Query 009306
Match_columns 538
No_of_seqs 328 out of 2965
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 23:31:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009306.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009306hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ozi_A L6TR; plant TIR domain, 100.0 5.5E-47 1.9E-51 338.3 11.7 181 1-181 19-202 (204)
2 3jrn_A AT1G72930 protein; TIR 100.0 3.2E-45 1.1E-49 322.3 11.1 169 14-184 5-175 (176)
3 2a5y_B CED-4; apoptosis; HET: 100.0 3.9E-40 1.3E-44 351.5 21.1 300 191-502 131-472 (549)
4 3sfz_A APAF-1, apoptotic pepti 100.0 1.2E-36 4.2E-41 356.2 24.2 307 182-501 118-452 (1249)
5 1z6t_A APAF-1, apoptotic prote 100.0 6.3E-36 2.1E-40 323.2 21.9 333 182-528 118-498 (591)
6 1vt4_I APAF-1 related killer D 100.0 1.2E-35 4E-40 322.2 16.3 306 188-526 128-463 (1221)
7 3h16_A TIR protein; bacteria T 100.0 8E-31 2.7E-35 230.5 3.5 120 12-132 15-135 (154)
8 3ub2_A TOLL/interleukin-1 rece 99.9 4E-26 1.4E-30 197.3 0.1 107 10-118 3-112 (146)
9 2js7_A Myeloid differentiation 99.9 6.2E-23 2.1E-27 180.3 4.8 101 12-114 11-116 (160)
10 1fyx_A TOLL-like receptor 2; b 99.9 2.7E-23 9.4E-28 180.8 2.4 97 14-112 2-103 (149)
11 2j67_A TOLL like receptor 10; 99.9 1.2E-22 4E-27 181.3 3.7 99 12-112 30-133 (178)
12 1t3g_A X-linked interleukin-1 99.8 5.7E-22 2E-26 174.0 6.7 97 16-112 1-111 (159)
13 2qen_A Walker-type ATPase; unk 99.8 9.6E-20 3.3E-24 183.1 20.9 294 179-495 3-349 (350)
14 2fna_A Conserved hypothetical 99.8 1.2E-18 4.2E-23 175.4 19.5 288 180-494 5-356 (357)
15 1w5s_A Origin recognition comp 99.8 3.4E-17 1.2E-21 168.3 20.7 285 185-479 19-371 (412)
16 2qby_A CDC6 homolog 1, cell di 99.7 6.6E-16 2.3E-20 157.0 21.7 321 185-533 17-386 (386)
17 2qby_B CDC6 homolog 3, cell di 99.7 9.2E-15 3.2E-19 148.7 25.2 278 187-479 19-339 (384)
18 1fnn_A CDC6P, cell division co 99.7 6.8E-15 2.3E-19 149.9 22.6 305 186-501 15-387 (389)
19 2v1u_A Cell division control p 99.6 1.9E-14 6.4E-19 146.4 23.8 314 186-530 17-385 (387)
20 3j0a_A TOLL-like receptor 5; m 99.6 1.2E-15 4.3E-20 171.0 7.0 101 13-115 666-774 (844)
21 1njg_A DNA polymerase III subu 99.4 4.4E-12 1.5E-16 119.7 16.3 199 185-395 20-231 (250)
22 2chg_A Replication factor C sm 99.4 3.2E-12 1.1E-16 119.0 11.7 187 184-393 13-205 (226)
23 1sxj_B Activator 1 37 kDa subu 99.2 4.8E-11 1.6E-15 118.0 12.3 188 184-394 17-212 (323)
24 1iqp_A RFCS; clamp loader, ext 99.2 8E-11 2.7E-15 116.6 13.7 190 183-395 20-215 (327)
25 1hqc_A RUVB; extended AAA-ATPa 99.2 6.1E-10 2.1E-14 110.1 19.9 257 185-484 9-303 (324)
26 2chq_A Replication factor C sm 99.1 1.3E-09 4.4E-14 107.4 15.7 188 182-393 11-205 (319)
27 3pfi_A Holliday junction ATP-d 99.0 6.3E-09 2.2E-13 103.5 17.2 262 185-490 26-324 (338)
28 1jr3_A DNA polymerase III subu 99.0 3E-09 1E-13 107.2 13.0 196 185-393 13-222 (373)
29 3te6_A Regulatory protein SIR3 98.9 8.8E-09 3E-13 100.3 11.6 168 188-360 20-211 (318)
30 3bos_A Putative DNA replicatio 98.9 6.1E-09 2.1E-13 98.0 9.4 176 186-394 26-219 (242)
31 1jbk_A CLPB protein; beta barr 98.9 7.3E-09 2.5E-13 93.5 9.5 49 186-236 20-68 (195)
32 3d8b_A Fidgetin-like protein 1 98.8 8.3E-08 2.9E-12 96.0 17.7 203 164-394 63-297 (357)
33 1sxj_A Activator 1 95 kDa subu 98.8 3.5E-08 1.2E-12 103.8 15.4 195 183-391 34-252 (516)
34 3h4m_A Proteasome-activating n 98.8 2.4E-08 8.4E-13 96.6 12.6 183 185-392 14-231 (285)
35 1sxj_D Activator 1 41 kDa subu 98.8 3.4E-08 1.2E-12 98.7 12.5 196 184-392 33-235 (353)
36 3uk6_A RUVB-like 2; hexameric 98.8 1.4E-07 4.6E-12 94.9 16.5 203 187-393 43-304 (368)
37 1sxj_E Activator 1 40 kDa subu 98.8 4.2E-08 1.5E-12 98.1 12.4 201 182-392 8-237 (354)
38 3eie_A Vacuolar protein sortin 98.8 1.3E-07 4.5E-12 93.2 15.6 185 185-394 15-230 (322)
39 2z4s_A Chromosomal replication 98.7 5.6E-08 1.9E-12 99.9 12.5 185 187-393 104-307 (440)
40 1d2n_A N-ethylmaleimide-sensit 98.7 3.8E-07 1.3E-11 87.6 17.0 169 188-384 33-229 (272)
41 1l8q_A Chromosomal replication 98.7 2.2E-07 7.7E-12 91.6 14.8 180 187-390 10-206 (324)
42 1xwi_A SKD1 protein; VPS4B, AA 98.7 9.3E-07 3.2E-11 87.0 18.4 181 187-394 11-225 (322)
43 3b9p_A CG5977-PA, isoform A; A 98.7 2.8E-07 9.5E-12 89.7 14.5 183 184-393 17-234 (297)
44 2qp9_X Vacuolar protein sortin 98.7 1E-06 3.5E-11 87.9 18.6 181 186-393 49-262 (355)
45 3pvs_A Replication-associated 98.6 1.9E-07 6.6E-12 95.9 13.5 180 185-393 23-216 (447)
46 3vfd_A Spastin; ATPase, microt 98.6 5.3E-07 1.8E-11 91.3 16.5 187 184-394 111-328 (389)
47 2qz4_A Paraplegin; AAA+, SPG7, 98.6 5.6E-07 1.9E-11 85.7 15.7 184 187-393 5-223 (262)
48 1in4_A RUVB, holliday junction 98.6 2.9E-06 9.8E-11 83.9 20.3 259 186-488 23-319 (334)
49 3u61_B DNA polymerase accessor 98.6 1.5E-07 5.2E-12 92.9 10.6 175 184-388 22-212 (324)
50 3syl_A Protein CBBX; photosynt 98.6 3.3E-07 1.1E-11 89.7 12.9 167 189-381 32-236 (309)
51 2zan_A Vacuolar protein sortin 98.6 1.3E-06 4.4E-11 89.9 17.8 186 185-393 131-346 (444)
52 3cf0_A Transitional endoplasmi 98.5 5.9E-06 2E-10 80.4 18.4 176 187-387 14-223 (301)
53 2p65_A Hypothetical protein PF 98.5 6.5E-07 2.2E-11 80.1 10.7 50 186-237 20-69 (187)
54 1a5t_A Delta prime, HOLB; zinc 98.5 3.7E-06 1.3E-10 83.2 16.6 178 195-390 9-203 (334)
55 1sxj_C Activator 1 40 kDa subu 98.4 1.3E-06 4.3E-11 86.8 11.8 183 184-388 21-208 (340)
56 3hu3_A Transitional endoplasmi 98.4 3.1E-06 1.1E-10 87.8 13.4 180 188-392 204-415 (489)
57 3pxg_A Negative regulator of g 98.3 5.6E-06 1.9E-10 85.7 15.1 149 185-360 177-338 (468)
58 4b4t_J 26S protease regulatory 98.3 9.8E-06 3.3E-10 80.9 16.0 171 188-385 148-354 (405)
59 1qvr_A CLPB protein; coiled co 98.3 1.8E-06 6.3E-11 96.3 11.8 177 185-382 167-369 (854)
60 3n70_A Transport activator; si 98.3 6.1E-07 2.1E-11 77.2 5.7 47 189-235 2-48 (145)
61 1lv7_A FTSH; alpha/beta domain 98.3 9.8E-06 3.4E-10 76.9 13.9 181 186-391 10-224 (257)
62 4b4t_H 26S protease regulatory 98.3 2.6E-05 9E-10 78.9 17.1 171 188-385 209-415 (467)
63 1ofh_A ATP-dependent HSL prote 98.2 3.4E-06 1.2E-10 82.3 10.4 50 188-237 15-76 (310)
64 4b4t_L 26S protease subunit RP 98.2 1.8E-05 6E-10 80.3 14.9 172 187-385 180-387 (437)
65 4b4t_M 26S protease regulatory 98.2 5.9E-06 2E-10 83.7 11.4 172 187-385 180-387 (434)
66 3ec2_A DNA replication protein 98.2 7.2E-06 2.5E-10 73.2 9.5 49 188-236 10-63 (180)
67 4b4t_I 26S protease regulatory 98.1 2.6E-05 8.8E-10 78.1 14.1 172 187-385 181-388 (437)
68 2gno_A DNA polymerase III, gam 98.1 1.1E-05 3.7E-10 78.4 11.0 146 192-360 1-152 (305)
69 2r62_A Cell division protease 98.1 2.3E-06 7.9E-11 81.8 5.6 153 186-360 9-196 (268)
70 4b4t_K 26S protease regulatory 98.1 1.8E-05 6E-10 80.1 12.0 171 188-385 172-379 (428)
71 3pxi_A Negative regulator of g 98.1 3.1E-05 1.1E-09 85.3 15.1 149 185-360 177-338 (758)
72 2ce7_A Cell division protein F 98.1 6.4E-05 2.2E-09 77.3 16.4 174 187-385 15-221 (476)
73 4fcw_A Chaperone protein CLPB; 98.1 2.3E-05 8E-10 76.4 12.6 50 188-237 17-73 (311)
74 1r6b_X CLPA protein; AAA+, N-t 98.1 3.2E-05 1.1E-09 85.3 14.8 155 185-360 183-362 (758)
75 2bjv_A PSP operon transcriptio 98.0 2.3E-05 8E-10 74.6 11.3 49 188-236 6-54 (265)
76 2c9o_A RUVB-like 1; hexameric 98.0 0.00018 6E-09 74.2 17.8 95 294-391 297-409 (456)
77 1ojl_A Transcriptional regulat 98.0 1.4E-05 4.7E-10 77.8 8.9 48 188-235 2-49 (304)
78 3co5_A Putative two-component 98.0 2.9E-06 9.8E-11 72.8 3.2 49 188-236 4-52 (143)
79 3cf2_A TER ATPase, transitiona 97.9 5.2E-05 1.8E-09 82.6 12.4 173 188-385 204-407 (806)
80 1ixz_A ATP-dependent metallopr 97.8 0.00043 1.5E-08 65.2 15.7 174 186-385 14-221 (254)
81 3pxi_A Negative regulator of g 97.8 3.8E-05 1.3E-09 84.6 8.9 148 188-360 491-675 (758)
82 2w58_A DNAI, primosome compone 97.8 5.9E-05 2E-09 68.5 8.1 60 187-246 24-89 (202)
83 1eiw_A Hypothetical protein MT 97.7 3.2E-05 1.1E-09 62.2 5.2 72 15-109 2-73 (111)
84 1iy2_A ATP-dependent metallopr 97.7 0.00096 3.3E-08 63.8 16.7 175 185-385 37-245 (278)
85 3t15_A Ribulose bisphosphate c 97.7 0.00021 7.1E-09 69.0 11.8 29 210-238 35-63 (293)
86 1um8_A ATP-dependent CLP prote 97.7 0.00023 7.9E-09 71.4 12.5 26 212-237 73-98 (376)
87 2kjq_A DNAA-related protein; s 97.7 3.1E-05 1.1E-09 66.7 5.1 37 210-246 35-71 (149)
88 1ypw_A Transitional endoplasmi 97.7 0.00029 9.9E-09 77.7 13.6 152 187-360 203-385 (806)
89 2dhr_A FTSH; AAA+ protein, hex 97.7 0.0014 4.9E-08 67.7 17.6 172 185-385 28-236 (499)
90 2x8a_A Nuclear valosin-contain 97.6 0.0019 6.4E-08 61.6 16.0 124 214-360 47-191 (274)
91 1r6b_X CLPA protein; AAA+, N-t 97.4 0.00035 1.2E-08 76.9 9.0 49 188-236 458-513 (758)
92 3m6a_A ATP-dependent protease 97.4 0.00073 2.5E-08 71.1 10.9 51 189-239 82-136 (543)
93 2cvh_A DNA repair and recombin 97.3 0.0007 2.4E-08 62.0 8.9 45 199-246 8-52 (220)
94 2w0m_A SSO2452; RECA, SSPF, un 97.2 0.00047 1.6E-08 63.7 7.1 49 198-246 10-58 (235)
95 1qvr_A CLPB protein; coiled co 97.2 0.0018 6E-08 72.2 12.6 50 188-237 558-614 (854)
96 3hr8_A Protein RECA; alpha and 97.2 0.0011 3.6E-08 65.5 9.3 99 195-302 44-149 (356)
97 3nbx_X ATPase RAVA; AAA+ ATPas 97.2 0.0017 5.8E-08 67.2 11.1 46 188-237 22-67 (500)
98 1jr3_D DNA polymerase III, del 97.1 0.0072 2.5E-07 59.5 14.0 165 199-391 8-184 (343)
99 3bh0_A DNAB-like replicative h 97.0 0.0048 1.6E-07 60.0 12.1 54 192-246 50-103 (315)
100 1g5t_A COB(I)alamin adenosyltr 97.0 0.0012 4.3E-08 58.8 6.9 117 213-330 30-163 (196)
101 2qgz_A Helicase loader, putati 97.0 0.002 6.9E-08 62.5 9.0 51 196-246 136-188 (308)
102 3io5_A Recombination and repai 96.9 0.0026 8.9E-08 61.0 8.9 49 197-246 11-65 (333)
103 2vhj_A Ntpase P4, P4; non- hyd 96.9 0.0007 2.4E-08 65.2 4.8 25 210-234 122-146 (331)
104 3cf2_A TER ATPase, transitiona 96.9 0.0011 3.6E-08 72.4 6.7 171 188-384 477-682 (806)
105 2b8t_A Thymidine kinase; deoxy 96.9 0.0011 3.6E-08 60.9 5.7 110 210-329 11-125 (223)
106 1ye8_A Protein THEP1, hypothet 96.9 0.022 7.6E-07 50.2 14.1 24 213-236 2-25 (178)
107 2ehv_A Hypothetical protein PH 96.8 0.0016 5.4E-08 60.9 6.7 37 210-246 29-66 (251)
108 3jvv_A Twitching mobility prot 96.8 0.0017 5.9E-08 64.2 6.5 111 211-333 123-234 (356)
109 4a1f_A DNAB helicase, replicat 96.7 0.003 1E-07 61.8 7.9 55 191-246 27-81 (338)
110 2r44_A Uncharacterized protein 96.7 0.0007 2.4E-08 66.5 3.4 48 188-239 27-74 (331)
111 1xp8_A RECA protein, recombina 96.7 0.0037 1.3E-07 61.9 8.5 55 192-246 54-109 (366)
112 1v5w_A DMC1, meiotic recombina 96.7 0.0051 1.7E-07 60.6 9.3 50 197-246 108-163 (343)
113 2zr9_A Protein RECA, recombina 96.7 0.0036 1.2E-07 61.7 8.0 53 194-246 43-96 (349)
114 1n0w_A DNA repair protein RAD5 96.6 0.0032 1.1E-07 58.5 7.1 49 198-246 11-65 (243)
115 1vma_A Cell division protein F 96.6 0.0059 2E-07 58.9 9.0 36 210-245 103-138 (306)
116 2z43_A DNA repair and recombin 96.6 0.0035 1.2E-07 61.3 7.2 50 197-246 93-148 (324)
117 1u94_A RECA protein, recombina 96.6 0.0053 1.8E-07 60.7 8.4 55 192-246 43-98 (356)
118 2eyu_A Twitching motility prot 96.5 0.0027 9.2E-08 60.0 5.9 111 210-331 24-134 (261)
119 1rz3_A Hypothetical protein rb 96.5 0.0031 1.1E-07 57.0 5.6 44 193-236 3-47 (201)
120 2q6t_A DNAB replication FORK h 96.4 0.024 8.3E-07 57.9 12.8 72 191-269 181-253 (444)
121 3sr0_A Adenylate kinase; phosp 96.4 0.0096 3.3E-07 53.9 8.6 88 213-311 2-94 (206)
122 1qhx_A CPT, protein (chloramph 96.4 0.0017 5.7E-08 57.3 3.5 26 212-237 4-29 (178)
123 1ypw_A Transitional endoplasmi 96.4 0.0012 4.1E-08 72.8 2.7 152 187-360 476-661 (806)
124 3hws_A ATP-dependent CLP prote 96.3 0.0025 8.6E-08 63.4 4.5 47 190-236 17-76 (363)
125 3bgw_A DNAB-like replicative h 96.3 0.049 1.7E-06 55.5 14.1 54 192-246 179-232 (444)
126 3umf_A Adenylate kinase; rossm 96.3 0.017 5.8E-07 52.7 9.4 27 209-235 27-53 (217)
127 3c8u_A Fructokinase; YP_612366 96.3 0.0031 1.1E-07 57.3 4.5 28 209-236 20-47 (208)
128 2i1q_A DNA repair and recombin 96.2 0.0076 2.6E-07 58.8 7.4 38 197-234 84-121 (322)
129 2cbz_A Multidrug resistance-as 96.2 0.022 7.5E-07 52.8 10.2 27 210-236 30-56 (237)
130 1ex7_A Guanylate kinase; subst 96.2 0.0019 6.6E-08 57.4 2.7 29 212-240 2-30 (186)
131 3kb2_A SPBC2 prophage-derived 96.2 0.0027 9.3E-08 55.5 3.6 24 213-236 3-26 (173)
132 4eun_A Thermoresistant glucoki 96.2 0.014 4.7E-07 52.6 8.4 26 210-235 28-53 (200)
133 3hyn_A Putative signal transdu 96.2 0.025 8.6E-07 48.8 9.2 106 16-126 4-133 (189)
134 2pze_A Cystic fibrosis transme 96.1 0.041 1.4E-06 50.7 11.2 26 211-236 34-59 (229)
135 1q57_A DNA primase/helicase; d 96.1 0.025 8.7E-07 58.8 11.0 63 199-268 231-294 (503)
136 1j8m_F SRP54, signal recogniti 96.1 0.038 1.3E-06 53.0 11.4 36 211-246 98-133 (297)
137 2ewv_A Twitching motility prot 96.0 0.011 3.7E-07 58.9 7.3 109 210-330 135-244 (372)
138 2pjz_A Hypothetical protein ST 96.0 0.044 1.5E-06 51.6 11.2 25 211-235 30-54 (263)
139 3trf_A Shikimate kinase, SK; a 96.0 0.0037 1.3E-07 55.5 3.6 26 211-236 5-30 (185)
140 3vaa_A Shikimate kinase, SK; s 96.0 0.004 1.4E-07 56.1 3.7 26 211-236 25-50 (199)
141 3uie_A Adenylyl-sulfate kinase 96.0 0.0054 1.8E-07 55.3 4.5 27 210-236 24-50 (200)
142 2r6a_A DNAB helicase, replicat 95.9 0.03 1E-06 57.3 10.4 54 192-246 185-239 (454)
143 1kgd_A CASK, peripheral plasma 95.9 0.0042 1.4E-07 55.0 3.4 26 211-236 5-30 (180)
144 1odf_A YGR205W, hypothetical 3 95.9 0.0074 2.5E-07 57.8 5.3 30 208-237 28-57 (290)
145 2dr3_A UPF0273 protein PH0284; 95.9 0.0047 1.6E-07 57.4 3.8 48 199-246 11-58 (247)
146 1nks_A Adenylate kinase; therm 95.9 0.006 2.1E-07 54.3 4.3 26 212-237 2-27 (194)
147 3lw7_A Adenylate kinase relate 95.9 0.0046 1.6E-07 54.0 3.5 23 212-235 2-24 (179)
148 1kag_A SKI, shikimate kinase I 95.9 0.0039 1.3E-07 54.5 3.0 25 212-236 5-29 (173)
149 2nq2_C Hypothetical ABC transp 95.8 0.014 4.6E-07 54.8 6.7 25 211-235 31-55 (253)
150 1g8p_A Magnesium-chelatase 38 95.8 0.0042 1.4E-07 61.2 3.3 49 186-236 22-70 (350)
151 1zp6_A Hypothetical protein AT 95.8 0.0054 1.8E-07 54.6 3.6 25 210-234 8-32 (191)
152 1tue_A Replication protein E1; 95.8 0.0073 2.5E-07 54.1 4.3 41 196-237 44-84 (212)
153 3a00_A Guanylate kinase, GMP k 95.8 0.0052 1.8E-07 54.7 3.4 29 212-240 2-30 (186)
154 2rhm_A Putative kinase; P-loop 95.8 0.0072 2.5E-07 53.8 4.4 25 211-235 5-29 (193)
155 1ly1_A Polynucleotide kinase; 95.8 0.0053 1.8E-07 54.0 3.4 22 212-233 3-24 (181)
156 3tlx_A Adenylate kinase 2; str 95.7 0.0062 2.1E-07 56.8 3.9 26 210-235 28-53 (243)
157 4a74_A DNA repair and recombin 95.7 0.0097 3.3E-07 54.6 5.3 38 198-235 12-49 (231)
158 3iij_A Coilin-interacting nucl 95.7 0.0048 1.6E-07 54.5 3.0 26 211-236 11-36 (180)
159 1zuh_A Shikimate kinase; alpha 95.7 0.006 2E-07 53.2 3.5 26 211-236 7-32 (168)
160 2px0_A Flagellar biosynthesis 95.7 0.023 7.9E-07 54.5 7.9 37 210-246 104-141 (296)
161 3tau_A Guanylate kinase, GMP k 95.7 0.0057 1.9E-07 55.5 3.3 28 210-237 7-34 (208)
162 3kl4_A SRP54, signal recogniti 95.7 0.013 4.3E-07 59.3 6.1 36 210-245 96-131 (433)
163 3lda_A DNA repair protein RAD5 95.7 0.016 5.6E-07 58.0 6.9 39 196-234 163-201 (400)
164 1knq_A Gluconate kinase; ALFA/ 95.6 0.0084 2.9E-07 52.6 4.2 25 211-235 8-32 (175)
165 2ze6_A Isopentenyl transferase 95.6 0.0071 2.4E-07 56.8 3.8 25 212-236 2-26 (253)
166 2yvu_A Probable adenylyl-sulfa 95.6 0.0095 3.2E-07 52.9 4.5 29 210-238 12-40 (186)
167 1via_A Shikimate kinase; struc 95.6 0.0067 2.3E-07 53.3 3.4 24 213-236 6-29 (175)
168 1kht_A Adenylate kinase; phosp 95.6 0.0064 2.2E-07 54.1 3.3 26 212-237 4-29 (192)
169 1gvn_B Zeta; postsegregational 95.6 0.014 4.8E-07 55.9 5.8 27 210-236 32-58 (287)
170 3t61_A Gluconokinase; PSI-biol 95.5 0.0058 2E-07 55.1 2.9 24 212-235 19-42 (202)
171 2c95_A Adenylate kinase 1; tra 95.5 0.0083 2.8E-07 53.6 3.8 26 211-236 9-34 (196)
172 1zu4_A FTSY; GTPase, signal re 95.5 0.017 5.7E-07 56.2 6.1 36 210-245 104-139 (320)
173 2iyv_A Shikimate kinase, SK; t 95.5 0.006 2.1E-07 54.0 2.7 24 213-236 4-27 (184)
174 2bbs_A Cystic fibrosis transme 95.5 0.099 3.4E-06 49.9 11.3 26 210-235 63-88 (290)
175 2vli_A Antibiotic resistance p 95.5 0.0066 2.3E-07 53.6 2.8 26 211-236 5-30 (183)
176 3upu_A ATP-dependent DNA helic 95.4 0.03 1E-06 57.4 8.2 27 213-239 47-73 (459)
177 2jaq_A Deoxyguanosine kinase; 95.4 0.0086 2.9E-07 53.8 3.6 25 213-237 2-26 (205)
178 3cm0_A Adenylate kinase; ATP-b 95.4 0.0099 3.4E-07 52.6 4.0 25 211-235 4-28 (186)
179 1uj2_A Uridine-cytidine kinase 95.4 0.0089 3E-07 56.0 3.7 27 210-236 21-47 (252)
180 3dm5_A SRP54, signal recogniti 95.4 0.056 1.9E-06 54.6 9.7 36 210-245 99-134 (443)
181 2qor_A Guanylate kinase; phosp 95.4 0.0068 2.3E-07 54.8 2.8 26 211-236 12-37 (204)
182 1e6c_A Shikimate kinase; phosp 95.4 0.0073 2.5E-07 52.7 2.9 24 213-236 4-27 (173)
183 3cmu_A Protein RECA, recombina 95.4 0.014 4.7E-07 69.3 6.0 97 197-302 1412-1515(2050)
184 3tr0_A Guanylate kinase, GMP k 95.4 0.0085 2.9E-07 54.0 3.4 25 211-235 7-31 (205)
185 1ukz_A Uridylate kinase; trans 95.4 0.011 3.8E-07 53.2 4.2 26 210-235 14-39 (203)
186 3ney_A 55 kDa erythrocyte memb 95.4 0.0097 3.3E-07 53.3 3.7 28 210-237 18-45 (197)
187 1y63_A LMAJ004144AAA protein; 95.4 0.0094 3.2E-07 52.9 3.6 24 211-234 10-33 (184)
188 1tev_A UMP-CMP kinase; ploop, 95.4 0.01 3.5E-07 52.8 3.9 24 212-235 4-27 (196)
189 2bwj_A Adenylate kinase 5; pho 95.3 0.0094 3.2E-07 53.3 3.5 25 212-236 13-37 (199)
190 2plr_A DTMP kinase, probable t 95.3 0.015 5.2E-07 52.5 4.9 27 212-238 5-31 (213)
191 1xjc_A MOBB protein homolog; s 95.3 0.012 4.2E-07 51.2 4.0 29 210-238 3-31 (169)
192 2pt7_A CAG-ALFA; ATPase, prote 95.3 0.025 8.6E-07 55.2 6.6 104 212-330 172-275 (330)
193 2ga8_A Hypothetical 39.9 kDa p 95.3 0.012 4E-07 57.6 4.0 30 210-239 23-52 (359)
194 3asz_A Uridine kinase; cytidin 95.3 0.011 3.8E-07 53.5 3.8 27 210-236 5-31 (211)
195 2pt5_A Shikimate kinase, SK; a 95.3 0.011 3.8E-07 51.3 3.6 24 213-236 2-25 (168)
196 1qf9_A UMP/CMP kinase, protein 95.2 0.012 4E-07 52.3 3.8 26 211-236 6-31 (194)
197 2z0h_A DTMP kinase, thymidylat 95.2 0.019 6.5E-07 51.2 5.2 25 213-237 2-26 (197)
198 2cdn_A Adenylate kinase; phosp 95.2 0.014 4.6E-07 52.5 4.2 26 211-236 20-45 (201)
199 1cke_A CK, MSSA, protein (cyti 95.2 0.01 3.4E-07 54.5 3.3 24 212-235 6-29 (227)
200 2bdt_A BH3686; alpha-beta prot 95.2 0.011 3.7E-07 52.6 3.4 23 212-234 3-25 (189)
201 3gd7_A Fusion complex of cysti 95.2 0.068 2.3E-06 53.3 9.5 34 210-245 46-79 (390)
202 2j41_A Guanylate kinase; GMP, 95.2 0.011 3.7E-07 53.3 3.4 25 211-235 6-30 (207)
203 2xxa_A Signal recognition part 95.2 0.17 5.9E-06 51.1 12.6 37 210-246 99-136 (433)
204 1nn5_A Similar to deoxythymidy 95.2 0.014 4.9E-07 52.8 4.3 28 211-238 9-36 (215)
205 1aky_A Adenylate kinase; ATP:A 95.2 0.012 4.1E-07 53.8 3.7 26 211-236 4-29 (220)
206 2pez_A Bifunctional 3'-phospho 95.1 0.013 4.5E-07 51.6 3.7 27 210-236 4-30 (179)
207 1uf9_A TT1252 protein; P-loop, 95.1 0.013 4.5E-07 52.5 3.7 25 210-234 7-31 (203)
208 2qt1_A Nicotinamide riboside k 95.1 0.013 4.3E-07 53.1 3.5 26 210-235 20-45 (207)
209 2pbr_A DTMP kinase, thymidylat 95.0 0.012 4.3E-07 52.3 3.3 24 213-236 2-25 (195)
210 2wwf_A Thymidilate kinase, put 95.0 0.013 4.3E-07 53.1 3.4 27 211-237 10-36 (212)
211 3e70_C DPA, signal recognition 95.0 0.023 7.7E-07 55.4 5.3 29 210-238 128-156 (328)
212 3k1j_A LON protease, ATP-depen 95.0 0.015 5.1E-07 62.0 4.3 49 186-238 39-87 (604)
213 1gtv_A TMK, thymidylate kinase 95.0 0.013 4.5E-07 53.1 3.4 25 213-237 2-26 (214)
214 2if2_A Dephospho-COA kinase; a 95.0 0.012 4.2E-07 52.9 3.2 21 213-233 3-23 (204)
215 3a4m_A L-seryl-tRNA(SEC) kinas 95.0 0.014 4.8E-07 54.9 3.7 26 211-236 4-29 (260)
216 2zts_A Putative uncharacterize 95.0 0.011 3.6E-07 55.1 2.8 48 199-246 18-66 (251)
217 3tqc_A Pantothenate kinase; bi 95.0 0.017 5.9E-07 55.9 4.3 47 190-236 69-117 (321)
218 4gp7_A Metallophosphoesterase; 95.0 0.012 4.1E-07 51.5 2.9 23 210-232 8-30 (171)
219 3fb4_A Adenylate kinase; psych 94.9 0.014 4.7E-07 53.2 3.3 23 213-235 2-24 (216)
220 1s96_A Guanylate kinase, GMP k 94.9 0.015 5.2E-07 53.2 3.5 27 210-236 15-41 (219)
221 3llm_A ATP-dependent RNA helic 94.9 0.069 2.4E-06 49.2 8.1 22 212-233 77-98 (235)
222 4e22_A Cytidylate kinase; P-lo 94.9 0.017 5.9E-07 54.0 4.0 26 211-236 27-52 (252)
223 1zak_A Adenylate kinase; ATP:A 94.9 0.014 4.7E-07 53.5 3.2 25 212-236 6-30 (222)
224 2bbw_A Adenylate kinase 4, AK4 94.9 0.014 4.8E-07 54.4 3.3 26 211-236 27-52 (246)
225 1jjv_A Dephospho-COA kinase; P 94.9 0.014 4.7E-07 52.7 3.2 22 212-233 3-24 (206)
226 1zd8_A GTP:AMP phosphotransfer 94.9 0.015 5.2E-07 53.4 3.6 25 211-235 7-31 (227)
227 1rj9_A FTSY, signal recognitio 94.9 0.021 7.1E-07 55.0 4.6 29 210-238 101-129 (304)
228 2grj_A Dephospho-COA kinase; T 94.8 0.015 5.2E-07 51.9 3.3 26 210-235 11-36 (192)
229 1g41_A Heat shock protein HSLU 94.8 0.021 7.3E-07 57.8 4.7 51 189-239 16-78 (444)
230 3dl0_A Adenylate kinase; phosp 94.8 0.015 5.1E-07 52.9 3.3 23 213-235 2-24 (216)
231 1pzn_A RAD51, DNA repair and r 94.8 0.028 9.6E-07 55.4 5.4 38 198-235 118-155 (349)
232 1lvg_A Guanylate kinase, GMP k 94.8 0.012 4.1E-07 52.9 2.5 25 212-236 5-29 (198)
233 1sky_E F1-ATPase, F1-ATP synth 94.8 0.038 1.3E-06 56.1 6.3 27 213-239 153-179 (473)
234 2p5t_B PEZT; postsegregational 94.8 0.017 5.7E-07 54.2 3.5 27 210-236 31-57 (253)
235 3fwy_A Light-independent proto 94.7 0.022 7.7E-07 55.1 4.4 38 209-246 46-83 (314)
236 2jeo_A Uridine-cytidine kinase 94.7 0.019 6.6E-07 53.4 3.8 26 210-235 24-49 (245)
237 2v54_A DTMP kinase, thymidylat 94.7 0.017 5.6E-07 52.0 3.3 25 211-235 4-28 (204)
238 2yhs_A FTSY, cell division pro 94.7 0.036 1.2E-06 56.7 6.0 35 210-245 292-326 (503)
239 1znw_A Guanylate kinase, GMP k 94.7 0.016 5.5E-07 52.4 3.1 27 210-236 19-45 (207)
240 3be4_A Adenylate kinase; malar 94.7 0.017 5.9E-07 52.7 3.3 24 212-235 6-29 (217)
241 3ice_A Transcription terminati 94.7 0.013 4.5E-07 57.7 2.6 29 210-238 173-201 (422)
242 1u0j_A DNA replication protein 94.6 0.029 9.9E-07 52.6 4.8 38 198-235 91-128 (267)
243 3p32_A Probable GTPase RV1496/ 94.6 0.036 1.2E-06 54.8 5.8 40 199-238 67-106 (355)
244 1htw_A HI0065; nucleotide-bind 94.6 0.022 7.5E-07 49.1 3.6 27 209-235 31-57 (158)
245 1m7g_A Adenylylsulfate kinase; 94.6 0.022 7.6E-07 51.6 3.8 27 210-236 24-50 (211)
246 3r20_A Cytidylate kinase; stru 94.6 0.021 7.2E-07 52.6 3.6 26 211-236 9-34 (233)
247 3aez_A Pantothenate kinase; tr 94.6 0.02 6.8E-07 55.4 3.6 28 209-236 88-115 (312)
248 3nwj_A ATSK2; P loop, shikimat 94.5 0.017 5.8E-07 54.0 2.9 25 212-236 49-73 (250)
249 3ake_A Cytidylate kinase; CMP 94.5 0.022 7.5E-07 51.3 3.6 24 213-236 4-27 (208)
250 1z6g_A Guanylate kinase; struc 94.5 0.015 5.3E-07 53.1 2.6 25 211-235 23-47 (218)
251 1cr0_A DNA primase/helicase; R 94.5 0.031 1.1E-06 53.6 4.8 38 209-246 33-71 (296)
252 3cmu_A Protein RECA, recombina 94.5 0.096 3.3E-06 62.4 9.6 105 189-302 360-471 (2050)
253 1a7j_A Phosphoribulokinase; tr 94.4 0.016 5.6E-07 55.4 2.6 27 210-236 4-30 (290)
254 3b9q_A Chloroplast SRP recepto 94.4 0.029 9.9E-07 54.0 4.4 29 210-238 99-127 (302)
255 3cmw_A Protein RECA, recombina 94.4 0.037 1.3E-06 65.0 5.9 102 192-302 363-471 (1706)
256 3d3q_A TRNA delta(2)-isopenten 94.4 0.023 7.8E-07 55.3 3.6 25 212-236 8-32 (340)
257 3ozx_A RNAse L inhibitor; ATP 94.4 0.035 1.2E-06 58.0 5.2 25 210-234 24-48 (538)
258 3e1s_A Exodeoxyribonuclease V, 94.4 0.12 4.1E-06 54.5 9.3 33 211-243 204-236 (574)
259 3a8t_A Adenylate isopentenyltr 94.4 0.024 8.3E-07 55.0 3.6 26 211-236 40-65 (339)
260 3cmw_A Protein RECA, recombina 94.3 0.038 1.3E-06 64.8 5.9 102 192-302 712-820 (1706)
261 3crm_A TRNA delta(2)-isopenten 94.3 0.025 8.5E-07 54.7 3.7 25 212-236 6-30 (323)
262 3exa_A TRNA delta(2)-isopenten 94.3 0.027 9.1E-07 54.1 3.6 26 211-236 3-28 (322)
263 2xb4_A Adenylate kinase; ATP-b 94.3 0.024 8.3E-07 51.9 3.3 23 213-235 2-24 (223)
264 1ak2_A Adenylate kinase isoenz 94.2 0.029 9.9E-07 51.8 3.8 25 212-236 17-41 (233)
265 3hjn_A DTMP kinase, thymidylat 94.2 0.044 1.5E-06 49.1 4.9 34 213-246 2-35 (197)
266 1e4v_A Adenylate kinase; trans 94.2 0.025 8.6E-07 51.4 3.3 23 213-235 2-24 (214)
267 3lnc_A Guanylate kinase, GMP k 94.2 0.018 6.2E-07 53.0 2.3 25 211-235 27-52 (231)
268 1sq5_A Pantothenate kinase; P- 94.2 0.044 1.5E-06 53.0 5.1 27 210-236 79-105 (308)
269 4eaq_A DTMP kinase, thymidylat 94.2 0.05 1.7E-06 50.0 5.3 28 210-237 25-52 (229)
270 2f6r_A COA synthase, bifunctio 94.2 0.028 9.7E-07 53.5 3.7 24 210-233 74-97 (281)
271 2qmh_A HPR kinase/phosphorylas 94.2 0.026 8.8E-07 50.3 3.1 26 211-236 34-59 (205)
272 1vht_A Dephospho-COA kinase; s 94.2 0.03 1E-06 50.9 3.7 23 211-233 4-26 (218)
273 2j37_W Signal recognition part 94.1 0.2 7E-06 51.6 10.2 37 210-246 100-136 (504)
274 3tif_A Uncharacterized ABC tra 94.1 0.033 1.1E-06 51.5 3.9 26 210-235 30-55 (235)
275 1np6_A Molybdopterin-guanine d 94.1 0.038 1.3E-06 48.4 4.0 27 211-237 6-32 (174)
276 3foz_A TRNA delta(2)-isopenten 94.0 0.035 1.2E-06 53.1 4.0 26 210-235 9-34 (316)
277 2onk_A Molybdate/tungstate ABC 94.0 0.04 1.4E-06 51.1 4.3 24 212-235 25-48 (240)
278 4edh_A DTMP kinase, thymidylat 94.0 0.067 2.3E-06 48.5 5.7 28 211-238 6-33 (213)
279 2i3b_A HCR-ntpase, human cance 94.0 0.025 8.5E-07 50.4 2.7 24 213-236 3-26 (189)
280 2orw_A Thymidine kinase; TMTK, 93.9 0.042 1.4E-06 48.6 4.1 25 212-236 4-28 (184)
281 2og2_A Putative signal recogni 93.9 0.041 1.4E-06 54.2 4.3 29 210-238 156-184 (359)
282 1g8f_A Sulfate adenylyltransfe 93.8 0.035 1.2E-06 57.3 3.8 28 210-237 394-421 (511)
283 2ck3_D ATP synthase subunit be 93.8 0.097 3.3E-06 53.0 6.9 54 211-267 153-207 (482)
284 2f1r_A Molybdopterin-guanine d 93.8 0.02 6.9E-07 50.1 1.7 27 212-238 3-29 (171)
285 2pcj_A ABC transporter, lipopr 93.8 0.037 1.3E-06 50.7 3.6 25 211-235 30-54 (224)
286 1svm_A Large T antigen; AAA+ f 93.8 0.047 1.6E-06 54.2 4.5 29 207-235 165-193 (377)
287 3bk7_A ABC transporter ATP-bin 93.8 0.1 3.6E-06 55.2 7.4 25 211-235 382-406 (607)
288 3b85_A Phosphate starvation-in 93.8 0.03 1E-06 50.7 2.8 23 212-234 23-45 (208)
289 2r8r_A Sensor protein; KDPD, P 93.7 0.06 2.1E-06 49.0 4.7 33 213-245 8-40 (228)
290 1b0u_A Histidine permease; ABC 93.7 0.044 1.5E-06 51.6 3.9 26 210-235 31-56 (262)
291 3b5x_A Lipid A export ATP-bind 93.7 0.23 8E-06 52.5 10.0 26 210-235 368-393 (582)
292 2hf9_A Probable hydrogenase ni 93.6 0.068 2.3E-06 48.7 5.1 29 210-238 37-65 (226)
293 1ltq_A Polynucleotide kinase; 93.6 0.038 1.3E-06 53.1 3.4 23 212-234 3-25 (301)
294 2olj_A Amino acid ABC transpor 93.6 0.047 1.6E-06 51.4 3.9 26 210-235 49-74 (263)
295 4dzz_A Plasmid partitioning pr 93.6 0.11 3.9E-06 46.3 6.4 35 212-246 2-37 (206)
296 3gfo_A Cobalt import ATP-bindi 93.5 0.044 1.5E-06 51.9 3.7 25 211-235 34-58 (275)
297 1q3t_A Cytidylate kinase; nucl 93.5 0.049 1.7E-06 50.3 3.9 26 210-235 15-40 (236)
298 2qi9_C Vitamin B12 import ATP- 93.5 0.044 1.5E-06 51.1 3.5 28 211-238 26-53 (249)
299 3zvl_A Bifunctional polynucleo 93.5 0.039 1.3E-06 55.8 3.4 26 210-235 257-282 (416)
300 1fx0_B ATP synthase beta chain 93.4 0.13 4.4E-06 52.4 7.0 52 212-266 166-218 (498)
301 1ls1_A Signal recognition part 93.4 0.06 2.1E-06 51.6 4.4 36 210-245 97-132 (295)
302 2ghi_A Transport protein; mult 93.4 0.053 1.8E-06 50.9 3.9 27 210-236 45-71 (260)
303 3lv8_A DTMP kinase, thymidylat 93.3 0.077 2.6E-06 48.9 4.9 36 211-246 27-63 (236)
304 1nlf_A Regulatory protein REPA 93.3 0.058 2E-06 51.2 4.3 27 210-236 29-55 (279)
305 1yrb_A ATP(GTP)binding protein 93.3 0.076 2.6E-06 49.7 5.0 27 210-236 13-39 (262)
306 1mv5_A LMRA, multidrug resista 93.3 0.041 1.4E-06 51.1 3.1 25 210-234 27-51 (243)
307 1g6h_A High-affinity branched- 93.3 0.05 1.7E-06 51.0 3.7 26 210-235 32-57 (257)
308 3zq6_A Putative arsenical pump 93.3 0.079 2.7E-06 51.5 5.2 36 211-246 14-49 (324)
309 1sgw_A Putative ABC transporte 93.3 0.044 1.5E-06 49.8 3.1 25 211-235 35-59 (214)
310 2ixe_A Antigen peptide transpo 93.2 0.056 1.9E-06 51.1 3.9 26 210-235 44-69 (271)
311 3v9p_A DTMP kinase, thymidylat 93.2 0.073 2.5E-06 48.8 4.6 28 211-238 25-52 (227)
312 1ji0_A ABC transporter; ATP bi 93.2 0.053 1.8E-06 50.3 3.7 24 211-234 32-55 (240)
313 2v9p_A Replication protein E1; 93.2 0.066 2.3E-06 51.4 4.4 27 209-235 124-150 (305)
314 2zu0_C Probable ATP-dependent 93.2 0.047 1.6E-06 51.6 3.3 25 210-234 45-69 (267)
315 2wsm_A Hydrogenase expression/ 93.2 0.076 2.6E-06 48.2 4.7 29 210-238 29-57 (221)
316 1vpl_A ABC transporter, ATP-bi 93.2 0.058 2E-06 50.5 3.9 26 210-235 40-65 (256)
317 3end_A Light-independent proto 93.2 0.066 2.3E-06 51.6 4.4 37 210-246 40-76 (307)
318 2j9r_A Thymidine kinase; TK1, 93.2 0.18 6E-06 45.5 6.8 108 210-330 27-138 (214)
319 2d2e_A SUFC protein; ABC-ATPas 93.2 0.045 1.5E-06 51.1 3.1 24 211-234 29-52 (250)
320 2ff7_A Alpha-hemolysin translo 93.2 0.055 1.9E-06 50.4 3.7 25 211-235 35-59 (247)
321 3ld9_A DTMP kinase, thymidylat 93.2 0.082 2.8E-06 48.3 4.7 28 210-237 20-47 (223)
322 4tmk_A Protein (thymidylate ki 93.1 0.095 3.2E-06 47.5 5.1 35 212-246 4-39 (213)
323 3eph_A TRNA isopentenyltransfe 93.1 0.052 1.8E-06 54.0 3.6 25 212-236 3-27 (409)
324 4g1u_C Hemin import ATP-bindin 93.1 0.048 1.6E-06 51.4 3.2 25 210-234 36-60 (266)
325 1cp2_A CP2, nitrogenase iron p 93.1 0.075 2.6E-06 50.0 4.5 35 212-246 2-36 (269)
326 2ihy_A ABC transporter, ATP-bi 93.0 0.058 2E-06 51.2 3.7 26 210-235 46-71 (279)
327 2v3c_C SRP54, signal recogniti 93.0 0.046 1.6E-06 55.4 3.1 36 211-246 99-134 (432)
328 3cr8_A Sulfate adenylyltranfer 92.9 0.05 1.7E-06 56.9 3.2 29 210-238 368-396 (552)
329 2ocp_A DGK, deoxyguanosine kin 92.9 0.063 2.1E-06 49.7 3.6 26 211-236 2-27 (241)
330 2yz2_A Putative ABC transporte 92.9 0.068 2.3E-06 50.4 3.9 26 210-235 32-57 (266)
331 3tqf_A HPR(Ser) kinase; transf 92.9 0.067 2.3E-06 46.3 3.4 24 211-234 16-39 (181)
332 3ug7_A Arsenical pump-driving 92.8 0.13 4.5E-06 50.5 6.0 39 208-246 23-61 (349)
333 1w36_D RECD, exodeoxyribonucle 92.8 0.5 1.7E-05 50.1 10.8 26 211-236 164-189 (608)
334 2p67_A LAO/AO transport system 92.7 0.12 4.2E-06 50.6 5.6 29 209-237 54-82 (341)
335 2qm8_A GTPase/ATPase; G protei 92.7 0.13 4.3E-06 50.4 5.7 28 209-236 53-80 (337)
336 1oix_A RAS-related protein RAB 92.5 0.068 2.3E-06 47.4 3.2 25 211-235 29-53 (191)
337 1puj_A YLQF, conserved hypothe 92.5 0.77 2.7E-05 43.4 10.8 39 56-95 7-47 (282)
338 3fdi_A Uncharacterized protein 92.5 0.081 2.8E-06 47.5 3.6 25 212-236 7-31 (201)
339 3fvq_A Fe(3+) IONS import ATP- 92.4 0.067 2.3E-06 52.6 3.3 25 210-234 29-53 (359)
340 2afh_E Nitrogenase iron protei 92.4 0.094 3.2E-06 50.0 4.2 35 212-246 3-37 (289)
341 2h92_A Cytidylate kinase; ross 92.4 0.068 2.3E-06 48.5 3.1 23 213-235 5-27 (219)
342 3gmt_A Adenylate kinase; ssgci 92.3 0.071 2.4E-06 48.8 3.1 23 213-235 10-32 (230)
343 2gks_A Bifunctional SAT/APS ki 92.3 0.096 3.3E-06 54.8 4.5 27 211-237 372-398 (546)
344 3kta_A Chromosome segregation 92.3 0.071 2.4E-06 46.8 3.0 23 213-235 28-50 (182)
345 3f9v_A Minichromosome maintena 92.3 0.043 1.5E-06 58.2 1.8 49 187-235 294-351 (595)
346 1m8p_A Sulfate adenylyltransfe 92.3 0.1 3.4E-06 55.0 4.6 28 210-237 395-422 (573)
347 3nh6_A ATP-binding cassette SU 92.3 0.068 2.3E-06 51.4 3.1 25 210-234 79-103 (306)
348 2f9l_A RAB11B, member RAS onco 92.3 0.07 2.4E-06 47.6 3.0 23 212-234 6-28 (199)
349 2vp4_A Deoxynucleoside kinase; 92.2 0.059 2E-06 49.6 2.5 25 210-234 19-43 (230)
350 3vkw_A Replicase large subunit 92.2 0.71 2.4E-05 46.5 10.5 25 209-233 159-183 (446)
351 3io3_A DEHA2D07832P; chaperone 92.2 0.12 4.1E-06 50.7 4.7 38 209-246 16-55 (348)
352 2axn_A 6-phosphofructo-2-kinas 92.1 0.11 3.7E-06 54.0 4.6 29 210-238 34-62 (520)
353 3sop_A Neuronal-specific septi 92.1 0.076 2.6E-06 50.2 3.1 23 213-235 4-26 (270)
354 3iqw_A Tail-anchored protein t 92.1 0.14 4.6E-06 50.0 4.9 37 210-246 15-51 (334)
355 2dyk_A GTP-binding protein; GT 92.0 0.096 3.3E-06 44.4 3.5 23 212-234 2-24 (161)
356 2ffh_A Protein (FFH); SRP54, s 92.0 0.12 4.3E-06 51.9 4.7 36 210-245 97-132 (425)
357 3kjh_A CO dehydrogenase/acetyl 92.0 0.1 3.5E-06 48.2 3.9 33 214-246 3-35 (254)
358 3cnl_A YLQF, putative uncharac 92.0 0.15 5.1E-06 47.9 5.0 23 212-234 100-122 (262)
359 1nij_A Hypothetical protein YJ 92.0 0.083 2.8E-06 51.2 3.3 26 210-235 3-28 (318)
360 2ged_A SR-beta, signal recogni 91.9 0.12 4.2E-06 45.5 4.2 24 211-234 48-71 (193)
361 2wji_A Ferrous iron transport 91.9 0.094 3.2E-06 45.1 3.3 23 212-234 4-26 (165)
362 2zej_A Dardarin, leucine-rich 91.9 0.067 2.3E-06 47.0 2.3 20 214-233 5-24 (184)
363 2yyz_A Sugar ABC transporter, 91.8 0.12 4.3E-06 50.7 4.4 25 210-234 28-52 (359)
364 3tui_C Methionine import ATP-b 91.8 0.13 4.3E-06 50.7 4.4 25 210-234 53-77 (366)
365 2it1_A 362AA long hypothetical 91.8 0.13 4.3E-06 50.7 4.4 25 210-234 28-52 (362)
366 1z47_A CYSA, putative ABC-tran 91.8 0.12 4.1E-06 50.7 4.2 25 210-234 40-64 (355)
367 3rlf_A Maltose/maltodextrin im 91.8 0.13 4.4E-06 51.0 4.4 26 210-235 28-53 (381)
368 1p9r_A General secretion pathw 91.7 0.15 5.2E-06 51.3 4.9 85 210-307 166-251 (418)
369 1tf7_A KAIC; homohexamer, hexa 91.7 0.13 4.3E-06 53.8 4.5 48 199-246 269-316 (525)
370 3thx_A DNA mismatch repair pro 91.7 0.21 7.2E-06 55.5 6.4 23 210-232 661-683 (934)
371 4hlc_A DTMP kinase, thymidylat 91.7 0.15 5.3E-06 45.8 4.5 29 212-240 3-31 (205)
372 1tq4_A IIGP1, interferon-induc 91.6 0.073 2.5E-06 53.5 2.5 25 210-234 68-92 (413)
373 2fz4_A DNA repair protein RAD2 91.5 0.89 3E-05 41.7 9.7 40 191-235 93-132 (237)
374 1v43_A Sugar-binding transport 91.5 0.14 4.8E-06 50.6 4.4 25 210-234 36-60 (372)
375 2ce2_X GTPase HRAS; signaling 91.5 0.098 3.4E-06 44.4 2.9 22 213-234 5-26 (166)
376 3ea0_A ATPase, para family; al 91.4 0.18 6.2E-06 46.5 4.8 37 210-246 3-41 (245)
377 1p5z_B DCK, deoxycytidine kina 91.4 0.062 2.1E-06 50.5 1.6 27 210-236 23-49 (263)
378 1lw7_A Transcriptional regulat 91.3 0.11 3.7E-06 51.5 3.4 27 211-237 170-196 (365)
379 3d31_A Sulfate/molybdate ABC t 91.3 0.12 4E-06 50.7 3.6 26 210-235 25-50 (348)
380 3hdt_A Putative kinase; struct 91.3 0.14 4.7E-06 46.8 3.8 26 211-236 14-39 (223)
381 1g29_1 MALK, maltose transport 91.3 0.14 4.9E-06 50.6 4.2 24 211-234 29-52 (372)
382 2www_A Methylmalonic aciduria 91.2 0.17 5.7E-06 49.8 4.6 28 210-237 73-100 (349)
383 2wjg_A FEOB, ferrous iron tran 91.2 0.1 3.5E-06 45.8 2.7 23 212-234 8-30 (188)
384 1z2a_A RAS-related protein RAB 91.2 0.14 4.7E-06 43.8 3.5 23 212-234 6-28 (168)
385 1x6v_B Bifunctional 3'-phospho 91.1 0.14 4.8E-06 54.1 4.0 27 210-236 51-77 (630)
386 2gza_A Type IV secretion syste 91.0 0.12 4E-06 51.1 3.3 34 212-246 176-209 (361)
387 1oxx_K GLCV, glucose, ABC tran 91.0 0.11 3.7E-06 51.1 3.0 25 210-234 30-54 (353)
388 2yv5_A YJEQ protein; hydrolase 91.0 0.16 5.3E-06 48.9 4.0 33 197-235 156-188 (302)
389 2nzj_A GTP-binding protein REM 90.9 0.12 4E-06 44.6 2.8 23 212-234 5-27 (175)
390 1u8z_A RAS-related protein RAL 90.8 0.13 4.3E-06 43.9 3.0 22 213-234 6-27 (168)
391 1kao_A RAP2A; GTP-binding prot 90.8 0.13 4.4E-06 43.8 3.0 22 213-234 5-26 (167)
392 1svi_A GTP-binding protein YSX 90.8 0.096 3.3E-06 46.3 2.2 25 210-234 22-46 (195)
393 3con_A GTPase NRAS; structural 90.8 0.13 4.3E-06 45.3 3.0 22 213-234 23-44 (190)
394 1fzq_A ADP-ribosylation factor 90.7 0.19 6.4E-06 44.0 4.0 25 210-234 15-39 (181)
395 2gj8_A MNME, tRNA modification 90.7 0.12 4.1E-06 44.8 2.7 23 212-234 5-27 (172)
396 1z08_A RAS-related protein RAB 90.7 0.13 4.5E-06 44.0 3.0 23 212-234 7-29 (170)
397 3fkq_A NTRC-like two-domain pr 90.6 0.21 7.1E-06 49.6 4.7 38 209-246 141-179 (373)
398 1ek0_A Protein (GTP-binding pr 90.6 0.14 4.6E-06 43.8 3.0 22 213-234 5-26 (170)
399 1bif_A 6-phosphofructo-2-kinas 90.6 0.19 6.3E-06 51.7 4.4 28 211-238 39-66 (469)
400 1c1y_A RAS-related protein RAP 90.6 0.14 4.7E-06 43.7 3.0 22 213-234 5-26 (167)
401 1r8s_A ADP-ribosylation factor 90.6 0.14 4.9E-06 43.5 3.1 21 214-234 3-23 (164)
402 4f4c_A Multidrug resistance pr 90.5 0.41 1.4E-05 55.7 7.7 23 211-233 1105-1127(1321)
403 3q85_A GTP-binding protein REM 90.5 0.13 4.5E-06 44.0 2.8 21 213-233 4-24 (169)
404 1z0j_A RAB-22, RAS-related pro 90.5 0.14 4.7E-06 43.8 3.0 22 213-234 8-29 (170)
405 1m7b_A RND3/RHOE small GTP-bin 90.5 0.14 4.6E-06 44.9 2.9 23 212-234 8-30 (184)
406 2erx_A GTP-binding protein DI- 90.5 0.13 4.4E-06 44.1 2.7 22 213-234 5-26 (172)
407 1ky3_A GTP-binding protein YPT 90.4 0.14 4.8E-06 44.4 3.0 24 211-234 8-31 (182)
408 1g16_A RAS-related protein SEC 90.4 0.14 4.9E-06 43.8 2.9 22 213-234 5-26 (170)
409 2obl_A ESCN; ATPase, hydrolase 90.4 0.24 8.3E-06 48.5 4.9 29 210-238 70-98 (347)
410 2lkc_A Translation initiation 90.4 0.15 5.3E-06 44.0 3.2 25 210-234 7-31 (178)
411 3tmk_A Thymidylate kinase; pho 90.4 0.18 6.2E-06 45.7 3.7 27 211-237 5-31 (216)
412 1nrj_B SR-beta, signal recogni 90.4 0.16 5.6E-06 45.8 3.4 26 210-235 11-36 (218)
413 1wms_A RAB-9, RAB9, RAS-relate 90.3 0.15 5E-06 44.1 3.0 23 212-234 8-30 (177)
414 3ihw_A Centg3; RAS, centaurin, 90.3 0.14 5E-06 44.9 3.0 22 213-234 22-43 (184)
415 1f2t_A RAD50 ABC-ATPase; DNA d 90.3 0.17 5.8E-06 42.9 3.3 24 212-235 24-47 (149)
416 2woo_A ATPase GET3; tail-ancho 90.3 0.26 8.7E-06 48.0 5.0 37 210-246 18-54 (329)
417 3q72_A GTP-binding protein RAD 90.3 0.13 4.5E-06 43.8 2.6 20 214-233 5-24 (166)
418 3cio_A ETK, tyrosine-protein k 90.3 0.31 1.1E-05 46.7 5.4 38 209-246 102-140 (299)
419 4akg_A Glutathione S-transfera 90.3 0.5 1.7E-05 58.3 8.3 158 212-381 1268-1452(2695)
420 2hxs_A RAB-26, RAS-related pro 90.2 0.15 5.2E-06 44.0 3.0 23 212-234 7-29 (178)
421 2oze_A ORF delta'; para, walke 90.2 0.15 5.2E-06 48.7 3.2 48 196-246 22-72 (298)
422 3t1o_A Gliding protein MGLA; G 90.2 0.16 5.4E-06 44.7 3.1 27 212-238 15-41 (198)
423 1r2q_A RAS-related protein RAB 90.1 0.16 5.3E-06 43.4 3.0 22 213-234 8-29 (170)
424 3vr4_D V-type sodium ATPase su 90.1 0.27 9.1E-06 49.6 4.9 25 213-237 153-177 (465)
425 2r9v_A ATP synthase subunit al 90.1 0.35 1.2E-05 49.4 5.8 24 212-235 176-200 (515)
426 4b3f_X DNA-binding protein smu 90.1 0.22 7.6E-06 53.3 4.7 37 195-235 193-229 (646)
427 2fn4_A P23, RAS-related protei 90.1 0.22 7.6E-06 43.0 3.9 25 210-234 8-32 (181)
428 3bfv_A CAPA1, CAPB2, membrane 90.1 0.32 1.1E-05 45.8 5.3 38 209-246 80-118 (271)
429 2orv_A Thymidine kinase; TP4A 90.0 0.49 1.7E-05 43.1 6.2 105 211-329 19-125 (234)
430 1m2o_B GTP-binding protein SAR 90.0 0.16 5.4E-06 44.9 2.9 22 213-234 25-46 (190)
431 1upt_A ARL1, ADP-ribosylation 90.0 0.16 5.6E-06 43.5 3.0 23 212-234 8-30 (171)
432 3c5c_A RAS-like protein 12; GD 90.0 0.16 5.5E-06 44.6 3.0 22 213-234 23-44 (187)
433 2qe7_A ATP synthase subunit al 90.0 0.42 1.4E-05 48.7 6.3 25 211-235 162-187 (502)
434 1z0f_A RAB14, member RAS oncog 89.9 0.17 5.7E-06 43.8 3.0 24 211-234 15-38 (179)
435 3pqc_A Probable GTP-binding pr 89.9 0.2 6.7E-06 44.0 3.5 24 211-234 23-46 (195)
436 2iwr_A Centaurin gamma 1; ANK 89.9 0.14 4.8E-06 44.4 2.5 22 213-234 9-30 (178)
437 4gzl_A RAS-related C3 botulinu 89.8 0.19 6.6E-06 44.8 3.4 23 212-234 31-53 (204)
438 3kkq_A RAS-related protein M-R 89.8 0.16 5.6E-06 44.2 2.8 24 211-234 18-41 (183)
439 2cxx_A Probable GTP-binding pr 89.8 0.16 5.6E-06 44.4 2.8 22 213-234 3-24 (190)
440 3bc1_A RAS-related protein RAB 89.8 0.17 5.8E-06 44.3 3.0 24 211-234 11-34 (195)
441 1c9k_A COBU, adenosylcobinamid 89.7 0.15 5.1E-06 44.7 2.5 21 214-234 2-22 (180)
442 2woj_A ATPase GET3; tail-ancho 89.7 0.36 1.2E-05 47.4 5.5 36 211-246 18-55 (354)
443 2y8e_A RAB-protein 6, GH09086P 89.7 0.18 6E-06 43.6 2.9 22 213-234 16-37 (179)
444 2bme_A RAB4A, RAS-related prot 89.7 0.18 6E-06 44.1 2.9 24 211-234 10-33 (186)
445 2oil_A CATX-8, RAS-related pro 89.6 0.18 6.1E-06 44.4 3.0 24 211-234 25-48 (193)
446 1pui_A ENGB, probable GTP-bind 89.6 0.12 4E-06 46.4 1.8 25 210-234 25-49 (210)
447 4dsu_A GTPase KRAS, isoform 2B 89.5 0.18 6.2E-06 44.0 3.0 22 213-234 6-27 (189)
448 2cjw_A GTP-binding protein GEM 89.5 0.18 6E-06 44.7 2.8 22 212-233 7-28 (192)
449 1byi_A Dethiobiotin synthase; 89.5 0.25 8.7E-06 44.7 4.0 33 212-244 2-35 (224)
450 1mh1_A RAC1; GTP-binding, GTPa 89.5 0.19 6.4E-06 43.8 3.0 22 213-234 7-28 (186)
451 3ch4_B Pmkase, phosphomevalona 89.5 0.27 9.3E-06 43.8 4.0 26 210-235 10-35 (202)
452 1ihu_A Arsenical pump-driving 89.4 0.26 8.9E-06 52.2 4.6 37 210-246 7-43 (589)
453 2a9k_A RAS-related protein RAL 89.4 0.19 6.5E-06 43.7 3.0 23 212-234 19-41 (187)
454 2dpy_A FLII, flagellum-specifi 89.4 0.3 1E-05 49.4 4.8 36 210-246 156-191 (438)
455 1h65_A Chloroplast outer envel 89.4 0.31 1.1E-05 45.8 4.6 26 209-234 37-62 (270)
456 2efe_B Small GTP-binding prote 89.4 0.19 6.6E-06 43.5 3.0 23 212-234 13-35 (181)
457 3def_A T7I23.11 protein; chlor 89.4 0.29 1E-05 45.8 4.4 25 210-234 35-59 (262)
458 3bwd_D RAC-like GTP-binding pr 89.4 0.19 6.6E-06 43.6 3.0 22 213-234 10-31 (182)
459 1tf7_A KAIC; homohexamer, hexa 89.3 0.23 8E-06 51.7 4.0 37 210-246 38-75 (525)
460 2atv_A RERG, RAS-like estrogen 89.3 0.19 6.6E-06 44.4 3.0 23 212-234 29-51 (196)
461 3t5g_A GTP-binding protein RHE 89.3 0.19 6.7E-06 43.6 2.9 23 211-233 6-28 (181)
462 2qnr_A Septin-2, protein NEDD5 89.3 0.17 5.7E-06 48.6 2.7 20 214-233 21-40 (301)
463 4f4c_A Multidrug resistance pr 89.3 0.53 1.8E-05 54.8 7.3 26 210-235 443-468 (1321)
464 3g5u_A MCG1178, multidrug resi 89.2 0.71 2.4E-05 53.5 8.3 26 210-235 415-440 (1284)
465 2xau_A PRE-mRNA-splicing facto 89.2 1.3 4.4E-05 48.4 10.0 34 196-233 98-131 (773)
466 2g6b_A RAS-related protein RAB 89.2 0.2 6.8E-06 43.4 3.0 23 212-234 11-33 (180)
467 3dz8_A RAS-related protein RAB 89.2 0.2 7E-06 44.0 3.0 22 213-234 25-46 (191)
468 3tw8_B RAS-related protein RAB 89.2 0.22 7.4E-06 43.1 3.2 24 210-233 8-31 (181)
469 1f6b_A SAR1; gtpases, N-termin 89.2 0.17 5.8E-06 45.0 2.5 22 212-233 26-47 (198)
470 3clv_A RAB5 protein, putative; 89.2 0.2 6.8E-06 44.3 3.0 23 212-234 8-30 (208)
471 3cbq_A GTP-binding protein REM 89.2 0.15 5.2E-06 45.3 2.1 22 211-232 23-44 (195)
472 2fg5_A RAB-22B, RAS-related pr 89.1 0.2 6.9E-06 44.2 2.9 23 212-234 24-46 (192)
473 2ew1_A RAS-related protein RAB 89.1 0.2 6.8E-06 44.8 2.9 24 211-234 26-49 (201)
474 1gwn_A RHO-related GTP-binding 89.1 0.2 6.9E-06 44.9 2.9 24 211-234 28-51 (205)
475 4i1u_A Dephospho-COA kinase; s 89.1 0.23 7.8E-06 44.7 3.2 23 211-233 9-31 (210)
476 2npi_A Protein CLP1; CLP1-PCF1 89.0 0.18 6.2E-06 51.5 2.8 26 210-235 137-162 (460)
477 1vg8_A RAS-related protein RAB 89.0 0.21 7.1E-06 44.5 3.0 24 211-234 8-31 (207)
478 2bov_A RAla, RAS-related prote 88.9 0.21 7.2E-06 44.4 3.0 24 211-234 14-37 (206)
479 1zd9_A ADP-ribosylation factor 88.9 0.21 7.3E-06 43.8 3.0 22 213-234 24-45 (188)
480 1u0l_A Probable GTPase ENGC; p 88.9 0.27 9.3E-06 47.1 3.9 34 197-235 160-193 (301)
481 2gf9_A RAS-related protein RAB 88.9 0.22 7.4E-06 43.7 3.0 23 212-234 23-45 (189)
482 3k9g_A PF-32 protein; ssgcid, 88.9 0.35 1.2E-05 45.3 4.6 36 210-246 26-62 (267)
483 3oes_A GTPase rhebl1; small GT 88.9 0.21 7.3E-06 44.3 2.9 24 211-234 24-47 (201)
484 2a5j_A RAS-related protein RAB 88.8 0.22 7.5E-06 43.8 3.0 22 213-234 23-44 (191)
485 2rcn_A Probable GTPase ENGC; Y 88.8 0.21 7.3E-06 49.0 3.1 25 212-236 216-240 (358)
486 2fh5_B SR-beta, signal recogni 88.8 0.22 7.4E-06 44.8 3.0 24 211-234 7-30 (214)
487 3reg_A RHO-like small GTPase; 88.8 0.22 7.6E-06 43.9 3.0 23 212-234 24-46 (194)
488 2qag_B Septin-6, protein NEDD5 88.7 0.2 6.8E-06 50.3 2.8 21 214-234 45-65 (427)
489 3la6_A Tyrosine-protein kinase 88.7 0.53 1.8E-05 44.7 5.7 38 209-246 90-128 (286)
490 1z06_A RAS-related protein RAB 88.7 0.23 7.8E-06 43.6 3.0 23 212-234 21-43 (189)
491 1zbd_A Rabphilin-3A; G protein 88.7 0.21 7.2E-06 44.4 2.7 23 212-234 9-31 (203)
492 2gk6_A Regulator of nonsense t 88.7 0.33 1.1E-05 51.8 4.7 47 195-246 184-230 (624)
493 2gf0_A GTP-binding protein DI- 88.6 0.23 7.8E-06 43.8 2.9 22 212-233 9-30 (199)
494 3ez2_A Plasmid partition prote 88.6 0.57 2E-05 46.8 6.2 28 209-236 106-134 (398)
495 2p5s_A RAS and EF-hand domain 88.5 0.23 8E-06 44.0 3.0 24 211-234 28-51 (199)
496 3llu_A RAS-related GTP-binding 88.5 0.21 7.1E-06 44.3 2.6 23 212-234 21-43 (196)
497 2g3y_A GTP-binding protein GEM 88.5 0.22 7.7E-06 44.9 2.8 22 212-233 38-59 (211)
498 2h17_A ADP-ribosylation factor 88.5 0.21 7.2E-06 43.5 2.6 23 212-234 22-44 (181)
499 3bs4_A Uncharacterized protein 88.5 1.7 5.8E-05 40.4 8.8 50 197-246 7-56 (260)
500 3euj_A Chromosome partition pr 88.5 0.23 7.7E-06 50.8 3.1 25 212-236 30-54 (483)
No 1
>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}
Probab=100.00 E-value=5.5e-47 Score=338.28 Aligned_cols=181 Identities=40% Similarity=0.693 Sum_probs=157.5
Q ss_pred CCCCCCCCCCCCCCCCcccEEEcCcccccccchHHHHHHHHhhCCCeeEeeC-CCCCCCcchHHHHHHHHhcceEEEEec
Q 009306 1 MASSSHPYASLTNPEIKYDVFLSFGGEDTRESFTSHLYSALSRETVETFIDD-DLRRGDEISQSLLDAIEASSISIIIFS 79 (538)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~dvFiSy~~~D~~~~~~~~l~~~l~~~g~~~~~d~-~~~~g~~~~~~i~~~i~~s~~~i~v~S 79 (538)
||.++|+++|++.+.++|||||||+|+|+|..|+.||+++|+++||++|+|+ ++++|+.|.++|.+||++|+++|+|||
T Consensus 19 ~~~~~s~~~s~~~~~~~yDVFISfrg~D~r~~Fv~~L~~aL~~~GI~~f~D~~el~~G~~I~~~l~~aIe~Sri~IvV~S 98 (204)
T 3ozi_A 19 DAISDSTNPSGSFPSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIIS 98 (204)
T ss_dssp ---------------CCCCEEEEECHHHHTTTHHHHHHHHHHHTTCCEEEEETTTCCGGGTTTTHHHHHHHCSEEEEEEC
T ss_pred cccccCCCCcCCCCCcCCeEEEeccccCCCHHHHHHHHHHHHHCCCcEEEeCCccCCCCchHHHHHHHHHhCcEeeEEEE
Confidence 4667777778888899999999999999998999999999999999999998 999999999999999999999999999
Q ss_pred cCcccchhhHHHHHHHHHHHhh-cCCeEEEEEEeecCCcccccCCchHHHHHHHHhhCh-hhHHHHHHHhhhhccccCcc
Q 009306 80 ESYASSRWCLDELLKILECKKE-YAQIVVPVFYRVDPSHVRKQTGNFGDSFLKLEERFP-DKMQSWRNALTEAADLSGFD 157 (538)
Q Consensus 80 ~~y~~s~~c~~El~~~~~~~~~-~~~~v~pv~~~v~~~~v~~~~~~~~~~~~~~~~~~~-~~~~~w~~al~~~~~~~g~~ 157 (538)
++|++|.||++||.+|++|.+. ++++|+||||+|+|++||+|+|+|+++|.+|++++. +++++|+.||+++++++||+
T Consensus 99 ~nYa~S~WCl~EL~~I~e~~~~~~~~~ViPIFY~VdPs~Vr~q~g~fg~af~~~~~~~~~~~v~~Wr~AL~~va~lsG~~ 178 (204)
T 3ozi_A 99 SGYADSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKFDGQTIQNWKDALKKVGDLKGWH 178 (204)
T ss_dssp TTGGGCHHHHHHHHHHHHHHHHCTTSEECCEEESSCHHHHHHTCTTHHHHHHHHTTTSCHHHHHHHHHHHHHHHTSCBEE
T ss_pred cccccCcHHHHHHHHHHHHHHhcCCeeeEEEEeecCHHHHHhccccHHHHHHHHHHhhCHHHHHHHHHHHHHHhccCcee
Confidence 9999999999999999999865 578999999999999999999999999999998875 45999999999999999999
Q ss_pred cCCCChhhHHHHHHHHhhhccccc
Q 009306 158 SLVVSPESALIEEIVNAILKRLDD 181 (538)
Q Consensus 158 ~~~~~~e~~~i~~i~~~~~~~~~~ 181 (538)
+.....+.+++++|+++++++++.
T Consensus 179 ~~~~~~e~~~i~~Iv~di~~kl~~ 202 (204)
T 3ozi_A 179 IGKNDKQGAIADKVSADIWSHISK 202 (204)
T ss_dssp ECTTSCHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHhcc
Confidence 988776899999999999988753
No 2
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}
Probab=100.00 E-value=3.2e-45 Score=322.34 Aligned_cols=169 Identities=44% Similarity=0.717 Sum_probs=142.1
Q ss_pred CCCcccEEEcCcccccccchHHHHHHHHhhCCCeeEeeC-CCCCCCcchHHHHHHHHhcceEEEEeccCcccchhhHHHH
Q 009306 14 PEIKYDVFLSFGGEDTRESFTSHLYSALSRETVETFIDD-DLRRGDEISQSLLDAIEASSISIIIFSESYASSRWCLDEL 92 (538)
Q Consensus 14 ~~~~~dvFiSy~~~D~~~~~~~~l~~~l~~~g~~~~~d~-~~~~g~~~~~~i~~~i~~s~~~i~v~S~~y~~s~~c~~El 92 (538)
..++|||||||+|+|+|++|++||+++|+++||++|+|+ ++++|+.|.++|.+||++|+++|+|||+||++|+||++||
T Consensus 5 ~~~~yDVFiSfrg~D~r~~Fv~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~l~~aIe~Sri~IvV~S~ny~~S~WCl~EL 84 (176)
T 3jrn_A 5 TATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCLDEL 84 (176)
T ss_dssp --CCEEEEEEECHHHHTTTHHHHHHHHHHHTTCCEECCCC--------------CCTTEEEEEEEECTTTTTCHHHHHHH
T ss_pred CCCCCeEEEECcCcccChHHHHHHHHHHHHCCCEEEEEcccccCCCchHHHHHHHHHhCCEEEEEecCCcCCChhHHHHH
Confidence 568999999999999999999999999999999999997 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCeEEEEEEeecCCcccccCCchHHHHHHHHhhC-hhhHHHHHHHhhhhccccCcccCCCChhhHHHHHH
Q 009306 93 LKILECKKEYAQIVVPVFYRVDPSHVRKQTGNFGDSFLKLEERF-PDKMQSWRNALTEAADLSGFDSLVVSPESALIEEI 171 (538)
Q Consensus 93 ~~~~~~~~~~~~~v~pv~~~v~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~w~~al~~~~~~~g~~~~~~~~e~~~i~~i 171 (538)
.+|++|.+.++++|+||||+|+|++||+|+|+|+++|.+|+.+. .+++++|+.||+++++++|+++. .+ |+++|++|
T Consensus 85 ~~i~~~~~~~~~~ViPIfy~V~ps~Vr~q~g~fg~af~~~~~~~~~~~~~~Wr~AL~~va~~~G~~~~-~~-e~~~i~~I 162 (176)
T 3jrn_A 85 VTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASREDPEKVLKWRQALTNFAQLSGDCSG-DD-DSKLVDKI 162 (176)
T ss_dssp HHHHHHHHTTSCEEEEEECSSCHHHHHHTCTHHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSCCEECC-SC-HHHHHHHH
T ss_pred HHHHhhhccCCCEEEEEEecCCHHHhhhccCcHHHHHHHHHhccCHHHHHHHHHHHHHHhcccceecC-CC-HHHHHHHH
Confidence 99999998889999999999999999999999999999998873 35699999999999999999983 34 99999999
Q ss_pred HHhhhccccccCC
Q 009306 172 VNAILKRLDDTFH 184 (538)
Q Consensus 172 ~~~~~~~~~~~~~ 184 (538)
++++.+.+.+++|
T Consensus 163 v~~v~~~l~~~~~ 175 (176)
T 3jrn_A 163 ANEISNKKTIYAT 175 (176)
T ss_dssp HHHHHTTCC----
T ss_pred HHHHHHHhcCCCC
Confidence 9999999887654
No 3
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=3.9e-40 Score=351.47 Aligned_cols=300 Identities=16% Similarity=0.140 Sum_probs=224.6
Q ss_pred eeccchhHHHHHhhhcC-CCCceEEEEeccCCCchhHHHHHHHH----hhccceeeEEEEeehhhhhhcCChHHHHHHHH
Q 009306 191 VGVRLPMKEIESLLRTG-STNVYKLGIWGIGGIGKTTIAGAIFN----KISRHFSGSYFARNVREAEETCRLGDLRQQLL 265 (538)
Q Consensus 191 vGR~~~l~~l~~~L~~~-~~~~~~v~I~G~~GiGKTtLa~~~~~----~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~ 265 (538)
+||+.++++|.++|..+ ....++|+|+||||+||||||+++|+ +++.+|++++|+. ++.... .++..+++.++
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~-vs~~~~-~~~~~~~~~il 208 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLK-DSGTAP-KSTFDLFTDIL 208 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEE-CCCCST-THHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEE-ECCCCC-CCHHHHHHHHH
Confidence 49999999999999754 34589999999999999999999996 6888999999995 332211 35778889999
Q ss_pred HHHhcCCC--CC-----CchhhcHHHHHHHhcCC-CeEEEEecCCChHHHHHHhcCcCCCCCCCEEEEeccchhhhhhcC
Q 009306 266 STLLNDGN--VK-----NFLNTDLNFQSRRLTRK-KVLIVFDDVDHPRQIKILVGRLDLFASGSRIIITTRDRQVLANCG 337 (538)
Q Consensus 266 ~~l~~~~~--~~-----~~~~~~~~~l~~~l~~k-~~LlVlDdv~~~~~~~~l~~~l~~~~~~~~iiiTtR~~~~~~~~~ 337 (538)
.+++.... .. .+...+...+++.+.++ ++||||||||+..++ .+.. .+|++||||||+..++..++
T Consensus 209 ~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~~-----~~gs~ilvTTR~~~v~~~~~ 282 (549)
T 2a5y_B 209 LMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWAQ-----ELRLRCLVTTRDVEISNAAS 282 (549)
T ss_dssp HHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHHH-----HTTCEEEEEESBGGGGGGCC
T ss_pred HHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-cccc-----cCCCEEEEEcCCHHHHHHcC
Confidence 98876532 11 22344578889999996 999999999998876 3332 27999999999999888765
Q ss_pred -CCeeEEcCCCCHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhcCCcHHHHHHHHHhcCCCHHHHHHHHHH-hhcCCC
Q 009306 338 -VDEVYQMEELVHDDALRLFSRHAFGGDHPHESHTELACKTIKYARGVPLALEVLGRYLYGKRREVWENAKSK-WETAPP 415 (538)
Q Consensus 338 -~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~L~~~~~~~~~~~l~~-l~~~~~ 415 (538)
...+|+|++|+.+++++||.++++.... .+...+.+.+|+++|+|+||||+.+|+.|+.+.. .|...+.. +.....
T Consensus 283 ~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~w-~~~~~l~~~l~~~~~ 360 (549)
T 2a5y_B 283 QTCEFIEVTSLEIDECYDFLEAYGMPMPV-GEKEEDVLNKTIELSSGNPATLMMFFKSCEPKTF-EKMAQLNNKLESRGL 360 (549)
T ss_dssp SCEEEEECCCCCHHHHHHHHHHTSCCCC---CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSSH-HHHHHHHHHHHHHCS
T ss_pred CCCeEEECCCCCHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHHhCCChHHHHHHHHHhccchH-HHHHHhHHHhhcccH
Confidence 3468999999999999999999876532 3567788999999999999999999999987743 33333332 222123
Q ss_pred CcHHHHHHHhHhCCC-----------HHhHHHhhccccccCCCCHHHHHHHHHhC--CCC-----------hHHHHHHHh
Q 009306 416 KGIQDALKISYDGLD-----------DKEQNIFLDIACFFIDEDRDTATKFLDDC--EFF-----------ATSAIEVLV 471 (538)
Q Consensus 416 ~~v~~~l~~s~~~L~-----------~~~k~~l~~la~f~~~~~~~~l~~l~~~~--~~~-----------~~~~l~~L~ 471 (538)
..+..++..||+.|+ +.++.+|.+||+||.+++.+ ..+|.+. |+. ...+++.|+
T Consensus 361 ~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~--i~~w~a~~~G~i~~~~~~~~~~~~~~~l~~L~ 438 (549)
T 2a5y_B 361 VGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP--VKLWSCVIPVDICSNEEEQLDDEVADRLKRLS 438 (549)
T ss_dssp STTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE--HHHHHHHSCC-------CCCTHHHHHHHHHTT
T ss_pred HHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee--eeeeeeeccceeccCCCCCCHHHHHHHHHHHH
Confidence 344444455555554 44455555999999887766 5566665 332 223799999
Q ss_pred hCCceeEecC---CcEEecHHHHHHHHHHHhhcC
Q 009306 472 DKHLITISVL---NKIEMHYLLRAMGREIVRQES 502 (538)
Q Consensus 472 ~~~Li~~~~~---~~~~~H~lv~~~~~~~~~~~~ 502 (538)
++|||+.... ++|.|||+||+||++++.+++
T Consensus 439 ~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 439 KRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp TBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHH
T ss_pred HcCCeeEecCCCceEEEeChHHHHHHHHHHHHHH
Confidence 9999997543 469999999999998876653
No 4
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.2e-36 Score=356.19 Aligned_cols=307 Identities=20% Similarity=0.243 Sum_probs=244.2
Q ss_pred cCCCCCCCceeccchhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHh---hccceeeEE-EEeehhhhhhcCCh
Q 009306 182 TFHSENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNK---ISRHFSGSY-FARNVREAEETCRL 257 (538)
Q Consensus 182 ~~~~~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~---~~~~f~~~~-~~~~~~~~~~~~~~ 257 (538)
..|..+..||||+.++++|.++|....++.++++|+||||+||||||++++++ ...+|...+ |+. +.... ....
T Consensus 118 ~~p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~-~~~~~-~~~~ 195 (1249)
T 3sfz_A 118 GVPQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVS-IGKQD-KSGL 195 (1249)
T ss_dssp TCCCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEE-CCSCC-HHHH
T ss_pred CCCCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEE-ECCcC-chHH
Confidence 34566788999999999999999766667899999999999999999999987 355576555 554 33211 1223
Q ss_pred HHHHHHHHHHHhcCCC----CCCchhhcHHHHHHHhcCC--CeEEEEecCCChHHHHHHhcCcCCCCCCCEEEEeccchh
Q 009306 258 GDLRQQLLSTLLNDGN----VKNFLNTDLNFQSRRLTRK--KVLIVFDDVDHPRQIKILVGRLDLFASGSRIIITTRDRQ 331 (538)
Q Consensus 258 ~~l~~~l~~~l~~~~~----~~~~~~~~~~~l~~~l~~k--~~LlVlDdv~~~~~~~~l~~~l~~~~~~~~iiiTtR~~~ 331 (538)
...+..++..+..... .....+.....++..+.++ ++||||||+|+..+++.+ ++|++||||||++.
T Consensus 196 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~ 268 (1249)
T 3sfz_A 196 LMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKS 268 (1249)
T ss_dssp HHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTT
T ss_pred HHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHH
Confidence 3445556666654332 1245666777777777766 999999999998776543 67999999999998
Q ss_pred hhhh-cCCCeeEEcCC-CCHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhcCCcHHHHHHHHHhcCCCHHHHHHHHHH
Q 009306 332 VLAN-CGVDEVYQMEE-LVHDDALRLFSRHAFGGDHPHESHTELACKTIKYARGVPLALEVLGRYLYGKRREVWENAKSK 409 (538)
Q Consensus 332 ~~~~-~~~~~~~~l~~-L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~L~~~~~~~~~~~l~~ 409 (538)
++.. ......+++++ |+.+|+++||...++.. .+...+.+.+|+++|+|+||||+++|++|+.++ ..|...+..
T Consensus 269 ~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~---~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~~ 344 (1249)
T 3sfz_A 269 VTDSVMGPKHVVPVESGLGREKGLEILSLFVNMK---KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLRQ 344 (1249)
T ss_dssp TTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSC---STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHHH
T ss_pred HHHhhcCCceEEEecCCCCHHHHHHHHHHhhCCC---hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHHHHH
Confidence 8744 34557889996 99999999999988332 234456789999999999999999999998766 468888888
Q ss_pred hhcCCC-----------CcHHHHHHHhHhCCCHHhHHHhhccccccCC--CCHHHHHHHHHhCCCChHHHHHHHhhCCce
Q 009306 410 WETAPP-----------KGIQDALKISYDGLDDKEQNIFLDIACFFID--EDRDTATKFLDDCEFFATSAIEVLVDKHLI 476 (538)
Q Consensus 410 l~~~~~-----------~~v~~~l~~s~~~L~~~~k~~l~~la~f~~~--~~~~~l~~l~~~~~~~~~~~l~~L~~~~Li 476 (538)
+..... ..+..+|..||+.|++++|.||++||+||++ ++.+.+..+|..++......++.|+++|||
T Consensus 345 l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~~sl~ 424 (1249)
T 3sfz_A 345 LQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLETEEVEDILQEFVNKSLL 424 (1249)
T ss_dssp HHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSC
T ss_pred HhhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCCHHHHHHHHHHHHhccce
Confidence 755432 3588999999999999999999999999986 578899999987777788899999999999
Q ss_pred eEecCCc---EEecHHHHHHHHHHHhhc
Q 009306 477 TISVLNK---IEMHYLLRAMGREIVRQE 501 (538)
Q Consensus 477 ~~~~~~~---~~~H~lv~~~~~~~~~~~ 501 (538)
+...++. |+||+++|+|+++.+.++
T Consensus 425 ~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 425 FCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp EEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred EEecCCCceEEEecHHHHHHHHhhhhHH
Confidence 9876665 999999999999987654
No 5
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=6.3e-36 Score=323.17 Aligned_cols=333 Identities=18% Similarity=0.205 Sum_probs=246.4
Q ss_pred cCCCCCCCceeccchhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhh---cccee-eEEEEeehhhhhhcCCh
Q 009306 182 TFHSENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKI---SRHFS-GSYFARNVREAEETCRL 257 (538)
Q Consensus 182 ~~~~~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~---~~~f~-~~~~~~~~~~~~~~~~~ 257 (538)
..|..+..||||+.++++|.++|....++.++++|+||||+||||||.+++++. ..+|+ .++|+.. ..... ..+
T Consensus 118 ~~P~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~-~~~~~-~~~ 195 (591)
T 1z6t_A 118 GVPQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSV-GKQDK-SGL 195 (591)
T ss_dssp TCCCCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEE-ESCCH-HHH
T ss_pred CCCCCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEEC-CCCch-HHH
Confidence 345667889999999999999998655568899999999999999999999864 66785 5677653 22111 112
Q ss_pred HHHHHHHHHHHhcCC----CCCCchhhcHHHHHHHhcC--CCeEEEEecCCChHHHHHHhcCcCCCCCCCEEEEeccchh
Q 009306 258 GDLRQQLLSTLLNDG----NVKNFLNTDLNFQSRRLTR--KKVLIVFDDVDHPRQIKILVGRLDLFASGSRIIITTRDRQ 331 (538)
Q Consensus 258 ~~l~~~l~~~l~~~~----~~~~~~~~~~~~l~~~l~~--k~~LlVlDdv~~~~~~~~l~~~l~~~~~~~~iiiTtR~~~ 331 (538)
...+..+...+.... ......+.....+...+.+ +++||||||+|+..+++.+ +++++||||||+..
T Consensus 196 ~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l-------~~~~~ilvTsR~~~ 268 (591)
T 1z6t_A 196 LMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF-------DSQCQILLTTRDKS 268 (591)
T ss_dssp HHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT-------CSSCEEEEEESCGG
T ss_pred HHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh-------cCCCeEEEECCCcH
Confidence 222223333443211 1124455666777777765 7899999999997766532 57899999999998
Q ss_pred hhhhcCCCeeEEc---CCCCHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhcCCcHHHHHHHHHhcCCCHHHHHHHHH
Q 009306 332 VLANCGVDEVYQM---EELVHDDALRLFSRHAFGGDHPHESHTELACKTIKYARGVPLALEVLGRYLYGKRREVWENAKS 408 (538)
Q Consensus 332 ~~~~~~~~~~~~l---~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~L~~~~~~~~~~~l~ 408 (538)
++..+. ...+++ ++|+.+|+.+||...++.. .....+.+.+|+++|+|+||||+++|+.++.+. ..|...+.
T Consensus 269 ~~~~~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~---~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~~~l~ 343 (591)
T 1z6t_A 269 VTDSVM-GPKYVVPVESSLGKEKGLEILSLFVNMK---KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEYYLK 343 (591)
T ss_dssp GGTTCC-SCEEEEECCSSCCHHHHHHHHHHHHTSC---GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHHHHHH
T ss_pred HHHhcC-CCceEeecCCCCCHHHHHHHHHHHhCCC---cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc-hhHHHHHH
Confidence 776543 334554 5899999999999988431 222345789999999999999999999997654 36888888
Q ss_pred HhhcCC-----------CCcHHHHHHHhHhCCCHHhHHHhhccccccCC--CCHHHHHHHHHhCCCChHHHHHHHhhCCc
Q 009306 409 KWETAP-----------PKGIQDALKISYDGLDDKEQNIFLDIACFFID--EDRDTATKFLDDCEFFATSAIEVLVDKHL 475 (538)
Q Consensus 409 ~l~~~~-----------~~~v~~~l~~s~~~L~~~~k~~l~~la~f~~~--~~~~~l~~l~~~~~~~~~~~l~~L~~~~L 475 (538)
.+.... ..++..++..||+.|++++|.||+++|||+.+ ++.+.+..+|..+.......++.|+++||
T Consensus 344 ~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~~~~~~~~l~~L~~~~L 423 (591)
T 1z6t_A 344 QLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDMETEEVEDILQEFVNKSL 423 (591)
T ss_dssp HHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccCHHHHHHHHHHHHhCcC
Confidence 776432 13688999999999999999999999999875 67788888897665567788999999999
Q ss_pred eeEecCC---cEEecHHHHHHHHHHHhhc-------------------CCCCCCCcccccCcchHHHHHccCCCc
Q 009306 476 ITISVLN---KIEMHYLLRAMGREIVRQE-------------------STNDPGKRSRLWHHKEVYKILSENRVS 528 (538)
Q Consensus 476 i~~~~~~---~~~~H~lv~~~~~~~~~~~-------------------~~~~~~~r~rl~~~~~i~~~l~~~~~~ 528 (538)
|....++ +|.||+++++++++....+ -...+..+.++|++..+++++..+..+
T Consensus 424 l~~~~~~~~~~~~~H~lv~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~a~~~~ 498 (591)
T 1z6t_A 424 LFCDRNGKSFRYYLHDLQVDFLTEKNCSQLQDLHKKIITQFQRYHQPHTLSPDQEDCMYWYNFLAYHMASAKMHK 498 (591)
T ss_dssp SEEEEETTEEEEECCHHHHHHHHHHTGGGHHHHHHHHHHHHTTTCCGGGCCTTSTTHHHHHHHHHHHHHHTTCHH
T ss_pred eEEecCCCccEEEEcHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCCCCCCCCCCEEeehhhHHHHHHhcCCHH
Confidence 9965433 6999999999999873210 012344566677777777777766554
No 6
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=1.2e-35 Score=322.24 Aligned_cols=306 Identities=14% Similarity=0.130 Sum_probs=227.0
Q ss_pred CCceeccchhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHH--hhccceee-EEEEeehhhhhhcCChHHHHHHH
Q 009306 188 EDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFN--KISRHFSG-SYFARNVREAEETCRLGDLRQQL 264 (538)
Q Consensus 188 ~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~--~~~~~f~~-~~~~~~~~~~~~~~~~~~l~~~l 264 (538)
+..|||+.++++|.++|... +..++++|+||||+||||||+++++ +++.+|+. ++|+. ++ .......++..+
T Consensus 128 k~~VGRe~eLeeL~elL~~~-d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVs-Vs---~~~d~~~IL~~L 202 (1221)
T 1vt4_I 128 KYNVSRLQPYLKLRQALLEL-RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN-LK---NCNSPETVLEML 202 (1221)
T ss_dssp CSCCCCHHHHHHHHHHHHHC-CSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEE-CC---CSSSHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHhcc-CCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEE-eC---CCCCHHHHHHHH
Confidence 45599999999999999753 3478999999999999999999997 46788987 66666 33 233445555555
Q ss_pred HHHHhcCC---CC--------CCchhhcHHHHHHHh---cCCCeEEEEecCCChHHHHHHhcCcCCCCCCCEEEEeccch
Q 009306 265 LSTLLNDG---NV--------KNFLNTDLNFQSRRL---TRKKVLIVFDDVDHPRQIKILVGRLDLFASGSRIIITTRDR 330 (538)
Q Consensus 265 ~~~l~~~~---~~--------~~~~~~~~~~l~~~l---~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~~~~iiiTtR~~ 330 (538)
...+.... .. ....+.....+++.+ .++++||||||||+.++++.+. +|++||||||+.
T Consensus 203 l~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~-------pGSRILVTTRd~ 275 (1221)
T 1vt4_I 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-------LSCKILLTTRFK 275 (1221)
T ss_dssp HHHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH-------SSCCEEEECSCS
T ss_pred HHHHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC-------CCeEEEEeccCh
Confidence 54332211 00 012334455566655 6799999999999998888752 689999999999
Q ss_pred hhhhhcCCCeeEEcC------CCCHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhcCCcHHHHHHHHHhcCC--CHHH
Q 009306 331 QVLANCGVDEVYQME------ELVHDDALRLFSRHAFGGDHPHESHTELACKTIKYARGVPLALEVLGRYLYGK--RREV 402 (538)
Q Consensus 331 ~~~~~~~~~~~~~l~------~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~L~~~--~~~~ 402 (538)
.++..+.....|+|+ +|+.+||++||..+. +.. ..++..+ .|+|+||||+++|+.|+.+ +...
T Consensus 276 ~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~-g~~-----~eeL~~e---ICgGLPLALkLaGs~Lr~k~~s~ee 346 (1221)
T 1vt4_I 276 QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL-DCR-----PQDLPRE---VLTTNPRRLSIIAESIRDGLATWDN 346 (1221)
T ss_dssp HHHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHH-CCC-----TTTHHHH---HCCCCHHHHHHHHHHHHHSCSSHHH
T ss_pred HHHHhcCCCeEEEecCccccCCcCHHHHHHHHHHHc-CCC-----HHHHHHH---HhCCCHHHHHHHHHHHhCCCCCHHH
Confidence 887543322355666 999999999999985 221 1223333 4999999999999999876 6777
Q ss_pred HHHHHHHhhcCCCCcHHHHHHHhHhCCCHHh-HHHhhccccccCC--CCHHHHHHHHHhCCC-ChHHHHHHHhhCCceeE
Q 009306 403 WENAKSKWETAPPKGIQDALKISYDGLDDKE-QNIFLDIACFFID--EDRDTATKFLDDCEF-FATSAIEVLVDKHLITI 478 (538)
Q Consensus 403 ~~~~l~~l~~~~~~~v~~~l~~s~~~L~~~~-k~~l~~la~f~~~--~~~~~l~~l~~~~~~-~~~~~l~~L~~~~Li~~ 478 (538)
|... ....+..+|+.||+.|++++ |.||++||+||.+ ++.+.+..+|.+++. .....++.|+++|||+.
T Consensus 347 W~~~-------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeGeedAe~~L~eLvdRSLLq~ 419 (1221)
T 1vt4_I 347 WKHV-------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK 419 (1221)
T ss_dssp HHHC-------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCSHHHHHHHHHHHTSSSSSB
T ss_pred HhcC-------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHHHHhhCCEEE
Confidence 8653 34679999999999999999 9999999999986 466788999987642 46778999999999998
Q ss_pred ec-CCcEEecHHHHHHHHHHHhhcCCCCCCCcccccCcchHHHHHccCC
Q 009306 479 SV-LNKIEMHYLLRAMGREIVRQESTNDPGKRSRLWHHKEVYKILSENR 526 (538)
Q Consensus 479 ~~-~~~~~~H~lv~~~~~~~~~~~~~~~~~~r~rl~~~~~i~~~l~~~~ 526 (538)
.. .++|+||+++++++ +.....+..++|++++..+.+++.+..
T Consensus 420 d~~~~rYrMHDLllELr-----~~~~e~~alHrRLvd~Y~~~~vf~~~~ 463 (1221)
T 1vt4_I 420 QPKESTISIPSIYLELK-----VKLENEYALHRSIVDHYNIPKTFDSDD 463 (1221)
T ss_dssp CSSSSEEBCCCHHHHHH-----HHHSCCTTHHHHHHHHHHHHHHCCCSS
T ss_pred eCCCCEEEehHHHHHHh-----cCCCcHHHHHHHHHHHHHhhCcCCCCC
Confidence 63 56899999998733 111234667778887777776665443
No 7
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}
Probab=99.96 E-value=8e-31 Score=230.52 Aligned_cols=120 Identities=22% Similarity=0.381 Sum_probs=110.5
Q ss_pred CCCCCcccEEEcCcccccccchHHHHHHHHhhCCCeeEeeC-CCCCCCcchHHHHHHHHhcceEEEEeccCcccchhhHH
Q 009306 12 TNPEIKYDVFLSFGGEDTRESFTSHLYSALSRETVETFIDD-DLRRGDEISQSLLDAIEASSISIIIFSESYASSRWCLD 90 (538)
Q Consensus 12 ~~~~~~~dvFiSy~~~D~~~~~~~~l~~~l~~~g~~~~~d~-~~~~g~~~~~~i~~~i~~s~~~i~v~S~~y~~s~~c~~ 90 (538)
..+.++|||||||+++| +..|+.+|+..|+++|+++|+|+ ++.+|+.|.++|.++|++|+++|+|+|++|++|.||+.
T Consensus 15 ~~~~~~~dvFISy~~~D-~~~~~~~L~~~L~~~gi~v~~D~~~l~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wc~~ 93 (154)
T 3h16_A 15 LTSAPPHDIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVVLSTHFFKKEWPQK 93 (154)
T ss_dssp ---CCSEEEEEEEEGGG-TTTTHHHHHHHHHHHTCCEECGGGEECTTCCHHHHHHHHHTSEEEEEEEEEHHHHTTCCCHH
T ss_pred cCCCCCceEEEECcccC-hHHHHHHHHHHHHHCCCcEEEcHHhCCCccHHHHHHHHHHHhCcEEEEEeCcchhcChHHHH
Confidence 45679999999999999 55899999999999999999999 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCeEEEEEEeecCCcccccCCchHHHHHHH
Q 009306 91 ELLKILECKKEYAQIVVPVFYRVDPSHVRKQTGNFGDSFLKL 132 (538)
Q Consensus 91 El~~~~~~~~~~~~~v~pv~~~v~~~~v~~~~~~~~~~~~~~ 132 (538)
|+..++++...++.+|+||||+++|++|++|.|.|+++|...
T Consensus 94 El~~~~~~~~~~~~~iiPV~~~v~p~~v~~~~~~~~~~~~~~ 135 (154)
T 3h16_A 94 ELDGLFQLESSGRSRILPIWHKVSKDEVASFSPTMADKLAFN 135 (154)
T ss_dssp HHHHHTCCCTTSCCCEEEEEESCCTGGGTTTCCCCCSSCCEE
T ss_pred HHHHHHHHHhcCCCEEEEEEecCCHHHHhhCCccHHHHHhhh
Confidence 999999987777789999999999999999999998776553
No 8
>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A
Probab=99.91 E-value=4e-26 Score=197.26 Aligned_cols=107 Identities=19% Similarity=0.327 Sum_probs=81.1
Q ss_pred CCCCCCCcccEEEcCcccccccchHHHHHHHHhh--CCCeeEeeC-CCCCCCcchHHHHHHHHhcceEEEEeccCcccch
Q 009306 10 SLTNPEIKYDVFLSFGGEDTRESFTSHLYSALSR--ETVETFIDD-DLRRGDEISQSLLDAIEASSISIIIFSESYASSR 86 (538)
Q Consensus 10 ~~~~~~~~~dvFiSy~~~D~~~~~~~~l~~~l~~--~g~~~~~d~-~~~~g~~~~~~i~~~i~~s~~~i~v~S~~y~~s~ 86 (538)
+|....+.|||||||+++| ..||.+|...|++ .|+++|+|+ |+.||+.|.++|.++|++|+++|+|+|++|++|.
T Consensus 3 ~~~r~~k~YDvFISy~~~D--~~~v~~L~~~Le~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~I~VlS~~y~~S~ 80 (146)
T 3ub2_A 3 GSSRWSKDYDVCVCHSEED--LVAAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQDP 80 (146)
T ss_dssp -CCTTSSSEEEEEECCGGG--HHHHHHHHHHHHC------------------CCCEEECCTTCCEEEEEEEECHHHHHCH
T ss_pred CCCCCCCcceEEEeCChhh--HHHHHHHHHHHhCcCCCeEEEEECccccccccHHHHHHHHHHhCCEEEEEECcccccCH
Confidence 4466788999999999999 5689999999998 599999988 9999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhhcCCeEEEEEEeecCCcc
Q 009306 87 WCLDELLKILECKKEYAQIVVPVFYRVDPSHV 118 (538)
Q Consensus 87 ~c~~El~~~~~~~~~~~~~v~pv~~~v~~~~v 118 (538)
||+.|+..|+.+......+|||||++++++++
T Consensus 81 wc~~El~~al~~~~~~~~~vIpv~~~v~~~~l 112 (146)
T 3ub2_A 81 WCKYQMLQALTEAPGAEGCTIPLLSGLSRAAY 112 (146)
T ss_dssp HHHHHHHHHHHTSSSSSSEEEEEECSCCGGGS
T ss_pred HHHHHHHHHHHHHhhcCCcEEEEEcCCChhhC
Confidence 99999999999873334478899998876554
No 9
>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A
Probab=99.86 E-value=6.2e-23 Score=180.32 Aligned_cols=101 Identities=17% Similarity=0.295 Sum_probs=91.1
Q ss_pred CCCCCcccEEEcCcccccccchHHHHHHHHhhC--CCeeEeeC-CCCCCCcchHHHHHHHH-hcceEEEEeccCcccchh
Q 009306 12 TNPEIKYDVFLSFGGEDTRESFTSHLYSALSRE--TVETFIDD-DLRRGDEISQSLLDAIE-ASSISIIIFSESYASSRW 87 (538)
Q Consensus 12 ~~~~~~~dvFiSy~~~D~~~~~~~~l~~~l~~~--g~~~~~d~-~~~~g~~~~~~i~~~i~-~s~~~i~v~S~~y~~s~~ 87 (538)
....+.|||||||+++| +.||.+|...|+++ |+++|+|+ |+.||+.|.++|.++|+ +|+++|+|+|++|++|.|
T Consensus 11 ~~~~~~yDvFISys~~D--~~fv~~L~~~Le~~~~g~~~~~~~rd~~~G~~i~~~i~~~I~~~Sr~~IvVlS~~y~~S~w 88 (160)
T 2js7_A 11 GHMPERFDAFICYCPSD--IQFVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDYLQSKE 88 (160)
T ss_dssp SCCTTCEEEEEECCGGG--HHHHHHHHHHHHTSSSCCCCEESCCSSSSSCSCCCCCGGGHHHHEEEEEEECCHHHHHSHH
T ss_pred CCCCcceEEEEEccccc--HHHHHHHHHHHhcCCCceEEEEeCCCCCCCCcHHHHHHHHHHHhCCEEEEEECcchhcCHH
Confidence 34468999999999999 78999999999985 69999998 99999999999999999 799999999999999999
Q ss_pred hHHHHHHHHHHH-hhcCCeEEEEEEeec
Q 009306 88 CLDELLKILECK-KEYAQIVVPVFYRVD 114 (538)
Q Consensus 88 c~~El~~~~~~~-~~~~~~v~pv~~~v~ 114 (538)
|+.|+..|+.+. ...+.+||||+|+.-
T Consensus 89 c~~El~~a~~~~~~~~~~~vIpV~~~~~ 116 (160)
T 2js7_A 89 CDFQTKFALSLSPGAHQKRLIPIKYKAM 116 (160)
T ss_dssp HHHHHHHHHHHCTTHHHHTEEEEESSCC
T ss_pred HHHHHHHHHHHHHccCCCEEEEEEEccc
Confidence 999999999876 444568999999843
No 10
>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A
Probab=99.86 E-value=2.7e-23 Score=180.79 Aligned_cols=97 Identities=22% Similarity=0.373 Sum_probs=89.0
Q ss_pred CCCcccEEEcCcccccccchHHH-HHHHHhhC--CCeeEeeC-CCCCCCcchHHHHHHHHhcceEEEEeccCcccchhhH
Q 009306 14 PEIKYDVFLSFGGEDTRESFTSH-LYSALSRE--TVETFIDD-DLRRGDEISQSLLDAIEASSISIIIFSESYASSRWCL 89 (538)
Q Consensus 14 ~~~~~dvFiSy~~~D~~~~~~~~-l~~~l~~~--g~~~~~d~-~~~~g~~~~~~i~~~i~~s~~~i~v~S~~y~~s~~c~ 89 (538)
..+.|||||||+++| ..||.+ |.+.|+++ |+++|+|+ |+.||+.+.++|.++|++|+++|+|+||+|++|.||+
T Consensus 2 ~~~~yDvFiSy~~~D--~~~v~~~L~~~Le~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~S~wc~ 79 (149)
T 1fyx_A 2 RNIXYDAFVSYSERD--AYWVENLMVQELENFNPPFKLXLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWXK 79 (149)
T ss_dssp CSCCEEEEEECCGGG--HHHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHH
T ss_pred CCccceEEEECCccc--HHHHHHHHHHHHhcCCCCeEEeeccccCCCchhHHHHHHHHHHHcCEEEEEeCcchhccchHH
Confidence 467899999999999 579997 99999986 99999998 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-hhcCCeEEEEEEe
Q 009306 90 DELLKILECK-KEYAQIVVPVFYR 112 (538)
Q Consensus 90 ~El~~~~~~~-~~~~~~v~pv~~~ 112 (538)
.|+..|+.+. +.++.+||||||+
T Consensus 80 ~El~~a~~~~~~~~~~~vIpv~~~ 103 (149)
T 1fyx_A 80 YELDFSHFRLFDENNDAAILILLE 103 (149)
T ss_dssp HHSCCSCCTTCGGGTTCCEEEESS
T ss_pred HHHHHHHHHHHhcCCCEEEEEEec
Confidence 9999988543 5567789999987
No 11
>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A
Probab=99.85 E-value=1.2e-22 Score=181.34 Aligned_cols=99 Identities=18% Similarity=0.410 Sum_probs=86.5
Q ss_pred CCCCCcccEEEcCcccccccchHHH-HHHHHhh--CCCeeEeeC-CCCCCCcchHHHHHHHHhcceEEEEeccCcccchh
Q 009306 12 TNPEIKYDVFLSFGGEDTRESFTSH-LYSALSR--ETVETFIDD-DLRRGDEISQSLLDAIEASSISIIIFSESYASSRW 87 (538)
Q Consensus 12 ~~~~~~~dvFiSy~~~D~~~~~~~~-l~~~l~~--~g~~~~~d~-~~~~g~~~~~~i~~~i~~s~~~i~v~S~~y~~s~~ 87 (538)
....+.|||||||+++| ..||.+ |.+.|++ .|+++|+|+ |+.||+.|.++|.++|++|+++|+|+||+|++|.|
T Consensus 30 ~~~~~~yDvFISys~~D--~~fv~~~L~~~LE~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~IvVlS~~yl~S~w 107 (178)
T 2j67_A 30 LKRNVRFHAFISYSEHD--SLWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEKSYKSIFVLSPNFVQNEW 107 (178)
T ss_dssp CCCSCCEEEEEECCGGG--HHHHHHTHHHHHTTCC-CCCEEEHHHHCCTTSCHHHHHHHHHHTEEEEEEEECHHHHHHTG
T ss_pred cCCCccceEEEECCCCC--HHHHHHHHHHHHhcccCCeEEEEecccCCCCccHHHHHHHHHHhCCEEEEEecccccccch
Confidence 45678999999999999 689985 9999998 899999998 99999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHH-hhcCCeEEEEEEe
Q 009306 88 CLDELLKILECK-KEYAQIVVPVFYR 112 (538)
Q Consensus 88 c~~El~~~~~~~-~~~~~~v~pv~~~ 112 (538)
|+.|+..|+.+. +.++.+||||||+
T Consensus 108 c~~El~~a~~~~~~~~~~~vIpV~~~ 133 (178)
T 2j67_A 108 CHYEFYFAHHNLFHENSDHIILILLE 133 (178)
T ss_dssp GGTHHHHTTCC-------CEEEEESS
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEEec
Confidence 999999998654 4556789999987
No 12
>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}
Probab=99.85 E-value=5.7e-22 Score=173.98 Aligned_cols=97 Identities=23% Similarity=0.323 Sum_probs=87.3
Q ss_pred CcccEEEcCccccc---------ccchHHHHHH-HHh-hCCCeeEeeC-CCCCCCcchHHHHHHHHhcceEEEEeccCcc
Q 009306 16 IKYDVFLSFGGEDT---------RESFTSHLYS-ALS-RETVETFIDD-DLRRGDEISQSLLDAIEASSISIIIFSESYA 83 (538)
Q Consensus 16 ~~~dvFiSy~~~D~---------~~~~~~~l~~-~l~-~~g~~~~~d~-~~~~g~~~~~~i~~~i~~s~~~i~v~S~~y~ 83 (538)
+.|||||||+++|. ++.||.+|.. .|+ +.|+++|+|+ |+.||+.+.++|.++|++|+++|+|+|++|+
T Consensus 1 k~yDaFISy~~~D~~wv~~~~~~~~~fv~~ll~~~LE~~~g~~l~~~~rD~~~G~~i~~~i~~~I~~Sr~~IvVlS~~y~ 80 (159)
T 1t3g_A 1 KDYDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIEDVARCVDQSKRLIIVMTPNYV 80 (159)
T ss_dssp CCBSEEEECCCCC-------CCSHHHHHHTHHHHHHHHTSCCCEECHHHHCCCCTTHHHHHHHHHHTBSEEEEEECHHHH
T ss_pred CCceEEEeCccccchhhhccchhhHHHHHHHHHHHHcCCCCeEEEEEcccccCccchHHHHHHHHHHcCEEEEEEccchh
Confidence 57999999999996 3568888676 699 7999999998 9999999999999999999999999999997
Q ss_pred -cchhhHHHHHHHHHHH-hhcCCeEEEEEEe
Q 009306 84 -SSRWCLDELLKILECK-KEYAQIVVPVFYR 112 (538)
Q Consensus 84 -~s~~c~~El~~~~~~~-~~~~~~v~pv~~~ 112 (538)
.|.||..|+..|+.+. ..++.+||||+++
T Consensus 81 ~~S~wc~~El~~a~~~~~~~~~~~vI~I~~~ 111 (159)
T 1t3g_A 81 VRRGWSIFELETRLRNMLVTGEIKVILIECS 111 (159)
T ss_dssp HTTTTHHHHHSHHHHHHHHTTSSEEEEEECS
T ss_pred hcChHHHHHHHHHHHHHHhcCCCEEEEEEec
Confidence 9999999999999886 5667899999976
No 13
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.84 E-value=9.6e-20 Score=183.05 Aligned_cols=294 Identities=15% Similarity=0.112 Sum_probs=182.6
Q ss_pred ccccCCCCCCCceeccchhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhh---hcC
Q 009306 179 LDDTFHSENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAE---ETC 255 (538)
Q Consensus 179 ~~~~~~~~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~---~~~ 255 (538)
+.+.++..+..|+||+.+++.|.+++..+ +++.|+|++|+|||||+++++++.. .+|+.. .... ...
T Consensus 3 F~~~~~~~~~~~~gR~~el~~L~~~l~~~----~~v~i~G~~G~GKT~Ll~~~~~~~~-----~~~~~~-~~~~~~~~~~ 72 (350)
T 2qen_A 3 FDLRPKTRREDIFDREEESRKLEESLENY----PLTLLLGIRRVGKSSLLRAFLNERP-----GILIDC-RELYAERGHI 72 (350)
T ss_dssp SCCSCCCSGGGSCSCHHHHHHHHHHHHHC----SEEEEECCTTSSHHHHHHHHHHHSS-----EEEEEH-HHHHHTTTCB
T ss_pred CCCCCCCChHhcCChHHHHHHHHHHHhcC----CeEEEECCCcCCHHHHHHHHHHHcC-----cEEEEe-ecccccccCC
Confidence 34455567788999999999999998753 6899999999999999999998752 455552 2221 011
Q ss_pred ChHHHHHHHHHHHhc---------------CCCC---CCchhhcHHHHHHHhcC-CCeEEEEecCCChH---------HH
Q 009306 256 RLGDLRQQLLSTLLN---------------DGNV---KNFLNTDLNFQSRRLTR-KKVLIVFDDVDHPR---------QI 307 (538)
Q Consensus 256 ~~~~l~~~l~~~l~~---------------~~~~---~~~~~~~~~~l~~~l~~-k~~LlVlDdv~~~~---------~~ 307 (538)
....+...+...+.. .... ..........+.+.... ++++|||||++... .+
T Consensus 73 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~ 152 (350)
T 2qen_A 73 TREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELL 152 (350)
T ss_dssp CHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHH
T ss_pred CHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHH
Confidence 334444444443321 0000 12333444445444432 48999999996532 22
Q ss_pred HHHhcCcCCCCCCCEEEEeccchhhhhh----------c--CCCeeEEcCCCCHHHHHHHHHhhhcCCCCCCCchHHHHH
Q 009306 308 KILVGRLDLFASGSRIIITTRDRQVLAN----------C--GVDEVYQMEELVHDDALRLFSRHAFGGDHPHESHTELAC 375 (538)
Q Consensus 308 ~~l~~~l~~~~~~~~iiiTtR~~~~~~~----------~--~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~ 375 (538)
..+...... .++.++|+|++....+.. . .....+.+.+|+.+|+.+++........ .....+.+.
T Consensus 153 ~~L~~~~~~-~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~--~~~~~~~~~ 229 (350)
T 2qen_A 153 ALFAYAYDS-LPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVN--LDVPENEIE 229 (350)
T ss_dssp HHHHHHHHH-CTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTT--CCCCHHHHH
T ss_pred HHHHHHHHh-cCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcC--CCCCHHHHH
Confidence 323222111 247889999887643221 1 1134789999999999999987541111 122356788
Q ss_pred HHHHHhcCCcHHHHHHHHHhcC-CCHHHHHHHHHHhhcCCCCcHHHHHHHhHhCC---CHHhHHHhhccccccCCCCHHH
Q 009306 376 KTIKYARGVPLALEVLGRYLYG-KRREVWENAKSKWETAPPKGIQDALKISYDGL---DDKEQNIFLDIACFFIDEDRDT 451 (538)
Q Consensus 376 ~i~~~~~G~PLal~~~~~~L~~-~~~~~~~~~l~~l~~~~~~~v~~~l~~s~~~L---~~~~k~~l~~la~f~~~~~~~~ 451 (538)
.+++.++|+|++++.++..+.. .+...+ ...+. +.+...+...+..+ ++..+.++..+|+ ...+...
T Consensus 230 ~i~~~tgG~P~~l~~~~~~~~~~~~~~~~---~~~~~----~~~~~~~~~~l~~l~~~~~~~~~~l~~la~--g~~~~~~ 300 (350)
T 2qen_A 230 EAVELLDGIPGWLVVFGVEYLRNGDFGRA---MKRTL----EVAKGLIMGELEELRRRSPRYVDILRAIAL--GYNRWSL 300 (350)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCHHHH---HHHHH----HHHHHHHHHHHHHHHHHCHHHHHHHHHHHT--TCCSHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHhccccHhHH---HHHHH----HHHHHHHHHHHHHHHhCChhHHHHHHHHHh--CCCCHHH
Confidence 9999999999999999876532 222221 11110 11222233333444 7889999999998 3456677
Q ss_pred HHHHHHhC--CC---ChHHHHHHHhhCCceeEecCCcEEe-cHHHHHHHH
Q 009306 452 ATKFLDDC--EF---FATSAIEVLVDKHLITISVLNKIEM-HYLLRAMGR 495 (538)
Q Consensus 452 l~~l~~~~--~~---~~~~~l~~L~~~~Li~~~~~~~~~~-H~lv~~~~~ 495 (538)
+...+... +. ....+++.|.+.+||... ++.|.+ |++++.+.+
T Consensus 301 l~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~-~~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 301 IRDYLAVKGTKIPEPRLYALLENLKKMNWIVEE-DNTYKIADPVVATVLR 349 (350)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEEE-TTEEEESSHHHHHHHT
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhCCCEEec-CCEEEEecHHHHHHHc
Confidence 76665221 22 235689999999999987 566654 889988754
No 14
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.80 E-value=1.2e-18 Score=175.38 Aligned_cols=288 Identities=13% Similarity=0.096 Sum_probs=171.9
Q ss_pred cccCCCCCCCceeccchhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhh-hhcCChH
Q 009306 180 DDTFHSENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREA-EETCRLG 258 (538)
Q Consensus 180 ~~~~~~~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~-~~~~~~~ 258 (538)
.+.++..++.|+||+.+++.|.+ +.. +++.|+|++|+|||+|+++++++.... .+|+...... .......
T Consensus 5 ~~~~~~~~~~~~gR~~el~~L~~-l~~-----~~v~i~G~~G~GKT~L~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 75 (357)
T 2fna_A 5 DTSPKDNRKDFFDREKEIEKLKG-LRA-----PITLVLGLRRTGKSSIIKIGINELNLP---YIYLDLRKFEERNYISYK 75 (357)
T ss_dssp CSSCCCSGGGSCCCHHHHHHHHH-TCS-----SEEEEEESTTSSHHHHHHHHHHHHTCC---EEEEEGGGGTTCSCCCHH
T ss_pred CCCCCCCHHHhcChHHHHHHHHH-hcC-----CcEEEECCCCCCHHHHHHHHHHhcCCC---EEEEEchhhccccCCCHH
Confidence 34445567889999999999999 763 589999999999999999999876532 4565522110 0001222
Q ss_pred HHHHHHHHHHh-------------cC-C-----CC----------CCchhhcHHHHHHHhcCCCeEEEEecCCChH----
Q 009306 259 DLRQQLLSTLL-------------ND-G-----NV----------KNFLNTDLNFQSRRLTRKKVLIVFDDVDHPR---- 305 (538)
Q Consensus 259 ~l~~~l~~~l~-------------~~-~-----~~----------~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~---- 305 (538)
.+...+...+. .. . .. ..........+.+... ++++|||||++...
T Consensus 76 ~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~ 154 (357)
T 2fna_A 76 DFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRG 154 (357)
T ss_dssp HHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTT
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCc
Confidence 33333322221 00 0 00 0122223333322211 48999999995422
Q ss_pred --HHHHHhcCcCCCCCCCEEEEeccchhhhhh----------c-C-CCeeEEcCCCCHHHHHHHHHhhhcC-CCCCCCch
Q 009306 306 --QIKILVGRLDLFASGSRIIITTRDRQVLAN----------C-G-VDEVYQMEELVHDDALRLFSRHAFG-GDHPHESH 370 (538)
Q Consensus 306 --~~~~l~~~l~~~~~~~~iiiTtR~~~~~~~----------~-~-~~~~~~l~~L~~~ea~~Lf~~~~~~-~~~~~~~~ 370 (538)
.+..+...... .++.++|+|++....... . + ....+.+.+|+.+|+.+++...... +.... .
T Consensus 155 ~~~~~~l~~~~~~-~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~-~- 231 (357)
T 2fna_A 155 VNLLPALAYAYDN-LKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFK-D- 231 (357)
T ss_dssp CCCHHHHHHHHHH-CTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCC-C-
T ss_pred hhHHHHHHHHHHc-CCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCC-c-
Confidence 12222111111 246789999987653221 1 1 1357899999999999999875411 11122 1
Q ss_pred HHHHHHHHHHhcCCcHHHHHHHHHhcC-CCHHHHHHHHHHhhcCCCCcHHHHHHHhHh-------CCCHHhHHHhhcccc
Q 009306 371 TELACKTIKYARGVPLALEVLGRYLYG-KRREVWENAKSKWETAPPKGIQDALKISYD-------GLDDKEQNIFLDIAC 442 (538)
Q Consensus 371 ~~~~~~i~~~~~G~PLal~~~~~~L~~-~~~~~~~~~l~~l~~~~~~~v~~~l~~s~~-------~L~~~~k~~l~~la~ 442 (538)
...+++.++|+|++++.++..+.. .+...|... +. +.+...+...+. .|++..+.++..+|+
T Consensus 232 ---~~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~---~~----~~~~~~~~~~l~~~~~~~~~l~~~~~~~l~~la~ 301 (357)
T 2fna_A 232 ---YEVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQ---TL----EYAKKLILKEFENFLHGREIARKRYLNIMRTLSK 301 (357)
T ss_dssp ---HHHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHH---HH----HHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTT
T ss_pred ---HHHHHHHhCCCHHHHHHHHHHHccccchHHHHHH---HH----HHHHHHHHHHHHHHhhccccccHHHHHHHHHHHc
Confidence 178999999999999999887632 233333211 10 011122222222 678899999999998
Q ss_pred ccCCCCHHHHHHHHH-hCC-----CChHHHHHHHhhCCceeEecCCcEE-ecHHHHHHH
Q 009306 443 FFIDEDRDTATKFLD-DCE-----FFATSAIEVLVDKHLITISVLNKIE-MHYLLRAMG 494 (538)
Q Consensus 443 f~~~~~~~~l~~l~~-~~~-----~~~~~~l~~L~~~~Li~~~~~~~~~-~H~lv~~~~ 494 (538)
. . +...+...+. ..+ .....+++.|.+.+||... ++.|. .|++++++.
T Consensus 302 -g-~-~~~~l~~~~~~~~g~~~~~~~~~~~L~~L~~~gli~~~-~~~y~f~~~~~~~~l 356 (357)
T 2fna_A 302 -C-G-KWSDVKRALELEEGIEISDSEIYNYLTQLTKHSWIIKE-GEKYCPSEPLISLAF 356 (357)
T ss_dssp -C-B-CHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHTTSEEES-SSCEEESSHHHHHHT
T ss_pred -C-C-CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEec-CCEEEecCHHHHHhh
Confidence 3 3 6777665432 112 2345689999999999987 46666 589999874
No 15
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.75 E-value=3.4e-17 Score=168.33 Aligned_cols=285 Identities=12% Similarity=0.028 Sum_probs=172.5
Q ss_pred CCCCCceeccchhHHHHHhh-hc--CC--CCceEEEE--eccCCCchhHHHHHHHHhhccce-----e-eEEEEeehhhh
Q 009306 185 SENEDLVGVRLPMKEIESLL-RT--GS--TNVYKLGI--WGIGGIGKTTIAGAIFNKISRHF-----S-GSYFARNVREA 251 (538)
Q Consensus 185 ~~~~~~vGR~~~l~~l~~~L-~~--~~--~~~~~v~I--~G~~GiGKTtLa~~~~~~~~~~f-----~-~~~~~~~~~~~ 251 (538)
..+..|+||+.+++.|.+.+ .. .+ ...+.+.| +|++|+|||||++.+++.....+ . ..+|+.+
T Consensus 19 ~~p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~---- 94 (412)
T 1w5s_A 19 YIPPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNA---- 94 (412)
T ss_dssp CCCSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEG----
T ss_pred cCCCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEEC----
Confidence 34578999999999999988 53 12 23456777 99999999999999998765531 2 2455542
Q ss_pred hhcCChHHHHHHHHHHHhcCCCC-CCchhhcHHHHHHHhc--CCCeEEEEecCCCh--------HHHHHHhcCcCCC---
Q 009306 252 EETCRLGDLRQQLLSTLLNDGNV-KNFLNTDLNFQSRRLT--RKKVLIVFDDVDHP--------RQIKILVGRLDLF--- 317 (538)
Q Consensus 252 ~~~~~~~~l~~~l~~~l~~~~~~-~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~--------~~~~~l~~~l~~~--- 317 (538)
........++..++..++..... ..........+.+.+. +++++|||||++.. +.+..+...+...
T Consensus 95 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~ 174 (412)
T 1w5s_A 95 FNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSR 174 (412)
T ss_dssp GGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCT
T ss_pred CCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccC
Confidence 23345667788888877543221 1233444555555553 67999999999653 3333333222111
Q ss_pred C--CCCEEEEeccchhhhhhc---------CCCeeEEcCCCCHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhc----
Q 009306 318 A--SGSRIIITTRDRQVLANC---------GVDEVYQMEELVHDDALRLFSRHAFGGDHPHESHTELACKTIKYAR---- 382 (538)
Q Consensus 318 ~--~~~~iiiTtR~~~~~~~~---------~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~---- 382 (538)
+ .+..+|+||+...+...+ .....+.+++|+.+++.++|..++...........+....+++.++
T Consensus 175 ~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 254 (412)
T 1w5s_A 175 DGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKG 254 (412)
T ss_dssp TSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGT
T ss_pred CCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhcc
Confidence 2 344577788755432111 1123499999999999999976542111112234677889999999
Q ss_pred --CCcHHHHHHHHHhc------CC---CHHHHHHHHHHhhcCCCCcHHHHHHHhHhCCCHHhHHHhhcccccc----CCC
Q 009306 383 --GVPLALEVLGRYLY------GK---RREVWENAKSKWETAPPKGIQDALKISYDGLDDKEQNIFLDIACFF----IDE 447 (538)
Q Consensus 383 --G~PLal~~~~~~L~------~~---~~~~~~~~l~~l~~~~~~~v~~~l~~s~~~L~~~~k~~l~~la~f~----~~~ 447 (538)
|+|..+..+..... +. +...+...+..... ...+...+..|++.++.+|..++++. ..+
T Consensus 255 ~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~------~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~~~ 328 (412)
T 1w5s_A 255 GDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA------ASIQTHELEALSIHELIILRLIAEATLGGMEWI 328 (412)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC------------CCSSSSSCHHHHHHHHHHHHHHHTTCSSB
T ss_pred CCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc------cchHHHHHHcCCHHHHHHHHHHHHHHhcCCCCc
Confidence 99976665554321 11 22333333322110 23345567889999999999998754 234
Q ss_pred CHHHHHH----HH-HhCCC------ChHHHHHHHhhCCceeEe
Q 009306 448 DRDTATK----FL-DDCEF------FATSAIEVLVDKHLITIS 479 (538)
Q Consensus 448 ~~~~l~~----l~-~~~~~------~~~~~l~~L~~~~Li~~~ 479 (538)
+...+.. +. ...+. ....+++.|.+.|||...
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~ 371 (412)
T 1w5s_A 329 NAGLLRQRYEDASLTMYNVKPRGYTQYHIYLKHLTSLGLVDAK 371 (412)
T ss_dssp CHHHHHHHHHHHHHHHSCCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred cHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCEEee
Confidence 4443322 22 22221 134679999999999864
No 16
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.70 E-value=6.6e-16 Score=157.03 Aligned_cols=321 Identities=14% Similarity=0.078 Sum_probs=186.9
Q ss_pred CCCCCceeccchhHHHHHhhhcC--CCCceEEEEeccCCCchhHHHHHHHHhhccce---eeEEEEeehhhhhhcCChHH
Q 009306 185 SENEDLVGVRLPMKEIESLLRTG--STNVYKLGIWGIGGIGKTTIAGAIFNKISRHF---SGSYFARNVREAEETCRLGD 259 (538)
Q Consensus 185 ~~~~~~vGR~~~l~~l~~~L~~~--~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f---~~~~~~~~~~~~~~~~~~~~ 259 (538)
..+..|+||+.+++.|.+++... ....+.+.|+|++|+|||||++.++......+ ...+|+.+ ........
T Consensus 17 ~~p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~----~~~~~~~~ 92 (386)
T 2qby_A 17 YIPDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINT----RQIDTPYR 92 (386)
T ss_dssp CCCSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEH----HHHCSHHH
T ss_pred cCCCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEC----CCCCCHHH
Confidence 44588999999999999988742 33456799999999999999999999876543 23455542 22334455
Q ss_pred HHHHHHHHHhcCCCCC-CchhhcHHHHHHHhc--CCCeEEEEecCCCh------HHHHHHhcCcCC-CCCCCEEEEeccc
Q 009306 260 LRQQLLSTLLNDGNVK-NFLNTDLNFQSRRLT--RKKVLIVFDDVDHP------RQIKILVGRLDL-FASGSRIIITTRD 329 (538)
Q Consensus 260 l~~~l~~~l~~~~~~~-~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~------~~~~~l~~~l~~-~~~~~~iiiTtR~ 329 (538)
+...++..++...... .........+.+.+. +++.+||||+++.. ..+..+...+.. ...+..+|+||+.
T Consensus 93 ~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~ 172 (386)
T 2qby_A 93 VLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITND 172 (386)
T ss_dssp HHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESC
T ss_pred HHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECC
Confidence 5666655553321111 223444455555553 34899999999543 234444332211 1345667777776
Q ss_pred hhhhhhcC-------CCeeEEcCCCCHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhc---CCcHHHHHHHHHh-c--
Q 009306 330 RQVLANCG-------VDEVYQMEELVHDDALRLFSRHAFGGDHPHESHTELACKTIKYAR---GVPLALEVLGRYL-Y-- 396 (538)
Q Consensus 330 ~~~~~~~~-------~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~---G~PLal~~~~~~L-~-- 396 (538)
......+. ....+.+++++.++..+++...+...........+....+++.++ |+|..+..+.... .
T Consensus 173 ~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a 252 (386)
T 2qby_A 173 VKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIA 252 (386)
T ss_dssp GGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred CChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 54322211 125899999999999999988652111122344677788888888 9998444333322 1
Q ss_pred ---C---CCHHHHHHHHHHhhcCCCCcHHHHHHHhHhCCCHHhHHHhhccccccC-C---CCHHHH----HHHHHh---C
Q 009306 397 ---G---KRREVWENAKSKWETAPPKGIQDALKISYDGLDDKEQNIFLDIACFFI-D---EDRDTA----TKFLDD---C 459 (538)
Q Consensus 397 ---~---~~~~~~~~~l~~l~~~~~~~v~~~l~~s~~~L~~~~k~~l~~la~f~~-~---~~~~~l----~~l~~~---~ 459 (538)
+ -+.+.+..++.... ...+...+..+++.++.+|..++.+.. + ++...+ ..+... .
T Consensus 253 ~~~~~~~i~~~~v~~a~~~~~-------~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~g~~ 325 (386)
T 2qby_A 253 ERMKDTKVKEEYVYMAKEEIE-------RDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKLGVE 325 (386)
T ss_dssp HHTTCSSCCHHHHHHHHHHHH-------HHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHHTCC
T ss_pred HhcCCCccCHHHHHHHHHHHh-------hchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhcCCC
Confidence 1 13444444444331 245677788999999999988885422 1 233222 222221 2
Q ss_pred C---CChHHHHHHHhhCCceeEecCCcEEecHHHHHHHHHHHhhcCCCCCCCcccccCcchHHHHHcc-CCCcchhhh
Q 009306 460 E---FFATSAIEVLVDKHLITISVLNKIEMHYLLRAMGREIVRQESTNDPGKRSRLWHHKEVYKILSE-NRVSNNDFS 533 (538)
Q Consensus 460 ~---~~~~~~l~~L~~~~Li~~~~~~~~~~H~lv~~~~~~~~~~~~~~~~~~r~rl~~~~~i~~~l~~-~~~~~~~~~ 533 (538)
. .....+++.|.+.|+|..... ...........+-.|++.+|.++|.+ ....++++|
T Consensus 326 ~~~~~~~~~~l~~L~~~gli~~~~~-----------------~~~~~g~y~~~~l~~~~~~v~~~l~~~~~~~~~~~~ 386 (386)
T 2qby_A 326 AVTQRRVSDIINELDMVGILTAKVV-----------------NRGRYGKTKEIGLAVDKNIIVRSLIESDSRFADLWS 386 (386)
T ss_dssp CCCHHHHHHHHHHHHHHTSEEEEEC-----------------CCTTSCCCEEEEESSCSHHHHHHHHHHC--------
T ss_pred CCCHHHHHHHHHHHHhCCCEEEEee-----------------cCCCCCCeEEEEeCCCHHHHHHHHhcCChhhhhhcC
Confidence 2 123567999999999986521 00000011234566888999999988 777776654
No 17
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.67 E-value=9.2e-15 Score=148.66 Aligned_cols=278 Identities=15% Similarity=0.082 Sum_probs=175.7
Q ss_pred CCCceeccchhHHHHHhhhc--CCCCceEEEEeccCCCchhHHHHHHHHhhccc--------eeeEEEEeehhhhhhcC-
Q 009306 187 NEDLVGVRLPMKEIESLLRT--GSTNVYKLGIWGIGGIGKTTIAGAIFNKISRH--------FSGSYFARNVREAEETC- 255 (538)
Q Consensus 187 ~~~~vGR~~~l~~l~~~L~~--~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~--------f~~~~~~~~~~~~~~~~- 255 (538)
+..|+||+.+++.+..++.. .....+.+.|+|++|+|||+||+.+++.+... ....+++. .....
T Consensus 19 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~----~~~~~~ 94 (384)
T 2qby_B 19 FKEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVN----CREVGG 94 (384)
T ss_dssp CSSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEE----HHHHCS
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEE----CccCCC
Confidence 47899999999999988764 23345689999999999999999999876443 22344554 22233
Q ss_pred ChHHHHHHHHHHHhcCCCCC--CchhhcHHHHHHHhcCCCeEEEEecCCChHH-------HHHHhcCcCCCCCCCEEEEe
Q 009306 256 RLGDLRQQLLSTLLNDGNVK--NFLNTDLNFQSRRLTRKKVLIVFDDVDHPRQ-------IKILVGRLDLFASGSRIIIT 326 (538)
Q Consensus 256 ~~~~l~~~l~~~l~~~~~~~--~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~-------~~~l~~~l~~~~~~~~iiiT 326 (538)
....++..++..+.+..... .........+.+.+..++.+|||||++.... +..+.... .+..+|+|
T Consensus 95 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~----~~~~iI~~ 170 (384)
T 2qby_B 95 TPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD----ANISVIMI 170 (384)
T ss_dssp CHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS----SCEEEEEE
T ss_pred CHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC----cceEEEEE
Confidence 56667777777774432221 3334556667777776666999999975432 33333222 67788888
Q ss_pred ccchhhh----hhc--CCCeeEEcCCCCHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhc---CCcH-HHHHHHHHh-
Q 009306 327 TRDRQVL----ANC--GVDEVYQMEELVHDDALRLFSRHAFGGDHPHESHTELACKTIKYAR---GVPL-ALEVLGRYL- 395 (538)
Q Consensus 327 tR~~~~~----~~~--~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~---G~PL-al~~~~~~L- 395 (538)
|+..... ..+ .....+.+++++.++..+++..++...........+....+++.++ |+|. ++..+-...
T Consensus 171 t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~ 250 (384)
T 2qby_B 171 SNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQ 250 (384)
T ss_dssp CSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred ECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 8865321 111 1123899999999999999998752111112233566778888888 9987 443333322
Q ss_pred -c----CCCHHHHHHHHHHhhcCCCCcHHHHHHHhHhCCCHHhHHHhhccccccC-CCCHHHHHHHHHhCC---CC---h
Q 009306 396 -Y----GKRREVWENAKSKWETAPPKGIQDALKISYDGLDDKEQNIFLDIACFFI-DEDRDTATKFLDDCE---FF---A 463 (538)
Q Consensus 396 -~----~~~~~~~~~~l~~l~~~~~~~v~~~l~~s~~~L~~~~k~~l~~la~f~~-~~~~~~l~~l~~~~~---~~---~ 463 (538)
. .-+.+.+...+.... ...+..+++.|++.++.++..++.... +-.......+...-+ .. .
T Consensus 251 ~a~~~~~i~~~~v~~~~~~~~-------~~~~~~~~~~l~~~~~~~l~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 323 (384)
T 2qby_B 251 LASGGGIIRKEHVDKAIVDYE-------QERLIEAVKALPFHYKLALRSLIESEDVMSAHKMYTDLCNKFKQKPLSYRRF 323 (384)
T ss_dssp HTTSSSCCCHHHHHHHHHHHH-------HHHHHHHHHSSCHHHHHHHHHHHTCCBHHHHHHHHHHHHHHTTCCCCCHHHH
T ss_pred HhcCCCccCHHHHHHHHHHHh-------cchHHHHHHcCCHHHHHHHHHHHHhcccChHHHHHHHHHHHcCCCCCCHHHH
Confidence 1 124556666655442 245677789999999999888876111 100122333333222 21 3
Q ss_pred HHHHHHHhhCCceeEe
Q 009306 464 TSAIEVLVDKHLITIS 479 (538)
Q Consensus 464 ~~~l~~L~~~~Li~~~ 479 (538)
...++.|.++|||...
T Consensus 324 ~~~l~~L~~~gli~~~ 339 (384)
T 2qby_B 324 SDIISELDMFGIVKIR 339 (384)
T ss_dssp HHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHhCCCEEEE
Confidence 4578899999999964
No 18
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.66 E-value=6.8e-15 Score=149.86 Aligned_cols=305 Identities=13% Similarity=0.048 Sum_probs=186.6
Q ss_pred CCCCceeccchhHHHHHhhhc----CCCCceEEEEeccCCCchhHHHHHHHHhhccce-eeEEEEeehhhhhhcCChHHH
Q 009306 186 ENEDLVGVRLPMKEIESLLRT----GSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHF-SGSYFARNVREAEETCRLGDL 260 (538)
Q Consensus 186 ~~~~~vGR~~~l~~l~~~L~~----~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f-~~~~~~~~~~~~~~~~~~~~l 260 (538)
.++.++||+.+++.|..++.. ..+..+.+.|+|++|+|||||++.++....... ...+++. .........+
T Consensus 15 ~p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~----~~~~~~~~~~ 90 (389)
T 1fnn_A 15 VPKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYIN----GFIYRNFTAI 90 (389)
T ss_dssp CCSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEE----TTTCCSHHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEe----CccCCCHHHH
Confidence 447899999999999998865 222234799999999999999999998876542 2344554 2233445667
Q ss_pred HHHHHHHHhcCCCCC-CchhhcHHHHHHHhc--CCCeEEEEecCCC--hHHHHHHhcCcCCCC----CCCEEEEeccchh
Q 009306 261 RQQLLSTLLNDGNVK-NFLNTDLNFQSRRLT--RKKVLIVFDDVDH--PRQIKILVGRLDLFA----SGSRIIITTRDRQ 331 (538)
Q Consensus 261 ~~~l~~~l~~~~~~~-~~~~~~~~~l~~~l~--~k~~LlVlDdv~~--~~~~~~l~~~l~~~~----~~~~iiiTtR~~~ 331 (538)
...++..++...... .........+.+.+. +++.+||||+++. ...+..+...+.... .+..+|++|+...
T Consensus 91 ~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~ 170 (389)
T 1fnn_A 91 IGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDA 170 (389)
T ss_dssp HHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTH
T ss_pred HHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCch
Confidence 777777665432211 233444444444443 5688999999965 344555544443222 3667888877653
Q ss_pred hhhhcC-------CCeeEEcCCCCHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHh---------cCCcHHHHHHHHHh
Q 009306 332 VLANCG-------VDEVYQMEELVHDDALRLFSRHAFGGDHPHESHTELACKTIKYA---------RGVPLALEVLGRYL 395 (538)
Q Consensus 332 ~~~~~~-------~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~---------~G~PLal~~~~~~L 395 (538)
....+. ....+.+++++.++..+++...+...........+....+++.+ +|+|..+..+....
T Consensus 171 ~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a 250 (389)
T 1fnn_A 171 VLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRS 250 (389)
T ss_dssp HHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHH
T ss_pred HHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHH
Confidence 322221 12368999999999999998876221112234567888999999 79986555444332
Q ss_pred c------CC---CHHHHHHHHHHhhcCCCCcHHHHHHHhHhCCCHHhHHHhhcccccc---C--CCCHHHHHHHHHh---
Q 009306 396 Y------GK---RREVWENAKSKWETAPPKGIQDALKISYDGLDDKEQNIFLDIACFF---I--DEDRDTATKFLDD--- 458 (538)
Q Consensus 396 ~------~~---~~~~~~~~l~~l~~~~~~~v~~~l~~s~~~L~~~~k~~l~~la~f~---~--~~~~~~l~~l~~~--- 458 (538)
. +. +.+.......... ... +...+..|+..++.+|..++.+. . .++...+......
T Consensus 251 ~~~a~~~~~~~i~~~~v~~~~~~~~---~~~----~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~~ 323 (389)
T 1fnn_A 251 AYAAQQNGRKHIAPEDVRKSSKEVL---FGI----SEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIVCE 323 (389)
T ss_dssp HHHHHHTTCSSCCHHHHHHHHHHHS---CCC----CHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCcCHHHHHHHHHHHh---hhh----HHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHH
Confidence 1 11 2233333333221 222 23346778899999988888654 2 3444444433222
Q ss_pred ----CC---CChHHHHHHHhhCCceeEecC-------CcE-------EecHHHHHHHHHHHhhc
Q 009306 459 ----CE---FFATSAIEVLVDKHLITISVL-------NKI-------EMHYLLRAMGREIVRQE 501 (538)
Q Consensus 459 ----~~---~~~~~~l~~L~~~~Li~~~~~-------~~~-------~~H~lv~~~~~~~~~~~ 501 (538)
.. ......++.|.++|||..... |++ ..|+++..+..+++.++
T Consensus 324 ~~~~~~~~~~~~~~~l~~L~~~gli~~~~~~~~~g~~g~~~~~~l~~~~~~v~~~~~~~~~~~~ 387 (389)
T 1fnn_A 324 EYGERPRVHSQLWSYLNDLREKGIVETRQNKRGEGVRGRTTLISIGTEPLDTLEAVITKLIKEE 387 (389)
T ss_dssp HTTCCCCCHHHHHHHHHHHHHTTSSEEEEC---------CEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred HcCCCCCCHHHHHHHHHHHHhCCCeEEeeeccCCCCCCceeEEEeCCCHHHHHHHHHHHHHHHh
Confidence 11 123457999999999997433 322 24677777777777654
No 19
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.64 E-value=1.9e-14 Score=146.40 Aligned_cols=314 Identities=13% Similarity=0.075 Sum_probs=189.5
Q ss_pred CCCCceeccchhHHHHHhhhcC--CCCceEEEEeccCCCchhHHHHHHHHhhccc------eeeEEEEeehhhhhhcCCh
Q 009306 186 ENEDLVGVRLPMKEIESLLRTG--STNVYKLGIWGIGGIGKTTIAGAIFNKISRH------FSGSYFARNVREAEETCRL 257 (538)
Q Consensus 186 ~~~~~vGR~~~l~~l~~~L~~~--~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~------f~~~~~~~~~~~~~~~~~~ 257 (538)
.++.|+||+.+++.+..++... ....+.+.|+|++|+||||||+.+++..... -...+++. .......
T Consensus 17 ~p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~----~~~~~~~ 92 (387)
T 2v1u_A 17 VPDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVN----ARHRETP 92 (387)
T ss_dssp CCSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEE----TTTSCSH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEE----CCcCCCH
Confidence 4478999999999999988542 3345679999999999999999999876443 12334444 2233455
Q ss_pred HHHHHHHHHHHhcCCCCC-CchhhcHHHHHHHh--cCCCeEEEEecCCChH----HHHHH---hcCcCCC--CCCCEEEE
Q 009306 258 GDLRQQLLSTLLNDGNVK-NFLNTDLNFQSRRL--TRKKVLIVFDDVDHPR----QIKIL---VGRLDLF--ASGSRIII 325 (538)
Q Consensus 258 ~~l~~~l~~~l~~~~~~~-~~~~~~~~~l~~~l--~~k~~LlVlDdv~~~~----~~~~l---~~~l~~~--~~~~~iii 325 (538)
..+...++..++...... .........+.+.+ .+++.+|||||++... ..+.+ ....... ..+..+|+
T Consensus 93 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~ 172 (387)
T 2v1u_A 93 YRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVG 172 (387)
T ss_dssp HHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEE
T ss_pred HHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEE
Confidence 667777777775432222 23444455555555 3458899999997643 22222 2222111 34567777
Q ss_pred eccchhh--------hhhcCCCeeEEcCCCCHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhc---CCcHHH-HHHHH
Q 009306 326 TTRDRQV--------LANCGVDEVYQMEELVHDDALRLFSRHAFGGDHPHESHTELACKTIKYAR---GVPLAL-EVLGR 393 (538)
Q Consensus 326 TtR~~~~--------~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~---G~PLal-~~~~~ 393 (538)
||+.... ...+ ....+.+++++.++..+++...+...........+....+++.++ |+|..+ ..+..
T Consensus 173 ~t~~~~~~~~l~~~l~~r~-~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~ 251 (387)
T 2v1u_A 173 ITNSLGFVENLEPRVKSSL-GEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLLRV 251 (387)
T ss_dssp ECSCSTTSSSSCHHHHTTT-TSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred EECCCchHhhhCHHHHhcC-CCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 7766522 1111 125789999999999999988752111112233456778888888 999433 33322
Q ss_pred Hh---c--C---CCHHHHHHHHHHhhcCCCCcHHHHHHHhHhCCCHHhHHHhhccccccCC---CCHHHHH----HHHHh
Q 009306 394 YL---Y--G---KRREVWENAKSKWETAPPKGIQDALKISYDGLDDKEQNIFLDIACFFID---EDRDTAT----KFLDD 458 (538)
Q Consensus 394 ~L---~--~---~~~~~~~~~l~~l~~~~~~~v~~~l~~s~~~L~~~~k~~l~~la~f~~~---~~~~~l~----~l~~~ 458 (538)
.. . + -+.+.+...+.... ...+..++..|++.++.++..++....+ +....+. .+...
T Consensus 252 a~~~a~~~~~~~i~~~~v~~a~~~~~-------~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (387)
T 2v1u_A 252 AGEIAERRREERVRREHVYSARAEIE-------RDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKELTST 324 (387)
T ss_dssp HHHHHHHTTCSCBCHHHHHHHHHHHH-------HHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCcCHHHHHHHHHHHh-------hchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHh
Confidence 22 1 1 13455555554431 2356677899999999998888754322 2333222 22222
Q ss_pred C---CC---ChHHHHHHHhhCCceeEec--CCcEEecHHHHHHHHHHHhhcCCCCCCCcccccCcchHHHHHccCCCcch
Q 009306 459 C---EF---FATSAIEVLVDKHLITISV--LNKIEMHYLLRAMGREIVRQESTNDPGKRSRLWHHKEVYKILSENRVSNN 530 (538)
Q Consensus 459 ~---~~---~~~~~l~~L~~~~Li~~~~--~~~~~~H~lv~~~~~~~~~~~~~~~~~~r~rl~~~~~i~~~l~~~~~~~~ 530 (538)
. .. .....++.|...|++.... .|+. ....+.+.+|++.+|.++|.++....+
T Consensus 325 ~~~~~~~~~~~~~~l~~L~~~gli~~~~~~~g~~-------------------g~~~~~~l~~~~~~i~~~l~~~~~~~~ 385 (387)
T 2v1u_A 325 LGLEHVTLRRVSGIISELDMLGIVKSRVVSRGRY-------------------GKTREVSLDADRLAVENALSEDPFVAR 385 (387)
T ss_dssp TTCCCCCHHHHHHHHHHHHHTTSEEEEEEECGGG-------------------CEEEEEEECSCHHHHHHHHHHSTTGGG
T ss_pred cCCCCCCHHHHHHHHHHHHhCCCeEEEeecCCCC-------------------CceeEEEecCCHHHHHHHHhccHhhhh
Confidence 1 11 2345788999999999642 1210 011245577888888888887766544
No 20
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.57 E-value=1.2e-15 Score=170.98 Aligned_cols=101 Identities=19% Similarity=0.329 Sum_probs=90.7
Q ss_pred CCCCcccEEEcCcccccccchH-HHHHHHHhh-----CCCeeEeeC-CCCCCCcchHHHHHHHHhcceEEEEeccCcccc
Q 009306 13 NPEIKYDVFLSFGGEDTRESFT-SHLYSALSR-----ETVETFIDD-DLRRGDEISQSLLDAIEASSISIIIFSESYASS 85 (538)
Q Consensus 13 ~~~~~~dvFiSy~~~D~~~~~~-~~l~~~l~~-----~g~~~~~d~-~~~~g~~~~~~i~~~i~~s~~~i~v~S~~y~~s 85 (538)
...+.|||||||+++| +.|| .+|.+.|+. .|+++|+++ |+.||+.+.++|.++|++|+++|+|+|++|+.|
T Consensus 666 ~~~~~yd~fisy~~~d--~~~v~~~l~~~Le~~~~~~~~~~~~~~~rd~~~G~~~~~~i~~~i~~sr~~i~vls~~~~~s 743 (844)
T 3j0a_A 666 PDMYKYDAYLCFSSKD--FTWVQNALLKHLDTQYSDQNRFNLCFEERDFVPGENRIANIQDAIWNSRKIVCLVSRHFLRD 743 (844)
T ss_dssp SSCCCCSEEEECCSTT--HHHHHHTHHHHHHSTTTTTTCSCEECSSSSCCSSSCHHHHHHHHHHHSSEEEEEECTTHHHH
T ss_pred ccceeccEEEEeeCCc--HHHHHHHHHHHHhhccccCCceEEEEEccccCCCchHHHHHHHHHHHhCeEEEEeccccccC
Confidence 4578999999999999 5677 779999985 689999999 999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHH-hhcCCeEEEEEEeecC
Q 009306 86 RWCLDELLKILECK-KEYAQIVVPVFYRVDP 115 (538)
Q Consensus 86 ~~c~~El~~~~~~~-~~~~~~v~pv~~~v~~ 115 (538)
.||..|+..|+.+. ++.+.+||||||+.-|
T Consensus 744 ~wc~~e~~~a~~~~~~~~~~~~i~i~~~~~~ 774 (844)
T 3j0a_A 744 GWCLEAFSYAQGRCLSDLNSALIMVVVGSLS 774 (844)
T ss_dssp TSTTHHHHHHHSCCCCSSCTTEEEEESSCCC
T ss_pred hHHHHHHHHHHHHHHHhcCCcEEEEEeccCC
Confidence 99999999988766 5667789999988433
No 21
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.40 E-value=4.4e-12 Score=119.74 Aligned_cols=199 Identities=13% Similarity=0.051 Sum_probs=119.3
Q ss_pred CCCCCceeccchhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhhcCChHHHHHHH
Q 009306 185 SENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEETCRLGDLRQQL 264 (538)
Q Consensus 185 ~~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l 264 (538)
.....++||+..++.|..++..+. ..+.+.|+|++|+||||||+.+++.....+....... ..... ...+
T Consensus 20 ~~~~~~~g~~~~~~~l~~~l~~~~-~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~--------~~~~~-~~~~ 89 (250)
T 1njg_A 20 QTFADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPC--------GVCDN-CREI 89 (250)
T ss_dssp CSGGGCCSCHHHHHHHHHHHHHTC-CCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCC--------SCSHH-HHHH
T ss_pred ccHHHHhCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCC--------cccHH-HHHH
Confidence 344679999999999999987543 2347899999999999999999987654321100000 00000 0000
Q ss_pred HHHH----hcCCCCCCchhhcHHHHHHH-----hcCCCeEEEEecCCC--hHHHHHHhcCcCCCCCCCEEEEeccchhhh
Q 009306 265 LSTL----LNDGNVKNFLNTDLNFQSRR-----LTRKKVLIVFDDVDH--PRQIKILVGRLDLFASGSRIIITTRDRQVL 333 (538)
Q Consensus 265 ~~~l----~~~~~~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~--~~~~~~l~~~l~~~~~~~~iiiTtR~~~~~ 333 (538)
.... ................+.+. ..+++.+|||||++. ...+..+...+.....+..+|+||+.....
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~ 169 (250)
T 1njg_A 90 EQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 169 (250)
T ss_dssp HTTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGS
T ss_pred hccCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhC
Confidence 0000 00000000000001111111 124678999999964 455666655554445677888888665321
Q ss_pred -hh-cCCCeeEEcCCCCHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhcCCcHHHHHHHHHh
Q 009306 334 -AN-CGVDEVYQMEELVHDDALRLFSRHAFGGDHPHESHTELACKTIKYARGVPLALEVLGRYL 395 (538)
Q Consensus 334 -~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~L 395 (538)
.. ......+++++++.++..+++...+.... .....+....+++.++|+|..+..+...+
T Consensus 170 ~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~--~~~~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 170 PVTILSRCLQFHLKALDVEQIRHQLEHILNEEH--IAHEPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp CHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTT--CCBCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 11 12246899999999999999988763321 23346778899999999999888776544
No 22
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.36 E-value=3.2e-12 Score=119.03 Aligned_cols=187 Identities=11% Similarity=0.079 Sum_probs=115.7
Q ss_pred CCCCCCceeccchhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhccc-eee-EEEEeehhhhhhcCChHHHH
Q 009306 184 HSENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRH-FSG-SYFARNVREAEETCRLGDLR 261 (538)
Q Consensus 184 ~~~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~-~~~~~~~~~~~~~~~~~~l~ 261 (538)
|.....++||+..++.+..++..+. .+.+.|+|++|+|||+||+.+++.+... +.. .+.+. . ........+.
T Consensus 13 p~~~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~ 86 (226)
T 2chg_A 13 PRTLDEVVGQDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMN-A---SDERGIDVVR 86 (226)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHTTC--CCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEE-T---TCTTCHHHHH
T ss_pred CCCHHHHcCcHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEec-c---ccccChHHHH
Confidence 3445679999999999999997542 2238999999999999999999876433 222 22222 1 1111222211
Q ss_pred HHHHHHHhcCCCCCCchhhcHHHHHHHhcCCCeEEEEecCCCh--HHHHHHhcCcCCCCCCCEEEEeccchhhh-hh-cC
Q 009306 262 QQLLSTLLNDGNVKNFLNTDLNFQSRRLTRKKVLIVFDDVDHP--RQIKILVGRLDLFASGSRIIITTRDRQVL-AN-CG 337 (538)
Q Consensus 262 ~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~iiiTtR~~~~~-~~-~~ 337 (538)
..+........ ....++.+|||||++.. ...+.+...+.....+..+|+||+..... .. ..
T Consensus 87 -~~~~~~~~~~~--------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~ 151 (226)
T 2chg_A 87 -HKIKEFARTAP--------------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQS 151 (226)
T ss_dssp -HHHHHHHTSCC--------------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHT
T ss_pred -HHHHHHhcccC--------------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHH
Confidence 11111111100 01256789999999653 34444544443335677888888765321 11 12
Q ss_pred CCeeEEcCCCCHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhcCCcHHHHHHHH
Q 009306 338 VDEVYQMEELVHDDALRLFSRHAFGGDHPHESHTELACKTIKYARGVPLALEVLGR 393 (538)
Q Consensus 338 ~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~ 393 (538)
....+++++++.++..+++...+.... .....+....+++.++|+|..+..+..
T Consensus 152 r~~~i~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~l~~~~~g~~r~l~~~l~ 205 (226)
T 2chg_A 152 RCAVFRFKPVPKEAMKKRLLEICEKEG--VKITEDGLEALIYISGGDFRKAINALQ 205 (226)
T ss_dssp TSEEEECCCCCHHHHHHHHHHHHHHHT--CCBCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hCceeecCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 234889999999999999988763211 124466788899999999986554444
No 23
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.22 E-value=4.8e-11 Score=117.95 Aligned_cols=188 Identities=15% Similarity=0.225 Sum_probs=114.8
Q ss_pred CCCCCCceeccchhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhccc-ee-eEEEEeehhhhhhcCChHHHH
Q 009306 184 HSENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRH-FS-GSYFARNVREAEETCRLGDLR 261 (538)
Q Consensus 184 ~~~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~-~~~~~~~~~~~~~~~~~~~l~ 261 (538)
|.....++|++..++.|..++..+. .+.+.|+|++|+|||++|+.+++.+... +. ..+.+. ........ ..
T Consensus 17 p~~~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~----~~~~~~~~-~i 89 (323)
T 1sxj_B 17 PQVLSDIVGNKETIDRLQQIAKDGN--MPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELN----ASDDRGID-VV 89 (323)
T ss_dssp CSSGGGCCSCTHHHHHHHHHHHSCC--CCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEEC----TTSCCSHH-HH
T ss_pred CCCHHHHHCCHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEec----CccccChH-HH
Confidence 3344679999999999999987643 2238999999999999999999886432 22 122222 11111211 11
Q ss_pred HHHHHHHhcCCCCCCchhhcHHHHHHHh-cCCCeEEEEecCCCh--HHHHHHhcCcCCCCCCCEEEEeccchhh-hhh-c
Q 009306 262 QQLLSTLLNDGNVKNFLNTDLNFQSRRL-TRKKVLIVFDDVDHP--RQIKILVGRLDLFASGSRIIITTRDRQV-LAN-C 336 (538)
Q Consensus 262 ~~l~~~l~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~iiiTtR~~~~-~~~-~ 336 (538)
+.++..+.... ..+ .+++.+|||||++.. .....+...+....+++.+|++|+.... ... .
T Consensus 90 ~~~~~~~~~~~--------------~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~ 155 (323)
T 1sxj_B 90 RNQIKHFAQKK--------------LHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQ 155 (323)
T ss_dssp HTHHHHHHHBC--------------CCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHH
T ss_pred HHHHHHHHhcc--------------ccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHH
Confidence 22222211000 001 345789999999753 3344444433333456788887765422 111 1
Q ss_pred CCCeeEEcCCCCHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhcCCcH-HHHHHHHH
Q 009306 337 GVDEVYQMEELVHDDALRLFSRHAFGGDHPHESHTELACKTIKYARGVPL-ALEVLGRY 394 (538)
Q Consensus 337 ~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PL-al~~~~~~ 394 (538)
.....+++.+++.++..+++...+... ......+....+++.++|+|. ++..+...
T Consensus 156 sr~~~i~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~l~~~~~G~~r~a~~~l~~~ 212 (323)
T 1sxj_B 156 SQCAILRYSKLSDEDVLKRLLQIIKLE--DVKYTNDGLEAIIFTAEGDMRQAINNLQST 212 (323)
T ss_dssp TTSEEEECCCCCHHHHHHHHHHHHHHH--TCCBCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhceEEeecCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 234589999999999999998876221 112346778899999999995 44544433
No 24
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.22 E-value=8e-11 Score=116.57 Aligned_cols=190 Identities=16% Similarity=0.128 Sum_probs=116.3
Q ss_pred CCCCCCCceeccchhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhccce-e-eEEEEeehhhhhhcCChHHH
Q 009306 183 FHSENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHF-S-GSYFARNVREAEETCRLGDL 260 (538)
Q Consensus 183 ~~~~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f-~-~~~~~~~~~~~~~~~~~~~l 260 (538)
.|.....++|++..++.|..++..+ ..+.+.|+|++|+|||++|+.+++.+.... . ..+.+. .........+...
T Consensus 20 ~p~~~~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~ 96 (327)
T 1iqp_A 20 RPQRLDDIVGQEHIVKRLKHYVKTG--SMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELN-ASDERGINVIREK 96 (327)
T ss_dssp CCCSTTTCCSCHHHHHHHHHHHHHT--CCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEE-TTCHHHHHTTHHH
T ss_pred CCCCHHHhhCCHHHHHHHHHHHHcC--CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEee-ccccCchHHHHHH
Confidence 3445577999999999999998764 233489999999999999999998764321 1 122222 1110000011111
Q ss_pred HHHHHHHHhcCCCCCCchhhcHHHHHHHhcCCCeEEEEecCCCh--HHHHHHhcCcCCCCCCCEEEEeccchhh-hhhc-
Q 009306 261 RQQLLSTLLNDGNVKNFLNTDLNFQSRRLTRKKVLIVFDDVDHP--RQIKILVGRLDLFASGSRIIITTRDRQV-LANC- 336 (538)
Q Consensus 261 ~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~iiiTtR~~~~-~~~~- 336 (538)
...+. .... ...+++.+||+||++.. .....+...+.....++++|+||..... ...+
T Consensus 97 ~~~~~----~~~~--------------~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~ 158 (327)
T 1iqp_A 97 VKEFA----RTKP--------------IGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQ 158 (327)
T ss_dssp HHHHH----HSCC--------------GGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHH
T ss_pred HHHHH----hhCC--------------cCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHH
Confidence 11110 0000 01256789999999753 4455555444433567788888765422 1111
Q ss_pred CCCeeEEcCCCCHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhcCCcHHHHHHHHHh
Q 009306 337 GVDEVYQMEELVHDDALRLFSRHAFGGDHPHESHTELACKTIKYARGVPLALEVLGRYL 395 (538)
Q Consensus 337 ~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~L 395 (538)
.....+.+.+++.++..+++...+... ......+....+++.++|+|..+..+...+
T Consensus 159 sr~~~~~~~~l~~~~~~~~l~~~~~~~--~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~ 215 (327)
T 1iqp_A 159 SRCAIFRFRPLRDEDIAKRLRYIAENE--GLELTEEGLQAILYIAEGDMRRAINILQAA 215 (327)
T ss_dssp HTEEEEECCCCCHHHHHHHHHHHHHTT--TCEECHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhCcEEEecCCCHHHHHHHHHHHHHhc--CCCCCHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 122478999999999999998876322 223456778899999999998665544433
No 25
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.22 E-value=6.1e-10 Score=110.15 Aligned_cols=257 Identities=17% Similarity=0.131 Sum_probs=151.6
Q ss_pred CCCCCceeccchhHHHHHhhhc---CCCCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhhcCChHHHH
Q 009306 185 SENEDLVGVRLPMKEIESLLRT---GSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEETCRLGDLR 261 (538)
Q Consensus 185 ~~~~~~vGR~~~l~~l~~~L~~---~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~ 261 (538)
.....|+|++..++.+...+.. .......+.|+|++|+|||+||+.+++.....| .++. . ........+.
T Consensus 9 ~~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~---~~~~-~---~~~~~~~~l~ 81 (324)
T 1hqc_A 9 KTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNL---RVTS-G---PAIEKPGDLA 81 (324)
T ss_dssp CSTTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTCCE---EEEC-T---TTCCSHHHHH
T ss_pred ccHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCCCE---EEEe-c---cccCChHHHH
Confidence 3457899999999998887753 112335689999999999999999998764332 2332 1 1111111111
Q ss_pred HHHHHHHhcCCCCCCchhhcHHHHHHHhcCCCeEEEEecCCCh--HHHHHHhcCcCCC------------------CCCC
Q 009306 262 QQLLSTLLNDGNVKNFLNTDLNFQSRRLTRKKVLIVFDDVDHP--RQIKILVGRLDLF------------------ASGS 321 (538)
Q Consensus 262 ~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~------------------~~~~ 321 (538)
..+.. . ..++.+|+||+++.. .....+...+... .++.
T Consensus 82 ----~~l~~-----------------~-~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~ 139 (324)
T 1hqc_A 82 ----AILAN-----------------S-LEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRF 139 (324)
T ss_dssp ----HHHTT-----------------T-CCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCC
T ss_pred ----HHHHH-----------------h-ccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCE
Confidence 11100 0 135679999999754 2333332211110 1245
Q ss_pred EEEEeccchhhh-hhc--CCCeeEEcCCCCHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhcCCcHHHHHHHHHhcCC
Q 009306 322 RIIITTRDRQVL-ANC--GVDEVYQMEELVHDDALRLFSRHAFGGDHPHESHTELACKTIKYARGVPLALEVLGRYLYGK 398 (538)
Q Consensus 322 ~iiiTtR~~~~~-~~~--~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~L~~~ 398 (538)
.+|.+|...... ..+ .....+.+++++.++..+++...+.... .....+....++++++|+|..+..+...+...
T Consensus 140 ~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~--~~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~ 217 (324)
T 1hqc_A 140 TLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLG--VRITEEAALEIGRRSRGTMRVAKRLFRRVRDF 217 (324)
T ss_dssp EEEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTT--CCCCHHHHHHHHHHSCSCHHHHHHHHHHHTTT
T ss_pred EEEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 666666543221 111 1235789999999999999988763322 23456778899999999998887776655321
Q ss_pred ---------CHHHHHHHHHHhhcCCCCcHHHHHHHhHhCCCHHhHHHhhccccc--cCCCCHHHHHHHHHhCCCChHHHH
Q 009306 399 ---------RREVWENAKSKWETAPPKGIQDALKISYDGLDDKEQNIFLDIACF--FIDEDRDTATKFLDDCEFFATSAI 467 (538)
Q Consensus 399 ---------~~~~~~~~l~~l~~~~~~~v~~~l~~s~~~L~~~~k~~l~~la~f--~~~~~~~~l~~l~~~~~~~~~~~l 467 (538)
+.......+..+ ......+++.++.++..+... .++++...+...++.+.......+
T Consensus 218 a~~~~~~~i~~~~~~~~~~~~------------~~~~~~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~lgi~~~tl~~~l 285 (324)
T 1hqc_A 218 AQVAGEEVITRERALEALAAL------------GLDELGLEKRDREILEVLILRFGGGPVGLATLATALSEDPGTLEEVH 285 (324)
T ss_dssp STTTSCSCCCHHHHHHHHHHH------------TCCTTCCCHHHHHHHHHHHHHSCSSCCCHHHHHHHTTSCHHHHHHHT
T ss_pred HHHhcCCCCCHHHHHHHHHHh------------cccccCCCHHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHHH
Confidence 122222222221 122345777777777766543 234667777777654433334444
Q ss_pred HH-HhhCCceeEecCCcE
Q 009306 468 EV-LVDKHLITISVLNKI 484 (538)
Q Consensus 468 ~~-L~~~~Li~~~~~~~~ 484 (538)
+. +++.++|.....|+.
T Consensus 286 ~~~~i~~~li~~~~~g~~ 303 (324)
T 1hqc_A 286 EPYLIRQGLLKRTPRGRV 303 (324)
T ss_dssp HHHHHHTTSEEEETTEEE
T ss_pred hHHHHHhcchhcCCccce
Confidence 44 889999997755543
No 26
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.10 E-value=1.3e-09 Score=107.39 Aligned_cols=188 Identities=11% Similarity=0.072 Sum_probs=116.3
Q ss_pred cCCCCCCCceeccchhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhccc-eee-EEEEeehhhhhhcCChHH
Q 009306 182 TFHSENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRH-FSG-SYFARNVREAEETCRLGD 259 (538)
Q Consensus 182 ~~~~~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~-~~~~~~~~~~~~~~~~~~ 259 (538)
..|.....++|++..++.+..++..+. .+.+.|+|++|+|||++|+.+++.+... +.. .+.+. .........+..
T Consensus 11 ~~p~~~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~ 87 (319)
T 2chq_A 11 YRPRTLDEVVGQDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMN-ASDERGIDVVRH 87 (319)
T ss_dssp TSCSSGGGSCSCHHHHHHHHTTTTTTC--CCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEE-TTSTTCTTTSSH
T ss_pred cCCCCHHHHhCCHHHHHHHHHHHhCCC--CCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEe-CccccChHHHHH
Confidence 344455779999999999999887542 2338999999999999999999876322 111 12222 111000011111
Q ss_pred HHHHHHHHHhcCCCCCCchhhcHHHHHHHh-cCCCeEEEEecCCCh--HHHHHHhcCcCCCCCCCEEEEeccchh-hhhh
Q 009306 260 LRQQLLSTLLNDGNVKNFLNTDLNFQSRRL-TRKKVLIVFDDVDHP--RQIKILVGRLDLFASGSRIIITTRDRQ-VLAN 335 (538)
Q Consensus 260 l~~~l~~~l~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~iiiTtR~~~-~~~~ 335 (538)
....+.... .+ .+++.++||||++.. .....+...+.....+..+|++|.... +...
T Consensus 88 ~~~~~~~~~-------------------~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~ 148 (319)
T 2chq_A 88 KIKEFARTA-------------------PIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEP 148 (319)
T ss_dssp HHHHHHHSC-------------------CSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHH
T ss_pred HHHHHHhcC-------------------CCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchH
Confidence 111111000 01 246789999999753 445666666655556777887776543 2111
Q ss_pred -cCCCeeEEcCCCCHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhcCCcHHHHHHHH
Q 009306 336 -CGVDEVYQMEELVHDDALRLFSRHAFGGDHPHESHTELACKTIKYARGVPLALEVLGR 393 (538)
Q Consensus 336 -~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~ 393 (538)
......+++.+++.++..+++...+... ......+....+++.++|++..+.....
T Consensus 149 l~sr~~~i~~~~~~~~~~~~~l~~~~~~~--~~~i~~~~l~~l~~~~~G~~r~~~~~l~ 205 (319)
T 2chq_A 149 IQSRCAVFRFKPVPKEAMKKRLLEICEKE--GVKITEDGLEALIYISGGDFRKAINALQ 205 (319)
T ss_dssp HHTTCEEEECCCCCHHHHHHHHHHHHHTT--CCCBCHHHHHHHHHTTTTCHHHHHHHHH
T ss_pred HHhhCeEEEecCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 1233589999999999999998876322 2234567788899999999976544433
No 27
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.02 E-value=6.3e-09 Score=103.50 Aligned_cols=262 Identities=15% Similarity=0.141 Sum_probs=152.9
Q ss_pred CCCCCceeccchhHHHHHhhhcC---CCCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhhcCChHHHH
Q 009306 185 SENEDLVGVRLPMKEIESLLRTG---STNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEETCRLGDLR 261 (538)
Q Consensus 185 ~~~~~~vGR~~~l~~l~~~L~~~---~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~ 261 (538)
.....++|++..++.+..++... ......+.|+|++|+|||+||+.+++.....| +.+. .. .......+.
T Consensus 26 ~~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~---~~~~-~~---~~~~~~~~~ 98 (338)
T 3pfi_A 26 SNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSANI---KTTA-AP---MIEKSGDLA 98 (338)
T ss_dssp CSGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCE---EEEE-GG---GCCSHHHHH
T ss_pred CCHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCe---EEec-ch---hccchhHHH
Confidence 34578999999999999888642 23345689999999999999999998865443 2222 11 011111110
Q ss_pred HHHHHHHhcCCCCCCchhhcHHHHHHHhcCCCeEEEEecCCCh--HHHHHHhcCcCCC------------------CCCC
Q 009306 262 QQLLSTLLNDGNVKNFLNTDLNFQSRRLTRKKVLIVFDDVDHP--RQIKILVGRLDLF------------------ASGS 321 (538)
Q Consensus 262 ~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~------------------~~~~ 321 (538)
.+ +.. ..++.+|+||+++.. .....+...+... .++.
T Consensus 99 -~~--------------------~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (338)
T 3pfi_A 99 -AI--------------------LTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKF 155 (338)
T ss_dssp -HH--------------------HHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCC
T ss_pred -HH--------------------HHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCe
Confidence 11 100 245679999999743 3333332222110 1235
Q ss_pred EEEEeccchhhh-hhc--CCCeeEEcCCCCHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhcCCcHHHHHHHHHhc--
Q 009306 322 RIIITTRDRQVL-ANC--GVDEVYQMEELVHDDALRLFSRHAFGGDHPHESHTELACKTIKYARGVPLALEVLGRYLY-- 396 (538)
Q Consensus 322 ~iiiTtR~~~~~-~~~--~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~L~-- 396 (538)
.+|.+|...... ..+ .....+.+++++.++..+++...+.. .......+....+++.+.|+|-.+..+...+.
T Consensus 156 ~~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~--~~~~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~ 233 (338)
T 3pfi_A 156 TLIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALK--LNKTCEEKAALEIAKRSRSTPRIALRLLKRVRDF 233 (338)
T ss_dssp EEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHH--TTCEECHHHHHHHHHTTTTCHHHHHHHHHHHHHH
T ss_pred EEEEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHh--cCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 566666543221 111 23468999999999999999887622 12234567788889999999966655444321
Q ss_pred ----CC---CHHHHHHHHHHhhcCCCCcHHHHHHHhHhCCCHHhHHHhhcccccc-CCCCHHHHHHHHHhCCCChHHHHH
Q 009306 397 ----GK---RREVWENAKSKWETAPPKGIQDALKISYDGLDDKEQNIFLDIACFF-IDEDRDTATKFLDDCEFFATSAIE 468 (538)
Q Consensus 397 ----~~---~~~~~~~~l~~l~~~~~~~v~~~l~~s~~~L~~~~k~~l~~la~f~-~~~~~~~l~~l~~~~~~~~~~~l~ 468 (538)
+. +.......+.. +..+...++..++.++..++-.. ...+...+...++.+.......++
T Consensus 234 a~~~~~~~i~~~~~~~~~~~------------~~~~~~~l~~~e~~~l~~l~~~~~~~~~~~~~a~~lg~~~~tl~~~l~ 301 (338)
T 3pfi_A 234 ADVNDEEIITEKRANEALNS------------LGVNELGFDAMDLRYLELLTAAKQKPIGLASIAAALSEDENTIEDVIE 301 (338)
T ss_dssp HHHTTCSEECHHHHHHHHHH------------HTCCTTCCCHHHHHHHHHHHHSCSCCBCHHHHHHHTTCCHHHHHHTTH
T ss_pred HHhhcCCccCHHHHHHHHHH------------hCCcccCCCHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHHHh
Confidence 11 12222222221 12223345555566666665542 235677777777554444455666
Q ss_pred -HHhhCCceeEecCCcEEecHHH
Q 009306 469 -VLVDKHLITISVLNKIEMHYLL 490 (538)
Q Consensus 469 -~L~~~~Li~~~~~~~~~~H~lv 490 (538)
.|++.++|.....|+.....-+
T Consensus 302 ~~l~~~gli~~~~~g~~~t~~~~ 324 (338)
T 3pfi_A 302 PYLLANGYIERTAKGRIASAKSY 324 (338)
T ss_dssp HHHHHTTSEEEETTEEEECHHHH
T ss_pred HHHHHcCceecCCCcccccHHHH
Confidence 8999999998867766544433
No 28
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.98 E-value=3e-09 Score=107.23 Aligned_cols=196 Identities=13% Similarity=0.091 Sum_probs=114.5
Q ss_pred CCCCCceeccchhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhhcCChHHHHHHH
Q 009306 185 SENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEETCRLGDLRQQL 264 (538)
Q Consensus 185 ~~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l 264 (538)
.....++|++..++.|...+..+. ..+.+.|+|++|+||||+|+.+++.+....... ... ...... ...+
T Consensus 13 ~~~~~~vg~~~~~~~L~~~l~~~~-~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~-~~~-------~~~~~~-~~~~ 82 (373)
T 1jr3_A 13 QTFADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT-ATP-------CGVCDN-CREI 82 (373)
T ss_dssp CSTTTSCSCHHHHHHHHHHHHHTC-CCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSC-SSC-------CSSSHH-HHHH
T ss_pred CchhhccCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCC-CCC-------CcccHH-HHHH
Confidence 344679999999999999887543 234689999999999999999998764321100 000 000000 0000
Q ss_pred HHH----Hhc-CCCCCCchhhcHHHHHHHh-----cCCCeEEEEecCCC--hHHHHHHhcCcCCCCCCCEEEEeccchh-
Q 009306 265 LST----LLN-DGNVKNFLNTDLNFQSRRL-----TRKKVLIVFDDVDH--PRQIKILVGRLDLFASGSRIIITTRDRQ- 331 (538)
Q Consensus 265 ~~~----l~~-~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~--~~~~~~l~~~l~~~~~~~~iiiTtR~~~- 331 (538)
... +.. ........+. ...+.+.+ .+++.+|||||++. ......+...+.....+..+|++|....
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~ 161 (373)
T 1jr3_A 83 EQGRFVDLIEIDAASRTKVED-TRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQK 161 (373)
T ss_dssp HTSCCSSCEEEETTCSCCSSC-HHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGG
T ss_pred hccCCCceEEecccccCCHHH-HHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHh
Confidence 000 000 0000011111 12222222 24568999999964 3445556555544445667777765442
Q ss_pred hhhh-cCCCeeEEcCCCCHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhcCCcHHHHHHHH
Q 009306 332 VLAN-CGVDEVYQMEELVHDDALRLFSRHAFGGDHPHESHTELACKTIKYARGVPLALEVLGR 393 (538)
Q Consensus 332 ~~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~ 393 (538)
+... ......+++.+++.++..+++...+... ......+....+++.++|+|..+..+..
T Consensus 162 l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~--~~~~~~~a~~~l~~~~~G~~r~~~~~l~ 222 (373)
T 1jr3_A 162 LPVTILSRCLQFHLKALDVEQIRHQLEHILNEE--HIAHEPRALQLLARAAEGSLRDALSLTD 222 (373)
T ss_dssp SCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHH--TCCBCHHHHHHHHHHSSSCHHHHHHHHH
T ss_pred CcHHHHhheeEeeCCCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHCCCCHHHHHHHHH
Confidence 2111 1234689999999999999998765221 1223466788899999999987766543
No 29
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.88 E-value=8.8e-09 Score=100.27 Aligned_cols=168 Identities=10% Similarity=0.068 Sum_probs=98.7
Q ss_pred CCceeccchhHHHHHhhhc--CCCCceEEEEeccCCCchhHHHHHHHHhhccce-------eeEEEEeehhhhhhcCChH
Q 009306 188 EDLVGVRLPMKEIESLLRT--GSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHF-------SGSYFARNVREAEETCRLG 258 (538)
Q Consensus 188 ~~~vGR~~~l~~l~~~L~~--~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f-------~~~~~~~~~~~~~~~~~~~ 258 (538)
..+.||+.|+++|...|.. ..+....+.|+|++|.|||++++.+++++.... -..+++.+. ......
T Consensus 20 ~~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~----~~~t~~ 95 (318)
T 3te6_A 20 ELLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDAL----ELAGMD 95 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETT----CCC--H
T ss_pred cccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEecc----ccCCHH
Confidence 3488999999999988765 234566789999999999999999999875321 123444422 234455
Q ss_pred HHHHHHHHHHhcCCCCCCchhhcHHHHHHHh---cCCCeEEEEecCCChH---HHHHHhcCcCCCCCCCEEEEeccchh-
Q 009306 259 DLRQQLLSTLLNDGNVKNFLNTDLNFQSRRL---TRKKVLIVFDDVDHPR---QIKILVGRLDLFASGSRIIITTRDRQ- 331 (538)
Q Consensus 259 ~l~~~l~~~l~~~~~~~~~~~~~~~~l~~~l---~~k~~LlVlDdv~~~~---~~~~l~~~l~~~~~~~~iiiTtR~~~- 331 (538)
.++..+..++.+..............+...+ .+++++++||+++... .+-.+............||.++....
T Consensus 96 ~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~ 175 (318)
T 3te6_A 96 ALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNVT 175 (318)
T ss_dssp HHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSCC
T ss_pred HHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCccc
Confidence 6677777777554221111122222222222 4567999999997642 22222211000011223333343221
Q ss_pred ---hh-----hhcCCCeeEEcCCCCHHHHHHHHHhhh
Q 009306 332 ---VL-----ANCGVDEVYQMEELVHDDALRLFSRHA 360 (538)
Q Consensus 332 ---~~-----~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 360 (538)
.+ ..+. ...+.+++++.+|..+++..++
T Consensus 176 ~~~~L~~~v~SR~~-~~~i~F~pYt~~el~~Il~~Rl 211 (318)
T 3te6_A 176 IREQINIMPSLKAH-FTEIKLNKVDKNELQQMIITRL 211 (318)
T ss_dssp CHHHHHTCHHHHTT-EEEEECCCCCHHHHHHHHHHHH
T ss_pred chhhcchhhhccCC-ceEEEeCCCCHHHHHHHHHHHH
Confidence 11 1221 2578999999999999998887
No 30
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.86 E-value=6.1e-09 Score=97.97 Aligned_cols=176 Identities=14% Similarity=0.107 Sum_probs=102.5
Q ss_pred CCCCceecc---chhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhhcCChHHHHH
Q 009306 186 ENEDLVGVR---LPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEETCRLGDLRQ 262 (538)
Q Consensus 186 ~~~~~vGR~---~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~ 262 (538)
..++|+|+. ..++.+..+...+ ..+.+.|+|++|+||||||+.+++........+.++.. ..... .+
T Consensus 26 ~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~-~~~~~--~~----- 95 (242)
T 3bos_A 26 TFTSYYPAAGNDELIGALKSAASGD--GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPL-GIHAS--IS----- 95 (242)
T ss_dssp STTTSCC--CCHHHHHHHHHHHHTC--SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEG-GGGGG--SC-----
T ss_pred ChhhccCCCCCHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEH-HHHHH--HH-----
Confidence 346788743 4455555555432 45679999999999999999999887654334455542 11100 00
Q ss_pred HHHHHHhcCCCCCCchhhcHHHHHHHhcCCCeEEEEecCCChH--H--HHHHhcCcCCC-CCC-CEEEEeccchh-----
Q 009306 263 QLLSTLLNDGNVKNFLNTDLNFQSRRLTRKKVLIVFDDVDHPR--Q--IKILVGRLDLF-ASG-SRIIITTRDRQ----- 331 (538)
Q Consensus 263 ~l~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~--~~~l~~~l~~~-~~~-~~iiiTtR~~~----- 331 (538)
.... +.+ .++.+|||||++... . .+.+...+... ..+ .++|+||+...
T Consensus 96 ----------------~~~~----~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~ 154 (242)
T 3bos_A 96 ----------------TALL----EGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGF 154 (242)
T ss_dssp ----------------GGGG----TTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTC
T ss_pred ----------------HHHH----Hhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHH
Confidence 0000 001 346799999996431 1 22222221100 122 24777776331
Q ss_pred ----hhhhcCCCeeEEcCCCCHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhcCCcHHHHHHHHH
Q 009306 332 ----VLANCGVDEVYQMEELVHDDALRLFSRHAFGGDHPHESHTELACKTIKYARGVPLALEVLGRY 394 (538)
Q Consensus 332 ----~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~ 394 (538)
+...+.....+++++++.++..+++...+... ......+....+++.++|++..+..+...
T Consensus 155 ~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~l~~~~~g~~r~l~~~l~~ 219 (242)
T 3bos_A 155 VLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMR--GLQLPEDVGRFLLNRMARDLRTLFDVLDR 219 (242)
T ss_dssp CCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHT--TCCCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred hhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHccCCHHHHHHHHHH
Confidence 11111122689999999999999998876321 12344677889999999998776655443
No 31
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.85 E-value=7.3e-09 Score=93.54 Aligned_cols=49 Identities=18% Similarity=0.295 Sum_probs=41.4
Q ss_pred CCCCceeccchhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhc
Q 009306 186 ENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKIS 236 (538)
Q Consensus 186 ~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (538)
....++||+.+++.+.+.+..+ ..+.+.|+|++|+|||+||+.+++.+.
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 20 KLDPVIGRDEEIRRTIQVLQRR--TKNNPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp CSCCCCSCHHHHHHHHHHHTSS--SSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred cccccccchHHHHHHHHHHhcC--CCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 3467999999999999988753 345689999999999999999998764
No 32
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.84 E-value=8.3e-08 Score=96.00 Aligned_cols=203 Identities=15% Similarity=0.107 Sum_probs=115.5
Q ss_pred hhHHHHHHHHhhhccccccCCCCCCCceeccchhHHHHHhhhc----------CCCCceEEEEeccCCCchhHHHHHHHH
Q 009306 164 ESALIEEIVNAILKRLDDTFHSENEDLVGVRLPMKEIESLLRT----------GSTNVYKLGIWGIGGIGKTTIAGAIFN 233 (538)
Q Consensus 164 e~~~i~~i~~~~~~~~~~~~~~~~~~~vGR~~~l~~l~~~L~~----------~~~~~~~v~I~G~~GiGKTtLa~~~~~ 233 (538)
+...++.+...+....+ +..-..++|.+..++.|.+.+.. .....+.+.|+|++|+|||+||+.++.
T Consensus 63 ~~~~~~~i~~~i~~~~~---~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~ 139 (357)
T 3d8b_A 63 EPKMIELIMNEIMDHGP---PVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIAS 139 (357)
T ss_dssp CHHHHHHHHHHTBCCSC---CCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHH
T ss_pred ChHHHHHHHhhcccCCC---CCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHH
Confidence 45566666666654433 33446799999999999887642 112355799999999999999999998
Q ss_pred hhccceeeEEEEeehhhhhhcCChHHHHHHHHHHHhcCCCCCCchhhcHH-HHHHHhcCCCeEEEEecCCCh--------
Q 009306 234 KISRHFSGSYFARNVREAEETCRLGDLRQQLLSTLLNDGNVKNFLNTDLN-FQSRRLTRKKVLIVFDDVDHP-------- 304 (538)
Q Consensus 234 ~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~-~l~~~l~~k~~LlVlDdv~~~-------- 304 (538)
.....| +.+. ....... .. ........ .+......++.+|+||+++..
T Consensus 140 ~~~~~~---~~i~-~~~l~~~-~~------------------g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~ 196 (357)
T 3d8b_A 140 QSGATF---FSIS-ASSLTSK-WV------------------GEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGE 196 (357)
T ss_dssp HTTCEE---EEEE-GGGGCCS-ST------------------THHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC-----
T ss_pred HcCCeE---EEEe-hHHhhcc-cc------------------chHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCc
Confidence 764322 2222 2111100 00 00011111 111122356789999999532
Q ss_pred -----HHHHHHhcCcC----CCCCCCEEEEeccchhhh-hh--cCCCeeEEcCCCCHHHHHHHHHhhhcCCCCCCCchHH
Q 009306 305 -----RQIKILVGRLD----LFASGSRIIITTRDRQVL-AN--CGVDEVYQMEELVHDDALRLFSRHAFGGDHPHESHTE 372 (538)
Q Consensus 305 -----~~~~~l~~~l~----~~~~~~~iiiTtR~~~~~-~~--~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~ 372 (538)
.....++..+. ....+..||.||.....+ .. -.....+.++..+.++..+++...+... ......+
T Consensus 197 ~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~--~~~l~~~ 274 (357)
T 3d8b_A 197 HESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKE--QCCLSEE 274 (357)
T ss_dssp -CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTS--CBCCCHH
T ss_pred chHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhc--CCCccHH
Confidence 11223322221 112344556566543211 11 1334578899999999999988776222 1123356
Q ss_pred HHHHHHHHhcC-CcHHHHHHHHH
Q 009306 373 LACKTIKYARG-VPLALEVLGRY 394 (538)
Q Consensus 373 ~~~~i~~~~~G-~PLal~~~~~~ 394 (538)
....+++.+.| .+..|..+...
T Consensus 275 ~l~~la~~t~G~s~~dl~~l~~~ 297 (357)
T 3d8b_A 275 EIEQIVQQSDAFSGADMTQLCRE 297 (357)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHH
Confidence 77889999988 45566666553
No 33
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.84 E-value=3.5e-08 Score=103.80 Aligned_cols=195 Identities=15% Similarity=0.177 Sum_probs=107.0
Q ss_pred CCCCCCCceeccchhHHHHHhhhcC---------------CCCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEee
Q 009306 183 FHSENEDLVGVRLPMKEIESLLRTG---------------STNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARN 247 (538)
Q Consensus 183 ~~~~~~~~vGR~~~l~~l~~~L~~~---------------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~ 247 (538)
.|.....++|++..++.|..++... .+..+.+.|+|++|+|||++|+.+++... +. .+.+.
T Consensus 34 rP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~--~~-~i~in- 109 (516)
T 1sxj_A 34 APTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG--YD-ILEQN- 109 (516)
T ss_dssp CCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTT--CE-EEEEC-
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcC--CC-EEEEe-
Confidence 3445578999999999999988641 01346899999999999999999999873 21 22222
Q ss_pred hhhhhhcCChHHHHHHHHHHHhcCCCCCCchhhcHHHHHHHhcCCCeEEEEecCCCh-----HHHHHHhcCcCCCCCCCE
Q 009306 248 VREAEETCRLGDLRQQLLSTLLNDGNVKNFLNTDLNFQSRRLTRKKVLIVFDDVDHP-----RQIKILVGRLDLFASGSR 322 (538)
Q Consensus 248 ~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-----~~~~~l~~~l~~~~~~~~ 322 (538)
. +.... ..+....+.................. ......++.+|+||+++.. ..+..+...+. ..+..
T Consensus 110 ~---s~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~--~~~~~ 181 (516)
T 1sxj_A 110 A---SDVRS-KTLLNAGVKNALDNMSVVGYFKHNEE--AQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCR--KTSTP 181 (516)
T ss_dssp T---TSCCC-HHHHHHTGGGGTTBCCSTTTTTC------CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHH--HCSSC
T ss_pred C---CCcch-HHHHHHHHHHHhccccHHHHHhhhhh--hhhccCCCeEEEEECCCccchhhHHHHHHHHHHHH--hcCCC
Confidence 1 11111 12222222211111111111111000 0011357789999999643 11233332222 12344
Q ss_pred EEEeccchh---hhhhcCCCeeEEcCCCCHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhcCCcHH-HHHH
Q 009306 323 IIITTRDRQ---VLANCGVDEVYQMEELVHDDALRLFSRHAFGGDHPHESHTELACKTIKYARGVPLA-LEVL 391 (538)
Q Consensus 323 iiiTtR~~~---~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLa-l~~~ 391 (538)
||+++.+.. +.........+.+++++.++..+++...+..... ....+....+++.++|.+-. +..+
T Consensus 182 iIli~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~--~i~~~~l~~la~~s~GdiR~~i~~L 252 (516)
T 1sxj_A 182 LILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKF--KLDPNVIDRLIQTTRGDIRQVINLL 252 (516)
T ss_dssp EEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTC--CCCTTHHHHHHHHTTTCHHHHHHHH
T ss_pred EEEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCcHHHHHHHH
Confidence 555554321 2222233467899999999999998776532111 12345578899999996644 4444
No 34
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.82 E-value=2.4e-08 Score=96.62 Aligned_cols=183 Identities=19% Similarity=0.215 Sum_probs=104.3
Q ss_pred CCCCCceeccchhHHHHHhhhc-----------CCCCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhh
Q 009306 185 SENEDLVGVRLPMKEIESLLRT-----------GSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEE 253 (538)
Q Consensus 185 ~~~~~~vGR~~~l~~l~~~L~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~ 253 (538)
....+++|.+..+++|.+.+.. +....+.+.|+|++|+|||+||+.++......| +.+. ......
T Consensus 14 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~---~~v~-~~~~~~ 89 (285)
T 3h4m_A 14 VRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATF---IRVV-GSELVK 89 (285)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEE---EEEE-GGGGCC
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCE---EEEe-hHHHHH
Confidence 3457799999999999887643 123445699999999999999999998865432 1222 111100
Q ss_pred cCChHHHHHHHHHHHhcCCCCCCchhhcHHHHHHHhcCCCeEEEEecCCCh----------------HHHHHHhcCcC--
Q 009306 254 TCRLGDLRQQLLSTLLNDGNVKNFLNTDLNFQSRRLTRKKVLIVFDDVDHP----------------RQIKILVGRLD-- 315 (538)
Q Consensus 254 ~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~----------------~~~~~l~~~l~-- 315 (538)
. .... ........+.......+.+|+|||++.. ..+..++..+.
T Consensus 90 ~-~~~~-----------------~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~ 151 (285)
T 3h4m_A 90 K-FIGE-----------------GASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGF 151 (285)
T ss_dssp C-STTH-----------------HHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTT
T ss_pred h-ccch-----------------HHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCC
Confidence 0 0000 0011111122223456789999999643 12222222221
Q ss_pred CCCCCCEEEEeccchhhhh-----hcCCCeeEEcCCCCHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhcC-CcHHHH
Q 009306 316 LFASGSRIIITTRDRQVLA-----NCGVDEVYQMEELVHDDALRLFSRHAFGGDHPHESHTELACKTIKYARG-VPLALE 389 (538)
Q Consensus 316 ~~~~~~~iiiTtR~~~~~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G-~PLal~ 389 (538)
....+..||.||.....+. .......+.++.++.++..+++........... ......++..+.| .|-.|.
T Consensus 152 ~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~---~~~~~~l~~~~~g~~~~~i~ 228 (285)
T 3h4m_A 152 DARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAE---DVNLEEIAKMTEGCVGAELK 228 (285)
T ss_dssp CSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCT---TCCHHHHHHHCTTCCHHHHH
T ss_pred CCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCC---cCCHHHHHHHcCCCCHHHHH
Confidence 1133566777776543321 112335789999999999999988873322211 1124567777777 454555
Q ss_pred HHH
Q 009306 390 VLG 392 (538)
Q Consensus 390 ~~~ 392 (538)
.+.
T Consensus 229 ~l~ 231 (285)
T 3h4m_A 229 AIC 231 (285)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 35
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.78 E-value=3.4e-08 Score=98.67 Aligned_cols=196 Identities=9% Similarity=0.061 Sum_probs=112.0
Q ss_pred CCCCCCceeccchhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhccc--eee-EEEEeehhhhhhcCChHHH
Q 009306 184 HSENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRH--FSG-SYFARNVREAEETCRLGDL 260 (538)
Q Consensus 184 ~~~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~--f~~-~~~~~~~~~~~~~~~~~~l 260 (538)
|.....++|++..++.|...+..+.. +.+.|+|++|+||||+|+.++..+... +.. ...+. . ........+
T Consensus 33 p~~~~~i~g~~~~~~~l~~~l~~~~~--~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~-~---~~~~~~~~~ 106 (353)
T 1sxj_D 33 PKNLDEVTAQDHAVTVLKKTLKSANL--PHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELN-A---SDERGISIV 106 (353)
T ss_dssp CSSTTTCCSCCTTHHHHHHHTTCTTC--CCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEEC-S---SSCCCHHHH
T ss_pred CCCHHHhhCCHHHHHHHHHHHhcCCC--CEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEc-c---ccccchHHH
Confidence 44457899999999999999875432 238999999999999999999875421 211 12222 1 111122221
Q ss_pred HHHHHHHHhcCCCCCCchhhcHHHHHHHhcCCCeEEEEecCCCh--HHHHHHhcCcCCCCCCCEEEEeccchh-hhhhc-
Q 009306 261 RQQLLSTLLNDGNVKNFLNTDLNFQSRRLTRKKVLIVFDDVDHP--RQIKILVGRLDLFASGSRIIITTRDRQ-VLANC- 336 (538)
Q Consensus 261 ~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~iiiTtR~~~-~~~~~- 336 (538)
.............. .... .....-..++-+|++|+++.. .....+...+.......++|++|.... +...+
T Consensus 107 -~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~ 181 (353)
T 1sxj_D 107 -REKVKNFARLTVSK-PSKH---DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLA 181 (353)
T ss_dssp -TTHHHHHHHSCCCC-CCTT---HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHH
T ss_pred -HHHHHHHhhhcccc-cchh---hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhh
Confidence 22222211110000 0000 000111234569999999643 334444443333345567777764432 21111
Q ss_pred CCCeeEEcCCCCHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhcCCcHHHHHHH
Q 009306 337 GVDEVYQMEELVHDDALRLFSRHAFGGDHPHESHTELACKTIKYARGVPLALEVLG 392 (538)
Q Consensus 337 ~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~ 392 (538)
.....+.+.+++.++..+.+...+... ......+....+++.++|+|..+..+.
T Consensus 182 sR~~~i~~~~~~~~~~~~~l~~~~~~~--~~~i~~~~l~~l~~~~~G~~r~~~~~l 235 (353)
T 1sxj_D 182 SQCSKFRFKALDASNAIDRLRFISEQE--NVKCDDGVLERILDISAGDLRRGITLL 235 (353)
T ss_dssp HHSEEEECCCCCHHHHHHHHHHHHHTT--TCCCCHHHHHHHHHHTSSCHHHHHHHH
T ss_pred ccCceEEeCCCCHHHHHHHHHHHHHHh--CCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 112478999999999999998876322 223446788999999999997654443
No 36
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.77 E-value=1.4e-07 Score=94.93 Aligned_cols=203 Identities=11% Similarity=0.022 Sum_probs=108.5
Q ss_pred CCCceeccchhHHHH---HhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhhcCChHHHHHH
Q 009306 187 NEDLVGVRLPMKEIE---SLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEETCRLGDLRQQ 263 (538)
Q Consensus 187 ~~~~vGR~~~l~~l~---~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ 263 (538)
.+.|+|++..++.+. ..+..+....+.+.|+|++|+|||+||+.++..+....+.. .+.+..-............+
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 121 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFT-AIAGSEIFSLEMSKTEALTQ 121 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEE-EEEGGGGSCSSSCHHHHHHH
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcc-cccchhhhhcccchhHHHHH
Confidence 468999999877654 44444433346799999999999999999999876432211 12211111111122222222
Q ss_pred HHHHHhcC--------------------C--------CC--CCchhhcHHHHHHHh-----cCC----CeEEEEecCCCh
Q 009306 264 LLSTLLND--------------------G--------NV--KNFLNTDLNFQSRRL-----TRK----KVLIVFDDVDHP 304 (538)
Q Consensus 264 l~~~l~~~--------------------~--------~~--~~~~~~~~~~l~~~l-----~~k----~~LlVlDdv~~~ 304 (538)
.+....+. . .. ..........+.... .++ +.+|+||+++..
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~~l 201 (368)
T 3uk6_A 122 AFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHML 201 (368)
T ss_dssp HHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGGGS
T ss_pred HHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhcccc
Confidence 22221100 0 00 000111111111111 122 469999999753
Q ss_pred --HHHHHHhcCcCCCCCCCEEEEeccc------------h-hhhh-hcCCCeeEEcCCCCHHHHHHHHHhhhcCCCCCCC
Q 009306 305 --RQIKILVGRLDLFASGSRIIITTRD------------R-QVLA-NCGVDEVYQMEELVHDDALRLFSRHAFGGDHPHE 368 (538)
Q Consensus 305 --~~~~~l~~~l~~~~~~~~iiiTtR~------------~-~~~~-~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~ 368 (538)
+....+...+...... .++++|.. . .+.. .......+.+++++.++..+++...+.. ....
T Consensus 202 ~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~--~~~~ 278 (368)
T 3uk6_A 202 DIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRIRCEE--EDVE 278 (368)
T ss_dssp BHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHHHHHHHHHH--TTCC
T ss_pred ChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHHHHHHHHHHHH--cCCC
Confidence 4445555444432222 34444421 1 0101 1112245899999999999999987632 1233
Q ss_pred chHHHHHHHHHHhc-CCcHHHHHHHH
Q 009306 369 SHTELACKTIKYAR-GVPLALEVLGR 393 (538)
Q Consensus 369 ~~~~~~~~i~~~~~-G~PLal~~~~~ 393 (538)
...+....+++.+. |.|..+..+..
T Consensus 279 ~~~~~l~~l~~~~~~G~~r~~~~ll~ 304 (368)
T 3uk6_A 279 MSEDAYTVLTRIGLETSLRYAIQLIT 304 (368)
T ss_dssp BCHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred CCHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 45677889999998 88876655444
No 37
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.76 E-value=4.2e-08 Score=98.09 Aligned_cols=201 Identities=11% Similarity=0.038 Sum_probs=108.6
Q ss_pred cCCCCCCCceeccchhHHHHHhh-hcCCCCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEee-------------
Q 009306 182 TFHSENEDLVGVRLPMKEIESLL-RTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARN------------- 247 (538)
Q Consensus 182 ~~~~~~~~~vGR~~~l~~l~~~L-~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~------------- 247 (538)
..|.....++|++..++.+..++ ..+. ... +.|+|++|+||||+++.++..+.....+.+.+..
T Consensus 8 yrP~~~~~~vg~~~~~~~l~~~~~~~~~-~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~ 85 (354)
T 1sxj_E 8 YRPKSLNALSHNEELTNFLKSLSDQPRD-LPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLEL 85 (354)
T ss_dssp TCCCSGGGCCSCHHHHHHHHTTTTCTTC-CCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------
T ss_pred cCCCCHHHhcCCHHHHHHHHHHHhhCCC-CCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeeccccccccee
Confidence 34455578999999999999888 5432 233 8999999999999999999854222111111100
Q ss_pred ----------hhhhhhcCChHHHHHHHHHHHhcCCCCCCchhhcHHHHHHHhcCCCeEEEEecCCCh--HHHHHHhcCcC
Q 009306 248 ----------VREAEETCRLGDLRQQLLSTLLNDGNVKNFLNTDLNFQSRRLTRKKVLIVFDDVDHP--RQIKILVGRLD 315 (538)
Q Consensus 248 ----------~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~l~ 315 (538)
..............+.++..+.......... .+ ..+..++-++|||+++.. .....+...+.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-----~l-s~l~~~~~vlilDE~~~L~~~~~~~L~~~le 159 (354)
T 1sxj_E 86 NVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQD-----SK-DGLAHRYKCVIINEANSLTKDAQAALRRTME 159 (354)
T ss_dssp CCEECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------------CCEEEEEECTTSSCHHHHHHHHHHHH
T ss_pred eeecccceEEecHhhcCCcchHHHHHHHHHHHHhccccccc-----cc-cccCCCCeEEEEeCccccCHHHHHHHHHHHH
Confidence 0000000000001122222221111000000 00 002346779999999753 33344444333
Q ss_pred CCCCCCEEEEeccch-hhhhhc-CCCeeEEcCCCCHHHHHHHHHhhhcCCCCCCCch-HHHHHHHHHHhcCCcHHHHHHH
Q 009306 316 LFASGSRIIITTRDR-QVLANC-GVDEVYQMEELVHDDALRLFSRHAFGGDHPHESH-TELACKTIKYARGVPLALEVLG 392 (538)
Q Consensus 316 ~~~~~~~iiiTtR~~-~~~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~-~~~~~~i~~~~~G~PLal~~~~ 392 (538)
....+..+|++|.+. .+...+ .....+++++++.++..+++...+.... .... .+.+..+++.++|.+..+..+.
T Consensus 160 ~~~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~l~~i~~~~~G~~r~a~~~l 237 (354)
T 1sxj_E 160 KYSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNER--IQLETKDILKRIAQASNGNLRVSLLML 237 (354)
T ss_dssp HSTTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHT--CEECCSHHHHHHHHHHTTCHHHHHHHH
T ss_pred hhcCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcC--CCCCcHHHHHHHHHHcCCCHHHHHHHH
Confidence 334567777777653 222221 2236899999999999999987762211 1223 4667889999999986554443
No 38
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.75 E-value=1.3e-07 Score=93.20 Aligned_cols=185 Identities=13% Similarity=0.088 Sum_probs=106.9
Q ss_pred CCCCCceeccchhHHHHHhhh----------cCCCCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhhc
Q 009306 185 SENEDLVGVRLPMKEIESLLR----------TGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEET 254 (538)
Q Consensus 185 ~~~~~~vGR~~~l~~l~~~L~----------~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~ 254 (538)
..-..++|.+..++.|.+.+. ......+.+.|+|++|+|||+||+.+++.....| +.+. ......
T Consensus 15 ~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~---~~v~-~~~l~~- 89 (322)
T 3eie_A 15 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTF---FSVS-SSDLVS- 89 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEE---EEEE-HHHHHT-
T ss_pred CCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCE---EEEc-hHHHhh-
Confidence 344678999999999988762 1122245699999999999999999998864432 2222 111100
Q ss_pred CChHHHHHHHHHHHhcCCCCCCchhhcHH-HHHHHhcCCCeEEEEecCCChH-------------HHHHHhcCcC---CC
Q 009306 255 CRLGDLRQQLLSTLLNDGNVKNFLNTDLN-FQSRRLTRKKVLIVFDDVDHPR-------------QIKILVGRLD---LF 317 (538)
Q Consensus 255 ~~~~~l~~~l~~~l~~~~~~~~~~~~~~~-~l~~~l~~k~~LlVlDdv~~~~-------------~~~~l~~~l~---~~ 317 (538)
... ........ ........++.+|+||+++... ....++..+. ..
T Consensus 90 ------------~~~------g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 151 (322)
T 3eie_A 90 ------------KWM------GESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGND 151 (322)
T ss_dssp ------------TTG------GGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTS
T ss_pred ------------ccc------chHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcccccc
Confidence 000 00111111 1122224577899999997431 1233322221 12
Q ss_pred CCCCEEEEeccchhhhhh---cCCCeeEEcCCCCHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhcCC-cHHHHHHHH
Q 009306 318 ASGSRIIITTRDRQVLAN---CGVDEVYQMEELVHDDALRLFSRHAFGGDHPHESHTELACKTIKYARGV-PLALEVLGR 393 (538)
Q Consensus 318 ~~~~~iiiTtR~~~~~~~---~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~-PLal~~~~~ 393 (538)
..+..||.||.....+.. -.....+.++..+.++-.+++..++.. .+..........+++.+.|. +-.|..+..
T Consensus 152 ~~~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~--~~~~~~~~~l~~la~~t~g~sg~di~~l~~ 229 (322)
T 3eie_A 152 SQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGD--TPCVLTKEDYRTLGAMTEGYSGSDIAVVVK 229 (322)
T ss_dssp CCCEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTT--CCCCCCHHHHHHHHHTTTTCCHHHHHHHHH
T ss_pred CCceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhcc--CCCCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 345556666655322110 024467889999999999999988732 22223455677888888874 555555544
Q ss_pred H
Q 009306 394 Y 394 (538)
Q Consensus 394 ~ 394 (538)
.
T Consensus 230 ~ 230 (322)
T 3eie_A 230 D 230 (322)
T ss_dssp H
T ss_pred H
Confidence 3
No 39
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.73 E-value=5.6e-08 Score=99.93 Aligned_cols=185 Identities=16% Similarity=0.138 Sum_probs=106.5
Q ss_pred CCCce-eccchh--HHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhcccee--eEEEEeehhhhhhcCChHHHH
Q 009306 187 NEDLV-GVRLPM--KEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFS--GSYFARNVREAEETCRLGDLR 261 (538)
Q Consensus 187 ~~~~v-GR~~~l--~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~--~~~~~~~~~~~~~~~~~~~l~ 261 (538)
.++|+ |....+ ..+......... ...+.|+|++|+||||||+.+++.+...++ ..+++. .. .+.
T Consensus 104 fd~fv~g~~n~~a~~~~~~~a~~~~~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~-~~---------~~~ 172 (440)
T 2z4s_A 104 FENFVVGPGNSFAYHAALEVAKHPGR-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT-SE---------KFL 172 (440)
T ss_dssp GGGCCCCTTTHHHHHHHHHHHHSTTS-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEE-HH---------HHH
T ss_pred hhhcCCCCchHHHHHHHHHHHhCCCC-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee-HH---------HHH
Confidence 34566 655443 233333333222 567999999999999999999998765542 234443 11 122
Q ss_pred HHHHHHHhcCCCCCCchhhcHHHHHHHhcCCCeEEEEecCCCh----HHHHHHhcCcCC-CCCCCEEEEeccch------
Q 009306 262 QQLLSTLLNDGNVKNFLNTDLNFQSRRLTRKKVLIVFDDVDHP----RQIKILVGRLDL-FASGSRIIITTRDR------ 330 (538)
Q Consensus 262 ~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~----~~~~~l~~~l~~-~~~~~~iiiTtR~~------ 330 (538)
..+...+... ....+.+.+..++.+|+|||++.. ...+.+...+.. ...+..||+||.+.
T Consensus 173 ~~~~~~~~~~---------~~~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~ 243 (440)
T 2z4s_A 173 NDLVDSMKEG---------KLNEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSE 243 (440)
T ss_dssp HHHHHHHHTT---------CHHHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSS
T ss_pred HHHHHHHHcc---------cHHHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHH
Confidence 2333333221 112233334436789999999532 222333322211 13567888888753
Q ss_pred ---hhhhhcCCCeeEEcCCCCHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhcCCcHHHHHHHH
Q 009306 331 ---QVLANCGVDEVYQMEELVHDDALRLFSRHAFGGDHPHESHTELACKTIKYARGVPLALEVLGR 393 (538)
Q Consensus 331 ---~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~ 393 (538)
.+...+.....+.+++++.++..+++...+.... .....+....+++.++|++--+.-+..
T Consensus 244 l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~--~~i~~e~l~~la~~~~gn~R~l~~~L~ 307 (440)
T 2z4s_A 244 FQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEH--GELPEEVLNFVAENVDDNLRRLRGAII 307 (440)
T ss_dssp CCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHT--CCCCTTHHHHHHHHCCSCHHHHHHHHH
T ss_pred HHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHhcCCCHHHHHHHHH
Confidence 2222232335788999999999999988762111 122345577888999999876654433
No 40
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.71 E-value=3.8e-07 Score=87.58 Aligned_cols=169 Identities=13% Similarity=0.097 Sum_probs=93.9
Q ss_pred CCceeccchhHHHHH-------hhhc-CCCCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhhcCChHH
Q 009306 188 EDLVGVRLPMKEIES-------LLRT-GSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEETCRLGD 259 (538)
Q Consensus 188 ~~~vGR~~~l~~l~~-------~L~~-~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 259 (538)
..++|....++.+.. .+.. +....+.+.|+|++|+|||+||+.+++.....| +.+.+.... .......
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~---~~i~~~~~~-~g~~~~~ 108 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPF---IKICSPDKM-IGFSETA 108 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSE---EEEECGGGC-TTCCHHH
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCE---EEEeCHHHh-cCCchHH
Confidence 567888877666655 2221 234567899999999999999999998754332 222211100 0000000
Q ss_pred HHHHHHHHHhcCCCCCCchhhcHHHHHHHhcCCCeEEEEecCCCh------------HHHHHHhcCcCC---CCCCCEEE
Q 009306 260 LRQQLLSTLLNDGNVKNFLNTDLNFQSRRLTRKKVLIVFDDVDHP------------RQIKILVGRLDL---FASGSRII 324 (538)
Q Consensus 260 l~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~------------~~~~~l~~~l~~---~~~~~~ii 324 (538)
. .......+......++.+|+|||++.. ..++.+...+.. .+....||
T Consensus 109 ~-----------------~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii 171 (272)
T 1d2n_A 109 K-----------------CQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLII 171 (272)
T ss_dssp H-----------------HHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEE
T ss_pred H-----------------HHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEE
Confidence 0 011111122223356789999998643 223444333322 12234466
Q ss_pred Eeccchhhhhhc----CCCeeEEcCCCCH-HHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhcCC
Q 009306 325 ITTRDRQVLANC----GVDEVYQMEELVH-DDALRLFSRHAFGGDHPHESHTELACKTIKYARGV 384 (538)
Q Consensus 325 iTtR~~~~~~~~----~~~~~~~l~~L~~-~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~ 384 (538)
.||.....+... .....+.+++++. ++..+++.... ....+....+++.+.|.
T Consensus 172 ~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~-------~~~~~~~~~l~~~~~g~ 229 (272)
T 1d2n_A 172 GTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG-------NFKDKERTTIAQQVKGK 229 (272)
T ss_dssp EEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT-------CSCHHHHHHHHHHHTTS
T ss_pred EecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC-------CCCHHHHHHHHHHhcCC
Confidence 677766544431 1246789999988 66666665532 12356678888888883
No 41
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.68 E-value=2.2e-07 Score=91.61 Aligned_cols=180 Identities=14% Similarity=0.136 Sum_probs=100.3
Q ss_pred CCCce-eccch--hHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhhcCChHHHHHH
Q 009306 187 NEDLV-GVRLP--MKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEETCRLGDLRQQ 263 (538)
Q Consensus 187 ~~~~v-GR~~~--l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ 263 (538)
.++|+ |.... ...+..++.........+.|+|++|+||||||+.+++.....-...+++. .. .+...
T Consensus 10 f~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~-~~---------~~~~~ 79 (324)
T 1l8q_A 10 LENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSS-AD---------DFAQA 79 (324)
T ss_dssp SSSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEE-HH---------HHHHH
T ss_pred cccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE-HH---------HHHHH
Confidence 35666 54433 33444444433323456999999999999999999997654322234443 11 11222
Q ss_pred HHHHHhcCCCCCCchhhcHHHHHHHhcCCCeEEEEecCCChH----HHHHHhcCcCC-CCCCCEEEEeccch--------
Q 009306 264 LLSTLLNDGNVKNFLNTDLNFQSRRLTRKKVLIVFDDVDHPR----QIKILVGRLDL-FASGSRIIITTRDR-------- 330 (538)
Q Consensus 264 l~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~----~~~~l~~~l~~-~~~~~~iiiTtR~~-------- 330 (538)
+...+... ....+...+. ++.+|+|||++... ..+.+...+.. ...+..+|+|+...
T Consensus 80 ~~~~~~~~---------~~~~~~~~~~-~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~ 149 (324)
T 1l8q_A 80 MVEHLKKG---------TINEFRNMYK-SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVS 149 (324)
T ss_dssp HHHHHHHT---------CHHHHHHHHH-TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSC
T ss_pred HHHHHHcC---------cHHHHHHHhc-CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhh
Confidence 22222111 1111222222 46799999995432 22222222110 13456788887543
Q ss_pred -hhhhhcCCCeeEEcCCCCHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhcCCcHHHHH
Q 009306 331 -QVLANCGVDEVYQMEELVHDDALRLFSRHAFGGDHPHESHTELACKTIKYARGVPLALEV 390 (538)
Q Consensus 331 -~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~ 390 (538)
.+...+.....+++++ +.++..+++...+... ......+....+++.+ |++-.+..
T Consensus 150 ~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~--~~~l~~~~l~~l~~~~-g~~r~l~~ 206 (324)
T 1l8q_A 150 DRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEF--NLELRKEVIDYLLENT-KNVREIEG 206 (324)
T ss_dssp HHHHHHHHTSEEEECCC-CHHHHHHHHHHHHHHT--TCCCCHHHHHHHHHHC-SSHHHHHH
T ss_pred hHhhhcccCceEEEeCC-CHHHHHHHHHHHHHhc--CCCCCHHHHHHHHHhC-CCHHHHHH
Confidence 1122222335789999 9999999998877321 2234467788899999 88754433
No 42
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.66 E-value=9.3e-07 Score=86.97 Aligned_cols=181 Identities=12% Similarity=0.059 Sum_probs=103.2
Q ss_pred CCCceeccchhHHHHHhhhc----------CCCCceEEEEeccCCCchhHHHHHHHHhh-ccceeeEEEEeehhhhhhcC
Q 009306 187 NEDLVGVRLPMKEIESLLRT----------GSTNVYKLGIWGIGGIGKTTIAGAIFNKI-SRHFSGSYFARNVREAEETC 255 (538)
Q Consensus 187 ~~~~vGR~~~l~~l~~~L~~----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~-~~~f~~~~~~~~~~~~~~~~ 255 (538)
-.+++|.+..++.|.+.+.. .....+.+.|+|++|+|||+||+.++... ...| +.+. ......
T Consensus 11 ~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~---~~i~-~~~l~~-- 84 (322)
T 1xwi_A 11 WSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTF---FSIS-SSDLVS-- 84 (322)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEE---EEEE-CCSSCC--
T ss_pred HHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCCcE---EEEE-hHHHHh--
Confidence 35678888888777765521 11234679999999999999999999986 2222 1222 110000
Q ss_pred ChHHHHHHHHHHHhcCCCCCCchhhcHHHHH-HHhcCCCeEEEEecCCCh-------------HHHHHHhcCcCC---CC
Q 009306 256 RLGDLRQQLLSTLLNDGNVKNFLNTDLNFQS-RRLTRKKVLIVFDDVDHP-------------RQIKILVGRLDL---FA 318 (538)
Q Consensus 256 ~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~-~~l~~k~~LlVlDdv~~~-------------~~~~~l~~~l~~---~~ 318 (538)
... .........+. .....++.+|+||+++.. .....++..+.. ..
T Consensus 85 ----------------~~~-g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~ 147 (322)
T 1xwi_A 85 ----------------KWL-GESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDN 147 (322)
T ss_dssp ----------------SSC-CSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCC
T ss_pred ----------------hhh-hHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccC
Confidence 000 01111111121 222457889999999754 112233322221 12
Q ss_pred CCCEEEEeccchh-----hhhhcCCCeeEEcCCCCHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhcCC-cHHHHHHH
Q 009306 319 SGSRIIITTRDRQ-----VLANCGVDEVYQMEELVHDDALRLFSRHAFGGDHPHESHTELACKTIKYARGV-PLALEVLG 392 (538)
Q Consensus 319 ~~~~iiiTtR~~~-----~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~-PLal~~~~ 392 (538)
.+..||.||.... +.. .....+.++..+.++-.+++..+... .+..........+++.+.|. +-.|..+.
T Consensus 148 ~~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~--~~~~l~~~~l~~la~~t~G~sgadl~~l~ 223 (322)
T 1xwi_A 148 DGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGT--TQNSLTEADFRELGRKTDGYSGADISIIV 223 (322)
T ss_dssp TTEEEEEEESCTTTSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTT--CCBCCCHHHHHHHHHTCTTCCHHHHHHHH
T ss_pred CCEEEEEecCCcccCCHHHHh--hcCeEEEeCCcCHHHHHHHHHHHHhc--CCCCCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 3445555564332 122 34567889999999999999887722 22222356678889999887 44566555
Q ss_pred HH
Q 009306 393 RY 394 (538)
Q Consensus 393 ~~ 394 (538)
..
T Consensus 224 ~~ 225 (322)
T 1xwi_A 224 RD 225 (322)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 43
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.66 E-value=2.8e-07 Score=89.72 Aligned_cols=183 Identities=16% Similarity=0.115 Sum_probs=103.8
Q ss_pred CCCCCCceeccchhHHHHHhhhcC----------CCCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhh
Q 009306 184 HSENEDLVGVRLPMKEIESLLRTG----------STNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEE 253 (538)
Q Consensus 184 ~~~~~~~vGR~~~l~~l~~~L~~~----------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~ 253 (538)
+..-..++|.+..++.|.+.+... ....+.+.|+|++|+|||+||+.++......| +.+. ......
T Consensus 17 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~~---~~i~-~~~l~~ 92 (297)
T 3b9p_A 17 KVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSATF---LNIS-AASLTS 92 (297)
T ss_dssp CCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCEE---EEEE-STTTSS
T ss_pred CCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCe---EEee-HHHHhh
Confidence 334478999999999998876320 11245789999999999999999998764332 1222 111100
Q ss_pred cCChHHHHHHHHHHHhcCCCCCCchhhcHH-HHHHHhcCCCeEEEEecCCCh-------------HHHHHHhcCcC---C
Q 009306 254 TCRLGDLRQQLLSTLLNDGNVKNFLNTDLN-FQSRRLTRKKVLIVFDDVDHP-------------RQIKILVGRLD---L 316 (538)
Q Consensus 254 ~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~-~l~~~l~~k~~LlVlDdv~~~-------------~~~~~l~~~l~---~ 316 (538)
.. ......... .+......++.+|+||+++.. .....++..+. .
T Consensus 93 ~~-------------------~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 153 (297)
T 3b9p_A 93 KY-------------------VGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPG 153 (297)
T ss_dssp SS-------------------CSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC-
T ss_pred cc-------------------cchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccc
Confidence 00 000111111 111222457789999999543 11122222111 1
Q ss_pred C--CCCCEEEEeccchh-----hhhhcCCCeeEEcCCCCHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhcCCcH-HH
Q 009306 317 F--ASGSRIIITTRDRQ-----VLANCGVDEVYQMEELVHDDALRLFSRHAFGGDHPHESHTELACKTIKYARGVPL-AL 388 (538)
Q Consensus 317 ~--~~~~~iiiTtR~~~-----~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PL-al 388 (538)
. +.+..||.||.... +.. .....+.++..+.++...++...+... ...........+++.+.|++- .|
T Consensus 154 ~~~~~~v~vi~~tn~~~~l~~~l~~--R~~~~i~~~~p~~~~r~~il~~~~~~~--~~~~~~~~~~~la~~~~g~~~~~l 229 (297)
T 3b9p_A 154 NPDGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQ--GSPLDTEALRRLAKITDGYSGSDL 229 (297)
T ss_dssp -----CEEEEEEESCGGGBCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHGGG--SCCSCHHHHHHHHHHTTTCCHHHH
T ss_pred cCCCCcEEEEeecCChhhCCHHHHh--hCCeEEEeCCcCHHHHHHHHHHHHHhc--CCCCCHHHHHHHHHHcCCCCHHHH
Confidence 1 12345666665432 222 234677888889988888887766221 122335667889999999875 56
Q ss_pred HHHHH
Q 009306 389 EVLGR 393 (538)
Q Consensus 389 ~~~~~ 393 (538)
..+..
T Consensus 230 ~~l~~ 234 (297)
T 3b9p_A 230 TALAK 234 (297)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55544
No 44
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.65 E-value=1e-06 Score=87.91 Aligned_cols=181 Identities=13% Similarity=0.100 Sum_probs=104.1
Q ss_pred CCCCceeccchhHHHHHhhhc----------CCCCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhhcC
Q 009306 186 ENEDLVGVRLPMKEIESLLRT----------GSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEETC 255 (538)
Q Consensus 186 ~~~~~vGR~~~l~~l~~~L~~----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~ 255 (538)
.-.+++|.+..++.|.+.+.. .....+.+.|+|++|+|||+||+.++......| +.+. ....
T Consensus 49 ~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~---~~v~-~~~l---- 120 (355)
T 2qp9_X 49 KWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTF---FSVS-SSDL---- 120 (355)
T ss_dssp CGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEE---EEEE-HHHH----
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCE---EEee-HHHH----
Confidence 346789999999988876621 112234589999999999999999999874332 1222 1111
Q ss_pred ChHHHHHHHHHHHhcCCCCCCchhhcHHHH-HHHhcCCCeEEEEecCCChH-------------HHHHHhcCcC---CCC
Q 009306 256 RLGDLRQQLLSTLLNDGNVKNFLNTDLNFQ-SRRLTRKKVLIVFDDVDHPR-------------QIKILVGRLD---LFA 318 (538)
Q Consensus 256 ~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l-~~~l~~k~~LlVlDdv~~~~-------------~~~~l~~~l~---~~~ 318 (538)
..... .........+ ......++.+|+||+++... ....++..+. ...
T Consensus 121 ---------~~~~~------g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~ 185 (355)
T 2qp9_X 121 ---------VSKWM------GESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDS 185 (355)
T ss_dssp ---------HSCC---------CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---
T ss_pred ---------hhhhc------chHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccC
Confidence 00000 0011111111 12224578999999997431 1233332221 112
Q ss_pred CCCEEEEeccchh-----hhhhcCCCeeEEcCCCCHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhcCC-cHHHHHHH
Q 009306 319 SGSRIIITTRDRQ-----VLANCGVDEVYQMEELVHDDALRLFSRHAFGGDHPHESHTELACKTIKYARGV-PLALEVLG 392 (538)
Q Consensus 319 ~~~~iiiTtR~~~-----~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~-PLal~~~~ 392 (538)
.+..||.||.... +.. .....+.++..+.++-.+++..++... +..........+++.+.|. +-.|..+.
T Consensus 186 ~~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~--~~~~~~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 186 QGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDT--PSVLTKEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp CCEEEEEEESCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTS--CBCCCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CCeEEEeecCCcccCCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhC--CCCCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 3455565665432 222 345678899999999999998887322 2222355678889999884 54565554
Q ss_pred H
Q 009306 393 R 393 (538)
Q Consensus 393 ~ 393 (538)
.
T Consensus 262 ~ 262 (355)
T 2qp9_X 262 K 262 (355)
T ss_dssp H
T ss_pred H
Confidence 4
No 45
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.65 E-value=1.9e-07 Score=95.86 Aligned_cols=180 Identities=15% Similarity=0.194 Sum_probs=107.2
Q ss_pred CCCCCceeccchh---HHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhhcCChHHHH
Q 009306 185 SENEDLVGVRLPM---KEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEETCRLGDLR 261 (538)
Q Consensus 185 ~~~~~~vGR~~~l---~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~ 261 (538)
.....++|.+..+ ..|...+..+ ..+.+.|+|++|+||||||+.+++.....|.. +.. ...+...+
T Consensus 23 ~~l~~ivGq~~~~~~~~~L~~~i~~~--~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~---l~a-----~~~~~~~i- 91 (447)
T 3pvs_A 23 ENLAQYIGQQHLLAAGKPLPRAIEAG--HLHSMILWGPPGTGKTTLAEVIARYANADVER---ISA-----VTSGVKEI- 91 (447)
T ss_dssp CSTTTCCSCHHHHSTTSHHHHHHHHT--CCCEEEEECSTTSSHHHHHHHHHHHTTCEEEE---EET-----TTCCHHHH-
T ss_pred CCHHHhCCcHHHHhchHHHHHHHHcC--CCcEEEEECCCCCcHHHHHHHHHHHhCCCeEE---EEe-----ccCCHHHH-
Confidence 3457799999888 6777777654 34679999999999999999999987554321 111 11122221
Q ss_pred HHHHHHHhcCCCCCCchhhcHHHHHHHhcCCCeEEEEecCCCh--HHHHHHhcCcCCCCCCCEEEE-eccchh--hh-hh
Q 009306 262 QQLLSTLLNDGNVKNFLNTDLNFQSRRLTRKKVLIVFDDVDHP--RQIKILVGRLDLFASGSRIII-TTRDRQ--VL-AN 335 (538)
Q Consensus 262 ~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~iii-TtR~~~--~~-~~ 335 (538)
+.++... .......++.+|+||+++.. .+.+.++..+.. ....+|. ||.+.. +. ..
T Consensus 92 r~~~~~a----------------~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~--~~v~lI~att~n~~~~l~~aL 153 (447)
T 3pvs_A 92 REAIERA----------------RQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED--GTITFIGATTENPSFELNSAL 153 (447)
T ss_dssp HHHHHHH----------------HHHHHTTCCEEEEEETTTCC------CCHHHHHT--TSCEEEEEESSCGGGSSCHHH
T ss_pred HHHHHHH----------------HHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhc--CceEEEecCCCCcccccCHHH
Confidence 1111110 00111357789999999754 233334433331 2344444 444432 11 11
Q ss_pred cCCCeeEEcCCCCHHHHHHHHHhhhcCCC-----CCCCchHHHHHHHHHHhcCCcHHHHHHHH
Q 009306 336 CGVDEVYQMEELVHDDALRLFSRHAFGGD-----HPHESHTELACKTIKYARGVPLALEVLGR 393 (538)
Q Consensus 336 ~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~-----~~~~~~~~~~~~i~~~~~G~PLal~~~~~ 393 (538)
.....++.+++++.++..+++...+.... .......+....+++.++|++..+..+..
T Consensus 154 ~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~Le 216 (447)
T 3pvs_A 154 LSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLE 216 (447)
T ss_dssp HTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHHH
T ss_pred hCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHHH
Confidence 12345889999999999999988763311 22235577888999999999876554443
No 46
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.64 E-value=5.3e-07 Score=91.30 Aligned_cols=187 Identities=13% Similarity=0.085 Sum_probs=103.7
Q ss_pred CCCCCCceeccchhHHHHHhhhc----------CCCCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhh
Q 009306 184 HSENEDLVGVRLPMKEIESLLRT----------GSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEE 253 (538)
Q Consensus 184 ~~~~~~~vGR~~~l~~l~~~L~~----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~ 253 (538)
+..-..++|.+..++.|...+.. .....+.+.|+|++|+|||+||+.++.+....| +.+. ......
T Consensus 111 ~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~~~---~~v~-~~~l~~ 186 (389)
T 3vfd_A 111 AVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATF---FNIS-AASLTS 186 (389)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTCEE---EEEC-SCCC--
T ss_pred CCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcCcE---EEee-HHHhhc
Confidence 33457899999999999887621 011245799999999999999999998754332 2222 111000
Q ss_pred cCChHHHHHHHHHHHhcCCCCCCchhhcHHHHHHHhcCCCeEEEEecCCCh-------------HHHHHHhcCc----CC
Q 009306 254 TCRLGDLRQQLLSTLLNDGNVKNFLNTDLNFQSRRLTRKKVLIVFDDVDHP-------------RQIKILVGRL----DL 316 (538)
Q Consensus 254 ~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-------------~~~~~l~~~l----~~ 316 (538)
.. .+ .........+.......+.+|+||+++.. .....++..+ ..
T Consensus 187 -----~~--------~g-----~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 248 (389)
T 3vfd_A 187 -----KY--------VG-----EGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSA 248 (389)
T ss_dssp -----------------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC--
T ss_pred -----cc--------cc-----hHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhccccc
Confidence 00 00 00011111111222346689999999643 1112222111 11
Q ss_pred CCCCCEEEEeccchhhh-hh--cCCCeeEEcCCCCHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhcCCcH-HHHHHH
Q 009306 317 FASGSRIIITTRDRQVL-AN--CGVDEVYQMEELVHDDALRLFSRHAFGGDHPHESHTELACKTIKYARGVPL-ALEVLG 392 (538)
Q Consensus 317 ~~~~~~iiiTtR~~~~~-~~--~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PL-al~~~~ 392 (538)
......||.||.....+ .. ......+.++..+.++..+++...+.. .......+....+++.+.|..- .|..+.
T Consensus 249 ~~~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~--~~~~l~~~~~~~la~~~~g~~~~~l~~L~ 326 (389)
T 3vfd_A 249 GDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCK--QGSPLTQKELAQLARMTDGYSGSDLTALA 326 (389)
T ss_dssp ---CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTT--SCCCSCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CCCCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHh--cCCCCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 12334555566543221 11 123457889999999999999887732 2223345677889999988654 665554
Q ss_pred HH
Q 009306 393 RY 394 (538)
Q Consensus 393 ~~ 394 (538)
..
T Consensus 327 ~~ 328 (389)
T 3vfd_A 327 KD 328 (389)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 47
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.64 E-value=5.6e-07 Score=85.68 Aligned_cols=184 Identities=15% Similarity=0.142 Sum_probs=99.8
Q ss_pred CCCceeccchhHHHHHhhhc----------CCCCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhhcCC
Q 009306 187 NEDLVGVRLPMKEIESLLRT----------GSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEETCR 256 (538)
Q Consensus 187 ~~~~vGR~~~l~~l~~~L~~----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 256 (538)
-.+++|.+..++.|.+++.. +....+.+.|+|++|+|||++|+.+++.....| +.+. .........
T Consensus 5 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~---~~~~-~~~~~~~~~ 80 (262)
T 2qz4_A 5 FKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPF---LAMA-GAEFVEVIG 80 (262)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCE---EEEE-TTTTSSSST
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCE---EEec-hHHHHhhcc
Confidence 35688888888777665431 112345689999999999999999998765432 2222 111100000
Q ss_pred hHHHHHHHHHHHhcCCCCCCchhhcHHHHHHHhcCCCeEEEEecCCCh-----------------HHHHHHhcCcCCC--
Q 009306 257 LGDLRQQLLSTLLNDGNVKNFLNTDLNFQSRRLTRKKVLIVFDDVDHP-----------------RQIKILVGRLDLF-- 317 (538)
Q Consensus 257 ~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-----------------~~~~~l~~~l~~~-- 317 (538)
..........+.......+.+|+|||++.. ..+..++..+...
T Consensus 81 ------------------~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~ 142 (262)
T 2qz4_A 81 ------------------GLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGT 142 (262)
T ss_dssp ------------------THHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCT
T ss_pred ------------------ChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCC
Confidence 000011111222223356789999999754 1122333222211
Q ss_pred CCCCEEEEeccchhhhh-hc----CCCeeEEcCCCCHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhcCCcH-HHHHH
Q 009306 318 ASGSRIIITTRDRQVLA-NC----GVDEVYQMEELVHDDALRLFSRHAFGGDHPHESHTELACKTIKYARGVPL-ALEVL 391 (538)
Q Consensus 318 ~~~~~iiiTtR~~~~~~-~~----~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PL-al~~~ 391 (538)
..+..+|.||.....+. .+ .....+.++..+.++-.+++...+.... ...........+++.+.|++- .|..+
T Consensus 143 ~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~-~~~~~~~~~~~l~~~~~g~~~~~l~~l 221 (262)
T 2qz4_A 143 TDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLK-LTQSSTFYSQRLAELTPGFSGADIANI 221 (262)
T ss_dssp TCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTT-CCBTHHHHHHHHHHTCTTCCHHHHHHH
T ss_pred CCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCC-CCcchhhHHHHHHHHCCCCCHHHHHHH
Confidence 23455666665443221 11 2346788999999999999988762221 121222234678888888754 55544
Q ss_pred HH
Q 009306 392 GR 393 (538)
Q Consensus 392 ~~ 393 (538)
..
T Consensus 222 ~~ 223 (262)
T 2qz4_A 222 CN 223 (262)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 48
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.61 E-value=2.9e-06 Score=83.95 Aligned_cols=259 Identities=15% Similarity=0.157 Sum_probs=139.3
Q ss_pred CCCCceeccchhHHHHHhhhcC---CCCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhhcCChHHHHH
Q 009306 186 ENEDLVGVRLPMKEIESLLRTG---STNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEETCRLGDLRQ 262 (538)
Q Consensus 186 ~~~~~vGR~~~l~~l~~~L~~~---~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~ 262 (538)
.-..++|.+..++.+...+..+ ......++|+|++|+||||||+.++..+...+. ... ... ......+ .
T Consensus 23 ~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~---~~s--g~~--~~~~~~l-~ 94 (334)
T 1in4_A 23 SLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIH---VTS--GPV--LVKQGDM-A 94 (334)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEE---EEE--TTT--CCSHHHH-H
T ss_pred cHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEE---EEe--chH--hcCHHHH-H
Confidence 3466889888888887766532 223356899999999999999999998754322 111 000 0000010 0
Q ss_pred HHHHHHhcCCCCCCchhhcHHHHHHHhcCCCeEEEEecCCCh--HHHHHHhcCcCCC--------C----------CCCE
Q 009306 263 QLLSTLLNDGNVKNFLNTDLNFQSRRLTRKKVLIVFDDVDHP--RQIKILVGRLDLF--------A----------SGSR 322 (538)
Q Consensus 263 ~l~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~--------~----------~~~~ 322 (538)
. +...+ .++.++++|+++.. ...+.+...+... + +...
T Consensus 95 ~---------------------~~~~~-~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~ 152 (334)
T 1in4_A 95 A---------------------ILTSL-ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFT 152 (334)
T ss_dssp H---------------------HHHHC-CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCE
T ss_pred H---------------------HHHHc-cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeE
Confidence 0 01111 23457788988542 2223332211100 0 1122
Q ss_pred EE-Eeccchhhhhhc--CCCeeEEcCCCCHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhcCCcHHHHHHHHHhc---
Q 009306 323 II-ITTRDRQVLANC--GVDEVYQMEELVHDDALRLFSRHAFGGDHPHESHTELACKTIKYARGVPLALEVLGRYLY--- 396 (538)
Q Consensus 323 ii-iTtR~~~~~~~~--~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~L~--- 396 (538)
++ .|++...+.... .......+++++.++..+++.+.+.. .......+.+..+++.+.|.|-.+..+...+.
T Consensus 153 li~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~--~~~~~~~~~~~~ia~~~~G~~R~a~~ll~~~~~~a 230 (334)
T 1in4_A 153 LVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASL--MDVEIEDAAAEMIAKRSRGTPRIAIRLTKRVRDML 230 (334)
T ss_dssp EEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHH--TTCCBCHHHHHHHHHTSTTCHHHHHHHHHHHHHHH
T ss_pred EEEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHH--cCCCcCHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Confidence 22 233332221111 12346789999999999999887621 12235567789999999999975544433221
Q ss_pred ---CC---CHHHHHHHHHHhhcCCCCcHHHHHHHhHhCCCHHhHHHhhccccc--cCCCCHHHHHHHHHhCCCChHHHHH
Q 009306 397 ---GK---RREVWENAKSKWETAPPKGIQDALKISYDGLDDKEQNIFLDIACF--FIDEDRDTATKFLDDCEFFATSAIE 468 (538)
Q Consensus 397 ---~~---~~~~~~~~l~~l~~~~~~~v~~~l~~s~~~L~~~~k~~l~~la~f--~~~~~~~~l~~l~~~~~~~~~~~l~ 468 (538)
+. +.+..+.++..+. ..-..++...+.++..++-. ..+...+.+....+.+....+...+
T Consensus 231 ~~~~~~~It~~~v~~al~~~~------------~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~t~~~~~~ 298 (334)
T 1in4_A 231 TVVKADRINTDIVLKTMEVLN------------IDDEGLDEFDRKILKTIIEIYRGGPVGLNALAASLGVEADTLSEVYE 298 (334)
T ss_dssp HHHTCSSBCHHHHHHHHHHHT------------CCTTCCCHHHHHHHHHHHHHSTTCCBCHHHHHHHHTSCHHHHHHHTH
T ss_pred HHcCCCCcCHHHHHHHHHHhC------------CCcCCCCHHHHHHHHHHHHHhCCCcchHHHHHHHhCCCcchHHHHHH
Confidence 11 1222222222211 11134566666666554433 2345666776666443222233333
Q ss_pred -HHhhCCceeEecCCcEEecH
Q 009306 469 -VLVDKHLITISVLNKIEMHY 488 (538)
Q Consensus 469 -~L~~~~Li~~~~~~~~~~H~ 488 (538)
.|.+.|+|+....|++-...
T Consensus 299 ~~l~~~g~i~~~~~gr~~~~~ 319 (334)
T 1in4_A 299 PYLLQAGFLARTPRGRIVTEK 319 (334)
T ss_dssp HHHHHTTSEEEETTEEEECHH
T ss_pred HHHHHcCCeecccccHHhhHH
Confidence 79999999998888765443
No 49
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.60 E-value=1.5e-07 Score=92.85 Aligned_cols=175 Identities=15% Similarity=0.184 Sum_probs=103.7
Q ss_pred CCCCCCceeccchhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhhcCChHHHHHH
Q 009306 184 HSENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEETCRLGDLRQQ 263 (538)
Q Consensus 184 ~~~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ 263 (538)
|...+.++|++..++.|..++..+. ...++.++|++|+|||++|+.+++.+... .+.+. .. ..... ..+.
T Consensus 22 P~~~~~ivg~~~~~~~l~~~l~~~~-~~~~~L~~G~~G~GKT~la~~la~~l~~~---~~~i~-~~----~~~~~-~i~~ 91 (324)
T 3u61_B 22 PSTIDECILPAFDKETFKSITSKGK-IPHIILHSPSPGTGKTTVAKALCHDVNAD---MMFVN-GS----DCKID-FVRG 91 (324)
T ss_dssp CCSTTTSCCCHHHHHHHHHHHHTTC-CCSEEEECSSTTSSHHHHHHHHHHHTTEE---EEEEE-TT----TCCHH-HHHT
T ss_pred CCCHHHHhCcHHHHHHHHHHHHcCC-CCeEEEeeCcCCCCHHHHHHHHHHHhCCC---EEEEc-cc----ccCHH-HHHH
Confidence 3445789999999999999998542 34568888999999999999999887422 22332 11 11221 2222
Q ss_pred HHHHHhcCCCCCCchhhcHHHHHHHhcCCCeEEEEecCCChH---HHHHHhcCcCCCCCCCEEEEeccchhh-----hhh
Q 009306 264 LLSTLLNDGNVKNFLNTDLNFQSRRLTRKKVLIVFDDVDHPR---QIKILVGRLDLFASGSRIIITTRDRQV-----LAN 335 (538)
Q Consensus 264 l~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~---~~~~l~~~l~~~~~~~~iiiTtR~~~~-----~~~ 335 (538)
.+........ ..+++.+|+|||++... ....+...+.....+.++|+||....- ...
T Consensus 92 ~~~~~~~~~~---------------~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR 156 (324)
T 3u61_B 92 PLTNFASAAS---------------FDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSR 156 (324)
T ss_dssp HHHHHHHBCC---------------CSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHH
T ss_pred HHHHHHhhcc---------------cCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhh
Confidence 2221111100 12367899999998653 444444433322356788888765431 222
Q ss_pred cCCCeeEEcCCCCHHHHHHHH-------HhhhcCCCCCCCchH-HHHHHHHHHhcCCcHHH
Q 009306 336 CGVDEVYQMEELVHDDALRLF-------SRHAFGGDHPHESHT-ELACKTIKYARGVPLAL 388 (538)
Q Consensus 336 ~~~~~~~~l~~L~~~ea~~Lf-------~~~~~~~~~~~~~~~-~~~~~i~~~~~G~PLal 388 (538)
...+++++++.++-.+++ ...+... ...... +....+++.++|++..+
T Consensus 157 ---~~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~--~~~~~~~~~~~~l~~~~~gd~R~a 212 (324)
T 3u61_B 157 ---CRVITFGQPTDEDKIEMMKQMIRRLTEICKHE--GIAIADMKVVAALVKKNFPDFRKT 212 (324)
T ss_dssp ---SEEEECCCCCHHHHHHHHHHHHHHHHHHHHHH--TCCBSCHHHHHHHHHHTCSCTTHH
T ss_pred ---CcEEEeCCCCHHHHHHHHHHHHHHHHHHHHHc--CCCCCcHHHHHHHHHhCCCCHHHH
Confidence 257899999988843332 2222111 112223 67788888898887643
No 50
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.59 E-value=3.3e-07 Score=89.66 Aligned_cols=167 Identities=12% Similarity=0.111 Sum_probs=94.1
Q ss_pred CceeccchhHHHHHhhhc-------------CCCCceEEEEeccCCCchhHHHHHHHHhhcccee----eEEEEeehhhh
Q 009306 189 DLVGVRLPMKEIESLLRT-------------GSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFS----GSYFARNVREA 251 (538)
Q Consensus 189 ~~vGR~~~l~~l~~~L~~-------------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~----~~~~~~~~~~~ 251 (538)
.++|.+..++.|.+++.. .......+.|+|++|+|||+||+.+++.+..... ..+.+. ....
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~-~~~l 110 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVT-RDDL 110 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEEC-GGGT
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEc-HHHh
Confidence 478888888877765431 1233456999999999999999999987643211 122222 1110
Q ss_pred hhcCChHHHHHHHHHHHhcCCCCCCchhhcHHHHHHHhcCCCeEEEEecCC-----------ChHHHHHHhcCcCCCCCC
Q 009306 252 EETCRLGDLRQQLLSTLLNDGNVKNFLNTDLNFQSRRLTRKKVLIVFDDVD-----------HPRQIKILVGRLDLFASG 320 (538)
Q Consensus 252 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~-----------~~~~~~~l~~~l~~~~~~ 320 (538)
.. . ............+.. .++.+|+||+++ +......+...+.....+
T Consensus 111 ~~-----------------~-~~g~~~~~~~~~~~~---~~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~ 169 (309)
T 3syl_A 111 VG-----------------Q-YIGHTAPKTKEVLKR---AMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDD 169 (309)
T ss_dssp CC-----------------S-STTCHHHHHHHHHHH---HTTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTT
T ss_pred hh-----------------h-cccccHHHHHHHHHh---cCCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCC
Confidence 00 0 000000111111111 145699999997 334455555544443456
Q ss_pred CEEEEeccchhh----------hhhcCCCeeEEcCCCCHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHh
Q 009306 321 SRIIITTRDRQV----------LANCGVDEVYQMEELVHDDALRLFSRHAFGGDHPHESHTELACKTIKYA 381 (538)
Q Consensus 321 ~~iiiTtR~~~~----------~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~ 381 (538)
..+|.||..... ... ....+.+++++.++..+++...+... ......+....+++.+
T Consensus 170 ~~~i~~~~~~~~~~~~~~~~~l~~R--~~~~i~~~~~~~~~~~~il~~~l~~~--~~~~~~~~~~~l~~~~ 236 (309)
T 3syl_A 170 LVVILAGYADRMENFFQSNPGFRSR--IAHHIEFPDYSDEELFEIAGHMLDDQ--NYQMTPEAETALRAYI 236 (309)
T ss_dssp CEEEEEECHHHHHHHHHHSTTHHHH--EEEEEEECCCCHHHHHHHHHHHHHHT--TCEECHHHHHHHHHHH
T ss_pred EEEEEeCChHHHHHHHhhCHHHHHh--CCeEEEcCCcCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHH
Confidence 777777754321 111 23678999999999999998876221 1223344455555543
No 51
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.59 E-value=1.3e-06 Score=89.91 Aligned_cols=186 Identities=14% Similarity=0.149 Sum_probs=107.0
Q ss_pred CCCCCceeccchhHHHHHhhhc----------CCCCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhhc
Q 009306 185 SENEDLVGVRLPMKEIESLLRT----------GSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEET 254 (538)
Q Consensus 185 ~~~~~~vGR~~~l~~l~~~L~~----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~ 254 (538)
..-.+++|.+..++.|.+.+.. .....+.+.|+|++|+|||+||+.++...... .++..+..
T Consensus 131 ~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~---~~~~v~~~----- 202 (444)
T 2zan_A 131 VKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNS---TFFSISSS----- 202 (444)
T ss_dssp CCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCSS---EEEEECCC-----
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCCC---CEEEEeHH-----
Confidence 3446799999999888876521 11234679999999999999999999986211 11211111
Q ss_pred CChHHHHHHHHHHHhcCCCCCCchhhcHHHHHHHhcCCCeEEEEecCCCh-------------HHHHHHhcCcCCC---C
Q 009306 255 CRLGDLRQQLLSTLLNDGNVKNFLNTDLNFQSRRLTRKKVLIVFDDVDHP-------------RQIKILVGRLDLF---A 318 (538)
Q Consensus 255 ~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-------------~~~~~l~~~l~~~---~ 318 (538)
. +. ....+. ....+.. .+......++.+|+||+++.. .....++..+... .
T Consensus 203 -~---l~----~~~~g~--~~~~~~~---~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~ 269 (444)
T 2zan_A 203 -D---LV----SKWLGE--SEKLVKN---LFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDN 269 (444)
T ss_dssp -------------------CCCTHHH---HHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCC
T ss_pred -H---HH----hhhcch--HHHHHHH---HHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCC
Confidence 0 10 010010 0111111 122222457889999999754 2244455544332 3
Q ss_pred CCCEEEEeccchhhhh-h--cCCCeeEEcCCCCHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhcCC-cHHHHHHHH
Q 009306 319 SGSRIIITTRDRQVLA-N--CGVDEVYQMEELVHDDALRLFSRHAFGGDHPHESHTELACKTIKYARGV-PLALEVLGR 393 (538)
Q Consensus 319 ~~~~iiiTtR~~~~~~-~--~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~-PLal~~~~~ 393 (538)
.+..||.||.....+. . -.....+.++..+.++-.+++..++.. .+..........+++.+.|. +-.|..+..
T Consensus 270 ~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~--~~~~l~~~~l~~la~~t~G~sgadl~~l~~ 346 (444)
T 2zan_A 270 DGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGS--TQNSLTEADFQELGRKTDGYSGADISIIVR 346 (444)
T ss_dssp SSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTT--SCEECCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CCEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhc--CCCCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 4556666665442211 1 134467889999999999999887722 22222355677888999884 445555544
No 52
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.48 E-value=5.9e-06 Score=80.41 Aligned_cols=176 Identities=17% Similarity=0.178 Sum_probs=100.0
Q ss_pred CCCceeccchhHHHHHhhhc-----------CCCCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhhcC
Q 009306 187 NEDLVGVRLPMKEIESLLRT-----------GSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEETC 255 (538)
Q Consensus 187 ~~~~vGR~~~l~~l~~~L~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~ 255 (538)
-.+++|.+..+++|.+.+.. +....+.+.|+|++|+|||+||+.++......| +.+. .
T Consensus 14 ~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~---i~v~-~------- 82 (301)
T 3cf0_A 14 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANF---ISIK-G------- 82 (301)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEE---EEEC-H-------
T ss_pred HHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCE---EEEE-h-------
Confidence 35688999888888876542 223456799999999999999999998865322 2222 1
Q ss_pred ChHHHHHHHHHHHhcCCCCCCchhhcHHHHHHHhcCCCeEEEEecCCChH----------------HHHHHhcCcCC--C
Q 009306 256 RLGDLRQQLLSTLLNDGNVKNFLNTDLNFQSRRLTRKKVLIVFDDVDHPR----------------QIKILVGRLDL--F 317 (538)
Q Consensus 256 ~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~----------------~~~~l~~~l~~--~ 317 (538)
..+. ....+.. .......+.......+.+|+||+++... ....++..+.. .
T Consensus 83 --~~l~----~~~~g~~-----~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~ 151 (301)
T 3cf0_A 83 --PELL----TMWFGES-----EANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMST 151 (301)
T ss_dssp --HHHH----HHHHTTC-----TTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCT
T ss_pred --HHHH----hhhcCch-----HHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccC
Confidence 1111 1111111 1111222223334578999999997431 12333322211 1
Q ss_pred CCCCEEEEeccchhhhh-h-c---CCCeeEEcCCCCHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhcCCcHH
Q 009306 318 ASGSRIIITTRDRQVLA-N-C---GVDEVYQMEELVHDDALRLFSRHAFGGDHPHESHTELACKTIKYARGVPLA 387 (538)
Q Consensus 318 ~~~~~iiiTtR~~~~~~-~-~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLa 387 (538)
..+..||.||.....+. . . .....+.++..+.++-.+++............. ....++..+.|+|-+
T Consensus 152 ~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~---~~~~la~~~~g~sg~ 223 (301)
T 3cf0_A 152 KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDV---DLEFLAKMTNGFSGA 223 (301)
T ss_dssp TSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSC---CHHHHHHTCSSCCHH
T ss_pred CCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccc---hHHHHHHHcCCCCHH
Confidence 23456676775543221 1 1 244678999999999999988776322211111 134556667777644
No 53
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.48 E-value=6.5e-07 Score=80.13 Aligned_cols=50 Identities=20% Similarity=0.280 Sum_probs=41.6
Q ss_pred CCCCceeccchhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhcc
Q 009306 186 ENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISR 237 (538)
Q Consensus 186 ~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 237 (538)
....++||+.+++.+.+.+... ..+.+.|+|++|+|||+||+.+++.+..
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~~~--~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 20 KLDPVIGRDTEIRRAIQILSRR--TKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp CSCCCCSCHHHHHHHHHHHTSS--SSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred ccchhhcchHHHHHHHHHHhCC--CCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 3467999999999999988753 3456799999999999999999987643
No 54
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.46 E-value=3.7e-06 Score=83.16 Aligned_cols=178 Identities=12% Similarity=0.104 Sum_probs=99.8
Q ss_pred chhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhhcCChHHHHHHHHHH-------
Q 009306 195 LPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEETCRLGDLRQQLLST------- 267 (538)
Q Consensus 195 ~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~------- 267 (538)
...+.+...+..+ .-.+.+.++|++|+|||++|+.++..+....... ... ...... ...+...
T Consensus 9 ~~~~~l~~~i~~~-~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~-~~~-------c~~c~~-c~~~~~~~~~d~~~ 78 (334)
T 1a5t_A 9 PDFEKLVASYQAG-RGHHALLIQALPGMGDDALIYALSRYLLCQQPQG-HKS-------CGHCRG-CQLMQAGTHPDYYT 78 (334)
T ss_dssp HHHHHHHHHHHTT-CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBT-TBC-------CSCSHH-HHHHHHTCCTTEEE
T ss_pred HHHHHHHHHHHcC-CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCC-CCC-------CCCCHH-HHHHhcCCCCCEEE
Confidence 3445566655533 2345689999999999999999998764322100 000 000000 0000000
Q ss_pred HhcCC-CCCCchhhcHHHHHHHh-----cCCCeEEEEecCCCh--HHHHHHhcCcCCCCCCCEEEEeccchh-hhhhc-C
Q 009306 268 LLNDG-NVKNFLNTDLNFQSRRL-----TRKKVLIVFDDVDHP--RQIKILVGRLDLFASGSRIIITTRDRQ-VLANC-G 337 (538)
Q Consensus 268 l~~~~-~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~iiiTtR~~~-~~~~~-~ 337 (538)
+.... ......++... +.+.+ .+++-++|||+++.. .....++..+....++..+|++|.+.. +.+.+ .
T Consensus 79 ~~~~~~~~~~~i~~ir~-l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~S 157 (334)
T 1a5t_A 79 LAPEKGKNTLGVDAVRE-VTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRS 157 (334)
T ss_dssp ECCCTTCSSBCHHHHHH-HHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHT
T ss_pred EeccccCCCCCHHHHHH-HHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHhh
Confidence 00000 00011111111 22222 245679999999753 445666666655455677777766542 32222 2
Q ss_pred CCeeEEcCCCCHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhcCCcHHHHH
Q 009306 338 VDEVYQMEELVHDDALRLFSRHAFGGDHPHESHTELACKTIKYARGVPLALEV 390 (538)
Q Consensus 338 ~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~ 390 (538)
....+++++++.++..+.+.... ....+.+..+++.++|.|..+..
T Consensus 158 Rc~~~~~~~~~~~~~~~~L~~~~-------~~~~~~~~~l~~~s~G~~r~a~~ 203 (334)
T 1a5t_A 158 RCRLHYLAPPPEQYAVTWLSREV-------TMSQDALLAALRLSAGSPGAALA 203 (334)
T ss_dssp TSEEEECCCCCHHHHHHHHHHHC-------CCCHHHHHHHHHHTTTCHHHHHH
T ss_pred cceeeeCCCCCHHHHHHHHHHhc-------CCCHHHHHHHHHHcCCCHHHHHH
Confidence 34689999999999999998775 22356678899999999965543
No 55
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.41 E-value=1.3e-06 Score=86.85 Aligned_cols=183 Identities=13% Similarity=0.182 Sum_probs=104.8
Q ss_pred CCCCCCceeccchhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhccc-eeeEEEEeehhhhhhcCChHHHHH
Q 009306 184 HSENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRH-FSGSYFARNVREAEETCRLGDLRQ 262 (538)
Q Consensus 184 ~~~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~l~~ 262 (538)
|..-..++|.+..++.|...+..+. .+.+.++|++|+||||+|+.++..+... +...+.-.+ .....+...+ +
T Consensus 21 p~~~~~~~g~~~~~~~L~~~i~~g~--~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~---~~~~~~~~~i-r 94 (340)
T 1sxj_C 21 PETLDEVYGQNEVITTVRKFVDEGK--LPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELN---ASDDRGIDVV-R 94 (340)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHTTC--CCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEEC---TTSCCSHHHH-H
T ss_pred CCcHHHhcCcHHHHHHHHHHHhcCC--CceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEc---CcccccHHHH-H
Confidence 3344668899988998888887542 2238999999999999999999875432 111111111 1111112111 1
Q ss_pred HHHHHHhcCCCCCCchhhcHHHHHHHhcCCCeEEEEecCCCh--HHHHHHhcCcCCCCCCCEEEEeccchh-hhhhc-CC
Q 009306 263 QLLSTLLNDGNVKNFLNTDLNFQSRRLTRKKVLIVFDDVDHP--RQIKILVGRLDLFASGSRIIITTRDRQ-VLANC-GV 338 (538)
Q Consensus 263 ~l~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~iiiTtR~~~-~~~~~-~~ 338 (538)
.....+..... ...+.+-++|+|+++.. .....+...+.......++|++|.... +.+.+ ..
T Consensus 95 ~~i~~~~~~~~--------------~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR 160 (340)
T 1sxj_C 95 NQIKDFASTRQ--------------IFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQ 160 (340)
T ss_dssp THHHHHHHBCC--------------SSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTT
T ss_pred HHHHHHHhhcc--------------cCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhh
Confidence 11111110000 01134678999999643 334444443333345666776665432 21111 22
Q ss_pred CeeEEcCCCCHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhcCCcHHH
Q 009306 339 DEVYQMEELVHDDALRLFSRHAFGGDHPHESHTELACKTIKYARGVPLAL 388 (538)
Q Consensus 339 ~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal 388 (538)
...+.+.+++.++..+.+...+-.. ......+....+++.++|.+--+
T Consensus 161 ~~~~~~~~l~~~~~~~~l~~~~~~~--~~~i~~~~~~~i~~~s~G~~r~~ 208 (340)
T 1sxj_C 161 CTRFRFQPLPQEAIERRIANVLVHE--KLKLSPNAEKALIELSNGDMRRV 208 (340)
T ss_dssp SEEEECCCCCHHHHHHHHHHHHHTT--TCCBCHHHHHHHHHHHTTCHHHH
T ss_pred ceeEeccCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHcCCCHHHH
Confidence 3578999999999999888765221 12344667788999999988643
No 56
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=98.35 E-value=3.1e-06 Score=87.76 Aligned_cols=180 Identities=16% Similarity=0.142 Sum_probs=101.1
Q ss_pred CCceeccchhHHHHHhhhcC-----------CCCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhhcCC
Q 009306 188 EDLVGVRLPMKEIESLLRTG-----------STNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEETCR 256 (538)
Q Consensus 188 ~~~vGR~~~l~~l~~~L~~~-----------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 256 (538)
..++|.+..+++|.+++... ....+.+.|+|++|+|||+||+.+++.....| +.+. ....... .
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~f---v~vn-~~~l~~~-~ 278 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFF---FLIN-GPEIMSK-L 278 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEE---EEEE-HHHHHTS-C
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCE---EEEE-chHhhhh-h
Confidence 56899999999998876531 23445699999999999999999998764322 2222 2211110 0
Q ss_pred hHHHHHHHHHHHhcCCCCCCchhhcHHHHHHHhcCCCeEEEEecCCCh-------------HHHHHHhcCcCC--CCCCC
Q 009306 257 LGDLRQQLLSTLLNDGNVKNFLNTDLNFQSRRLTRKKVLIVFDDVDHP-------------RQIKILVGRLDL--FASGS 321 (538)
Q Consensus 257 ~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-------------~~~~~l~~~l~~--~~~~~ 321 (538)
... ........+.....+++.+|+||+++.. .....++..+.. ...+.
T Consensus 279 ~g~-----------------~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v 341 (489)
T 3hu3_A 279 AGE-----------------SESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHV 341 (489)
T ss_dssp TTH-----------------HHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCE
T ss_pred cch-----------------hHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCce
Confidence 000 0111122222333567889999999421 112223222221 12345
Q ss_pred EEEEeccchhh-----hhhcCCCeeEEcCCCCHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhcCC-cHHHHHHH
Q 009306 322 RIIITTRDRQV-----LANCGVDEVYQMEELVHDDALRLFSRHAFGGDHPHESHTELACKTIKYARGV-PLALEVLG 392 (538)
Q Consensus 322 ~iiiTtR~~~~-----~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~-PLal~~~~ 392 (538)
.||.||..... .........+.++..+.++-.+++..++....... ......+++.+.|+ +-.|..+.
T Consensus 342 ~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~---~~~l~~la~~t~g~s~~dL~~L~ 415 (489)
T 3hu3_A 342 IVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLAD---DVDLEQVANETHGHVGADLAALC 415 (489)
T ss_dssp EEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCT---TCCHHHHHHTCTTCCHHHHHHHH
T ss_pred EEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcc---hhhHHHHHHHccCCcHHHHHHHH
Confidence 56666654422 11123446789999999999999988863221111 11235566777765 44454443
No 57
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.34 E-value=5.6e-06 Score=85.71 Aligned_cols=149 Identities=13% Similarity=0.129 Sum_probs=83.2
Q ss_pred CCCCCceeccchhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhccce------eeEEEEeehhhhhhcCChH
Q 009306 185 SENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHF------SGSYFARNVREAEETCRLG 258 (538)
Q Consensus 185 ~~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f------~~~~~~~~~~~~~~~~~~~ 258 (538)
...+.++||+.+++.+...|... ...-+.|+|++|+|||+||+.++..+.... ...++..+..
T Consensus 177 ~~ld~iiGr~~~i~~l~~~l~r~--~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~--------- 245 (468)
T 3pxg_A 177 DSLDPVIGRSKEIQRVIEVLSRR--TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG--------- 245 (468)
T ss_dssp SCSCCCCCCHHHHHHHHHHHHCS--SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC------------
T ss_pred CCCCCccCcHHHHHHHHHHHhcc--CCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC---------
Confidence 34467999999999999998753 233478999999999999999999864321 1112221111
Q ss_pred HHHHHHHHHHhcCCCCCCchhhcHHHHHHHhcCCCeEEEEecCCChHHHHHHhcCcCCCCCCCEEEEeccchhhhh----
Q 009306 259 DLRQQLLSTLLNDGNVKNFLNTDLNFQSRRLTRKKVLIVFDDVDHPRQIKILVGRLDLFASGSRIIITTRDRQVLA---- 334 (538)
Q Consensus 259 ~l~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~~~~iiiTtR~~~~~~---- 334 (538)
....+ .........+...-..++.+|++| ...+....+...+. ....++|.+|.......
T Consensus 246 -------~~~~g-----~~e~~~~~~~~~~~~~~~~iLfiD--~~~~a~~~L~~~L~--~g~v~vI~at~~~e~~~~~~~ 309 (468)
T 3pxg_A 246 -------TKYRG-----EFEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEK 309 (468)
T ss_dssp -------------------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTT
T ss_pred -------ccccc-----hHHHHHHHHHHHHHhcCCeEEEEe--CchhHHHHHHHhhc--CCCEEEEecCCHHHHHHHhhc
Confidence 00000 000111122222223567899999 22222333444443 23456666665443111
Q ss_pred --h-cCCCeeEEcCCCCHHHHHHHHHhhh
Q 009306 335 --N-CGVDEVYQMEELVHDDALRLFSRHA 360 (538)
Q Consensus 335 --~-~~~~~~~~l~~L~~~ea~~Lf~~~~ 360 (538)
. ......+.+++++.++..+++....
T Consensus 310 ~~al~~Rf~~i~v~~p~~e~~~~iL~~~~ 338 (468)
T 3pxg_A 310 DAALERRFQPIQVDQPSVDESIQILQGLR 338 (468)
T ss_dssp CSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred CHHHHHhCccceeCCCCHHHHHHHHHHHH
Confidence 0 0122468999999999999998765
No 58
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.34 E-value=9.8e-06 Score=80.86 Aligned_cols=171 Identities=18% Similarity=0.215 Sum_probs=99.3
Q ss_pred CCceeccchhHHHHHhhhc-----------CCCCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhhc-C
Q 009306 188 EDLVGVRLPMKEIESLLRT-----------GSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEET-C 255 (538)
Q Consensus 188 ~~~vGR~~~l~~l~~~L~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~-~ 255 (538)
.++.|.+..+++|.+.+.- +-...+-+.++||+|+|||.||++++.+....|- .+. ..+.... .
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~---~v~-~s~l~sk~v 223 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFI---RVS-GAELVQKYI 223 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEE---EEE-GGGGSCSST
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCce---EEE-hHHhhcccc
Confidence 5678899888888775421 2333566999999999999999999998765532 222 1111100 0
Q ss_pred C-hHHHHHHHHHHHhcCCCCCCchhhcHHHHHHHhcCCCeEEEEecCCCh----------------HHHHHHhcCcCCC-
Q 009306 256 R-LGDLRQQLLSTLLNDGNVKNFLNTDLNFQSRRLTRKKVLIVFDDVDHP----------------RQIKILVGRLDLF- 317 (538)
Q Consensus 256 ~-~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~----------------~~~~~l~~~l~~~- 317 (538)
+ ....++.+ ....-...|++|+||++|.. ..+..++..+..+
T Consensus 224 Gese~~vr~l--------------------F~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~ 283 (405)
T 4b4t_J 224 GEGSRMVREL--------------------FVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFE 283 (405)
T ss_dssp THHHHHHHHH--------------------HHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTT
T ss_pred chHHHHHHHH--------------------HHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccC
Confidence 0 01111111 11222467999999999742 1133333333322
Q ss_pred -CCCCEEEEeccchhh-----hhhcCCCeeEEcCCCCHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhcCCc
Q 009306 318 -ASGSRIIITTRDRQV-----LANCGVDEVYQMEELVHDDALRLFSRHAFGGDHPHESHTELACKTIKYARGVP 385 (538)
Q Consensus 318 -~~~~~iiiTtR~~~~-----~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 385 (538)
..+..||.||..... ...-+.+..+.++..+.++-.++|..+.-+-...... ....+++.+.|.-
T Consensus 284 ~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dv---dl~~lA~~t~G~S 354 (405)
T 4b4t_J 284 TSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGI---NLRKVAEKMNGCS 354 (405)
T ss_dssp CCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSC---CHHHHHHHCCSCC
T ss_pred CCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccC---CHHHHHHHCCCCC
Confidence 234455666654422 2222456789999999999999998776322211111 1456778887764
No 59
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.33 E-value=1.8e-06 Score=96.30 Aligned_cols=177 Identities=11% Similarity=0.100 Sum_probs=91.2
Q ss_pred CCCCCceeccchhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhccce------eeEEEEeehhhhhhcCChH
Q 009306 185 SENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHF------SGSYFARNVREAEETCRLG 258 (538)
Q Consensus 185 ~~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f------~~~~~~~~~~~~~~~~~~~ 258 (538)
...+.++||+.+++.+...|.... .+.+.|+|++|+|||+||+.++..+.... ...++..+......
T Consensus 167 ~~ld~viGr~~~i~~l~~~l~~~~--~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~----- 239 (854)
T 1qvr_A 167 GKLDPVIGRDEEIRRVIQILLRRT--KNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA----- 239 (854)
T ss_dssp TCSCCCCSCHHHHHHHHHHHHCSS--CCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC----------
T ss_pred CCCcccCCcHHHHHHHHHHHhcCC--CCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc-----
Confidence 344679999999999999887532 33478999999999999999999864311 12222221111000
Q ss_pred HHHHHHHHHHhcCCCCCCchhhcHHHHHHHh-c-CCCeEEEEecCCChH----------HHHHHhcCcCCCCCCCEEEEe
Q 009306 259 DLRQQLLSTLLNDGNVKNFLNTDLNFQSRRL-T-RKKVLIVFDDVDHPR----------QIKILVGRLDLFASGSRIIIT 326 (538)
Q Consensus 259 ~l~~~l~~~l~~~~~~~~~~~~~~~~l~~~l-~-~k~~LlVlDdv~~~~----------~~~~l~~~l~~~~~~~~iiiT 326 (538)
+.. ...........+...+ . +++.+|+||+++... ....+...+. ..+..+|.+
T Consensus 240 -----------g~~-~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~--~~~i~~I~a 305 (854)
T 1qvr_A 240 -----------GAK-YRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALA--RGELRLIGA 305 (854)
T ss_dssp ------------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHH--TTCCCEEEE
T ss_pred -----------cCc-cchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHh--CCCeEEEEe
Confidence 000 0011111122222222 2 367899999997542 1111222221 234456655
Q ss_pred ccchhh-----hhhc-CCCeeEEcCCCCHHHHHHHHHhhhcC--CCCCCCchHHHHHHHHHHhc
Q 009306 327 TRDRQV-----LANC-GVDEVYQMEELVHDDALRLFSRHAFG--GDHPHESHTELACKTIKYAR 382 (538)
Q Consensus 327 tR~~~~-----~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~--~~~~~~~~~~~~~~i~~~~~ 382 (538)
|..... ...+ .....+.+++++.++..+++....-. .........+....+++.+.
T Consensus 306 t~~~~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~ 369 (854)
T 1qvr_A 306 TTLDEYREIEKDPALERRFQPVYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSH 369 (854)
T ss_dssp ECHHHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHH
T ss_pred cCchHHhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHh
Confidence 543322 1111 12245889999999999998754310 01112233455555666553
No 60
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.31 E-value=6.1e-07 Score=77.22 Aligned_cols=47 Identities=19% Similarity=0.178 Sum_probs=36.2
Q ss_pred CceeccchhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhh
Q 009306 189 DLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKI 235 (538)
Q Consensus 189 ~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (538)
.++|+...++++.+.+..-......|.|+|++|+|||++|+.+++..
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 57899999999988775422233348999999999999999999864
No 61
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=98.27 E-value=9.8e-06 Score=76.85 Aligned_cols=181 Identities=18% Similarity=0.139 Sum_probs=94.8
Q ss_pred CCCCceeccchhHHHHHhhhc----------CCCCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhhcC
Q 009306 186 ENEDLVGVRLPMKEIESLLRT----------GSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEETC 255 (538)
Q Consensus 186 ~~~~~vGR~~~l~~l~~~L~~----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~ 255 (538)
.-.+++|.+..++++.+++.. +....+-+.|+|++|+||||||+.++......| +.+. .......
T Consensus 10 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~---~~i~-~~~~~~~- 84 (257)
T 1lv7_A 10 TFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPF---FTIS-GSDFVEM- 84 (257)
T ss_dssp CGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCE---EEEC-SCSSTTS-
T ss_pred CHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCE---EEEe-HHHHHHH-
Confidence 446788998888777665421 111234589999999999999999998764332 2222 1110000
Q ss_pred ChHHHHHHHHHHHhcCCCCCCchhhcHHHHHHHhcCCCeEEEEecCCCh----------------HHHHHHhcCcCCC--
Q 009306 256 RLGDLRQQLLSTLLNDGNVKNFLNTDLNFQSRRLTRKKVLIVFDDVDHP----------------RQIKILVGRLDLF-- 317 (538)
Q Consensus 256 ~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~----------------~~~~~l~~~l~~~-- 317 (538)
............+.......+.++++|+++.. ..+..++..+...
T Consensus 85 -----------------~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 147 (257)
T 1lv7_A 85 -----------------FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEG 147 (257)
T ss_dssp -----------------CCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCS
T ss_pred -----------------hhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCccc
Confidence 00011111112222223456789999998421 1223333222111
Q ss_pred CCCCEEEEeccchhhh-hhc----CCCeeEEcCCCCHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhcC-CcHHHHHH
Q 009306 318 ASGSRIIITTRDRQVL-ANC----GVDEVYQMEELVHDDALRLFSRHAFGGDHPHESHTELACKTIKYARG-VPLALEVL 391 (538)
Q Consensus 318 ~~~~~iiiTtR~~~~~-~~~----~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G-~PLal~~~ 391 (538)
..+..||.||.....+ ..+ .....+.++..+.++-.+++..+........+. ....++..+.| ++--|..+
T Consensus 148 ~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~---~~~~la~~~~G~~~~dl~~l 224 (257)
T 1lv7_A 148 NEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDI---DAAIIARGTPGFSGADLANL 224 (257)
T ss_dssp SSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTC---CHHHHHHTCTTCCHHHHHHH
T ss_pred CCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccc---cHHHHHHHcCCCCHHHHHHH
Confidence 2344566666544321 111 234678888889888888887765221111111 13445666777 66555443
No 62
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.25 E-value=2.6e-05 Score=78.86 Aligned_cols=171 Identities=17% Similarity=0.197 Sum_probs=98.2
Q ss_pred CCceeccchhHHHHHhhhc-----------CCCCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhh-cC
Q 009306 188 EDLVGVRLPMKEIESLLRT-----------GSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEE-TC 255 (538)
Q Consensus 188 ~~~vGR~~~l~~l~~~L~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~-~~ 255 (538)
.++.|.+..+++|.+.+.- +-...+-|.++|++|+|||.||++++.+....|- .+. ...... ..
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi---~vs-~s~L~sk~v 284 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFI---RVI-GSELVQKYV 284 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEE---EEE-GGGGCCCSS
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeE---EEE-hHHhhcccC
Confidence 4688999888888775421 3344667999999999999999999998765432 222 111110 00
Q ss_pred C-hHHHHHHHHHHHhcCCCCCCchhhcHHHHHHHhcCCCeEEEEecCCCh----------------HHHHHHhcCcCCC-
Q 009306 256 R-LGDLRQQLLSTLLNDGNVKNFLNTDLNFQSRRLTRKKVLIVFDDVDHP----------------RQIKILVGRLDLF- 317 (538)
Q Consensus 256 ~-~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~----------------~~~~~l~~~l~~~- 317 (538)
+ ....++ ......-...|++|++|+++.. ..+..++..+..+
T Consensus 285 Gesek~ir--------------------~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~ 344 (467)
T 4b4t_H 285 GEGARMVR--------------------ELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFD 344 (467)
T ss_dssp SHHHHHHH--------------------HHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSC
T ss_pred CHHHHHHH--------------------HHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccC
Confidence 0 011111 1112223467999999999742 0122222222222
Q ss_pred -CCCCEEEEeccchhh-----hhhcCCCeeEEcCCCCHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhcCCc
Q 009306 318 -ASGSRIIITTRDRQV-----LANCGVDEVYQMEELVHDDALRLFSRHAFGGDHPHESHTELACKTIKYARGVP 385 (538)
Q Consensus 318 -~~~~~iiiTtR~~~~-----~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 385 (538)
..+..||.||..... ...-+.+..++++..+.++-.++|..+..+-...... ....+++.+.|.-
T Consensus 345 ~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dv---dl~~LA~~T~GfS 415 (467)
T 4b4t_H 345 PRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGI---RWELISRLCPNST 415 (467)
T ss_dssp CTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSC---CHHHHHHHCCSCC
T ss_pred CCCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCC---CHHHHHHHCCCCC
Confidence 234445666654422 2222456789999999999999998776322111111 1456777887764
No 63
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=98.25 E-value=3.4e-06 Score=82.32 Aligned_cols=50 Identities=20% Similarity=0.288 Sum_probs=37.8
Q ss_pred CCceeccchhHHHHHhhhc------------CCCCceEEEEeccCCCchhHHHHHHHHhhcc
Q 009306 188 EDLVGVRLPMKEIESLLRT------------GSTNVYKLGIWGIGGIGKTTIAGAIFNKISR 237 (538)
Q Consensus 188 ~~~vGR~~~l~~l~~~L~~------------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 237 (538)
+.++|++..++.+...+.. .......+.|+|++|+|||++|+.+++.+..
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~ 76 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANA 76 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4578888888888776643 0112345889999999999999999987743
No 64
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.22 E-value=1.8e-05 Score=80.27 Aligned_cols=172 Identities=19% Similarity=0.259 Sum_probs=99.2
Q ss_pred CCCceeccchhHHHHHhhhc-----------CCCCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhh-c
Q 009306 187 NEDLVGVRLPMKEIESLLRT-----------GSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEE-T 254 (538)
Q Consensus 187 ~~~~vGR~~~l~~l~~~L~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~-~ 254 (538)
-.++.|.+..+++|.+.+.- +....+-+.++||+|+|||.||++++......|- .+. ...... .
T Consensus 180 ~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~---~v~-~s~l~sk~ 255 (437)
T 4b4t_L 180 FDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFI---FSP-ASGIVDKY 255 (437)
T ss_dssp SGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEE---EEE-GGGTCCSS
T ss_pred hhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEE---EEe-hhhhcccc
Confidence 35678999988888775432 2334567999999999999999999998765432 222 111110 0
Q ss_pred CC-hHHHHHHHHHHHhcCCCCCCchhhcHHHHHHHhcCCCeEEEEecCCCh----------------HHHHHHhcCcCCC
Q 009306 255 CR-LGDLRQQLLSTLLNDGNVKNFLNTDLNFQSRRLTRKKVLIVFDDVDHP----------------RQIKILVGRLDLF 317 (538)
Q Consensus 255 ~~-~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~----------------~~~~~l~~~l~~~ 317 (538)
.+ .....+ ......-...|++|++|++|.. ..+..++..+..+
T Consensus 256 ~Gese~~ir--------------------~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~ 315 (437)
T 4b4t_L 256 IGESARIIR--------------------EMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGF 315 (437)
T ss_dssp SSHHHHHHH--------------------HHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSS
T ss_pred chHHHHHHH--------------------HHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcc
Confidence 00 011111 1111222468999999999732 1123333333222
Q ss_pred --CCCCEEEEeccchhhhhh-c----CCCeeEEcCCCCHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhcCCc
Q 009306 318 --ASGSRIIITTRDRQVLAN-C----GVDEVYQMEELVHDDALRLFSRHAFGGDHPHESHTELACKTIKYARGVP 385 (538)
Q Consensus 318 --~~~~~iiiTtR~~~~~~~-~----~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 385 (538)
..+..||.||.....+.. + ..+..+.++..+.++-.++|..+..+-....+. ....+++.+.|+-
T Consensus 316 ~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~---dl~~lA~~t~G~s 387 (437)
T 4b4t_L 316 DNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEF---DFEAAVKMSDGFN 387 (437)
T ss_dssp SCTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCC---CHHHHHHTCCSCC
T ss_pred cCCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCccc---CHHHHHHhCCCCC
Confidence 235567777765533221 1 234678899999999889888776332211111 1456777777764
No 65
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.21 E-value=5.9e-06 Score=83.66 Aligned_cols=172 Identities=16% Similarity=0.176 Sum_probs=97.8
Q ss_pred CCCceeccchhHHHHHhhhc-----------CCCCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhh-c
Q 009306 187 NEDLVGVRLPMKEIESLLRT-----------GSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEE-T 254 (538)
Q Consensus 187 ~~~~vGR~~~l~~l~~~L~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~-~ 254 (538)
-.++.|.+...++|.+.+.. +....+-+.++||+|+|||.||++++.+....| +......... .
T Consensus 180 ~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f----~~v~~s~l~~~~ 255 (434)
T 4b4t_M 180 YSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATF----LKLAAPQLVQMY 255 (434)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEE----EEEEGGGGCSSC
T ss_pred hHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCE----EEEehhhhhhcc
Confidence 36788999988888765321 233466799999999999999999999876543 2221111110 0
Q ss_pred CC-hHHHHHHHHHHHhcCCCCCCchhhcHHHHHHHhcCCCeEEEEecCCCh----------------HHHHHHhcCcCCC
Q 009306 255 CR-LGDLRQQLLSTLLNDGNVKNFLNTDLNFQSRRLTRKKVLIVFDDVDHP----------------RQIKILVGRLDLF 317 (538)
Q Consensus 255 ~~-~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~----------------~~~~~l~~~l~~~ 317 (538)
.+ .....+.++ ...-...|++|++|++|.. ..+..++..+..+
T Consensus 256 vGese~~ir~lF--------------------~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~ 315 (434)
T 4b4t_M 256 IGEGAKLVRDAF--------------------ALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGF 315 (434)
T ss_dssp SSHHHHHHHHHH--------------------HHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTS
T ss_pred cchHHHHHHHHH--------------------HHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhcc
Confidence 00 011111111 1112357899999998632 0123344444433
Q ss_pred C--CCCEEEEeccchhhhhh-----cCCCeeEEcCCCCHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhcCCc
Q 009306 318 A--SGSRIIITTRDRQVLAN-----CGVDEVYQMEELVHDDALRLFSRHAFGGDHPHESHTELACKTIKYARGVP 385 (538)
Q Consensus 318 ~--~~~~iiiTtR~~~~~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 385 (538)
. .+..||.||.....+.. -..+..+.++..+.++-.++|..+.-+-...... ....+++.+.|+-
T Consensus 316 ~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dv---dl~~lA~~t~G~s 387 (434)
T 4b4t_M 316 SSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDI---NWQELARSTDEFN 387 (434)
T ss_dssp CSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCC---CHHHHHHHCSSCC
T ss_pred CCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcC---CHHHHHHhCCCCC
Confidence 2 34456667755433221 1244678899999998888887765221111111 1456777777753
No 66
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.15 E-value=7.2e-06 Score=73.17 Aligned_cols=49 Identities=20% Similarity=0.198 Sum_probs=33.1
Q ss_pred CCcee----ccchhHHHHHhhhcC-CCCceEEEEeccCCCchhHHHHHHHHhhc
Q 009306 188 EDLVG----VRLPMKEIESLLRTG-STNVYKLGIWGIGGIGKTTIAGAIFNKIS 236 (538)
Q Consensus 188 ~~~vG----R~~~l~~l~~~L~~~-~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (538)
++|++ +...++.+.+++..- ......++|+|++|+|||||++.++..+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 10 DTYHPKNVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp SSCCCCSHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred ccccCCCHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 44554 334444444444331 12346799999999999999999999875
No 67
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.14 E-value=2.6e-05 Score=78.13 Aligned_cols=172 Identities=18% Similarity=0.197 Sum_probs=97.3
Q ss_pred CCCceeccchhHHHHHhhhc-----------CCCCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhh-c
Q 009306 187 NEDLVGVRLPMKEIESLLRT-----------GSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEE-T 254 (538)
Q Consensus 187 ~~~~vGR~~~l~~l~~~L~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~-~ 254 (538)
-.++-|.+...++|.+.+.. +....+-+.++||+|+|||.||++++.+....|- .+. ..+... .
T Consensus 181 ~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi---~v~-~s~l~sk~ 256 (437)
T 4b4t_I 181 YSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFL---RIV-GSELIQKY 256 (437)
T ss_dssp GGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEE---EEE-SGGGCCSS
T ss_pred ceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEE---EEE-HHHhhhcc
Confidence 35678899888888775421 2234567999999999999999999998765432 121 111110 0
Q ss_pred CC-hHHHHHHHHHHHhcCCCCCCchhhcHHHHHHHhcCCCeEEEEecCCCh----------------HHHHHHhcCcCCC
Q 009306 255 CR-LGDLRQQLLSTLLNDGNVKNFLNTDLNFQSRRLTRKKVLIVFDDVDHP----------------RQIKILVGRLDLF 317 (538)
Q Consensus 255 ~~-~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~----------------~~~~~l~~~l~~~ 317 (538)
.+ .....+.+ ....-...|++|++|++|.. ..+..++..+..+
T Consensus 257 vGesek~ir~l--------------------F~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~ 316 (437)
T 4b4t_I 257 LGDGPRLCRQI--------------------FKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGF 316 (437)
T ss_dssp SSHHHHHHHHH--------------------HHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHC
T ss_pred CchHHHHHHHH--------------------HHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCc
Confidence 00 01111111 11122467899999998632 1122333222211
Q ss_pred --CCCCEEEEeccchhhhhh-c----CCCeeEEcCCCCHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhcCCc
Q 009306 318 --ASGSRIIITTRDRQVLAN-C----GVDEVYQMEELVHDDALRLFSRHAFGGDHPHESHTELACKTIKYARGVP 385 (538)
Q Consensus 318 --~~~~~iiiTtR~~~~~~~-~----~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 385 (538)
..+..||.||.....+.. + ..+..+.++..+.++-.++|..+.-+-....+. ....+++.+.|+-
T Consensus 317 ~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dv---dl~~LA~~T~GfS 388 (437)
T 4b4t_I 317 DDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDV---NLETLVTTKDDLS 388 (437)
T ss_dssp CCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCC---CHHHHHHHCCSCC
T ss_pred CCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcC---CHHHHHHhCCCCC
Confidence 234456666655443321 1 234568899999999999998776322211111 1456777777763
No 68
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=98.13 E-value=1.1e-05 Score=78.39 Aligned_cols=146 Identities=11% Similarity=0.093 Sum_probs=88.6
Q ss_pred eccchhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhc---cceeeEEEEeehhhhhhcCChHHHHHHHHHHH
Q 009306 192 GVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKIS---RHFSGSYFARNVREAEETCRLGDLRQQLLSTL 268 (538)
Q Consensus 192 GR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~---~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l 268 (538)
|-+..++.|...+..+. .+.+.++|++|+||||+|..+++... ..++....+... .....+.. .+.+....
T Consensus 1 g~~~~~~~L~~~i~~~~--~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~---~~~~~id~-ir~li~~~ 74 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSE--GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPE---GENIGIDD-IRTIKDFL 74 (305)
T ss_dssp ---CHHHHHHHHHHTCS--SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCS---SSCBCHHH-HHHHHHHH
T ss_pred ChHHHHHHHHHHHHCCC--CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCC---cCCCCHHH-HHHHHHHH
Confidence 44566777888777543 67899999999999999999987521 112223333210 00112222 22233322
Q ss_pred hcCCCCCCchhhcHHHHHHHhcCCCeEEEEecCCC--hHHHHHHhcCcCCCCCCCEEEEeccch-hhhhhcCCCeeEEcC
Q 009306 269 LNDGNVKNFLNTDLNFQSRRLTRKKVLIVFDDVDH--PRQIKILVGRLDLFASGSRIIITTRDR-QVLANCGVDEVYQME 345 (538)
Q Consensus 269 ~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~--~~~~~~l~~~l~~~~~~~~iiiTtR~~-~~~~~~~~~~~~~l~ 345 (538)
...+ ..+++-++|+|+++. ......++..+....+.+.+|++|.+. .+.+.+... .++++
T Consensus 75 ~~~p----------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f~ 137 (305)
T 2gno_A 75 NYSP----------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRVV 137 (305)
T ss_dssp TSCC----------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEEE
T ss_pred hhcc----------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeCC
Confidence 2110 013456899999974 345566666665545677777666443 444555445 89999
Q ss_pred CCCHHHHHHHHHhhh
Q 009306 346 ELVHDDALRLFSRHA 360 (538)
Q Consensus 346 ~L~~~ea~~Lf~~~~ 360 (538)
+++.++..+.+....
T Consensus 138 ~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 138 VNVPKEFRDLVKEKI 152 (305)
T ss_dssp CCCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999998876
No 69
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=98.10 E-value=2.3e-06 Score=81.78 Aligned_cols=153 Identities=14% Similarity=0.187 Sum_probs=84.5
Q ss_pred CCCCceeccchhHHHHHhhhc----------CCCCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhhcC
Q 009306 186 ENEDLVGVRLPMKEIESLLRT----------GSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEETC 255 (538)
Q Consensus 186 ~~~~~vGR~~~l~~l~~~L~~----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~ 255 (538)
....++|.+..++.|.+.+.. +....+.+.|+|++|+|||+||+.++......|- .+. ...
T Consensus 9 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~---~v~-~~~----- 79 (268)
T 2r62_A 9 RFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFF---SMG-GSS----- 79 (268)
T ss_dssp CSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCC---CCC-SCT-----
T ss_pred CHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEE---Eec-hHH-----
Confidence 346799999998888876541 1112334889999999999999999987644321 111 000
Q ss_pred ChHHHHHHHHHHHhcCCCCCCchhhcHHHHHHHhcCCCeEEEEecCCChHH-----------------HHHHhcCcCCCC
Q 009306 256 RLGDLRQQLLSTLLNDGNVKNFLNTDLNFQSRRLTRKKVLIVFDDVDHPRQ-----------------IKILVGRLDLFA 318 (538)
Q Consensus 256 ~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~-----------------~~~l~~~l~~~~ 318 (538)
+.. ...+. .......... .....++.+|+|||++.... +..++..+....
T Consensus 80 -~~~-------~~~~~--~~~~~~~~~~---~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~ 146 (268)
T 2r62_A 80 -FIE-------MFVGL--GASRVRDLFE---TAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFG 146 (268)
T ss_dssp -TTT-------SCSSS--CSSSSSTTHH---HHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSS
T ss_pred -HHH-------hhcch--HHHHHHHHHH---HHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcc
Confidence 000 00000 0011222222 22235678999999964311 222333322211
Q ss_pred ---CCCEEEEeccchhhh-----hhcCCCeeEEcCCCCHHHHHHHHHhhh
Q 009306 319 ---SGSRIIITTRDRQVL-----ANCGVDEVYQMEELVHDDALRLFSRHA 360 (538)
Q Consensus 319 ---~~~~iiiTtR~~~~~-----~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 360 (538)
....||.||.....+ ........+.++.++.++-.+++....
T Consensus 147 ~~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~ 196 (268)
T 2r62_A 147 SENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHI 196 (268)
T ss_dssp CSCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHT
T ss_pred cCCCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHH
Confidence 224566666544321 111233567888899999888887765
No 70
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.10 E-value=1.8e-05 Score=80.13 Aligned_cols=171 Identities=18% Similarity=0.187 Sum_probs=92.1
Q ss_pred CCceeccchhHHHHHhhhc-----------CCCCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhh-cC
Q 009306 188 EDLVGVRLPMKEIESLLRT-----------GSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEE-TC 255 (538)
Q Consensus 188 ~~~vGR~~~l~~l~~~L~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~-~~ 255 (538)
.++.|.+...++|.+.+.. +-...+-+.++||+|+|||+||+++++.....|- .+. ..+... ..
T Consensus 172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~---~v~-~~~l~~~~~ 247 (428)
T 4b4t_K 172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFI---RVN-GSEFVHKYL 247 (428)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEE---EEE-GGGTCCSSC
T ss_pred HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeE---EEe-cchhhcccc
Confidence 5788999888888775431 3344667999999999999999999998765432 222 111100 00
Q ss_pred C-hHHHHHHHHHHHhcCCCCCCchhhcHHHHHHHhcCCCeEEEEecCCCh----------------HHHHHHhcCcCCC-
Q 009306 256 R-LGDLRQQLLSTLLNDGNVKNFLNTDLNFQSRRLTRKKVLIVFDDVDHP----------------RQIKILVGRLDLF- 317 (538)
Q Consensus 256 ~-~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~----------------~~~~~l~~~l~~~- 317 (538)
+ ....++.+ ....-...|++|++|+++.. ..+..++..+..+
T Consensus 248 Ge~e~~ir~l--------------------F~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~ 307 (428)
T 4b4t_K 248 GEGPRMVRDV--------------------FRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFD 307 (428)
T ss_dssp SHHHHHHHHH--------------------HHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSC
T ss_pred chhHHHHHHH--------------------HHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCC
Confidence 0 01111111 11222467899999998521 1123333322211
Q ss_pred -CCCCEEEEeccchhh-----hhhcCCCeeEEcCCC-CHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhcCCc
Q 009306 318 -ASGSRIIITTRDRQV-----LANCGVDEVYQMEEL-VHDDALRLFSRHAFGGDHPHESHTELACKTIKYARGVP 385 (538)
Q Consensus 318 -~~~~~iiiTtR~~~~-----~~~~~~~~~~~l~~L-~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 385 (538)
..+..||.||..... ....+.+..++++.+ +.++-.++|..+.-+-....+. ....+++.+.|.-
T Consensus 308 ~~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~---dl~~lA~~t~G~s 379 (428)
T 4b4t_K 308 QSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEA---DLDSLIIRNDSLS 379 (428)
T ss_dssp SSCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTC---CHHHHHHHTTTCC
T ss_pred CCCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCccc---CHHHHHHHCCCCC
Confidence 234556667754422 111123456788765 4555556666555221111111 1456777777764
No 71
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=98.10 E-value=3.1e-05 Score=85.34 Aligned_cols=149 Identities=13% Similarity=0.125 Sum_probs=84.2
Q ss_pred CCCCCceeccchhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhccce------eeEEEEeehhhhhhcCChH
Q 009306 185 SENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHF------SGSYFARNVREAEETCRLG 258 (538)
Q Consensus 185 ~~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f------~~~~~~~~~~~~~~~~~~~ 258 (538)
...+.++||+.+++.+...|... ...-+.|+|++|+|||++|+.++..+.... ...++..+.
T Consensus 177 ~~ld~iiG~~~~i~~l~~~l~~~--~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~---------- 244 (758)
T 3pxi_A 177 DSLDPVIGRSKEIQRVIEVLSRR--TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM---------- 244 (758)
T ss_dssp SCSCCCCCCHHHHHHHHHHHHCS--SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC------------
T ss_pred CCCCCccCchHHHHHHHHHHhCC--CCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc----------
Confidence 34467999999999999998753 233478999999999999999999863321 112221111
Q ss_pred HHHHHHHHHHhcCCCCCCchhhcHHHHHHHhcCCCeEEEEecCCChHHHHHHhcCcCCCCCCCEEEEeccchhhhh----
Q 009306 259 DLRQQLLSTLLNDGNVKNFLNTDLNFQSRRLTRKKVLIVFDDVDHPRQIKILVGRLDLFASGSRIIITTRDRQVLA---- 334 (538)
Q Consensus 259 ~l~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~~~~iiiTtR~~~~~~---- 334 (538)
.....+ .........+......++.+|+|| ...+....+...+. ....++|.+|.......
T Consensus 245 ------g~~~~G-----~~e~~l~~~~~~~~~~~~~iLfiD--~~~~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~ 309 (758)
T 3pxi_A 245 ------GTKYRG-----EFEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEK 309 (758)
T ss_dssp -------------------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTT
T ss_pred ------cccccc-----hHHHHHHHHHHHHHhcCCEEEEEc--CchhHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhc
Confidence 000000 001111222223334678899999 22333334444443 33466666665443111
Q ss_pred --hc-CCCeeEEcCCCCHHHHHHHHHhhh
Q 009306 335 --NC-GVDEVYQMEELVHDDALRLFSRHA 360 (538)
Q Consensus 335 --~~-~~~~~~~l~~L~~~ea~~Lf~~~~ 360 (538)
.+ .....+.++.++.++..+++....
T Consensus 310 d~al~rRf~~i~v~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 310 DAALERRFQPIQVDQPSVDESIQILQGLR 338 (758)
T ss_dssp CSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred cHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 00 112578999999999999998655
No 72
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.09 E-value=6.4e-05 Score=77.29 Aligned_cols=174 Identities=15% Similarity=0.180 Sum_probs=97.0
Q ss_pred CCCceeccchhHHHHHhhhc----------CCCCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhhcCC
Q 009306 187 NEDLVGVRLPMKEIESLLRT----------GSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEETCR 256 (538)
Q Consensus 187 ~~~~vGR~~~l~~l~~~L~~----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 256 (538)
..+++|.+..++++.++... +..-.+-+.|+|++|+|||+||+.++.+....| +.+. ..+.....
T Consensus 15 f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f---~~is-~~~~~~~~- 89 (476)
T 2ce7_A 15 FKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPF---FHIS-GSDFVELF- 89 (476)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCE---EEEE-GGGTTTCC-
T ss_pred HHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCe---eeCC-HHHHHHHH-
Confidence 35688988887777665432 111234588999999999999999998764432 1222 11111100
Q ss_pred hHHHHHHHHHHHhcCCCCCCchhhcHHHHHHHhcCCCeEEEEecCCCh----------------HHHHHHhcCcCCC--C
Q 009306 257 LGDLRQQLLSTLLNDGNVKNFLNTDLNFQSRRLTRKKVLIVFDDVDHP----------------RQIKILVGRLDLF--A 318 (538)
Q Consensus 257 ~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~----------------~~~~~l~~~l~~~--~ 318 (538)
.. .........+.......+.+|+||+++.. ..+..++..+..+ .
T Consensus 90 ~g-----------------~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~ 152 (476)
T 2ce7_A 90 VG-----------------VGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSK 152 (476)
T ss_dssp TT-----------------HHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGG
T ss_pred hc-----------------ccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCC
Confidence 00 00111122233334567899999999542 1233333322211 2
Q ss_pred CCCEEEEeccchhhhh-h-c---CCCeeEEcCCCCHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhcCCc
Q 009306 319 SGSRIIITTRDRQVLA-N-C---GVDEVYQMEELVHDDALRLFSRHAFGGDHPHESHTELACKTIKYARGVP 385 (538)
Q Consensus 319 ~~~~iiiTtR~~~~~~-~-~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 385 (538)
.+..||.||.....+. . . .....+.++..+.++-.+++..+........+. ....+++.+.|+.
T Consensus 153 ~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v---~l~~la~~t~G~s 221 (476)
T 2ce7_A 153 EGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDV---NLEIIAKRTPGFV 221 (476)
T ss_dssp GTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTC---CHHHHHHTCTTCC
T ss_pred CCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchh---hHHHHHHhcCCCc
Confidence 3556666666553322 1 1 244588899999888888887766322111111 1345778888887
No 73
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=98.09 E-value=2.3e-05 Score=76.39 Aligned_cols=50 Identities=18% Similarity=0.333 Sum_probs=38.5
Q ss_pred CCceeccchhHHHHHhhhcC------C-CCceEEEEeccCCCchhHHHHHHHHhhcc
Q 009306 188 EDLVGVRLPMKEIESLLRTG------S-TNVYKLGIWGIGGIGKTTIAGAIFNKISR 237 (538)
Q Consensus 188 ~~~vGR~~~l~~l~~~L~~~------~-~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 237 (538)
..++|.+..++.+...+... . .....+.|+|++|+|||++|+.++.....
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~ 73 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFD 73 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHS
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcC
Confidence 45789988888887776542 1 11357999999999999999999987644
No 74
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=98.08 E-value=3.2e-05 Score=85.30 Aligned_cols=155 Identities=12% Similarity=0.156 Sum_probs=89.4
Q ss_pred CCCCCceeccchhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhccc------eeeEEEEeehhhhhhcCChH
Q 009306 185 SENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRH------FSGSYFARNVREAEETCRLG 258 (538)
Q Consensus 185 ~~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~------f~~~~~~~~~~~~~~~~~~~ 258 (538)
...+.++||+.+++.+.+.|... ....+.|+|++|+|||++|+.++..+... ....++..+.....
T Consensus 183 ~~~d~~iGr~~~i~~l~~~l~~~--~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~------ 254 (758)
T 1r6b_X 183 GGIDPLIGREKELERAIQVLCRR--RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLL------ 254 (758)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTSS--SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---------
T ss_pred CCCCCccCCHHHHHHHHHHHhcc--CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHh------
Confidence 34467999999999999988753 33457899999999999999999876321 12223322111100
Q ss_pred HHHHHHHHHHhcCCCCCCchhhcHHHHHHHh-cCCCeEEEEecCCCh----------HH-HHHHhcCcCCCCCCCEEEEe
Q 009306 259 DLRQQLLSTLLNDGNVKNFLNTDLNFQSRRL-TRKKVLIVFDDVDHP----------RQ-IKILVGRLDLFASGSRIIIT 326 (538)
Q Consensus 259 ~l~~~l~~~l~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~----------~~-~~~l~~~l~~~~~~~~iiiT 326 (538)
.+. ......+.....+.+.+ ..++.+|+||+++.. .. ...+...+. ....++|.+
T Consensus 255 ----------~~~-~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~--~~~~~~I~a 321 (758)
T 1r6b_X 255 ----------AGT-KYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS--SGKIRVIGS 321 (758)
T ss_dssp ----------CCC-CCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS--SCCCEEEEE
T ss_pred ----------ccc-cccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh--CCCeEEEEE
Confidence 000 00112222222222333 335789999999754 12 223333332 235566666
Q ss_pred ccchhhhhhc-------CCCeeEEcCCCCHHHHHHHHHhhh
Q 009306 327 TRDRQVLANC-------GVDEVYQMEELVHDDALRLFSRHA 360 (538)
Q Consensus 327 tR~~~~~~~~-------~~~~~~~l~~L~~~ea~~Lf~~~~ 360 (538)
|......... .....+.++.++.++..+++....
T Consensus 322 t~~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 322 TTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp ECHHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred eCchHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 6544321111 112368899999999998887654
No 75
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=98.05 E-value=2.3e-05 Score=74.58 Aligned_cols=49 Identities=22% Similarity=0.182 Sum_probs=35.2
Q ss_pred CCceeccchhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhc
Q 009306 188 EDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKIS 236 (538)
Q Consensus 188 ~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (538)
+.++|.+..+..+.+.+..-......+.|+|++|+|||+||+.+++...
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcC
Confidence 5689999998888776654112234588999999999999999998754
No 76
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=98.00 E-value=0.00018 Score=74.24 Aligned_cols=95 Identities=8% Similarity=-0.035 Sum_probs=57.7
Q ss_pred eEEEEecCCC--hHHHHHHhcCcCCCCCCCEEEEec---------cc----h-hhhh-hcCCCeeEEcCCCCHHHHHHHH
Q 009306 294 VLIVFDDVDH--PRQIKILVGRLDLFASGSRIIITT---------RD----R-QVLA-NCGVDEVYQMEELVHDDALRLF 356 (538)
Q Consensus 294 ~LlVlDdv~~--~~~~~~l~~~l~~~~~~~~iiiTt---------R~----~-~~~~-~~~~~~~~~l~~L~~~ea~~Lf 356 (538)
-+++||+++. .+....+...+...... .+|+.| .+ . .+.+ .......+.+++++.++..+++
T Consensus 297 ~VliIDEa~~l~~~a~~aLlk~lEe~~~~-~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~~~~~~~~~~~e~~~iL 375 (456)
T 2c9o_A 297 GVLFVDEVHMLDIECFTYLHRALESSIAP-IVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQII 375 (456)
T ss_dssp CEEEEESGGGCBHHHHHHHHHHTTSTTCC-EEEEEECCSEEECBTTSSCEEETTCCHHHHTTEEEEECCCCCHHHHHHHH
T ss_pred eEEEEechhhcCHHHHHHHHHHhhccCCC-EEEEecCCccccccccccccccccCChhHHhhcceeeCCCCCHHHHHHHH
Confidence 3899999964 45667777666543444 344333 11 1 1111 1112345799999999999999
Q ss_pred HhhhcCCCCCCCchHHHHHHHHHHh-cCCcHHHHHH
Q 009306 357 SRHAFGGDHPHESHTELACKTIKYA-RGVPLALEVL 391 (538)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~i~~~~-~G~PLal~~~ 391 (538)
..++-. .......+....+++.+ .|.|.....+
T Consensus 376 ~~~~~~--~~~~~~~~~~~~i~~~a~~g~~r~a~~l 409 (456)
T 2c9o_A 376 KIRAQT--EGINISEEALNHLGEIGTKTTLRYSVQL 409 (456)
T ss_dssp HHHHHH--HTCCBCHHHHHHHHHHHHHSCHHHHHHT
T ss_pred HHHHHH--hCCCCCHHHHHHHHHHccCCCHHHHHHH
Confidence 877621 11224466778888888 8888644433
No 77
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=98.00 E-value=1.4e-05 Score=77.81 Aligned_cols=48 Identities=19% Similarity=0.228 Sum_probs=38.0
Q ss_pred CCceeccchhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhh
Q 009306 188 EDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKI 235 (538)
Q Consensus 188 ~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (538)
+.++|+...+.++.+.+..-......+.|+|++|+|||++|+.+++..
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 458999999999888776522233458899999999999999999864
No 78
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.98 E-value=2.9e-06 Score=72.77 Aligned_cols=49 Identities=14% Similarity=0.128 Sum_probs=34.7
Q ss_pred CCceeccchhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhc
Q 009306 188 EDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKIS 236 (538)
Q Consensus 188 ~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (538)
-.++|++..++++.+.+..-......+.|+|++|+|||++|+.+++...
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~~ 52 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNGT 52 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTTS
T ss_pred cCceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCC
Confidence 4578999999988887654112223488999999999999998887643
No 79
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.92 E-value=5.2e-05 Score=82.56 Aligned_cols=173 Identities=16% Similarity=0.169 Sum_probs=98.6
Q ss_pred CCceeccchhHHHHHhhhc-----------CCCCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhhcCC
Q 009306 188 EDLVGVRLPMKEIESLLRT-----------GSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEETCR 256 (538)
Q Consensus 188 ~~~vGR~~~l~~l~~~L~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 256 (538)
.++.|.+..+++|.+++.- +....+-|.++|++|+|||+||++++.+....| +.+. ..+....
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~---~~v~-~~~l~sk-- 277 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFF---FLIN-GPEIMSK-- 277 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEE---EEEE-HHHHHSS--
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeE---EEEE-hHHhhcc--
Confidence 4678999999888876531 123356799999999999999999999875442 2222 2111100
Q ss_pred hHHHHHHHHHHHhcCCCCCCchhhcHHHHHHHhcCCCeEEEEecCCCh-------------HHHHHHhcCcCCC--CCCC
Q 009306 257 LGDLRQQLLSTLLNDGNVKNFLNTDLNFQSRRLTRKKVLIVFDDVDHP-------------RQIKILVGRLDLF--ASGS 321 (538)
Q Consensus 257 ~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-------------~~~~~l~~~l~~~--~~~~ 321 (538)
....................|.+|+||++|.. ..+..++..+... ..+.
T Consensus 278 ----------------~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V 341 (806)
T 3cf2_A 278 ----------------LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHV 341 (806)
T ss_dssp ----------------CTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCE
T ss_pred ----------------cchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCE
Confidence 00011111112222333567999999999642 1123333222211 2234
Q ss_pred EEEEeccchhhh-hhc----CCCeeEEcCCCCHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhcCCc
Q 009306 322 RIIITTRDRQVL-ANC----GVDEVYQMEELVHDDALRLFSRHAFGGDHPHESHTELACKTIKYARGVP 385 (538)
Q Consensus 322 ~iiiTtR~~~~~-~~~----~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 385 (538)
.||.||.....+ +.+ .....++++..+.++-.++|..+..+.....+ .....+++.+.|+.
T Consensus 342 ~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~d---vdl~~lA~~T~Gfs 407 (806)
T 3cf2_A 342 IVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADD---VDLEQVANETHGHV 407 (806)
T ss_dssp EEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTT---CCHHHHHHHCCSCC
T ss_pred EEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcc---cCHHHHHHhcCCCC
Confidence 455555544222 111 34568999999999999999877632211111 12456788887774
No 80
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.83 E-value=0.00043 Score=65.19 Aligned_cols=174 Identities=16% Similarity=0.161 Sum_probs=88.1
Q ss_pred CCCCceeccchhHHHHHhhhc----------CCCCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhhcC
Q 009306 186 ENEDLVGVRLPMKEIESLLRT----------GSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEETC 255 (538)
Q Consensus 186 ~~~~~vGR~~~l~~l~~~L~~----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~ 255 (538)
..++++|.+....++..+... +..-.+-+.|+|++|+|||||++.++..... ..+.+. .......
T Consensus 14 ~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~---~~i~~~-~~~~~~~- 88 (254)
T 1ixz_A 14 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV---PFITAS-GSDFVEM- 88 (254)
T ss_dssp CGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTC---CEEEEE-HHHHHHS-
T ss_pred CHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCC---CEEEee-HHHHHHH-
Confidence 335678887766666554321 0011223899999999999999999987652 223332 1111000
Q ss_pred ChHHHHHHHHHHHhcCCCCCCchhhcHHHHHHHh-cCCCeEEEEecCCCh----------------HHHHHHhcCcCCCC
Q 009306 256 RLGDLRQQLLSTLLNDGNVKNFLNTDLNFQSRRL-TRKKVLIVFDDVDHP----------------RQIKILVGRLDLFA 318 (538)
Q Consensus 256 ~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~----------------~~~~~l~~~l~~~~ 318 (538)
... ........+.+.. ...+.++++||++.. ..+..+...+....
T Consensus 89 ~~~------------------~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~ 150 (254)
T 1ixz_A 89 FVG------------------VGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE 150 (254)
T ss_dssp CTT------------------HHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCC
T ss_pred Hhh------------------HHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCC
Confidence 000 0011111222222 235689999998422 11223332222111
Q ss_pred -CC-CEEEEeccchhhhh-----hcCCCeeEEcCCCCHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhcCCc
Q 009306 319 -SG-SRIIITTRDRQVLA-----NCGVDEVYQMEELVHDDALRLFSRHAFGGDHPHESHTELACKTIKYARGVP 385 (538)
Q Consensus 319 -~~-~~iiiTtR~~~~~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 385 (538)
.. ..++.+|.....+. .......+.++..+.++-.+++..+.-+.....+ .....+++.+.|+-
T Consensus 151 ~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~---~~~~~la~~~~G~~ 221 (254)
T 1ixz_A 151 KDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAED---VDLALLAKRTPGFV 221 (254)
T ss_dssp TTCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTT---CCHHHHHHTCTTCC
T ss_pred CCCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcc---cCHHHHHHHcCCCC
Confidence 22 23444555544322 1134567899999999888888776522111111 11345666676654
No 81
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.80 E-value=3.8e-05 Score=84.62 Aligned_cols=148 Identities=15% Similarity=0.174 Sum_probs=83.3
Q ss_pred CCceeccchhHHHHHhhhcCC-------CCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhhcCChHHH
Q 009306 188 EDLVGVRLPMKEIESLLRTGS-------TNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEETCRLGDL 260 (538)
Q Consensus 188 ~~~vGR~~~l~~l~~~L~~~~-------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l 260 (538)
..++|.+..++.+...+.... .....+.++|++|+|||++|+.+++.........+.+. ..+........
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~-~s~~~~~~~~~-- 567 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRID-MSEYMEKHSTS-- 567 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEE-GGGGCSSCCCC--
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEe-chhcccccccc--
Confidence 568999998888877665311 11236999999999999999999987633222233333 22221111110
Q ss_pred HHHHHHHHhcCCCCCCchhhcHHHHHHHhcCCCeEEEEecCCCh--HHHHHHhcCcCC-----------CCCCCEEEEec
Q 009306 261 RQQLLSTLLNDGNVKNFLNTDLNFQSRRLTRKKVLIVFDDVDHP--RQIKILVGRLDL-----------FASGSRIIITT 327 (538)
Q Consensus 261 ~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~l~~-----------~~~~~~iiiTt 327 (538)
.......++ .....+|+||+++.. +....++..+.. ...+.+||+||
T Consensus 568 -----------------~~~l~~~~~---~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tt 627 (758)
T 3pxi_A 568 -----------------GGQLTEKVR---RKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTS 627 (758)
T ss_dssp --------------------CHHHHH---HCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEE
T ss_pred -----------------cchhhHHHH---hCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeC
Confidence 111112221 134459999999643 333333322211 12356788888
Q ss_pred cch-----------------hhhhhcCCCeeEEcCCCCHHHHHHHHHhhh
Q 009306 328 RDR-----------------QVLANCGVDEVYQMEELVHDDALRLFSRHA 360 (538)
Q Consensus 328 R~~-----------------~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 360 (538)
... .+.. ....++.+++++.++..+++....
T Consensus 628 n~~~~~~~~~~~~~~~~f~p~l~~--Rl~~~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 628 NVGASEKDKVMGELKRAFRPEFIN--RIDEIIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp SSSTTCCHHHHHHHHHHSCHHHHT--TSSEEEECC--CHHHHHHHHHHHH
T ss_pred CCChhhHHHHHHHHHhhCCHHHHh--hCCeEEecCCCCHHHHHHHHHHHH
Confidence 621 1111 234688999999999998887655
No 82
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.75 E-value=5.9e-05 Score=68.49 Aligned_cols=60 Identities=20% Similarity=0.170 Sum_probs=39.7
Q ss_pred CCCceeccc----hhHHHHHhhhcCCCC--ceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEe
Q 009306 187 NEDLVGVRL----PMKEIESLLRTGSTN--VYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFAR 246 (538)
Q Consensus 187 ~~~~vGR~~----~l~~l~~~L~~~~~~--~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 246 (538)
.++|++... .++.+..++...... .+.+.|+|++|+|||+||+.++.........++++.
T Consensus 24 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~ 89 (202)
T 2w58_A 24 LSDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVY 89 (202)
T ss_dssp TTSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred HhhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 356666543 334445555433221 267999999999999999999998765544455554
No 83
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=97.74 E-value=3.2e-05 Score=62.19 Aligned_cols=72 Identities=10% Similarity=0.059 Sum_probs=52.8
Q ss_pred CCcccEEEcCcccccccchHHHHHHHHhhCCCeeEeeCCCCCCCcchHHHHHHHHhcceEEEEeccCcccchhhHHHHHH
Q 009306 15 EIKYDVFLSFGGEDTRESFTSHLYSALSRETVETFIDDDLRRGDEISQSLLDAIEASSISIIIFSESYASSRWCLDELLK 94 (538)
Q Consensus 15 ~~~~dvFiSy~~~D~~~~~~~~l~~~l~~~g~~~~~d~~~~~g~~~~~~i~~~i~~s~~~i~v~S~~y~~s~~c~~El~~ 94 (538)
..+|.+||||+.+| . ...|...|...|+..- | ..|+.|+++|++.++....|+||..|+..
T Consensus 2 ~~~~~lFISh~~~d-~---~~~L~~~l~~~~f~~~-~--------------~~I~~~~~vIvL~G~~t~~s~wv~~EI~~ 62 (111)
T 1eiw_A 2 TAEIRLYITEGEVE-D---YRVFLERLEQSGLEWR-P--------------ATPEDADAVIVLAGLWGTRRDEILGAVDL 62 (111)
T ss_dssp CCCEEEEECCCCSH-H---HHHHHHHHHHHCSCEE-E--------------CCSSSCSEEEEEGGGTTTSHHHHHHHHHH
T ss_pred CceEEEEEecccHh-H---HHHHHHHHhCCCCeee-c--------------CccccCCEEEEEeCCCcCCChHHHHHHHH
Confidence 35799999999998 2 4445555545555332 2 66889999999999999999999999986
Q ss_pred HHHHHhhcCCeEEEE
Q 009306 95 ILECKKEYAQIVVPV 109 (538)
Q Consensus 95 ~~~~~~~~~~~v~pv 109 (538)
|.+ .+.+++-|
T Consensus 63 A~~----~gkpIigV 73 (111)
T 1eiw_A 63 ARK----SSKPIITV 73 (111)
T ss_dssp HTT----TTCCEEEE
T ss_pred HHH----cCCCEEEE
Confidence 664 34445544
No 84
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.74 E-value=0.00096 Score=63.77 Aligned_cols=175 Identities=15% Similarity=0.158 Sum_probs=90.6
Q ss_pred CCCCCceeccchhHHHHHhhhc----------CCCCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhhc
Q 009306 185 SENEDLVGVRLPMKEIESLLRT----------GSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEET 254 (538)
Q Consensus 185 ~~~~~~vGR~~~l~~l~~~L~~----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~ 254 (538)
...++++|.+....++..+... +..-.+-+.|+|++|+|||||++.++..... ..+.+. .......
T Consensus 37 ~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~---~~i~~~-~~~~~~~ 112 (278)
T 1iy2_A 37 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV---PFITAS-GSDFVEM 112 (278)
T ss_dssp CCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTC---CEEEEE-HHHHHHS
T ss_pred CCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCC---CEEEec-HHHHHHH
Confidence 3446788888777776654321 0011223899999999999999999987652 223332 1111000
Q ss_pred CChHHHHHHHHHHHhcCCCCCCchhhcHHHHHHHh-cCCCeEEEEecCCCh----------------HHHHHHhcCcCCC
Q 009306 255 CRLGDLRQQLLSTLLNDGNVKNFLNTDLNFQSRRL-TRKKVLIVFDDVDHP----------------RQIKILVGRLDLF 317 (538)
Q Consensus 255 ~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~----------------~~~~~l~~~l~~~ 317 (538)
... ........+.+.. ...+.++++||++.. ..+..+...+...
T Consensus 113 -~~~------------------~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg 173 (278)
T 1iy2_A 113 -FVG------------------VGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGF 173 (278)
T ss_dssp -TTT------------------HHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTC
T ss_pred -Hhh------------------HHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCC
Confidence 000 0001111122222 245789999998421 1122333333221
Q ss_pred C-CC-CEEEEeccchhhh-----hhcCCCeeEEcCCCCHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhcCCc
Q 009306 318 A-SG-SRIIITTRDRQVL-----ANCGVDEVYQMEELVHDDALRLFSRHAFGGDHPHESHTELACKTIKYARGVP 385 (538)
Q Consensus 318 ~-~~-~~iiiTtR~~~~~-----~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 385 (538)
. .. ..++.+|.....+ ........+.++..+.++-.+++..+.-......+ .....++..+.|+.
T Consensus 174 ~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~---~~~~~la~~~~G~~ 245 (278)
T 1iy2_A 174 EKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAED---VDLALLAKRTPGFV 245 (278)
T ss_dssp CTTCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTT---CCHHHHHHTCTTCC
T ss_pred CCCCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcc---cCHHHHHHHcCCCC
Confidence 1 12 2334455444332 11234568899999999888888876522111111 12345667777765
No 85
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.72 E-value=0.00021 Score=69.04 Aligned_cols=29 Identities=34% Similarity=0.568 Sum_probs=24.6
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhhccc
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKISRH 238 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 238 (538)
..+.+.|+|++|+|||+||+.+++.....
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l~~~ 63 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKMGIN 63 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHHTCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 35578999999999999999999987443
No 86
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=97.72 E-value=0.00023 Score=71.40 Aligned_cols=26 Identities=23% Similarity=0.313 Sum_probs=22.8
Q ss_pred eEEEEeccCCCchhHHHHHHHHhhcc
Q 009306 212 YKLGIWGIGGIGKTTIAGAIFNKISR 237 (538)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~~~~ 237 (538)
..+.|+|++|+|||++|+.+++.+..
T Consensus 73 ~~ill~Gp~GtGKT~la~~la~~l~~ 98 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMAQTLAKHLDI 98 (376)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhCC
Confidence 45899999999999999999988743
No 87
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.70 E-value=3.1e-05 Score=66.68 Aligned_cols=37 Identities=16% Similarity=0.239 Sum_probs=27.5
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEe
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFAR 246 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 246 (538)
....++|+|++|+|||||++.++..........+++.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~ 71 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYID 71 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEc
Confidence 3457999999999999999999987654322245554
No 88
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.68 E-value=0.00029 Score=77.72 Aligned_cols=152 Identities=18% Similarity=0.225 Sum_probs=86.2
Q ss_pred CCCceeccchhHHHHHhhhc-----------CCCCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhhcC
Q 009306 187 NEDLVGVRLPMKEIESLLRT-----------GSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEETC 255 (538)
Q Consensus 187 ~~~~vGR~~~l~~l~~~L~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~ 255 (538)
-.+++|.+..+++|.+++.. +......+.|+|++|+||||||+.++......| +.+. ..+... .
T Consensus 203 ~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~---i~v~-~~~l~~-~ 277 (806)
T 1ypw_A 203 YDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFF---FLIN-GPEIMS-K 277 (806)
T ss_dssp GGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEE---EEEE-HHHHSS-S
T ss_pred HHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcE---EEEE-chHhhh-h
Confidence 35789999999999887753 223455699999999999999999998765433 2222 111100 0
Q ss_pred ChHHHHHHHHHHHhcCCCCCCchhhcHHHHHHHhcCCCeEEEEecCCCh-------------HHHHHHhcCcCCC--CCC
Q 009306 256 RLGDLRQQLLSTLLNDGNVKNFLNTDLNFQSRRLTRKKVLIVFDDVDHP-------------RQIKILVGRLDLF--ASG 320 (538)
Q Consensus 256 ~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-------------~~~~~l~~~l~~~--~~~ 320 (538)
..... .......+.......+.++++|+++.. .....+...+... ..+
T Consensus 278 ~~g~~-----------------~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~ 340 (806)
T 1ypw_A 278 LAGES-----------------ESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAH 340 (806)
T ss_dssp STTHH-----------------HHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSC
T ss_pred hhhhH-----------------HHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhccccc
Confidence 00000 011111122222346789999998421 1122222211111 234
Q ss_pred CEEEEeccchhhhh-hc----CCCeeEEcCCCCHHHHHHHHHhhh
Q 009306 321 SRIIITTRDRQVLA-NC----GVDEVYQMEELVHDDALRLFSRHA 360 (538)
Q Consensus 321 ~~iiiTtR~~~~~~-~~----~~~~~~~l~~L~~~ea~~Lf~~~~ 360 (538)
..+|.+|.....+. .+ .....+.+...+.++-.+++...+
T Consensus 341 v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~ 385 (806)
T 1ypw_A 341 VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHT 385 (806)
T ss_dssp CEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTT
T ss_pred EEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHH
Confidence 55666665432221 11 233567889999999999988776
No 89
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.66 E-value=0.0014 Score=67.69 Aligned_cols=172 Identities=15% Similarity=0.159 Sum_probs=93.2
Q ss_pred CCCCCceeccchhHHHHHhhhc--C--------CCCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhhc
Q 009306 185 SENEDLVGVRLPMKEIESLLRT--G--------STNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEET 254 (538)
Q Consensus 185 ~~~~~~vGR~~~l~~l~~~L~~--~--------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~ 254 (538)
....+++|.+..+.++.++... . ..-.+-+.|+|++|+|||+||+.++...... .+.+. .......
T Consensus 28 ~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~---~i~i~-g~~~~~~ 103 (499)
T 2dhr_A 28 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVP---FITAS-GSDFVEM 103 (499)
T ss_dssp CCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCC---EEEEE-GGGGTSS
T ss_pred CCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCC---EEEEe-hhHHHHh
Confidence 3446788988877777665421 1 1112348999999999999999999876522 22333 1111100
Q ss_pred CChHHHHHHHHHHHhcCCCCCCchhhcHHHHHHHh----cCCCeEEEEecCCCh----------------HHHHHHhcCc
Q 009306 255 CRLGDLRQQLLSTLLNDGNVKNFLNTDLNFQSRRL----TRKKVLIVFDDVDHP----------------RQIKILVGRL 314 (538)
Q Consensus 255 ~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~~l----~~k~~LlVlDdv~~~----------------~~~~~l~~~l 314 (538)
.... ....+...+ ...+.++++|+++.. ..+..++..+
T Consensus 104 -~~g~---------------------~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~L 161 (499)
T 2dhr_A 104 -FVGV---------------------GAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEM 161 (499)
T ss_dssp -CTTH---------------------HHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHG
T ss_pred -hhhh---------------------HHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHh
Confidence 0000 011111111 124689999999531 1223333333
Q ss_pred CCC--CCCCEEEEeccchhhhhh-----cCCCeeEEcCCCCHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhcCCc
Q 009306 315 DLF--ASGSRIIITTRDRQVLAN-----CGVDEVYQMEELVHDDALRLFSRHAFGGDHPHESHTELACKTIKYARGVP 385 (538)
Q Consensus 315 ~~~--~~~~~iiiTtR~~~~~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 385 (538)
..+ .....++.+|.....+.. ......+.++..+.++-.+++..++-+.....+ .....++..+.|+.
T Consensus 162 dg~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~d---v~l~~lA~~t~G~~ 236 (499)
T 2dhr_A 162 DGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAED---VDLALLAKRTPGFV 236 (499)
T ss_dssp GGCCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCS---STTHHHHTTSCSCC
T ss_pred cccccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChH---HHHHHHHHhcCCCC
Confidence 221 223445556655544321 124468899999999999988877522111111 11445677777776
No 90
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.57 E-value=0.0019 Score=61.56 Aligned_cols=124 Identities=19% Similarity=0.222 Sum_probs=68.2
Q ss_pred EEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhhcCChHHHHHHHHHHHhcCCCCCCchhhcHHHHHHHh-cCC
Q 009306 214 LGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEETCRLGDLRQQLLSTLLNDGNVKNFLNTDLNFQSRRL-TRK 292 (538)
Q Consensus 214 v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~~l-~~k 292 (538)
++|+|++|+|||||++.++...... .+.+.. .+... ...... ......+.+.. ...
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~~~---~i~i~g-~~l~~-~~~~~~------------------~~~i~~vf~~a~~~~ 103 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESGLN---FISVKG-PELLN-MYVGES------------------ERAVRQVFQRAKNSA 103 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTTCE---EEEEET-TTTCS-STTHHH------------------HHHHHHHHHHHHHTC
T ss_pred EEEECCCCCcHHHHHHHHHHHcCCC---EEEEEc-HHHHh-hhhhHH------------------HHHHHHHHHHHHhcC
Confidence 9999999999999999999876432 233331 11100 000110 01111122221 346
Q ss_pred CeEEEEecCCCh-------------HHHHHHhcCcCCC--CCCCEEEEeccchhhhhh-----cCCCeeEEcCCCCHHHH
Q 009306 293 KVLIVFDDVDHP-------------RQIKILVGRLDLF--ASGSRIIITTRDRQVLAN-----CGVDEVYQMEELVHDDA 352 (538)
Q Consensus 293 ~~LlVlDdv~~~-------------~~~~~l~~~l~~~--~~~~~iiiTtR~~~~~~~-----~~~~~~~~l~~L~~~ea 352 (538)
+.++++|+++.. .....+...+... ....-++.+|.....+.. ...+..+.++..+.++-
T Consensus 104 p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r 183 (274)
T 2x8a_A 104 PCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADR 183 (274)
T ss_dssp SEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHH
T ss_pred CCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHH
Confidence 789999999642 1122222222211 122335555655544321 14567888999999999
Q ss_pred HHHHHhhh
Q 009306 353 LRLFSRHA 360 (538)
Q Consensus 353 ~~Lf~~~~ 360 (538)
.+++....
T Consensus 184 ~~il~~~~ 191 (274)
T 2x8a_A 184 LAILKTIT 191 (274)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 99998765
No 91
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.36 E-value=0.00035 Score=76.92 Aligned_cols=49 Identities=16% Similarity=0.260 Sum_probs=37.8
Q ss_pred CCceeccchhHHHHHhhhc---C----CCCceEEEEeccCCCchhHHHHHHHHhhc
Q 009306 188 EDLVGVRLPMKEIESLLRT---G----STNVYKLGIWGIGGIGKTTIAGAIFNKIS 236 (538)
Q Consensus 188 ~~~vGR~~~l~~l~~~L~~---~----~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (538)
..++|.+..++.+...+.. + ......+.++|++|+|||++|+.+++...
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~ 513 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG 513 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhc
Confidence 4688999888888776643 1 11234689999999999999999998873
No 92
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.36 E-value=0.00073 Score=71.07 Aligned_cols=51 Identities=27% Similarity=0.336 Sum_probs=35.8
Q ss_pred CceeccchhHHHHHhhhc----CCCCceEEEEeccCCCchhHHHHHHHHhhccce
Q 009306 189 DLVGVRLPMKEIESLLRT----GSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHF 239 (538)
Q Consensus 189 ~~vGR~~~l~~l~~~L~~----~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f 239 (538)
+++|.+...+.+.+.+.- .......++|+|++|+||||||+.++......|
T Consensus 82 di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~ 136 (543)
T 3m6a_A 82 EHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRKF 136 (543)
T ss_dssp HCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTCEE
T ss_pred HhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCCCe
Confidence 367777766666543321 112355799999999999999999998875443
No 93
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.30 E-value=0.0007 Score=61.99 Aligned_cols=45 Identities=22% Similarity=0.107 Sum_probs=31.7
Q ss_pred HHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEe
Q 009306 199 EIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFAR 246 (538)
Q Consensus 199 ~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 246 (538)
.|..++..+-....++.|.|++|+|||||+..++. ..-..++|+.
T Consensus 8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~---~~~~~v~~i~ 52 (220)
T 2cvh_A 8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL---LSGKKVAYVD 52 (220)
T ss_dssp HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH---HHCSEEEEEE
T ss_pred HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH---HcCCcEEEEE
Confidence 44555543334556899999999999999999988 2233556655
No 94
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.24 E-value=0.00047 Score=63.74 Aligned_cols=49 Identities=18% Similarity=0.251 Sum_probs=32.4
Q ss_pred HHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEe
Q 009306 198 KEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFAR 246 (538)
Q Consensus 198 ~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 246 (538)
..|..++..+-....+++|.|++|+|||||++.++......-..+.|+.
T Consensus 10 ~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~ 58 (235)
T 2w0m_A 10 LDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVT 58 (235)
T ss_dssp HHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred hHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 3444444322234467999999999999999999976544333455544
No 95
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.22 E-value=0.0018 Score=72.25 Aligned_cols=50 Identities=18% Similarity=0.336 Sum_probs=38.3
Q ss_pred CCceeccchhHHHHHhhhcC-------CCCceEEEEeccCCCchhHHHHHHHHhhcc
Q 009306 188 EDLVGVRLPMKEIESLLRTG-------STNVYKLGIWGIGGIGKTTIAGAIFNKISR 237 (538)
Q Consensus 188 ~~~vGR~~~l~~l~~~L~~~-------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 237 (538)
..++|.+..++.+...+... ......+.|+|++|+|||++|+.+++....
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~ 614 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFD 614 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHS
T ss_pred cccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 35799999888887766431 112357999999999999999999987643
No 96
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.19 E-value=0.0011 Score=65.46 Aligned_cols=99 Identities=19% Similarity=0.087 Sum_probs=57.9
Q ss_pred chhHHHHHhhh-cCCCCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhhcCChHHHHHHHHHHHhcCCC
Q 009306 195 LPMKEIESLLR-TGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEETCRLGDLRQQLLSTLLNDGN 273 (538)
Q Consensus 195 ~~l~~l~~~L~-~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~ 273 (538)
.-...|...|. .+-....++.|.|++|+|||||+..++......-..++|+.. ....... .. ..++....
T Consensus 44 TG~~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~----E~s~~~~-ra----~rlgv~~~ 114 (356)
T 3hr8_A 44 TGSLAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDA----EHALDPV-YA----KNLGVDLK 114 (356)
T ss_dssp CSCHHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEES----SCCCCHH-HH----HHHTCCGG
T ss_pred CCCHHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEec----ccccchH-HH----HHcCCchh
Confidence 34456777776 444556789999999999999999999876544445667652 1111111 22 22222111
Q ss_pred -----CCCchhhcHHHHHHHhc-CCCeEEEEecCC
Q 009306 274 -----VKNFLNTDLNFQSRRLT-RKKVLIVFDDVD 302 (538)
Q Consensus 274 -----~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~ 302 (538)
...+.++....+...+. .+.-++|+|.+.
T Consensus 115 ~l~i~~~~~~e~~l~~~~~l~~~~~~dlvVIDSi~ 149 (356)
T 3hr8_A 115 SLLISQPDHGEQALEIVDELVRSGVVDLIVVDSVA 149 (356)
T ss_dssp GCEEECCSSHHHHHHHHHHHHHTSCCSEEEEECTT
T ss_pred hhhhhhccCHHHHHHHHHHHhhhcCCCeEEehHhh
Confidence 01334444444444443 456789999874
No 97
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=97.18 E-value=0.0017 Score=67.21 Aligned_cols=46 Identities=17% Similarity=0.130 Sum_probs=38.0
Q ss_pred CCceeccchhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhcc
Q 009306 188 EDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISR 237 (538)
Q Consensus 188 ~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 237 (538)
+.++|++..++.+...+..+. .+.|+|++|+|||+||+.++.....
T Consensus 22 ~~ivGq~~~i~~l~~al~~~~----~VLL~GpPGtGKT~LAraLa~~l~~ 67 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSGE----SVFLLGPPGIAKSLIARRLKFAFQN 67 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHTC----EEEEECCSSSSHHHHHHHGGGGBSS
T ss_pred hhhHHHHHHHHHHHHHHhcCC----eeEeecCchHHHHHHHHHHHHHHhh
Confidence 468999999988887776432 4899999999999999999987643
No 98
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=97.06 E-value=0.0072 Score=59.53 Aligned_cols=165 Identities=9% Similarity=-0.032 Sum_probs=102.1
Q ss_pred HHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhcc-ceeeEEEEeehhhhhhcCChHHHHHHHHHHHhcCCCCCCc
Q 009306 199 EIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISR-HFSGSYFARNVREAEETCRLGDLRQQLLSTLLNDGNVKNF 277 (538)
Q Consensus 199 ~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~ 277 (538)
++...+. + .-.++..++|+.|.||++.+..+...+.. .|.....+. .. ....+..+...+..
T Consensus 8 ~l~~~l~-~-~~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~---~~~~~~~l~~~~~~----------- 70 (343)
T 1jr3_D 8 QLRAQLN-E-GLRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFS-ID---PNTDWNAIFSLCQA----------- 70 (343)
T ss_dssp THHHHHH-H-CCCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEE-CC---TTCCHHHHHHHHHH-----------
T ss_pred HHHHHHh-c-CCCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEE-ec---CCCCHHHHHHHhcC-----------
Confidence 3444454 2 34568999999999999999999886542 232211111 11 11333333322211
Q ss_pred hhhcHHHHHHHhcCCCeEEEEecCCC---hHHHHHHhcCcCCCCCCCEEEEeccc-------hhhhhhc-CCCeeEEcCC
Q 009306 278 LNTDLNFQSRRLTRKKVLIVFDDVDH---PRQIKILVGRLDLFASGSRIIITTRD-------RQVLANC-GVDEVYQMEE 346 (538)
Q Consensus 278 ~~~~~~~l~~~l~~k~~LlVlDdv~~---~~~~~~l~~~l~~~~~~~~iiiTtR~-------~~~~~~~-~~~~~~~l~~ 346 (538)
.-+.+.+-++|+|+++. ....+.+...+....+++.+|+++.. ..+...+ .....++..+
T Consensus 71 ---------~plf~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~ 141 (343)
T 1jr3_D 71 ---------MSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQT 141 (343)
T ss_dssp ---------HHHCCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECC
T ss_pred ---------cCCccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeC
Confidence 11234566889999865 34566666665554567777766543 2344443 3346899999
Q ss_pred CCHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhcCCcHHHHHH
Q 009306 347 LVHDDALRLFSRHAFGGDHPHESHTELACKTIKYARGVPLALEVL 391 (538)
Q Consensus 347 L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~ 391 (538)
++..+..+.+...+- ........+.+..+++.++|.+..+...
T Consensus 142 l~~~~l~~~l~~~~~--~~g~~i~~~a~~~l~~~~~gdl~~~~~e 184 (343)
T 1jr3_D 142 PEQAQLPRWVAARAK--QLNLELDDAANQVLCYCYEGNLLALAQA 184 (343)
T ss_dssp CCTTHHHHHHHHHHH--HTTCEECHHHHHHHHHSSTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHH--HcCCCCCHHHHHHHHHHhchHHHHHHHH
Confidence 999999988888762 2223455778889999999998776543
No 99
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.02 E-value=0.0048 Score=60.02 Aligned_cols=54 Identities=19% Similarity=0.107 Sum_probs=38.2
Q ss_pred eccchhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEe
Q 009306 192 GVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFAR 246 (538)
Q Consensus 192 GR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 246 (538)
|-..-+..|..++ .+-....++.|.|.+|+||||||..++.....+...++|+.
T Consensus 50 ~i~TG~~~LD~~l-gGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~s 103 (315)
T 3bh0_A 50 GVPSGFTELDRMT-YGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS 103 (315)
T ss_dssp SBCCSCHHHHHHH-SSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred CccCChHHHHhhc-CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 3444455566666 44455678999999999999999999987654435566655
No 100
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.00 E-value=0.0012 Score=58.76 Aligned_cols=117 Identities=15% Similarity=0.047 Sum_probs=60.0
Q ss_pred EEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhhcCChHHHHHHHHHHH---hc-CCCCC-------Cchhhc
Q 009306 213 KLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEETCRLGDLRQQLLSTL---LN-DGNVK-------NFLNTD 281 (538)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l---~~-~~~~~-------~~~~~~ 281 (538)
.|.|++..|.||||.|..++-+...+-..+.++...... ...+...+++.+.-.+ +. -.... ......
T Consensus 30 ~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~-~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~ 108 (196)
T 1g5t_A 30 IIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGT-WPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAV 108 (196)
T ss_dssp CEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCS-SCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCC-CCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHH
Confidence 466777777999999999998877665556666422210 1112223333321000 00 00000 111223
Q ss_pred HHHHHHHhcCC-CeEEEEecCCC-----hHHHHHHhcCcCCCCCCCEEEEeccch
Q 009306 282 LNFQSRRLTRK-KVLIVFDDVDH-----PRQIKILVGRLDLFASGSRIIITTRDR 330 (538)
Q Consensus 282 ~~~l~~~l~~k-~~LlVlDdv~~-----~~~~~~l~~~l~~~~~~~~iiiTtR~~ 330 (538)
....++.+... -=|||||++.. .-..+.++..+........||+|+|..
T Consensus 109 l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 109 WQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred HHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 34444555444 45999999832 111222222222335678899999986
No 101
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.99 E-value=0.002 Score=62.48 Aligned_cols=51 Identities=18% Similarity=0.255 Sum_probs=34.7
Q ss_pred hhHHHHHhhhcCCC-CceEEEEeccCCCchhHHHHHHHHhhc-cceeeEEEEe
Q 009306 196 PMKEIESLLRTGST-NVYKLGIWGIGGIGKTTIAGAIFNKIS-RHFSGSYFAR 246 (538)
Q Consensus 196 ~l~~l~~~L~~~~~-~~~~v~I~G~~GiGKTtLa~~~~~~~~-~~f~~~~~~~ 246 (538)
.++.+.+++..... ....+.|+|++|+|||+||..+++... .....+.++.
T Consensus 136 ~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~ 188 (308)
T 2qgz_A 136 AFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLH 188 (308)
T ss_dssp HHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEE
T ss_pred HHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 44445556654221 246789999999999999999999876 5444455554
No 102
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.93 E-value=0.0026 Score=61.03 Aligned_cols=49 Identities=14% Similarity=0.049 Sum_probs=35.3
Q ss_pred hHHHHHhhh----cCCCCceEEEEeccCCCchhHHHHHHHHhhccc--eeeEEEEe
Q 009306 197 MKEIESLLR----TGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRH--FSGSYFAR 246 (538)
Q Consensus 197 l~~l~~~L~----~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~--f~~~~~~~ 246 (538)
...|...|. .+-... ++.|.|++|+|||||+.+++...... -..++|++
T Consensus 11 i~~LD~~LGg~~~GGl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId 65 (333)
T 3io5_A 11 IPMMNIALSGEITGGMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYD 65 (333)
T ss_dssp CHHHHHHHHSSTTCCBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred CHHHHHHhCCCCCCCCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 345666666 443444 78999999999999999998876554 34567766
No 103
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.90 E-value=0.0007 Score=65.23 Aligned_cols=25 Identities=24% Similarity=0.193 Sum_probs=22.1
Q ss_pred CceEEEEeccCCCchhHHHHHHHHh
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNK 234 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~ 234 (538)
..+++.|+|++|+|||+||.+++..
T Consensus 122 ~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 3456889999999999999999886
No 104
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.90 E-value=0.0011 Score=72.35 Aligned_cols=171 Identities=19% Similarity=0.234 Sum_probs=78.9
Q ss_pred CCceeccchhHHHHHhhhc-----------CCCCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhhcCC
Q 009306 188 EDLVGVRLPMKEIESLLRT-----------GSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEETCR 256 (538)
Q Consensus 188 ~~~vGR~~~l~~l~~~L~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 256 (538)
..+.|.+...++|.+.+.- +....+-+.++|++|+|||.||++++.+....| +....
T Consensus 477 ~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f----~~v~~-------- 544 (806)
T 3cf2_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANF----ISIKG-------- 544 (806)
T ss_dssp TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEE----EECCH--------
T ss_pred HHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCce----EEecc--------
Confidence 4566777777777665432 112244588999999999999999999865432 21111
Q ss_pred hHHHHHHHHHHHhcCCCCCCchhhcHHHHHHH-hcCCCeEEEEecCCCh----------------HHHHHHhcCcCCCCC
Q 009306 257 LGDLRQQLLSTLLNDGNVKNFLNTDLNFQSRR-LTRKKVLIVFDDVDHP----------------RQIKILVGRLDLFAS 319 (538)
Q Consensus 257 ~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~----------------~~~~~l~~~l~~~~~ 319 (538)
. .+++...+ .. +..+..+.+. -...|++|+||++|.. ..+..|+..+.....
T Consensus 545 -~----~l~s~~vG-----es-e~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~ 613 (806)
T 3cf2_A 545 -P----ELLTMWFG-----ES-EANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMST 613 (806)
T ss_dssp -H----HHHTTTCS-----SC-HHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCS
T ss_pred -c----hhhccccc-----hH-HHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCC
Confidence 1 11111111 11 2222222222 2457999999999632 113344433332222
Q ss_pred --CCEEEEeccchhh-----hhhcCCCeeEEcCCCCHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhcCC
Q 009306 320 --GSRIIITTRDRQV-----LANCGVDEVYQMEELVHDDALRLFSRHAFGGDHPHESHTELACKTIKYARGV 384 (538)
Q Consensus 320 --~~~iiiTtR~~~~-----~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~ 384 (538)
+.-||-||..... +..-+.+..+.++..+.++-.++|..+.-+.....+ . ....+++.+.|+
T Consensus 614 ~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~--~-dl~~la~~t~g~ 682 (806)
T 3cf2_A 614 KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKD--V-DLEFLAKMTNGF 682 (806)
T ss_dssp SSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC----------------
T ss_pred CCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCCC--C-CHHHHHHhCCCC
Confidence 2233334433322 221234667888888888888888776622111111 1 134556666654
No 105
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.88 E-value=0.0011 Score=60.93 Aligned_cols=110 Identities=15% Similarity=0.002 Sum_probs=57.9
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhhcCChHHHHHHHHHHHhcCCCC-C-CchhhcHHHHHH
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEETCRLGDLRQQLLSTLLNDGNV-K-NFLNTDLNFQSR 287 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~-~-~~~~~~~~~l~~ 287 (538)
...++.|+|+.|+||||++..++.+...+...+..+....+. . +.. ++.+.++..... . ....+....+.+
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~--r-~~~----~i~srlG~~~~~~~~~~~~~i~~~i~~ 83 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDT--R-SIR----NIQSRTGTSLPSVEVESAPEILNYIMS 83 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCG--G-GCS----SCCCCCCCSSCCEEESSTHHHHHHHHS
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCc--h-HHH----HHHHhcCCCccccccCCHHHHHHHHHH
Confidence 356899999999999999999998876554444444311111 0 100 111222111000 0 122233333333
Q ss_pred HhcC-CCeEEEEecCCC--hHHHHHHhcCcCCCCCCCEEEEeccc
Q 009306 288 RLTR-KKVLIVFDDVDH--PRQIKILVGRLDLFASGSRIIITTRD 329 (538)
Q Consensus 288 ~l~~-k~~LlVlDdv~~--~~~~~~l~~~l~~~~~~~~iiiTtR~ 329 (538)
.+.. +.-+||+|.+.. .++++.+.... ..+..||+|.+.
T Consensus 84 ~~~~~~~dvViIDEaQ~l~~~~ve~l~~L~---~~gi~Vil~Gl~ 125 (223)
T 2b8t_A 84 NSFNDETKVIGIDEVQFFDDRICEVANILA---ENGFVVIISGLD 125 (223)
T ss_dssp TTSCTTCCEEEECSGGGSCTHHHHHHHHHH---HTTCEEEEECCS
T ss_pred HhhCCCCCEEEEecCccCcHHHHHHHHHHH---hCCCeEEEEecc
Confidence 3322 345999999842 34444443211 137889999884
No 106
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.88 E-value=0.022 Score=50.18 Aligned_cols=24 Identities=38% Similarity=0.572 Sum_probs=21.3
Q ss_pred EEEEeccCCCchhHHHHHHHHhhc
Q 009306 213 KLGIWGIGGIGKTTIAGAIFNKIS 236 (538)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~~~ 236 (538)
.++|+|+.|+|||||++.++..+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999998654
No 107
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.85 E-value=0.0016 Score=60.94 Aligned_cols=37 Identities=24% Similarity=0.148 Sum_probs=26.3
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhhc-cceeeEEEEe
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKIS-RHFSGSYFAR 246 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~-~~f~~~~~~~ 246 (538)
...+++|.|++|+|||||++.++.... ..-..+.++.
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~ 66 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVT 66 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 456899999999999999999885322 2223444443
No 108
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.77 E-value=0.0017 Score=64.18 Aligned_cols=111 Identities=14% Similarity=0.087 Sum_probs=63.9
Q ss_pred ceEEEEeccCCCchhHHHHHHHHhhccceeeE-EEEeehhhhhhcCChHHHHHHHHHHHhcCCCCCCchhhcHHHHHHHh
Q 009306 211 VYKLGIWGIGGIGKTTIAGAIFNKISRHFSGS-YFARNVREAEETCRLGDLRQQLLSTLLNDGNVKNFLNTDLNFQSRRL 289 (538)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~-~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~~l 289 (538)
..+++|+|+.|+|||||.+.+...+....... +.+.+..+....... ..................+...|
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~---------~~v~q~~~~~~~~~~~~~La~aL 193 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKK---------CLVNQREVHRDTLGFSEALRSAL 193 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSS---------SEEEEEEBTTTBSCHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccc---------cceeeeeeccccCCHHHHHHHHh
Confidence 34899999999999999999988765442222 332211110000000 00000000011123345778888
Q ss_pred cCCCeEEEEecCCChHHHHHHhcCcCCCCCCCEEEEeccchhhh
Q 009306 290 TRKKVLIVFDDVDHPRQIKILVGRLDLFASGSRIIITTRDRQVL 333 (538)
Q Consensus 290 ~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~~~~iiiTtR~~~~~ 333 (538)
...|=+|++|+.-+.+.++.+.... ..|..||+|+-.....
T Consensus 194 ~~~PdvillDEp~d~e~~~~~~~~~---~~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 194 REDPDIILVGEMRDLETIRLALTAA---ETGHLVFGTLHTTSAA 234 (356)
T ss_dssp TSCCSEEEESCCCSHHHHHHHHHHH---HTTCEEEEEESCSSHH
T ss_pred hhCcCEEecCCCCCHHHHHHHHHHH---hcCCEEEEEEccChHH
Confidence 8999999999998877666544332 2366688887765443
No 109
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.74 E-value=0.003 Score=61.81 Aligned_cols=55 Identities=13% Similarity=0.080 Sum_probs=37.7
Q ss_pred eeccchhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEe
Q 009306 191 VGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFAR 246 (538)
Q Consensus 191 vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 246 (538)
.|-..-+..|..++. +-....++.|.|.+|+||||||..++......-..+.|++
T Consensus 27 ~gi~TG~~~LD~~~g-Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fS 81 (338)
T 4a1f_A 27 TGIPTGFVQLDNYTS-GFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFS 81 (338)
T ss_dssp CSBCCSCHHHHHHHC-SBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CcccCCChHHHHHhc-CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 344444555665553 3345568999999999999999999987655434455554
No 110
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.73 E-value=0.0007 Score=66.52 Aligned_cols=48 Identities=19% Similarity=0.316 Sum_probs=39.7
Q ss_pred CCceeccchhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhccce
Q 009306 188 EDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHF 239 (538)
Q Consensus 188 ~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f 239 (538)
+.++|++..++.+...+..+. .+.|+|++|+|||+||+.+++.....|
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~~----~vll~G~pGtGKT~la~~la~~~~~~~ 74 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTGG----HILLEGVPGLAKTLSVNTLAKTMDLDF 74 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHTC----CEEEESCCCHHHHHHHHHHHHHTTCCE
T ss_pred cceeCcHHHHHHHHHHHHcCC----eEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 578999999988888776532 489999999999999999998775443
No 111
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.71 E-value=0.0037 Score=61.95 Aligned_cols=55 Identities=24% Similarity=0.144 Sum_probs=39.4
Q ss_pred eccchhHHHHHhhh-cCCCCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEe
Q 009306 192 GVRLPMKEIESLLR-TGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFAR 246 (538)
Q Consensus 192 GR~~~l~~l~~~L~-~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 246 (538)
+...-...|..+|. .+-....++.|.|++|+||||||..++......-..++|+.
T Consensus 54 ~i~TG~~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~ 109 (366)
T 1xp8_A 54 VVSTGSLSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFID 109 (366)
T ss_dssp EECCSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eecCCCHHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEE
Confidence 33444556666665 34345668999999999999999999887654444677776
No 112
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.69 E-value=0.0051 Score=60.65 Aligned_cols=50 Identities=18% Similarity=0.155 Sum_probs=35.8
Q ss_pred hHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhcc------ceeeEEEEe
Q 009306 197 MKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISR------HFSGSYFAR 246 (538)
Q Consensus 197 l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~------~f~~~~~~~ 246 (538)
...|..+|..+-....++.|+|++|+||||||..++..... .-..++|+.
T Consensus 108 ~~~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~ 163 (343)
T 1v5w_A 108 SQEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFID 163 (343)
T ss_dssp CHHHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEE
T ss_pred ChhHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEE
Confidence 34556666544456778999999999999999999986422 224566766
No 113
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.66 E-value=0.0036 Score=61.74 Aligned_cols=53 Identities=19% Similarity=0.106 Sum_probs=38.4
Q ss_pred cchhHHHHHhhh-cCCCCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEe
Q 009306 194 RLPMKEIESLLR-TGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFAR 246 (538)
Q Consensus 194 ~~~l~~l~~~L~-~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 246 (538)
..-...|..+|. .+-....++.|.|++|+||||||..++......-..++|+.
T Consensus 43 ~TG~~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~ 96 (349)
T 2zr9_A 43 PTGSISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFID 96 (349)
T ss_dssp CCSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred ccCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 334456666665 44445678999999999999999999977654444567766
No 114
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.64 E-value=0.0032 Score=58.47 Aligned_cols=49 Identities=20% Similarity=0.206 Sum_probs=34.0
Q ss_pred HHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhcc------ceeeEEEEe
Q 009306 198 KEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISR------HFSGSYFAR 246 (538)
Q Consensus 198 ~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~------~f~~~~~~~ 246 (538)
..|..+|..+-....++.|.|++|+|||||+..++..... .-..++|+.
T Consensus 11 ~~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~ 65 (243)
T 1n0w_A 11 KELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYID 65 (243)
T ss_dssp HHHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEE
T ss_pred hHHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEE
Confidence 4455556443344568999999999999999999985322 124566665
No 115
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.62 E-value=0.0059 Score=58.92 Aligned_cols=36 Identities=22% Similarity=0.315 Sum_probs=28.1
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhhccceeeEEEE
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFA 245 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 245 (538)
...+++|+|++|+||||++..++..++..-..+.++
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv 138 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLA 138 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEE
Confidence 457899999999999999999998776543334443
No 116
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.57 E-value=0.0035 Score=61.29 Aligned_cols=50 Identities=16% Similarity=0.211 Sum_probs=35.0
Q ss_pred hHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhccc------eeeEEEEe
Q 009306 197 MKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRH------FSGSYFAR 246 (538)
Q Consensus 197 l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~------f~~~~~~~ 246 (538)
...|..+|..+-....++.|+|++|+||||||..++...... -..++|+.
T Consensus 93 ~~~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~ 148 (324)
T 2z43_A 93 SQALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYID 148 (324)
T ss_dssp CHHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEE
T ss_pred chhHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEE
Confidence 345555664433456689999999999999999999864322 23566765
No 117
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.56 E-value=0.0053 Score=60.65 Aligned_cols=55 Identities=18% Similarity=0.155 Sum_probs=39.5
Q ss_pred eccchhHHHHHhhh-cCCCCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEe
Q 009306 192 GVRLPMKEIESLLR-TGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFAR 246 (538)
Q Consensus 192 GR~~~l~~l~~~L~-~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 246 (538)
+-..-...|..+|. .+-...+++.|.|++|+||||||..++......-..++|+.
T Consensus 43 ~i~TG~~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid 98 (356)
T 1u94_A 43 TISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 98 (356)
T ss_dssp EECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cccCCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 33344556666665 44445678999999999999999999987655444677776
No 118
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.55 E-value=0.0027 Score=59.97 Aligned_cols=111 Identities=12% Similarity=0.064 Sum_probs=60.1
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhhcCChHHHHHHHHHHHhcCCCCCCchhhcHHHHHHHh
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEETCRLGDLRQQLLSTLLNDGNVKNFLNTDLNFQSRRL 289 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~~l 289 (538)
...+++|+|+.|+|||||++.+...+...+.+.+++....-......... +................+.+.+
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~~--------~v~q~~~gl~~~~l~~~la~aL 95 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKS--------IVNQREVGEDTKSFADALRAAL 95 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSS--------EEEEEEBTTTBSCHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCcce--------eeeHHHhCCCHHHHHHHHHHHH
Confidence 45689999999999999999998866543334444331100000000000 0000000001122345566666
Q ss_pred cCCCeEEEEecCCChHHHHHHhcCcCCCCCCCEEEEeccchh
Q 009306 290 TRKKVLIVFDDVDHPRQIKILVGRLDLFASGSRIIITTRDRQ 331 (538)
Q Consensus 290 ~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~~~~iiiTtR~~~ 331 (538)
...|-+|++|+..+.+....++... ..|.-|++|+-+..
T Consensus 96 ~~~p~illlDEp~D~~~~~~~l~~~---~~g~~vl~t~H~~~ 134 (261)
T 2eyu_A 96 REDPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTNT 134 (261)
T ss_dssp HHCCSEEEESCCCSHHHHHHHHHHH---HTTCEEEEEECCSS
T ss_pred hhCCCEEEeCCCCCHHHHHHHHHHH---ccCCEEEEEeCcch
Confidence 6678899999997665554443322 24666777776554
No 119
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.47 E-value=0.0031 Score=56.96 Aligned_cols=44 Identities=23% Similarity=0.291 Sum_probs=32.1
Q ss_pred ccchhHHHHHhhhc-CCCCceEEEEeccCCCchhHHHHHHHHhhc
Q 009306 193 VRLPMKEIESLLRT-GSTNVYKLGIWGIGGIGKTTIAGAIFNKIS 236 (538)
Q Consensus 193 R~~~l~~l~~~L~~-~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (538)
|+..++.|.+.+.. ......+++|+|++|+||||+++.+...+.
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~ 47 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLR 47 (201)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 44455666555543 223467899999999999999999988664
No 120
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.45 E-value=0.024 Score=57.90 Aligned_cols=72 Identities=19% Similarity=0.105 Sum_probs=45.6
Q ss_pred eeccchhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhccc-eeeEEEEeehhhhhhcCChHHHHHHHHHHHh
Q 009306 191 VGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRH-FSGSYFARNVREAEETCRLGDLRQQLLSTLL 269 (538)
Q Consensus 191 vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~ 269 (538)
.|-..-+..|..++ .+-....++.|.|.+|+||||||..++...... -..++|++. ......+...++....
T Consensus 181 ~~i~tG~~~LD~~l-gGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl------E~~~~~l~~R~~~~~~ 253 (444)
T 2q6t_A 181 AGVRTGFKELDQLI-GTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL------EMPAAQLTLRMMCSEA 253 (444)
T ss_dssp --CCCSCHHHHHHH-CCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES------SSCHHHHHHHHHHHHT
T ss_pred CcccCCCHhhhhhc-CCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC------CCCHHHHHHHHHHHHc
Confidence 34444455666666 444556789999999999999999999876543 334566542 2334456666554433
No 121
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.43 E-value=0.0096 Score=53.91 Aligned_cols=88 Identities=18% Similarity=0.168 Sum_probs=47.3
Q ss_pred EEEEeccCCCchhHHHHHHHHhhccceeeEEEEee---hhhhh-hcCChHHHHHHHHHHHhcCCCCCCchhhcHHHHHHH
Q 009306 213 KLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARN---VREAE-ETCRLGDLRQQLLSTLLNDGNVKNFLNTDLNFQSRR 288 (538)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~---~~~~~-~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~~ 288 (538)
+|.|.|++|+||+|.|+.++.++. ...++. +++.. ....+....+..... +. ....+-....+.+.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g-----~~~istGdllR~~i~~~t~lg~~~~~~~~~-G~----lvpd~iv~~lv~~~ 71 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG-----FVHISTGDILREAVQKGTPLGKKAKEYMER-GE----LVPDDLIIALIEEV 71 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC-----CEEEEHHHHHHHHHHHTCHHHHHHHHHHHH-TC----CCCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC-----CeEEcHHHHHHHHHHhcChhhhhHHHHHhc-CC----cCCHHHHHHHHHHh
Confidence 478899999999999999988652 223331 11111 111122222222221 11 12233445666677
Q ss_pred hcCCCeEEEEecC-CChHHHHHHh
Q 009306 289 LTRKKVLIVFDDV-DHPRQIKILV 311 (538)
Q Consensus 289 l~~k~~LlVlDdv-~~~~~~~~l~ 311 (538)
+..... +|||.+ .+..|.+.|.
T Consensus 72 l~~~~~-~ilDGfPRt~~Qa~~l~ 94 (206)
T 3sr0_A 72 FPKHGN-VIFDGFPRTVKQAEALD 94 (206)
T ss_dssp CCSSSC-EEEESCCCSHHHHHHHH
T ss_pred hccCCc-eEecCCchhHHHHHHHH
Confidence 765544 689998 4556665553
No 122
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.43 E-value=0.0017 Score=57.29 Aligned_cols=26 Identities=15% Similarity=0.171 Sum_probs=23.0
Q ss_pred eEEEEeccCCCchhHHHHHHHHhhcc
Q 009306 212 YKLGIWGIGGIGKTTIAGAIFNKISR 237 (538)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~~~~ 237 (538)
.+|.|+|++|+||||+|+.++.++..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~~ 29 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLPE 29 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 46899999999999999999988653
No 123
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.37 E-value=0.0012 Score=72.83 Aligned_cols=152 Identities=18% Similarity=0.202 Sum_probs=81.6
Q ss_pred CCCceeccchhHHHHHhhhc-----------CCCCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhhcC
Q 009306 187 NEDLVGVRLPMKEIESLLRT-----------GSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEETC 255 (538)
Q Consensus 187 ~~~~vGR~~~l~~l~~~L~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~ 255 (538)
-..++|.+...+.|.+.+.. +......+.|+|++|+|||+||+.++......|- .+. ..+...
T Consensus 476 ~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i---~v~-~~~l~~-- 549 (806)
T 1ypw_A 476 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFI---SIK-GPELLT-- 549 (806)
T ss_dssp SCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCC---CCC-CSSSTT--
T ss_pred ccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEE---EEe-chHhhh--
Confidence 35678888888888776542 1122345889999999999999999998754321 111 000000
Q ss_pred ChHHHHHHHHHHHhcCCCCCCchhhcHHHHHHHhcCCCeEEEEecCCCh----------------HHHHHHhcCcCCCC-
Q 009306 256 RLGDLRQQLLSTLLNDGNVKNFLNTDLNFQSRRLTRKKVLIVFDDVDHP----------------RQIKILVGRLDLFA- 318 (538)
Q Consensus 256 ~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~----------------~~~~~l~~~l~~~~- 318 (538)
.............+...-...+.+|+||+++.. ..+..++..+....
T Consensus 550 ----------------~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~ 613 (806)
T 1ypw_A 550 ----------------MWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMST 613 (806)
T ss_dssp ----------------CCTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC----
T ss_pred ----------------hhcCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcccc
Confidence 000001111111111112235679999998531 12345555544222
Q ss_pred -CCCEEEEeccchhhhhh-c----CCCeeEEcCCCCHHHHHHHHHhhh
Q 009306 319 -SGSRIIITTRDRQVLAN-C----GVDEVYQMEELVHDDALRLFSRHA 360 (538)
Q Consensus 319 -~~~~iiiTtR~~~~~~~-~----~~~~~~~l~~L~~~ea~~Lf~~~~ 360 (538)
.+..||.||.....+.. + .....+.++..+.++-.+++..+.
T Consensus 614 ~~~v~vI~tTN~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l 661 (806)
T 1ypw_A 614 KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANL 661 (806)
T ss_dssp --CCBCCCCCBSCGGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTT
T ss_pred cCCeEEEEecCCcccCCHHHhCccccCceeecCCCCHHHHHHHHHHHh
Confidence 23445555543322211 1 223467788889999999888776
No 124
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.32 E-value=0.0025 Score=63.40 Aligned_cols=47 Identities=17% Similarity=0.192 Sum_probs=34.3
Q ss_pred ceeccchhHHHHHhhh-------------cCCCCceEEEEeccCCCchhHHHHHHHHhhc
Q 009306 190 LVGVRLPMKEIESLLR-------------TGSTNVYKLGIWGIGGIGKTTIAGAIFNKIS 236 (538)
Q Consensus 190 ~vGR~~~l~~l~~~L~-------------~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (538)
++|.+..++.+...+. ........+.|+|++|+|||++|+.++....
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 5777777777766552 1111234589999999999999999998874
No 125
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.32 E-value=0.049 Score=55.49 Aligned_cols=54 Identities=19% Similarity=0.108 Sum_probs=38.0
Q ss_pred eccchhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEe
Q 009306 192 GVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFAR 246 (538)
Q Consensus 192 GR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 246 (538)
|-..-+..|..++. +-....++.|.|.+|+||||||..++.....+-..+.|++
T Consensus 179 gi~TG~~~LD~~lg-Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fS 232 (444)
T 3bgw_A 179 GVPSGFTELDRMTY-GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS 232 (444)
T ss_dssp SBCCSCHHHHHHHS-SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred CcCCCcHHHHhhcC-CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEE
Confidence 44444555666663 4445678999999999999999999987655434455554
No 126
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.28 E-value=0.017 Score=52.65 Aligned_cols=27 Identities=22% Similarity=0.241 Sum_probs=24.1
Q ss_pred CCceEEEEeccCCCchhHHHHHHHHhh
Q 009306 209 TNVYKLGIWGIGGIGKTTIAGAIFNKI 235 (538)
Q Consensus 209 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (538)
...++|.|.|++|+||||.|+.++.++
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999998875
No 127
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.27 E-value=0.0031 Score=57.26 Aligned_cols=28 Identities=21% Similarity=0.343 Sum_probs=24.4
Q ss_pred CCceEEEEeccCCCchhHHHHHHHHhhc
Q 009306 209 TNVYKLGIWGIGGIGKTTIAGAIFNKIS 236 (538)
Q Consensus 209 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (538)
....+++|.|++|+|||||++.++..+.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3567899999999999999999988765
No 128
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.24 E-value=0.0076 Score=58.78 Aligned_cols=38 Identities=26% Similarity=0.252 Sum_probs=29.6
Q ss_pred hHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHh
Q 009306 197 MKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNK 234 (538)
Q Consensus 197 l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 234 (538)
...|..+|..+-....++.|+|++|+|||+||..++..
T Consensus 84 ~~~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 84 SSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp CHHHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred ChhHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 44556666544445678999999999999999999875
No 129
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.24 E-value=0.022 Score=52.78 Aligned_cols=27 Identities=19% Similarity=0.358 Sum_probs=22.7
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhhc
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKIS 236 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (538)
...+++|+|+.|+|||||++.++.-+.
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 56 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEMD 56 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCSE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 345799999999999999999887543
No 130
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.22 E-value=0.0019 Score=57.42 Aligned_cols=29 Identities=28% Similarity=0.454 Sum_probs=24.5
Q ss_pred eEEEEeccCCCchhHHHHHHHHhhcccee
Q 009306 212 YKLGIWGIGGIGKTTIAGAIFNKISRHFS 240 (538)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~ 240 (538)
|.|+|+||+|+|||||++.+..+....|.
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~~~ 30 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSFG 30 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTTEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCCeE
Confidence 46899999999999999999887665554
No 131
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.21 E-value=0.0027 Score=55.46 Aligned_cols=24 Identities=17% Similarity=0.116 Sum_probs=21.8
Q ss_pred EEEEeccCCCchhHHHHHHHHhhc
Q 009306 213 KLGIWGIGGIGKTTIAGAIFNKIS 236 (538)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~~~ 236 (538)
+|+|.|++|+||||+++.++.++.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999998764
No 132
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.20 E-value=0.014 Score=52.56 Aligned_cols=26 Identities=31% Similarity=0.479 Sum_probs=23.0
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhh
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKI 235 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (538)
...+++|.|++|+|||||++.++..+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 34679999999999999999998876
No 133
>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}
Probab=96.18 E-value=0.025 Score=48.77 Aligned_cols=106 Identities=19% Similarity=0.198 Sum_probs=72.0
Q ss_pred CcccEEEcC--------------cccccccchHHHHHHHHhhCCCeeEeeC-CCC-------C-CCcchHHHHHHHHhcc
Q 009306 16 IKYDVFLSF--------------GGEDTRESFTSHLYSALSRETVETFIDD-DLR-------R-GDEISQSLLDAIEASS 72 (538)
Q Consensus 16 ~~~dvFiSy--------------~~~D~~~~~~~~l~~~l~~~g~~~~~d~-~~~-------~-g~~~~~~i~~~i~~s~ 72 (538)
++--+||+| +.+| ....+.|...-....+-.|.|. +.. . -+.|...+.+.|..|+
T Consensus 4 yrn~~YvaF~~~~~~~~~~~~~~a~~D--i~yy~lL~aWk~n~n~F~F~D~Hd~~y~vrDsS~~e~tIKrrLReRI~~Sk 81 (189)
T 3hyn_A 4 YQNANYSAFYVSEPFSESNLGANSTHD--FVYYNMLRMWKGEDNSFPFNDAHDKTYNVRDGSDWEKTLKPRLHTRLDNSK 81 (189)
T ss_dssp CCCEEEEECCCCSSCCTTSTTGGGSTT--HHHHHHHHHHHHHCTTSSCCBTTTTCCCTTSCCCTTTTHHHHHHHHHHTEE
T ss_pred cccCcEEEEeccCcccccccCCCccch--HHHHHHHHHHHcCCCceeecchhhccccccccccHHHHHHHHHHHHHHhcC
Confidence 345678888 5556 5567777776666555455564 442 2 3458899999999999
Q ss_pred eEEEEeccCcccchhhHHHHHHHHHHHhhcCCeEEEEEEeec-CCcccccCCchH
Q 009306 73 ISIIIFSESYASSRWCLDELLKILECKKEYAQIVVPVFYRVD-PSHVRKQTGNFG 126 (538)
Q Consensus 73 ~~i~v~S~~y~~s~~c~~El~~~~~~~~~~~~~v~pv~~~v~-~~~v~~~~~~~~ 126 (538)
.+|+++|++...|.|..+|+..++. ..+.+||-|..+-+ .+++.+..|.+.
T Consensus 82 ~vIllIs~~T~~s~~v~wEIe~Ai~---~~~~PII~Vy~~~~~~~~i~~~~g~~~ 133 (189)
T 3hyn_A 82 NIILFLSSITANSRALREEMNYGIG---TKGLPVIVIYPDYDKKSDIVDSNGNFK 133 (189)
T ss_dssp EEEEECCTTCCCCHHHHHHHHHHTT---TTCCCEEEEETTCCSGGGTBCTTSCBC
T ss_pred cEEEEEecCccccchhHHHHHHHHH---hcCCcEEEEECCccccchhhhccccch
Confidence 9999999999999999999998872 23455666553311 224554445543
No 134
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.11 E-value=0.041 Score=50.66 Aligned_cols=26 Identities=27% Similarity=0.358 Sum_probs=22.4
Q ss_pred ceEEEEeccCCCchhHHHHHHHHhhc
Q 009306 211 VYKLGIWGIGGIGKTTIAGAIFNKIS 236 (538)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (538)
..+++|.|+.|+|||||.+.++.-+.
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGELE 59 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 45799999999999999999887543
No 135
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.11 E-value=0.025 Score=58.77 Aligned_cols=63 Identities=10% Similarity=-0.060 Sum_probs=41.1
Q ss_pred HHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhccc-eeeEEEEeehhhhhhcCChHHHHHHHHHHH
Q 009306 199 EIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRH-FSGSYFARNVREAEETCRLGDLRQQLLSTL 268 (538)
Q Consensus 199 ~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l 268 (538)
.|..++. +-....++.|.|.+|+||||||.+++...... -..+.|++. ......+...++...
T Consensus 231 ~LD~~lg-Gl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~------E~s~~~l~~r~~~~~ 294 (503)
T 1q57_A 231 GINDKTL-GARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAML------EESVEETAEDLIGLH 294 (503)
T ss_dssp THHHHHC-CCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEES------SSCHHHHHHHHHHHH
T ss_pred hhhHhhc-ccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEec------cCCHHHHHHHHHHHH
Confidence 3444442 44456789999999999999999999887654 345666652 223445555554443
No 136
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.11 E-value=0.038 Score=53.02 Aligned_cols=36 Identities=25% Similarity=0.250 Sum_probs=28.0
Q ss_pred ceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEe
Q 009306 211 VYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFAR 246 (538)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 246 (538)
..+++++|++|+||||++..++..+...-..+.++.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~ 133 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVG 133 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 568999999999999999999987765433444443
No 137
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.03 E-value=0.011 Score=58.93 Aligned_cols=109 Identities=13% Similarity=0.066 Sum_probs=60.1
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhhccceeeEE-EEeehhhhhhcCChHHHHHHHHHHHhcCCCCCCchhhcHHHHHHH
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSY-FARNVREAEETCRLGDLRQQLLSTLLNDGNVKNFLNTDLNFQSRR 288 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~-~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~~ 288 (538)
...+++|+|+.|+|||||++.+...+.....+.+ ++.+..+....... ..+.. .............++..
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~--------~~v~Q-~~~g~~~~~~~~~l~~~ 205 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKK--------SIVNQ-REVGEDTKSFADALRAA 205 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSS--------SEEEE-EEBTTTBSCSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCc--------eEEEe-eecCCCHHHHHHHHHHH
Confidence 4567999999999999999999987654323333 33211000000000 00000 00000112335567777
Q ss_pred hcCCCeEEEEecCCChHHHHHHhcCcCCCCCCCEEEEeccch
Q 009306 289 LTRKKVLIVFDDVDHPRQIKILVGRLDLFASGSRIIITTRDR 330 (538)
Q Consensus 289 l~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~~~~iiiTtR~~ 330 (538)
+...+-+|++|++.+.+.+...+... ..|..++.|+-..
T Consensus 206 L~~~pd~illdE~~d~e~~~~~l~~~---~~g~~vi~t~H~~ 244 (372)
T 2ewv_A 206 LREDPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTN 244 (372)
T ss_dssp TTSCCSEEEESCCCSHHHHHHHHHHH---TTTCEEEECCCCC
T ss_pred hhhCcCEEEECCCCCHHHHHHHHHHH---hcCCEEEEEECcc
Confidence 77788899999997766555443332 3455666666554
No 138
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=96.03 E-value=0.044 Score=51.59 Aligned_cols=25 Identities=40% Similarity=0.363 Sum_probs=21.8
Q ss_pred ceEEEEeccCCCchhHHHHHHHHhh
Q 009306 211 VYKLGIWGIGGIGKTTIAGAIFNKI 235 (538)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (538)
..+++|.|+.|+|||||.+.++.-.
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 4479999999999999999998755
No 139
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.03 E-value=0.0037 Score=55.47 Aligned_cols=26 Identities=19% Similarity=0.367 Sum_probs=22.7
Q ss_pred ceEEEEeccCCCchhHHHHHHHHhhc
Q 009306 211 VYKLGIWGIGGIGKTTIAGAIFNKIS 236 (538)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (538)
.+.|.|+|++|+||||+|+.++.++.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34689999999999999999998763
No 140
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.00 E-value=0.004 Score=56.11 Aligned_cols=26 Identities=31% Similarity=0.432 Sum_probs=23.0
Q ss_pred ceEEEEeccCCCchhHHHHHHHHhhc
Q 009306 211 VYKLGIWGIGGIGKTTIAGAIFNKIS 236 (538)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (538)
...|+|+|++|+||||+++.++..+.
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 45799999999999999999998763
No 141
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.99 E-value=0.0054 Score=55.28 Aligned_cols=27 Identities=26% Similarity=0.342 Sum_probs=24.2
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhhc
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKIS 236 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (538)
...+++|.|++|+|||||++.++..+.
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 456899999999999999999998875
No 142
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.92 E-value=0.03 Score=57.34 Aligned_cols=54 Identities=15% Similarity=0.173 Sum_probs=36.6
Q ss_pred eccchhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhccc-eeeEEEEe
Q 009306 192 GVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRH-FSGSYFAR 246 (538)
Q Consensus 192 GR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~ 246 (538)
|-..-+..|..++ .+-....++.|.|.+|+|||||+..++...... ...++|+.
T Consensus 185 ~i~tG~~~LD~~~-gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s 239 (454)
T 2r6a_A 185 GIPTGFTELDRMT-SGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFS 239 (454)
T ss_dssp SBCCSCHHHHHHH-SSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEE
T ss_pred CCCCCcHHHHhhc-CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 3333444555555 333456689999999999999999999876543 23455654
No 143
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.92 E-value=0.0042 Score=55.00 Aligned_cols=26 Identities=23% Similarity=0.411 Sum_probs=22.9
Q ss_pred ceEEEEeccCCCchhHHHHHHHHhhc
Q 009306 211 VYKLGIWGIGGIGKTTIAGAIFNKIS 236 (538)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (538)
.++++|+|++|+|||||++.+.....
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 45799999999999999999988654
No 144
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.90 E-value=0.0074 Score=57.84 Aligned_cols=30 Identities=20% Similarity=0.195 Sum_probs=25.4
Q ss_pred CCCceEEEEeccCCCchhHHHHHHHHhhcc
Q 009306 208 STNVYKLGIWGIGGIGKTTIAGAIFNKISR 237 (538)
Q Consensus 208 ~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 237 (538)
.....+|+|.|++|+||||||+.+...+..
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 345678999999999999999999887654
No 145
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.88 E-value=0.0047 Score=57.45 Aligned_cols=48 Identities=15% Similarity=0.147 Sum_probs=33.4
Q ss_pred HHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEe
Q 009306 199 EIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFAR 246 (538)
Q Consensus 199 ~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 246 (538)
.|.++|..+-....++.|.|++|+|||||+..++......-..++|+.
T Consensus 11 ~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~ 58 (247)
T 2dr3_A 11 GVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVA 58 (247)
T ss_dssp THHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred hHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 344445433334568999999999999999998876554444566655
No 146
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.88 E-value=0.006 Score=54.28 Aligned_cols=26 Identities=23% Similarity=0.299 Sum_probs=23.1
Q ss_pred eEEEEeccCCCchhHHHHHHHHhhcc
Q 009306 212 YKLGIWGIGGIGKTTIAGAIFNKISR 237 (538)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~~~~ 237 (538)
.+|+|.|++|+||||+++.++.++..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 27 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 36899999999999999999988754
No 147
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.88 E-value=0.0046 Score=54.01 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=19.8
Q ss_pred eEEEEeccCCCchhHHHHHHHHhh
Q 009306 212 YKLGIWGIGGIGKTTIAGAIFNKI 235 (538)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~~ 235 (538)
.+|+|.|++|+||||+|+.+ ..+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~ 24 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KER 24 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHT
T ss_pred cEEEEECCCCCCHHHHHHHH-HHC
Confidence 36899999999999999999 443
No 148
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.87 E-value=0.0039 Score=54.55 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=22.1
Q ss_pred eEEEEeccCCCchhHHHHHHHHhhc
Q 009306 212 YKLGIWGIGGIGKTTIAGAIFNKIS 236 (538)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (538)
.+++|+|++|+||||+++.++..+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 3599999999999999999998754
No 149
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=95.83 E-value=0.014 Score=54.80 Aligned_cols=25 Identities=24% Similarity=0.328 Sum_probs=21.8
Q ss_pred ceEEEEeccCCCchhHHHHHHHHhh
Q 009306 211 VYKLGIWGIGGIGKTTIAGAIFNKI 235 (538)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (538)
..+++|.|+.|+|||||.+.++.-+
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4479999999999999999988754
No 150
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=95.82 E-value=0.0042 Score=61.24 Aligned_cols=49 Identities=16% Similarity=0.111 Sum_probs=34.9
Q ss_pred CCCCceeccchhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhc
Q 009306 186 ENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKIS 236 (538)
Q Consensus 186 ~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (538)
....++|.+..++.+...+... ....+.|+|++|+|||+||+.+++...
T Consensus 22 ~f~~i~G~~~~~~~l~~~~~~~--~~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 22 PFSAIVGQEDMKLALLLTAVDP--GIGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CGGGSCSCHHHHHHHHHHHHCG--GGCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CchhccChHHHHHHHHHHhhCC--CCceEEEECCCCccHHHHHHHHHHhCc
Confidence 3456899988665544333221 122389999999999999999998764
No 151
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.78 E-value=0.0054 Score=54.65 Aligned_cols=25 Identities=40% Similarity=0.325 Sum_probs=22.2
Q ss_pred CceEEEEeccCCCchhHHHHHHHHh
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNK 234 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~ 234 (538)
...+++|.|++|+|||||++.++..
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 3567999999999999999999875
No 152
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.78 E-value=0.0073 Score=54.09 Aligned_cols=41 Identities=17% Similarity=0.203 Sum_probs=30.7
Q ss_pred hhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhcc
Q 009306 196 PMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISR 237 (538)
Q Consensus 196 ~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 237 (538)
-+..+..++.. .+..+.+.|+|++|+||||+|..+++.+..
T Consensus 44 f~~~l~~~~~~-iPkkn~ili~GPPGtGKTt~a~ala~~l~g 84 (212)
T 1tue_A 44 FLGALKSFLKG-TPKKNCLVFCGPANTGKSYFGMSFIHFIQG 84 (212)
T ss_dssp HHHHHHHHHHT-CTTCSEEEEESCGGGCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhc-CCcccEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 35566666653 233446999999999999999999987643
No 153
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.77 E-value=0.0052 Score=54.66 Aligned_cols=29 Identities=28% Similarity=0.454 Sum_probs=24.4
Q ss_pred eEEEEeccCCCchhHHHHHHHHhhcccee
Q 009306 212 YKLGIWGIGGIGKTTIAGAIFNKISRHFS 240 (538)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~ 240 (538)
++++|.|+.|+|||||++.+...+...|.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~~~~~ 30 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSFG 30 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCGGGEE
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCccce
Confidence 46899999999999999999987764443
No 154
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.76 E-value=0.0072 Score=53.81 Aligned_cols=25 Identities=24% Similarity=0.232 Sum_probs=22.6
Q ss_pred ceEEEEeccCCCchhHHHHHHHHhh
Q 009306 211 VYKLGIWGIGGIGKTTIAGAIFNKI 235 (538)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (538)
..+|.|.|++|+||||+++.++..+
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 4679999999999999999998876
No 155
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.76 E-value=0.0053 Score=54.01 Aligned_cols=22 Identities=27% Similarity=0.238 Sum_probs=20.4
Q ss_pred eEEEEeccCCCchhHHHHHHHH
Q 009306 212 YKLGIWGIGGIGKTTIAGAIFN 233 (538)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~ 233 (538)
.+|.|.|++|+||||+|+.++.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999987
No 156
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.74 E-value=0.0062 Score=56.80 Aligned_cols=26 Identities=19% Similarity=0.049 Sum_probs=23.0
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhh
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKI 235 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (538)
....|+|.|++|+||||+|+.+++++
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45679999999999999999998765
No 157
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=95.74 E-value=0.0097 Score=54.60 Aligned_cols=38 Identities=26% Similarity=0.344 Sum_probs=28.2
Q ss_pred HHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhh
Q 009306 198 KEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKI 235 (538)
Q Consensus 198 ~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (538)
..|..+|..+-....+++|.|++|+|||||++.++...
T Consensus 12 ~~LD~~l~ggi~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 12 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp HHHHHHTTSSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred hhHHhHhcCCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34444554333456789999999999999999998743
No 158
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.73 E-value=0.0048 Score=54.49 Aligned_cols=26 Identities=27% Similarity=0.405 Sum_probs=22.5
Q ss_pred ceEEEEeccCCCchhHHHHHHHHhhc
Q 009306 211 VYKLGIWGIGGIGKTTIAGAIFNKIS 236 (538)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (538)
.+.|.|+|++|+||||+++.++..+.
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~ 36 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSG 36 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhC
Confidence 35689999999999999999998753
No 159
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.72 E-value=0.006 Score=53.16 Aligned_cols=26 Identities=23% Similarity=0.324 Sum_probs=22.6
Q ss_pred ceEEEEeccCCCchhHHHHHHHHhhc
Q 009306 211 VYKLGIWGIGGIGKTTIAGAIFNKIS 236 (538)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (538)
.+.|+|.|++|+||||+++.++.++.
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhC
Confidence 46799999999999999999998764
No 160
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.70 E-value=0.023 Score=54.54 Aligned_cols=37 Identities=19% Similarity=0.170 Sum_probs=27.8
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhhcc-ceeeEEEEe
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKISR-HFSGSYFAR 246 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~-~f~~~~~~~ 246 (538)
...+++|+|++|+||||++..++..+.. ....+.++.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~ 141 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFIT 141 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 3568999999999999999999987763 333344443
No 161
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.68 E-value=0.0057 Score=55.55 Aligned_cols=28 Identities=25% Similarity=0.383 Sum_probs=24.2
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhhcc
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKISR 237 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 237 (538)
...+++|+|++|+|||||++.++..+..
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 3568999999999999999999987653
No 162
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.67 E-value=0.013 Score=59.33 Aligned_cols=36 Identities=22% Similarity=0.200 Sum_probs=28.2
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhhccceeeEEEE
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFA 245 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 245 (538)
...++.++|++|+||||++..++..++..-..+..+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv 131 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLV 131 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 367899999999999999999998776553334443
No 163
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.66 E-value=0.016 Score=58.05 Aligned_cols=39 Identities=18% Similarity=0.227 Sum_probs=29.3
Q ss_pred hhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHh
Q 009306 196 PMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNK 234 (538)
Q Consensus 196 ~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 234 (538)
-+..|..+|..+-....++.|.|++|+|||||+..++-.
T Consensus 163 G~~~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~ 201 (400)
T 3lda_A 163 GSKNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVT 201 (400)
T ss_dssp SCHHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CChhHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHH
Confidence 345566666544445678999999999999999987643
No 164
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.64 E-value=0.0084 Score=52.57 Aligned_cols=25 Identities=20% Similarity=0.417 Sum_probs=22.4
Q ss_pred ceEEEEeccCCCchhHHHHHHHHhh
Q 009306 211 VYKLGIWGIGGIGKTTIAGAIFNKI 235 (538)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (538)
..+++|+|++|+||||+++.++..+
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 4679999999999999999998765
No 165
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.62 E-value=0.0071 Score=56.78 Aligned_cols=25 Identities=28% Similarity=0.198 Sum_probs=22.2
Q ss_pred eEEEEeccCCCchhHHHHHHHHhhc
Q 009306 212 YKLGIWGIGGIGKTTIAGAIFNKIS 236 (538)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (538)
.+++|.|++|+||||||+.++.++.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 4689999999999999999998754
No 166
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.62 E-value=0.0095 Score=52.85 Aligned_cols=29 Identities=28% Similarity=0.358 Sum_probs=24.8
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhhccc
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKISRH 238 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 238 (538)
...+++|.|++|+||||+++.++..+...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~ 40 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKE 40 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 35679999999999999999999877543
No 167
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.59 E-value=0.0067 Score=53.26 Aligned_cols=24 Identities=29% Similarity=0.472 Sum_probs=21.6
Q ss_pred EEEEeccCCCchhHHHHHHHHhhc
Q 009306 213 KLGIWGIGGIGKTTIAGAIFNKIS 236 (538)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~~~ 236 (538)
.|+|.|++|+||||+|+.++.++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 489999999999999999998764
No 168
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.58 E-value=0.0064 Score=54.05 Aligned_cols=26 Identities=19% Similarity=0.386 Sum_probs=23.0
Q ss_pred eEEEEeccCCCchhHHHHHHHHhhcc
Q 009306 212 YKLGIWGIGGIGKTTIAGAIFNKISR 237 (538)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~~~~ 237 (538)
.+|+|.|++|+||||+++.++.++..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 29 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRK 29 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 46999999999999999999987653
No 169
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.56 E-value=0.014 Score=55.86 Aligned_cols=27 Identities=30% Similarity=0.404 Sum_probs=23.4
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhhc
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKIS 236 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (538)
...++.|.|++|+||||+|+.+..++.
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~ 58 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQ 58 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 356899999999999999999988753
No 170
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.54 E-value=0.0058 Score=55.09 Aligned_cols=24 Identities=25% Similarity=0.441 Sum_probs=21.9
Q ss_pred eEEEEeccCCCchhHHHHHHHHhh
Q 009306 212 YKLGIWGIGGIGKTTIAGAIFNKI 235 (538)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~~ 235 (538)
.+|+|+|++|+||||+|+.++..+
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 469999999999999999998876
No 171
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.52 E-value=0.0083 Score=53.57 Aligned_cols=26 Identities=27% Similarity=0.210 Sum_probs=22.8
Q ss_pred ceEEEEeccCCCchhHHHHHHHHhhc
Q 009306 211 VYKLGIWGIGGIGKTTIAGAIFNKIS 236 (538)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (538)
..+|+|.|++|+||||+|+.++..+.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45799999999999999999988753
No 172
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.51 E-value=0.017 Score=56.21 Aligned_cols=36 Identities=22% Similarity=0.190 Sum_probs=28.2
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhhccceeeEEEE
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFA 245 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 245 (538)
...+++|+|++|+||||++..++..+...-..+.++
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVlli 139 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIA 139 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 467899999999999999999998776543334444
No 173
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.50 E-value=0.006 Score=54.01 Aligned_cols=24 Identities=29% Similarity=0.450 Sum_probs=21.5
Q ss_pred EEEEeccCCCchhHHHHHHHHhhc
Q 009306 213 KLGIWGIGGIGKTTIAGAIFNKIS 236 (538)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~~~ 236 (538)
+|+|+|++|+||||+|+.++.++.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHcC
Confidence 489999999999999999998754
No 174
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=95.46 E-value=0.099 Score=49.89 Aligned_cols=26 Identities=27% Similarity=0.359 Sum_probs=22.3
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhh
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKI 235 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (538)
...+++|.|+.|+|||||.+.++.-+
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 44579999999999999999988654
No 175
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.45 E-value=0.0066 Score=53.59 Aligned_cols=26 Identities=27% Similarity=0.309 Sum_probs=18.7
Q ss_pred ceEEEEeccCCCchhHHHHHHHHhhc
Q 009306 211 VYKLGIWGIGGIGKTTIAGAIFNKIS 236 (538)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (538)
..+|.|.|++|+||||+|+.++..+.
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 34799999999999999999988754
No 176
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=95.44 E-value=0.03 Score=57.44 Aligned_cols=27 Identities=26% Similarity=0.300 Sum_probs=23.4
Q ss_pred EEEEeccCCCchhHHHHHHHHhhccce
Q 009306 213 KLGIWGIGGIGKTTIAGAIFNKISRHF 239 (538)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~~~~~f 239 (538)
.+.|.|++|.|||+++..++..+....
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l~~~~ 73 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEALISTG 73 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTT
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcC
Confidence 799999999999999999998765543
No 177
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.44 E-value=0.0086 Score=53.81 Aligned_cols=25 Identities=40% Similarity=0.648 Sum_probs=22.2
Q ss_pred EEEEeccCCCchhHHHHHHHHhhcc
Q 009306 213 KLGIWGIGGIGKTTIAGAIFNKISR 237 (538)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~~~~ 237 (538)
.|+|.|+.|+||||+++.++..+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~ 26 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGY 26 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCC
Confidence 5899999999999999999987653
No 178
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.43 E-value=0.0099 Score=52.60 Aligned_cols=25 Identities=24% Similarity=0.230 Sum_probs=22.1
Q ss_pred ceEEEEeccCCCchhHHHHHHHHhh
Q 009306 211 VYKLGIWGIGGIGKTTIAGAIFNKI 235 (538)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (538)
...|+|.|++|+||||+++.++..+
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999998765
No 179
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.42 E-value=0.0089 Score=56.04 Aligned_cols=27 Identities=19% Similarity=0.413 Sum_probs=23.8
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhhc
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKIS 236 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (538)
...+|+|+|++|+||||+|+.+...+.
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 456899999999999999999988654
No 180
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.41 E-value=0.056 Score=54.64 Aligned_cols=36 Identities=22% Similarity=0.127 Sum_probs=28.2
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhhccceeeEEEE
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFA 245 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 245 (538)
...++.++|++|+||||++..++..++.+...+..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv 134 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVV 134 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 467999999999999999999998776653333333
No 181
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.41 E-value=0.0068 Score=54.80 Aligned_cols=26 Identities=23% Similarity=0.470 Sum_probs=23.0
Q ss_pred ceEEEEeccCCCchhHHHHHHHHhhc
Q 009306 211 VYKLGIWGIGGIGKTTIAGAIFNKIS 236 (538)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (538)
.++++|+|++|+|||||++.+...+.
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 45799999999999999999998764
No 182
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.40 E-value=0.0073 Score=52.73 Aligned_cols=24 Identities=21% Similarity=0.329 Sum_probs=21.6
Q ss_pred EEEEeccCCCchhHHHHHHHHhhc
Q 009306 213 KLGIWGIGGIGKTTIAGAIFNKIS 236 (538)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~~~ 236 (538)
.|+|+|++|+||||+|+.++..+.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998753
No 183
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.40 E-value=0.014 Score=69.33 Aligned_cols=97 Identities=20% Similarity=0.097 Sum_probs=56.7
Q ss_pred hHHHHHhhh-cCCCCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhhcCChHHHHHHHHHHHhcCCC--
Q 009306 197 MKEIESLLR-TGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEETCRLGDLRQQLLSTLLNDGN-- 273 (538)
Q Consensus 197 l~~l~~~L~-~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~-- 273 (538)
...|..+|. .+-...+.+.|+|++|+|||+||.+++.....+-..+.|+. ......... ...++...+
T Consensus 1412 ~~~LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~----~e~~~~~l~-----a~~~G~dl~~l 1482 (2050)
T 3cmu_A 1412 SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID----AEHALDPIY-----ARKLGVDIDNL 1482 (2050)
T ss_dssp CHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEC----TTSCCCHHH-----HHHTTCCTTTC
T ss_pred CHHHHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEE----cccccCHHH-----HHHcCCCchhc
Confidence 344666665 33345678999999999999999999987665555667765 221112222 222221100
Q ss_pred ---CCCchhhcHHHHHHHh-cCCCeEEEEecCC
Q 009306 274 ---VKNFLNTDLNFQSRRL-TRKKVLIVFDDVD 302 (538)
Q Consensus 274 ---~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~ 302 (538)
.....++....+.... ..++-+||+|.++
T Consensus 1483 ~v~~~~~~E~~l~~~~~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1483 LCSQPDTGEQALEICDALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp EEECCSSHHHHHHHHHHHHHHTCCSEEEESCGG
T ss_pred eeecCChHHHHHHHHHHHHhcCCCCEEEEcChh
Confidence 0112233444444333 3578899999984
No 184
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.40 E-value=0.0085 Score=53.96 Aligned_cols=25 Identities=24% Similarity=0.309 Sum_probs=22.1
Q ss_pred ceEEEEeccCCCchhHHHHHHHHhh
Q 009306 211 VYKLGIWGIGGIGKTTIAGAIFNKI 235 (538)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (538)
..+++|.|+.|+|||||++.++...
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 3579999999999999999998764
No 185
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.39 E-value=0.011 Score=53.16 Aligned_cols=26 Identities=23% Similarity=0.244 Sum_probs=23.0
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhh
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKI 235 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (538)
...+|+|.|++|+||||+++.++..+
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45689999999999999999998765
No 186
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.39 E-value=0.0097 Score=53.30 Aligned_cols=28 Identities=21% Similarity=0.431 Sum_probs=23.9
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhhcc
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKISR 237 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 237 (538)
..++++|+|++|+|||||++.+......
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~~ 45 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNPE 45 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCTT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCCc
Confidence 4567999999999999999999987543
No 187
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.37 E-value=0.0094 Score=52.87 Aligned_cols=24 Identities=33% Similarity=0.361 Sum_probs=21.8
Q ss_pred ceEEEEeccCCCchhHHHHHHHHh
Q 009306 211 VYKLGIWGIGGIGKTTIAGAIFNK 234 (538)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~ 234 (538)
...|+|+|++|+||||+++.++..
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 457999999999999999999887
No 188
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.37 E-value=0.01 Score=52.82 Aligned_cols=24 Identities=29% Similarity=0.290 Sum_probs=21.7
Q ss_pred eEEEEeccCCCchhHHHHHHHHhh
Q 009306 212 YKLGIWGIGGIGKTTIAGAIFNKI 235 (538)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~~ 235 (538)
.+|+|.|++|+||||+|+.++..+
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998765
No 189
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.34 E-value=0.0094 Score=53.33 Aligned_cols=25 Identities=28% Similarity=0.218 Sum_probs=22.5
Q ss_pred eEEEEeccCCCchhHHHHHHHHhhc
Q 009306 212 YKLGIWGIGGIGKTTIAGAIFNKIS 236 (538)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (538)
.+|+|.|++|+||||+|+.++.++.
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999998764
No 190
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.32 E-value=0.015 Score=52.48 Aligned_cols=27 Identities=26% Similarity=0.299 Sum_probs=23.8
Q ss_pred eEEEEeccCCCchhHHHHHHHHhhccc
Q 009306 212 YKLGIWGIGGIGKTTIAGAIFNKISRH 238 (538)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~~~~~ 238 (538)
..|+|.|++|+||||+|+.++..+...
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 579999999999999999999877553
No 191
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.31 E-value=0.012 Score=51.16 Aligned_cols=29 Identities=21% Similarity=0.177 Sum_probs=24.6
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhhccc
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKISRH 238 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 238 (538)
..++++|.|++|+|||||+..+...+...
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~~~ 31 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAAVRE 31 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhhHhc
Confidence 35689999999999999999999887654
No 192
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=95.28 E-value=0.025 Score=55.24 Aligned_cols=104 Identities=13% Similarity=-0.014 Sum_probs=57.0
Q ss_pred eEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhhcCChHHHHHHHHHHHhcCCCCCCchhhcHHHHHHHhcC
Q 009306 212 YKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEETCRLGDLRQQLLSTLLNDGNVKNFLNTDLNFQSRRLTR 291 (538)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~ 291 (538)
..++|+|+.|+|||||++.++..+... .+.+.+.+..+.... ... ..+.-.. ..-......+...+..
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~~~-~g~i~i~~~~e~~~~-~~~-------~~i~~~~---ggg~~~r~~la~aL~~ 239 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIPKE-ERIISIEDTEEIVFK-HHK-------NYTQLFF---GGNITSADCLKSCLRM 239 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSCTT-SCEEEEESSCCCCCS-SCS-------SEEEEEC---BTTBCHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcCC-CcEEEECCeeccccc-cch-------hEEEEEe---CCChhHHHHHHHHhhh
Confidence 359999999999999999998765443 445555432111000 000 0000000 0112334556667778
Q ss_pred CCeEEEEecCCChHHHHHHhcCcCCCCCCCEEEEeccch
Q 009306 292 KKVLIVFDDVDHPRQIKILVGRLDLFASGSRIIITTRDR 330 (538)
Q Consensus 292 k~~LlVlDdv~~~~~~~~l~~~l~~~~~~~~iiiTtR~~ 330 (538)
.|-+|++|+..+.+.++.+... . ..+.-+|+|+...
T Consensus 240 ~p~ilildE~~~~e~~~~l~~~-~--~g~~tvi~t~H~~ 275 (330)
T 2pt7_A 240 RPDRIILGELRSSEAYDFYNVL-C--SGHKGTLTTLHAG 275 (330)
T ss_dssp CCSEEEECCCCSTHHHHHHHHH-H--TTCCCEEEEEECS
T ss_pred CCCEEEEcCCChHHHHHHHHHH-h--cCCCEEEEEEccc
Confidence 8889999999775555444322 1 1122356666544
No 193
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.26 E-value=0.012 Score=57.63 Aligned_cols=30 Identities=27% Similarity=0.326 Sum_probs=24.9
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhhccce
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKISRHF 239 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f 239 (538)
....+.|+|++|+||||+++.++..+...|
T Consensus 23 ~~~~i~l~G~~G~GKTTl~~~la~~l~~~f 52 (359)
T 2ga8_A 23 YRVCVILVGSPGSGKSTIAEELCQIINEKY 52 (359)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 456699999999999999999998765443
No 194
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.26 E-value=0.011 Score=53.54 Aligned_cols=27 Identities=33% Similarity=0.463 Sum_probs=23.5
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhhc
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKIS 236 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (538)
...+++|+|+.|+|||||++.++..+.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456899999999999999999988654
No 195
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.25 E-value=0.011 Score=51.27 Aligned_cols=24 Identities=17% Similarity=0.328 Sum_probs=21.5
Q ss_pred EEEEeccCCCchhHHHHHHHHhhc
Q 009306 213 KLGIWGIGGIGKTTIAGAIFNKIS 236 (538)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~~~ 236 (538)
.|+|+|++|+||||+|+.+...+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999998754
No 196
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.24 E-value=0.012 Score=52.34 Aligned_cols=26 Identities=23% Similarity=0.203 Sum_probs=22.8
Q ss_pred ceEEEEeccCCCchhHHHHHHHHhhc
Q 009306 211 VYKLGIWGIGGIGKTTIAGAIFNKIS 236 (538)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (538)
..+|+|.|++|+||||+|+.++..+.
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45799999999999999999988653
No 197
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.23 E-value=0.019 Score=51.20 Aligned_cols=25 Identities=24% Similarity=0.326 Sum_probs=22.2
Q ss_pred EEEEeccCCCchhHHHHHHHHhhcc
Q 009306 213 KLGIWGIGGIGKTTIAGAIFNKISR 237 (538)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~~~~ 237 (538)
.|+|.|+.|+||||+++.+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEK 26 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999987643
No 198
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.22 E-value=0.014 Score=52.54 Aligned_cols=26 Identities=27% Similarity=0.309 Sum_probs=22.7
Q ss_pred ceEEEEeccCCCchhHHHHHHHHhhc
Q 009306 211 VYKLGIWGIGGIGKTTIAGAIFNKIS 236 (538)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (538)
...|+|+|++|+||||+|+.++..+.
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 44799999999999999999988763
No 199
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.21 E-value=0.01 Score=54.48 Aligned_cols=24 Identities=29% Similarity=0.351 Sum_probs=21.6
Q ss_pred eEEEEeccCCCchhHHHHHHHHhh
Q 009306 212 YKLGIWGIGGIGKTTIAGAIFNKI 235 (538)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~~ 235 (538)
.+|+|+|++|+||||+++.+...+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 469999999999999999998765
No 200
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.20 E-value=0.011 Score=52.62 Aligned_cols=23 Identities=26% Similarity=0.287 Sum_probs=20.5
Q ss_pred eEEEEeccCCCchhHHHHHHHHh
Q 009306 212 YKLGIWGIGGIGKTTIAGAIFNK 234 (538)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~ 234 (538)
.+++|.|++|+|||||++.++..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~ 25 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQ 25 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhcc
Confidence 46899999999999999999863
No 201
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=95.19 E-value=0.068 Score=53.26 Aligned_cols=34 Identities=24% Similarity=0.384 Sum_probs=25.4
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhhccceeeEEEE
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFA 245 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 245 (538)
...+++|.|+.|+|||||.+.++.-.. ..+.+++
T Consensus 46 ~Ge~~~llGpsGsGKSTLLr~iaGl~~--~~G~I~i 79 (390)
T 3gd7_A 46 PGQRVGLLGRTGSGKSTLLSAFLRLLN--TEGEIQI 79 (390)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTCSE--EEEEEEE
T ss_pred CCCEEEEECCCCChHHHHHHHHhCCCC--CCeEEEE
Confidence 345799999999999999999986433 3344444
No 202
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.18 E-value=0.011 Score=53.29 Aligned_cols=25 Identities=28% Similarity=0.395 Sum_probs=22.4
Q ss_pred ceEEEEeccCCCchhHHHHHHHHhh
Q 009306 211 VYKLGIWGIGGIGKTTIAGAIFNKI 235 (538)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (538)
..+++|+|++|+||||+++.+....
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4579999999999999999998876
No 203
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.18 E-value=0.17 Score=51.15 Aligned_cols=37 Identities=19% Similarity=0.152 Sum_probs=29.0
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhhccc-eeeEEEEe
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKISRH-FSGSYFAR 246 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~ 246 (538)
..++|.++|.+|+||||++..++..++.. ...+..+.
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd 136 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVS 136 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEe
Confidence 46789999999999999999999887765 33444443
No 204
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.18 E-value=0.014 Score=52.83 Aligned_cols=28 Identities=14% Similarity=0.179 Sum_probs=24.1
Q ss_pred ceEEEEeccCCCchhHHHHHHHHhhccc
Q 009306 211 VYKLGIWGIGGIGKTTIAGAIFNKISRH 238 (538)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 238 (538)
..+|+|.|++|+||||+++.++..+...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~ 36 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCAA 36 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4579999999999999999999876543
No 205
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.17 E-value=0.012 Score=53.81 Aligned_cols=26 Identities=23% Similarity=0.311 Sum_probs=22.7
Q ss_pred ceEEEEeccCCCchhHHHHHHHHhhc
Q 009306 211 VYKLGIWGIGGIGKTTIAGAIFNKIS 236 (538)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (538)
...|+|.|++|+||||+|+.++..+.
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 34689999999999999999998764
No 206
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.13 E-value=0.013 Score=51.56 Aligned_cols=27 Identities=26% Similarity=0.331 Sum_probs=23.4
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhhc
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKIS 236 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (538)
...+++|+|+.|+||||+++.+...+.
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~ 30 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLV 30 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 346799999999999999999998764
No 207
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.09 E-value=0.013 Score=52.55 Aligned_cols=25 Identities=32% Similarity=0.351 Sum_probs=22.5
Q ss_pred CceEEEEeccCCCchhHHHHHHHHh
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNK 234 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~ 234 (538)
...+|+|+|+.|+||||+++.++..
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 4668999999999999999999875
No 208
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.09 E-value=0.013 Score=53.06 Aligned_cols=26 Identities=31% Similarity=0.566 Sum_probs=22.8
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhh
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKI 235 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (538)
...+++|+|++|+||||+++.+...+
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 45689999999999999999988754
No 209
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.03 E-value=0.012 Score=52.25 Aligned_cols=24 Identities=33% Similarity=0.512 Sum_probs=21.8
Q ss_pred EEEEeccCCCchhHHHHHHHHhhc
Q 009306 213 KLGIWGIGGIGKTTIAGAIFNKIS 236 (538)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~~~ 236 (538)
+|+|.|+.|+||||+++.+...+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999998764
No 210
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.02 E-value=0.013 Score=53.12 Aligned_cols=27 Identities=15% Similarity=0.123 Sum_probs=23.6
Q ss_pred ceEEEEeccCCCchhHHHHHHHHhhcc
Q 009306 211 VYKLGIWGIGGIGKTTIAGAIFNKISR 237 (538)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~~ 237 (538)
..+|+|.|++|+||||+++.+...+..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~ 36 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKN 36 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 457999999999999999999987654
No 211
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.00 E-value=0.023 Score=55.42 Aligned_cols=29 Identities=31% Similarity=0.451 Sum_probs=25.1
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhhccc
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKISRH 238 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 238 (538)
...+++|+|+.|+||||+++.++..++..
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~ 156 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKNH 156 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 46789999999999999999999876544
No 212
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=94.99 E-value=0.015 Score=62.02 Aligned_cols=49 Identities=14% Similarity=0.236 Sum_probs=40.2
Q ss_pred CCCCceeccchhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhccc
Q 009306 186 ENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRH 238 (538)
Q Consensus 186 ~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 238 (538)
....++|.+..++.+...+..+ ..+.|+|++|+||||||+.++..+...
T Consensus 39 ~l~~i~G~~~~l~~l~~~i~~g----~~vll~Gp~GtGKTtlar~ia~~l~~~ 87 (604)
T 3k1j_A 39 LIDQVIGQEHAVEVIKTAANQK----RHVLLIGEPGTGKSMLGQAMAELLPTE 87 (604)
T ss_dssp HHHHCCSCHHHHHHHHHHHHTT----CCEEEECCTTSSHHHHHHHHHHTSCCS
T ss_pred ccceEECchhhHhhccccccCC----CEEEEEeCCCCCHHHHHHHHhccCCcc
Confidence 3457899998888888887754 369999999999999999999876544
No 213
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=94.99 E-value=0.013 Score=53.05 Aligned_cols=25 Identities=24% Similarity=0.408 Sum_probs=22.4
Q ss_pred EEEEeccCCCchhHHHHHHHHhhcc
Q 009306 213 KLGIWGIGGIGKTTIAGAIFNKISR 237 (538)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~~~~ 237 (538)
+|+|.|+.|+||||+++.+...+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 6899999999999999999987653
No 214
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.98 E-value=0.012 Score=52.92 Aligned_cols=21 Identities=33% Similarity=0.517 Sum_probs=19.8
Q ss_pred EEEEeccCCCchhHHHHHHHH
Q 009306 213 KLGIWGIGGIGKTTIAGAIFN 233 (538)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~ 233 (538)
.|+|+|+.|+||||+++.++.
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 589999999999999999987
No 215
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=94.98 E-value=0.014 Score=54.94 Aligned_cols=26 Identities=23% Similarity=0.445 Sum_probs=22.9
Q ss_pred ceEEEEeccCCCchhHHHHHHHHhhc
Q 009306 211 VYKLGIWGIGGIGKTTIAGAIFNKIS 236 (538)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (538)
..+|.|.|++|+||||+|+.++..+.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 45799999999999999999998754
No 216
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=94.97 E-value=0.011 Score=55.10 Aligned_cols=48 Identities=23% Similarity=0.205 Sum_probs=32.3
Q ss_pred HHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhc-cceeeEEEEe
Q 009306 199 EIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKIS-RHFSGSYFAR 246 (538)
Q Consensus 199 ~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~-~~f~~~~~~~ 246 (538)
.|.++|..+-....++.|.|.+|+|||+||.+++.... .....++|+.
T Consensus 18 ~LD~~l~GGl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s 66 (251)
T 2zts_A 18 GFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVT 66 (251)
T ss_dssp TTGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred HHHHhhcCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeec
Confidence 34445544434566899999999999999999876533 3333455544
No 217
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.97 E-value=0.017 Score=55.93 Aligned_cols=47 Identities=21% Similarity=0.267 Sum_probs=32.6
Q ss_pred ceeccchhHHHHHhhhcC--CCCceEEEEeccCCCchhHHHHHHHHhhc
Q 009306 190 LVGVRLPMKEIESLLRTG--STNVYKLGIWGIGGIGKTTIAGAIFNKIS 236 (538)
Q Consensus 190 ~vGR~~~l~~l~~~L~~~--~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (538)
++|-...+..+...+... .....+++|.|++|+|||||++.+...+.
T Consensus 69 ~~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 69 YVTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hhcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 345555555555433332 33466899999999999999999887654
No 218
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=94.96 E-value=0.012 Score=51.49 Aligned_cols=23 Identities=30% Similarity=0.417 Sum_probs=19.6
Q ss_pred CceEEEEeccCCCchhHHHHHHH
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIF 232 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~ 232 (538)
...+++|.|++|+|||||++.++
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHS
T ss_pred CCEEEEEECCCCCCHHHHHHHHc
Confidence 35679999999999999999643
No 219
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=94.93 E-value=0.014 Score=53.17 Aligned_cols=23 Identities=35% Similarity=0.505 Sum_probs=20.6
Q ss_pred EEEEeccCCCchhHHHHHHHHhh
Q 009306 213 KLGIWGIGGIGKTTIAGAIFNKI 235 (538)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~~ 235 (538)
.|+|+|++|+||||+|+.++.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999998765
No 220
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.91 E-value=0.015 Score=53.17 Aligned_cols=27 Identities=15% Similarity=0.165 Sum_probs=23.7
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhhc
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKIS 236 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (538)
...+++|.|++|+|||||.+.+.....
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 356899999999999999999998765
No 221
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=94.89 E-value=0.069 Score=49.22 Aligned_cols=22 Identities=32% Similarity=0.252 Sum_probs=17.7
Q ss_pred eEEEEeccCCCchhHHHHHHHH
Q 009306 212 YKLGIWGIGGIGKTTIAGAIFN 233 (538)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~ 233 (538)
+.+.|.|+.|+||||+...+.-
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~~ 98 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFIL 98 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEeCCCCCcHHhHHHHHh
Confidence 4689999999999987665543
No 222
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=94.88 E-value=0.017 Score=54.04 Aligned_cols=26 Identities=23% Similarity=0.336 Sum_probs=23.1
Q ss_pred ceEEEEeccCCCchhHHHHHHHHhhc
Q 009306 211 VYKLGIWGIGGIGKTTIAGAIFNKIS 236 (538)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (538)
..+|+|.|+.|+||||+++.++.++.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg 52 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLN 52 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45799999999999999999998764
No 223
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=94.88 E-value=0.014 Score=53.47 Aligned_cols=25 Identities=32% Similarity=0.226 Sum_probs=22.3
Q ss_pred eEEEEeccCCCchhHHHHHHHHhhc
Q 009306 212 YKLGIWGIGGIGKTTIAGAIFNKIS 236 (538)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (538)
..|.|.|++|+||||+++.++.++.
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999998764
No 224
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=94.88 E-value=0.014 Score=54.40 Aligned_cols=26 Identities=27% Similarity=0.364 Sum_probs=22.8
Q ss_pred ceEEEEeccCCCchhHHHHHHHHhhc
Q 009306 211 VYKLGIWGIGGIGKTTIAGAIFNKIS 236 (538)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (538)
..+++|.|++|+|||||++.++.++.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg 52 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFG 52 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45799999999999999999997653
No 225
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=94.87 E-value=0.014 Score=52.71 Aligned_cols=22 Identities=45% Similarity=0.564 Sum_probs=20.0
Q ss_pred eEEEEeccCCCchhHHHHHHHH
Q 009306 212 YKLGIWGIGGIGKTTIAGAIFN 233 (538)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~ 233 (538)
.+++|+|+.|+||||+++.++.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999976
No 226
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=94.87 E-value=0.015 Score=53.37 Aligned_cols=25 Identities=28% Similarity=0.416 Sum_probs=22.3
Q ss_pred ceEEEEeccCCCchhHHHHHHHHhh
Q 009306 211 VYKLGIWGIGGIGKTTIAGAIFNKI 235 (538)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (538)
...|+|.|++|+||||+|+.++.++
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3579999999999999999999875
No 227
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=94.85 E-value=0.021 Score=55.05 Aligned_cols=29 Identities=21% Similarity=0.219 Sum_probs=24.7
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhhccc
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKISRH 238 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 238 (538)
...+++|+|++|+|||||++.++..+...
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~ 129 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL 129 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 45689999999999999999999876544
No 228
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.84 E-value=0.015 Score=51.93 Aligned_cols=26 Identities=31% Similarity=0.436 Sum_probs=22.7
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhh
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKI 235 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (538)
...+|+|+|+.|+||||+++.+...+
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhc
Confidence 35689999999999999999998763
No 229
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=94.84 E-value=0.021 Score=57.76 Aligned_cols=51 Identities=22% Similarity=0.310 Sum_probs=34.0
Q ss_pred CceeccchhHHHHHhhhc------------CCCCceEEEEeccCCCchhHHHHHHHHhhccce
Q 009306 189 DLVGVRLPMKEIESLLRT------------GSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHF 239 (538)
Q Consensus 189 ~~vGR~~~l~~l~~~L~~------------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f 239 (538)
.++|.+...+.|...+.. .....+-+.++|++|+|||++|+.++..+...|
T Consensus 16 ~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~ 78 (444)
T 1g41_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPF 78 (444)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCE
T ss_pred HhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCc
Confidence 456666666655444311 001234589999999999999999998875443
No 230
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=94.83 E-value=0.015 Score=52.94 Aligned_cols=23 Identities=35% Similarity=0.476 Sum_probs=20.5
Q ss_pred EEEEeccCCCchhHHHHHHHHhh
Q 009306 213 KLGIWGIGGIGKTTIAGAIFNKI 235 (538)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~~ 235 (538)
.|+|+|++|+||||+|+.++.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999998765
No 231
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=94.79 E-value=0.028 Score=55.36 Aligned_cols=38 Identities=26% Similarity=0.344 Sum_probs=29.7
Q ss_pred HHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhh
Q 009306 198 KEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKI 235 (538)
Q Consensus 198 ~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (538)
..|..+|..+-....++.|+|++|+|||||+..++...
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34555555444567789999999999999999999875
No 232
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.79 E-value=0.012 Score=52.88 Aligned_cols=25 Identities=28% Similarity=0.420 Sum_probs=21.9
Q ss_pred eEEEEeccCCCchhHHHHHHHHhhc
Q 009306 212 YKLGIWGIGGIGKTTIAGAIFNKIS 236 (538)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (538)
+.++|+|++|+|||||++.+...+.
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCc
Confidence 4689999999999999999987654
No 233
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.77 E-value=0.038 Score=56.11 Aligned_cols=27 Identities=30% Similarity=0.708 Sum_probs=23.3
Q ss_pred EEEEeccCCCchhHHHHHHHHhhccce
Q 009306 213 KLGIWGIGGIGKTTIAGAIFNKISRHF 239 (538)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~~~~~f 239 (538)
.++|+|++|+|||||+..+......++
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~~~~~~ 179 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHNIAQEH 179 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCccHHHHHHHhhhhhcc
Confidence 589999999999999999998766544
No 234
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=94.76 E-value=0.017 Score=54.16 Aligned_cols=27 Identities=26% Similarity=0.256 Sum_probs=23.6
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhhc
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKIS 236 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (538)
...++.|+|++|+||||+|+.+...+.
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 356799999999999999999998764
No 235
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=94.72 E-value=0.022 Score=55.11 Aligned_cols=38 Identities=24% Similarity=0.280 Sum_probs=30.6
Q ss_pred CCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEe
Q 009306 209 TNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFAR 246 (538)
Q Consensus 209 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 246 (538)
++.++|+|+|-||+||||.+..++..+......+.-+.
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~~GkkVllID 83 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIG 83 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 36789999999999999999999988776655555554
No 236
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.72 E-value=0.019 Score=53.43 Aligned_cols=26 Identities=23% Similarity=0.434 Sum_probs=22.8
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhh
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKI 235 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (538)
...+++|.|+.|+|||||++.++..+
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998754
No 237
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.71 E-value=0.017 Score=51.97 Aligned_cols=25 Identities=28% Similarity=0.207 Sum_probs=22.5
Q ss_pred ceEEEEeccCCCchhHHHHHHHHhh
Q 009306 211 VYKLGIWGIGGIGKTTIAGAIFNKI 235 (538)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (538)
...|+|.|+.|+||||+++.+...+
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3579999999999999999999876
No 238
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=94.69 E-value=0.036 Score=56.65 Aligned_cols=35 Identities=23% Similarity=0.439 Sum_probs=27.3
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhhccceeeEEEE
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFA 245 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 245 (538)
...+++|+|++|+|||||++.++..+... .+.+++
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~-~G~V~l 326 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQQ-GKSVML 326 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEE
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhhc-CCeEEE
Confidence 46789999999999999999999876543 233444
No 239
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.68 E-value=0.016 Score=52.38 Aligned_cols=27 Identities=19% Similarity=0.262 Sum_probs=23.1
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhhc
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKIS 236 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (538)
...+++|.|+.|+|||||++.+...+.
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 345799999999999999999987653
No 240
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=94.66 E-value=0.017 Score=52.66 Aligned_cols=24 Identities=29% Similarity=0.235 Sum_probs=21.7
Q ss_pred eEEEEeccCCCchhHHHHHHHHhh
Q 009306 212 YKLGIWGIGGIGKTTIAGAIFNKI 235 (538)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~~ 235 (538)
..|+|.|++|+||||+|+.++.++
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999876
No 241
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=94.65 E-value=0.013 Score=57.66 Aligned_cols=29 Identities=21% Similarity=0.048 Sum_probs=24.1
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhhccc
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKISRH 238 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 238 (538)
..+.++|+|++|+|||||++.++..+.+.
T Consensus 173 rGQr~~IvG~sG~GKTtLl~~Iar~i~~~ 201 (422)
T 3ice_A 173 RGQRGLIVAPPKAGKTMLLQNIAQSIAYN 201 (422)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHHHHHHHH
T ss_pred CCcEEEEecCCCCChhHHHHHHHHHHhhc
Confidence 34569999999999999999998876543
No 242
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=94.65 E-value=0.029 Score=52.56 Aligned_cols=38 Identities=21% Similarity=0.197 Sum_probs=29.1
Q ss_pred HHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhh
Q 009306 198 KEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKI 235 (538)
Q Consensus 198 ~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (538)
..+..+|....+....+.|+|++|.|||.+|..+++..
T Consensus 91 ~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 91 SVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp HHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred HHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 34566666442345579999999999999999999864
No 243
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=94.64 E-value=0.036 Score=54.79 Aligned_cols=40 Identities=28% Similarity=0.363 Sum_probs=29.4
Q ss_pred HHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhccc
Q 009306 199 EIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRH 238 (538)
Q Consensus 199 ~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 238 (538)
.+...+........+|+|+|.+|+|||||+..++..+...
T Consensus 67 ~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~ 106 (355)
T 3p32_A 67 QLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLIER 106 (355)
T ss_dssp HHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred HHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 3333343333467789999999999999999998876543
No 244
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.59 E-value=0.022 Score=49.12 Aligned_cols=27 Identities=26% Similarity=0.319 Sum_probs=23.6
Q ss_pred CCceEEEEeccCCCchhHHHHHHHHhh
Q 009306 209 TNVYKLGIWGIGGIGKTTIAGAIFNKI 235 (538)
Q Consensus 209 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (538)
....+++|.|+.|.|||||++.++..+
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 345689999999999999999999866
No 245
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=94.58 E-value=0.022 Score=51.61 Aligned_cols=27 Identities=19% Similarity=0.283 Sum_probs=23.7
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhhc
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKIS 236 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (538)
...+++|.|++|+||||+++.+...+.
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 356899999999999999999998765
No 246
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=94.56 E-value=0.021 Score=52.58 Aligned_cols=26 Identities=15% Similarity=0.362 Sum_probs=22.7
Q ss_pred ceEEEEeccCCCchhHHHHHHHHhhc
Q 009306 211 VYKLGIWGIGGIGKTTIAGAIFNKIS 236 (538)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (538)
..+++|.|++|+||||+++.++..+.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34799999999999999999988763
No 247
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=94.55 E-value=0.02 Score=55.44 Aligned_cols=28 Identities=21% Similarity=0.353 Sum_probs=24.3
Q ss_pred CCceEEEEeccCCCchhHHHHHHHHhhc
Q 009306 209 TNVYKLGIWGIGGIGKTTIAGAIFNKIS 236 (538)
Q Consensus 209 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (538)
....+++|.|+.|+|||||++.++..+.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 3567899999999999999999988654
No 248
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=94.54 E-value=0.017 Score=53.96 Aligned_cols=25 Identities=24% Similarity=0.375 Sum_probs=22.3
Q ss_pred eEEEEeccCCCchhHHHHHHHHhhc
Q 009306 212 YKLGIWGIGGIGKTTIAGAIFNKIS 236 (538)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (538)
..|+|+|++|+||||+++.++..+.
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3599999999999999999998764
No 249
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=94.53 E-value=0.022 Score=51.29 Aligned_cols=24 Identities=21% Similarity=0.286 Sum_probs=21.8
Q ss_pred EEEEeccCCCchhHHHHHHHHhhc
Q 009306 213 KLGIWGIGGIGKTTIAGAIFNKIS 236 (538)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~~~ 236 (538)
+|+|+|+.|+||||+++.++..+.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 799999999999999999988754
No 250
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=94.51 E-value=0.015 Score=53.06 Aligned_cols=25 Identities=36% Similarity=0.675 Sum_probs=22.1
Q ss_pred ceEEEEeccCCCchhHHHHHHHHhh
Q 009306 211 VYKLGIWGIGGIGKTTIAGAIFNKI 235 (538)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (538)
..+++|+|++|+|||||++.++...
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4569999999999999999998765
No 251
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=94.47 E-value=0.031 Score=53.60 Aligned_cols=38 Identities=13% Similarity=0.011 Sum_probs=28.4
Q ss_pred CCceEEEEeccCCCchhHHHHHHHHhhcccee-eEEEEe
Q 009306 209 TNVYKLGIWGIGGIGKTTIAGAIFNKISRHFS-GSYFAR 246 (538)
Q Consensus 209 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~-~~~~~~ 246 (538)
....+++|.|++|+|||||++.++........ .+.|+.
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~ 71 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM 71 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 34568999999999999999999987654422 344543
No 252
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.47 E-value=0.096 Score=62.35 Aligned_cols=105 Identities=17% Similarity=0.101 Sum_probs=63.3
Q ss_pred CceeccchhHHHHHhhh-cCCCCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhhcCChHHHHHHHHHH
Q 009306 189 DLVGVRLPMKEIESLLR-TGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEETCRLGDLRQQLLST 267 (538)
Q Consensus 189 ~~vGR~~~l~~l~~~L~-~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 267 (538)
...+...-...|..+|. .+-....++.|+|++|+||||||.+++......-..++|++.- ..... +. ...
T Consensus 360 ~~~~I~TG~~~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~~a~~G~~vlyis~E----~s~~~--~~---a~~ 430 (2050)
T 3cmu_A 360 DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE----HALDP--IY---ARK 430 (2050)
T ss_dssp SCCEECCSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTT----SCCCH--HH---HHH
T ss_pred CCceeeCCCHHHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEcC----CCHHH--HH---HHH
Confidence 34455556667777776 4445567899999999999999999998776554566776621 11111 11 222
Q ss_pred HhcCCC-----CCCchhhcHHHHHHHh-cCCCeEEEEecCC
Q 009306 268 LLNDGN-----VKNFLNTDLNFQSRRL-TRKKVLIVFDDVD 302 (538)
Q Consensus 268 l~~~~~-----~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~ 302 (538)
++...+ ...+.++....+.... ....-+||+|.+.
T Consensus 431 lGvd~~~L~I~~~~~~e~il~~~~~lv~~~~~~lIVIDSL~ 471 (2050)
T 3cmu_A 431 LGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVA 471 (2050)
T ss_dssp TTCCTTTCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGG
T ss_pred cCCCHHHeEEeCCCCHHHHHHHHHHHHHhcCCcEEEECCHH
Confidence 322111 1133444444444333 3567799999873
No 253
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=94.42 E-value=0.016 Score=55.44 Aligned_cols=27 Identities=15% Similarity=0.198 Sum_probs=20.3
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhhc
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKIS 236 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (538)
...+|+|+|+.|+||||+|+.+...+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 345799999999999999999988654
No 254
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=94.41 E-value=0.029 Score=54.00 Aligned_cols=29 Identities=28% Similarity=0.392 Sum_probs=24.7
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhhccc
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKISRH 238 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 238 (538)
...+++|+|+.|+||||+++.++..+...
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~ 127 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLKNE 127 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 45689999999999999999999876543
No 255
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.40 E-value=0.037 Score=64.95 Aligned_cols=102 Identities=17% Similarity=0.089 Sum_probs=60.3
Q ss_pred eccchhHHHHHhhh-cCCCCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhhcCChHHHHHHHHHHHhc
Q 009306 192 GVRLPMKEIESLLR-TGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEETCRLGDLRQQLLSTLLN 270 (538)
Q Consensus 192 GR~~~l~~l~~~L~-~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~ 270 (538)
+...-...|..+|. .+-...+++.|+|++|+||||||.+++......-..++|++.- ..... +. ...++.
T Consensus 363 ~isTGi~~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~~~~~G~~vlyis~E----~s~~~--~~---a~~lGv 433 (1706)
T 3cmw_A 363 TISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE----HALDP--IY---ARKLGV 433 (1706)
T ss_dssp EECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTT----SCCCH--HH---HHHTTC
T ss_pred eeccCcHHHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEcc----CchHH--HH---HHHcCC
Confidence 44444566777775 4444567899999999999999999998766555567777621 11111 11 222221
Q ss_pred CCC-----CCCchhhcHHHHHHHh-cCCCeEEEEecCC
Q 009306 271 DGN-----VKNFLNTDLNFQSRRL-TRKKVLIVFDDVD 302 (538)
Q Consensus 271 ~~~-----~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~ 302 (538)
..+ ...+.++....+.... ..+.-+||+|.+.
T Consensus 434 d~~~L~i~~~~~~e~~l~~l~~lv~~~~~~lVVIDSL~ 471 (1706)
T 3cmw_A 434 DIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVA 471 (1706)
T ss_dssp CGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCST
T ss_pred CHHHeEEcCCCCHHHHHHHHHHHHHhcCCCEEEECCHH
Confidence 110 0123344444444333 3567799999984
No 256
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=94.39 E-value=0.023 Score=55.35 Aligned_cols=25 Identities=24% Similarity=0.319 Sum_probs=22.6
Q ss_pred eEEEEeccCCCchhHHHHHHHHhhc
Q 009306 212 YKLGIWGIGGIGKTTIAGAIFNKIS 236 (538)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (538)
.+|+|.|++|+||||||..++..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 5799999999999999999998764
No 257
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=94.38 E-value=0.035 Score=58.04 Aligned_cols=25 Identities=36% Similarity=0.562 Sum_probs=22.1
Q ss_pred CceEEEEeccCCCchhHHHHHHHHh
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNK 234 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~ 234 (538)
...+++|.|+.|+|||||.+.++..
T Consensus 24 ~Gei~gLiGpNGaGKSTLlkiL~Gl 48 (538)
T 3ozx_A 24 NNTILGVLGKNGVGKTTVLKILAGE 48 (538)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Confidence 4568999999999999999998864
No 258
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=94.38 E-value=0.12 Score=54.46 Aligned_cols=33 Identities=18% Similarity=-0.012 Sum_probs=25.5
Q ss_pred ceEEEEeccCCCchhHHHHHHHHhhccceeeEE
Q 009306 211 VYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSY 243 (538)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~ 243 (538)
.+++.|+|++|.||||++..+...+......+.
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl 236 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLAESLGLEVG 236 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEE
Confidence 357899999999999999999887654433333
No 259
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=94.36 E-value=0.024 Score=55.02 Aligned_cols=26 Identities=19% Similarity=0.252 Sum_probs=23.1
Q ss_pred ceEEEEeccCCCchhHHHHHHHHhhc
Q 009306 211 VYKLGIWGIGGIGKTTIAGAIFNKIS 236 (538)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (538)
.++|+|.|+.|+|||||+..++.++.
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHCC
Confidence 45899999999999999999998764
No 260
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.34 E-value=0.038 Score=64.77 Aligned_cols=102 Identities=19% Similarity=0.132 Sum_probs=58.6
Q ss_pred eccchhHHHHHhhh-cCCCCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhhcCChHHHHHHHHHHHhc
Q 009306 192 GVRLPMKEIESLLR-TGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEETCRLGDLRQQLLSTLLN 270 (538)
Q Consensus 192 GR~~~l~~l~~~L~-~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~ 270 (538)
+-..-..+|..+|. .+-....++.|.|++|+||||||.+++......-..+.|++. ... ...+. ...++.
T Consensus 712 ~i~TG~~eLD~lLg~GGl~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~----Ees--~~ql~---A~~lGv 782 (1706)
T 3cmw_A 712 TISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA----EHA--LDPIY---ARKLGV 782 (1706)
T ss_dssp EECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECT----TSC--CCHHH---HHHTTC
T ss_pred ccccCcHHHHHHhccCCcCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEec----cch--HHHHH---HHHcCC
Confidence 33444556666665 333456689999999999999999999876654445666651 111 11111 222221
Q ss_pred CCC-----CCCchhhcHHHHHHHh-cCCCeEEEEecCC
Q 009306 271 DGN-----VKNFLNTDLNFQSRRL-TRKKVLIVFDDVD 302 (538)
Q Consensus 271 ~~~-----~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~ 302 (538)
... ...+.++....+++.. ..++-+||+|.+.
T Consensus 783 d~~~L~i~~~~~leei~~~l~~lv~~~~~~lVVIDsLq 820 (1706)
T 3cmw_A 783 DIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVA 820 (1706)
T ss_dssp CGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCST
T ss_pred ChhheEEecCCcHHHHHHHHHHHHHccCCCEEEEechh
Confidence 100 0123444444444333 3567899999984
No 261
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=94.34 E-value=0.025 Score=54.72 Aligned_cols=25 Identities=24% Similarity=0.274 Sum_probs=22.4
Q ss_pred eEEEEeccCCCchhHHHHHHHHhhc
Q 009306 212 YKLGIWGIGGIGKTTIAGAIFNKIS 236 (538)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (538)
++++|+|++|+||||||..++.++.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 5799999999999999999998753
No 262
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=94.26 E-value=0.027 Score=54.06 Aligned_cols=26 Identities=19% Similarity=0.267 Sum_probs=22.7
Q ss_pred ceEEEEeccCCCchhHHHHHHHHhhc
Q 009306 211 VYKLGIWGIGGIGKTTIAGAIFNKIS 236 (538)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (538)
.++++|.|++|+||||||..++.++.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~ 28 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLN 28 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCc
Confidence 35789999999999999999998753
No 263
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=94.26 E-value=0.024 Score=51.89 Aligned_cols=23 Identities=30% Similarity=0.429 Sum_probs=21.0
Q ss_pred EEEEeccCCCchhHHHHHHHHhh
Q 009306 213 KLGIWGIGGIGKTTIAGAIFNKI 235 (538)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~~ 235 (538)
.|+|.|++|+||||+|+.++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999998876
No 264
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=94.25 E-value=0.029 Score=51.76 Aligned_cols=25 Identities=24% Similarity=0.272 Sum_probs=22.3
Q ss_pred eEEEEeccCCCchhHHHHHHHHhhc
Q 009306 212 YKLGIWGIGGIGKTTIAGAIFNKIS 236 (538)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (538)
..|+|.|++|+||||+|+.++.++.
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4699999999999999999998764
No 265
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=94.24 E-value=0.044 Score=49.08 Aligned_cols=34 Identities=21% Similarity=0.230 Sum_probs=27.1
Q ss_pred EEEEeccCCCchhHHHHHHHHhhccceeeEEEEe
Q 009306 213 KLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFAR 246 (538)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 246 (538)
.|+|-|.-|+||||.++.+++.+......+++..
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~tr 35 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 4788899999999999999998876654455544
No 266
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=94.21 E-value=0.025 Score=51.37 Aligned_cols=23 Identities=30% Similarity=0.300 Sum_probs=20.8
Q ss_pred EEEEeccCCCchhHHHHHHHHhh
Q 009306 213 KLGIWGIGGIGKTTIAGAIFNKI 235 (538)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~~ 235 (538)
.|+|.|++|+||||+|+.++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999998875
No 267
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.20 E-value=0.018 Score=53.04 Aligned_cols=25 Identities=28% Similarity=0.304 Sum_probs=16.3
Q ss_pred ceEEEEeccCCCchhHHHHHHH-Hhh
Q 009306 211 VYKLGIWGIGGIGKTTIAGAIF-NKI 235 (538)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~-~~~ 235 (538)
..+++|+|+.|+|||||++.++ ...
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4579999999999999999998 654
No 268
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=94.17 E-value=0.044 Score=52.95 Aligned_cols=27 Identities=30% Similarity=0.338 Sum_probs=23.8
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhhc
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKIS 236 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (538)
...+++|.|+.|+|||||++.+...+.
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 457899999999999999999988654
No 269
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=94.17 E-value=0.05 Score=50.02 Aligned_cols=28 Identities=21% Similarity=0.380 Sum_probs=24.7
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhhcc
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKISR 237 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 237 (538)
...+|+|.|++|+||||+++.++..+..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 4567999999999999999999998765
No 270
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.16 E-value=0.028 Score=53.50 Aligned_cols=24 Identities=42% Similarity=0.750 Sum_probs=21.4
Q ss_pred CceEEEEeccCCCchhHHHHHHHH
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFN 233 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~ 233 (538)
...+|+|+|++|+||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999983
No 271
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.16 E-value=0.026 Score=50.28 Aligned_cols=26 Identities=23% Similarity=0.215 Sum_probs=22.5
Q ss_pred ceEEEEeccCCCchhHHHHHHHHhhc
Q 009306 211 VYKLGIWGIGGIGKTTIAGAIFNKIS 236 (538)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (538)
.+.+.|+|++|+||||||.+++.+..
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~ 59 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH 59 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC
Confidence 35689999999999999999998743
No 272
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=94.15 E-value=0.03 Score=50.95 Aligned_cols=23 Identities=35% Similarity=0.446 Sum_probs=20.7
Q ss_pred ceEEEEeccCCCchhHHHHHHHH
Q 009306 211 VYKLGIWGIGGIGKTTIAGAIFN 233 (538)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~ 233 (538)
..+|+|+|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999876
No 273
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=94.13 E-value=0.2 Score=51.56 Aligned_cols=37 Identities=19% Similarity=0.128 Sum_probs=26.9
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEe
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFAR 246 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 246 (538)
..++|+|+|.+|+||||++..++..+...-..+..+.
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd 136 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLIC 136 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEe
Confidence 4678999999999999999999987665433333333
No 274
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=94.10 E-value=0.033 Score=51.49 Aligned_cols=26 Identities=27% Similarity=0.153 Sum_probs=22.0
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhh
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKI 235 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (538)
...+++|.|+.|+|||||.+.++.-.
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 34579999999999999999888643
No 275
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.08 E-value=0.038 Score=48.42 Aligned_cols=27 Identities=22% Similarity=0.305 Sum_probs=23.5
Q ss_pred ceEEEEeccCCCchhHHHHHHHHhhcc
Q 009306 211 VYKLGIWGIGGIGKTTIAGAIFNKISR 237 (538)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~~ 237 (538)
.++++|+|++|+|||||+..+...+..
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~ 32 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCA 32 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccc
Confidence 567999999999999999999987643
No 276
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=94.03 E-value=0.035 Score=53.11 Aligned_cols=26 Identities=19% Similarity=0.110 Sum_probs=23.0
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhh
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKI 235 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (538)
..++++|.|+.|+||||||..++.++
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhC
Confidence 35689999999999999999999875
No 277
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=94.00 E-value=0.04 Score=51.06 Aligned_cols=24 Identities=21% Similarity=0.187 Sum_probs=21.6
Q ss_pred eEEEEeccCCCchhHHHHHHHHhh
Q 009306 212 YKLGIWGIGGIGKTTIAGAIFNKI 235 (538)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~~ 235 (538)
.+++|.|+.|+|||||.+.++.-.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 689999999999999999998754
No 278
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.00 E-value=0.067 Score=48.54 Aligned_cols=28 Identities=18% Similarity=0.211 Sum_probs=24.6
Q ss_pred ceEEEEeccCCCchhHHHHHHHHhhccc
Q 009306 211 VYKLGIWGIGGIGKTTIAGAIFNKISRH 238 (538)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 238 (538)
..+|+|.|+.|+||||+++.+...+...
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~ 33 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRER 33 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 4579999999999999999999987654
No 279
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=93.96 E-value=0.025 Score=50.36 Aligned_cols=24 Identities=25% Similarity=0.309 Sum_probs=21.3
Q ss_pred EEEEeccCCCchhHHHHHHHHhhc
Q 009306 213 KLGIWGIGGIGKTTIAGAIFNKIS 236 (538)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~~~ 236 (538)
+++|+|+.|+|||||++.++..+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhcc
Confidence 589999999999999999988653
No 280
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=93.94 E-value=0.042 Score=48.65 Aligned_cols=25 Identities=24% Similarity=-0.086 Sum_probs=21.3
Q ss_pred eEEEEeccCCCchhHHHHHHHHhhc
Q 009306 212 YKLGIWGIGGIGKTTIAGAIFNKIS 236 (538)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (538)
.++.|+|+.|+||||++..++.+..
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~ 28 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYK 28 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4688999999999999988877654
No 281
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=93.93 E-value=0.041 Score=54.22 Aligned_cols=29 Identities=28% Similarity=0.392 Sum_probs=24.8
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhhccc
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKISRH 238 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 238 (538)
...+++|+|+.|+||||+++.++..+...
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~ 184 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKNE 184 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhcccc
Confidence 45789999999999999999999876543
No 282
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=93.85 E-value=0.035 Score=57.34 Aligned_cols=28 Identities=4% Similarity=0.099 Sum_probs=24.7
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhhcc
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKISR 237 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 237 (538)
...+|.|+|++|+||||+|+.++.++..
T Consensus 394 ~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 394 QGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp CCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred cceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 3468999999999999999999998764
No 283
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=93.84 E-value=0.097 Score=53.04 Aligned_cols=54 Identities=30% Similarity=0.466 Sum_probs=34.2
Q ss_pred ceEEEEeccCCCchhHHHHHHHHhhccce-eeEEEEeehhhhhhcCChHHHHHHHHHH
Q 009306 211 VYKLGIWGIGGIGKTTIAGAIFNKISRHF-SGSYFARNVREAEETCRLGDLRQQLLST 267 (538)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f-~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 267 (538)
.+.++|.|.+|+|||+|+..+++.+.... +.++|.- +.+ ......++.+.+...
T Consensus 153 GQr~~Ifgg~G~GKT~L~~~i~~~~~~~~~~v~V~~~-iGE--R~rEv~e~~~~~~~~ 207 (482)
T 2ck3_D 153 GGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAG-VGE--RTREGNDLYHEMIES 207 (482)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHTTTTCSSEEEEEE-ESC--CHHHHHHHHHHHHHH
T ss_pred CCeeeeecCCCCChHHHHHHHHHhhHhhCCCEEEEEE-CCC--cchHHHHHHHHhhhc
Confidence 34589999999999999999998764432 3344432 222 123345555555543
No 284
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=93.81 E-value=0.02 Score=50.06 Aligned_cols=27 Identities=26% Similarity=0.350 Sum_probs=23.1
Q ss_pred eEEEEeccCCCchhHHHHHHHHhhccc
Q 009306 212 YKLGIWGIGGIGKTTIAGAIFNKISRH 238 (538)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~~~~~ 238 (538)
++++|+|++|+|||||++.+...+...
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~ 29 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRER 29 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 468999999999999999998876543
No 285
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=93.81 E-value=0.037 Score=50.70 Aligned_cols=25 Identities=24% Similarity=0.074 Sum_probs=21.5
Q ss_pred ceEEEEeccCCCchhHHHHHHHHhh
Q 009306 211 VYKLGIWGIGGIGKTTIAGAIFNKI 235 (538)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (538)
..+++|.|+.|+|||||.+.++.-.
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4579999999999999999988643
No 286
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=93.78 E-value=0.047 Score=54.21 Aligned_cols=29 Identities=24% Similarity=0.112 Sum_probs=24.4
Q ss_pred CCCCceEEEEeccCCCchhHHHHHHHHhh
Q 009306 207 GSTNVYKLGIWGIGGIGKTTIAGAIFNKI 235 (538)
Q Consensus 207 ~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (538)
+-+....++|+|++|+|||||++.++...
T Consensus 165 ~i~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 165 NIPKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 33456689999999999999999999754
No 287
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=93.77 E-value=0.1 Score=55.24 Aligned_cols=25 Identities=36% Similarity=0.384 Sum_probs=22.0
Q ss_pred ceEEEEeccCCCchhHHHHHHHHhh
Q 009306 211 VYKLGIWGIGGIGKTTIAGAIFNKI 235 (538)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (538)
..+++|.|+.|+|||||++.++...
T Consensus 382 Gei~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 382 GEVIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4579999999999999999998754
No 288
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=93.75 E-value=0.03 Score=50.66 Aligned_cols=23 Identities=30% Similarity=0.091 Sum_probs=20.6
Q ss_pred eEEEEeccCCCchhHHHHHHHHh
Q 009306 212 YKLGIWGIGGIGKTTIAGAIFNK 234 (538)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~ 234 (538)
.+++|.|+.|+|||||++.++.-
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999998865
No 289
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=93.71 E-value=0.06 Score=49.00 Aligned_cols=33 Identities=18% Similarity=0.003 Sum_probs=25.5
Q ss_pred EEEEeccCCCchhHHHHHHHHhhccceeeEEEE
Q 009306 213 KLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFA 245 (538)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 245 (538)
.|.+.|.||+||||++..++.........+.++
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~ 40 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAG 40 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEE
Confidence 478899999999999999998876654334443
No 290
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=93.66 E-value=0.044 Score=51.59 Aligned_cols=26 Identities=27% Similarity=0.174 Sum_probs=22.2
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhh
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKI 235 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (538)
...+++|.|+.|+|||||.+.++.-+
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44579999999999999999988643
No 291
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=93.66 E-value=0.23 Score=52.46 Aligned_cols=26 Identities=27% Similarity=0.281 Sum_probs=22.1
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhh
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKI 235 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (538)
....++|+|+.|.|||||++.++.-+
T Consensus 368 ~G~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 368 QGKTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34579999999999999999988643
No 292
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=93.64 E-value=0.068 Score=48.68 Aligned_cols=29 Identities=21% Similarity=0.373 Sum_probs=24.2
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhhccc
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKISRH 238 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 238 (538)
....++|+|.+|+|||||+..++......
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~ 65 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDK 65 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccC
Confidence 46778999999999999999999875433
No 293
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=93.57 E-value=0.038 Score=53.06 Aligned_cols=23 Identities=30% Similarity=0.274 Sum_probs=20.9
Q ss_pred eEEEEeccCCCchhHHHHHHHHh
Q 009306 212 YKLGIWGIGGIGKTTIAGAIFNK 234 (538)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~ 234 (538)
.+|.|.|++|+||||+|+.+..+
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999999999875
No 294
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=93.56 E-value=0.047 Score=51.37 Aligned_cols=26 Identities=19% Similarity=0.095 Sum_probs=22.2
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhh
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKI 235 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (538)
...+++|.|+.|+|||||++.++.-+
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 44579999999999999999988643
No 295
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=93.55 E-value=0.11 Score=46.35 Aligned_cols=35 Identities=26% Similarity=0.166 Sum_probs=26.8
Q ss_pred eEEEEe-ccCCCchhHHHHHHHHhhccceeeEEEEe
Q 009306 212 YKLGIW-GIGGIGKTTIAGAIFNKISRHFSGSYFAR 246 (538)
Q Consensus 212 ~~v~I~-G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 246 (538)
++|+|+ +-||+||||+|..++..+......+..+.
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD 37 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSRSGYNIAVVD 37 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEE
Confidence 467777 67999999999999998776544455554
No 296
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=93.51 E-value=0.044 Score=51.89 Aligned_cols=25 Identities=24% Similarity=0.255 Sum_probs=21.6
Q ss_pred ceEEEEeccCCCchhHHHHHHHHhh
Q 009306 211 VYKLGIWGIGGIGKTTIAGAIFNKI 235 (538)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (538)
..+++|.|+.|+|||||++.++.-+
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCC
Confidence 4579999999999999999988643
No 297
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=93.47 E-value=0.049 Score=50.27 Aligned_cols=26 Identities=27% Similarity=0.363 Sum_probs=22.9
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhh
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKI 235 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (538)
...+|+|+|+.|+||||+++.++..+
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45679999999999999999998765
No 298
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=93.46 E-value=0.044 Score=51.11 Aligned_cols=28 Identities=25% Similarity=0.247 Sum_probs=23.3
Q ss_pred ceEEEEeccCCCchhHHHHHHHHhhccc
Q 009306 211 VYKLGIWGIGGIGKTTIAGAIFNKISRH 238 (538)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 238 (538)
..+++|.|+.|+|||||.+.++.-+...
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~Gl~~p~ 53 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAGMTSGK 53 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSCCE
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCCC
Confidence 4479999999999999999988765443
No 299
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=93.45 E-value=0.039 Score=55.81 Aligned_cols=26 Identities=23% Similarity=0.187 Sum_probs=23.1
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhh
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKI 235 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (538)
...+|.|+|++|+||||+|+.++.++
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 46789999999999999999988765
No 300
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=93.42 E-value=0.13 Score=52.40 Aligned_cols=52 Identities=31% Similarity=0.415 Sum_probs=33.9
Q ss_pred eEEEEeccCCCchhHHHHHHHHhhccc-eeeEEEEeehhhhhhcCChHHHHHHHHH
Q 009306 212 YKLGIWGIGGIGKTTIAGAIFNKISRH-FSGSYFARNVREAEETCRLGDLRQQLLS 266 (538)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~l~~~l~~ 266 (538)
+.++|.|.+|+|||+|+..+++.+... -+.++|.- +.+ ......++.+.+..
T Consensus 166 qr~gIfgg~GvGKT~L~~~l~~~~a~~~~~v~V~~~-iGE--R~rEv~e~~~~~~~ 218 (498)
T 1fx0_B 166 GKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGG-VGE--RTREGNDLYMEMKE 218 (498)
T ss_dssp CCEEEEECSSSSHHHHHHHHHHHTTTTCSSCEEEEE-ESC--CSHHHHHHHHHHHH
T ss_pred CeEEeecCCCCCchHHHHHHHHHHHhhCCCEEEEEE-ccc--CcHHHHHHHHhhhc
Confidence 348999999999999999999986543 34455543 222 12234555555554
No 301
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=93.37 E-value=0.06 Score=51.58 Aligned_cols=36 Identities=19% Similarity=0.108 Sum_probs=27.5
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhhccceeeEEEE
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFA 245 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 245 (538)
...+++|+|++|+||||++..++..++..-..+.++
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~ 132 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLV 132 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEe
Confidence 356889999999999999999998776543334443
No 302
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=93.37 E-value=0.053 Score=50.93 Aligned_cols=27 Identities=26% Similarity=0.319 Sum_probs=22.8
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhhc
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKIS 236 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (538)
...+++|.|+.|+|||||++.++.-+.
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 71 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRFYD 71 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 345799999999999999999987543
No 303
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=93.35 E-value=0.077 Score=48.93 Aligned_cols=36 Identities=19% Similarity=0.261 Sum_probs=27.6
Q ss_pred ceEEEEeccCCCchhHHHHHHHHhhccc-eeeEEEEe
Q 009306 211 VYKLGIWGIGGIGKTTIAGAIFNKISRH-FSGSYFAR 246 (538)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~ 246 (538)
..+|+|.|+.|+||||+++.++..+... +..+....
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~r 63 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTR 63 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeeec
Confidence 4579999999999999999999987654 33244443
No 304
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=93.34 E-value=0.058 Score=51.18 Aligned_cols=27 Identities=22% Similarity=0.217 Sum_probs=23.1
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhhc
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKIS 236 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (538)
...++.|.|++|+|||||+..++..+.
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 455799999999999999999987554
No 305
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=93.33 E-value=0.076 Score=49.67 Aligned_cols=27 Identities=26% Similarity=0.327 Sum_probs=23.8
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhhc
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKIS 236 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (538)
...++.+.|.||+||||++..++..+.
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 456788999999999999999998766
No 306
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=93.31 E-value=0.041 Score=51.11 Aligned_cols=25 Identities=24% Similarity=0.145 Sum_probs=21.9
Q ss_pred CceEEEEeccCCCchhHHHHHHHHh
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNK 234 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~ 234 (538)
...+++|.|+.|+|||||.+.++.-
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4567999999999999999998864
No 307
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=93.30 E-value=0.05 Score=51.00 Aligned_cols=26 Identities=27% Similarity=0.216 Sum_probs=22.0
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhh
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKI 235 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (538)
...+++|.|+.|+|||||.+.++.-+
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34579999999999999999988643
No 308
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=93.26 E-value=0.079 Score=51.52 Aligned_cols=36 Identities=31% Similarity=0.262 Sum_probs=28.4
Q ss_pred ceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEe
Q 009306 211 VYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFAR 246 (538)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 246 (538)
..++...|-||+||||+|..++..+......+..++
T Consensus 14 ~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD 49 (324)
T 3zq6_A 14 TTFVFIGGKGGVGKTTISAATALWMARSGKKTLVIS 49 (324)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEe
Confidence 466777899999999999999998876644555554
No 309
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=93.26 E-value=0.044 Score=49.79 Aligned_cols=25 Identities=32% Similarity=0.392 Sum_probs=21.4
Q ss_pred ceEEEEeccCCCchhHHHHHHHHhh
Q 009306 211 VYKLGIWGIGGIGKTTIAGAIFNKI 235 (538)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (538)
..+++|.|+.|+|||||.+.++.-.
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3469999999999999999988644
No 310
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=93.25 E-value=0.056 Score=51.13 Aligned_cols=26 Identities=27% Similarity=0.263 Sum_probs=22.2
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhh
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKI 235 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (538)
...+++|.|+.|+|||||++.++.-+
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34579999999999999999988643
No 311
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=93.25 E-value=0.073 Score=48.76 Aligned_cols=28 Identities=25% Similarity=0.265 Sum_probs=21.7
Q ss_pred ceEEEEeccCCCchhHHHHHHHHhhccc
Q 009306 211 VYKLGIWGIGGIGKTTIAGAIFNKISRH 238 (538)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 238 (538)
...|+|.|+.|+||||+++.+++.+...
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l~~~ 52 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRLQER 52 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 4579999999999999999999987654
No 312
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.24 E-value=0.053 Score=50.27 Aligned_cols=24 Identities=33% Similarity=0.313 Sum_probs=21.2
Q ss_pred ceEEEEeccCCCchhHHHHHHHHh
Q 009306 211 VYKLGIWGIGGIGKTTIAGAIFNK 234 (538)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~ 234 (538)
..+++|.|+.|+|||||.+.++.-
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457999999999999999998864
No 313
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=93.23 E-value=0.066 Score=51.39 Aligned_cols=27 Identities=15% Similarity=0.260 Sum_probs=23.3
Q ss_pred CCceEEEEeccCCCchhHHHHHHHHhh
Q 009306 209 TNVYKLGIWGIGGIGKTTIAGAIFNKI 235 (538)
Q Consensus 209 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (538)
+...+++|+|++|.|||||++.+..-+
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 345679999999999999999998765
No 314
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=93.22 E-value=0.047 Score=51.55 Aligned_cols=25 Identities=24% Similarity=0.330 Sum_probs=21.9
Q ss_pred CceEEEEeccCCCchhHHHHHHHHh
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNK 234 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~ 234 (538)
...+++|.|+.|+|||||++.++.-
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457999999999999999999875
No 315
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=93.20 E-value=0.076 Score=48.17 Aligned_cols=29 Identities=24% Similarity=0.357 Sum_probs=24.7
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhhccc
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKISRH 238 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 238 (538)
..+.++|+|.+|+|||||+..+.......
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~ 57 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNE 57 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccC
Confidence 46789999999999999999999875444
No 316
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.19 E-value=0.058 Score=50.49 Aligned_cols=26 Identities=35% Similarity=0.353 Sum_probs=22.2
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhh
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKI 235 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (538)
...+++|.|+.|+|||||.+.++.-.
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 34579999999999999999988643
No 317
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=93.18 E-value=0.066 Score=51.57 Aligned_cols=37 Identities=22% Similarity=0.265 Sum_probs=29.4
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEe
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFAR 246 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 246 (538)
..++|+|+|-||+||||+|..++..+......+..++
T Consensus 40 ~~~vI~v~~KGGvGKTT~a~nLA~~La~~G~~VlliD 76 (307)
T 3end_A 40 GAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIG 76 (307)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEe
Confidence 4678888899999999999999998776544455554
No 318
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=93.17 E-value=0.18 Score=45.48 Aligned_cols=108 Identities=14% Similarity=0.058 Sum_probs=52.8
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhhcCChHHHHHHHHHHHhcCCCCC--CchhhcHHHHHH
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEETCRLGDLRQQLLSTLLNDGNVK--NFLNTDLNFQSR 287 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~--~~~~~~~~~l~~ 287 (538)
...+..++|+-|.||||.+...+.+...+...++.+..... ...+-.. +.+.++...... ....+ +.+
T Consensus 27 ~G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d--~R~ge~~----i~s~~g~~~~a~~~~~~~~----~~~ 96 (214)
T 2j9r_A 27 NGWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCID--NRYSEED----VVSHNGLKVKAVPVSASKD----IFK 96 (214)
T ss_dssp SCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC-----------------------CCEEECSSGGG----GGG
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccC--CcchHHH----HHhhcCCeeEEeecCCHHH----HHH
Confidence 35688999999999999999998877655444444431111 1111112 222222111100 11111 112
Q ss_pred HhcCCCeEEEEecCC--ChHHHHHHhcCcCCCCCCCEEEEeccch
Q 009306 288 RLTRKKVLIVFDDVD--HPRQIKILVGRLDLFASGSRIIITTRDR 330 (538)
Q Consensus 288 ~l~~k~~LlVlDdv~--~~~~~~~l~~~l~~~~~~~~iiiTtR~~ 330 (538)
.+.++--+|+||++. +.++++.+.... ..+..||+|.++.
T Consensus 97 ~~~~~~dvViIDEaQF~~~~~V~~l~~l~---~~~~~Vi~~Gl~~ 138 (214)
T 2j9r_A 97 HITEEMDVIAIDEVQFFDGDIVEVVQVLA---NRGYRVIVAGLDQ 138 (214)
T ss_dssp GCCSSCCEEEECCGGGSCTTHHHHHHHHH---HTTCEEEEEECSB
T ss_pred HHhcCCCEEEEECcccCCHHHHHHHHHHh---hCCCEEEEEeccc
Confidence 222233499999983 334454433211 2377899998853
No 319
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=93.17 E-value=0.045 Score=51.11 Aligned_cols=24 Identities=21% Similarity=0.273 Sum_probs=21.4
Q ss_pred ceEEEEeccCCCchhHHHHHHHHh
Q 009306 211 VYKLGIWGIGGIGKTTIAGAIFNK 234 (538)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~ 234 (538)
..+++|.|+.|+|||||++.++.-
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457999999999999999999874
No 320
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=93.17 E-value=0.055 Score=50.40 Aligned_cols=25 Identities=32% Similarity=0.336 Sum_probs=21.6
Q ss_pred ceEEEEeccCCCchhHHHHHHHHhh
Q 009306 211 VYKLGIWGIGGIGKTTIAGAIFNKI 235 (538)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (538)
..+++|.|+.|+|||||++.++.-+
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4579999999999999999987643
No 321
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=93.16 E-value=0.082 Score=48.28 Aligned_cols=28 Identities=29% Similarity=0.310 Sum_probs=24.9
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhhcc
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKISR 237 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 237 (538)
...+|+|.|+.|+||||+++.+.+.+..
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4568999999999999999999998765
No 322
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=93.13 E-value=0.095 Score=47.52 Aligned_cols=35 Identities=26% Similarity=0.390 Sum_probs=26.9
Q ss_pred eEEEEeccCCCchhHHHHHHHHhhccc-eeeEEEEe
Q 009306 212 YKLGIWGIGGIGKTTIAGAIFNKISRH-FSGSYFAR 246 (538)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~ 246 (538)
.+|+|.|+.|+||||+++.++..+... +..+.+..
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~~r 39 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTR 39 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCCcceeee
Confidence 478999999999999999999987654 32344433
No 323
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=93.13 E-value=0.052 Score=53.96 Aligned_cols=25 Identities=24% Similarity=0.368 Sum_probs=22.4
Q ss_pred eEEEEeccCCCchhHHHHHHHHhhc
Q 009306 212 YKLGIWGIGGIGKTTIAGAIFNKIS 236 (538)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (538)
++|+|.|++|+||||||..++..+.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC
Confidence 5789999999999999999998764
No 324
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=93.12 E-value=0.048 Score=51.44 Aligned_cols=25 Identities=24% Similarity=0.272 Sum_probs=21.6
Q ss_pred CceEEEEeccCCCchhHHHHHHHHh
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNK 234 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~ 234 (538)
...+++|.|+.|+|||||++.++.-
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Confidence 3457999999999999999998864
No 325
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=93.06 E-value=0.075 Score=49.99 Aligned_cols=35 Identities=23% Similarity=0.348 Sum_probs=27.5
Q ss_pred eEEEEeccCCCchhHHHHHHHHhhccceeeEEEEe
Q 009306 212 YKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFAR 246 (538)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 246 (538)
++|+|.|-||+||||+|..++..+......+..++
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~G~~VlliD 36 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVG 36 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHCCCcEEEEc
Confidence 46778899999999999999998876544455554
No 326
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=93.03 E-value=0.058 Score=51.21 Aligned_cols=26 Identities=27% Similarity=0.332 Sum_probs=22.1
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhh
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKI 235 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (538)
...+++|.|+.|+|||||.+.++.-+
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34579999999999999999988644
No 327
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=93.02 E-value=0.046 Score=55.37 Aligned_cols=36 Identities=25% Similarity=0.203 Sum_probs=28.0
Q ss_pred ceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEe
Q 009306 211 VYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFAR 246 (538)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 246 (538)
.++|+|+|++|+||||++..++..+......+.++.
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~ 134 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIA 134 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 467999999999999999999987765533444443
No 328
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=92.91 E-value=0.05 Score=56.89 Aligned_cols=29 Identities=24% Similarity=0.416 Sum_probs=24.9
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhhccc
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKISRH 238 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 238 (538)
...+++|+|++|+|||||++.++..+...
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L~~~ 396 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARLMEM 396 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHHHTT
T ss_pred cceEEEEECCCCChHHHHHHHHHHhhccc
Confidence 34679999999999999999999887543
No 329
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=92.89 E-value=0.063 Score=49.71 Aligned_cols=26 Identities=23% Similarity=0.257 Sum_probs=23.0
Q ss_pred ceEEEEeccCCCchhHHHHHHHHhhc
Q 009306 211 VYKLGIWGIGGIGKTTIAGAIFNKIS 236 (538)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (538)
...|+|.|..|+||||+++.++..+.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 35799999999999999999998764
No 330
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=92.87 E-value=0.068 Score=50.37 Aligned_cols=26 Identities=27% Similarity=0.199 Sum_probs=22.0
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhh
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKI 235 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (538)
...+++|.|+.|+|||||.+.++.-+
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34579999999999999999988643
No 331
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=92.87 E-value=0.067 Score=46.35 Aligned_cols=24 Identities=25% Similarity=0.356 Sum_probs=21.2
Q ss_pred ceEEEEeccCCCchhHHHHHHHHh
Q 009306 211 VYKLGIWGIGGIGKTTIAGAIFNK 234 (538)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~ 234 (538)
.+-+.|.|++|+||||||.++..+
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 345899999999999999999885
No 332
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=92.82 E-value=0.13 Score=50.55 Aligned_cols=39 Identities=21% Similarity=0.172 Sum_probs=29.5
Q ss_pred CCCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEe
Q 009306 208 STNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFAR 246 (538)
Q Consensus 208 ~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 246 (538)
.+...++.+.|-||+||||+|..++..++..-..+..++
T Consensus 23 ~~~~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD 61 (349)
T 3ug7_A 23 KDGTKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVS 61 (349)
T ss_dssp SCSCEEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEE
T ss_pred cCCCEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEe
Confidence 345667777899999999999999998776644455554
No 333
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=92.75 E-value=0.5 Score=50.14 Aligned_cols=26 Identities=27% Similarity=0.199 Sum_probs=21.8
Q ss_pred ceEEEEeccCCCchhHHHHHHHHhhc
Q 009306 211 VYKLGIWGIGGIGKTTIAGAIFNKIS 236 (538)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (538)
.+.+.|+|++|.||||++..+...+.
T Consensus 164 ~~~~vi~G~pGTGKTt~l~~ll~~l~ 189 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTVAKLLAALI 189 (608)
T ss_dssp BSEEEEECCTTSTHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHHH
Confidence 35799999999999999988876554
No 334
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=92.70 E-value=0.12 Score=50.60 Aligned_cols=29 Identities=34% Similarity=0.440 Sum_probs=24.5
Q ss_pred CCceEEEEeccCCCchhHHHHHHHHhhcc
Q 009306 209 TNVYKLGIWGIGGIGKTTIAGAIFNKISR 237 (538)
Q Consensus 209 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 237 (538)
....+++|+|.+|.|||||+..++..+..
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~~~ 82 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLLIR 82 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 45678999999999999999999876543
No 335
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=92.69 E-value=0.13 Score=50.36 Aligned_cols=28 Identities=29% Similarity=0.520 Sum_probs=23.9
Q ss_pred CCceEEEEeccCCCchhHHHHHHHHhhc
Q 009306 209 TNVYKLGIWGIGGIGKTTIAGAIFNKIS 236 (538)
Q Consensus 209 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (538)
....+++|.|++|+|||||.+.+...+.
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~~ 80 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLLT 80 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhh
Confidence 3567899999999999999999987554
No 336
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=92.51 E-value=0.068 Score=47.40 Aligned_cols=25 Identities=20% Similarity=0.440 Sum_probs=21.5
Q ss_pred ceEEEEeccCCCchhHHHHHHHHhh
Q 009306 211 VYKLGIWGIGGIGKTTIAGAIFNKI 235 (538)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (538)
.-.++|.|++|+|||||.+.+....
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 3468999999999999999998753
No 337
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=92.50 E-value=0.77 Score=43.42 Aligned_cols=39 Identities=10% Similarity=0.092 Sum_probs=25.4
Q ss_pred CCCc--chHHHHHHHHhcceEEEEeccCcccchhhHHHHHHH
Q 009306 56 RGDE--ISQSLLDAIEASSISIIIFSESYASSRWCLDELLKI 95 (538)
Q Consensus 56 ~g~~--~~~~i~~~i~~s~~~i~v~S~~y~~s~~c~~El~~~ 95 (538)
||.. ...++...+++++++|.|+.-.--.+..| .++...
T Consensus 7 PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~-~~l~~~ 47 (282)
T 1puj_A 7 PGHMAKARREVTEKLKLIDIVYELVDARIPMSSRN-PMIEDI 47 (282)
T ss_dssp --CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSC-HHHHHH
T ss_pred chHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCC-HHHHHH
Confidence 5533 45788899999999999998755444444 244443
No 338
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=92.48 E-value=0.081 Score=47.53 Aligned_cols=25 Identities=16% Similarity=0.089 Sum_probs=23.0
Q ss_pred eEEEEeccCCCchhHHHHHHHHhhc
Q 009306 212 YKLGIWGIGGIGKTTIAGAIFNKIS 236 (538)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (538)
.+|+|.|+.|+||||+++.++.++.
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg 31 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYN 31 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999999875
No 339
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=92.44 E-value=0.067 Score=52.58 Aligned_cols=25 Identities=32% Similarity=0.231 Sum_probs=21.8
Q ss_pred CceEEEEeccCCCchhHHHHHHHHh
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNK 234 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~ 234 (538)
...+++|.|+.|+|||||.+.++--
T Consensus 29 ~Ge~~~llGpsGsGKSTLLr~iaGl 53 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTLLRCLAGF 53 (359)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcC
Confidence 3457999999999999999999874
No 340
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=92.39 E-value=0.094 Score=49.96 Aligned_cols=35 Identities=23% Similarity=0.372 Sum_probs=27.1
Q ss_pred eEEEEeccCCCchhHHHHHHHHhhccceeeEEEEe
Q 009306 212 YKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFAR 246 (538)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 246 (538)
++|+|.|-||+||||+|..++..+...-..+..++
T Consensus 3 kvIavs~KGGvGKTT~a~nLA~~La~~G~rVlliD 37 (289)
T 2afh_E 3 RQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVG 37 (289)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEEe
Confidence 56888999999999999999998765533444444
No 341
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=92.38 E-value=0.068 Score=48.54 Aligned_cols=23 Identities=26% Similarity=0.437 Sum_probs=21.0
Q ss_pred EEEEeccCCCchhHHHHHHHHhh
Q 009306 213 KLGIWGIGGIGKTTIAGAIFNKI 235 (538)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~~ 235 (538)
+++|+|+.|+||||+++.+...+
T Consensus 5 ~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 5 NIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 58999999999999999998865
No 342
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=92.35 E-value=0.071 Score=48.80 Aligned_cols=23 Identities=39% Similarity=0.434 Sum_probs=20.9
Q ss_pred EEEEeccCCCchhHHHHHHHHhh
Q 009306 213 KLGIWGIGGIGKTTIAGAIFNKI 235 (538)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~~ 235 (538)
.++|.|++|+||||+|+.++..+
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceeeECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999998875
No 343
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=92.33 E-value=0.096 Score=54.79 Aligned_cols=27 Identities=22% Similarity=0.270 Sum_probs=23.7
Q ss_pred ceEEEEeccCCCchhHHHHHHHHhhcc
Q 009306 211 VYKLGIWGIGGIGKTTIAGAIFNKISR 237 (538)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~~ 237 (538)
..+|.|+|++|+||||+|+.+...+..
T Consensus 372 ~~~I~l~G~~GsGKSTia~~La~~L~~ 398 (546)
T 2gks_A 372 GFCVWLTGLPCAGKSTIAEILATMLQA 398 (546)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred ceEEEccCCCCCCHHHHHHHHHHHhhh
Confidence 567999999999999999999987654
No 344
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=92.33 E-value=0.071 Score=46.80 Aligned_cols=23 Identities=35% Similarity=0.452 Sum_probs=20.7
Q ss_pred EEEEeccCCCchhHHHHHHHHhh
Q 009306 213 KLGIWGIGGIGKTTIAGAIFNKI 235 (538)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~~ 235 (538)
+.+|+|+.|+|||||+.+++.-+
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHT
T ss_pred cEEEECCCCCCHHHHHHHHHHHH
Confidence 78999999999999999988654
No 345
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=92.31 E-value=0.043 Score=58.18 Aligned_cols=49 Identities=16% Similarity=0.080 Sum_probs=34.9
Q ss_pred CCCceeccchhHHHHHhhhcCCC---------CceEEEEeccCCCchhHHHHHHHHhh
Q 009306 187 NEDLVGVRLPMKEIESLLRTGST---------NVYKLGIWGIGGIGKTTIAGAIFNKI 235 (538)
Q Consensus 187 ~~~~vGR~~~l~~l~~~L~~~~~---------~~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (538)
.+.++|.+...+.+...|..+.. ...-+.|+|++|+|||+||+.++...
T Consensus 294 ~~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~ 351 (595)
T 3f9v_A 294 APSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVA 351 (595)
T ss_dssp SSTTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTC
T ss_pred cchhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhC
Confidence 36788998876666555543310 00148999999999999999888765
No 346
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=92.31 E-value=0.1 Score=54.96 Aligned_cols=28 Identities=21% Similarity=0.264 Sum_probs=24.3
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhhcc
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKISR 237 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 237 (538)
...+|.|+|++|+||||+|+.+..++..
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L~~ 422 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTLNQ 422 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHhcc
Confidence 3568999999999999999999988653
No 347
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=92.31 E-value=0.068 Score=51.39 Aligned_cols=25 Identities=32% Similarity=0.405 Sum_probs=21.6
Q ss_pred CceEEEEeccCCCchhHHHHHHHHh
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNK 234 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~ 234 (538)
....++|+|+.|+|||||++.++.-
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTTS
T ss_pred CCCEEEEECCCCchHHHHHHHHHcC
Confidence 3457999999999999999988764
No 348
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=92.26 E-value=0.07 Score=47.59 Aligned_cols=23 Identities=22% Similarity=0.491 Sum_probs=20.5
Q ss_pred eEEEEeccCCCchhHHHHHHHHh
Q 009306 212 YKLGIWGIGGIGKTTIAGAIFNK 234 (538)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~ 234 (538)
-.++|.|++|+|||||.+.+...
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 45899999999999999999874
No 349
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=92.23 E-value=0.059 Score=49.56 Aligned_cols=25 Identities=28% Similarity=0.183 Sum_probs=22.0
Q ss_pred CceEEEEeccCCCchhHHHHHHHHh
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNK 234 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~ 234 (538)
...+++|.|+.|+||||+++.++..
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 4578999999999999999988765
No 350
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=92.21 E-value=0.71 Score=46.46 Aligned_cols=25 Identities=24% Similarity=0.198 Sum_probs=21.9
Q ss_pred CCceEEEEeccCCCchhHHHHHHHH
Q 009306 209 TNVYKLGIWGIGGIGKTTIAGAIFN 233 (538)
Q Consensus 209 ~~~~~v~I~G~~GiGKTtLa~~~~~ 233 (538)
...++..|.|++|.||||+..+.+.
T Consensus 159 ~~~~v~~I~G~aGsGKTt~I~~~~~ 183 (446)
T 3vkw_A 159 SSAKVVLVDGVPGCGKTKEILSRVN 183 (446)
T ss_dssp CCSEEEEEEECTTSCHHHHHHHHCC
T ss_pred ccccEEEEEcCCCCCHHHHHHHHhc
Confidence 4578999999999999999988764
No 351
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=92.16 E-value=0.12 Score=50.70 Aligned_cols=38 Identities=18% Similarity=0.266 Sum_probs=30.1
Q ss_pred CCceEEEEeccCCCchhHHHHHHHHhhc--cceeeEEEEe
Q 009306 209 TNVYKLGIWGIGGIGKTTIAGAIFNKIS--RHFSGSYFAR 246 (538)
Q Consensus 209 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~--~~f~~~~~~~ 246 (538)
...+++.+.|-||+||||+|..++..+. .....+..+.
T Consensus 16 ~~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid 55 (348)
T 3io3_A 16 DSLKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLIS 55 (348)
T ss_dssp TTCSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEE
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 3457889999999999999999999887 5544555554
No 352
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=92.10 E-value=0.11 Score=54.05 Aligned_cols=29 Identities=17% Similarity=0.157 Sum_probs=24.3
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhhccc
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKISRH 238 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 238 (538)
...+|.++|++|.||||+|+.++..+.-.
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~~~ 62 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLNWI 62 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence 35679999999999999999999876433
No 353
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=92.09 E-value=0.076 Score=50.16 Aligned_cols=23 Identities=26% Similarity=0.603 Sum_probs=20.5
Q ss_pred EEEEeccCCCchhHHHHHHHHhh
Q 009306 213 KLGIWGIGGIGKTTIAGAIFNKI 235 (538)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~~ 235 (538)
.++|.|+.|+|||||.+.++...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48899999999999999999753
No 354
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=92.07 E-value=0.14 Score=50.01 Aligned_cols=37 Identities=19% Similarity=0.269 Sum_probs=30.1
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEe
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFAR 246 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 246 (538)
..+++.+.|-||+||||+|..++..+......+..++
T Consensus 15 ~~~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid 51 (334)
T 3iqw_A 15 SLRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLS 51 (334)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEE
T ss_pred CeEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEE
Confidence 4567888999999999999999998877655566555
No 355
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=92.01 E-value=0.096 Score=44.45 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=20.3
Q ss_pred eEEEEeccCCCchhHHHHHHHHh
Q 009306 212 YKLGIWGIGGIGKTTIAGAIFNK 234 (538)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~ 234 (538)
+-++|.|.+|+|||||...+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999999874
No 356
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=92.01 E-value=0.12 Score=51.92 Aligned_cols=36 Identities=19% Similarity=0.108 Sum_probs=27.5
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhhccceeeEEEE
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFA 245 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 245 (538)
...+++|+|++|+||||++..++..+...-..+..+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllv 132 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLV 132 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEe
Confidence 356889999999999999999998776553333333
No 357
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=92.00 E-value=0.1 Score=48.25 Aligned_cols=33 Identities=30% Similarity=0.611 Sum_probs=26.3
Q ss_pred EEEeccCCCchhHHHHHHHHhhccceeeEEEEe
Q 009306 214 LGIWGIGGIGKTTIAGAIFNKISRHFSGSYFAR 246 (538)
Q Consensus 214 v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 246 (538)
|+|.|-||+||||+|..++..+......+..++
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~g~~VlliD 35 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASDYDKIYAVD 35 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTTCSCEEEEE
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 566999999999999999998877654455554
No 358
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=91.99 E-value=0.15 Score=47.88 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=19.9
Q ss_pred eEEEEeccCCCchhHHHHHHHHh
Q 009306 212 YKLGIWGIGGIGKTTIAGAIFNK 234 (538)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~ 234 (538)
..++|+|.+|+|||||...+...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~ 122 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGK 122 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTT
T ss_pred hheEEeCCCCCCHHHHHHHHhcc
Confidence 35899999999999999988854
No 359
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=91.98 E-value=0.083 Score=51.23 Aligned_cols=26 Identities=31% Similarity=0.317 Sum_probs=22.9
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhh
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKI 235 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (538)
..++++|+|+.|.|||||.+.+....
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cccEEEEEecCCCCHHHHHHHHHhhc
Confidence 46789999999999999999998653
No 360
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=91.91 E-value=0.12 Score=45.46 Aligned_cols=24 Identities=21% Similarity=0.148 Sum_probs=21.1
Q ss_pred ceEEEEeccCCCchhHHHHHHHHh
Q 009306 211 VYKLGIWGIGGIGKTTIAGAIFNK 234 (538)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~ 234 (538)
...|+|.|.+|+|||||...+...
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 456899999999999999998875
No 361
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=91.90 E-value=0.094 Score=45.09 Aligned_cols=23 Identities=30% Similarity=0.573 Sum_probs=20.3
Q ss_pred eEEEEeccCCCchhHHHHHHHHh
Q 009306 212 YKLGIWGIGGIGKTTIAGAIFNK 234 (538)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~ 234 (538)
..++|.|.+|+|||||...+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 45899999999999999999863
No 362
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=91.86 E-value=0.067 Score=47.02 Aligned_cols=20 Identities=40% Similarity=0.498 Sum_probs=18.7
Q ss_pred EEEeccCCCchhHHHHHHHH
Q 009306 214 LGIWGIGGIGKTTIAGAIFN 233 (538)
Q Consensus 214 v~I~G~~GiGKTtLa~~~~~ 233 (538)
|+|.|.+|+|||||...++.
T Consensus 5 v~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 5 LMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEESCTTSSHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 88999999999999999876
No 363
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=91.84 E-value=0.12 Score=50.73 Aligned_cols=25 Identities=24% Similarity=0.187 Sum_probs=21.8
Q ss_pred CceEEEEeccCCCchhHHHHHHHHh
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNK 234 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~ 234 (538)
...+++|.|+.|+|||||.+.++--
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHCC
Confidence 3457999999999999999999864
No 364
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=91.81 E-value=0.13 Score=50.66 Aligned_cols=25 Identities=24% Similarity=0.304 Sum_probs=21.7
Q ss_pred CceEEEEeccCCCchhHHHHHHHHh
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNK 234 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~ 234 (538)
...+++|.|+.|+|||||.+.+..-
T Consensus 53 ~Gei~~IiGpnGaGKSTLlr~i~GL 77 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLIRCVNLL 77 (366)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEEcCCCchHHHHHHHHhcC
Confidence 3457999999999999999988864
No 365
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=91.79 E-value=0.13 Score=50.73 Aligned_cols=25 Identities=24% Similarity=0.262 Sum_probs=21.8
Q ss_pred CceEEEEeccCCCchhHHHHHHHHh
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNK 234 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~ 234 (538)
...+++|.|+.|+|||||.+.++--
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 28 DGEFMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcC
Confidence 3457999999999999999999864
No 366
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=91.76 E-value=0.12 Score=50.73 Aligned_cols=25 Identities=36% Similarity=0.383 Sum_probs=21.6
Q ss_pred CceEEEEeccCCCchhHHHHHHHHh
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNK 234 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~ 234 (538)
...+++|.|+.|+|||||.+.++--
T Consensus 40 ~Ge~~~llGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 40 EGEMVGLLGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 3457999999999999999999864
No 367
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=91.76 E-value=0.13 Score=50.96 Aligned_cols=26 Identities=23% Similarity=0.123 Sum_probs=22.1
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhh
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKI 235 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (538)
...+++|.|+.|+|||||.+.++--.
T Consensus 28 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 28 EGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 34579999999999999999998643
No 368
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=91.69 E-value=0.15 Score=51.29 Aligned_cols=85 Identities=12% Similarity=-0.006 Sum_probs=47.6
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhhcCChHHHHHHHHHHHhcCCCCCCch-hhcHHHHHHH
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEETCRLGDLRQQLLSTLLNDGNVKNFL-NTDLNFQSRR 288 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~-~~~~~~l~~~ 288 (538)
...+++|+|+.|+|||||.+.+...+...-..+++..+.-+.. .... . ........ -.....++..
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~-~~~~-----------~-q~~v~~~~g~~f~~~lr~~ 232 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFD-IDGI-----------G-QTQVNPRVDMTFARGLRAI 232 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSC-CSSS-----------E-EEECBGGGTBCHHHHHHHH
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhc-cCCc-----------c-eEEEccccCcCHHHHHHHH
Confidence 4557999999999999999999987654422333333110000 0000 0 00000011 1223455666
Q ss_pred hcCCCeEEEEecCCChHHH
Q 009306 289 LTRKKVLIVFDDVDHPRQI 307 (538)
Q Consensus 289 l~~k~~LlVlDdv~~~~~~ 307 (538)
+...+-++++.++.+....
T Consensus 233 Lrq~pd~i~vgEiRd~et~ 251 (418)
T 1p9r_A 233 LRQDPDVVMVGEIRDLETA 251 (418)
T ss_dssp GGGCCSEEEESCCCSHHHH
T ss_pred hccCCCeEEEcCcCCHHHH
Confidence 7777888889998775544
No 369
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=91.68 E-value=0.13 Score=53.78 Aligned_cols=48 Identities=13% Similarity=0.123 Sum_probs=32.4
Q ss_pred HHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEe
Q 009306 199 EIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFAR 246 (538)
Q Consensus 199 ~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 246 (538)
.+..+|..+-....+++|.|++|+|||||++.++......-..++++.
T Consensus 269 ~ld~vL~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~ 316 (525)
T 1tf7_A 269 RLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFA 316 (525)
T ss_dssp HHHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred HHHHHhCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEE
Confidence 344555433334568999999999999999999986554322334443
No 370
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=91.67 E-value=0.21 Score=55.47 Aligned_cols=23 Identities=22% Similarity=-0.119 Sum_probs=20.5
Q ss_pred CceEEEEeccCCCchhHHHHHHH
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIF 232 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~ 232 (538)
...+++|+|+.|.||||+.+.++
T Consensus 661 ~g~i~~ItGpNGsGKSTlLr~ia 683 (934)
T 3thx_A 661 KQMFHIITGPNMGGKSTYIRQTG 683 (934)
T ss_dssp TBCEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 45789999999999999999884
No 371
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=91.66 E-value=0.15 Score=45.79 Aligned_cols=29 Identities=21% Similarity=0.472 Sum_probs=24.8
Q ss_pred eEEEEeccCCCchhHHHHHHHHhhcccee
Q 009306 212 YKLGIWGIGGIGKTTIAGAIFNKISRHFS 240 (538)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~ 240 (538)
+.|+|-|.-|+||||+++.+++.+...++
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~~~~~ 31 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLVKDYD 31 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTTTSC
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHCCCC
Confidence 46889999999999999999998865444
No 372
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=91.60 E-value=0.073 Score=53.46 Aligned_cols=25 Identities=20% Similarity=0.355 Sum_probs=22.0
Q ss_pred CceEEEEeccCCCchhHHHHHHHHh
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNK 234 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~ 234 (538)
....++|.|++|+|||||.+.++..
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCC
Confidence 4558999999999999999999873
No 373
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=91.50 E-value=0.89 Score=41.71 Aligned_cols=40 Identities=28% Similarity=0.151 Sum_probs=28.3
Q ss_pred eeccchhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhh
Q 009306 191 VGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKI 235 (538)
Q Consensus 191 vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (538)
.=|..+.+.+..++.. . -+.|+|+.|.|||.+|..++...
T Consensus 93 ~l~~~Q~~ai~~~~~~----~-~~ll~~~tG~GKT~~a~~~~~~~ 132 (237)
T 2fz4_A 93 SLRDYQEKALERWLVD----K-RGCIVLPTGSGKTHVAMAAINEL 132 (237)
T ss_dssp CCCHHHHHHHHHHTTT----S-EEEEEESSSTTHHHHHHHHHHHS
T ss_pred CcCHHHHHHHHHHHhC----C-CEEEEeCCCCCHHHHHHHHHHHc
Confidence 3445555556655542 1 27889999999999999888765
No 374
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=91.50 E-value=0.14 Score=50.59 Aligned_cols=25 Identities=32% Similarity=0.227 Sum_probs=21.7
Q ss_pred CceEEEEeccCCCchhHHHHHHHHh
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNK 234 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~ 234 (538)
...+++|.|+.|+|||||.+.++--
T Consensus 36 ~Ge~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 36 DGEFLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCChHHHHHHHHHcC
Confidence 3457999999999999999999863
No 375
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=91.50 E-value=0.098 Score=44.45 Aligned_cols=22 Identities=32% Similarity=0.643 Sum_probs=19.6
Q ss_pred EEEEeccCCCchhHHHHHHHHh
Q 009306 213 KLGIWGIGGIGKTTIAGAIFNK 234 (538)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~ 234 (538)
-|++.|.+|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3889999999999999999864
No 376
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=91.37 E-value=0.18 Score=46.45 Aligned_cols=37 Identities=19% Similarity=0.121 Sum_probs=27.8
Q ss_pred CceEEEEec-cCCCchhHHHHHHHHhhccc-eeeEEEEe
Q 009306 210 NVYKLGIWG-IGGIGKTTIAGAIFNKISRH-FSGSYFAR 246 (538)
Q Consensus 210 ~~~~v~I~G-~~GiGKTtLa~~~~~~~~~~-f~~~~~~~ 246 (538)
..++|+|++ -||+||||+|..++..+... -..+..++
T Consensus 3 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD 41 (245)
T 3ea0_A 3 AKRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVD 41 (245)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEE
T ss_pred CCeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEEE
Confidence 346777774 68999999999999988776 44455554
No 377
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=91.37 E-value=0.062 Score=50.49 Aligned_cols=27 Identities=22% Similarity=0.225 Sum_probs=23.2
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhhc
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKIS 236 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (538)
....|+|.|..|+||||+++.++..+.
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 456899999999999999998887763
No 378
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=91.33 E-value=0.11 Score=51.48 Aligned_cols=27 Identities=15% Similarity=0.224 Sum_probs=23.2
Q ss_pred ceEEEEeccCCCchhHHHHHHHHhhcc
Q 009306 211 VYKLGIWGIGGIGKTTIAGAIFNKISR 237 (538)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~~ 237 (538)
...++|+|++|+|||||++.++..+..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~ 196 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNT 196 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 467999999999999999999876543
No 379
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=91.33 E-value=0.12 Score=50.67 Aligned_cols=26 Identities=27% Similarity=0.116 Sum_probs=22.1
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhh
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKI 235 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (538)
...+++|.|+.|+|||||.+.++--.
T Consensus 25 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 25 SGEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp TTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCccHHHHHHHHHcCC
Confidence 34579999999999999999998643
No 380
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=91.31 E-value=0.14 Score=46.83 Aligned_cols=26 Identities=12% Similarity=0.090 Sum_probs=23.4
Q ss_pred ceEEEEeccCCCchhHHHHHHHHhhc
Q 009306 211 VYKLGIWGIGGIGKTTIAGAIFNKIS 236 (538)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (538)
..+|+|.|+.|+||||+|+.++.++.
T Consensus 14 ~~iI~i~g~~gsGk~~i~~~la~~lg 39 (223)
T 3hdt_A 14 NLIITIEREYGSGGRIVGKKLAEELG 39 (223)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999998764
No 381
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=91.26 E-value=0.14 Score=50.60 Aligned_cols=24 Identities=29% Similarity=0.173 Sum_probs=21.3
Q ss_pred ceEEEEeccCCCchhHHHHHHHHh
Q 009306 211 VYKLGIWGIGGIGKTTIAGAIFNK 234 (538)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~ 234 (538)
..+++|.|+.|+|||||.+.++--
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 29 GEFMILLGPSGCGKTTTLRMIAGL 52 (372)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCcHHHHHHHHHHcC
Confidence 457999999999999999999864
No 382
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=91.23 E-value=0.17 Score=49.79 Aligned_cols=28 Identities=21% Similarity=0.381 Sum_probs=23.9
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhhcc
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKISR 237 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 237 (538)
...+++|+|++|+|||||...+......
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~ 100 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTE 100 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhh
Confidence 4678999999999999999999875543
No 383
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=91.18 E-value=0.1 Score=45.79 Aligned_cols=23 Identities=30% Similarity=0.573 Sum_probs=20.6
Q ss_pred eEEEEeccCCCchhHHHHHHHHh
Q 009306 212 YKLGIWGIGGIGKTTIAGAIFNK 234 (538)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~ 234 (538)
..|+|.|.+|+|||||...+...
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999874
No 384
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=91.17 E-value=0.14 Score=43.77 Aligned_cols=23 Identities=22% Similarity=0.401 Sum_probs=20.2
Q ss_pred eEEEEeccCCCchhHHHHHHHHh
Q 009306 212 YKLGIWGIGGIGKTTIAGAIFNK 234 (538)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~ 234 (538)
--|+|.|.+|+|||||...+...
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 34889999999999999999874
No 385
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=91.05 E-value=0.14 Score=54.13 Aligned_cols=27 Identities=26% Similarity=0.331 Sum_probs=24.0
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhhc
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKIS 236 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (538)
...+|.|+|++|+||||+|+.+..++.
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~ 77 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLV 77 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 456899999999999999999998874
No 386
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=91.05 E-value=0.12 Score=51.11 Aligned_cols=34 Identities=24% Similarity=0.227 Sum_probs=26.2
Q ss_pred eEEEEeccCCCchhHHHHHHHHhhccceeeEEEEe
Q 009306 212 YKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFAR 246 (538)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 246 (538)
..++|+|+.|+|||||++.++..+... .+.+.+.
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~~~~~-~g~I~ie 209 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQEIPFD-QRLITIE 209 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTTSCTT-SCEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCCCC-ceEEEEC
Confidence 369999999999999999999865442 3445554
No 387
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=91.03 E-value=0.11 Score=51.10 Aligned_cols=25 Identities=40% Similarity=0.480 Sum_probs=21.7
Q ss_pred CceEEEEeccCCCchhHHHHHHHHh
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNK 234 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~ 234 (538)
...+++|.|+.|+|||||.+.++--
T Consensus 30 ~Ge~~~llGpnGsGKSTLLr~iaGl 54 (353)
T 1oxx_K 30 NGERFGILGPSGAGKTTFMRIIAGL 54 (353)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 3457999999999999999999864
No 388
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=90.97 E-value=0.16 Score=48.86 Aligned_cols=33 Identities=21% Similarity=0.321 Sum_probs=25.2
Q ss_pred hHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhh
Q 009306 197 MKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKI 235 (538)
Q Consensus 197 l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (538)
+++|.+.+. ..+++|.|++|+|||||.+.+. ..
T Consensus 156 i~~L~~~l~-----G~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 156 IDELVDYLE-----GFICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp HHHHHHHTT-----TCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred HHHHHhhcc-----CcEEEEECCCCCCHHHHHHHHH-Hh
Confidence 445555543 2468999999999999999998 54
No 389
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=90.86 E-value=0.12 Score=44.59 Aligned_cols=23 Identities=35% Similarity=0.616 Sum_probs=20.0
Q ss_pred eEEEEeccCCCchhHHHHHHHHh
Q 009306 212 YKLGIWGIGGIGKTTIAGAIFNK 234 (538)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~ 234 (538)
--|+|.|.+|+|||||...+...
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEECCCCccHHHHHHHHhcC
Confidence 34899999999999999998763
No 390
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=90.83 E-value=0.13 Score=43.91 Aligned_cols=22 Identities=27% Similarity=0.514 Sum_probs=19.7
Q ss_pred EEEEeccCCCchhHHHHHHHHh
Q 009306 213 KLGIWGIGGIGKTTIAGAIFNK 234 (538)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~ 234 (538)
-|+|.|.+|+|||||...+...
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4889999999999999999864
No 391
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=90.79 E-value=0.13 Score=43.81 Aligned_cols=22 Identities=27% Similarity=0.569 Sum_probs=19.6
Q ss_pred EEEEeccCCCchhHHHHHHHHh
Q 009306 213 KLGIWGIGGIGKTTIAGAIFNK 234 (538)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~ 234 (538)
-|+|.|.+|+|||||...+...
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999998864
No 392
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=90.77 E-value=0.096 Score=46.27 Aligned_cols=25 Identities=16% Similarity=0.477 Sum_probs=21.5
Q ss_pred CceEEEEeccCCCchhHHHHHHHHh
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNK 234 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~ 234 (538)
....|+|.|.+|+|||||...+...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4556899999999999999999864
No 393
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=90.76 E-value=0.13 Score=45.28 Aligned_cols=22 Identities=32% Similarity=0.643 Sum_probs=19.8
Q ss_pred EEEEeccCCCchhHHHHHHHHh
Q 009306 213 KLGIWGIGGIGKTTIAGAIFNK 234 (538)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~ 234 (538)
-|+|.|.+|+|||||+..+...
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4889999999999999999864
No 394
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=90.73 E-value=0.19 Score=43.95 Aligned_cols=25 Identities=20% Similarity=0.371 Sum_probs=21.3
Q ss_pred CceEEEEeccCCCchhHHHHHHHHh
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNK 234 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~ 234 (538)
....|+|.|.+|+|||||...+...
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 3456899999999999999988764
No 395
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=90.69 E-value=0.12 Score=44.84 Aligned_cols=23 Identities=26% Similarity=0.362 Sum_probs=20.3
Q ss_pred eEEEEeccCCCchhHHHHHHHHh
Q 009306 212 YKLGIWGIGGIGKTTIAGAIFNK 234 (538)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~ 234 (538)
..|+|.|.+|+|||||...+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35889999999999999999864
No 396
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=90.68 E-value=0.13 Score=44.01 Aligned_cols=23 Identities=26% Similarity=0.471 Sum_probs=20.2
Q ss_pred eEEEEeccCCCchhHHHHHHHHh
Q 009306 212 YKLGIWGIGGIGKTTIAGAIFNK 234 (538)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~ 234 (538)
--|+|.|.+|+|||||...+...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 34889999999999999999864
No 397
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=90.61 E-value=0.21 Score=49.59 Aligned_cols=38 Identities=16% Similarity=0.170 Sum_probs=29.3
Q ss_pred CCceEEEEec-cCCCchhHHHHHHHHhhccceeeEEEEe
Q 009306 209 TNVYKLGIWG-IGGIGKTTIAGAIFNKISRHFSGSYFAR 246 (538)
Q Consensus 209 ~~~~~v~I~G-~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 246 (538)
...++|+|+| -||+||||+|..++..+......+..++
T Consensus 141 ~~~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVlliD 179 (373)
T 3fkq_A 141 DKSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLN 179 (373)
T ss_dssp TSCEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEE
Confidence 3567888875 8999999999999998776644555555
No 398
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.59 E-value=0.14 Score=43.84 Aligned_cols=22 Identities=27% Similarity=0.436 Sum_probs=19.6
Q ss_pred EEEEeccCCCchhHHHHHHHHh
Q 009306 213 KLGIWGIGGIGKTTIAGAIFNK 234 (538)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~ 234 (538)
-|+|.|.+|+|||||...+...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3789999999999999999864
No 399
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=90.58 E-value=0.19 Score=51.67 Aligned_cols=28 Identities=18% Similarity=0.128 Sum_probs=23.7
Q ss_pred ceEEEEeccCCCchhHHHHHHHHhhccc
Q 009306 211 VYKLGIWGIGGIGKTTIAGAIFNKISRH 238 (538)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 238 (538)
..+|.++|++|+||||+++.++..+...
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~~~ 66 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLNFI 66 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 4578999999999999999999876533
No 400
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=90.58 E-value=0.14 Score=43.72 Aligned_cols=22 Identities=32% Similarity=0.605 Sum_probs=19.6
Q ss_pred EEEEeccCCCchhHHHHHHHHh
Q 009306 213 KLGIWGIGGIGKTTIAGAIFNK 234 (538)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~ 234 (538)
-|+|.|.+|+|||||...+...
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3889999999999999999863
No 401
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=90.56 E-value=0.14 Score=43.53 Aligned_cols=21 Identities=29% Similarity=0.257 Sum_probs=19.1
Q ss_pred EEEeccCCCchhHHHHHHHHh
Q 009306 214 LGIWGIGGIGKTTIAGAIFNK 234 (538)
Q Consensus 214 v~I~G~~GiGKTtLa~~~~~~ 234 (538)
|+|.|.+|+|||||...+...
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999999764
No 402
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=90.54 E-value=0.41 Score=55.70 Aligned_cols=23 Identities=26% Similarity=0.367 Sum_probs=20.5
Q ss_pred ceEEEEeccCCCchhHHHHHHHH
Q 009306 211 VYKLGIWGIGGIGKTTIAGAIFN 233 (538)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~ 233 (538)
...++|+|+.|+|||||++.+..
T Consensus 1105 Ge~vaIVG~SGsGKSTL~~lL~r 1127 (1321)
T 4f4c_A 1105 GQTLALVGPSGCGKSTVVALLER 1127 (1321)
T ss_dssp TCEEEEECSTTSSTTSHHHHHTT
T ss_pred CCEEEEECCCCChHHHHHHHHhc
Confidence 44699999999999999998876
No 403
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=90.53 E-value=0.13 Score=44.02 Aligned_cols=21 Identities=38% Similarity=0.605 Sum_probs=18.8
Q ss_pred EEEEeccCCCchhHHHHHHHH
Q 009306 213 KLGIWGIGGIGKTTIAGAIFN 233 (538)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~ 233 (538)
-|+|.|.+|+|||||...+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 488999999999999999864
No 404
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=90.53 E-value=0.14 Score=43.83 Aligned_cols=22 Identities=27% Similarity=0.463 Sum_probs=19.9
Q ss_pred EEEEeccCCCchhHHHHHHHHh
Q 009306 213 KLGIWGIGGIGKTTIAGAIFNK 234 (538)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~ 234 (538)
-|+|.|.+|+|||||...+...
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4889999999999999999874
No 405
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=90.52 E-value=0.14 Score=44.91 Aligned_cols=23 Identities=22% Similarity=0.248 Sum_probs=20.2
Q ss_pred eEEEEeccCCCchhHHHHHHHHh
Q 009306 212 YKLGIWGIGGIGKTTIAGAIFNK 234 (538)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~ 234 (538)
--|+|.|.+|+|||||...+...
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 34889999999999999999874
No 406
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=90.52 E-value=0.13 Score=44.10 Aligned_cols=22 Identities=23% Similarity=0.687 Sum_probs=19.6
Q ss_pred EEEEeccCCCchhHHHHHHHHh
Q 009306 213 KLGIWGIGGIGKTTIAGAIFNK 234 (538)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~ 234 (538)
-|+|.|.+|+|||||...+...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4889999999999999999863
No 407
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=90.43 E-value=0.14 Score=44.36 Aligned_cols=24 Identities=33% Similarity=0.520 Sum_probs=20.8
Q ss_pred ceEEEEeccCCCchhHHHHHHHHh
Q 009306 211 VYKLGIWGIGGIGKTTIAGAIFNK 234 (538)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~ 234 (538)
..-|+|.|.+|+|||||...+...
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 445899999999999999998864
No 408
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=90.42 E-value=0.14 Score=43.77 Aligned_cols=22 Identities=23% Similarity=0.403 Sum_probs=19.6
Q ss_pred EEEEeccCCCchhHHHHHHHHh
Q 009306 213 KLGIWGIGGIGKTTIAGAIFNK 234 (538)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~ 234 (538)
-|+|.|.+|+|||||...+...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4889999999999999999863
No 409
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=90.41 E-value=0.24 Score=48.47 Aligned_cols=29 Identities=34% Similarity=0.534 Sum_probs=24.4
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhhccc
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKISRH 238 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 238 (538)
....++|.|+.|+|||||.+.++......
T Consensus 70 ~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~ 98 (347)
T 2obl_A 70 IGQRIGIFAGSGVGKSTLLGMICNGASAD 98 (347)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 34579999999999999999999876543
No 410
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=90.41 E-value=0.15 Score=44.02 Aligned_cols=25 Identities=32% Similarity=0.234 Sum_probs=21.3
Q ss_pred CceEEEEeccCCCchhHHHHHHHHh
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNK 234 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~ 234 (538)
....|+|.|.+|+|||||...+...
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3456899999999999999999863
No 411
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=90.40 E-value=0.18 Score=45.70 Aligned_cols=27 Identities=26% Similarity=0.316 Sum_probs=24.2
Q ss_pred ceEEEEeccCCCchhHHHHHHHHhhcc
Q 009306 211 VYKLGIWGIGGIGKTTIAGAIFNKISR 237 (538)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~~ 237 (538)
...|.|.|+.|+||||+++.+.+.+..
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 457999999999999999999998765
No 412
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.39 E-value=0.16 Score=45.76 Aligned_cols=26 Identities=19% Similarity=0.096 Sum_probs=22.0
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhh
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKI 235 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (538)
....|+|.|++|+|||||...+....
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34568999999999999999998753
No 413
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=90.35 E-value=0.15 Score=44.13 Aligned_cols=23 Identities=26% Similarity=0.612 Sum_probs=20.2
Q ss_pred eEEEEeccCCCchhHHHHHHHHh
Q 009306 212 YKLGIWGIGGIGKTTIAGAIFNK 234 (538)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~ 234 (538)
--|+|.|.+|+|||||...+...
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999864
No 414
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=90.35 E-value=0.14 Score=44.87 Aligned_cols=22 Identities=27% Similarity=0.372 Sum_probs=19.5
Q ss_pred EEEEeccCCCchhHHHHHHHHh
Q 009306 213 KLGIWGIGGIGKTTIAGAIFNK 234 (538)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~ 234 (538)
-|+|.|.+|+|||||...+...
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999988764
No 415
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=90.33 E-value=0.17 Score=42.90 Aligned_cols=24 Identities=29% Similarity=0.293 Sum_probs=20.7
Q ss_pred eEEEEeccCCCchhHHHHHHHHhh
Q 009306 212 YKLGIWGIGGIGKTTIAGAIFNKI 235 (538)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~~ 235 (538)
.+.+|+|+.|.|||||..+++.-+
T Consensus 24 g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999999999887643
No 416
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=90.31 E-value=0.26 Score=47.98 Aligned_cols=37 Identities=24% Similarity=0.299 Sum_probs=28.7
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEe
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFAR 246 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 246 (538)
..+++.+.|-||+||||+|..++..+......+..++
T Consensus 18 ~~~i~v~sgkGGvGKTTva~~LA~~lA~~G~rVllvD 54 (329)
T 2woo_A 18 SLKWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLIS 54 (329)
T ss_dssp TCCEEEEECSSSSSHHHHHHHHHHHHHTSSSCEEEEE
T ss_pred CCEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEE
Confidence 3456777899999999999999998877644555554
No 417
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=90.30 E-value=0.13 Score=43.85 Aligned_cols=20 Identities=25% Similarity=0.416 Sum_probs=18.3
Q ss_pred EEEeccCCCchhHHHHHHHH
Q 009306 214 LGIWGIGGIGKTTIAGAIFN 233 (538)
Q Consensus 214 v~I~G~~GiGKTtLa~~~~~ 233 (538)
|+|.|.+|+|||||...+..
T Consensus 5 i~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 5 VLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEESTTSSHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHcC
Confidence 78999999999999998864
No 418
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=90.26 E-value=0.31 Score=46.67 Aligned_cols=38 Identities=24% Similarity=0.185 Sum_probs=29.6
Q ss_pred CCceEEEEecc-CCCchhHHHHHHHHhhccceeeEEEEe
Q 009306 209 TNVYKLGIWGI-GGIGKTTIAGAIFNKISRHFSGSYFAR 246 (538)
Q Consensus 209 ~~~~~v~I~G~-~GiGKTtLa~~~~~~~~~~f~~~~~~~ 246 (538)
...++|.|+|. ||+||||+|..++..+......+..++
T Consensus 102 ~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID 140 (299)
T 3cio_A 102 TENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFID 140 (299)
T ss_dssp CSCCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEEE
Confidence 34678999985 899999999999998776544555554
No 419
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=90.26 E-value=0.5 Score=58.28 Aligned_cols=158 Identities=9% Similarity=0.053 Sum_probs=0.0
Q ss_pred eEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhhcCChHHHHHHHHHHHhcCCCCCCchhhcHHHHHHHhcC
Q 009306 212 YKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEETCRLGDLRQQLLSTLLNDGNVKNFLNTDLNFQSRRLTR 291 (538)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~ 291 (538)
+.+.++|++|+|||++|+.+...... .....+. .+.......+++.+-..+..........-.... .+
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~~~~--~~~~~in----fsa~ts~~~~~~~i~~~~~~~~~~~g~~~~P~~------~g 1335 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRNSSL--YDVVGIN----FSKDTTTEHILSALHRHTNYVTTSKGLTLLPKS------DI 1335 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSCSS--CEEEEEE----CCTTCCHHHHHHHHHHHBCCEEETTTEEEEEBS------SS
T ss_pred CeEEEECCCCCCHHHHHHHHHhcCCC--CceEEEE----eecCCCHHHHHHHHHHHhhhccccCCccccCCC------CC
Q ss_pred CCeEEEEecCCCh-----------HHHHHHhcCcCCCCCCCEEEEeccchhhhhhcCCC----------------eeEEc
Q 009306 292 KKVLIVFDDVDHP-----------RQIKILVGRLDLFASGSRIIITTRDRQVLANCGVD----------------EVYQM 344 (538)
Q Consensus 292 k~~LlVlDdv~~~-----------~~~~~l~~~l~~~~~~~~iiiTtR~~~~~~~~~~~----------------~~~~l 344 (538)
+++++.+||++-+ +.+..++..-.+......-.++-.+-.+...++.. .++.+
T Consensus 1336 k~~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf~vi~i 1415 (2695)
T 4akg_A 1336 KNLVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHAAILYL 1415 (2695)
T ss_dssp SCEEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTEEEEEC
T ss_pred ceEEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhheeeEEEe
Q ss_pred CCCCHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHh
Q 009306 345 EELVHDDALRLFSRHAFGGDHPHESHTELACKTIKYA 381 (538)
Q Consensus 345 ~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~ 381 (538)
+..+.++-..+|.......-...+.....+..++..+
T Consensus 1416 ~~P~~~~l~~I~~~il~~~l~~~~~v~~~~~~lv~at 1452 (2695)
T 4akg_A 1416 GYPSGKSLSQIYEIYYKAIFKLVPEFRSYTEPFARAS 1452 (2695)
T ss_dssp CCCTTTHHHHHHHHHHHHHTTSSGGGGGGHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
No 420
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=90.24 E-value=0.15 Score=44.03 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=20.0
Q ss_pred eEEEEeccCCCchhHHHHHHHHh
Q 009306 212 YKLGIWGIGGIGKTTIAGAIFNK 234 (538)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~ 234 (538)
--|+|.|.+|+|||||...+...
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 34889999999999999998863
No 421
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=90.21 E-value=0.15 Score=48.69 Aligned_cols=48 Identities=15% Similarity=0.214 Sum_probs=31.4
Q ss_pred hhHHHHHhhhcCCCCceEEEEec---cCCCchhHHHHHHHHhhccceeeEEEEe
Q 009306 196 PMKEIESLLRTGSTNVYKLGIWG---IGGIGKTTIAGAIFNKISRHFSGSYFAR 246 (538)
Q Consensus 196 ~l~~l~~~L~~~~~~~~~v~I~G---~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 246 (538)
.+.++.+.+.. ..++++|++ -||+||||+|..++..+......+..++
T Consensus 22 ~~~~~~r~~~~---~~~~i~v~~~s~KGGvGKTT~a~nLA~~la~~G~rVlliD 72 (298)
T 2oze_A 22 ILEELRRILSN---KNEAIVILNNYFKGGVGKSKLSTMFAYLTDKLNLKVLMID 72 (298)
T ss_dssp HHHHHHHHHHH---HCSCEEEEECCSSSSSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHhcC---CCcEEEEEeccCCCCchHHHHHHHHHHHHHhCCCeEEEEe
Confidence 34455555543 234566665 8999999999999987765543444444
No 422
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=90.17 E-value=0.16 Score=44.73 Aligned_cols=27 Identities=33% Similarity=0.463 Sum_probs=21.2
Q ss_pred eEEEEeccCCCchhHHHHHHHHhhccc
Q 009306 212 YKLGIWGIGGIGKTTIAGAIFNKISRH 238 (538)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~~~~~ 238 (538)
--|+|.|.+|+|||||.+.+.......
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~~~~ 41 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKVPEG 41 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTSCGG
T ss_pred cEEEEECCCCCCHHHHHHHHHhhcccc
Confidence 348899999999999997776654433
No 423
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=90.14 E-value=0.16 Score=43.44 Aligned_cols=22 Identities=23% Similarity=0.386 Sum_probs=19.7
Q ss_pred EEEEeccCCCchhHHHHHHHHh
Q 009306 213 KLGIWGIGGIGKTTIAGAIFNK 234 (538)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~ 234 (538)
-|+|.|.+|+|||||...+...
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4889999999999999999863
No 424
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=90.10 E-value=0.27 Score=49.57 Aligned_cols=25 Identities=20% Similarity=0.331 Sum_probs=21.6
Q ss_pred EEEEeccCCCchhHHHHHHHHhhcc
Q 009306 213 KLGIWGIGGIGKTTIAGAIFNKISR 237 (538)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~~~~ 237 (538)
.++|.|.+|+|||+|+..+++....
T Consensus 153 r~~Ifgg~G~GKt~L~~~Ia~~~~~ 177 (465)
T 3vr4_D 153 KLPVFSGSGLPHKELAAQIARQATV 177 (465)
T ss_dssp BCCEEECTTSCHHHHHHHHHHHCBC
T ss_pred EEEEeCCCCcChHHHHHHHHHHHHh
Confidence 4789999999999999999887554
No 425
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=90.09 E-value=0.35 Score=49.36 Aligned_cols=24 Identities=38% Similarity=0.277 Sum_probs=19.2
Q ss_pred eEEEEeccCCCchhHHHH-HHHHhh
Q 009306 212 YKLGIWGIGGIGKTTIAG-AIFNKI 235 (538)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~-~~~~~~ 235 (538)
+.++|.|.+|+|||+||. .+++..
T Consensus 176 QR~~I~g~~g~GKT~Lal~~I~~~~ 200 (515)
T 2r9v_A 176 QRELIIGDRQTGKTAIAIDTIINQK 200 (515)
T ss_dssp CBEEEEEETTSSHHHHHHHHHHTTT
T ss_pred CEEEEEcCCCCCccHHHHHHHHHhh
Confidence 348999999999999965 666654
No 426
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=90.09 E-value=0.22 Score=53.34 Aligned_cols=37 Identities=24% Similarity=0.099 Sum_probs=24.7
Q ss_pred chhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhh
Q 009306 195 LPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKI 235 (538)
Q Consensus 195 ~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (538)
.+.+.+...|.. ..+..|+||||.|||+.+.++...+
T Consensus 193 ~Q~~AV~~al~~----~~~~lI~GPPGTGKT~ti~~~I~~l 229 (646)
T 4b3f_X 193 SQKEAVLFALSQ----KELAIIHGPPGTGKTTTVVEIILQA 229 (646)
T ss_dssp HHHHHHHHHHHC----SSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC----CCceEEECCCCCCHHHHHHHHHHHH
Confidence 345556666642 2368899999999997655555443
No 427
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=90.07 E-value=0.22 Score=43.02 Aligned_cols=25 Identities=28% Similarity=0.466 Sum_probs=21.4
Q ss_pred CceEEEEeccCCCchhHHHHHHHHh
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNK 234 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~ 234 (538)
...-|+|.|.+|+|||||...+...
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3446899999999999999999874
No 428
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=90.06 E-value=0.32 Score=45.80 Aligned_cols=38 Identities=21% Similarity=0.163 Sum_probs=29.5
Q ss_pred CCceEEEEecc-CCCchhHHHHHHHHhhccceeeEEEEe
Q 009306 209 TNVYKLGIWGI-GGIGKTTIAGAIFNKISRHFSGSYFAR 246 (538)
Q Consensus 209 ~~~~~v~I~G~-~GiGKTtLa~~~~~~~~~~f~~~~~~~ 246 (538)
...++|.|+|. ||.||||+|..++..+......+..++
T Consensus 80 ~~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLID 118 (271)
T 3bfv_A 80 SAVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVD 118 (271)
T ss_dssp CCCCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEEe
Confidence 34678999875 899999999999998876555566655
No 429
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=90.01 E-value=0.49 Score=43.05 Aligned_cols=105 Identities=12% Similarity=0.019 Sum_probs=51.7
Q ss_pred ceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEeehhhhhhcCChHHHHHHHHHHHhcCCCC--CCchhhcHHHHHHH
Q 009306 211 VYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFARNVREAEETCRLGDLRQQLLSTLLNDGNV--KNFLNTDLNFQSRR 288 (538)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~--~~~~~~~~~~l~~~ 288 (538)
..+..++|.-|.||||-+...+.+...+...++.+.-.. +...+ ..+...+ +..... .....+....
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~--D~Ryg-~~i~sr~----G~~~~a~~i~~~~di~~~---- 87 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAK--DTRYS-SSFCTHD----RNTMEALPACLLRDVAQE---- 87 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETT--CCCC----------------CEEEEESSGGGGHHH----
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecC--Cccch-HHHHhhc----CCeeEEEecCCHHHHHHH----
Confidence 467899999999999888888777655443344433111 11222 3333222 211110 0112222222
Q ss_pred hcCCCeEEEEecCCChHHHHHHhcCcCCCCCCCEEEEeccc
Q 009306 289 LTRKKVLIVFDDVDHPRQIKILVGRLDLFASGSRIIITTRD 329 (538)
Q Consensus 289 l~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~~~~iiiTtR~ 329 (538)
. +.--+|+||++.-...+..+...+. ..|..||+|.++
T Consensus 88 ~-~~~dvViIDEaQF~~~v~el~~~l~--~~gi~VI~~GL~ 125 (234)
T 2orv_A 88 A-LGVAVIGIDEGQFFPDIVEFCEAMA--NAGKTVIVAALD 125 (234)
T ss_dssp H-TTCSEEEESSGGGCTTHHHHHHHHH--HTTCEEEEECCS
T ss_pred h-ccCCEEEEEchhhhhhHHHHHHHHH--hCCCEEEEEecc
Confidence 2 3334999999821111333333322 257789999887
No 430
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=90.01 E-value=0.16 Score=44.86 Aligned_cols=22 Identities=36% Similarity=0.460 Sum_probs=19.9
Q ss_pred EEEEeccCCCchhHHHHHHHHh
Q 009306 213 KLGIWGIGGIGKTTIAGAIFNK 234 (538)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~ 234 (538)
.|+|.|.+|+|||||...+...
T Consensus 25 ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 25 KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999873
No 431
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=89.98 E-value=0.16 Score=43.45 Aligned_cols=23 Identities=35% Similarity=0.427 Sum_probs=20.2
Q ss_pred eEEEEeccCCCchhHHHHHHHHh
Q 009306 212 YKLGIWGIGGIGKTTIAGAIFNK 234 (538)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~ 234 (538)
.-|+|.|.+|+|||||...+...
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 45899999999999999999763
No 432
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=89.98 E-value=0.16 Score=44.64 Aligned_cols=22 Identities=32% Similarity=0.545 Sum_probs=19.7
Q ss_pred EEEEeccCCCchhHHHHHHHHh
Q 009306 213 KLGIWGIGGIGKTTIAGAIFNK 234 (538)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~ 234 (538)
-|+|.|.+|+|||||...+...
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 4889999999999999998864
No 433
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=89.97 E-value=0.42 Score=48.66 Aligned_cols=25 Identities=40% Similarity=0.247 Sum_probs=19.5
Q ss_pred ceEEEEeccCCCchhHHHH-HHHHhh
Q 009306 211 VYKLGIWGIGGIGKTTIAG-AIFNKI 235 (538)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~-~~~~~~ 235 (538)
.+.++|.|.+|+|||+||. .+++..
T Consensus 162 GQR~~Ifg~~g~GKT~Lal~~I~~~~ 187 (502)
T 2qe7_A 162 GQRELIIGDRQTGKTTIAIDTIINQK 187 (502)
T ss_dssp TCBCEEEECSSSCHHHHHHHHHHGGG
T ss_pred CCEEEEECCCCCCchHHHHHHHHHhh
Confidence 3448999999999999965 666554
No 434
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=89.92 E-value=0.17 Score=43.77 Aligned_cols=24 Identities=29% Similarity=0.443 Sum_probs=20.9
Q ss_pred ceEEEEeccCCCchhHHHHHHHHh
Q 009306 211 VYKLGIWGIGGIGKTTIAGAIFNK 234 (538)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~ 234 (538)
..-|+|.|.+|+|||||...+...
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 345899999999999999999874
No 435
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=89.91 E-value=0.2 Score=44.02 Aligned_cols=24 Identities=25% Similarity=0.526 Sum_probs=21.0
Q ss_pred ceEEEEeccCCCchhHHHHHHHHh
Q 009306 211 VYKLGIWGIGGIGKTTIAGAIFNK 234 (538)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~ 234 (538)
...|+|.|.+|+|||||...+...
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CeEEEEECCCCCCHHHHHHHHHcC
Confidence 446899999999999999999875
No 436
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=89.91 E-value=0.14 Score=44.38 Aligned_cols=22 Identities=23% Similarity=0.477 Sum_probs=19.8
Q ss_pred EEEEeccCCCchhHHHHHHHHh
Q 009306 213 KLGIWGIGGIGKTTIAGAIFNK 234 (538)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~ 234 (538)
-|+|.|.+|+|||||...+...
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4889999999999999999874
No 437
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=89.83 E-value=0.19 Score=44.85 Aligned_cols=23 Identities=26% Similarity=0.286 Sum_probs=20.0
Q ss_pred eEEEEeccCCCchhHHHHHHHHh
Q 009306 212 YKLGIWGIGGIGKTTIAGAIFNK 234 (538)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~ 234 (538)
--|+|.|.+|+|||||...+...
T Consensus 31 ~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 31 IKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 35889999999999999988863
No 438
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=89.79 E-value=0.16 Score=44.16 Aligned_cols=24 Identities=42% Similarity=0.747 Sum_probs=20.7
Q ss_pred ceEEEEeccCCCchhHHHHHHHHh
Q 009306 211 VYKLGIWGIGGIGKTTIAGAIFNK 234 (538)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~ 234 (538)
.--|+|.|.+|+|||||...+...
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 345899999999999999999864
No 439
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=89.77 E-value=0.16 Score=44.41 Aligned_cols=22 Identities=23% Similarity=0.294 Sum_probs=19.5
Q ss_pred EEEEeccCCCchhHHHHHHHHh
Q 009306 213 KLGIWGIGGIGKTTIAGAIFNK 234 (538)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~ 234 (538)
-|+|.|.+|+|||||...+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 3789999999999999998864
No 440
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=89.77 E-value=0.17 Score=44.35 Aligned_cols=24 Identities=25% Similarity=0.321 Sum_probs=20.8
Q ss_pred ceEEEEeccCCCchhHHHHHHHHh
Q 009306 211 VYKLGIWGIGGIGKTTIAGAIFNK 234 (538)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~ 234 (538)
.--|+|.|.+|+|||||...+...
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 345899999999999999999863
No 441
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=89.73 E-value=0.15 Score=44.68 Aligned_cols=21 Identities=24% Similarity=0.246 Sum_probs=19.3
Q ss_pred EEEeccCCCchhHHHHHHHHh
Q 009306 214 LGIWGIGGIGKTTIAGAIFNK 234 (538)
Q Consensus 214 v~I~G~~GiGKTtLa~~~~~~ 234 (538)
+.|+|.+|+|||++|.+++..
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 689999999999999999865
No 442
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=89.72 E-value=0.36 Score=47.42 Aligned_cols=36 Identities=22% Similarity=0.203 Sum_probs=28.2
Q ss_pred ceEEEEeccCCCchhHHHHHHHHhhc--cceeeEEEEe
Q 009306 211 VYKLGIWGIGGIGKTTIAGAIFNKIS--RHFSGSYFAR 246 (538)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~--~~f~~~~~~~ 246 (538)
..++...|-||+||||+|..++..+. .....+..++
T Consensus 18 ~~i~v~sgKGGvGKTTvaanLA~~lA~~~~G~rVLLvD 55 (354)
T 2woj_A 18 HKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLIS 55 (354)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHHCTTSCEEEEE
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 45667779999999999999999887 6555555555
No 443
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=89.68 E-value=0.18 Score=43.59 Aligned_cols=22 Identities=27% Similarity=0.401 Sum_probs=19.5
Q ss_pred EEEEeccCCCchhHHHHHHHHh
Q 009306 213 KLGIWGIGGIGKTTIAGAIFNK 234 (538)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~ 234 (538)
-|+|.|.+|+|||||...+...
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4889999999999999999863
No 444
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=89.65 E-value=0.18 Score=44.05 Aligned_cols=24 Identities=25% Similarity=0.504 Sum_probs=20.7
Q ss_pred ceEEEEeccCCCchhHHHHHHHHh
Q 009306 211 VYKLGIWGIGGIGKTTIAGAIFNK 234 (538)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~ 234 (538)
.--|+|.|.+|+|||||...+...
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 345889999999999999999864
No 445
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=89.61 E-value=0.18 Score=44.45 Aligned_cols=24 Identities=29% Similarity=0.547 Sum_probs=20.8
Q ss_pred ceEEEEeccCCCchhHHHHHHHHh
Q 009306 211 VYKLGIWGIGGIGKTTIAGAIFNK 234 (538)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~ 234 (538)
.--|+|.|.+|+|||||...+...
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 345899999999999999999874
No 446
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=89.60 E-value=0.12 Score=46.36 Aligned_cols=25 Identities=16% Similarity=0.259 Sum_probs=20.9
Q ss_pred CceEEEEeccCCCchhHHHHHHHHh
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNK 234 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~ 234 (538)
....++|.|.+|+|||||.+.+...
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3456999999999999999987653
No 447
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=89.55 E-value=0.18 Score=43.98 Aligned_cols=22 Identities=27% Similarity=0.545 Sum_probs=19.8
Q ss_pred EEEEeccCCCchhHHHHHHHHh
Q 009306 213 KLGIWGIGGIGKTTIAGAIFNK 234 (538)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~ 234 (538)
-|+|.|.+|+|||||...+...
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4889999999999999999864
No 448
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=89.50 E-value=0.18 Score=44.69 Aligned_cols=22 Identities=32% Similarity=0.611 Sum_probs=19.5
Q ss_pred eEEEEeccCCCchhHHHHHHHH
Q 009306 212 YKLGIWGIGGIGKTTIAGAIFN 233 (538)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~ 233 (538)
--|+|.|.+|+|||||...+..
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 3489999999999999999885
No 449
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=89.48 E-value=0.25 Score=44.75 Aligned_cols=33 Identities=15% Similarity=0.013 Sum_probs=24.6
Q ss_pred eEEEEec-cCCCchhHHHHHHHHhhccceeeEEE
Q 009306 212 YKLGIWG-IGGIGKTTIAGAIFNKISRHFSGSYF 244 (538)
Q Consensus 212 ~~v~I~G-~~GiGKTtLa~~~~~~~~~~f~~~~~ 244 (538)
+++.|+| -||+||||++..++..++.....+..
T Consensus 2 k~I~v~s~kgGvGKTt~a~nLa~~la~~G~rVll 35 (224)
T 1byi_A 2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAG 35 (224)
T ss_dssp EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEE
Confidence 4677877 48999999999999887655333333
No 450
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=89.46 E-value=0.19 Score=43.78 Aligned_cols=22 Identities=27% Similarity=0.309 Sum_probs=19.5
Q ss_pred EEEEeccCCCchhHHHHHHHHh
Q 009306 213 KLGIWGIGGIGKTTIAGAIFNK 234 (538)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~ 234 (538)
-|+|.|.+|+|||||...+...
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4889999999999999998863
No 451
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=89.46 E-value=0.27 Score=43.81 Aligned_cols=26 Identities=19% Similarity=0.166 Sum_probs=22.5
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhh
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKI 235 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (538)
...+|+|+|++|+||+|.|..+.+.+
T Consensus 10 ~~~II~itGk~~SGKd~va~~l~~~~ 35 (202)
T 3ch4_B 10 PRLVLLFSGKRKSGKDFVTEALQSRL 35 (202)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCChHHHHHHHHHHc
Confidence 45689999999999999999887755
No 452
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=89.44 E-value=0.26 Score=52.17 Aligned_cols=37 Identities=24% Similarity=0.217 Sum_probs=29.2
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEe
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFAR 246 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 246 (538)
..+++.+.|.||+||||+|..++..+......+..++
T Consensus 7 ~~~i~~~sgkGGvGKTT~a~~lA~~lA~~G~rVLlvd 43 (589)
T 1ihu_A 7 IPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVS 43 (589)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCEEEEEeCCCcCHHHHHHHHHHHHHHHCCCcEEEEE
Confidence 4567889999999999999999988776644455554
No 453
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=89.42 E-value=0.19 Score=43.74 Aligned_cols=23 Identities=26% Similarity=0.460 Sum_probs=20.2
Q ss_pred eEEEEeccCCCchhHHHHHHHHh
Q 009306 212 YKLGIWGIGGIGKTTIAGAIFNK 234 (538)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~ 234 (538)
.-|+|.|.+|+|||||...+...
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 35889999999999999999863
No 454
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=89.41 E-value=0.3 Score=49.45 Aligned_cols=36 Identities=14% Similarity=0.184 Sum_probs=27.0
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEe
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFAR 246 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 246 (538)
....++|.|++|+|||||++.++...... .+.+.+.
T Consensus 156 ~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~-~G~i~~~ 191 (438)
T 2dpy_A 156 RGQRMGLFAGSGVGKSVLLGMMARYTRAD-VIVVGLI 191 (438)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHSCCS-EEEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccCCC-eEEEEEe
Confidence 45579999999999999999999876443 3344443
No 455
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=89.40 E-value=0.31 Score=45.84 Aligned_cols=26 Identities=27% Similarity=0.572 Sum_probs=21.9
Q ss_pred CCceEEEEeccCCCchhHHHHHHHHh
Q 009306 209 TNVYKLGIWGIGGIGKTTIAGAIFNK 234 (538)
Q Consensus 209 ~~~~~v~I~G~~GiGKTtLa~~~~~~ 234 (538)
.....|++.|.+|+|||||...++..
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~ 62 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGE 62 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 34556899999999999999999864
No 456
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=89.40 E-value=0.19 Score=43.52 Aligned_cols=23 Identities=26% Similarity=0.323 Sum_probs=20.2
Q ss_pred eEEEEeccCCCchhHHHHHHHHh
Q 009306 212 YKLGIWGIGGIGKTTIAGAIFNK 234 (538)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~ 234 (538)
--|+|.|.+|+|||||...+...
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 35889999999999999999864
No 457
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=89.39 E-value=0.29 Score=45.78 Aligned_cols=25 Identities=24% Similarity=0.567 Sum_probs=21.7
Q ss_pred CceEEEEeccCCCchhHHHHHHHHh
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNK 234 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~ 234 (538)
....|+|.|.+|+|||||...+...
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~ 59 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGE 59 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4456899999999999999999874
No 458
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=89.37 E-value=0.19 Score=43.56 Aligned_cols=22 Identities=27% Similarity=0.259 Sum_probs=19.5
Q ss_pred EEEEeccCCCchhHHHHHHHHh
Q 009306 213 KLGIWGIGGIGKTTIAGAIFNK 234 (538)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~ 234 (538)
-|+|.|.+|+|||||...+...
T Consensus 10 ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4889999999999999988864
No 459
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=89.34 E-value=0.23 Score=51.73 Aligned_cols=37 Identities=22% Similarity=0.143 Sum_probs=26.1
Q ss_pred CceEEEEeccCCCchhHHHHHHH-HhhccceeeEEEEe
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIF-NKISRHFSGSYFAR 246 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~-~~~~~~f~~~~~~~ 246 (538)
...+++|.|++|+|||||++.++ .-+...-.+.+++.
T Consensus 38 ~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~ 75 (525)
T 1tf7_A 38 IGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVT 75 (525)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 45679999999999999999963 33322224566665
No 460
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=89.32 E-value=0.19 Score=44.42 Aligned_cols=23 Identities=35% Similarity=0.670 Sum_probs=20.2
Q ss_pred eEEEEeccCCCchhHHHHHHHHh
Q 009306 212 YKLGIWGIGGIGKTTIAGAIFNK 234 (538)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~ 234 (538)
--|+|.|.+|+|||||...+...
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 34889999999999999999874
No 461
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=89.30 E-value=0.19 Score=43.57 Aligned_cols=23 Identities=22% Similarity=0.420 Sum_probs=20.3
Q ss_pred ceEEEEeccCCCchhHHHHHHHH
Q 009306 211 VYKLGIWGIGGIGKTTIAGAIFN 233 (538)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~ 233 (538)
..-|+|.|.+|+|||||...+..
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHHc
Confidence 34589999999999999999985
No 462
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=89.29 E-value=0.17 Score=48.62 Aligned_cols=20 Identities=35% Similarity=0.647 Sum_probs=18.2
Q ss_pred EEEeccCCCchhHHHHHHHH
Q 009306 214 LGIWGIGGIGKTTIAGAIFN 233 (538)
Q Consensus 214 v~I~G~~GiGKTtLa~~~~~ 233 (538)
|+|.|++|+|||||.+.++.
T Consensus 21 I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 21 LMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp EEEEEETTSSHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 69999999999999999764
No 463
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=89.27 E-value=0.53 Score=54.76 Aligned_cols=26 Identities=23% Similarity=0.341 Sum_probs=22.1
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhh
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKI 235 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (538)
....++|+|+.|+|||||++.+...+
T Consensus 443 ~G~~vaivG~sGsGKSTll~ll~~~~ 468 (1321)
T 4f4c_A 443 AGQTVALVGSSGCGKSTIISLLLRYY 468 (1321)
T ss_dssp TTCEEEEEECSSSCHHHHHHHHTTSS
T ss_pred CCcEEEEEecCCCcHHHHHHHhcccc
Confidence 34579999999999999999888643
No 464
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=89.25 E-value=0.71 Score=53.53 Aligned_cols=26 Identities=19% Similarity=0.216 Sum_probs=21.9
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhh
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKI 235 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (538)
....++|+|+.|+|||||++.+...+
T Consensus 415 ~G~~~~ivG~sGsGKSTl~~ll~g~~ 440 (1284)
T 3g5u_A 415 SGQTVALVGNSGCGKSTTVQLMQRLY 440 (1284)
T ss_dssp TTCEEEEECCSSSSHHHHHHHTTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34579999999999999999887643
No 465
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=89.24 E-value=1.3 Score=48.37 Aligned_cols=34 Identities=24% Similarity=0.143 Sum_probs=24.1
Q ss_pred hhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHH
Q 009306 196 PMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFN 233 (538)
Q Consensus 196 ~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~ 233 (538)
+.+.+...+.. ...+.|+|+.|.||||++..+..
T Consensus 98 q~~~i~~~l~~----~~~vii~gpTGSGKTtllp~ll~ 131 (773)
T 2xau_A 98 QRDEFLKLYQN----NQIMVFVGETGSGKTTQIPQFVL 131 (773)
T ss_dssp GHHHHHHHHHH----CSEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHhC----CCeEEEECCCCCCHHHHHHHHHH
Confidence 44555555653 23689999999999997766654
No 466
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=89.23 E-value=0.2 Score=43.36 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=20.2
Q ss_pred eEEEEeccCCCchhHHHHHHHHh
Q 009306 212 YKLGIWGIGGIGKTTIAGAIFNK 234 (538)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~ 234 (538)
--|+|.|.+|+|||||...+...
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 35899999999999999998864
No 467
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=89.23 E-value=0.2 Score=44.04 Aligned_cols=22 Identities=32% Similarity=0.308 Sum_probs=20.0
Q ss_pred EEEEeccCCCchhHHHHHHHHh
Q 009306 213 KLGIWGIGGIGKTTIAGAIFNK 234 (538)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~ 234 (538)
-|+|.|.+|+|||||...+...
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHhcC
Confidence 4899999999999999999874
No 468
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=89.23 E-value=0.22 Score=43.10 Aligned_cols=24 Identities=29% Similarity=0.505 Sum_probs=20.5
Q ss_pred CceEEEEeccCCCchhHHHHHHHH
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFN 233 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~ 233 (538)
..--|+|.|.+|+|||||...+..
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCS
T ss_pred cceEEEEECCCCCCHHHHHHHHhc
Confidence 344589999999999999998875
No 469
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=89.21 E-value=0.17 Score=45.04 Aligned_cols=22 Identities=32% Similarity=0.385 Sum_probs=19.4
Q ss_pred eEEEEeccCCCchhHHHHHHHH
Q 009306 212 YKLGIWGIGGIGKTTIAGAIFN 233 (538)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~ 233 (538)
.-|+|.|.+|+|||||...+..
T Consensus 26 ~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 26 GKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp EEEEEEEETTSSHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3488999999999999998875
No 470
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=89.20 E-value=0.2 Score=44.29 Aligned_cols=23 Identities=26% Similarity=0.437 Sum_probs=20.4
Q ss_pred eEEEEeccCCCchhHHHHHHHHh
Q 009306 212 YKLGIWGIGGIGKTTIAGAIFNK 234 (538)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~ 234 (538)
--|+|.|.+|+|||||...+...
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 34889999999999999999875
No 471
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=89.17 E-value=0.15 Score=45.26 Aligned_cols=22 Identities=36% Similarity=0.696 Sum_probs=19.3
Q ss_pred ceEEEEeccCCCchhHHHHHHH
Q 009306 211 VYKLGIWGIGGIGKTTIAGAIF 232 (538)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~ 232 (538)
.--|+|.|.+|+|||||...+.
T Consensus 23 ~~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 23 IFKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHTC
T ss_pred EEEEEEECCCCCCHHHHHHHHH
Confidence 3458999999999999999885
No 472
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=89.14 E-value=0.2 Score=44.15 Aligned_cols=23 Identities=26% Similarity=0.481 Sum_probs=20.3
Q ss_pred eEEEEeccCCCchhHHHHHHHHh
Q 009306 212 YKLGIWGIGGIGKTTIAGAIFNK 234 (538)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~ 234 (538)
--|+|.|.+|+|||||...+...
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 34899999999999999999864
No 473
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=89.14 E-value=0.2 Score=44.76 Aligned_cols=24 Identities=25% Similarity=0.502 Sum_probs=20.7
Q ss_pred ceEEEEeccCCCchhHHHHHHHHh
Q 009306 211 VYKLGIWGIGGIGKTTIAGAIFNK 234 (538)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~ 234 (538)
.--|+|.|.+|+|||||...+...
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 345899999999999999998864
No 474
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=89.10 E-value=0.2 Score=44.88 Aligned_cols=24 Identities=21% Similarity=0.214 Sum_probs=20.8
Q ss_pred ceEEEEeccCCCchhHHHHHHHHh
Q 009306 211 VYKLGIWGIGGIGKTTIAGAIFNK 234 (538)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~ 234 (538)
.--|+|.|.+|+|||||+..+...
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 345899999999999999999874
No 475
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=89.06 E-value=0.23 Score=44.74 Aligned_cols=23 Identities=39% Similarity=0.547 Sum_probs=20.1
Q ss_pred ceEEEEeccCCCchhHHHHHHHH
Q 009306 211 VYKLGIWGIGGIGKTTIAGAIFN 233 (538)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~ 233 (538)
.-.|+|+|.-|+||||+++.+..
T Consensus 9 ~~~iglTGgigsGKStv~~~l~~ 31 (210)
T 4i1u_A 9 MYAIGLTGGIGSGKTTVADLFAA 31 (210)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHH
Confidence 34699999999999999998765
No 476
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=89.02 E-value=0.18 Score=51.46 Aligned_cols=26 Identities=19% Similarity=0.198 Sum_probs=22.2
Q ss_pred CceEEEEeccCCCchhHHHHHHHHhh
Q 009306 210 NVYKLGIWGIGGIGKTTIAGAIFNKI 235 (538)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (538)
...+++|.|+.|+|||||++.++.-.
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 34569999999999999999998754
No 477
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=89.00 E-value=0.21 Score=44.49 Aligned_cols=24 Identities=38% Similarity=0.570 Sum_probs=20.9
Q ss_pred ceEEEEeccCCCchhHHHHHHHHh
Q 009306 211 VYKLGIWGIGGIGKTTIAGAIFNK 234 (538)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~ 234 (538)
..-|+|.|.+|+|||||...+...
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 8 LLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 445899999999999999999874
No 478
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=88.95 E-value=0.21 Score=44.37 Aligned_cols=24 Identities=25% Similarity=0.466 Sum_probs=20.6
Q ss_pred ceEEEEeccCCCchhHHHHHHHHh
Q 009306 211 VYKLGIWGIGGIGKTTIAGAIFNK 234 (538)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~ 234 (538)
..-|+|.|.+|+|||||...+...
T Consensus 14 ~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 14 LHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 345899999999999999998863
No 479
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=88.93 E-value=0.21 Score=43.79 Aligned_cols=22 Identities=32% Similarity=0.377 Sum_probs=19.8
Q ss_pred EEEEeccCCCchhHHHHHHHHh
Q 009306 213 KLGIWGIGGIGKTTIAGAIFNK 234 (538)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~ 234 (538)
-|+|.|.+|+|||||...+...
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999863
No 480
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=88.89 E-value=0.27 Score=47.10 Aligned_cols=34 Identities=24% Similarity=0.440 Sum_probs=25.1
Q ss_pred hHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhh
Q 009306 197 MKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKI 235 (538)
Q Consensus 197 l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (538)
++++...+. ..+++|.|++|+|||||.+.+....
T Consensus 160 v~~lf~~l~-----geiv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 160 IEELKEYLK-----GKISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp HHHHHHHHS-----SSEEEEECSTTSSHHHHHHHHSTTC
T ss_pred HHHHHHHhc-----CCeEEEECCCCCcHHHHHHHhcccc
Confidence 444555443 2368999999999999999887643
No 481
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=88.89 E-value=0.22 Score=43.74 Aligned_cols=23 Identities=26% Similarity=0.351 Sum_probs=20.4
Q ss_pred eEEEEeccCCCchhHHHHHHHHh
Q 009306 212 YKLGIWGIGGIGKTTIAGAIFNK 234 (538)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~ 234 (538)
--|+|.|.+|+|||||...+...
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999864
No 482
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=88.87 E-value=0.35 Score=45.26 Aligned_cols=36 Identities=22% Similarity=0.158 Sum_probs=27.2
Q ss_pred CceEEEEe-ccCCCchhHHHHHHHHhhccceeeEEEEe
Q 009306 210 NVYKLGIW-GIGGIGKTTIAGAIFNKISRHFSGSYFAR 246 (538)
Q Consensus 210 ~~~~v~I~-G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 246 (538)
..++|+|+ |-||+||||+|..++..+. ....+..++
T Consensus 26 ~~~vI~v~s~kGGvGKTT~a~~LA~~la-~g~~VlliD 62 (267)
T 3k9g_A 26 KPKIITIASIKGGVGKSTSAIILATLLS-KNNKVLLID 62 (267)
T ss_dssp CCEEEEECCSSSSSCHHHHHHHHHHHHT-TTSCEEEEE
T ss_pred CCeEEEEEeCCCCchHHHHHHHHHHHHH-CCCCEEEEE
Confidence 45677775 6799999999999999888 544444444
No 483
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=88.85 E-value=0.21 Score=44.34 Aligned_cols=24 Identities=29% Similarity=0.368 Sum_probs=20.9
Q ss_pred ceEEEEeccCCCchhHHHHHHHHh
Q 009306 211 VYKLGIWGIGGIGKTTIAGAIFNK 234 (538)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~ 234 (538)
..-|+|.|.+|+|||||...+...
T Consensus 24 ~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 24 YRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEEECCCCcCHHHHHHHHHhC
Confidence 345899999999999999999874
No 484
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=88.84 E-value=0.22 Score=43.83 Aligned_cols=22 Identities=32% Similarity=0.370 Sum_probs=19.7
Q ss_pred EEEEeccCCCchhHHHHHHHHh
Q 009306 213 KLGIWGIGGIGKTTIAGAIFNK 234 (538)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~ 234 (538)
-|+|.|.+|+|||||...+...
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4889999999999999999863
No 485
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=88.83 E-value=0.21 Score=48.95 Aligned_cols=25 Identities=20% Similarity=0.282 Sum_probs=21.3
Q ss_pred eEEEEeccCCCchhHHHHHHHHhhc
Q 009306 212 YKLGIWGIGGIGKTTIAGAIFNKIS 236 (538)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (538)
.+++|.|++|+|||||.+.+.....
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CEEEEECCCCccHHHHHHHHhcccc
Confidence 3689999999999999998886543
No 486
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=88.82 E-value=0.22 Score=44.76 Aligned_cols=24 Identities=17% Similarity=0.135 Sum_probs=20.4
Q ss_pred ceEEEEeccCCCchhHHHHHHHHh
Q 009306 211 VYKLGIWGIGGIGKTTIAGAIFNK 234 (538)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~ 234 (538)
...|+|.|.+|+|||||...+...
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 345899999999999999999864
No 487
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=88.75 E-value=0.22 Score=43.86 Aligned_cols=23 Identities=30% Similarity=0.371 Sum_probs=20.3
Q ss_pred eEEEEeccCCCchhHHHHHHHHh
Q 009306 212 YKLGIWGIGGIGKTTIAGAIFNK 234 (538)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~ 234 (538)
--|+|.|.+|+|||||...+...
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 34889999999999999999874
No 488
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=88.73 E-value=0.2 Score=50.33 Aligned_cols=21 Identities=33% Similarity=0.591 Sum_probs=19.4
Q ss_pred EEEeccCCCchhHHHHHHHHh
Q 009306 214 LGIWGIGGIGKTTIAGAIFNK 234 (538)
Q Consensus 214 v~I~G~~GiGKTtLa~~~~~~ 234 (538)
++|+|++|+|||||.+.++..
T Consensus 45 vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 45 ILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp EEEECSTTSSSHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhCc
Confidence 899999999999999998863
No 489
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=88.71 E-value=0.53 Score=44.68 Aligned_cols=38 Identities=18% Similarity=0.127 Sum_probs=29.4
Q ss_pred CCceEEEEec-cCCCchhHHHHHHHHhhccceeeEEEEe
Q 009306 209 TNVYKLGIWG-IGGIGKTTIAGAIFNKISRHFSGSYFAR 246 (538)
Q Consensus 209 ~~~~~v~I~G-~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 246 (538)
...++|.|+| -||+||||+|..++..+......+..++
T Consensus 90 ~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID 128 (286)
T 3la6_A 90 AQNNVLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLID 128 (286)
T ss_dssp TTCCEEEEEESSSSSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEe
Confidence 3467788886 5899999999999998877655566655
No 490
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=88.70 E-value=0.23 Score=43.60 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=20.2
Q ss_pred eEEEEeccCCCchhHHHHHHHHh
Q 009306 212 YKLGIWGIGGIGKTTIAGAIFNK 234 (538)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~ 234 (538)
.-|+|.|.+|+|||||...+...
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 45899999999999999999863
No 491
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=88.67 E-value=0.21 Score=44.37 Aligned_cols=23 Identities=26% Similarity=0.351 Sum_probs=20.3
Q ss_pred eEEEEeccCCCchhHHHHHHHHh
Q 009306 212 YKLGIWGIGGIGKTTIAGAIFNK 234 (538)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~ 234 (538)
--|+|.|.+|+|||||...+...
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 45899999999999999999864
No 492
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=88.65 E-value=0.33 Score=51.77 Aligned_cols=47 Identities=21% Similarity=0.248 Sum_probs=30.2
Q ss_pred chhHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEe
Q 009306 195 LPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFAR 246 (538)
Q Consensus 195 ~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 246 (538)
.+.+.+...+. .++..|+|++|.|||+++..+...+...-...+.+.
T Consensus 184 ~Q~~av~~~l~-----~~~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~ 230 (624)
T 2gk6_A 184 SQVYAVKTVLQ-----RPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVC 230 (624)
T ss_dssp HHHHHHHHHHT-----CSEEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEE
T ss_pred HHHHHHHHHhc-----CCCeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEE
Confidence 34444555553 236889999999999988888776543223344444
No 493
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=88.61 E-value=0.23 Score=43.84 Aligned_cols=22 Identities=27% Similarity=0.764 Sum_probs=19.8
Q ss_pred eEEEEeccCCCchhHHHHHHHH
Q 009306 212 YKLGIWGIGGIGKTTIAGAIFN 233 (538)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~ 233 (538)
--|+|.|.+|+|||||...+..
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHc
Confidence 3589999999999999999986
No 494
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=88.59 E-value=0.57 Score=46.79 Aligned_cols=28 Identities=21% Similarity=0.275 Sum_probs=23.4
Q ss_pred CCceEEEEe-ccCCCchhHHHHHHHHhhc
Q 009306 209 TNVYKLGIW-GIGGIGKTTIAGAIFNKIS 236 (538)
Q Consensus 209 ~~~~~v~I~-G~~GiGKTtLa~~~~~~~~ 236 (538)
...++|+|+ |-||+||||+|..++..+.
T Consensus 106 ~~~~vIav~s~KGGvGKTT~a~nLA~~La 134 (398)
T 3ez2_A 106 SEAYVIFISNLKGGVSKTVSTVSLAHAMR 134 (398)
T ss_dssp CSCEEEEECCSSSSSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEEeCCCCccHHHHHHHHHHHHH
Confidence 346777777 7899999999999998876
No 495
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=88.54 E-value=0.23 Score=44.01 Aligned_cols=24 Identities=21% Similarity=0.401 Sum_probs=20.7
Q ss_pred ceEEEEeccCCCchhHHHHHHHHh
Q 009306 211 VYKLGIWGIGGIGKTTIAGAIFNK 234 (538)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~ 234 (538)
..-|+|.|.+|+|||||...+...
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CeEEEEECcCCCCHHHHHHHHHhC
Confidence 345899999999999999999864
No 496
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=88.54 E-value=0.21 Score=44.28 Aligned_cols=23 Identities=26% Similarity=0.515 Sum_probs=19.4
Q ss_pred eEEEEeccCCCchhHHHHHHHHh
Q 009306 212 YKLGIWGIGGIGKTTIAGAIFNK 234 (538)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~ 234 (538)
--|+|.|.+|+|||||...+..+
T Consensus 21 ~ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 21 PRILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp CEEEEEESTTSSHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 34899999999999999877664
No 497
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=88.53 E-value=0.22 Score=44.93 Aligned_cols=22 Identities=32% Similarity=0.611 Sum_probs=19.4
Q ss_pred eEEEEeccCCCchhHHHHHHHH
Q 009306 212 YKLGIWGIGGIGKTTIAGAIFN 233 (538)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~ 233 (538)
--|+|.|.+|+|||||...+..
T Consensus 38 ~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 38 YRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp EEEEEECCTTSSHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 3489999999999999999874
No 498
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=88.49 E-value=0.21 Score=43.48 Aligned_cols=23 Identities=35% Similarity=0.277 Sum_probs=20.2
Q ss_pred eEEEEeccCCCchhHHHHHHHHh
Q 009306 212 YKLGIWGIGGIGKTTIAGAIFNK 234 (538)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~ 234 (538)
--|+|.|.+|+|||||...+...
T Consensus 22 ~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 22 HKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEEETTSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 34899999999999999999864
No 499
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=88.47 E-value=1.7 Score=40.41 Aligned_cols=50 Identities=8% Similarity=-0.128 Sum_probs=37.8
Q ss_pred hHHHHHhhhcCCCCceEEEEeccCCCchhHHHHHHHHhhccceeeEEEEe
Q 009306 197 MKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFNKISRHFSGSYFAR 246 (538)
Q Consensus 197 l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 246 (538)
+..|.++|..+-....++.|.|.+|.|||+|+.++...-..+-+.++++.
T Consensus 7 i~~LD~~l~GGl~~gs~~li~g~p~~~~~~l~~qfl~~g~~~Ge~~~~~~ 56 (260)
T 3bs4_A 7 IEELDREIGKIKKHSLILIHEEDASSRGKDILFYILSRKLKSDNLVGMFS 56 (260)
T ss_dssp SHHHHHHHCCBCTTCEEEEEECSGGGCHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred cHHHHHHhCCCCCCCcEEEEEeCCCccHHHHHHHHHHHHHHCCCcEEEEE
Confidence 44567777766667888999988888999999999886555555566654
No 500
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=88.45 E-value=0.23 Score=50.82 Aligned_cols=25 Identities=20% Similarity=0.260 Sum_probs=22.1
Q ss_pred eEEEEeccCCCchhHHHHHHHHhhc
Q 009306 212 YKLGIWGIGGIGKTTIAGAIFNKIS 236 (538)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (538)
.+++|.|+.|+|||||.+.++.-..
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~~ 54 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTALI 54 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred ceEEEECCCCCcHHHHHHHHhcCCC
Confidence 6899999999999999999887543
Done!