEEecCCChHH--------------------HHHHhcCcC--CCCC-CCEE-EEeccchhhhhh--c---CCCee
Q 009306 291 RKKVLIVFDDVDHPRQ--------------------IKILVGRLD--LFAS-GSRI-IITTRDRQVLAN--C---GVDEV 341 (538)
Q Consensus 291 ~k~~LlVlDdv~~~~~--------------------~~~l~~~l~--~~~~-~~~i-iiTtR~~~~~~~--~---~~~~~ 341 (538)
..+-+|||.|+|..-+ +--|+..+. |..+ +-|| |+||.....+.. + +.+-.
T Consensus 285 ~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmh 364 (457)
T KOG0743|consen 285 PNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMH 364 (457)
T ss_pred CCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeE
Confidence 3556888888864210 112333332 2223 2355 455554433221 1 23345
Q ss_pred EEcCCCCHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhcCCcHHHHHHHHHh
Q 009306 342 YQMEELVHDDALRLFSRHAFGGDHPHESHTELACKTIKYARGVPLALEVLGRYL 395 (538)
Q Consensus 342 ~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~L 395 (538)
+.+.-=+.+....|+.+..... . ...++.+|.+...|.-+.=..++..|
T Consensus 365 I~mgyCtf~~fK~La~nYL~~~-~----~h~L~~eie~l~~~~~~tPA~V~e~l 413 (457)
T KOG0743|consen 365 IYMGYCTFEAFKTLASNYLGIE-E----DHRLFDEIERLIEETEVTPAQVAEEL 413 (457)
T ss_pred EEcCCCCHHHHHHHHHHhcCCC-C----CcchhHHHHHHhhcCccCHHHHHHHH
Confidence 6788888888888888877221 1 23455566655566544444555544
No 261
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.67 E-value=0.0064 Score=55.11 Aligned_cols=123 Identities=16% Similarity=0.169 Sum_probs=61.7
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeeh--hhhhh---cCChHHHHHHHHHHHhcCCC-----CC-Cch
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNV--REAEE---TCRLGDLRQQLLSTLLNDGN-----VK-NFL 278 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~--~~~~~---~~~~~~l~~~l~~~l~~~~~-----~~-~~~ 278 (538)
...+++|.|+.|.|||||++.++..... ..+.+++... ..... ...+. ...+++..++.... .. ..-
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~~~-~~G~v~~~g~~~~~~~~~~~~~~i~-~~~q~l~~~gl~~~~~~~~~~LS~G 101 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLLKP-SSGEILLDGKDLASLSPKELARKIA-YVPQALELLGLAHLADRPFNELSGG 101 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC-CCcEEEECCEECCcCCHHHHHHHHh-HHHHHHHHcCCHhHhcCCcccCCHH
Confidence 3457999999999999999999875433 3444444311 10000 00111 11113333221110 01 111
Q ss_pred hhcHHHHHHHhcCCCeEEEEecCC---ChHHHHHHhcCcCCC-CC-CCEEEEeccchhhhh
Q 009306 279 NTDLNFQSRRLTRKKVLIVFDDVD---HPRQIKILVGRLDLF-AS-GSRIIITTRDRQVLA 334 (538)
Q Consensus 279 ~~~~~~l~~~l~~k~~LlVlDdv~---~~~~~~~l~~~l~~~-~~-~~~iiiTtR~~~~~~ 334 (538)
+...-.+.+.+...+-++++|+.. +....+.+...+... .. +..||++|.+.....
T Consensus 102 ~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~ 162 (180)
T cd03214 102 ERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAA 162 (180)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 222333445566788899999873 222233332222211 22 567888887765543
No 262
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=96.66 E-value=0.0078 Score=53.47 Aligned_cols=118 Identities=15% Similarity=0.043 Sum_probs=60.1
Q ss_pred eEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhhcCChHHHHHHHHHHH---hcC-----CCCC---Cchhh
Q 009306 212 YKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEETCRLGDLRQQLLSTL---LND-----GNVK---NFLNT 280 (538)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l---~~~-----~~~~---~~~~~ 280 (538)
..+-|++..|.||||.|..++.+...+-..++.+...... ...+-...++.+.-.+ +.. .+.. .....
T Consensus 6 Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~-~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~ 84 (173)
T TIGR00708 6 GIIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGA-WPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAIAKA 84 (173)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCC-cccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHHHH
Confidence 4677888899999999999998866554444333222111 1112222222221000 000 0000 11222
Q ss_pred cHHHHHHHhcCC-CeEEEEecCCCh-----HHHHHHhcCcCCCCCCCEEEEeccch
Q 009306 281 DLNFQSRRLTRK-KVLIVFDDVDHP-----RQIKILVGRLDLFASGSRIIITTRDR 330 (538)
Q Consensus 281 ~~~~l~~~l~~k-~~LlVlDdv~~~-----~~~~~l~~~l~~~~~~~~iiiTtR~~ 330 (538)
..+..++.+... -=+||||++-.. -..+.+...+...+++..||+|-|+.
T Consensus 85 ~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 85 AWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 334444555444 459999998321 11222222333335788999999986
No 263
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.64 E-value=0.035 Score=58.84 Aligned_cols=174 Identities=20% Similarity=0.179 Sum_probs=93.0
Q ss_pred CceeccchhHHHHHhhhcCC-----------CCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhhcCCh
Q 009306 189 DLVGVRLPMKEIESLLRTGS-----------TNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEETCRL 257 (538)
Q Consensus 189 ~~vGR~~~l~~l~~~L~~~~-----------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 257 (538)
++-|.....+.|++.+.-.. .-..-|.++|++|+|||-||.+++....-+ |++. .++
T Consensus 668 digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~-----fisv-------KGP 735 (952)
T KOG0735|consen 668 DIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLR-----FISV-------KGP 735 (952)
T ss_pred ecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCee-----EEEe-------cCH
Confidence 44555555555665554221 112348999999999999999988764332 3331 121
Q ss_pred HHHHHHHHHHHhcCCCCCCchhhcHHHHHHHhcCCCeEEEEecCCCh-------------HHHHHHhcCcCCC--CCCCE
Q 009306 258 GDLRQQLLSTLLNDGNVKNFLNTDLNFQSRRLTRKKVLIVFDDVDHP-------------RQIKILVGRLDLF--ASGSR 322 (538)
Q Consensus 258 ~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-------------~~~~~l~~~l~~~--~~~~~ 322 (538)
++++...+. +.+.......+.-..+|+++.+|++|+. ..+..++..+... -.|.-
T Consensus 736 -----ElL~KyIGa-----SEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~ 805 (952)
T KOG0735|consen 736 -----ELLSKYIGA-----SEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVY 805 (952)
T ss_pred -----HHHHHHhcc-----cHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEE
Confidence 233333222 1122222233333569999999999753 2345555554421 23555
Q ss_pred EEE-eccchhh----hhhcCCCeeEEcCCCCHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhcCCcHH
Q 009306 323 III-TTRDRQV----LANCGVDEVYQMEELVHDDALRLFSRHAFGGDHPHESHTELACKTIKYARGVPLA 387 (538)
Q Consensus 323 iii-TtR~~~~----~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLa 387 (538)
|+- |||..-+ +..-+.++.+.-+.-+..|-+++|....-. ... ...-..+.++.++.|..-|
T Consensus 806 i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s--~~~-~~~vdl~~~a~~T~g~tgA 872 (952)
T KOG0735|consen 806 ILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNS--LLK-DTDVDLECLAQKTDGFTGA 872 (952)
T ss_pred EEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhc--cCC-ccccchHHHhhhcCCCchh
Confidence 554 4454422 111123445555666777777877766511 111 1122356677788887643
No 264
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.63 E-value=0.012 Score=51.45 Aligned_cols=24 Identities=38% Similarity=0.495 Sum_probs=21.5
Q ss_pred EEEEeccCCCchhHHHHHHHHhhc
Q 009306 213 KLGIWGIGGIGKTTIAGAIFNKIS 236 (538)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~~~ 236 (538)
++.|+|.+|+||||||+.+...+.
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~ 24 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLF 24 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999998765
No 265
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.61 E-value=0.0043 Score=65.52 Aligned_cols=101 Identities=13% Similarity=0.084 Sum_probs=63.1
Q ss_pred chhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhhcCChHHHHHHHHHHHhcC---
Q 009306 195 LPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEETCRLGDLRQQLLSTLLND--- 271 (538)
Q Consensus 195 ~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~--- 271 (538)
.-+..|.++|..+-....++.|.|++|+|||||+.+++.....+-..++|+.. ......+.+..- .++-.
T Consensus 247 tGi~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~------eEs~~~i~~~~~-~lg~~~~~ 319 (484)
T TIGR02655 247 SGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAY------EESRAQLLRNAY-SWGIDFEE 319 (484)
T ss_pred CChHhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEe------eCCHHHHHHHHH-HcCCChHH
Confidence 34567778887766777889999999999999999999987666556666652 223333333321 11110
Q ss_pred ------------CCCCCchhhcHHHHHHHhcC-CCeEEEEecCC
Q 009306 272 ------------GNVKNFLNTDLNFQSRRLTR-KKVLIVFDDVD 302 (538)
Q Consensus 272 ------------~~~~~~~~~~~~~l~~~l~~-k~~LlVlDdv~ 302 (538)
.+.....+.....+.+.+.. ++-++|+|.+.
T Consensus 320 ~~~~g~l~~~~~~p~~~~~~~~~~~i~~~i~~~~~~~vvIDsi~ 363 (484)
T TIGR02655 320 MEQQGLLKIICAYPESAGLEDHLQIIKSEIADFKPARIAIDSLS 363 (484)
T ss_pred HhhCCcEEEEEcccccCChHHHHHHHHHHHHHcCCCEEEEcCHH
Confidence 01112234455555555543 56789999874
No 266
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.61 E-value=0.009 Score=56.93 Aligned_cols=95 Identities=16% Similarity=0.149 Sum_probs=60.9
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhhccceeeEEE-EeehhhhhhcCChHHHHHHHHHHHhcCCCCCCchhhcHHHHHHH
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYF-ARNVREAEETCRLGDLRQQLLSTLLNDGNVKNFLNTDLNFQSRR 288 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~-~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~~ 288 (538)
....|.|+|+.|+||||-...+.+.+-.++...+. +.+ +-+..-+--..+........+.....+.++..
T Consensus 124 ~~GLILVTGpTGSGKSTTlAamId~iN~~~~~HIlTIED---------PIE~vh~skkslI~QREvG~dT~sF~~aLraA 194 (353)
T COG2805 124 PRGLILVTGPTGSGKSTTLAAMIDYINKHKAKHILTIED---------PIEYVHESKKSLINQREVGRDTLSFANALRAA 194 (353)
T ss_pred CCceEEEeCCCCCcHHHHHHHHHHHHhccCCcceEEecC---------chHhhhcchHhhhhHHHhcccHHHHHHHHHHH
Confidence 34579999999999998777777776655544333 221 11111111111222223335566677888999
Q ss_pred hcCCCeEEEEecCCChHHHHHHhcC
Q 009306 289 LTRKKVLIVFDDVDHPRQIKILVGR 313 (538)
Q Consensus 289 l~~k~~LlVlDdv~~~~~~~~l~~~ 313 (538)
|+.-|=+|++-+..+.+.+..-+.+
T Consensus 195 LReDPDVIlvGEmRD~ETi~~ALtA 219 (353)
T COG2805 195 LREDPDVILVGEMRDLETIRLALTA 219 (353)
T ss_pred hhcCCCEEEEeccccHHHHHHHHHH
Confidence 9999999999999888877655544
No 267
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.57 E-value=0.0046 Score=61.57 Aligned_cols=49 Identities=16% Similarity=0.163 Sum_probs=34.7
Q ss_pred HHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhc--cc----eeeEEEEe
Q 009306 198 KEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKIS--RH----FSGSYFAR 246 (538)
Q Consensus 198 ~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~--~~----f~~~~~~~ 246 (538)
..|.++|..+-....+.-|+|++|+|||+|+.+++-... .. -..++|++
T Consensus 113 ~~LD~lLgGGi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyId 167 (344)
T PLN03187 113 QALDELLGGGIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYID 167 (344)
T ss_pred HhHHhhcCCCCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEE
Confidence 455666765556677888999999999999999875321 11 23567776
No 268
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=96.56 E-value=0.0068 Score=54.66 Aligned_cols=119 Identities=15% Similarity=0.057 Sum_probs=62.0
Q ss_pred ceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhhcCChHHHHHHHH-HH---HhcC-----CCCC---Cch
Q 009306 211 VYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEETCRLGDLRQQLL-ST---LLND-----GNVK---NFL 278 (538)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~-~~---l~~~-----~~~~---~~~ 278 (538)
...+.|+|..|-||||.|..++.+...+-..+..+...... ...+-...++.+. -. .+.. .+.. ...
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~-~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~~~ 100 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGA-WSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDIAAA 100 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCC-CccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHHHH
Confidence 34689999999999999999998766554444444322221 1112222222210 00 0000 0000 111
Q ss_pred hhcHHHHHHHhcC-CCeEEEEecCCCh-----HHHHHHhcCcCCCCCCCEEEEeccch
Q 009306 279 NTDLNFQSRRLTR-KKVLIVFDDVDHP-----RQIKILVGRLDLFASGSRIIITTRDR 330 (538)
Q Consensus 279 ~~~~~~l~~~l~~-k~~LlVlDdv~~~-----~~~~~l~~~l~~~~~~~~iiiTtR~~ 330 (538)
....+..++.+.. +-=+||||++-.. -..+.+...+...+++..||+|-|+.
T Consensus 101 ~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~ 158 (191)
T PRK05986 101 REGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGA 158 (191)
T ss_pred HHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCC
Confidence 2233444455544 4459999998321 11233333333335788999999976
No 269
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.55 E-value=0.058 Score=48.17 Aligned_cols=79 Identities=9% Similarity=0.036 Sum_probs=41.7
Q ss_pred EEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhhcCChHHHHHHHHHHHhcCCCCCCchhhcHHHHHHHhcC--
Q 009306 214 LGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEETCRLGDLRQQLLSTLLNDGNVKNFLNTDLNFQSRRLTR-- 291 (538)
Q Consensus 214 v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~-- 291 (538)
+.|.|.+|+|||++|.+++... ...++|+.. ....+ .++.+.+.. .....+......+....+.+.+..
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~---~~~~~y~at----~~~~d-~em~~rI~~-H~~~R~~~w~t~E~~~~l~~~l~~~~ 72 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAEL---GGPVTYIAT----AEAFD-DEMAERIAR-HRKRRPAHWRTIETPRDLVSALKELD 72 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhc---CCCeEEEEc----cCcCC-HHHHHHHHH-HHHhCCCCceEeecHHHHHHHHHhcC
Confidence 6789999999999999998762 234555541 11222 123333332 222222222222333334444422
Q ss_pred CCeEEEEecC
Q 009306 292 KKVLIVFDDV 301 (538)
Q Consensus 292 k~~LlVlDdv 301 (538)
+.-.++||.+
T Consensus 73 ~~~~VLIDcl 82 (169)
T cd00544 73 PGDVVLIDCL 82 (169)
T ss_pred CCCEEEEEcH
Confidence 3447999986
No 270
>PRK05973 replicative DNA helicase; Provisional
Probab=96.52 E-value=0.012 Score=55.46 Aligned_cols=38 Identities=13% Similarity=-0.040 Sum_probs=29.9
Q ss_pred CCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEe
Q 009306 209 TNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFAR 246 (538)
Q Consensus 209 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 246 (538)
....++.|.|.+|+|||+++.+++.....+...++|+.
T Consensus 62 ~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfS 99 (237)
T PRK05973 62 KPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFT 99 (237)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 45668999999999999999999887655555566655
No 271
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.52 E-value=0.0017 Score=59.26 Aligned_cols=94 Identities=20% Similarity=0.166 Sum_probs=51.9
Q ss_pred ceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhhcCChHHHHHHHHHHHhc-CCCC-CCchhhcHHHHHHH
Q 009306 211 VYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEETCRLGDLRQQLLSTLLN-DGNV-KNFLNTDLNFQSRR 288 (538)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~-~~~~-~~~~~~~~~~l~~~ 288 (538)
...++|.|+.|+|||||++.++..+.... ..+.+.+..+..... .... .+.. .... ..........+...
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~~~~-~~i~ied~~E~~~~~------~~~~-~~~~~~~~~~~~~~~~~~~~l~~~ 96 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIPPDE-RIITIEDTAELQLPH------PNWV-RLVTRPGNVEGSGEVTMADLLRSA 96 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCCCC-CEEEECCccccCCCC------CCEE-EEEEecCCCCCCCccCHHHHHHHH
Confidence 45799999999999999999998765432 333333211111000 0000 0000 0000 01112334555666
Q ss_pred hcCCCeEEEEecCCChHHHHHHhc
Q 009306 289 LTRKKVLIVFDDVDHPRQIKILVG 312 (538)
Q Consensus 289 l~~k~~LlVlDdv~~~~~~~~l~~ 312 (538)
++..|-.++++++.+.+.+..+..
T Consensus 97 lR~~pd~i~igEir~~ea~~~~~a 120 (186)
T cd01130 97 LRMRPDRIIVGEVRGGEALDLLQA 120 (186)
T ss_pred hccCCCEEEEEccCcHHHHHHHHH
Confidence 777889999999988776654443
No 272
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.51 E-value=0.002 Score=54.57 Aligned_cols=22 Identities=50% Similarity=0.771 Sum_probs=20.6
Q ss_pred EEEeccCCCchhHHHHHHHHhh
Q 009306 214 LGIWGIGGIGKTTIAGAIFNKI 235 (538)
Q Consensus 214 v~I~G~~GiGKTtLa~~~~~~~ 235 (538)
|+|.|++|+||||+|+.+..++
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999985
No 273
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.50 E-value=0.0075 Score=53.70 Aligned_cols=119 Identities=16% Similarity=0.183 Sum_probs=59.9
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhhcCChHHHHHHHHHHHhcCCCCCCchhhcHHHHHHHh
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEETCRLGDLRQQLLSTLLNDGNVKNFLNTDLNFQSRRL 289 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~~l 289 (538)
....++|.|+.|.|||||.+.++..... ..+.+++.... .. ........+. .++.... -..-+...-.+.+.+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~~-~~G~v~~~g~~-~~-~~~~~~~~~~---~i~~~~q-LS~G~~qrl~laral 97 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLYKP-DSGEILVDGKE-VS-FASPRDARRA---GIAMVYQ-LSVGERQMVEIARAL 97 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC-CCeEEEECCEE-CC-cCCHHHHHhc---CeEEEEe-cCHHHHHHHHHHHHH
Confidence 3457999999999999999999875432 34445543210 00 0011111000 0110000 011122233344556
Q ss_pred cCCCeEEEEecCC---ChHHHHHHhcCcCCC-CCCCEEEEeccchhhhhh
Q 009306 290 TRKKVLIVFDDVD---HPRQIKILVGRLDLF-ASGSRIIITTRDRQVLAN 335 (538)
Q Consensus 290 ~~k~~LlVlDdv~---~~~~~~~l~~~l~~~-~~~~~iiiTtR~~~~~~~ 335 (538)
...+-++++|+.. +....+.+...+... ..+..||++|.+......
T Consensus 98 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~ 147 (163)
T cd03216 98 ARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFE 147 (163)
T ss_pred hcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 6778899999873 222222222222111 236678888888764443
No 274
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.50 E-value=0.0025 Score=66.63 Aligned_cols=51 Identities=24% Similarity=0.294 Sum_probs=41.9
Q ss_pred CCceeccchhHHHHHhhh----cCCCCceEEEEeccCCCchhHHHHHHHHhhccc
Q 009306 188 EDLVGVRLPMKEIESLLR----TGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRH 238 (538)
Q Consensus 188 ~~~vGR~~~l~~l~~~L~----~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 238 (538)
.+++|.+..++.+.+.|. ......+++.++||+|.||||||+.++..+...
T Consensus 76 ~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~~ 130 (644)
T PRK15455 76 EEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMERV 130 (644)
T ss_pred hcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHhC
Confidence 368999999999998883 233456899999999999999999999865443
No 275
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.50 E-value=0.015 Score=52.44 Aligned_cols=36 Identities=28% Similarity=0.213 Sum_probs=27.7
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhhccceeeEEEE
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFA 245 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 245 (538)
...+++|+|++|+||||+|+.++..+........++
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~i 38 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVL 38 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 345899999999999999999999875433334444
No 276
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.50 E-value=0.037 Score=56.25 Aligned_cols=25 Identities=28% Similarity=0.161 Sum_probs=22.3
Q ss_pred ceEEEEeccCCCchhHHHHHHHHhh
Q 009306 211 VYKLGIWGIGGIGKTTIAGAIFNKI 235 (538)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (538)
..+++|+|++|+||||++..++...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4679999999999999999999764
No 277
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.50 E-value=0.02 Score=51.03 Aligned_cols=58 Identities=12% Similarity=0.204 Sum_probs=37.1
Q ss_pred hcHHHHHHHhcCCCeEEEEec----CCChHHHHHHhcCcCCCCCCCEEEEeccchhhhhhcC
Q 009306 280 TDLNFQSRRLTRKKVLIVFDD----VDHPRQIKILVGRLDLFASGSRIIITTRDRQVLANCG 337 (538)
Q Consensus 280 ~~~~~l~~~l~~k~~LlVlDd----v~~~~~~~~l~~~l~~~~~~~~iiiTtR~~~~~~~~~ 337 (538)
+....+.+.+-++|-+++-|+ +|..-.++.+.-.-.....|..|++.|-+..+...+.
T Consensus 143 QQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 143 QQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred HHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhcc
Confidence 334455666778999999996 4444444333211111245889999999998877764
No 278
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=96.50 E-value=0.0077 Score=57.95 Aligned_cols=48 Identities=21% Similarity=0.214 Sum_probs=37.9
Q ss_pred HHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEe
Q 009306 199 EIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFAR 246 (538)
Q Consensus 199 ~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 246 (538)
.|..+|..+-+..+++=|+|+.|+||||+|.+++-........++|++
T Consensus 48 ~LD~~LGGGl~~g~ItEiyG~~gsGKT~lal~~~~~aq~~g~~a~fID 95 (279)
T COG0468 48 ALDEALGGGLPRGRITEIYGPESSGKTTLALQLVANAQKPGGKAAFID 95 (279)
T ss_pred hHHHHhcCCcccceEEEEecCCCcchhhHHHHHHHHhhcCCCeEEEEe
Confidence 344555555566788889999999999999999887666666788887
No 279
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.49 E-value=0.012 Score=53.11 Aligned_cols=116 Identities=16% Similarity=0.108 Sum_probs=58.8
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeeh--hhhhhcCChHHHHHHHHHHHhcCCCCCCchhhcHHHHHH
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNV--REAEETCRLGDLRQQLLSTLLNDGNVKNFLNTDLNFQSR 287 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~--~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~ 287 (538)
...+++|.|+.|.|||||++.++...... .+.+.+... .-..+... -..-+...-.+.+
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~-~G~i~~~g~~i~~~~q~~~------------------LSgGq~qrv~lar 84 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQLIPN-GDNDEWDGITPVYKPQYID------------------LSGGELQRVAIAA 84 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCCCCC-CcEEEECCEEEEEEcccCC------------------CCHHHHHHHHHHH
Confidence 34579999999999999999988754332 233333210 00000000 0111122233445
Q ss_pred HhcCCCeEEEEecCC---ChHHHHHHhcCcCCC-CC-CCEEEEeccchhhhhhcCCCeeEEcC
Q 009306 288 RLTRKKVLIVFDDVD---HPRQIKILVGRLDLF-AS-GSRIIITTRDRQVLANCGVDEVYQME 345 (538)
Q Consensus 288 ~l~~k~~LlVlDdv~---~~~~~~~l~~~l~~~-~~-~~~iiiTtR~~~~~~~~~~~~~~~l~ 345 (538)
.+..++-++++|+-. +....+.+...+... .. +..||++|.+......+. ++++.+.
T Consensus 85 al~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~-d~i~~l~ 146 (177)
T cd03222 85 ALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLS-DRIHVFE 146 (177)
T ss_pred HHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhC-CEEEEEc
Confidence 566788899999873 222222222111111 12 356778887765554321 3444443
No 280
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.48 E-value=0.022 Score=54.96 Aligned_cols=115 Identities=17% Similarity=0.148 Sum_probs=61.0
Q ss_pred ceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhhcCChHHHHHHHHHHHhcCC-----CCCCchhhcHHHH
Q 009306 211 VYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEETCRLGDLRQQLLSTLLNDG-----NVKNFLNTDLNFQ 285 (538)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~-----~~~~~~~~~~~~l 285 (538)
...++|.|++|.|||||.+.++..+... .+.+++... ..........+... ...+.... +....... ...+
T Consensus 111 ~~~~~i~g~~g~GKttl~~~l~~~~~~~-~G~i~~~g~-~v~~~d~~~ei~~~-~~~~~q~~~~~r~~v~~~~~k-~~~~ 186 (270)
T TIGR02858 111 VLNTLIISPPQCGKTTLLRDLARILSTG-ISQLGLRGK-KVGIVDERSEIAGC-VNGVPQHDVGIRTDVLDGCPK-AEGM 186 (270)
T ss_pred eeEEEEEcCCCCCHHHHHHHHhCccCCC-CceEEECCE-EeecchhHHHHHHH-hcccccccccccccccccchH-HHHH
Confidence 4679999999999999999999876543 223333210 00000001111111 00010000 00011111 1112
Q ss_pred HHHh-cCCCeEEEEecCCChHHHHHHhcCcCCCCCCCEEEEeccchhh
Q 009306 286 SRRL-TRKKVLIVFDDVDHPRQIKILVGRLDLFASGSRIIITTRDRQV 332 (538)
Q Consensus 286 ~~~l-~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~~~~iiiTtR~~~~ 332 (538)
...+ ...|-++++|++...+.+..+...+. .|..+|+||-+..+
T Consensus 187 ~~~i~~~~P~villDE~~~~e~~~~l~~~~~---~G~~vI~ttH~~~~ 231 (270)
T TIGR02858 187 MMLIRSMSPDVIVVDEIGREEDVEALLEALH---AGVSIIATAHGRDV 231 (270)
T ss_pred HHHHHhCCCCEEEEeCCCcHHHHHHHHHHHh---CCCEEEEEechhHH
Confidence 2222 35788999999987776766665542 47789999887654
No 281
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.47 E-value=0.0079 Score=54.09 Aligned_cols=34 Identities=21% Similarity=0.272 Sum_probs=26.1
Q ss_pred EEEEeccCCCchhHHHHHHHHhhccceeeEEEEe
Q 009306 213 KLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFAR 246 (538)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 246 (538)
++.++|++|+||||++..++..+...-..+..+.
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~ 35 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVA 35 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 5789999999999999999988766533334443
No 282
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.47 E-value=0.026 Score=59.76 Aligned_cols=176 Identities=18% Similarity=0.179 Sum_probs=95.8
Q ss_pred CCCCceeccchhHHHHHhh---hcC-------CCCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhhcC
Q 009306 186 ENEDLVGVRLPMKEIESLL---RTG-------STNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEETC 255 (538)
Q Consensus 186 ~~~~~vGR~~~l~~l~~~L---~~~-------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~ 255 (538)
...+.-|.+...+++.+.+ ... ..-++-+.++|++|.|||.||++++.+..-.|- +++ .
T Consensus 148 ~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf---~iS-G------- 216 (596)
T COG0465 148 TFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFF---SIS-G------- 216 (596)
T ss_pred ChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCce---ecc-c-------
Confidence 3467788887666666544 321 122556899999999999999999987543321 111 0
Q ss_pred ChHHHHHHHHHHHhcCCCCCCchhhcHHHHHHHhcCCCeEEEEecCCCh----------------HHHHHHhcCcCCCCC
Q 009306 256 RLGDLRQQLLSTLLNDGNVKNFLNTDLNFQSRRLTRKKVLIVFDDVDHP----------------RQIKILVGRLDLFAS 319 (538)
Q Consensus 256 ~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~----------------~~~~~l~~~l~~~~~ 319 (538)
.++.+.+ .+ ...........+..++.|++|++|.+|.. ..+..++..++.++.
T Consensus 217 --S~FVemf----VG-----vGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~ 285 (596)
T COG0465 217 --SDFVEMF----VG-----VGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGG 285 (596)
T ss_pred --hhhhhhh----cC-----CCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCC
Confidence 0000000 00 01111122233344567899999998632 245666666666664
Q ss_pred CCEEE-E-eccchhhh-----hhcCCCeeEEcCCCCHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhcCCcH
Q 009306 320 GSRII-I-TTRDRQVL-----ANCGVDEVYQMEELVHDDALRLFSRHAFGGDHPHESHTELACKTIKYARGVPL 386 (538)
Q Consensus 320 ~~~ii-i-TtR~~~~~-----~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PL 386 (538)
+.-|| + .|..++++ ..-+.++.+.++..+...-.+++.-++-....... -+ ...+++.+-|.-.
T Consensus 286 ~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~--Vd-l~~iAr~tpGfsG 356 (596)
T COG0465 286 NEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAED--VD-LKKIARGTPGFSG 356 (596)
T ss_pred CCceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCc--CC-HHHHhhhCCCccc
Confidence 33233 2 23333333 22235567778887877777888766632222211 11 2237777777653
No 283
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.47 E-value=0.022 Score=57.84 Aligned_cols=27 Identities=22% Similarity=0.214 Sum_probs=23.7
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhhc
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKIS 236 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (538)
..+++.++|+.|+||||.+..++..+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~ 199 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYG 199 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 357899999999999999999998765
No 284
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.47 E-value=0.0023 Score=58.79 Aligned_cols=26 Identities=35% Similarity=0.530 Sum_probs=23.4
Q ss_pred EEEEeccCCCchhHHHHHHHHhhccc
Q 009306 213 KLGIWGIGGIGKTTIAGAIFNKISRH 238 (538)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~~~~~ 238 (538)
+|+|.|++|+||||+|+.+...+...
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~ 26 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKR 26 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTC
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCcc
Confidence 58999999999999999999987644
No 285
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.47 E-value=0.038 Score=59.12 Aligned_cols=50 Identities=26% Similarity=0.333 Sum_probs=33.2
Q ss_pred CceeccchhHHHHHhhh----------cCCCCceEEEEeccCCCchhHHHHHHHHhhccc
Q 009306 189 DLVGVRLPMKEIESLLR----------TGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRH 238 (538)
Q Consensus 189 ~~vGR~~~l~~l~~~L~----------~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 238 (538)
++=|-+.-..+|.+-+. .+-....-|.++|++|.|||-||++++-+..-.
T Consensus 673 DVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~ 732 (953)
T KOG0736|consen 673 DVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLN 732 (953)
T ss_pred cccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceee
Confidence 34455555555554332 222223358999999999999999999876544
No 286
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.47 E-value=0.027 Score=56.72 Aligned_cols=29 Identities=21% Similarity=0.264 Sum_probs=24.6
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhhccc
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKISRH 238 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 238 (538)
...+++++|++|+||||++..++.+....
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~ 164 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMR 164 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 35689999999999999999999876544
No 287
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.46 E-value=0.012 Score=52.93 Aligned_cols=27 Identities=33% Similarity=0.406 Sum_probs=22.8
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhhc
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKIS 236 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (538)
...+++|.|+.|.|||||.+.++....
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~ 53 (173)
T cd03246 27 PGESLAIIGPSGSGKSTLARLILGLLR 53 (173)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccC
Confidence 345799999999999999999987543
No 288
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=96.46 E-value=0.19 Score=53.34 Aligned_cols=133 Identities=15% Similarity=0.209 Sum_probs=67.9
Q ss_pred ceEEEEeccCCCchhHHHHHHHHhhccc---------eeeEEEEeehhhhhhcCCh------------HHHHHHHHHHHh
Q 009306 211 VYKLGIWGIGGIGKTTIAGAIFNKISRH---------FSGSYFARNVREAEETCRL------------GDLRQQLLSTLL 269 (538)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~---------f~~~~~~~~~~~~~~~~~~------------~~l~~~l~~~l~ 269 (538)
...|+|+|+.|+|||||.+.+....... -...+|-...........+ ..-.+.++..++
T Consensus 348 g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~ 427 (530)
T COG0488 348 GDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFG 427 (530)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcC
Confidence 3459999999999999999996643322 1111221111010000011 223333333333
Q ss_pred cCCCCC-Cc------hhhcHHHHHHHhcCCCeEEEEecCCC---hHHHHHHhcCcCCCCCCCEEEEeccchhhhhhcCCC
Q 009306 270 NDGNVK-NF------LNTDLNFQSRRLTRKKVLIVFDDVDH---PRQIKILVGRLDLFASGSRIIITTRDRQVLANCGVD 339 (538)
Q Consensus 270 ~~~~~~-~~------~~~~~~~l~~~l~~k~~LlVlDdv~~---~~~~~~l~~~l~~~~~~~~iiiTtR~~~~~~~~~~~ 339 (538)
-..+.. .. -+...-.+...+-.++=++|||+--+ .+.++.+...+.. -.+.||+.|-++..+..+. .
T Consensus 428 F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~--f~Gtvl~VSHDr~Fl~~va-~ 504 (530)
T COG0488 428 FTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLD--FEGTVLLVSHDRYFLDRVA-T 504 (530)
T ss_pred CChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHh--CCCeEEEEeCCHHHHHhhc-c
Confidence 221111 11 11222334455567888999997632 2334444333332 2345888899998877764 4
Q ss_pred eeEEcCC
Q 009306 340 EVYQMEE 346 (538)
Q Consensus 340 ~~~~l~~ 346 (538)
+++.+.+
T Consensus 505 ~i~~~~~ 511 (530)
T COG0488 505 RIWLVED 511 (530)
T ss_pred eEEEEcC
Confidence 5666654
No 289
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.46 E-value=0.0099 Score=53.55 Aligned_cols=23 Identities=35% Similarity=0.543 Sum_probs=20.8
Q ss_pred EEEEeccCCCchhHHHHHHHHhh
Q 009306 213 KLGIWGIGGIGKTTIAGAIFNKI 235 (538)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~~ 235 (538)
.|.|.|++|.||||+|+.+++++
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999999984
No 290
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=96.45 E-value=0.06 Score=50.17 Aligned_cols=147 Identities=20% Similarity=0.298 Sum_probs=77.4
Q ss_pred CCceeccchhHHHHHhhhc-----------CCCCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhhcCC
Q 009306 188 EDLVGVRLPMKEIESLLRT-----------GSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEETCR 256 (538)
Q Consensus 188 ~~~vGR~~~l~~l~~~L~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 256 (538)
.++=|-+.++++|.+.+-- +-...+-+..+||+|.|||-+|++.+.+....|- . -.+
T Consensus 171 sDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFL-----K-------LAg 238 (424)
T KOG0652|consen 171 SDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFL-----K-------LAG 238 (424)
T ss_pred cccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHH-----H-------hcc
Confidence 3445666666666554311 1123455889999999999999998877544331 1 000
Q ss_pred hHHHHHHHHHHHhcCCCCCCchhhcHHHHHHH----hcCCCeEEEEecCCCh----------------HHHHHHhcCcCC
Q 009306 257 LGDLRQQLLSTLLNDGNVKNFLNTDLNFQSRR----LTRKKVLIVFDDVDHP----------------RQIKILVGRLDL 316 (538)
Q Consensus 257 ~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~----------------~~~~~l~~~l~~ 316 (538)
+ .+.+.+ +.+....++.. -...|.+|.+|+++.. ...-.++..+..
T Consensus 239 P-QLVQMf-------------IGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDG 304 (424)
T KOG0652|consen 239 P-QLVQMF-------------IGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDG 304 (424)
T ss_pred h-HHHhhh-------------hcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcC
Confidence 0 111111 11111112211 1357899999988531 113344555555
Q ss_pred CCCC--CEEEEeccchhh-----hhhcCCCeeEEcCCCCHHHHHHHHHhhh
Q 009306 317 FASG--SRIIITTRDRQV-----LANCGVDEVYQMEELVHDDALRLFSRHA 360 (538)
Q Consensus 317 ~~~~--~~iiiTtR~~~~-----~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 360 (538)
|.+. .+||..|..-.+ +.+-.-++-++++--+.+.-.++++-+.
T Consensus 305 Fss~~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHs 355 (424)
T KOG0652|consen 305 FSSDDRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHS 355 (424)
T ss_pred CCCccceEEEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhh
Confidence 5554 456655543322 2333345567776666666566666555
No 291
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.44 E-value=0.02 Score=55.62 Aligned_cols=38 Identities=13% Similarity=-0.090 Sum_probs=30.0
Q ss_pred CCceEEEEeccCCCchhHHHHHHHHhhccc-eeeEEEEe
Q 009306 209 TNVYKLGIWGIGGIGKTTIAGAIFNKISRH-FSGSYFAR 246 (538)
Q Consensus 209 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~ 246 (538)
....++.|.|++|+||||++.+++...... ...++|+.
T Consensus 28 ~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS 66 (271)
T cd01122 28 RKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTIS 66 (271)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEE
Confidence 345678999999999999999998876544 45666765
No 292
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=96.44 E-value=0.41 Score=46.95 Aligned_cols=165 Identities=9% Similarity=0.087 Sum_probs=91.6
Q ss_pred HHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhccc---------ee-eEEEEeehhhhhhcCChHHHHHHHHHH
Q 009306 198 KEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRH---------FS-GSYFARNVREAEETCRLGDLRQQLLST 267 (538)
Q Consensus 198 ~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~---------f~-~~~~~~~~~~~~~~~~~~~l~~~l~~~ 267 (538)
+.+...+..+ .-.++..++|+.|.||+++|..++..+-.. .+ ...++. .. ........+ +.+...
T Consensus 6 ~~l~~~i~~~-~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d-~~--g~~i~vd~I-r~l~~~ 80 (299)
T PRK07132 6 KFLDNSATQN-KISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFD-IF--DKDLSKSEF-LSAINK 80 (299)
T ss_pred HHHHHHHHhC-CCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEec-cC--CCcCCHHHH-HHHHHH
Confidence 3444444432 235678899999999999999999876211 11 111111 00 001111111 112221
Q ss_pred HhcCCCCCCchhhcHHHHHHHhcCCCeEEEEecCCCh--HHHHHHhcCcCCCCCCCEEEEeccc-hhhhhhc-CCCeeEE
Q 009306 268 LLNDGNVKNFLNTDLNFQSRRLTRKKVLIVFDDVDHP--RQIKILVGRLDLFASGSRIIITTRD-RQVLANC-GVDEVYQ 343 (538)
Q Consensus 268 l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~iiiTtR~-~~~~~~~-~~~~~~~ 343 (538)
+.... .-.+.+=++|+|+++.. .....++..+...++++.+|++|.+ ..+++.+ .....++
T Consensus 81 ~~~~~---------------~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~ 145 (299)
T PRK07132 81 LYFSS---------------FVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFN 145 (299)
T ss_pred hccCC---------------cccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEE
Confidence 11100 00135668899998754 4466777777665677777765544 4444442 3457899
Q ss_pred cCCCCHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhcCCcHHHHH
Q 009306 344 MEELVHDDALRLFSRHAFGGDHPHESHTELACKTIKYARGVPLALEV 390 (538)
Q Consensus 344 l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~ 390 (538)
+.+++.++..+.+.... ..++.+..++..++|.=-|+..
T Consensus 146 f~~l~~~~l~~~l~~~~--------~~~~~a~~~a~~~~~~~~a~~~ 184 (299)
T PRK07132 146 VKEPDQQKILAKLLSKN--------KEKEYNWFYAYIFSNFEQAEKY 184 (299)
T ss_pred CCCCCHHHHHHHHHHcC--------CChhHHHHHHHHcCCHHHHHHH
Confidence 99999999998877541 1234455666666662234443
No 293
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.42 E-value=0.012 Score=58.60 Aligned_cols=49 Identities=22% Similarity=0.262 Sum_probs=36.0
Q ss_pred HHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhccc------eeeEEEEe
Q 009306 198 KEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRH------FSGSYFAR 246 (538)
Q Consensus 198 ~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~------f~~~~~~~ 246 (538)
..+..+|..+-....++-|+|++|+|||+++.+++...... -..++|+.
T Consensus 89 ~~lD~~l~GGi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~ 143 (317)
T PRK04301 89 KELDELLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYID 143 (317)
T ss_pred HHHHHHhcCCccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEe
Confidence 45566666555567789999999999999999998764322 13577776
No 294
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=96.41 E-value=0.0059 Score=61.47 Aligned_cols=95 Identities=17% Similarity=0.156 Sum_probs=54.2
Q ss_pred ceEEEEeccCCCchhHHHHHHHHhhcccee---eEEEEeehhhhhhcCChHHHHHHHHHHHhcCCCCCCchhhcHHHHHH
Q 009306 211 VYKLGIWGIGGIGKTTIAGAIFNKISRHFS---GSYFARNVREAEETCRLGDLRQQLLSTLLNDGNVKNFLNTDLNFQSR 287 (538)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~---~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~ 287 (538)
...+.|+|+.|+||||+++.++..+....+ .++.+.+..+ ..+..+.. ....+. ..............++.
T Consensus 134 ~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE----~~~~~~~~-~~~~v~-Q~~v~~~~~~~~~~l~~ 207 (358)
T TIGR02524 134 EGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIE----FVYDEIET-ISASVC-QSEIPRHLNNFAAGVRN 207 (358)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCce----Eecccccc-ccceee-eeeccccccCHHHHHHH
Confidence 457999999999999999999987643322 2333322111 11111000 000000 01111122334566777
Q ss_pred HhcCCCeEEEEecCCChHHHHHHh
Q 009306 288 RLTRKKVLIVFDDVDHPRQIKILV 311 (538)
Q Consensus 288 ~l~~k~~LlVlDdv~~~~~~~~l~ 311 (538)
.++..|-.+++.++.+.+.....+
T Consensus 208 aLR~~Pd~i~vGEiRd~et~~~al 231 (358)
T TIGR02524 208 ALRRKPHAILVGEARDAETISAAL 231 (358)
T ss_pred HhccCCCEEeeeeeCCHHHHHHHH
Confidence 888899999999998888775444
No 295
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=96.41 E-value=0.0043 Score=68.76 Aligned_cols=24 Identities=25% Similarity=0.018 Sum_probs=21.4
Q ss_pred ceEEEEeccCCCchhHHHHHHHHh
Q 009306 211 VYKLGIWGIGGIGKTTIAGAIFNK 234 (538)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~ 234 (538)
.+.++|+|+.|.||||+.+.+.-.
T Consensus 322 ~~~liItGpNg~GKSTlLK~i~~~ 345 (771)
T TIGR01069 322 KRVLAITGPNTGGKTVTLKTLGLL 345 (771)
T ss_pred ceEEEEECCCCCCchHHHHHHHHH
Confidence 468999999999999999988764
No 296
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.40 E-value=0.037 Score=57.14 Aligned_cols=36 Identities=17% Similarity=0.121 Sum_probs=27.2
Q ss_pred ceEEEEeccCCCchhHHHHHHHHhhc--cceeeEEEEe
Q 009306 211 VYKLGIWGIGGIGKTTIAGAIFNKIS--RHFSGSYFAR 246 (538)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~--~~f~~~~~~~ 246 (538)
.+++.++|++|+||||++..++..+. .....+.++.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~ 258 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALIT 258 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 45899999999999999999988765 2333445544
No 297
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.39 E-value=0.08 Score=54.28 Aligned_cols=36 Identities=19% Similarity=0.141 Sum_probs=27.7
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhhccceeeEEEE
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFA 245 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 245 (538)
...++.++|++|+||||++..++..++.+...+..+
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV 134 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLV 134 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE
Confidence 357899999999999999999998766543333433
No 298
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.38 E-value=0.015 Score=57.77 Aligned_cols=49 Identities=22% Similarity=0.262 Sum_probs=35.8
Q ss_pred HHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhccc------eeeEEEEe
Q 009306 198 KEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRH------FSGSYFAR 246 (538)
Q Consensus 198 ~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~------f~~~~~~~ 246 (538)
..+..+|..+-....++-|+|++|+|||+|+.+++...... -..++|+.
T Consensus 82 ~~lD~~l~GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~ 136 (310)
T TIGR02236 82 KELDELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYID 136 (310)
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEE
Confidence 44556666555567888999999999999999998764321 12677776
No 299
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.37 E-value=0.03 Score=51.96 Aligned_cols=63 Identities=22% Similarity=0.349 Sum_probs=39.0
Q ss_pred hcHHHHHHHhcCCCeEEEEecC----CCh--HHHHHHhcCcCCCCCCCEEEEeccchhhhhhcCCCeeEEcC
Q 009306 280 TDLNFQSRRLTRKKVLIVFDDV----DHP--RQIKILVGRLDLFASGSRIIITTRDRQVLANCGVDEVYQME 345 (538)
Q Consensus 280 ~~~~~l~~~l~~k~~LlVlDdv----~~~--~~~~~l~~~l~~~~~~~~iiiTtR~~~~~~~~~~~~~~~l~ 345 (538)
+..-.+.+.+...|-+|+.|+- |.. ..+-.++..+.. ..|..||+.|-+..++..+ ++++.+.
T Consensus 148 qQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~-~~g~tii~VTHd~~lA~~~--dr~i~l~ 216 (226)
T COG1136 148 QQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNK-ERGKTIIMVTHDPELAKYA--DRVIELK 216 (226)
T ss_pred HHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHH-hcCCEEEEEcCCHHHHHhC--CEEEEEe
Confidence 3345566778889999999975 322 223233322211 2367899999999888865 3555543
No 300
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=96.37 E-value=0.0066 Score=55.74 Aligned_cols=30 Identities=33% Similarity=0.463 Sum_probs=26.6
Q ss_pred CCceEEEEeccCCCchhHHHHHHHHhhccc
Q 009306 209 TNVYKLGIWGIGGIGKTTIAGAIFNKISRH 238 (538)
Q Consensus 209 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 238 (538)
..+.+|+|.|.+|+||||+|+.++..+...
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~ 35 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVE 35 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCcC
Confidence 346789999999999999999999988765
No 301
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.37 E-value=0.004 Score=58.09 Aligned_cols=23 Identities=17% Similarity=0.047 Sum_probs=20.8
Q ss_pred ceEEEEeccCCCchhHHHHHHHH
Q 009306 211 VYKLGIWGIGGIGKTTIAGAIFN 233 (538)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~ 233 (538)
.+.+.|+|+.|.|||||.+.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 47899999999999999999874
No 302
>COG3910 Predicted ATPase [General function prediction only]
Probab=96.37 E-value=0.027 Score=49.99 Aligned_cols=24 Identities=33% Similarity=0.234 Sum_probs=21.4
Q ss_pred CceEEEEeccCCCchhHHHHHHHH
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFN 233 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~ 233 (538)
..++..|+|..|+|||||...++-
T Consensus 36 ~apIT~i~GENGsGKSTLLEaiA~ 59 (233)
T COG3910 36 RAPITFITGENGSGKSTLLEAIAA 59 (233)
T ss_pred cCceEEEEcCCCccHHHHHHHHHh
Confidence 466889999999999999999876
No 303
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=96.37 E-value=0.0089 Score=60.17 Aligned_cols=100 Identities=19% Similarity=0.265 Sum_probs=56.1
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhhcCChHHHHHHHHHHHhcCCCCCCchhhcHHHHHHHh
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEETCRLGDLRQQLLSTLLNDGNVKNFLNTDLNFQSRRL 289 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~~l 289 (538)
..+-+-|||..|.|||.|.-.+|+.+...-... ..+..++..+-+.+..... ....+..+.+.+
T Consensus 61 ~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R------------~HFh~Fm~~vh~~l~~~~~----~~~~l~~va~~l 124 (362)
T PF03969_consen 61 PPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRR------------VHFHEFMLDVHSRLHQLRG----QDDPLPQVADEL 124 (362)
T ss_pred CCceEEEECCCCCchhHHHHHHHHhCCcccccc------------ccccHHHHHHHHHHHHHhC----CCccHHHHHHHH
Confidence 356689999999999999999998765421111 1222333333333322211 122234455566
Q ss_pred cCCCeEEEEecC--CChH---HHHHHhcCcCCCCCCCEEEEec
Q 009306 290 TRKKVLIVFDDV--DHPR---QIKILVGRLDLFASGSRIIITT 327 (538)
Q Consensus 290 ~~k~~LlVlDdv--~~~~---~~~~l~~~l~~~~~~~~iiiTt 327 (538)
.++..||.||++ .+.. .+..++..+. ..|..+|.||
T Consensus 125 ~~~~~lLcfDEF~V~DiaDAmil~rLf~~l~--~~gvvlVaTS 165 (362)
T PF03969_consen 125 AKESRLLCFDEFQVTDIADAMILKRLFEALF--KRGVVLVATS 165 (362)
T ss_pred HhcCCEEEEeeeeccchhHHHHHHHHHHHHH--HCCCEEEecC
Confidence 677779999987 3332 3444444432 3455555544
No 304
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.36 E-value=0.0054 Score=59.17 Aligned_cols=35 Identities=17% Similarity=0.067 Sum_probs=23.5
Q ss_pred eEEEEeccCCCchhHHHHHHHHhhccceeeEEEEe
Q 009306 212 YKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFAR 246 (538)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 246 (538)
++|.|+|.||+||||+|+++...+...-..+.++.
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~ 36 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIIS 36 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEc
Confidence 47899999999999999999997765433344443
No 305
>PRK13531 regulatory ATPase RavA; Provisional
Probab=96.34 E-value=0.0031 Score=64.93 Aligned_cols=46 Identities=17% Similarity=0.141 Sum_probs=39.0
Q ss_pred CCceeccchhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhcc
Q 009306 188 EDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISR 237 (538)
Q Consensus 188 ~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 237 (538)
..++||+..++.+...+..+.. +.|.|++|+|||+||+.++.....
T Consensus 20 ~~i~gre~vI~lll~aalag~h----VLL~GpPGTGKT~LAraLa~~~~~ 65 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSGES----VFLLGPPGIAKSLIARRLKFAFQN 65 (498)
T ss_pred hhccCcHHHHHHHHHHHccCCC----EEEECCCChhHHHHHHHHHHHhcc
Confidence 5699999999999887765433 899999999999999999987543
No 306
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=96.34 E-value=0.0019 Score=58.93 Aligned_cols=21 Identities=24% Similarity=-0.027 Sum_probs=18.7
Q ss_pred EEEEeccCCCchhHHHHHHHH
Q 009306 213 KLGIWGIGGIGKTTIAGAIFN 233 (538)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~ 233 (538)
++.|+|+.|.||||+.+.+.-
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHH
Confidence 368999999999999999884
No 307
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.34 E-value=0.003 Score=47.20 Aligned_cols=23 Identities=30% Similarity=0.472 Sum_probs=21.0
Q ss_pred EEEEeccCCCchhHHHHHHHHhh
Q 009306 213 KLGIWGIGGIGKTTIAGAIFNKI 235 (538)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~~ 235 (538)
+++|.|.+|+||||+++.+.+.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999999886
No 308
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.34 E-value=0.014 Score=57.69 Aligned_cols=50 Identities=12% Similarity=0.166 Sum_probs=35.8
Q ss_pred hHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhh--c----cceeeEEEEe
Q 009306 197 MKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKI--S----RHFSGSYFAR 246 (538)
Q Consensus 197 l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~--~----~~f~~~~~~~ 246 (538)
...|..+|..+-....++-|+|++|+|||+|+.+++-.. . ..-..++|++
T Consensus 82 ~~~LD~lLgGGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYId 137 (313)
T TIGR02238 82 SQALDGILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYID 137 (313)
T ss_pred CHHHHHHhCCCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEE
Confidence 345666777655667889999999999999999887532 1 1123567776
No 309
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=96.32 E-value=0.003 Score=61.38 Aligned_cols=121 Identities=17% Similarity=0.172 Sum_probs=67.3
Q ss_pred CceeccchhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhhcCChHHHHHHHHHHH
Q 009306 189 DLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEETCRLGDLRQQLLSTL 268 (538)
Q Consensus 189 ~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l 268 (538)
.+.-.....+.+.++|...-.....+.|.|+.|+||||++..+...+...-...+-+.+..+....
T Consensus 105 ~l~~~~~~~~~~~~~l~~~v~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~l~-------------- 170 (270)
T PF00437_consen 105 DLGESGSIPEEIAEFLRSAVRGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELRLP-------------- 170 (270)
T ss_dssp CCCHTHHCHHHHHHHHHHCHHTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S--S--------------
T ss_pred hccCchhhHHHHHHHHhhccccceEEEEECCCccccchHHHHHhhhccccccceEEeccccceeec--------------
Confidence 333333344555556654322456799999999999999999998776652233333322111100
Q ss_pred hcCCCCC----CchhhcHHHHHHHhcCCCeEEEEecCCChHHHHHHhcCcCCCCCCCEE-EEecc
Q 009306 269 LNDGNVK----NFLNTDLNFQSRRLTRKKVLIVFDDVDHPRQIKILVGRLDLFASGSRI-IITTR 328 (538)
Q Consensus 269 ~~~~~~~----~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~~~~i-iiTtR 328 (538)
...... .........+...|+..+=.|+++++.+.+....+... ..|..+ +-|..
T Consensus 171 -~~~~~~~~~~~~~~~~~~~l~~~LR~~pD~iiigEiR~~e~~~~~~a~----~tGh~~~~tT~H 230 (270)
T PF00437_consen 171 -GPNQIQIQTRRDEISYEDLLKSALRQDPDVIIIGEIRDPEAAEAIQAA----NTGHLGSLTTLH 230 (270)
T ss_dssp -CSSEEEEEEETTTBSHHHHHHHHTTS--SEEEESCE-SCHHHHHHHHH----HTT-EEEEEEEE
T ss_pred -ccceEEEEeecCcccHHHHHHHHhcCCCCcccccccCCHhHHHHHHhh----ccCCceeeeeee
Confidence 000000 12334456677778888999999999888777764433 346666 44443
No 310
>PF10137 TIR-like: Predicted nucleotide-binding protein containing TIR-like domain; InterPro: IPR019302 This entry represents a TIR-like domain found in a family of prokaryotic predicted nucleotide-binding proteins. Their exact function has not, as yet, been defined.
Probab=96.32 E-value=0.011 Score=49.51 Aligned_cols=60 Identities=22% Similarity=0.351 Sum_probs=52.5
Q ss_pred cEEEcCcccccccchHHHHHHHHhhCCCeeEeeC-CCCCCCcchHHHHHHHHhcceEEEEeccC
Q 009306 19 DVFLSFGGEDTRESFTSHLYSALSRETVETFIDD-DLRRGDEISQSLLDAIEASSISIIIFSES 81 (538)
Q Consensus 19 dvFiSy~~~D~~~~~~~~l~~~l~~~g~~~~~d~-~~~~g~~~~~~i~~~i~~s~~~i~v~S~~ 81 (538)
.|||.|+ +| ..++..+...|+..|+.+.+-. ....|..+.+.+.+.+.+|+..|++++|+
T Consensus 1 kVFIvhg-~~--~~~~~~v~~~L~~~~~ep~i~~~~~~~g~tiie~le~~~~~~~faIvl~TpD 61 (125)
T PF10137_consen 1 KVFIVHG-RD--LAAAEAVERFLEKLGLEPIIWHEQPNLGQTIIEKLEEAADSVDFAIVLFTPD 61 (125)
T ss_pred CEEEEeC-CC--HHHHHHHHHHHHhCCCceEEeecCCCCCCchHHHHHHHhccCCEEEEEEccc
Confidence 4899997 66 5789999999998888877655 66889999999999999999999999994
No 311
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.32 E-value=0.033 Score=52.02 Aligned_cols=48 Identities=21% Similarity=0.333 Sum_probs=33.4
Q ss_pred ceeccchhHHHHHhhhc-----------CCCCceEEEEeccCCCchhHHHHHHHHhhcc
Q 009306 190 LVGVRLPMKEIESLLRT-----------GSTNVYKLGIWGIGGIGKTTIAGAIFNKISR 237 (538)
Q Consensus 190 ~vGR~~~l~~l~~~L~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 237 (538)
.=|-..++++|.+.... +-+..+-|.++|++|.|||-+|++++++...
T Consensus 179 vggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtda 237 (435)
T KOG0729|consen 179 VGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDA 237 (435)
T ss_pred ccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCc
Confidence 34555666666554321 2234556899999999999999999998643
No 312
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.30 E-value=0.016 Score=53.82 Aligned_cols=26 Identities=31% Similarity=0.252 Sum_probs=22.5
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhh
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKI 235 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (538)
...+++|.|+.|.|||||++.++...
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (207)
T PRK13539 27 AGEALVLTGPNGSGKTTLLRLIAGLL 52 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45579999999999999999998753
No 313
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.29 E-value=0.034 Score=55.62 Aligned_cols=37 Identities=22% Similarity=0.195 Sum_probs=28.6
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEe
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFAR 246 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 246 (538)
..++++|+|+.|+||||++..++..+..+...+.++.
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lIt 241 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFIT 241 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 4678999999999999999999987654433445554
No 314
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=96.28 E-value=0.0082 Score=59.46 Aligned_cols=94 Identities=16% Similarity=0.130 Sum_probs=51.9
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhhcC-ChHHHHHHHHHHHhcCCCCCCchhhcHHHHHHH
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEETC-RLGDLRQQLLSTLLNDGNVKNFLNTDLNFQSRR 288 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~-~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~~ 288 (538)
....++|+|+.|+|||||++.+...+.... ..+.+.+..+..... ....+ ...........-...+.+...
T Consensus 143 ~~~~ili~G~tGsGKTTll~al~~~~~~~~-~iv~ied~~El~~~~~~~~~l-------~~~~~~~~~~~~~~~~~l~~~ 214 (308)
T TIGR02788 143 SRKNIIISGGTGSGKTTFLKSLVDEIPKDE-RIITIEDTREIFLPHPNYVHL-------FYSKGGQGLAKVTPKDLLQSC 214 (308)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHccCCccc-cEEEEcCccccCCCCCCEEEE-------EecCCCCCcCccCHHHHHHHH
Confidence 345699999999999999999998765432 233333222211110 00000 000000001111234456667
Q ss_pred hcCCCeEEEEecCCChHHHHHHh
Q 009306 289 LTRKKVLIVFDDVDHPRQIKILV 311 (538)
Q Consensus 289 l~~k~~LlVlDdv~~~~~~~~l~ 311 (538)
++..+-.|++|++...+.++.+.
T Consensus 215 Lr~~pd~ii~gE~r~~e~~~~l~ 237 (308)
T TIGR02788 215 LRMRPDRIILGELRGDEAFDFIR 237 (308)
T ss_pred hcCCCCeEEEeccCCHHHHHHHH
Confidence 78888999999998876655443
No 315
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.28 E-value=0.019 Score=55.97 Aligned_cols=37 Identities=16% Similarity=0.125 Sum_probs=28.2
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhhccc-e-eeEEEEe
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKISRH-F-SGSYFAR 246 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f-~~~~~~~ 246 (538)
..++++|+|++|+||||++..++..+... . ..+.++.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~ 231 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALIT 231 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 35689999999999999999999877644 2 3344444
No 316
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=96.27 E-value=0.0092 Score=60.83 Aligned_cols=23 Identities=39% Similarity=0.518 Sum_probs=20.4
Q ss_pred ceEEEEeccCCCchhHHHHHHHH
Q 009306 211 VYKLGIWGIGGIGKTTIAGAIFN 233 (538)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~ 233 (538)
...++|.|++|+||||||+.+.-
T Consensus 362 G~~lgIIGPSgSGKSTLaR~lvG 384 (580)
T COG4618 362 GEALGIIGPSGSGKSTLARLLVG 384 (580)
T ss_pred CceEEEECCCCccHHHHHHHHHc
Confidence 34699999999999999999875
No 317
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=96.27 E-value=0.0023 Score=52.50 Aligned_cols=25 Identities=36% Similarity=0.654 Sum_probs=21.6
Q ss_pred EEEeccCCCchhHHHHHHHHhhccc
Q 009306 214 LGIWGIGGIGKTTIAGAIFNKISRH 238 (538)
Q Consensus 214 v~I~G~~GiGKTtLa~~~~~~~~~~ 238 (538)
|.|+|++|+|||+||..++..+...
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~ 25 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKH 25 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHH
Confidence 4689999999999999999876654
No 318
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=96.27 E-value=0.0035 Score=52.39 Aligned_cols=31 Identities=32% Similarity=0.499 Sum_probs=21.7
Q ss_pred EEEeccCCCchhHHHHHHHHhhccceeeEEE
Q 009306 214 LGIWGIGGIGKTTIAGAIFNKISRHFSGSYF 244 (538)
Q Consensus 214 v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~ 244 (538)
+.|+|.+|+|||++|+.++..+...|..+-+
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~f~RIq~ 32 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLSFKRIQF 32 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--EEEEE-
T ss_pred EeeECCCccHHHHHHHHHHHHcCCceeEEEe
Confidence 6799999999999999999998888765443
No 319
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.27 E-value=0.024 Score=50.95 Aligned_cols=35 Identities=29% Similarity=0.320 Sum_probs=25.9
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhhccceeeEEEE
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFA 245 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 245 (538)
....++|.|+.|.|||||++.++..... ..+.+++
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~-~~G~i~~ 59 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLIKIILGLLKP-DSGEIKV 59 (173)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCC-CCeEEEE
Confidence 3457999999999999999998875432 2344444
No 320
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=96.26 E-value=0.0059 Score=53.56 Aligned_cols=37 Identities=27% Similarity=0.266 Sum_probs=30.7
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEe
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFAR 246 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 246 (538)
...++.++|.+|.||||||.++..++......++.++
T Consensus 22 ~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LD 58 (197)
T COG0529 22 KGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLD 58 (197)
T ss_pred CCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEec
Confidence 4568999999999999999999999877765555554
No 321
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.25 E-value=0.0061 Score=58.75 Aligned_cols=41 Identities=15% Similarity=0.164 Sum_probs=32.1
Q ss_pred cCCCCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEe
Q 009306 206 TGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFAR 246 (538)
Q Consensus 206 ~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 246 (538)
.+-+...++.|+|++|+|||++|.+++.....+-..++|+.
T Consensus 31 GGip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis 71 (259)
T TIGR03878 31 GGIPAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVT 71 (259)
T ss_pred CCeECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEE
Confidence 34455678999999999999999999876555555677776
No 322
>PRK08233 hypothetical protein; Provisional
Probab=96.25 E-value=0.0037 Score=56.65 Aligned_cols=26 Identities=27% Similarity=0.369 Sum_probs=23.2
Q ss_pred ceEEEEeccCCCchhHHHHHHHHhhc
Q 009306 211 VYKLGIWGIGGIGKTTIAGAIFNKIS 236 (538)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (538)
..+|+|.|++|+||||||+.++..+.
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 36899999999999999999998764
No 323
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=96.25 E-value=0.032 Score=48.87 Aligned_cols=88 Identities=20% Similarity=0.150 Sum_probs=45.1
Q ss_pred EeccCCCchhHHHHHHHHhhccceeeEEEEee---hhhhhhcCChHHHHHHHHHHHhcCCCCCCchhhcHHHHHHHhcC-
Q 009306 216 IWGIGGIGKTTIAGAIFNKISRHFSGSYFARN---VREAEETCRLGDLRQQLLSTLLNDGNVKNFLNTDLNFQSRRLTR- 291 (538)
Q Consensus 216 I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~---~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~- 291 (538)
|.|+||+||||+|+.++.++. ...++. ++....... .+...+-..+..... ...+-....+...+..
T Consensus 1 i~G~PgsGK~t~~~~la~~~~-----~~~is~~~llr~~~~~~s--~~g~~i~~~l~~g~~--vp~~~v~~ll~~~l~~~ 71 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYG-----LVHISVGDLLREEIKSDS--ELGKQIQEYLDNGEL--VPDELVIELLKERLEQP 71 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHT-----SEEEEHHHHHHHHHHTTS--HHHHHHHHHHHTTSS----HHHHHHHHHHHHHSG
T ss_pred CcCCCCCChHHHHHHHHHhcC-----cceechHHHHHHHHhhhh--HHHHHHHHHHHhhcc--chHHHHHHHHHHHHhhh
Confidence 689999999999999998752 223331 111111111 111222222221111 2233344555555533
Q ss_pred -CCeEEEEecC-CChHHHHHHhc
Q 009306 292 -KKVLIVFDDV-DHPRQIKILVG 312 (538)
Q Consensus 292 -k~~LlVlDdv-~~~~~~~~l~~ 312 (538)
...-+|||++ .+..+.+.+..
T Consensus 72 ~~~~g~ildGfPrt~~Qa~~l~~ 94 (151)
T PF00406_consen 72 PCNRGFILDGFPRTLEQAEALEE 94 (151)
T ss_dssp GTTTEEEEESB-SSHHHHHHHHH
T ss_pred cccceeeeeeccccHHHHHHHHH
Confidence 2456889999 45666666654
No 324
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=96.24 E-value=0.011 Score=57.07 Aligned_cols=47 Identities=21% Similarity=0.194 Sum_probs=39.3
Q ss_pred HHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEe
Q 009306 200 IESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFAR 246 (538)
Q Consensus 200 l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 246 (538)
|.+.|..+-+..+++.|+|.+|+|||+++.++..+.......++|+.
T Consensus 12 lD~~l~GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs 58 (260)
T COG0467 12 LDEILGGGLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVS 58 (260)
T ss_pred hHHHhcCCCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEE
Confidence 44455555567889999999999999999999999888888888876
No 325
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=96.23 E-value=0.032 Score=53.15 Aligned_cols=40 Identities=23% Similarity=0.116 Sum_probs=30.9
Q ss_pred CCCCceEEEEeccCCCchhHHHHHHHHhhccc-eeeEEEEe
Q 009306 207 GSTNVYKLGIWGIGGIGKTTIAGAIFNKISRH-FSGSYFAR 246 (538)
Q Consensus 207 ~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~ 246 (538)
+-....++.|.|.+|.|||+++.+++...... -..++|++
T Consensus 9 Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s 49 (242)
T cd00984 9 GLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFS 49 (242)
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEe
Confidence 44456789999999999999999998876554 44566655
No 326
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=96.22 E-value=0.0082 Score=60.58 Aligned_cols=93 Identities=17% Similarity=0.101 Sum_probs=54.5
Q ss_pred eEEEEeccCCCchhHHHHHHHHhhcccee--eEEEEeehhhhhhcCChHHHHHHHHHHHhcCCCCCCchhhcHHHHHHHh
Q 009306 212 YKLGIWGIGGIGKTTIAGAIFNKISRHFS--GSYFARNVREAEETCRLGDLRQQLLSTLLNDGNVKNFLNTDLNFQSRRL 289 (538)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~--~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~~l 289 (538)
..+.|+|+.|+||||+++.+...+....+ ..+-+.+..+... .....+.. ........+.......++..+
T Consensus 150 GlilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~-~~~~~~~~------~~q~evg~~~~~~~~~l~~aL 222 (372)
T TIGR02525 150 GLGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYIL-GSPDDLLP------PAQSQIGRDVDSFANGIRLAL 222 (372)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhcc-CCCceeec------ccccccCCCccCHHHHHHHhh
Confidence 36889999999999999999887654322 2333332211110 00000000 000111122234456777888
Q ss_pred cCCCeEEEEecCCChHHHHHHh
Q 009306 290 TRKKVLIVFDDVDHPRQIKILV 311 (538)
Q Consensus 290 ~~k~~LlVlDdv~~~~~~~~l~ 311 (538)
+..|=.|+++++.+.+..+..+
T Consensus 223 R~~PD~I~vGEiRd~et~~~al 244 (372)
T TIGR02525 223 RRAPKIIGVGEIRDLETFQAAV 244 (372)
T ss_pred ccCCCEEeeCCCCCHHHHHHHH
Confidence 8899999999999888776543
No 327
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=96.21 E-value=0.011 Score=60.64 Aligned_cols=26 Identities=23% Similarity=0.281 Sum_probs=22.5
Q ss_pred eEEEEeccCCCchhHHHHHHHHhhcc
Q 009306 212 YKLGIWGIGGIGKTTIAGAIFNKISR 237 (538)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~~~~ 237 (538)
..+.++|++|+|||+||+.++..+..
T Consensus 109 ~~iLl~Gp~GtGKT~lAr~lA~~l~~ 134 (412)
T PRK05342 109 SNILLIGPTGSGKTLLAQTLARILDV 134 (412)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 45899999999999999999987643
No 328
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.16 E-value=0.032 Score=48.77 Aligned_cols=23 Identities=26% Similarity=0.580 Sum_probs=20.4
Q ss_pred EEEEeccCCCchhHHHHHHHHhh
Q 009306 213 KLGIWGIGGIGKTTIAGAIFNKI 235 (538)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~~ 235 (538)
++.|+|++|+||||+|+.+....
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 37899999999999999998874
No 329
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.16 E-value=0.0049 Score=57.41 Aligned_cols=26 Identities=38% Similarity=0.624 Sum_probs=23.8
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhh
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKI 235 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (538)
...+|+|.|++|+|||||++.++..+
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 56789999999999999999999876
No 330
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=96.14 E-value=0.018 Score=61.49 Aligned_cols=53 Identities=15% Similarity=0.123 Sum_probs=40.2
Q ss_pred cchhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhccc-eeeEEEEe
Q 009306 194 RLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRH-FSGSYFAR 246 (538)
Q Consensus 194 ~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~ 246 (538)
..-+..|.++|..+-+...++.|.|.+|+|||+|+.+++.....+ -..+.|+.
T Consensus 14 ~TGI~~LD~~l~GG~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis 67 (509)
T PRK09302 14 PTGIEGFDDITHGGLPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVT 67 (509)
T ss_pred cCCchhHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEE
Confidence 334556667776666677899999999999999999998765555 45666765
No 331
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=96.13 E-value=0.091 Score=57.81 Aligned_cols=49 Identities=20% Similarity=0.307 Sum_probs=38.3
Q ss_pred CCCceeccchhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhh
Q 009306 187 NEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKI 235 (538)
Q Consensus 187 ~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (538)
.+.++|....++++.+.+..-......|.|+|.+|+||+++|+.+.+.-
T Consensus 324 ~~~l~g~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~s 372 (638)
T PRK11388 324 FDHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNES 372 (638)
T ss_pred ccceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHHhC
Confidence 4678999988888877665422333458999999999999999998754
No 332
>PTZ00301 uridine kinase; Provisional
Probab=96.13 E-value=0.0048 Score=57.20 Aligned_cols=28 Identities=29% Similarity=0.546 Sum_probs=23.8
Q ss_pred ceEEEEeccCCCchhHHHHHHHHhhccc
Q 009306 211 VYKLGIWGIGGIGKTTIAGAIFNKISRH 238 (538)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 238 (538)
..+|+|.|++|+||||||+.+..++...
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~~~ 30 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELMAH 30 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHHhh
Confidence 3579999999999999999998876443
No 333
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.12 E-value=0.006 Score=52.62 Aligned_cols=23 Identities=30% Similarity=0.382 Sum_probs=21.2
Q ss_pred EEEeccCCCchhHHHHHHHHhhc
Q 009306 214 LGIWGIGGIGKTTIAGAIFNKIS 236 (538)
Q Consensus 214 v~I~G~~GiGKTtLa~~~~~~~~ 236 (538)
|.|+|++|+|||+||+.+++.+.
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~ 24 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLG 24 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhh
Confidence 78999999999999999999873
No 334
>PRK04040 adenylate kinase; Provisional
Probab=96.11 E-value=0.0062 Score=55.51 Aligned_cols=25 Identities=28% Similarity=0.494 Sum_probs=22.8
Q ss_pred eEEEEeccCCCchhHHHHHHHHhhc
Q 009306 212 YKLGIWGIGGIGKTTIAGAIFNKIS 236 (538)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (538)
.+|+|+|++|+||||+++.+..++.
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 4799999999999999999999874
No 335
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=96.10 E-value=0.01 Score=56.84 Aligned_cols=26 Identities=27% Similarity=0.492 Sum_probs=22.4
Q ss_pred EEEEeccCCCchhHHHHHHHHhhccc
Q 009306 213 KLGIWGIGGIGKTTIAGAIFNKISRH 238 (538)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~~~~~ 238 (538)
+|.++|++|+||||+|+.++..+...
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~ 26 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEK 26 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 37899999999999999999877543
No 336
>PRK03839 putative kinase; Provisional
Probab=96.10 E-value=0.005 Score=55.83 Aligned_cols=24 Identities=33% Similarity=0.560 Sum_probs=21.7
Q ss_pred EEEEeccCCCchhHHHHHHHHhhc
Q 009306 213 KLGIWGIGGIGKTTIAGAIFNKIS 236 (538)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~~~ 236 (538)
.|.|.|++|+||||+++.+++++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999999864
No 337
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.10 E-value=0.013 Score=51.69 Aligned_cols=125 Identities=20% Similarity=0.198 Sum_probs=62.5
Q ss_pred ceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhhcCChHHHHHHHHHHHhcCCCCCCchhhcHHHHHHHhc
Q 009306 211 VYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEETCRLGDLRQQLLSTLLNDGNVKNFLNTDLNFQSRRLT 290 (538)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~ 290 (538)
..+++|.|+.|.|||||++.++..+.. ..+.+++.... .. ...... ....+.-.... ..-+...-.+...+.
T Consensus 25 g~~~~i~G~nGsGKStll~~l~g~~~~-~~G~i~~~~~~-~~-~~~~~~----~~~~i~~~~ql-S~G~~~r~~l~~~l~ 96 (157)
T cd00267 25 GEIVALVGPNGSGKSTLLRAIAGLLKP-TSGEILIDGKD-IA-KLPLEE----LRRRIGYVPQL-SGGQRQRVALARALL 96 (157)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC-CccEEEECCEE-cc-cCCHHH----HHhceEEEeeC-CHHHHHHHHHHHHHh
Confidence 357999999999999999999876543 34445544210 00 000001 11111100000 111222233445556
Q ss_pred CCCeEEEEecCC---ChHHHHHHhcCcCCC-CCCCEEEEeccchhhhhhcCCCeeEEc
Q 009306 291 RKKVLIVFDDVD---HPRQIKILVGRLDLF-ASGSRIIITTRDRQVLANCGVDEVYQM 344 (538)
Q Consensus 291 ~k~~LlVlDdv~---~~~~~~~l~~~l~~~-~~~~~iiiTtR~~~~~~~~~~~~~~~l 344 (538)
..+-++++|+.. +......+...+... ..+..++++|.+......+ .++++.+
T Consensus 97 ~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~-~d~i~~l 153 (157)
T cd00267 97 LNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELA-ADRVIVL 153 (157)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh-CCEEEEE
Confidence 678899999984 222222222222111 2246788888777665553 2344443
No 338
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=96.10 E-value=0.016 Score=60.84 Aligned_cols=99 Identities=16% Similarity=0.159 Sum_probs=57.6
Q ss_pred hHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhhcCChHHHHHHHHHHHhcCCCCCC
Q 009306 197 MKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEETCRLGDLRQQLLSTLLNDGNVKN 276 (538)
Q Consensus 197 l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~ 276 (538)
++.+..++.. ...++.|+|+.|+||||+...+...+.......+-+.+..+ ..+..+ .+. ....
T Consensus 231 ~~~l~~~~~~---~~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpvE----~~~~~~-----~q~----~v~~ 294 (486)
T TIGR02533 231 LSRFERLIRR---PHGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVE----YQIEGI-----GQI----QVNP 294 (486)
T ss_pred HHHHHHHHhc---CCCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCee----eecCCC-----ceE----EEcc
Confidence 3444444432 23479999999999999999888776543223333332111 011000 000 0011
Q ss_pred ch-hhcHHHHHHHhcCCCeEEEEecCCChHHHHHHh
Q 009306 277 FL-NTDLNFQSRRLTRKKVLIVFDDVDHPRQIKILV 311 (538)
Q Consensus 277 ~~-~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~ 311 (538)
.. ......++..|+..|=.|++.++.+.+......
T Consensus 295 ~~g~~f~~~lr~~LR~dPDvI~vGEiRd~eta~~a~ 330 (486)
T TIGR02533 295 KIGLTFAAGLRAILRQDPDIIMVGEIRDLETAQIAI 330 (486)
T ss_pred ccCccHHHHHHHHHhcCCCEEEEeCCCCHHHHHHHH
Confidence 11 234567778888999999999998887655544
No 339
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=96.10 E-value=0.0092 Score=56.09 Aligned_cols=41 Identities=24% Similarity=0.386 Sum_probs=29.6
Q ss_pred HHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhccc
Q 009306 198 KEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRH 238 (538)
Q Consensus 198 ~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 238 (538)
.++.+.+....++..+|+|+|+||.|||||..++...++..
T Consensus 16 ~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~ 56 (266)
T PF03308_consen 16 RELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRER 56 (266)
T ss_dssp HHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhc
Confidence 34444444434467799999999999999999999987765
No 340
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.09 E-value=0.0058 Score=56.82 Aligned_cols=28 Identities=36% Similarity=0.538 Sum_probs=24.4
Q ss_pred CCceEEEEeccCCCchhHHHHHHHHhhc
Q 009306 209 TNVYKLGIWGIGGIGKTTIAGAIFNKIS 236 (538)
Q Consensus 209 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (538)
+...+++|.|++|+|||||++.++..+.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3567899999999999999999998654
No 341
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.09 E-value=0.041 Score=50.38 Aligned_cols=25 Identities=24% Similarity=0.310 Sum_probs=21.8
Q ss_pred CceEEEEeccCCCchhHHHHHHHHh
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNK 234 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~ 234 (538)
...+++|.|+.|.|||||++.++..
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 32 PGTLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3457999999999999999999864
No 342
>PTZ00035 Rad51 protein; Provisional
Probab=96.07 E-value=0.019 Score=57.47 Aligned_cols=39 Identities=18% Similarity=0.214 Sum_probs=31.2
Q ss_pred hHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhh
Q 009306 197 MKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKI 235 (538)
Q Consensus 197 l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (538)
...|.++|..+-....++.|+|++|+|||+|+..++-..
T Consensus 104 ~~~LD~lLgGGi~~G~iteI~G~~GsGKT~l~~~l~~~~ 142 (337)
T PTZ00035 104 STQLDKLLGGGIETGSITELFGEFRTGKTQLCHTLCVTC 142 (337)
T ss_pred cHHHHHHhCCCCCCCeEEEEECCCCCchhHHHHHHHHHh
Confidence 345667777666667889999999999999999887543
No 343
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.07 E-value=0.0073 Score=51.27 Aligned_cols=40 Identities=18% Similarity=0.157 Sum_probs=28.3
Q ss_pred hHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhc
Q 009306 197 MKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKIS 236 (538)
Q Consensus 197 l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (538)
..++-+.|...-....++.|.|.-|.||||+++.++..+.
T Consensus 8 t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~lg 47 (133)
T TIGR00150 8 MDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGLG 47 (133)
T ss_pred HHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 3344444433223445799999999999999999998753
No 344
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.06 E-value=0.024 Score=56.21 Aligned_cols=39 Identities=26% Similarity=0.250 Sum_probs=31.1
Q ss_pred hhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHh
Q 009306 196 PMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNK 234 (538)
Q Consensus 196 ~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 234 (538)
-...|..+|..+-....++.|+|++|+|||+|+..++..
T Consensus 81 g~~~lD~ll~gGi~~g~i~~i~G~~g~GKT~l~~~~~~~ 119 (316)
T TIGR02239 81 GSKELDKLLGGGIETGSITEIFGEFRTGKTQLCHTLAVT 119 (316)
T ss_pred CCHHHHHHhcCCCCCCeEEEEECCCCCCcCHHHHHHHHH
Confidence 345666777665566788999999999999999998863
No 345
>PRK00131 aroK shikimate kinase; Reviewed
Probab=96.06 E-value=0.0057 Score=54.94 Aligned_cols=26 Identities=23% Similarity=0.362 Sum_probs=23.2
Q ss_pred ceEEEEeccCCCchhHHHHHHHHhhc
Q 009306 211 VYKLGIWGIGGIGKTTIAGAIFNKIS 236 (538)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (538)
...|.|+|++|+||||+|+.++.++.
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l~ 29 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRLG 29 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 45799999999999999999999863
No 346
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.05 E-value=0.032 Score=52.72 Aligned_cols=52 Identities=21% Similarity=0.368 Sum_probs=33.6
Q ss_pred HHHHHHHhcCCCeEEEEecC----CCh--HHHHHHhcCcCCCCCCCEEEEeccchhhhhh
Q 009306 282 LNFQSRRLTRKKVLIVFDDV----DHP--RQIKILVGRLDLFASGSRIIITTRDRQVLAN 335 (538)
Q Consensus 282 ~~~l~~~l~~k~~LlVlDdv----~~~--~~~~~l~~~l~~~~~~~~iiiTtR~~~~~~~ 335 (538)
...+.+.|...+=|++||+- |.. ..+-.++..+. ..|..||++|-+-.....
T Consensus 147 RV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~--~eg~tIl~vtHDL~~v~~ 204 (254)
T COG1121 147 RVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELR--QEGKTVLMVTHDLGLVMA 204 (254)
T ss_pred HHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHH--HCCCEEEEEeCCcHHhHh
Confidence 34556778889999999974 322 23444444443 338889999988755443
No 347
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.05 E-value=0.043 Score=52.40 Aligned_cols=26 Identities=35% Similarity=0.493 Sum_probs=22.5
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhh
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKI 235 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (538)
...+++|.|+.|+|||||++.++...
T Consensus 24 ~Ge~~~i~G~NGsGKSTLlk~L~G~~ 49 (246)
T cd03237 24 ESEVIGILGPNGIGKTTFIKMLAGVL 49 (246)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34579999999999999999998754
No 348
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=96.04 E-value=0.46 Score=49.24 Aligned_cols=25 Identities=24% Similarity=0.391 Sum_probs=21.1
Q ss_pred ceEEEEeccCCCchhHHHHHHHHhh
Q 009306 211 VYKLGIWGIGGIGKTTIAGAIFNKI 235 (538)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (538)
-..++++|+.|+|||||.+.++-.+
T Consensus 416 ~srvAlVGPNG~GKsTLlKl~~gdl 440 (614)
T KOG0927|consen 416 DSRVALVGPNGAGKSTLLKLITGDL 440 (614)
T ss_pred ccceeEecCCCCchhhhHHHHhhcc
Confidence 3458999999999999999888753
No 349
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=96.02 E-value=0.049 Score=59.74 Aligned_cols=25 Identities=28% Similarity=0.343 Sum_probs=21.5
Q ss_pred CceEEEEeccCCCchhHHHHHHHHh
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNK 234 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~ 234 (538)
....++|+|.+|+|||||++.+..-
T Consensus 498 ~Ge~vaIvG~SGsGKSTL~KLL~gl 522 (709)
T COG2274 498 PGEKVAIVGRSGSGKSTLLKLLLGL 522 (709)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3456999999999999999988763
No 350
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.02 E-value=0.019 Score=56.81 Aligned_cols=36 Identities=25% Similarity=0.397 Sum_probs=28.3
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhhccceeeEEEE
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFA 245 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 245 (538)
...+++++|++|+||||++..++..++..-..+..+
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li 148 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLA 148 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEE
Confidence 467899999999999999999998876553333333
No 351
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=96.01 E-value=0.045 Score=48.28 Aligned_cols=23 Identities=26% Similarity=0.515 Sum_probs=19.9
Q ss_pred eEEEEeccCCCchhHHHHHHHHh
Q 009306 212 YKLGIWGIGGIGKTTIAGAIFNK 234 (538)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~ 234 (538)
..++++|++|+|||||...+...
T Consensus 103 ~~v~~~G~~nvGKStliN~l~~~ 125 (157)
T cd01858 103 ISVGFIGYPNVGKSSIINTLRSK 125 (157)
T ss_pred eEEEEEeCCCCChHHHHHHHhcC
Confidence 45789999999999999998763
No 352
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.00 E-value=0.0085 Score=56.08 Aligned_cols=24 Identities=21% Similarity=0.014 Sum_probs=21.2
Q ss_pred CceEEEEeccCCCchhHHHHHHHH
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFN 233 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~ 233 (538)
..++++|+|+.|.||||+.+.++-
T Consensus 30 ~g~~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 30 GGYCQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456789999999999999998887
No 353
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=96.00 E-value=0.01 Score=54.72 Aligned_cols=24 Identities=25% Similarity=0.141 Sum_probs=21.3
Q ss_pred eEEEEeccCCCchhHHHHHHHHhh
Q 009306 212 YKLGIWGIGGIGKTTIAGAIFNKI 235 (538)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~~ 235 (538)
++++|+|+.|.|||||++.++...
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHH
Confidence 789999999999999999988643
No 354
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=95.99 E-value=0.033 Score=51.36 Aligned_cols=25 Identities=28% Similarity=0.372 Sum_probs=22.0
Q ss_pred CceEEEEeccCCCchhHHHHHHHHh
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNK 234 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~ 234 (538)
....++|.|+.|.|||||.+.++..
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 25 KGEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3457999999999999999998875
No 355
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.98 E-value=0.0088 Score=56.56 Aligned_cols=31 Identities=26% Similarity=0.253 Sum_probs=26.6
Q ss_pred CCceEEEEeccCCCchhHHHHHHHHhhccce
Q 009306 209 TNVYKLGIWGIGGIGKTTIAGAIFNKISRHF 239 (538)
Q Consensus 209 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f 239 (538)
+...+++|.|++|.|||||++.++..++...
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~ 61 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQDG 61 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhhcc
Confidence 4578899999999999999999998776543
No 356
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=95.98 E-value=0.0084 Score=53.71 Aligned_cols=36 Identities=19% Similarity=0.114 Sum_probs=27.3
Q ss_pred ceEEEEeccCCCchhHHHHHHHHhhc-cceeeEEEEe
Q 009306 211 VYKLGIWGIGGIGKTTIAGAIFNKIS-RHFSGSYFAR 246 (538)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~-~~f~~~~~~~ 246 (538)
...+.+.|++|+|||.||+.++..+. ......+-+.
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d 39 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRID 39 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEE
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHh
Confidence 34688999999999999999999877 4444344443
No 357
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=95.98 E-value=0.06 Score=47.93 Aligned_cols=34 Identities=26% Similarity=0.301 Sum_probs=25.6
Q ss_pred ceEEEEeccCCCchhHHHHHHHHhhccceeeEEE
Q 009306 211 VYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYF 244 (538)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~ 244 (538)
...+.|+|+.|+|||||.+.++--.+..-..+.|
T Consensus 28 Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~ 61 (209)
T COG4133 28 GEALQITGPNGAGKTTLLRILAGLLRPDAGEVYW 61 (209)
T ss_pred CCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEe
Confidence 3468899999999999999998755544333444
No 358
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=95.97 E-value=0.055 Score=51.46 Aligned_cols=24 Identities=17% Similarity=0.254 Sum_probs=20.5
Q ss_pred EEEEeccCCCchhHHHHHHHHhhc
Q 009306 213 KLGIWGIGGIGKTTIAGAIFNKIS 236 (538)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~~~ 236 (538)
+..|+|++|+|||+|+..++..+.
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va 26 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMA 26 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHh
Confidence 457899999999999999987643
No 359
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=95.94 E-value=0.0064 Score=57.36 Aligned_cols=49 Identities=22% Similarity=0.188 Sum_probs=36.5
Q ss_pred HHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhccc-eeeEEEEe
Q 009306 198 KEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRH-FSGSYFAR 246 (538)
Q Consensus 198 ~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~ 246 (538)
..|.++|..+-+...++.|.|++|+|||+|+.+++...... -..++|+.
T Consensus 6 ~~LD~~l~GGip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs 55 (226)
T PF06745_consen 6 PGLDELLGGGIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVS 55 (226)
T ss_dssp TTHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEE
T ss_pred hhHHHhhcCCCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEE
Confidence 34566665555567789999999999999999998876555 56677776
No 360
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.93 E-value=0.034 Score=51.14 Aligned_cols=59 Identities=24% Similarity=0.287 Sum_probs=36.0
Q ss_pred HHHHHHHhcCCCeEEEEecCCChH---HHHHH---hcCcCCCCCCCEEEEeccchhhhhhcCCCeeE
Q 009306 282 LNFQSRRLTRKKVLIVFDDVDHPR---QIKIL---VGRLDLFASGSRIIITTRDRQVLANCGVDEVY 342 (538)
Q Consensus 282 ~~~l~~~l~~k~~LlVlDdv~~~~---~~~~l---~~~l~~~~~~~~iiiTtR~~~~~~~~~~~~~~ 342 (538)
...+.+.+--+|-+.|||+.|+=- .++.. ...+. .+++-++|.|....++.....+.++
T Consensus 152 R~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr--~~~~~~liITHy~rll~~i~pD~vh 216 (251)
T COG0396 152 RNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALR--EEGRGVLIITHYQRLLDYIKPDKVH 216 (251)
T ss_pred HHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHh--cCCCeEEEEecHHHHHhhcCCCEEE
Confidence 344555556688899999987532 22222 22222 4566777778888788777544443
No 361
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=95.93 E-value=0.022 Score=56.80 Aligned_cols=52 Identities=15% Similarity=0.164 Sum_probs=36.5
Q ss_pred chhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhcc------ceeeEEEEe
Q 009306 195 LPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISR------HFSGSYFAR 246 (538)
Q Consensus 195 ~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~------~f~~~~~~~ 246 (538)
.-...|..+|..+-....++-|+|++|+|||+||..++-.... .-..++|++
T Consensus 107 tG~~~LD~lL~GG~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyId 164 (342)
T PLN03186 107 TGSRELDKILEGGIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYID 164 (342)
T ss_pred CCCHHHHHhhcCCCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEE
Confidence 3445666777655566788999999999999999988854221 112577776
No 362
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=95.93 E-value=0.034 Score=53.28 Aligned_cols=30 Identities=30% Similarity=0.404 Sum_probs=25.7
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhhccce
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKISRHF 239 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f 239 (538)
....++|||++|.|||-+|+.++..+.-.|
T Consensus 165 ~Pkg~ll~GppGtGKTlla~~Vaa~mg~nf 194 (388)
T KOG0651|consen 165 PPKGLLLYGPPGTGKTLLARAVAATMGVNF 194 (388)
T ss_pred CCceeEEeCCCCCchhHHHHHHHHhcCCce
Confidence 356799999999999999999999876554
No 363
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=95.92 E-value=0.034 Score=50.53 Aligned_cols=28 Identities=32% Similarity=0.425 Sum_probs=24.4
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhhcc
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKISR 237 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 237 (538)
...+++|+|++|+||||+|+.+...+..
T Consensus 17 ~~~~i~i~G~~GsGKstla~~l~~~l~~ 44 (184)
T TIGR00455 17 RGVVIWLTGLSGSGKSTIANALEKKLES 44 (184)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4568999999999999999999987653
No 364
>PRK14528 adenylate kinase; Provisional
Probab=95.92 E-value=0.05 Score=49.52 Aligned_cols=23 Identities=26% Similarity=0.371 Sum_probs=20.7
Q ss_pred EEEEeccCCCchhHHHHHHHHhh
Q 009306 213 KLGIWGIGGIGKTTIAGAIFNKI 235 (538)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~~ 235 (538)
.+.|.|++|+||||+|+.++..+
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999998765
No 365
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.92 E-value=0.027 Score=50.94 Aligned_cols=35 Identities=26% Similarity=0.228 Sum_probs=25.9
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhhccceeeEEEE
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFA 245 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 245 (538)
...+++|.|+.|.|||||++.++..... ..+.+.+
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~ 59 (178)
T cd03229 25 AGEIVALLGPSGSGKSTLLRCIAGLEEP-DSGSILI 59 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEE
Confidence 3457999999999999999999865432 3444444
No 366
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.91 E-value=0.0065 Score=55.39 Aligned_cols=26 Identities=31% Similarity=0.220 Sum_probs=22.9
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhh
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKI 235 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (538)
+.++++|.|++|+||||+|+.++..+
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999999765
No 367
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=95.91 E-value=0.0068 Score=54.66 Aligned_cols=25 Identities=24% Similarity=0.263 Sum_probs=22.4
Q ss_pred eEEEEeccCCCchhHHHHHHHHhhc
Q 009306 212 YKLGIWGIGGIGKTTIAGAIFNKIS 236 (538)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (538)
+++.++|++|+||||+|+.+.....
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~ 27 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLA 27 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhC
Confidence 5799999999999999999998754
No 368
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=95.90 E-value=0.045 Score=51.31 Aligned_cols=26 Identities=27% Similarity=0.388 Sum_probs=22.3
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhh
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKI 235 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (538)
...+++|.|+.|.|||||++.++...
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 27 KGEIFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34579999999999999999998743
No 369
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=95.90 E-value=0.07 Score=48.96 Aligned_cols=26 Identities=27% Similarity=0.294 Sum_probs=22.5
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhh
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKI 235 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (538)
....++|.|+.|.|||||.+.++...
T Consensus 34 ~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 34 PGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34579999999999999999998765
No 370
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=95.90 E-value=0.012 Score=53.50 Aligned_cols=36 Identities=19% Similarity=0.277 Sum_probs=30.5
Q ss_pred ceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEe
Q 009306 211 VYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFAR 246 (538)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 246 (538)
.+++.|+|++|+|||||+..+.......|..++...
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~T 37 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSHT 37 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcccccccceeec
Confidence 467999999999999999999999888886555543
No 371
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=95.89 E-value=0.036 Score=49.23 Aligned_cols=23 Identities=35% Similarity=0.668 Sum_probs=20.3
Q ss_pred EEEeccCCCchhHHHHHHHHhhc
Q 009306 214 LGIWGIGGIGKTTIAGAIFNKIS 236 (538)
Q Consensus 214 v~I~G~~GiGKTtLa~~~~~~~~ 236 (538)
++|+|++|+||||+|+.+...+.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~ 23 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLG 23 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcC
Confidence 46899999999999999998763
No 372
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=95.88 E-value=0.018 Score=63.19 Aligned_cols=98 Identities=17% Similarity=0.118 Sum_probs=58.1
Q ss_pred hhHHHHHhhh-cCCCCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhhcCChHHHHHHHHHHHhcCCC-
Q 009306 196 PMKEIESLLR-TGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEETCRLGDLRQQLLSTLLNDGN- 273 (538)
Q Consensus 196 ~l~~l~~~L~-~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~- 273 (538)
-...|..+|. .+-+..+++-|+|++|+||||||..++......-..++|+..... ... ..++ .++...+
T Consensus 44 Gi~~LD~lLg~GGip~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t----~~~-~~A~----~lGvDl~~ 114 (790)
T PRK09519 44 GSIALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHA----LDP-DYAK----KLGVDTDS 114 (790)
T ss_pred CcHHHHHhhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccc----hhH-HHHH----HcCCChhH
Confidence 3456677776 455667889999999999999999887765455566777762211 111 1222 2222110
Q ss_pred ----CCCchhhcHHHHHHHhc-CCCeEEEEecCC
Q 009306 274 ----VKNFLNTDLNFQSRRLT-RKKVLIVFDDVD 302 (538)
Q Consensus 274 ----~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~ 302 (538)
.....+.....+...+. ++.-|||+|.+.
T Consensus 115 llv~~~~~~E~~l~~i~~lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 115 LLVSQPDTGEQALEIADMLIRSGALDIVVIDSVA 148 (790)
T ss_pred eEEecCCCHHHHHHHHHHHhhcCCCeEEEEcchh
Confidence 01233344444444443 466799999874
No 373
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=95.88 E-value=0.21 Score=53.15 Aligned_cols=48 Identities=31% Similarity=0.466 Sum_probs=38.5
Q ss_pred CCceeccchhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhh
Q 009306 188 EDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKI 235 (538)
Q Consensus 188 ~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (538)
..++|....++.+.+.+..-......|.|+|.+|+||+.+|+.+++.-
T Consensus 212 ~~iiG~S~~m~~~~~~i~~~A~~~~pVLI~GE~GTGKe~lA~~IH~~S 259 (526)
T TIGR02329 212 DDLLGASAPMEQVRALVRLYARSDATVLILGESGTGKELVAQAIHQLS 259 (526)
T ss_pred hheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCcCHHHHHHHHHHhc
Confidence 568999999998888775422334569999999999999999998753
No 374
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=95.88 E-value=0.23 Score=51.57 Aligned_cols=73 Identities=22% Similarity=0.226 Sum_probs=47.2
Q ss_pred ceeccchhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhc-cceeeEEEEeehhhhhhcCChHHHHHHHHHHH
Q 009306 190 LVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKIS-RHFSGSYFARNVREAEETCRLGDLRQQLLSTL 268 (538)
Q Consensus 190 ~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~-~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l 268 (538)
..|...-+..|.+++. +-....++.|.|.+|+|||++|..++.... .+-..++|++. .-....+...++...
T Consensus 174 ~~gi~tG~~~LD~~~~-G~~~g~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fSl------Em~~~~l~~Rl~~~~ 246 (421)
T TIGR03600 174 LTGLSTGLPKLDRLTN-GLVKGDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFSL------EMSAEQLGERLLASK 246 (421)
T ss_pred CcceeCCChhHHHHhc-CCCCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC------CCCHHHHHHHHHHHH
Confidence 4555556666666665 444566899999999999999999997664 33334555441 234455566665544
Q ss_pred h
Q 009306 269 L 269 (538)
Q Consensus 269 ~ 269 (538)
.
T Consensus 247 ~ 247 (421)
T TIGR03600 247 S 247 (421)
T ss_pred c
Confidence 3
No 375
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=95.88 E-value=0.026 Score=55.54 Aligned_cols=89 Identities=18% Similarity=0.185 Sum_probs=53.7
Q ss_pred eEEEEeccCCCchhHHHHHHHHhhccce--eeEEEEeehhhhhhc-CChHHHHHHHHHHHhcCCCCCCchhhcHHHHHHH
Q 009306 212 YKLGIWGIGGIGKTTIAGAIFNKISRHF--SGSYFARNVREAEET-CRLGDLRQQLLSTLLNDGNVKNFLNTDLNFQSRR 288 (538)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f--~~~~~~~~~~~~~~~-~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~~ 288 (538)
..+.|+|+.|+||||+++.++..+.... ...+-+.+..+.... .... .+. .. .........++..
T Consensus 133 ~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v--------~~~--~~--~~~~~~~~~l~~a 200 (299)
T TIGR02782 133 KNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVV--------QLR--TS--DDAISMTRLLKAT 200 (299)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEE--------EEE--ec--CCCCCHHHHHHHH
Confidence 3588999999999999999998875532 223333322221110 0000 000 00 1112455677788
Q ss_pred hcCCCeEEEEecCCChHHHHHHhc
Q 009306 289 LTRKKVLIVFDDVDHPRQIKILVG 312 (538)
Q Consensus 289 l~~k~~LlVlDdv~~~~~~~~l~~ 312 (538)
|+..+=.||+.++.+.+.++.+..
T Consensus 201 LR~~pD~iivGEiR~~ea~~~l~a 224 (299)
T TIGR02782 201 LRLRPDRIIVGEVRGGEALDLLKA 224 (299)
T ss_pred hcCCCCEEEEeccCCHHHHHHHHH
Confidence 888999999999988776665443
No 376
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=95.88 E-value=0.021 Score=57.75 Aligned_cols=52 Identities=23% Similarity=0.314 Sum_probs=35.6
Q ss_pred CCceeccchhHHHHHhhhc------------CCCCceEEEEeccCCCchhHHHHHHHHhhccce
Q 009306 188 EDLVGVRLPMKEIESLLRT------------GSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHF 239 (538)
Q Consensus 188 ~~~vGR~~~l~~l~~~L~~------------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f 239 (538)
..++|.+...+.+...+.. +....+-+.++|++|+|||+||+.++..+...|
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~f 75 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPF 75 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 4466776666666443331 011235689999999999999999999876544
No 377
>PRK00625 shikimate kinase; Provisional
Probab=95.87 E-value=0.007 Score=54.32 Aligned_cols=23 Identities=26% Similarity=0.418 Sum_probs=21.2
Q ss_pred EEEeccCCCchhHHHHHHHHhhc
Q 009306 214 LGIWGIGGIGKTTIAGAIFNKIS 236 (538)
Q Consensus 214 v~I~G~~GiGKTtLa~~~~~~~~ 236 (538)
|.|+|++|+||||+++.+++++.
T Consensus 3 I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 3 IFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 88999999999999999998764
No 378
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=95.86 E-value=0.05 Score=49.92 Aligned_cols=108 Identities=15% Similarity=0.084 Sum_probs=55.8
Q ss_pred EEEeccCCCchhHHHHHHHHhhccc---e-ee-EEEEeehhhhhhc-CChHHHHHHHHHHHhcCCCCCCchhhcHHHHHH
Q 009306 214 LGIWGIGGIGKTTIAGAIFNKISRH---F-SG-SYFARNVREAEET-CRLGDLRQQLLSTLLNDGNVKNFLNTDLNFQSR 287 (538)
Q Consensus 214 v~I~G~~GiGKTtLa~~~~~~~~~~---f-~~-~~~~~~~~~~~~~-~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~ 287 (538)
..|.|++|+|||||.+.++.-+... | +. ++-++.-++.... .+.... .+...+.-. +.....+-....++
T Consensus 140 tLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~--~~g~R~dVl-d~cpk~~gmmmaIr- 215 (308)
T COG3854 140 TLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQH--GRGRRMDVL-DPCPKAEGMMMAIR- 215 (308)
T ss_pred eEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchh--hhhhhhhhc-ccchHHHHHHHHHH-
Confidence 7788999999999999999865433 3 22 2333211111110 000000 000000000 00011111222222
Q ss_pred HhcCCCeEEEEecCCChHHHHHHhcCcCCCCCCCEEEEeccch
Q 009306 288 RLTRKKVLIVFDDVDHPRQIKILVGRLDLFASGSRIIITTRDR 330 (538)
Q Consensus 288 ~l~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~~~~iiiTtR~~ 330 (538)
...|=++|+|++-..++..++...+ ..|.+++.|....
T Consensus 216 --sm~PEViIvDEIGt~~d~~A~~ta~---~~GVkli~TaHG~ 253 (308)
T COG3854 216 --SMSPEVIIVDEIGTEEDALAILTAL---HAGVKLITTAHGN 253 (308)
T ss_pred --hcCCcEEEEeccccHHHHHHHHHHH---hcCcEEEEeeccc
Confidence 3467799999998777766666554 5688888776544
No 379
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=95.86 E-value=0.07 Score=53.08 Aligned_cols=23 Identities=22% Similarity=0.378 Sum_probs=20.9
Q ss_pred EEEeccCCCchhHHHHHHHHhhc
Q 009306 214 LGIWGIGGIGKTTIAGAIFNKIS 236 (538)
Q Consensus 214 v~I~G~~GiGKTtLa~~~~~~~~ 236 (538)
++++|++|.||||+++.+...+.
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~ 24 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLR 24 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHH
Confidence 67899999999999999998775
No 380
>PRK06547 hypothetical protein; Provisional
Probab=95.85 E-value=0.0085 Score=53.74 Aligned_cols=27 Identities=37% Similarity=0.460 Sum_probs=23.9
Q ss_pred CCceEEEEeccCCCchhHHHHHHHHhh
Q 009306 209 TNVYKLGIWGIGGIGKTTIAGAIFNKI 235 (538)
Q Consensus 209 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (538)
....+|+|.|++|+||||+|+.++...
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 457789999999999999999999864
No 381
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.85 E-value=0.027 Score=52.79 Aligned_cols=24 Identities=33% Similarity=0.422 Sum_probs=21.8
Q ss_pred EEEEeccCCCchhHHHHHHHHhhc
Q 009306 213 KLGIWGIGGIGKTTIAGAIFNKIS 236 (538)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~~~ 236 (538)
+++|.|++|+||||||+.+...+.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHh
Confidence 489999999999999999998775
No 382
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=95.84 E-value=0.026 Score=57.69 Aligned_cols=27 Identities=22% Similarity=0.262 Sum_probs=23.1
Q ss_pred eEEEEeccCCCchhHHHHHHHHhhccc
Q 009306 212 YKLGIWGIGGIGKTTIAGAIFNKISRH 238 (538)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~~~~~ 238 (538)
..+.|+|++|+|||+||+.++..+...
T Consensus 117 ~~iLL~GP~GsGKT~lAraLA~~l~~p 143 (413)
T TIGR00382 117 SNILLIGPTGSGKTLLAQTLARILNVP 143 (413)
T ss_pred ceEEEECCCCcCHHHHHHHHHHhcCCC
Confidence 468999999999999999999876433
No 383
>PRK03846 adenylylsulfate kinase; Provisional
Probab=95.82 E-value=0.012 Score=54.36 Aligned_cols=38 Identities=26% Similarity=0.346 Sum_probs=29.4
Q ss_pred CCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEe
Q 009306 209 TNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFAR 246 (538)
Q Consensus 209 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 246 (538)
....+++|+|++|+||||||+.+...+.......+++.
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld 59 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLD 59 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEc
Confidence 34668999999999999999999987755433455553
No 384
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=95.81 E-value=0.0069 Score=56.04 Aligned_cols=22 Identities=32% Similarity=0.009 Sum_probs=20.4
Q ss_pred eEEEEeccCCCchhHHHHHHHH
Q 009306 212 YKLGIWGIGGIGKTTIAGAIFN 233 (538)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~ 233 (538)
.+++|+|+.|.||||+.+.++.
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 6799999999999999999984
No 385
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=95.81 E-value=0.043 Score=54.01 Aligned_cols=102 Identities=17% Similarity=0.073 Sum_probs=54.7
Q ss_pred HHHHHhhh-cCCCCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhhcCChHHHHHHHHHHHhcCCC-CC
Q 009306 198 KEIESLLR-TGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEETCRLGDLRQQLLSTLLNDGN-VK 275 (538)
Q Consensus 198 ~~l~~~L~-~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~-~~ 275 (538)
..|...|. .+-+..+++-|+|+.|+||||||..+..........++|+..- .... ...++.+.-.+....- .+
T Consensus 39 ~~LD~aLg~GG~p~G~ivEi~G~~ssGKttLaL~~ia~~q~~g~~~a~ID~e----~~ld-~~~a~~lGvdl~rllv~~P 113 (322)
T PF00154_consen 39 PALDYALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKQGGICAFIDAE----HALD-PEYAESLGVDLDRLLVVQP 113 (322)
T ss_dssp HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTT-EEEEEESS----S----HHHHHHTT--GGGEEEEE-
T ss_pred cccchhhccCccccCceEEEeCCCCCchhhhHHHHHHhhhcccceeEEecCc----ccch-hhHHHhcCccccceEEecC
Confidence 34555565 3334577899999999999999999998766556677887621 1111 1222222222111100 01
Q ss_pred CchhhcHHHHHHHhcC-CCeEEEEecCCCh
Q 009306 276 NFLNTDLNFQSRRLTR-KKVLIVFDDVDHP 304 (538)
Q Consensus 276 ~~~~~~~~~l~~~l~~-k~~LlVlDdv~~~ 304 (538)
...++....+...++. .--++|+|.|...
T Consensus 114 ~~~E~al~~~e~lirsg~~~lVVvDSv~al 143 (322)
T PF00154_consen 114 DTGEQALWIAEQLIRSGAVDLVVVDSVAAL 143 (322)
T ss_dssp SSHHHHHHHHHHHHHTTSESEEEEE-CTT-
T ss_pred CcHHHHHHHHHHHhhcccccEEEEecCccc
Confidence 2334444444444443 3458899988543
No 386
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=95.81 E-value=0.0063 Score=54.29 Aligned_cols=24 Identities=29% Similarity=0.513 Sum_probs=20.7
Q ss_pred EEEeccCCCchhHHHHHHHHhhcc
Q 009306 214 LGIWGIGGIGKTTIAGAIFNKISR 237 (538)
Q Consensus 214 v~I~G~~GiGKTtLa~~~~~~~~~ 237 (538)
+.|+|.+|+|||||++.+++.++.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~ 25 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKK 25 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhhc
Confidence 789999999999999999998753
No 387
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=95.78 E-value=0.0089 Score=54.08 Aligned_cols=26 Identities=38% Similarity=0.515 Sum_probs=22.7
Q ss_pred EEEEeccCCCchhHHHHHHHHhhccc
Q 009306 213 KLGIWGIGGIGKTTIAGAIFNKISRH 238 (538)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~~~~~ 238 (538)
+|+|.|.+|+||||||..+...+...
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~ 26 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVN 26 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 48999999999999999999887543
No 388
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=95.78 E-value=0.011 Score=52.71 Aligned_cols=46 Identities=28% Similarity=0.360 Sum_probs=33.6
Q ss_pred ceeccchhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhh
Q 009306 190 LVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKI 235 (538)
Q Consensus 190 ~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (538)
+||.+..++++.+.+..-......|.|+|..|.||+.+|+.+.+.-
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s 46 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNS 46 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCS
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhh
Confidence 4678888888887776522333558899999999999999999853
No 389
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=95.78 E-value=0.021 Score=56.75 Aligned_cols=132 Identities=15% Similarity=0.117 Sum_probs=68.0
Q ss_pred ceEEEEeccCCCchhHHHHHHHHhhcccee-------eEEEEe-e------hhhhhhcCChHHHHHHHHHHHhcC-----
Q 009306 211 VYKLGIWGIGGIGKTTIAGAIFNKISRHFS-------GSYFAR-N------VREAEETCRLGDLRQQLLSTLLND----- 271 (538)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~-------~~~~~~-~------~~~~~~~~~~~~l~~~l~~~l~~~----- 271 (538)
.-++.|+|.+|+||||+.+.+......... +.+-+. + .++.....+-..+++++.+..++.
T Consensus 409 GdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~a~iPge~Ep~f~~~tilehl~s~tGD~~~Ave 488 (593)
T COG2401 409 GDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSALIPGEYEPEFGEVTILEHLRSKTGDLNAAVE 488 (593)
T ss_pred CCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchhhccCcccccccCchhHHHHHhhccCchhHHHH
Confidence 346899999999999999998875433211 111110 0 001111112224455554443331
Q ss_pred --------CC-------CC-CchhhcHHHHHHHhcCCCeEEEEecCCCh---HHHHHHhcCcCCC--CCCCEEEEeccch
Q 009306 272 --------GN-------VK-NFLNTDLNFQSRRLTRKKVLIVFDDVDHP---RQIKILVGRLDLF--ASGSRIIITTRDR 330 (538)
Q Consensus 272 --------~~-------~~-~~~~~~~~~l~~~l~~k~~LlVlDdv~~~---~~~~~l~~~l~~~--~~~~~iiiTtR~~ 330 (538)
.. .+ ..-+.-...+.+.+.+++-++++|.+... .....++..+... ..|..+++.|+.+
T Consensus 489 ILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaRe~giTlivvThrp 568 (593)
T COG2401 489 ILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHRP 568 (593)
T ss_pred HHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCH
Confidence 00 00 11122234556677888899999998432 1111111111111 2477788888888
Q ss_pred hhhhhcCCCeeE
Q 009306 331 QVLANCGVDEVY 342 (538)
Q Consensus 331 ~~~~~~~~~~~~ 342 (538)
++...+..+..+
T Consensus 569 Ev~~AL~PD~li 580 (593)
T COG2401 569 EVGNALRPDTLI 580 (593)
T ss_pred HHHhccCCceeE
Confidence 887777655443
No 390
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=95.78 E-value=0.37 Score=46.81 Aligned_cols=126 Identities=9% Similarity=0.007 Sum_probs=69.3
Q ss_pred HHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhccc-------------eeeEEEEeehhhhhhcCChHHHHHHH
Q 009306 198 KEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRH-------------FSGSYFARNVREAEETCRLGDLRQQL 264 (538)
Q Consensus 198 ~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-------------f~~~~~~~~~~~~~~~~~~~~l~~~l 264 (538)
++|...+..+ .-.....++|+.|+||+++|..++..+-.. ++...++.-. .
T Consensus 7 ~~L~~~i~~~-rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~-----~---------- 70 (290)
T PRK05917 7 EALIQRVRDQ-KVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQ-----G---------- 70 (290)
T ss_pred HHHHHHHHcC-CcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecC-----C----------
Confidence 3445555432 235568899999999999999999865321 1111221100 0
Q ss_pred HHHHhcCCCCCCchhhcHHHHHHHh-----cCCCeEEEEecCCC--hHHHHHHhcCcCCCCCCCEEEEeccc-hhhhhhc
Q 009306 265 LSTLLNDGNVKNFLNTDLNFQSRRL-----TRKKVLIVFDDVDH--PRQIKILVGRLDLFASGSRIIITTRD-RQVLANC 336 (538)
Q Consensus 265 ~~~l~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~--~~~~~~l~~~l~~~~~~~~iiiTtR~-~~~~~~~ 336 (538)
......+++.. .+.+.+ .++.=++|+|+++. .+....++..+....++..+|++|.+ ..+++..
T Consensus 71 -------~~~~I~idqiR-~l~~~~~~~p~e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~TI 142 (290)
T PRK05917 71 -------KGRLHSIETPR-AIKKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTI 142 (290)
T ss_pred -------CCCcCcHHHHH-HHHHHHhhCccCCCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHHH
Confidence 00001122211 122222 23445889999974 45677787777765667776666655 4444443
Q ss_pred -CCCeeEEcCCC
Q 009306 337 -GVDEVYQMEEL 347 (538)
Q Consensus 337 -~~~~~~~l~~L 347 (538)
.....+.+.++
T Consensus 143 ~SRcq~~~~~~~ 154 (290)
T PRK05917 143 RSRSLSIHIPME 154 (290)
T ss_pred HhcceEEEccch
Confidence 23456677665
No 391
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=95.77 E-value=0.093 Score=55.42 Aligned_cols=48 Identities=23% Similarity=0.322 Sum_probs=38.3
Q ss_pred CCceeccchhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhh
Q 009306 188 EDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKI 235 (538)
Q Consensus 188 ~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (538)
..++|+...+..+.+.+..-......+.|+|.+|+|||++|+.+....
T Consensus 138 ~~lig~s~~~~~l~~~~~~~~~~~~~vli~Ge~GtGK~~lA~~ih~~s 185 (469)
T PRK10923 138 TDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHS 185 (469)
T ss_pred ccceecCHHHHHHHHHHHHHhccCCeEEEEeCCCCcHHHHHHHHHhcC
Confidence 468999988888887775433345568999999999999999988753
No 392
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=95.77 E-value=0.049 Score=59.37 Aligned_cols=26 Identities=23% Similarity=0.437 Sum_probs=22.7
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhh
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKI 235 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (538)
....++|+|++|.|||||++.+...+
T Consensus 375 ~G~~vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 375 AGQRIALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44579999999999999999998765
No 393
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=95.77 E-value=0.015 Score=55.56 Aligned_cols=43 Identities=26% Similarity=0.351 Sum_probs=33.2
Q ss_pred HHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhcccee
Q 009306 198 KEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFS 240 (538)
Q Consensus 198 ~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~ 240 (538)
.+|...+....++..+++|+|.||.|||||.-++..++..+-.
T Consensus 38 ~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~ 80 (323)
T COG1703 38 RELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGH 80 (323)
T ss_pred HHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCc
Confidence 3445555555567789999999999999999999988766543
No 394
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.77 E-value=0.065 Score=49.52 Aligned_cols=27 Identities=22% Similarity=0.202 Sum_probs=23.2
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhhc
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKIS 236 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (538)
...+++|.|+.|+|||||++.++....
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 58 (202)
T cd03233 32 PGEMVLVLGRPGSGCSTLLKALANRTE 58 (202)
T ss_pred CCcEEEEECCCCCCHHHHHHHhcccCC
Confidence 445799999999999999999887654
No 395
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.76 E-value=0.0085 Score=51.75 Aligned_cols=25 Identities=32% Similarity=0.476 Sum_probs=22.1
Q ss_pred EEEEeccCCCchhHHHHHHHHhhcc
Q 009306 213 KLGIWGIGGIGKTTIAGAIFNKISR 237 (538)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~~~~ 237 (538)
+|.|.|++|+||||+|+.+++.+.-
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl 26 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGL 26 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCC
Confidence 5889999999999999999987643
No 396
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=95.74 E-value=0.027 Score=60.10 Aligned_cols=52 Identities=17% Similarity=0.176 Sum_probs=40.1
Q ss_pred chhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEe
Q 009306 195 LPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFAR 246 (538)
Q Consensus 195 ~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 246 (538)
.-+..|.++|..+-....++.|.|++|+|||+|+..++.........++|+.
T Consensus 257 tGi~~lD~~l~GG~~~g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis 308 (509)
T PRK09302 257 SGVPDLDEMLGGGFFRGSIILVSGATGTGKTLLASKFAEAACRRGERCLLFA 308 (509)
T ss_pred CCcHHHHHhhcCCCCCCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEE
Confidence 3455666777655556678999999999999999999987666666777776
No 397
>PTZ00088 adenylate kinase 1; Provisional
Probab=95.74 E-value=0.03 Score=52.69 Aligned_cols=22 Identities=32% Similarity=0.517 Sum_probs=20.5
Q ss_pred EEEeccCCCchhHHHHHHHHhh
Q 009306 214 LGIWGIGGIGKTTIAGAIFNKI 235 (538)
Q Consensus 214 v~I~G~~GiGKTtLa~~~~~~~ 235 (538)
|.|.|++|+||||+|+.+++.+
T Consensus 9 Ivl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8899999999999999998875
No 398
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=95.73 E-value=0.04 Score=50.43 Aligned_cols=27 Identities=30% Similarity=0.159 Sum_probs=23.1
Q ss_pred ceEEEEeccCCCchhHHHHHHHHhhcc
Q 009306 211 VYKLGIWGIGGIGKTTIAGAIFNKISR 237 (538)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~~ 237 (538)
..+..|.|++|+|||+++..++..+..
T Consensus 32 g~l~~i~g~~g~GKT~~~~~l~~~~~~ 58 (193)
T PF13481_consen 32 GELTLIAGPPGSGKTTLALQLAAALAT 58 (193)
T ss_dssp TSEEEEEECSTSSHHHHHHHHHHHHHT
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 347899999999999999999987654
No 399
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=95.70 E-value=0.049 Score=51.69 Aligned_cols=26 Identities=27% Similarity=0.346 Sum_probs=22.5
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhh
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKI 235 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (538)
...+++|.|+.|+|||||.+.++.-+
T Consensus 27 ~G~i~~iiGpNG~GKSTLLk~l~g~l 52 (258)
T COG1120 27 KGEITGILGPNGSGKSTLLKCLAGLL 52 (258)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccC
Confidence 45689999999999999999998743
No 400
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.69 E-value=0.017 Score=53.37 Aligned_cols=24 Identities=25% Similarity=-0.035 Sum_probs=21.0
Q ss_pred CceEEEEeccCCCchhHHHHHHHH
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFN 233 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~ 233 (538)
..++++|+|+.|.||||+.+.++.
T Consensus 28 ~~~~~~l~G~n~~GKstll~~i~~ 51 (204)
T cd03282 28 SSRFHIITGPNMSGKSTYLKQIAL 51 (204)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 347899999999999999998875
No 401
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=95.69 E-value=0.0072 Score=54.90 Aligned_cols=23 Identities=26% Similarity=0.281 Sum_probs=20.8
Q ss_pred EEEEeccCCCchhHHHHHHHHhh
Q 009306 213 KLGIWGIGGIGKTTIAGAIFNKI 235 (538)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~~ 235 (538)
+|.|.|++|+||||+|+.++.++
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 47899999999999999998875
No 402
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=95.66 E-value=0.038 Score=53.48 Aligned_cols=36 Identities=17% Similarity=0.214 Sum_probs=29.5
Q ss_pred CCceEEEEeccCCCchhHHHHHHHHhhccceeeEEE
Q 009306 209 TNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYF 244 (538)
Q Consensus 209 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~ 244 (538)
.+..++.|.|.+|.|||||+..+...+.......+.
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~VI 137 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVI 137 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhccCCCEEEE
Confidence 457889999999999999999999987766544444
No 403
>PRK10436 hypothetical protein; Provisional
Probab=95.66 E-value=0.038 Score=57.56 Aligned_cols=99 Identities=12% Similarity=0.091 Sum_probs=57.3
Q ss_pred hHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhhcCChHHHHHHHHHHHhcCCCCC-
Q 009306 197 MKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEETCRLGDLRQQLLSTLLNDGNVK- 275 (538)
Q Consensus 197 l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~- 275 (538)
++.+.+++.. ....+.|+|+.|+||||....+...+......++-+.+.-+ ..+..+ .+. ...
T Consensus 207 ~~~l~~~~~~---~~GliLvtGpTGSGKTTtL~a~l~~~~~~~~~i~TiEDPvE----~~l~gi-----~Q~----~v~~ 270 (462)
T PRK10436 207 LAQFRQALQQ---PQGLILVTGPTGSGKTVTLYSALQTLNTAQINICSVEDPVE----IPLAGI-----NQT----QIHP 270 (462)
T ss_pred HHHHHHHHHh---cCCeEEEECCCCCChHHHHHHHHHhhCCCCCEEEEecCCcc----ccCCCc-----ceE----eeCC
Confidence 4445555542 34579999999999999888777765443222222321111 111000 000 001
Q ss_pred CchhhcHHHHHHHhcCCCeEEEEecCCChHHHHHHh
Q 009306 276 NFLNTDLNFQSRRLTRKKVLIVFDDVDHPRQIKILV 311 (538)
Q Consensus 276 ~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~ 311 (538)
..-......++..|+..|=.|++.++.+.+..+...
T Consensus 271 ~~g~~f~~~lr~~LR~dPDvI~vGEIRD~eta~~al 306 (462)
T PRK10436 271 KAGLTFQRVLRALLRQDPDVIMVGEIRDGETAEIAI 306 (462)
T ss_pred ccCcCHHHHHHHHhcCCCCEEEECCCCCHHHHHHHH
Confidence 111235667788888999999999998887766433
No 404
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=95.65 E-value=0.016 Score=57.34 Aligned_cols=58 Identities=22% Similarity=0.237 Sum_probs=40.1
Q ss_pred CCCCceeccchhHHH---HHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhccceeeEE
Q 009306 186 ENEDLVGVRLPMKEI---ESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSY 243 (538)
Q Consensus 186 ~~~~~vGR~~~l~~l---~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~ 243 (538)
....+||.....+.. .++...+.-..+.+.|.|++|.|||+||..+++.+....+.+.
T Consensus 22 ~~~GlVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~ 82 (398)
T PF06068_consen 22 IADGLVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVS 82 (398)
T ss_dssp EETTEES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEE
T ss_pred ccccccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeE
Confidence 346899998766544 4455554445688999999999999999999999987766443
No 405
>PRK13947 shikimate kinase; Provisional
Probab=95.64 E-value=0.0095 Score=53.40 Aligned_cols=25 Identities=28% Similarity=0.418 Sum_probs=22.2
Q ss_pred EEEEeccCCCchhHHHHHHHHhhcc
Q 009306 213 KLGIWGIGGIGKTTIAGAIFNKISR 237 (538)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~~~~ 237 (538)
.|.|+|++|+||||+|+.+++++.-
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~ 27 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSF 27 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 3899999999999999999988743
No 406
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=95.64 E-value=0.059 Score=58.69 Aligned_cols=26 Identities=23% Similarity=0.276 Sum_probs=22.0
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhh
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKI 235 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (538)
....++|+|++|.|||||++.+...+
T Consensus 360 ~G~~v~IvG~sGsGKSTLl~lL~gl~ 385 (588)
T PRK13657 360 PGQTVAIVGPTGAGKSTLINLLQRVF 385 (588)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 34569999999999999999988643
No 407
>PF13245 AAA_19: Part of AAA domain
Probab=95.63 E-value=0.02 Score=43.60 Aligned_cols=25 Identities=28% Similarity=0.262 Sum_probs=18.0
Q ss_pred ceEEEEeccCCCchhHHHHHHHHhh
Q 009306 211 VYKLGIWGIGGIGKTTIAGAIFNKI 235 (538)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (538)
.+++.|.|++|.|||+++......+
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l 34 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAEL 34 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3467789999999996555555443
No 408
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=95.63 E-value=0.0089 Score=51.47 Aligned_cols=25 Identities=20% Similarity=0.474 Sum_probs=21.7
Q ss_pred EEEeccCCCchhHHHHHHHHhhccc
Q 009306 214 LGIWGIGGIGKTTIAGAIFNKISRH 238 (538)
Q Consensus 214 v~I~G~~GiGKTtLa~~~~~~~~~~ 238 (538)
++|+|++|+|||||++.++..+...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~~~ 26 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFDPN 26 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCcc
Confidence 7899999999999999999876444
No 409
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=95.62 E-value=0.051 Score=57.52 Aligned_cols=53 Identities=25% Similarity=0.327 Sum_probs=33.7
Q ss_pred HHHHHHHhcCCCeEEEEecCCC---hHHHHHHhcCcCCCCCCCEEEEeccchhhhhhc
Q 009306 282 LNFQSRRLTRKKVLIVFDDVDH---PRQIKILVGRLDLFASGSRIIITTRDRQVLANC 336 (538)
Q Consensus 282 ~~~l~~~l~~k~~LlVlDdv~~---~~~~~~l~~~l~~~~~~~~iiiTtR~~~~~~~~ 336 (538)
...+.+.|-.+|=+++||+--+ .+.+..+-..+.. -+| .+||+|-++..+..+
T Consensus 161 Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~-~~g-tviiVSHDR~FLd~V 216 (530)
T COG0488 161 RVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKR-YPG-TVIVVSHDRYFLDNV 216 (530)
T ss_pred HHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh-CCC-cEEEEeCCHHHHHHH
Confidence 3455566778899999998643 2333333333322 234 788899999887765
No 410
>PRK06217 hypothetical protein; Validated
Probab=95.60 E-value=0.0099 Score=54.05 Aligned_cols=24 Identities=29% Similarity=0.569 Sum_probs=21.7
Q ss_pred EEEEeccCCCchhHHHHHHHHhhc
Q 009306 213 KLGIWGIGGIGKTTIAGAIFNKIS 236 (538)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~~~ 236 (538)
.|+|.|++|+||||+|+++...+.
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~ 26 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLD 26 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 389999999999999999998764
No 411
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=95.60 E-value=0.014 Score=63.01 Aligned_cols=59 Identities=15% Similarity=0.244 Sum_probs=46.1
Q ss_pred CCCCCceeccchhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhccc-eeeEEEEee
Q 009306 185 SENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRH-FSGSYFARN 247 (538)
Q Consensus 185 ~~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~~ 247 (538)
..-+.++|.+..++.|...+..+ +.+.|+|++|+||||+|+.++..+... +....|+.+
T Consensus 28 ~~~~~vigq~~a~~~L~~~~~~~----~~~l~~G~~G~GKttla~~l~~~l~~~~~~~~~~~~n 87 (637)
T PRK13765 28 RLIDQVIGQEHAVEVIKKAAKQR----RHVMMIGSPGTGKSMLAKAMAELLPKEELQDILVYPN 87 (637)
T ss_pred ccHHHcCChHHHHHHHHHHHHhC----CeEEEECCCCCcHHHHHHHHHHHcChHhHHHheEeeC
Confidence 44577899999888888877643 368999999999999999999876543 366677664
No 412
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=95.59 E-value=0.097 Score=45.22 Aligned_cols=47 Identities=13% Similarity=0.081 Sum_probs=29.2
Q ss_pred HHHHHHHHhcceEEEEeccCcccchhhHHHHHHHHHHHhhcCCeEEEEE
Q 009306 62 QSLLDAIEASSISIIIFSESYASSRWCLDELLKILECKKEYAQIVVPVF 110 (538)
Q Consensus 62 ~~i~~~i~~s~~~i~v~S~~y~~s~~c~~El~~~~~~~~~~~~~v~pv~ 110 (538)
.++.++|++++.+|.|++...-.+.+. .++...+.... .+.+++.|+
T Consensus 3 ~~~~~~i~~aD~vl~ViD~~~p~~~~~-~~l~~~l~~~~-~~k~~iivl 49 (141)
T cd01857 3 RQLWRVVERSDIVVQIVDARNPLLFRP-PDLERYVKEVD-PRKKNILLL 49 (141)
T ss_pred HHHHHHHhhCCEEEEEEEccCCcccCC-HHHHHHHHhcc-CCCcEEEEE
Confidence 567899999999999998765444442 24555444331 234455554
No 413
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.57 E-value=0.053 Score=55.85 Aligned_cols=27 Identities=26% Similarity=0.322 Sum_probs=23.8
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhhc
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKIS 236 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (538)
...++.++|++|+||||++..++..+.
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~ 124 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLK 124 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 357899999999999999999998765
No 414
>PRK15115 response regulator GlrR; Provisional
Probab=95.56 E-value=0.24 Score=51.92 Aligned_cols=48 Identities=27% Similarity=0.214 Sum_probs=34.3
Q ss_pred CCceeccchhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhh
Q 009306 188 EDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKI 235 (538)
Q Consensus 188 ~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (538)
..++|....+..+.+....-......+.|+|.+|+|||++|+.+...-
T Consensus 134 ~~lig~s~~~~~~~~~~~~~a~~~~~vli~Ge~GtGk~~lA~~ih~~s 181 (444)
T PRK15115 134 EAIVTRSPLMLRLLEQARMVAQSDVSVLINGQSGTGKEILAQAIHNAS 181 (444)
T ss_pred hcccccCHHHHHHHHHHHhhccCCCeEEEEcCCcchHHHHHHHHHHhc
Confidence 357888777766665443322233458899999999999999888754
No 415
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=95.55 E-value=0.11 Score=47.76 Aligned_cols=21 Identities=38% Similarity=0.357 Sum_probs=19.4
Q ss_pred EEEEeccCCCchhHHHHHHHH
Q 009306 213 KLGIWGIGGIGKTTIAGAIFN 233 (538)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~ 233 (538)
+++|+|+.|.|||||++.++.
T Consensus 24 ~~~i~G~nGsGKStll~al~~ 44 (197)
T cd03278 24 LTAIVGPNGSGKSNIIDAIRW 44 (197)
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999999874
No 416
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=95.55 E-value=0.0087 Score=54.28 Aligned_cols=23 Identities=35% Similarity=0.481 Sum_probs=21.1
Q ss_pred EEEEeccCCCchhHHHHHHHHhh
Q 009306 213 KLGIWGIGGIGKTTIAGAIFNKI 235 (538)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~~ 235 (538)
+|+|.|.+|+||||||+.++..+
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999999876
No 417
>PRK10867 signal recognition particle protein; Provisional
Probab=95.55 E-value=0.055 Score=55.76 Aligned_cols=29 Identities=28% Similarity=0.407 Sum_probs=25.2
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhhccc
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKISRH 238 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 238 (538)
...++.++|++|+||||++..++..++..
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~ 127 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKK 127 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHh
Confidence 36789999999999999999999877665
No 418
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=95.54 E-value=0.061 Score=57.78 Aligned_cols=26 Identities=23% Similarity=0.296 Sum_probs=22.1
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhh
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKI 235 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (538)
....++|+|+.|+|||||++.+..-+
T Consensus 360 ~G~~vaIvG~SGsGKSTLl~lL~g~~ 385 (529)
T TIGR02868 360 PGERVAILGPSGSGKSTLLMLLTGLL 385 (529)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45579999999999999999998643
No 419
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.54 E-value=0.012 Score=53.55 Aligned_cols=33 Identities=21% Similarity=0.076 Sum_probs=27.3
Q ss_pred EEEeccCCCchhHHHHHHHHhhccceeeEEEEe
Q 009306 214 LGIWGIGGIGKTTIAGAIFNKISRHFSGSYFAR 246 (538)
Q Consensus 214 v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 246 (538)
+.|.|++|+|||+|+.+++......-..++|+.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s 34 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVT 34 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 678999999999999999887665556677765
No 420
>PRK13764 ATPase; Provisional
Probab=95.54 E-value=0.03 Score=59.80 Aligned_cols=85 Identities=15% Similarity=0.147 Sum_probs=49.4
Q ss_pred eEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhhcCChHHHHHHHHHHHhcCCCCCCchhhcHHHHHHHhcC
Q 009306 212 YKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEETCRLGDLRQQLLSTLLNDGNVKNFLNTDLNFQSRRLTR 291 (538)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~ 291 (538)
..+.|+|++|+||||++++++..+..+...+..+.+..+...... ..++. ....+... .....|..
T Consensus 258 ~~ILIsG~TGSGKTTll~AL~~~i~~~~riV~TiEDp~El~~~~~--------i~q~~---~~~~~~~~---~~~~lLR~ 323 (602)
T PRK13764 258 EGILIAGAPGAGKSTFAQALAEFYADMGKIVKTMESPRDLQVPPE--------ITQYS---KLEGSMEE---TADILLLV 323 (602)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEECCCccccCCCc--------ceEEe---eccccHHH---HHHHHHhh
Confidence 458999999999999999999877654333334432222111100 00000 00011111 12223567
Q ss_pred CCeEEEEecCCChHHHHHH
Q 009306 292 KKVLIVFDDVDHPRQIKIL 310 (538)
Q Consensus 292 k~~LlVlDdv~~~~~~~~l 310 (538)
+|=.|++|++.+.+.++.+
T Consensus 324 rPD~IivGEiRd~Et~~~~ 342 (602)
T PRK13764 324 RPDYTIYDEMRKTEDFKIF 342 (602)
T ss_pred CCCEEEECCCCCHHHHHHH
Confidence 8899999999988887765
No 421
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=95.53 E-value=0.011 Score=53.56 Aligned_cols=25 Identities=20% Similarity=0.264 Sum_probs=22.0
Q ss_pred eEEEEeccCCCchhHHHHHHHHhhc
Q 009306 212 YKLGIWGIGGIGKTTIAGAIFNKIS 236 (538)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (538)
.+++|+|++|+|||||++.++..+.
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3689999999999999999988754
No 422
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=95.53 E-value=0.075 Score=49.55 Aligned_cols=26 Identities=31% Similarity=0.348 Sum_probs=22.5
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhh
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKI 235 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (538)
....++|.|+.|.|||||++.++...
T Consensus 23 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 48 (213)
T TIGR01277 23 DGEIVAIMGPSGAGKSTLLNLIAGFI 48 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 34579999999999999999998753
No 423
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=95.53 E-value=0.012 Score=65.46 Aligned_cols=24 Identities=25% Similarity=0.023 Sum_probs=21.1
Q ss_pred CceEEEEeccCCCchhHHHHHHHH
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFN 233 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~ 233 (538)
+.+++.|+|+.+.||||+.+.++-
T Consensus 326 ~~~~~iITGpN~gGKTt~lktigl 349 (782)
T PRK00409 326 DKTVLVITGPNTGGKTVTLKTLGL 349 (782)
T ss_pred CceEEEEECCCCCCcHHHHHHHHH
Confidence 457899999999999999998865
No 424
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.53 E-value=0.24 Score=50.44 Aligned_cols=29 Identities=38% Similarity=0.474 Sum_probs=24.3
Q ss_pred ceEEEEeccCCCchhHHHHHHHHhhccce
Q 009306 211 VYKLGIWGIGGIGKTTIAGAIFNKISRHF 239 (538)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f 239 (538)
++-+.+.|++|.|||.|+++++.+....|
T Consensus 186 ~rglLLfGPpgtGKtmL~~aiAsE~~atf 214 (428)
T KOG0740|consen 186 VRGLLLFGPPGTGKTMLAKAIATESGATF 214 (428)
T ss_pred cchhheecCCCCchHHHHHHHHhhhcceE
Confidence 45578999999999999999999865543
No 425
>PRK00279 adk adenylate kinase; Reviewed
Probab=95.52 E-value=0.084 Score=49.31 Aligned_cols=24 Identities=38% Similarity=0.367 Sum_probs=20.9
Q ss_pred EEEEeccCCCchhHHHHHHHHhhc
Q 009306 213 KLGIWGIGGIGKTTIAGAIFNKIS 236 (538)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~~~ 236 (538)
.|.|.|++|+||||+|+.++.++.
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~ 25 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYG 25 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 388999999999999999987653
No 426
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=95.50 E-value=0.036 Score=47.43 Aligned_cols=29 Identities=31% Similarity=0.589 Sum_probs=25.1
Q ss_pred ceEEEEeccCCCchhHHHHHHHHhhccce
Q 009306 211 VYKLGIWGIGGIGKTTIAGAIFNKISRHF 239 (538)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f 239 (538)
.-++.|.|.+|.||||+++++.+++.-.|
T Consensus 12 k~~i~vmGvsGsGKSTigk~L~~~l~~~F 40 (191)
T KOG3354|consen 12 KYVIVVMGVSGSGKSTIGKALSEELGLKF 40 (191)
T ss_pred ceeEEEEecCCCChhhHHHHHHHHhCCcc
Confidence 34789999999999999999999987554
No 427
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=95.49 E-value=0.058 Score=58.05 Aligned_cols=27 Identities=26% Similarity=0.186 Sum_probs=22.6
Q ss_pred ceEEEEeccCCCchhHHHHHHHHhhcc
Q 009306 211 VYKLGIWGIGGIGKTTIAGAIFNKISR 237 (538)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~~ 237 (538)
.++..|+|.+|.||||++..+...+..
T Consensus 160 ~~~~vitGgpGTGKTt~v~~ll~~l~~ 186 (586)
T TIGR01447 160 SNFSLITGGPGTGKTTTVARLLLALVK 186 (586)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 357999999999999999988876543
No 428
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=95.48 E-value=0.011 Score=51.37 Aligned_cols=24 Identities=33% Similarity=0.473 Sum_probs=21.4
Q ss_pred EEEEeccCCCchhHHHHHHHHhhc
Q 009306 213 KLGIWGIGGIGKTTIAGAIFNKIS 236 (538)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~~~ 236 (538)
+|.|.|++|+||||+|+.++.++.
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~ 24 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLG 24 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999998753
No 429
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=95.48 E-value=0.075 Score=57.40 Aligned_cols=27 Identities=26% Similarity=0.210 Sum_probs=22.7
Q ss_pred ceEEEEeccCCCchhHHHHHHHHhhcc
Q 009306 211 VYKLGIWGIGGIGKTTIAGAIFNKISR 237 (538)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~~ 237 (538)
.++..|+|.+|.||||+++.+...+..
T Consensus 167 ~~~~vItGgpGTGKTt~v~~ll~~l~~ 193 (615)
T PRK10875 167 RRISVISGGPGTGKTTTVAKLLAALIQ 193 (615)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 457999999999999999988876543
No 430
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=95.47 E-value=0.2 Score=46.39 Aligned_cols=25 Identities=40% Similarity=0.497 Sum_probs=21.7
Q ss_pred CceEEEEeccCCCchhHHHHHHHHh
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNK 234 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~ 234 (538)
...+++|.|+.|.|||||++.++..
T Consensus 33 ~G~~~~i~G~nGsGKSTLl~~l~Gl 57 (207)
T cd03369 33 AGEKIGIVGRTGAGKSTLILALFRF 57 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3457999999999999999999864
No 431
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.46 E-value=0.038 Score=56.83 Aligned_cols=102 Identities=14% Similarity=0.033 Sum_probs=61.6
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhhcCChHHHHHHHHHHHhcCCCCCCchhhcHHHHHHHh
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEETCRLGDLRQQLLSTLLNDGNVKNFLNTDLNFQSRRL 289 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~~l 289 (538)
...++.++||.|+||||....+...+......++-+.+.-+.. -.++.. ....+..--.....++..|
T Consensus 257 p~GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~TiEDPVE~~-~~gI~Q-----------~qVN~k~gltfa~~LRa~L 324 (500)
T COG2804 257 PQGLILVTGPTGSGKTTTLYAALSELNTPERNIITIEDPVEYQ-LPGINQ-----------VQVNPKIGLTFARALRAIL 324 (500)
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHhcCCCceEEEeeCCeeee-cCCcce-----------eecccccCCCHHHHHHHHh
Confidence 4568999999999999999998887766555444444221110 001100 0000011112345677788
Q ss_pred cCCCeEEEEecCCChHHHHHHhcCcCCCCCCCEEEEec
Q 009306 290 TRKKVLIVFDDVDHPRQIKILVGRLDLFASGSRIIITT 327 (538)
Q Consensus 290 ~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~~~~iiiTt 327 (538)
++-|=+|.+.++.|.+..+....+. -.++.++||
T Consensus 325 RqDPDvImVGEIRD~ETAeiavqAa----lTGHLVlST 358 (500)
T COG2804 325 RQDPDVIMVGEIRDLETAEIAVQAA----LTGHLVLST 358 (500)
T ss_pred ccCCCeEEEeccCCHHHHHHHHHHH----hcCCeEeee
Confidence 8999999999998887766555431 234556555
No 432
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=95.46 E-value=0.035 Score=54.80 Aligned_cols=52 Identities=13% Similarity=0.233 Sum_probs=43.7
Q ss_pred CCCceeccchhHHHHHhhhc----CCCCceEEEEeccCCCchhHHHHHHHHhhccc
Q 009306 187 NEDLVGVRLPMKEIESLLRT----GSTNVYKLGIWGIGGIGKTTIAGAIFNKISRH 238 (538)
Q Consensus 187 ~~~~vGR~~~l~~l~~~L~~----~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 238 (538)
...|+|.+..+.++.+.+.. .....+++.+.||.|.|||||+..+.+-+...
T Consensus 60 ~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y 115 (358)
T PF08298_consen 60 EDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGLEEY 115 (358)
T ss_pred cccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHhheE
Confidence 35799999999999998875 23457899999999999999999988876554
No 433
>PRK14738 gmk guanylate kinase; Provisional
Probab=95.46 E-value=0.011 Score=54.77 Aligned_cols=29 Identities=17% Similarity=0.297 Sum_probs=24.0
Q ss_pred cCCCCceEEEEeccCCCchhHHHHHHHHh
Q 009306 206 TGSTNVYKLGIWGIGGIGKTTIAGAIFNK 234 (538)
Q Consensus 206 ~~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 234 (538)
.+....+.++|+|++|+|||||+..+...
T Consensus 8 ~~~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 8 NKPAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 34456788999999999999999998754
No 434
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=95.46 E-value=0.024 Score=53.36 Aligned_cols=48 Identities=17% Similarity=0.179 Sum_probs=35.7
Q ss_pred HHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEe
Q 009306 199 EIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFAR 246 (538)
Q Consensus 199 ~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 246 (538)
.|.++|..+-....++.|.|.+|+|||++|.+++.....+-..++|+.
T Consensus 4 ~LD~~l~gGi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s 51 (224)
T TIGR03880 4 GLDEMLGGGFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYIS 51 (224)
T ss_pred hhHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 455566555456778999999999999999999887544445566665
No 435
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=95.46 E-value=0.0098 Score=54.82 Aligned_cols=23 Identities=43% Similarity=0.648 Sum_probs=21.0
Q ss_pred EEEEeccCCCchhHHHHHHHHhh
Q 009306 213 KLGIWGIGGIGKTTIAGAIFNKI 235 (538)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~~ 235 (538)
+++|.|++|+|||||++.+...+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999998876
No 436
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=95.46 E-value=0.07 Score=49.36 Aligned_cols=20 Identities=45% Similarity=0.395 Sum_probs=19.0
Q ss_pred EEEEeccCCCchhHHHHHHH
Q 009306 213 KLGIWGIGGIGKTTIAGAIF 232 (538)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~ 232 (538)
+++|.|+.|.|||||..+++
T Consensus 24 ~~~i~G~NGsGKTTLl~ai~ 43 (204)
T cd03240 24 LTLIVGQNGAGKTTIIEALK 43 (204)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 79999999999999999985
No 437
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=95.45 E-value=0.12 Score=48.47 Aligned_cols=25 Identities=36% Similarity=0.460 Sum_probs=21.7
Q ss_pred CceEEEEeccCCCchhHHHHHHHHh
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNK 234 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~ 234 (538)
...+++|.|+.|.|||||++.++..
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 53 (221)
T cd03244 29 PGEKVGIVGRTGSGKSSLLLALFRL 53 (221)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcC
Confidence 3457999999999999999999864
No 438
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=95.45 E-value=0.03 Score=56.81 Aligned_cols=52 Identities=21% Similarity=0.297 Sum_probs=36.9
Q ss_pred CCceeccchhHHHHHhhhc---------C---CCCceEEEEeccCCCchhHHHHHHHHhhccce
Q 009306 188 EDLVGVRLPMKEIESLLRT---------G---STNVYKLGIWGIGGIGKTTIAGAIFNKISRHF 239 (538)
Q Consensus 188 ~~~vGR~~~l~~l~~~L~~---------~---~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f 239 (538)
..++|.+...+.+...+.. + ......+.++|++|+|||+||+.++..+...|
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~f 78 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPF 78 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChh
Confidence 4577777777777655532 0 01135689999999999999999998765443
No 439
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=95.44 E-value=0.016 Score=49.97 Aligned_cols=35 Identities=20% Similarity=0.318 Sum_probs=26.2
Q ss_pred eEEEEeccCCCchhHHHHHHHHhhccc-eeeEEEEe
Q 009306 212 YKLGIWGIGGIGKTTIAGAIFNKISRH-FSGSYFAR 246 (538)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~ 246 (538)
+++.|+|+.|+|||||++.+.+.+..+ +...++..
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik~ 36 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRRGYRVAVIKH 36 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHcCCceEEEEE
Confidence 478999999999999999999988754 44443443
No 440
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=95.43 E-value=0.13 Score=48.75 Aligned_cols=26 Identities=19% Similarity=0.238 Sum_probs=22.5
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhh
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKI 235 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (538)
...+++|.|+.|.|||||++.++...
T Consensus 28 ~Ge~~~l~G~nGsGKSTLl~~i~G~~ 53 (238)
T cd03249 28 PGKTVALVGSSGCGKSTVVSLLERFY 53 (238)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHhccC
Confidence 34579999999999999999998754
No 441
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.43 E-value=0.014 Score=54.76 Aligned_cols=24 Identities=29% Similarity=-0.014 Sum_probs=21.2
Q ss_pred CceEEEEeccCCCchhHHHHHHHH
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFN 233 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~ 233 (538)
..+++.|+|+.|.||||+.+.+..
T Consensus 29 ~~~~~~l~G~n~~GKstll~~i~~ 52 (222)
T cd03285 29 KSRFLIITGPNMGGKSTYIRQIGV 52 (222)
T ss_pred CCeEEEEECCCCCChHHHHHHHHH
Confidence 467899999999999999998774
No 442
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=95.43 E-value=0.058 Score=58.70 Aligned_cols=26 Identities=27% Similarity=0.291 Sum_probs=22.3
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhh
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKI 235 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (538)
....++|+|+.|.|||||++.++..+
T Consensus 368 ~G~~~aIvG~sGsGKSTLl~ll~gl~ 393 (582)
T PRK11176 368 AGKTVALVGRSGSGKSTIANLLTRFY 393 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 34569999999999999999998744
No 443
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.41 E-value=0.14 Score=46.73 Aligned_cols=49 Identities=16% Similarity=0.100 Sum_probs=36.8
Q ss_pred HHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEe
Q 009306 198 KEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFAR 246 (538)
Q Consensus 198 ~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 246 (538)
++|...|..+-+...++.|-|..|.|||.|.+.+++-.-..-..+.++.
T Consensus 15 delDkrLGGGiP~GsL~lIEGd~~tGKSvLsqr~~YG~L~~g~~v~yvs 63 (235)
T COG2874 15 DELDKRLGGGIPVGSLILIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVS 63 (235)
T ss_pred HHHHhhccCCCccCeEEEEECCCCccHHHHHHHHHHHHHhCCceEEEEE
Confidence 3566666655566788999999999999999999987655544555554
No 444
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=95.41 E-value=0.13 Score=49.94 Aligned_cols=27 Identities=26% Similarity=0.474 Sum_probs=23.0
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhhc
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKIS 236 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (538)
....++|+|+.|.|||||++.++..+.
T Consensus 29 ~Ge~~~IvG~nGsGKSTLl~~L~gl~~ 55 (275)
T cd03289 29 PGQRVGLLGRTGSGKSTLLSAFLRLLN 55 (275)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhhcC
Confidence 345799999999999999999987653
No 445
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=95.41 E-value=0.015 Score=53.94 Aligned_cols=25 Identities=36% Similarity=0.416 Sum_probs=21.6
Q ss_pred CceEEEEeccCCCchhHHHHHHHHh
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNK 234 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~ 234 (538)
...+++|+|++|+|||||++.++--
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~Gl 56 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAGL 56 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhcc
Confidence 3457999999999999999999863
No 446
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.38 E-value=0.015 Score=56.39 Aligned_cols=27 Identities=19% Similarity=0.297 Sum_probs=22.6
Q ss_pred ceEEEEeccCCCchhHHHHHHHHhhcc
Q 009306 211 VYKLGIWGIGGIGKTTIAGAIFNKISR 237 (538)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~~ 237 (538)
.+.+.++|++|+|||++++.+...+..
T Consensus 33 ~~pvLl~G~~GtGKT~li~~~l~~l~~ 59 (272)
T PF12775_consen 33 GRPVLLVGPSGTGKTSLIQNFLSSLDS 59 (272)
T ss_dssp TEEEEEESSTTSSHHHHHHHHHHCSTT
T ss_pred CCcEEEECCCCCchhHHHHhhhccCCc
Confidence 456899999999999999998876543
No 447
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=95.37 E-value=0.021 Score=56.28 Aligned_cols=48 Identities=29% Similarity=0.340 Sum_probs=34.8
Q ss_pred ceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhhcCChHHHHH
Q 009306 211 VYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEETCRLGDLRQ 262 (538)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~ 262 (538)
.+++.++|.||+||||+|.+.+-........+.-++ .++.+++.+.+.
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvS----tDPAhsL~d~f~ 49 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVS----TDPAHSLGDVFD 49 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEE----eCCCCchHhhhc
Confidence 468899999999999999998888777665555554 444455555443
No 448
>PRK15453 phosphoribulokinase; Provisional
Probab=95.37 E-value=0.02 Score=54.85 Aligned_cols=28 Identities=25% Similarity=0.294 Sum_probs=24.4
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhhcc
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKISR 237 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 237 (538)
...+|+|+|.+|+||||+|+.+...+..
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if~~ 31 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIFRR 31 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4578999999999999999999977654
No 449
>PRK08506 replicative DNA helicase; Provisional
Probab=95.35 E-value=0.17 Score=53.29 Aligned_cols=73 Identities=19% Similarity=0.155 Sum_probs=47.2
Q ss_pred ceeccchhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhhcCChHHHHHHHHHHHh
Q 009306 190 LVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEETCRLGDLRQQLLSTLL 269 (538)
Q Consensus 190 ~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~ 269 (538)
..|-..-+..|..++ .+-....++.|.|.+|+|||++|..++.....+-..++|++ -.-....+...+++...
T Consensus 172 ~~Gi~TG~~~LD~~~-~G~~~G~LivIaarpg~GKT~fal~ia~~~~~~g~~V~~fS------lEMs~~ql~~Rlla~~s 244 (472)
T PRK08506 172 IIGLDTGFVELNKMT-KGFNKGDLIIIAARPSMGKTTLCLNMALKALNQDKGVAFFS------LEMPAEQLMLRMLSAKT 244 (472)
T ss_pred CCcccCChHHHHhhc-CCCCCCceEEEEcCCCCChHHHHHHHHHHHHhcCCcEEEEe------CcCCHHHHHHHHHHHhc
Confidence 445555566666654 34445668999999999999999999987654433455544 12345556666665443
No 450
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=95.34 E-value=0.026 Score=56.54 Aligned_cols=53 Identities=23% Similarity=0.213 Sum_probs=40.8
Q ss_pred CCceeccchhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhccceeeEEE
Q 009306 188 EDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYF 244 (538)
Q Consensus 188 ~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~ 244 (538)
..++|++..+..+...+..+. .+.+.|++|+|||+||+.++..+...|..+.+
T Consensus 24 ~~~~g~~~~~~~~l~a~~~~~----~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~ 76 (329)
T COG0714 24 KVVVGDEEVIELALLALLAGG----HVLLEGPPGVGKTLLARALARALGLPFVRIQC 76 (329)
T ss_pred CeeeccHHHHHHHHHHHHcCC----CEEEECCCCccHHHHHHHHHHHhCCCeEEEec
Confidence 448898888888777666443 38999999999999999999988755543333
No 451
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=95.33 E-value=0.032 Score=60.38 Aligned_cols=56 Identities=14% Similarity=0.238 Sum_probs=42.5
Q ss_pred CCCceeccchhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhccc-eeeEEEEe
Q 009306 187 NEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRH-FSGSYFAR 246 (538)
Q Consensus 187 ~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~ 246 (538)
.+.++|.+..++.+...+..+ +.+.++|++|+||||+|+.+++.+... |...+++.
T Consensus 17 ~~~viG~~~a~~~l~~a~~~~----~~~ll~G~pG~GKT~la~~la~~l~~~~~~~~~~~~ 73 (608)
T TIGR00764 17 IDQVIGQEEAVEIIKKAAKQK----RNVLLIGEPGVGKSMLAKAMAELLPDEELEDILVYP 73 (608)
T ss_pred HhhccCHHHHHHHHHHHHHcC----CCEEEECCCCCCHHHHHHHHHHHcCchhheeEEEEe
Confidence 367899998888888777643 247799999999999999999987654 33344444
No 452
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=95.33 E-value=0.025 Score=50.44 Aligned_cols=29 Identities=24% Similarity=0.300 Sum_probs=25.3
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhhccc
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKISRH 238 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 238 (538)
..++++|+|+.|+|||||++.+...+..+
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~~ 33 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCAR 33 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhhc
Confidence 45689999999999999999999887653
No 453
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=95.32 E-value=0.015 Score=51.06 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=20.8
Q ss_pred EEEeccCCCchhHHHHHHHHhhc
Q 009306 214 LGIWGIGGIGKTTIAGAIFNKIS 236 (538)
Q Consensus 214 v~I~G~~GiGKTtLa~~~~~~~~ 236 (538)
|.|+|++|+||||+|+.++..+.
T Consensus 2 i~l~G~~GsGKstla~~la~~l~ 24 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALG 24 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhC
Confidence 78999999999999999998763
No 454
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=95.32 E-value=0.053 Score=58.38 Aligned_cols=100 Identities=13% Similarity=0.030 Sum_probs=56.5
Q ss_pred hHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhhcCChHHHHHHHHHHHhcCCCCCC
Q 009306 197 MKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEETCRLGDLRQQLLSTLLNDGNVKN 276 (538)
Q Consensus 197 l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~ 276 (538)
++.+.+++.. ....|.|+|+.|+||||+...+...+...-...+-+.+.-+ ..+..+ .++.-. ..
T Consensus 305 ~~~l~~~~~~---~~Glilv~G~tGSGKTTtl~a~l~~~~~~~~~i~tiEdpvE----~~~~~~-----~q~~v~---~~ 369 (564)
T TIGR02538 305 KALFLEAIHK---PQGMVLVTGPTGSGKTVSLYTALNILNTEEVNISTAEDPVE----INLPGI-----NQVNVN---PK 369 (564)
T ss_pred HHHHHHHHHh---cCCeEEEECCCCCCHHHHHHHHHHhhCCCCceEEEecCCce----ecCCCc-----eEEEec---cc
Confidence 4445555542 34579999999999999988877765332111222221111 111000 010000 01
Q ss_pred chhhcHHHHHHHhcCCCeEEEEecCCChHHHHHHh
Q 009306 277 FLNTDLNFQSRRLTRKKVLIVFDDVDHPRQIKILV 311 (538)
Q Consensus 277 ~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~ 311 (538)
.-......++..|+..|=.|++.++.+.+.....+
T Consensus 370 ~g~~~~~~l~~~LR~dPDvI~vGEiRd~eta~~a~ 404 (564)
T TIGR02538 370 IGLTFAAALRSFLRQDPDIIMVGEIRDLETAEIAI 404 (564)
T ss_pred cCCCHHHHHHHHhccCCCEEEeCCCCCHHHHHHHH
Confidence 11234566778888999999999999888766444
No 455
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=95.30 E-value=0.027 Score=60.39 Aligned_cols=50 Identities=20% Similarity=0.283 Sum_probs=38.2
Q ss_pred CCceeccchhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhcc
Q 009306 188 EDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISR 237 (538)
Q Consensus 188 ~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 237 (538)
+..+-|....+.|.+..........+|.|+|++|+||||+|+.++.++..
T Consensus 369 P~~f~rpeV~~iL~~~~~~r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~ 418 (568)
T PRK05537 369 PEWFSFPEVVAELRRTYPPRHKQGFTVFFTGLSGAGKSTIAKALMVKLME 418 (568)
T ss_pred ChhhcHHHHHHHHHHHhccccCCCeEEEEECCCCChHHHHHHHHHHHhhh
Confidence 44556666666666666554455668999999999999999999998764
No 456
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.30 E-value=0.2 Score=47.27 Aligned_cols=26 Identities=27% Similarity=0.288 Sum_probs=22.4
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhh
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKI 235 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (538)
...+++|.|+.|.|||||.+.++...
T Consensus 28 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 53 (229)
T cd03254 28 PGETVAIVGPTGAGKTTLINLLMRFY 53 (229)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 34579999999999999999998754
No 457
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=95.29 E-value=0.041 Score=50.74 Aligned_cols=28 Identities=25% Similarity=0.330 Sum_probs=21.8
Q ss_pred CCceEEEEeccCCCchhHHHHHHHHhhc
Q 009306 209 TNVYKLGIWGIGGIGKTTIAGAIFNKIS 236 (538)
Q Consensus 209 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (538)
....++.|.|.+|.||||++..+...+.
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~~ 40 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLARQLLEEFG 40 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHHHHHHHT-
T ss_pred cCCEEEEEeCCCCCCHHHHHHHhhhhcc
Confidence 4567888899999999999999888763
No 458
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=95.29 E-value=0.2 Score=46.25 Aligned_cols=26 Identities=23% Similarity=0.364 Sum_probs=22.5
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhh
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKI 235 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (538)
...+++|.|+.|.|||||++.++...
T Consensus 30 ~G~~~~i~G~nG~GKSTLl~~i~G~~ 55 (204)
T cd03250 30 KGELVAIVGPVGSGKSSLLSALLGEL 55 (204)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcC
Confidence 45579999999999999999998754
No 459
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=95.29 E-value=0.02 Score=57.02 Aligned_cols=96 Identities=18% Similarity=0.120 Sum_probs=53.1
Q ss_pred ceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhhcCChHHHHHHHHHHHhcCCCCCCchhhcHHHHHHHhc
Q 009306 211 VYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEETCRLGDLRQQLLSTLLNDGNVKNFLNTDLNFQSRRLT 290 (538)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~ 290 (538)
...+.|+|+.|+||||+++++...+.... .++-+.+..+....... ... .+ ...........-.....++..|+
T Consensus 160 ~~nili~G~tgSGKTTll~aL~~~ip~~~-ri~tiEd~~El~l~~~~-n~~-~~---~~~~~~~~~~~~~~~~ll~~~LR 233 (332)
T PRK13900 160 KKNIIISGGTSTGKTTFTNAALREIPAIE-RLITVEDAREIVLSNHP-NRV-HL---LASKGGQGRAKVTTQDLIEACLR 233 (332)
T ss_pred CCcEEEECCCCCCHHHHHHHHHhhCCCCC-eEEEecCCCccccccCC-CEE-EE---EecCCCCCcCcCcHHHHHHHHhc
Confidence 34599999999999999999998775542 22223222111100000 000 00 00000001111123556777788
Q ss_pred CCCeEEEEecCCChHHHHHHhc
Q 009306 291 RKKVLIVFDDVDHPRQIKILVG 312 (538)
Q Consensus 291 ~k~~LlVlDdv~~~~~~~~l~~ 312 (538)
..|=.||++++.+.+.+..+..
T Consensus 234 ~~PD~IivGEiR~~ea~~~l~a 255 (332)
T PRK13900 234 LRPDRIIVGELRGAEAFSFLRA 255 (332)
T ss_pred cCCCeEEEEecCCHHHHHHHHH
Confidence 8999999999988776655443
No 460
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=95.29 E-value=0.013 Score=51.25 Aligned_cols=20 Identities=35% Similarity=0.526 Sum_probs=18.6
Q ss_pred EEEEeccCCCchhHHHHHHH
Q 009306 213 KLGIWGIGGIGKTTIAGAIF 232 (538)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~ 232 (538)
.|+|+|.||+||||++..+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 48999999999999999887
No 461
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=95.28 E-value=0.015 Score=53.67 Aligned_cols=21 Identities=29% Similarity=0.093 Sum_probs=19.9
Q ss_pred eEEEEeccCCCchhHHHHHHH
Q 009306 212 YKLGIWGIGGIGKTTIAGAIF 232 (538)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~ 232 (538)
++++|+|+.|.|||||.+.+.
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 689999999999999999988
No 462
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.28 E-value=0.088 Score=49.82 Aligned_cols=26 Identities=27% Similarity=0.192 Sum_probs=22.5
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhh
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKI 235 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (538)
....++|.|+.|.|||||.+.++...
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~g~~ 50 (232)
T cd03300 25 EGEFFTLLGPSGCGKTTLLRLIAGFE 50 (232)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34579999999999999999998754
No 463
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=95.28 E-value=0.032 Score=55.42 Aligned_cols=40 Identities=28% Similarity=0.437 Sum_probs=29.7
Q ss_pred HHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhccc
Q 009306 199 EIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRH 238 (538)
Q Consensus 199 ~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 238 (538)
.+.+.+....+...+|+|+|++|+|||||+..+...+...
T Consensus 44 ~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~ 83 (332)
T PRK09435 44 ELLDALLPHTGNALRIGITGVPGVGKSTFIEALGMHLIEQ 83 (332)
T ss_pred HHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 3444333323456789999999999999999998877654
No 464
>PRK05439 pantothenate kinase; Provisional
Probab=95.28 E-value=0.019 Score=56.28 Aligned_cols=29 Identities=31% Similarity=0.402 Sum_probs=24.8
Q ss_pred CCceEEEEeccCCCchhHHHHHHHHhhcc
Q 009306 209 TNVYKLGIWGIGGIGKTTIAGAIFNKISR 237 (538)
Q Consensus 209 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 237 (538)
...-+|+|.|.+|+||||+|+.+...+..
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l~~ 112 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALLSR 112 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 45678999999999999999999886643
No 465
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=95.27 E-value=0.053 Score=55.55 Aligned_cols=124 Identities=21% Similarity=0.184 Sum_probs=66.0
Q ss_pred ceEEEEeccCCCchhHHHHHHHHhhccceee-----EEEEeehhhhhh-----------------cCChHHHHHHHHHHH
Q 009306 211 VYKLGIWGIGGIGKTTIAGAIFNKISRHFSG-----SYFARNVREAEE-----------------TCRLGDLRQQLLSTL 268 (538)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~-----~~~~~~~~~~~~-----------------~~~~~~l~~~l~~~l 268 (538)
.+..+++|..|+|||||.+++++.....|+. .+++........ ...+..+...++..+
T Consensus 106 GrRYGLvGrNG~GKsTLLRaia~~~v~~f~veqE~~g~~t~~~~~~l~~D~~~~dfl~~e~~l~~~~~l~ei~~~~L~gl 185 (582)
T KOG0062|consen 106 GRRYGLVGRNGIGKSTLLRAIANGQVSGFHVEQEVRGDDTEALQSVLESDTERLDFLAEEKELLAGLTLEEIYDKILAGL 185 (582)
T ss_pred ccccceeCCCCCcHHHHHHHHHhcCcCccCchhheeccchHHHhhhhhccHHHHHHHHhhhhhhccchHHHHHHHHHHhC
Confidence 4568999999999999999999844444432 222221111000 001222233233333
Q ss_pred hcCCCCC-------CchhhcHHHHHHHhcCCCeEEEEecCCChH---HHHHHhcCcCCCCCCCEEEEeccchhhhhhc
Q 009306 269 LNDGNVK-------NFLNTDLNFQSRRLTRKKVLIVFDDVDHPR---QIKILVGRLDLFASGSRIIITTRDRQVLANC 336 (538)
Q Consensus 269 ~~~~~~~-------~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~---~~~~l~~~l~~~~~~~~iiiTtR~~~~~~~~ 336 (538)
+-..+.. ..--...-.+.+.+-.++=||.||+--+.- .+..+...+. ..+..+||.|-+...+...
T Consensus 186 GFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~--t~~~T~liVSHDr~FLn~V 261 (582)
T KOG0062|consen 186 GFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQ--TWKITSLIVSHDRNFLNTV 261 (582)
T ss_pred CCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecCCcccchhHHHHHHHHHHh--hCCceEEEEeccHHHHHHH
Confidence 3221111 111123345556667789999999875433 3333333333 2236678888887666543
No 466
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=95.27 E-value=0.023 Score=50.50 Aligned_cols=25 Identities=24% Similarity=0.376 Sum_probs=22.8
Q ss_pred ceEEEEeccCCCchhHHHHHHHHhh
Q 009306 211 VYKLGIWGIGGIGKTTIAGAIFNKI 235 (538)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (538)
..+++|.||+|+|||||++.+..+.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 4579999999999999999999876
No 467
>PHA02244 ATPase-like protein
Probab=95.27 E-value=0.015 Score=57.85 Aligned_cols=47 Identities=17% Similarity=0.208 Sum_probs=32.0
Q ss_pred CCceeccchhHH----HHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhccc
Q 009306 188 EDLVGVRLPMKE----IESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRH 238 (538)
Q Consensus 188 ~~~vGR~~~l~~----l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 238 (538)
..++|....+.. +..++..+ ..+.|+|++|+|||+||++++......
T Consensus 96 ~~~ig~sp~~~~~~~ri~r~l~~~----~PVLL~GppGtGKTtLA~aLA~~lg~p 146 (383)
T PHA02244 96 TTKIASNPTFHYETADIAKIVNAN----IPVFLKGGAGSGKNHIAEQIAEALDLD 146 (383)
T ss_pred CcccCCCHHHHHHHHHHHHHHhcC----CCEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 456666555543 33344322 238889999999999999999875433
No 468
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=95.26 E-value=0.018 Score=56.75 Aligned_cols=35 Identities=31% Similarity=0.377 Sum_probs=27.6
Q ss_pred eEEEEeccCCCchhHHHHHHHHhhccceeeEEEEe
Q 009306 212 YKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFAR 246 (538)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 246 (538)
+++.+.|-||+||||+|.+++-....+...+..++
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS 36 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALARRGKRTLLVS 36 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEE
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEee
Confidence 57899999999999999999987776654455554
No 469
>COG5635 Predicted NTPase (NACHT family) [Signal transduction mechanisms]
Probab=95.24 E-value=0.038 Score=62.44 Aligned_cols=225 Identities=18% Similarity=0.163 Sum_probs=108.8
Q ss_pred EEEEeccCCCchhHHHHHHHHhhccce----eeEEEEeeh--hhhhhcCChHHHHHHHHHHHhcCCCCCCchhhcHHHHH
Q 009306 213 KLGIWGIGGIGKTTIAGAIFNKISRHF----SGSYFARNV--REAEETCRLGDLRQQLLSTLLNDGNVKNFLNTDLNFQS 286 (538)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~~~~~f----~~~~~~~~~--~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~ 286 (538)
-+.|+|.+|.||||+...++-...... +..+++..- ........-..+..-+...+.... ..........
T Consensus 224 ~~~Ilg~pGsGKTtfl~~lA~~~~~~~~~~~~vpi~~~l~~~~~~~~~~~q~~~~~~l~~~~~~~~----~~~~~~~~~~ 299 (824)
T COG5635 224 KLLILGAPGSGKTTFLQRLALWLAQRTLEPEDVPIFLLLNAFALARKFEKQLSLIDYLAEELFSQG----IAKQLIEAHQ 299 (824)
T ss_pred heeeecCCCCCceehHHHHHHHhccCcCCcccCceeeechhHHHhhhhHhhccHHHHHHHHHhccC----CcchhhHHHH
Confidence 589999999999999998887544332 223333311 111111000022222222222221 1222222224
Q ss_pred HHhcCCCeEEEEecCCChHH------HHHHhcCcCCCCCCCEEEEeccchhhhhhcCCCeeEEcCCCCHHHHHHHHHh--
Q 009306 287 RRLTRKKVLIVFDDVDHPRQ------IKILVGRLDLFASGSRIIITTRDRQVLANCGVDEVYQMEELVHDDALRLFSR-- 358 (538)
Q Consensus 287 ~~l~~k~~LlVlDdv~~~~~------~~~l~~~l~~~~~~~~iiiTtR~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~-- 358 (538)
+.+...++++++|.+|.... +..+-..+++ -+..++|+|+|....-........+++..+.++...+....
T Consensus 300 e~l~~g~~llLlDGlDe~~~~~~~~~~~~i~~f~~~-~~~~~~iltcR~~~~~~~~~~f~~~ei~~~~~~~i~~~~~~~~ 378 (824)
T COG5635 300 ELLKTGKLLLLLDGLDELEPKNQRALIREINKFLQE-YPDAQVLLTCRPDTYKEEFKGFAVFEIYKFLDLQINQFILYQW 378 (824)
T ss_pred HHHhccchhhHhhccchhhhhhHHHHHHHHHHHhhh-ccCCeEEEEeccchhhhhhhhhhhccchhhhHHHHHHHHHHHH
Confidence 66788999999999976421 2222222222 34788999998775433333334555666655544433331
Q ss_pred ------hhcCCCCCC-CchH-H---HHHHHHHHhcCCcHHHHHHHHHhc------CCCHHHHHHHHHHhhcCCCCcHHHH
Q 009306 359 ------HAFGGDHPH-ESHT-E---LACKTIKYARGVPLALEVLGRYLY------GKRREVWENAKSKWETAPPKGIQDA 421 (538)
Q Consensus 359 ------~~~~~~~~~-~~~~-~---~~~~i~~~~~G~PLal~~~~~~L~------~~~~~~~~~~l~~l~~~~~~~v~~~ 421 (538)
..++..... ..+. . -..+..+.....|+.|.+.+..-. ....+-++..++.+-...+..-...
T Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ik~l~~~p~~L~l~c~~~~~~~~lP~~~~~ly~~~~~~~~~~~d~~~~~~ 458 (824)
T COG5635 379 LDAFIEDWFGDSRLLAKKLLERLKLPENRRIKELALTPLLLALECLIWQAQGDLPESRAELYEQAVDALLGREDETRGIK 458 (824)
T ss_pred HHHHHHhhhcccchhhHHHHHHhcchhhHHHHHhccCHHHHHHHHHhhhHHhhCCCCcHHHHHHHHHHHHhccchhhhhc
Confidence 111111111 0000 0 112334444888999988875443 2345666666665443332111112
Q ss_pred HHHhHhCCC-HHhHH-Hhhcccc
Q 009306 422 LKISYDGLD-DKEQN-IFLDIAC 442 (538)
Q Consensus 422 l~~s~~~L~-~~~k~-~l~~la~ 442 (538)
....|..+. +...+ ++..++.
T Consensus 459 ~~~~~~~~~~~~~~~~l~~~la~ 481 (824)
T COG5635 459 WSKTYAKLTTDQQDKWLLQLLAA 481 (824)
T ss_pred chhhhcccchHHHHHHHHHHHHH
Confidence 334444443 23333 5555543
No 470
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.21 E-value=0.059 Score=56.33 Aligned_cols=29 Identities=21% Similarity=0.273 Sum_probs=24.5
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhhccc
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKISRH 238 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 238 (538)
...+++|+|++|+||||++..++..+...
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~ 377 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQ 377 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 35789999999999999999998876544
No 471
>PRK13949 shikimate kinase; Provisional
Probab=95.21 E-value=0.017 Score=51.64 Aligned_cols=24 Identities=29% Similarity=0.463 Sum_probs=21.7
Q ss_pred EEEEeccCCCchhHHHHHHHHhhc
Q 009306 213 KLGIWGIGGIGKTTIAGAIFNKIS 236 (538)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~~~ 236 (538)
.|.|+|++|.||||+++.++..+.
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 489999999999999999998764
No 472
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=95.18 E-value=0.078 Score=52.47 Aligned_cols=87 Identities=17% Similarity=0.138 Sum_probs=50.5
Q ss_pred EEEEeccCCCchhHHHHHHHHhhccce--eeEEEEeehhhhhhc-CChHHHHHHHHHHHhcCCCCCCchhhcHHHHHHHh
Q 009306 213 KLGIWGIGGIGKTTIAGAIFNKISRHF--SGSYFARNVREAEET-CRLGDLRQQLLSTLLNDGNVKNFLNTDLNFQSRRL 289 (538)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~~~~~f--~~~~~~~~~~~~~~~-~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~~l 289 (538)
.+.|+|..|+||||+++++...+.... ...+-+.+..+.... ..... +. ....-.....++..|
T Consensus 146 nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El~~~~~n~v~--------l~-----~~~~~~~~~lv~~aL 212 (323)
T PRK13833 146 NIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQCAAENAVA--------LH-----TSDTVDMARLLKSTM 212 (323)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCcccccCCCCEEE--------ec-----cCCCcCHHHHHHHHh
Confidence 488999999999999999998764221 122222211111000 00000 00 011123445667778
Q ss_pred cCCCeEEEEecCCChHHHHHHhc
Q 009306 290 TRKKVLIVFDDVDHPRQIKILVG 312 (538)
Q Consensus 290 ~~k~~LlVlDdv~~~~~~~~l~~ 312 (538)
+..|-.||+.++.+.+.+..+..
T Consensus 213 R~~PD~IivGEiRg~ea~~~l~a 235 (323)
T PRK13833 213 RLRPDRIIVGEVRDGAALTLLKA 235 (323)
T ss_pred CCCCCEEEEeecCCHHHHHHHHH
Confidence 88999999999988776665443
No 473
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=95.17 E-value=0.13 Score=57.22 Aligned_cols=69 Identities=16% Similarity=0.071 Sum_probs=42.8
Q ss_pred chhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhhcCChHHHHHHHHHHHhcC
Q 009306 195 LPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEETCRLGDLRQQLLSTLLND 271 (538)
Q Consensus 195 ~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~ 271 (538)
....+|.+.+. ..+++.|.|+.|+||||-.-+++.+..-...+.+-+. ....-...++.+.+...++..
T Consensus 53 ~~~~~i~~ai~----~~~vvii~getGsGKTTqlP~~lle~g~~~~g~I~~t----QPRRlAArsvA~RvAeel~~~ 121 (845)
T COG1643 53 AVRDEILKAIE----QNQVVIIVGETGSGKTTQLPQFLLEEGLGIAGKIGCT----QPRRLAARSVAERVAEELGEK 121 (845)
T ss_pred HHHHHHHHHHH----hCCEEEEeCCCCCChHHHHHHHHHhhhcccCCeEEec----CchHHHHHHHHHHHHHHhCCC
Confidence 35556666665 4568999999999999998888876432223334433 122223445666666666553
No 474
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.16 E-value=0.1 Score=52.43 Aligned_cols=26 Identities=23% Similarity=0.325 Sum_probs=22.0
Q ss_pred ceEEEEeccCCCchhHHHHHHHHhhc
Q 009306 211 VYKLGIWGIGGIGKTTIAGAIFNKIS 236 (538)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (538)
.+++.++||.|+||||-...++.++.
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~ 228 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYV 228 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHH
Confidence 78999999999999977777777655
No 475
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.13 E-value=0.22 Score=45.43 Aligned_cols=42 Identities=19% Similarity=0.242 Sum_probs=28.0
Q ss_pred CCceeccchhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHH
Q 009306 188 EDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFN 233 (538)
Q Consensus 188 ~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~ 233 (538)
..++|-...++.+.- +-....+.++.||+|+||||+.+.+-.
T Consensus 14 ~~yYg~~~aL~~i~l----~i~~~~VTAlIGPSGcGKST~LR~lNR 55 (253)
T COG1117 14 NLYYGDKHALKDINL----DIPKNKVTALIGPSGCGKSTLLRCLNR 55 (253)
T ss_pred eEEECchhhhccCce----eccCCceEEEECCCCcCHHHHHHHHHh
Confidence 345664444433322 224567899999999999999986543
No 476
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=95.13 E-value=0.42 Score=48.05 Aligned_cols=24 Identities=29% Similarity=0.517 Sum_probs=20.8
Q ss_pred ceEEEEeccCCCchhHHHHHHHHh
Q 009306 211 VYKLGIWGIGGIGKTTIAGAIFNK 234 (538)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~ 234 (538)
-..|+|+||.|+|||||.+.+.-.
T Consensus 613 dSRiaIVGPNGVGKSTlLkLL~Gk 636 (807)
T KOG0066|consen 613 DSRIAIVGPNGVGKSTLLKLLIGK 636 (807)
T ss_pred cceeEEECCCCccHHHHHHHHhcC
Confidence 345999999999999999988864
No 477
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=95.12 E-value=0.023 Score=49.49 Aligned_cols=33 Identities=27% Similarity=0.276 Sum_probs=25.3
Q ss_pred eEEEEeccCCCchhHHHHHHHHhhccceeeEEE
Q 009306 212 YKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYF 244 (538)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~ 244 (538)
-.++|+||+|+|||||.+.++.-+...-....|
T Consensus 30 e~iaitGPSG~GKStllk~va~Lisp~~G~l~f 62 (223)
T COG4619 30 EFIAITGPSGCGKSTLLKIVASLISPTSGTLLF 62 (223)
T ss_pred ceEEEeCCCCccHHHHHHHHHhccCCCCceEEE
Confidence 359999999999999999999865544333333
No 478
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=95.12 E-value=0.11 Score=55.71 Aligned_cols=25 Identities=20% Similarity=0.335 Sum_probs=21.8
Q ss_pred CceEEEEeccCCCchhHHHHHHHHh
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNK 234 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~ 234 (538)
....++|+|+.|+|||||++.+...
T Consensus 347 ~G~~~~ivG~sGsGKSTL~~ll~g~ 371 (529)
T TIGR02857 347 PGERVALVGPSGAGKSTLLNLLLGF 371 (529)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4457999999999999999999864
No 479
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=95.10 E-value=0.019 Score=48.89 Aligned_cols=24 Identities=29% Similarity=0.386 Sum_probs=21.1
Q ss_pred eEEEEeccCCCchhHHHHHHHHhh
Q 009306 212 YKLGIWGIGGIGKTTIAGAIFNKI 235 (538)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~~ 235 (538)
+-|.|+|.||.|||||+.+++...
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~ 31 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEKT 31 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHHh
Confidence 348999999999999999999754
No 480
>PRK14530 adenylate kinase; Provisional
Probab=95.10 E-value=0.019 Score=53.74 Aligned_cols=23 Identities=22% Similarity=0.397 Sum_probs=21.1
Q ss_pred EEEEeccCCCchhHHHHHHHHhh
Q 009306 213 KLGIWGIGGIGKTTIAGAIFNKI 235 (538)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~~ 235 (538)
.|+|.|++|+||||+|+.++..+
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998876
No 481
>PRK13948 shikimate kinase; Provisional
Probab=95.09 E-value=0.022 Score=51.56 Aligned_cols=28 Identities=21% Similarity=0.233 Sum_probs=24.1
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhhcc
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKISR 237 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 237 (538)
..+.|.++|+.|+||||+++.++..+..
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg~ 36 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALML 36 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 4567999999999999999999988643
No 482
>PLN02674 adenylate kinase
Probab=95.09 E-value=0.21 Score=47.33 Aligned_cols=24 Identities=29% Similarity=0.275 Sum_probs=21.1
Q ss_pred eEEEEeccCCCchhHHHHHHHHhh
Q 009306 212 YKLGIWGIGGIGKTTIAGAIFNKI 235 (538)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~~ 235 (538)
..+.|.|++|+||||+|+.++.++
T Consensus 32 ~~i~l~G~PGsGKgT~a~~La~~~ 55 (244)
T PLN02674 32 KRLILIGPPGSGKGTQSPIIKDEY 55 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHc
Confidence 458899999999999999888765
No 483
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=95.08 E-value=0.02 Score=52.52 Aligned_cols=25 Identities=40% Similarity=0.402 Sum_probs=22.5
Q ss_pred ceEEEEeccCCCchhHHHHHHHHhh
Q 009306 211 VYKLGIWGIGGIGKTTIAGAIFNKI 235 (538)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (538)
..++.|.|++|+||||+|+.++.++
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4579999999999999999999874
No 484
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=95.07 E-value=0.032 Score=54.42 Aligned_cols=56 Identities=23% Similarity=0.291 Sum_probs=42.8
Q ss_pred CCCCCceeccchhHH---HHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhcccee
Q 009306 185 SENEDLVGVRLPMKE---IESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFS 240 (538)
Q Consensus 185 ~~~~~~vGR~~~l~~---l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~ 240 (538)
...+.|||.....+. +.++...+.-..+.|.|.|++|.|||+||..+++.+...-+
T Consensus 36 ~~~dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvP 94 (450)
T COG1224 36 FIGDGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIARELGEDVP 94 (450)
T ss_pred EcCCcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHhCCCCC
Confidence 345789998765543 34566655556778999999999999999999999876544
No 485
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=95.06 E-value=0.16 Score=50.08 Aligned_cols=25 Identities=28% Similarity=0.311 Sum_probs=22.0
Q ss_pred CceEEEEeccCCCchhHHHHHHHHh
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNK 234 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~ 234 (538)
...+++|.|+.|.|||||.+.++..
T Consensus 27 ~Gei~~l~G~NGaGKTTLl~~l~Gl 51 (301)
T TIGR03522 27 KGRIVGFLGPNGAGKSTTMKIITGY 51 (301)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCC
Confidence 4557999999999999999999864
No 486
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=95.06 E-value=0.075 Score=52.68 Aligned_cols=88 Identities=17% Similarity=0.183 Sum_probs=50.5
Q ss_pred ceEEEEeccCCCchhHHHHHHHHhhccce--eeEEEEeehhhhhhc-CChHHHHHHHHHHHhcCCCCCCchhhcHHHHHH
Q 009306 211 VYKLGIWGIGGIGKTTIAGAIFNKISRHF--SGSYFARNVREAEET-CRLGDLRQQLLSTLLNDGNVKNFLNTDLNFQSR 287 (538)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f--~~~~~~~~~~~~~~~-~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~ 287 (538)
...+.|+|..|+||||++++++..+.... ...+-+.+..+.... .... ++. . ...-.....++.
T Consensus 148 ~~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El~~~~~~~v--------~~~--~---~~~~~~~~ll~~ 214 (319)
T PRK13894 148 HRNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEIQCAAENYV--------QYH--T---SIDVNMTALLKT 214 (319)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCccccCCCCEE--------EEe--c---CCCCCHHHHHHH
Confidence 34589999999999999999997642211 222222221111000 0000 000 0 001124456677
Q ss_pred HhcCCCeEEEEecCCChHHHHHHh
Q 009306 288 RLTRKKVLIVFDDVDHPRQIKILV 311 (538)
Q Consensus 288 ~l~~k~~LlVlDdv~~~~~~~~l~ 311 (538)
.|+..|=.||+.++.+.+.+..+.
T Consensus 215 aLR~~PD~IivGEiR~~Ea~~~l~ 238 (319)
T PRK13894 215 TLRMRPDRILVGEVRGPEALDLLM 238 (319)
T ss_pred HhcCCCCEEEEeccCCHHHHHHHH
Confidence 788889999999998887666543
No 487
>PRK13946 shikimate kinase; Provisional
Probab=95.06 E-value=0.019 Score=52.21 Aligned_cols=26 Identities=19% Similarity=0.330 Sum_probs=23.0
Q ss_pred ceEEEEeccCCCchhHHHHHHHHhhc
Q 009306 211 VYKLGIWGIGGIGKTTIAGAIFNKIS 236 (538)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (538)
.+.|.++|++|+||||+++.++.++.
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg 35 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLG 35 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 34699999999999999999998873
No 488
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=95.03 E-value=0.017 Score=52.33 Aligned_cols=24 Identities=29% Similarity=0.463 Sum_probs=21.5
Q ss_pred eEEEEeccCCCchhHHHHHHHHhh
Q 009306 212 YKLGIWGIGGIGKTTIAGAIFNKI 235 (538)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~~ 235 (538)
++++|+|++|+|||||++.++...
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 468999999999999999999854
No 489
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=95.03 E-value=0.23 Score=52.28 Aligned_cols=49 Identities=24% Similarity=0.283 Sum_probs=36.7
Q ss_pred CCceeccchhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhc
Q 009306 188 EDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKIS 236 (538)
Q Consensus 188 ~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (538)
..++|....+.++...+..-......+.|.|.+|.||+++|+.+.....
T Consensus 134 ~~lig~s~~~~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~ih~~~~ 182 (463)
T TIGR01818 134 AELIGEAPAMQEVFRAIGRLSRSDITVLINGESGTGKELVARALHRHSP 182 (463)
T ss_pred cceeecCHHHHHHHHHHHHHhCcCCeEEEECCCCCCHHHHHHHHHHhCC
Confidence 4588888888777776654333344588999999999999998887543
No 490
>PRK00300 gmk guanylate kinase; Provisional
Probab=95.01 E-value=0.02 Score=53.08 Aligned_cols=27 Identities=22% Similarity=0.336 Sum_probs=23.3
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhhc
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKIS 236 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (538)
...+++|+|++|+|||||++.++....
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 345799999999999999999998653
No 491
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=95.01 E-value=0.027 Score=52.98 Aligned_cols=36 Identities=31% Similarity=0.285 Sum_probs=24.1
Q ss_pred hhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhh
Q 009306 196 PMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKI 235 (538)
Q Consensus 196 ~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (538)
+.+.+...+.. ..+..|+|++|.|||+++..+...+
T Consensus 6 Q~~Ai~~~~~~----~~~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 6 QREAIQSALSS----NGITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp HHHHHHHHCTS----SE-EEEE-STTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC----CCCEEEECCCCCChHHHHHHHHHHh
Confidence 44455555542 2268999999999998888777766
No 492
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=95.01 E-value=0.031 Score=59.02 Aligned_cols=49 Identities=16% Similarity=0.114 Sum_probs=37.2
Q ss_pred HHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhccc-eeeEEEEe
Q 009306 198 KEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRH-FSGSYFAR 246 (538)
Q Consensus 198 ~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~ 246 (538)
..|.++|..+-...+++.|.|++|+|||+||.+++.+-..+ -+.++|+.
T Consensus 8 ~gLD~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs 57 (484)
T TIGR02655 8 EGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVT 57 (484)
T ss_pred hhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 34556666666678899999999999999999998764333 45667766
No 493
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=95.00 E-value=0.025 Score=51.43 Aligned_cols=30 Identities=23% Similarity=0.426 Sum_probs=24.9
Q ss_pred ceEEEEeccCCCchhHHHHHHHHhhcccee
Q 009306 211 VYKLGIWGIGGIGKTTIAGAIFNKISRHFS 240 (538)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~ 240 (538)
.+++.|+|++|+||+||+..+.......|.
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~~~~~~ 31 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEIPDAFE 31 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcCCcceE
Confidence 357999999999999999999987654443
No 494
>PRK14737 gmk guanylate kinase; Provisional
Probab=94.98 E-value=0.022 Score=51.82 Aligned_cols=26 Identities=27% Similarity=0.287 Sum_probs=23.0
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhh
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKI 235 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (538)
..+++.|+|++|+|||||++.+..+.
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 45689999999999999999998764
No 495
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.98 E-value=0.08 Score=49.61 Aligned_cols=93 Identities=13% Similarity=0.059 Sum_probs=61.0
Q ss_pred CceEEEEeccCCCchh-HHHHHHHHhhccceeeEEEEeehhhhhhcCChHHHHHHHHHHHhcCCCCCCchhhcHHHHHHH
Q 009306 210 NVYKLGIWGIGGIGKT-TIAGAIFNKISRHFSGSYFARNVREAEETCRLGDLRQQLLSTLLNDGNVKNFLNTDLNFQSRR 288 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKT-tLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~~ 288 (538)
...++.|+|..|+||| |+|..+-++.+..+...+-+.+.- ++..+--..+........+.+.....+++.
T Consensus 126 kRGLviiVGaTGSGKSTtmAaMi~yRN~~s~gHIiTIEDPI---------Efih~h~~CIvTQREvGvDTesw~~AlkNt 196 (375)
T COG5008 126 KRGLVIIVGATGSGKSTTMAAMIGYRNKNSTGHIITIEDPI---------EFIHKHKRCIVTQREVGVDTESWEVALKNT 196 (375)
T ss_pred cCceEEEECCCCCCchhhHHHHhcccccCCCCceEEecChH---------HHHhcccceeEEeeeeccchHHHHHHHHHH
Confidence 3457899999999998 566666677777777666655322 221111112222223334555666778888
Q ss_pred hcCCCeEEEEecCCChHHHHHHh
Q 009306 289 LTRKKVLIVFDDVDHPRQIKILV 311 (538)
Q Consensus 289 l~~k~~LlVlDdv~~~~~~~~l~ 311 (538)
++..|-+|++-+|.+.+..+.-.
T Consensus 197 lRQapDvI~IGEvRsretMeyAi 219 (375)
T COG5008 197 LRQAPDVILIGEVRSRETMEYAI 219 (375)
T ss_pred HhcCCCeEEEeecccHhHHHHHH
Confidence 99999999999998887766554
No 496
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=94.97 E-value=0.026 Score=50.56 Aligned_cols=36 Identities=17% Similarity=0.365 Sum_probs=31.4
Q ss_pred ceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEe
Q 009306 211 VYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFAR 246 (538)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 246 (538)
...|.|-|++|+|||+|..+.+..++++|...+--.
T Consensus 13 ~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~ 48 (202)
T COG0378 13 MLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITG 48 (202)
T ss_pred eEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEec
Confidence 467999999999999999999999999888666554
No 497
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=94.97 E-value=0.024 Score=46.11 Aligned_cols=22 Identities=36% Similarity=0.374 Sum_probs=19.9
Q ss_pred ceEEEEeccCCCchhHHHHHHH
Q 009306 211 VYKLGIWGIGGIGKTTIAGAIF 232 (538)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~ 232 (538)
...++|.|++|+|||||++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 4679999999999999999876
No 498
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=94.97 E-value=0.11 Score=56.48 Aligned_cols=26 Identities=23% Similarity=0.226 Sum_probs=22.0
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhh
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKI 235 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (538)
....++|+|+.|.|||||++.+...+
T Consensus 357 ~G~~v~IvG~sGsGKSTLl~lL~gl~ 382 (571)
T TIGR02203 357 PGETVALVGRSGSGKSTLVNLIPRFY 382 (571)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 34569999999999999999987643
No 499
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=94.96 E-value=0.16 Score=48.68 Aligned_cols=171 Identities=13% Similarity=0.208 Sum_probs=81.4
Q ss_pred EEEEeccCCCchhHHHHHHHHh-hccce-eeEEEEeehhhhhhcCChHHHHHHHHHHHhcC-------------------
Q 009306 213 KLGIWGIGGIGKTTIAGAIFNK-ISRHF-SGSYFARNVREAEETCRLGDLRQQLLSTLLND------------------- 271 (538)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~-~~~~f-~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~------------------- 271 (538)
+..|+|+.|+|||+|.+.+..- +-+-- +.++|+.--.+.-........-.++...--..
T Consensus 89 I~~VYGPTG~GKSqLlRNLis~~lI~P~PETVfFItP~~~mIpp~E~~aW~~Ql~EgNY~~~~~gTi~P~t~t~~P~Fv~ 168 (369)
T PF02456_consen 89 IGVVYGPTGSGKSQLLRNLISCQLIQPPPETVFFITPQKDMIPPQEITAWETQLCEGNYDCGPDGTIVPQTGTFRPKFVE 168 (369)
T ss_pred EEEEECCCCCCHHHHHHHhhhcCcccCCCCceEEECCCCCCCCHHHHHHHHHHHHhcCCCCCCCCeecccccccccccee
Confidence 4557899999999999988763 22333 34555541111111111122222222210000
Q ss_pred -------CCCCCchhhcHHHHHHHhcCCCeEEEEecCC----ChHHHHHHhcCcC-----CCC--CCCEEEEeccchhhh
Q 009306 272 -------GNVKNFLNTDLNFQSRRLTRKKVLIVFDDVD----HPRQIKILVGRLD-----LFA--SGSRIIITTRDRQVL 333 (538)
Q Consensus 272 -------~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~----~~~~~~~l~~~l~-----~~~--~~~~iiiTtR~~~~~ 333 (538)
.+.+-++....+...+..+..++-||+|+.- .-..+..|..+++ ++. .|.-|+|.-.+-.-.
T Consensus 169 msy~e~t~~~NldI~~p~NiF~~Aa~~GPiaIImDECMe~Lg~~~~is~fFHAlPSKL~~rfp~CTgy~VfVVLHNmnPR 248 (369)
T PF02456_consen 169 MSYDEATSPENLDITNPNNIFAQAAKKGPIAIIMDECMEKLGSHKSISKFFHALPSKLHDRFPKCTGYYVFVVLHNMNPR 248 (369)
T ss_pred ecHhhhCCccccCCCCchHHHHHHHhcCCEEEEhHHHHHHhcCCCChhHHHhcCcHHHhhhccCCceeEEEEEeccCCcc
Confidence 0011223333455566677899999999862 1223444443332 122 244455543322111
Q ss_pred hhcCCCeeEEcCCCCHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhcCCcHHHHHHHHHh
Q 009306 334 ANCGVDEVYQMEELVHDDALRLFSRHAFGGDHPHESHTELACKTIKYARGVPLALEVLGRYL 395 (538)
Q Consensus 334 ~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~L 395 (538)
...+. .+..|....-.-++ .+.-..-.+.+-|..++.|+|.+|.++-..+
T Consensus 249 ~d~gG----NI~~LKiqAK~HIi--------Sp~~~p~QlsRFin~yt~glp~~i~~LLKdi 298 (369)
T PF02456_consen 249 RDIGG----NIANLKIQAKCHII--------SPKMHPSQLSRFINNYTKGLPTAISLLLKDI 298 (369)
T ss_pred cccCC----Cccchhhhceeeee--------cCCCCHHHHHHHHHHhccCCChhHHHHHHHH
Confidence 11100 11112111111111 1222335678888999999999997776544
No 500
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=94.93 E-value=0.12 Score=57.41 Aligned_cols=27 Identities=22% Similarity=0.147 Sum_probs=23.1
Q ss_pred eEEEEeccCCCchhHHHHHHHHhhccc
Q 009306 212 YKLGIWGIGGIGKTTIAGAIFNKISRH 238 (538)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~~~~~ 238 (538)
+++.|+|.+|.||||+++.+...+...
T Consensus 369 ~~~il~G~aGTGKTtll~~i~~~~~~~ 395 (744)
T TIGR02768 369 DIAVVVGRAGTGKSTMLKAAREAWEAA 395 (744)
T ss_pred CEEEEEecCCCCHHHHHHHHHHHHHhC
Confidence 578999999999999999998766554
Done!